BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|255764471|ref|YP_003064835.2| GTP-binding protein EngA [Candidatus Liberibacter asiaticus str. psy62] (470 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|255764471|ref|YP_003064835.2| GTP-binding protein EngA [Candidatus Liberibacter asiaticus str. psy62] gi|254547822|gb|ACT56895.2| GTP-binding protein EngA [Candidatus Liberibacter asiaticus str. psy62] Length = 470 Score = 963 bits (2490), Expect = 0.0, Method: Compositional matrix adjust. Identities = 470/470 (100%), Positives = 470/470 (100%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI Sbjct: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK Sbjct: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR Sbjct: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD Sbjct: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE Sbjct: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT Sbjct: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP Sbjct: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK Sbjct: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 >gi|315122134|ref|YP_004062623.1| GTP-binding protein EngA [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495536|gb|ADR52135.1| GTP-binding protein EngA [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 448 Score = 667 bits (1721), Expect = 0.0, Method: Compositional matrix adjust. Identities = 329/448 (73%), Positives = 379/448 (84%), Gaps = 4/448 (0%) Query: 27 MAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNCSIAKQMNDQTELAINEAHLI 86 MA+VG+ PG+TRDRLYG+AIING FN++DTAGI + + IAKQ NDQTE+AI+EAHL Sbjct: 1 MAIVGDCPGMTRDRLYGKAIINGFEFNVIDTAGIENENSHFIAKQTNDQTEIAIDEAHLA 60 Query: 87 LFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQRNFYEIYSLDFKEIVEISA 146 LFLIDSK+GITPYDH I FLRKKNIPIIIVSNKM+T IAQRNF++IYS FKEIVEISA Sbjct: 61 LFLIDSKSGITPYDHLIAKFLRKKNIPIIIVSNKMETHIAQRNFHDIYSFGFKEIVEISA 120 Query: 147 EHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEESPKENITSEGK--SSVKNI-SKP 203 EH +G S+L+SVI K+FKQ+YP++ LE+ EN + + S +NI EGK + NI SKP Sbjct: 121 EHGIGISDLYSVIIKLFKQQYPDYQLEIKENPTKTKTSQDKNILIEGKEPTDSSNISSKP 180 Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 LRIAVVGRPNVGKSTLINRLLGYNR+L G ++G TRDS+ ISW WKNHPI+IFDTAGMRK Sbjct: 181 LRIAVVGRPNVGKSTLINRLLGYNRVLIGPKAGTTRDSIPISWEWKNHPIKIFDTAGMRK 240 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 PSRI E +E+K+V KSMQS+R CETTIVLLDAT+PFEKQDLRIVDSV NTG A VLA NK Sbjct: 241 PSRIIEQVEKKSVTKSMQSIRVCETTIVLLDATVPFEKQDLRIVDSVINTGRAAVLAFNK 300 Query: 324 WDMV-SDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRI 382 WD+V +DK LLQ+LR KA NLPQ G+I I ISG TGEGLD+LM SVLEINKLWKTRI Sbjct: 301 WDLVTTDKSILLQNLRIKATNNLPQAGNIRIEAISGHTGEGLDNLMASVLEINKLWKTRI 360 Query: 383 TTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLI 442 +TS LNSWL++TQL+NPPPTI RY+RLKYITQ QSSPPSF+IFC P +IPESYKRYLI Sbjct: 361 STSRLNSWLEQTQLKNPPPTIAGRYHRLKYITQTQSSPPSFVIFCNSPKEIPESYKRYLI 420 Query: 443 NRLRINFSLSGIPIRMCFQSSKNPYIKK 470 NRLR +FSLSGIPIR+ FQSSKNPYIKK Sbjct: 421 NRLRFDFSLSGIPIRIRFQSSKNPYIKK 448 Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 31/56 (55%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 IA+VG PNVGKSTL NRL+ ++G G TRD + I DTAG+ Sbjct: 183 IAVVGRPNVGKSTLINRLLGYNRVLIGPKAGTTRDSIPISWEWKNHPIKIFDTAGM 238 >gi|190892852|ref|YP_001979394.1| GTP-binding protein [Rhizobium etli CIAT 652] gi|238692517|sp|B3PVJ6|DER_RHIE6 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|190698131|gb|ACE92216.1| GTP-binding protein [Rhizobium etli CIAT 652] Length = 473 Score = 479 bits (1232), Expect = e-133, Method: Compositional matrix adjust. Identities = 226/472 (47%), Positives = 326/472 (69%), Gaps = 5/472 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +T+AIVG PNVGKSTLFNRLV KK+A+V + PG+TRDR G A + G+ F I+DTAG+ Sbjct: 1 MSFTVAIVGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRRPGDARLMGLTFTIIDTAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + S+ +M QTE AI+EA L LF++D+K G+TP D A+ LR++ P+++V+NK Sbjct: 61 EEADEESLQGRMRAQTEAAIDEADLSLFVVDAKNGLTPVDTALAEMLRRRGKPVVLVANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELH-SVIFKIFKQK-YPNHPLEMIENN 178 + R + FY+ Y+L E ISAEH G +L +++ I K + Y + + + + Sbjct: 121 SEARGSDSGFYDAYTLGLGEPTPISAEHGQGMIDLRDAIVAAIGKDRAYAKEDVAVTDVD 180 Query: 179 KRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 ES + E + V + +KPLR+A+VGRPN GKSTLINR LG +RLLTG ++GIT Sbjct: 181 IPPSESEADG---EDEEPVYDDTKPLRVAIVGRPNAGKSTLINRFLGEDRLLTGPEAGIT 237 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RDS+S+ W+W+ I++FDTAGMR+ +R+TE LE+ +V +++++R ET +++ DATIP Sbjct: 238 RDSISVEWDWRGRTIKMFDTAGMRRKARVTEKLEKLSVADALRAIRFAETVVIVFDATIP 297 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 FEKQDL+IVD V G A VLA NKWDM+ D+ +L DLR K + LPQ I ISG Sbjct: 298 FEKQDLQIVDLVLREGRAAVLAFNKWDMIEDRQAVLADLREKTDRLLPQARGIRAVPISG 357 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 +TG GLD LM S+++ +++W RI+T+ LN WL+ Q+Q+PPP + R +LKY+TQ+++ Sbjct: 358 QTGWGLDKLMQSIIDTDRVWNKRISTARLNRWLETQQIQHPPPAVSGRRIKLKYMTQVKA 417 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 PP+F+I CT + +PESY RYLIN LR +F + +PIR+ F+S++NPY K Sbjct: 418 RPPAFMISCTRSDALPESYTRYLINGLRADFDMPSVPIRIHFRSAENPYESK 469 >gi|327189207|gb|EGE56387.1| GTP-binding protein [Rhizobium etli CNPAF512] Length = 473 Score = 478 bits (1229), Expect = e-132, Method: Compositional matrix adjust. Identities = 226/473 (47%), Positives = 326/473 (68%), Gaps = 7/473 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +T+AIVG PNVGKSTLFNRLV KK+A+V + PG+TRDR G A + G+ F I+DTAG+ Sbjct: 1 MSFTVAIVGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRRPGDARLMGLTFTIIDTAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + S+ +M QTE AI+EA L LF++D+K G+TP D A+ LR++ P+++V+NK Sbjct: 61 EEADEESLQGRMRAQTEAAIDEADLSLFVVDAKNGLTPVDTALAEMLRRRGKPVVLVANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELH-SVIFKIFKQK-YPNHPLEMIENN 178 + R + FY+ Y+L E ISAEH G +L +++ I K + Y + + + + Sbjct: 121 SEARGSDSGFYDAYTLGLGEPTPISAEHGQGMIDLRDAIVAAIGKDRAYAKEDIAVTDVD 180 Query: 179 KRNEESPKEN-ITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGI 237 P EN E + + + +KPLR+A+VGRPN GKSTLINR LG +RLLTG ++GI Sbjct: 181 I----PPSENEADGEDEEPIYDDTKPLRVAIVGRPNAGKSTLINRFLGEDRLLTGPEAGI 236 Query: 238 TRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATI 297 TRDS+S+ W+W+ I++FDTAGMR+ +R+TE LE+ +V +++++R ET +++ DATI Sbjct: 237 TRDSISVEWDWRGRTIKMFDTAGMRRKARVTEKLEKLSVADALRAIRFAETVVIVFDATI 296 Query: 298 PFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTIS 357 PFEKQDL+IVD V G A VLA NKWDM+ D+ +L DLR K + LPQ I IS Sbjct: 297 PFEKQDLQIVDLVLREGRAAVLAFNKWDMIEDRQAVLADLREKTDRLLPQARGIRAVPIS 356 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 G+TG GLD LM S+++ +++W RI+T+ LN WL+ Q+Q+PPP + R +LKY+TQ++ Sbjct: 357 GQTGWGLDKLMQSIIDTDRVWNKRISTARLNRWLETQQIQHPPPAVSGRRIKLKYMTQVK 416 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 + PP+F+I CT + +PESY RYLIN LR +F + +PIR+ F+S++NPY K Sbjct: 417 ARPPAFMISCTRSDALPESYTRYLINGLRADFDMPSVPIRIHFRSAENPYESK 469 >gi|86358709|ref|YP_470601.1| GTP-binding protein EngA [Rhizobium etli CFN 42] gi|123511179|sp|Q2K5L2|DER_RHIEC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|86282811|gb|ABC91874.1| GTP-binding protein [Rhizobium etli CFN 42] Length = 473 Score = 474 bits (1221), Expect = e-132, Method: Compositional matrix adjust. Identities = 224/473 (47%), Positives = 320/473 (67%), Gaps = 7/473 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +T+AIVG PNVGKSTLFNRLV KK+A+V + PG+TRDR G A + G+ F I+DTAG+ Sbjct: 1 MSFTVAIVGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRRPGDARLMGLTFTIIDTAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + S+ +M QTE AI+EA L LF++D+K G+TP D A+ LR++ P+++V+NK Sbjct: 61 EEADEESLQGRMRAQTEAAIDEADLSLFVVDAKNGLTPVDTALAEMLRRRGKPVVLVANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF--KQKYPNHPLEMIENN 178 + R + FY+ Y+L E ISAEH G +L I + + Y + + + + Sbjct: 121 SEARGSDSGFYDAYTLGLGEPTPISAEHGQGMLDLRDAIVEAIGKDRAYAKEDVAVTDVD 180 Query: 179 KRNEESPKEN-ITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGI 237 P EN E + + +KPLR+A+VGRPN GKSTLINR LG +RLLTG ++GI Sbjct: 181 I----PPSENEADGEDEEPAYDETKPLRVAIVGRPNAGKSTLINRFLGEDRLLTGPEAGI 236 Query: 238 TRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATI 297 TRDS+S+ W+W+ I++FDTAGMR+ +R+TE LE+ +V +++++R ET +++ DATI Sbjct: 237 TRDSISVEWDWRGRTIKMFDTAGMRRKARVTEKLEKLSVADALRAIRFAETVVIVFDATI 296 Query: 298 PFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTIS 357 PFEKQDL+IVD V G A VLA NKWDM+ D+ +L DLR K + LPQ I IS Sbjct: 297 PFEKQDLQIVDLVLREGRAAVLAFNKWDMIEDRQAVLADLREKTDRLLPQARGIRAVPIS 356 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 G+TG GLD LM S+++ +++W RI+T+ LN WL+ Q+Q+PPP + R +LKY+TQ++ Sbjct: 357 GQTGWGLDKLMQSIIDTDRVWNKRISTARLNRWLETQQIQHPPPAVSGRRIKLKYMTQVK 416 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 + PP+F+I CT + +PESY RYLIN LR +F + +PIR+ F+S NP+ K Sbjct: 417 ARPPAFMISCTRSDALPESYTRYLINGLRADFDMPSVPIRIHFRSPDNPFESK 469 >gi|307307991|ref|ZP_07587709.1| ribosome-associated GTPase EngA [Sinorhizobium meliloti BL225C] gi|307319941|ref|ZP_07599364.1| ribosome-associated GTPase EngA [Sinorhizobium meliloti AK83] gi|306894481|gb|EFN25244.1| ribosome-associated GTPase EngA [Sinorhizobium meliloti AK83] gi|306901395|gb|EFN31999.1| ribosome-associated GTPase EngA [Sinorhizobium meliloti BL225C] Length = 476 Score = 472 bits (1215), Expect = e-131, Method: Compositional matrix adjust. Identities = 223/471 (47%), Positives = 317/471 (67%), Gaps = 1/471 (0%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +T+AI+G PNVGKSTLFNRLV KK+A+V + PG+TRDR G A + + F I+DTAG+ Sbjct: 1 MSFTVAIIGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRRPGDAKLVDLKFRIIDTAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + S+ +M QTE AI+EA L LF++D+KAG+TP D + LR++ P+++V+NK Sbjct: 61 EESSPDSLQGRMWAQTEAAIDEADLSLFVVDAKAGLTPADQTLAEMLRRRGKPVVVVANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI-ENNK 179 + R ++ FY+ ++L E ISAEH G +L I ++ P E + E N Sbjct: 121 SEARGSEGGFYDAFTLGLGEPCPISAEHGQGMLDLRDAIVAALGEERAFPPAEDVAETNV 180 Query: 180 RNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITR 239 + E E + +KPLR+A+VGRPN GKSTLINR LG +RLLTG ++GITR Sbjct: 181 DIRPAAGEGTEDEEVEPAYDETKPLRVAIVGRPNAGKSTLINRFLGEDRLLTGPEAGITR 240 Query: 240 DSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPF 299 DS+S+ W+W+ I++FDTAGMR+ +++ E LE+ +V +++++R ET +++ DAT+PF Sbjct: 241 DSISVEWDWRGRTIKMFDTAGMRRKAKVQEKLEKLSVADALRAIRFAETVVIVFDATVPF 300 Query: 300 EKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGR 359 EKQDL+IVD V G A VLA NKWD+V + LL DLR K + LPQ I ISG Sbjct: 301 EKQDLQIVDLVLREGRAAVLAFNKWDLVENWQALLVDLREKTERLLPQARGIRAVPISGH 360 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 TG GLD LM +++E +K+W RI+T+ LN WL+ Q+Q+PPP + R +LKY+TQ+++ Sbjct: 361 TGYGLDRLMQAIIETDKVWNRRISTARLNRWLESQQVQHPPPAVSGRRLKLKYMTQVKAR 420 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 PP F+I CT P +PESY RYLIN LR +F L G+PIR+ F++S+NP+ K Sbjct: 421 PPGFMISCTRPEAVPESYTRYLINGLRNDFDLPGVPIRVHFRASENPFESK 471 >gi|16264869|ref|NP_437661.1| GTP-binding protein EngA [Sinorhizobium meliloti 1021] gi|26006728|sp|Q92UK6|DER_RHIME RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|15141008|emb|CAC49521.1| putative GTP-binding protein [Sinorhizobium meliloti 1021] Length = 476 Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust. Identities = 224/471 (47%), Positives = 316/471 (67%), Gaps = 1/471 (0%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +T+AI+G PNVGKSTLFNRLV KK+A+V + PG+TRDR G A + + F I+DTAG+ Sbjct: 1 MSFTVAIIGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRRPGDAKLVDLKFRIIDTAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + S+ +M QTE AI+EA L LF++D+KAG+TP D + LR++ P+++V+NK Sbjct: 61 EESSPDSLQGRMWAQTEAAIDEADLSLFVVDAKAGLTPADQTLAEMLRRRGKPVVVVANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI-ENNK 179 + R ++ FY+ ++L E ISAEH G +L I ++ P E + E N Sbjct: 121 SEARGSEGGFYDAFTLGLGEPCPISAEHGQGMLDLRDAIVAALGEERAFPPAEDVAETNV 180 Query: 180 RNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITR 239 E E + +KPLR+A+VGRPN GKSTLINR LG +RLLTG ++GITR Sbjct: 181 DIRPVAGEGTEDEEVEPAYDETKPLRVAIVGRPNAGKSTLINRFLGEDRLLTGPEAGITR 240 Query: 240 DSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPF 299 DS+S+ W+W+ I++FDTAGMR+ +++ E LE+ +V +++++R ET +++ DATIPF Sbjct: 241 DSISVEWDWRGRTIKMFDTAGMRRKAKVQEKLEKLSVADALRAIRFAETVVIVFDATIPF 300 Query: 300 EKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGR 359 EKQDL+IVD V G A VLA NKWD+V + LL DLR K + LPQ I ISG Sbjct: 301 EKQDLQIVDLVLREGRAAVLAFNKWDLVENWQALLVDLREKTERLLPQARGIRAVPISGH 360 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 TG GLD LM +++E +K+W RI+T+ LN WL+ Q+Q+PPP + R +LKY+TQ+++ Sbjct: 361 TGYGLDRLMQAIIETDKVWNRRISTARLNRWLESQQVQHPPPAVSGRRLKLKYMTQVKAR 420 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 PP F+I CT P +PESY RYLIN LR +F L G+PIR+ F++S+NP+ K Sbjct: 421 PPGFMISCTRPEAVPESYTRYLINGLRNDFDLPGVPIRVHFRASENPFESK 471 >gi|116253295|ref|YP_769133.1| GTP-binding protein EngA [Rhizobium leguminosarum bv. viciae 3841] gi|166225846|sp|Q1MDD6|DER_RHIL3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|115257943|emb|CAK09041.1| putative engA GTP-binding protein [Rhizobium leguminosarum bv. viciae 3841] Length = 473 Score = 471 bits (1211), Expect = e-130, Method: Compositional matrix adjust. Identities = 221/472 (46%), Positives = 319/472 (67%), Gaps = 5/472 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +T+AIVG PNVGKSTLFNRLV KK+A+V + PG+TRDR G A + G+ F I+DTAG+ Sbjct: 1 MSFTVAIVGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRRPGDARLMGLTFTIIDTAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + S+ +M QTE AI+EA L LF++D+K+G+TP D + LR++ P+++V+NK Sbjct: 61 EEADAESLQGRMRAQTEAAIDEADLSLFVVDAKSGLTPVDTDLAEMLRRRGKPVVLVANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQK--YPNHPLEMIENN 178 + R + FY+ Y+L E ISAEH G +L I + YP + + Sbjct: 121 SEARGSDSGFYDAYTLGLGEPTPISAEHGQGMLDLRDAIVAAIGEDRAYPEKEDVAVTDV 180 Query: 179 KRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 + S + + E + + + +KPLR+A+VGRPN GKSTLINR LG +RLLTG ++GIT Sbjct: 181 DIPQSSDEGD---EDEEPIYDDTKPLRVAIVGRPNAGKSTLINRFLGEDRLLTGPEAGIT 237 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RDS+S+ W+W+ I++FDTAGMR+ +R+ E LE+ +V +++++R ET +++ DATIP Sbjct: 238 RDSISVEWDWRGRTIKMFDTAGMRRKARVIEKLEKLSVADALRAIRFAETVVIVFDATIP 297 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 FEKQDL+IVD V G A VLA NKWDM+ D+ +L DLR K + LPQ I ISG Sbjct: 298 FEKQDLQIVDLVLREGRAAVLAFNKWDMIEDRQAVLADLREKTDRLLPQARGIRAVPISG 357 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 +TG GLD LM ++++ +K+W RI+T+ LN WL+ Q+Q+PPP + R +LKY+TQ+++ Sbjct: 358 QTGWGLDKLMQAIIDTDKVWNKRISTARLNRWLETQQVQHPPPAVSGRRIKLKYMTQVKA 417 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 PP+F+I CT + +PESY RYLIN LR +F + +PIR+ F+S NP+ K Sbjct: 418 RPPAFMISCTRSDALPESYTRYLINGLRADFDMPSVPIRIHFRSPDNPFEGK 469 >gi|241205814|ref|YP_002976910.1| GTP-binding protein EngA [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240859704|gb|ACS57371.1| small GTP-binding protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 474 Score = 469 bits (1208), Expect = e-130, Method: Compositional matrix adjust. Identities = 221/478 (46%), Positives = 320/478 (66%), Gaps = 16/478 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +T+AIVG PNVGKSTLFNRLV KK+A+V + PG+TRDR G A + G+ F I+DTAG+ Sbjct: 1 MSFTVAIVGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRRPGDARLMGLTFTIIDTAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + S+ +M QTE AI+EA L LF++D+K+G+TP D + LR++ P+++V+NK Sbjct: 61 EEADAESLQGRMRAQTEAAIDEADLSLFVVDAKSGLTPVDTDLAEMLRRRGKPVVLVANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQK--YPNHP------L 172 + R + FY+ Y+L E ISAEH G +L I + YP + Sbjct: 121 SEARGSDSGFYDAYTLGLGEPTPISAEHGQGMLDLRDAIVAAIGEDRAYPTKEDVAVTDV 180 Query: 173 EMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTG 232 ++ + + ++ +E E +KPLR+A+VGRPN GKSTLINR LG +RLLTG Sbjct: 181 DIPQTEGEDSDADEEPAYDE--------TKPLRVAIVGRPNAGKSTLINRFLGEDRLLTG 232 Query: 233 SQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVL 292 ++GITRDS+S+ W+W+ I++FDTAGMR+ +R+ E LE+ +V +++++R ET +++ Sbjct: 233 PEAGITRDSISVEWDWRGRTIKMFDTAGMRRKARVIEKLEKLSVADALRAIRFAETVVIV 292 Query: 293 LDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIY 352 DATIPFEKQDL+IVD V G A VLA NKWDM+ D+ +L DLR K + LPQ I Sbjct: 293 FDATIPFEKQDLQIVDLVLREGRAAVLAFNKWDMIEDRQAVLADLREKTDRLLPQARGIR 352 Query: 353 INTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKY 412 ISG+TG GLD LM ++++ +K+W RI+T+ LN WL+ Q+Q+PPP + R +LKY Sbjct: 353 AVPISGQTGWGLDKLMQAIIDTDKVWNKRISTARLNRWLETQQIQHPPPAVSGRRIKLKY 412 Query: 413 ITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +TQ+++ PP+F+I CT + +PESY RYLIN LR +F + +PIR+ F+S +NP+ K Sbjct: 413 MTQVKARPPAFMISCTRSDALPESYTRYLINGLRADFDMPSVPIRIHFRSPENPFEGK 470 >gi|209550425|ref|YP_002282342.1| GTP-binding protein EngA [Rhizobium leguminosarum bv. trifolii WSM2304] gi|238058977|sp|B5ZYX3|DER_RHILW RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|209536181|gb|ACI56116.1| small GTP-binding protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 473 Score = 469 bits (1206), Expect = e-130, Method: Compositional matrix adjust. Identities = 222/470 (47%), Positives = 319/470 (67%), Gaps = 1/470 (0%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +T+AIVG PNVGKSTLFNRLV KK+A+V + PG+TRDR G A + G+ F I+DTAG+ Sbjct: 1 MSFTVAIVGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRRPGDARLMGLTFTIIDTAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + S+ +M QTE AI+EA L LF++D+K G+TP D A+ LR++ P+++V+NK Sbjct: 61 EEADEESLQGRMRAQTEAAIDEADLSLFVVDAKNGLTPVDTALAEMLRRRGKPVVLVANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + R + FY+ Y+L E ISAEH G +L I + K + E + Sbjct: 121 SEARGSDSGFYDAYTLGLGEPTPISAEHGEGMLDLRDAIVEAIG-KDRAYAKEDVAVTNV 179 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 + E + + + +KPLR+A+VGRPN GKSTLINR LG +RLLTG ++GITRD Sbjct: 180 DISEAAGEGEDEDEEPLYDDTKPLRVAIVGRPNAGKSTLINRFLGEDRLLTGPEAGITRD 239 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+S+ W+W+ I++FDTAGMR+ +R+TE LE+ +V +++++R ET +++ DATIPFE Sbjct: 240 SISVEWDWRGRTIKMFDTAGMRRKARVTEKLEKLSVADALRAIRFAETVVIVFDATIPFE 299 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 KQDL+IVD V G A VLA NKWDM+ D+ +L DLR K + LPQ I ISG+T Sbjct: 300 KQDLQIVDLVLREGRAAVLAFNKWDMIEDRQAVLADLREKTDRLLPQARGIRAVPISGQT 359 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G GLD LM S+++ +++W RI+T+ LN WL+ Q+Q+PPP + R +LKY+TQ+++ P Sbjct: 360 GWGLDKLMQSIIDTDRVWNKRISTAKLNRWLETQQIQHPPPAVSGRRIKLKYMTQVKARP 419 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 P+F+I CT + +PESY RYLIN LR +F + +PIR+ F+S++NP+ K Sbjct: 420 PAFMISCTRSDALPESYTRYLINGLRADFDMPSVPIRIHFRSAENPFEGK 469 >gi|222086678|ref|YP_002545212.1| GTP-binding protein [Agrobacterium radiobacter K84] gi|254783132|sp|B9J7W1|DER_AGRRK RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|221724126|gb|ACM27282.1| GTP-binding protein [Agrobacterium radiobacter K84] Length = 475 Score = 468 bits (1205), Expect = e-130, Method: Compositional matrix adjust. Identities = 220/472 (46%), Positives = 320/472 (67%), Gaps = 2/472 (0%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +T+AIVG PNVGKSTLFNRLV KK+A+V + PG+TRDR G+A + + F IVDTAG+ Sbjct: 1 MSFTVAIVGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRRPGEAKLIDLRFRIVDTAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + ++ +M QTELAI+EA L LF++D+K G+T D + LRK+ P+++V+NK Sbjct: 61 EEADEETLEGRMRAQTELAIDEADLTLFVVDAKMGLTHVDKTLAEMLRKRGRPVVLVANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF--KQKYPNHPLEMIENN 178 + R + FY+ Y+L + ISAEH G +L I + Q +P E N Sbjct: 121 SEARGSDSGFYDAYTLGLGDPCPISAEHGQGMMDLRDAIVEAIGHDQAFPPRDDEAETNV 180 Query: 179 KRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 + E+ + + ++PLR+A+VGRPN GKSTLINR LG +RLLTG ++GIT Sbjct: 181 SIPRSAVGEDGEEIDEEPAYDETRPLRVAIVGRPNAGKSTLINRFLGEDRLLTGPEAGIT 240 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RDS+S+ W W+ +++FDTAGMR+ +R+TE LE+ +V +++++R ET +++ DATIP Sbjct: 241 RDSISVDWTWRGRTVKMFDTAGMRRKARVTEKLEKLSVADTLRAIRFAETVVIIFDATIP 300 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 FEKQDL+IVD V G A V+A NKWDM+ D+ +L DLR K + LPQ I I+G Sbjct: 301 FEKQDLQIVDLVIREGRAAVIAFNKWDMIEDRQAVLADLREKTDRLLPQARGIRAVPIAG 360 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 +TG+GLD LM ++++ +K+W RI T+ LN WL+ Q+Q+PPP + R +LKY+TQ+++ Sbjct: 361 QTGDGLDRLMQAIVDTDKVWNKRIATAKLNRWLETQQVQHPPPAVSGRRIKLKYMTQVKA 420 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 PP+F+I CT + +PESY RYLIN LR +F++ G+PIR+ F++S+NPY K Sbjct: 421 RPPAFMISCTRSDSLPESYVRYLINGLRADFAMPGVPIRIHFRTSENPYETK 472 >gi|150376651|ref|YP_001313247.1| GTP-binding protein EngA [Sinorhizobium medicae WSM419] gi|150031198|gb|ABR63314.1| small GTP-binding protein [Sinorhizobium medicae WSM419] Length = 477 Score = 468 bits (1204), Expect = e-130, Method: Compositional matrix adjust. Identities = 225/472 (47%), Positives = 317/472 (67%), Gaps = 2/472 (0%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +T+AI+G PNVGKSTLFNRLV KK+A+V + PG+TRDR G A + + F I+DTAG+ Sbjct: 1 MSFTVAIIGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRRPGDAKLVDLKFRIIDTAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 S+ +M QTE AI+EA L LF++D+KAG+TP D + LR++ P+++V+NK Sbjct: 61 EQSSPDSLQGRMWAQTEAAIDEADLSLFVVDAKAGLTPADKTLGEMLRRRGKPVVVVANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIE--NN 178 + R ++ FY+ ++L E ISAEH G +L I ++ P E + N Sbjct: 121 SEARGSEGGFYDAFTLGLGEPCPISAEHGQGMLDLRDAIVAALGEERAFPPAEDVAETNV 180 Query: 179 KRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 + E E V + +KPLR+A+VGRPN GKSTLINR LG +RLLTG ++GIT Sbjct: 181 DIRADIGSEGPGEEEIEPVYDETKPLRVAIVGRPNAGKSTLINRFLGEDRLLTGPEAGIT 240 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RDS+S+ W+W+ I++FDTAGMR+ +++ E LE+ +V +++++R ET +++ DATIP Sbjct: 241 RDSISVEWDWRGRTIKMFDTAGMRRKAKVQEKLEKLSVADALRAIRFAETVVIVFDATIP 300 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 FEKQDL+IVD V G A VLA NKWD+V + LL DLR K + LPQ I ISG Sbjct: 301 FEKQDLQIVDLVIREGRAAVLAFNKWDLVENWQELLADLREKTERLLPQARGIRAVPISG 360 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 TG GLD LM +++E +K+W RI+T+ LN WL+ Q+Q+PPP + R +LKY+TQ+++ Sbjct: 361 HTGYGLDRLMQAIIETDKVWNRRISTARLNRWLESQQVQHPPPAVSGRRLKLKYMTQVKA 420 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 PP F+I CT P +PESY RYLIN LR +F L+G+PIR+ F++S+NPY K Sbjct: 421 RPPGFMISCTRPEAVPESYTRYLINGLRNDFDLAGVPIRIHFRASENPYESK 472 >gi|227822913|ref|YP_002826885.1| GTP-binding protein EngA [Sinorhizobium fredii NGR234] gi|254783163|sp|C3MG60|DER_RHISN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|227341914|gb|ACP26132.1| GTP-binding protein, essential for cell growth [Sinorhizobium fredii NGR234] Length = 476 Score = 466 bits (1198), Expect = e-129, Method: Compositional matrix adjust. Identities = 223/471 (47%), Positives = 312/471 (66%), Gaps = 1/471 (0%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +T+AIVG PNVGKSTLFNRLV KK+A+V + PG+TRDR G A + + F I+DTAG+ Sbjct: 1 MSFTVAIVGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRRPGDAKLVDLKFRIIDTAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 S+ +M QTE AI+EA L LF+ID+KAG+TP D + LR++ P+I+V+NK Sbjct: 61 EQSAPDSLQGRMWAQTEQAIDEADLSLFVIDAKAGLTPADETLAEMLRRRGKPVIVVANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI-ENNK 179 + R + FY+ ++L E ISAEH G +L I ++ P E + E + Sbjct: 121 SEARGSDGGFYDAFTLGLGEPCPISAEHGQGMLDLRDAIVAALGEERAFPPREDVAETDV 180 Query: 180 RNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITR 239 + E + +KPLR+A+VGRPN GKSTLINR LG +RLLTG ++GITR Sbjct: 181 DIRPAGAGGGEDEESEPAYDKTKPLRVAIVGRPNAGKSTLINRFLGEDRLLTGPEAGITR 240 Query: 240 DSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPF 299 DS+S+ W W+ I++FDTAGMR+ +++ E LE+ +V +++++R ET +++ DATIPF Sbjct: 241 DSISVEWEWRGRTIKMFDTAGMRRKAKVQEKLEKLSVADALRAIRFAETVVIIFDATIPF 300 Query: 300 EKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGR 359 EKQDL+IVD V G A VLA NKWD+V D +L DLR K + LPQ I ISG Sbjct: 301 EKQDLQIVDLVLREGRAAVLAFNKWDLVEDWQAVLADLREKTERLLPQARGIRAVPISGH 360 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 TG GLD LM +++E +K+W RI+T+ LN WL+ Q+Q+PPP + R +LKY+TQ+++ Sbjct: 361 TGYGLDRLMQAIIETDKVWNRRISTARLNRWLESQQVQHPPPAVSGRRLKLKYMTQVKAR 420 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 PP F+I CT P +PESY RYLIN LR +F + G+PIR+ F+++ NP+ K Sbjct: 421 PPGFMISCTRPEAVPESYVRYLINGLRNDFDMPGVPIRVHFRAADNPFESK 471 >gi|222149419|ref|YP_002550376.1| GTP-binding protein EngA [Agrobacterium vitis S4] gi|254783133|sp|B9JZQ5|DER_AGRVS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|221736402|gb|ACM37365.1| GTP-binding protein [Agrobacterium vitis S4] Length = 474 Score = 456 bits (1173), Expect = e-126, Method: Compositional matrix adjust. Identities = 217/476 (45%), Positives = 322/476 (67%), Gaps = 12/476 (2%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +T+AIVG PNVGKSTLFNRLV KK+A+V + PG+TRDR G+A + + F+IVDTAG+ Sbjct: 1 MSFTVAIVGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRRPGEAKLVDLRFHIVDTAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + ++ +M QTE+AI+EA L LF++D+K G+T D A+ LRK+ P+++V+NK Sbjct: 61 EEAGADTLEGRMRAQTEIAIDEADLSLFVVDAKMGLTHVDKALADMLRKRGKPVVLVANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF--KQKYPNHPLEMIENN 178 + R + FY+ ++L E V ISAEH G +L I + + +P +++ Sbjct: 121 SEARGSDGGFYDAFTLGLGEPVPISAEHGQGMIDLRDAIVEAIGVDRAFPE------DDD 174 Query: 179 KRNEESPKENITSEGKSSVKNIS----KPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQ 234 E T EG+ ++++ KPLR+A+VGRPN GKSTLINR LG +RLLTG + Sbjct: 175 DVAETDIVLRPTVEGEDDEEDLAYDDTKPLRVAIVGRPNAGKSTLINRFLGEDRLLTGPE 234 Query: 235 SGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLD 294 +GITRDS+S+ W+W+ I++FDTAGMR+ +R+ E LE+ +V +++++R ET +++ D Sbjct: 235 AGITRDSISVEWDWRGRTIKMFDTAGMRRKARVIEKLEKLSVADTLRAIRFAETVVIVFD 294 Query: 295 ATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYIN 354 ATIPFEKQD++IVD V G A VLA NKWD+V D +L +LR K + LPQ I Sbjct: 295 ATIPFEKQDIQIVDLVLREGRAAVLAFNKWDLVEDPQAVLAELREKTERLLPQARGIRAV 354 Query: 355 TISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYIT 414 ++G+TG GL+ LM S+++ + +W RI+T+ LN WL Q Q+PPP + R +LKY+T Sbjct: 355 PMAGQTGYGLEKLMQSIIDTDMVWNKRISTAKLNRWLDSVQTQHPPPAVSGRRLKLKYMT 414 Query: 415 QIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 Q+++ PP+F+I CT P+ +PESY RYL N LR +F++ G+PIR+ ++S+NP+ K Sbjct: 415 QVKARPPAFMISCTRPDSVPESYIRYLTNGLRADFNMPGVPIRIHLKASENPFENK 470 >gi|325293656|ref|YP_004279520.1| GTP-binding protein engA [Agrobacterium sp. H13-3] gi|325061509|gb|ADY65200.1| GTP-binding protein engA [Agrobacterium sp. H13-3] Length = 476 Score = 455 bits (1170), Expect = e-126, Method: Compositional matrix adjust. Identities = 215/471 (45%), Positives = 315/471 (66%), Gaps = 1/471 (0%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +T+AIVG PNVGKSTLFNRLV KK+A+V + PG+TRDR G A + + F I+DTAG+ Sbjct: 1 MSFTVAIVGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRRPGDAKLVDLRFTIIDTAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 ++ +M QTE AI+EA + LF++D+KAG+TP D + LR++ P+++V+NK Sbjct: 61 EQSGPETLQGRMWAQTEAAIDEADVTLFVVDAKAGLTPADETLAEMLRRRGKPVVLVANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHP-LEMIENNK 179 + R + FY+ ++L + ISAEH G +L I + + P ++ E + Sbjct: 121 SEARGSDAGFYDAFTLGLGDPCAISAEHGQGMIDLRDAIVEAIGEDVAFPPEVDEAETDI 180 Query: 180 RNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITR 239 + + E + V + +KPLR+A++GRPN GKSTLINR LG +RLLTG ++GITR Sbjct: 181 VLPRTEPGSEEEEEEEPVYDETKPLRVAIIGRPNAGKSTLINRFLGEDRLLTGPEAGITR 240 Query: 240 DSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPF 299 DS+S+ W+W+ I++FDTAGMR+ +R+TE LE+ +V S++S+R ET +++ D+TIPF Sbjct: 241 DSISVEWDWRGRTIKMFDTAGMRRKARVTEKLEKLSVADSLRSIRFAETVVIVFDSTIPF 300 Query: 300 EKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGR 359 EKQDL++VD V G A VLA NKWD+V D L DLR K + LPQ I +SG+ Sbjct: 301 EKQDLQLVDLVIREGRAAVLAFNKWDLVEDPQAFLADLREKTERLLPQARGIRAVPMSGQ 360 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 TG GLD LM ++++ +K+W RI+T+ LN WL Q+PPP + R +LKY+TQ+++ Sbjct: 361 TGYGLDRLMQNIIDTDKIWNRRISTAKLNRWLDAQTTQHPPPAVSGRRLKLKYMTQVKAR 420 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 PP+F+I CT P IPESY RYL+N LR +F + G+P+R+ ++ S+NP+ K Sbjct: 421 PPAFMISCTRPEAIPESYTRYLVNGLRKDFDMPGVPLRVHYRGSENPFESK 471 >gi|15889576|ref|NP_355257.1| GTP-binding protein EngA [Agrobacterium tumefaciens str. C58] gi|26006719|sp|Q8UD28|DER_AGRT5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|15157462|gb|AAK88042.1| GTP-binding protein [Agrobacterium tumefaciens str. C58] Length = 476 Score = 452 bits (1163), Expect = e-125, Method: Compositional matrix adjust. Identities = 217/471 (46%), Positives = 313/471 (66%), Gaps = 1/471 (0%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +T+AIVG PNVGKSTLFNRLV KK+A+V + PG+TRDR G A + + F I+DTAG+ Sbjct: 1 MSFTVAIVGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRRPGDAKLIDLRFTIIDTAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 ++ +M QTE AI+EA + LF+ID+KAG+TP D + LR++ P+++V+NK Sbjct: 61 EQSGPETLQGRMWAQTEAAIDEADVTLFVIDAKAGLTPADETLGEMLRRRGKPVVLVANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHP-LEMIENNK 179 + R + FY+ ++L E +SAEH G +L I + + P ++ E + Sbjct: 121 SEARGSDAGFYDAFTLGLGEPCPVSAEHGQGMIDLRDAIVEAIGEDMAFPPDVDEAETDI 180 Query: 180 RNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITR 239 + + E + V + +KPLR+A++GRPN GKSTLINR LG +RLLTG ++GITR Sbjct: 181 VLPRTEPGSEEEEDEEPVYDETKPLRVAIIGRPNAGKSTLINRFLGEDRLLTGPEAGITR 240 Query: 240 DSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPF 299 DS+S+ W+W+ I++FDTAGMR+ +++TE LE+ +V S++S+R ET +++ D+TIPF Sbjct: 241 DSISVEWDWRGRTIKMFDTAGMRRKAKVTEKLEKLSVADSLRSIRFAETVVIVFDSTIPF 300 Query: 300 EKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGR 359 EKQDL++VD V G A VLA NKWD+V D L DLR K + LPQ I +SG+ Sbjct: 301 EKQDLQLVDLVIREGRAAVLAFNKWDLVEDPQAYLADLREKTERLLPQARGIRAVPMSGQ 360 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 TG GLD LM S+++ +K W RI+T+ LN WL Q+PPP + R +LKY+TQ+++ Sbjct: 361 TGYGLDRLMQSIIDTDKTWNRRISTAKLNRWLDAQTTQHPPPAVSGRRLKLKYMTQVKAR 420 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 PP+F+I CT P IPESY RYL+N LR +F + G+PIR+ ++ S NP+ K Sbjct: 421 PPAFMISCTRPEAIPESYTRYLVNGLRKDFDMPGVPIRVHYRGSDNPFESK 471 >gi|304391252|ref|ZP_07373196.1| ribosome-associated GTPase EngA [Ahrensia sp. R2A130] gi|303296608|gb|EFL90964.1| ribosome-associated GTPase EngA [Ahrensia sp. R2A130] Length = 478 Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust. Identities = 209/469 (44%), Positives = 307/469 (65%), Gaps = 2/469 (0%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +T+A+ G PNVGKSTLFNRLV K++A+V + PG+TRDR G A I + F ++DTAG+ Sbjct: 1 MTFTVAVAGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDRRSGNARIGDIKFEVIDTAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + S+ +M QTE AI +A++ LFLID++AG+TP D + + LR+ P+I+V+NK Sbjct: 61 EEADQASLEGRMRAQTEQAIIDANVTLFLIDARAGVTPMDKSFATMLRRAGKPVILVANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 ++ R FYE + + F E V ISAEH G ++L + + + + E E+ K Sbjct: 121 VEGRKGDDGFYEAFEMGFGEPVPISAEHGEGMADLRNALVEAVGEDVAFGKNEPTEDEKE 180 Query: 181 NEESPKENITSEGKSSVK--NISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 E +E + + ++PL+I +VGRPN GKSTLINR+LG +RLLTG ++GIT Sbjct: 181 EASFDLEAFEAEEDETEPEYDNTRPLKICIVGRPNAGKSTLINRMLGEDRLLTGPEAGIT 240 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RDS+S+ W W+ I++FDTAGMR+ +R+ E LE+ +V ++++++ E +++ DATIP Sbjct: 241 RDSISVDWEWQGRSIKLFDTAGMRRKARVQEKLEKLSVHDALRAIQYAEVVVIMFDATIP 300 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 FEKQDL IVD + G A VLA NKWD+V DK L++L K + LPQ+ + T+SG Sbjct: 301 FEKQDLHIVDLIHREGRAPVLAFNKWDLVPDKQAALKELHEKTERLLPQLRGLRTVTLSG 360 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 ++G+GLD LM +V++ +K W R+ TS LN WL Q +PPP + R R KYITQ ++ Sbjct: 361 QSGKGLDRLMEAVIDADKTWNRRVATSKLNQWLDDVQAHHPPPAVSGRRIRFKYITQAKT 420 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 PP+F+ CT P +P SY+RYL+N LR F L G+P+R+ + +NPY Sbjct: 421 RPPTFVAQCTRPEGLPASYERYLLNDLRATFKLPGVPLRLYLRKGENPY 469 >gi|17987833|ref|NP_540467.1| GTP-binding protein EngA [Brucella melitensis bv. 1 str. 16M] gi|225851918|ref|YP_002732151.1| GTP-binding protein EngA [Brucella melitensis ATCC 23457] gi|256044100|ref|ZP_05447011.1| GTP-binding protein EngA [Brucella melitensis bv. 1 str. Rev.1] gi|256112898|ref|ZP_05453814.1| GTP-binding protein EngA [Brucella melitensis bv. 3 str. Ether] gi|256264570|ref|ZP_05467102.1| GTP-binding protein engA [Brucella melitensis bv. 2 str. 63/9] gi|260563458|ref|ZP_05833944.1| GTP-binding protein engA [Brucella melitensis bv. 1 str. 16M] gi|265990512|ref|ZP_06103069.1| GTP-binding protein engA [Brucella melitensis bv. 1 str. Rev.1] gi|265994340|ref|ZP_06106897.1| GTP-binding protein engA [Brucella melitensis bv. 3 str. Ether] gi|26006723|sp|Q8YFH2|DER_BRUME RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|254783140|sp|C0RH89|DER_BRUMB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|17983561|gb|AAL52731.1| gtp-binding protein [Brucella melitensis bv. 1 str. 16M] gi|225640283|gb|ACO00197.1| small GTP-binding protein [Brucella melitensis ATCC 23457] gi|260153474|gb|EEW88566.1| GTP-binding protein engA [Brucella melitensis bv. 1 str. 16M] gi|262765453|gb|EEZ11242.1| GTP-binding protein engA [Brucella melitensis bv. 3 str. Ether] gi|263001296|gb|EEZ13871.1| GTP-binding protein engA [Brucella melitensis bv. 1 str. Rev.1] gi|263094935|gb|EEZ18643.1| GTP-binding protein engA [Brucella melitensis bv. 2 str. 63/9] gi|326408416|gb|ADZ65481.1| GTP-binding protein EngA [Brucella melitensis M28] gi|326538130|gb|ADZ86345.1| small GTP-binding protein [Brucella melitensis M5-90] Length = 483 Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust. Identities = 207/485 (42%), Positives = 307/485 (63%), Gaps = 22/485 (4%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +T+AIVG PNVGKSTLFNRLV +K+A+V + PG+TRDR A + + F ++DTAG+ Sbjct: 1 MGFTLAIVGRPNVGKSTLFNRLVGRKLALVDDLPGVTRDRRIHDAKLYDLKFQVIDTAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + N S+ +M QTE AI+EA +LF+ID+KAGITP D +R+ P+++V+NK Sbjct: 61 EEAANDSLEARMRAQTEAAISEADAVLFVIDAKAGITPADSTFAEAVRRSGKPVVLVANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + R ++ Y+ + L E ISAEH G +L I ++ + E + +R Sbjct: 121 AEARGSEAGMYDAFQLGLGEPCPISAEHGQGMPDLRDAIVELLGE-------ERVFAEER 173 Query: 181 NEESPKENITSEGKSSV---------------KNISKPLRIAVVGRPNVGKSTLINRLLG 225 EE+ E T ++ + +KPLRIA+VGRPN GKSTLIN +LG Sbjct: 174 QEEAADEVFTPAAVGALVGDDIEDPDAEEIPAYDATKPLRIAIVGRPNAGKSTLINTMLG 233 Query: 226 YNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRT 285 +RLLTG ++GITRDS+S W W I++FDTAGMR+ +R+ E LE+ +V S++++R Sbjct: 234 EDRLLTGPEAGITRDSISADWEWHGRKIKLFDTAGMRRKARVQEKLEKLSVADSLRAIRF 293 Query: 286 CETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNL 345 E I++LDATIPFEKQDL+I D + G A V+A NKWD++ D+ +L DL K + L Sbjct: 294 AEVVIIVLDATIPFEKQDLQIADLIIREGRAPVIAFNKWDLIEDRQMVLADLYEKTARLL 353 Query: 346 PQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFN 405 PQ+ + ISG G+G+D LM +V++ +++W RI+T LN WL+ PPP + Sbjct: 354 PQVRGLRAVPISGERGQGIDKLMENVVKTHEIWNRRISTGRLNRWLEGVIAHQPPPAVSG 413 Query: 406 RYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 R ++KY+TQ+++ PP F++ C+ P+ +P+SY RYLIN LR F + G+PIR+ ++S N Sbjct: 414 RRLKVKYMTQVKTRPPGFVVSCSRPDAMPQSYVRYLINGLRETFDMPGVPIRLSLRTSDN 473 Query: 466 PYIKK 470 P+ + Sbjct: 474 PFAGR 478 >gi|62289366|ref|YP_221159.1| GTP-binding protein EngA [Brucella abortus bv. 1 str. 9-941] gi|82699291|ref|YP_413865.1| GTP-binding protein EngA [Brucella melitensis biovar Abortus 2308] gi|189023620|ref|YP_001934388.1| GTP-binding protein EngA [Brucella abortus S19] gi|237814855|ref|ZP_04593853.1| small GTP-binding protein [Brucella abortus str. 2308 A] gi|254688683|ref|ZP_05151937.1| GTP-binding protein EngA [Brucella abortus bv. 6 str. 870] gi|254696810|ref|ZP_05158638.1| GTP-binding protein EngA [Brucella abortus bv. 2 str. 86/8/59] gi|254729717|ref|ZP_05188295.1| GTP-binding protein EngA [Brucella abortus bv. 4 str. 292] gi|256256930|ref|ZP_05462466.1| GTP-binding protein EngA [Brucella abortus bv. 9 str. C68] gi|260545880|ref|ZP_05821621.1| GTP-binding protein engA [Brucella abortus NCTC 8038] gi|260754159|ref|ZP_05866507.1| GTP-binding protein engA [Brucella abortus bv. 6 str. 870] gi|260757379|ref|ZP_05869727.1| GTP-binding protein engA [Brucella abortus bv. 4 str. 292] gi|260761203|ref|ZP_05873546.1| GTP-binding protein engA [Brucella abortus bv. 2 str. 86/8/59] gi|260883184|ref|ZP_05894798.1| GTP-binding protein engA [Brucella abortus bv. 9 str. C68] gi|297247781|ref|ZP_06931499.1| ribosome-associated GTPase EngA [Brucella abortus bv. 5 str. B3196] gi|75505338|sp|Q57EY6|DER_BRUAB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|123546332|sp|Q2YM98|DER_BRUA2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|238691492|sp|B2S9M3|DER_BRUA1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|62195498|gb|AAX73798.1| GTP-binding protein [Brucella abortus bv. 1 str. 9-941] gi|82615392|emb|CAJ10361.1| Uridine kinase:ATP/GTP-binding site motif A (P-loop):Ras GTPase superfamily:GTP-binding protein, HSR1-related:Small GTP-bindi [Brucella melitensis biovar Abortus 2308] gi|189019192|gb|ACD71914.1| GTP-binding protein EngA [Brucella abortus S19] gi|237789692|gb|EEP63902.1| small GTP-binding protein [Brucella abortus str. 2308 A] gi|260097287|gb|EEW81162.1| GTP-binding protein engA [Brucella abortus NCTC 8038] gi|260667697|gb|EEX54637.1| GTP-binding protein engA [Brucella abortus bv. 4 str. 292] gi|260671635|gb|EEX58456.1| GTP-binding protein engA [Brucella abortus bv. 2 str. 86/8/59] gi|260674267|gb|EEX61088.1| GTP-binding protein engA [Brucella abortus bv. 6 str. 870] gi|260872712|gb|EEX79781.1| GTP-binding protein engA [Brucella abortus bv. 9 str. C68] gi|297174950|gb|EFH34297.1| ribosome-associated GTPase EngA [Brucella abortus bv. 5 str. B3196] Length = 483 Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust. Identities = 207/485 (42%), Positives = 306/485 (63%), Gaps = 22/485 (4%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +T+AIVG PNVGKSTLFNRLV +K+A+V + PG+TRDR A + + F ++DTAG+ Sbjct: 1 MGFTLAIVGRPNVGKSTLFNRLVGRKLALVDDLPGVTRDRRIHDAKLYDLKFQVIDTAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + N S+ +M QTE AI+EA +LF+ID+KAGITP D +R+ P+++V+NK Sbjct: 61 EEAANDSLEARMRAQTEAAISEADAVLFVIDAKAGITPADSTFAEAVRRSGKPVVLVANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + R ++ Y+ + L E ISAEH G +L I ++ + E + +R Sbjct: 121 AEARGSEAGMYDAFQLGLGEPCPISAEHGQGMPDLRDAIVELLGE-------ERVFAEER 173 Query: 181 NEESPKENITSEGKSSV---------------KNISKPLRIAVVGRPNVGKSTLINRLLG 225 EE+ E T ++ + +KPLRIA+VGRPN GKSTLIN +LG Sbjct: 174 QEEAADEVFTPAAVGALVGDDIEDPDAEEIPAYDATKPLRIAIVGRPNAGKSTLINTMLG 233 Query: 226 YNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRT 285 +RLLTG ++GITRDS+S W W I +FDTAGMR+ +R+ E LE+ +V S++++R Sbjct: 234 EDRLLTGPEAGITRDSISADWEWHGRKINLFDTAGMRRKARVQEKLEKLSVADSLRAIRF 293 Query: 286 CETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNL 345 E I++LDATIPFEKQDL+I D + G A V+A NKWD++ D+ +L DL K + L Sbjct: 294 AEVVIIVLDATIPFEKQDLQIADLIIREGRAPVIAFNKWDLIEDRQMVLADLYEKTARLL 353 Query: 346 PQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFN 405 PQ+ + ISG G+G+D LM +V++ +++W RI+T LN WL+ PPP + Sbjct: 354 PQVRGLRAVPISGERGQGIDKLMENVVKTHEIWNRRISTGRLNRWLEGVIAHQPPPAVSG 413 Query: 406 RYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 R ++KY+TQ+++ PP F++ C+ P+ +P+SY RYLIN LR F + G+PIR+ ++S N Sbjct: 414 RRLKVKYMTQVKTRPPGFVVSCSRPDAMPQSYVRYLINGLRETFDMPGVPIRLSLRTSDN 473 Query: 466 PYIKK 470 P+ + Sbjct: 474 PFAGR 478 >gi|306842332|ref|ZP_07474991.1| small GTP-binding protein [Brucella sp. BO2] gi|306287548|gb|EFM59007.1| small GTP-binding protein [Brucella sp. BO2] Length = 483 Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust. Identities = 206/485 (42%), Positives = 306/485 (63%), Gaps = 22/485 (4%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +T+AIVG PNVGKSTLFNRLV +K+A+V + PG+TRDR A + + F ++DTAG+ Sbjct: 1 MGFTLAIVGRPNVGKSTLFNRLVGRKLALVDDLPGVTRDRRIHDARLYDLKFQVIDTAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + N S+ +M QTE AI+EA +LF+ID+KAGITP D +R+ P+++V+NK Sbjct: 61 EEAANDSLEARMRAQTEAAISEADAVLFVIDAKAGITPADSTFAEAVRRSGKPVVLVANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + R ++ Y+ + L E ISAEH G +L I ++ + E + +R Sbjct: 121 AEARGSEAGMYDAFQLGLGEPCPISAEHGQGMPDLRDAIVELLGE-------ERVFAEER 173 Query: 181 NEESPKENITSEGKSSV---------------KNISKPLRIAVVGRPNVGKSTLINRLLG 225 EE+ E T ++ + +KPLRIA+VGRPN GKSTLIN +LG Sbjct: 174 QEEAADEVFTPAAVGALVGDDIEDPDAEEIPAYDATKPLRIAIVGRPNAGKSTLINTMLG 233 Query: 226 YNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRT 285 +RLLTG ++GITRDS+S W W I++FDTAGMR+ +R+ E LE+ +V ++++R Sbjct: 234 EDRLLTGPEAGITRDSISADWEWHGRKIKLFDTAGMRRKARVQEKLEKLSVADGLRAIRF 293 Query: 286 CETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNL 345 E I++LDATIPFEKQDL+I D + G A V+A NKWD++ D+ +L DL K + L Sbjct: 294 AEVVIIVLDATIPFEKQDLQIADLIIREGRAPVIAFNKWDLIEDRQMVLADLYEKTARLL 353 Query: 346 PQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFN 405 PQ+ + ISG G+G+D LM +V++ +++W RI+T LN WL+ PPP + Sbjct: 354 PQVRGLRAVPISGERGQGIDKLMENVVKTHEIWNRRISTGRLNRWLEGVIAHQPPPAVSG 413 Query: 406 RYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 R ++KY+TQ+++ PP F++ C+ P+ +P+SY RYLIN LR F + G+PIR+ ++S N Sbjct: 414 RRLKVKYMTQVKTRPPGFVVSCSRPDAMPQSYVRYLINGLRETFDMPGVPIRLSLRTSDN 473 Query: 466 PYIKK 470 P+ + Sbjct: 474 PFAGR 478 >gi|23501279|ref|NP_697406.1| GTP-binding protein EngA [Brucella suis 1330] gi|161618354|ref|YP_001592241.1| GTP-binding protein EngA [Brucella canis ATCC 23365] gi|225626893|ref|ZP_03784932.1| small GTP-binding protein [Brucella ceti str. Cudo] gi|254703735|ref|ZP_05165563.1| GTP-binding protein EngA [Brucella suis bv. 3 str. 686] gi|254707885|ref|ZP_05169713.1| GTP-binding protein EngA [Brucella pinnipedialis M163/99/10] gi|254709531|ref|ZP_05171342.1| GTP-binding protein EngA [Brucella pinnipedialis B2/94] gi|254713052|ref|ZP_05174863.1| GTP-binding protein EngA [Brucella ceti M644/93/1] gi|254716595|ref|ZP_05178406.1| GTP-binding protein EngA [Brucella ceti M13/05/1] gi|254718562|ref|ZP_05180373.1| GTP-binding protein EngA [Brucella sp. 83/13] gi|256031025|ref|ZP_05444639.1| GTP-binding protein EngA [Brucella pinnipedialis M292/94/1] gi|256060517|ref|ZP_05450686.1| GTP-binding protein EngA [Brucella neotomae 5K33] gi|256159079|ref|ZP_05456908.1| GTP-binding protein EngA [Brucella ceti M490/95/1] gi|256254428|ref|ZP_05459964.1| GTP-binding protein EngA [Brucella ceti B1/94] gi|256368832|ref|YP_003106338.1| GTP-binding protein EngA [Brucella microti CCM 4915] gi|260168157|ref|ZP_05754968.1| GTP-binding protein EngA [Brucella sp. F5/99] gi|260567011|ref|ZP_05837481.1| GTP-binding protein engA [Brucella suis bv. 4 str. 40] gi|261218394|ref|ZP_05932675.1| GTP-binding protein engA [Brucella ceti M13/05/1] gi|261221596|ref|ZP_05935877.1| GTP-binding protein engA [Brucella ceti B1/94] gi|261315376|ref|ZP_05954573.1| GTP-binding protein engA [Brucella pinnipedialis M163/99/10] gi|261317057|ref|ZP_05956254.1| GTP-binding protein engA [Brucella pinnipedialis B2/94] gi|261320757|ref|ZP_05959954.1| GTP-binding protein engA [Brucella ceti M644/93/1] gi|261324511|ref|ZP_05963708.1| GTP-binding protein engA [Brucella neotomae 5K33] gi|261754380|ref|ZP_05998089.1| GTP-binding protein engA [Brucella suis bv. 3 str. 686] gi|261757615|ref|ZP_06001324.1| GTP-binding protein engA [Brucella sp. F5/99] gi|265983537|ref|ZP_06096272.1| GTP-binding protein engA [Brucella sp. 83/13] gi|265988095|ref|ZP_06100652.1| GTP-binding protein engA [Brucella pinnipedialis M292/94/1] gi|265997559|ref|ZP_06110116.1| GTP-binding protein engA [Brucella ceti M490/95/1] gi|294851760|ref|ZP_06792433.1| ribosome-associated GTPase EngA [Brucella sp. NVSL 07-0026] gi|306837298|ref|ZP_07470181.1| small GTP-binding protein [Brucella sp. NF 2653] gi|306845011|ref|ZP_07477592.1| small GTP-binding protein [Brucella sp. BO1] gi|37999701|sp|Q8G2E8|DER_BRUSU RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|189037138|sp|A9M8F4|DER_BRUC2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|23347166|gb|AAN29321.1| GTP-binding protein [Brucella suis 1330] gi|161335165|gb|ABX61470.1| small GTP-binding protein domain [Brucella canis ATCC 23365] gi|225618550|gb|EEH15593.1| small GTP-binding protein [Brucella ceti str. Cudo] gi|255998990|gb|ACU47389.1| GTP-binding protein EngA [Brucella microti CCM 4915] gi|260156529|gb|EEW91609.1| GTP-binding protein engA [Brucella suis bv. 4 str. 40] gi|260920180|gb|EEX86833.1| GTP-binding protein engA [Brucella ceti B1/94] gi|260923483|gb|EEX90051.1| GTP-binding protein engA [Brucella ceti M13/05/1] gi|261293447|gb|EEX96943.1| GTP-binding protein engA [Brucella ceti M644/93/1] gi|261296280|gb|EEX99776.1| GTP-binding protein engA [Brucella pinnipedialis B2/94] gi|261300491|gb|EEY03988.1| GTP-binding protein engA [Brucella neotomae 5K33] gi|261304402|gb|EEY07899.1| GTP-binding protein engA [Brucella pinnipedialis M163/99/10] gi|261737599|gb|EEY25595.1| GTP-binding protein engA [Brucella sp. F5/99] gi|261744133|gb|EEY32059.1| GTP-binding protein engA [Brucella suis bv. 3 str. 686] gi|262552027|gb|EEZ08017.1| GTP-binding protein engA [Brucella ceti M490/95/1] gi|264660292|gb|EEZ30553.1| GTP-binding protein engA [Brucella pinnipedialis M292/94/1] gi|264662129|gb|EEZ32390.1| GTP-binding protein engA [Brucella sp. 83/13] gi|294820349|gb|EFG37348.1| ribosome-associated GTPase EngA [Brucella sp. NVSL 07-0026] gi|306274643|gb|EFM56432.1| small GTP-binding protein [Brucella sp. BO1] gi|306407611|gb|EFM63807.1| small GTP-binding protein [Brucella sp. NF 2653] Length = 483 Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust. Identities = 206/485 (42%), Positives = 306/485 (63%), Gaps = 22/485 (4%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +T+AIVG PNVGKSTLFNRLV +K+A+V + PG+TRDR A + + F ++DTAG+ Sbjct: 1 MGFTLAIVGRPNVGKSTLFNRLVGRKLALVDDLPGVTRDRRIHDAKLYDLKFQVIDTAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + N S+ +M QTE AI+EA +LF+ID+KAGITP D +R+ P+++V+NK Sbjct: 61 EEAANDSLEARMRAQTEAAISEADAVLFVIDAKAGITPADSTFAEAVRRSGKPVVLVANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + R ++ Y+ + L E ISAEH G +L I ++ + E + +R Sbjct: 121 AEARGSEAGMYDAFQLGLGEPCPISAEHGQGMPDLRDAIVELLGE-------ERVFAEER 173 Query: 181 NEESPKENITSEGKSSV---------------KNISKPLRIAVVGRPNVGKSTLINRLLG 225 EE+ E T ++ + +KPLRIA+VGRPN GKSTLIN +LG Sbjct: 174 QEEAADEVFTPAAVGALVGDDIEDPDAEEIPAYDATKPLRIAIVGRPNAGKSTLINTMLG 233 Query: 226 YNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRT 285 +RLLTG ++GITRDS+S W W I++FDTAGMR+ +R+ E LE+ +V ++++R Sbjct: 234 EDRLLTGPEAGITRDSISADWEWHGRKIKLFDTAGMRRKARVQEKLEKLSVADGLRAIRF 293 Query: 286 CETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNL 345 E I++LDATIPFEKQDL+I D + G A V+A NKWD++ D+ +L DL K + L Sbjct: 294 AEVVIIVLDATIPFEKQDLQIADLIIREGRAPVIAFNKWDLIEDRQMVLADLYEKTARLL 353 Query: 346 PQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFN 405 PQ+ + ISG G+G+D LM +V++ +++W RI+T LN WL+ PPP + Sbjct: 354 PQVRGLRAVPISGERGQGIDKLMENVVKTHEIWNRRISTGRLNRWLEGVIAHQPPPAVSG 413 Query: 406 RYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 R ++KY+TQ+++ PP F++ C+ P+ +P+SY RYLIN LR F + G+PIR+ ++S N Sbjct: 414 RRLKVKYMTQVKTRPPGFVVSCSRPDAMPQSYVRYLINGLRETFDMPGVPIRLSLRTSDN 473 Query: 466 PYIKK 470 P+ + Sbjct: 474 PFAGR 478 >gi|163842662|ref|YP_001627066.1| GTP-binding protein EngA [Brucella suis ATCC 23445] gi|189037139|sp|B0CK66|DER_BRUSI RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|163673385|gb|ABY37496.1| small GTP-binding protein domain [Brucella suis ATCC 23445] Length = 483 Score = 436 bits (1120), Expect = e-120, Method: Compositional matrix adjust. Identities = 206/485 (42%), Positives = 306/485 (63%), Gaps = 22/485 (4%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +T+AIVG PNVGKSTLFNRLV +K+A+V + PG+TRDR A + + F ++DTAG+ Sbjct: 1 MGFTLAIVGRPNVGKSTLFNRLVGRKLALVDDLPGVTRDRRIHDAKLYDLKFQLIDTAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + N S+ +M QTE AI+EA +LF+ID+KAGITP D +R+ P+++V+NK Sbjct: 61 EEAANDSLEARMRAQTEAAISEADAVLFVIDAKAGITPADSTFAEAVRRSGKPVVLVANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + R ++ Y+ + L E ISAEH G +L I ++ + E + +R Sbjct: 121 AEARGSEAGMYDAFQLGLGEPCPISAEHGQGMPDLRDAIVELLGE-------ERVFAEER 173 Query: 181 NEESPKENITSEGKSSV---------------KNISKPLRIAVVGRPNVGKSTLINRLLG 225 EE+ E T ++ + +KPLRIA+VGRPN GKSTLIN +LG Sbjct: 174 QEEAADEVFTPAAVGALVGDDIEDPDAEEIPAYDATKPLRIAIVGRPNAGKSTLINTMLG 233 Query: 226 YNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRT 285 +RLLTG ++GITRDS+S W W I++FDTAGMR+ +R+ E LE+ +V ++++R Sbjct: 234 EDRLLTGPEAGITRDSISADWEWHGRKIKLFDTAGMRRKARVQEKLEKLSVADGLRAIRF 293 Query: 286 CETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNL 345 E I++LDATIPFEKQDL+I D + G A V+A NKWD++ D+ +L DL K + L Sbjct: 294 AEVVIIVLDATIPFEKQDLQIADLIIREGRAPVIAFNKWDLIEDRQMVLADLYEKTARLL 353 Query: 346 PQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFN 405 PQ+ + ISG G+G+D LM +V++ +++W RI+T LN WL+ PPP + Sbjct: 354 PQVRGLRAVPISGERGQGIDKLMENVVKTHEIWNRRISTGRLNRWLEGVIAHQPPPAVSG 413 Query: 406 RYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 R ++KY+TQ+++ PP F++ C+ P+ +P+SY RYLIN LR F + G+PIR+ ++S N Sbjct: 414 RRLKVKYMTQVKTRPPGFVVSCSRPDAMPQSYVRYLINGLRETFDMPGVPIRLSLRTSDN 473 Query: 466 PYIKK 470 P+ + Sbjct: 474 PFAGR 478 >gi|254701190|ref|ZP_05163018.1| GTP-binding protein EngA [Brucella suis bv. 5 str. 513] gi|261751727|ref|ZP_05995436.1| GTP-binding protein engA [Brucella suis bv. 5 str. 513] gi|261741480|gb|EEY29406.1| GTP-binding protein engA [Brucella suis bv. 5 str. 513] Length = 483 Score = 435 bits (1119), Expect = e-120, Method: Compositional matrix adjust. Identities = 206/485 (42%), Positives = 305/485 (62%), Gaps = 22/485 (4%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +T+AIVG PNVGKSTLFNRLV +K+A+V + PG+TRDR A + + F ++DTAG+ Sbjct: 1 MGFTLAIVGRPNVGKSTLFNRLVGRKLALVDDLPGVTRDRRIHDAKLYDLKFQVIDTAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + N S+ +M QTE AI+EA +LF+ID+KAGITP D +R+ P+++V+NK Sbjct: 61 EEAANDSLEARMRAQTEAAISEADAVLFVIDAKAGITPADSTFAEAVRRSGKPVVLVANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + R ++ Y+ + L E ISAEH G +L I + + E + +R Sbjct: 121 AEARGSEAGMYDAFQLGLGEPCPISAEHGQGMPDLRDAIVEFLGE-------ERVFAEER 173 Query: 181 NEESPKENITSEGKSSV---------------KNISKPLRIAVVGRPNVGKSTLINRLLG 225 EE+ E T ++ + +KPLRIA+VGRPN GKSTLIN +LG Sbjct: 174 QEEAADEVFTPAAVGALVGDDIEDPDAEEIPAYDATKPLRIAIVGRPNAGKSTLINTMLG 233 Query: 226 YNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRT 285 +RLLTG ++GITRDS+S W W I++FDTAGMR+ +R+ E LE+ +V ++++R Sbjct: 234 EDRLLTGPEAGITRDSISADWEWHGRKIKLFDTAGMRRKARVQEKLEKLSVADGLRAIRF 293 Query: 286 CETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNL 345 E I++LDATIPFEKQDL+I D + G A V+A NKWD++ D+ +L DL K + L Sbjct: 294 AEVVIIVLDATIPFEKQDLQIADLIIREGRAPVIAFNKWDLIEDRQMVLADLYEKTARLL 353 Query: 346 PQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFN 405 PQ+ + ISG G+G+D LM +V++ +++W RI+T LN WL+ PPP + Sbjct: 354 PQVRGLRAVPISGERGQGIDKLMENVVKTHEIWNRRISTGRLNRWLEGVIAHQPPPAVSG 413 Query: 406 RYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 R ++KY+TQ+++ PP F++ C+ P+ +P+SY RYLIN LR F + G+PIR+ ++S N Sbjct: 414 RRLKVKYMTQVKTRPPGFVVSCSRPDAMPQSYVRYLINGLRETFDMPGVPIRLSLRTSDN 473 Query: 466 PYIKK 470 P+ + Sbjct: 474 PFAGR 478 >gi|153007833|ref|YP_001369048.1| GTP-binding protein EngA [Ochrobactrum anthropi ATCC 49188] gi|166225832|sp|A6WW65|DER_OCHA4 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|151559721|gb|ABS13219.1| small GTP-binding protein [Ochrobactrum anthropi ATCC 49188] Length = 483 Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust. Identities = 203/482 (42%), Positives = 306/482 (63%), Gaps = 22/482 (4%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +T+AIVG PNVGKSTLFNRLV +K+A+V + PG+TRDR A + + F ++DTAG+ Sbjct: 1 MGFTVAIVGRPNVGKSTLFNRLVGRKLALVDDLPGVTRDRRIHDAKLYDLKFQVIDTAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + N S+ +M QTE AI EA +ILF++D+K G+TP D +R+ P+++V+NK Sbjct: 61 EEAANDSLEARMRAQTEAAIQEADVILFVVDAKNGLTPTDSTFAEVVRRSGKPVVLVANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + R AQ Y+ + L E ISAEH G +L I ++ + E + +++ Sbjct: 121 AEARGAQSGMYDAFQLGLGEPCPISAEHGQGMPDLRDAIVELLGE-------ERVFADEK 173 Query: 181 NEESPKENITSEGKSSV---------------KNISKPLRIAVVGRPNVGKSTLINRLLG 225 EE+ E T + + + +KPLRIA+VGRPN GKSTLIN +LG Sbjct: 174 EEETADEVFTPKAVGELIGDDIEDPDEEEIPAYDATKPLRIAIVGRPNAGKSTLINTMLG 233 Query: 226 YNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRT 285 +RLLTG ++GITRDS+S+ W W+ I++FDTAG+R+ SR+ E LE+ +V ++++R Sbjct: 234 EDRLLTGPEAGITRDSISVDWEWRGRKIKLFDTAGLRRKSRVQEKLEKLSVADGLRAIRF 293 Query: 286 CETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNL 345 E I++LDATIPFEKQDL+I D + G A ++A NKWD++ D+ +L DL K + L Sbjct: 294 AEVVIIVLDATIPFEKQDLQIADLIIREGRAPIIAFNKWDLIEDRQMVLADLYEKTARLL 353 Query: 346 PQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFN 405 PQ+ + ISG G+G+D LM +V++ +++W R++T LN WL PPP + Sbjct: 354 PQVRGLRAVPISGERGQGIDKLMENVVKTHEIWNRRVSTGRLNRWLAGVIAHQPPPAVSG 413 Query: 406 RYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 R ++KY+TQ+++ PP F++ C+ P+ +P+SY RYLIN LR F + G+PIR+ ++S N Sbjct: 414 RRLKVKYMTQVKTRPPGFVVSCSRPDAMPQSYVRYLINGLRETFDMPGVPIRLSLRTSDN 473 Query: 466 PY 467 P+ Sbjct: 474 PF 475 >gi|148559467|ref|YP_001258406.1| GTP-binding protein EngA [Brucella ovis ATCC 25840] gi|166224311|sp|A5VNV9|DER_BRUO2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|148370724|gb|ABQ60703.1| GTP-binding protein [Brucella ovis ATCC 25840] Length = 483 Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust. Identities = 205/485 (42%), Positives = 305/485 (62%), Gaps = 22/485 (4%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +T+AIVG PNVGKSTLFNRLV +K+A+V + PG+TRDR A + + F ++DTAG+ Sbjct: 1 MGFTLAIVGRPNVGKSTLFNRLVGRKLALVDDLPGVTRDRRIHDAKLYDLKFQVIDTAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + N S+ +M QTE AI+EA +LF+ID+KAGITP D +R+ P+++V+NK Sbjct: 61 EEAANDSLEARMRAQTEAAISEADAVLFVIDAKAGITPADSTFAEAVRRSGKPVVLVANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + R ++ Y+ + L E ISA+H G +L I ++ + E + +R Sbjct: 121 AEARGSEAGMYDAFQLGLGEPCPISAKHGQGMPDLRDAIVELLGE-------ERVFAEER 173 Query: 181 NEESPKENITSEGKSSV---------------KNISKPLRIAVVGRPNVGKSTLINRLLG 225 EE+ E T ++ + +KPLRIA+VGRPN GKSTLIN +LG Sbjct: 174 QEEAADEVFTPAAVGALVGDDIEDPDAEEIPAYDATKPLRIAIVGRPNAGKSTLINTMLG 233 Query: 226 YNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRT 285 +RLLTG ++GITRDS+S W W I++FDTAGMR+ +R+ E LE+ +V ++++R Sbjct: 234 EDRLLTGPEAGITRDSISADWEWHGRKIKLFDTAGMRRKARVQEKLEKLSVADGLRAIRF 293 Query: 286 CETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNL 345 E I++LDATIPFEKQDL+I D + G A V+A NKWD++ D+ +L DL K + L Sbjct: 294 AEVVIIVLDATIPFEKQDLQIADLIIREGRAPVIAFNKWDLIEDRQMVLADLYEKTARLL 353 Query: 346 PQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFN 405 PQ+ + ISG G+G+D LM +V++ +++W RI+T LN WL+ PPP + Sbjct: 354 PQVRGLRAVPISGERGQGIDKLMENVVKTHEIWNRRISTGRLNRWLEGVIAHQPPPAVSG 413 Query: 406 RYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 R ++KY+TQ+++ PP F++ C+ PN +P+SY RY IN LR F + G+PIR+ ++S N Sbjct: 414 RRLKVKYMTQVKTRPPGFVVSCSRPNAMPQSYVRYFINGLRETFDMPGVPIRLSLRTSDN 473 Query: 466 PYIKK 470 P+ + Sbjct: 474 PFAGR 478 >gi|254693167|ref|ZP_05154995.1| GTP-binding protein EngA [Brucella abortus bv. 3 str. Tulya] gi|261213405|ref|ZP_05927686.1| GTP-binding protein engA [Brucella abortus bv. 3 str. Tulya] gi|260915012|gb|EEX81873.1| GTP-binding protein engA [Brucella abortus bv. 3 str. Tulya] Length = 483 Score = 432 bits (1112), Expect = e-119, Method: Compositional matrix adjust. Identities = 206/485 (42%), Positives = 305/485 (62%), Gaps = 22/485 (4%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +T+AIVG PNVGKSTLFNRLV +K+A+V + PG+TRDR A + + F ++DTAG+ Sbjct: 1 MGFTLAIVGRPNVGKSTLFNRLVGRKLALVDDLPGVTRDRRIHDAKLYDLKFQVIDTAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + N S+ +M QTE AI+EA +LF+ID+KAGITP D +R+ P+++V+NK Sbjct: 61 EEAANDSLEARMRAQTEAAISEADAVLFVIDAKAGITPADSTFAEAVRRSGKPVVLVANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + R ++ Y+ + L E ISAEH G +L I ++ + E + +R Sbjct: 121 AEARGSEAGMYDAFQLGLGEPCPISAEHGQGMPDLRDAIVELLGE-------ERVFAEER 173 Query: 181 NEESPKENITSEGKSSV---------------KNISKPLRIAVVGRPNVGKSTLINRLLG 225 EE+ E T ++ + +KPLRIA+VGRPN GKSTLIN +LG Sbjct: 174 QEEAADEVFTPAAVGALVGDDIEDPDAEEIPAYDATKPLRIAIVGRPNAGKSTLINTMLG 233 Query: 226 YNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRT 285 +RLLTG ++GITRDS+S W W I +FDTAGMR+ +R+ E LE+ +V S++++R Sbjct: 234 EDRLLTGPEAGITRDSISADWEWHGRKINLFDTAGMRRKARVQEKLEKLSVADSLRAIRF 293 Query: 286 CETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNL 345 E I++LDATIPFEKQDL+I D + G A V+A NKWD++ D+ +L DL K + L Sbjct: 294 AEVVIIVLDATIPFEKQDLQIADLIIREGRAPVIAFNKWDLIEDRQMVLADLYEKTARLL 353 Query: 346 PQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFN 405 PQ+ + ISG G+G+D LM +V++ +++W RI+T LN WL+ PP + Sbjct: 354 PQVRGLRAVPISGERGQGIDKLMENVVKTHEIWNRRISTGRLNRWLEGVIAHQLPPAVSG 413 Query: 406 RYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 R ++KY+TQ+++ PP F++ C+ P+ +P+SY RYLIN LR F + G+PIR+ ++S N Sbjct: 414 RRLKVKYMTQVKTRPPGFVVSCSRPDAMPQSYVRYLINGLRETFDMPGVPIRLSLRTSDN 473 Query: 466 PYIKK 470 P+ + Sbjct: 474 PFAGR 478 >gi|307946716|ref|ZP_07662051.1| ribosome-associated GTPase EngA [Roseibium sp. TrichSKD4] gi|307770380|gb|EFO29606.1| ribosome-associated GTPase EngA [Roseibium sp. TrichSKD4] Length = 478 Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust. Identities = 207/473 (43%), Positives = 302/473 (63%), Gaps = 6/473 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M T+AI+G PNVGKSTLFNRLV K++A+V + PG+TRDR G+A + + F IVDTAG+ Sbjct: 1 MGATVAIIGRPNVGKSTLFNRLVGKRLALVDDTPGVTRDRRPGEARLGDLRFTIVDTAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 D S+ +M QTE AI EA+ ILF+ID++AG+TP D + RK P+I+++NK Sbjct: 61 EDADASSLEGRMRKQTEDAIEEANAILFVIDARAGVTPLDAHFAAIARKTTTPVILLANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + R + YE YSL E + +SAEH G ++L+ + K + N E + + R Sbjct: 121 AEGRAGESGLYESYSLGLGEPIAVSAEHGEGLADLYDAL-KPYVDAI-NEEEEALRDEAR 178 Query: 181 NEESPK----ENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSG 236 K + E V +PLR+A+VGRPN GKSTLINR+LG +R+LTG ++G Sbjct: 179 TSIELKFDEDGELIEEEDDPVGTKDRPLRVAIVGRPNAGKSTLINRMLGEDRMLTGPEAG 238 Query: 237 ITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDAT 296 ITRDS+S+ W W+ +++FDTAG+R+ +R+ E LE+ +V ++++++ E +V LDAT Sbjct: 239 ITRDSISVDWEWRERHVKLFDTAGIRRKARVQEKLEKLSVADALRAIKFAEVVVVTLDAT 298 Query: 297 IPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTI 356 FEKQDL+I+D V G A+V+A+NKWD+V D+ + +R + QI + I T+ Sbjct: 299 NSFEKQDLQIIDLVAREGRALVIAINKWDLVEDREAAWKKIRDANERCFNQIRGVQIATL 358 Query: 357 SGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQI 416 SG G+G+D L+ SV + W RI+TS LN WL+K +PPP + R RL+Y+TQ Sbjct: 359 SGMQGQGIDRLLESVFTAYEHWNARISTSRLNRWLEKVTNNHPPPAVAGRRVRLRYLTQP 418 Query: 417 QSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIK 469 ++ PP F+ FC+ P ++PESY RYL+N LR F + G PIR ++ +NPY K Sbjct: 419 KTRPPHFVAFCSRPEQLPESYTRYLVNNLREAFDIPGSPIRFSYRKGENPYAK 471 >gi|163761004|ref|ZP_02168082.1| GTP-binding protein EngA [Hoeflea phototrophica DFL-43] gi|162281785|gb|EDQ32078.1| GTP-binding protein EngA [Hoeflea phototrophica DFL-43] Length = 499 Score = 429 bits (1103), Expect = e-118, Method: Compositional matrix adjust. Identities = 202/472 (42%), Positives = 310/472 (65%), Gaps = 4/472 (0%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M T+AIVG PNVGKSTLFNRL +K+A+V + PG+TRDR G A + + F ++DTAG+ Sbjct: 1 MSLTLAIVGRPNVGKSTLFNRLAGRKLALVDDTPGVTRDRRPGDARLVDLRFTMIDTAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 ++ +M QTE AI+EA +FLID+KAG+TP D + LRK+ P+++V+NK Sbjct: 61 EVSGPDTLEGRMRAQTEAAIDEADGAMFLIDAKAGLTPADELLADILRKRGKPVVLVANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQK--YPNHPLEMIENN 178 + + ++ + + L E +SAEH G +L I + F ++ +P+ + Sbjct: 121 AEAKGSESGMLDAWRLGLGEPCPVSAEHGGGMLDLRDAIVEAFGEERCFPSKD-SAFADA 179 Query: 179 KRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 N + P ++ + + + +KPLR+A+VGRPN GKSTLIN+ LG +RLLTG ++GIT Sbjct: 180 VTNIDIPT-SVDEDDEGPEYDETKPLRVAIVGRPNAGKSTLINQFLGQDRLLTGPEAGIT 238 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RDS+++ + WK I++FDTAG+R+ +R+ E LE+ +V +++++R E +++ D+TIP Sbjct: 239 RDSIAVDFEWKGRKIKLFDTAGLRRKARVQEKLEKLSVADALRAIRFAEVVVIVFDSTIP 298 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 FEKQDL+I D V G A V+A NKWD++ ++ L +LR + LPQI I T++G Sbjct: 299 FEKQDLQIADLVVREGRAPVIAFNKWDLIDNRQEKLAELREMTDRLLPQIRGIRAVTVAG 358 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 +TGEGL+ LM ++ ++++W RI+T+ LN WL TQ +PPP + R +LKY+TQI++ Sbjct: 359 QTGEGLERLMENIALVHRVWNKRISTAKLNRWLDHTQGHHPPPAVSGRRLKLKYMTQIKA 418 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 PP F+I CT P +PESY RYLIN LR +F + G+P+R+ ++S NP+ K Sbjct: 419 RPPGFMISCTRPEAVPESYTRYLINSLRADFEMPGVPLRVVYRSGDNPFAPK 470 >gi|328544034|ref|YP_004304143.1| GTP-binding protein engA [polymorphum gilvum SL003B-26A1] gi|326413778|gb|ADZ70841.1| GTP-binding protein engA [Polymorphum gilvum SL003B-26A1] Length = 472 Score = 429 bits (1102), Expect = e-118, Method: Compositional matrix adjust. Identities = 198/470 (42%), Positives = 303/470 (64%), Gaps = 2/470 (0%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M T+AI+G PNVGKSTLFNRLV K++A+V + PG+TRDR G+A + + F ++DTAG+ Sbjct: 1 MGATVAIIGRPNVGKSTLFNRLVGKRLALVDDTPGVTRDRRPGEARLGDLRFTVIDTAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 D S+ +M QTE AI EA ++LF+ID+++G+TP D R+ + P+I+++NK Sbjct: 61 EDADATSLEGRMRAQTEEAIAEADVVLFVIDARSGVTPLDSHFAEVARRSDRPVILLANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + R + Y+ ++L + V ISAEH G ++L+ + ++ Sbjct: 121 AEGRAGEGGLYDAFALGLGDPVAISAEHGEGLADLYEALLPYVERVEEEEAARDEARIGI 180 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 + + E I E + + +PLR+A+VGRPN GKSTLINR++G R+LTG ++GITRD Sbjct: 181 DLDESGEAIEPETPAGTRE--RPLRVAIVGRPNAGKSTLINRMIGEERMLTGPEAGITRD 238 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+S+ W W++H +++FDTAG+R+ +R+ E LE+ +V ++++++ E +V LDAT FE Sbjct: 239 SISVDWLWRDHHVKLFDTAGIRRKARVQEKLEKLSVADALRAIKFAEVVVVTLDATNAFE 298 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 KQDL+I+D V G A+V+A+NKWD+V D+ Q +R + L QI + I TISG Sbjct: 299 KQDLQIIDLVAREGRALVIAINKWDLVEDREAAWQAIRDAQDRYLNQIRGVQIATISGIQ 358 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G+G+D LM +V +W TRI+T+ LN WL +PPP + R RL+Y+TQ ++ P Sbjct: 359 GQGIDRLMEAVFTAYDVWNTRISTARLNRWLDGVLAHHPPPAVQGRRVRLRYMTQAKTRP 418 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 P F++FC+ P ++PESY RYL+N LR F + G PIR+ ++ +NPY K Sbjct: 419 PHFVVFCSRPEELPESYTRYLVNTLRDKFDMPGTPIRLSYRKGENPYAGK 468 >gi|260460374|ref|ZP_05808626.1| small GTP-binding protein [Mesorhizobium opportunistum WSM2075] gi|259034019|gb|EEW35278.1| small GTP-binding protein [Mesorhizobium opportunistum WSM2075] Length = 476 Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust. Identities = 203/471 (43%), Positives = 299/471 (63%), Gaps = 1/471 (0%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M + +AI+G PNVGKSTLFNRLV +K+A+V + PG+TRDR A + + F+++DTAG Sbjct: 1 MTFKVAIIGRPNVGKSTLFNRLVGRKLALVDDTPGVTRDRRVHAAKLYDLHFDVIDTAGF 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 D ++ +M QTE+AI+EA LI F ID+K+G+ P D +RK P+++V+NK Sbjct: 61 EDAAASTLPGRMRAQTEIAIHEADLIFFTIDAKSGLLPDDRTFAEIVRKSGKPVVLVANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELH-SVIFKIFKQKYPNHPLEMIENNK 179 + + AQ E + L E + +SAEH G +L +VI + + + E + Sbjct: 121 AEAKGAQGGMLEAWELGLGEPIPVSAEHGQGMPDLRDAVIAALGEARAFGEDEEDDQEIA 180 Query: 180 RNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITR 239 E E+I + +KP+RIAVVGRPN GKSTLIN L+G RLLTG ++GITR Sbjct: 181 TGEVLIGEDIADPDAEPAYDDTKPMRIAVVGRPNAGKSTLINALIGEERLLTGPEAGITR 240 Query: 240 DSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPF 299 DS+S+ W+W+ I++FDTAGMR+ +RI E LE +V+ ++++R E I++LDATIPF Sbjct: 241 DSISVDWDWRGRRIKLFDTAGMRRKARIHEKLEVMSVQDGLRAIRFAEIVIIVLDATIPF 300 Query: 300 EKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGR 359 EKQDL+I D + G A V+A NKWD++ LL +LR K + LPQ I +S Sbjct: 301 EKQDLQIADLIIREGRAPVIAFNKWDLIDHPQELLAELREKTERLLPQARGIQAVPVSAE 360 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 TG GLD LM +VL+ +K+W +R++T LN WL+ +PPP + R ++KY+TQ ++ Sbjct: 361 TGRGLDKLMDAVLKTHKVWNSRVSTGKLNRWLEAILAHHPPPAVAGRRLKVKYVTQAKTR 420 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 PP F++ C+ P+ +P+SY RYL N LR F + G+PIR+ ++S NP+ + Sbjct: 421 PPGFVVQCSRPDAMPQSYVRYLSNSLREAFDMPGVPIRIALRTSDNPFAGR 471 >gi|110633049|ref|YP_673257.1| GTP-binding protein EngA [Mesorhizobium sp. BNC1] gi|123162694|sp|Q11KI3|DER_MESSB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|110284033|gb|ABG62092.1| small GTP-binding protein [Chelativorans sp. BNC1] Length = 470 Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust. Identities = 200/470 (42%), Positives = 304/470 (64%), Gaps = 5/470 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M + +AIVG PNVGKSTLFNRLV +++A+V + PG+TRDR A + + F+++DTAG+ Sbjct: 1 MPFKVAIVGRPNVGKSTLFNRLVGRRIALVDDTPGVTRDRRVHSARLLDLRFDVIDTAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + ++A +M QTE AI+EA L+LF+ID++AG+ P D A +R+K P+++V+NK Sbjct: 61 EEAAAPTLAGRMRAQTETAIDEADLVLFMIDARAGLMPDDRAFAEVVRRKGKPVVLVANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 D R E ++L + V +SAEH G EL I ++ E + Sbjct: 121 TDVRGTDAGVLEAFALGLGDPVAVSAEHGQGMVELRDAI-----AEFAGQAEEEERVTEE 175 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 E+I + + + + +KP+RIAVVGRPNVGKSTLIN L+G RLLTG ++GITRD Sbjct: 176 ETVLIGEDIDPDSEEARYDPTKPIRIAVVGRPNVGKSTLINALIGEERLLTGPEAGITRD 235 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+S+ W+W+ I++FDTAGMR+ +R+ E LE+ +V +S++++R E I++ DAT+PFE Sbjct: 236 SISVDWHWRGREIKLFDTAGMRRKARVQEKLEKLSVGESLRAIRFAEVVIIVFDATMPFE 295 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 KQDL+I D + G A V+A NKWD++ ++ L +LR K + LPQ + IS T Sbjct: 296 KQDLQIADLIVREGRAPVIAFNKWDLIENRQEKLAELREKTDRLLPQARGLRSVPISAET 355 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G GLD L+ + + + +W R+ T LN WL+ Q+PPP + R ++KY+TQ+++ P Sbjct: 356 GRGLDQLLEAAVSTHVVWNRRVPTGPLNRWLEAASTQHPPPAVSGRRLKVKYMTQVKTRP 415 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 P F++ C+ P +P+SY RYL+N LR +F + G+PIR+ ++S+NPY K Sbjct: 416 PGFVLSCSRPEAMPQSYIRYLVNGLRESFDIFGVPIRISLRASENPYAGK 465 >gi|49475207|ref|YP_033248.1| GTP-binding protein EngA [Bartonella henselae str. Houston-1] gi|81696225|sp|Q6G5J7|DER_BARHE RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|49238012|emb|CAF27217.1| GTP-binding protein [Bartonella henselae str. Houston-1] Length = 475 Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust. Identities = 210/473 (44%), Positives = 306/473 (64%), Gaps = 11/473 (2%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M TIAIVG PNVGKSTLFNRLV +K+A+V + PG+TRDR A + + F+++DTAG+ Sbjct: 1 MSLTIAIVGRPNVGKSTLFNRLVGQKLALVDDKPGVTRDRRVHAATLQDLRFDVIDTAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + + ++ +M T+ AI+EA LILF+ D+K+GITP D S +RK PI++V+NK Sbjct: 61 EETGDHTLEGRMRAHTKAAIDEADLILFVFDAKSGITPSDLNFASLVRKSGKPIVLVANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK------IFKQKYPNHPLEM 174 +++ A YE +SL E ISAEH LG S+L I K IF K E Sbjct: 121 SESKAAIGGEYEAWSLGLGEPCSISAEHGLGLSDLRDAIMKASGGERIFASKNQE---EH 177 Query: 175 IENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQ 234 I + + +N+ E K V + SKPLRIAV GRPN GKSTLINR+LG +RLLTG + Sbjct: 178 IALQSASLDDYIDNL--EEKGDVYDKSKPLRIAVAGRPNTGKSTLINRMLGQDRLLTGPE 235 Query: 235 SGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLD 294 +G+TRDS+S+ W W+ I++FDTAG+R+ S+I E LE+ +V +++++R E +++ D Sbjct: 236 AGLTRDSISVDWEWRGRHIKLFDTAGLRRKSKIQEKLEKLSVADTLRAIRFAEVVVIVFD 295 Query: 295 ATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYIN 354 AT PFEKQDL+I D V G ++A NKWD++ + L DL K I+ LPQ+ + Sbjct: 296 ATTPFEKQDLQIADLVIREGRVPLIAFNKWDLIENSQATLVDLHEKCIRLLPQVRGLRAV 355 Query: 355 TISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYIT 414 +SG+ G+G+D LM +V+ ++++W RI+T LN WL+ +PPP + R ++KY+T Sbjct: 356 PLSGQYGQGIDKLMENVMMMHRVWNRRISTGKLNRWLETIVAHHPPPAVLGRRLKVKYVT 415 Query: 415 QIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 Q+++ PP F+ C+ P +P+SY RYL N LR F + GIPIR+ ++S NP+ Sbjct: 416 QVKTRPPGFVFSCSRPKLMPQSYLRYLSNELRNTFDMPGIPIRISLRASDNPF 468 >gi|254473321|ref|ZP_05086718.1| GTP-binding protein EngA [Pseudovibrio sp. JE062] gi|211957437|gb|EEA92640.1| GTP-binding protein EngA [Pseudovibrio sp. JE062] Length = 468 Score = 426 bits (1095), Expect = e-117, Method: Compositional matrix adjust. Identities = 198/470 (42%), Positives = 303/470 (64%), Gaps = 4/470 (0%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M T+AI+G PNVGKSTLFNRLV K++A+V + PG+TRDR G A + + F IVDTAG+ Sbjct: 1 MTATVAIIGRPNVGKSTLFNRLVGKRLALVDDTPGVTRDRRSGDARLGDLRFRIVDTAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + + S+ +M QTE AI EA LFLID++AG+ P D + LR+ + P+I+ +NK Sbjct: 61 EEAEASSLEGRMRAQTEEAIREADACLFLIDARAGLMPLDEHFANLLRRNSTPVILCANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + + Y+ ++L F + + +SAEH G SEL+ ++ I + + + Sbjct: 121 AEGKAGDVGLYDAFTLGFGDPIALSAEHGEGLSELYDMLRPIVDEADELEASQEFTEART 180 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 + + E I V +PLR+A+VGRPN GKSTLIN++LG RLLTG ++GITRD Sbjct: 181 DVDVEDEEI----DEPVGTRERPLRMAIVGRPNAGKSTLINQMLGEERLLTGPEAGITRD 236 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+S+ W W++H +++FDTAG+RK +R+ E LE+ +V ++++V+ E +V LDATI FE Sbjct: 237 SISVEWEWQDHHVKVFDTAGIRKKARVQEKLEKLSVADALRAVKFAEVVVVTLDATISFE 296 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 KQDL+I+D G A+V+A+NKWD++ D+ + ++ + L Q+ + I T+SG Sbjct: 297 KQDLQIIDLCAREGRAIVIAVNKWDLIEDREDAWGHIKDSQERYLNQLRGVEIVTMSGIN 356 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G+GLD LM +V ++W RI TS LN WL+ + +PPP + R RL+++TQ ++ P Sbjct: 357 GQGLDKLMQAVFRAYEMWNKRIGTSSLNRWLEGVLIHHPPPAVSGRRVRLRFMTQPKTRP 416 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 P F++F + P+ +PESY RYL+N +R F + G P+R+ ++ +NPY KK Sbjct: 417 PHFVVFSSKPDNLPESYTRYLVNGIRERFDIKGTPVRLSYRKGENPYHKK 466 >gi|163867849|ref|YP_001609053.1| GTP-binding protein EngA [Bartonella tribocorum CIP 105476] gi|189037137|sp|A9IQH4|DER_BART1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|161017500|emb|CAK01058.1| GTP-binding protein [Bartonella tribocorum CIP 105476] Length = 474 Score = 426 bits (1095), Expect = e-117, Method: Compositional matrix adjust. Identities = 204/469 (43%), Positives = 309/469 (65%), Gaps = 4/469 (0%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M TIAIVG PNVGKSTLFNRLV +K+A+V + PG+TRDR A + + F+++DTAG+ Sbjct: 1 MSLTIAIVGRPNVGKSTLFNRLVGQKLALVDDKPGVTRDRRIHAAKLQDLRFDVIDTAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + + ++ +M QT+ AI+EA LILF+ D+K+GITP D S +RK PI++V+NK Sbjct: 61 EEAGDHTLEGRMRSQTKAAIDEADLILFVFDAKSGITPSDLNFASLVRKSGKPIVLVANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF--KQKYPNHPLEMIENN 178 +++ A YE +SL E ISAEH LG S+L I ++ + N+ E + Sbjct: 121 SESKAATGGEYEAWSLGLGEPCPISAEHGLGLSDLRDAIIDAVGSERAFSNNKEEDMTIQ 180 Query: 179 KRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 + E++ EG + + SKP+RIA+ GRPN GKSTLIN +L +RLLTG ++G+T Sbjct: 181 PASVGDDIEDLQEEG--LIYDESKPIRIAIAGRPNTGKSTLINSMLKQDRLLTGPEAGLT 238 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RDS+S+ W W+ I++FDTAG+R+ S+I E LE+ +V +++++R E +++ DAT+P Sbjct: 239 RDSISVDWEWRGRHIKLFDTAGLRRKSKIQEKLEKLSVADTLRAIRFAEVVVIVFDATMP 298 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 FEKQDL+I D V G V+A NKWD++ + L DL K + LPQ+ + +SG Sbjct: 299 FEKQDLQIADLVIREGRVPVIAFNKWDLIENSQATLIDLHEKCARFLPQVRGLRAVPLSG 358 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 + G+G+D LM +++ ++++W RI+T+ LN WL+ +PPP I R ++KYITQ+++ Sbjct: 359 QYGQGIDKLMENIMMMHRVWNRRISTAKLNQWLEIVVAHHPPPAISGRRLKVKYITQVKT 418 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 PP F+I C+ P +P+SY RYL+N LR F +SGIP+R+ ++S NP+ Sbjct: 419 RPPGFMISCSRPKVMPQSYLRYLVNGLRETFDMSGIPVRLSLRASDNPF 467 >gi|84684686|ref|ZP_01012586.1| GTP-binding protein EngA [Maritimibacter alkaliphilus HTCC2654] gi|84667021|gb|EAQ13491.1| GTP-binding protein EngA [Rhodobacterales bacterium HTCC2654] Length = 481 Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust. Identities = 205/473 (43%), Positives = 298/473 (63%), Gaps = 14/473 (2%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +T+AIVG PNVGKSTLFNRLV K++A+V N PG+TRD G+A + + F ++DTAG+ Sbjct: 1 MTFTLAIVGRPNVGKSTLFNRLVGKRLALVDNQPGVTRDLREGEARLGEMRFTVIDTAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 D + S+ +M TE A+ A LFLID++AG+ P D LRKKN +I+ +NK Sbjct: 61 EDATDDSLEGRMRRLTERAVEMADACLFLIDARAGVLPTDEIFADILRKKNAHVILAANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + + + E + L E + +SAEH G +L + + + + E R Sbjct: 121 AEGKAGEAGMIEAWGLGLGEPIALSAEHGEGMGDLAAALAPVAE-----------EMASR 169 Query: 181 NEESPKENI-TSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITR 239 P+ ++ +G + KPL++AV+GRPN GKSTLINRL+G RLLTG ++GITR Sbjct: 170 PSPEPETDVDVDQGAPRIPTREKPLQVAVIGRPNAGKSTLINRLIGEERLLTGPEAGITR 229 Query: 240 DSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPF 299 DS+S++++W P IFDTAGMRK +++ E LE+ +V +++V+ E +VLLDA IPF Sbjct: 230 DSISLAFDWDGTPTRIFDTAGMRKKAKVQEKLEKLSVADGLRAVKFAEVVVVLLDAAIPF 289 Query: 300 EKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGR 359 E+QDLRI D G AVV+A+NKWD+ ++K L+ LR K LPQ+ + TIS + Sbjct: 290 EQQDLRIADLAEREGRAVVVAVNKWDVEAEKQQKLKHLRDGFEKLLPQLRGAPLVTISAK 349 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 TG G+D L +V+ +++W RI T+ LN WL + Q+PPP R +L+Y+TQ+++ Sbjct: 350 TGRGMDRLHAAVMRAHEVWNRRIPTAKLNDWLAEMIAQHPPPAPSGRRIKLRYMTQVKTR 409 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIR--MCFQSSKNPYIKK 470 PP F++ C+ P K+P++Y RYL+N LR NF + G PIR M Q+ KNPY K Sbjct: 410 PPGFVVMCSNPEKLPDAYSRYLVNGLRENFDMPGTPIRLHMRSQADKNPYKNK 462 >gi|239831251|ref|ZP_04679580.1| small GTP-binding protein [Ochrobactrum intermedium LMG 3301] gi|239823518|gb|EEQ95086.1| small GTP-binding protein [Ochrobactrum intermedium LMG 3301] Length = 489 Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust. Identities = 201/475 (42%), Positives = 302/475 (63%), Gaps = 8/475 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +T+AIVG PNVGKSTLFNRLV +K+A+V + PG+TRDR A + + F ++DTAG+ Sbjct: 7 MGFTVAIVGRPNVGKSTLFNRLVGRKLALVDDLPGVTRDRRIHDAKLYDLKFQVIDTAGL 66 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + N S+ +M QTE AI EA +ILF++D+K G+TP D +R+ P+++V+NK Sbjct: 67 EEAANDSLEARMRAQTEAAIQEADVILFVVDAKNGLTPTDSTFAEVVRRSGKPVVLVANK 126 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF------KIFKQKYPNHPLEM 174 + R AQ Y+ + L E ISAEH G +L I ++F + + Sbjct: 127 AEARGAQSGMYDAFQLGLGEPCPISAEHGQGMPDLRDAIVELLGEERVFADEKEEEAEDE 186 Query: 175 IENNKRNEE--SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTG 232 + K E E + + +KP+RIA+VGRPN GKSTLIN +LG +RLLTG Sbjct: 187 VFTPKVVGELIGDDIEDPDEEEIPAYDATKPMRIAIVGRPNAGKSTLINTMLGEDRLLTG 246 Query: 233 SQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVL 292 ++GITRDS+S+ W W++ I++FDTAG+R+ SR+ E LE+ +V ++++R E I++ Sbjct: 247 PEAGITRDSISVDWEWRDRKIKLFDTAGLRRKSRVQEKLEKLSVADGLRAIRFAEVVIIV 306 Query: 293 LDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIY 352 LDATIPFEKQDL+I D + G A ++A NKWD++ D+ +L DL K + LPQ+ + Sbjct: 307 LDATIPFEKQDLQIADLIIREGRAPIIAFNKWDLIEDRQMVLADLYEKTARLLPQVRGLR 366 Query: 353 INTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKY 412 ISG G+G+D LM +V++ +++W R++T LN WL PPP + R ++KY Sbjct: 367 AVPISGERGQGIDKLMENVVKTHEIWNRRVSTGRLNRWLAGVIAHQPPPAVSGRRLKVKY 426 Query: 413 ITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 +TQ+++ PP F++ C+ P+ +P+SY RYLIN LR F + G+PIR+ ++S NP+ Sbjct: 427 MTQVKTRPPGFVVSCSRPDAMPQSYVRYLINGLRETFDMPGVPIRLSLRTSDNPF 481 >gi|118588128|ref|ZP_01545538.1| GTP-binding protein EngA [Stappia aggregata IAM 12614] gi|118439750|gb|EAV46381.1| GTP-binding protein EngA [Stappia aggregata IAM 12614] Length = 473 Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust. Identities = 202/473 (42%), Positives = 306/473 (64%), Gaps = 7/473 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M T+AI+G PNVGKSTLFNRLV K++A+V + PG+TRDR G A + + F I+DTAG+ Sbjct: 1 MGATVAIIGRPNVGKSTLFNRLVGKRLALVDDTPGVTRDRRPGDARLGDLRFTIIDTAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 D S+ +M QTE AI A +LF+ID++AG+TP D RK P+I+++NK Sbjct: 61 EDADKESLEGRMRRQTEEAIETADAVLFVIDARAGVTPLDAHFAEVARKTTRPVILLANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVI---FKIFKQKYPNHPLEMIEN 177 + R + YE YSL + + ISAEH G ++L+ + ++ E I N Sbjct: 121 AEGRAGESGLYESYSLGLGDPIAISAEHGEGLADLYDALKPHVDRVTEEEEAKREEAITN 180 Query: 178 NKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGI 237 +E+ E + E V + +PLR+A+VGRPN GKSTLINR+LG +R+LTG ++GI Sbjct: 181 VDVDEDG--EFVVEE--DPVGTVERPLRVAIVGRPNAGKSTLINRMLGEDRMLTGPEAGI 236 Query: 238 TRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATI 297 TRDS+S+ W W++ I++FDTAG+RK +R+ E LE+ +V ++++++ E +V LDAT+ Sbjct: 237 TRDSISVDWVWRDRHIKLFDTAGIRKKARVQEKLEKLSVADALRAIKFAEVVVVTLDATM 296 Query: 298 PFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTIS 357 FEKQDL+I+D V G A+V+A+NKWD++ D+ + ++ + QI + I T+S Sbjct: 297 SFEKQDLQIIDLVAREGRALVVAINKWDLIEDREEAWKKIKDANERYFNQIRGVQIATLS 356 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 G+ G+G+D L+ SV + W R++T+ LN WL K +PPP + R RL+Y+TQ + Sbjct: 357 GQQGQGIDRLIESVFTAYEAWNARVSTAKLNRWLDKVTANHPPPAVAGRRVRLRYMTQPK 416 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 + PP F++FC+ P ++PESY RYL+N LR +F++ G PIR+ ++ +NPY K Sbjct: 417 TRPPHFVVFCSRPEQLPESYTRYLVNSLRQSFNIHGTPIRLSYRKGENPYAPK 469 >gi|159043715|ref|YP_001532509.1| GTP-binding protein EngA [Dinoroseobacter shibae DFL 12] gi|189037146|sp|A8LHW1|DER_DINSH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|157911475|gb|ABV92908.1| small GTP-binding protein [Dinoroseobacter shibae DFL 12] Length = 490 Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust. Identities = 203/475 (42%), Positives = 302/475 (63%), Gaps = 15/475 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +T+AIVG PNVGKSTLFNRLV K++A+V + PG+TRD G A + + F ++DTAG+ Sbjct: 1 MPFTLAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDLREGAARLGDLRFTVIDTAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + + S+ +M TE A++ A LFLID++ G+TP D LR+ N +++ +NK Sbjct: 61 EEATDDSLQGRMRRLTERAVSMADACLFLIDARVGVTPTDEVFADILRRSNAHVLLGANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + R A+ E Y+L E + +SAEH G +EL + + E EN + Sbjct: 121 AEGRAAEAGLIEAYALGLGEPLALSAEHGEGMAELTGALMPLIDA------FEETENAE- 173 Query: 181 NEESPKENITSEGKSSVKNI------SKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQ 234 E++P+ ++ + + + + +KPL++AVVGRPN GKSTLIN+LLG +RLLTG + Sbjct: 174 TEDAPETDVALDPDAEEETVVRVPTKAKPLQVAVVGRPNAGKSTLINQLLGEDRLLTGPE 233 Query: 235 SGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLD 294 +GITRD++S++ +W P+ IFDTAGMRK +++ E LE+ +V +++V+ E +VLLD Sbjct: 234 AGITRDAISLAMDWDGLPVRIFDTAGMRKKAKVQEKLEKLSVSDGLRAVKFAEVVVVLLD 293 Query: 295 ATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYIN 354 A IPFE+QDLRI D G AVV+A+NKWDM DK L++L+ + LPQ+ + Sbjct: 294 AGIPFEQQDLRIADLAEREGRAVVIAVNKWDMEDDKQGKLKELKEAFERLLPQLRGAPLV 353 Query: 355 TISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYIT 414 T+S +TG G+D L +VL +++W R+ T+ LN WL +PPP R +L+Y+T Sbjct: 354 TVSAKTGRGMDRLRDAVLRAHEVWNRRVPTAALNRWLGAMVEAHPPPAPGGRRIKLRYMT 413 Query: 415 QIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCF--QSSKNPY 467 Q ++ PP F++ C++P KIPESY RYL+N LR +F + G PIR+ QS NPY Sbjct: 414 QAKTRPPGFVVMCSYPEKIPESYTRYLVNGLREDFDMPGTPIRLTMRSQSDANPY 468 >gi|90418692|ref|ZP_01226603.1| GTP-binding protein [Aurantimonas manganoxydans SI85-9A1] gi|90336772|gb|EAS50477.1| GTP-binding protein [Aurantimonas manganoxydans SI85-9A1] Length = 469 Score = 422 bits (1085), Expect = e-116, Method: Compositional matrix adjust. Identities = 203/473 (42%), Positives = 300/473 (63%), Gaps = 13/473 (2%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKSTLFNRLV K++A+V + PG+TRDR G A + + F +VDTAG+ Sbjct: 1 MVTIAIIGRPNVGKSTLFNRLVGKRLALVDDRPGVTRDRRTGDATLLDLDFEVVDTAGLE 60 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 + ++ +M QTE AI A L LF+ID KAG+ P D A +R+ +I+V+NK Sbjct: 61 EAGADTLEGRMRTQTETAIASADLCLFMIDVKAGVMPQDRAFVEIMRRTAGKVILVANKS 120 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 + R A+ + + L E + ISAEH +G EL I + ++ ++ Sbjct: 121 EARGAEAGMLDAFELGLGEPIGISAEHGVGMGELRDAILEALGEET------FADDTPEP 174 Query: 182 EES----PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGI 237 EE+ P E+ E V + +KPLRIA+VGRPN GKSTLINR LG +R+LTG ++GI Sbjct: 175 EEALVDVPVEDDEVE---PVYDATKPLRIAIVGRPNAGKSTLINRFLGEDRMLTGPEAGI 231 Query: 238 TRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATI 297 TRDS++ W W+ I++FDTAGMR+ +++ E LE+ +V +++++ E +V+ DATI Sbjct: 232 TRDSIASEWEWRGRTIKVFDTAGMRRKAKVQEKLEKLSVADGLRAIKFAEVVVVVFDATI 291 Query: 298 PFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTIS 357 PFE+QD+ IVD V G A V+A NKWD++ D+ +L DLR K + LPQ I T+S Sbjct: 292 PFERQDMSIVDLVMREGRAPVIAFNKWDLIEDRQEVLADLREKTDRLLPQARGIRAITVS 351 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 G TGEG++ LM ++++ +++W RI+T+ LN WL + ++ PP + R +KY+TQ++ Sbjct: 352 GETGEGVERLMKAIVDTHEVWNKRISTAKLNQWLDRMVTRHSPPAVAGRRINIKYMTQVK 411 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 S PP+F+I + P+ + SY RYLIN LR +F L +PIR+ + NPY K Sbjct: 412 SRPPTFMISTSRPDALNASYTRYLINGLRESFGLFAVPIRLGLRKPDNPYAGK 464 >gi|121602708|ref|YP_988693.1| GTP-binding protein EngA [Bartonella bacilliformis KC583] gi|166224307|sp|A1URU0|DER_BARBK RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|120614885|gb|ABM45486.1| GTP-binding protein EngA [Bartonella bacilliformis KC583] Length = 473 Score = 422 bits (1084), Expect = e-116, Method: Compositional matrix adjust. Identities = 204/475 (42%), Positives = 309/475 (65%), Gaps = 14/475 (2%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M TIAIVG PNVGKSTLFNRLV KK+A+V + PG+TRDR A + F+++DTAG+ Sbjct: 1 MSLTIAIVGRPNVGKSTLFNRLVGKKLALVDDKPGVTRDRRIHAARFQDLYFDVIDTAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + + ++ +M QT++AI+EA LILF++D+K+GIT D S +RK PI++V+NK Sbjct: 61 EEADDHTLEGRMRSQTKVAIDEADLILFVLDAKSGITSSDLNFASLVRKSEKPIVLVANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +++ A YE +SL E ISAEH LG S+L I + + +NK+ Sbjct: 121 SESKAATEGKYEAWSLGLGEPCAISAEHGLGLSDLRDAIVDAVGK-------DKAFDNKK 173 Query: 181 NEESPKENITS-------EGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGS 233 E++ ++ + E + + + S P+RIA+ GRPN GKSTLIN +LG +RLLTG Sbjct: 174 EEDTIIQSASVGDNGDDLEEEGCIYDESAPIRIAIAGRPNTGKSTLINSMLGQDRLLTGP 233 Query: 234 QSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLL 293 ++G+TRDS+SI W W++ I++FDTAG+R+ S+I E LE+ +V +++++R E +++ Sbjct: 234 EAGVTRDSISIDWEWRSRHIKLFDTAGLRRKSKIQEKLEKLSVTDTLRAIRFAEVVVIVF 293 Query: 294 DATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYI 353 D+T PFEKQDL+IVD V G ++A NKWD++ + +L DL K LPQ+ + Sbjct: 294 DSTAPFEKQDLQIVDLVIREGRVPIIAFNKWDLIENCQEILADLHEKCACLLPQVRGLRA 353 Query: 354 NTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYI 413 +SG+ G+G+D LM ++ I+++W RI+T LN WL+ ++PPP I R ++KYI Sbjct: 354 VPLSGQYGQGIDKLMENITMIHRIWNRRISTGKLNRWLETVVTRHPPPAISGRRLKVKYI 413 Query: 414 TQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYI 468 TQI++ PP F+I C+ P +P+SY RYL N LR F + G+PIR+ ++S NP++ Sbjct: 414 TQIKTRPPGFMISCSRPEVMPQSYLRYLSNGLRDAFDMPGVPIRLSLRTSDNPFV 468 >gi|319784770|ref|YP_004144246.1| ribosome-associated GTPase EngA [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317170658|gb|ADV14196.1| ribosome-associated GTPase EngA [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 477 Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust. Identities = 199/472 (42%), Positives = 293/472 (62%), Gaps = 2/472 (0%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M + +AI+G PNVGKSTLFNRLV +K+A+V + PG+TRDR A + + F+++DTAG Sbjct: 1 MTFKVAIIGRPNVGKSTLFNRLVGRKLALVDDTPGVTRDRRVHAAKLYDLHFDVIDTAGF 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 D ++ +M QTE+AI EA LI F ID+K+G+ P D +RK P+++V+NK Sbjct: 61 EDAGASTLPGRMRAQTEIAIREADLIFFTIDAKSGLLPDDRTFAEIVRKSGKPVVLVANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQK--YPNHPLEMIENN 178 + + AQ E + L E + +SAEH G +L + + + E Sbjct: 121 AEAKGAQGGMLEAWELGLGEPIPVSAEHGQGMPDLRDAVIGALGEARAFGEDEDGEDEEI 180 Query: 179 KRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 E E+I + +KP+RIAVVGRPN GKSTLIN L+G RLLTG ++GIT Sbjct: 181 AAGEVLIGEDIADPDAEHTYDDTKPMRIAVVGRPNAGKSTLINALIGEERLLTGPEAGIT 240 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RDS+S+ W+W +++FDTAGMR+ +RI E LE +V+ ++++R E I++LDATIP Sbjct: 241 RDSISVDWDWHGRRLKLFDTAGMRRKARIHEKLEVMSVQDGLRAIRFAEIVIIVLDATIP 300 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 FEKQDL+I D + G A V+A NKWD++ LL +LR K + LPQ + +SG Sbjct: 301 FEKQDLQIADLIIREGRAPVIAFNKWDLIDHPQELLAELREKTERLLPQARGLQAVPVSG 360 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 TG GLD LM +V+ +K+W +R++T LN WL+ +PPP + R ++KY+TQ ++ Sbjct: 361 ETGRGLDKLMDAVIRTHKVWNSRVSTGKLNRWLEGILAHHPPPAVAGRRLKVKYVTQAKT 420 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 PP F++ C+ P+ +P+SY RYL N LR F + G+PIR+ ++S NP+ + Sbjct: 421 RPPGFVVQCSRPDAMPQSYVRYLSNSLREAFDMPGVPIRIALRTSDNPFAGR 472 >gi|49473957|ref|YP_031999.1| GTP-binding protein EngA [Bartonella quintana str. Toulouse] gi|81696063|sp|Q6G0H5|DER_BARQU RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|49239460|emb|CAF25811.1| GTP-binding protein [Bartonella quintana str. Toulouse] Length = 477 Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust. Identities = 209/480 (43%), Positives = 308/480 (64%), Gaps = 17/480 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M TIA+VG PNVGKSTLFNRLV +K+A+V + PG+TRDR A + + F+++DTAG+ Sbjct: 1 MSLTIAVVGRPNVGKSTLFNRLVGQKLALVCDKPGVTRDRRIHAAELQDLCFDVIDTAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + + ++ +M T+ AINEA LILF+ D+K+GITP D S +RK PI++V+NK Sbjct: 61 EEAGDHTLEGRMCSHTKAAINEADLILFMFDAKSGITPSDLNFASLVRKSGKPIVLVANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +++ A YE +SL E ISAEH LG S+L I + E + +K Sbjct: 121 SESKAAVGVEYEAWSLGLGEPCPISAEHGLGLSDLRDAIMDAIGK-------ERVFESKN 173 Query: 181 NEESPKENITSEG--------KSSVKNISK-PLRIAVVGRPNVGKSTLINRLLGYNRLLT 231 E+ S G K SV + SK PLRIAV GRPN GKSTLINR+LG +RLLT Sbjct: 174 AEKCVSVQSASVGDYVDDLEEKGSVCDESKQPLRIAVAGRPNTGKSTLINRMLGQDRLLT 233 Query: 232 GSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIV 291 G ++G+TRDS+S+ W W+ I++FDTAG+R+ S+I E LE+ +V +++++R E ++ Sbjct: 234 GPEAGLTRDSISVDWEWRGRHIKLFDTAGLRRKSKIQEKLEKLSVADTLRAIRFAEVVVI 293 Query: 292 LLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNL-LQDLRTKAIKNLPQIGD 350 + DAT PFEKQDL+I D V G ++A NKWD++ + + L +L K LPQ+ Sbjct: 294 VFDATAPFEKQDLQIADLVIREGRVPIIAFNKWDLIENNSQVTLANLHEKCAHLLPQVPG 353 Query: 351 IYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRL 410 + +SG+ G+G+D+LM +V+ ++++W RI+T+ LN WL+ +PPP IF R ++ Sbjct: 354 LRAVPLSGQYGQGIDNLMENVMMMHRMWNRRISTAKLNRWLETIVAHHPPPAIFGRRLKV 413 Query: 411 KYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 KYITQ+++ PP F+I C+ P +P+SY RYL N LR F + G+PIR+ ++S NP+ + Sbjct: 414 KYITQVKTRPPGFVISCSRPKTMPQSYLRYLSNGLRNTFDMPGVPIRISLRASDNPFAAR 473 >gi|254501747|ref|ZP_05113898.1| putative GTPase [Labrenzia alexandrii DFL-11] gi|222437818|gb|EEE44497.1| putative GTPase [Labrenzia alexandrii DFL-11] Length = 478 Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust. Identities = 199/472 (42%), Positives = 301/472 (63%), Gaps = 11/472 (2%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AIVG PNVGKSTLFNRLV K++A+V + PG+TRDR G+A + + F I+DTAG+ D Sbjct: 7 TVAIVGRPNVGKSTLFNRLVGKRLALVDDTPGVTRDRRPGEARLGDLRFTIIDTAGLEDA 66 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 S+ +M QTE AI A +LF+ID++AG+TP D + RK P+I+++NK + Sbjct: 67 DKASLEGRMRRQTEEAIETADAVLFVIDARAGVTPLDAHFAAVARKTTRPVILLANKAEG 126 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 R YE +SL E + +SAEH G S+L+ + + + + E E+ KR E Sbjct: 127 RAGVSGLYESFSLGLGEPIAVSAEHGEGLSDLYDAL-----KPHVDRVTEE-EDAKREEA 180 Query: 184 SPKENITSEGK-----SSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 ++ +G+ V I +PLR+A+VGRPN GKSTLIN+++G +R+LTG ++GIT Sbjct: 181 VTNVDVDEDGEIVDNEDPVGTIERPLRVAIVGRPNAGKSTLINQMVGEDRMLTGPEAGIT 240 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RDS+S+ W W + I++FDTAG+RK +R+ E LE+ +V ++++++ E +V LDAT+ Sbjct: 241 RDSISVDWTWHDRHIKLFDTAGIRKKARVQEKLEKLSVADALRAIKFAEVVVVTLDATMS 300 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 FEKQDL+I+D V G A+V+A+NKWD++ D+ + +R + QI + I T+SG Sbjct: 301 FEKQDLQIIDLVAREGRALVIAVNKWDLIEDREEAWKKIRDANERYFNQIRGVRIVTLSG 360 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 G+G+D L+ V W R++T+ LN WL++ +PPP + R R++Y+TQ ++ Sbjct: 361 IQGQGIDRLVEGVFAAYDAWNARVSTAGLNRWLERATTSHPPPAVAGRRVRIRYMTQPKT 420 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 PP F+ F + P ++PESY RYLIN LR F + G PIR+ ++ NPY K Sbjct: 421 RPPHFVAFSSRPEQLPESYTRYLINSLREKFDIQGTPIRLSYRKGDNPYAPK 472 >gi|240850057|ref|YP_002971450.1| GTP-binding protein EngA [Bartonella grahamii as4aup] gi|240267180|gb|ACS50768.1| GTP-binding protein EngA [Bartonella grahamii as4aup] Length = 474 Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust. Identities = 205/473 (43%), Positives = 303/473 (64%), Gaps = 12/473 (2%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M TIAIVG PNVGKSTLFNRLV +K+A+V + PG+TRDR A + + F++VDTAG+ Sbjct: 1 MSLTIAIVGRPNVGKSTLFNRLVGQKLALVDDKPGVTRDRRIHAAKLQDLRFDVVDTAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + + ++ +M T+ AI+EA LILF+ D+K+GITP D S +RK PI++V+NK Sbjct: 61 EEAGDHTLEGRMRSHTKAAIDEADLILFVFDAKSGITPSDLNFASLVRKSGKPIVLVANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 ++R A YE +SL E ISAEH LG S+L I + NNK Sbjct: 121 SESRAATGGEYEAWSLGLGEPCLISAEHGLGLSDLRDAIIDAVGSE------RAFGNNKE 174 Query: 181 NE-----ESPKENITS-EGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQ 234 + S +++ E + + + SKP+RIA+ GRPN GKSTLIN +L RLLTG + Sbjct: 175 EDITIQPASVSDDVNDLEEEELIYDESKPIRIAIAGRPNTGKSTLINSMLKQERLLTGPE 234 Query: 235 SGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLD 294 +G+TRDS+S+ W W+ I++FDTAG+R+ S+I E LE+ +V +++++R E +++ D Sbjct: 235 AGLTRDSISVDWEWRGRHIKLFDTAGLRRKSKIQEKLEKLSVADTLRAIRFAEVVVIVFD 294 Query: 295 ATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYIN 354 ATIPFEKQDL+I D V G V+A NKWD++ + L DL K + LPQ+ + Sbjct: 295 ATIPFEKQDLQIADLVIREGRVPVIAFNKWDLIENSQTTLIDLHEKCARFLPQVRGLRAV 354 Query: 355 TISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYIT 414 +SG+ G+G+D LM +V+ ++++W RI+T+ LN WL +PPP + R ++KYIT Sbjct: 355 PLSGQYGQGIDKLMENVMMMHRVWNRRISTAKLNQWLGTVVAHHPPPAVSGRRLKVKYIT 414 Query: 415 QIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 Q+++ PP F+I C+ +P+SY RYL+N LR F +SGIP+R+ ++S NP+ Sbjct: 415 QVKTRPPGFMISCSRAQSMPQSYLRYLVNGLREKFDMSGIPVRISLRASDNPF 467 >gi|13476158|ref|NP_107728.1| GTP-binding protein EngA [Mesorhizobium loti MAFF303099] gi|26006731|sp|Q986D9|DER_RHILO RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|14026918|dbj|BAB53514.1| GTP-binding protei [Mesorhizobium loti MAFF303099] Length = 479 Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust. Identities = 201/475 (42%), Positives = 297/475 (62%), Gaps = 6/475 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M + +AI+G PNVGKSTLFNRLV +K+A+V + PG+TRDR A + + F+++DTAG Sbjct: 1 MTFKVAIIGRPNVGKSTLFNRLVGRKLALVDDTPGVTRDRRVHAAKLYDLHFDVIDTAGF 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 D ++ +M QTE+AI+EA LI F ID+K+G+ P D +RK P+++V+NK Sbjct: 61 EDAGASTLPGRMRAQTEIAIHEADLIFFTIDAKSGLLPDDRTFAEIVRKSGKPVVLVANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQK--YPNHPLEMIENN 178 + + AQ E + L E + +SAEH G +L + + + + Sbjct: 121 AEAKGAQGGMLEAWELGLGEPIPVSAEHGQGMPDLRDAVIAALGEARAFGEEEEGEDDEI 180 Query: 179 KRNEESPKENIT---SEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQS 235 E E+I +E + N +KP+RIAVVGRPN GKSTLIN L+G RLLTG ++ Sbjct: 181 AATEVLIGEDIADPDAEDAHTYDN-TKPMRIAVVGRPNAGKSTLINALIGEERLLTGPEA 239 Query: 236 GITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDA 295 GITRDS+S+ W+W +++FDTAGMR+ +RI E LE +V+ ++++R E I++LDA Sbjct: 240 GITRDSISVDWDWHGRRLKLFDTAGMRRKARIHEKLEVMSVQDGLRAIRFAEIVIIVLDA 299 Query: 296 TIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINT 355 TIPFEKQDL+I D + G A V+A NKWD++ LL +LR K + LPQ+ I Sbjct: 300 TIPFEKQDLQIADLIIREGRAPVIAFNKWDLIDHPQELLAELREKTERLLPQVRGIQAVP 359 Query: 356 ISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQ 415 +S TG GLD LM +VL +K+W +R++T LN WL+ +PPP + R ++KY+TQ Sbjct: 360 VSAETGRGLDKLMDAVLRTHKVWNSRVSTGKLNRWLEAILAHHPPPAVAGRRLKVKYVTQ 419 Query: 416 IQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 ++ PP F++ C+ P+ +P+SY RYL N LR F + G+PIR+ ++S NP+ + Sbjct: 420 AKTRPPGFVVQCSRPDAMPQSYVRYLSNSLREAFDMPGVPIRIALRTSDNPFAGR 474 >gi|319408190|emb|CBI81843.1| GTP-binding protein [Bartonella schoenbuchensis R1] Length = 469 Score = 419 bits (1076), Expect = e-115, Method: Compositional matrix adjust. Identities = 203/475 (42%), Positives = 304/475 (64%), Gaps = 15/475 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M TIAIVG PNVGKSTLFNRLV +K+A+V N PG+TRDR +A + + FN++DTAG+ Sbjct: 1 MSLTIAIVGRPNVGKSTLFNRLVGQKLALVDNKPGVTRDRRVHEARLQDLRFNVIDTAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 D + ++ +M QT+ AI EA LILF++D+K+G+TP D + S +RK PI+++ NK Sbjct: 61 EDASDQTLEGRMFFQTKAAIKEADLILFVLDAKSGVTPSDCSFASLVRKSGKPIVLIVNK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 ++++A YE +SL E ISAEH LG S+L I + + E + + Sbjct: 121 SESKMAIEGGYEAWSLGLGEPCAISAEHGLGFSDLRDAIVNAVGK---DKAFEQV----K 173 Query: 181 NEESPKENITS--------EGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTG 232 EE S E + V + SKP+RIA+ GRPN GKSTLIN +LG +RLLTG Sbjct: 174 EEECALTRCVSLDNDFDDLEERGFVYDESKPIRIAIAGRPNTGKSTLINSMLGQDRLLTG 233 Query: 233 SQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVL 292 ++GITRDS+S+ W W+ ++FDTAG+R+ ++ E LE+ +V +++++R E +++ Sbjct: 234 PEAGITRDSISVDWEWRGRCFKLFDTAGLRRKLKVQEKLEKLSVADTLRAIRFSEVVVIV 293 Query: 293 LDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIY 352 DAT+PFEKQDL+I D V G ++A NKWD++ + +L DL K + LPQ+ + Sbjct: 294 FDATMPFEKQDLQIADLVIREGRVPIIAFNKWDLIENCQEVLADLHEKCARLLPQVRGLR 353 Query: 353 INTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKY 412 +SG+ G+G+D LM +++ I+++W RI T LN WL+ +PPP + R ++KY Sbjct: 354 AVPLSGQYGKGIDKLMENIMMIHRVWNRRIPTGKLNRWLETIVAHHPPPAVSGRRLKIKY 413 Query: 413 ITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 ITQI++ PP F+I C+ + +P+SY RYL N LR F + G+PIR+ ++S NP+ Sbjct: 414 ITQIKTRPPGFMISCSRSDAMPQSYLRYLSNGLRDTFDMPGVPIRLLLRTSDNPF 468 >gi|85703427|ref|ZP_01034531.1| GTP-binding protein EngA [Roseovarius sp. 217] gi|85672355|gb|EAQ27212.1| GTP-binding protein EngA [Roseovarius sp. 217] Length = 487 Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust. Identities = 203/479 (42%), Positives = 306/479 (63%), Gaps = 19/479 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +++AIVG PNVGKSTLFNRLV K++A+V N PG+TRD G A + + F ++DTAG+ Sbjct: 1 MTFSLAIVGRPNVGKSTLFNRLVGKRLALVDNQPGVTRDLREGAARLGDLRFTVIDTAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + + S+ +M TE A++ A + LFLID++AG+TP D + LRK++ +I+ +NK Sbjct: 61 EEATDESLQGRMRKLTERAVDMADVCLFLIDARAGVTPTDEILAEILRKRSAHVILAANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + A E + L E + +SAEH G ++L+S + PL + Sbjct: 121 AEGSAADAGVIEAWGLGLGEPIRLSAEHGEGLNDLYSQLM----------PLSDAFEKRA 170 Query: 181 NEESPKENITSEGKSSVKNI-------SKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGS 233 E+P+ ++ E +++ ++P+++AVVGRPN GKSTLIN++LG RLLTG Sbjct: 171 EAEAPEVDVALEEDEDDEDLTYRKPTKARPMQVAVVGRPNAGKSTLINKILGEERLLTGP 230 Query: 234 QSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLL 293 ++GITRD++S+ +W P+ IFDTAGMRK +RI + LE+ +V +++V+ E +VLL Sbjct: 231 EAGITRDAISLQIDWDGLPVRIFDTAGMRKKARIQDKLEKLSVSDGLRAVKFAEVVVVLL 290 Query: 294 DATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYI 353 DA IPFE+QDLRI D G AVV+A+NKWDM DK + +++LR + LPQ+ + Sbjct: 291 DAAIPFEQQDLRIADLAEREGRAVVVAINKWDMEPDKSDKIRELREAFERLLPQLRGAPL 350 Query: 354 NTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYI 413 T+S +TG+GLD L +V + +++W R+TT+ LN WL Q+PPP + +L+Y+ Sbjct: 351 VTVSAKTGKGLDRLRDAVSKAHEVWNRRVTTAQLNRWLVGMLEQHPPPAPGGKRVKLRYM 410 Query: 414 TQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCF--QSSKNPYIKK 470 TQ ++ PP F++ C+ P K+PESY RYL+N LR +F + G PIR+ F Q+ KNPY K Sbjct: 411 TQAKTRPPGFVVMCSHPEKLPESYSRYLVNGLRTDFDMPGTPIRLYFRSQADKNPYKAK 469 >gi|114704716|ref|ZP_01437624.1| GTP-binding protein [Fulvimarina pelagi HTCC2506] gi|114539501|gb|EAU42621.1| GTP-binding protein [Fulvimarina pelagi HTCC2506] Length = 470 Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust. Identities = 200/475 (42%), Positives = 301/475 (63%), Gaps = 16/475 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + +IAI+G PNVGKSTLFNRLV K++A+V + PG+TRDR G+ + + F IVDTAG+ Sbjct: 1 MVSIAIIGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDRRPGEGRLMDLSFEIVDTAGLE 60 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 + + S++ +M +QTE AI A L LF++D K+GITP D R+ I++V+NK Sbjct: 61 NAHSESLSGRMREQTEEAIRIADLSLFMVDVKSGITPEDQDFAEVARRAGGKIVLVANKA 120 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 + R + + + Y+L + V ISAEH G +L + + IE R+ Sbjct: 121 EARDSDIGYLDAYALGLGDPVAISAEHGEGMGDLRDALVEALG----------IEVFDRD 170 Query: 182 EESPKENITS------EGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQS 235 + E I + + +KPLR+A+VGRPN GKSTL+NR+LG R+LTG ++ Sbjct: 171 AVASDEAIVDVPVPEDDDTPLPYDETKPLRMAIVGRPNAGKSTLVNRMLGEERMLTGPEA 230 Query: 236 GITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDA 295 GITRDS+S+ W W+ +IFDTAG+R+ +R+ E LE+ +V ++++++ E +++LD Sbjct: 231 GITRDSISVEWEWRGRHFKIFDTAGLRRKARVQEKLEKLSVADALRALKFAEVVVIVLDV 290 Query: 296 TIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINT 355 TIPFE+QDL IVD + G A V+A NKWD+ D+ L ++LR K + LPQ+ I Sbjct: 291 TIPFERQDLTIVDLIAREGRAPVIAFNKWDIAEDRQELAKELREKTERLLPQVRGIRTVM 350 Query: 356 ISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQ 415 ISG TGEGLD LM +V++ ++ W +R+TT+ LN WL++T +PPP + R +K++TQ Sbjct: 351 ISGETGEGLDRLMKAVVDTHRTWNSRVTTAKLNQWLERTIAHHPPPAVSGRRVTIKFMTQ 410 Query: 416 IQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +++ PP+F++ T P I SY RY+IN LR +F L G+PIR+ + +NPY K Sbjct: 411 VKTRPPTFMLSTTRPEAIGASYSRYIINGLRDSFDLKGVPIRLGLRKPRNPYAAK 465 >gi|220924493|ref|YP_002499795.1| GTP-binding protein EngA [Methylobacterium nodulans ORS 2060] gi|219949100|gb|ACL59492.1| small GTP-binding protein [Methylobacterium nodulans ORS 2060] Length = 447 Score = 416 bits (1069), Expect = e-114, Method: Compositional matrix adjust. Identities = 201/466 (43%), Positives = 295/466 (63%), Gaps = 25/466 (5%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AIVG PNVGKSTLFNRLV +K+A+V + PG+TRDR G+A + ++F I+DTAG+ + Sbjct: 5 TVAIVGRPNVGKSTLFNRLVGRKLALVDDRPGVTRDRREGEARLGHLLFTIIDTAGLEEA 64 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + S+A +M QTE AI EA +LF+ID++AG+ P D +R+ + P+I+++NK + Sbjct: 65 DSESLAGRMRAQTEAAIAEADAVLFVIDARAGLLPADQPFAELVRRADKPVILLANKAEG 124 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 YE + L + V +SAEH G +L + ++ + Sbjct: 125 GAGLAGAYEAFGLGLGDPVPVSAEHGEGMGQLLDALAEVLPE------------------ 166 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 P E G +PL++A+VGRPN GKSTLINR+LG NRLL G ++GITRDS+S Sbjct: 167 -PDEAEDEAGGD------RPLKVAIVGRPNAGKSTLINRMLGENRLLVGPEAGITRDSIS 219 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + W W+ I++ DTAGMR+ +R+ + LE+ V +++VR E +VLLDATIPFEKQD Sbjct: 220 LDWEWRGRRIKLHDTAGMRRRARVDDKLEKLAVSDGLRAVRFAEVVVVLLDATIPFEKQD 279 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 L IVD V G A+V+ LNKWD+V+D+ LL++L+ KA + LPQ+ + +SG G G Sbjct: 280 LTIVDLVEQEGRALVIGLNKWDLVADQPGLLKELKEKAARLLPQVRGAAVVPLSGLAGNG 339 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 +D LM +V+ ++W R+ T+ +N WL + NPPP I R +++Y TQ+++ PP F Sbjct: 340 IDRLMQAVVAAFEVWNRRVPTARINQWLSEAVQANPPPAISGRRIKIRYATQVKARPPHF 399 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIK 469 +F N +P+SY RYL+N LR F L G+PIR+ ++SKNP+ K Sbjct: 400 ALFGNQLNVLPKSYTRYLVNGLRDTFDLPGVPIRLSLRTSKNPFDK 445 >gi|91977473|ref|YP_570132.1| GTP-binding protein EngA [Rhodopseudomonas palustris BisB5] gi|123748964|sp|Q135K8|DER_RHOPS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|91683929|gb|ABE40231.1| Small GTP-binding protein domain [Rhodopseudomonas palustris BisB5] Length = 460 Score = 415 bits (1067), Expect = e-114, Method: Compositional matrix adjust. Identities = 198/470 (42%), Positives = 297/470 (63%), Gaps = 15/470 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +T AI+G PNVGKSTLFNRLV +K+A+V + PG+TRDR G+ + + F I+DTAG+ Sbjct: 1 MSFTFAIIGRPNVGKSTLFNRLVGQKLALVDDTPGVTRDRREGEGRLGDLEFTIIDTAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 +G S+ +M QTE AI A ++F+ D++AG+TP D A F R+ N P+++V+NK Sbjct: 61 DEGAKGSLTARMQQQTETAIELADALMFVFDARAGLTPNDRAFADFARRANKPVVLVANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + + + E Y+L + V+ISAEH G SEL+ + + + P+ LE Sbjct: 121 SEGKAGEIGAMESYALGLGDPVQISAEHGEGLSELYDALRALMPE--PDVELE------- 171 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 ++ + +T E S +P+R+A+VGRPN GKST INRLLG +RLLT ++G TRD Sbjct: 172 -DDEEIDGLTEEDFSK-----RPIRVAIVGRPNAGKSTFINRLLGEDRLLTSPEAGTTRD 225 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+++ NWK IFDTAG+R+ SRI E LE+ +V ++++VR E ++++D+ FE Sbjct: 226 SIAVEVNWKGRDFRIFDTAGLRRRSRIEEKLEKLSVADALRAVRFAEVVVLMMDSQNRFE 285 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 +QDLRI D + G A+V+A+NKWD+V + + LRT A LPQI + I SG Sbjct: 286 EQDLRIADLIEREGRALVIAVNKWDLVERQGGQIAQLRTDADHWLPQIKGVPIVATSGML 345 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 GEG+D +M ++ + +W TR+ T+ LN W ++ QNPPP + R +L Y+TQ ++ P Sbjct: 346 GEGVDRMMEAIQDAYAVWNTRVPTAALNRWFEQAVAQNPPPAVAGRRLKLNYVTQTKARP 405 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 PSF++FC+ + +P+SY RYL+N LR F L G P+R+ + NP+ K Sbjct: 406 PSFVVFCSRADAVPQSYLRYLVNSLRGVFELPGTPVRIMLREKANPFAHK 455 >gi|296446239|ref|ZP_06888186.1| ribosome-associated GTPase EngA [Methylosinus trichosporium OB3b] gi|296256276|gb|EFH03356.1| ribosome-associated GTPase EngA [Methylosinus trichosporium OB3b] Length = 468 Score = 415 bits (1066), Expect = e-114, Method: Compositional matrix adjust. Identities = 199/468 (42%), Positives = 297/468 (63%), Gaps = 9/468 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +T+AI+G PNVGKSTLFNRLV KK+A+V + PG+TRDR G+A + + F I+DTAG+ Sbjct: 4 MTFTLAIIGRPNVGKSTLFNRLVGKKLALVDDRPGVTRDRREGEARLADLRFTIIDTAGL 63 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 +G + ++ +M QTE AI A ILF+ID++ G+TP D +R+ +++ +NK Sbjct: 64 EEGASATLEGRMRAQTEAAIESADAILFMIDARVGVTPDDKYFADLVRRAGKKVVLAANK 123 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + + + E Y L + V +SAEH G EL+ + + E + Sbjct: 124 SEGKKGEAGLVESYELGLGDPVPLSAEHGEGLGELYDALLEALP--------EATQPPDE 175 Query: 181 NEESPKE-NITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITR 239 +EE+ + I+++ S + +KPLRIAVVGRPN GKSTLINRLLG +RLLTG ++GITR Sbjct: 176 DEEATTDVEISADEDGSEADPTKPLRIAVVGRPNAGKSTLINRLLGEDRLLTGPEAGITR 235 Query: 240 DSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPF 299 DS+ + + W++ +++FDTAG+RK +R+ + LE+ ++++VR E ++LLD+ IPF Sbjct: 236 DSIGVEFRWRDREMKLFDTAGLRKRARVVDKLEKLAGADALRAVRFSEVVVLLLDSAIPF 295 Query: 300 EKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGR 359 EKQDL I D G AVV+AL KWD V D L LR +A + LPQI + +SG Sbjct: 296 EKQDLTIADLAAREGRAVVIALGKWDAVDDPGTRLAKLREEAERLLPQIRGCPVVPVSGA 355 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 TG GL+ LM +VLE +++W RI+T+ LN WL+ + PPP + R +++Y+TQ ++ Sbjct: 356 TGYGLEGLMRAVLEAHEVWNRRISTARLNRWLESAIDETPPPAVSGRRIKIRYMTQAKAR 415 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 PP F++F ++P SY R+L N LR F+L G PIR+ +S +NP+ Sbjct: 416 PPYFILFGNQLEELPASYMRFLTNGLRKAFALPGTPIRISVRSGENPF 463 >gi|218679763|ref|ZP_03527660.1| GTP-binding protein EngA [Rhizobium etli CIAT 894] Length = 437 Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust. Identities = 196/435 (45%), Positives = 287/435 (65%), Gaps = 1/435 (0%) Query: 36 ITRDRLYGQAIINGVIFNIVDTAGIADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAG 95 +TRDR G A + G+ F I+DTAG+ + S+ +M QTE AI+EA L LF++D+K G Sbjct: 1 MTRDRRPGDARLMGLTFTIIDTAGLEEADEESLQGRMRAQTEAAIDEADLSLFVVDAKNG 60 Query: 96 ITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 +TP D A+ LR++ P+++V+NK + R + FY+ Y+L E ISAEH G +L Sbjct: 61 LTPVDTALAEMLRRRGKPVVLVANKSEARGSDSGFYDAYTLGLGEPTPISAEHGQGMLDL 120 Query: 156 HSVIFKIFKQKYPNHPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVG 215 I + K + E + + + E + + +KPLR+A+VGRPN G Sbjct: 121 RDAIVEAIG-KDRAYAKEDVAVTDVDIPHAADEGEDEDEEPAYDDTKPLRVAIVGRPNAG 179 Query: 216 KSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKT 275 KSTLINR LG +RLLTG ++GITRDS+S+ W+W+ I++FDTAGMR+ +R+TE LE+ + Sbjct: 180 KSTLINRFLGEDRLLTGPEAGITRDSISVEWDWRGRTIKMFDTAGMRRKARVTEKLEKLS 239 Query: 276 VKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQ 335 V +++++R ET +++ DATIPFEKQDL+IVD V G A VLA NKWDM+ D+ +L Sbjct: 240 VADALRAIRFAETVVIVFDATIPFEKQDLQIVDLVLREGRAAVLAFNKWDMIEDRQAVLA 299 Query: 336 DLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQ 395 DLR K + LPQ I ISG+TG GLD LM S+++ +++W RI+T+ LN WL+ Q Sbjct: 300 DLREKTDRLLPQARGIRAVPISGQTGWGLDKLMQSIIDTDRVWNKRISTARLNRWLETQQ 359 Query: 396 LQNPPPTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIP 455 +Q+PPP + R +LKY+TQ+++ PP+F+I CT + +PESY RYLIN LR +F + +P Sbjct: 360 IQHPPPAVSGRRIKLKYMTQVKARPPAFMISCTRSDALPESYTRYLINGLRADFDMPSVP 419 Query: 456 IRMCFQSSKNPYIKK 470 IR+ F+S+ P+ K Sbjct: 420 IRIHFRSADIPFESK 434 Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 55/125 (44%), Gaps = 12/125 (9%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG- 63 +AIVG PN GKSTL NR + + + G GITRD + + G + DTAG+ Sbjct: 170 VAIVGRPNAGKSTLINRFLGEDRLLTGPEAGITRDSISVEWDWRGRTIKMFDTAGMRRKA 229 Query: 64 ------KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIV 117 + S+A + AI A ++ + D+ D I + ++ ++ Sbjct: 230 RVTEKLEKLSVADALR-----AIRFAETVVIVFDATIPFEKQDLQIVDLVLREGRAAVLA 284 Query: 118 SNKMD 122 NK D Sbjct: 285 FNKWD 289 >gi|149913922|ref|ZP_01902454.1| Small GTP-binding protein domain [Roseobacter sp. AzwK-3b] gi|149812206|gb|EDM72037.1| Small GTP-binding protein domain [Roseobacter sp. AzwK-3b] Length = 495 Score = 412 bits (1060), Expect = e-113, Method: Compositional matrix adjust. Identities = 203/475 (42%), Positives = 301/475 (63%), Gaps = 5/475 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +T+AIVG PNVGKSTLFNRLV K++A+V + PG+TRD G+A + + F ++DTAG+ Sbjct: 1 MSFTLAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDLREGEAKLGDLRFTVIDTAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + + S+ +M TE A++ A + LFLID++AG+TP D + LRK+ +I+ +NK Sbjct: 61 EEATDESLQGRMRKLTERAVDMADVCLFLIDARAGVTPTDEVLAEILRKRADRVILGANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN-- 178 + A YE Y L E V +SAEH G +EL+S++ I + + E + Sbjct: 121 AEGSAADAGIYEAYGLGLGEPVRLSAEHGEGMNELYSLLQPISDEFEDRARADAPETDVI 180 Query: 179 -KRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGI 237 + E +++ + + +P+++AVVGRPN GKSTLIN +LG +RLLTG ++GI Sbjct: 181 LDEDIEDEPDDVAGPTAARIPTPERPMQVAVVGRPNAGKSTLINTILGEDRLLTGPEAGI 240 Query: 238 TRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATI 297 TRD++S+ +W P+ IFDTAGMRK +R+ + +E+ +V +++V+ E +VLLDA I Sbjct: 241 TRDAISLQIDWDGLPVRIFDTAGMRKKARVQDKVEKLSVSDGLRAVKFAEVVVVLLDAAI 300 Query: 298 PFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTIS 357 PFE+QDLRI D G AVV+A+NKWD+ DK L+DLR + LPQ+ + T+S Sbjct: 301 PFEQQDLRIADLAEREGRAVVVAVNKWDIEDDKQQKLRDLRESFERLLPQLRGAPLVTVS 360 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 +TG+GLD L +V + +W R+ T+ LN WL +PPP R +L+Y+TQ + Sbjct: 361 AKTGKGLDRLRDAVAKAYDVWNRRVPTAQLNRWLAGMVEAHPPPAPGGRRIKLRYMTQAK 420 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIR--MCFQSSKNPYIKK 470 + PP F++ C+ P+K+PESY RYL+N LR +F + G PIR M QS +NPY K Sbjct: 421 TRPPHFVVMCSHPDKLPESYSRYLVNALRQDFDMPGTPIRLHMRSQSDRNPYKSK 475 >gi|254487934|ref|ZP_05101139.1| GTP-binding protein [Roseobacter sp. GAI101] gi|214044803|gb|EEB85441.1| GTP-binding protein [Roseobacter sp. GAI101] Length = 491 Score = 412 bits (1060), Expect = e-113, Method: Compositional matrix adjust. Identities = 205/469 (43%), Positives = 297/469 (63%), Gaps = 2/469 (0%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +T+AIVG PNVGKSTLFNRLV KK+A+V + PG+TRD G A + + F ++DTAG+ Sbjct: 1 MSFTLAIVGRPNVGKSTLFNRLVGKKLALVDDQPGVTRDLREGAARLADLRFTVIDTAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + + S+ +M TE A++ A + LF+ID++ G+TP D LRKK+ +I+ +NK Sbjct: 61 EEVTDDSLQGRMRRLTERAVDMADICLFMIDARVGVTPSDLVFADILRKKSAHVILAANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + R A E YSL E + +SAEH G ++L++ + I + E + Sbjct: 121 GEGRAADAGVLEAYSLGLGEPIRMSAEHGEGLNDLYTHLMPIADGFSERVDTDTPETDVD 180 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 E E + V +KPL++AVVGRPN GKSTLIN+++G +RLLTG ++GITRD Sbjct: 181 LTEEEAELGDEDAPVPVPTNAKPLQVAVVGRPNAGKSTLINQIMGEDRLLTGPEAGITRD 240 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 ++S+ W+ P+ IFDTAGMRK ++I E LE+ +V +++V+ E +VLLDA IPFE Sbjct: 241 AISLRTVWEGVPMRIFDTAGMRKKAKIQEKLEKLSVSDGLRAVKFAEVVVVLLDAEIPFE 300 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 +QDLRI D G AVV+A+NKWD+ +DK L+DLR + LPQ+ + T+S +T Sbjct: 301 QQDLRIADLAEREGRAVVVAVNKWDLETDKQGKLKDLRESFERLLPQLKGAPLVTVSAKT 360 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G GLD L +++ +W R+TT+ LN WL +PPP + +L+Y+TQ ++ P Sbjct: 361 GRGLDRLHNAIMRAYDVWNRRVTTAQLNRWLAGMMEAHPPPAPQGKRIKLRYMTQAKTRP 420 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIR--MCFQSSKNPY 467 P F++ C+ P+K+PESY RYL+N LRI+F + G PIR M QS NPY Sbjct: 421 PGFVVMCSHPDKVPESYNRYLVNGLRIDFDMPGSPIRLWMRGQSDANPY 469 >gi|99080832|ref|YP_612986.1| GTP-binding protein EngA [Ruegeria sp. TM1040] gi|123077693|sp|Q1GHZ2|DER_SILST RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|99037112|gb|ABF63724.1| Small GTP-binding protein domain [Ruegeria sp. TM1040] Length = 492 Score = 412 bits (1059), Expect = e-113, Method: Compositional matrix adjust. Identities = 202/480 (42%), Positives = 303/480 (63%), Gaps = 15/480 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +T+AIVG PNVGKSTLFNRLV KK+A+V + PG+TRD G+A + + F ++D+AG+ Sbjct: 1 MSFTLAIVGRPNVGKSTLFNRLVGKKLALVDDQPGVTRDLREGEARLGDLRFTVIDSAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 D + S+ +M TE A+ A + LFLID++AG+TP D LRKK+ +I+ +NK Sbjct: 61 EDATDNSLEGRMRRLTERAVEMADVCLFLIDARAGVTPTDEVFAEILRKKSAHVILAANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF-------KIFKQKYPNHPLE 173 + A E Y L E + +S EH G ++L+S + K+ ++ P + Sbjct: 121 SEGSAADAGVLEAYGLGLGEPIRMSGEHGEGLNDLYSELLPVSEKFEKLAEETAPE--TD 178 Query: 174 MIENNKRNEE-SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTG 232 ++ + NE + E I + + V + KPL++AVVGRPN GKSTLIN++LG +RLLTG Sbjct: 179 VVLDEDENEAFNAGEEIAA---TPVPTLEKPLQVAVVGRPNAGKSTLINKILGEDRLLTG 235 Query: 233 SQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVL 292 ++GITRD++S+ +W P+ IFDTAGMRK +++ E LE+ +V +++V+ E +VL Sbjct: 236 PEAGITRDAISLKIDWSGTPMRIFDTAGMRKKAKVQEKLEKLSVSDGLRAVKFAEVVVVL 295 Query: 293 LDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIY 352 LDA IPFE+QDLRI D G AVV+A+NKWD+ +K L+ L+ + LPQ+ Sbjct: 296 LDAAIPFEQQDLRIADLAEREGRAVVIAVNKWDIEDEKQEKLKALKEAFERLLPQLRGAP 355 Query: 353 INTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKY 412 + T+S +TG GLD L ++++ + +W R+ T+ LN WL Q+PPP + +L+Y Sbjct: 356 LVTVSAKTGRGLDRLHAAIMKAHDVWNRRVPTAALNRWLAGMLEQHPPPAPQGKRIKLRY 415 Query: 413 ITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCF--QSSKNPYIKK 470 +TQ ++ PP F++ C+ P+K+P SY RYL+N LR +F + G PIR+ Q KNPY K Sbjct: 416 MTQAKTRPPGFVVMCSHPDKMPASYNRYLVNGLREDFDMPGTPIRLTLRGQGDKNPYKGK 475 >gi|182679273|ref|YP_001833419.1| GTP-binding protein EngA [Beijerinckia indica subsp. indica ATCC 9039] gi|182635156|gb|ACB95930.1| small GTP-binding protein [Beijerinckia indica subsp. indica ATCC 9039] Length = 470 Score = 412 bits (1058), Expect = e-113, Method: Compositional matrix adjust. Identities = 198/476 (41%), Positives = 302/476 (63%), Gaps = 17/476 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKSTLFNRLV KK+A+V + PG+TRDR G A + + F I+DTAG+ Sbjct: 1 MLTIAIIGRPNVGKSTLFNRLVGKKLALVDDRPGVTRDRREGDAKLGDLTFKIIDTAGLE 60 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 +G +++ +M QTE AI +A I FL D++ G+TP D +R+ P+++++NK Sbjct: 61 EGHEETLSGRMRAQTEAAIEQADGIFFLFDARVGLTPEDRFFAQLVRRAGKPLVLIANKA 120 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 + R+ E + L + V +SAEH G ++L+ + ++ +P E + Sbjct: 121 EGRVGTAGAIEGFDLGLGDPVPLSAEHGEGLADLYEAL----RENWPE------ETEAPD 170 Query: 182 EESPKENITSEGK---SSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 E P E + G+ S +++KPLRIAVVGRPN GKSTL+NRLLG RLLTG ++G+T Sbjct: 171 EAGPAEERLTLGEDEDGSELDLTKPLRIAVVGRPNAGKSTLLNRLLGEERLLTGPEAGLT 230 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RDS+ + W+ ++IFDTAG+R+ ++I + LE+ ++++VR E +VLLDATIP Sbjct: 231 RDSIGLDLEWRGRKMKIFDTAGLRRRAKIEDKLEKLAAADALRAVRFAEVVVVLLDATIP 290 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMV----SDKLNLLQDLRTKAIKNLPQIGDIYIN 354 FEKQDL I D V G A+V+ALNKWD++ +++ L LR +A + LPQ+ + Sbjct: 291 FEKQDLTIADLVEREGRALVIALNKWDLIGADDAERAARLTLLREEAGRLLPQVKGTPVV 350 Query: 355 TISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYIT 414 +S T EGLD LM ++ +++ +W RI T+ LN WL+ Q PPP + R +++Y+T Sbjct: 351 PVSATTAEGLDRLMAAIDKVHVIWNKRIATARLNRWLEGALEQTPPPAVSGRRIKIRYMT 410 Query: 415 QIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 Q+++ PP FL+F + +P SY+R+L+N LR F L G+PIR+ +++ NPY + Sbjct: 411 QLRARPPYFLLFGNQLDALPTSYERFLVNGLRQAFDLPGVPIRLSKKTTDNPYASR 466 >gi|154253924|ref|YP_001414748.1| small GTP-binding protein [Parvibaculum lavamentivorans DS-1] gi|171769688|sp|A7HYV8|DER_PARL1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|154157874|gb|ABS65091.1| small GTP-binding protein [Parvibaculum lavamentivorans DS-1] Length = 473 Score = 412 bits (1058), Expect = e-113, Method: Compositional matrix adjust. Identities = 191/470 (40%), Positives = 296/470 (62%), Gaps = 1/470 (0%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M + +AIVG PNVGKSTLFNRLV KK+A+V + PG+TRDR G+A + + F I+DTAG+ Sbjct: 1 MSFKVAIVGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRREGEARLGDLSFTIIDTAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + ++ +M TE AI +A L L LID++AG+TP D + + LRK P+I+ +NK Sbjct: 61 EEAATGTLEARMRIGTERAIADADLCLLLIDARAGVTPLDKSFSQILRKSPTPVILAANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + + E Y L + +SAEH G +L+ + + K + + +E+ Sbjct: 121 CEGGAGKAGRMEAYELGLGAPLPLSAEHGEGLGDLYDALAQFAKGLEADDAGQAVEDALA 180 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 E+ + ++ PLR+A++GRPNVGKSTL+N+LLG +R+LTG ++GITRD Sbjct: 181 EEQDADAGFDPDAPYE-PDLEAPLRVAIIGRPNVGKSTLVNQLLGEDRMLTGPEAGITRD 239 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ I W W+ ++++DTAGMR+ +R+TE LE+ +V ++++VR E ++LLDAT PFE Sbjct: 240 SIGIEWEWRGRRVKLWDTAGMRRRARVTEKLEKLSVADTLRAVRFAEVVVILLDATQPFE 299 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 +QDL I D V G +++ +NKWDMV++ +L+ L+ + + LPQI + I T+S T Sbjct: 300 RQDLHIADLVEQEGRGLLIVVNKWDMVAEPQEVLRVLKEELERLLPQIRGVPIVTLSALT 359 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G G D LM ++ ++ W R+ T+ LN W+Q+ ++ PP R LKYI+Q++S P Sbjct: 360 GRGTDKLMPAIERVHTFWNARVPTARLNRWMQEAVSRHQPPAAHGRPVNLKYISQVKSRP 419 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 P+F +F + + +P SY+RYL+N LR F L G+PIR+ + + NPY + Sbjct: 420 PTFAVFSSRADDVPTSYRRYLVNGLRETFDLPGVPIRLFMRKTHNPYADR 469 >gi|259419101|ref|ZP_05743018.1| ribosome-associated GTPase EngA [Silicibacter sp. TrichCH4B] gi|259345323|gb|EEW57177.1| ribosome-associated GTPase EngA [Silicibacter sp. TrichCH4B] Length = 492 Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust. Identities = 204/481 (42%), Positives = 303/481 (62%), Gaps = 17/481 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +T+AIVG PNVGKSTLFNRLV KK+A+V + PG+TRD G+A + + F ++D+AG+ Sbjct: 1 MSFTLAIVGRPNVGKSTLFNRLVGKKLALVDDQPGVTRDLREGEARLGDLRFTVIDSAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 D + S+ +M TE A+ A + LF+ID++AG+TP D LRKK+ +I+ +NK Sbjct: 61 EDATDNSLEGRMRRLTERAVEMADVCLFIIDARAGVTPTDEMFAEILRKKSAHVILAANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF-------KIFKQKYP--NHP 171 + A E Y L E + +S EH G ++L+S + K+ ++ P + Sbjct: 121 SEGSAADAGVIEAYGLGLGEPIRMSGEHGEGLNDLYSELLPVSEKFEKLAEETAPATDVV 180 Query: 172 LEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLT 231 L+ EN NE E I + + V + KPL++AVVGRPN GKSTLIN++LG +RLLT Sbjct: 181 LDEDENEAFNE---GEEIAA---TPVPTMEKPLQVAVVGRPNAGKSTLINKILGEDRLLT 234 Query: 232 GSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIV 291 G ++GITRD++S+ +W P+ IFDTAGMRK +++ E LE+ +V +++V+ E +V Sbjct: 235 GPEAGITRDAISLKIDWSGTPMRIFDTAGMRKKAKVQEKLEKLSVSDGLRAVKFAEVVVV 294 Query: 292 LLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDI 351 LLDA IPFE+QDLRI D G AVV+A+NKWD+ +K L+ L+ + LPQ+ Sbjct: 295 LLDAAIPFEQQDLRIADLAEREGRAVVVAVNKWDIEDEKQEKLKALKEAFERLLPQLRGA 354 Query: 352 YINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLK 411 + T+S +TG GLD L ++++ + +W R+ T+ LN WL Q+PPP + +L+ Sbjct: 355 PLVTVSAKTGRGLDRLHAAIMKAHDVWNRRVPTAALNRWLAGMLEQHPPPAPQGKRIKLR 414 Query: 412 YITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCF--QSSKNPYIK 469 Y+TQ ++ PP F++ C+ P+K+P SY RYL+N LR +F + G PIR+ Q KNPY Sbjct: 415 YMTQAKTRPPGFVVMCSHPDKMPASYNRYLVNGLREDFDMPGTPIRLTLRGQGDKNPYKG 474 Query: 470 K 470 K Sbjct: 475 K 475 >gi|84503431|ref|ZP_01001491.1| GTP-binding protein EngA [Oceanicola batsensis HTCC2597] gi|84388218|gb|EAQ01170.1| GTP-binding protein EngA [Oceanicola batsensis HTCC2597] Length = 494 Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust. Identities = 204/480 (42%), Positives = 294/480 (61%), Gaps = 20/480 (4%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +T+AIVG PNVGKSTLFNRLV KK+A+V N PG+TRD G A + + F ++DTAG+ Sbjct: 1 MSFTLAIVGRPNVGKSTLFNRLVGKKLALVDNQPGVTRDLREGDARLGHLKFTVIDTAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + + S+ +M TE A+ A + LF+ID++ G+TP DH LRK++ +I+ +NK Sbjct: 61 EEATDESLQGRMRKLTERAVGMADVCLFVIDARVGVTPADHVFADILRKRSAHVILAANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + R + +E Y L E + +SAEH G EL V+ P + Sbjct: 121 AEGRAGEAGLFEAYELGLGEPLRLSAEHGEGMGELIEVL-------DPLAEAYAAREREA 173 Query: 181 NEESPKENITSE-----------GKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRL 229 +T E +S + ++PL++AVVGRPN GKSTLINR+LG RL Sbjct: 174 AARIADAGLTPETDTDVDEEPEEDESWRPSDARPLQVAVVGRPNAGKSTLINRILGEERL 233 Query: 230 LTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETT 289 LTG ++GITRDS+S+ +W+ P+ +FDTAGMRK +++ + LE+ +V +++V+ E Sbjct: 234 LTGPEAGITRDSISLRLDWEGLPVRLFDTAGMRKRAKVQDKLEKLSVSDGLRAVKFAEVV 293 Query: 290 IVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIG 349 +VLLDA IPFE+QDLRI D G AVV+A+NKWD+ DK L+DLR + LPQ+ Sbjct: 294 VVLLDAAIPFEQQDLRIADLAEREGRAVVVAVNKWDLEDDKQGKLRDLRESFERLLPQLR 353 Query: 350 DIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNR 409 + T+S RTG GLD L +++ ++ W RI+T+ LN WL Q+PPP + R Sbjct: 354 GAPLVTVSARTGRGLDRLRTAIVSAHETWNRRISTAKLNRWLTGMLEQHPPPAPGGKRIR 413 Query: 410 LKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIR--MCFQSSKNPY 467 L+Y+TQ ++ PP F++ C+ P +P+SY RYL+N LR +F + G PIR M QS +NPY Sbjct: 414 LRYMTQAKTRPPGFVVMCSHPQDVPDSYSRYLVNGLRTDFDMPGTPIRLYMRSQSDQNPY 473 >gi|119385154|ref|YP_916210.1| GTP-binding protein EngA [Paracoccus denitrificans PD1222] gi|166225834|sp|A1B4S0|DER_PARDP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|119374921|gb|ABL70514.1| small GTP-binding protein [Paracoccus denitrificans PD1222] Length = 489 Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust. Identities = 205/477 (42%), Positives = 304/477 (63%), Gaps = 17/477 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +T+AIVG PNVGKSTLFNRLV K++A+V + PG+TRD G + + F +VD+AG+ Sbjct: 1 MSFTLAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDLREGAGRLGDLRFIVVDSAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 ++ S+ +M TE A++EA + LF+ID++ G+T D LR++ +I+ +NK Sbjct: 61 EIAEDDSLQGRMRRLTERAVDEADVCLFVIDARVGVTAADEYFADILRRRARHVILAANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + R + E Y+L E + ISAEH G +L+ + PL + Sbjct: 121 AEGRAGEAGAMEAYALGLGEPLRISAEHGEGMDDLYRALV----------PLAEAFEAQN 170 Query: 181 NEESPKENITSE-GKSSVKNI----SKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQS 235 +++P+ ++ E G ++ SKPL+IAV+GRPN GKSTLIN++LG +RLLTG ++ Sbjct: 171 VQQAPETDVAVEDGDDETEDWRPSESKPLQIAVIGRPNAGKSTLINKILGEDRLLTGPEA 230 Query: 236 GITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDA 295 GITRDS+S+S N+ P+ IFDTAGMRK +R+T+ +E+ +V +++VR E +VLLD Sbjct: 231 GITRDSISVSTNFMGTPVRIFDTAGMRKKARVTDKVEKLSVADGLRAVRFAEVVVVLLDV 290 Query: 296 TIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINT 355 IPFE+QDLRI D G AVV+A NKWD+ DK L++LR + LPQ+ + T Sbjct: 291 GIPFEQQDLRIADFAETEGRAVVVAANKWDLEEDKPEKLKELREAFERLLPQLKGAPLVT 350 Query: 356 ISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQ 415 +S RTG+GLD L ++L+ +++W RI T+ LN WL +PPP R RL+YITQ Sbjct: 351 VSARTGKGLDRLHNAILKAHEVWNRRIPTARLNQWLSTMTEAHPPPAPGGRRIRLRYITQ 410 Query: 416 IQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCF--QSSKNPYIKK 470 +++ PP+F++ T +K+P+SY+RYL+N LR +F + G PIR+ F Q +KNPY K Sbjct: 411 VKTRPPAFVVMATHTDKLPDSYQRYLVNGLRQDFDMPGTPIRLTFRDQGTKNPYKDK 467 >gi|319899216|ref|YP_004159309.1| GTP-binding protein [Bartonella clarridgeiae 73] gi|319403180|emb|CBI76739.1| GTP-binding protein [Bartonella clarridgeiae 73] Length = 478 Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust. Identities = 202/471 (42%), Positives = 301/471 (63%), Gaps = 4/471 (0%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M TIAIVG PNVGKSTLFNRLV +K+A+V N PG+TRDR A + + F+++DTAG+ Sbjct: 1 MSLTIAIVGRPNVGKSTLFNRLVGQKLALVDNQPGVTRDRRIHSAKLQDLHFDVIDTAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + N ++ +M QT++AI+EA LILF++D+K+GIT D S +RK PI++VSNK Sbjct: 61 EEADNHTLEGRMRSQTKIAIDEADLILFVLDAKSGITSSDLDFASLIRKSGKPIVLVSNK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN--- 177 +++ A Y+ +SL + ISAEH G S+L I P + EN Sbjct: 121 SESKAAIAGEYDAWSLRLGKPCSISAEHGQGLSDLRDAILDAIGADKVFDPKKKKENAYI 180 Query: 178 NKRNEESPKENITSEGKSS-VKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSG 236 S +N+ + + V + K +RIA+VGRPN GKSTLIN +LG NRLLTG ++G Sbjct: 181 TAAQVSSFSDNVDNTAEEDPVYDEKKTIRIAIVGRPNTGKSTLINSMLGQNRLLTGPEAG 240 Query: 237 ITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDAT 296 ITRDS+S+ W W N I++FDTAG+R+ S++ E LE+ +V S++++R E +++ DAT Sbjct: 241 ITRDSISVDWEWNNRRIKLFDTAGLRRKSKVQEKLEKLSVIDSLRAIRFAEVVVIVFDAT 300 Query: 297 IPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTI 356 FEKQDL+I D V G ++A NKWD++ ++ L L K + LPQ+ + + Sbjct: 301 ASFEKQDLQISDLVIREGRVPIIAFNKWDLIENRHEALNTLYEKCTRLLPQVHGLRAVPL 360 Query: 357 SGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQI 416 SG+ G+G+D LM ++ ++++W RI+T LN WL+ + PPP + R ++KYITQ+ Sbjct: 361 SGQYGQGIDKLMENITMMHRVWNRRISTGKLNRWLEMMIVNYPPPAVSGRRLKIKYITQV 420 Query: 417 QSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 ++ PP F+I C+ ++P+SY RYL NRLR F + G+PIR+ ++S NP+ Sbjct: 421 KTRPPEFVISCSRSEEMPQSYLRYLSNRLRDKFDMQGVPIRLSLRTSDNPF 471 >gi|170740822|ref|YP_001769477.1| GTP-binding protein EngA [Methylobacterium sp. 4-46] gi|168195096|gb|ACA17043.1| small GTP-binding protein [Methylobacterium sp. 4-46] Length = 446 Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust. Identities = 199/465 (42%), Positives = 289/465 (62%), Gaps = 26/465 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNRLV +K+A+V + PG+TRDR G+A + + F I+DTAG+ + Sbjct: 6 VAIVGRPNVGKSTLFNRLVGRKLALVDDRPGVTRDRREGEARLGHLRFTIIDTAGLEEAD 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 S+A +M QTE AI EA +LF++D++AG+ P D +R+ + P+I+++NK + Sbjct: 66 AESLAGRMRAQTEAAIAEADAVLFVVDARAGLLPADQPFAELVRRADKPVILLANKAEGG 125 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 YE + L + V +SAEH G +L + I + Sbjct: 126 AGLAGAYEAFGLGLGDPVPVSAEHGEGMGQLIDALADILPEAE----------------- 168 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 + KPLR+A+VGRPN GKSTLINR+LG +RLL G ++GITRDS+S+ Sbjct: 169 ---------DDDEEGEGKPLRVAIVGRPNAGKSTLINRMLGEDRLLVGPEAGITRDSISL 219 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 W W+ I++ DTAGMR+ +R+ + LE+ V +++VR E +VLLDATIPFEKQDL Sbjct: 220 DWEWRGRRIKLHDTAGMRRRARVDDKLEKLAVSDGLRAVRFAEVVVVLLDATIPFEKQDL 279 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 IVD V G A+V+ LNKWD+V+D+ LL++LR KA + LPQ+ I +SG GEG+ Sbjct: 280 TIVDLVEQEGRALVIGLNKWDLVADQPGLLKELREKAARLLPQVRGAPIVPLSGLAGEGI 339 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 D LM V+ + +W R+ T+ +N WL + NPPP + R +++Y TQ++S PP F Sbjct: 340 DRLMQGVVSASDVWNRRVPTARINQWLSEAVQANPPPAVSGRRIKIRYATQVKSRPPHFA 399 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIK 469 +F + +P+SY RYL+N LR F L G+PIR+ ++S+NP+ K Sbjct: 400 LFGNQLDALPKSYTRYLVNGLRDAFDLPGVPIRLSLRTSRNPFDK 444 >gi|163853441|ref|YP_001641484.1| small GTP-binding protein [Methylobacterium extorquens PA1] gi|218532301|ref|YP_002423117.1| GTP-binding protein EngA [Methylobacterium chloromethanicum CM4] gi|240140861|ref|YP_002965341.1| GTP-binding protein EngA, GTPase [Methylobacterium extorquens AM1] gi|254563370|ref|YP_003070465.1| GTP-binding protein EngA, GTPase [Methylobacterium extorquens DM4] gi|163665046|gb|ABY32413.1| small GTP-binding protein [Methylobacterium extorquens PA1] gi|218524604|gb|ACK85189.1| small GTP-binding protein [Methylobacterium chloromethanicum CM4] gi|240010838|gb|ACS42064.1| GTP-binding protein EngA, GTPase [Methylobacterium extorquens AM1] gi|254270648|emb|CAX26652.1| GTP-binding protein EngA, GTPase [Methylobacterium extorquens DM4] Length = 446 Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust. Identities = 194/466 (41%), Positives = 290/466 (62%), Gaps = 25/466 (5%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AIVG PNVGKSTLFNRLV +K+A+V + PG+TRDR G+ I V F ++DTAG+ + Sbjct: 5 TVAIVGRPNVGKSTLFNRLVGRKLALVDDRPGVTRDRREGEGFIGDVAFRVIDTAGLEEA 64 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 S+ +M QTE AI EA +LF+ID++AG+ P D +R+ P+I+++NK + Sbjct: 65 DADSLLGRMRAQTEAAILEADAVLFVIDARAGVLPSDRPFAELVRRSGCPVILIANKAEG 124 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 Y+ +SL + + SAEH G L + ++ + Sbjct: 125 GAGMAGAYDAFSLGLGDPIPFSAEHGEGLGSLQDALREVLPEPDE--------------- 169 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 + K LR+A+VGRPN GKSTLINR++G +RLL G ++GITRDS+S Sbjct: 170 ----------EDEDGEGGKGLRVAIVGRPNAGKSTLINRMIGEDRLLVGPEAGITRDSIS 219 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + W W+ I++ DTAGMR+ +RI + LE+ V +++VR E +VLLDATIPFEKQD Sbjct: 220 LDWEWRGRRIKLHDTAGMRRRARIDDKLEKLAVSDGLRAVRFAEVVVVLLDATIPFEKQD 279 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 L IVD V + G AVV+ LNKWD+V+D+ LL+ LR + LPQ+ + + ++SG G+G Sbjct: 280 LTIVDLVESEGRAVVIGLNKWDLVADQPGLLKTLREDCTRLLPQVRGVSVVSLSGLAGDG 339 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 +D LM +V++ +++W R++T+ +N+WL +NPPP + R +++Y TQ++S PP F Sbjct: 340 IDKLMQAVVDASEVWSRRVSTARINAWLTDALQRNPPPAVSGRRIKIRYATQVKSRPPHF 399 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIK 469 +F + +P+SY RYL+N LR F L G PIR+ +++KNP+ K Sbjct: 400 ALFGNQLDALPKSYTRYLVNGLREAFDLPGTPIRLSLRTTKNPFEK 445 >gi|83943023|ref|ZP_00955483.1| GTP-binding protein EngA [Sulfitobacter sp. EE-36] gi|83846031|gb|EAP83908.1| GTP-binding protein EngA [Sulfitobacter sp. EE-36] Length = 491 Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust. Identities = 203/469 (43%), Positives = 299/469 (63%), Gaps = 2/469 (0%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +T+AIVG PNVGKSTLFNRLV KK+A+V + PG+TRD G A + + F +VDTAG+ Sbjct: 1 MSFTLAIVGRPNVGKSTLFNRLVGKKLALVDDQPGVTRDLREGAARLADLRFTVVDTAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + + S+ +M TE A++ A + LF+ID++ G+TP D LRKK+ +I+ +NK Sbjct: 61 EEVTDDSLQGRMRRLTERAVDMADICLFMIDARVGVTPSDLVFADILRKKSAHVILAANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + + A E YSL E + +SAEH G ++L+S + I + E + Sbjct: 121 AEGKAADAGVIEAYSLGLGEPIRLSAEHGEGLNDLYSHLMPIADGFAERAQTDAPETDVD 180 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 E E E V +KPL++AVVGRPN GKSTLIN+++G +RLLTG ++GITRD Sbjct: 181 LTEEEAELGDEEAPVPVPTKTKPLQVAVVGRPNAGKSTLINQIMGEDRLLTGPEAGITRD 240 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 ++S+ +W + P+ IFDTAGMRK +++ E LE+ +V +++V+ E +VLLDA IPFE Sbjct: 241 AISLQTDWFDVPMRIFDTAGMRKRAKVQEKLEKLSVSDGLRAVKFAEVVVVLLDADIPFE 300 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 +QDLRI D G AVV+A+NKWD+ +DK L+DLR + LPQ+ + T+S +T Sbjct: 301 QQDLRIADLAEREGRAVVVAVNKWDLETDKQGKLKDLRESFERLLPQLKGAPLVTVSAKT 360 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G G+D L +++ ++W R+TT+ LN WL +PPP + +L+Y+TQ ++ P Sbjct: 361 GRGMDRLHNAIMRAYEVWNRRVTTAQLNRWLSGMMEAHPPPAPQGKRIKLRYMTQAKTRP 420 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCF--QSSKNPY 467 P F++ C+ P+K+PESY RYL+N LR++F + G PIR+ QS NPY Sbjct: 421 PGFVVMCSHPDKVPESYNRYLVNGLRLDFDMPGTPIRLWMRGQSDANPY 469 >gi|319406081|emb|CBI79711.1| GTP-binding protein [Bartonella sp. AR 15-3] Length = 477 Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust. Identities = 205/479 (42%), Positives = 303/479 (63%), Gaps = 15/479 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M TIAIVG PNVGKSTLFNRLV +K+A+V + PG+TRDR A + FN++DTAG+ Sbjct: 1 MSLTIAIVGRPNVGKSTLFNRLVGQKLALVDDQPGVTRDRRIHSAKFQDLHFNVIDTAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 N ++ +M QT++AI EA LILF++D+K+GITP D +S +RK PI++V+NK Sbjct: 61 EKSDNHTLEGRMRSQTKIAIAEADLILFVLDAKSGITPSDLDFSSLIRKSGKPIVLVANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVI---------FKIFKQKYPNHP 171 +++ A YE +SL E ISAEH G S+L I F + ++K + Sbjct: 121 SESKAAIGGEYEAWSLGLGEPCLISAEHGQGLSDLRDAIVAAIGTDKIFNLRREKEKVYT 180 Query: 172 LEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLT 231 + + K N E + SV + K +RIA+VGRPN GKSTLIN +LG +RLLT Sbjct: 181 AAQVSSIKDNVGDIAE------EDSVYDEKKTIRIAIVGRPNTGKSTLINSMLGQDRLLT 234 Query: 232 GSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIV 291 GS++GITRDSVS+ W W N I++FDTAG+R+ S++ E LE+ +V S++++R E ++ Sbjct: 235 GSEAGITRDSVSVDWEWNNRRIKLFDTAGLRRKSKVQEKLERLSVMDSLRAIRFAEVVVI 294 Query: 292 LLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDI 351 + DAT FEKQDL+I D V G ++A NKWD++ + L L K + LPQ+ + Sbjct: 295 VFDATASFEKQDLQIADLVIREGRVPIIAFNKWDLIENHHETLTTLYEKCTRLLPQVRGL 354 Query: 352 YINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLK 411 +SG+ G+G++ LM ++ I+++W RI+T LN WL+ + PPP + ++K Sbjct: 355 RAIPLSGQYGQGINKLMENITMIHRVWNRRISTGKLNRWLETMLVNYPPPAVSGHRLKIK 414 Query: 412 YITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 YITQ+++ PP F+I C+ ++P+SY RYL N LR F + G+PIR+ ++S NP+ K+ Sbjct: 415 YITQVKTRPPGFVISCSRSKEMPQSYLRYLSNGLRDKFDMQGVPIRLSLRTSDNPFAKR 473 >gi|170750287|ref|YP_001756547.1| small GTP-binding protein [Methylobacterium radiotolerans JCM 2831] gi|170656809|gb|ACB25864.1| small GTP-binding protein [Methylobacterium radiotolerans JCM 2831] Length = 448 Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust. Identities = 196/466 (42%), Positives = 289/466 (62%), Gaps = 23/466 (4%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AIVG PNVGKSTLFNRLV KK+A+V + PG+TRDR G G+ F ++DTAG+ + Sbjct: 5 TVAIVGRPNVGKSTLFNRLVGKKLALVDDRPGVTRDRREGDVAFGGLEFRVIDTAGLEEA 64 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 S+ +M QTE AI A ++LF+ID++AG+ P D +R+ P+I+++NK + Sbjct: 65 DAASLTGRMRMQTEAAILAADVVLFVIDARAGVLPADQPFAELVRRAGCPVILIANKAEG 124 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 YE ++L + + SAEH G ELH + Q+ + + + Sbjct: 125 GAGLAGAYEAFTLGLGDPIPFSAEHGEGLGELHEALKGALPQRDADEDPDDAPGGR---- 180 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 L++A+VGRPN GKSTLINR+LG +RLL G ++GITRDS+S Sbjct: 181 -------------------ALKVAIVGRPNAGKSTLINRMLGEDRLLVGPEAGITRDSIS 221 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + W W+ I++ DTAGMR+ +RI + LE+ V +++VR E +VLLDATIPFEKQD Sbjct: 222 LDWEWRGRRIKLHDTAGMRRRARIDDKLEKLAVSDGLRAVRFAEVVVVLLDATIPFEKQD 281 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 L IVD V + G A+V+ LNKWD+V+D+ LL+ LR + LPQ+ + + +SG G+G Sbjct: 282 LTIVDLVESEGRALVIGLNKWDLVADQPGLLKQLREDCTRLLPQVRGVAVVPLSGLAGDG 341 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 +D LM +V++ ++W R++TS +N WL + +NPPP + R +++Y TQ++S PP F Sbjct: 342 VDKLMQAVVQAAEVWDRRVSTSRINDWLNEATSRNPPPAVSGRRIKIRYATQVKSRPPHF 401 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIK 469 +F N +P+SY RYL+N LR F L G PIR+ ++S+NP+ K Sbjct: 402 ALFGNQLNALPKSYTRYLVNGLREAFDLPGTPIRLSLRTSQNPFDK 447 >gi|86749568|ref|YP_486064.1| GTP-binding protein EngA [Rhodopseudomonas palustris HaA2] gi|123004191|sp|Q2IXA7|DER_RHOP2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|86572596|gb|ABD07153.1| GTP-binding protein [Rhodopseudomonas palustris HaA2] Length = 459 Score = 409 bits (1050), Expect = e-112, Method: Compositional matrix adjust. Identities = 197/470 (41%), Positives = 294/470 (62%), Gaps = 16/470 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +T AI+G PNVGKSTLFNRLV +K+A+V + PG+TRDR G+ + + F I+DTAG+ Sbjct: 1 MSFTFAIIGRPNVGKSTLFNRLVGQKLALVDDTPGVTRDRREGEGRLGDLEFTIIDTAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 +G S+ +M QTE AI A ++F+ D++AG+TP D A F R+ N P+++V+NK Sbjct: 61 DEGAKGSLTARMQQQTETAIELADALMFVFDARAGLTPNDRAFADFARRANKPVVLVANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + + E Y+L + V+ISAEH G SEL+ + I M E Sbjct: 121 SEGKAGGIGAMESYALGLGDPVQISAEHGEGLSELYDALRAI-----------MPEPEVE 169 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 +++ + +T E S +P+R+A+VGRPN GKST INRLLG +RLLT ++G TRD Sbjct: 170 DDDEEIDGLTEEDFSK-----RPIRVAIVGRPNAGKSTFINRLLGEDRLLTSPEAGTTRD 224 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+++ NWK IFDTAG+R+ SRI E LE+ +V ++++VR E ++++D+ FE Sbjct: 225 SIAVEVNWKGREFRIFDTAGLRRRSRIEEKLEKLSVADALRAVRFAEVVVLMMDSQNRFE 284 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 +QDLRI D + G A+V+A+NKWD+V + + LR A LPQ+ + I SG Sbjct: 285 EQDLRIADLIEREGRALVIAVNKWDLVEQQGGQIAQLRADADHWLPQVRGVPIVATSGML 344 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 GEG+D L+ ++ + +W TR++T+ LN W ++ QNPPP + R +L Y+TQ ++ P Sbjct: 345 GEGVDRLIDAIQDAYAVWNTRVSTAALNRWFEQAVAQNPPPAVAGRRLKLNYVTQTKARP 404 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 PSF++FC+ + +PESY RYL+N LR F L G P+R+ + NP+ K Sbjct: 405 PSFVVFCSRADAVPESYLRYLVNSLRGVFKLPGTPVRITLREKANPFAHK 454 >gi|316933671|ref|YP_004108653.1| ribosome-associated GTPase EngA [Rhodopseudomonas palustris DX-1] gi|315601385|gb|ADU43920.1| ribosome-associated GTPase EngA [Rhodopseudomonas palustris DX-1] Length = 458 Score = 408 bits (1049), Expect = e-112, Method: Compositional matrix adjust. Identities = 197/470 (41%), Positives = 293/470 (62%), Gaps = 17/470 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +T+AI+G PNVGKSTLFNRLV +K+A+V + PG+TRDR G+ + + F ++DTAG+ Sbjct: 1 MSFTLAIIGRPNVGKSTLFNRLVGQKLALVDDAPGVTRDRREGEGRLGDLTFTLIDTAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 +G S+ +M +QTE AI A +LF+ID++AG+TP D A F R+ N P+++V+NK Sbjct: 61 DEGPKGSLTARMQEQTETAIEHADALLFVIDARAGLTPNDRAFADFARRANKPVVLVANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + + + E Y+L + V+ISAEH G EL+ + P P + E + Sbjct: 121 SEGKHGEIGAMESYALGLGDPVQISAEHGEGLGELYDAL-------RPLMPEPVDEEDDD 173 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 + + +E I + +P+R+A+VGRPN GKST INRLLG RLLT ++G TRD Sbjct: 174 DADHSEEAIAT----------RPIRVAIVGRPNAGKSTFINRLLGEERLLTSPEAGTTRD 223 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+++ WK +FDTAG+R+ SRI E LE+ +V ++++VR E ++++DA FE Sbjct: 224 SIAVEVQWKGREFRVFDTAGLRRRSRIEEKLEKLSVADALRAVRFAEVVVLMMDAQNRFE 283 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 +QDLRI D V G A+V+A+NKWD++ + + LR A LPQI + I SG Sbjct: 284 EQDLRIADLVEREGRALVIAVNKWDLMERQGGQIAQLRADADHWLPQIKGVPIVATSGML 343 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 GEG+D LM +V + +W R+ T+ LN W ++ QNPPP + R +L Y+TQ ++ P Sbjct: 344 GEGVDRLMQAVQDAYAVWNRRVPTAALNRWFEQATAQNPPPAVSGRRLKLNYVTQTKARP 403 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 PSF++FC+ + +PESY RYL+N LR F L G P+R+ + NP+ K Sbjct: 404 PSFVVFCSRADAVPESYLRYLVNSLRGAFELPGTPVRITLREKANPFAHK 453 >gi|126732584|ref|ZP_01748381.1| GTP-binding protein EngA [Sagittula stellata E-37] gi|126706868|gb|EBA05937.1| GTP-binding protein EngA [Sagittula stellata E-37] Length = 488 Score = 408 bits (1049), Expect = e-112, Method: Compositional matrix adjust. Identities = 200/475 (42%), Positives = 300/475 (63%), Gaps = 18/475 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +++AIVG PNVGKSTLFNRLV K++A+V + PG+TRD G+A + + F ++DTAG+ Sbjct: 1 MSFSLAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDLREGEAKLGDLRFTVIDTAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + + S+ +M TE A++ A + LFLID++AG+ P DH LRK+ +II +NK Sbjct: 61 ENANDDSLPARMRRLTERAVDMADVCLFLIDARAGLLPDDHVFAEILRKRAKHVIIAANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + A +E + L E + +SAEH G +L+SV+ PL + R Sbjct: 121 AEGSAADAGVFEAFELGLGEPLRLSAEHGEGMPDLYSVLL----------PLAEGFDAAR 170 Query: 181 NEESPKENITSEGKSS------VKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQ 234 ++P+ ++ + + +++PL+IAVVGRPN GKSTLIN ++G +RLLTG + Sbjct: 171 AGDTPETDVAVSDEDEDDDSVPMPTLARPLQIAVVGRPNAGKSTLINHIIGEDRLLTGPE 230 Query: 235 SGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLD 294 +GITRD++S++ W P+ IFDTAGMR+ S++ E LE+ +V +++V+ E +VLLD Sbjct: 231 AGITRDAISLTHEWGGVPMRIFDTAGMRRRSKVQEKLEKLSVSDGIRAVKFAEVVVVLLD 290 Query: 295 ATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYIN 354 A IPFE QDL+I D G AVV+A+NKWD+ +K L+ LR + LPQ+ + Sbjct: 291 AAIPFETQDLKIADLAEREGRAVVVAVNKWDIEGEKQEKLKWLREQFEHVLPQLRGAPLV 350 Query: 355 TISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYIT 414 T+S RTG+GLD L +V++ +W R++T LN WL+ ++PPP R +L+Y+T Sbjct: 351 TVSARTGKGLDKLQEAVMKAYTVWNRRVSTGQLNRWLEAMIARHPPPAPQGRRIKLRYMT 410 Query: 415 QIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIR--MCFQSSKNPY 467 Q ++ PP F++ C+ P+K+PESY RYL+N LR +F + G PIR M Q KNPY Sbjct: 411 QAKTRPPGFVVMCSHPDKLPESYSRYLVNGLREDFDMPGTPIRLHMRGQGDKNPY 465 >gi|90105796|gb|ABD87833.1| Small GTP-binding protein domain [Rhodopseudomonas palustris BisB18] Length = 465 Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust. Identities = 193/470 (41%), Positives = 298/470 (63%), Gaps = 15/470 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +T AI+G PNVGKSTLFNRLV +K+A+V + PG+TRDR GQ + + F I+DTAG+ Sbjct: 6 MSFTFAIIGRPNVGKSTLFNRLVGQKLALVDDTPGVTRDRREGQGKLGDLEFTIIDTAGL 65 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 +G S+ +M +QTE AI A ++F+ID++AG+TP D A F R+ N P+I+V+NK Sbjct: 66 DEGAKGSLVARMQEQTEAAIALADALMFVIDARAGLTPNDRAFADFARRANKPVILVANK 125 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + R + E Y+L + ++ISAEH G S+L+ + + + P+ Sbjct: 126 SEGRHGEIGAMESYALGLGDPIQISAEHGEGLSDLYDALRAVMPE--PDVLF-------- 175 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 +E+ E ++ E S+ +P+R+A+VGRPN GKST+IN LLG RLLT +++G TRD Sbjct: 176 DEDDDVEGVSEEDFST-----RPIRVAIVGRPNAGKSTMINHLLGEERLLTSAEAGTTRD 230 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+S+ ++K IFDTAG+R+ SRI E LE+ +V +++++R E ++++D+ FE Sbjct: 231 SISVEVDYKGRQFRIFDTAGLRRRSRIEEKLEKLSVADALRAIRFAEVVVLMMDSQNKFE 290 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 +QDLRI D + G A+V+A+NKWD++ + +L+ LR LPQ+ + I +SG Sbjct: 291 EQDLRIADLIEREGRALVIAVNKWDLMGKQASLVAGLRADVDHLLPQVKGVPIVAVSGLM 350 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 GEG+D LM ++ + +W R+ T+ LN W ++ NPPP + R +L Y+TQ ++ P Sbjct: 351 GEGIDRLMKAIEDSYAVWNRRVPTASLNRWFEQAVETNPPPAVSGRRLKLNYVTQAKARP 410 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 PSF++FC+ + +PESY RYL+N LR F L G P+R+ + NP+ K Sbjct: 411 PSFIVFCSRADAVPESYLRYLVNSLRAFFDLPGTPVRITLREKANPFAHK 460 >gi|83954198|ref|ZP_00962918.1| GTP-binding protein EngA [Sulfitobacter sp. NAS-14.1] gi|83841235|gb|EAP80405.1| GTP-binding protein EngA [Sulfitobacter sp. NAS-14.1] Length = 491 Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust. Identities = 202/469 (43%), Positives = 299/469 (63%), Gaps = 2/469 (0%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +T+AIVG PNVGKSTLFNRLV KK+A+V + PG+TRD G A + + F +VDTAG+ Sbjct: 1 MSFTLAIVGRPNVGKSTLFNRLVGKKLALVDDQPGVTRDLREGAARLADLRFTVVDTAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + + S+ +M TE A++ A + LF+ID++ G+TP D LRKK+ +I+ +NK Sbjct: 61 EEVTDDSLQGRMRRLTERAVDMADICLFMIDARVGVTPSDLVFADILRKKSAHVILAANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + + A E YSL E + +SAEH G ++L++ + I + E + Sbjct: 121 AEGKAADAGVIEAYSLGLGEPIRLSAEHGEGLNDLYTHLMPIADGFAERAQTDAPETDVD 180 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 E E E V +KPL++AVVGRPN GKSTLIN+++G +RLLTG ++GITRD Sbjct: 181 LTEEEAELGDEEAPMPVPTKTKPLQVAVVGRPNAGKSTLINQIMGEDRLLTGPEAGITRD 240 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 ++S+ +W + P+ IFDTAGMRK +++ E LE+ +V +++V+ E +VLLDA IPFE Sbjct: 241 AISLQTDWFDVPMRIFDTAGMRKRAKVQEKLEKLSVSDGLRAVKFAEVVVVLLDADIPFE 300 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 +QDLRI D G AVV+A+NKWD+ +DK L+DLR + LPQ+ + T+S +T Sbjct: 301 QQDLRIADLAEREGRAVVVAVNKWDLETDKQGKLKDLRESFERLLPQLKGAPLVTVSAKT 360 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G G+D L +++ ++W R+TT+ LN WL +PPP + +L+Y+TQ ++ P Sbjct: 361 GRGMDRLHNAIMRAYEVWNRRVTTAQLNRWLSGMIEAHPPPAPQGKRIKLRYMTQAKTRP 420 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCF--QSSKNPY 467 P F++ C+ P+K+PESY RYL+N LR++F + G PIR+ QS NPY Sbjct: 421 PGFVVMCSHPDKVPESYNRYLVNGLRLDFDMPGTPIRLWMRGQSDANPY 469 >gi|162136030|ref|YP_532152.2| GTP-binding protein EngA [Rhodopseudomonas palustris BisB18] Length = 460 Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust. Identities = 193/470 (41%), Positives = 298/470 (63%), Gaps = 15/470 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +T AI+G PNVGKSTLFNRLV +K+A+V + PG+TRDR GQ + + F I+DTAG+ Sbjct: 1 MSFTFAIIGRPNVGKSTLFNRLVGQKLALVDDTPGVTRDRREGQGKLGDLEFTIIDTAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 +G S+ +M +QTE AI A ++F+ID++AG+TP D A F R+ N P+I+V+NK Sbjct: 61 DEGAKGSLVARMQEQTEAAIALADALMFVIDARAGLTPNDRAFADFARRANKPVILVANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + R + E Y+L + ++ISAEH G S+L+ + + + P+ Sbjct: 121 SEGRHGEIGAMESYALGLGDPIQISAEHGEGLSDLYDALRAVMPE--PDVLF-------- 170 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 +E+ E ++ E S+ +P+R+A+VGRPN GKST+IN LLG RLLT +++G TRD Sbjct: 171 DEDDDVEGVSEEDFST-----RPIRVAIVGRPNAGKSTMINHLLGEERLLTSAEAGTTRD 225 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+S+ ++K IFDTAG+R+ SRI E LE+ +V +++++R E ++++D+ FE Sbjct: 226 SISVEVDYKGRQFRIFDTAGLRRRSRIEEKLEKLSVADALRAIRFAEVVVLMMDSQNKFE 285 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 +QDLRI D + G A+V+A+NKWD++ + +L+ LR LPQ+ + I +SG Sbjct: 286 EQDLRIADLIEREGRALVIAVNKWDLMGKQASLVAGLRADVDHLLPQVKGVPIVAVSGLM 345 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 GEG+D LM ++ + +W R+ T+ LN W ++ NPPP + R +L Y+TQ ++ P Sbjct: 346 GEGIDRLMKAIEDSYAVWNRRVPTASLNRWFEQAVETNPPPAVSGRRLKLNYVTQAKARP 405 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 PSF++FC+ + +PESY RYL+N LR F L G P+R+ + NP+ K Sbjct: 406 PSFIVFCSRADAVPESYLRYLVNSLRAFFDLPGTPVRITLREKANPFAHK 455 >gi|163743210|ref|ZP_02150592.1| GTP-binding protein EngA [Phaeobacter gallaeciensis 2.10] gi|161383627|gb|EDQ08014.1| GTP-binding protein EngA [Phaeobacter gallaeciensis 2.10] Length = 508 Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust. Identities = 200/479 (41%), Positives = 304/479 (63%), Gaps = 19/479 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +T+AIVG PNVGKSTLFNRLV K++A+V + PG+TRD G+A + + F +VDTAG+ Sbjct: 23 MSFTLAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDLREGEARLGDLRFTVVDTAGL 82 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 D + S+ +M TE A++ A + LF+ID++ G+TP D LRKK+ +I+ +NK Sbjct: 83 EDATDNSLEGRMRRLTERAVDMADVCLFMIDARVGVTPIDQMFAEILRKKSAHVILAANK 142 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + A + + L E + +S EH G ++L+S + PL + Sbjct: 143 AEGNAADAGVLDAWGLGLGEPIRLSGEHGEGLNDLYSQLM----------PLADEFEERA 192 Query: 181 NEESPKENITSEGKSSVKNIS-------KPLRIAVVGRPNVGKSTLINRLLGYNRLLTGS 233 ++SP+ ++ + +++S KPL++AVVGRPN GKSTLIN++LG +RLLTG Sbjct: 193 KDDSPEIDVALDEDDDEEDLSVPMPTRNKPLQVAVVGRPNAGKSTLINKILGEDRLLTGP 252 Query: 234 QSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLL 293 ++GITRD++S+ +W++ P+ IFDTAGMRK +++ E LE+ +V +++V+ E +VLL Sbjct: 253 EAGITRDAISLQIDWQDVPMRIFDTAGMRKKAKVQEKLEKLSVSDGLRAVKFAEVVVVLL 312 Query: 294 DATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYI 353 DA IPFE+QDLRI D G AVV+A+NKWD+ +K L++L+ + LPQ+ + Sbjct: 313 DAAIPFEQQDLRIADLAEREGRAVVVAVNKWDIEDEKQEKLRNLKEAFDRLLPQLRGAPL 372 Query: 354 NTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYI 413 T+S +TG+GLD L +++ +W RI T+ LN WL Q+PPP + +L+Y+ Sbjct: 373 ITVSAKTGKGLDRLHAAIMRAYDVWNRRIPTAALNRWLTGMLEQHPPPAPQGKRIKLRYM 432 Query: 414 TQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCF--QSSKNPYIKK 470 TQ ++ PP F++ C+ P+K+PESY RYL+N LR +F + G PIR+ QS KNPY K Sbjct: 433 TQAKTRPPGFVVMCSHPDKMPESYNRYLVNGLRQDFDMPGSPIRLTLRSQSDKNPYKGK 491 >gi|295689707|ref|YP_003593400.1| ribosome-associated GTPase EngA [Caulobacter segnis ATCC 21756] gi|295431610|gb|ADG10782.1| ribosome-associated GTPase EngA [Caulobacter segnis ATCC 21756] Length = 588 Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust. Identities = 190/467 (40%), Positives = 285/467 (61%), Gaps = 25/467 (5%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +AIVG PNVGKSTLFNRL KK+A+V + PG+TRDR Y + + ++DTAG Sbjct: 1 MPLKLAIVGRPNVGKSTLFNRLAGKKLAIVDDQPGVTRDRRYADGRLGDLDLQLIDTAGF 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 D + S+ +M QTELAI EA L LF+ D++ G+TP D + LR++ P+II +NK Sbjct: 61 EDVADESLEARMRAQTELAIEEADLSLFIYDAREGVTPLDEVFATLLRRRGKPVIIAANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + + Q E Y L E + IS EH G +EL++ + P EM + Sbjct: 121 AEGKAGQSGIGEAYKLGLGEPIPISGEHGEGMAELYAAMLAAV-------PEEMYSGDDE 173 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 +E+ KP+R+A+VGRPN GKSTLINRL+G RLLTG ++GITRD Sbjct: 174 DED------------------KPIRLAIVGRPNAGKSTLINRLIGEQRLLTGPEAGITRD 215 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+S+ W W + + + DTAG+RK +++ E LE+ + + +++++ E ++++DAT PFE Sbjct: 216 SISVDWVWGDKKVRLVDTAGLRKKAKVQEKLEKLSTQDTIRAITFAEVVVLVMDATHPFE 275 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 QDL+I D G A+V L KWD++ D+ L R A + LPQ+ + +SG T Sbjct: 276 IQDLQIADLTEREGRALVFVLAKWDLIEDQAGTLAAFREHAERMLPQVRGAPVVALSGET 335 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G G++ LM +VL+I+K W T++ T LN WLQ ++PPP + R + KY+ Q ++ P Sbjct: 336 GSGVNKLMPAVLKIHKDWSTKVKTRDLNDWLQMAMQRHPPPAVSGRRVKPKYMAQTKARP 395 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 P+F++F + +++P+ Y+RYLIN LR +F L G+P+R+ +S NPY Sbjct: 396 PTFVLFSSRADQMPDHYRRYLINSLRESFDLPGVPLRITIKSGANPY 442 >gi|163736771|ref|ZP_02144190.1| Small GTP-binding protein domain [Phaeobacter gallaeciensis BS107] gi|161390641|gb|EDQ14991.1| Small GTP-binding protein domain [Phaeobacter gallaeciensis BS107] Length = 508 Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust. Identities = 199/479 (41%), Positives = 304/479 (63%), Gaps = 19/479 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +T+AIVG PNVGKSTLFNRLV K++A+V + PG+TRD G+A + + F +VDTAG+ Sbjct: 23 MSFTLAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDLREGEARLGDLRFTVVDTAGL 82 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 D + S+ +M TE A++ A + LF+ID++ G+TP D LRKK+ +I+ +NK Sbjct: 83 EDATDNSLEGRMRRLTERAVDMADVCLFMIDARVGVTPIDQMFAEILRKKSAHVILAANK 142 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + A + + L E + +S EH G ++L+S + PL + Sbjct: 143 AEGNAADAGVLDAWGLGLGEPIRLSGEHGEGLNDLYSQLM----------PLADEFEERA 192 Query: 181 NEESPKENITSEGKSSVKNIS-------KPLRIAVVGRPNVGKSTLINRLLGYNRLLTGS 233 ++SP+ ++ + +++S KPL++AVVGRPN GKSTLIN++LG +RLLTG Sbjct: 193 KDDSPEIDVALDEDDDEEDLSVPMPTRNKPLQVAVVGRPNAGKSTLINKILGEDRLLTGP 252 Query: 234 QSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLL 293 ++GITRD++S+ +W++ P+ IFDTAGMRK +++ E LE+ +V +++V+ E +VLL Sbjct: 253 EAGITRDAISLQIDWQDVPMRIFDTAGMRKKAKVQEKLEKLSVSDGLRAVKFAEVVVVLL 312 Query: 294 DATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYI 353 DA IPFE+QDLRI D G AVV+A+NKWD+ +K L++L+ + LPQ+ + Sbjct: 313 DAAIPFEQQDLRIADLAEREGRAVVVAVNKWDIEDEKQEKLRNLKEAFDRLLPQLRGAPL 372 Query: 354 NTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYI 413 T+S +TG+GLD L +++ +W R+ T+ LN WL Q+PPP + +L+Y+ Sbjct: 373 ITVSAKTGKGLDRLHAAIMRAYDVWNRRVPTAALNRWLTGMLEQHPPPAPQGKRIKLRYM 432 Query: 414 TQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCF--QSSKNPYIKK 470 TQ ++ PP F++ C+ P+K+PESY RYL+N LR +F + G PIR+ QS KNPY K Sbjct: 433 TQAKTRPPGFVVMCSHPDKMPESYNRYLVNGLRQDFDMPGSPIRLTLRSQSDKNPYKGK 491 >gi|149204177|ref|ZP_01881145.1| GTP-binding protein EngA [Roseovarius sp. TM1035] gi|149142619|gb|EDM30664.1| GTP-binding protein EngA [Roseovarius sp. TM1035] Length = 488 Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust. Identities = 199/480 (41%), Positives = 305/480 (63%), Gaps = 20/480 (4%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +++AIVG PNVGKSTLFNRLV K++A+V N PG+TRD G A + + F ++DTAG+ Sbjct: 1 MTFSVAIVGRPNVGKSTLFNRLVGKRLALVDNQPGVTRDLREGAARLGDLRFTVIDTAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 D + S+ +M TE A++ A + LF+ID++ G+TP D ++ LRK++ +I+ +NK Sbjct: 61 EDATDESLQGRMRKLTERAVDMADICLFVIDARTGVTPTDESLAEILRKRSAHVILAANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + A E + L E + +SAEH G ++L+S + PL + Sbjct: 121 AEGSAADAGVIEAWGLGLGEPIRMSAEHGEGLNDLYSQLM----------PLADAFEARA 170 Query: 181 NEESPKENITSEGKSSVKNI--------SKPLRIAVVGRPNVGKSTLINRLLGYNRLLTG 232 E+P+ +++ + ++P+++AVVGRPN GKSTLIN++LG RLLTG Sbjct: 171 AAEAPEVDVSLDEDIEDDEDVSYRKPTEARPMQVAVVGRPNAGKSTLINKILGEERLLTG 230 Query: 233 SQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVL 292 ++GITRD++S+ +W P+ IFDTAGMRK +++ + LE+ +V +++V+ E +VL Sbjct: 231 PEAGITRDAISLRIDWDGMPVRIFDTAGMRKKAKVQDKLEKLSVSDGLRAVKFAEVVVVL 290 Query: 293 LDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIY 352 LDA IPFE+QDLRI D G AVV+A+NKWDM DK + +++LR + LPQ+ Sbjct: 291 LDAAIPFEQQDLRIADLAEREGRAVVVAINKWDMEPDKSDKIRELREAFERLLPQLRGAP 350 Query: 353 INTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKY 412 + T+S +TG+GLD L +V + +++W R+TT+ LN WL Q+PPP R +L+Y Sbjct: 351 LVTVSAKTGKGLDRLRDAVAKAHEVWNRRVTTAQLNRWLIGMLEQHPPPAPGGRRVKLRY 410 Query: 413 ITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCF--QSSKNPYIKK 470 +TQ ++ PP F++ C+ P+K+PESY RYL+N LR +F + G PIR+ F Q+ +NPY K Sbjct: 411 MTQAKTRPPGFVVMCSHPDKLPESYSRYLVNGLRADFDMPGTPIRLYFRSQADRNPYKSK 470 >gi|319404573|emb|CBI78179.1| GTP-binding protein [Bartonella rochalimae ATCC BAA-1498] Length = 477 Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust. Identities = 206/484 (42%), Positives = 306/484 (63%), Gaps = 25/484 (5%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M TIAIVG PNVGKSTLFNRLV +K+A+V + PG+TRDR A + + F+++DTAG+ Sbjct: 1 MSLTIAIVGRPNVGKSTLFNRLVGQKLALVDDQPGVTRDRRIHSAKLQDLHFDVIDTAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + N ++ +M QT++AI+EA LILF++D+K+GITP D +S +RK PI++VSNK Sbjct: 61 EEADNHTLEGRMRAQTKIAIDEADLILFVLDAKSGITPSDLDFSSLIRKSGKPIVLVSNK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF------KIF------KQKYP 168 +++ A YE +SL E ISAEH G S+L I K+F ++ Y Sbjct: 121 SESKTAIAGEYEAWSLGLGEPCPISAEHGHGLSDLRDAIVAAIGADKVFNLRQEKEKTYT 180 Query: 169 NHPLEMIENNKRN--EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGY 226 + I +N N EE P V + K +RIAVVGRPN GKSTLIN +L Sbjct: 181 TAQISSISDNIDNTVEEDP-----------VYDEKKTIRIAVVGRPNTGKSTLINSMLKQ 229 Query: 227 NRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTC 286 +RLLTG ++GITRDS+S+ W W N I++FDTAG+R+ S++ E LE+ +V S++++R Sbjct: 230 DRLLTGPEAGITRDSISVDWEWNNRRIKLFDTAGLRRKSKVQEKLERLSVVDSLRAIRFA 289 Query: 287 ETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLP 346 E +++ DAT FEKQDL+I D V G ++A NKWD++ ++ L L K + LP Sbjct: 290 EVVVIVFDATTSFEKQDLQISDLVIREGRVPIIAFNKWDLIENRHEALNTLYEKCTRLLP 349 Query: 347 QIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNR 406 Q+ + +SG G+G++ LM ++ ++++W RI+T LN WL+ + PPP + R Sbjct: 350 QVRGLRAVPLSGLYGQGINKLMENITMMHRVWNRRISTGKLNRWLETMIINYPPPAVSGR 409 Query: 407 YNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNP 466 ++KYITQ+++ PP F+I C+ ++P+SY RYL N LR F + G+PIR+ ++S NP Sbjct: 410 RLKVKYITQVKTRPPGFVISCSKSEEMPQSYLRYLSNGLRDKFDMQGVPIRLSLRTSDNP 469 Query: 467 YIKK 470 + K+ Sbjct: 470 FAKQ 473 >gi|163746867|ref|ZP_02154224.1| GTP-binding protein EngA [Oceanibulbus indolifex HEL-45] gi|161379981|gb|EDQ04393.1| GTP-binding protein EngA [Oceanibulbus indolifex HEL-45] Length = 493 Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust. Identities = 199/475 (41%), Positives = 307/475 (64%), Gaps = 11/475 (2%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +T+AIVG PNVGKSTLFNRLV K++A+V + PG+TRD G A + + F ++DTAG+ Sbjct: 1 MSFTLAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDLREGAAKLADLRFTVIDTAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + + S+ +M TE A++ A + LF+ID++ G+TP D LRKK+ +I+ NK Sbjct: 61 EEVTDDSLQGRMRRLTERAVDMADICLFMIDARVGVTPSDMVFAEILRKKSAHVILAGNK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + + A E YSL E + +SAEH G ++L+S++ + + Y + ++ + + Sbjct: 121 AEGKAADAGMIEAYSLGLGEPIRLSAEHGEGLNDLYSMLMPLADE-YEDRAVQ--DAPET 177 Query: 181 NEESPKENITSEGKS-SVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITR 239 + + P+++ E ++ + +KPL++AVVGRPN GKSTLIN++LG +RLLTG ++GITR Sbjct: 178 DVDLPEDDADLEAETVPMPTRAKPLQVAVVGRPNAGKSTLINQILGEDRLLTGPEAGITR 237 Query: 240 DSVSISWNWKNH-----PIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLD 294 D++S+ W P+ IFDTAGMRK ++I E LE+ +V +++V+ E +VLLD Sbjct: 238 DAISLMTEWAGPDGDPVPMRIFDTAGMRKKAKIQEKLEKLSVSDGLRAVKFAEVVVVLLD 297 Query: 295 ATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYIN 354 A IPFE+QDLRI D G AVV+A+NKWD+ ++ + L++L+ + LPQ+ + Sbjct: 298 AEIPFEQQDLRIADLAEREGRAVVVAVNKWDIEENRQDKLRELKESFERLLPQLRGAPLI 357 Query: 355 TISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYIT 414 T+S +TG GLD L +++ ++W RITT+ LN WL +PPP + +L+Y+T Sbjct: 358 TVSAKTGRGLDRLQAAIMRAYEVWNRRITTAQLNRWLSGMMEAHPPPAPQGKRIKLRYMT 417 Query: 415 QIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIR--MCFQSSKNPY 467 Q ++ PP F++ C+ P+K+PESY RYL+N LR++F + G PIR M QS NPY Sbjct: 418 QAKTRPPGFVVMCSHPDKVPESYSRYLVNGLRVDFDMPGTPIRLWMRGQSDANPY 472 >gi|92117234|ref|YP_576963.1| GTP-binding protein EngA [Nitrobacter hamburgensis X14] gi|122418012|sp|Q1QMP4|DER_NITHX RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|91800128|gb|ABE62503.1| Small GTP-binding protein domain [Nitrobacter hamburgensis X14] Length = 460 Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust. Identities = 194/470 (41%), Positives = 291/470 (61%), Gaps = 15/470 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +TIAI+G PNVGKSTLFNRLV +K+A+V + PG+TRDR GQA + + F ++DTAG+ Sbjct: 1 MSFTIAIIGRPNVGKSTLFNRLVGQKLALVDDKPGVTRDRREGQARLGDLDFTVIDTAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 +G S+ +M +QTE AI A ++F+ D++AG+TP D + F R+ N P+++V+NK Sbjct: 61 DEGPRGSLTARMQEQTETAIAAADALMFVFDARAGLTPTDRSFADFARRANKPVVLVANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + R + E Y+L + V +SAEH G S+L+ + + + Sbjct: 121 SEGRHGEAGALESYALGLGDPVGVSAEHGEGMSDLYDALRGVMPEPTEEA---------- 170 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 +E + S +P+R+A+VGRPN GKSTLIN LLG RLLT ++G TRD Sbjct: 171 -----EEFDDDDIIESEDISQRPIRVAIVGRPNAGKSTLINYLLGEERLLTSPEAGTTRD 225 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+S+ NW+ IFDTAG+R+ SRI E LE+ +V ++++ R E ++++DA FE Sbjct: 226 SISVELNWQGRDFRIFDTAGLRRRSRIEEKLEKLSVADTLRAARFAEVVVLMMDAQNRFE 285 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 +QDLRI D + G A+V+A+NKWD++ + +L+ LRT A LPQ+ + I +SG Sbjct: 286 EQDLRIADLIEREGRALVIAVNKWDLMGRQSSLIAALRTDADHLLPQVKGMPIVAVSGLM 345 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 GEG+D LM ++ + +W R+ T+ LN W ++ NPPP + R +L Y+TQ ++ P Sbjct: 346 GEGVDRLMTAIQDAYAIWNRRVPTAALNRWFEQAVDANPPPAVSGRRLKLNYVTQAKARP 405 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 PSF++FC+ + +PESY RYL+N LR F L G PIR+ + NP+ K Sbjct: 406 PSFIVFCSRADAVPESYLRYLVNSLRGFFDLPGTPIRITLREKANPFAHK 455 >gi|126739021|ref|ZP_01754715.1| GTP-binding protein EngA [Roseobacter sp. SK209-2-6] gi|126719638|gb|EBA16346.1| GTP-binding protein EngA [Roseobacter sp. SK209-2-6] Length = 489 Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust. Identities = 201/475 (42%), Positives = 303/475 (63%), Gaps = 8/475 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +T+AIVG PNVGKSTLFNRLV KK+A+V + PG+TRD G+A + + F ++DTAG+ Sbjct: 1 MSFTLAIVGRPNVGKSTLFNRLVGKKLALVDDQPGVTRDLREGEAKLGDLRFTVIDTAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 D + S+ +M TE A++ A + LF++D++AGITP D LR+K+ +I+ +NK Sbjct: 61 EDATDNSLEGRMRRLTERAVDMADICLFMVDARAGITPVDEVFAEILRRKSAHVILAANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKI---FKQKYPNHPLEMIEN 177 + A+ E Y L E + +S EH G +L+SV+ + F+ + +H + Sbjct: 121 AEGNAAEAGVLEAYGLGLGEPIPLSGEHGEGMPDLYSVLMPLAEKFEAEAVDHSPVVDLE 180 Query: 178 NKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGI 237 + ++ +++I + + V KPL++AVVGRPN GKSTLIN++LG +RLLTG ++GI Sbjct: 181 LEEDDYWDEDDIPA---APVPTREKPLQVAVVGRPNAGKSTLINKILGEDRLLTGPEAGI 237 Query: 238 TRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATI 297 TRD++S+ +W P+ IFDTAGMRK +++ E LE+ +V +++V+ E +VLLDA I Sbjct: 238 TRDAISLQVDWSGTPMRIFDTAGMRKKAKVQEKLEKLSVSDGLRAVKFAEVVVVLLDADI 297 Query: 298 PFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTIS 357 PFE+QDLRI D G AVV+A+NKWD+ +K L+DL+ + LPQ+ + T+S Sbjct: 298 PFEQQDLRIADLAEREGRAVVVAVNKWDIEDNKQEKLRDLKEAFGRLLPQLRGAPLITVS 357 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 +TG+GL+ L +++ +W RI T+ LN WL Q+PPP + +L+Y+TQ + Sbjct: 358 AKTGKGLERLHDAIMRAYDVWNRRIPTAALNRWLTGMLEQHPPPAPQGKRIKLRYMTQAK 417 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCF--QSSKNPYIKK 470 + PP F++ C+ P KIP SY RYL+N LR +F + G PIR+ Q KNPY K Sbjct: 418 TRPPGFVVMCSHPEKIPASYTRYLVNGLRQDFDMPGSPIRLTMRGQGDKNPYKGK 472 >gi|89054660|ref|YP_510111.1| GTP-binding protein EngA [Jannaschia sp. CCS1] gi|122498632|sp|Q28QC6|DER_JANSC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|88864209|gb|ABD55086.1| Small GTP-binding protein domain [Jannaschia sp. CCS1] Length = 479 Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust. Identities = 198/469 (42%), Positives = 296/469 (63%), Gaps = 15/469 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +T+AIVG PNVGKSTLFNRLV +K+A+V + PG+TRD G A + + F ++DTAG+ Sbjct: 1 MSFTLAIVGRPNVGKSTLFNRLVGRKLALVDDQPGVTRDLREGAARLADLRFTVIDTAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 D + S+ +M TE A++ A LF++D++AG+T D LRK P+++ +NK Sbjct: 61 EDANDDSLEGRMRRLTERAVSMADATLFVMDARAGVTTNDLVFADILRKSGRPVVLAANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + Q + YSL E + +SAEH G ++L V+ + + Sbjct: 121 AEGNAGQSGLLDAYSLGLGEPLALSAEHGEGMADLVQVLRPMIEAAA------------- 167 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 + E + ++ EG+ V SKPL+IAVVGRPN GKSTLIN+++G +RLLTG ++GITRD Sbjct: 168 SAEEAETDVDVEGEDRVITHSKPLQIAVVGRPNAGKSTLINQIIGEDRLLTGPEAGITRD 227 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 ++ +++ W + P+ IFDTAGMRK +++ E LE+ +V +++V+ E +VLLDA IPFE Sbjct: 228 AIGLTFEWDDVPMRIFDTAGMRKRAKVQEKLEKLSVSDGLRAVKFAEVVVVLLDAAIPFE 287 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 QDLRI D G AVV+A+NKWD+ +K L+DLR + LPQ+ + T+S +T Sbjct: 288 SQDLRIADLAEREGRAVVIAVNKWDVEPEKQQKLKDLRVGLERLLPQLRGAPLVTVSAKT 347 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G+GLD L ++++I+ W TRI+T+ LN WL +PPP R +L+Y+TQ ++ P Sbjct: 348 GKGLDKLHAAIMKIHATWNTRISTARLNQWLAAMIEAHPPPAPGGRRIKLRYMTQAKTRP 407 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCF--QSSKNPY 467 P F++ C+ P +PE+Y RYL+N LR +F + G PIR+ Q+ NPY Sbjct: 408 PGFVVMCSHPQNLPEAYSRYLVNGLRQDFDMPGTPIRLWMRSQADDNPY 456 >gi|158425952|ref|YP_001527244.1| GTP-binding protein EngA [Azorhizobium caulinodans ORS 571] gi|172047845|sp|A8HVL5|DER_AZOC5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|158332841|dbj|BAF90326.1| transcriptional regulator [Azorhizobium caulinodans ORS 571] Length = 453 Score = 406 bits (1044), Expect = e-111, Method: Compositional matrix adjust. Identities = 202/470 (42%), Positives = 290/470 (61%), Gaps = 19/470 (4%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +T+AIVG PNVGKSTLFNRLV K++A+V + PG+TRDR G A + + F IVDTAG+ Sbjct: 1 MSFTLAIVGRPNVGKSTLFNRLVGKRLALVDDRPGVTRDRREGDARLGDLAFRIVDTAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + S+ +M QTE AI +A +LFLID++ G+TP D A S R+ P I+V+NK Sbjct: 61 EEADADSLEGRMRAQTETAIGDADALLFLIDARVGLTPTDRAFASLARRSGKPTILVANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + R + E Y L V +SAEH G S+L+ I + Sbjct: 121 SEGRGGEAGAMEAYELGLGAPVPLSAEHGEGLSDLYDAICEALPA--------------- 165 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 ++ + E + + N ++P+++AV+GRPN GKSTLINRLLG +RLLTG ++GITRD Sbjct: 166 --QTAPQEEDEETEEAEANPNRPIKVAVIGRPNAGKSTLINRLLGEDRLLTGPEAGITRD 223 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+S+ W +E+FDTAG+RK +RI + LE+ + ++++++ E +VL+DAT PFE Sbjct: 224 SISVEVTWNGRALEVFDTAGLRKRARIEDKLEKLSAADALRAMKFAEVVVVLMDATKPFE 283 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 +QDLRI D V G A+VL NK D+V LR +A LPQ+ + I +SG T Sbjct: 284 EQDLRIADLVVREGRALVLGYNKSDLVGPA--AFSRLREEADHWLPQVKGVPIVPLSGLT 341 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G GLD L+ ++ +W TRI T+ LN +LQ+ +PPP + R +++Y+TQ ++ P Sbjct: 342 GRGLDKLVEAIAATYAVWNTRIPTNPLNRYLQEATDSHPPPAVSGRRVKIRYMTQPKARP 401 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 PSF++FC+ P +PESY RY+ N LR FSL G+PIR+ + NPY K Sbjct: 402 PSFVLFCSRPEALPESYLRYITNGLREAFSLPGVPIRLTLREKGNPYADK 451 >gi|254511655|ref|ZP_05123722.1| GTP-binding protein EngA [Rhodobacteraceae bacterium KLH11] gi|221535366|gb|EEE38354.1| GTP-binding protein EngA [Rhodobacteraceae bacterium KLH11] Length = 487 Score = 406 bits (1043), Expect = e-111, Method: Compositional matrix adjust. Identities = 198/478 (41%), Positives = 299/478 (62%), Gaps = 21/478 (4%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M T+AIVG PNVGKSTLFNRLV K++A+V + PG+TRD G+ + + F ++DTAG+ Sbjct: 1 MSLTLAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDLREGEGRLGDLRFTVIDTAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 D + S+ +M TE A++ A + LF+ID++ G+TP D LRK++ +I+ +NK Sbjct: 61 EDATDDSLQSRMRRLTERAVDMADVCLFMIDARVGLTPTDEMFAEILRKRSKHVILAANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + A E Y+L E V +S EH G ++L++ + PL + Sbjct: 121 AEGSAADAGVLEAYNLGLGEPVRLSGEHGEGMTDLYAQLM----------PLADAAAEQA 170 Query: 181 NEESPKENIT----SEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSG 236 ++SP ++ EG++ + +KPL++AVVGRPN GKSTLIN+++G +RLLTG ++G Sbjct: 171 QDDSPATDVELDEDDEGEAPLITDAKPLQVAVVGRPNAGKSTLINKIMGEDRLLTGPEAG 230 Query: 237 ITRDSVSISWNWKN-----HPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIV 291 ITRD++S+ +W + P+ IFDTAGMRK +++ E LE+ +V +++V+ E +V Sbjct: 231 ITRDAISLRVDWADPEGGSTPMRIFDTAGMRKKAKVQEKLEKLSVSDGLRAVKFAEVVVV 290 Query: 292 LLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDI 351 LLDA IPFE+QDLRI D G AVVLA+NKWD+ K L+DL+ + LPQ+ Sbjct: 291 LLDAAIPFEQQDLRIADLAEREGRAVVLAVNKWDVEDSKQEKLRDLKESFERLLPQLRGA 350 Query: 352 YINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLK 411 + T+S +TG GL+ L ++L + +W R+ T+ LN WL Q+PPP R +L+ Sbjct: 351 PLITVSAKTGRGLERLRAAILRAHDVWNRRVPTAALNRWLTAMLEQHPPPAPQGRRIKLR 410 Query: 412 YITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCF--QSSKNPY 467 Y+TQ ++ PP F++ C+ P+K+P+SY RYL+N LR +F + G PIR+ Q KNPY Sbjct: 411 YMTQAKTRPPGFVVMCSHPDKMPDSYSRYLVNGLREDFDMPGTPIRLTLRGQGDKNPY 468 >gi|39936158|ref|NP_948434.1| GTP-binding protein EngA [Rhodopseudomonas palustris CGA009] gi|192291876|ref|YP_001992481.1| GTP-binding protein EngA [Rhodopseudomonas palustris TIE-1] gi|81698158|sp|Q6N586|DER_RHOPA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|229784137|sp|B3Q9V3|DER_RHOPT RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|39650013|emb|CAE28536.1| GTP-binding protein [Rhodopseudomonas palustris CGA009] gi|192285625|gb|ACF02006.1| small GTP-binding protein [Rhodopseudomonas palustris TIE-1] Length = 459 Score = 406 bits (1043), Expect = e-111, Method: Compositional matrix adjust. Identities = 193/470 (41%), Positives = 291/470 (61%), Gaps = 16/470 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +T+AI+G PNVGKSTLFNRLV +K+A+V + PG+TRDR G+ + + F ++DTAG+ Sbjct: 1 MSFTLAIIGRPNVGKSTLFNRLVGQKLALVDDAPGVTRDRREGEGRLGDLNFTLIDTAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 +G S+ +M +QTE AI A +LF+ D++AG+TP D A F R+ N P+++V+NK Sbjct: 61 DEGPKGSLTARMQEQTETAIELADALLFVFDARAGLTPNDRAFADFARRANKPVVLVANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + + + E Y+L + V+ISAEH G EL+ + + + + + + Sbjct: 121 SEGKSGEIGAMESYALGLGDPVQISAEHGEGMGELYDALRPLLPEPVEDEEDDEPADQS- 179 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 +E I + +P+R+A+VGRPN GKST INRLLG RLLT ++G TRD Sbjct: 180 -----EEAIAT----------RPIRVAIVGRPNAGKSTFINRLLGEERLLTSPEAGTTRD 224 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+++ WK +FDTAG+R+ SRI E LE+ +V ++++VR E ++++DA FE Sbjct: 225 SIAVEVEWKGRDFRVFDTAGLRRRSRIEEKLEKLSVADALRAVRFAEVVVLMMDAQNRFE 284 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 +QDLRI D V G A+V+A+NKWD++ + + LRT A LPQI + I SG Sbjct: 285 EQDLRIADLVEREGRALVIAVNKWDLIERQGGQIAQLRTDADHWLPQIKGVPIVATSGML 344 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 GEG+D LM ++ + +W R+ T+ LN W ++ QNPPP + R +L Y+TQ ++ P Sbjct: 345 GEGVDRLMQAIQDAYAVWNRRVPTAALNRWFEQAISQNPPPAVSGRRLKLNYVTQTKARP 404 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 PSF++FC+ + +PESY RYL+N LR F L G P+R+ + NP+ K Sbjct: 405 PSFVVFCSRADAVPESYLRYLVNSLRGAFDLPGTPVRITLREKANPFAHK 454 >gi|260433297|ref|ZP_05787268.1| ribosome-associated GTPase EngA [Silicibacter lacuscaerulensis ITI-1157] gi|260417125|gb|EEX10384.1| ribosome-associated GTPase EngA [Silicibacter lacuscaerulensis ITI-1157] Length = 484 Score = 406 bits (1043), Expect = e-111, Method: Compositional matrix adjust. Identities = 200/475 (42%), Positives = 296/475 (62%), Gaps = 18/475 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M T+AIVG PNVGKSTLFNRLV K++A+V + PG+TRD G+ + + F ++DTAG+ Sbjct: 1 MSLTLAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDLREGEGRLGDLRFTVIDTAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 D + S+ +M TE A++ A + LF+ID++ G+TP D LRK++ +I+ +NK Sbjct: 61 EDATDDSLQGRMRRLTERAVDMADVCLFMIDARTGVTPTDELFAEILRKRSKHVILAANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + A E Y L E + +S EH G ++L++ + PL K+ Sbjct: 121 AEGAAADAGVLEAYGLGLGEPIRLSGEHGEGMTDLYAALM----------PLADAMEEKQ 170 Query: 181 NEESPKENI------TSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQ 234 EE+P+ ++ +EG+ KPL++AVVGRPN GKSTLIN++LG +RLLTG + Sbjct: 171 AEETPETDVDLDEAGETEGEPPAITADKPLQVAVVGRPNAGKSTLINKILGEDRLLTGPE 230 Query: 235 SGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLD 294 +GITRD++S+ +W P+ IFDTAGMRK +++ + LE+ +V +++V+ E +VLLD Sbjct: 231 AGITRDAISLRIDWNGTPMRIFDTAGMRKKAKVQDKLEKLSVSDGLRAVKFAEVVVVLLD 290 Query: 295 ATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYIN 354 A IPFE+QDLRI D G AVV+A+NKWD+ K L+DL+ + LPQ+ + Sbjct: 291 AAIPFEQQDLRIADLAEREGRAVVVAVNKWDVEEHKQEKLRDLKESFERLLPQLRGAPLV 350 Query: 355 TISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYIT 414 T+S +TG GLD L ++L + +W RI T+ LN WL Q+PPP R +L+Y+T Sbjct: 351 TVSAKTGRGLDRLHEAILRAHDVWNRRIPTAALNRWLTAMVEQHPPPAPQGRRIKLRYMT 410 Query: 415 QIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCF--QSSKNPY 467 Q ++ PP F++ C+ P+K+P SY RYL+N LR +F + G PIR+ Q KNPY Sbjct: 411 QAKTRPPGFVVMCSHPDKMPASYTRYLVNGLRDDFDMPGTPIRLTLRGQGDKNPY 465 >gi|217976948|ref|YP_002361095.1| GTP-binding protein EngA [Methylocella silvestris BL2] gi|217502324|gb|ACK49733.1| small GTP-binding protein [Methylocella silvestris BL2] Length = 467 Score = 405 bits (1042), Expect = e-111, Method: Compositional matrix adjust. Identities = 193/470 (41%), Positives = 304/470 (64%), Gaps = 9/470 (1%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 ++TIAI+G PNVGKSTLFNRLV K++A+V + PG+TRDR G+A + ++F I+DTAG+ Sbjct: 1 MFTIAIIGRPNVGKSTLFNRLVGKRLALVDDRPGVTRDRREGEARLGDLVFKIIDTAGLE 60 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 +G S++ +M QTE AI A + FL D++ G+TP D + +R+ + P+I+++NK Sbjct: 61 EGAAASLSGRMRAQTERAIESADAVFFLFDARLGLTPDDRFFANLVRRADKPLILIANKA 120 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 + RI + E Y L + V +SAEH G S+L+S I ++ P E E Sbjct: 121 EGRIGEAGAREGYDLGLGDPVPLSAEHGDGMSDLYSAI----REALP----EQTELPAEE 172 Query: 182 EESPKENITSEGKSSVK-NISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 EE I E + + + +KPLRIA++GRPN GKSTL+N ++G +RLLTG + G+TRD Sbjct: 173 EEGETRLILGEDEDGSELDPTKPLRIAIIGRPNAGKSTLLNTIIGQDRLLTGPEPGLTRD 232 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 ++ I + W I++FDTAG+R+ +++ + LE+ ++++ + E ++LLDATIPFE Sbjct: 233 TIGIDFEWGGRKIKMFDTAGLRRRAKVEDKLEKLAGHDAVRAAKFAEVAVLLLDATIPFE 292 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 KQDL + D V G A+V+ +NKWD++ + L +LR +AI+ LPQ+ + +SG T Sbjct: 293 KQDLTLADLVEREGRALVIGVNKWDLIEHRGAKLSELREEAIRLLPQVKGAPVVPLSGAT 352 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G+G+ LM ++ ++++W RI+T+ LN WL Q+PPP + R +++Y+TQ+++ P Sbjct: 353 GDGVGKLMEAIFRVHEVWNKRISTARLNRWLAGALEQSPPPAVSGRRIKIRYMTQLRARP 412 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 P FL+F + +P SY+RYL+N LR F L G+PIR+ ++S NPY + Sbjct: 413 PYFLLFGNQLDALPASYERYLVNGLRQAFDLPGVPIRISKKTSDNPYADR 462 >gi|254460403|ref|ZP_05073819.1| GTP-binding protein [Rhodobacterales bacterium HTCC2083] gi|206676992|gb|EDZ41479.1| GTP-binding protein [Rhodobacteraceae bacterium HTCC2083] Length = 490 Score = 405 bits (1042), Expect = e-111, Method: Compositional matrix adjust. Identities = 201/476 (42%), Positives = 300/476 (63%), Gaps = 18/476 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +T+AIVG PNVGKSTLFNRLV K++A+V + PG+TRD G A + + F ++DTAG+ Sbjct: 1 MSFTLAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDLREGDARLADLRFTVIDTAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + + S+ +M TE A++ A + LF+ID++AG+TP D LRK++ +I+ +NK Sbjct: 61 EEATDESLQGRMRRLTERAVDMADICLFMIDARAGVTPADQVFAEILRKRSAHVILAANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKI---FKQKY----PNHPLE 173 + A E YSL E + +SAEH G ++L++ + + F ++ P + Sbjct: 121 GEGSAADAGVIEAYSLGLGEPIRLSAEHGEGLNDLYTQLMPLADGFAERALDQAPETDVA 180 Query: 174 MIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGS 233 + E+++ +E P E T++ KP++IAVVGRPN GKSTLIN ++G +RLLTG Sbjct: 181 LDEDDEWDENRPFEMPTAK---------KPMQIAVVGRPNAGKSTLINMIMGEDRLLTGP 231 Query: 234 QSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLL 293 ++GITRD++S+ W I IFDTAGMRK +++ + LE+ +V +++V+ E +VLL Sbjct: 232 EAGITRDAISLRSEWNGTHIRIFDTAGMRKKAKVQDKLEKLSVSDGLRAVKFAEVVVVLL 291 Query: 294 DATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYI 353 DA IPFE+QDLRI D G AV++A+NKWD+ DK N L+DLR + LPQ+ + Sbjct: 292 DAAIPFEQQDLRIADLAEREGRAVIVAVNKWDIEDDKQNKLRDLRESFERLLPQLRGAPL 351 Query: 354 NTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYI 413 T+S +TG GLD L ++L K W TR+ T+ LN WL +PPP + +L+Y+ Sbjct: 352 VTVSAKTGRGLDRLHDAILSAYKTWNTRVPTAALNRWLAGMVEAHPPPAPAGKRIKLRYM 411 Query: 414 TQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIR--MCFQSSKNPY 467 TQ ++ PP F++ C+ P K+ ESY RYL+N LR +F + G PIR M Q+ NP+ Sbjct: 412 TQAKTRPPGFVVMCSLPEKMSESYSRYLVNGLRTDFDMPGTPIRLYMRSQNDSNPF 467 >gi|114771865|ref|ZP_01449258.1| GTP-binding protein EngA [alpha proteobacterium HTCC2255] gi|114547681|gb|EAU50572.1| GTP-binding protein EngA [alpha proteobacterium HTCC2255] Length = 497 Score = 405 bits (1040), Expect = e-111, Method: Compositional matrix adjust. Identities = 199/472 (42%), Positives = 304/472 (64%), Gaps = 5/472 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +T+A+VG PNVGKSTLFNRLV +++A+V + PG+TRD G A + V F ++DTAG+ Sbjct: 1 MTFTVALVGRPNVGKSTLFNRLVGRRLALVDDQPGVTRDLREGDAKMGPVKFTVIDTAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + + S+ +M TE A++ A + +F++D++AG+ P D LRKK+ +I+V+NK Sbjct: 61 EEATDESLQGRMRMLTERAVDMADVCIFMMDARAGVLPADRVFAEILRKKSAKVILVANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + + F++ +SL E V +S EH G +L V+ I K+ + L E + Sbjct: 121 AEGNAGEVGFFDAFSLGLGEPVRLSGEHGEGMVDLQHVLMPISKEFEEDEDLLEPETDID 180 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 E+ + G + +PL+I+++GRPN GKSTL+N++LG R+LTG ++GITRD Sbjct: 181 IEDL---DDEDSGLEISYSAERPLQISIIGRPNAGKSTLVNQILGQERMLTGPEAGITRD 237 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+SI+ +W + P+ ++DTAG+RK +++ E LE+ +V +++V+ E +VLLDA IPFE Sbjct: 238 SISINHDWDDVPMRLWDTAGIRKKAKVQEKLEKLSVSDGLRAVKFSEVVVVLLDAAIPFE 297 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 +QDLRI D G AVV+A+NKWD+ ++K L+D+R K + LPQ+ + TIS +T Sbjct: 298 QQDLRIADLAEREGRAVVVAVNKWDVETEKQEKLKDIREKFTRLLPQLRGAPLVTISAKT 357 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G GLD L ++L +K+W R++TS N WL +PPP R RL+Y+TQ+++ P Sbjct: 358 GRGLDRLHAAILSAHKVWNKRLSTSQCNRWLMDMTDAHPPPAPGGRRIRLRYMTQVKARP 417 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIR--MCFQSSKNPYIKK 470 PSF++ C+ P+ +P SY RYL+N LR +FS+ G PIR M QS KNPY K Sbjct: 418 PSFVVMCSHPDLLPTSYNRYLVNGLREDFSMPGTPIRIFMRSQSDKNPYADK 469 >gi|56697187|ref|YP_167551.1| GTP-binding protein EngA [Ruegeria pomeroyi DSS-3] gi|81676219|sp|Q5LR04|DER_SILPO RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|56678924|gb|AAV95590.1| GTP-binding protein EngA [Ruegeria pomeroyi DSS-3] Length = 487 Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust. Identities = 202/477 (42%), Positives = 305/477 (63%), Gaps = 19/477 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M T+AIVG PNVGKSTLFNRLV K++A+V + PG+TRD GQA + + F ++DTAG+ Sbjct: 1 MSLTLAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDLREGQARLGDLRFTVIDTAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + S+ +M TE A++ A + LF+ID++AG+TP D LR+++ +I+ +NK Sbjct: 61 ETATDDSLQGRMRRLTERAVDMADICLFMIDARAGVTPNDEIFADILRRRSAHVILAANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF-------KQKYPNHPLE 173 + A E Y L E + +SAEH G +EL++V+ + +++ P ++ Sbjct: 121 AEGAAADAGVIEAYGLGLGEPIRLSAEHGEGLNELYAVLMPLADEMEQQAEEQAPETDVD 180 Query: 174 MIENNKRNEE-SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTG 232 + ++ EE + IT E KPL++AVVGRPN GKSTLINR+LG +RLLTG Sbjct: 181 LDPEDEDGEEVAAPHAITRE---------KPLQVAVVGRPNAGKSTLINRILGEDRLLTG 231 Query: 233 SQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVL 292 ++GITRD++S+ +W + P+ IFDTAGMRK +++ E LE+ +V +++V+ E +VL Sbjct: 232 PEAGITRDAISLQIDWNDTPMRIFDTAGMRKKAKVQEKLEKLSVSDGLRAVKFAEVVVVL 291 Query: 293 LDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIY 352 LDA IPFE+QDLRI D G AVV+A+NKWD+ +K + L++L+ + LPQ+ Sbjct: 292 LDAAIPFEQQDLRIADLAEREGRAVVIAVNKWDVEENKQDKLRELKESFERLLPQLRGAP 351 Query: 353 INTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKY 412 + T+S +TG GL+ L ++L +++W RI T+ LN WL Q+PPP + +L+Y Sbjct: 352 LVTVSAKTGRGLERLHDAILRAHEVWNRRIPTAALNRWLIGMLEQHPPPAPQGKRIKLRY 411 Query: 413 ITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCF--QSSKNPY 467 +TQ ++ PP F++ C+ P+K+PESY RYL+N LR +F + G PIR+ Q KNPY Sbjct: 412 MTQAKTRPPGFVVMCSHPDKMPESYSRYLVNGLRADFDMPGTPIRLTLRGQGDKNPY 468 >gi|254466194|ref|ZP_05079605.1| GTP-binding protein EngA [Rhodobacterales bacterium Y4I] gi|206687102|gb|EDZ47584.1| GTP-binding protein EngA [Rhodobacterales bacterium Y4I] Length = 487 Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust. Identities = 201/480 (41%), Positives = 295/480 (61%), Gaps = 20/480 (4%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +T+AIVG PNVGKSTLFNRLV KK+A+V + PG+TRD G+A + + F ++DTAG+ Sbjct: 1 MSFTLAIVGRPNVGKSTLFNRLVGKKLALVDDQPGVTRDLREGEARLGDLRFTVIDTAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 D + S+ +M TE A++ A + LF+ID++ G+TP D LR+K+ +I+ +NK Sbjct: 61 EDATDNSLEGRMRRLTERAVDMADICLFMIDARTGVTPTDEIFADILRRKSAHVILAANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + A+ E Y L E + +S EH G +L+ ++ PL + Sbjct: 121 AEGNAAEAGVLEAYGLGLGEPLRLSGEHGEGMPDLYGIL----------QPLAEKFEAEA 170 Query: 181 NEESPKENITSEGKSS--------VKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTG 232 + SP ++ + V +KPL++AVVGRPN GKSTLIN++LG RLLTG Sbjct: 171 VDHSPDTDVEVYEEIGEDEEEVVPVPTDAKPLQVAVVGRPNAGKSTLINKILGEERLLTG 230 Query: 233 SQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVL 292 ++GITRD++S+ NW P+ +FDTAGMRK +++ E LE+ +V +++V+ E +VL Sbjct: 231 PEAGITRDAISLKINWNGVPMRVFDTAGMRKKAKVQEKLEKLSVSDGLRAVKFAEVVVVL 290 Query: 293 LDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIY 352 LDA+IPFE+QDLRI D G AVV+A+NKWD K + L+DL+ + LPQ+ Sbjct: 291 LDASIPFEQQDLRIADLAEREGRAVVVAVNKWDAEEHKQDKLRDLKEAFGRLLPQLRGAP 350 Query: 353 INTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKY 412 + T+S +TG+GLD L +++ W R+ T+ LN WL Q+PPP + +L+Y Sbjct: 351 LVTVSAKTGKGLDRLQDAIMRAYATWNRRVPTAALNRWLVGMLEQHPPPAPQGKRIKLRY 410 Query: 413 ITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIR--MCFQSSKNPYIKK 470 +TQ +S PP F++ C+ P+K+PESY RYL+N LR +F + G PIR M Q KNPY K Sbjct: 411 MTQAKSRPPGFVVMCSHPDKLPESYTRYLVNGLREDFDMPGTPIRLYMRGQGDKNPYKGK 470 >gi|319407564|emb|CBI81214.1| GTP-binding protein [Bartonella sp. 1-1C] Length = 477 Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust. Identities = 206/483 (42%), Positives = 305/483 (63%), Gaps = 25/483 (5%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M TIAIVG PNVGKSTLFNRLV +K+A+V + PG+TRDR A + + F+++DTAG+ Sbjct: 1 MSLTIAIVGRPNVGKSTLFNRLVGQKLALVDDQPGVTRDRRIHSAKLQDLHFDVIDTAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + N ++ +M QT++AI+EA LILF++D+K+GIT D +S +RK PI++VSNK Sbjct: 61 EEADNHTLEGRMRAQTKIAIDEADLILFVLDAKSGITRSDLDFSSLIRKSGKPIVLVSNK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF------KIF------KQKYP 168 +++IA YE +SL E ISAEH G S+L I K+F ++ Y Sbjct: 121 SESKIAIAGEYEAWSLGLGEPCPISAEHGHGLSDLRDAIVAAIGADKVFNLRQEKEKTYT 180 Query: 169 NHPLEMIENNKRN--EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGY 226 + I +N N EE P V + K +RIAV+GRPN GKSTLIN +L Sbjct: 181 TTQISSISDNIDNTVEEDP-----------VYDEKKTIRIAVIGRPNTGKSTLINSMLKQ 229 Query: 227 NRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTC 286 +RLLTG ++GITRDS+S+ W W N I++FDTAG+R+ S++ E LE+ +V S++++R Sbjct: 230 DRLLTGPEAGITRDSISVDWEWNNRRIKLFDTAGLRRKSKVQEKLEKLSVVDSLRAIRFA 289 Query: 287 ETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLP 346 E +++ DAT FEKQDL+I D V G ++A NKWD++ ++ L L K + LP Sbjct: 290 EIVVIVFDATTSFEKQDLQISDLVIREGRVPIIAFNKWDLIENRHEALNTLYEKCTRLLP 349 Query: 347 QIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNR 406 Q+ + +SG G+G++ LM ++ ++++W RI+T LN WL+ + PPP + R Sbjct: 350 QVRGLRAVPLSGLYGQGINKLMENITMMHRVWNRRISTGKLNRWLETMIINYPPPAVSGR 409 Query: 407 YNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNP 466 ++KYITQ+++ PP F+I C+ ++P+SY RYL N LR F + G+PIR+ Q+S NP Sbjct: 410 RLKVKYITQVKTRPPRFVISCSKSEEMPQSYLRYLSNGLRDKFDMQGVPIRLSLQTSDNP 469 Query: 467 YIK 469 + K Sbjct: 470 FAK 472 >gi|298291071|ref|YP_003693010.1| ribosome-associated GTPase EngA [Starkeya novella DSM 506] gi|296927582|gb|ADH88391.1| ribosome-associated GTPase EngA [Starkeya novella DSM 506] Length = 449 Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust. Identities = 199/470 (42%), Positives = 291/470 (61%), Gaps = 22/470 (4%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M T+AIVG PNVGKSTLFNRLV K++A+V + PG+TRDR G + + F ++DTAG+ Sbjct: 1 MTMTVAIVGRPNVGKSTLFNRLVGKRLALVDDRPGVTRDRREGDGRLGHLSFRVIDTAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + K S+ +M QTE AI++A ++LFLID+KAG+TP D A R+ I+++NK Sbjct: 61 EEAKAESLEGRMRAQTEAAIDDADVLLFLIDAKAGVTPSDRAFADLARRSGKHTILIANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + R ++ + Y+L + VE+SAEH G ++L + + E R Sbjct: 121 AEARGSEGGTLDAYALGLGDPVELSAEHGDGMADLVRALAECLPDDADEEEDETTSEGGR 180 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 +R+AV+GRPN GKSTLIN LLG +RLLTG ++GITRD Sbjct: 181 R----------------------IRVAVLGRPNAGKSTLINALLGEDRLLTGPEAGITRD 218 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+++ + +FDTAGMRK +RI + LE+ +V +++ R E +VL+DAT PFE Sbjct: 219 SIAVDIERHGVALRVFDTAGMRKRARIDDKLEKLSVADGLRAARFAEVVVVLMDATHPFE 278 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 +QDLRI D G AVVLAL+K D+V D+ +++ +R +A LPQ+ + +SG T Sbjct: 279 EQDLRIADLAEREGRAVVLALSKADLVKDQPGIVKRMREEADHWLPQLRGAPVVLVSGLT 338 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 GEGLD L+ +V E +++W R+ T+ LN WL T ++PPP + R +L+YITQ ++ P Sbjct: 339 GEGLDRLVRAVSEAHQVWNRRVATNPLNRWLNDTTSEHPPPAVSGRRIKLRYITQPKARP 398 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 PSF++FC+ + +PESY RYL+N LR +F L G+PIR+ + NPY +K Sbjct: 399 PSFVLFCSRADALPESYVRYLVNNLRASFDLPGVPIRLTLREKDNPYAEK 448 >gi|188583713|ref|YP_001927158.1| GTP-binding protein EngA [Methylobacterium populi BJ001] gi|179347211|gb|ACB82623.1| small GTP-binding protein [Methylobacterium populi BJ001] Length = 446 Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust. Identities = 194/466 (41%), Positives = 289/466 (62%), Gaps = 25/466 (5%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AIVG PNVGKSTLFNRLV +K+A+V + PG+TRDR G+ I V F ++DTAG+ + Sbjct: 5 TVAIVGRPNVGKSTLFNRLVGRKLALVDDRPGVTRDRREGEGFIGDVAFRVIDTAGLEEA 64 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 S+ +M QTE AI EA +LF+ID++AG+ P D +R+ P+I+++NK + Sbjct: 65 DADSLLGRMRAQTEAAILEADAVLFVIDARAGVLPADRPFAELVRRSGCPVILIANKAEG 124 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 YE +SL + + SAEH G L + ++ + Sbjct: 125 GAGMAGAYEAFSLGLGDPIPFSAEHGEGLGSLQDALREVLPEPDE--------------- 169 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 + K LR+A+VGRPN GKSTLINR++G +RLL G ++GITRDS+S Sbjct: 170 ----------DEEDEEGGKGLRVAIVGRPNAGKSTLINRMIGEDRLLVGPEAGITRDSIS 219 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + W W+ I++ DTAGMR+ +RI + LE+ V +++VR E +VLLDATIPFEKQD Sbjct: 220 LDWEWRGRRIKLHDTAGMRRRARIDDKLEKLAVSDGLRAVRFAEVVVVLLDATIPFEKQD 279 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 L IVD V + G A+V+ LNKWD+V+D+ LL+ LR + LPQ+ + + +SG G+G Sbjct: 280 LTIVDLVESEGRALVIGLNKWDLVADQPGLLKSLREDCTRLLPQVRGVSVVPLSGLAGDG 339 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 +D LM +V++ +++W R++T+ +N+WL +NPPP + R +++Y TQ++S PP F Sbjct: 340 IDKLMQAVVDASEVWSRRVSTARINAWLTDATQRNPPPAVSGRRIKIRYATQVKSRPPHF 399 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIK 469 +F + +P+SY RYL+N LR F L G PIR+ +++KNP+ K Sbjct: 400 ALFGNQLDALPKSYTRYLVNGLREAFDLPGSPIRLSLRTTKNPFDK 445 >gi|27379163|ref|NP_770692.1| GTP-binding protein EngA [Bradyrhizobium japonicum USDA 110] gi|37999663|sp|Q89MZ0|DER_BRAJA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|27352313|dbj|BAC49317.1| GTP-binding protein [Bradyrhizobium japonicum USDA 110] Length = 460 Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust. Identities = 196/471 (41%), Positives = 292/471 (61%), Gaps = 17/471 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +TIAI+G PNVGKSTLFNRLV +K+A+V + PG+TRDR G+A + + F I+DTAG+ Sbjct: 1 MSFTIAIIGRPNVGKSTLFNRLVGQKLALVDDLPGVTRDRREGEARLGDLEFTIIDTAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 +G S+ +M +QTE AI +A + F++D++ G+TP D A F R+ N P+++V+NK Sbjct: 61 DEGAKGSLTARMQEQTEAAIAQADALFFVVDARIGLTPTDRAFADFARRANKPVLLVANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + + E ++L + ++ISAEH G EL+ + K+ + P+E E+ Sbjct: 121 SEGKHGDAGAMEAFALGLGDPIQISAEHGEGMGELYDALAKLMPE-----PVEEDEDEDD 175 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 S +E T +P+R+A+VGRPN GKSTLIN LLG RLLT ++G TRD Sbjct: 176 APLSEEEAAT-----------RPIRVAIVGRPNAGKSTLINHLLGEERLLTSPEAGTTRD 224 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+++ NWK +FDTAG+R+ SRI E LE+ +V ++++VR E ++++D FE Sbjct: 225 SIAVEINWKGREFRVFDTAGLRRRSRIEEKLEKLSVADALRAVRFAEVVVLMMDTQNRFE 284 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDK-LNLLQDLRTKAIKNLPQIGDIYINTISGR 359 +QDLRI D V G A+VLA NKWD++ K + LR A LPQ+ + I +SG Sbjct: 285 EQDLRIADLVEREGRALVLAANKWDLMETKGGGAISGLRRDADHWLPQVKGVPIVAVSGL 344 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 GEG+D LM ++ + +W R++TS LN W ++ NPPP + R +L YITQ ++ Sbjct: 345 MGEGIDRLMQAIQDAYAVWNRRVSTSALNRWFEQAVQANPPPAVSGRRLKLNYITQTKAR 404 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 PPSF++FC+ + +P+SY RYL N +R F L G P+R+ + NP+ K Sbjct: 405 PPSFVLFCSRADAVPQSYLRYLTNSMREAFDLPGTPVRITLREKANPFAHK 455 >gi|163733995|ref|ZP_02141436.1| GTP-binding protein EngA [Roseobacter litoralis Och 149] gi|161392531|gb|EDQ16859.1| GTP-binding protein EngA [Roseobacter litoralis Och 149] Length = 492 Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust. Identities = 202/481 (41%), Positives = 301/481 (62%), Gaps = 24/481 (4%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +T+AIVG PNVGKSTLFNRLV K++A+V + PG+TRD G A + + F ++DTAG+ Sbjct: 1 MSFTLAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDLREGAARLADLRFTVIDTAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 D + S+ +M TE A++ A + LF++D++ GITP D LRK+ +I+ +NK Sbjct: 61 EDVTDDSLQGRMRRLTERAVDMADICLFMVDARVGITPTDLVFADILRKRAGHVILAANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + A E YSL E + +SAEH G ++L++ + PL + Sbjct: 121 SEGAAADAGVIEAYSLGLGEPIRLSAEHGEGLNDLYTHLM----------PLADAYAERA 170 Query: 181 NEESPKENITSEGKSS-------VKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGS 233 E++P+ ++T + S + +KPL++AVVGRPN GKSTL+N++LG +RLLTG Sbjct: 171 AEDAPEIDVTLDEDSGDMEAAIRMPTANKPLQVAVVGRPNSGKSTLVNQILGEDRLLTGP 230 Query: 234 QSGITRDSVSISWNWKNH-----PIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCET 288 ++GITRD++S+ +W P+ IFDTAGMRK +++ E LE+ +V +++V+ E Sbjct: 231 EAGITRDAISLRMDWVGPEGDVIPMRIFDTAGMRKKAKVQEKLEKLSVGDGLRAVKFAEV 290 Query: 289 TIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQI 348 +VLLDA IPFE+QDLRI D G AVV+A+NKWD+ +K L+DLR + LPQ+ Sbjct: 291 VVVLLDAAIPFEQQDLRIADLAEREGRAVVVAVNKWDIEENKQAKLKDLRESFERLLPQL 350 Query: 349 GDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYN 408 + T+S RTG GLD L ++L ++W R+TT+ LN WL +PPP + Sbjct: 351 RGAPLVTVSARTGRGLDRLHTAILRAYEVWNRRVTTAQLNRWLAGMLEAHPPPAPQGKRI 410 Query: 409 RLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIR--MCFQSSKNP 466 +L+Y+TQ ++ PP F++ C+ P+K+PESY RYL+N LR++F + G PIR M Q+ NP Sbjct: 411 KLRYMTQAKTRPPGFVVMCSHPDKVPESYSRYLVNGLRVDFDMPGAPIRLWMRGQNDSNP 470 Query: 467 Y 467 Y Sbjct: 471 Y 471 >gi|103487684|ref|YP_617245.1| GTP-binding protein EngA [Sphingopyxis alaskensis RB2256] gi|98977761|gb|ABF53912.1| Small GTP-binding protein domain [Sphingopyxis alaskensis RB2256] Length = 456 Score = 402 bits (1033), Expect = e-110, Method: Compositional matrix adjust. Identities = 190/468 (40%), Positives = 289/468 (61%), Gaps = 23/468 (4%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAIVG PNVGKSTLFNRLV K++A+V + PG+TRDR G + G+ F IVDTAG D Sbjct: 6 TIAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDRREGDGKLLGLEFRIVDTAGFEDQ 65 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 ++ +M QTE A+ EA LFLID++AG+TP D I +LR ++ P+I+ +NK + Sbjct: 66 DAATLPGRMRAQTEKAVREADAALFLIDARAGVTPLDEEIARWLRSEDTPVILCANKAEG 125 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + E YSL F+ + +SAEH G +L + I + P E ++ +EE Sbjct: 126 KQGEAGLMEAYSLGFETVFALSAEHGEGLVDLFDALRPIVE---PFMDAETAAVDEADEE 182 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 + + P+++A+VGRPN GKSTLINR++G +RL+TG ++GITRDS+ Sbjct: 183 A----------------AGPMKLAIVGRPNAGKSTLINRMIGEDRLITGPEAGITRDSIR 226 Query: 244 ISWNWKN----HPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPF 299 + W W+ H I++FDTAGMRK +++ + LE+ +V ++ +V E ++LLDAT Sbjct: 227 VDWRWEKDGEVHEIQLFDTAGMRKRAKVQDKLEKLSVADALHAVDFAEVVVLLLDATKGL 286 Query: 300 EKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGR 359 E QDLRI D V G A+++ALNKWD+ D +L +R L Q+ + + +ISG Sbjct: 287 EAQDLRIADRVLQEGRALIVALNKWDIAEDPSSLFNGVRAALDDGLSQVKGVPVLSISGA 346 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 TG+G+D L+ E +W R++T+ LN W + NPPP + +L+YITQ ++ Sbjct: 347 TGKGIDTLVRVAFEQRAIWTNRVSTAKLNRWFEAAVTANPPPAPGGKRIKLRYITQARTR 406 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 PP+F++F + + +P SY+RYL+N +R G+P+R+ F++++NPY Sbjct: 407 PPTFVVFGSRTDALPGSYERYLVNGMRKELGFQGVPVRLNFRNARNPY 454 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 51/169 (30%), Positives = 74/169 (43%), Gaps = 11/169 (6%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 +S+ IA+VGRPNVGKSTL NRL+G L Q G+TRD I DTA Sbjct: 1 MSRHATIAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDRREGDGKLLGLEFRIVDTA 60 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G T L + ++ ++VR + + L+DA D I + + V+L Sbjct: 61 GFEDQDAAT--LPGRMRAQTEKAVREADAALFLIDARAGVTPLDEEIARWLRSEDTPVIL 118 Query: 320 ALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLM 368 NK + + L++ +G + +S GEGL DL Sbjct: 119 CANKAEGKQGEAGLMEAY---------SLGFETVFALSAEHGEGLVDLF 158 >gi|148255174|ref|YP_001239759.1| GTP-binding protein EngA [Bradyrhizobium sp. BTAi1] gi|166224309|sp|A5EI59|DER_BRASB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|146407347|gb|ABQ35853.1| GTP-binding protein, essential for cell growth [Bradyrhizobium sp. BTAi1] Length = 456 Score = 402 bits (1033), Expect = e-110, Method: Compositional matrix adjust. Identities = 193/470 (41%), Positives = 291/470 (61%), Gaps = 19/470 (4%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +TIAI+G PNVGKSTLFNRLV +K+A+V + PG+TRDR G+A + + F I+DTAG+ Sbjct: 1 MSFTIAIIGRPNVGKSTLFNRLVGQKLALVDDMPGVTRDRREGEAKLGDLQFTIIDTAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 G S+ +M +QTE AI A + F+ID++AG+TP D F R+ + P+++++NK Sbjct: 61 DGGPKGSLTARMQEQTETAIALADALFFVIDARAGLTPADRTFADFARRADKPVLLLANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + + + E Y+L + ++ISAEH G EL+ + + P E+ E+ + Sbjct: 121 SEGKHGELGAMESYALGLGDPIQISAEHGEGMGELYDALRGLV----PETEDEVDEHEET 176 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 +EE ++P+R+A+VGRPN GKSTLIN LLG RLLT ++G TRD Sbjct: 177 DEE---------------RAARPIRVAIVGRPNAGKSTLINHLLGEERLLTSPEAGTTRD 221 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+++ +K IFDTAG+R+ SRI E LE+ +V ++++VR E ++++DA FE Sbjct: 222 SIAVEIEYKGRGFRIFDTAGLRRRSRIEEKLEKLSVADALRAVRFAEVVVLMMDAQNRFE 281 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 +QDLRI D + G A+V+A+NKWD++ K + LR LPQ+ + I +SG Sbjct: 282 EQDLRIADLIEREGRALVIAVNKWDLMESKPGQISALRHDVDHWLPQVSGVPIVAVSGLM 341 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 GEG+D LM +++E +W R+ T+ LN W ++ NPPP + R +L YITQ ++ P Sbjct: 342 GEGIDRLMQAIVESYAVWNRRVPTAALNRWFEEAIANNPPPAVSGRRLKLNYITQTKARP 401 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 PSF++FC+ + IP+SY RYLIN +R F L G P+R+ + NP+ K Sbjct: 402 PSFVLFCSRADAIPQSYLRYLINSMRETFELPGTPVRITLREKANPFAHK 451 >gi|254476934|ref|ZP_05090320.1| small GTP-binding protein domain [Ruegeria sp. R11] gi|214031177|gb|EEB72012.1| small GTP-binding protein domain [Ruegeria sp. R11] Length = 488 Score = 402 bits (1032), Expect = e-110, Method: Compositional matrix adjust. Identities = 198/480 (41%), Positives = 301/480 (62%), Gaps = 20/480 (4%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +T+AIVG PNVGKSTLFNRLV K++A+V + PG+TRD G+A + + F +VDTAG+ Sbjct: 1 MSFTLAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDLREGEARLGDLRFTVVDTAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + + S+ +M TE A++ A + LF+ID++ G+TP D LRKK+ +I+ +NK Sbjct: 61 EEATDNSLEGRMRRLTERAVDMADVCLFMIDARVGVTPTDEVFADILRKKSAHVILAANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + A E Y L E + +S EH G ++L+ + PL + Sbjct: 121 SEGSAADAGVLEAYGLGLGEPIRLSGEHGEGMNDLYVQLM----------PLADKFDKIA 170 Query: 181 NEESPKENITSEGKSS--------VKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTG 232 SP+ ++T + + + +KPL++AVVGRPN GKSTLIN++LG +RLLTG Sbjct: 171 EATSPETDVTVDEEIDEDDDLSVPMPTANKPLQVAVVGRPNAGKSTLINKILGEDRLLTG 230 Query: 233 SQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVL 292 ++GITRD++S+ +W+ P+ +FDTAGMRK +++ E LE+ +V +++V+ E +VL Sbjct: 231 PEAGITRDAISLQIDWQGVPMRVFDTAGMRKKAKVQEKLEKLSVSDGLRAVKFAEVVVVL 290 Query: 293 LDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIY 352 LDA+IPFE+QDLRI D G AVV+A+NKWD +K L+DL+ + LPQ+ Sbjct: 291 LDASIPFEQQDLRIADLAEREGRAVVVAVNKWDAEENKQEKLRDLKEAFGRLLPQLRGAP 350 Query: 353 INTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKY 412 + T+S +TG+GLD L +++ ++W R+ T+ LN WL Q+PPP + +L+Y Sbjct: 351 LVTVSAKTGKGLDRLHAAIMRAYEIWNRRVPTAALNRWLIGMLEQHPPPAPQGKRIKLRY 410 Query: 413 ITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIR--MCFQSSKNPYIKK 470 +TQ ++ PP+F++ C+ P+K+P+SY RYL+N LR +F + G PIR M Q KNPY K Sbjct: 411 MTQAKTRPPAFVVMCSHPDKLPDSYTRYLVNGLRQDFDMPGTPIRLYMRGQGDKNPYKGK 470 >gi|115525346|ref|YP_782257.1| GTP-binding protein EngA [Rhodopseudomonas palustris BisA53] gi|122295592|sp|Q07LA7|DER_RHOP5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|115519293|gb|ABJ07277.1| small GTP-binding protein [Rhodopseudomonas palustris BisA53] Length = 460 Score = 402 bits (1032), Expect = e-110, Method: Compositional matrix adjust. Identities = 194/470 (41%), Positives = 288/470 (61%), Gaps = 15/470 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +T AI+G PNVGKSTLFNRLV +K+A+V + PG+TRDR G+ + + F ++DTAG+ Sbjct: 1 MSFTFAIIGRPNVGKSTLFNRLVGQKLALVDDTPGVTRDRREGEGRLGDLEFTLIDTAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 +G S+ ++M QTE AI A ++F+ D++AG+TP D A F R+ N P+I+V+NK Sbjct: 61 DEGAKGSLTERMQQQTETAIELADALMFVFDARAGLTPNDRAFADFARRANKPVILVANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + + + E Y+L + V+ISAEH G SEL+ + + + Sbjct: 121 SEGKAGEIGAMESYALGLGDPVQISAEHGEGLSELYDAFRALMPEPDEEAEEDDDVEGLT 180 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 EE K +P+R+A+VGRPN GKST+IN LLG RLLT ++G TRD Sbjct: 181 EEEFSK---------------RPIRVAIVGRPNAGKSTMINHLLGEERLLTSPEAGTTRD 225 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+++S ++K IFDTAG+R+ SRI E LE+ +V ++++VR E +++LDA FE Sbjct: 226 SIAVSVDYKGRQFRIFDTAGLRRRSRIEEKLEKLSVADALRAVRFAEVVVLMLDAQTKFE 285 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 +QDLRI D + G A+V+A+NKWD+V + LRT+A LPQ+ + I +SG Sbjct: 286 EQDLRIADLIEREGRALVIAVNKWDLVERHPGQIGALRTEADHWLPQVKGVPIVAVSGLM 345 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 GEG+D LM ++ + W R+ T+ LN W ++ NPPP + R +L Y+TQ ++ P Sbjct: 346 GEGIDRLMSAIEDSYATWNRRVPTAALNRWFEQAIQTNPPPAVSGRRLKLNYVTQAKARP 405 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 PSF++FC+ + +PESY RYL+N LR F L G P+R+ + NP+ K Sbjct: 406 PSFIVFCSRADAVPESYLRYLVNSLRNYFELPGTPVRIMLREKANPFAHK 455 >gi|114762902|ref|ZP_01442334.1| GTP-binding protein EngA [Pelagibaca bermudensis HTCC2601] gi|114544512|gb|EAU47519.1| GTP-binding protein EngA [Roseovarius sp. HTCC2601] Length = 487 Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust. Identities = 197/471 (41%), Positives = 292/471 (61%), Gaps = 8/471 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +++AIVG PNVGKSTLFNRLV +++A+V + PG+TRD G+ + + F ++DTAG+ Sbjct: 1 MTFSLAIVGRPNVGKSTLFNRLVGRRLALVDDQPGVTRDLREGEGKLGDLRFTVIDTAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 D + S+ +M TE A++ A + LF+ID++ G+TP D LRK+ +I+ +NK Sbjct: 61 EDATDDSLPGRMRRLTERAVDMADVCLFMIDARVGVTPTDEIFAEILRKRAKHVILGANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + A E Y+L E + ISAEH G +L+ + + E Sbjct: 121 SEGSAADAGVLEAYALGLGEPLRISAEHGEGMPDLYGALQPLAD----GFAERAAEEAPE 176 Query: 181 NEESPKENITSEGKSSVKNIS--KPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 + S E ++ E S+ I+ KPL+IAVVGRPN GKSTL+N+++G RLLTG ++GIT Sbjct: 177 TDVSVDEEVSEEADESLPEITATKPLQIAVVGRPNAGKSTLVNKIIGEERLLTGPEAGIT 236 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RD++S+ W P+ IFDTAGMRK +R+ E LE+ +V +++V+ E +VLLDA IP Sbjct: 237 RDAISVRTEWGGVPMRIFDTAGMRKKARVQEKLEKLSVSDGLRAVKFAEVVVVLLDAAIP 296 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 FE+QDLRI D G AVV+A+NKWD+ +K L+DL+ + LPQ+ + T+S Sbjct: 297 FEQQDLRIADLAEREGRAVVIAVNKWDIEDEKQEKLRDLKESFERLLPQLRGAPLVTVSA 356 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 +TG GLD L ++++ ++W RI+T LN WL+ +PPP R +L+Y+TQ ++ Sbjct: 357 KTGRGLDRLQAAIMKAWEVWNRRISTGQLNRWLEGMVSSHPPPAPQGRRIKLRYMTQAKT 416 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIR--MCFQSSKNPY 467 PP F++ C+ P +P+SY RYL+N LR +F + G PIR M Q KNPY Sbjct: 417 RPPGFVVMCSRPQDMPDSYTRYLVNGLRESFDMPGTPIRLYMRGQGDKNPY 467 >gi|146340695|ref|YP_001205743.1| GTP-binding protein EngA [Bradyrhizobium sp. ORS278] gi|166224310|sp|A4YUE1|DER_BRASO RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|146193501|emb|CAL77517.1| GTP-binding protein, essential for cell growth [Bradyrhizobium sp. ORS278] Length = 456 Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust. Identities = 195/470 (41%), Positives = 288/470 (61%), Gaps = 19/470 (4%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +TIAI+G PNVGKSTLFNRLV +K+A+V + PG+TRDR G+A ++ + F I+DTAG+ Sbjct: 1 MSFTIAIIGRPNVGKSTLFNRLVGQKLALVDDMPGVTRDRREGEAKLHDLHFTIIDTAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 +G S+ +M +QTE AI A + F+ID++ G+TP D A F R+ + P+++++NK Sbjct: 61 DEGPKGSLTARMQEQTETAIALADALFFVIDARVGLTPADRAFADFARRADKPVLLLANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + + + E Y+L + ++ISAEH G EL+ + KI Sbjct: 121 SEGKHGELGAMESYALGLGDPIQISAEHGEGMGELYDALSKIVPPS-------------- 166 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 + ++ + S+P+R+A+VGRPN GKSTLIN LLG RLLT ++G TRD Sbjct: 167 -----DDEDDEREETDEERASRPIRVAIVGRPNAGKSTLINHLLGEERLLTSPEAGTTRD 221 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+++ WK IFDTAG+R+ SRI E LE+ +V ++++VR E +++LDA FE Sbjct: 222 SIAVEVEWKGRGFRIFDTAGLRRRSRIEEKLEKLSVADALRAVRFAEVVVLMLDAQNRFE 281 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 +QDLRI D V G A+VLA+NKWD++ + + LR A LPQI I +SG Sbjct: 282 EQDLRIADLVEREGRALVLAVNKWDLMEAQPGQISALRRDADHWLPQITGAPIVAVSGLM 341 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 GEG+D LM +++E +W R+ T+ LN W + NPPP + R +L YITQ ++ P Sbjct: 342 GEGIDRLMQAIVEAYAVWNRRVPTAALNRWFEGAIANNPPPAVSGRRLKLNYITQTKARP 401 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 PSF++FC+ + IP+SY RYL+N +R F L G P+R+ + NP+ K Sbjct: 402 PSFVLFCSRADAIPQSYLRYLVNSMRETFELPGTPVRITLREKANPFAHK 451 >gi|94495668|ref|ZP_01302248.1| Small GTP-binding protein domain [Sphingomonas sp. SKA58] gi|94425056|gb|EAT10077.1| Small GTP-binding protein domain [Sphingomonas sp. SKA58] Length = 456 Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust. Identities = 197/474 (41%), Positives = 291/474 (61%), Gaps = 23/474 (4%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ T+AIVG PNVGKSTLFNRLV KK+A+V + PG+TRDR G+A + G+ F I+DTAG Sbjct: 1 MLPTVAIVGRPNVGKSTLFNRLVGKKLALVDDQPGVTRDRREGEAHLLGLDFTIIDTAGY 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 D S+ +M QTE A++ + LFL+D++AGITP D I +LR+ + P+++V+NK Sbjct: 61 EDEDPQSLPGRMRIQTEAAVDNCDVALFLVDARAGITPLDEEIARWLREGDAPVVLVANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + R ++ E + L E + SAEH G ++L F+ P+ Sbjct: 121 AEGRASEGGVMEAFGLGLGEPIPFSAEHGQGMADL-------FQALLPHL---------- 163 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 + +E ++G S + PL++A+VGRPN GKSTLINRLLG NRLLTG ++GITRD Sbjct: 164 -DREEEEEPEADGDSEADMENAPLKLAIVGRPNAGKSTLINRLLGENRLLTGPEAGITRD 222 Query: 241 SVSISWNWKNH-----PIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDA 295 S+++ W+W + P+ + DTAGMRK +++ + LE+ V + +V E ++LLD+ Sbjct: 223 SIAVDWSWTSREGLERPVRLIDTAGMRKRAKVQDKLEKLAVSDGLNAVNFAEVVVLLLDS 282 Query: 296 TIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINT 355 T E QDLRI D V G A+V+ALNKWD V + L Q ++ L Q+ + I T Sbjct: 283 TRGLEAQDLRIADKVLEEGRALVIALNKWDTVDNGSALYQGIKQALSDGLAQVRGVPIMT 342 Query: 356 ISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQ 415 +S TG+GLDDL+ E W RI+T LN W ++ NPPP + +L+YITQ Sbjct: 343 VSAATGKGLDDLIHVAFETRTAWSQRISTGILNRWFERALEANPPPAPGGKRIKLRYITQ 402 Query: 416 IQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIK 469 ++ PP+F++F T +++PESY+RYL+N +R +P+R+ +S+KNP+ K Sbjct: 403 NKTRPPTFVLFGTRLDELPESYRRYLVNGIRKELGFGAVPVRLTLRSAKNPFGK 456 >gi|89068274|ref|ZP_01155684.1| GTP-binding protein EngA [Oceanicola granulosus HTCC2516] gi|89046191|gb|EAR52249.1| GTP-binding protein EngA [Oceanicola granulosus HTCC2516] Length = 488 Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust. Identities = 199/474 (41%), Positives = 300/474 (63%), Gaps = 16/474 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +T+AIVG PNVGKSTLFNRLV K++A+V + PG+TRD G+A + + F ++DTAG+ Sbjct: 1 MSFTLAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDLREGEARLADLRFTVIDTAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + + S+ +M TE A+ A + LFLID++ G+TP D LRKK+ +I+ +NK Sbjct: 61 EEATDESLQGRMRRLTERAVEMADVCLFLIDARTGVTPTDEVFADILRKKSAYVILGANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNH----PLEMIE 176 + R + E Y+L E + +SAEH G ++L + + ++ PL ++ Sbjct: 121 AEGRAGEGGLLEAYALGLGEPIGLSAEHGEGMADLLEALRPVAREHAGRAEEAAPLTDVD 180 Query: 177 -NNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQS 235 ++ EE P T ++PL++AVVGRPN GKSTLINR+LG RLLTG ++ Sbjct: 181 VSDDDGEELPDWRPTE---------ARPLQVAVVGRPNAGKSTLINRILGEERLLTGPEA 231 Query: 236 GITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDA 295 GITRDS+S++ W+ P+ +FDTAGMRK +++ + LE+ +V +++VR E +VLLD Sbjct: 232 GITRDSISLTLEWEGTPVRLFDTAGMRKRAKVQDKLEKLSVADGLRAVRFAEVVVVLLDV 291 Query: 296 TIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINT 355 IPFE+QDLRI D G AVV+A+NKWD+ +K + L++LR + + LPQ+ + T Sbjct: 292 EIPFEQQDLRIADLAEREGRAVVIAVNKWDLEGEKQDKLRELRAEFERLLPQLRGAPLVT 351 Query: 356 ISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQ 415 +S RTG GLD L ++L ++ W R+ T+ LN WL + +PPP R +L+Y+TQ Sbjct: 352 VSARTGRGLDRLHAAILRAHETWNRRVPTAALNRWLSEVVTAHPPPAPGGRRIKLRYVTQ 411 Query: 416 IQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCF--QSSKNPY 467 ++ PP F++ C+ P++IP+SY RYL+N LR +F + G PIR+ Q KNP+ Sbjct: 412 AKTRPPGFVVMCSHPDRIPDSYSRYLVNELRDDFDMPGTPIRLFLRGQGDKNPF 465 >gi|254439207|ref|ZP_05052701.1| GTPase, putative [Octadecabacter antarcticus 307] gi|198254653|gb|EDY78967.1| GTPase, putative [Octadecabacter antarcticus 307] Length = 496 Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust. Identities = 197/476 (41%), Positives = 302/476 (63%), Gaps = 17/476 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +T+AIVG PNVGKSTLFNRLV KK+A+V + PG+TRD G A + + F ++DTAG+ Sbjct: 1 MSFTLAIVGRPNVGKSTLFNRLVGKKLALVDDQPGVTRDLREGAARLGDLRFTVIDTAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + + S+ +M TE A+ A + LF+ D++ GI P D LRKK+ +I+ +NK Sbjct: 61 EEATDESLQGRMRALTERAVEMADVCLFMYDARMGIMPADEVFADILRKKSAKVILAANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKI---FKQKYPNHPLEMIEN 177 + R A E ++L E + +SAEH G SE++ V+ I F+++ ++ + Sbjct: 121 SEGRAADAGVIEGFNLGLGEPIRLSAEHGEGLSEMYDVLMPISDAFEERAAADAPDVDVD 180 Query: 178 NKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGI 237 + E + ++ SKPL+IAVVGRPN GKSTLIN++LG +RLLTG ++GI Sbjct: 181 VDEDNEEDGPRVPTK--------SKPLQIAVVGRPNAGKSTLINQILGEDRLLTGPEAGI 232 Query: 238 TRDSVSISWNWKNH----PIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLL 293 TRD++S+ +W P+ IFDTAG+RK +++ E LE+ +V +++V+ E ++L+ Sbjct: 233 TRDAISVQMDWGPESATVPVRIFDTAGIRKRAKVQEKLEKLSVADGLRAVKFAEVVVILI 292 Query: 294 DATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYI 353 D IPFE+QDLR+ D G AVVLA+NKWD+ +K L++L+ + + LPQ+ + Sbjct: 293 DVEIPFEQQDLRLADLAEREGRAVVLAVNKWDVEGEKQAKLKELKEQFTRLLPQLKGAPL 352 Query: 354 NTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYI 413 T+S +TG G+D L ++L+ +++W RITT+ LN WL +PPP R +++Y Sbjct: 353 VTVSAKTGRGIDRLQEAILKAHEVWNRRITTAQLNRWLMGMTESHPPPAPGGRRIKMRYA 412 Query: 414 TQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCF--QSSKNPY 467 TQ+++ PP F+I C+ P+ +PESY RYL+N LR++F + G PIR+ F Q+ KNPY Sbjct: 413 TQVKTRPPGFVIMCSHPDMLPESYSRYLVNGLRLDFDMPGTPIRLHFRSQADKNPY 468 >gi|254450380|ref|ZP_05063817.1| GTP-binding protein [Octadecabacter antarcticus 238] gi|198264786|gb|EDY89056.1| GTP-binding protein [Octadecabacter antarcticus 238] Length = 489 Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust. Identities = 197/473 (41%), Positives = 302/473 (63%), Gaps = 25/473 (5%) Query: 8 VGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNCS 67 +G PNVGKSTLFNRLV KK+A+V + PG+TRD G A + + F ++DTAG+ + + S Sbjct: 1 MGRPNVGKSTLFNRLVCKKLALVDDQPGVTRDLREGAARLGDLRFTVIDTAGLEEATDES 60 Query: 68 IAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQ 127 + +M TE A+ A + LF+ D++ GI P D LRKK+ +I+ +NK + R A Sbjct: 61 LQGRMRALTERAVEMADVCLFMYDARMGIMPADEVFADILRKKSAKVILAANKSEGRAAD 120 Query: 128 RNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKI---FKQKY----PNHPLEMIENNKR 180 E ++L E + +SAEH G SE++ V+ I F+++ P+ +E+ E+N+ Sbjct: 121 AGVIEGFNLGLGEPIRLSAEHGEGLSEMYDVLMPISDAFEERAAADAPDVDVEVNEDNE- 179 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 E+ P+ V +KPL+IAVVGRPN GKSTLIN++LG +RLLTG ++GITRD Sbjct: 180 -EDGPR----------VPTKAKPLQIAVVGRPNAGKSTLINQILGEDRLLTGPEAGITRD 228 Query: 241 SVSISWNWKNH----PIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDAT 296 ++S+ +W P+ IFDTAG+RK +++ E LE+ +V +++V+ E ++L+D Sbjct: 229 AISVQMDWGPEGATVPVRIFDTAGIRKRAKVQEKLEKLSVADGLRAVKFAEVVVILIDVE 288 Query: 297 IPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTI 356 IPFE+QDLR+ D G AVVLA+NKWD+ +K L++L+ + + LPQ+ + T+ Sbjct: 289 IPFEQQDLRLADLAEREGRAVVLAVNKWDVEGEKQAKLKELQEQFTRLLPQLKGAPLVTV 348 Query: 357 SGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQI 416 S +TG G+D L ++L+ +++W RITT+ LN WL +PPP R +++Y TQ+ Sbjct: 349 SAKTGRGIDRLQEAILKAHEVWNRRITTAQLNRWLMGMTEAHPPPAPGGRRIKMRYATQV 408 Query: 417 QSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCF--QSSKNPY 467 ++ PP F++ C+ P+ +PESY RYL+N LR++F + G PIR+ F QS KNPY Sbjct: 409 KTRPPGFVVMCSHPDMLPESYSRYLVNGLRLDFDMPGTPIRLHFRSQSDKNPY 461 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 46/174 (26%), Positives = 74/174 (42%), Gaps = 19/174 (10%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIIN----GVIFNIVDTAGI 60 IA+VG PN GKSTL N+++ + + G GITRD + Q V I DTAGI Sbjct: 194 IAVVGRPNAGKSTLINQILGEDRLLTGPEAGITRDAISVQMDWGPEGATVPVRIFDTAGI 253 Query: 61 ADGKNCSIAKQMNDQTEL----AINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIII 116 K + +++ + A+ A +++ LID + D + ++ +++ Sbjct: 254 R--KRAKVQEKLEKLSVADGLRAVKFAEVVVILIDVEIPFEQQDLRLADLAEREGRAVVL 311 Query: 117 VSNKMDT--------RIAQRNFYEIY-SLDFKEIVEISAEHDLGTSELHSVIFK 161 NK D + Q F + L +V +SA+ G L I K Sbjct: 312 AVNKWDVEGEKQAKLKELQEQFTRLLPQLKGAPLVTVSAKTGRGIDRLQEAILK 365 >gi|323138582|ref|ZP_08073650.1| ribosome-associated GTPase EngA [Methylocystis sp. ATCC 49242] gi|322396216|gb|EFX98749.1| ribosome-associated GTPase EngA [Methylocystis sp. ATCC 49242] Length = 466 Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust. Identities = 193/472 (40%), Positives = 301/472 (63%), Gaps = 11/472 (2%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +++AI+G PNVGKSTLFNRL KK+A+V + PG+TRDR G+A + + F I+DTAG+ Sbjct: 1 MSFSLAIIGRPNVGKSTLFNRLTGKKLALVDDRPGVTRDRREGEARLADLRFTIIDTAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 +G + ++ +M QTE AI A ILF+ID++ G+TP D +R+ P+I+++NK Sbjct: 61 EEGASATLEGRMRAQTENAILSADAILFVIDARVGVTPEDKYFADLVRRAGKPVILIANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN--N 178 + + + E ++L + V +SAEH G S L+ + + ++ E + N Sbjct: 121 AEGKAGEAGALEGFALGLGDPVPLSAEHGEGMSNLYDALREALPEETAEPEEEEADKEEN 180 Query: 179 KRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 ++E ++ +++KPLRIAVVGRPN GKSTLINR+LG +RLLTG ++GIT Sbjct: 181 LYDDEEDGSDL---------DVTKPLRIAVVGRPNAGKSTLINRILGEDRLLTGPEAGIT 231 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RDS+ + + W++ +++FDTAG+RK +++ + LE+ + ++++VR E ++L+D+TIP Sbjct: 232 RDSIGVDFVWRDRKMKLFDTAGLRKRAKVVDKLEKLSAADALRAVRFSEVVVLLIDSTIP 291 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 FEKQDL I D G A V+AL KWD++ D+ L LR +A + LPQ+ + +SG Sbjct: 292 FEKQDLTIADLAAREGRAFVIALGKWDLIEDRGAKLSLLREEAERLLPQVRGCPVVPVSG 351 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 TG+GLD LM +++ + +W RI T+ LN WL ++PPP + R +++Y+TQ +S Sbjct: 352 ATGQGLDRLMEAIVATHAVWNRRIATAKLNRWLLSAVEESPPPAVSGRRIKIRYMTQAKS 411 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 PP F+IF ++P SY+R+LIN LR F L G+PIR+ ++ NPY K Sbjct: 412 RPPHFVIFGNQLEELPTSYERFLINGLRKTFDLPGVPIRISRKAGDNPYAGK 463 >gi|307294125|ref|ZP_07573969.1| ribosome-associated GTPase EngA [Sphingobium chlorophenolicum L-1] gi|306880276|gb|EFN11493.1| ribosome-associated GTPase EngA [Sphingobium chlorophenolicum L-1] Length = 456 Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust. Identities = 197/475 (41%), Positives = 285/475 (60%), Gaps = 24/475 (5%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ T+AIVG PNVGKSTLFNRLV KK+A+V + PG+TRDR GQA + GV F I+DTAG Sbjct: 1 MLPTVAIVGRPNVGKSTLFNRLVGKKLALVDDQPGVTRDRREGQASLLGVDFTIIDTAGY 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 D ++ +M QT+ A+ A + LF++D++AGITP D I +LR+ + P+++++NK Sbjct: 61 EDEDPQTLPGRMRMQTQAAVENADVALFVVDARAGITPLDEEIARWLREGDAPVVLMANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + R E +SL + V SAEH G ++L + ++ Sbjct: 121 AEGRAGDDGVMEAFSLGLGDPVPFSAEHGQGLADLFQALLPYIDREE------EEGEEGE 174 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 +E+ E S PL++A+VGRPN GKSTLINRLLG NRLLTG ++GITRD Sbjct: 175 PDEADFE-------------SAPLKLAIVGRPNAGKSTLINRLLGENRLLTGPEAGITRD 221 Query: 241 SVSISWNW-----KNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDA 295 S+++ W W + P+ + DTAGMRK +++ + LE+ V + +V E ++LLD+ Sbjct: 222 SIAVDWQWTSPDGQERPVRLIDTAGMRKRAKVQDKLEKLAVSDGLNAVNFAEVVVLLLDS 281 Query: 296 TIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINT 355 T E QDLRI D V G A+V+ALNKWD V L Q ++ L QI + I T Sbjct: 282 TRGLEAQDLRIADKVLEEGRALVVALNKWDTVEHGSALYQGIKQALSDGLAQIRGVPIMT 341 Query: 356 ISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQ 415 +SG TG+GLDDL+ E W R++T LN W ++ NPPP + +L+YITQ Sbjct: 342 VSGATGKGLDDLIRVAFETRTAWSQRVSTGILNRWFERALEANPPPAPGGKRIKLRYITQ 401 Query: 416 IQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 ++ PP+F++F T +++PESY+RYL+N +R +P+R+ +S+KNPY K Sbjct: 402 NKTRPPTFVLFGTRLDELPESYRRYLVNGIRKELGFGAVPVRLTLRSAKNPYASK 456 >gi|154246486|ref|YP_001417444.1| GTP-binding protein EngA [Xanthobacter autotrophicus Py2] gi|238686724|sp|A7IIE4|DER_XANP2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|154160571|gb|ABS67787.1| small GTP-binding protein [Xanthobacter autotrophicus Py2] Length = 458 Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust. Identities = 194/467 (41%), Positives = 294/467 (62%), Gaps = 11/467 (2%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +++AIVG PNVGKSTLFNRLV KK+A+V + PG+TRDR G A + + F IVDTAG+ Sbjct: 1 MTFSLAIVGRPNVGKSTLFNRLVGKKLALVDDRPGVTRDRREGDARLGDLSFRIVDTAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + S+ +M QTE AI A ILF+ID++ G+TP D A +RK P+I+++NK Sbjct: 61 EEADAASLEGRMRAQTEAAIGHADAILFMIDARIGLTPTDRAFADLVRKCGKPVILLANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + R + E ++L + SAEH G S+L+ I ++ P E Sbjct: 121 SEGRGGEAGTLEAFALGLGTPLPFSAEHGEGLSDLYDAICDALPEQTRPEPEE------- 173 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 +E++ + + E + +P+++ V+GRPN GKSTLINRLLG +RLLTG ++GITRD Sbjct: 174 DEDADTDFVEEEADDKPR---RPIKVTVLGRPNAGKSTLINRLLGEDRLLTGPEAGITRD 230 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+S+ + +E+FDTAG+RK +RI + LE+ + ++++++ E ++L+DAT PFE Sbjct: 231 SISVEVTYAGAKLEVFDTAGLRKRARIEDKLEKLSAADALRAMKFAEVVVLLVDATHPFE 290 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 +QDLRI D V G A+V+ NK D+V+ + L+ LR + LPQ+ + I +SG Sbjct: 291 EQDLRIADLVAREGRALVIGYNKSDLVA-RGGLITRLREDVDRLLPQVKGVPIVPVSGLM 349 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G GLD L+ ++ +K+W R+ T+ LN +LQ+ +PPP + R +L+Y+TQ ++ P Sbjct: 350 GHGLDKLVAAISSAHKVWNKRVATNPLNRFLQQVTDNHPPPAVSGRRIKLRYMTQPKARP 409 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 PSF++FC+ + +PESY RYL+N LR F L G+PIR+ + NPY Sbjct: 410 PSFVLFCSRTDAVPESYIRYLVNGLRETFDLPGVPIRLTLREKGNPY 456 >gi|260428010|ref|ZP_05781989.1| ribosome-associated GTPase EngA [Citreicella sp. SE45] gi|260422502|gb|EEX15753.1| ribosome-associated GTPase EngA [Citreicella sp. SE45] Length = 487 Score = 399 bits (1024), Expect = e-109, Method: Compositional matrix adjust. Identities = 198/471 (42%), Positives = 296/471 (62%), Gaps = 8/471 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +++AIVG PNVGKSTLFNRLV +++A+V + PG+TRD G+ + + F ++DTAG+ Sbjct: 1 MTFSLAIVGRPNVGKSTLFNRLVGRRLALVDDQPGVTRDLREGEGKLGDLRFTVIDTAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + + S+ +M TE A++ A + LF+ID++ G+TP D LRK++ +I+ +NK Sbjct: 61 EEATDESLQGRMRRLTERAVDMADVCLFMIDARVGVTPTDEVFAEILRKRSKHVILAANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + A E Y L E + +SAEH G EL+SV+ + E E Sbjct: 121 SEGSAADAGVLEAYGLGLGEPLRLSAEHGEGMPELYSVLMPLSDGFAERAAEEAPETEVE 180 Query: 181 NEESPKENITSEGKSSVKNIS--KPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 E ++I + ++ I+ KPL+IAVVGRPN GKSTLIN++LG +RLLTG ++GIT Sbjct: 181 LSEEDGDDIDT----ALPEITDKKPLQIAVVGRPNAGKSTLINKILGEDRLLTGPEAGIT 236 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RD++S+ +W P+ IFDTAGMRK ++I E LE+ +V +++V+ E +VLLDA IP Sbjct: 237 RDAISVRLDWDGTPMRIFDTAGMRKRAKIQEKLEKLSVSDGLRAVKFAEVVVVLLDAAIP 296 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 FE+QDLRI D G AVV+A+NKWD+ K L+DL+ + LPQ+ + T+S Sbjct: 297 FEQQDLRIADLAEREGRAVVVAVNKWDVEEHKQEKLRDLKEAFDRLLPQLRGAPLVTVSA 356 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 +TG GLD L ++L+ ++W R++T LN WL+ +PPP + +L+Y+TQ ++ Sbjct: 357 KTGRGLDRLNAAILKAWEIWNRRVSTGQLNRWLEGMVSSHPPPAPQGKRIKLRYMTQAKT 416 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIR--MCFQSSKNPY 467 PP F++ C+ P+K+P+SY RYL+N LR F + G PIR M Q +NPY Sbjct: 417 RPPGFVVMCSHPDKMPDSYTRYLVNGLREAFDMPGTPIRLYMRGQGDRNPY 467 >gi|75676210|ref|YP_318631.1| GTP-binding protein EngA [Nitrobacter winogradskyi Nb-255] gi|123613178|sp|Q3SR12|DER_NITWN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|74421080|gb|ABA05279.1| Small GTP-binding protein [Nitrobacter winogradskyi Nb-255] Length = 455 Score = 398 bits (1023), Expect = e-109, Method: Compositional matrix adjust. Identities = 194/470 (41%), Positives = 288/470 (61%), Gaps = 20/470 (4%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +TIAI+G PNVGKSTLFNRLV +K+A+V + PG+TRDR GQA + + F ++DTAG+ Sbjct: 1 MSFTIAIIGRPNVGKSTLFNRLVGQKLALVDDEPGVTRDRREGQARLGDLDFTVIDTAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 +G S+ +M +QTE AI A ++F+ D++AG+TP D + F R+ + P+++V+NK Sbjct: 61 DEGPRGSLTARMQEQTEAAIAAADALMFVFDARAGLTPTDRSFADFARRADKPVVLVANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + R E Y+L + V +SAEHD G S+L+ + + P E ++ Sbjct: 121 SEGRHGDAGALESYALGLGDPVGVSAEHDEGMSDLYDALRSVM-------PEPAEEVDEE 173 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 P ++S+P+R+A+VGRPN GKST+IN LL RLLT ++G TRD Sbjct: 174 EIVEP-------------DMSRPIRVAIVGRPNAGKSTVINYLLSEERLLTSPEAGTTRD 220 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+S+ NWK IFDTAG+R+ SRI LE+ +V ++++VR E ++++DA FE Sbjct: 221 SISVELNWKGRDFRIFDTAGLRRRSRIEAKLEKLSVADTLRAVRFAEAVVLMMDAQNRFE 280 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 +QDLRI D + G A+V+A+NKWD++ + LR LPQI + ISG T Sbjct: 281 EQDLRIADLIEREGRALVIAVNKWDLMKGGSARIASLRNDVDHWLPQIRGAPVVAISGLT 340 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 GEG+D LM+++ +W R+ T+ LN W Q+ +PPP + R +L Y TQ ++ P Sbjct: 341 GEGIDRLMIAIQTAYAVWNRRVATALLNRWFQQAVAASPPPAVSGRRLKLNYATQTKARP 400 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 PSF++FC+ + +PESY RYL+N LR F L+G PIR+ + NP+ K Sbjct: 401 PSFVVFCSRADAVPESYLRYLVNSLRETFDLAGTPIRITLREKANPFAHK 450 >gi|146278196|ref|YP_001168355.1| GTP-binding protein EngA [Rhodobacter sphaeroides ATCC 17025] gi|166225848|sp|A4WUI6|DER_RHOS5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|145556437|gb|ABP71050.1| small GTP-binding protein [Rhodobacter sphaeroides ATCC 17025] Length = 487 Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust. Identities = 204/475 (42%), Positives = 303/475 (63%), Gaps = 9/475 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +T+AIVG PNVGKSTLFNRLV K++A+V + PG+TRD G A + + F ++DTAG+ Sbjct: 1 MSFTLAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDLREGDARLIDLRFTVIDTAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + + S+ +M TE A+ A + LFLID + G+TP D LRKKN +I+ NK Sbjct: 61 EEVTDDSLQGRMRRLTERAVEMADVCLFLIDGRVGVTPSDEVFADILRKKNAHVILGVNK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKI---FKQKYPNHPLEMIEN 177 + R E +SL E V +SAEH G +L+ ++ I F ++ +++ Sbjct: 121 AEGRAGDAGAIEAWSLGLGEPVRLSAEHGEGMDDLYHILRPIAEGFAERAAAD-APVVDV 179 Query: 178 NKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGI 237 + EE+ E K +VK +PL+IAV+GRPN GKSTLIN+++G +RLLTG ++GI Sbjct: 180 DVSEEEADLEADPDAHKPTVK---RPLQIAVIGRPNAGKSTLINKIIGEDRLLTGPEAGI 236 Query: 238 TRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATI 297 TRD++S+ W+ PI IFDTAGMRK +RI++ LE+ +V +++VR E +VLLD I Sbjct: 237 TRDAISVRSEWQGTPIRIFDTAGMRKKARISDKLEKLSVADGLRAVRFAEVVVVLLDVEI 296 Query: 298 PFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTIS 357 PFE+QDLRI D G AVV+A+NKWD+ +K L +L+ + LPQ+ + T+S Sbjct: 297 PFEQQDLRIADFAETEGRAVVVAVNKWDLEGEKQEKLAELKEMFDRLLPQLRGAPLVTVS 356 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 +TG GLD L ++L+ + +W RITT+ LNSWL +PPP R +L+Y+TQ++ Sbjct: 357 AKTGRGLDRLHAAILKAHDIWNRRITTARLNSWLGAMVEAHPPPAPGGRRIKLRYMTQVK 416 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCF--QSSKNPYIKK 470 + PP F++ C+ P+++P+SY+RYL+N LR +F + G PIR+ Q KNP+ ++ Sbjct: 417 TRPPGFVVMCSHPDEMPDSYRRYLVNGLRDHFDMPGTPIRLTMRGQGDKNPFKER 471 >gi|85716391|ref|ZP_01047363.1| GTP-binding protein EngA [Nitrobacter sp. Nb-311A] gi|85696748|gb|EAQ34634.1| GTP-binding protein EngA [Nitrobacter sp. Nb-311A] Length = 458 Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust. Identities = 186/470 (39%), Positives = 286/470 (60%), Gaps = 17/470 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +TIAI+G PNVGKSTLFNRLV +++A+V + PG+TRDR GQA + + F ++DTAG+ Sbjct: 1 MSFTIAIIGRPNVGKSTLFNRLVGQRLALVDDEPGVTRDRREGQARLGDLDFTVIDTAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 +G S+ +M +QTE AI A ++F+ D++AG+TP D + F R+ + P+++V+NK Sbjct: 61 DEGPRGSLTARMQEQTETAIAAADALMFVFDARAGLTPTDRSFADFARRADKPVVLVANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + R E Y+L + + +SAEH G +L+ + + + Sbjct: 121 SEGRHGDAGALESYALGLGDPIGVSAEHGEGMGDLYDALRAVMPEPA------------- 167 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 EE+ ++ G+ + +P+R+A+VGRPN GKST+IN LL +RLLT ++G TRD Sbjct: 168 -EEADADDSIESGEDVSR---RPIRVAIVGRPNAGKSTVINYLLNEDRLLTSPEAGTTRD 223 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+S+ +W IFDTAG+R+ SRI E LE+ +V ++++VR E ++++DA FE Sbjct: 224 SISVELDWHGRDFRIFDTAGLRRRSRIEEKLEKLSVADTLRAVRFAEVVVLMMDAQNRFE 283 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 +QDLRI D + G A+V+A+NKWD++ + LR A LPQ+ + +SG T Sbjct: 284 EQDLRIADLIEREGRALVIAVNKWDLMQGGSARIASLRNDADHWLPQVKGAPVVALSGLT 343 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 GEG+ LM ++ +W R+ T+ LN W Q+ +PPP + R +L Y TQ ++ P Sbjct: 344 GEGVGGLMTAIQAAYAVWNRRVPTAALNRWFQQAIAASPPPAVSGRRLKLNYATQTKARP 403 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 PSF++FC+ + +PESY RYL+N LR F L G PIR+ + NP+ K Sbjct: 404 PSFVVFCSRADAVPESYLRYLVNSLRETFDLPGTPIRITLREKANPFAHK 453 >gi|167646460|ref|YP_001684123.1| GTP-binding protein EngA [Caulobacter sp. K31] gi|167348890|gb|ABZ71625.1| small GTP-binding protein [Caulobacter sp. K31] Length = 602 Score = 396 bits (1017), Expect = e-108, Method: Compositional matrix adjust. Identities = 184/469 (39%), Positives = 286/469 (60%), Gaps = 24/469 (5%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +AIVG PNVGKSTLFNRL +K+A+V + PG+TRDR + + + ++DTAG Sbjct: 1 MPLKLAIVGRPNVGKSTLFNRLAGRKLALVDDQPGVTRDRRFAHGRLGDLDLELIDTAGF 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 D + S+ +M QTELAI+EA + L + D++ G+TP D LRK+N P+++ +NK Sbjct: 61 EDVTDESLEARMRAQTELAIDEADVSLLVFDAREGLTPLDKTFAEILRKRNKPVLVAANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + + E SL E ++IS EH G +EL++ + I ++ E+ ++ Sbjct: 121 SEGKAGDHGAAEANSLGLGEPIQISGEHGEGMAELYAALIAIAPEELQGEHDELGDD--- 177 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 KP++IA+VGRPN GKSTLINRL+G RLLTG ++GITRD Sbjct: 178 ---------------------KPIKIAIVGRPNAGKSTLINRLIGEQRLLTGPEAGITRD 216 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+S+ W+W + + DTAG+RK +++ E LE+ + +++S+ E ++++DAT PFE Sbjct: 217 SISVDWDWGGRKVRLVDTAGLRKKAKVNEKLEKLSTGDTIRSITFAEVVLLIMDATHPFE 276 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 QDL+I D G VV L KWD+V D+ L+ A + LPQ+ + +SG T Sbjct: 277 TQDLQIADLAEREGRCVVFVLAKWDLVEDQAATLKGFVEHAERMLPQLRGTPVVALSGET 336 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G+G+D LM +VL+ ++ W T++ T LN WLQ ++PPP++ + + KY+ QI++ P Sbjct: 337 GKGVDKLMPAVLKSHRDWSTKVKTRDLNDWLQMAMQRHPPPSVGGKRIKPKYMAQIKARP 396 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIK 469 P+F++F + +++PE Y+RYLIN LR +F L G+P+R+ +S NPY + Sbjct: 397 PTFVLFSSRADQMPEQYRRYLINSLRESFDLPGVPLRITIKSGANPYAE 445 >gi|23015371|ref|ZP_00055149.1| COG1160: Predicted GTPases [Magnetospirillum magnetotacticum MS-1] Length = 464 Score = 395 bits (1015), Expect = e-108, Method: Compositional matrix adjust. Identities = 194/471 (41%), Positives = 300/471 (63%), Gaps = 10/471 (2%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +T+AI+G PNVGKSTLFNRLV K++A+V + PG+TRDR G+A + G+ F +VDTAG Sbjct: 1 MPFTVAIIGRPNVGKSTLFNRLVGKRLAIVHDLPGVTRDRREGRASLLGMEFQVVDTAGF 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 D SI +M QT++A++EA + L LID++AG+TP D LR+ P+I+V+NK Sbjct: 61 EDDTGDSIEARMRHQTDMAVSEADVALLLIDARAGVTPLDRHFADHLRRLPTPVILVANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + + YE Y L E V +SAEH G EL F+ + +H ++ Sbjct: 121 CEGKAGMPGLYESYGLGMGEPVAVSAEHGEGMYEL----FEALR----DHAIKAGALTP- 171 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 + + P+ T EG+ + ++PL +A+VGRPNVGKSTL N+LLG +RLLTG ++G+TRD Sbjct: 172 DGDDPEPEETFEGEDGEPDPTRPLTMAIVGRPNVGKSTLGNQLLGQDRLLTGPEAGLTRD 231 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 ++++ W + +++ DTAG+RK ++I +++E+ +V +++++R E ++++DA + Sbjct: 232 AIAVEWEHRGRRMKLVDTAGLRKKAQIYDAIEKLSVGNTIETIRMSEVVVLVMDAAAILD 291 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 KQDL I V G A+VLA+NKWD+V D L+ L+ + +LPQ + T+S T Sbjct: 292 KQDLTIARMVVEEGRALVLAINKWDVVDDPQTALKRLKDRLETSLPQAKGVTTVTLSALT 351 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTI-FNRYNRLKYITQIQSS 419 G+G++ LM VL+ W RI T+ LN WL+ ++PPP + R +++Y+TQ ++ Sbjct: 352 GKGIERLMDGVLDTWTNWNRRIPTAQLNRWLEDMIERHPPPALPGGRRYKIRYMTQAKAR 411 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 PP+F++F T P ++PESY RYL+N LR F L G+PIR+ + KNPY K Sbjct: 412 PPTFVLFATRPEQLPESYSRYLVNGLREAFDLPGVPIRLYVRGGKNPYADK 462 >gi|86138474|ref|ZP_01057048.1| GTP-binding protein EngA [Roseobacter sp. MED193] gi|85824999|gb|EAQ45200.1| GTP-binding protein EngA [Roseobacter sp. MED193] Length = 489 Score = 395 bits (1015), Expect = e-108, Method: Compositional matrix adjust. Identities = 196/472 (41%), Positives = 296/472 (62%), Gaps = 8/472 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +T+AIVG PNVGKSTLFNRLV KK+A+V + PG+TRD G+A + + F ++DTAG+ Sbjct: 1 MSFTLAIVGRPNVGKSTLFNRLVGKKLALVDDQPGVTRDLREGEARLGDLRFTVIDTAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 D + S+ +M TE A++ A + LF+ID++ G+TP D LR+K+ +I+ +NK Sbjct: 61 EDVTDNSLEGRMRRLTERAVDMADICLFMIDARTGVTPVDEMFAEILRRKSAHVILAANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKI---FKQKYPNHPLEMIEN 177 + A E Y L E + +S EH G ++L S + + F ++ +H + + Sbjct: 121 AEGNAADAGVLEAYGLGLGEPLRLSGEHGEGMADLFSELAPLADQFAEEAVDHSPVVDLD 180 Query: 178 NKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGI 237 +++ + S V KPL++AVVGRPN GKSTLIN++LG +RLLTG ++GI Sbjct: 181 LDEDDDW---DEDSAPPVPVPTREKPLQVAVVGRPNAGKSTLINKILGEDRLLTGPEAGI 237 Query: 238 TRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATI 297 TRD++S+ +W P+ IFDTAGMRK +++ E LE+ +V +++V+ E ++LLDA I Sbjct: 238 TRDAISLQIDWSGTPMRIFDTAGMRKKAKVLEKLEKLSVSDGLRAVKFAEVVVILLDAEI 297 Query: 298 PFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTIS 357 PFE+QDLRI D G AVV+A+NKWD+ +K L L+ + LPQ+ + T+S Sbjct: 298 PFEQQDLRIADLAEREGRAVVVAVNKWDVEDNKQEKLAALKEAFGRLLPQLRGAPLVTVS 357 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 +TG+GLD L +V+ +W RI T+ LN WL Q+PPP + +L+Y+TQ + Sbjct: 358 AKTGKGLDRLHAAVMRAYDVWNRRIPTAALNRWLTGMLEQHPPPAPQGKRIKLRYMTQAK 417 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCF--QSSKNPY 467 + PP F++ C+ P+KIP SY RYL+N LR +F + G PIR+ Q+ +NP+ Sbjct: 418 TRPPGFVVMCSHPDKIPASYTRYLVNGLRQDFDMPGTPIRLTMRGQNDQNPF 469 >gi|148556031|ref|YP_001263613.1| GTP-binding protein EngA [Sphingomonas wittichii RW1] gi|148501221|gb|ABQ69475.1| small GTP-binding protein [Sphingomonas wittichii RW1] Length = 454 Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust. Identities = 185/469 (39%), Positives = 297/469 (63%), Gaps = 26/469 (5%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AIVG PNVGKSTLFNRLV KK+A+V + PG+TRDR G A + G+ F ++DTAG Sbjct: 6 TVAIVGRPNVGKSTLFNRLVGKKLALVDDRPGVTRDRREGDATLIGLDFRVIDTAGFETD 65 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 ++ +M QT+ A+ EA + LF++D++AG+TP D + +LR ++ P+++V+NK + Sbjct: 66 DPQTLPGRMRAQTQAAVREADVALFMVDARAGVTPLDEEVALWLRGEDTPVVLVANKAEG 125 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + +E Y L + + SAEH G + +F+ P+ IE R+E+ Sbjct: 126 KATEAGVHEAYGLGLGDPIPFSAEHGEG-------LVDLFEALRPH-----IE---RDED 170 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 E EG+ ++ + PL++A+VGRPN GKSTLIN++LG R++TG ++GITRDS++ Sbjct: 171 QDGE----EGED--EDAAGPLKLAIVGRPNAGKSTLINKILGEQRMITGPEAGITRDSIA 224 Query: 244 ISWNWKN-----HPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 I W+W PI + DTAGMRK +++ + LE+ +V +++V E ++LLDAT+ Sbjct: 225 IDWDWHAPDGTVRPIRLIDTAGMRKRAKVQDKLEKLSVADGLRAVDFAEVVVLLLDATLG 284 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 E QDLRI D V G A+++AL+KWD+ +D L Q +RT + L Q+ + + T+SG Sbjct: 285 LEAQDLRIADKVLQEGRALIIALSKWDVAADPPALFQGVRTALDEGLAQVKGLPLLTVSG 344 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 +G G+D L+ + E + W R++T+ LN W ++ NPPP + +L+Y+TQ ++ Sbjct: 345 VSGRGVDQLLQAAHETREAWSQRVSTAKLNRWFERAIEANPPPAPGGKRIKLRYLTQART 404 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 PPSF++F T +++PESY+RYL+N +R + +P+R+ ++ KNP+ Sbjct: 405 RPPSFVLFGTRVDQLPESYRRYLVNGIRRDLGFGSVPVRLTLRAPKNPF 453 >gi|294012485|ref|YP_003545945.1| GTP-binding protein EngA [Sphingobium japonicum UT26S] gi|292675815|dbj|BAI97333.1| GTP-binding protein EngA [Sphingobium japonicum UT26S] Length = 456 Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust. Identities = 194/475 (40%), Positives = 283/475 (59%), Gaps = 24/475 (5%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ T+AIVG PNVGKSTLFNRLV KK+A+V + PG+TRDR GQA + GV F I+DTAG Sbjct: 1 MLPTVAIVGRPNVGKSTLFNRLVGKKLALVDDQPGVTRDRREGQANLLGVDFTIIDTAGY 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 D ++ +M QT+ A+ A + LF++D++AGITP D I +LR+ + P+++++NK Sbjct: 61 EDEDPQTLPGRMRMQTQAAVENADVALFVVDARAGITPLDEEIARWLREGDAPVVLMANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + + E +SL + V SAEH G ++L + ++ Sbjct: 121 AEGKAGDDGVMEAFSLGLGDPVPFSAEHGQGLADLFQALLPYIDRE-------------- 166 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 +E S PL++A+VGRPN GKSTLINRLLG NRLLTG ++GITRD Sbjct: 167 -----EEEEEEGEPDEADFESAPLKLAIVGRPNAGKSTLINRLLGENRLLTGPEAGITRD 221 Query: 241 SVSISWNWKN-----HPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDA 295 S+++ W W + P+ + DTAGMRK +++ + LE+ V + +V E ++LLD+ Sbjct: 222 SIAVDWQWTDPDGNERPVRLIDTAGMRKRAKVQDKLEKLAVSDGLNAVNFAEVVVLLLDS 281 Query: 296 TIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINT 355 T E QDLRI D V G A+V+ALNKWD V + L Q ++ L QI + I T Sbjct: 282 TRGLEAQDLRIADKVIEEGRALVVALNKWDTVENGSALYQGIKQALSDGLAQIRGVPIMT 341 Query: 356 ISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQ 415 +S TG+GLDDL+ E W R++T LN W ++ NPPP + +L+YITQ Sbjct: 342 VSAATGKGLDDLIRVAFETRTAWSQRVSTGILNRWFERALEANPPPAPGGKRIKLRYITQ 401 Query: 416 IQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 ++ PP+F++F T +++PESY+RYL+N +R +P+R+ +S+KNPY K Sbjct: 402 NKTRPPTFVLFGTRLDELPESYRRYLVNGIRKELGFGAVPVRLTLRSAKNPYATK 456 >gi|16125900|ref|NP_420464.1| GTP-binding protein EngA [Caulobacter crescentus CB15] gi|221234663|ref|YP_002517099.1| GTP-binding protein EngA [Caulobacter crescentus NA1000] gi|13423060|gb|AAK23632.1| GTP-binding protein [Caulobacter crescentus CB15] gi|220963835|gb|ACL95191.1| GTP-binding protein [Caulobacter crescentus NA1000] Length = 588 Score = 392 bits (1008), Expect = e-107, Method: Compositional matrix adjust. Identities = 182/467 (38%), Positives = 281/467 (60%), Gaps = 25/467 (5%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +AIVG PNVGKSTLFNRL KK+A+V + PG+TRDR Y + + ++DTAG Sbjct: 1 MPLKLAIVGRPNVGKSTLFNRLAGKKLAIVDDQPGVTRDRRYASGSLGDLELELIDTAGF 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 D + S+ +M QTE AI EA + LF+ DS+ G+T D + LRK++ P+I+ +NK Sbjct: 61 EDVDDSSLEARMRAQTEAAIEEADVSLFVFDSREGVTALDEVFAAILRKRDKPVIVAANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + + + E + L E + IS EH G +EL++ + Q +E Sbjct: 121 AEGKAGEAGAGEAFRLGLGEPIPISGEHGEGMAELYAALLAFEPQ---------VEAGDD 171 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 ++ SKP+RIA++GRPN GKSTL+NRLLG +RLLTG ++GITRD Sbjct: 172 EDDD----------------SKPIRIAIIGRPNAGKSTLVNRLLGEDRLLTGPEAGITRD 215 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+S+ W W I + DTAG+R+ +++ + LE+ + +++++ E ++++DAT PFE Sbjct: 216 SISVDWEWDGRKIRLVDTAGLRRKAKVQDKLEKLSTADTIRAITFAEVVLLVMDATHPFE 275 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 QDL+I D G AVV L KWD++ D+ L R A + LPQ+ + +SG T Sbjct: 276 IQDLQIADLAEREGRAVVFVLAKWDLIEDQAAHLTAFREHAERMLPQLRGAPVVALSGET 335 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G+G+ LM +V++ ++ W T++ T LN WLQ ++PPP + R + KY+ Q ++ P Sbjct: 336 GKGIGHLMPAVIKTHRDWSTKVKTRDLNDWLQMAMQRHPPPAVSGRRVKPKYMAQTKARP 395 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 P+F++F + +++P+ Y+RYLIN LR +F L G+P+R+ +S NPY Sbjct: 396 PTFVLFSSRADQMPDHYRRYLINSLRESFDLPGVPLRITIKSGANPY 442 >gi|77463250|ref|YP_352754.1| GTP-binding protein EngA [Rhodobacter sphaeroides 2.4.1] gi|126462124|ref|YP_001043238.1| GTP-binding protein EngA [Rhodobacter sphaeroides ATCC 17029] gi|221639113|ref|YP_002525375.1| GTP-binding protein EngA [Rhodobacter sphaeroides KD131] gi|332558128|ref|ZP_08412450.1| GTP-binding protein Der [Rhodobacter sphaeroides WS8N] gi|123592083|sp|Q3J2Y1|DER_RHOS4 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|166225847|sp|A3PJF0|DER_RHOS1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|254783164|sp|B9KRT2|DER_RHOSK RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|77387668|gb|ABA78853.1| Probable GTP-binding protein [Rhodobacter sphaeroides 2.4.1] gi|126103788|gb|ABN76466.1| small GTP-binding protein [Rhodobacter sphaeroides ATCC 17029] gi|221159894|gb|ACM00874.1| GTP-binding protein engA [Rhodobacter sphaeroides KD131] gi|332275840|gb|EGJ21155.1| GTP-binding protein Der [Rhodobacter sphaeroides WS8N] Length = 487 Score = 392 bits (1008), Expect = e-107, Method: Compositional matrix adjust. Identities = 201/475 (42%), Positives = 301/475 (63%), Gaps = 9/475 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +T+AIVG PNVGKSTLFNRLV K++A+V + PG+TRD G A + + F ++DTAG+ Sbjct: 1 MSFTLAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDLREGDARLIDLRFTVIDTAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + + S+ +M TE A+ A + LFLID + G+TP D LR+KN +I+ NK Sbjct: 61 EEVTDDSLQGRMRRLTERAVEMADVCLFLIDGRVGVTPSDEVFADILRRKNAHVILGVNK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKI---FKQKYPNHPLEMIEN 177 + R E +SL E + +SAEH G +L+ ++ I F ++ +++ Sbjct: 121 AEGRAGDGGAIEAWSLGLGEPIRLSAEHGEGMDDLYHILRPIAEGFAERAAAD-APVVDV 179 Query: 178 NKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGI 237 + EE+ E K +VK+ PL+IAV+GRPN GKSTLIN+++G +RLLTG ++GI Sbjct: 180 DVPEEEADLEADPEAHKPTVKH---PLQIAVIGRPNAGKSTLINKIIGEDRLLTGPEAGI 236 Query: 238 TRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATI 297 TRD++S+ W PI IFDTAGMRK +RI++ LE+ +V +++VR E +VLLD I Sbjct: 237 TRDAISVRSEWHGTPIRIFDTAGMRKKARISDKLEKLSVADGLRAVRFAEVVVVLLDVEI 296 Query: 298 PFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTIS 357 PFE+QDLRI D G AVV+A+NKWD+ +K L +L+ + LPQ+ + T+S Sbjct: 297 PFEQQDLRIADFAETEGRAVVVAVNKWDLEGEKQEKLAELKEMFERLLPQLRGAPLVTVS 356 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 +TG GLD L ++L + +W RITT+ LN+WL +PPP R +L+Y+TQ++ Sbjct: 357 AKTGRGLDRLHAAILRAHDIWNRRITTARLNTWLGAMVEAHPPPAPGGRRIKLRYMTQVK 416 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCF--QSSKNPYIKK 470 + PP F++ C+ P+++P+SY+RYL+N LR +F + G PIR+ Q KNP+ ++ Sbjct: 417 TRPPGFVVMCSHPDEMPDSYRRYLVNGLRDHFDMPGTPIRLTMRGQGDKNPFKER 471 >gi|299133685|ref|ZP_07026879.1| ribosome-associated GTPase EngA [Afipia sp. 1NLS2] gi|298591521|gb|EFI51722.1| ribosome-associated GTPase EngA [Afipia sp. 1NLS2] Length = 461 Score = 392 bits (1007), Expect = e-107, Method: Compositional matrix adjust. Identities = 190/471 (40%), Positives = 287/471 (60%), Gaps = 16/471 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +TIAI+G PNVGKSTLFNRLV +K+A+V + PG+TRDR G + + F I+DTAG+ Sbjct: 1 MSFTIAIIGRPNVGKSTLFNRLVGQKLALVDDQPGVTRDRREGLGRLGDLEFTIIDTAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 G S+ +M +QTE AI A ++F+ID++AG+TP D A F R+ N P+++++NK Sbjct: 61 DSGPRGSLTARMQEQTETAIAAADALMFVIDARAGLTPNDRAFADFARRANKPVLLLANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + + + E Y+L + + ISAEH G +L+ + ++ + E + Sbjct: 121 SEGKQGEAGIAESYALGLGDPIGISAEHGEGLGDLYDALRELMPDPIDDEADEDDPDGAE 180 Query: 181 N-EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITR 239 + E+ P ++P+R+AV+GRPN GKSTLIN LLG RLLT ++G TR Sbjct: 181 DFEDDP---------------TRPIRVAVLGRPNAGKSTLINHLLGEERLLTSPEAGTTR 225 Query: 240 DSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPF 299 DS+++ WK + +FDTAG+R+ SRI + LE+ +V ++++VR E ++++DA F Sbjct: 226 DSIAVDVEWKGRKLRVFDTAGLRRRSRIDDKLEKLSVSDALRAVRFAEVVVLVVDAQNRF 285 Query: 300 EKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGR 359 E+QDLR+ D V G A+VLA+NKWD+V + + LR A LPQ+ + ISG Sbjct: 286 EEQDLRLADLVEREGRALVLAVNKWDLVERAPSAIGKLRETADHLLPQVRGAPVVAISGL 345 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 GEG+D L+ ++ + W RI TS LN W ++ NPPP + R +L Y+TQ ++ Sbjct: 346 MGEGIDRLIGAIEKAYATWNKRIPTSALNRWFEQATRNNPPPAVSGRRLKLNYVTQTKAR 405 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 PPSF++FC+ + +P+SY RYL N LR F L G P+R+ + NP+ K Sbjct: 406 PPSFVVFCSRADAVPQSYLRYLTNTLREAFDLPGTPVRITLREKANPFAHK 456 >gi|209885506|ref|YP_002289363.1| small GTP-binding protein domain [Oligotropha carboxidovorans OM5] gi|209873702|gb|ACI93498.1| small GTP-binding protein domain [Oligotropha carboxidovorans OM5] Length = 469 Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust. Identities = 193/470 (41%), Positives = 292/470 (62%), Gaps = 16/470 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +TIAI+G PNVGKSTLFNRLV +K+A+V + PG+TRDR GQ + + F I+DTAG+ Sbjct: 11 MSFTIAIIGRPNVGKSTLFNRLVGQKLALVDDQPGVTRDRREGQGRLGDLDFTIIDTAGL 70 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 G S+ +M +QTE AI A ++F+ID++AG+TP D A F R+ N P+++++NK Sbjct: 71 DSGPRGSLTARMQEQTEAAIAAADALMFVIDARAGLTPNDRAFADFARRANKPVLLLANK 130 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + R + E Y+L + + ISAEH G +L+ + + + P H E+ E++ Sbjct: 131 SEGRHGEVGIAESYALGLGDPIGISAEHGEGLGDLYDALKDLMPE--PIHDDELDEDDA- 187 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 + + S+P+R+AV+GRPN GKSTLIN LLG RLLT ++G TRD Sbjct: 188 -------------EGEEIDPSRPIRVAVLGRPNAGKSTLINYLLGEERLLTSPEAGTTRD 234 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+++ WK + +FDTAG+R+ SRI + LE+ +V ++++VR E ++++DA FE Sbjct: 235 SIAVDVEWKGRKLRVFDTAGLRRRSRIDDKLEKLSVSDALRAVRFAEVVVLVMDAQNRFE 294 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 +QDLR+ D V G A+VLA+NKWD++ + LR A + LPQ+ + +SG Sbjct: 295 EQDLRLADLVEREGRAIVLAVNKWDLIERTPGAIGALRESADRLLPQLRGAPLVAVSGLM 354 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 GEG+D L+ ++ + W R++TS LN W ++ NPPP + R +L Y+TQ ++ P Sbjct: 355 GEGIDRLIAAIEMAHGTWNKRVSTSALNRWFEQAVRANPPPAVSGRRLKLNYVTQTKARP 414 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 PSF++FC+ + +P+SY RYL N LR FSL G PIR+ + NP+ K Sbjct: 415 PSFVVFCSRADAVPQSYLRYLTNSLREAFSLPGTPIRITLREKANPFAHK 464 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 50/174 (28%), Positives = 76/174 (43%), Gaps = 11/174 (6%) Query: 194 KSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPI 253 ++ I IA++GRPNVGKSTL NRL+G L Q G+TRD + Sbjct: 3 RARADGIDMSFTIAIIGRPNVGKSTLFNRLVGQKLALVDDQPGVTRDRREGQGRLGDLDF 62 Query: 254 EIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNT 313 I DTAG+ R SL + +++ ++ + + ++DA D D Sbjct: 63 TIIDTAGLDSGPR--GSLTARMQEQTEAAIAAADALMFVIDARAGLTPNDRAFADFARRA 120 Query: 314 GHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDL 367 V+L NK + ++ + + + A+ IG IS GEGL DL Sbjct: 121 NKPVLLLANKSEGRHGEVGIAE---SYALGLGDPIG------ISAEHGEGLGDL 165 >gi|84517346|ref|ZP_01004700.1| GTP-binding protein EngA [Loktanella vestfoldensis SKA53] gi|84508826|gb|EAQ05289.1| GTP-binding protein EngA [Loktanella vestfoldensis SKA53] Length = 485 Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust. Identities = 204/481 (42%), Positives = 303/481 (62%), Gaps = 21/481 (4%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +T+AIVG PNVGKSTLFNRLV KK+A+V + PG+TRD G+ + + F ++D+AG+ Sbjct: 1 MTFTLAIVGRPNVGKSTLFNRLVGKKLALVDDQPGVTRDLREGEGRLADLRFTVIDSAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + + S+ +M TE A+ A + LF+ID++AG+ P D LRKKN +I+ +NK Sbjct: 61 EEATDDSLQGRMRRLTERAVEMADVCLFMIDARAGVLPADQVFADILRKKNANVILAANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKI---FKQKYP-NHPLEMIE 176 + R A E Y+L E + ISAEH G EL V+ I F+++ + P ++ Sbjct: 121 GEGRAADNTILEAYALGLGEPIRISAEHGEGMGELMDVLRPISDAFEERAALDAPETDVD 180 Query: 177 NNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSG 236 + +E++P+ V I+KPL+IAVVGRPN GKSTLIN+++G RLLTG ++G Sbjct: 181 VGEDDEDAPR----------VPTIAKPLQIAVVGRPNAGKSTLINKIIGEERLLTGPEAG 230 Query: 237 ITRDSVSISWNWKNH-----PIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIV 291 ITRD++S+ W P+ IFDTAGMR+ ++I E LE+ +V +++V+ E +V Sbjct: 231 ITRDAISVKQVWAGPDGIGVPMRIFDTAGMRRKAKIHEKLEKLSVSDGLRAVKFAEVVVV 290 Query: 292 LLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDI 351 LLD IPFE+QDLRI D G AVV+A+NKWD DK + L++LR + LPQ+ Sbjct: 291 LLDVEIPFEQQDLRIADLAEREGRAVVIAVNKWDTEDDKQDKLRELRESFERLLPQLRGA 350 Query: 352 YINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLK 411 + T+S +TG+GLD L +++ + +W R+TT+ LN WL Q+PPP + +++ Sbjct: 351 PLVTVSAKTGKGLDKLQQAIMRAHDVWNRRVTTAQLNRWLIGMLEQHPPPAPGGKRIKMR 410 Query: 412 YITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCF--QSSKNPYIK 469 Y TQ+++ PP+F++ + P+ +PESYKRYL+N LR +F + G PIR+ Q KNPY Sbjct: 411 YATQVKTRPPAFVVMTSHPDLMPESYKRYLVNGLRADFDMPGTPIRLYLRDQGDKNPYKD 470 Query: 470 K 470 K Sbjct: 471 K 471 >gi|126736006|ref|ZP_01751750.1| GTP-binding protein EngA [Roseobacter sp. CCS2] gi|126714563|gb|EBA11430.1| GTP-binding protein EngA [Roseobacter sp. CCS2] Length = 485 Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust. Identities = 197/476 (41%), Positives = 301/476 (63%), Gaps = 16/476 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +T+AIVG PNVGKSTLFNRLV KK+A+V + PG+TRD G+ I + F ++D+AG+ Sbjct: 1 MSFTLAIVGRPNVGKSTLFNRLVGKKLALVDDQPGVTRDLREGEGRIADLRFTVIDSAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + + S+ +M TE A+ A + LF+ID++AG+ P D LRKKN +I+ +NK Sbjct: 61 EEATDDSLQGRMRRLTERAVEMADVCLFMIDARAGVLPADEVFADILRKKNANVILAANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + + A + E Y+L E + +SAEH G EL V+ P+ + Sbjct: 121 GEGKAADASILEAYALGLGEPIRMSAEHGEGMGELMDVL----------RPIADAHAEQA 170 Query: 181 NEESPKENITSEG----KSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSG 236 ++P+ ++ + V +KPL+IAVVGRPN GKSTLIN+++G RLLTG ++G Sbjct: 171 AADAPEVDVDVGEDDEDAARVPTRAKPLQIAVVGRPNAGKSTLINKIIGEERLLTGPEAG 230 Query: 237 ITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDAT 296 ITRD++S+ +W P+ IFDTAGMRK +++ E LE+ +V +++V+ E +VLLD Sbjct: 231 ITRDAISVQQDWGGVPMRIFDTAGMRKKAKVQEKLEKLSVSDGLRAVKFAEVVVVLLDVE 290 Query: 297 IPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTI 356 IPFE+QDLRI D G AVV+A+NKWD+ +K + L++LR + LPQ+ + T+ Sbjct: 291 IPFEQQDLRIADLAEREGRAVVVAVNKWDVEVEKQSKLKELRQDFERLLPQLRGAPLVTV 350 Query: 357 SGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQI 416 S +TG+GLD L +++ + +W R++T+ LN WL Q+PPP + +++Y+TQ+ Sbjct: 351 SAKTGKGLDRLQQAIMRAHDVWNRRVSTANLNRWLTGMLEQHPPPAPGGKRIKMRYMTQV 410 Query: 417 QSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCF--QSSKNPYIKK 470 ++ PP+F++ + P+ +PESYKRYL+N LR++F + G PIR+ Q KNPY K Sbjct: 411 KTRPPAFVVMTSHPDMMPESYKRYLVNGLRVDFDMPGTPIRLFLRDQGDKNPYKDK 466 >gi|144898965|emb|CAM75829.1| Small GTP-binding protein domain:GTP-binding [Magnetospirillum gryphiswaldense MSR-1] Length = 470 Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust. Identities = 187/471 (39%), Positives = 293/471 (62%), Gaps = 5/471 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +T+AIVG PNVGKSTLFNRL +++A+V + PG+TRDR A + G+ F ++DTAG Sbjct: 1 MTFTVAIVGRPNVGKSTLFNRLAGRRLAIVHDMPGVTRDRREAAASLLGMEFRVIDTAGF 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 D + SI +M QT+ A+ EA ++L LID++AG+TP D +LRK+ P+I+V+NK Sbjct: 61 EDAHDESIEARMRYQTDTAVAEADVVLMLIDARAGVTPLDAHFADYLRKQKTPVILVANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + + YE Y L E V SAEH G +EL F + ++++ Sbjct: 121 CEGKAGAPGMYESYGLGLGEPVPFSAEHGEGLAEL----FDALRPHAEAAGALDFDDDEE 176 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 ++ + + E + +PL++ +VGRPNVGKSTL+NRLLG +R+LTG ++G+TRD Sbjct: 177 DDFFAADPVDDEEIETEDRPERPLQLVIVGRPNVGKSTLVNRLLGQDRMLTGPEAGLTRD 236 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 ++S+ W ++ I + DTAG+RK + I + +E+ + +++++R E ++++D+ + Sbjct: 237 AISVDWQHRDRGIRLVDTAGLRKRANIEDPVEKLSASNTLEAIRMAEVVVLVMDSAAILD 296 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 KQDL I V G ++V+A+NKWD V LQ L + +LP + + TIS T Sbjct: 297 KQDLTIARMVVEEGRSLVIAINKWDAVEKPQEALQRLADRLETSLPMVRGLPTVTISALT 356 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTI-FNRYNRLKYITQIQSS 419 G G+D +M +VL ++K W RI TS LN WL+ +PPP + R +++Y+TQI++ Sbjct: 357 GRGVDKMMDAVLAVHKTWNRRIPTSQLNRWLEDVLSHHPPPAMPGGRRLKIRYMTQIKAR 416 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 PP+F+IF + P ++PESY RYLIN LR NF ++G+P+R+ + +NPY K Sbjct: 417 PPTFVIFASKPEQLPESYSRYLINGLRENFKMAGVPMRLYVRGGRNPYADK 467 >gi|296282892|ref|ZP_06860890.1| GTP-binding protein EngA [Citromicrobium bathyomarinum JL354] Length = 464 Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust. Identities = 184/474 (38%), Positives = 288/474 (60%), Gaps = 21/474 (4%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ + I+G PNVGKSTLFNRL KK+A+V + PG+TRDR +G + G+ F IVDTAG Sbjct: 1 MLPRVIIIGRPNVGKSTLFNRLAGKKLALVDDQPGVTRDRRFGDVTLAGMRFTIVDTAGW 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 D ++ +M QTE++I +A +LF++D++AG+TP D+ I ++LR ++P+I+V+NK Sbjct: 61 EDEDPSTLPGRMRMQTEVSIADADAVLFVVDARAGLTPLDNEIGNWLRTADVPVIVVANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKY-PNHPLEMIENNK 179 + R +E YSL E + ISAEH GT++L ++ I +K LE ++ + Sbjct: 121 AEGRSGDAGIFEAYSLGLGEPIGISAEHGEGTADLFEALWPIIGEKSEAGDALEAMDEGE 180 Query: 180 RNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITR 239 +E+ + PL++A+VGRPN GKSTLINR+LG +RLLTG ++GITR Sbjct: 181 EDEDGVP--------------TGPLKLAIVGRPNAGKSTLINRMLGEDRLLTGPEAGITR 226 Query: 240 DSVSISWNWKN------HPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLL 293 DS++I W W + + + DTAGMRK + E LE+ +V + ++V E +++L Sbjct: 227 DSIAIDWEWTDPDSGDTREVRLIDTAGMRKKRNVVEKLEKLSVADARRAVDFAEVVVLML 286 Query: 294 DATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYI 353 DAT E QDL+I G A+++A+NKWD+ ++ L +R + L Q+ + + Sbjct: 287 DATKGLEHQDLKIASLAIEEGRALMIAINKWDVAAEPSKLFNGIRFALDEGLAQVRGLPL 346 Query: 354 NTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYI 413 +S +TG+GLD L+ + ++ + W R++TS LN W NPPP + +L+YI Sbjct: 347 IAVSAKTGKGLDQLIAAAFQLRETWSKRVSTSALNRWFDDALEANPPPAPGGKRIKLRYI 406 Query: 414 TQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 TQ + PP F++F T + +P SY+RYL+N +R +P+R+ ++SKNPY Sbjct: 407 TQAGTRPPRFVVFGTRLDMLPTSYERYLVNGIRRELGFDAVPVRVVLKTSKNPY 460 >gi|110679080|ref|YP_682087.1| GTP-binding protein EngA [Roseobacter denitrificans OCh 114] gi|123065686|sp|Q169E2|DER_ROSDO RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|109455196|gb|ABG31401.1| GTP-binding protein [Roseobacter denitrificans OCh 114] Length = 492 Score = 389 bits (999), Expect = e-106, Method: Compositional matrix adjust. Identities = 198/481 (41%), Positives = 299/481 (62%), Gaps = 24/481 (4%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +T+AIVG PNVGKSTLFNRLV K++A+V + PG+TRD G A + + F ++DTAG+ Sbjct: 1 MSFTLAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDLREGAARLADLRFTVIDTAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 D + S+ +M TE A++ A + LF++D++ GITP D LRK+ +++ +NK Sbjct: 61 EDVTDDSLQGRMRRLTERAVDMADICLFMVDARVGITPTDLVFADILRKRAGHVVLAANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + A E YSL E + +SAEH G ++L++ + PL + Sbjct: 121 AEGAAADAGVIEAYSLGLGEPIRLSAEHGEGLNDLYTHLM----------PLADAYAERA 170 Query: 181 NEESPKENITSEGKSS-------VKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGS 233 E++P+ ++ + S + +KPL++AVVGRPN GKSTL+N++LG +RLLTG Sbjct: 171 AEDAPETDVALDEDSGDMEAALRMPTANKPLQVAVVGRPNAGKSTLVNQILGEDRLLTGP 230 Query: 234 QSGITRDSVSISWNWKNH-----PIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCET 288 ++GITRD++S+ +W P+ IFDTAGMRK +++ E LE+ +V +++V+ E Sbjct: 231 EAGITRDAISLRTDWVGPEGDVIPMRIFDTAGMRKKAKVQEKLEKLSVGDGLRAVKFAEV 290 Query: 289 TIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQI 348 +VLLDA IPFE+QDLRI D G AVV+A+NKWD+ +K L +LR + LPQ+ Sbjct: 291 VVVLLDAAIPFEQQDLRIADLAEREGRAVVVAVNKWDIEENKQAKLNELRESFERLLPQL 350 Query: 349 GDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYN 408 + T+S RTG GLD L +VL ++W R+TT+ LN WL +PPP + Sbjct: 351 RGAPLVTVSARTGRGLDRLHKAVLRAYEVWNRRVTTAQLNRWLAGMLEAHPPPAPQGKRI 410 Query: 409 RLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCF--QSSKNP 466 +L+Y+TQ ++ PP F++ C+ P+K+P+SY RYL+N LR++F + G PIR+ Q+ NP Sbjct: 411 KLRYMTQAKTRPPGFVVMCSHPDKVPDSYNRYLVNGLRLDFDMPGTPIRLWMRGQNDANP 470 Query: 467 Y 467 Y Sbjct: 471 Y 471 >gi|56551349|ref|YP_162188.1| GTP-binding protein EngA [Zymomonas mobilis subsp. mobilis ZM4] gi|56542923|gb|AAV89077.1| small GTP-binding protein [Zymomonas mobilis subsp. mobilis ZM4] Length = 454 Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust. Identities = 188/464 (40%), Positives = 289/464 (62%), Gaps = 13/464 (2%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 ++AI+G PNVGKSTLFNRLV K++A+V + PG+TRDR G A + G+ F ++DTAG D Sbjct: 3 SVAIIGRPNVGKSTLFNRLVGKRLALVDDRPGVTRDRREGDAELIGMPFRVIDTAGFEDE 62 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 S+ +M QTE A+ E + LF+ID++ GITP D I +LR PII+++NK + Sbjct: 63 DPASLPGRMRVQTEAAVKECDVALFVIDARQGITPLDEEIARWLRALGKPIIVLANKCEG 122 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + E YSL F E + SAEH G + +F+ P +E + E+ Sbjct: 123 KGGESGLLEAYSLGFGEPLPFSAEHGEG-------LVGLFQALRP-----FVEGDALEED 170 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 + E+ E ++S PL++A+VGRPN GKSTLINRL+G +R++TG ++GITRDS++ Sbjct: 171 TSSEDEDEEKSEEEIDLS-PLQLAIVGRPNAGKSTLINRLIGVDRMITGPEAGITRDSIA 229 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 I W+W+ P+ + DTAG+RK +R+ + +E+ +V + +++ E ++LLD T E QD Sbjct: 230 IDWSWQGRPVRLIDTAGLRKKARVVDKMERLSVMDTFRTIDYAEVVVLLLDGTQGLEGQD 289 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 LRI D V G ++++A+NKWDMV + LQ +R L Q+ + + TIS TG G Sbjct: 290 LRIADRVLEEGRSLIIAINKWDMVENPSAFLQAIREGLNDGLAQVKGVPLITISALTGRG 349 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 +D L+ + E K W R++T LN WL + + PP + +L+Y+TQI++ PP+F Sbjct: 350 VDPLLKAAFETRKAWSRRVSTGQLNRWLTRAIAHHAPPAPGGKRIKLRYLTQIKTRPPTF 409 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 ++F T +++P SY+RYLIN LR + +PIR+ F+S +NP+ Sbjct: 410 VLFGTRVDQLPTSYERYLINSLRSDLDFGSVPIRLHFRSPENPF 453 >gi|332185040|ref|ZP_08386789.1| ribosome-associated GTPase EngA [Sphingomonas sp. S17] gi|332014764|gb|EGI56820.1| ribosome-associated GTPase EngA [Sphingomonas sp. S17] Length = 456 Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust. Identities = 185/471 (39%), Positives = 281/471 (59%), Gaps = 27/471 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNRLV KK+A+V + PG+TRDR G A + G+ F ++DTAG D Sbjct: 7 VAIVGRPNVGKSTLFNRLVGKKLALVDDRPGVTRDRREGDAHLLGLDFRVIDTAGYEDED 66 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 ++ +M QTE A+ EA + LFL+D++AGI P D I +LR + PI++ +NK + R Sbjct: 67 PDTLPGRMRRQTEAAVGEADVALFLVDARAGIMPLDEEIARWLRSSDTPIVLAANKAEGR 126 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 A++ E +L F + V++SAEH G +L + ++ +EN Sbjct: 127 AAEQGILEALALGFGDPVQLSAEHGEGVGDLFEALLPFIDREVEEEEEVDLENP------ 180 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 PL++A+VGRPN GKSTLINR LG +RL+TG ++GITRDS++I Sbjct: 181 ----------------FAPLKLAIVGRPNAGKSTLINRFLGQDRLITGPEAGITRDSIAI 224 Query: 245 SWNWKNHPIEI-----FDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPF 299 W W++ E+ DTAGMRK +++ + LE+ +V ++++V E ++LLDAT+ Sbjct: 225 DWEWRDRDGEVRQVRLIDTAGMRKKAKVQDKLEKLSVADALRAVDFAEVVVLLLDATLGL 284 Query: 300 EKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGR 359 E QDLRI D V G A+++ALNKWD+ + +L ++ L Q+ + + +S Sbjct: 285 ESQDLRIADRVLEEGRALLIALNKWDVAENPSSLFNGVKKALEDGLSQVKGVPLLAVSAA 344 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 TG+GLD L+ + E W R+ T LN W ++ NPPP + +L+Y+TQ++S Sbjct: 345 TGKGLDTLIEAAFETRAAWSKRVPTGELNRWFERAVDANPPPAPGGKRIKLRYVTQVKSR 404 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 PPSF+IF T +++P SY+RYL+N +R +P+R+ ++ KNP+ K Sbjct: 405 PPSFVIFGTRVDQLPASYERYLVNSMRRELGFGAVPVRLTLRAPKNPFGNK 455 >gi|255262204|ref|ZP_05341546.1| ribosome-associated GTPase EngA [Thalassiobium sp. R2A62] gi|255104539|gb|EET47213.1| ribosome-associated GTPase EngA [Thalassiobium sp. R2A62] Length = 495 Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust. Identities = 203/481 (42%), Positives = 299/481 (62%), Gaps = 24/481 (4%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +T+AIVG PNVGKSTLFNRLV K++A+V + PG+TRD G+A + + F ++DTAG+ Sbjct: 1 MSFTLAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDLREGEARLADLRFTVIDTAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + + S+ +M TE A++ A + LF+ID++AG+ P D LR++ +I+ +NK Sbjct: 61 EEATDESLQGRMRKLTERAVDMADVCLFMIDARAGVLPADEVFADILRRRASKVILAANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKI---FKQKYPNHPLEMIEN 177 + + A E YSL E + +SAEH G +EL S + I F + E Sbjct: 121 GEGKAADAGVIEAYSLGLGEPLRLSAEHGEGMAELLSELMPISDAFAE----------EA 170 Query: 178 NKRNEESPKE-NITSEGKSSVKNI--------SKPLRIAVVGRPNVGKSTLINRLLGYNR 228 +++EE+ E ++ +NI SKPL+IAVVGRPN GKSTLIN++LG +R Sbjct: 171 ARQDEEASIEIDVDVFDDEDEENIPEVRPITASKPLQIAVVGRPNAGKSTLINQILGEDR 230 Query: 229 LLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCET 288 LLTG ++GITRD++S+ W + IFDTAGMRK +++ + LE+ +V +++V+ E Sbjct: 231 LLTGPEAGITRDAISLRTEWDGTHVRIFDTAGMRKRAKVQDKLEKLSVSDGLRAVKFAEV 290 Query: 289 TIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQI 348 +VLLD IPFE+QDLRI D G AVV+A+NKWD+ +K L+DLR + LPQ+ Sbjct: 291 VVVLLDVEIPFEQQDLRIADLAEREGRAVVVAVNKWDIEGEKQAKLKDLRESFERLLPQL 350 Query: 349 GDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYN 408 + T+S +TG GLD L ++L + W R+ TS LN WL +PPP R Sbjct: 351 RGAPLVTVSAKTGRGLDRLHDAILRAHDTWNRRVPTSALNRWLAGMTEAHPPPAPGGRRI 410 Query: 409 RLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIR--MCFQSSKNP 466 +++Y TQ+++ PP F++ C+FP+K+P SY RYL+N LR +F + G PIR M Q+ +NP Sbjct: 411 KMRYATQVKTRPPGFVVMCSFPDKLPASYTRYLVNGLREDFDMPGTPIRLHMRSQADQNP 470 Query: 467 Y 467 Y Sbjct: 471 Y 471 >gi|260753034|ref|YP_003225927.1| GTP-binding protein EngA [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552397|gb|ACV75343.1| small GTP-binding protein [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 454 Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust. Identities = 188/464 (40%), Positives = 288/464 (62%), Gaps = 13/464 (2%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 ++AI+G PNVGKSTLFNRLV K++A+V + PG+TRDR G A + G+ F ++DTAG D Sbjct: 3 SVAIIGRPNVGKSTLFNRLVGKRLALVDDRPGVTRDRREGDAELIGMPFRVIDTAGFEDE 62 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 S+ +M QTE A+ E + LF+ID++ GITP D I +LR PII+++NK + Sbjct: 63 DPASLPGRMRVQTEAAVKECDVALFVIDARQGITPLDEEIARWLRALGKPIIVLANKCEG 122 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + E YSL F E + SAEH G + +F+ P +E + E Sbjct: 123 KGGESGLLEAYSLGFGEPLPFSAEHGEG-------LVGLFQALRP-----FVEGDSLEEN 170 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 + E+ E ++S PL++A+VGRPN GKSTLINRL+G +R++TG ++GITRDS++ Sbjct: 171 TSSEDEDEEKSEEEIDLS-PLQLAIVGRPNAGKSTLINRLIGVDRMITGPEAGITRDSIA 229 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 I W+W+ P+ + DTAG+RK +R+ + +E+ +V + +++ E ++LLD T E QD Sbjct: 230 IDWSWQGRPVRLIDTAGLRKKARVVDKMERLSVMDTFRTIDYAEVVVLLLDGTQGLEGQD 289 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 LRI D V G ++++A+NKWDMV + LQ +R L Q+ + + TIS TG G Sbjct: 290 LRIADRVLEEGRSLIIAINKWDMVENPSAFLQAIREGLNDGLAQVKGVPLITISALTGRG 349 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 +D L+ + E K W R++T LN WL + + PP + +L+Y+TQI++ PP+F Sbjct: 350 VDPLLKAAFETRKAWSRRVSTGQLNRWLTRAIAHHAPPAPGGKRIKLRYLTQIKTRPPTF 409 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 ++F T +++P SY+RYLIN LR + +PIR+ F+S +NP+ Sbjct: 410 VLFGTRVDQLPTSYERYLINSLRSDLDFGSVPIRLHFRSPENPF 453 >gi|260575150|ref|ZP_05843151.1| small GTP-binding protein [Rhodobacter sp. SW2] gi|259022772|gb|EEW26067.1| small GTP-binding protein [Rhodobacter sp. SW2] Length = 492 Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust. Identities = 199/476 (41%), Positives = 295/476 (61%), Gaps = 17/476 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +T+AIVG PNVGKSTLFNRLV +K+A+V + PG+TRD G A + + F ++DTAG+ Sbjct: 1 MTFTLAIVGRPNVGKSTLFNRLVGRKLALVDDQPGVTRDLREGDAKLFDLRFTVIDTAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + + S+ +M TE A+ A + LFLID + G+TP D LR+KN +I+ NK Sbjct: 61 EEVTDDSLQGRMRRLTERAVEMADVCLFLIDGRVGVTPTDEVFADILRRKNAHVIVGVNK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKI---FKQKY----PNHPLE 173 + + E +SL + + +SAEH G +L+ ++ I F ++ P L+ Sbjct: 121 SEGKAGDAGAIEAWSLGLGDPIRLSAEHGEGMDDLYDILRPIGDSFAERAEADAPLVDLD 180 Query: 174 MIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGS 233 + E E P+ + KPL+IAV+GRPN GKSTLIN+++G++R+LTG Sbjct: 181 ISEAEAEQEPDPQ--------AFRPTYEKPLQIAVIGRPNAGKSTLINKIVGFDRMLTGP 232 Query: 234 QSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLL 293 ++GITRD++S+ +W + PI IFDTAGMRK +RI++ LE+ +V +++VR E +VLL Sbjct: 233 EAGITRDAISVKADWFDTPIRIFDTAGMRKKARISDKLEKMSVSDGLRAVRFAEVVVVLL 292 Query: 294 DATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYI 353 D PFE QDLRI D G AVV+A+NKWD+ +K L +LR + LPQ+ + Sbjct: 293 DVETPFETQDLRIADYAETEGRAVVVAVNKWDLEGEKQEKLAELREMFERLLPQLRGAPL 352 Query: 354 NTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYI 413 T+S +TG GLD L ++L+ + +W R+ T+ LN+WL +PPP R +L+Y+ Sbjct: 353 VTVSAKTGRGLDRLHAAILKAHDVWNRRVPTARLNTWLGAMTEAHPPPAPGGRRIKLRYM 412 Query: 414 TQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCF--QSSKNPY 467 TQ+++ PP F+ C+ P+ +PESYKRYLIN LR +F + G PIR+ Q KNP+ Sbjct: 413 TQVKTRPPGFVAMCSHPDLMPESYKRYLINGLRDHFDMPGTPIRIILRGQGEKNPF 468 >gi|218673078|ref|ZP_03522747.1| GTP-binding protein EngA [Rhizobium etli GR56] Length = 393 Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust. Identities = 187/395 (47%), Positives = 266/395 (67%), Gaps = 7/395 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +T+AIVG PNVGKSTLFNRLV KK+A+V + PG+TRDR G A + G+ F I+DTAG+ Sbjct: 1 MSFTVAIVGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRRPGDARLMGLTFTIIDTAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + S+ +M QTE AI+EA L LF++D+K G+TP D A+ LR++ P+++V+NK Sbjct: 61 EEADEESLQGRMRAQTEAAIDEADLSLFVVDAKNGLTPVDTALAEMLRRRGKPVVLVANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF--KQKYPNHPLEMIENN 178 + R + FY+ Y+L E ISAEH G +L I + + Y + + + + Sbjct: 121 SEARGSDSGFYDAYTLGLGEPTPISAEHGQGMLDLRDAIVEAIGKDRAYAKDDVAVTDVD 180 Query: 179 KRNEESPKEN-ITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGI 237 P EN E + + + +KPLR+A+VGRPN GKSTLINR LG +RLLTG ++GI Sbjct: 181 I----PPDENEADGEDEEPIYDDTKPLRVAIVGRPNAGKSTLINRFLGEDRLLTGPEAGI 236 Query: 238 TRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATI 297 TRDS+S+ W+W+ I++FDTAGMR+ +R+TE LE+ +V +++++R ET +++ DATI Sbjct: 237 TRDSISVEWDWRGRTIKMFDTAGMRRKARVTEKLEKLSVADALRAIRFAETVVIVFDATI 296 Query: 298 PFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTIS 357 PFEKQDL+IVD V G A VLA NKWDM+ D+ +L DLR K + LPQ I IS Sbjct: 297 PFEKQDLQIVDLVLREGRAAVLAFNKWDMIEDRQAVLADLREKTDRLLPQARGIRAVPIS 356 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQ 392 G+TG GLD LM S+++ +++W RI+T+ LN WL+ Sbjct: 357 GQTGWGLDKLMQSIIDTDRVWNKRISTARLNRWLE 391 >gi|197104999|ref|YP_002130376.1| GTP-binding protein [Phenylobacterium zucineum HLK1] gi|196478419|gb|ACG77947.1| GTP-binding protein [Phenylobacterium zucineum HLK1] Length = 509 Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust. Identities = 177/469 (37%), Positives = 289/469 (61%), Gaps = 24/469 (5%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +AIVG PNVGKSTLFNRL +K+A+V + PG+TRDR +G + + ++DTAG Sbjct: 1 MPLKLAIVGRPNVGKSTLFNRLAGRKLAIVDDRPGVTRDRRFGTGRLGDLDLELIDTAGF 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 D + S+ +M QTE A++E + LF+IDS+ G+TP D LRK++ P+I+ +NK Sbjct: 61 EDVTDESLEARMRAQTERAVDECDVALFVIDSREGVTPADRIFAEILRKRDKPVILAANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + R + + + L E V ISAEH G ++L++ + ++ + Sbjct: 121 AEGRQGEAGILDAWGLGLGEPVPISAEHGEGMADLYAALAAVWAE--------------- 165 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 + + + KP+RIA+VGRPN GKSTL+NRL+G +RLLTG ++GITRD Sbjct: 166 ---------DEDEEEAEDESDKPVRIAIVGRPNAGKSTLVNRLIGEDRLLTGPEAGITRD 216 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 ++ + W W+ PI + DTAG+R+ +++ E LE+ + + +++++ E ++++DAT PFE Sbjct: 217 AIPVDWEWEGRPIRLVDTAGLRRKAKVQEKLEKLSTQDTIRAITFAEVVLLVMDATHPFE 276 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 QDL+I D G +V L KWD+V + +L ++ +A + LPQ+ I +S T Sbjct: 277 IQDLQIADLCEREGRGLVFVLTKWDLVEEPQAVLAEITEEAYRLLPQVKGSPIVALSAET 336 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G G+D LM +VL+++ W T++ T LN WL+ ++PPP + R + KY+ Q ++ P Sbjct: 337 GRGMDRLMPAVLKVHGDWSTKVKTRDLNDWLRMAVERHPPPAVNGRRVKPKYMAQTKARP 396 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIK 469 P+F++F + +++P+ Y+RYL+N LR +F L G+PIR+ +S+KNP+ + Sbjct: 397 PTFVMFASRADQLPDHYRRYLVNSLRESFDLPGVPIRLSVRSNKNPFAE 445 >gi|83310443|ref|YP_420707.1| GTP-binding protein EngA [Magnetospirillum magneticum AMB-1] gi|123542640|sp|Q2W7M7|DER_MAGSA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|82945284|dbj|BAE50148.1| GTP-binding protein engA [Magnetospirillum magneticum AMB-1] Length = 464 Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust. Identities = 192/482 (39%), Positives = 292/482 (60%), Gaps = 32/482 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +T+AI+G PNVGKSTLFNRLV K++A+V + PG+TRDR G+A + G+ F +VDTAG Sbjct: 1 MPFTVAIIGRPNVGKSTLFNRLVGKRLAIVHDLPGVTRDRREGRASLLGMEFQVVDTAGF 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 D SI +M QT++A+ EA + L LIDS+AG+TP D LR+ P+I+V+NK Sbjct: 61 EDDGGDSIEARMRHQTDMAVAEADVALLLIDSRAGVTPLDRHFADHLRRLPTPVILVANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + + YE Y L E V +SAEH G EL + R Sbjct: 121 CEGKAGAPGLYESYGLGMGEPVAVSAEHGEGMYELFEAL--------------------R 160 Query: 181 NEESPKENITSEGKSSVK-----------NISKPLRIAVVGRPNVGKSTLINRLLGYNRL 229 + +T EG + ++PL +A+VGRPNVGKSTL N+LLG +RL Sbjct: 161 DHAIKAGALTPEGDDPEPEEPAEGEDGEPDPTRPLTMAIVGRPNVGKSTLGNQLLGQDRL 220 Query: 230 LTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETT 289 LTG ++G+TRD++++ W + +++ DTAG+RK ++I +++E+ +V +++++R E Sbjct: 221 LTGPEAGLTRDAIAVEWEHRGRRMKLVDTAGLRKKAQIYDAIEKLSVGNTIETIRMSEVV 280 Query: 290 IVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIG 349 ++++DA +KQDL I V G A+VLA+NKWD+V D L+ L+ + +LPQ Sbjct: 281 VLVMDAAAILDKQDLTIARLVVEEGRALVLAINKWDVVDDPQTALKRLKDRLETSLPQAR 340 Query: 350 DIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTI-FNRYN 408 + T+S TG G++ LM +VL+ W RI T+ LN WL+ ++PPP + R Sbjct: 341 GVATVTLSALTGRGIEKLMDAVLDTWTKWNRRIPTAQLNRWLEDMIERHPPPALPGGRRY 400 Query: 409 RLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYI 468 +++Y+TQ ++ PP+F++F T P ++PESY RYL+N LR F L G+P+R+ + KNPY Sbjct: 401 KIRYMTQAKARPPTFVLFATRPEQLPESYSRYLVNGLREAFDLPGVPVRLYVRGGKNPYA 460 Query: 469 KK 470 +K Sbjct: 461 EK 462 >gi|241761000|ref|ZP_04759089.1| small GTP-binding protein [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241374619|gb|EER64080.1| small GTP-binding protein [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 454 Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust. Identities = 188/464 (40%), Positives = 288/464 (62%), Gaps = 13/464 (2%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 ++AI+G PNVGKSTLFNRLV K++A+V + PG+TRDR G A + G+ F ++DTAG D Sbjct: 3 SVAIIGRPNVGKSTLFNRLVGKRLALVDDRPGVTRDRREGDAELIGMPFRVIDTAGFEDE 62 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 S+ +M QTE A+ E + LF+ID++ GITP D I +LR PII+++NK + Sbjct: 63 DPASLPGRMRVQTEAAVKECDVALFVIDARQGITPLDEEIARWLRALGKPIIVLANKCEG 122 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + E YSL F E + SAEH G + +F+ P +E E+ Sbjct: 123 KGGESGLLEAYSLGFGEPLPFSAEHGEG-------LVGLFQALRP-----FVEGYSLEED 170 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 + E+ E ++S PL++A+VGRPN GKSTLINRL+G +R++TG ++GITRDS++ Sbjct: 171 TSSEDEDEEKSEEEIDLS-PLQLAIVGRPNAGKSTLINRLIGVDRMITGPEAGITRDSIA 229 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 I W+W+ P+ + DTAG+RK +R+ + +E+ +V + +++ E ++LLD T E QD Sbjct: 230 IDWSWQGRPVRLIDTAGLRKKARVVDKMERLSVMDTFRTIDYAEVVVLLLDGTQGLEGQD 289 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 LRI D V G ++++A+NKWDMV + LQ +R L Q+ + + TIS TG G Sbjct: 290 LRIADRVLEEGRSLIIAINKWDMVENPSAFLQAIREGLNDGLAQVKGVPLITISALTGRG 349 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 +D L+ + E K W R++T LN WL + + PP + +L+Y+TQI++ PP+F Sbjct: 350 VDPLLKAAFETRKAWSHRVSTGQLNRWLTRAIAHHAPPAPGGKRIKLRYLTQIKTRPPTF 409 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 ++F T +++P SY+RYLIN LR + +PIR+ F+S +NP+ Sbjct: 410 VLFGTRVDQLPTSYERYLINSLRSDLDFGSVPIRLHFRSPENPF 453 >gi|126725455|ref|ZP_01741297.1| GTP-binding protein EngA [Rhodobacterales bacterium HTCC2150] gi|126704659|gb|EBA03750.1| GTP-binding protein EngA [Rhodobacterales bacterium HTCC2150] Length = 469 Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust. Identities = 192/460 (41%), Positives = 297/460 (64%), Gaps = 18/460 (3%) Query: 13 VGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNCSIAKQM 72 +GKSTLFNRLV K++A+V + PG+TRD G A + + F +VDTAG+ + + S+ +M Sbjct: 1 MGKSTLFNRLVGKRLALVDDQPGVTRDLREGAARLGDIKFTVVDTAGLEEATDESLQGRM 60 Query: 73 NDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQRNFYE 132 TE A+ A + LF+ID++AG+ P D LRKK+ +I+ +NK + + A E Sbjct: 61 RALTERAVGMADVCLFMIDARAGVLPADEVFADILRKKSAHVILAANKGEGKAADGGVLE 120 Query: 133 IYSLDFKEIVEISAEHDLGTSELHSVIFKI---FKQKYPNHPLEMIENNKRNEESPKENI 189 YSL E + +SAEH G S+L S++ I F ++ +H E+ + Sbjct: 121 AYSLGLGEPIRLSAEHGEGMSDLLSILTPIADDFAKRDQDHEAEV-------------DA 167 Query: 190 TSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWK 249 E V + +PL+IAVVGRPN GKSTLIN++LG RLLTG ++GITRD++S++++W+ Sbjct: 168 DVEDGERVISRERPLQIAVVGRPNAGKSTLINQILGEERLLTGPEAGITRDAISLAFDWE 227 Query: 250 NHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDS 309 + P+ +FDTAGMRK +++ + +E+ +V +++V+ E +VLLD IPFE+QDLRI D Sbjct: 228 DTPVRMFDTAGMRKKAKVQDKIEKLSVSDGLRAVKFAEVVVVLLDVEIPFEQQDLRIADL 287 Query: 310 VFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMV 369 G +VV+A+NKWD+ +K + L++L+ + + LPQ+ + T+S +TG G+D L Sbjct: 288 AEREGRSVVIAVNKWDIEDEKQDKLKELKEEFARLLPQLRGAPLITVSAKTGRGMDRLRE 347 Query: 370 SVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFLIFCTF 429 ++L +K+W TRI T+ LN WL+ +PPP R +LK+ITQ ++ PP F++ C++ Sbjct: 348 AILWAHKVWNTRIPTAPLNEWLKDMISSHPPPAPGGRRIKLKFITQAKTRPPGFVVKCSY 407 Query: 430 PNKIPESYKRYLINRLRINFSLSGIPIRMCF--QSSKNPY 467 P+K+P+SYKRYL+N LR +F + G PIR+ F Q +NPY Sbjct: 408 PDKLPDSYKRYLVNGLREDFDMPGTPIRLYFRGQGDENPY 447 Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 32/56 (57%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 IA+VG PN GKSTL N+++ ++ + G GITRD + + DTAG+ Sbjct: 184 IAVVGRPNAGKSTLINQILGEERLLTGPEAGITRDAISLAFDWEDTPVRMFDTAGM 239 >gi|85373044|ref|YP_457106.1| GTP-binding protein EngA [Erythrobacter litoralis HTCC2594] gi|84786127|gb|ABC62309.1| predicted GTPase [Erythrobacter litoralis HTCC2594] Length = 485 Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust. Identities = 187/470 (39%), Positives = 279/470 (59%), Gaps = 15/470 (3%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+ I+G PNVGKSTLFNRLV KK+A+V + PG+TRDR G A + G+ F +VDTAG D Sbjct: 8 TVIIIGRPNVGKSTLFNRLVGKKLALVDDQPGVTRDRRMGDAELAGMEFTVVDTAGWEDD 67 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 S+ +M QTE+++ A LF+ID++AGITP D I +LR +P+++V+NK + Sbjct: 68 DKDSLPGRMRAQTEVSLEGADAALFVIDARAGITPLDEEIARWLRTVEVPVVLVANKAEG 127 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + E Y+L + +SAEH G ++L F+ +P+ + E + Sbjct: 128 KAGDAGLLESYALGLGDPAPVSAEHGEGIADL-------FEGLWPH--IGHFEKDAERAA 178 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 + + + PL++A+VGRPN GKSTLINRLLG +RLLTG ++GITRDS+S Sbjct: 179 AEAAEVGEGDEDDEDAPLGPLKLAIVGRPNAGKSTLINRLLGEDRLLTGPEAGITRDSIS 238 Query: 244 ISWNWKN------HPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATI 297 + W W + I + DTAGMRK +R+TE LE+ +V + ++V E ++LLDAT Sbjct: 239 VDWQWTDPKSGEPRDIRLIDTAGMRKRARVTEKLEKLSVADAFRAVDFAEVVVLLLDATQ 298 Query: 298 PFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTIS 357 E QDL+I V G A+++A+NKWD+ D L +R + L Q+ + + +S Sbjct: 299 GLEHQDLKIASKVLEEGRALMIAINKWDIAEDASYLFNGIRAALDEGLSQVRGLPLFAVS 358 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 +TG+GLD+++ + EI + W R+ T+ LN W NPPP R +L+YITQ Sbjct: 359 AKTGKGLDEMLRAAFEIRESWSKRVPTAALNRWFDDALDANPPPAPGGRRIKLRYITQAG 418 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 + PP F++F T +P+SY+RYL+N +R +P+R+ +S KNPY Sbjct: 419 TRPPRFVVFGTRLEALPKSYERYLVNGIRAKLGFEAVPVRVVLKSPKNPY 468 >gi|83952357|ref|ZP_00961088.1| GTP-binding protein EngA [Roseovarius nubinhibens ISM] gi|83836030|gb|EAP75328.1| GTP-binding protein EngA [Roseovarius nubinhibens ISM] Length = 479 Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust. Identities = 191/469 (40%), Positives = 292/469 (62%), Gaps = 21/469 (4%) Query: 13 VGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNCSIAKQM 72 +GKSTLFNRLV K++A+V + PG+TRD G+A + + F ++DTAG+ D + S+ +M Sbjct: 1 MGKSTLFNRLVGKRLALVDDQPGVTRDLREGEARLGDLRFTVIDTAGLEDATDDSLQGRM 60 Query: 73 NDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQRNFYE 132 TE A++ A + LF+ID++ G+TP D LRK++ +I+ +NK + A E Sbjct: 61 RRLTERAVDMADICLFVIDARTGVTPIDEVFAEILRKRSEHVILAANKAEGAAADAGVIE 120 Query: 133 IYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEESPKENIT-- 190 Y L E + +SAEH G ++L+S + PL + +++P+ ++T Sbjct: 121 AYGLGLGEPIRLSAEHGEGLNDLYSQLM----------PLADGYAERARQDAPETDVTLT 170 Query: 191 -SEGKSSVKNI------SKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 E ++ + ++PL++AVVGRPN GKSTLIN++LG RLLTG ++GITRD++S Sbjct: 171 EEEAEAGAPDDPHKPTEARPLQVAVVGRPNAGKSTLINKILGEERLLTGPEAGITRDAIS 230 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + NW P+ +FDTAGMRK +++ E LE+ +V +++V+ E +VLLDA IPFE+QD Sbjct: 231 LKMNWDGVPMRVFDTAGMRKKAKVQEKLEKLSVSDGLRAVKFAEVVVVLLDAAIPFEQQD 290 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 LRI D G AVV+A+NKWD+ +K L+ L+ + LPQ+ + T+S +TG G Sbjct: 291 LRIADLAEREGRAVVVAVNKWDIEDEKQEKLRALKEAFERLLPQLRGAPLVTVSAKTGRG 350 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 LD L ++++ + +W R++T+ LN WL Q+PPP R +L+Y+TQ ++ PP F Sbjct: 351 LDRLHAAIVKAHDVWNRRVSTAQLNRWLTGMLEQHPPPAPSGRRIKLRYMTQAKTRPPGF 410 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIR--MCFQSSKNPYIKK 470 ++ C+ K+PESY RYL+N LR +F + G PIR M QS KNPY K Sbjct: 411 VVMCSNTEKMPESYTRYLVNGLREDFDMPGTPIRLHMRSQSDKNPYKSK 459 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 44/170 (25%), Positives = 78/170 (45%), Gaps = 15/170 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PN GKSTL N+++ ++ + G GITRD + + +GV + DTAG+ K Sbjct: 193 VAVVGRPNAGKSTLINKILGEERLLTGPEAGITRDAISLKMNWDGVPMRVFDTAGMR--K 250 Query: 65 NCSIAKQMN----DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + +++ A+ A +++ L+D+ D I ++ +++ NK Sbjct: 251 KAKVQEKLEKLSVSDGLRAVKFAEVVVVLLDAAIPFEQQDLRIADLAEREGRAVVVAVNK 310 Query: 121 MDTRIAQ----RNFYEIYS-----LDFKEIVEISAEHDLGTSELHSVIFK 161 D + R E + L +V +SA+ G LH+ I K Sbjct: 311 WDIEDEKQEKLRALKEAFERLLPQLRGAPLVTVSAKTGRGLDRLHAAIVK 360 >gi|87198885|ref|YP_496142.1| GTP-binding protein EngA [Novosphingobium aromaticivorans DSM 12444] gi|123490336|sp|Q2GA15|DER_NOVAD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|87134566|gb|ABD25308.1| Small GTP-binding protein domain [Novosphingobium aromaticivorans DSM 12444] Length = 461 Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust. Identities = 194/471 (41%), Positives = 287/471 (60%), Gaps = 20/471 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + I+G PNVGKSTLFNRLV KK+A+V + PG+TRDR +G A + G+ F IVDTAG D Sbjct: 5 VIIIGRPNVGKSTLFNRLVGKKLALVDDQPGVTRDRRFGDASLLGLDFTIVDTAGWEDED 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 ++ +M QTE ++ A + LF+ID++AG+TP D I +LR+ +PI++++NK + R Sbjct: 65 PSTLPGRMRKQTEASLVGADVALFVIDARAGVTPLDEEIARYLRQSTVPIVLMANKAEGR 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 +E +SL F E V SAEH G ++L + + +K + E E EE Sbjct: 125 AGDPGIFEAFSLGFGEPVAFSAEHGQGLADLFEALLPLIGEKQDDEDGEGEEAEDEEEEF 184 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 E++ L++A+VGRPN GKSTLIN+LLG +RLLTG ++GITRDS++I Sbjct: 185 DPESV--------------LKLAIVGRPNAGKSTLINKLLGEDRLLTGPEAGITRDSIAI 230 Query: 245 SWNWKN------HPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 W W + P+ + DTAGMRK +++T+ LE+ +V + ++ E +++LDAT Sbjct: 231 DWQWFDPEREAYRPVRLIDTAGMRKKAQVTDKLEKLSVADARHAIDFAEVVVLVLDATRG 290 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 E QDL+I V G A+++A+NKWD+ D L Q +R + L Q+ + + ISG Sbjct: 291 LEHQDLKIASMVIEEGRALMIAINKWDVAEDPSGLFQGIRKALDEGLAQVRGVPLLAISG 350 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 RTG+GLD+L+ + EI W R+ T+ LN W NPPP R +L+YITQ ++ Sbjct: 351 RTGKGLDELLKAAFEIRAAWSKRVPTAALNRWFDDALAANPPPAPGGRRIKLRYITQAKT 410 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIK 469 PP F++F T +++PESY+RYLIN +R +PIR+ +S KNP+ K Sbjct: 411 RPPGFVLFGTRLDQLPESYRRYLINGIRRELGFDAVPIRLTLRSPKNPFAK 461 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 46/184 (25%), Positives = 79/184 (42%), Gaps = 29/184 (15%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFN-------- 53 + +AIVG PN GKSTL N+L+ + + G GITRD + I+ F+ Sbjct: 189 VLKLAIVGRPNAGKSTLINKLLGEDRLLTGPEAGITRDSIA----IDWQWFDPEREAYRP 244 Query: 54 --IVDTAGIADGKNCSIAKQMND----QTELAINEAHLILFLIDSKAGITPYDHAITSFL 107 ++DTAG+ K + ++ AI+ A +++ ++D+ G+ D I S + Sbjct: 245 VRLIDTAGMR--KKAQVTDKLEKLSVADARHAIDFAEVVVLVLDATRGLEHQDLKIASMV 302 Query: 108 RKKNIPIIIVSNKMDTRIAQRNFYEIYSLDFKE---------IVEISAEHDLGTSELHSV 158 ++ ++I NK D ++ E ++ IS G EL Sbjct: 303 IEEGRALMIAINKWDVAEDPSGLFQGIRKALDEGLAQVRGVPLLAISGRTGKGLDELLKA 362 Query: 159 IFKI 162 F+I Sbjct: 363 AFEI 366 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 44/170 (25%), Positives = 72/170 (42%), Gaps = 11/170 (6%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP 264 ++ ++GRPNVGKSTL NRL+G L Q G+TRD + I DTAG Sbjct: 4 QVIIIGRPNVGKSTLFNRLVGKKLALVDDQPGVTRDRRFGDASLLGLDFTIVDTAGWEDE 63 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +L + K++ S+ + + ++DA D I + + +VL NK Sbjct: 64 D--PSTLPGRMRKQTEASLVGADVALFVIDARAGVTPLDEEIARYLRQSTVPIVLMANKA 121 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEI 374 + + + + +G S G+GL DL ++L + Sbjct: 122 EGRAGDPGIFEAF---------SLGFGEPVAFSAEHGQGLADLFEALLPL 162 >gi|149186494|ref|ZP_01864806.1| GTP-binding protein EngA [Erythrobacter sp. SD-21] gi|148829721|gb|EDL48160.1| GTP-binding protein EngA [Erythrobacter sp. SD-21] Length = 479 Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust. Identities = 185/470 (39%), Positives = 283/470 (60%), Gaps = 21/470 (4%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+ I+G PNVGKSTLFNRL+ KK+A+V + PG+TRDR G A I G+ F +VDTAG D Sbjct: 8 TVIIIGRPNVGKSTLFNRLIGKKLALVDDQPGVTRDRRMGDAEIAGLEFTVVDTAGWEDD 67 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 S+ +M QTE+++ A LF++D++AGITP D I +LR +++P+++ NK + Sbjct: 68 DPESLPGRMRKQTEVSLEGADAALFVVDARAGITPLDEEIARWLRSQDVPVVLACNKAEG 127 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 R A+ E YSL E + ISAEH G ++L + ++ I K Sbjct: 128 RAAEPGILESYSLGLGEPMGISAEHGEGIADLFAGLWPIIGAKSEAA------------- 174 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 + +E + +++S PL++A+VGRPN GKSTLINRLLG +RLLTG ++GITRDS++ Sbjct: 175 --EAAAQAEAERDEEDLSGPLKLAIVGRPNAGKSTLINRLLGEDRLLTGPEAGITRDSIA 232 Query: 244 ISWNW------KNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATI 297 + W+W + I + DTAGMRK +++TE LE+ +V + +++ E ++LLDAT Sbjct: 233 VDWDWFDPKANEQREIRLIDTAGMRKRAKVTEKLEKLSVADAKRAIDFAEVVVLLLDATK 292 Query: 298 PFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTIS 357 E QDL+I G A+++A+NKWD+ + L +R + L Q+ + + +S Sbjct: 293 GLEHQDLKIASQALEEGRALMVAINKWDIAENASYLFNGIREALNEGLSQVRGVPLFAVS 352 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 +TG+GLD ++ + E+ + W R+ T+ LN W NPPP R +L+YITQ Sbjct: 353 AKTGKGLDTMLSAAFELREAWSRRVPTAALNRWFDDALEANPPPAPGGRRIKLRYITQAS 412 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 PP F++F T + +P+SY+RYL+N +R +P+R+ +S KNPY Sbjct: 413 VRPPRFVVFGTRLDDLPKSYERYLVNGIRAKLGFDAVPVRVVLKSPKNPY 462 >gi|326385799|ref|ZP_08207428.1| GTP-binding protein EngA [Novosphingobium nitrogenifigens DSM 19370] gi|326209778|gb|EGD60566.1| GTP-binding protein EngA [Novosphingobium nitrogenifigens DSM 19370] Length = 454 Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust. Identities = 186/469 (39%), Positives = 280/469 (59%), Gaps = 25/469 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + I+G PNVGKSTLFNRLV KK+A+V + PG+TRDR +G A + G+ F IVDTAG D Sbjct: 4 VVIIGRPNVGKSTLFNRLVGKKLALVDDQPGVTRDRRFGDAELLGLAFTIVDTAGWEDDD 63 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 S+ +M QTE A+ A + LF+ID++AG+TP D I L + ++P+++++NK + R Sbjct: 64 PSSLPGRMRAQTEAALEGATVALFVIDARAGLTPLDEEIGRHLHESSVPVVLLANKAEGR 123 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 +E Y+L F + + SAEH G ++L + L +I + EE Sbjct: 124 AGDSGLFESYALGFGDPIAFSAEHGEGLADLFQAL------------LPLIGEPEEEEER 171 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 ++ + KS +K +AVVGRPN GKSTLINRLLG +RLLTG ++GITRDS+++ Sbjct: 172 SEDEPEYDPKSVLK-------LAVVGRPNAGKSTLINRLLGEDRLLTGPEAGITRDSIAV 224 Query: 245 SWNWKN------HPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 W W++ PI + DTAGMRK +++ + LE+ +V + +++ E ++LLDAT Sbjct: 225 DWEWRDPATGESRPIRLIDTAGMRKKAQVVDKLERLSVADARRAIDFAEVVVLLLDATRG 284 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 E QDL+I V G A+++A+NKWD+ D L +R L Q+ + + +S Sbjct: 285 LEHQDLKIASMVLEEGRALMIAINKWDVAEDASGLFNGVRAALDDGLAQVRGLPLVAVSA 344 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 RTG+GLD ++ + + W R+ T+ LN W NPPP R +L+YITQ ++ Sbjct: 345 RTGKGLDQMLGAAFSLRDAWSRRVPTAALNRWFDDALTANPPPAPGGRRIKLRYITQAKT 404 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 PP F++F T + +PESY+RYL+N +R +PIR+ +S KNP+ Sbjct: 405 RPPGFVLFGTRLDMLPESYRRYLVNGIRRELGFDAVPIRLTLRSPKNPF 453 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 63/131 (48%), Gaps = 12/131 (9%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLY------GQAIINGVIFNIV 55 + +A+VG PN GKSTL NRL+ + + G GITRD + A ++ Sbjct: 183 VLKLAVVGRPNAGKSTLINRLLGEDRLLTGPEAGITRDSIAVDWEWRDPATGESRPIRLI 242 Query: 56 DTAGIADGKNCSIAKQMN----DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKN 111 DTAG+ K + ++ AI+ A +++ L+D+ G+ D I S + ++ Sbjct: 243 DTAGMR--KKAQVVDKLERLSVADARRAIDFAEVVVLLLDATRGLEHQDLKIASMVLEEG 300 Query: 112 IPIIIVSNKMD 122 ++I NK D Sbjct: 301 RALMIAINKWD 311 >gi|294677824|ref|YP_003578439.1| GTP-binding protein EngA [Rhodobacter capsulatus SB 1003] gi|294476644|gb|ADE86032.1| GTP-binding protein EngA [Rhodobacter capsulatus SB 1003] Length = 499 Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust. Identities = 198/472 (41%), Positives = 300/472 (63%), Gaps = 6/472 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +T+AIVG PNVGKSTLFNRLV K++A+V + PG+TRD G A + + F ++D+AG+ Sbjct: 1 MSFTLAIVGRPNVGKSTLFNRLVGKRLALVDDTPGVTRDLREGDARLGDLRFVVIDSAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 ++ S+ +M TE A+ EA + LFLID++ G+TP D LRKKN +I+ +NK Sbjct: 61 ELAEDDSLQGRMRRLTERAVEEADVCLFLIDARVGVTPADEIFADILRKKNAHVILAANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + E +SL E + +SAEH G +L+ ++ + + +M E + Sbjct: 121 AEGNAGAAGALEAWSLGLGEPIALSAEHGQGLDDLYDILQPLADGFAARNVAQMPEVDV- 179 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 + P E++ + + ++PL++AV+GRPN GKSTLIN++LG +RLLTG ++GITRD Sbjct: 180 --DLP-EDLDEDAPIRMPTEARPLQLAVIGRPNAGKSTLINKILGEDRLLTGPEAGITRD 236 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 ++S++ + P+ I+DTAGMRK +R+++ LE+ +V +++VR E +VLLD IPFE Sbjct: 237 AISVTKTFMGTPMRIWDTAGMRKKARVSDKLEKLSVADGLRAVRFAEVVVVLLDVNIPFE 296 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 QDLRI D G AVV+A NKWD+ +K L++LR + LPQ+ + T+S +T Sbjct: 297 VQDLRIADFAETEGRAVVVAANKWDLEEEKTEKLKELRENFERLLPQLRGAPLVTVSAKT 356 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G+GLD L ++L+ ++W RI+T+ LN+WL +PPP R +L+YITQ ++ P Sbjct: 357 GKGLDRLHNAILKAYEVWNRRISTAKLNNWLGAMTEAHPPPAPGGRRIKLRYITQAKTRP 416 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCF--QSSKNPYIKK 470 P F+I T ++IPESY RYL+N LR +F + G PIR+ F Q S NPY ++ Sbjct: 417 PGFVIKATHTDQIPESYSRYLVNGLRADFDMPGTPIRLYFRDQGSTNPYKER 468 >gi|304319918|ref|YP_003853561.1| GTP-binding protein EngA [Parvularcula bermudensis HTCC2503] gi|303298821|gb|ADM08420.1| GTP-binding protein EngA [Parvularcula bermudensis HTCC2503] Length = 459 Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust. Identities = 180/475 (37%), Positives = 286/475 (60%), Gaps = 23/475 (4%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +AI+G PNVGKSTLFNRL +K+A+V + PG+TRDR +A + ++DTAG+ Sbjct: 1 MRIRLAIIGRPNVGKSTLFNRLAGRKLALVHDEPGVTRDRREIEATFGDLDLTLIDTAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + + S+ +M TE AI A L LFLID++AG+T D + LR P+I+V+NK Sbjct: 61 EEAQQGSLQARMRAGTEKAIGLADLSLFLIDARAGVTAQDEELAQMLRSAGRPVIVVANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + R + YE Y L + V ISAEH G ++L+ + + +H Sbjct: 121 TEGR-GEEGAYEAYRLGLGDPVPISAEHGEGMADLYQAVISKLAESGIDH---------- 169 Query: 181 NEESPKENITSEGKS-SVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITR 239 I E ++ + + KPLR+A+VGRPN GKSTL+N+LLG +R+LTG ++GITR Sbjct: 170 -------QIKEEAETLAWDDPRKPLRLAIVGRPNAGKSTLVNQLLGEDRVLTGPEAGITR 222 Query: 240 DSVSISWNW----KNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDA 295 D++S W + ++ P+++FDTAG+R+ +++ + LE+ +V +++++R E +L+DA Sbjct: 223 DTISAEWRYVADDRDWPVKLFDTAGLRRRAKVQDKLEKLSVGDTLRAIRFAEVVALLIDA 282 Query: 296 TIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINT 355 T PFEKQDL+I D G A+V+ NKWD++ DK + LR A + LPQ + Sbjct: 283 TQPFEKQDLQIADLALKEGRALVIVANKWDLIDDKDEAARALREMAGRLLPQAPGAPVVL 342 Query: 356 ISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQ 415 +S +TG G+D M V+++ + W ++ TS LN+WL ++PPP + R ++++I Q Sbjct: 343 LSAKTGRGIDRFMPHVVKVYRDWNAQVRTSDLNTWLAAAVAKHPPPAVGGRRIKIRFIAQ 402 Query: 416 IQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 + + PP+F+ C + +PESYKRYL+ +R F + +P+R+ + NPY+ K Sbjct: 403 VNTRPPTFMAHCQRADYLPESYKRYLVGGIREAFGIDAVPVRLFLRKGDNPYVDK 457 >gi|300022385|ref|YP_003754996.1| ribosome-associated GTPase EngA [Hyphomicrobium denitrificans ATCC 51888] gi|299524206|gb|ADJ22675.1| ribosome-associated GTPase EngA [Hyphomicrobium denitrificans ATCC 51888] Length = 460 Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust. Identities = 181/466 (38%), Positives = 283/466 (60%), Gaps = 7/466 (1%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNRL + A+V + PG+TRDR G + GV ++DTAG+ + + Sbjct: 2 VAIVGRPNVGKSTLFNRLTGTRAALVSDLPGLTRDRRDGVTDLFGVNLRLIDTAGLEEAR 61 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 SIA +M QTE AI A L+LF+ID++AG+T D + R+ P+++V+NK + R Sbjct: 62 QGSIADRMRKQTEQAIEAADLVLFVIDARAGVTGADTSFARIARQSGKPVVLVANKAEGR 121 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + +SL + ISAEH G +L + IF K P + K+ + Sbjct: 122 KGTDGVLDAFSLGLGAPIAISAEHGEGIGDLATDIFAALGLKIP-------KTGKKGRDD 174 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 + K+ ++P+R+A+VGRPN GKSTL+N LLG +R++TG + G+TRDSV+ Sbjct: 175 DDPAAAGDAKTRPPAPARPIRVAIVGRPNAGKSTLVNALLGEDRMITGPEPGLTRDSVAS 234 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 ++K I +FDTAG+R+ ++ITE+ E+ +++S+R E ++L+DA PFE QDL Sbjct: 235 ELSYKGQSILLFDTAGLRRKAKITETAEKLAASDAVRSIRFAEVVVLLIDAERPFEHQDL 294 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 I V G A+V+A+NKWD++ +K L++L+ ++L Q+ ++ + IS R+ GL Sbjct: 295 TIGHRVTEEGRALVVAINKWDLIPEKQKALRELKKTVAESLAQVPNVSVVAISARSESGL 354 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 D LM ++++ + W R+ T LN WL++ ++ PP R +++Y+TQ + PP+F+ Sbjct: 355 DQLMSAIIKTHATWNRRVPTPQLNRWLEEALSRHAPPAAAGRRIKIRYVTQPSTRPPTFV 414 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 FC + +P+SY +YL N LR F L G+PIR + +NPY KK Sbjct: 415 AFCQRADALPKSYIKYLTNSLREAFDLPGVPIRFSLRKGENPYAKK 460 >gi|312114899|ref|YP_004012495.1| ribosome-associated GTPase EngA [Rhodomicrobium vannielii ATCC 17100] gi|311220028|gb|ADP71396.1| ribosome-associated GTPase EngA [Rhodomicrobium vannielii ATCC 17100] Length = 464 Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust. Identities = 179/467 (38%), Positives = 288/467 (61%), Gaps = 13/467 (2%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M YT+AI+G PNVGKSTLFNRL +++A+V + PG+TRDR Q IN + DTAG+ Sbjct: 1 MAYTVAIIGRPNVGKSTLFNRLAGRRLALVDDLPGLTRDRKETQIRINRRDVVLTDTAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 D + SIA +M +Q+E AI E+ LILF+ID++A +T D I +R P I+V+NK Sbjct: 61 EDAEPGSIAARMREQSEQAIAESDLILFVIDARAELTSVDRGIADLVRSSGKPFILVANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 ++R + +Y Y L E + +SAEH++G +L + + + L+ I + Sbjct: 121 SESRASDAGYYGSYELGLGEPLPVSAEHNMGLGDLMAEV---------TNRLDEIATARG 171 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 +E P+++ +E ++ ++PL++A+ GRPN GKSTL+N LLG R++TG ++G+TRD Sbjct: 172 DEPEPEDDELTEEQAR----ARPLKLAIAGRPNAGKSTLVNALLGEERMITGPEAGLTRD 227 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 +++ + W+ + ++DTAG+R+ +RI E V +++++R E ++LLDA P + Sbjct: 228 AIAADFQWRGRKVRLYDTAGLRRKARINVRSETLAVGDALRAIRFAEIVVLLLDAQSPLD 287 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 KQDL I D V G +V A+NKWD+V + L +LR A + LPQ+ + +S + Sbjct: 288 KQDLTIADLVEREGRGLVFAVNKWDLVPEPQAYLAELRKSAERILPQLAGAPLVPVSAIS 347 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G GLD +M + ++N+ W RI+T+ LN W ++ PP + R +L+YITQ + P Sbjct: 348 GRGLDKVMDAAFKVNEAWNKRISTAALNRWFATALDKHQPPAVAGRRLKLRYITQSNARP 407 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 P+F++F + P +P+SY RYL+N L+ +F L P+R+ + + NPY Sbjct: 408 PTFIVFSSRPEALPDSYLRYLVNDLKKSFGLGPSPVRLHVRKTNNPY 454 >gi|114328959|ref|YP_746116.1| GTP-binding protein EngA [Granulibacter bethesdensis CGDNIH1] gi|114317133|gb|ABI63193.1| GTP-binding protein [Granulibacter bethesdensis CGDNIH1] Length = 483 Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust. Identities = 186/469 (39%), Positives = 293/469 (62%), Gaps = 10/469 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI G PNVGKSTLFNRLV ++MA+V + PG+TRDR +A++ G + ++DTAG+ + Sbjct: 22 VAIAGRPNVGKSTLFNRLVGRRMALVADTPGVTRDRKEAEAMLRGRLVKLIDTAGLEEAP 81 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +IA +M +E A+++A L++F++D+++GITP D S+LR++N P+++V+NK + R Sbjct: 82 QDTIAGRMRQSSETAVSQADLVVFVVDARSGITPADTHFASWLRRQNRPVLLVTNKAEAR 141 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 A E Y L + + +SAEH LG ++L I + P +M + +R E Sbjct: 142 GAGAEALEAYRLGLGDPLAVSAEHGLGIADLMREIADRLSTDA-DRPSDMPKRKRRGEAE 200 Query: 185 P---KENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 +ENI +G KPL++A+VGRPN GKSTL+NRLLG +R++TG + G+TRDS Sbjct: 201 AWEDEENIVEQGPP------KPLKLAIVGRPNAGKSTLLNRLLGEDRVITGPEPGLTRDS 254 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 +S++ + IE+ DTAG+R+ +RI ESLE+ +V S+++++ E ++ +DAT + Sbjct: 255 ISVTLSDDIGEIELVDTAGLRRRARIDESLEKMSVSASIEALKMAEIVVLAVDATEGLHE 314 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTG 361 QDL+I V G VLAL KWD V D+ + + + +L Q I + T+SG TG Sbjct: 315 QDLQIARLVEREGRGAVLALTKWDAVEDRGKAARAISDRLETSLTQCRGIPVVTLSGLTG 374 Query: 362 EGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 G+ L+ +V E + +W R+ T LN W + ++ PP + R +L+Y+TQ ++ PP Sbjct: 375 SGVQRLLPAVREAHAIWNKRVATGELNRWFEAMLERHQPPLVDGRRLKLRYMTQAKARPP 434 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +F++F T ++PE Y+RYL+N LR F L G PIR+ + +KNPY K Sbjct: 435 TFVLFGTRAEQLPEDYQRYLVNGLREAFGLKGTPIRLQLRGTKNPYADK 483 >gi|254294311|ref|YP_003060334.1| GTP-binding protein EngA [Hirschia baltica ATCC 49814] gi|254042842|gb|ACT59637.1| small GTP-binding protein [Hirschia baltica ATCC 49814] Length = 483 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 183/473 (38%), Positives = 287/473 (60%), Gaps = 9/473 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +AIVG PNVGKSTLFNRLV KK+A+V + PG+TRDR + + + +++DTAG Sbjct: 1 MALKVAIVGRPNVGKSTLFNRLVGKKIALVDDQPGVTRDRKEARGRLGDLELDLIDTAGF 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 D + S+ +M QTE+AI EA + L++ID++ G+TP D + LR+ + P I+V+NK Sbjct: 61 DDVNDASLEARMRRQTEMAIAEADVSLYVIDARVGVTPIDRVFSKLLRQADKPTILVANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + R E +SL F E V +SAEH G S+L+ + + + L E + Sbjct: 121 CEGRQGDVGLTEAFSLGFNEPVALSAEHGEGMSDLYQALLEAAPE------LTSPEAEQE 174 Query: 181 NEESPKENITS---EGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGI 237 E + ++ E + +P++ VVGRPN GKSTL+N LL +RLLTG ++GI Sbjct: 175 EERAWDDDFVEFDPEAEEIEAPPERPMKFTVVGRPNAGKSTLLNSLLQSDRLLTGPEAGI 234 Query: 238 TRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATI 297 TRDSV+++W ++ + + DTAG+RK +++ E LE+ + +++ S++ + +++D+ Sbjct: 235 TRDSVTVAWEYEGREMRLVDTAGLRKKAKVQERLEKMSTGETIHSIKYADVVAIVMDSRD 294 Query: 298 PFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTIS 357 FEKQDL+I D V G VV KWD+V + L ++L KA + LPQ + T+S Sbjct: 295 AFEKQDLQIADLVLREGRGVVFVCTKWDLVENGGELRKELEDKARRLLPQAKGAPLLTVS 354 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 G TG LD +MV+ ++ + W RI T LN+W+Q T ++PPP + + +Y+ Q++ Sbjct: 355 GETGRNLDKMMVAAAKVFEDWSARIKTRDLNNWMQHTIQKHPPPAPGGQRIKPRYMAQMK 414 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 + PP+F++ + +++PESYKRYL+N LR F L G+PIR+ + NPY K Sbjct: 415 TRPPTFIMMASRGDQMPESYKRYLVNGLREAFDLPGVPIRLIIRQGANPYADK 467 >gi|288958550|ref|YP_003448891.1| GTP-binding protein [Azospirillum sp. B510] gi|288910858|dbj|BAI72347.1| GTP-binding protein [Azospirillum sp. B510] Length = 464 Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust. Identities = 178/467 (38%), Positives = 283/467 (60%), Gaps = 6/467 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +T+ +VG PNVGKSTLFNRL KK+A+V + PG+TRD A + G+ F +VDTAG+ Sbjct: 1 MSFTVVLVGRPNVGKSTLFNRLAGKKLALVDDTPGVTRDWRSAPAHVGGLSFTVVDTAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 D + S+ +M QTE A+ A + LF+ID++AG+TP D + LR+ P+++V+NK Sbjct: 61 EDVTDDSLEARMRRQTEQALARADVALFIIDARAGVTPLDRHFANLLRRGKTPVLLVANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + R Q +E Y L + + +SAEH G ++L + Y + Sbjct: 121 TEGRAGQPGMFEAYELGLGDPIPLSAEHGEGMADLVEALLP-----YAPAEEAGEAEERD 175 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 + P + + + +++SKP++IA+VGRPNVGKSTL+N LLG R+LTG ++G+TRD Sbjct: 176 DGFDPSIPVGDQPEPE-EDLSKPIQIAIVGRPNVGKSTLLNSLLGEERVLTGPEAGMTRD 234 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 ++++ W W++ ++ DTAGMR+ +R+ E +E+ V S++ +R ++++DA + Sbjct: 235 AITVDWEWRDRRFKLVDTAGMRRRARVDEKVEKLAVADSLRVIRMANVVVLVVDAGAILD 294 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 KQDL I V + G A+V+A+NKWD V D+ L+ + K L I + + TIS Sbjct: 295 KQDLTIARLVISEGRALVIAVNKWDTVDDRAMALRQVEDKLQAALGYIKGVTVVTISALK 354 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G L+ L+ VLE +W RI T+ LN W++ +PPP + R +++Y+TQ+++ P Sbjct: 355 GHKLETLLDGVLETYTVWNRRIPTAQLNRWIEGVLEHHPPPLVEGRRVKIRYVTQVKTRP 414 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 P+F +F P +PESY+RYL LR +F + G+P+R+ + KNPY Sbjct: 415 PTFALFVNKPLDLPESYQRYLTTHLRESFDMPGVPVRLLLRKGKNPY 461 >gi|85707619|ref|ZP_01038685.1| predicted GTPase [Erythrobacter sp. NAP1] gi|85689153|gb|EAQ29156.1| predicted GTPase [Erythrobacter sp. NAP1] Length = 475 Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust. Identities = 184/473 (38%), Positives = 279/473 (58%), Gaps = 21/473 (4%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M + I+G PNVGKSTLFNRLV KK+A+V + PG+TRDR G A I G+ F IVDTAG Sbjct: 1 MKPQVIIIGRPNVGKSTLFNRLVGKKLALVDDQPGVTRDRRMGDAEIAGLKFTIVDTAGW 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 D ++ +M QTE ++ A LF++D++AG+TP D I +LR+ ++PI++V+NK Sbjct: 61 EDEDELTLPGRMRKQTEASLEGADAALFVVDARAGLTPLDEEIARYLREHDVPIVLVANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + + E YSL F E + +SAEH G ++L ++ I +K +E Sbjct: 121 AEGSAGESGVLEAYSLGFGEPLAVSAEHGEGIADLFGGLWPIIGEKADAAEVEDEIEESE 180 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 +E++P PL++A+VGRPN GKSTLINRLLG +RLLTG ++GITRD Sbjct: 181 DEDAP---------------LGPLKLAIVGRPNAGKSTLINRLLGEDRLLTGPEAGITRD 225 Query: 241 SVSISWNW------KNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLD 294 S++I W W + I + DTAGMRK + E +E+ +V + ++V E ++LLD Sbjct: 226 SIAIDWEWTDPKSGETREIRLIDTAGMRKKRNVVEKIEKLSVADARRAVDFAEVVVLLLD 285 Query: 295 ATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYIN 354 AT E QDL+I G A+++A+NKWD+ + +L ++ L Q+ + + Sbjct: 286 ATQGLEHQDLKIASLALEEGRALMVAINKWDVAEEASSLFNGIKQALHDGLAQVRGLPVL 345 Query: 355 TISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYIT 414 ++S +TG+GLD ++ + + + W R+ T+ LN W NPPP R +L+YIT Sbjct: 346 SVSAKTGKGLDAMLGAAFTLRESWSKRVPTAALNRWFDDALDANPPPAPGGRRIKLRYIT 405 Query: 415 QIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 Q + PP F+IF + + +P+SY+RYL+N +R +P+R+ +S KNPY Sbjct: 406 QAGTRPPRFVIFGSRLDDLPKSYERYLVNGIRSKLGFEAVPVRVTLKSPKNPY 458 >gi|83594414|ref|YP_428166.1| GTP-binding protein EngA [Rhodospirillum rubrum ATCC 11170] gi|83577328|gb|ABC23879.1| Small GTP-binding protein domain [Rhodospirillum rubrum ATCC 11170] Length = 500 Score = 372 bits (956), Expect = e-101, Method: Compositional matrix adjust. Identities = 187/500 (37%), Positives = 292/500 (58%), Gaps = 31/500 (6%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 ++T+AI+G PNVGKSTLFNRL +++A+V + PG+TRDR G+A + ++F +VDTAG+ Sbjct: 1 MFTVAIIGRPNVGKSTLFNRLCGRRLAIVHDMPGVTRDRREGKASLADLVFRVVDTAGLE 60 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 + + +M QT+ A++EAH+ L LIDS+AG+TP D LRK IP+I+V+NK Sbjct: 61 EAGPEVLEGRMRQQTDRALSEAHVALMLIDSRAGVTPLDAHFAEILRKAPIPVILVANKC 120 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLE-------- 173 + + FYE YS+ + V +SAEH G S L+ + I+ + Sbjct: 121 EGGAGKPGFYESYSMGLGDPVPLSAEHGEGLSLLYEALMPIYDAHMAQEAKDEADAVRAA 180 Query: 174 MIENNKRNEESPKENITS------------------EGKSSVKNI----SKPLRIAVVGR 211 +E + P + S E SV+ +P+++A++GR Sbjct: 181 FLETEAASAAKPYIDFASLEPDEVPEDDDSDPSQDPEDDFSVEAFDPRGERPIQMAIIGR 240 Query: 212 PNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESL 271 PN GKSTLINRL+G +RL+TG ++G+TRD++ + W W + DTAG+R+ +R+ SL Sbjct: 241 PNTGKSTLINRLIGDDRLVTGPEAGVTRDAIEVDWEWGGRRFRLVDTAGLRRKARVENSL 300 Query: 272 EQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKL 331 E+ V ++ ++R E +++LDA + ++QDL I V + G A+V+A+NKWD +D+ Sbjct: 301 EKLMVADTLNAIRLAEVCVLMLDANMVMDRQDLTIARLVIDEGRALVIAVNKWDACADRK 360 Query: 332 NLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWL 391 LQ L + +L Q+ + T+S G GL+ LM + LE + W R+ TS N WL Sbjct: 361 AALQRLADRLETSLAQVRGVPFVTLSALEGHGLNRLMDAALEAHAKWNRRVPTSRFNRWL 420 Query: 392 QKTQLQNP-PPTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFS 450 + ++P P R R++Y TQ + PP+F +F T P+ +PESY RYL + LR +F Sbjct: 421 KGMIDRHPLPMGKHGRRLRIRYGTQAKIRPPTFALFMTRPDDLPESYVRYLNSGLREDFD 480 Query: 451 LSGIPIRMCFQSSKNPYIKK 470 ++G PIR+ F+++KNPY K Sbjct: 481 MAGTPIRLLFRATKNPYADK 500 >gi|163797497|ref|ZP_02191448.1| GTP-binding protein engA [alpha proteobacterium BAL199] gi|159177246|gb|EDP61805.1| GTP-binding protein engA [alpha proteobacterium BAL199] Length = 467 Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust. Identities = 183/468 (39%), Positives = 278/468 (59%), Gaps = 4/468 (0%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +A++G PNVGKSTLFNRL + A+V + PG+TRDR G I + F ++DTAG+ Sbjct: 1 MSIKVAVIGRPNVGKSTLFNRLTGTRHALVDDTPGVTRDRREGDGRIADLSFRVIDTAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 D + S+ +M QTE A+ EA L+ LID++AGITP D +LR+ ++P+++++NK Sbjct: 61 EDAFDDSLEARMRRQTERAVAEADLVFMLIDARAGITPLDSHFADWLRRVDVPVVVLANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + R E YSL + V +SAEH G EL+ +I ++ ++K E Sbjct: 121 CEGRAGAAGLAEAYSLGLGDPVPVSAEHGEGMGELYDIIRELAERKGEFGAPEPEPEPAW 180 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 E + + E + V P+R+A+VGRPNVGKSTL+NRL+G +RLLTG ++GITRD Sbjct: 181 PGEEVELSDEMEAEPEVG----PIRLAIVGRPNVGKSTLVNRLIGEDRLLTGPEAGITRD 236 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 ++ + W +++ PI + DTAGMR+ +R+ E LE+ + + ++VR +++LD + E Sbjct: 237 AIEVEWQYRDRPIRLVDTAGMRRKARVQEKLERLSTADTRRAVRYAHVVLLVLDGEMMLE 296 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 KQDL I G A+V+A NKWD++ DK Q LR + +L Q+ + +S Sbjct: 297 KQDLTIARMALEEGRALVIAANKWDVIQDKNAASQMLRDRLDTSLTQVRGVPWVPVSAVR 356 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G L L+ +VLE W TRI T+ LN WL+ +PPP R +++Y+TQ ++ P Sbjct: 357 GTNLTKLLDAVLETYDRWNTRIPTAKLNRWLEGMLEAHPPPLAKGRRVKIRYMTQAKARP 416 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYI 468 P+F F + ++P+SY RYL LR F L G+PIR+ + NPY+ Sbjct: 417 PTFAAFVSQATELPDSYVRYLTGGLRDEFGLVGVPIRLYLRQRANPYV 464 >gi|209964703|ref|YP_002297618.1| GTP-binding protein EngA [Rhodospirillum centenum SW] gi|209958169|gb|ACI98805.1| GTP-binding protein, putative [Rhodospirillum centenum SW] Length = 478 Score = 369 bits (948), Expect = e-100, Method: Compositional matrix adjust. Identities = 187/483 (38%), Positives = 283/483 (58%), Gaps = 31/483 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AIVG PNVGKSTLFNRLV K++A+V + PG+TRD G+A + G+ +VDTAG+ + Sbjct: 9 TVAIVGRPNVGKSTLFNRLVGKRLALVDDTPGVTRDWRAGEARLAGIELTVVDTAGLEEV 68 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + S+ +M QTE AI A + LFLID++AG+TP DH +LRK P+I+V+NK + Sbjct: 69 FDDSLEARMRRQTERAIERADVALFLIDARAGVTPLDHHFAGWLRKGRTPVILVANKAEG 128 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + E + L E V +SAEH G ++L + P P K +E Sbjct: 129 AAGRPGLLEAFELGLGEPVPLSAEHGEGLADLVEALL-------PYEP-------KPEDE 174 Query: 184 SPKENITSEGKSSVKN----------------ISKPLRIAVVGRPNVGKSTLINRLLGYN 227 P E I ++ + K L++A+VGRPNVGKSTL+N L+G Sbjct: 175 QPDEEIWEAWDEALPDPAEAGADGAAEEPAPEEPKALQLAIVGRPNVGKSTLLNALVGEE 234 Query: 228 RLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCE 287 R+LTG ++G+TRD++++ WNW+ P+ + DTAG+R+ +R+ LE+ V +++ +R Sbjct: 235 RVLTGPEAGMTRDAIAVEWNWRGQPVRLVDTAGLRRRARVDGKLEKLAVADTLRVIRMAH 294 Query: 288 TTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQ 347 +++LDA +KQDL I V G A+V+A+NKWD V +K L+ LR + +LPQ Sbjct: 295 VVVLVLDAHAILDKQDLTIARMVVEEGRALVIAINKWDSVENKGAALKQLRDRLETSLPQ 354 Query: 348 IGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRY 407 + I TIS G+ LD+L+ + LW RI T+ LN W++ +PPP + R Sbjct: 355 VRGIPTVTISALRGQRLDELLDVTQKAYALWNKRIPTAQLNRWVRGMVETHPPPLVEGRR 414 Query: 408 NRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCF-QSSKNP 466 +++Y+TQ+++ PP+F +F P +PE Y RYL+N LR F + G+ IR+ + S NP Sbjct: 415 IKIRYMTQVKARPPTFAVFVNKPVDLPEHYLRYLVNGLREAFEMPGVTIRLLLRKGSTNP 474 Query: 467 YIK 469 Y + Sbjct: 475 YAE 477 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 48/169 (28%), Positives = 80/169 (47%), Gaps = 11/169 (6%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 L +A+VGRPNVGKSTL NRL+G L G+TRD + + + DTAG+ + Sbjct: 8 LTVAIVGRPNVGKSTLFNRLVGKRLALVDDTPGVTRDWRAGEARLAGIELTVVDTAGLEE 67 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 +SLE + +++ +++ + + L+DA D + V+L NK Sbjct: 68 V--FDDSLEARMRRQTERAIERADVALFLIDARAGVTPLDHHFAGWLRKGRTPVILVANK 125 Query: 324 WDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVL 372 + + + LL+ + +P +S GEGL DL+ ++L Sbjct: 126 AEGAAGRPGLLEAFELGLGEPVP---------LSAEHGEGLADLVEALL 165 >gi|114798294|ref|YP_759502.1| GTP-binding protein EngA [Hyphomonas neptunium ATCC 15444] gi|122942672|sp|Q0C441|DER_HYPNA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|114738468|gb|ABI76593.1| GTP-binding protein EngA [Hyphomonas neptunium ATCC 15444] Length = 510 Score = 369 bits (947), Expect = e-100, Method: Compositional matrix adjust. Identities = 182/499 (36%), Positives = 292/499 (58%), Gaps = 32/499 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +AIVG PNVGKSTLFNRLV KK+A+V + PG+TRDR + + +++DTAG Sbjct: 1 MPLKLAIVGRPNVGKSTLFNRLVGKKIALVDDQPGVTRDRKMADGRLASLPLSLIDTAGF 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + + S+ +M QTE AI EA L+LFL+D++ G+TP D LRK NIP+++ +NK Sbjct: 61 DNVNDDSLEARMRAQTEAAIAEADLVLFLVDARVGVTPEDETFAGLLRKANIPVVLAANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + R + ++ + L F E V +SAEH G +EL+ I + LE E + Sbjct: 121 AEGRAGEAGVFDAFRLGFGEPVGLSAEHGEGMAELYESIRNALGPEAYERALEEAEPDY- 179 Query: 181 NEESPKENITSE-----------------------------GKSSVKNISKPLRIAVVGR 211 E E+I + ++ V++ +P+R+A+VGR Sbjct: 180 -ERGAGEDILEKLAHIDIEDTTLSDDDLVAAIEAADIDADVAEAPVQS-DRPIRLAIVGR 237 Query: 212 PNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESL 271 PN GKSTLIN+LL +R+LTG ++GITRDS++++W W+ I + DTAG+R+ +++ E L Sbjct: 238 PNAGKSTLINQLLQSDRMLTGPEAGITRDSITVNWEWEGRQIRLVDTAGLRRKNKVQERL 297 Query: 272 EQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKL 331 E+ + ++++S++ + +++DA EKQDL+I D G VVL ++KWD V D Sbjct: 298 ERMSTAETIRSLKYADIVALVMDAHEAMEKQDLQIADLALREGRGVVLVISKWDTVEDTD 357 Query: 332 NLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWL 391 + +R A + +P G + +SG TG ++ LM +V+++ K W R T LN WL Sbjct: 358 GAARHIRDLANRLMPNAGGAPVVFLSGLTGRNIEKLMPAVVKVYKDWTARAKTGDLNRWL 417 Query: 392 QKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSL 451 + T +PPP++ + + +Y+ Q+++ PP+F++ + +++PE YKRYL+N +R F + Sbjct: 418 RHTVEHHPPPSVQGKRIKPRYMAQMKARPPTFVLIASRGDQMPEGYKRYLVNGIREAFDM 477 Query: 452 SGIPIRMCFQSSKNPYIKK 470 G+PIR+ + KNPY K Sbjct: 478 HGVPIRLFVRQGKNPYAGK 496 >gi|330994712|ref|ZP_08318635.1| GTPase Der [Gluconacetobacter sp. SXCC-1] gi|329758353|gb|EGG74874.1| GTPase Der [Gluconacetobacter sp. SXCC-1] Length = 467 Score = 368 bits (945), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 180/465 (38%), Positives = 283/465 (60%), Gaps = 5/465 (1%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + I G PNVGKST+FNRLV ++ A+V + PG+TRDR GQA + G I+DTAG+ + Sbjct: 7 VVIAGRPNVGKSTIFNRLVGRRQALVADTPGVTRDRKEGQATVRGRNIRIIDTAGLEEAA 66 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 ++ +M +E A+ A L+LF ID+++GITP D ++LR++ P+++++NK + R Sbjct: 67 PDTLYGRMRASSESAVAHADLVLFCIDARSGITPADQHFANWLRRQGRPVLLIANKAEGR 126 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 E +SL + ISAEH G ++L + I + P ++ N R Sbjct: 127 QGAAAAMEAFSLGLGAPLAISAEHGEGVADLMAEIV----DRLPPTDAPPVQKNTRRLRR 182 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 + + V+ PLR+A+VGRPN GKSTL+NRLLG R++TG + G+TRDS+++ Sbjct: 183 EQAEAAEGEEEDVRP-PGPLRLAIVGRPNAGKSTLLNRLLGEERMITGPEPGLTRDSIAV 241 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + PI++ DTAG+R+ +RI E+LE+ +V S+++++ E I++LDAT+ +QDL Sbjct: 242 MLSDDEGPIQLVDTAGLRRKARIDETLEKMSVSASIEALKMAEVVILVLDATLGVHEQDL 301 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 +I + G VLALNKWD V D+ + Q +R + +L Q+ I + S TG G+ Sbjct: 302 QIARLIEREGRCCVLALNKWDAVEDRADTRQAIRDRIEMSLAQMRGIPVVAFSALTGAGI 361 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 + L+ +V ++W R+ T LN W + ++PPP + R +L+YITQ +S PP+F+ Sbjct: 362 NKLLPTVRRAYEVWNRRVATGALNRWFEMMIERHPPPLVDGRRLKLRYITQAKSRPPTFI 421 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIK 469 +F T +++PE Y+RYL+N LR F L G PIR+ ++S NPY K Sbjct: 422 VFGTRTDQLPEDYQRYLVNGLRETFDLPGTPIRLLLRASSNPYAK 466 >gi|58040398|ref|YP_192362.1| GTP-binding protein EngA [Gluconobacter oxydans 621H] gi|58002812|gb|AAW61706.1| GTP-binding protein [Gluconobacter oxydans 621H] Length = 463 Score = 368 bits (944), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 178/466 (38%), Positives = 296/466 (63%), Gaps = 15/466 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + I G PNVGKSTLFNRLV ++ A+V + PG+TRDR G+A++ G ++DTAG+ + Sbjct: 13 VVIAGRPNVGKSTLFNRLVGRRQAIVSDMPGVTRDRKEGEALLRGRRVRLIDTAGLEEAA 72 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 ++ +M +E A+ A L+LF ID+++GITP D S+LR++N P+++++NK + + Sbjct: 73 PDTLYGRMRASSESAVAMADLVLFCIDARSGITPADAHFASWLRRQNRPVLLIANKAEGQ 132 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 E YSL + +SAEH G ++L I ++ P P E R E+ Sbjct: 133 AGTNAALEAYSLGLGTPLALSAEHGEGIADLMGEI----AERLP--PAE----KSRRREA 182 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 PK +EG+ + + PLR+A++GRPN GKSTL+N LLG R++TG ++G+TRDS+++ Sbjct: 183 PK----AEGEED-ERPAGPLRLAIIGRPNAGKSTLLNCLLGEERMITGPEAGLTRDSITV 237 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + ++ PI++ DTAGMRK +R+ + LE+ +V S+++++ E ++++DAT+ +QDL Sbjct: 238 ELHDEHGPIQLVDTAGMRKRARVEQHLEKMSVSASIEALKMAEVVVLVIDATLGVHEQDL 297 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 +I + G A V+ALNKWD V D+ + + + +L Q+ I + T S TG G+ Sbjct: 298 QIGRLIEREGRACVIALNKWDAVEDRNATKKAILDRLEISLAQVRGIPVVTFSALTGAGV 357 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 L+ +V E+ ++W +R++T LN W + ++ PP + R +L+Y+TQ+++ PP+FL Sbjct: 358 HRLLPAVREVYEIWNSRVSTGELNRWFEDALERHQPPLVDGRRLKLRYMTQVKARPPTFL 417 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +F T ++P+SYKRYL+N LR F + G+P+R+ + +KNPY +K Sbjct: 418 LFGTRAEQLPDSYKRYLVNGLRETFHMPGVPVRLQLRGTKNPYAEK 463 >gi|329114596|ref|ZP_08243355.1| GTP-binding protein EngA [Acetobacter pomorum DM001] gi|326696076|gb|EGE47758.1| GTP-binding protein EngA [Acetobacter pomorum DM001] Length = 479 Score = 367 bits (943), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 180/463 (38%), Positives = 287/463 (61%), Gaps = 8/463 (1%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + I G PNVGKSTLFNRLV ++ A+V + PG+TRDR G A+I G ++DTAG+ + Sbjct: 22 VVIAGRPNVGKSTLFNRLVGRRQALVADTPGVTRDRKEGVALIRGRYVRLIDTAGLEEAA 81 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 S+ +M +E A+ EA L+LF +D++AGITP D ++R++N P+++V+NK + R Sbjct: 82 PDSLFGRMRFSSESAVREADLVLFCVDARAGITPADEHFAQWIRRQNRPVLLVANKTEGR 141 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + E Y+L E + +SAEH G ++L +++I + P P E+ E Sbjct: 142 LGTASAMEAYALGLGEPLALSAEHGEGVTDL---MWEI-ADRLPAEP----EHKAEPEIE 193 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 +++ E + PLR+A+VGRPN GKSTL+N LLG R++TG ++G+TRDS+++ Sbjct: 194 AEDDFAVEEGEEPPRPTGPLRVAIVGRPNAGKSTLMNALLGEERMITGPEAGLTRDSIAV 253 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + EI DTAG+RK +RI ESLE+ +V ++++++ E +++LDAT+ +QDL Sbjct: 254 TLRDGDDTFEIVDTAGLRKKARIDESLEKMSVSAAIEALKMAEVAVLVLDATLGVHEQDL 313 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 +I + G A VLALNKWD V D++ + + +L Q+ + + T S TG + Sbjct: 314 QIARLIEREGRACVLALNKWDAVQDRVATRNAILDRLSISLAQMRGVPVVTFSALTGASI 373 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 L+ +V + +W R+ T LN W ++ ++ PP + R +L+YITQ++S PP+F+ Sbjct: 374 HKLLPAVRDAWTVWNARVPTGALNRWFEEMLERHQPPLVQGRRLKLRYITQVKSRPPTFV 433 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 IF T ++P+ YKRYL+N LR F L G+PIR+ + +KNPY Sbjct: 434 IFGTRAEQLPDDYKRYLVNGLRETFDLPGVPIRLQTRGTKNPY 476 >gi|83945266|ref|ZP_00957615.1| GTP-binding protein EngA [Oceanicaulis alexandrii HTCC2633] gi|83851436|gb|EAP89292.1| GTP-binding protein EngA [Oceanicaulis alexandrii HTCC2633] Length = 459 Score = 361 bits (927), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 180/466 (38%), Positives = 273/466 (58%), Gaps = 15/466 (3%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 +AIVG PNVGKSTLFNRL K +A+V + PG+TRDR + I + +VDTAG D Sbjct: 7 ALAIVGRPNVGKSTLFNRLAGKPLAIVDDRPGVTRDRREARGRIGDLELRLVDTAGYEDD 66 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 K I +M QTE A++EA + +FLID + GIT D LRK + P+I+ NK + Sbjct: 67 K-AGIEARMRAQTEAALDEADVCVFLIDGREGITAMDERFAEVLRKSHKPVILAVNKCEG 125 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + E + L E V +SA H G +L++ + + EM E + E Sbjct: 126 AKGEYGAMEAWKLGMGEPVPVSAAHGEGMGDLYARLTDAIEAAQDRIRAEM-EADGYGEG 184 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 +E+ PLR+AV GRPNVGKSTLIN L+G +RL+TG ++G+TRD+++ Sbjct: 185 DDEED-------------PPLRLAVAGRPNVGKSTLINALIGEDRLITGPEAGLTRDAIA 231 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + W W + + DTAG+RK ++ + LE+ + ++++++ E ++L+DA PFEKQD Sbjct: 232 VEWEWDGQRVRLHDTAGLRKRGKVDDRLERMSAADTLRAIKFAEIVLLLVDAERPFEKQD 291 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 L I D V G +V+ + KWD++ DK L +LR + + LPQI + IS +G G Sbjct: 292 LTIADRVVTEGRGLVVLITKWDLIEDKQAKLAELREEFERLLPQIKGAPLIPISSISGRG 351 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 L+ +M +V ++K W ++ T LN WL + ++PPP + R + +Y++Q ++ PP+F Sbjct: 352 LEKIMPAVSALHKNWDVKVKTRDLNDWLAEMVQRHPPPAVDGRRVKPRYLSQTKARPPTF 411 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIK 469 ++ + +P+SYKRYLIN LR F L G+PIR+ + KNPY K Sbjct: 412 VLMASRAAHLPDSYKRYLINGLREAFDLPGVPIRLIVKGQKNPYAK 457 >gi|114569754|ref|YP_756434.1| small GTP-binding protein [Maricaulis maris MCS10] gi|114340216|gb|ABI65496.1| small GTP-binding protein [Maricaulis maris MCS10] Length = 490 Score = 360 bits (924), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 168/464 (36%), Positives = 276/464 (59%), Gaps = 22/464 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTLFNRL K +A+V + PG+TRDR + + + ++DTAG D + Sbjct: 8 IAVVGRPNVGKSTLFNRLAGKPLAIVDDRPGVTRDRREARGRLGDLPLLLIDTAGYDDSE 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +M QTE+AI++A L L LID++AG+TP D +R+ P+++++NK + + Sbjct: 68 KDGLDAEMRTQTEMAIHDADLCLLLIDARAGVTPLDVVFADVIRRSGKPVLLLANKCEGK 127 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + + L E + SA H G +L+ + H L + R Sbjct: 128 AGESGLIDAFELGMGEPIAFSAAHGAGIGDLYDAVV---------HTLGPMAKAAR---- 174 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 + S + PLRIAV+GRPN GKSTLIN L+G RL+TG ++GITRD++S+ Sbjct: 175 ---------RGSKDDGDPPLRIAVIGRPNAGKSTLINTLIGEERLITGPEAGITRDAISV 225 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 W W + + DTAG+RK ++ + LE+ + ++++V+ E ++L+DA P EKQDL Sbjct: 226 DWVWDGRRVRLHDTAGLRKRGKVADRLERMSAADTLRAVKFAEVVLLLMDAEHPLEKQDL 285 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 + D + G AV +A++K D+V ++ L+++R + + LPQ+ + +S +GL Sbjct: 286 HLADMAYKEGRAVAIAVSKMDLVPNREAYLKEIRLEFERLLPQMTGAPVLPMSALKKKGL 345 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 D +M ++ ++++ W ++ T LN WL + ++PPP + R + +Y+TQ + PP+F+ Sbjct: 346 DAIMPTLAKLHENWDAKVKTRDLNDWLHEMTERHPPPAVNGRRIKPRYMTQTKGRPPTFV 405 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYI 468 + C+ + +PESYKRYL+N LR F L G+PIR+ ++ KNPY+ Sbjct: 406 LMCSRASDLPESYKRYLVNGLREAFDLPGVPIRLIVKAGKNPYV 449 Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 40/131 (30%), Positives = 66/131 (50%), Gaps = 2/131 (1%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP 264 RIAVVGRPNVGKSTL NRL G + + G+TRD + P+ + DTAG Sbjct: 7 RIAVVGRPNVGKSTLFNRLAGKPLAIVDDRPGVTRDRREARGRLGDLPLLLIDTAGYDDS 66 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 + + L+ + ++ ++ + ++L+DA D+ D + +G V+L NK Sbjct: 67 EK--DGLDAEMRTQTEMAIHDADLCLLLIDARAGVTPLDVVFADVIRRSGKPVLLLANKC 124 Query: 325 DMVSDKLNLLQ 335 + + + L+ Sbjct: 125 EGKAGESGLID 135 >gi|296532289|ref|ZP_06895028.1| ribosome-associated GTPase EngA [Roseomonas cervicalis ATCC 49957] gi|296267365|gb|EFH13251.1| ribosome-associated GTPase EngA [Roseomonas cervicalis ATCC 49957] Length = 445 Score = 360 bits (923), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 174/471 (36%), Positives = 278/471 (59%), Gaps = 27/471 (5%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ IAI+G PNVGKSTLFNRL +K+A+V + PG+TRDR +A + G ++DTAG+ Sbjct: 1 MLPRIAIIGRPNVGKSTLFNRLAGRKLAIVDDTPGVTRDRKETEARLGGRAVLLLDTAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + ++A +M +E AI +A L+LF++D++AGITP D A ++LR++++P+++V+NK Sbjct: 61 EEAPPDTVAGRMRASSEAAIRDADLVLFVVDARAGITPSDRAFAAWLRRQSVPVLLVANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + R YE Y L + V ISAEH G ++LH+ ++ ++ Sbjct: 121 TEGRGGGMAAYEAYELGLGDPVAISAEHGEGIADLHTTAAELLPEEE------------- 167 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 ++ S+PLR+A+VGRPN GKSTL+N LLG R++TG + G+TRD Sbjct: 168 -------------DEDARDRSRPLRLAIVGRPNAGKSTLLNALLGEERMITGPEPGLTRD 214 Query: 241 SVSISW-NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPF 299 +V++ W + + + DTAGMRK +RI E LEQ +V ++ +++ E I++LDA + Sbjct: 215 AVAVEWTDETGGKVRLVDTAGMRKKARIIEGLEQMSVAATIAALKEAEAAILVLDANLGM 274 Query: 300 EKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGR 359 ++QDLRI G AV++A NKWD V D+ + L +L Q+ + + T+S Sbjct: 275 DEQDLRIARLAEREGRAVIIAFNKWDAVEDRAACRRKLDDVLTASLAQLKGVEVVTLSAM 334 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 TG G++ LM +V + + W RI T LN W + ++ PP R +L+Y T ++ Sbjct: 335 TGRGVERLMPAVRQTVERWNRRIPTGELNRWFEAALARHAPPLANGRRIKLRYATMPKAR 394 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 PP+ IF +PE Y+RYL+N R F + G+P+R+ + KNP++++ Sbjct: 395 PPTIAIFGPRAEDLPEDYRRYLVNSFRDAFDMPGVPVRVNARGGKNPFVEE 445 >gi|302383643|ref|YP_003819466.1| ribosome-associated GTPase EngA [Brevundimonas subvibrioides ATCC 15264] gi|302194271|gb|ADL01843.1| ribosome-associated GTPase EngA [Brevundimonas subvibrioides ATCC 15264] Length = 537 Score = 359 bits (921), Expect = 7e-97, Method: Compositional matrix adjust. Identities = 180/472 (38%), Positives = 276/472 (58%), Gaps = 35/472 (7%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +AIVG PNVGKSTLFNRLV K++A+V + PG+TRDR Y + I + ++DTAG Sbjct: 1 MALKLAIVGRPNVGKSTLFNRLVGKRLALVDDRPGVTRDRRYAEGSIGDMDLTLIDTAGY 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 D + S+ +M +QTELA+ + LILF++D++ G+T D LRK++ P+I+++NK Sbjct: 61 EDVSDDSLESRMREQTELALEDGDLILFMMDAREGVTSLDRIFAERLRKQHKPVILLANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVI----FKIFKQKYPNHPLEMIE 176 ++R + E ++L F E V ISAEH G ++L++ I IF IE Sbjct: 121 AESRESGGGVGEAHALGFGEPVAISAEHGEGMADLYAAIRDASVDIF-----------IE 169 Query: 177 NNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSG 236 + KP+RIA++GRPN GKSTLIN L+G +RLLTG ++G Sbjct: 170 E-------------------IDEPDKPIRIAIIGRPNAGKSTLINHLIGEDRLLTGPEAG 210 Query: 237 ITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDAT 296 ITRDS+S+ W ++ I + DTAGMR+ +R+ E LE+ +V +++++ E ++++D Sbjct: 211 ITRDSISVDWEYEGQNIRLVDTAGMRRKARVQEKLEKLSVADTIRAITYAEVVVLVMDKD 270 Query: 297 IPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTI 356 F+ QDL++ D V G A+V KWD+ + L DL A LPQ+ + Sbjct: 271 NAFDVQDLQLADLVEREGRALVYVAAKWDLEENPQAKLADLTRMADDKLPQLRGSPFVAL 330 Query: 357 SGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQI 416 S +G G+D LM +VL+ + W ++ T LN WL ++PPP + + + KY+ Q Sbjct: 331 SAHSGRGVDRLMPAVLKAHATWSVKVKTKDLNDWLSMATQRHPPPAVDGKRIKTKYMAQT 390 Query: 417 QSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ-SSKNPY 467 ++ PP+F++F + +PE Y RYL N LR +F L G P+R+ + S+NPY Sbjct: 391 KARPPTFVLFASRAASLPEHYIRYLTNSLRESFDLPGTPLRLTIKGGSENPY 442 >gi|296116360|ref|ZP_06834975.1| GTP-binding protein EngA [Gluconacetobacter hansenii ATCC 23769] gi|295977060|gb|EFG83823.1| GTP-binding protein EngA [Gluconacetobacter hansenii ATCC 23769] Length = 470 Score = 358 bits (920), Expect = 8e-97, Method: Compositional matrix adjust. Identities = 180/463 (38%), Positives = 276/463 (59%), Gaps = 12/463 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + I G PNVGKST+FNRLV ++ A+V + PG+TRDR + + G ++DTAG+ + Sbjct: 16 VVIAGRPNVGKSTIFNRLVGRRQALVADTPGVTRDRKESETTVRGRRIRLIDTAGLEEAA 75 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 ++ +M +E A+ A L+LF +D++AGITP D ++LR++ P+++++NK + R Sbjct: 76 PDTLFGRMRASSESAVAMADLVLFCVDARAGITPADEHFAAWLRRQGRPVLVLANKAEGR 135 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 E +SL + ISAEH G ++L I + P PL +R E Sbjct: 136 QGAAAAMEAFSLGLGAPLGISAEHGEGLADLMGEI----ADRIPAGPLHPRRAPRRVE-- 189 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 SE + PLR+A+VGRPN GKSTL+NRLLG R++TG + G+TRDSVS+ Sbjct: 190 ------SEDEDGDVRPPGPLRLAIVGRPNAGKSTLLNRLLGEERMITGPEPGLTRDSVSV 243 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + PI++ DTAG+R+ +RI E+LE+ +V S+++++ E I+ LDAT+ +QDL Sbjct: 244 MLHDDEGPIQLVDTAGLRRKARIDETLEKMSVSASIEALKMAEVVILALDATLGVHEQDL 303 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 +I + G VLALNKWD V D+ Q +R + +L Q+ I + S TG G+ Sbjct: 304 QIARLIEREGRCCVLALNKWDAVEDRNVTRQAIRDRIEMSLSQMRGIPVVAFSALTGAGV 363 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 + L+ +V ++W R+ T LN W + ++PPP + R +L+YITQ +S PP+F+ Sbjct: 364 NKLLPTVRRAYEVWNRRVPTGELNRWFEMMVSRHPPPLVQGRRLKLRYITQAKSRPPTFI 423 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 +F T ++PE Y+RYL+N LR F L G PIR+ + S+NPY Sbjct: 424 LFGTRTEQMPEDYQRYLVNGLREAFDLPGTPIRLLLRGSQNPY 466 >gi|254418441|ref|ZP_05032165.1| GTPase, putative [Brevundimonas sp. BAL3] gi|196184618|gb|EDX79594.1| GTPase, putative [Brevundimonas sp. BAL3] Length = 539 Score = 358 bits (919), Expect = 9e-97, Method: Compositional matrix adjust. Identities = 180/468 (38%), Positives = 276/468 (58%), Gaps = 27/468 (5%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +AIVG PNVGKSTLFNRLV K++A+V + PG+TRDR Y I + ++DTAG Sbjct: 1 MALKVAIVGRPNVGKSTLFNRLVGKRLALVDDRPGVTRDRRYADGNIGDMDLTLIDTAGY 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 D + S+ +M +QTE A+ +A L++F++D++ G+T D LRK + PII+++NK Sbjct: 61 EDVTDDSLEARMREQTEAALEDAELVMFMMDAREGVTSLDRIFAERLRKVHKPIILLANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 ++R + E ++L F E V ISAEH G ++L+ I Sbjct: 121 SESRESGGGVGEAHALGFGEPVAISAEHGEGMADLYKAI--------------------- 159 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 + E+I E + KP+RIAV+GRPN GKSTLINRL+G +RLLTG ++GITRD Sbjct: 160 --RTASEDIFIE---EIDEPDKPIRIAVIGRPNAGKSTLINRLIGDDRLLTGPEAGITRD 214 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+S+ W ++ I + DTAGMR+ +R+ E LE+ +V +++++ E I+++D F+ Sbjct: 215 SISVDWTFEGKNIRLVDTAGMRRKARVQEKLEKLSVADTIRAITFAEVVILMMDKDDAFD 274 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 QDL++ D V G A+V +KWD+ + + L+ A LPQ+ +S + Sbjct: 275 TQDLQLADLVEREGRALVYVASKWDLEDEPQARMAKLKGMAEDKLPQLKGSPFVALSSHS 334 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G G++ LM +VL+ W ++ T LN+WL ++PPP + + + KYI Q ++ P Sbjct: 335 GRGVERLMPAVLQAYDTWSVKVKTKDLNTWLSMATQRHPPPAVDGKRIKPKYIAQTKARP 394 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK-NPY 467 P+F++ +PE YKRYL+N +R +F L G PIR+ +SS NPY Sbjct: 395 PTFVLMANRAESMPEHYKRYLVNSIRESFDLPGTPIRLNVKSSGVNPY 442 >gi|329850909|ref|ZP_08265754.1| ribosome-associated GTPase EngA [Asticcacaulis biprosthecum C19] gi|328841224|gb|EGF90795.1| ribosome-associated GTPase EngA [Asticcacaulis biprosthecum C19] Length = 556 Score = 357 bits (915), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 181/469 (38%), Positives = 283/469 (60%), Gaps = 21/469 (4%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M IAIVG PNVGKSTLFNRL KK+A+V + PG+TRDR Y + + ++DTAG Sbjct: 1 MPLKIAIVGRPNVGKSTLFNRLAGKKLAIVDDQPGVTRDRRYATGNLGDIPLLLIDTAGF 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 D + S+ +M QTELA++E + F++D++ G+TP D + LR+++ P+I+++NK Sbjct: 61 EDLTDDSLESRMRVQTELALDECDVAFFVVDAREGVTPLDRIFAATLRRRDKPVIMIANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + A E L F E + +SAEH G SEL+ +KY ++IE + Sbjct: 121 AEGHQAAATAEEARVLGFGEPLHLSAEHGEGISELYEAT-----EKY----RQLIEGD-- 169 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 I SE + +KP+RIA++GRPN GKSTLIN+LLG RLLTG ++GITRD Sbjct: 170 -------FIESE-GGDDDDDTKPIRIAIIGRPNAGKSTLINKLLGEERLLTGPEAGITRD 221 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+S+ W ++ I + DTAG+R+ +R+ E LE+ + +++++ E ++ +D FE Sbjct: 222 SISVDWLYEGRTIRLVDTAGLRRKARVQEKLEKLSTADTIRAITFAEIVVLCMDEANAFE 281 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 QDL+I D V G ++ A++KWD+V++ L ++ A + LPQ+ + T+SG T Sbjct: 282 VQDLQIADLVEREGRGLIYAISKWDLVAEPQARLAEIVETAERQLPQLRGTPLVTLSGVT 341 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G G++ LM +VL+ + W ++ T LN WL ++PPP + + + KY+ Q + P Sbjct: 342 GRGVERLMPAVLKCYRNWSAKVKTRDLNDWLALAVQRHPPPAVDGKRIKPKYMAQTKGRP 401 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ--SSKNPY 467 P+F++F +P+ Y+RYLIN LR +F L G+PIR+ + S+ NP+ Sbjct: 402 PTFVLFAARSYAMPDQYRRYLINSLRESFDLPGVPIRLTVKANSTVNPF 450 >gi|258542805|ref|YP_003188238.1| GTP-binding protein EngA [Acetobacter pasteurianus IFO 3283-01] gi|256633883|dbj|BAH99858.1| GTP-binding protein EngA [Acetobacter pasteurianus IFO 3283-01] gi|256636942|dbj|BAI02911.1| GTP-binding protein EngA [Acetobacter pasteurianus IFO 3283-03] gi|256639995|dbj|BAI05957.1| GTP-binding protein EngA [Acetobacter pasteurianus IFO 3283-07] gi|256643051|dbj|BAI09006.1| GTP-binding protein EngA [Acetobacter pasteurianus IFO 3283-22] gi|256646106|dbj|BAI12054.1| GTP-binding protein EngA [Acetobacter pasteurianus IFO 3283-26] gi|256649159|dbj|BAI15100.1| GTP-binding protein EngA [Acetobacter pasteurianus IFO 3283-32] gi|256652146|dbj|BAI18080.1| GTP-binding protein EngA [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655203|dbj|BAI21130.1| GTP-binding protein EngA [Acetobacter pasteurianus IFO 3283-12] Length = 472 Score = 357 bits (915), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 179/463 (38%), Positives = 286/463 (61%), Gaps = 8/463 (1%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + I G PNVGKSTLFNRLV ++ A+V + PG+TRDR G A+I G ++DTAG+ + Sbjct: 15 VVIAGRPNVGKSTLFNRLVGRRQALVADTPGVTRDRKEGVALIRGRYVRLIDTAGLEEAA 74 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 S+ +M +E A+ EA L+LF +D++AGITP D ++R++N P+++++NK + R Sbjct: 75 PESLFGRMRFSSESAVREADLVLFCVDARAGITPADEHFAQWIRRQNRPVLLIANKSEGR 134 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + E Y+L E + +SAEH G ++L +++I + E + ++ Sbjct: 135 LGAASAMEAYALGLGEPLALSAEHGEGVTDL---MWEIADRLPAEPEHEAEPEIEAADDF 191 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 E EG+ + I PLR+A+VGRPN GKSTL+N LLG R++TG ++G+TRDS+++ Sbjct: 192 AVE----EGEEPPRPIG-PLRVAIVGRPNAGKSTLMNALLGEERMITGPEAGLTRDSIAV 246 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + EI DTAG+RK +RI ESLE+ +V ++++++ E +++LDAT+ +QDL Sbjct: 247 TLKDGDDTFEIVDTAGLRKKARIDESLEKMSVSAAIEALKMAEVAVLVLDATLGVHEQDL 306 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 +I + G A VLALNKWD V D+ + + +L Q+ + + T S TG + Sbjct: 307 QIARLIEREGRACVLALNKWDAVQDRTATRNAILDRLSISLAQMRGVPVVTFSALTGASI 366 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 L+ +V + +W R+ T LN W ++ ++ PP + R +L+YITQ++S PP+F+ Sbjct: 367 HKLLPAVRDAWTVWNARVPTGALNRWFEEMLERHQPPLVQGRRLKLRYITQVKSRPPTFV 426 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 IF T ++P+ YKRYL+N LR F L G+PIR+ + +KNPY Sbjct: 427 IFGTRAEQLPDDYKRYLVNGLRETFDLPGVPIRLQTRGTKNPY 469 >gi|315499685|ref|YP_004088488.1| ribosome-associated gtpase enga [Asticcacaulis excentricus CB 48] gi|315417697|gb|ADU14337.1| ribosome-associated GTPase EngA [Asticcacaulis excentricus CB 48] Length = 550 Score = 354 bits (908), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 178/469 (37%), Positives = 275/469 (58%), Gaps = 21/469 (4%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M IAIVG PNVGKSTLFNRL KK+A+V + PG+TRDR Y I + +++DTAG Sbjct: 23 MTLKIAIVGRPNVGKSTLFNRLAGKKLAIVDDQPGVTRDRRYASGHIGDIDLDLIDTAGF 82 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 D + S+ +M QTE AI E + LF++D++ G+ P D LR K+ P+I+++NK Sbjct: 83 EDVADTSLEARMRQQTEKAIEECDVALFVMDAREGVVPLDRIFADILRFKDKPVILIANK 142 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + E + L F + +SAEH G SEL+ + +KY ++IE + Sbjct: 143 AEGHAGFAGAEEAHVLGFGAPLHLSAEHGEGISELYEAL-----EKY----RQLIEGD-- 191 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 ++ +KP+RIA++GRPN GKSTLINRLLG +RLLTG ++GITRD Sbjct: 192 --------FIADEDEDEDEDTKPVRIAIIGRPNAGKSTLINRLLGEDRLLTGPEAGITRD 243 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+S+ W ++ I + DTAG+R+ +R+ E LE+ + +++++ E I+++D FE Sbjct: 244 SISVDWEYEGRKIRLVDTAGLRRKARVQEKLEKLSTADTIRAITFAEVVILVMDQENAFE 303 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 QDL+I D V G A++ ++KWD V + L +L A + LPQ+ +S Sbjct: 304 TQDLQIADLVEREGRALIYVISKWDTVEEPQARLHELSEIAERMLPQLRGAPFVALSALN 363 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G GLD LM +VL+ + W ++ T LN WL+ ++PPP + + + KY+ Q + P Sbjct: 364 GRGLDRLMPAVLKAYRNWSAKVKTRDLNDWLKLAIQRHPPPAVDGKRIKPKYMAQTKGRP 423 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK--NPY 467 P+F++F + +P Y+RYLIN LR +F + G+PIR+ +++ NP+ Sbjct: 424 PTFVLFASRAYAMPAHYQRYLINSLRESFDMPGVPIRLSVKANAGVNPF 472 Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 37/109 (33%), Positives = 62/109 (56%), Gaps = 5/109 (4%) Query: 196 SVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEI 255 S N+ L+IA+VGRPNVGKSTL NRL G + Q G+TRD S + + +++ Sbjct: 17 SCNNLCMTLKIAIVGRPNVGKSTLFNRLAGKKLAIVDDQPGVTRDRRYASGHIGDIDLDL 76 Query: 256 FDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDA---TIPFEK 301 DTAG + SLE + +++ +++ C+ + ++DA +P ++ Sbjct: 77 IDTAGFEDVA--DTSLEARMRQQTEKAIEECDVALFVMDAREGVVPLDR 123 >gi|209545222|ref|YP_002277451.1| GTP-binding protein EngA [Gluconacetobacter diazotrophicus PAl 5] gi|209532899|gb|ACI52836.1| small GTP-binding protein [Gluconacetobacter diazotrophicus PAl 5] Length = 479 Score = 352 bits (903), Expect = 7e-95, Method: Compositional matrix adjust. Identities = 173/465 (37%), Positives = 281/465 (60%), Gaps = 4/465 (0%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + I G PNVGKSTLFNRLV ++ A+V + PG+TRDR + ++ G +VDTAG+ + Sbjct: 16 VVIAGRPNVGKSTLFNRLVGRRQALVADTPGVTRDRKEAETVMRGRRVRLVDTAGLEEAA 75 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 ++ +M +E A+ +A L+LF ID++AGITP D ++LR++ P+++++NK + R Sbjct: 76 ADTLYGRMRASSESAVAQADLVLFCIDTRAGITPADEHFAAWLRRQGRPVLLIANKAEGR 135 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 E ++L + ISAEH G S+L + +I + P P+ + Sbjct: 136 QGAAAAMEAFALGLGTPLAISAEHGEGLSDL---MGEIADRLPPQAPVPVAGGMADAAFE 192 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 + E + + + PLR+A+VGRPN GKSTL+NRLLG R++TG + G+TRDSV++ Sbjct: 193 DDDAEAGEAEEDDRPVG-PLRLAIVGRPNAGKSTLLNRLLGEERMITGPEPGLTRDSVTV 251 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + ++ PI++ DTAG+R+ +RI ESLE+ +V ++++++ E ++ LDAT+ +QDL Sbjct: 252 LLHDEHGPIQLVDTAGLRRRARIEESLEKMSVSATIEALKMAEVVVLTLDATLGVHEQDL 311 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 +I + G VLALNKWD V D++ Q + + +L Q+ I + + S TG G+ Sbjct: 312 QIARLIEREGRCCVLALNKWDAVEDRIATRQAISDRIETSLAQMRGIPVVSFSALTGAGV 371 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 + L+ V + W R+ T LN W + ++ PP + R +L+Y+TQ ++ PP+F+ Sbjct: 372 NKLLPVVRRAHATWNKRVPTGALNRWFEAMLERHSPPLVSGRRLKLRYMTQAKARPPTFI 431 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIK 469 +F T ++PE Y+RYL+N LR F L G PIR+ + +KNPY + Sbjct: 432 LFGTRAEQLPEDYQRYLVNGLRETFDLPGTPIRLLLRGTKNPYAE 476 >gi|162149029|ref|YP_001603490.1| GTP-binding protein EngA [Gluconacetobacter diazotrophicus PAl 5] gi|161787606|emb|CAP57202.1| GTP-binding protein [Gluconacetobacter diazotrophicus PAl 5] Length = 479 Score = 349 bits (896), Expect = 5e-94, Method: Compositional matrix adjust. Identities = 173/465 (37%), Positives = 278/465 (59%), Gaps = 4/465 (0%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + I G PNVGKSTLFNRLV ++ A+V + PG+TRDR + ++ G +VDTAG+ + Sbjct: 16 VVIAGRPNVGKSTLFNRLVGRRQALVADTPGVTRDRKEAETVMRGRRVRLVDTAGLEEAA 75 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 ++ +M +E A+ +A L+LF ID++AGITP D ++LR++ P+++++NK + R Sbjct: 76 ADTLYGRMRASSESAVAQADLVLFCIDTRAGITPADEHFAAWLRRQGRPVLLIANKAEGR 135 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 E ++L + ISAEH G S+L + +I + P P + Sbjct: 136 QGAAAAMEAFALGLGTPLAISAEHGEGLSDL---MGEIADRLPPQAPALVAGGMADAAFE 192 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 + E + + PLR+A+VGRPN GKSTL+NRLLG R++TG + G+TRDSV++ Sbjct: 193 DDDAEAGEADEDDRPVG-PLRLAIVGRPNAGKSTLLNRLLGEERMITGPEPGLTRDSVTV 251 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + ++ PI++ DTAG+R+ RI ESLE+ +V ++++++ E ++ LDAT+ +QDL Sbjct: 252 LLHDEHGPIQLVDTAGLRRRGRIEESLEKMSVSATIEALKMAEVVVLTLDATLGVHEQDL 311 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 +I + G VLALNKWD V D++ Q + + +L Q+ I + + S TG G+ Sbjct: 312 QIARLIEREGRCCVLALNKWDAVEDRIATRQAISDRIETSLAQMRGIPVVSFSALTGAGV 371 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 + L+ V + W R+ T LN W + ++ PP + R +L+Y+TQ ++ PP+F+ Sbjct: 372 NKLLPVVRRAHATWNKRVPTGALNRWFEAMLERHSPPLVSGRRLKLRYMTQAKARPPTFI 431 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIK 469 +F T ++PE Y+RYL+N LR F L G PIR+ + +KNPY + Sbjct: 432 LFGTRAEQLPEDYQRYLVNGLRETFDLPGTPIRLLLRGTKNPYAE 476 >gi|148259762|ref|YP_001233889.1| GTP-binding protein EngA [Acidiphilium cryptum JF-5] gi|146401443|gb|ABQ29970.1| tRNA modification GTPase trmE [Acidiphilium cryptum JF-5] Length = 451 Score = 345 bits (885), Expect = 9e-93, Method: Compositional matrix adjust. Identities = 170/464 (36%), Positives = 269/464 (57%), Gaps = 27/464 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI G PNVGKSTLFNRL K++A+V + PG+TRDR + GV ++DTAG+ + Sbjct: 11 VAICGRPNVGKSTLFNRLAGKRIALVADEPGVTRDRKEAWGELAGVKVQLIDTAGLEEAP 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 ++ +M T A++EA L+LF+ D++AG+ P D ++LR+ P+I+V+NK + R Sbjct: 71 PDTLPGRMRASTGTAVDEADLVLFVFDARAGLLPEDRHFAAWLRRAGKPVIVVANKAEGR 130 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 E Y L E V +SAEH+ G S+L I + + Sbjct: 131 GGSNAALEAYELGLGEPVAVSAEHNEGVSDLIDRIIEALPE------------------- 171 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 T E + ++ +P+ +A+VGRPN GKSTL+NRLLG R++TG + G+TRD+++ Sbjct: 172 -----TDEAED--EDGERPMHLAIVGRPNAGKSTLMNRLLGEQRVITGPEPGLTRDAIAA 224 Query: 245 SW-NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + +FDTAG+R+ +R+ LE+ + ++++++ +T ++ +DA QD Sbjct: 225 ELTDSAGRRYRLFDTAGLRRRARVEAGLEKLSTSSTIEALKFADTVVLAIDAHEGLHDQD 284 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 I + G A V+AL KWD+V D+ + + + +L Q+ I + +SG TGEG Sbjct: 285 FTIARLIEREGRACVIALTKWDLVEDRDRTRRAILERLEHSLSQMKGITLVPLSGETGEG 344 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 + L+ +V E +++W TR+TTS LN W + + PPP + R +L+YITQ+++ PPSF Sbjct: 345 VKKLLPAVREADRIWNTRVTTSALNRWFEGALERFPPPLVEGRRLKLRYITQVKARPPSF 404 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 +F T P+SY+RYL+N LR F L G PIR+ + +KNPY Sbjct: 405 AVFGTRAELTPDSYQRYLVNSLRERFGLEGTPIRLALRGTKNPY 448 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 55/119 (46%), Gaps = 2/119 (1%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP 264 R+A+ GRPNVGKSTL NRL G L + G+TRD +++ DTAG+ + Sbjct: 10 RVAICGRPNVGKSTLFNRLAGKRIALVADEPGVTRDRKEAWGELAGVKVQLIDTAGLEEA 69 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 ++L + + +V + + + DA +D + G V++ NK Sbjct: 70 P--PDTLPGRMRASTGTAVDEADLVLFVFDARAGLLPEDRHFAAWLRRAGKPVIVVANK 126 >gi|294086068|ref|YP_003552828.1| Small GTP-binding protein domain-containing protein [Candidatus Puniceispirillum marinum IMCC1322] gi|292665643|gb|ADE40744.1| Small GTP-binding protein domain protein [Candidatus Puniceispirillum marinum IMCC1322] Length = 478 Score = 345 bits (884), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 173/477 (36%), Positives = 275/477 (57%), Gaps = 11/477 (2%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + T AIVG PNVGKSTLFNRL+ ++ A+V + PG+TRDR G + G+ F I+DTAG+ Sbjct: 1 MVTFAIVGRPNVGKSTLFNRLIGRQHAIVDDQPGVTRDRREGDGRLAGLRFRIIDTAGLE 60 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 + + S+ +M QTELAI A + L ++D++ GITP D +RK +I+V NK Sbjct: 61 EASDGSLEDRMRYQTELAIVGADVTLLVVDARVGITPVDKFFAGEIRKSGAHVILVCNKC 120 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQK-----------YPNH 170 + +I E ++L E V ISA H G +LH + + ++ H Sbjct: 121 EGKIGASGVAESWTLGLGEPVAISAAHGEGLVDLHDAMLEAADKQGLAGVLTGDDILTTH 180 Query: 171 PLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLL 230 + + E + + +P+RIA+VGRPN+GKSTLIN LL +RLL Sbjct: 181 EDDDDLPDNDAEAPLDADGNPVDVWQDEAGKQPMRIAIVGRPNMGKSTLINSLLDEDRLL 240 Query: 231 TGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTI 290 G ++GITRD++ + + W+ P ++ DTAGMR+ +R+ + +E+ V ++++++ + Sbjct: 241 VGPEAGITRDAIELPFEWQGRPYKLVDTAGMRRRARVVDKVEKLMVDDALRAIQYAHLCV 300 Query: 291 VLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGD 350 +L+DAT KQDL I + N G A+V+ NKWD V +K + + ++ Q+ Sbjct: 301 LLIDATEELHKQDLSIARLIANEGRAIVIGANKWDAVRNKQESAMQISDRLKTSMSQLKG 360 Query: 351 IYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRL 410 + + +SG +GL +L+ + ++ +W TR++T LN WL+ +PPP + R R+ Sbjct: 361 VPVVQMSGLHKKGLGNLLKAADDMYAVWNTRVSTGRLNRWLEIMLEAHPPPLVEGRRLRI 420 Query: 411 KYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 +YITQI++ PP+F +F + P +P+SY RYL LR +F L GIPIRM + +NP+ Sbjct: 421 RYITQIKTRPPTFALFVSRPADLPDSYLRYLSTGLRNDFGLRGIPIRMVMRKRENPF 477 >gi|326403270|ref|YP_004283351.1| GTP-binding protein EngA [Acidiphilium multivorum AIU301] gi|325050131|dbj|BAJ80469.1| GTP-binding protein EngA [Acidiphilium multivorum AIU301] Length = 451 Score = 345 bits (884), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 169/464 (36%), Positives = 270/464 (58%), Gaps = 27/464 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI G PNVGKSTLFNRL K++A+V + PG+TRDR + GV ++DTAG+ + Sbjct: 11 VAICGRPNVGKSTLFNRLAGKRIALVADEPGVTRDRKEAWGELAGVKVQLIDTAGLEEAP 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 ++ +M T A++EA L+LF+ D++AG+ P D ++LR+ P+I+V+NK + R Sbjct: 71 PDTLPGRMRASTGTAVDEADLVLFVFDARAGLLPEDRHFAAWLRRAGKPVIVVANKAEGR 130 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 E Y L E V +SAEH+ G S+L I + + + +E+ Sbjct: 131 GGSNAALEAYELGLGEPVAVSAEHNEGVSDLIDRIIEALPET------DEVED------- 177 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 ++ +P+ +A+VGRPN GKSTL+NRLLG R++TG + G+TRD+++ Sbjct: 178 -------------EDGERPMHLAIVGRPNAGKSTLMNRLLGEQRVITGPEPGLTRDAIAA 224 Query: 245 SW-NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + +FDTAG+R+ +R+ LE+ + ++++++ +T ++ +DA QD Sbjct: 225 ELTDSAGRRYRLFDTAGLRRRARVEAGLEKLSTSSTIEALKFADTVVLAIDAHEGLHDQD 284 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 I + G A V+AL KWD+V D+ + + + +L Q+ I + +SG TGEG Sbjct: 285 FTIARLIEREGRACVIALTKWDLVEDRDRTRRAILERMEHSLSQMKGITLVPLSGETGEG 344 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 + L+ +V E +++W TR+TTS LN W + + PPP + R +L+YITQ+++ PPSF Sbjct: 345 VKKLLPAVREADRIWNTRVTTSALNRWFEGALERFPPPLVEGRRLKLRYITQVKARPPSF 404 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 +F T P+SY+RYL+N LR F L G PIR+ + +KNPY Sbjct: 405 AVFGTRAELTPDSYQRYLVNSLRERFGLEGTPIRLALRGTKNPY 448 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 55/119 (46%), Gaps = 2/119 (1%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP 264 R+A+ GRPNVGKSTL NRL G L + G+TRD +++ DTAG+ + Sbjct: 10 RVAICGRPNVGKSTLFNRLAGKRIALVADEPGVTRDRKEAWGELAGVKVQLIDTAGLEEA 69 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 ++L + + +V + + + DA +D + G V++ NK Sbjct: 70 P--PDTLPGRMRASTGTAVDEADLVLFVFDARAGLLPEDRHFAAWLRRAGKPVIVVANK 126 >gi|157828884|ref|YP_001495126.1| GTP-binding protein EngA [Rickettsia rickettsii str. 'Sheila Smith'] gi|166225852|sp|A8GT93|DER_RICRS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|157801365|gb|ABV76618.1| GTP-binding protein EngA [Rickettsia rickettsii str. 'Sheila Smith'] Length = 447 Score = 332 bits (850), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 189/467 (40%), Positives = 275/467 (58%), Gaps = 28/467 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 I +VG PNVGKSTLFNRL +K A+V + PG+TRDR Y I F ++DT G+ + Sbjct: 6 ITLVGRPNVGKSTLFNRLSIRKKAIVHDLPGVTRDRKYTDGKIGSFEFLLIDTPGLDEHP 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N S+ K++ +QT AI EA LI F++D+++GI P D ++SF+RK N P I+V NK + Sbjct: 66 N-SMGKRLIEQTTKAILEADLICFMVDARSGILPDDKLLSSFVRKYNKPAILVVNKCEKA 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 Y Y L F ++ ISAEH G +L+ I K P EES Sbjct: 125 FDFDKEY--YKLGFDSMIAISAEHGTGLIDLYDEII----AKLPE------------EES 166 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 + NI K L+I V GRPN GKST IN L+ RLLTG ++GITR+S+ I Sbjct: 167 IETNIADPIKGDC------LQIVVSGRPNAGKSTFINALINDERLLTGPEAGITRESIEI 220 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 W +KN+ I++ DTAG+RK S ITESLE+ + ++ S++ T I+++DA P ++QDL Sbjct: 221 DWQYKNNHIKLIDTAGLRKKSTITESLEKLSASDTINSIKLANTVILMIDALAPLKQQDL 280 Query: 305 RIVDSVFNTGHAVVLALNKWDMV--SDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 I V N G ++V+ +NKWD+V S+K ++ + +LPQ+ I + IS + Sbjct: 281 NIASHVVNEGRSIVIVVNKWDLVKESEKEAFQEEFYYQINTHLPQVKGIPVLFISAINKQ 340 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQ-KTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 ++ ++ + L+I K+W +ITTS LN WL T+ P R R+KY+TQ ++ PP Sbjct: 341 NIEQVLDACLKIYKIWNKKITTSKLNEWLNFTTEAHLLPLQKGGRRVRVKYMTQTKTRPP 400 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYI 468 +F +F P KI +SY RYL+N +R F + G+PIR + +KNPY+ Sbjct: 401 TFKLFSNNPEKITDSYTRYLVNNMREAFDMPGVPIRFTYVKTKNPYV 447 >gi|157826088|ref|YP_001493808.1| GTP-binding protein EngA [Rickettsia akari str. Hartford] gi|166225849|sp|A8GPH5|DER_RICAH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|157800046|gb|ABV75300.1| GTP-binding protein EngA [Rickettsia akari str. Hartford] Length = 447 Score = 331 bits (848), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 191/467 (40%), Positives = 272/467 (58%), Gaps = 28/467 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTLFNRL +K A+V + PGITRDR Y I F ++DT G+ + Sbjct: 6 IALVGRPNVGKSTLFNRLSIRKKAIVHDLPGITRDRKYTDGKIGSFEFLLIDTPGLEENH 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + S+ ++ +QT AI EA LI F++D ++GI P D + SF+RK N P I+V NK + Sbjct: 66 D-SMGARLMEQTTKAILEADLICFMVDGRSGILPNDKLLGSFVRKYNKPAILVVNKCEKA 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 Y Y L F +V ISAEH G +L+ I K P EES Sbjct: 125 FDFDKEY--YKLGFDSMVTISAEHGTGLIDLYDEII----TKLPE------------EES 166 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 + NI K L+I V GRPN GKST IN L+ RLLTG ++GITR+S+ I Sbjct: 167 IETNIADPIKGDY------LQIVVSGRPNAGKSTFINALINDERLLTGPEAGITRESIEI 220 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 W++KN+ I++ DTAG+RK S ITESLE+ + ++ S++ T I+++DA P ++QDL Sbjct: 221 DWHYKNNHIKLIDTAGLRKKSTITESLEKLSASDAINSIKFANTVILMIDALAPLKQQDL 280 Query: 305 RIVDSVFNTGHAVVLALNKWDMV--SDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 I V N G +V+ +NKWD+V S K ++ + +LPQ+ + + IS + Sbjct: 281 NIASHVVNEGRGIVIVVNKWDLVKESKKEAFQEEFYYQINTHLPQVKGVPVLFISAINKQ 340 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNP-PPTIFNRYNRLKYITQIQSSPP 421 ++ ++ S L+I K+W +I TS LN WL T +P P R R+KY+TQ ++ PP Sbjct: 341 NIEQVLDSCLKIYKIWNKKIATSKLNEWLNFTTEAHPLPLQKGGRRVRVKYMTQTKTRPP 400 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYI 468 +F +F P KI +SY RYL+N +R F + GIPIR + +KNPY+ Sbjct: 401 TFKLFSNNPEKITDSYTRYLVNNMRDAFDMPGIPIRFTYVKTKNPYV 447 >gi|239947026|ref|ZP_04698779.1| ribosome-associated GTPase EngA [Rickettsia endosymbiont of Ixodes scapularis] gi|239921302|gb|EER21326.1| ribosome-associated GTPase EngA [Rickettsia endosymbiont of Ixodes scapularis] Length = 447 Score = 331 bits (848), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 187/467 (40%), Positives = 274/467 (58%), Gaps = 28/467 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 I +VG PNVGKSTLFNRL +K A+V + PG+TRDR Y + I F ++DT G+ + Sbjct: 6 ITLVGRPNVGKSTLFNRLSTRKKAIVHDLPGVTRDRKYTEGKIGSFEFLLIDTPGLEENP 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + S+ +++ +QT AI EA LI F++D ++GI P D + SF+RK N P I+V NK + Sbjct: 66 D-SMGEKLMEQTTKAILEADLICFMVDGRSGILPDDKLLGSFVRKYNKPAILVVNKCEKA 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 Y Y L F +V ISAEH G L+ I K P EES Sbjct: 125 FDFDKEY--YKLGFDSMVAISAEHGTGLINLYDEII----AKLPE------------EES 166 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 + NI K L+I V GRPN GKST IN L+ RLLTG ++GITR+S+ I Sbjct: 167 IETNIADPIKGDC------LQIVVSGRPNAGKSTFINALINDERLLTGPEAGITRESIEI 220 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 W +KN+ I++ DTAG+RK S ITESLE+ + ++ S++ T I+++DA +P ++QDL Sbjct: 221 DWQYKNNHIKLIDTAGLRKKSTITESLEKLSASDTINSIKFANTVILMIDALVPLKQQDL 280 Query: 305 RIVDSVFNTGHAVVLALNKWDMV--SDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 I V N G ++V+ +NKWD+V S+K ++ + +LPQ+ + + IS + Sbjct: 281 NIASHVVNEGRSIVIVVNKWDLVKESEKEAFQEEFYYQINTHLPQVKGVPVLFISAINKQ 340 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNP-PPTIFNRYNRLKYITQIQSSPP 421 ++ ++ + L+I K+W +ITTS LN WL T +P P + R+KY+ Q ++ PP Sbjct: 341 NIEQVLDACLKIYKIWNKKITTSKLNEWLNFTTEAHPLPLQKGGKRVRVKYMAQTKTRPP 400 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYI 468 +F +F P KI +SY RYL+N +R F + GIPIR + +KNPY+ Sbjct: 401 TFKLFSNNPGKITDSYTRYLVNNMREAFDMPGIPIRFTYVKTKNPYV 447 >gi|34581350|ref|ZP_00142830.1| conserved GTP-binding protein [Rickettsia sibirica 246] gi|28262735|gb|EAA26239.1| conserved GTP-binding protein [Rickettsia sibirica 246] Length = 447 Score = 330 bits (847), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 189/467 (40%), Positives = 274/467 (58%), Gaps = 28/467 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 I +VG PNVGKSTLFNRL +K A+V + PG+TRDR Y I F ++DT G+ + Sbjct: 6 ITLVGRPNVGKSTLFNRLSIRKKAIVHDLPGVTRDRKYTDGKIGSFEFLLIDTPGLDEHP 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N S+ +++ +QT AI EA LI F++D ++GI P D ++SF+RK N P I+V NK + Sbjct: 66 N-SMGERLIEQTTKAILEADLICFMVDGRSGILPDDKLLSSFVRKYNKPAILVVNKCEKA 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 Y Y L F ++ ISAEH G +L+ I K P EES Sbjct: 125 FDFDKEY--YKLGFDSMIAISAEHGTGLIDLYDEII----AKLPE------------EES 166 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 K NI K L+I V GRPN GKST IN L+ RLLTG ++GITR+S+ I Sbjct: 167 IKTNIADPIKGDC------LQIVVSGRPNAGKSTFINALINDERLLTGPEAGITRESIEI 220 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 W +KN+ I++ DTAG+RK S ITESLE+ + ++ S++ T I+++DA P ++QDL Sbjct: 221 DWQYKNNHIKLIDTAGLRKKSTITESLEKLSASDTINSIKFANTVILMIDALAPLKQQDL 280 Query: 305 RIVDSVFNTGHAVVLALNKWDMV--SDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 I V N G ++V+ +NKWD+V S+K ++ + +LPQ+ I + IS + Sbjct: 281 NIASYVVNEGRSIVIVVNKWDLVKESEKEAFQEEFYYQINTHLPQVKGIPVLFISAINKQ 340 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQ-KTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 ++ ++ + L+I K+W +ITTS LN WL T+ P R R+KY+TQ ++ PP Sbjct: 341 NIEQVLDACLKIYKIWNKKITTSKLNEWLNFTTEAHLLPLQKGGRRVRVKYMTQTKTRPP 400 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYI 468 +F +F P KI +SY RYL+N +R F + G+PIR + +KNPY+ Sbjct: 401 TFKLFSNNPEKITDSYTRYLVNNMREAFDMPGVPIRFIYVKTKNPYV 447 >gi|157964826|ref|YP_001499650.1| GTP-binding protein EngA [Rickettsia massiliae MTU5] gi|157844602|gb|ABV85103.1| GTP-binding protein [Rickettsia massiliae MTU5] Length = 483 Score = 330 bits (847), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 188/467 (40%), Positives = 274/467 (58%), Gaps = 28/467 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 I +VG PNVGKSTLFNRL +K A+V + PG+TRDR Y I F ++DT G+ + Sbjct: 42 ITLVGRPNVGKSTLFNRLSIRKKAIVHDLPGVTRDRKYTDGKIGSFEFLLIDTPGLDENP 101 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N S+ +++ +QT AI EA LI F++D ++GI P D ++SF+RK N P I+V NK + Sbjct: 102 N-SMGERLMEQTTKAILEADLICFMVDGRSGILPDDKLLSSFVRKYNKPAILVVNKCEKA 160 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 E Y L F ++ ISAEH G +L+ I K P EE+ Sbjct: 161 FDFDK--EYYKLGFDSMIAISAEHGTGLIDLYDEII----AKLPE------------EEA 202 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 + NI K L+I V GRPN GKST IN L+ RLLTG ++GITR+S+ I Sbjct: 203 IETNIADPIKGDC------LQIVVSGRPNAGKSTFINALINDERLLTGPEAGITRESIEI 256 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 W +KN+ I++ DTAG+RK S ITESLE+ + ++ S++ T I+++DA P ++QDL Sbjct: 257 DWQYKNNHIKLIDTAGLRKKSTITESLEKLSASDTINSIKFANTVILMIDALAPLKQQDL 316 Query: 305 RIVDSVFNTGHAVVLALNKWDMV--SDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 I V N G ++V+ +NKWD+V S+K ++ + +LPQ+ I + IS + Sbjct: 317 NIASHVVNEGRSIVIVVNKWDLVKESEKEAFQEEFYYQINTHLPQVKGIPVLFISAINKQ 376 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNP-PPTIFNRYNRLKYITQIQSSPP 421 + ++ + L+I K+W +ITTS LN WL T +P P R R+KY+TQ ++ PP Sbjct: 377 NIAQVLDACLKIYKIWNKKITTSKLNEWLNFTTEAHPLPLQKGGRRVRVKYMTQTKTRPP 436 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYI 468 +F +F P KI +SY RYL+N +R F + G+PIR + +KNPY+ Sbjct: 437 TFKLFSNNPAKITDSYTRYLVNNMREAFDMPGVPIRFIYVKTKNPYV 483 >gi|165933610|ref|YP_001650399.1| GTP-binding protein Der [Rickettsia rickettsii str. Iowa] gi|189037156|sp|B0BUT3|DER_RICRO RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|165908697|gb|ABY72993.1| GTP-binding protein [Rickettsia rickettsii str. Iowa] Length = 447 Score = 330 bits (846), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 188/467 (40%), Positives = 275/467 (58%), Gaps = 28/467 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 I +VG PNVGKSTLFNRL +K A+V + PG+TRDR Y I F ++DT G+ + Sbjct: 6 ITLVGRPNVGKSTLFNRLSIRKKAIVHDLPGVTRDRKYTDGKIGSFEFLLIDTPGLDEHP 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N S+ +++ +QT AI EA LI F++D+++GI P D ++SF+RK N P I+V NK + Sbjct: 66 N-SMGERLIEQTTKAILEADLICFMVDARSGILPDDKLLSSFVRKYNKPAILVVNKCEKA 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 Y Y L F ++ ISAEH G +L+ I K P EES Sbjct: 125 FDFDKEY--YKLGFDSMIAISAEHGTGLIDLYDEII----AKLPE------------EES 166 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 + NI K L+I V GRPN GKST IN L+ RLLTG ++GITR+S+ I Sbjct: 167 IETNIADPIKGDC------LQIVVSGRPNAGKSTFINALINDERLLTGPEAGITRESIEI 220 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 W +KN+ I++ DTAG+RK S ITESLE+ + ++ S++ T I+++DA P ++QDL Sbjct: 221 DWQYKNNHIKLIDTAGLRKKSTITESLEKLSASDTINSIKLANTVILMIDALAPLKQQDL 280 Query: 305 RIVDSVFNTGHAVVLALNKWDMV--SDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 I V N G ++V+ +NKWD+V S+K ++ + +LPQ+ I + IS + Sbjct: 281 NIASHVVNEGRSIVIVVNKWDLVKESEKEAFQEEFYYQINTHLPQVKGIPVLFISAINKQ 340 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQ-KTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 ++ ++ + L+I K+W +ITTS LN WL T+ P R R+KY+TQ ++ PP Sbjct: 341 NIEQVLDACLKIYKIWNKKITTSKLNEWLNFTTEAHLLPLQKGGRRVRVKYMTQTKTRPP 400 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYI 468 +F +F P KI +SY RYL+N +R F + G+PIR + +KNPY+ Sbjct: 401 TFKLFSNNPEKITDSYTRYLVNNMREAFDMPGVPIRFTYVKTKNPYV 447 >gi|238650994|ref|YP_002916850.1| GTP-binding protein EngA [Rickettsia peacockii str. Rustic] gi|259645885|sp|C4K2K1|DER_RICPU RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|238625092|gb|ACR47798.1| GTP-binding protein EngA [Rickettsia peacockii str. Rustic] Length = 447 Score = 330 bits (845), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 189/467 (40%), Positives = 274/467 (58%), Gaps = 28/467 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 I +VG PNVGKSTLFNRL +K A+V + PG+TRDR Y I F ++DT G+ + Sbjct: 6 ITLVGRPNVGKSTLFNRLSIRKKAIVHDLPGVTRDRKYTDGKIGSFEFLLIDTPGLDENP 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N S+ +++ +QT AI EA LI F++D ++GI P D ++SF+RK N P I+V NK + Sbjct: 66 N-SMGERLIEQTTKAILEADLICFMVDGRSGILPDDKLLSSFVRKYNKPAILVVNKCEKA 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 Y Y L F ++ ISAEH G +L+ I K P EES Sbjct: 125 FDFDKEY--YKLGFDSMIAISAEHGTGLIDLYDEII----AKLPE------------EES 166 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 + NI K L+I V GRPN GKST IN L+ RLLTG ++GITR+S+ I Sbjct: 167 IETNIADPIKGDC------LQIVVSGRPNAGKSTFINALINDERLLTGPEAGITRESIEI 220 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 W +KN+ I++ DTAG+RK S ITESLE+ + ++ S++ T I+++DA P ++QDL Sbjct: 221 DWQYKNNHIKLIDTAGLRKKSTITESLEKLSASDTINSIKFANTVILMIDALAPLKQQDL 280 Query: 305 RIVDSVFNTGHAVVLALNKWDMV--SDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 I V N G ++V+ +NKWD+V S+K ++ + +LPQ+ I + IS + Sbjct: 281 NIASHVVNEGRSIVIVVNKWDLVKESEKEAFQEEFYYQINTHLPQVKGIPVLFISAINKQ 340 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQ-KTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 ++ ++ + L+I K+W +ITTS LN WL T+ P R R+KY+TQ ++ PP Sbjct: 341 NIEQVLDACLKIYKIWNKKITTSKLNEWLNFTTKAHLLPLQKGGRRVRVKYMTQTKTRPP 400 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYI 468 +F +F P KI +SY RYL+N +R F + GIPIR + +KNPY+ Sbjct: 401 TFKLFSNNPEKITDSYTRYLVNNMREAFDMPGIPIRFIYVKTKNPYV 447 >gi|67458640|ref|YP_246264.1| GTP-binding protein EngA [Rickettsia felis URRWXCal2] gi|75536894|sp|Q4UMV9|DER_RICFE RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|67004173|gb|AAY61099.1| Conserved GTP-binding protein [Rickettsia felis URRWXCal2] Length = 447 Score = 330 bits (845), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 187/467 (40%), Positives = 275/467 (58%), Gaps = 28/467 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 I +VG PNVGKSTLFNRL +K A+V + PG+TRDR Y + I F ++DT G+ + Sbjct: 6 ITLVGRPNVGKSTLFNRLSIRKKAIVHDLPGVTRDRKYTEGKIGSFEFLLIDTPGLEENP 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + S+ +++ +QT AI EA LI F++D ++GI P D + SF+RK N P I++ NK + Sbjct: 66 D-SMGERLIEQTTKAILEADLICFMVDGRSGILPDDKLLGSFVRKYNKPAILIVNKCEKA 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 Y Y L F +V ISAEH G +L+ I K P EES Sbjct: 125 FDFDKEY--YKLGFDSMVAISAEHGTGLIDLYDEII----AKLPE------------EES 166 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 + NI K L+I V GRPN GKST IN L+ RLLTG ++GITR+S+ I Sbjct: 167 IETNIADPIKRDC------LQIVVSGRPNAGKSTFINALINDERLLTGPEAGITRESIEI 220 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 W +KN+ I++ DTAG+RK S ITESLE+ + ++ S++ T I+++DA P ++QDL Sbjct: 221 DWQYKNNHIKLIDTAGLRKKSTITESLEKLSASDAINSIKFANTVILMIDALAPLKQQDL 280 Query: 305 RIVDSVFNTGHAVVLALNKWDMV--SDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 I V N G ++V+ +NKWD+V S+K ++ + +LPQ+ + + IS + Sbjct: 281 NIASHVVNEGRSIVIVVNKWDLVKESEKEAFQEEFYYQINTHLPQVKGVPVLFISAINKQ 340 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNP-PPTIFNRYNRLKYITQIQSSPP 421 ++ ++ + L+I K+W +ITTS LN WL T +P P + R+KY+TQ ++ PP Sbjct: 341 NIEQVLDACLKIYKIWNKKITTSKLNEWLNFTTEAHPLPLQKGGKRVRVKYMTQTKTRPP 400 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYI 468 +F +F P KI +SY RYL+N +R F + GIPIR + +KNPY+ Sbjct: 401 TFKLFSNNPEKITDSYTRYLVNNMREAFDMPGIPIRFTYVKTKNPYV 447 >gi|15892953|ref|NP_360667.1| GTP-binding protein EngA [Rickettsia conorii str. Malish 7] gi|24636839|sp|Q92GU2|DER_RICCN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|15620147|gb|AAL03568.1| conserved GTP-binding protein [Rickettsia conorii str. Malish 7] Length = 447 Score = 330 bits (845), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 188/467 (40%), Positives = 274/467 (58%), Gaps = 28/467 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 I +VG PNVGKSTLFNRL +K A+V + PG+TRDR Y I F ++DT G+ + Sbjct: 6 ITLVGRPNVGKSTLFNRLSIRKKAIVHDLPGVTRDRKYTDGKIGSFEFLLIDTPGLDENP 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N S+ +++ +QT AI EA LI F++D ++GI P D ++SF+RK N P I+V NK + Sbjct: 66 N-SMGERLIEQTTKAILEADLICFMVDGRSGILPDDKLLSSFVRKYNKPAILVVNKCEKA 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 Y Y L F ++ ISAEH G +L+ I K P EES Sbjct: 125 FDFDKEY--YKLGFDSMIAISAEHGTGLIDLYDEII----AKLPE------------EES 166 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 K NI K L+I V GRPN GKST IN L+ RLLTG ++GITR+S+ I Sbjct: 167 IKTNIADPIKGDC------LQIVVSGRPNAGKSTFINALINDERLLTGPEAGITRESIEI 220 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 W +KN+ I++ DTAG+RK S ITESLE+ + ++ S++ T I+++DA P ++QDL Sbjct: 221 DWQYKNNHIKLIDTAGLRKKSTITESLEKLSASDTINSIKFANTVILMIDALAPLKQQDL 280 Query: 305 RIVDSVFNTGHAVVLALNKWDMV--SDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 I V + G ++V+ +NKWD+V S+K ++ + +LPQ+ I + IS + Sbjct: 281 NIASHVVHEGRSIVIVVNKWDLVKESEKEAFQEEFYYQINTHLPQVKGIPVLFISAINKQ 340 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQ-KTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 ++ ++ + L+I K+W +ITTS LN WL T+ P R R+KY+TQ ++ PP Sbjct: 341 NIEQVLDACLKIYKIWNKKITTSKLNEWLNFTTEAHLLPLQKGGRRVRVKYMTQTKTRPP 400 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYI 468 +F +F P KI +SY RYL+N +R F + G+PIR + +KNPY+ Sbjct: 401 TFKLFSNNPEKITDSYTRYLVNNMREAFDMPGVPIRFIYVKTKNPYV 447 >gi|157804058|ref|YP_001492607.1| GTP-binding protein EngA [Rickettsia canadensis str. McKiel] gi|166225851|sp|A8EZN9|DER_RICCK RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|157785321|gb|ABV73822.1| GTP-binding protein EngA [Rickettsia canadensis str. McKiel] Length = 447 Score = 329 bits (843), Expect = 7e-88, Method: Compositional matrix adjust. Identities = 190/472 (40%), Positives = 275/472 (58%), Gaps = 38/472 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTLFNRL +K A+V N PG+TRDR Y I F ++DT G+ + Sbjct: 6 IALVGRPNVGKSTLFNRLSIRKKAIVHNLPGVTRDRKYTDGKIGSCEFLLIDTPGLEENP 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N S++ ++ +QT AI EA LI F++D ++GI P D ++SF+RK N P I+V NK + Sbjct: 66 N-SMSVRLMEQTTKAILEADLICFMVDCRSGILPDDKLLSSFIRKYNKPAILVVNKCEKA 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 Y Y L F +V ISAEH G +L+ I + Sbjct: 125 FDFDKEY--YQLGFDSMVAISAEHGTGLIDLYDEIIA---------------------KL 161 Query: 185 PKENITSEGKSSVKNISKPLR-----IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITR 239 PKE KS NI+ P++ I + GRPN GKST IN L+ RLLTG ++GITR Sbjct: 162 PKE------KSIETNIADPVKGDCVQIVISGRPNAGKSTFINALINDERLLTGPEAGITR 215 Query: 240 DSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPF 299 +S+ I W +KN+ I++ DTAG+RK S ITESL++ + ++ S++ T I+++DA P Sbjct: 216 ESIEIDWQYKNNHIKLIDTAGLRKKSTITESLDKLSASDAINSIKFANTVILIIDALSPL 275 Query: 300 EKQDLRIVDSVFNTGHAVVLALNKWDMV--SDKLNLLQDLRTKAIKNLPQIGDIYINTIS 357 ++QDL I V N G ++V+ +NKWD+V S+K ++ + +LPQI + + IS Sbjct: 276 KQQDLNIASYVANEGRSIVIVVNKWDLVKESEKEAFQEEFYYQINTHLPQIKGVSVLFIS 335 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNP-PPTIFNRYNRLKYITQI 416 + ++ ++ + L I K W +ITTS LN WL T +P P + R+KY+TQI Sbjct: 336 AINKQNIEQVLDACLTIYKNWNKKITTSKLNEWLNFTTEAHPLPLQKGGKRVRIKYMTQI 395 Query: 417 QSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYI 468 ++ PP+F +F P KI SY RYL+N +R F + GIPIR + +KNPY+ Sbjct: 396 KTRPPTFKLFSNNPEKITNSYTRYLVNNMREAFDMPGIPIRFAYVKTKNPYV 447 >gi|229587033|ref|YP_002845534.1| GTP-binding protein EngA [Rickettsia africae ESF-5] gi|259645884|sp|C3PPD1|DER_RICAE RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|228022083|gb|ACP53791.1| GTP-binding protein [Rickettsia africae ESF-5] Length = 447 Score = 329 bits (843), Expect = 7e-88, Method: Compositional matrix adjust. Identities = 188/467 (40%), Positives = 274/467 (58%), Gaps = 28/467 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 I +VG PNVGKSTLFNRL +K A+V + PG+TRDR Y I F ++DT G+ + Sbjct: 6 ITLVGRPNVGKSTLFNRLSIRKKAIVHDLPGVTRDRKYTDGKIGSFEFLLIDTPGLDEHP 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N S+ +++ +QT AI EA LI F++D ++GI P D ++SF+RK N P I+V NK + Sbjct: 66 N-SMGERLIEQTTKAILEADLICFMVDGRSGILPDDKLLSSFVRKYNKPAILVVNKCEKA 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 Y Y L F ++ ISAEH G +L+ I K P EES Sbjct: 125 FDFDKEY--YKLGFDSMIAISAEHGTGLIDLYDEII----AKLPE------------EES 166 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 K NI K L+I V GRPN GKST IN L+ RLLTG ++GITR+S+ I Sbjct: 167 IKTNIADPIKGDC------LQIVVSGRPNAGKSTFINALINDERLLTGPEAGITRESIEI 220 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 W +KN+ I++ DTAG+RK S IT+SLE+ + ++ S++ T I+++DA P ++QDL Sbjct: 221 DWQYKNNHIKLIDTAGLRKKSTITKSLEKLSASDTINSIKFANTVILMIDALAPLKQQDL 280 Query: 305 RIVDSVFNTGHAVVLALNKWDMV--SDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 I V N G ++V+ +NKWD+V S+K ++ + +LPQ+ I + IS + Sbjct: 281 NIASHVVNEGRSIVIVVNKWDLVKESEKEAFQEEFYYQINTHLPQVKGIPVLFISAINKQ 340 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQ-KTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 ++ ++ + L+I K+W +ITTS LN WL T+ P R R+KY+TQ ++ PP Sbjct: 341 NIEQVLDACLKIYKIWNKKITTSKLNEWLNFTTEAHLLPLQKGGRRVRVKYMTQTKTRPP 400 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYI 468 +F +F P KI +SY RYL+N +R F + G+PIR + +KNPY+ Sbjct: 401 TFKLFSNNPEKITDSYTRYLVNNMREAFDMPGVPIRFIYVKTKNPYV 447 >gi|91205027|ref|YP_537382.1| GTP-binding protein EngA [Rickettsia bellii RML369-C] gi|122426010|sp|Q1RK21|DER_RICBR RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|91068571|gb|ABE04293.1| GTP-binding protein [Rickettsia bellii RML369-C] Length = 452 Score = 327 bits (837), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 183/465 (39%), Positives = 271/465 (58%), Gaps = 28/465 (6%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 +VG PNVGKSTLFNRL +K A+V + PG+TRDR Y I F+++DT G+ + + Sbjct: 13 LVGRPNVGKSTLFNRLSMRKKAIVHDLPGVTRDRKYTDGRIGSFEFSLIDTPGLEENPD- 71 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 S K++ +QT AINEA LI F++DS++GI P D ++ F+RK N P ++V NK + Sbjct: 72 SFGKRLMEQTTKAINEADLICFMVDSRSGILPDDKLLSDFVRKYNKPAVLVINKCEKAFD 131 Query: 127 QRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEESPK 186 Y Y L F +V ISAEH G +L+ I K P E+S + Sbjct: 132 FDKEY--YKLGFDSMVAISAEHGTGMIDLYDEII----AKLPE------------EDSAE 173 Query: 187 ENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISW 246 I K L+I V GRPN GKST IN L+ RLLTG ++GITR+S+ I W Sbjct: 174 AEIHDPIKGDC------LQIVVSGRPNAGKSTFINALINDERLLTGPEAGITRESIEIDW 227 Query: 247 NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRI 306 +K + I++ DTAG+RK + ITESLE+ + ++ S++ T I+++DA P ++QDL I Sbjct: 228 QYKGNHIKLIDTAGLRKKATITESLEKLSASDAINSIKFANTVILMIDALSPLKQQDLNI 287 Query: 307 VDSVFNTGHAVVLALNKWDMV--SDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 V N G ++V+ +NKWD++ S+K ++ + LPQ+ + IS + + + Sbjct: 288 ASHVANEGRSIVIVVNKWDLIKESEKEAFKEEFYYQINTTLPQVKGVPALFISAKNKQNI 347 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNP-PPTIFNRYNRLKYITQIQSSPPSF 423 D++ S ++I K W +ITTS LN WL T +P P + R+KY+TQ ++ PP+F Sbjct: 348 ADVLDSCIKIYKTWNKKITTSKLNEWLNFTTEAHPLPLQKGGKRVRVKYMTQTKTRPPTF 407 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYI 468 +F P KI +SY RYL+N +R F + G+PIR + +KNPY+ Sbjct: 408 KLFSNNPEKITDSYTRYLVNNMREAFDMPGVPIRFNYIKTKNPYV 452 >gi|157827640|ref|YP_001496704.1| GTP-binding protein EngA [Rickettsia bellii OSU 85-389] gi|166225850|sp|A8GXR7|DER_RICB8 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|157802944|gb|ABV79667.1| GTP-binding protein EngA [Rickettsia bellii OSU 85-389] Length = 452 Score = 326 bits (835), Expect = 5e-87, Method: Compositional matrix adjust. Identities = 183/465 (39%), Positives = 270/465 (58%), Gaps = 28/465 (6%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 +VG PNVGKSTLFNRL +K A+V + PG+TRDR Y I F+++DT G + + Sbjct: 13 LVGRPNVGKSTLFNRLSMRKKAIVHDLPGVTRDRKYTDGRIGSFEFSLIDTPGFEENPD- 71 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 S K++ +QT AINEA LI F++DS++GI P D ++ F+RK N P ++V NK + Sbjct: 72 SFGKRLMEQTTKAINEADLICFMVDSRSGILPDDKLLSDFVRKYNKPAVLVINKCEKAFD 131 Query: 127 QRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEESPK 186 Y Y L F +V ISAEH G +L+ I K P E+S + Sbjct: 132 FDKEY--YKLGFDSMVAISAEHGTGMIDLYDEII----AKLPE------------EDSAE 173 Query: 187 ENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISW 246 I K L+I V GRPN GKST IN L+ RLLTG ++GITR+S+ I W Sbjct: 174 AEIHDPIKGDC------LQIVVSGRPNAGKSTFINALINDERLLTGPEAGITRESIEIDW 227 Query: 247 NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRI 306 +K + I++ DTAG+RK + ITESLE+ + ++ S++ T I+++DA P ++QDL I Sbjct: 228 QYKGNHIKLIDTAGLRKKATITESLEKLSASDAINSIKFANTVILMIDALSPLKQQDLNI 287 Query: 307 VDSVFNTGHAVVLALNKWDMV--SDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 V N G ++V+ +NKWD++ S+K ++ + LPQ+ + IS + + + Sbjct: 288 ASHVANEGRSIVIVVNKWDLIKESEKEAFKEEFYYQINTTLPQVKGVPALFISAKNKQNI 347 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNP-PPTIFNRYNRLKYITQIQSSPPSF 423 D++ S ++I K W +ITTS LN WL T +P P + R+KY+TQ ++ PP+F Sbjct: 348 ADVLDSCIKIYKTWNKKITTSKLNEWLNFTTEAHPLPLQKGGKRVRVKYMTQTKTRPPTF 407 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYI 468 +F P KI +SY RYL+N +R F + G+PIR + +KNPY+ Sbjct: 408 KLFSNNPEKITDSYTRYLVNNMREAFDMPGVPIRFNYIKTKNPYV 452 >gi|218508068|ref|ZP_03505946.1| GTP-binding protein EngA [Rhizobium etli Brasil 5] Length = 322 Score = 324 bits (830), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 143/280 (51%), Positives = 205/280 (73%) Query: 191 SEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKN 250 E + + + +KPLR+A+VGRPN GKSTLINR LG +RLLTG ++GITRDS+S+ W+W+ Sbjct: 39 GEDEEPIYDDTKPLRVAIVGRPNAGKSTLINRFLGEDRLLTGPEAGITRDSISVEWDWRG 98 Query: 251 HPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSV 310 I++FDTAGMR+ +R+TE LE+ +V +++++R ET +++ DATIPFEKQDL+IVD V Sbjct: 99 RTIKMFDTAGMRRKARVTEKLEKLSVADALRAIRFAETVVIVFDATIPFEKQDLQIVDLV 158 Query: 311 FNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVS 370 G A VLA NKWDM+ D+ +L DLR K + LPQ I IS +TG GLD LM S Sbjct: 159 LREGRAAVLAFNKWDMIEDRQAVLADLREKTDRLLPQARGIRAVPISCQTGWGLDKLMQS 218 Query: 371 VLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFLIFCTFP 430 +++ +++W RI+T+ LN WL+ Q+Q+PPP + R +LKY+TQ+++ PP+F+I CT Sbjct: 219 IIDTDRVWNKRISTARLNRWLETQQIQHPPPAVSGRRIKLKYMTQVKARPPAFMISCTRS 278 Query: 431 NKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 + +PESY RYLIN LR +F + +PIR+ F+S++NPY K Sbjct: 279 DALPESYTRYLINGLRADFDMPSVPIRIHFRSAENPYESK 318 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 55/125 (44%), Gaps = 12/125 (9%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG- 63 +AIVG PN GKSTL NR + + + G GITRD + + G + DTAG+ Sbjct: 54 VAIVGRPNAGKSTLINRFLGEDRLLTGPEAGITRDSISVEWDWRGRTIKMFDTAGMRRKA 113 Query: 64 ------KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIV 117 + S+A + AI A ++ + D+ D I + ++ ++ Sbjct: 114 RVTEKLEKLSVADALR-----AIRFAETVVIVFDATIPFEKQDLQIVDLVLREGRAAVLA 168 Query: 118 SNKMD 122 NK D Sbjct: 169 FNKWD 173 >gi|15604520|ref|NP_221038.1| GTP-binding protein EngA [Rickettsia prowazekii str. Madrid E] gi|8928120|sp|Q9ZCP6|DER_RICPR RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|3861214|emb|CAA15114.1| unknown [Rickettsia prowazekii] gi|292572309|gb|ADE30224.1| GTP-binding protein [Rickettsia prowazekii Rp22] Length = 447 Score = 314 bits (804), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 178/467 (38%), Positives = 269/467 (57%), Gaps = 28/467 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 I +VG PNVGKSTLFNRL +K A+V + PG+TRDR Y I F ++DT G+ + Sbjct: 6 ITLVGRPNVGKSTLFNRLSIRKKAIVHDLPGVTRDRKYTDGKIGSFEFLLIDTPGLEENP 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + ++ +++ QT AI EA LI F++D K+G+ P D +++F+RK N I+V NK + Sbjct: 66 D-NMGERLMGQTTQAILEADLICFMVDGKSGVLPDDKLLSNFVRKYNKHCILVVNKCEKA 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 Y Y L F IV ISAEH +G +L+ I EES Sbjct: 125 FDFDKEY--YKLGFDSIVIISAEHGIGLIDLYDAIISKLSV----------------EES 166 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 + NI + L+I V GRPN GKST IN ++ RLLTG ++GITR+S+ + Sbjct: 167 IERNIADPFRGDC------LQIVVSGRPNAGKSTFINAIINDERLLTGPEAGITRESIEV 220 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 W +KN I++ DTAG+RK S IT SLE+ + ++ S++ T I+++DA ++QD Sbjct: 221 DWQYKNTHIKLIDTAGLRKKSTITASLEKLSTSDTINSIKFANTVILMIDALAHVKQQDF 280 Query: 305 RIVDSVFNTGHAVVLALNKWDMV--SDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 I + N G ++++ +NKWD+V S+K ++ + +LPQI + + IS + Sbjct: 281 NIASHIVNEGRSIIIVVNKWDLVKESEKEAFQKEFYYQINTHLPQIKGVPVLFISAINKQ 340 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNP-PPTIFNRYNRLKYITQIQSSPP 421 ++ ++ + L+I K+W +ITT+ LN WL T +P P R R+KY+TQI++ PP Sbjct: 341 NIEQVLDACLKIYKIWNKKITTNKLNKWLDFTTKIHPLPLQKCGRRVRIKYMTQIKTRPP 400 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYI 468 +F +F P KI +SY RYL+N +R F + GIPIR + +KNPY+ Sbjct: 401 TFKLFSNNPGKITDSYTRYLVNNMRDAFDMHGIPIRFTYVKNKNPYV 447 >gi|42520904|ref|NP_966819.1| GTP-binding protein EngA [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410645|gb|AAS14753.1| GTP-binding protein [Wolbachia endosymbiont of Drosophila melanogaster] Length = 441 Score = 312 bits (800), Expect = 6e-83, Method: Compositional matrix adjust. Identities = 175/471 (37%), Positives = 272/471 (57%), Gaps = 39/471 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PN GKSTLFNRLV +K AVV N PG+TRDR G I+ + F ++DT G D Sbjct: 4 IAIVGLPNAGKSTLFNRLVGRKAAVVSNIPGVTRDRREGMGRISDLEFKVIDTGGWNDQT 63 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N S+ Q+ +Q E +++ +++I FL+D+K + RK N P+I+V+NK ++ Sbjct: 64 NFSL--QVIEQIEFSLSNSNIIFFLVDAKVQNERNEEFAKWLKRKINKPVILVANKCESH 121 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 ++ Y + DF V ISAEH+LG +L+ + + IEN N E Sbjct: 122 KSENVDY-LQFFDFLGPVYISAEHNLGMVDLYDALAGV------------IENFNENTEL 168 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P ++ LRIA++GRPNVGKST +N LL NRL+T S+ G TRDSV I Sbjct: 169 PNNELSR------------LRIAIIGRPNVGKSTFLNGLLAENRLITSSEPGTTRDSVDI 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 +++ I + DTAG+R+ + + + LE + V+KSM+S++ +++LD+ + E+QDL Sbjct: 217 TYDHDGELITLIDTAGIRRKANVVDGLESRFVEKSMESIKRSHVVVLMLDSLVGIEQQDL 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQ--IGDIYIN----TISG 358 I ++ G +++ LNKWD++ +D R++ IK + Q + +++ TIS Sbjct: 277 SIGEAAIKGGKGIIVVLNKWDLIG------KDDRSRLIKFVKQQEVTRLFLEVPTITISA 330 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 G D++ LE+++ +I+T+ LN WL ++ P + + ++KYI QI + Sbjct: 331 LKGMRCGDVIDKCLEVSESLNKKISTAKLNKWLIDAVGKHSHPLVKGKAVKMKYIAQIGT 390 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIK 469 PP+F + C P + ESYKRYLIN LR NF G+P+R+ + +KNPY+K Sbjct: 391 KPPAFSLICNIPESVDESYKRYLINDLRKNFFADGVPVRLLLKKNKNPYVK 441 Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 32/57 (56%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAG 260 L+IA+VG PN GKSTL NRL+G + + G+TRD + ++ DT G Sbjct: 2 LKIAIVGLPNAGKSTLFNRLVGRKAAVVSNIPGVTRDRREGMGRISDLEFKVIDTGG 58 >gi|225631062|ref|ZP_03787800.1| GTP-binding protein [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225591242|gb|EEH12386.1| GTP-binding protein [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 441 Score = 311 bits (798), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 175/471 (37%), Positives = 272/471 (57%), Gaps = 39/471 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PN GKSTLFNRLV +K AVV N PG+TRDR G I+ + F ++DT G D Sbjct: 4 IAIVGLPNAGKSTLFNRLVGRKAAVVSNIPGVTRDRREGMGRISDLEFKVIDTGGWNDQT 63 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N S+ Q+ +Q E +++ +++I FL+D+K + RK N P+I+V+NK ++ Sbjct: 64 NFSL--QVIEQIEFSLSNSNIIFFLVDAKVQNERNEEFAKWLKRKINKPVILVANKCESH 121 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 ++ Y + DF V ISAEH+LG +L+ + + IEN N E Sbjct: 122 KSENVDY-LQFFDFLGPVYISAEHNLGMVDLYDALAGV------------IENFNENTEL 168 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P ++ LRIA++GRPNVGKST +N LL NRL+T S+ G TRDSV I Sbjct: 169 PNNELSR------------LRIAIIGRPNVGKSTFLNGLLAENRLITSSEPGTTRDSVDI 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 +++ I + DTAG+R+ + + + LE + V+KSM+S++ +++LD+ + E+QDL Sbjct: 217 TYDHDGELITLIDTAGIRRKANVVDGLESRFVEKSMESIKRSHVVVLMLDSLVGIEQQDL 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQ--IGDIYIN----TISG 358 I ++ G +++ LNKWD++ +D R++ IK + Q + +++ TIS Sbjct: 277 SIGEAAIKGGKGIIVVLNKWDLIG------KDDRSRLIKFVKQQEVTRLFLEVPTITISA 330 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 G D++ LE+++ +I+T+ LN WL ++ P + + ++KYI QI + Sbjct: 331 LKGMRSGDVIDKCLEVSESLNKKISTAKLNKWLIDAVGKHSHPLVKGKAVKMKYIAQIGT 390 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIK 469 PP+F + C P + ESYKRYLIN LR NF G+P+R+ + +KNPY+K Sbjct: 391 KPPAFSLICNIPESVDESYKRYLINDLRKNFFADGVPVRLLLKKNKNPYVK 441 Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 32/57 (56%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAG 260 L+IA+VG PN GKSTL NRL+G + + G+TRD + ++ DT G Sbjct: 2 LKIAIVGLPNAGKSTLFNRLVGRKAAVVSNIPGVTRDRREGMGRISDLEFKVIDTGG 58 >gi|51473858|ref|YP_067615.1| GTP-binding protein EngA [Rickettsia typhi str. Wilmington] gi|81692277|sp|Q68W59|DER_RICTY RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|51460170|gb|AAU04133.1| probable GTP-binding protein EngA [Rickettsia typhi str. Wilmington] Length = 447 Score = 311 bits (797), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 177/467 (37%), Positives = 267/467 (57%), Gaps = 28/467 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 I +VG PNVGKSTLFNRL +K A+V + PG+TRDR Y I F ++DT G+ + Sbjct: 6 ITLVGRPNVGKSTLFNRLSIRKKAIVHDLPGVTRDRKYTDGKIGSFKFLLIDTPGLEENP 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + ++ K++ +QT AI EA LI ++D ++G+ P D ++SF+RK N I+V NK + Sbjct: 66 D-NMGKRLMEQTTQAILEADLICLMVDGRSGVLPDDKLLSSFVRKYNKHCILVVNKCEKA 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 Y Y L F IV ISAEH G +L+ I K ES Sbjct: 125 FDFDKEY--YKLGFDSIVIISAEHGTGLIDLYDEIIAKLSIK----------------ES 166 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 + NI + L+I V GRPN GKST IN ++ RLLTG ++GITR+S+ I Sbjct: 167 IERNIADPFRGDC------LQIVVSGRPNAGKSTFINAIINDERLLTGPEAGITRESIEI 220 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 W +KN I++ DTAG+RK S IT SLE+ + ++ +++ T I+++DA ++QDL Sbjct: 221 DWQYKNTHIKLIDTAGLRKKSTITASLEKLSTSDTINAIKFANTVILMIDALAHLKQQDL 280 Query: 305 RIVDSVFNTGHAVVLALNKWDMV--SDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 I + + N G ++++ +NKWD+V S+K + + +LPQI + + IS + Sbjct: 281 NIANHIINEGRSIIIVVNKWDLVEESEKEAFQAEFYYQINTHLPQIKGVPVLFISAINKQ 340 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQ-KTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 ++ ++ + L+I K+W +ITT LN WL T++ P R R+KY+TQ ++ PP Sbjct: 341 NIEQVLDACLKIYKIWNKKITTGKLNEWLNFTTKVHTLPLQKCGRRVRIKYMTQTKTRPP 400 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYI 468 +F +F P KI +SY RYL+N +R F + GIPIR + +KNPY+ Sbjct: 401 TFKLFSNNPEKITDSYTRYLVNNMRDTFDMHGIPIRFTYVKNKNPYV 447 >gi|225630952|ref|YP_002727743.1| GTP-binding protein [Wolbachia sp. wRi] gi|225592933|gb|ACN95952.1| GTP-binding protein [Wolbachia sp. wRi] Length = 441 Score = 310 bits (793), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 173/471 (36%), Positives = 270/471 (57%), Gaps = 39/471 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PN GKSTLFNRLV +K AVV N PG+TRDR G I+ + F ++DT G D Sbjct: 4 IAIVGLPNAGKSTLFNRLVGRKAAVVSNIPGVTRDRREGMGRISDLEFKVIDTGGWND-- 61 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 S + Q+ +Q E +++ +++I FL+D+K RK N P+I+++NK ++ Sbjct: 62 QTSFSLQVIEQIEFSLSSSNIIFFLVDAKVQNERNKEFAKWLKRKINKPVILIANKCESH 121 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 ++ Y + DF V ISAEH+LG +L+ + + IEN N E Sbjct: 122 KSENVDY-LQFFDFLGPVYISAEHNLGMVDLYDALAGV------------IENFNENTEL 168 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P ++ LRIA++GRPNVGKST +N LL NRL+T S+ G TRDSV I Sbjct: 169 PNNELSR------------LRIAIIGRPNVGKSTFLNGLLAENRLITSSEPGTTRDSVDI 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 +++ I + DTAG+R+ + + + LE + V+KSM+S++ +++LD+ + E+QDL Sbjct: 217 TYDHDGELITLIDTAGIRRKANVVDGLESRFVEKSMESIKRSHVVVLMLDSLVGIEQQDL 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQ--IGDIYIN----TISG 358 I ++ G +++ LNKWD++ +D R++ IK + Q + +++ TIS Sbjct: 277 SIGEAAIKGGKGIIVVLNKWDLIG------KDDRSRLIKFVKQQEVTRLFLEVPTITISA 330 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 G D++ LE+++ +I+T+ LN WL ++ P + + ++KYI QI + Sbjct: 331 LKGMRCGDVIDKCLEVSESLNKKISTAKLNKWLIDAVGKHSHPLVKGKAVKMKYIAQIGT 390 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIK 469 PP+F + C P + ESYKRYLIN LR NF G+P+R+ + +KNPY+K Sbjct: 391 KPPAFSLICNIPESVDESYKRYLINDLRKNFFADGVPVRLLLKKNKNPYVK 441 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 4/98 (4%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 L+IA+VG PN GKSTL NRL+G + + G+TRD + ++ DT G Sbjct: 2 LKIAIVGLPNAGKSTLFNRLVGRKAAVVSNIPGVTRDRREGMGRISDLEFKVIDTGGWND 61 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 + S + +++ S+ + L+DA + E+ Sbjct: 62 QT----SFSLQVIEQIEFSLSSSNIIFFLVDAKVQNER 95 >gi|58584843|ref|YP_198416.1| GTP-binding protein EngA [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58419159|gb|AAW71174.1| Predicted GTPase [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 470 Score = 308 bits (789), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 177/473 (37%), Positives = 275/473 (58%), Gaps = 14/473 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PN GKSTLFNR++ +K AVV N PGITRDR G I+ + I+DT G D Sbjct: 4 IAIVGLPNAGKSTLFNRILGRKAAVVSNIPGITRDRQEGVGRISDLELKIIDTGGWNDQT 63 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N + Q+ +Q E ++ A +I FL+D+K R+ N +I+++NK ++ Sbjct: 64 NFFL--QIVEQIEFSLFSADIIFFLVDAKVQNEQNKEFAKWLKRRTNKSVILIANKCESY 121 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKI------FKQKYPNHPLEMIENN 178 ++ N + DF V ISAEH+LG +L++ + + F P PL +I+ Sbjct: 122 KSE-NIDYLQFFDFIGPVYISAEHNLGMVDLYNALAGVIDSSTNFSSVIP-KPLPVIKVA 179 Query: 179 KRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 + E I++ + N LR+A++GRPNVGKST +N LL NRL+T S+ G T Sbjct: 180 GTGIQEKNEQISTLHAENQSNQPNRLRVAIIGRPNVGKSTFLNSLLSENRLITSSEPGTT 239 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RDSV I++N I + DTAG+R+ + + ++LE K VKKSM+S++ +++LD+ + Sbjct: 240 RDSVDITYNHNGKLITLIDTAGIRRRANLIDNLELKFVKKSMESIKRSHVVVLMLDSLLG 299 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVS--DKLNLLQDLRTKAIKNLPQIGDIYINTI 356 ++QDL I ++ G +++ LNKWD+++ D+ L++ +R + I L ++ TI Sbjct: 300 IKQQDLSIGEAAIKGGKGIIIVLNKWDLINKDDRSRLIKFVRQQEITRL--FLEVPTVTI 357 Query: 357 SGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQI 416 S G D++ LE+N+ +I+T+ +N WL ++P P + R R+KYI QI Sbjct: 358 SALKGIRCSDVIDKCLEVNEFLNKKISTAKVNKWLVDALGRHPHPFVKGRAIRMKYIAQI 417 Query: 417 QSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIK 469 + PP+F + C P + ESYKRYL N LR NF + GIP+R+ + +KNPY+K Sbjct: 418 GTKPPAFSLTCNVPEGVDESYKRYLTNDLRKNFFIDGIPVRLLLKKNKNPYVK 470 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 33/57 (57%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAG 260 L+IA+VG PN GKSTL NR+LG + + GITRD + ++I DT G Sbjct: 2 LKIAIVGLPNAGKSTLFNRILGRKAAVVSNIPGITRDRQEGVGRISDLELKIIDTGG 58 >gi|332288185|ref|YP_004419037.1| GTP-binding protein EngA [Gallibacterium anatis UMN179] gi|330431081|gb|AEC16140.1| GTP-binding protein EngA [Gallibacterium anatis UMN179] Length = 507 Score = 307 bits (786), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 173/486 (35%), Positives = 268/486 (55%), Gaps = 19/486 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M IA+VG PNVGKSTLFNRL + + A+V N PG+TRDR YGQ +NG F ++DT GI Sbjct: 1 MTPVIALVGRPNVGKSTLFNRLTRSRDALVANFPGLTRDRKYGQGQLNGTEFIVIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG I ++M +Q+ LAI+EA ++LFL+D++AG+T D I +LR++ ++V+NK Sbjct: 61 -DGSEQGIEEKMAEQSLLAIDEADIVLFLVDARAGLTAADIGIAQYLRRREKTTVVVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQK-------------- 166 +D A + E Y L EI I+A G ++L + +++ Sbjct: 120 IDGIDADSHIGEFYQLGLGEITPIAASQGRGVTQLIQDVLAPYQEDESEDAETENDEDFD 179 Query: 167 --YPNHPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLL 224 + E N+E ++ + S + KP++IA+VGRPNVGKSTL NR+L Sbjct: 180 FALSDTDFSDFEATSINDEIVDDSEDEDAVDSAETEQKPIKIAIVGRPNVGKSTLTNRIL 239 Query: 225 GYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVR 284 G +R++ G TRDS+ I I DTAG+RK ++T ++E+ +V K++Q+++ Sbjct: 240 GEDRVVVYDMPGTTRDSIYIPMERDGQQYTIIDTAGVRKRGKVTLTVEKFSVIKTLQAIQ 299 Query: 285 TCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKN 344 ++ +DA QDL ++ + N G A+V+ +NKWD +S ++ +++++ + Sbjct: 300 DANVVLLTIDAREGISDQDLSLLGFILNAGRALVIVVNKWDGLSQEIK--DNIKSELDRR 357 Query: 345 LPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIF 404 L I ++ IS G G+ +L SV E + R +TS L LQ ++ PP I Sbjct: 358 LDFIDFARVHFISALHGSGVGNLFESVNEAYQSATKRYSTSLLTRILQMATTEHQPPMIA 417 Query: 405 NRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 R +LKY +PP ++ +K+P+SYKRYL N R + + G PIRM FQ Sbjct: 418 GRRIKLKYAHPGGHNPPIIVVHGNQIDKLPDSYKRYLSNYYRRSLQIIGSPIRMLFQDGD 477 Query: 465 NPYIKK 470 NPY K Sbjct: 478 NPYAGK 483 >gi|189183414|ref|YP_001937199.1| GTP-binding protein EngA [Orientia tsutsugamushi str. Ikeda] gi|238692236|sp|B3CR58|DER_ORITI RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|189180185|dbj|BAG39965.1| GTP-binding protein, Era/Obg family [Orientia tsutsugamushi str. Ikeda] Length = 454 Score = 301 bits (770), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 178/471 (37%), Positives = 262/471 (55%), Gaps = 31/471 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQA-IINGVIFNIVDTAGIADG 63 +A+VG PNVGKSTLFNRL ++ ++V + PGITRDR Y +A + + +I +VDT G+ Sbjct: 6 VALVGKPNVGKSTLFNRLSLREKSIVHDLPGITRDRKYAKANLFSDLI--VVDTPGLEFA 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKN--IPIIIVSNKM 121 S+ M Q+ +AINEAH+I F++D+ GI P D + +RK N I+V NK Sbjct: 64 AAGSLEFNMMQQSLVAINEAHIICFVVDAITGILPIDEECANLIRKHNKQSSTILVINKT 123 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 + I Y Y L F E V ISA+H G EL +I I + Sbjct: 124 EKPIILDKSY--YKLGFSESVCISAKHGQGIYELGDIIQNIL-----------------S 164 Query: 182 EESPKENITSEGKSSVKNISKP-LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 E+ +T+ N +P L +A+VGRPN GKST IN +L +R+LTG QSG+TR+ Sbjct: 165 EDKKINFLTTTNTKCEYNQQRPELELAIVGRPNCGKSTFINAILNEDRVLTGPQSGLTRN 224 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 SV I W + H I + DTAG+RK + +T+S E +V + +++R +V++DAT E Sbjct: 225 SVEIDWEYYGHLIRLVDTAGVRKKNAVTQSCELLSVNDTFKTIRFANIVVVMIDATRGLE 284 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 +QDL I+ N G +VL +NKWD++ K ++L ++ QI I IS + Sbjct: 285 QQDLSIISYAVNEGRGIVLVVNKWDLIKKKKEFQKELSRLIAYSVFQIKGINPIYISAKE 344 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYN---RLKYITQIQ 417 L+ ++ + W+ R+TT LN WL K +P P F + ++KY TQ + Sbjct: 345 KFNLESVLQQCVLTYASWQKRVTTGTLNQWLAKAMSNSPLP--FQSHGKRVKIKYCTQTK 402 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSL-SGIPIRMCFQSSKNPY 467 + PP+ +FC I ESYKRYLIN ++NF + +G+P+R+ F KNPY Sbjct: 403 ARPPTIKLFCNNIESIDESYKRYLINNFKLNFDIAAGVPVRLSFVKGKNPY 453 >gi|325187572|emb|CCA22109.1| ras family GTPase putative [Albugo laibachii Nc14] gi|325188870|emb|CCA23399.1| ras family GTPase putative [Albugo laibachii Nc14] Length = 535 Score = 300 bits (769), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 166/481 (34%), Positives = 270/481 (56%), Gaps = 30/481 (6%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + +A+VG NVGKSTLFNRL K + A+V N PG TRDR + I G+ F ++DT G+ D Sbjct: 51 FRLALVGRTNVGKSTLFNRLTKSRRAIVHNVPGTTRDRRFAPGRIAGLEFEVIDTGGLED 110 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKN--IPIIIVSNK 120 + S+ + M QT++A++EA LI FLID + G+TP D +LRK+N PI V+NK Sbjct: 111 APSGSLEEGMLSQTKIAVHEADLIFFLIDGRQGVTPVDSYFARWLRKENASAPIHAVANK 170 Query: 121 MDTRIA--QRNFYEIYSLDFKEIVEISAEHDLGTSELHSVI---FKIFKQKYPNHPLEMI 175 ++ Q + E Y L E + ISAEH G S L + + +F+++ P Sbjct: 171 LEGYPDRWQDSLNECYQLGMGEAIPISAEHGEGVSLLLDALIPSYDLFEKRNPVIQQNNE 230 Query: 176 ENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQS 235 ++NK +E+S K ++ A+VGRPNVGKSTL+NR++ +R+LTG + Sbjct: 231 DDNKIDEDSHK-----------------IKFAIVGRPNVGKSTLLNRIIREDRVLTGPEP 273 Query: 236 GITRDSVSISWNWKNHPIEIFDTAGMRKPSRITES--LEQKTVKKSMQSVRTCETTIVLL 293 G+TRDS+ + W + H I++ DTAG+R+ S+ S +E +V+ S ++ + ++ Sbjct: 274 GVTRDSIEVPWTFGEHEIKLIDTAGIRRHSKRDHSNQIEDLSVRDSFDAIDKAQVVAIVT 333 Query: 294 D-ATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNL-LQDLRTKAIKNLPQIGDI 351 D + DL I V G ++++ NK DMV + ++ + +L Q+ + Sbjct: 334 DLSEKKLTHMDLTIAQRVIEQGRSLLIIANKCDMVKTSYEYEMSRVKQQLEDSLAQVRGV 393 Query: 352 YINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLK 411 + S TG G ++ ++ + + W RI+T+ LN W +PPP + +K Sbjct: 394 SVLPTSALTGHGTRKILPEIINVYEKWIKRISTARLNRWFNAISRHHPPPNTKGKRPNIK 453 Query: 412 YITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS--SKNPYIK 469 Y+TQ+ + PP+F++F P+ IPESY+R+ +++LR F + GIP R+ + S+NP+ K Sbjct: 454 YVTQVSTRPPTFVLFVNSPSLIPESYQRFFLSQLREEFGMDGIPARLLLRGNKSENPFQK 513 Query: 470 K 470 + Sbjct: 514 R 514 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 51/181 (28%), Positives = 79/181 (43%), Gaps = 7/181 (3%) Query: 201 SKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAG 260 S R+A+VGR NVGKSTL NRL R + + G TRD E+ DT G Sbjct: 48 SNQFRLALVGRTNVGKSTLFNRLTKSRRAIVHNVPGTTRDRRFAPGRIAGLEFEVIDTGG 107 Query: 261 MRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLA 320 + + SLE+ + ++ +V + L+D +Q + VDS F A Sbjct: 108 LEDAP--SGSLEEGMLSQTKIAVHEADLIFFLIDG-----RQGVTPVDSYFARWLRKENA 160 Query: 321 LNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKT 380 V++KL D ++ Q+G IS GEG+ L+ +++ L++ Sbjct: 161 SAPIHAVANKLEGYPDRWQDSLNECYQLGMGEAIPISAEHGEGVSLLLDALIPSYDLFEK 220 Query: 381 R 381 R Sbjct: 221 R 221 >gi|117926861|ref|YP_867478.1| small GTP-binding protein [Magnetococcus sp. MC-1] gi|117610617|gb|ABK46072.1| small GTP-binding protein [Magnetococcus sp. MC-1] Length = 495 Score = 300 bits (769), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 164/472 (34%), Positives = 262/472 (55%), Gaps = 17/472 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG F +VDT G Sbjct: 19 VALVGRPNVGKSTLFNRLTRTRDALVDDTPGLTRDRQYGIMKRGDTPFPMVDTGGFEADP 78 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 ++ + QT LAI EA +I+F++D G D+AI S LR P+II +NK + + Sbjct: 79 GETMVSLIRGQTILAIEEADIIVFVVDGSTGPLTDDYAIASHLRSSGKPVIIAANKSEKK 138 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQ-----KYPNHPLEMIENNK 179 A + E + L + I+ IS+ H LG +L + ++ + P L +E + Sbjct: 139 AATASI-EFHELGMEPIIPISSAHGLGIGDLLETLEEMTDAMEGFCRQPEEQLLPLEVEQ 197 Query: 180 RNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITR 239 N E +E PLR+AVVG PN GKS+L+NRL+G RLL +G TR Sbjct: 198 ENPEVARE----------PRFKGPLRLAVVGCPNAGKSSLVNRLVGEERLLASEIAGTTR 247 Query: 240 DSVSISWNWKN-HPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 DS+ + N + + DTAG+R+ SR++ +E+ V +++S+ E I++LDA Sbjct: 248 DSIDVPITDANGETVILVDTAGIRRKSRVSLRVEKFAVIAALKSMERAEVAILVLDAQRG 307 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 QD RI + G ++ A+NKWD + ++ + + P++ + +S Sbjct: 308 VTDQDKRIGSYALDAGCGLIFAVNKWDTMPPGQQTIRSFQEGLAIHFPRLTHCPVIFLSA 367 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 ++G+ ++ L+ + ++ + + R++TS LN WL++ + PP R +++Y +Q+ S Sbjct: 368 KSGKRVEKLLPTARKVRQATQMRVSTSNLNRWLEQAIEKKAPPRAAGRPVKIRYCSQVSS 427 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 SPP+F+ FC P K+ ESYKRYL N+LR F+L G PIR+ F+ +NP+ +K Sbjct: 428 SPPTFVFFCNRPEKMEESYKRYLENQLREAFALDGTPIRIMFKGGENPFAEK 479 Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 44/178 (24%), Positives = 80/178 (44%), Gaps = 12/178 (6%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 + +SK +A+VGRPNVGKSTL NRL L G+TRD + P + D Sbjct: 11 QTMSKLPLVALVGRPNVGKSTLFNRLTRTRDALVDDTPGLTRDRQYGIMKRGDTPFPMVD 70 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 T G + E++ +++ ++ + + ++D + D I + ++G V Sbjct: 71 TGGFE--ADPGETMVSLIRGQTILAIEEADIIVFVVDGSTGPLTDDYAIASHLRSSGKPV 128 Query: 318 VLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEIN 375 ++A NK + + ++ ++G I IS G G+ DL+ ++ E+ Sbjct: 129 IIAANKSEKKAATASI----------EFHELGMEPIIPISSAHGLGIGDLLETLEEMT 176 >gi|56461130|ref|YP_156411.1| GTP-binding protein EngA [Idiomarina loihiensis L2TR] gi|81821723|sp|Q5QYB3|DER_IDILO RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|56180140|gb|AAV82862.1| GTPase EngA [Idiomarina loihiensis L2TR] Length = 479 Score = 300 bits (769), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 167/470 (35%), Positives = 265/470 (56%), Gaps = 14/470 (2%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YGQA +G F ++DT GI Sbjct: 1 MLPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQANYDGYQFIVIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 G I ++M Q+ LA++EA ++LF++D++ G+T D AI LRK+N + +V NK Sbjct: 61 -HGDEEGIDEEMAKQSLLAVDEADVVLFMVDARDGVTVGDQAIADHLRKQNKKVYLVCNK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D A + YSL E+ I+A H G +L + FK ++YP+ ++ + Sbjct: 120 IDGIDAHSAMADFYSLSLGELYGIAAAHGRGVEQLLEICFKPIAEEYPD---VIVPKDVA 176 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 +EE + I + PL++A+VGRPNVGKSTLINR+LG R++ G TRD Sbjct: 177 SEELEHDEIDYD--------KLPLKLAIVGRPNVGKSTLINRILGEERVVVYDMPGTTRD 228 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 SV I + DTAG+R+ RI E++E+ +V K++Q++ ++++DA Sbjct: 229 SVYIPMQRNEREYVLIDTAGVRRRGRIGEAIEKFSVVKTLQAIEDANVVLIVVDARETIS 288 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 QDL ++ N G ++V+A+NKWD + + + ++++ + + L + ++ IS Sbjct: 289 DQDLNLIGFALNAGRSIVIAVNKWDGLQN--DHKEEIKRELDRRLGFVDFARLHFISALH 346 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G G+ L SV E RI+TS L ++ Q ++ PP + R +LKY +P Sbjct: 347 GTGVGHLFESVEEAYASATQRISTSKLTKIMEMAQEEHQPPLVSGRRVKLKYAHAGGYNP 406 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 P +I +P +Y+RYLIN R + + G PI++ F+ NPY K Sbjct: 407 PRIIIHGNQVKDLPGAYQRYLINYFRKSLGVMGTPIKVEFREPVNPYEGK 456 >gi|190571288|ref|YP_001975646.1| GTP-binding protein [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213018685|ref|ZP_03334493.1| GTP-binding protein [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190357560|emb|CAQ54999.1| GTP-binding protein [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995636|gb|EEB56276.1| GTP-binding protein [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 441 Score = 299 bits (765), Expect = 7e-79, Method: Compositional matrix adjust. Identities = 169/471 (35%), Positives = 268/471 (56%), Gaps = 39/471 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 I I+G PN GKSTLFNRLV +K AVV + PG+TRDR G I+ + F ++DT G D Sbjct: 4 IVIIGLPNAGKSTLFNRLVGRKAAVVSDIPGVTRDRREGIGRISDLEFKVIDTGGWND-- 61 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 S + Q+ +Q E +++ A ++ FL+D+K RK N P+I+++NK ++ Sbjct: 62 QTSFSLQVIEQIEFSLSSADVVFFLVDAKVQNEQNKEFAKWLKRKTNKPVILIANKCESH 121 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 ++ Y + +F V ISAEH+LG +L+ + + + Sbjct: 122 KSENVDY-LQFFNFIGPVYISAEHNLGMVDLYDALAGVIEG------------------- 161 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 SEG ++ S LRIA++GRPNVGKST +N LL NRL+ S+ G TRDSV I Sbjct: 162 -----LSEGTELPESESIRLRIAIIGRPNVGKSTFLNSLLAENRLIVSSEPGTTRDSVDI 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 S++ I + DTAG+R+ + + ++LE + V+KS++S++ I++LD+ + E+QDL Sbjct: 217 SYDHNGKLITLIDTAGIRRKANVVDNLESRFVEKSIESIKRSHVVILMLDSLLGIEQQDL 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQ--IGDIYIN----TISG 358 I ++ G +++ LNKWD++ +D R+K IK + Q + +++ TIS Sbjct: 277 SIAEAAIKGGKGIIIVLNKWDLIG------KDDRSKLIKFVKQQEVTRLFLEVPTVTISA 330 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 G D++ LE+++ +I+T+ LN+WL ++ P I R ++KYI QI + Sbjct: 331 LKGMRCGDVIDKCLEVSESLNKKISTAKLNNWLIDAVEKHSHPLIKGREIKMKYIAQIGT 390 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIK 469 PP+F + C P + ESYKRYL N LR NF + G+P+R+ + +KNPY+K Sbjct: 391 KPPAFSLVCNVPESVDESYKRYLTNGLRKNFFVEGVPVRLLLKKNKNPYVK 441 Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust. Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 4/98 (4%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 L+I ++G PN GKSTL NRL+G + G+TRD + ++ DT G Sbjct: 2 LKIVIIGLPNAGKSTLFNRLVGRKAAVVSDIPGVTRDRREGIGRISDLEFKVIDTGGWND 61 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 + S + +++ S+ + + L+DA + E+ Sbjct: 62 QT----SFSLQVIEQIEFSLSSADVVFFLVDAKVQNEQ 95 >gi|262066723|ref|ZP_06026335.1| ribosome-associated GTPase EngA [Fusobacterium periodonticum ATCC 33693] gi|291379522|gb|EFE87040.1| ribosome-associated GTPase EngA [Fusobacterium periodonticum ATCC 33693] Length = 441 Score = 298 bits (764), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 163/461 (35%), Positives = 259/461 (56%), Gaps = 32/461 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTLFN L+ K+A+V N PG+TRDRLY +G F IVDT G+ Sbjct: 5 IAIVGRPNVGKSTLFNNLIGDKIAIVDNLPGVTRDRLYRDTEWSGSEFVIVDTGGLEPRN 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N + ++ +Q E+A+NEA +ILF++D KAG+ P D I LRKKN P+I+ NK+D Sbjct: 65 NDFLMTKIKEQAEVAMNEADVILFVVDGKAGLNPLDDEIAYILRKKNKPVILCVNKIDNF 124 Query: 125 IAQR-NFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF-KQKYPNHPLEMIENNKRNE 182 Q+ + Y+ Y L F+ +V IS EH + ++ ++ +I K +P ++ Sbjct: 125 FEQQDDIYDFYGLGFEYLVPISGEHKVNLGDMLDIVVEIIGKMDFPEEDEDV-------- 176 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 L++AV+G+PN GKS+L+N+L G R + +G TRD++ Sbjct: 177 ---------------------LKLAVIGKPNAGKSSLVNKLSGSERTIVSDIAGTTRDAI 215 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 +K++ I DTAG+R+ S++ ESLE +V ++++S++ + I++LDA +Q Sbjct: 216 DTLIEYKDNKYMIIDTAGIRRKSKVEESLEYYSVLRALKSIKRADVCILMLDAKEGLTEQ 275 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNL-LQDLRTKAIKNLPQIGDIYINTISGRTG 361 D RI +++ +NKWD+V +K N+ ++ ++ + LP + I +S TG Sbjct: 276 DKRIAGIAAEELKPIIVVMNKWDLVENKNNVTMKKMKEELYAELPFLSYAPIEFVSALTG 335 Query: 362 EGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 + +L+ I + + RI+T LN+ L+ L N PPT R ++ Y TQ+ +PP Sbjct: 336 QRTTNLLEISDRIYEEYTKRISTGLLNTVLKDAILMNNPPTRKGRLIKINYATQVSVAPP 395 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 F++FC +P I SY RY+ N+ R F G PI + F++ Sbjct: 396 KFVLFCNYPELIHFSYARYIENKFREAFGFDGSPIMISFEA 436 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 64/125 (51%), Gaps = 6/125 (4%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + +A++G PN GKS+L N+L + +V + G TRD + + I+DTAGI Sbjct: 176 VLKLAVIGKPNAGKSSLVNKLSGSERTIVSDIAGTTRDAIDTLIEYKDNKYMIIDTAGIR 235 Query: 62 DGKNCSIAKQMNDQTEL----AINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIV 117 + + + + + L +I A + + ++D+K G+T D I ++ PII+V Sbjct: 236 --RKSKVEESLEYYSVLRALKSIKRADVCILMLDAKEGLTEQDKRIAGIAAEELKPIIVV 293 Query: 118 SNKMD 122 NK D Sbjct: 294 MNKWD 298 >gi|256846327|ref|ZP_05551784.1| ribosome-associated GTPase EngA [Fusobacterium sp. 3_1_36A2] gi|256718096|gb|EEU31652.1| ribosome-associated GTPase EngA [Fusobacterium sp. 3_1_36A2] Length = 440 Score = 298 bits (763), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 162/461 (35%), Positives = 258/461 (55%), Gaps = 32/461 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFN LV K+A+V + PG+TRDRLY A +G F IVDT G+ Sbjct: 5 VAIVGRPNVGKSTLFNNLVGDKIAIVDDLPGVTRDRLYRDAEWSGSEFVIVDTGGLEPRN 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N + ++ +Q E+A+NEA +ILF++D K+G+ P D I LRKKN P+I+ NK+D Sbjct: 65 NDFLMAKIKEQAEVAMNEADVILFIVDGKSGLNPLDEEIAYILRKKNKPVILCVNKIDNF 124 Query: 125 IAQR-NFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF-KQKYPNHPLEMIENNKRNE 182 Q+ + Y+ Y L F+ +V IS EH + ++ ++ I K +P E+ Sbjct: 125 FEQQDDVYDFYGLGFEYLVPISGEHKINLGDMLDIVVDIIGKMDFPEEDEEV-------- 176 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 L++AV+G+PN GKS+L+N+L G R + +G TRD++ Sbjct: 177 ---------------------LKLAVIGKPNAGKSSLVNKLSGEERTIVSDIAGTTRDAI 215 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 +K++ I DTAG+R+ S++ ESLE +V +++++++ + I++LDA +Q Sbjct: 216 DTLIEYKDNKYMIIDTAGIRRKSKVEESLEYYSVLRALKAIKRADVCILMLDAKEGLTEQ 275 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNL-LQDLRTKAIKNLPQIGDIYINTISGRTG 361 D RI +++ +NKWD+V +K N ++ ++ + LP + I +S TG Sbjct: 276 DKRIAGIAAEELKPIIIVMNKWDLVKNKNNATMKKMKEELYAELPFLSYAPIEFVSALTG 335 Query: 362 EGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 + +L+ I + + RI+T LN+ L+ L N PPT R ++ Y TQ+ +PP Sbjct: 336 QRTTNLLEIADRIYEEYTKRISTGLLNTILKDAVLMNNPPTRKGRVIKINYATQVSVAPP 395 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 F++FC +P I SY RY+ N+ R F G PI + F++ Sbjct: 396 KFVLFCNYPELIHFSYARYIENKFREAFGFDGSPIMISFEN 436 Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 47/178 (26%), Positives = 86/178 (48%), Gaps = 16/178 (8%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + +A++G PN GKS+L N+L ++ +V + G TRD + + I+DTAGI Sbjct: 176 VLKLAVIGKPNAGKSSLVNKLSGEERTIVSDIAGTTRDAIDTLIEYKDNKYMIIDTAGIR 235 Query: 62 DGKNCSIAKQMNDQTEL----AINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIV 117 + + + + + L AI A + + ++D+K G+T D I ++ PIIIV Sbjct: 236 --RKSKVEESLEYYSVLRALKAIKRADVCILMLDAKEGLTEQDKRIAGIAAEELKPIIIV 293 Query: 118 SNKMD----------TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQ 165 NK D ++ + + E+ L + I +SA T+ L + +I+++ Sbjct: 294 MNKWDLVKNKNNATMKKMKEELYAELPFLSYAPIEFVSALTGQRTTNLLEIADRIYEE 351 >gi|269837313|ref|YP_003319541.1| small GTP-binding protein [Sphaerobacter thermophilus DSM 20745] gi|269786576|gb|ACZ38719.1| small GTP-binding protein [Sphaerobacter thermophilus DSM 20745] Length = 445 Score = 298 bits (762), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 165/467 (35%), Positives = 249/467 (53%), Gaps = 35/467 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAG----- 59 +AIVG PN GKSTLFNRLV ++ A+V + PG TRDR+Y +A GV F++VDT G Sbjct: 6 VAIVGRPNTGKSTLFNRLVGERRAIVEDLPGTTRDRIYAEASWGGVTFDVVDTGGLLSEQ 65 Query: 60 -IADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVS 118 I IA+ +Q ELAI +A +I+F++D +AG+T DH + +R+ P+++ Sbjct: 66 EIERASAAEIAQATQEQAELAIEQADVIVFMVDGQAGVTAGDHEVADLIRRAKRPVLLAV 125 Query: 119 NKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 NK + R Q E Y L + ISA H G +L I H E E Sbjct: 126 NKAEARNIQDAAVEFYELGLGDPYPISALHGTGVGDLLDAIIA--------HLPETTEAE 177 Query: 179 KRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 + EE P IA+VGRPNVGKS L+N LLG +R + S G T Sbjct: 178 R--EEVPS-------------------IAIVGRPNVGKSALLNALLGQSRQIVSSIPGTT 216 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RD+V W + + + DTAG+R+P RI +E+ +V +S ++V + ++++DAT P Sbjct: 217 RDAVDTEITWAGNRVVLVDTAGIRRPGRIERGIEKYSVLRSTRAVERADVAVLVIDATEP 276 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 F QD I ++ +++A+NKWD+V +++ KA + I I IS Sbjct: 277 FTAQDQAIAGAIAEAKKGIIVAVNKWDLVEKDHRTMKEFTEKAREAFHFISYAPIVFISA 336 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 TG+ ++ +M L I + RI T LN ++ ++PPPT N++ ++ Y+TQ Sbjct: 337 LTGQRVNQVMELALAIFAERQRRIPTGELNRVIRDAVYRHPPPTKPNKWLKIYYVTQADV 396 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 +PP+F+ F P + SYKRYL N LR ++ +G PI M F++ + Sbjct: 397 NPPTFVFFVNAPQNVHFSYKRYLENTLRKHYGFTGTPIVMRFRARRG 443 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 43/121 (35%), Positives = 62/121 (51%), Gaps = 2/121 (1%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI-AD 62 +IAIVG PNVGKS L N L+ + +V + PG TRD + + G +VDTAGI Sbjct: 183 SIAIVGRPNVGKSALLNALLGQSRQIVSSIPGTTRDAVDTEITWAGNRVVLVDTAGIRRP 242 Query: 63 GK-NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 G+ I K ++ A+ A + + +ID+ T D AI + + II+ NK Sbjct: 243 GRIERGIEKYSVLRSTRAVERADVAVLVIDATEPFTAQDQAIAGAIAEAKKGIIVAVNKW 302 Query: 122 D 122 D Sbjct: 303 D 303 >gi|237739602|ref|ZP_04570083.1| GTP-binding protein engA [Fusobacterium sp. 2_1_31] gi|229423210|gb|EEO38257.1| GTP-binding protein engA [Fusobacterium sp. 2_1_31] Length = 441 Score = 297 bits (761), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 163/460 (35%), Positives = 260/460 (56%), Gaps = 30/460 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTLFN L+ K+A+V + PG+TRDRLY +G F IVDT G+ Sbjct: 5 IAIVGRPNVGKSTLFNNLIGDKIAIVDDLPGVTRDRLYRDTEWSGSEFVIVDTGGLEPRN 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N + ++ +Q E+A+NEA +ILF++D KAG+ P D I LRKKN P+I+ NK+D Sbjct: 65 NDFLMTKIKEQAEVAMNEADVILFVVDGKAGLNPLDDEIAYILRKKNKPVILCVNKIDNY 124 Query: 125 IAQR-NFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 Q+ + Y+ Y L F+ +V IS EH + ++ ++ +I + + Sbjct: 125 FEQQDDIYDFYGLGFEYLVPISGEHKVNLGDMLDIVVEIIGRM----------------D 168 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 P+E+ L++AV+G+PN GKS+L+N+L G R + +G TRD++ Sbjct: 169 FPEED------------EDVLKLAVIGKPNAGKSSLVNKLSGSERTIVSDIAGTTRDAID 216 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 +K++ I DTAG+R+ S++ ESLE +V ++++S++ + I++LDA +QD Sbjct: 217 TLIEYKDNKYMIIDTAGIRRKSKVEESLEYYSVLRALKSIKRADVCILMLDAKEGLTEQD 276 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNL-LQDLRTKAIKNLPQIGDIYINTISGRTGE 362 RI +++ +NKWD+V +K N+ ++ ++ + LP + I IS TG+ Sbjct: 277 KRIAGIAAEELKPIIIVMNKWDLVENKNNVTMKKMKEELYAELPFLSYAPIEFISALTGQ 336 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 +L+ I + + RI+T LN+ L+ L N PPT R ++ Y TQ+ +PP Sbjct: 337 RTTNLLEISDRIYEEYTKRISTGLLNTVLKDAILMNNPPTRKGRLIKINYATQVSVAPPK 396 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 F++FC +P I SY RY+ N+ R F G PI + F++ Sbjct: 397 FVLFCNYPELIHFSYARYIENKFREAFGFDGSPIMISFEA 436 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 47/178 (26%), Positives = 85/178 (47%), Gaps = 16/178 (8%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + +A++G PN GKS+L N+L + +V + G TRD + + I+DTAGI Sbjct: 176 VLKLAVIGKPNAGKSSLVNKLSGSERTIVSDIAGTTRDAIDTLIEYKDNKYMIIDTAGIR 235 Query: 62 DGKNCSIAKQMNDQTEL----AINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIV 117 + + + + + L +I A + + ++D+K G+T D I ++ PIIIV Sbjct: 236 --RKSKVEESLEYYSVLRALKSIKRADVCILMLDAKEGLTEQDKRIAGIAAEELKPIIIV 293 Query: 118 SNKMD----------TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQ 165 NK D ++ + + E+ L + I ISA T+ L + +I+++ Sbjct: 294 MNKWDLVENKNNVTMKKMKEELYAELPFLSYAPIEFISALTGQRTTNLLEISDRIYEE 351 >gi|238921035|ref|YP_002934550.1| GTP-binding protein EngA [Edwardsiella ictaluri 93-146] gi|259645874|sp|C5BES7|DER_EDWI9 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|238870604|gb|ACR70315.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146] Length = 494 Score = 297 bits (760), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 168/478 (35%), Positives = 268/478 (56%), Gaps = 15/478 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A +NG F I+DT GI Sbjct: 1 MIPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVNGHEFIIIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + M +Q+ +AI EA ++LFL+D++ G+ P D AI LR ++ +V+NK Sbjct: 61 -DGTENGVETHMAEQSLMAIEEADIVLFLVDARDGLLPADEAIARHLRSRDKATFLVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL-HSVIFKIFKQKYPNHPLEMIENNK 179 D A+ + YSL E+ I+A H G ++L + Q+ P L E N Sbjct: 120 TDGIDAEVAVGDFYSLGMGEVHPIAASHGRGVTQLIEDALVPFIPQEAPAPVLSEEEENA 179 Query: 180 R---NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSG 236 E+ + E + + I++P++IA+VGRPNVGKSTL NR+LG +R++ G Sbjct: 180 AYWAELEAEADGEAQEEEEAFDPINQPIKIAIVGRPNVGKSTLTNRILGEDRVVVYDMPG 239 Query: 237 ITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDAT 296 TRDS+ I + DTAG+RK ++T+++E+ +V K++Q++ ++++DA Sbjct: 240 TTRDSIYIPMERDEREYVLIDTAGVRKRGKVTDTVEKFSVIKTLQAIEDANVVLLVIDAR 299 Query: 297 IPFEKQDLRIVDSVFNTGHAVVLALNKWDMVS----DKLNLLQDLRTKAIKNLPQIGDIY 352 QDL ++ + N+G ++V+ +NKWD +S +++ + DLR L + Sbjct: 300 QGISDQDLSLLGFILNSGRSLVVVVNKWDGLSLEVKEQVKDMLDLR------LGFVDFAR 353 Query: 353 INTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKY 412 I+ IS G G+ +L S+ E + R++T+ L + Q + PP + R +LKY Sbjct: 354 IHFISALHGSGVGNLFESIQEAYESATRRVSTAMLTRIMTMAQDDHQPPMVRGRRVKLKY 413 Query: 413 ITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I +P+SYKRYL+N R + ++ G PIR+ F+ NP+ K Sbjct: 414 AHAGGYNPPIVVIHGNQVKDLPDSYKRYLMNYFRRSLNVMGTPIRIQFKEGDNPFANK 471 >gi|294783341|ref|ZP_06748665.1| ribosome-associated GTPase EngA [Fusobacterium sp. 1_1_41FAA] gi|294480219|gb|EFG27996.1| ribosome-associated GTPase EngA [Fusobacterium sp. 1_1_41FAA] Length = 441 Score = 297 bits (760), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 163/460 (35%), Positives = 260/460 (56%), Gaps = 30/460 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTLFN L+ K+A+V + PG+TRDRLY +G F IVDT G+ Sbjct: 5 IAIVGRPNVGKSTLFNNLIGDKIAIVDDLPGVTRDRLYRDTEWSGSEFVIVDTGGLEPRN 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N + ++ +Q E+A+NEA +ILF++D KAG+ P D I LRKKN P+I+ NK+D Sbjct: 65 NDFLMTKIKEQAEVAMNEADVILFVVDGKAGLNPLDDEIAYILRKKNKPVILCVNKIDNY 124 Query: 125 IAQR-NFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 Q+ + Y+ Y L F+ +V IS EH + ++ ++ +I + + Sbjct: 125 FEQQDDIYDFYGLGFEYLVPISGEHKVNLGDMLDIVVEIIGRM----------------D 168 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 P+E+ L++AV+G+PN GKS+L+N+L G R + +G TRD++ Sbjct: 169 FPEED------------EDVLKLAVIGKPNAGKSSLVNKLSGSERTIVSDIAGTTRDAID 216 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 +K++ I DTAG+R+ S++ ESLE +V ++++S++ + I++LDA +QD Sbjct: 217 TLIEYKDNKYMIIDTAGIRRKSKVEESLEYYSVLRALKSIKRADVCILMLDAKEGLTEQD 276 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNL-LQDLRTKAIKNLPQIGDIYINTISGRTGE 362 RI +++ +NKWD+V +K N+ ++ ++ + LP + I IS TG+ Sbjct: 277 KRIAGIAAEELKPIIVVMNKWDLVENKNNVTMKKMKEELYAELPFLSYAPIEFISALTGQ 336 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 +L+ I + + RI+T LN+ L+ L N PPT R ++ Y TQ+ +PP Sbjct: 337 RTTNLLEISDRIYEEYTKRISTGLLNTVLKDAILMNNPPTRKGRLIKINYATQVSVAPPK 396 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 F++FC +P I SY RY+ N+ R F G PI + F++ Sbjct: 397 FVLFCNYPELIHFSYARYIENKFREAFGFDGSPIMISFEA 436 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/178 (25%), Positives = 85/178 (47%), Gaps = 16/178 (8%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + +A++G PN GKS+L N+L + +V + G TRD + + I+DTAGI Sbjct: 176 VLKLAVIGKPNAGKSSLVNKLSGSERTIVSDIAGTTRDAIDTLIEYKDNKYMIIDTAGIR 235 Query: 62 DGKNCSIAKQMNDQTEL----AINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIV 117 + + + + + L +I A + + ++D+K G+T D I ++ PII+V Sbjct: 236 --RKSKVEESLEYYSVLRALKSIKRADVCILMLDAKEGLTEQDKRIAGIAAEELKPIIVV 293 Query: 118 SNKMD----------TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQ 165 NK D ++ + + E+ L + I ISA T+ L + +I+++ Sbjct: 294 MNKWDLVENKNNVTMKKMKEELYAELPFLSYAPIEFISALTGQRTTNLLEISDRIYEE 351 >gi|19703515|ref|NP_603077.1| GTP-binding protein EngA [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|26006718|sp|Q8RGV7|DER_FUSNN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|19713605|gb|AAL94376.1| GTP-binding protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 440 Score = 296 bits (758), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 162/461 (35%), Positives = 257/461 (55%), Gaps = 32/461 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTLFN LV K+A+V + PG+TRDRLY +G F IVDT G+ Sbjct: 5 IAIVGRPNVGKSTLFNNLVGDKIAIVDDLPGVTRDRLYRDTEWSGSEFVIVDTGGLEPRN 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N + ++ +Q E+A+NEA +ILF++D K+G+ P D I LRKKN P+I+ NK+D Sbjct: 65 NDFLMAKIKEQAEVAMNEADVILFVVDGKSGLNPLDEEIAYILRKKNKPVILCVNKIDNF 124 Query: 125 IAQR-NFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF-KQKYPNHPLEMIENNKRNE 182 Q+ + Y+ Y L F+ +V IS EH + ++ ++ I K +P E+ Sbjct: 125 FEQQDDVYDFYGLGFEYLVPISGEHKVNLGDMLDIVVDIIGKMDFPEEDEEV-------- 176 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 L++AV+G+PN GKS+L+N+L G R + +G TRD++ Sbjct: 177 ---------------------LKLAVIGKPNAGKSSLVNKLSGEERTIVSDIAGTTRDAI 215 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 +K++ I DTAG+R+ S++ ESLE +V +++++++ + I++LDA +Q Sbjct: 216 DTLIEYKDNKYMIIDTAGIRRKSKVEESLEYYSVLRALKAIKRADVCILMLDAKEGLTEQ 275 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNL-LQDLRTKAIKNLPQIGDIYINTISGRTG 361 D RI +++ +NKWD+V +K N ++ ++ + LP + I +S TG Sbjct: 276 DKRIAGIAAEELKPIIIVMNKWDLVENKNNATMKKIKEELYAELPFLSYAPIEFVSALTG 335 Query: 362 EGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 + +L+ I + + RI+T LN+ L+ L N PPT R ++ Y TQ+ +PP Sbjct: 336 QRTTNLLEIADRIYEEYTKRISTGLLNTILKDAVLMNNPPTRKGRVIKINYATQVSVAPP 395 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 F++FC +P I SY RY+ N+ R F G PI + F++ Sbjct: 396 KFVLFCNYPELIHFSYARYIENKFREAFGFDGSPIMISFEN 436 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 48/178 (26%), Positives = 86/178 (48%), Gaps = 16/178 (8%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + +A++G PN GKS+L N+L ++ +V + G TRD + + I+DTAGI Sbjct: 176 VLKLAVIGKPNAGKSSLVNKLSGEERTIVSDIAGTTRDAIDTLIEYKDNKYMIIDTAGIR 235 Query: 62 DGKNCSIAKQMNDQTEL----AINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIV 117 + + + + + L AI A + + ++D+K G+T D I ++ PIIIV Sbjct: 236 --RKSKVEESLEYYSVLRALKAIKRADVCILMLDAKEGLTEQDKRIAGIAAEELKPIIIV 293 Query: 118 SNKMD----------TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQ 165 NK D +I + + E+ L + I +SA T+ L + +I+++ Sbjct: 294 MNKWDLVENKNNATMKKIKEELYAELPFLSYAPIEFVSALTGQRTTNLLEIADRIYEE 351 >gi|294784590|ref|ZP_06749879.1| ribosome-associated GTPase EngA [Fusobacterium sp. 3_1_27] gi|294487806|gb|EFG35165.1| ribosome-associated GTPase EngA [Fusobacterium sp. 3_1_27] Length = 440 Score = 296 bits (758), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 161/461 (34%), Positives = 258/461 (55%), Gaps = 32/461 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFN LV K+A+V + PG+TRDRLY +G F IVDT G+ Sbjct: 5 VAIVGRPNVGKSTLFNNLVGDKIAIVDDLPGVTRDRLYRDTEWSGSEFVIVDTGGLEPRN 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N + ++ +Q E+A+NEA +ILF++D K+G+ P D I LRKKN P+I+ NK+D Sbjct: 65 NDFLMAKIKEQAEVAMNEADVILFVVDGKSGLNPLDEEIAYILRKKNKPVILCVNKIDNF 124 Query: 125 IAQR-NFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF-KQKYPNHPLEMIENNKRNE 182 Q+ + Y+ Y L F+ +V IS EH + ++ ++ +I K +P E+ Sbjct: 125 FEQQDDVYDFYGLGFEYLVPISGEHKVNLGDMLDIVVEIIGKMDFPEEDEEV-------- 176 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 L++AV+G+PN GKS+L+N+L G R + +G TRD++ Sbjct: 177 ---------------------LKLAVIGKPNAGKSSLVNKLSGEERTIVSDIAGTTRDAI 215 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 +K++ I DTAG+R+ S++ ESLE +V +++++++ + I++LDA +Q Sbjct: 216 DTLIEYKDNKYMIIDTAGIRRKSKVEESLEYYSVLRALKAIKRADVCILMLDAKEGLTEQ 275 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNL-LQDLRTKAIKNLPQIGDIYINTISGRTG 361 D RI +++ +NKWD+V +K N ++ ++ + LP + I +S TG Sbjct: 276 DKRIAGIAAEELKPIIIVMNKWDLVENKNNATMKKMKEELYAELPFLSYAPIEFVSALTG 335 Query: 362 EGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 + +L+ I + + RI+T LN+ L+ L N PPT R ++ Y TQ+ +PP Sbjct: 336 QRTTNLLEIANRIYEEYTKRISTGLLNTVLKDAVLMNNPPTRKGRVIKINYATQVSVAPP 395 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 F++FC +P I SY RY+ N+ R F G PI + F++ Sbjct: 396 KFVLFCNYPELIHFSYARYIENKFREAFGFDGSPIMISFEN 436 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 47/178 (26%), Positives = 86/178 (48%), Gaps = 16/178 (8%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + +A++G PN GKS+L N+L ++ +V + G TRD + + I+DTAGI Sbjct: 176 VLKLAVIGKPNAGKSSLVNKLSGEERTIVSDIAGTTRDAIDTLIEYKDNKYMIIDTAGIR 235 Query: 62 DGKNCSIAKQMNDQTEL----AINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIV 117 + + + + + L AI A + + ++D+K G+T D I ++ PIIIV Sbjct: 236 --RKSKVEESLEYYSVLRALKAIKRADVCILMLDAKEGLTEQDKRIAGIAAEELKPIIIV 293 Query: 118 SNKMD----------TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQ 165 NK D ++ + + E+ L + I +SA T+ L + +I+++ Sbjct: 294 MNKWDLVENKNNATMKKMKEELYAELPFLSYAPIEFVSALTGQRTTNLLEIANRIYEE 351 >gi|296328064|ref|ZP_06870598.1| ribosome-associated GTPase EngA [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296154840|gb|EFG95623.1| ribosome-associated GTPase EngA [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 440 Score = 295 bits (756), Expect = 8e-78, Method: Compositional matrix adjust. Identities = 162/461 (35%), Positives = 257/461 (55%), Gaps = 32/461 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFN LV K+A+V + PG+TRDRLY +G F IVDT G+ Sbjct: 5 VAIVGRPNVGKSTLFNNLVGDKIAIVDDLPGVTRDRLYRDTEWSGSEFVIVDTGGLEPRN 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N + ++ +Q E+A+NEA +ILF++D K+G+ P D I LRKKN P+I+ NK+D Sbjct: 65 NDFLMAKIKEQAEVAMNEADVILFVVDGKSGLNPLDEEIAYILRKKNKPVILCVNKIDNF 124 Query: 125 IAQR-NFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF-KQKYPNHPLEMIENNKRNE 182 Q+ + Y+ Y L F+ +V IS EH + ++ ++ I K +P E+ Sbjct: 125 FEQQDDVYDFYGLGFEYLVPISGEHKVNLGDMLDIVVDIIGKMDFPEEDEEV-------- 176 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 L++AV+G+PN GKS+L+N+L G R + +G TRD++ Sbjct: 177 ---------------------LKLAVIGKPNAGKSSLVNKLSGEERTIVSDIAGTTRDAI 215 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 +K++ I DTAG+R+ S++ ESLE +V +++++++ + I++LDA +Q Sbjct: 216 DTLIEYKDNKYMIIDTAGIRRKSKVEESLEYYSVLRALKAIKRADVCILMLDAKEGLTEQ 275 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNL-LQDLRTKAIKNLPQIGDIYINTISGRTG 361 D RI +++ +NKWD+V +K N ++ ++ + LP + I IS TG Sbjct: 276 DKRIAGIAHEELKPIIIVMNKWDLVENKNNATMKKMKEELYAELPFLSYAPIEFISALTG 335 Query: 362 EGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 + +L+ I + + RI+T LN+ L+ L N PPT R ++ Y TQ+ +PP Sbjct: 336 QRTTNLLEISDRIYEEYTKRISTGLLNTILKDAVLMNNPPTRKGRVIKINYATQVSVAPP 395 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 F++FC +P I SY RY+ N+ R F G PI + F++ Sbjct: 396 RFVLFCNYPELIHFSYARYIENKFREAFGFDGSPIMISFEN 436 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 48/178 (26%), Positives = 86/178 (48%), Gaps = 16/178 (8%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + +A++G PN GKS+L N+L ++ +V + G TRD + + I+DTAGI Sbjct: 176 VLKLAVIGKPNAGKSSLVNKLSGEERTIVSDIAGTTRDAIDTLIEYKDNKYMIIDTAGIR 235 Query: 62 DGKNCSIAKQMNDQTEL----AINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIV 117 + + + + + L AI A + + ++D+K G+T D I ++ PIIIV Sbjct: 236 --RKSKVEESLEYYSVLRALKAIKRADVCILMLDAKEGLTEQDKRIAGIAHEELKPIIIV 293 Query: 118 SNKMD----------TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQ 165 NK D ++ + + E+ L + I ISA T+ L + +I+++ Sbjct: 294 MNKWDLVENKNNATMKKMKEELYAELPFLSYAPIEFISALTGQRTTNLLEISDRIYEE 351 >gi|256027086|ref|ZP_05440920.1| GTP-binding protein [Fusobacterium sp. D11] gi|289765066|ref|ZP_06524444.1| GTP-binding protein [Fusobacterium sp. D11] gi|289716621|gb|EFD80633.1| GTP-binding protein [Fusobacterium sp. D11] Length = 440 Score = 295 bits (755), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 161/461 (34%), Positives = 259/461 (56%), Gaps = 32/461 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFN LV K+A+V + PG+TRDRLY +G F IVDT G+ Sbjct: 5 VAIVGRPNVGKSTLFNNLVGDKIAIVDDLPGVTRDRLYRDTEWSGSEFVIVDTGGLEPRN 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N + ++ +Q E+A+NEA +ILF++D K+G+ P D I LRKKN P+I+ NK+D Sbjct: 65 NDFLMAKIKEQAEVAMNEADVILFVVDGKSGLNPLDEEIAYILRKKNKPVILCVNKIDNF 124 Query: 125 IAQR-NFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF-KQKYPNHPLEMIENNKRNE 182 Q+ + Y+ Y L F+ +V IS EH + ++ ++ I K +P Sbjct: 125 FEQQDDVYDFYGLGFEYLVPISGEHKVNLGDMLDIVVDIIGKMDFPEE------------ 172 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 +E++ L++AV+G+PN GKS+L+N+L G R + +G TRD++ Sbjct: 173 ---EEDV--------------LKLAVIGKPNAGKSSLVNKLSGEERTIVSDIAGTTRDAI 215 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 +K++ I DTAG+R+ S++ ESLE +V +++++++ + I++LDA +Q Sbjct: 216 DTLIEYKDNKYMIIDTAGIRRKSKVEESLEYYSVLRALKAIKRADVCILMLDAKEGLTEQ 275 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNL-LQDLRTKAIKNLPQIGDIYINTISGRTG 361 D RI +++ +NKWD+V +K N ++ ++ + LP + I +S TG Sbjct: 276 DKRIAGIAAEELKPIIIVMNKWDLVENKNNATMKKMKEELYAELPFLSYAPIEFVSALTG 335 Query: 362 EGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 + +L+ I + + RI+T LN+ L+ L N PPT R ++ Y TQ+ +PP Sbjct: 336 QRTTNLLEIADRIYEEYTKRISTGLLNTILKDAVLMNNPPTRKGRVIKINYATQVSVAPP 395 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 F++FC +P I SY RY+ N+ R F G PI + F++ Sbjct: 396 KFVLFCNYPELIHFSYARYIENKFREAFGFDGSPIMISFEN 436 Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 47/178 (26%), Positives = 86/178 (48%), Gaps = 16/178 (8%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + +A++G PN GKS+L N+L ++ +V + G TRD + + I+DTAGI Sbjct: 176 VLKLAVIGKPNAGKSSLVNKLSGEERTIVSDIAGTTRDAIDTLIEYKDNKYMIIDTAGIR 235 Query: 62 DGKNCSIAKQMNDQTEL----AINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIV 117 + + + + + L AI A + + ++D+K G+T D I ++ PIIIV Sbjct: 236 --RKSKVEESLEYYSVLRALKAIKRADVCILMLDAKEGLTEQDKRIAGIAAEELKPIIIV 293 Query: 118 SNKMD----------TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQ 165 NK D ++ + + E+ L + I +SA T+ L + +I+++ Sbjct: 294 MNKWDLVENKNNATMKKMKEELYAELPFLSYAPIEFVSALTGQRTTNLLEIADRIYEE 351 >gi|237741193|ref|ZP_04571674.1| GTP-binding protein [Fusobacterium sp. 4_1_13] gi|229430725|gb|EEO40937.1| GTP-binding protein [Fusobacterium sp. 4_1_13] Length = 440 Score = 295 bits (754), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 160/461 (34%), Positives = 258/461 (55%), Gaps = 32/461 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFN LV K+A+V + PG+TRDRLY +G F IVDT G+ Sbjct: 5 VAIVGRPNVGKSTLFNNLVGDKIAIVDDLPGVTRDRLYRDTEWSGSEFVIVDTGGLEPRN 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N + ++ +Q E+A+NEA +ILF++D K+G+ P D I LRKKN P+I+ NK+D Sbjct: 65 NDFLMAKIKEQAEVAMNEADVILFVVDGKSGLNPLDEEIAYILRKKNKPVILCVNKIDNF 124 Query: 125 IAQR-NFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF-KQKYPNHPLEMIENNKRNE 182 Q+ + Y+ Y L F+ +V IS EH + ++ ++ +I K +P ++ Sbjct: 125 FEQQDDVYDFYGLGFEYLVPISGEHKVNLGDMLDIVVEIIGKMDFPEEDEDV-------- 176 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 L++AV+G+PN GKS+L+N+L G R + +G TRD++ Sbjct: 177 ---------------------LKLAVIGKPNAGKSSLVNKLSGEERTIVSDIAGTTRDAI 215 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 +K++ I DTAG+R+ S++ ESLE +V +++++++ + I++LDA +Q Sbjct: 216 DTLIEYKDNKYMIIDTAGIRRKSKVEESLEYYSVLRALKAIKRADVCILMLDAKEGLTEQ 275 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNL-LQDLRTKAIKNLPQIGDIYINTISGRTG 361 D RI +++ +NKWD+V +K N ++ ++ + LP + I +S TG Sbjct: 276 DKRIAGIAAEELKPIIIVMNKWDLVENKNNATMKKMKEELYAELPFLSYAPIEFVSALTG 335 Query: 362 EGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 + +L+ I + + RI+T LN+ L+ L N PPT R ++ Y TQ+ +PP Sbjct: 336 QRTTNLLEIANRIYEEYTKRISTGLLNTVLKDAVLMNNPPTRKGRVIKINYATQVSVAPP 395 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 F++FC +P I SY RY+ N+ R F G PI + F++ Sbjct: 396 KFVLFCNYPELIHFSYARYIENKFREAFGFDGSPIMISFEN 436 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 47/178 (26%), Positives = 86/178 (48%), Gaps = 16/178 (8%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + +A++G PN GKS+L N+L ++ +V + G TRD + + I+DTAGI Sbjct: 176 VLKLAVIGKPNAGKSSLVNKLSGEERTIVSDIAGTTRDAIDTLIEYKDNKYMIIDTAGIR 235 Query: 62 DGKNCSIAKQMNDQTEL----AINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIV 117 + + + + + L AI A + + ++D+K G+T D I ++ PIIIV Sbjct: 236 --RKSKVEESLEYYSVLRALKAIKRADVCILMLDAKEGLTEQDKRIAGIAAEELKPIIIV 293 Query: 118 SNKMD----------TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQ 165 NK D ++ + + E+ L + I +SA T+ L + +I+++ Sbjct: 294 MNKWDLVENKNNATMKKMKEELYAELPFLSYAPIEFVSALTGQRTTNLLEIANRIYEE 351 >gi|269140141|ref|YP_003296842.1| GTP-binding protein [Edwardsiella tarda EIB202] gi|267985802|gb|ACY85631.1| GTP-binding protein [Edwardsiella tarda EIB202] gi|304559975|gb|ADM42639.1| GTP-binding protein EngA [Edwardsiella tarda FL6-60] Length = 494 Score = 295 bits (754), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 166/480 (34%), Positives = 268/480 (55%), Gaps = 19/480 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A +NG F I+DT GI Sbjct: 1 MIPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVNGHEFIIIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + M +Q+ +AI EA ++LFL+D++ G+ P D AI LR ++ +V+NK Sbjct: 61 -DGTENGVETHMAEQSLMAIEEADIVLFLVDARDGLLPADEAIARHLRSRDKATFLVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 D A+ + Y+L E+ I+A H G ++L F P P ++ + Sbjct: 120 TDGIDAEVAIGDFYALGMGEVHPIAASHGRGVTQLIEDALVPFIP--PEEPAPVLSEEEE 177 Query: 181 NE------ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQ 234 N E+ + E + + I++P++IA+VGRPNVGKSTL NR+LG +R++ Sbjct: 178 NAAYWAALEADADGEAQEEEDAFDPINQPIKIAIVGRPNVGKSTLTNRILGEDRVVVYDM 237 Query: 235 SGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLD 294 G TRDS+ I + DTAG+RK ++T+++E+ +V K++Q++ ++++D Sbjct: 238 PGTTRDSIYIPMERDEREYVLIDTAGVRKRGKVTDTVEKFSVIKTLQAIEDANVVLLVID 297 Query: 295 ATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVS----DKLNLLQDLRTKAIKNLPQIGD 350 A QDL ++ + N+G ++V+ +NKWD +S +++ + DLR L + Sbjct: 298 AREGISDQDLSLLGFILNSGRSLVVVVNKWDGLSLEVKEQVKDMLDLR------LGFVDF 351 Query: 351 IYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRL 410 I+ IS G G+ +L S+ E + R++T+ L + Q + PP + R +L Sbjct: 352 ARIHFISALHGSGVGNLFESIQEAYESATRRVSTAMLTRIMTMAQDDHQPPMVRGRRVKL 411 Query: 411 KYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 KY +PP +I +P+SYKRYL+N R + ++ G PIR+ F+ NP+ K Sbjct: 412 KYAHAGGYNPPIVVIHGNQVKDLPDSYKRYLMNYFRRSLNVMGTPIRIQFKEGDNPFANK 471 >gi|300724175|ref|YP_003713492.1| GTP-binding protein [Xenorhabdus nematophila ATCC 19061] gi|297630709|emb|CBJ91374.1| GTP-binding protein, essential for cell growth [Xenorhabdus nematophila ATCC 19061] Length = 496 Score = 295 bits (754), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 169/489 (34%), Positives = 263/489 (53%), Gaps = 34/489 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A + G F I+DT GI Sbjct: 1 MIPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGQEFIIIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + M Q+ +AI EA ++LF++D+++G+ P DHAI LR + +V+NK Sbjct: 61 -DGTEEGVETHMAAQSLMAIEEADIVLFMVDARSGLMPADHAIAKHLRSREKATFLVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNH---------- 170 D + + E YSL +I I+A H G ++L + + F K Sbjct: 120 TDGIDIETSVAEFYSLGLGDIYSIAASHGRGVTQLIERVLRPFSDKEETEEVELTEEEAN 179 Query: 171 -----PLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLG 225 +E E + E+ P+E + PL++A+VGRPNVGKSTL NR+LG Sbjct: 180 AAYWAEMEQAELDAAIEKEPEEEFDP--------TTLPLKLAIVGRPNVGKSTLTNRILG 231 Query: 226 YNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRT 285 R++ G TRDS+ I + DTAG+RK ++TE++E+ +V K++Q++ Sbjct: 232 EERVVVFDMPGTTRDSIYIPMERDGREYILIDTAGVRKRGKVTETVEKFSVIKTLQAIED 291 Query: 286 CETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVS----DKLNLLQDLRTKA 341 ++++DA QDL ++ + N+G ++V+A+NKWD +S D + + DLR Sbjct: 292 ANVVLLVIDAREGISDQDLSLLGFILNSGRSLVIAVNKWDGMSQEDKDHVKDMLDLR--- 348 Query: 342 IKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPP 401 L + ++ IS G G+ +L S+ E + R+ TS L ++ + + PP Sbjct: 349 ---LGFVDFARVHFISALHGSGVGNLFESIQEAYESATRRVNTSLLTRIMRMAEDDHQPP 405 Query: 402 TIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 I R ++KY +PP +I +P+SYKRYL+N R + + G PIR+ F+ Sbjct: 406 MIRGRRVKMKYAHAGGYNPPIVVIHGNQVTDLPDSYKRYLMNYFRRSLKVMGTPIRIQFK 465 Query: 462 SSKNPYIKK 470 NPY K Sbjct: 466 EGANPYAGK 474 >gi|237743522|ref|ZP_04574003.1| GTP-binding protein [Fusobacterium sp. 7_1] gi|229433301|gb|EEO43513.1| GTP-binding protein [Fusobacterium sp. 7_1] Length = 440 Score = 295 bits (754), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 160/461 (34%), Positives = 258/461 (55%), Gaps = 32/461 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFN LV K+A+V + PG+TRDRLY +G F IVDT G+ Sbjct: 5 VAIVGRPNVGKSTLFNNLVGDKIAIVDDLPGVTRDRLYRDTEWSGSEFVIVDTGGLEPRN 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N + ++ +Q E+A+NEA +ILF++D K+G+ P D I LRKKN P+I+ NK+D Sbjct: 65 NDFLMAKIKEQAEVAMNEADVILFVVDGKSGLNPLDEEIAYILRKKNKPVILCVNKIDNF 124 Query: 125 IAQR-NFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF-KQKYPNHPLEMIENNKRNE 182 Q+ + Y+ Y L F+ +V IS EH + ++ ++ I K +P ++ Sbjct: 125 FEQQDDVYDFYGLGFEYLVPISGEHKVNLGDMLDIVVDIIGKMDFPEEDEDV-------- 176 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 L++AV+G+PN GKS+L+N+L G R + +G TRD++ Sbjct: 177 ---------------------LKLAVIGKPNAGKSSLVNKLSGEERTIVSDIAGTTRDAI 215 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 +K++ I DTAG+R+ S++ ESLE +V +++++++ + I++LDA +Q Sbjct: 216 DTLIEYKDNKYMIIDTAGIRRKSKVEESLEYYSVLRALKAIKRADVCILMLDAKEGLTEQ 275 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNL-LQDLRTKAIKNLPQIGDIYINTISGRTG 361 D RI +++ +NKWD+V +K N ++ ++ + LP + I +S TG Sbjct: 276 DKRIAGIAAEELKPIIIVMNKWDLVENKNNATMKKMKEELYAELPFLSYAPIEFVSALTG 335 Query: 362 EGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 + +L+ +I + + RI+T LN+ L+ L N PPT R ++ Y TQ+ +PP Sbjct: 336 QRTTNLLEIANKIYEEYTKRISTGLLNTVLKDAVLMNNPPTRKGRVIKINYATQVSVAPP 395 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 F++FC +P I SY RY+ N+ R F G PI + F++ Sbjct: 396 KFVLFCNYPELIHFSYARYIENKFREAFGFDGSPIMISFEN 436 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 48/178 (26%), Positives = 86/178 (48%), Gaps = 16/178 (8%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + +A++G PN GKS+L N+L ++ +V + G TRD + + I+DTAGI Sbjct: 176 VLKLAVIGKPNAGKSSLVNKLSGEERTIVSDIAGTTRDAIDTLIEYKDNKYMIIDTAGIR 235 Query: 62 DGKNCSIAKQMNDQTEL----AINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIV 117 + + + + + L AI A + + ++D+K G+T D I ++ PIIIV Sbjct: 236 --RKSKVEESLEYYSVLRALKAIKRADVCILMLDAKEGLTEQDKRIAGIAAEELKPIIIV 293 Query: 118 SNKMD----------TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQ 165 NK D ++ + + E+ L + I +SA T+ L + KI+++ Sbjct: 294 MNKWDLVENKNNATMKKMKEELYAELPFLSYAPIEFVSALTGQRTTNLLEIANKIYEE 351 >gi|117620764|ref|YP_856299.1| GTP-binding protein EngA [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|166224301|sp|A0KJ48|DER_AERHH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|117562171|gb|ABK39119.1| GTP-binding protein EngA [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 499 Score = 294 bits (752), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 172/488 (35%), Positives = 264/488 (54%), Gaps = 29/488 (5%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YGQA + + F +VDT GI Sbjct: 1 MTPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGELEFIVVDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG I +M +Q+ LAI EA ++LF++D++AG+T D AI LRK + + +V+NK Sbjct: 61 -DGTEEGIELKMAEQSLLAIEEADVVLFMVDARAGLTAADQAIAEHLRKTHKKVFLVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 D E Y L E+ +++A H G + + + H LE + + Sbjct: 120 TDGIDGDSAVSEFYGLALGEVYQMAAAHGRG-------VLSLLELALAPH-LETLVDAAT 171 Query: 181 NEESPKE-----------NITSEGKSSVKNISK-------PLRIAVVGRPNVGKSTLINR 222 E + E + + G+ K +K P++ A+VGRPNVGKSTL NR Sbjct: 172 QETAQDEEEEDFDEEALLRMVAAGELDTKEDTKETPFADLPIKFAIVGRPNVGKSTLTNR 231 Query: 223 LLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQS 282 +LG +R++ G TRDSV I I DTAG+R+ ++ E++E+ +V K++++ Sbjct: 232 MLGEDRVIVYDMPGTTRDSVYIPMERDEQKYVIIDTAGVRRRGKVHETVEKFSVIKTLKA 291 Query: 283 VRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAI 342 + ++++DA QDL I+ V NTG +VVL +NKWD + K+ +D++ + Sbjct: 292 IEDANVCLLVIDAQETITDQDLSILGFVLNTGRSVVLVVNKWDGLDQKVK--EDVKNELD 349 Query: 343 KNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPT 402 + L I ++ IS G G+ L S+ E + R +T+ L +Q Q + PP Sbjct: 350 RRLGFIDFARVHFISALHGSGVGHLFESIQEAYQSATRRTSTAMLTRIMQMAQEDHQPPM 409 Query: 403 IFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 + R +LKY +PP +I N +P+SYKRYLIN R + + G P+R+ FQ Sbjct: 410 VNGRRVKLKYAHAGGYNPPRIVIHGNQLNDLPDSYKRYLINYFRKSLKIMGTPVRVEFQE 469 Query: 463 SKNPYIKK 470 S NP+ K Sbjct: 470 SANPFEGK 477 >gi|77362053|ref|YP_341627.1| GTP-binding protein EngA [Pseudoalteromonas haloplanktis TAC125] gi|123744148|sp|Q3ICZ9|DER_PSEHT RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|76876964|emb|CAI89181.1| GTP-binding protein, essential for cell growth in E. coli and B. subtilis, regulates ribosome synthesis [Pseudoalteromonas haloplanktis TAC125] Length = 487 Score = 294 bits (752), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 170/474 (35%), Positives = 263/474 (55%), Gaps = 19/474 (4%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ IA+VG PNVGKSTLFNRL + + A+V + PG+TRDR YGQA +G F +VDT GI Sbjct: 1 MLPVIALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQANYDGYEFIVVDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG I +M DQ+ LAI EA ++LFL+D++ G+T D AI + LRK+ +V+NK Sbjct: 61 -DGSEEGIEIEMADQSLLAIEEADIVLFLVDARVGMTVADQAIANHLRKQEKKCFVVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTS-----ELHSVIFKI--FKQKYPNHPLE 173 D A N E Y L EI I+A H G + L +I ++ + N E Sbjct: 120 TDGIDADSNCAEFYQLSLGEIHHIAASHGRGITLLLEQTLQPLIAELAALDEDVSNDDEE 179 Query: 174 MIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGS 233 +I+ + + SE S KP+++A++GRPNVGKSTL NR+LG R++ Sbjct: 180 LIDLYQED---------SEDDSHQAFADKPVKLAIIGRPNVGKSTLTNRILGEERVIVYD 230 Query: 234 QSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLL 293 G TRDS+ I + + DTAG+RK ++++ +E+ +V K++Q++ C ++++ Sbjct: 231 MPGTTRDSIYIPMTRNDKEYILIDTAGVRKRKKVSDVVEKFSVIKTLQAIEDCNVVLLVV 290 Query: 294 DATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYI 353 DA QDL ++ N+G ++V+A+NKWD + D + ++++ + L I + Sbjct: 291 DARAGISDQDLSLLGFALNSGRSLVIAVNKWDGLDDYVK--DRIKSELDRRLGFIDFARL 348 Query: 354 NTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYI 413 + IS G G+ L SV E + RI+T+ L + Q + PP + R +LKY Sbjct: 349 HFISALHGTGVGHLFESVDEAYESATKRISTAMLRRIMDMAQADHQPPLVRGRRVKLKYA 408 Query: 414 TQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 +PP +I + +P+SYKRYL+N R + G PI++ F+ NP+ Sbjct: 409 HAGGYNPPRIVIHGNQVHDLPDSYKRYLMNYYRKALKIMGTPIKIEFREGDNPF 462 >gi|323499818|ref|ZP_08104777.1| GTP-binding protein Der [Vibrio sinaloensis DSM 21326] gi|323315059|gb|EGA68111.1| GTP-binding protein Der [Vibrio sinaloensis DSM 21326] Length = 494 Score = 294 bits (752), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 169/474 (35%), Positives = 264/474 (55%), Gaps = 7/474 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YGQA + F ++DT GI Sbjct: 1 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGEHEFIVIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M Q+ AI+EA ++LF++D +AG+T D AI LRK P ++V NK Sbjct: 61 -DGTEEGVETKMAQQSLAAIDEADVVLFMVDGRAGLTAADEAIAQHLRKLEKPSMLVVNK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN--N 178 +D A E + L + + +I+A H G + L + F +K +E+ Sbjct: 120 VDGIDADAASAEFWQLGVENMYQIAAAHGRGVTALIDLALNPFAEKLLEESKGELEDLTG 179 Query: 179 KRNEESPKENITSEGKSSVKN--ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSG 236 +EE K + T E N +P+++A++GRPNVGKSTL NR+LG R++ G Sbjct: 180 FEDEEQDKLDYTEEEAEQEFNRLQDQPIKLAIIGRPNVGKSTLTNRILGEERVVVYDMPG 239 Query: 237 ITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDAT 296 TRDS+ I + DTAG+R+ +RI E++E+ +V K++++V ++++DA Sbjct: 240 TTRDSIYIPMERDGREYVLIDTAGVRRRTRINETVEKFSVVKTLKAVEDANVVMLVIDAR 299 Query: 297 IPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTI 356 QDL ++ N G ++V+A+NKWD + ++ + ++ + + L + I+ I Sbjct: 300 ENISDQDLSLLGFALNAGRSIVIAVNKWDGLD--TDVKEHVKKELDRRLGFVDFARIHFI 357 Query: 357 SGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQI 416 S G G+ L SV E K TR+ TS L ++ + PP + R +LKY Sbjct: 358 SALHGTGVGHLFESVQEAYKSATTRVGTSVLTRIMKMATDDHQPPMVRGRRVKLKYAHAG 417 Query: 417 QSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I N++P+SYKRYL+N R + + G PIR+ FQSS NP+ K Sbjct: 418 GYNPPIVVIHGNQVNELPDSYKRYLMNYYRKSLEIMGTPIRIIFQSSDNPFEGK 471 >gi|254302562|ref|ZP_04969920.1| possible GTPase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148322754|gb|EDK88004.1| possible GTPase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 440 Score = 294 bits (752), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 160/461 (34%), Positives = 257/461 (55%), Gaps = 32/461 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFN LV K+A+V + PG+TRDRLY +G F IVDT G+ Sbjct: 5 VAIVGRPNVGKSTLFNNLVGDKIAIVDDLPGVTRDRLYRDTEWSGSEFVIVDTGGLEPRN 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N + ++ +Q E+A+NEA +ILF++D K+G+ P D I LRKKN P+I+ NK+D Sbjct: 65 NDFLMAKIKEQAEVAMNEADVILFVVDGKSGLNPLDDEIAYILRKKNKPVILCVNKIDNF 124 Query: 125 IAQR-NFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF-KQKYPNHPLEMIENNKRNE 182 Q+ + Y+ Y L F+ +V IS EH + ++ ++ I K +P E+ Sbjct: 125 FEQQDDVYDFYGLGFEYLVPISGEHKVNLGDMLDIVVDIIGKMDFPEEDEEV-------- 176 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 L++AV+G+PN GKS+L+N+L G R + +G TRD++ Sbjct: 177 ---------------------LKLAVIGKPNAGKSSLVNKLSGEERTIVSDIAGTTRDAI 215 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 +K++ I DTAG+R+ S++ ESLE +V +++++++ + I++LDA +Q Sbjct: 216 DTLIEYKDNKYMIIDTAGIRRKSKVEESLEYYSVLRALKAIKRADVCILMLDAKEGLTEQ 275 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLN-LLQDLRTKAIKNLPQIGDIYINTISGRTG 361 D RI +++ +NKWD++ +K N ++ ++ + LP + I +S TG Sbjct: 276 DKRIAGIAHEELKPIIIVMNKWDLIENKNNTTMKKMKEELYAELPFLSYAPIEFVSALTG 335 Query: 362 EGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 + +L+ I + + RI+T LN+ L+ L N PPT R ++ Y TQ+ +PP Sbjct: 336 QRTTNLLEISDRIYEEYTKRISTGLLNTILKDAVLMNNPPTRKGRVIKINYATQVSVAPP 395 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 F++FC +P I SY RY+ N+ R F G PI + F++ Sbjct: 396 RFVLFCNYPELIHFSYARYIENKFREAFGFDGSPIMISFEN 436 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 65/125 (52%), Gaps = 6/125 (4%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + +A++G PN GKS+L N+L ++ +V + G TRD + + I+DTAGI Sbjct: 176 VLKLAVIGKPNAGKSSLVNKLSGEERTIVSDIAGTTRDAIDTLIEYKDNKYMIIDTAGIR 235 Query: 62 DGKNCSIAKQMNDQTEL----AINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIV 117 + + + + + L AI A + + ++D+K G+T D I ++ PIIIV Sbjct: 236 --RKSKVEESLEYYSVLRALKAIKRADVCILMLDAKEGLTEQDKRIAGIAHEELKPIIIV 293 Query: 118 SNKMD 122 NK D Sbjct: 294 MNKWD 298 >gi|260776629|ref|ZP_05885524.1| GTP-binding protein EngA [Vibrio coralliilyticus ATCC BAA-450] gi|260607852|gb|EEX34117.1| GTP-binding protein EngA [Vibrio coralliilyticus ATCC BAA-450] Length = 495 Score = 293 bits (751), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 168/474 (35%), Positives = 270/474 (56%), Gaps = 7/474 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YGQA + F ++DT GI Sbjct: 1 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGEHEFIVIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ AI+EA ++LF++D +AG+TP D AI++ LRK P ++V NK Sbjct: 61 -DGTEEGVETKMAEQSLAAIDEADVVLFMVDGRAGLTPSDIAISNHLRKIEKPSMLVVNK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN--N 178 +D A + + L + + +I+A H G L F +K IE+ + Sbjct: 120 VDGIDADAASADFWQLGVESMYQIAAAHGRGVGALIDRALNPFAEKMAEEARGEIEDLTD 179 Query: 179 KRNEESPKENITSE-GKSSVKNI-SKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSG 236 +E+ K + T E ++ K + +P+++A++GRPNVGKSTL NR+LG R++ G Sbjct: 180 FIDEDEEKLDYTEEEAEAEFKRLQDQPIKLAIIGRPNVGKSTLTNRILGEERVVVYDMPG 239 Query: 237 ITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDAT 296 TRDS+ I + DTAG+R+ RI E++E+ +V K++++V ++++DA Sbjct: 240 TTRDSIYIPMERDGREYVLIDTAGVRRRKRINETVEKFSVVKTLKAVEDANVVLLVIDAR 299 Query: 297 IPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTI 356 QDL ++ N G ++V+A+NKWD + +++ + ++ + + L + I+ I Sbjct: 300 ENISDQDLSLLGFALNAGRSIVIAVNKWDGLD--MDVKEHVKKELDRRLGFVDFARIHFI 357 Query: 357 SGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQI 416 S G G+ L SV E K TR+ TS L ++ + PP + R +LKY Sbjct: 358 SALHGTGVGHLFESVQEAYKSATTRVGTSVLTRIMKMATEDHQPPLVRGRRVKLKYAHAG 417 Query: 417 QSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I N++P+SYKRYL+N R + + G PIR+ FQ+S NP+ K Sbjct: 418 GYNPPIVVIHGNQVNELPDSYKRYLMNYYRKSLEIMGTPIRIQFQNSDNPFEGK 471 >gi|260496851|ref|ZP_05815971.1| ribosome-associated GTPase EngA [Fusobacterium sp. 3_1_33] gi|260196593|gb|EEW94120.1| ribosome-associated GTPase EngA [Fusobacterium sp. 3_1_33] Length = 440 Score = 293 bits (751), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 160/461 (34%), Positives = 257/461 (55%), Gaps = 32/461 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFN LV K+A+V + PG+TRDRLY +G F IVDT G+ Sbjct: 5 VAIVGRPNVGKSTLFNNLVGDKIAIVDDLPGVTRDRLYRDTEWSGSEFVIVDTGGLEPRN 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N + ++ +Q E+A+NEA +ILF++D K+G+ P D I LRKKN P+I+ NK+D Sbjct: 65 NDFLMAKIKEQAEVAMNEADVILFVVDGKSGLNPLDEEIAYILRKKNKPVILCVNKIDNF 124 Query: 125 IAQR-NFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF-KQKYPNHPLEMIENNKRNE 182 Q+ + Y+ Y L F+ +V IS EH + ++ ++ I K +P ++ Sbjct: 125 FEQQDDVYDFYGLGFEYLVPISGEHKVNLGDMLDIVVDIIGKMDFPEEDEDV-------- 176 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 L++AV+G+PN GKS+L+N+L G R + +G TRD++ Sbjct: 177 ---------------------LKLAVIGKPNAGKSSLVNKLSGEERTIVSDIAGTTRDAI 215 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 +K++ I DTAG+R+ S++ ESLE +V +++++++ + I++LDA +Q Sbjct: 216 DTLIEYKDNKYMIIDTAGIRRKSKVEESLEYYSVLRALKAIKRADVCILMLDAKEGLTEQ 275 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNL-LQDLRTKAIKNLPQIGDIYINTISGRTG 361 D RI +++ +NKWD+V +K N ++ ++ + LP + I +S TG Sbjct: 276 DKRIAGIAAEELKPIIIVMNKWDLVENKNNATMKKMKEELYAELPFLSYAPIEFVSALTG 335 Query: 362 EGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 + +L+ I + + RI+T LN+ L+ L N PPT R ++ Y TQ+ +PP Sbjct: 336 QRTTNLLEISNRIYEEYTKRISTGLLNTVLKDAVLMNNPPTRKGRVIKINYATQVSVAPP 395 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 F++FC +P I SY RY+ N+ R F G PI + F++ Sbjct: 396 KFVLFCNYPELIHFSYARYIENKFREAFGFDGSPIMISFEN 436 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 65/125 (52%), Gaps = 6/125 (4%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + +A++G PN GKS+L N+L ++ +V + G TRD + + I+DTAGI Sbjct: 176 VLKLAVIGKPNAGKSSLVNKLSGEERTIVSDIAGTTRDAIDTLIEYKDNKYMIIDTAGIR 235 Query: 62 DGKNCSIAKQMNDQTEL----AINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIV 117 + + + + + L AI A + + ++D+K G+T D I ++ PIIIV Sbjct: 236 --RKSKVEESLEYYSVLRALKAIKRADVCILMLDAKEGLTEQDKRIAGIAAEELKPIIIV 293 Query: 118 SNKMD 122 NK D Sbjct: 294 MNKWD 298 >gi|221133872|ref|ZP_03560177.1| GTP-binding protein EngA [Glaciecola sp. HTCC2999] Length = 481 Score = 293 bits (750), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 161/470 (34%), Positives = 266/470 (56%), Gaps = 11/470 (2%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + A+V + PG+TRDR YGQA + F ++DT GI Sbjct: 1 MLPVLALVGRPNVGKSTLFNRLTNTRDALVADFPGLTRDRKYGQAKVEDRQFIVIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 G I M +Q+ LAI+EA ++LFL+D++AG+T D I +LRK+ + +V+NK Sbjct: 61 T-GDEAGIDAAMAEQSLLAIDEADVVLFLVDARAGLTAADQGIAEYLRKQEKTVYVVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D + Y+L + +I+A H G ++L + + +P+ E N Sbjct: 120 VDGIDGDSESADFYALGMGNVQQIAAAHGRGVAQLLDLTLSPLAENFPDMIAVEPERNDD 179 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 +E++ K+ ++N+ P+++AVVG+PNVGKSTL NR+LG R++ Q G TRD Sbjct: 180 DEDAEKQ------LERLQNL--PIKLAVVGKPNVGKSTLTNRILGEERVVVYDQPGTTRD 231 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ I + DTAG+RK +I E++E+ ++ K++Q++ ++++DA Sbjct: 232 SIFIPMERDEREYILIDTAGVRKRRKINEAVEKFSIVKTLQAIEEANVVLLVIDAREGIS 291 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 QDL ++ + N G ++VLA+NKWD + + ++ +++ + + L + ++ IS Sbjct: 292 DQDLSLLGFILNAGRSLVLAVNKWDGL--QAHVKDEIKRELDRRLGFVDFARLHFISALH 349 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G G+ L SV E + RI TS L ++ Q + PP + +R ++KY +P Sbjct: 350 GTGVGHLFESVQEAYESATRRINTSMLTRIMEMAQEDHNPPLVRSRRVKMKYAHAGGYNP 409 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 P +I + +P+SYKRYL+N R + + G PIR+ F+ NP+ K Sbjct: 410 PVVVIHGNQVDDLPDSYKRYLMNYYRKSLKVMGTPIRIEFREGANPFEGK 459 >gi|268318173|ref|YP_003291892.1| small GTP-binding protein [Rhodothermus marinus DSM 4252] gi|262335707|gb|ACY49504.1| small GTP-binding protein [Rhodothermus marinus DSM 4252] Length = 434 Score = 293 bits (749), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 161/458 (35%), Positives = 244/458 (53%), Gaps = 28/458 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST FNRL + A+ + PG+TRDR+YG A NGV F++VDT G Sbjct: 4 VAIVGRPNVGKSTFFNRLTRSHEAITHDQPGVTRDRVYGTAEWNGVRFSVVDTGGYVPNS 63 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + + +Q ++AI EA ILF++D G+T D A+ LR+ + P+ +V+NK D Sbjct: 64 SDIFEQAIREQVQIAIEEADAILFMVDVTTGVTDLDDALAELLRRTDKPVFVVANKADND 123 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 Y L E+ ISA GT EL + K + P RN E+ Sbjct: 124 ERTWEASTFYQLGLSEVYPISALSGRGTGELLDALVK----RLP----------ARNGEA 169 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 + +P R+A+VGRPNVGKS+L N LLG R + SG TRD+V Sbjct: 170 ESDE-------------RP-RLAIVGRPNVGKSSLTNALLGQERSIVTDISGTTRDAVHS 215 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + I + DTAG+R+ SRI E++E ++ +++R C+ I L+DAT QD+ Sbjct: 216 VLKYYGREIVLVDTAGLRRRSRIRENIEFYATLRTERALRECDVAITLIDATEGLTAQDI 275 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 RI+ +VL +NKWD++ N +++ LP + + IS +T + + Sbjct: 276 RILRQAEELRKGMVLVVNKWDLIEKDANTMKEWEEAIRYRLPTWQHVPLVFISAKTRQRI 335 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 ++ + L + + + RI TS LN LQ+ Q PPT R ++KY+TQ++++PP F Sbjct: 336 HRVLEAALRVYENRRQRIATSQLNEVLQEAIRQQHPPTYRGRPVKIKYVTQVETAPPVFA 395 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 FC +P I E Y+RYL ++R F G+P+ + F+ Sbjct: 396 FFCNYPEGIKEPYRRYLEKQIRAAFGFEGVPLTLVFRE 433 >gi|188533178|ref|YP_001906975.1| GTP-binding protein EngA [Erwinia tasmaniensis Et1/99] gi|238689730|sp|B2VE93|DER_ERWT9 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|188028220|emb|CAO96078.1| GTP-binding protein [Erwinia tasmaniensis Et1/99] Length = 499 Score = 292 bits (748), Expect = 6e-77, Method: Compositional matrix adjust. Identities = 171/478 (35%), Positives = 262/478 (54%), Gaps = 11/478 (2%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A I G F +DT GI Sbjct: 1 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ LAI EA ++LF++D++AG+ P D AI LR + P +V+NK Sbjct: 61 -DGNEEGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADTAIAKHLRSRQKPTFLVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLG-TSELHSVIFKIFKQKYPNHPLEMIENNK 179 D A + +SL EI I+A H G TS L V+ + P L E N Sbjct: 120 TDGLDADSAVVDFWSLGLGEIHPIAASHGRGVTSLLELVLLPWMDEVVPQRELTEEEENA 179 Query: 180 R--NEESPKE-----NITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTG 232 E + KE T++ + + P+++A+VGRPNVGKSTL NR+LG +R++ Sbjct: 180 AYWAELAAKEAKVNGEATADEEDDFNPLDLPIKLAIVGRPNVGKSTLTNRILGEDRVVVF 239 Query: 233 SQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVL 292 G TRDS+ I + DTAG+RK ++TE++E+ +V K++Q++ +++ Sbjct: 240 DMPGTTRDSIYIPMERDGREYILIDTAGVRKRGKVTETVEKFSVIKTLQAIEDANVVMLV 299 Query: 293 LDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIY 352 +DA QDL ++ + N+G ++V+ +NKWD +S ++ +++ L I Sbjct: 300 IDAHEGISDQDLSLLGFILNSGRSLVIVVNKWDGLSQEVR--DEVKEALDYRLGFIDFAR 357 Query: 353 INTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKY 412 I+ IS G G+ +L SV E R+ TS L + + PP + +R +LKY Sbjct: 358 IHFISALHGSGVGNLFESVTEAYDCSTRRVNTSMLTRIMHMAADDHQPPLVRSRRVKLKY 417 Query: 413 ITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I +P+SYKRYL+N R + + G PIR+ F+ NPY K Sbjct: 418 AHAGGYNPPIVVIHGNQVKDLPDSYKRYLMNYFRRSLDIMGTPIRIQFKEGDNPYEGK 475 >gi|161486654|ref|NP_933563.2| GTP-binding protein EngA [Vibrio vulnificus YJ016] gi|41016999|sp|Q7MNE7|DER_VIBVY RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA Length = 496 Score = 292 bits (748), Expect = 7e-77, Method: Compositional matrix adjust. Identities = 165/472 (34%), Positives = 269/472 (56%), Gaps = 8/472 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YGQA + F ++DT GI Sbjct: 1 MIPVVALVGRPNVGKSTLFNRLTRSRDALVADFPGLTRDRKYGQAKVGEHDFIVIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ AI EA ++LF++D +AG+TP D AI + LRK ++V NK Sbjct: 61 -DGSEEGVETKMAEQSLAAIREADVVLFMVDGRAGLTPSDEAIAAHLRKIEKATMLVVNK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL-HSVIFKIFKQKYPNHPLEMIEN-- 177 +D A + + L E+ +I+A H G + L + F + IE+ Sbjct: 120 VDGIDADAASADFWQLGVDEMYQIAAAHGRGVTALIERALDPFFDNLLSTNSEGEIEDLT 179 Query: 178 NKRNEESPKENITSE-GKSSVKNI-SKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQS 235 N +EE+ ++ + E + S+K + +P+++A++GRPNVGKSTL NR+LG R++ Sbjct: 180 NMEDEEAEQQEYSEEDAEESLKRLQDQPIKLAIIGRPNVGKSTLTNRILGEERVVVYDMP 239 Query: 236 GITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDA 295 G TRDS+ I + DTAG+R+ ++ E++E+ +V K++++V ++++DA Sbjct: 240 GTTRDSIYIPMERDGREYVLIDTAGVRRRGKVHETVEKFSVVKTLKAVEDANVVLLVIDA 299 Query: 296 TIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINT 355 QDL ++ N G ++VLA+NKWD + +++ ++++ + + L + I+ Sbjct: 300 RENISDQDLSLLGFALNAGRSIVLAVNKWDGLDNEVK--ENVKKELDRRLGFVDFARIHF 357 Query: 356 ISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQ 415 IS G G+ L SV E + TR+ TS L ++ + PP + R +LKY Sbjct: 358 ISALHGTGVGHLFESVQEAYRSATTRVGTSVLTRIMKMATEDHQPPMVRGRRVKLKYAHA 417 Query: 416 IQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 +PP +I ++P+SYKRYL+N R + + G PIR+ FQ+S NP+ Sbjct: 418 GGYNPPIVVIHGNQVRELPDSYKRYLMNYFRKSLDIMGTPIRIQFQNSDNPF 469 >gi|54307962|ref|YP_128982.1| GTP-binding protein EngA [Photobacterium profundum SS9] gi|81828838|sp|Q6LU45|DER_PHOPR RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|46912388|emb|CAG19180.1| putative GTP-binding protein [Photobacterium profundum SS9] Length = 493 Score = 292 bits (748), Expect = 8e-77, Method: Compositional matrix adjust. Identities = 165/469 (35%), Positives = 268/469 (57%), Gaps = 5/469 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A + F ++DT GI Sbjct: 1 MIPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAELEEHEFIVIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ AI EA ++LFL+D +AG+T D AI LR ++ P +V NK Sbjct: 61 -DGTEEGVETKMAEQSLAAIEEADVVLFLVDGRAGLTVSDEAIAKHLRSRDKPTFLVVNK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D A E + L + +++A H+ G + L F + + E + + Sbjct: 120 IDGIDADSACAEFWKLGVDAMYQVAAAHNRGVTALMERALAPFAESLKGNDEEGLIDLSS 179 Query: 181 NEESPKENITSE-GKSSVKNI-SKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 E+ K ++T E +++ K + +P+++A++GRPNVGKSTL NR+LG R++ G T Sbjct: 180 VEDIEKADLTEEDAEAAYKRLQEQPIKLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTT 239 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RDS+ I + DTAG+R+ + + +E+ +V +++++V ++++DA Sbjct: 240 RDSIYIPMERDGQEYVLIDTAGVRRRKNMNQVVEKFSVIQTLKAVEDANVVLLIIDAREN 299 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 QDL ++ V N+G ++VLA+NKWD + +++ + ++++ + L I I+ IS Sbjct: 300 ISDQDLSLLGFVLNSGRSLVLAVNKWDGLDNEVK--ERVKSELDRRLGFIDFARIHFISA 357 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 G G+ L SV+E K RI+TS L +Q Q + PP + R +LKY Sbjct: 358 LHGTGVGHLYDSVIEAYKSATKRISTSLLTRIMQMAQDDHQPPMVRGRRVKLKYAHAGGY 417 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 +PP +I N +P SYKRYL+N R + + G PIR+ FQ+S+NP+ Sbjct: 418 NPPIIVIHGNQVNDLPASYKRYLMNYYRRSLEMMGTPIRIQFQNSENPF 466 >gi|90410877|ref|ZP_01218891.1| GTP-binding protein EngA [Photobacterium profundum 3TCK] gi|90328090|gb|EAS44401.1| GTP-binding protein EngA [Photobacterium profundum 3TCK] Length = 493 Score = 292 bits (748), Expect = 8e-77, Method: Compositional matrix adjust. Identities = 164/469 (34%), Positives = 270/469 (57%), Gaps = 5/469 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A + F ++DT GI Sbjct: 1 MIPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAELEEHEFIVIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ AI EA ++LFL+D +AG+T D AI LR + P +V NK Sbjct: 61 -DGTEEGVETKMAEQSLAAIEEADVVLFLVDGRAGLTVSDEAIAKHLRSREKPTFLVVNK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D A E + L + +++A H+ G + L F + ++ E + + Sbjct: 120 IDGIDADSACAEFWKLGVDAMYQVAAAHNRGVTALMERALAPFAESLKDNDEEGLIDLTS 179 Query: 181 NEESPKENITSE-GKSSVKNI-SKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 E+ K ++T E +++ K + +P+++A++GRPNVGKSTL NR+LG R++ G T Sbjct: 180 VEDIEKADLTEEDAEAAYKRLQEQPIKLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTT 239 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RDS+ I + DTAG+R+ + +++E+ +V +++++V ++++DA Sbjct: 240 RDSIYIPMERDGQEYVLIDTAGVRRRKNMNQAVEKFSVIQTLKAVEDANVVLLIIDAREN 299 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 QDL ++ V N+G ++VLA+NKWD + +++ + ++++ + L I I+ IS Sbjct: 300 ISDQDLSLLGFVLNSGRSLVLAVNKWDGLDNEVK--ERVKSELDRRLGFIDFARIHFISA 357 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 G G+ L SV+E + RI+TS L +Q Q + PP + R +LKY Sbjct: 358 LHGTGVGHLYDSVIEAYQSATKRISTSLLTRIMQMAQDDHQPPMVRGRRVKLKYAHAGGY 417 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 +PP +I N++P SYKRYL+N R + + G PIR+ FQ+S+NP+ Sbjct: 418 NPPIIVIHGNQVNELPASYKRYLMNYYRRSLEMMGTPIRIQFQNSENPF 466 >gi|85712733|ref|ZP_01043778.1| GTP-binding protein EngA [Idiomarina baltica OS145] gi|85693465|gb|EAQ31418.1| GTP-binding protein EngA [Idiomarina baltica OS145] Length = 479 Score = 292 bits (747), Expect = 8e-77, Method: Compositional matrix adjust. Identities = 169/474 (35%), Positives = 257/474 (54%), Gaps = 22/474 (4%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YGQA +G F +VDT GI Sbjct: 1 MLPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQANYDGYQFIVVDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 G I + M Q+ AI EA ++LFL+D++ G+T D AI + LRK+ + +V+NK Sbjct: 61 H-GDEEGIDEVMAKQSLQAIEEADVVLFLVDARDGVTVGDQAIATHLRKQKKKVYLVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D A + YSL + I+A H G L FK YP+ ++ + Sbjct: 120 IDGIDADSAMADFYSLALGNLYGIAAAHGRGVEHLLDSCFKPLADDYPD---VIVPDEPD 176 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 +E+ + I + + PL++A+VGRPNVGKSTL NR+LG +R++ G TRD Sbjct: 177 SEDLEHDEIDYD--------ALPLKLAIVGRPNVGKSTLTNRILGEDRVVVFDMPGTTRD 228 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 SV I + DTAG+R+ RI E++E+ +V K++Q++ + ++DA Sbjct: 229 SVYIPMERDGREYVLIDTAGVRRRGRIDEAIEKYSVVKTLQAIEDANVVLAVIDARETIS 288 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQ----IGDIYINTI 356 QDL ++ N G ++V+A+NKWD L QD + + + L + + ++ I Sbjct: 289 DQDLNLIGFALNAGRSIVIAVNKWD------GLQQDHKDEIKRELDRRLGFVDFARLHFI 342 Query: 357 SGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQI 416 S G G+ L SV E K R++TS L ++ Q ++ PP + R +LKY Sbjct: 343 SALHGTGVGHLFESVEEAYKSATQRVSTSKLTKIMEMAQEEHQPPLVGGRRVKLKYAHAG 402 Query: 417 QSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I ++P SY+RYL N R + G PI++ F+ KNPY K Sbjct: 403 GYNPPRIVIHGNQVTRLPGSYQRYLTNYFRKALGVMGTPIKVEFREPKNPYAGK 456 >gi|34762556|ref|ZP_00143552.1| GTP-binding protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887777|gb|EAA24850.1| GTP-binding protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 440 Score = 292 bits (747), Expect = 8e-77, Method: Compositional matrix adjust. Identities = 159/461 (34%), Positives = 257/461 (55%), Gaps = 32/461 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFN LV K+A+V + PG+TRDRLY + F IVDT G+ Sbjct: 5 VAIVGRPNVGKSTLFNNLVGDKIAIVDDLPGVTRDRLYRDTEWSSSEFVIVDTGGLEPRN 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N + ++ +Q E+A+NEA +ILF++D K+G+ P D I LRKKN P+I+ NK+D Sbjct: 65 NDFLMAKIKEQAEVAMNEADVILFVVDGKSGLNPLDEEIAYILRKKNKPVILCVNKIDNF 124 Query: 125 IAQR-NFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF-KQKYPNHPLEMIENNKRNE 182 Q+ + Y+ Y L F+ +V IS EH + ++ ++ +I K +P ++ Sbjct: 125 FEQQDDVYDFYGLGFEYLVPISGEHKVNLGDMLDIVVEIIGKMDFPEEDEDV-------- 176 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 L++AV+G+PN GKS+L+N+L G R + +G TRD++ Sbjct: 177 ---------------------LKLAVIGKPNAGKSSLVNKLSGEERTIVSDIAGTTRDAI 215 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 +K++ I DTAG+R+ S++ ESLE +V +++++++ + I++LDA +Q Sbjct: 216 DTLIEYKDNKYMIIDTAGIRRKSKVEESLEYYSVLRALKAIKRADVCILMLDAKEGLTEQ 275 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNL-LQDLRTKAIKNLPQIGDIYINTISGRTG 361 D RI +++ +NKWD+V +K N ++ ++ + LP + I +S TG Sbjct: 276 DKRIAGIAAEELKPIIIVMNKWDLVENKNNATMKKMKEELYAELPFLSYAPIEFVSALTG 335 Query: 362 EGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 + +L+ I + + RI+T LN+ L+ L N PPT R ++ Y TQ+ +PP Sbjct: 336 QRTTNLLEIANRIYEEYTKRISTGLLNTVLKDAVLMNNPPTRKGRVIKINYATQVSVAPP 395 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 F++FC +P I SY RY+ N+ R F G PI + F++ Sbjct: 396 KFVLFCNYPELIHFSYARYIENKFREAFGFDGSPIMISFEN 436 Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 47/178 (26%), Positives = 86/178 (48%), Gaps = 16/178 (8%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + +A++G PN GKS+L N+L ++ +V + G TRD + + I+DTAGI Sbjct: 176 VLKLAVIGKPNAGKSSLVNKLSGEERTIVSDIAGTTRDAIDTLIEYKDNKYMIIDTAGIR 235 Query: 62 DGKNCSIAKQMNDQTEL----AINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIV 117 + + + + + L AI A + + ++D+K G+T D I ++ PIIIV Sbjct: 236 --RKSKVEESLEYYSVLRALKAIKRADVCILMLDAKEGLTEQDKRIAGIAAEELKPIIIV 293 Query: 118 SNKMD----------TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQ 165 NK D ++ + + E+ L + I +SA T+ L + +I+++ Sbjct: 294 MNKWDLVENKNNATMKKMKEELYAELPFLSYAPIEFVSALTGQRTTNLLEIANRIYEE 351 >gi|320157270|ref|YP_004189649.1| GTP-binding protein EngA [Vibrio vulnificus MO6-24/O] gi|319932582|gb|ADV87446.1| GTP-binding protein EngA [Vibrio vulnificus MO6-24/O] Length = 496 Score = 292 bits (747), Expect = 9e-77, Method: Compositional matrix adjust. Identities = 165/472 (34%), Positives = 269/472 (56%), Gaps = 8/472 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YGQA + F ++DT GI Sbjct: 1 MIPVVALVGRPNVGKSTLFNRLTRSRDALVADFPGLTRDRKYGQAKVGEHDFIVIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ AI EA ++LF++D +AG+TP D AI + LRK ++V NK Sbjct: 61 -DGSEEGVETKMAEQSLAAIREADVVLFMVDGRAGLTPSDEAIAAHLRKIEKATMLVVNK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL-HSVIFKIFKQKYPNHPLEMIEN-- 177 +D A + + L E+ +I+A H G + L + F + IE+ Sbjct: 120 VDGIDADAASADFWQLGVDEMYQIAAAHGRGVTALIERALDPFFDNLLSANSEGEIEDLT 179 Query: 178 NKRNEESPKENITSE-GKSSVKNI-SKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQS 235 N +EE+ ++ + E + S+K + +P+++A++GRPNVGKSTL NR+LG R++ Sbjct: 180 NMEDEEAEQQEYSEEDAEESLKRLQDQPIKLAIIGRPNVGKSTLTNRILGEERVVVYDMP 239 Query: 236 GITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDA 295 G TRDS+ I + DTAG+R+ ++ E++E+ +V K++++V ++++DA Sbjct: 240 GTTRDSIYIPMERDGREYVLIDTAGVRRRGKVHETVEKFSVVKTLKAVEDANVVLLVIDA 299 Query: 296 TIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINT 355 QDL ++ N G ++VLA+NKWD + +++ ++++ + + L + I+ Sbjct: 300 RENISDQDLSLLGFALNAGRSIVLAVNKWDGLDNEVK--ENVKKELDRRLGFVDFARIHF 357 Query: 356 ISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQ 415 IS G G+ L SV E + TR+ TS L ++ + PP + R +LKY Sbjct: 358 ISALHGTGVGHLFESVQEAYRSATTRVGTSVLTRIMKMATEDHQPPMVRGRRVKLKYAHA 417 Query: 416 IQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 +PP +I ++P+SYKRYL+N R + + G PIR+ FQ+S NP+ Sbjct: 418 GGYNPPIVVIHGNQVRELPDSYKRYLMNYFRKSLDIMGTPIRIQFQNSDNPF 469 >gi|37197696|dbj|BAC93534.1| predicted GTP-binding protein [Vibrio vulnificus YJ016] Length = 511 Score = 292 bits (747), Expect = 9e-77, Method: Compositional matrix adjust. Identities = 165/472 (34%), Positives = 269/472 (56%), Gaps = 8/472 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YGQA + F ++DT GI Sbjct: 16 MIPVVALVGRPNVGKSTLFNRLTRSRDALVADFPGLTRDRKYGQAKVGEHDFIVIDTGGI 75 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ AI EA ++LF++D +AG+TP D AI + LRK ++V NK Sbjct: 76 -DGSEEGVETKMAEQSLAAIREADVVLFMVDGRAGLTPSDEAIAAHLRKIEKATMLVVNK 134 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL-HSVIFKIFKQKYPNHPLEMIEN-- 177 +D A + + L E+ +I+A H G + L + F + IE+ Sbjct: 135 VDGIDADAASADFWQLGVDEMYQIAAAHGRGVTALIERALDPFFDNLLSTNSEGEIEDLT 194 Query: 178 NKRNEESPKENITSE-GKSSVKNI-SKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQS 235 N +EE+ ++ + E + S+K + +P+++A++GRPNVGKSTL NR+LG R++ Sbjct: 195 NMEDEEAEQQEYSEEDAEESLKRLQDQPIKLAIIGRPNVGKSTLTNRILGEERVVVYDMP 254 Query: 236 GITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDA 295 G TRDS+ I + DTAG+R+ ++ E++E+ +V K++++V ++++DA Sbjct: 255 GTTRDSIYIPMERDGREYVLIDTAGVRRRGKVHETVEKFSVVKTLKAVEDANVVLLVIDA 314 Query: 296 TIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINT 355 QDL ++ N G ++VLA+NKWD + +++ ++++ + + L + I+ Sbjct: 315 RENISDQDLSLLGFALNAGRSIVLAVNKWDGLDNEVK--ENVKKELDRRLGFVDFARIHF 372 Query: 356 ISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQ 415 IS G G+ L SV E + TR+ TS L ++ + PP + R +LKY Sbjct: 373 ISALHGTGVGHLFESVQEAYRSATTRVGTSVLTRIMKMATEDHQPPMVRGRRVKLKYAHA 432 Query: 416 IQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 +PP +I ++P+SYKRYL+N R + + G PIR+ FQ+S NP+ Sbjct: 433 GGYNPPIVVIHGNQVRELPDSYKRYLMNYFRKSLDIMGTPIRIQFQNSDNPF 484 >gi|156932946|ref|YP_001436862.1| GTP-binding protein EngA [Cronobacter sakazakii ATCC BAA-894] gi|166198713|sp|A7MGU7|DER_ENTS8 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|156531200|gb|ABU76026.1| hypothetical protein ESA_00749 [Cronobacter sakazakii ATCC BAA-894] Length = 492 Score = 291 bits (746), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 164/472 (34%), Positives = 260/472 (55%), Gaps = 5/472 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A + G F +DT GI Sbjct: 1 MIPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ LAI EA ++LF++D++AG+ P D AI LR + P +V+NK Sbjct: 61 -DGSEEGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSRQKPTFLVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL--HSVIFKIFKQKYPNHPLEMIENN 178 D + + YSL EI I+A H G + L H ++ + P E E Sbjct: 120 TDGLDPDQAVSDFYSLGLGEIHPIAASHGRGVTSLLEHVLVPWMDDVDPPEEVDEEAEYW 179 Query: 179 KRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 + E + E + P+++A+VGRPNVGKSTL NR+LG +R++ G T Sbjct: 180 AQFEAEQNGELVEEEEDDFNPQDLPIKLAIVGRPNVGKSTLTNRILGEDRVVVFDMPGTT 239 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RDS+ I + DTAG+RK +IT+ +E+ +V K++Q++ ++++DA Sbjct: 240 RDSIYIPMERDGREFVLIDTAGVRKRGKITDVVEKFSVIKTLQAIEDANVVLLVIDAREG 299 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 QDL ++ + N+G ++V+ +NKWD +S ++ ++++ L I ++ IS Sbjct: 300 ISDQDLSLLGFILNSGRSLVIVVNKWDGLSQEVK--EEVKETLDYRLGFIDFARVHFISA 357 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 G G+ +L SV E R++T+ L ++ + + PP + R +LKY Sbjct: 358 LHGSGVGNLFESVREAYDSSTRRVSTALLTRIMKMAEEDHQPPMVRGRRVKLKYAHAGGY 417 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I T +P+SYKRYL+N R + + G PIR+ F+ NP+ K Sbjct: 418 NPPIVVIHGTQVKDLPDSYKRYLMNYFRKSLDVMGTPIRIQFKEGANPFANK 469 >gi|237737857|ref|ZP_04568338.1| GTP-binding protein [Fusobacterium mortiferum ATCC 9817] gi|229419737|gb|EEO34784.1| GTP-binding protein [Fusobacterium mortiferum ATCC 9817] Length = 440 Score = 291 bits (746), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 157/458 (34%), Positives = 252/458 (55%), Gaps = 29/458 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFN LV ++A+V + PG+TRDRLY + NG F +VDT G+ Sbjct: 5 VAIVGRPNVGKSTLFNNLVGDRVAIVDDMPGVTRDRLYRETEWNGTEFVVVDTGGLEPRN 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N + ++ Q E+A+NEA +ILF++D K G+ P D I LRKKN PII+ NK+D Sbjct: 65 NDFMMTKIKQQAEVAMNEADVILFVVDGKCGVNPLDEEIAYILRKKNKPIILCVNKIDNF 124 Query: 125 IAQRN-FYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + Q++ Y+ ++L F+ ++ IS H + ++ L+M+ + + + Sbjct: 125 LEQQDDVYDFWALGFEHLIPISGGHKVNLGDM----------------LDMVTDMIKKID 168 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 P+E L++A++G+PN GKS+L+NRL G R + +G TRD++ Sbjct: 169 IPEEE------------EDVLKLAIIGKPNAGKSSLVNRLAGEERTIVSDIAGTTRDAID 216 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + I DTAG+R+ S++ ESLE +V +++++++ + +++LD +QD Sbjct: 217 TIVEFDEKKYMIIDTAGIRRKSKVEESLEYYSVLRAIKTIKRADVCLLMLDGKEGLSEQD 276 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 RI +++ +NKWD+V K N ++ +R K LP + I +S TG+ Sbjct: 277 KRIAGIAAEELKPIIVVVNKWDLVDKKSNTMEKMREKLYAELPFLSYAPIEFVSALTGQR 336 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 L+ I + + RI+T LN+ L++ L N PPT R ++ Y TQ+ +PP F Sbjct: 337 TTKLLEIADTIFEEYNKRISTGILNTVLKEAVLMNNPPTRKGRVVKINYATQVSVAPPRF 396 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 +FC +P I SY RY+ N+ R F G PI + F+ Sbjct: 397 ALFCNYPELIHFSYARYIENKFREAFGFDGSPILISFE 434 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 48/177 (27%), Positives = 86/177 (48%), Gaps = 15/177 (8%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + +AI+G PN GKS+L NRL ++ +V + G TRD + + + I+DTAGI Sbjct: 176 VLKLAIIGKPNAGKSSLVNRLAGEERTIVSDIAGTTRDAIDTIVEFDEKKYMIIDTAGIR 235 Query: 62 DGKNCSIAKQMNDQTEL----AINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIV 117 + + + + + L I A + L ++D K G++ D I ++ PII+V Sbjct: 236 --RKSKVEESLEYYSVLRAIKTIKRADVCLLMLDGKEGLSEQDKRIAGIAAEELKPIIVV 293 Query: 118 SNKMD---------TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQ 165 NK D ++ ++ + E+ L + I +SA T++L + IF++ Sbjct: 294 VNKWDLVDKKSNTMEKMREKLYAELPFLSYAPIEFVSALTGQRTTKLLEIADTIFEE 350 >gi|16765839|ref|NP_461454.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56412602|ref|YP_149677.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|167549461|ref|ZP_02343220.1| ribosome-associated GTPase EngA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167991827|ref|ZP_02572926.1| ribosome-associated GTPase EngA [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168261443|ref|ZP_02683416.1| ribosome-associated GTPase EngA [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168466731|ref|ZP_02700585.1| ribosome-associated GTPase EngA [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|194446079|ref|YP_002041777.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|197264629|ref|ZP_03164703.1| ribosome-associated GTPase EngA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197361537|ref|YP_002141173.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|238912639|ref|ZP_04656476.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|17865704|sp|Q9XCI8|DER_SALTY RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|81821610|sp|Q5PNI6|DER_SALPA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|238689919|sp|B5BAY9|DER_SALPK RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|238693574|sp|B4T0P5|DER_SALNS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|16421063|gb|AAL21413.1| putative GTP-binding protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56126859|gb|AAV76365.1| putative GTP-binding protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|194404742|gb|ACF64964.1| ribosome-associated GTPase EngA [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|195630729|gb|EDX49321.1| ribosome-associated GTPase EngA [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197093013|emb|CAR58446.1| putative GTP-binding protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197242884|gb|EDY25504.1| ribosome-associated GTPase EngA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205325405|gb|EDZ13244.1| ribosome-associated GTPase EngA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205329876|gb|EDZ16640.1| ribosome-associated GTPase EngA [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205349650|gb|EDZ36281.1| ribosome-associated GTPase EngA [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|261247715|emb|CBG25543.1| GTP-binding protein engA [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267994635|gb|ACY89520.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159068|emb|CBW18582.1| GTP-binding protein engA [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312913506|dbj|BAJ37480.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320087014|emb|CBY96783.1| GTP-binding protein engA [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321222780|gb|EFX47851.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322613736|gb|EFY10675.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619521|gb|EFY16397.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625026|gb|EFY21855.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629531|gb|EFY26307.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322634038|gb|EFY30775.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635524|gb|EFY32235.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322639800|gb|EFY36479.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644422|gb|EFY40963.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322648567|gb|EFY45016.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655213|gb|EFY51522.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658260|gb|EFY54526.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664261|gb|EFY60458.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669428|gb|EFY65577.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673155|gb|EFY69261.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676547|gb|EFY72615.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322683297|gb|EFY79311.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685817|gb|EFY81810.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323130847|gb|ADX18277.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323194760|gb|EFZ79948.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199552|gb|EFZ84643.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204673|gb|EFZ89671.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208121|gb|EFZ93066.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210155|gb|EFZ95056.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217023|gb|EGA01745.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221821|gb|EGA06225.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225000|gb|EGA09255.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229289|gb|EGA13413.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235396|gb|EGA19480.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323237418|gb|EGA21481.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323245172|gb|EGA29173.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248875|gb|EGA32801.1| GTP-binding protein Der [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323253162|gb|EGA36994.1| GTP-binding protein Der [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255396|gb|EGA39164.1| GTP-binding protein Der [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323263529|gb|EGA47056.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266356|gb|EGA49844.1| GTP-binding protein Der [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269813|gb|EGA53263.1| GTP-binding protein Der [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|332989446|gb|AEF08429.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 490 Score = 291 bits (745), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 165/478 (34%), Positives = 261/478 (54%), Gaps = 19/478 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A + G F +DT GI Sbjct: 1 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ LAI EA ++LF++D++AG+ P D AI LR + P +V+NK Sbjct: 61 -DGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGT-SELHSVIFKIFKQKYPNHPLE------ 173 D + + YSL EI I+A H G S L V+ P ++ Sbjct: 120 TDGLDPDQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHVLLPWMDDVAPQEEVDEDAEYW 179 Query: 174 -MIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTG 232 E + EE+P+++ + S P+++A+VGRPNVGKSTL NR+LG R++ Sbjct: 180 AQFEAEQNGEEAPEDDFDPQ--------SLPIKLAIVGRPNVGKSTLTNRILGEERVVVY 231 Query: 233 SQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVL 292 G TRDS+ I + DTAG+RK +IT+++E+ +V K++Q++ +++ Sbjct: 232 DMPGTTRDSIYIPMERDEREYVLIDTAGVRKRGKITDAVEKFSVIKTLQAIEDANVVLLV 291 Query: 293 LDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIY 352 +DA QDL ++ + N+G ++V+ +NKWD +S ++ + ++ L I Sbjct: 292 IDAREGISDQDLSLLGFILNSGRSLVIVVNKWDGLSQEVK--EQVKETLDFRLGFIDFAR 349 Query: 353 INTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKY 412 ++ IS G G+ +L SV E R++T+ L + + PP + R +LKY Sbjct: 350 VHFISALHGSGVGNLFESVREAYDSSTRRVSTAMLTRIMTMAVEDHQPPLVRGRRVKLKY 409 Query: 413 ITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I +P+SYKRYL+N R + + G PIR+ F+ +NPY K Sbjct: 410 AHAGGYNPPIVVIHGNQVKDLPDSYKRYLMNYFRKSLEVMGTPIRIQFKEGENPYANK 467 >gi|62181086|ref|YP_217503.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|224582944|ref|YP_002636742.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|81309623|sp|Q57LJ0|DER_SALCH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|254783165|sp|C0PYN4|DER_SALPC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|62128719|gb|AAX66422.1| putative GTP-binding protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|224467471|gb|ACN45301.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|322715573|gb|EFZ07144.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 490 Score = 291 bits (745), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 165/478 (34%), Positives = 261/478 (54%), Gaps = 19/478 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A + G F +DT GI Sbjct: 1 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ LAI EA ++LF++D++AG+ P D AI LR + P +V+NK Sbjct: 61 -DGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGT-SELHSVIFKIFKQKYPNHPLE------ 173 D + + YSL EI I+A H G S L V+ P ++ Sbjct: 120 TDGLDPDQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHVLLPWMDDVAPQEKVDEDAEYW 179 Query: 174 -MIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTG 232 E + EE+P+++ + S P+++A+VGRPNVGKSTL NR+LG R++ Sbjct: 180 AQFEAEQNGEEAPEDDFDPQ--------SLPIKLAIVGRPNVGKSTLTNRILGEERVVVY 231 Query: 233 SQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVL 292 G TRDS+ I + DTAG+RK +IT+++E+ +V K++Q++ +++ Sbjct: 232 DMPGTTRDSIYIPMERDEREYVLIDTAGVRKRGKITDAVEKFSVIKTLQAIEDANVVLLV 291 Query: 293 LDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIY 352 +DA QDL ++ + N+G ++V+ +NKWD +S ++ + ++ L I Sbjct: 292 IDAREGISDQDLSLLGFILNSGRSLVIVVNKWDGLSQEVK--EQVKETLDFRLGFIDFAR 349 Query: 353 INTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKY 412 ++ IS G G+ +L SV E R++T+ L + + PP + R +LKY Sbjct: 350 VHFISALHGSGVGNLFESVREAYDSSTRRVSTAMLTRIMTMAVEDHQPPLVRGRRVKLKY 409 Query: 413 ITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I +P+SYKRYL+N R + + G PIR+ F+ +NPY K Sbjct: 410 AHAGGYNPPIVVIHGNQVKDLPDSYKRYLMNYFRKSLEVMGTPIRIQFKEGENPYANK 467 >gi|115377683|ref|ZP_01464876.1| GTP-binding protein EngA [Stigmatella aurantiaca DW4/3-1] gi|310821559|ref|YP_003953917.1| GTP-binding protein EngA [Stigmatella aurantiaca DW4/3-1] gi|115365289|gb|EAU64331.1| GTP-binding protein EngA [Stigmatella aurantiaca DW4/3-1] gi|309394631|gb|ADO72090.1| GTP-binding protein EngA [Stigmatella aurantiaca DW4/3-1] Length = 462 Score = 291 bits (744), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 154/476 (32%), Positives = 260/476 (54%), Gaps = 35/476 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNRL +++A+V + PG+TRDR Y A F ++DT G G+ Sbjct: 5 VAIVGRPNVGKSTLFNRLAGRRLALVEDEPGVTRDRHYADAQWGDRAFTLIDTGGFVPGE 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD-- 122 S+ KQ+ +Q +LA+ E +ILF+ D +AG+T D A+ LRK P+++ +NK+D Sbjct: 65 KDSLLKQVREQAQLAVEECDVILFVTDGRAGLTSADEAVAGLLRKSGKPVVVAANKLDNA 124 Query: 123 TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 + Q E + + E++ +SAEH LG +L + L+ + + E Sbjct: 125 SDSMQALSGEFFRMGLGEVMPLSAEHALGVPQLVEAV------------LDRLPPKQEGE 172 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 ++ E + +G LR+A++GRPNVGKST++N +L R++ G TRD + Sbjct: 173 DA--EALPDDGT---------LRVAIIGRPNVGKSTMVNAILKEKRVVASEVPGTTRDPI 221 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + +K H + + DTAG+R+ I +EQ +V +++ + + ++L+DAT P Q Sbjct: 222 DSALTYKGHKLILTDTAGIRRKRSIAHRVEQFSVVSALKVMDRSDVAVLLMDATEPAVDQ 281 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D ++ + G A+V+ +NKWD++ + R +L +G I S TG Sbjct: 282 DAKLAGLAEDKGRALVIVVNKWDLIGTDQRRQEAYREALKHSLKFVGYAPIIFTSALTGS 341 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 ++ ++ +E+ + ++ R T LN L+ NP P + + RL YI Q+ ++PP+ Sbjct: 342 KVEKVVDIAVELAEQFRYRAPTPQLNRLLEHMVDSNPAPIVAGKPLRLYYIAQVGTAPPT 401 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCF---------QSSKNPYIK 469 F + C +P ++P+ YKRY+ N+LR F L +P+R+ F ++ K P++K Sbjct: 402 FALTCNYPERVPDMYKRYITNQLRKTFDLR-VPLRLLFRARPGQAKREARKRPHLK 456 >gi|326624338|gb|EGE30683.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 504 Score = 291 bits (744), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 165/478 (34%), Positives = 261/478 (54%), Gaps = 19/478 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A + G F +DT GI Sbjct: 15 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGI 74 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ LAI EA ++LF++D++AG+ P D AI LR + P +V+NK Sbjct: 75 -DGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANK 133 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGT-SELHSVIFKIFKQKYPNHPLE------ 173 D + + YSL EI I+A H G S L V+ P ++ Sbjct: 134 TDGLDPDQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHVLLPWMDDVAPQEEVDEDAEYW 193 Query: 174 -MIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTG 232 E + EE+P+++ + S P+++A+VGRPNVGKSTL NR+LG R++ Sbjct: 194 AQFEAEQNGEEAPEDDFDPQ--------SLPIKLAIVGRPNVGKSTLTNRILGEERVVVY 245 Query: 233 SQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVL 292 G TRDS+ I + DTAG+RK +IT+++E+ +V K++Q++ +++ Sbjct: 246 DMPGTTRDSIYIPMERDEREYVLIDTAGVRKRGKITDAVEKFSVIKTLQAIEDANVVLLV 305 Query: 293 LDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIY 352 +DA QDL ++ + N+G ++V+ +NKWD +S ++ + ++ L I Sbjct: 306 IDAREGISDQDLSLLGFILNSGRSLVIVVNKWDGLSQEVK--EQVKETLDFRLGFIDFAR 363 Query: 353 INTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKY 412 ++ IS G G+ +L SV E R++T+ L + + PP + R +LKY Sbjct: 364 VHFISALHGSGVGNLFESVREAYDSSTRRVSTAMLTRIMTMAVEDHQPPLVRGRRVKLKY 423 Query: 413 ITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I +P+SYKRYL+N R + + G PIR+ F+ +NPY K Sbjct: 424 AHAGGYNPPIVVIHGNQVKDLPDSYKRYLMNYFRKSLEVMGTPIRIQFKEGENPYANK 481 >gi|16761434|ref|NP_457051.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29140869|ref|NP_804211.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213161952|ref|ZP_03347662.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213425335|ref|ZP_03358085.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213609480|ref|ZP_03369306.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213861384|ref|ZP_03385854.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289825430|ref|ZP_06544667.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|26006725|sp|Q8Z4P6|DER_SALTI RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|25328266|pir||AF0821 probable GTP-binding protein STY2764 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503734|emb|CAD02722.1| putative GTP-binding protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29136494|gb|AAO68060.1| putative GTP-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 490 Score = 291 bits (744), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 165/478 (34%), Positives = 261/478 (54%), Gaps = 19/478 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A + G F +DT GI Sbjct: 1 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ LAI EA ++LF++D++AG+ P D AI LR + P +V+NK Sbjct: 61 -DGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGT-SELHSVIFKIFKQKYPNHPLE------ 173 D + + YSL EI I+A H G S L V+ P ++ Sbjct: 120 TDGLDPDQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHVLLPWMDDVAPQEEVDEDAEYW 179 Query: 174 -MIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTG 232 E + EE+P+++ + S P+++A+VGRPNVGKSTL NR+LG R++ Sbjct: 180 AQFEAEQNGEEAPEDDFDPQ--------SLPIKLAIVGRPNVGKSTLTNRILGEERVVVY 231 Query: 233 SQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVL 292 G TRDS+ I + DTAG+RK +IT+++E+ +V K++Q++ +++ Sbjct: 232 DMPGTTRDSIYIPMERDEREYVLIDTAGVRKRGKITDAVEKFSVIKTLQAIEDANVVLLV 291 Query: 293 LDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIY 352 +DA QDL ++ + N+G ++V+ +NKWD +S ++ + ++ L I Sbjct: 292 IDAREGISDQDLSLLGFILNSGRSLVIVVNKWDGLSQEVK--EQVKETLDFRLGFIDFAR 349 Query: 353 INTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKY 412 ++ IS G G+ +L SV E R++T+ L + + PP + R +LKY Sbjct: 350 VHFISALHGSGVGNLFESVREAYDSSTRRVSTAMLTRIMTMAVEDHQPPLVRGRRVKLKY 409 Query: 413 ITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I +P+SYKRYL+N R + + G PIR+ F+ +NPY K Sbjct: 410 AHTGGYNPPIVVIHGNQVKDLPDSYKRYLMNYFRKSLEVMGTPIRIQFKEGENPYANK 467 >gi|57239243|ref|YP_180379.1| GTP-binding protein EngA [Ehrlichia ruminantium str. Welgevonden] gi|58579205|ref|YP_197417.1| GTP-binding protein EngA [Ehrlichia ruminantium str. Welgevonden] gi|57161322|emb|CAH58245.1| putative GTP binding protein EngA [Ehrlichia ruminantium str. Welgevonden] gi|58417831|emb|CAI27035.1| Probable GTP-binding protein engA [Ehrlichia ruminantium str. Welgevonden] Length = 439 Score = 291 bits (744), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 175/469 (37%), Positives = 273/469 (58%), Gaps = 43/469 (9%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST+FNRLVKK+ A+V N P +TRDR G A + G+ F ++DT G+ Sbjct: 4 VAIVGLPNVGKSTIFNRLVKKRSAIVSNVPNLTRDRREGSADLCGLKFKVIDTGGVDYRI 63 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKK-NIPIIIVSNKMDT 123 S+ + DQ +LAI +I F++D++ + +LRK + PII+++NK ++ Sbjct: 64 KLSVL--ILDQVKLAIEACDVIFFVVDARVERDIKNIEFAKYLRKNTHKPIILIANKCES 121 Query: 124 R--IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 R ++ ++ E + +F + ISAEH+LG +L+ + P P Sbjct: 122 RKKCSEVDYLEYF--NFIGPIYISAEHNLGMVDLYDALI-------PFIP---------- 162 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 ES EN TS ++I++VGRPN GKST +NRL+G +R++ S+ G TRD+ Sbjct: 163 -ESNVENFTSSY----------IKISIVGRPNAGKSTFVNRLVGEDRMIVSSEPGTTRDA 211 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 V I + +++ + DTAGMRK ++ITE++E +V KS++S+ + I+++D+ E+ Sbjct: 212 VDIEYEYQDQKFILIDTAGMRKKAKITENIEVTSVYKSIESINRSDIIILMIDSVCGMEQ 271 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVS--DKLNLLQDLRTKAIKNLPQIG-DIYINTISG 358 QDL I + V G A+++ALNKWD++S +L LL+D+R N ++ D+ I IS Sbjct: 272 QDLSIAELVIQKGKAIIIALNKWDVISKEHRLGLLRDIR-----NYNKLSFDVPIIEISA 326 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 + ++ +E+ K RI+T LN WL+ + PP + +LKYITQI+ Sbjct: 327 LKNINCNMVLEKSIELYKYLTMRISTPMLNKWLRLAVDHHRPPLFNGKTVKLKYITQIKV 386 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 PP+F I I +Y++YL+N LR FS+ GIPIRM F+ +KNPY Sbjct: 387 MPPTFAIVINGLYGIDLTYQQYLMNSLRKYFSIDGIPIRMNFKKNKNPY 435 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 32/123 (26%), Positives = 60/123 (48%), Gaps = 5/123 (4%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 L++A+VG PNVGKST+ NRL+ + + +TRD S + ++ DT G+ Sbjct: 2 LKVAIVGLPNVGKSTIFNRLVKKRSAIVSNVPNLTRDRREGSADLCGLKFKVIDTGGV-- 59 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVF-NTGHAVVLALN 322 RI L + + ++ C+ ++DA + + +++ + NT ++L N Sbjct: 60 DYRI--KLSVLILDQVKLAIEACDVIFFVVDARVERDIKNIEFAKYLRKNTHKPIILIAN 117 Query: 323 KWD 325 K + Sbjct: 118 KCE 120 >gi|302380361|ref|ZP_07268831.1| ribosome-associated GTPase EngA [Finegoldia magna ACS-171-V-Col3] gi|303233791|ref|ZP_07320445.1| ribosome-associated GTPase EngA [Finegoldia magna BVS033A4] gi|302311851|gb|EFK93862.1| ribosome-associated GTPase EngA [Finegoldia magna ACS-171-V-Col3] gi|302495225|gb|EFL54977.1| ribosome-associated GTPase EngA [Finegoldia magna BVS033A4] Length = 438 Score = 291 bits (744), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 163/460 (35%), Positives = 261/460 (56%), Gaps = 32/460 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG NVGKSTLFN+L+KK++A+ + PG+TRDRLY +A F +VDT G+ Sbjct: 6 VAIVGRANVGKSTLFNKLIKKRIAITQDDPGVTRDRLYMEAEWQNKYFTVVDTGGLEPKS 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N I K + QTELAI A +ILF++D K GITP D + LR+ +I+V NK+D Sbjct: 66 NEIITKNIKKQTELAIETADVILFMVDGKQGITPIDMEVADMLRRTKKSVILVVNKIDHI 125 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 Q N Y+ Y+L F EI ISA + +G +L + F ++ N ES Sbjct: 126 KQQDNVYDFYNLGFYEIFPISASNSMGLGDLLEAVVSKF-------------DDNSNTES 172 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 ++IT ++ ++G+PNVGKS+LIN LL R++ +G TRD++ Sbjct: 173 D-DDIT--------------KVCLIGKPNVGKSSLINNLLNEERMIVTDIAGTTRDAIDS 217 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 N+K + DTAG+RK +I +E+ +V +++ ++ + ++++DAT +QD Sbjct: 218 KINYKGNEYVFIDTAGLRKRKKIDTEVERYSVVRTLSAIDRSDICVLMIDATEGVSEQDT 277 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 +I+ + G A+++ +NKWD+V + N + D + L + + I IS + + + Sbjct: 278 KILGYAHDQGKAMIILVNKWDLVEKQTNTMNDFKKDIRTKLGFVMYVPIVFISVKENKRI 337 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLK--YITQIQSSPPS 422 D L + +++ + RI+T LN + K L NPPP+ ++ RLK YITQI++ PP Sbjct: 338 DTLFTEIEKVDNNYSMRISTGVLNDVISKAVLLNPPPS--DKGVRLKIFYITQIEARPPK 395 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 FL+F + + SY+RY+ N+LR NFS G+P++ F++ Sbjct: 396 FLVFINRNDLMHFSYQRYIENQLRENFSFEGVPLQFEFKT 435 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/140 (27%), Positives = 70/140 (50%), Gaps = 2/140 (1%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 I + ++G PNVGKS+L N L+ ++ +V + G TRD + + G + +DTAG+ Sbjct: 176 ITKVCLIGKPNVGKSSLINNLLNEERMIVTDIAGTTRDAIDSKINYKGNEYVFIDTAGLR 235 Query: 62 DGK--NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 K + + + +T AI+ + + + +ID+ G++ D I + + +II+ N Sbjct: 236 KRKKIDTEVERYSVVRTLSAIDRSDICVLMIDATEGVSEQDTKILGYAHDQGKAMIILVN 295 Query: 120 KMDTRIAQRNFYEIYSLDFK 139 K D Q N + D + Sbjct: 296 KWDLVEKQTNTMNDFKKDIR 315 >gi|261252182|ref|ZP_05944755.1| GTP-binding protein EngA [Vibrio orientalis CIP 102891] gi|260935573|gb|EEX91562.1| GTP-binding protein EngA [Vibrio orientalis CIP 102891] Length = 495 Score = 291 bits (744), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 167/474 (35%), Positives = 265/474 (55%), Gaps = 7/474 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YGQA + F ++DT GI Sbjct: 1 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGEHEFIVIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ AI+EA ++LF++D +AG+TP D AI++ LRK P ++V NK Sbjct: 61 -DGTEEGVETKMAEQSLAAIDEADVVLFMVDGRAGLTPSDIAISNHLRKIEKPSMLVVNK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D A + + L + + +I+A H G L F +K IE+ Sbjct: 120 VDGIDADAASADFWQLGVENMYQIAAAHGRGVGALIDRALNPFAEKMAEEAKGEIEDLTE 179 Query: 181 NEESPKENITSEGKSSVKNISK----PLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSG 236 E+ +E + + + + + P+++A++GRPNVGKSTL NR+LG R++ G Sbjct: 180 FEDLDEEKLDYTEEEAEEEFKRLQDQPIKLAIIGRPNVGKSTLTNRILGEERVVVYDMPG 239 Query: 237 ITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDAT 296 TRDS+ I + DTAG+R+ RI E++E+ +V K++++V ++++DA Sbjct: 240 TTRDSIYIPMERDGREYVLIDTAGVRRRKRINETVEKFSVVKTLKAVEDANVVLLVIDAR 299 Query: 297 IPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTI 356 QDL ++ N G ++VLA+NKWD + ++ + ++ + + L + I+ I Sbjct: 300 ENISDQDLSLLGFALNAGRSIVLAVNKWDGLD--TDVKEHVKKELDRRLGFVDFARIHFI 357 Query: 357 SGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQI 416 S G G+ L SV E K TR+ TS L ++ + PP + R +LKY Sbjct: 358 SALHGTGVGHLFESVQEAYKSATTRVGTSVLTRIMKMATDDHQPPLVRGRRVKLKYAHAG 417 Query: 417 QSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I N++P+SYKRYL+N R + + G PIR+ FQSS NP+ K Sbjct: 418 GYNPPIVVIHGNQVNELPDSYKRYLMNYYRKSLEIMGTPIRIQFQSSDNPFEGK 471 >gi|269103271|ref|ZP_06155968.1| GTP-binding protein EngA [Photobacterium damselae subsp. damselae CIP 102761] gi|268163169|gb|EEZ41665.1| GTP-binding protein EngA [Photobacterium damselae subsp. damselae CIP 102761] Length = 499 Score = 291 bits (744), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 167/478 (34%), Positives = 271/478 (56%), Gaps = 11/478 (2%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A IN F ++DT GI Sbjct: 1 MIPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEINEHEFIVIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ +AI EA ++LFL+D +AG+T D AI LR +N P +V NK Sbjct: 61 -DGTEEGVETKMAEQSLMAIEEADVVLFLVDGRAGLTAADEAIAKHLRSRNKPTFLVVNK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEM------ 174 +D A + + L E+ +I+A + G + L + F + E+ Sbjct: 120 IDGIDADSACADFWKLGADEMHQIAASQNRGVTALMERALEPFFENISGSDEELESDEIS 179 Query: 175 IENNKRNEESPKENITSE-GKSSVKNI-SKPLRIAVVGRPNVGKSTLINRLLGYNRLLTG 232 IE+ E N++ + +++ K + +P+++A++GRPNVGKSTL NR+LG R++ Sbjct: 180 IEDLNSVAEIENANLSEQDAEAAYKRLQEQPIKLAIIGRPNVGKSTLTNRILGEERVVVY 239 Query: 233 SQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVL 292 G TRDS+ I + DTAG+R+ + E++E+ +V +++++V +++ Sbjct: 240 DMPGTTRDSIYIPMERDGQEYVLIDTAGIRRRKNMHEAVEKFSVIQTLKAVEDANVVLLI 299 Query: 293 LDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIY 352 +DA QDL ++ N G ++V+A+NKWD + + ++ + ++T+ + L + Sbjct: 300 IDARENISDQDLSLLGFALNAGRSLVIAVNKWDGLDN--DVKERVKTELDRRLGFVDFAR 357 Query: 353 INTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKY 412 I+ IS G G+ L SV+E + RI+TS L +Q Q + PP I R +LKY Sbjct: 358 IHFISALHGTGVGHLYESVVEAYQSATKRISTSMLTRIMQMAQDDHQPPMIRGRRVKLKY 417 Query: 413 ITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP ++ N++P SYKRYL+N R + + G PIR+ FQ+S+NP+ K Sbjct: 418 AHAGGYNPPIIVVHGNLVNELPGSYKRYLMNYYRKSLEMMGTPIRIQFQNSENPFETK 475 >gi|254506757|ref|ZP_05118897.1| GTP-binding protein EngA [Vibrio parahaemolyticus 16] gi|219550338|gb|EED27323.1| GTP-binding protein EngA [Vibrio parahaemolyticus 16] Length = 494 Score = 291 bits (744), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 165/473 (34%), Positives = 263/473 (55%), Gaps = 6/473 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YGQA + F ++DT GI Sbjct: 1 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGEHEFIVIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M Q+ AI+EA ++LF++D +AG+T D AI LRK P ++V NK Sbjct: 61 -DGTEEGVETKMAQQSLAAIDEADVVLFMVDGRAGLTAADEAIAKHLRKLEKPSMLVVNK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNH---PLEMIEN 177 +D A E + L + + +I+A H G + L + F +K + LE + Sbjct: 120 VDGIDADAASAEFWQLGVENMYQIAAAHGRGVTALIELALNPFAEKLLDESKGELEDLTE 179 Query: 178 NKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGI 237 + EE + + + +P+++A++GRPNVGKSTL NR+LG R++ G Sbjct: 180 FEDEEEKLDYSEEEAEEEFTRLQDQPIKLAIIGRPNVGKSTLTNRILGEERVVVYDMPGT 239 Query: 238 TRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATI 297 TRDS+ I + DTAG+R+ +RI E++E+ +V K++++V ++++DA Sbjct: 240 TRDSIYIPMERDGREYVLIDTAGVRRRTRINETVEKFSVVKTLKAVEDANVVLLVIDARE 299 Query: 298 PFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTIS 357 QDL ++ N G ++V+A+NKWD + +++ + ++ + + L + I+ IS Sbjct: 300 NISDQDLSLLGFALNAGRSIVIAVNKWDGLD--MDVKEHVKKELDRRLGFVDFARIHFIS 357 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 G G+ L SV E K TR+ TS L ++ + PP + R +LKY Sbjct: 358 ALHGTGVGHLFESVQEAYKSATTRVGTSVLTRIMKMATEDHQPPMVRGRRVKLKYAHAGG 417 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I N +P+SYKRYL+N R + + G PIR+ FQ+S NP+ K Sbjct: 418 YNPPIVVIHGNQVNDLPDSYKRYLMNYFRKSLEIMGTPIRIIFQNSDNPFEGK 470 >gi|207857927|ref|YP_002244578.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|238690463|sp|B5R578|DER_SALEP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|206709730|emb|CAR34082.1| putative GTP-binding protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] Length = 490 Score = 290 bits (743), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 165/478 (34%), Positives = 261/478 (54%), Gaps = 19/478 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A + G F +DT GI Sbjct: 1 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ LAI EA ++LF++D++AG+ P D AI LR + P +V+NK Sbjct: 61 -DGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGT-SELHSVIFKIFKQKYPNHPLE------ 173 D + + YSL EI I+A H G S L V+ P ++ Sbjct: 120 TDGLDPDQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHVLLPWMDDVAPQEEVDEDAEYW 179 Query: 174 -MIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTG 232 E + EE+P+++ + S P+++A+VGRPNVGKSTL NR+LG R++ Sbjct: 180 AQFEVEQNGEEAPEDDFDPQ--------SLPIKLAIVGRPNVGKSTLTNRILGEERVVVY 231 Query: 233 SQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVL 292 G TRDS+ I + DTAG+RK +IT+++E+ +V K++Q++ +++ Sbjct: 232 DMPGTTRDSIYIPMERDEREYVLIDTAGVRKRGKITDAVEKFSVIKTLQAIEDANVVLLV 291 Query: 293 LDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIY 352 +DA QDL ++ + N+G ++V+ +NKWD +S ++ + ++ L I Sbjct: 292 IDAREGISDQDLSLLGFILNSGRSLVIVVNKWDGLSQEVK--EQVKETLDFRLGFIDFAR 349 Query: 353 INTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKY 412 ++ IS G G+ +L SV E R++T+ L + + PP + R +LKY Sbjct: 350 VHFISALHGSGVGNLFESVREAYDSSTRRVSTAMLTRIMTMAVEDHQPPLVRGRRVKLKY 409 Query: 413 ITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I +P+SYKRYL+N R + + G PIR+ F+ +NPY K Sbjct: 410 AHAGGYNPPIVVIHGNQVKDLPDSYKRYLMNYFRKSLEVMGTPIRIQFKEGENPYANK 467 >gi|169824551|ref|YP_001692162.1| GTP-binding protein [Finegoldia magna ATCC 29328] gi|238687753|sp|B0S1N2|DER_FINM2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|167831356|dbj|BAG08272.1| GTP-binding protein [Finegoldia magna ATCC 29328] Length = 438 Score = 290 bits (743), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 163/460 (35%), Positives = 261/460 (56%), Gaps = 32/460 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG NVGKSTLFN+L+KK++A+ + PG+TRDRLY +A F +VDT G+ Sbjct: 6 VAIVGRANVGKSTLFNKLIKKRIAITQDDPGVTRDRLYMEAEWQNKYFTVVDTGGLEPKS 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N I K + QTELAI A +ILF++D K GITP D + LR+ +I+V NK+D Sbjct: 66 NEIITKNIKKQTELAIETADVILFMVDGKQGITPIDMEVADMLRRTKKSVILVVNKIDHI 125 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 Q N Y+ Y+L F EI ISA + +G +L + F ++ N ES Sbjct: 126 KQQDNVYDFYNLGFYEIFPISASNSMGLGDLLEAVVSKF-------------DDNSNTES 172 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 ++IT ++ ++G+PNVGKS+LIN LL R++ +G TRD++ Sbjct: 173 D-DDIT--------------KVCLIGKPNVGKSSLINNLLNEERMIVTDIAGTTRDAIDS 217 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 N+K + DTAG+RK +I +E+ +V +++ ++ + ++++DAT +QD Sbjct: 218 KINYKGNEYIFIDTAGLRKRKKIDTEVERYSVVRTLSAIDRSDICVLMIDATEGVSEQDT 277 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 +I+ + G A+++ +NKWD+V + N + D + L + + I IS + + + Sbjct: 278 KILGYAHDQGKAMIILVNKWDLVEKQTNTMNDFKKDIRTKLGFVMYVPIVFISVKENKRI 337 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLK--YITQIQSSPPS 422 D L + +++ + RI+T LN + K L NPPP+ ++ RLK YITQI++ PP Sbjct: 338 DTLFTEIEKVDNNYSMRISTGVLNDVISKAVLLNPPPS--DKGVRLKIFYITQIEARPPK 395 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 FL+F + + SY+RY+ N+LR NFS G+P++ F++ Sbjct: 396 FLVFINRNDLMHFSYQRYIENQLRENFSFEGVPLQFEFKT 435 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/140 (27%), Positives = 70/140 (50%), Gaps = 2/140 (1%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 I + ++G PNVGKS+L N L+ ++ +V + G TRD + + G + +DTAG+ Sbjct: 176 ITKVCLIGKPNVGKSSLINNLLNEERMIVTDIAGTTRDAIDSKINYKGNEYIFIDTAGLR 235 Query: 62 DGK--NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 K + + + +T AI+ + + + +ID+ G++ D I + + +II+ N Sbjct: 236 KRKKIDTEVERYSVVRTLSAIDRSDICVLMIDATEGVSEQDTKILGYAHDQGKAMIILVN 295 Query: 120 KMDTRIAQRNFYEIYSLDFK 139 K D Q N + D + Sbjct: 296 KWDLVEKQTNTMNDFKKDIR 315 >gi|32455227|gb|AAP83329.1| putative GTP-binding protein [Salmonella enterica subsp. enterica serovar Enteritidis] Length = 490 Score = 290 bits (743), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 164/478 (34%), Positives = 262/478 (54%), Gaps = 19/478 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A + G F +DT GI Sbjct: 1 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ LAI EA ++LF++D++AG+ P D AI LR + P +V+NK Sbjct: 61 -DGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGT-SELHSVIFKIFKQKYPNHPLE------ 173 D + + YSL EI I+A H G S L V+ P ++ Sbjct: 120 TDGLDPDQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHVLLPWMDDVAPQEEVDEDAEYW 179 Query: 174 -MIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTG 232 E + EE+P+++ + S P+++A+VGRPNVGKSTL NR+LG R++ Sbjct: 180 AQFEVEQNGEEAPEDDFDPQ--------SLPIKLAIVGRPNVGKSTLTNRILGEERVVVY 231 Query: 233 SQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVL 292 G TRDS+ I + DTAG+RK +IT+++E+ +V K++Q++ +++ Sbjct: 232 DMPGTTRDSIYIPMERDEREYVLIDTAGVRKRGKITDAVEKFSVIKTLQAIEDANVVLLV 291 Query: 293 LDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIY 352 +DA QDL ++ + N+G ++V+ +NKWD +S ++ + ++ L I Sbjct: 292 IDAREGISDQDLSLLGFILNSGRSLVIVVNKWDGLSQEVK--EQVKETLDFRLGFIDFAR 349 Query: 353 INTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKY 412 ++ IS G G+ +L SV E R++T+ L + + PP + R +LKY Sbjct: 350 VHFISALHGSGVGNLFESVREAYDSSTRRVSTAMLTRIMTMAVEDHQPPLVRGRRVKLKY 409 Query: 413 ITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP+ +I +P+SYKRYL++ R + + G PIR+ F+ +NPY K Sbjct: 410 AHAGGYNPPTVVIHGNQVKDLPDSYKRYLMDYFRKSLEVMGTPIRIQFKEGENPYANK 467 >gi|238752471|ref|ZP_04613947.1| GTP-binding protein engA [Yersinia rohdei ATCC 43380] gi|238709320|gb|EEQ01562.1| GTP-binding protein engA [Yersinia rohdei ATCC 43380] Length = 494 Score = 290 bits (743), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 168/478 (35%), Positives = 262/478 (54%), Gaps = 15/478 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI IA+VG PNVGKSTLFNRL + A+V + PG+TRDR YG+A + G F ++DT GI Sbjct: 1 MIPVIALVGRPNVGKSTLFNRLTHTRDALVADFPGLTRDRKYGRAEVEGHEFIVIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M Q+ LAI EA ++LF++D++AG+ P D I LR + +V+NK Sbjct: 61 -DGTEDGVETKMAGQSLLAIEEADIVLFMVDARAGLMPADQGIAQHLRSREKATFLVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL-HSVIFKIFKQKYPNHPLEMIENNK 179 D + YSL E+ I+A H G ++L V+ + P L E N Sbjct: 120 TDGIDPDTATADFYSLGLGEVHAIAASHGRGVTQLIEDVMAPYMDAEEPEVELTDEEANA 179 Query: 180 R---NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSG 236 +E ++ I + + +S P+++A+VGRPNVGKSTL NR+LG +R++ G Sbjct: 180 AYWAAQEEDEDAIPEDEEDDFDPLSLPIKLAIVGRPNVGKSTLTNRILGEDRVVVYDMPG 239 Query: 237 ITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDAT 296 TRDS+ I + DTAG+RK +ITE++E+ +V K++Q++ ++++DA Sbjct: 240 TTRDSIYIPMTRDEREYILIDTAGVRKRGKITEAVEKFSVIKTLQAIEDSNVVLLVIDAR 299 Query: 297 IPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSD----KLNLLQDLRTKAIKNLPQIGDIY 352 QDL ++ + N+G ++V+A+NKWD +S+ ++ + DLR L + Sbjct: 300 DGISDQDLSLLGFILNSGRSLVIAVNKWDGMSEEARTQVKDMLDLR------LGFVDFAR 353 Query: 353 INTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKY 412 I+ IS G G+ +L S+ E R+ TS L +Q + + PP + R +LKY Sbjct: 354 IHFISALHGSGVGNLFESIQEAYDCSTKRVGTSLLTRIMQMAEEDHQPPLVRGRRVKLKY 413 Query: 413 ITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I + +SYKRYL+N R + + G PIR+ F+ +NP+ K Sbjct: 414 AHAGGYNPPIVVIHGNQVTDLSDSYKRYLMNYFRRSLKVMGTPIRIQFKEGENPFAGK 471 >gi|294637684|ref|ZP_06715962.1| ribosome-associated GTPase EngA [Edwardsiella tarda ATCC 23685] gi|291089160|gb|EFE21721.1| ribosome-associated GTPase EngA [Edwardsiella tarda ATCC 23685] Length = 496 Score = 290 bits (743), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 168/480 (35%), Positives = 264/480 (55%), Gaps = 17/480 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A +NG F I+DT GI Sbjct: 1 MIPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVNGHEFIIIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + M +Q+ LAI EA ++LFL+D+++G+ P D AI LR ++ +V+NK Sbjct: 61 -DGSENGVETHMAEQSLLAIEEADIVLFLVDARSGLLPADEAIARHLRSRDKSTFLVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL-HSVIFKIFKQKYPNHPLEMIENNK 179 D A + YSL E+ I+A H G ++L + Q+ P L E N Sbjct: 120 TDGIDADVAIGDFYSLGLGEVHPIAASHGRGVTQLIEDALVPFIPQEEPAPELSEEEANA 179 Query: 180 RNEESPKENITSEGKSSVKN-----ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQ 234 + + + I +P++IA+VGRPNVGKSTL NR+LG +R++ Sbjct: 180 AYWAELEAEEAEAEAEADEEEEFDPIGQPIKIAIVGRPNVGKSTLTNRILGEDRVVVYDM 239 Query: 235 SGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLD 294 G TRDS+ I + DTAG+RK ++T+++E+ +V K++Q++ ++++D Sbjct: 240 PGTTRDSIYIPMERDEREYVLIDTAGVRKRGKVTDTVEKFSVIKTLQAIEDANVVLLVID 299 Query: 295 ATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVS----DKLNLLQDLRTKAIKNLPQIGD 350 A QDL ++ + N+G ++V+ +NKWD +S +++ + DLR L + Sbjct: 300 ARQGISDQDLSLLGFILNSGRSLVVVVNKWDGLSLEVKEQVKDMLDLR------LGFVDF 353 Query: 351 IYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRL 410 I+ IS G G+ +L S+ E + R++TS L + Q + PP + R +L Sbjct: 354 ARIHFISALHGSGVGNLFESIQEAYESATRRVSTSMLTRIMTMAQDDHQPPMVRGRRVKL 413 Query: 411 KYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 KY +PP +I +P+SYKRYL+N R + ++ G PIR+ F+ NP+ K Sbjct: 414 KYAHAGGYNPPIVVIHGNQVKDLPDSYKRYLMNYFRRSLNVMGTPIRIQFKEGDNPFAGK 473 >gi|297588533|ref|ZP_06947176.1| ribosome-associated GTPase EngA [Finegoldia magna ATCC 53516] gi|297573906|gb|EFH92627.1| ribosome-associated GTPase EngA [Finegoldia magna ATCC 53516] Length = 438 Score = 290 bits (742), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 163/460 (35%), Positives = 261/460 (56%), Gaps = 32/460 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG NVGKSTLFN+L+KK++A+ + PG+TRDRLY +A F +VDT G+ Sbjct: 6 VAIVGRANVGKSTLFNKLIKKRIAITQDDPGVTRDRLYMEAEWQNKYFTVVDTGGLEPKS 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N I K + QTELAI A +ILF++D K GITP D + LR+ +I+V NK+D Sbjct: 66 NEIITKNIKKQTELAIETADVILFMVDGKQGITPIDMEVADMLRRTKKSVILVVNKIDHI 125 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 Q N Y+ Y+L F EI ISA + +G +L + F ++ N ES Sbjct: 126 KQQDNVYDFYNLGFYEIFPISASNSMGLGDLLEAVVSKF-------------DDNSNTES 172 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 ++IT ++ ++G+PNVGKS+LIN LL R++ +G TRD++ Sbjct: 173 D-DDIT--------------KVCLIGKPNVGKSSLINNLLNEERMIVTDIAGTTRDAIDS 217 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 N+K + DTAG+RK +I +E+ +V +++ ++ + ++++DAT +QD Sbjct: 218 KINYKGNEYIFIDTAGLRKRRKIDTEVERYSVVRTLSAIDRSDICVLMIDATEGVSEQDT 277 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 +I+ + G A+++ +NKWD+V + N + D + L + + I IS + + + Sbjct: 278 KILGYAHDQGKAMIILVNKWDLVEKQTNTMNDFKKDIRTKLGFVMYVPIVFISVKENKRI 337 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLK--YITQIQSSPPS 422 D L + +++ + RI+T LN + K L NPPP+ ++ RLK YITQI++ PP Sbjct: 338 DTLFTEIEKVDNNYSMRISTGVLNDVISKAVLLNPPPS--DKGVRLKIFYITQIEARPPK 395 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 FL+F + + SY+RY+ N+LR NFS G+P++ F++ Sbjct: 396 FLVFINRNDLMHFSYQRYIENQLRENFSFEGVPLQFEFKT 435 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 37/140 (26%), Positives = 70/140 (50%), Gaps = 2/140 (1%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 I + ++G PNVGKS+L N L+ ++ +V + G TRD + + G + +DTAG+ Sbjct: 176 ITKVCLIGKPNVGKSSLINNLLNEERMIVTDIAGTTRDAIDSKINYKGNEYIFIDTAGLR 235 Query: 62 DGK--NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 + + + + +T AI+ + + + +ID+ G++ D I + + +II+ N Sbjct: 236 KRRKIDTEVERYSVVRTLSAIDRSDICVLMIDATEGVSEQDTKILGYAHDQGKAMIILVN 295 Query: 120 KMDTRIAQRNFYEIYSLDFK 139 K D Q N + D + Sbjct: 296 KWDLVEKQTNTMNDFKKDIR 315 >gi|237732490|ref|ZP_04562971.1| GTP-binding protein EngA [Citrobacter sp. 30_2] gi|226908029|gb|EEH93947.1| GTP-binding protein EngA [Citrobacter sp. 30_2] Length = 504 Score = 290 bits (742), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 167/482 (34%), Positives = 264/482 (54%), Gaps = 27/482 (5%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A I G F +DT GI Sbjct: 15 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGI 74 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ LAI EA ++LF++D++AG+ P D AI LR + P +V+NK Sbjct: 75 -DGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSRQKPTFLVANK 133 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGT-SELHSVIFKIFKQKYPNHPLE------ 173 D + + YSL EI I+A H G S L V+ P ++ Sbjct: 134 TDGLDPDQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHVLLPWMDDVAPQEEVDEDAEYW 193 Query: 174 -MIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTG 232 +E + EE P+++ + P+++A+VGRPNVGKSTL NR+LG +R++ Sbjct: 194 AQLEAKENGEEEPEDDFNPQ--------DLPIKLAIVGRPNVGKSTLTNRILGEDRVVVY 245 Query: 233 SQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVL 292 G TRDS+ I + DTAG+RK +ITE++E+ +V K++Q++ +++ Sbjct: 246 DMPGTTRDSIYIPMQRDEREYVLIDTAGVRKRGKITEAVEKFSVIKTLQAIEDANVVMLV 305 Query: 293 LDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLP-QIGDI 351 +DA QDL ++ + N+G ++V+ +NKWD L Q+++ + + L ++G I Sbjct: 306 IDAREGISDQDLSLLGFILNSGRSLVIVVNKWD------GLTQEVKEQVKETLDFRLGFI 359 Query: 352 ---YINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYN 408 ++ IS G G+ +L SV E R++T+ L + + PP + R Sbjct: 360 DFARVHFISALHGSGVGNLFESVREAYDSSTRRVSTAMLTRIMTMAVEDHQPPLVRGRRV 419 Query: 409 RLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYI 468 +LKY +PP +I +P+SYKRYL+N R + + G PIR+ F+ +NP+ Sbjct: 420 KLKYAHAGGYNPPIVVIHGNQVKDLPDSYKRYLMNYFRKSLDVMGTPIRIQFKEGENPFA 479 Query: 469 KK 470 K Sbjct: 480 NK 481 >gi|163802477|ref|ZP_02196370.1| GTP-binding protein EngA [Vibrio sp. AND4] gi|159173778|gb|EDP58593.1| GTP-binding protein EngA [Vibrio sp. AND4] Length = 498 Score = 290 bits (742), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 169/474 (35%), Positives = 269/474 (56%), Gaps = 10/474 (2%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGV-IFNIVDTAG 59 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YGQA + F ++DT G Sbjct: 1 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQASLGEEHEFIVIDTGG 60 Query: 60 IADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 I DG + +M +Q+ AI+EA ++LFL+D +AG+TP D AI + LRK P ++V N Sbjct: 61 I-DGTEEGVETKMAEQSLAAIDEADVVLFLVDGRAGLTPSDEAIAAHLRKIEKPAMLVVN 119 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLG-TSELHSVIFKIFKQKYPNHPLE-MIEN 177 K+D A + + L ++ I+A H G T+ L + F + E IE+ Sbjct: 120 KIDGIDADAACADFWQLGVDDMYHIAAAHGRGVTALLERALAPFFDDLLASESEEGEIED 179 Query: 178 --NKRNEESPKENITSE-GKSSVKNI-SKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGS 233 +EE E+ T E ++ K + +P+++A++GRPNVGKSTL NR+LG R++ Sbjct: 180 LTGFEDEELAIEDYTEEDAEAEFKRLQDQPIKLAIIGRPNVGKSTLTNRILGEERVVVYD 239 Query: 234 QSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLL 293 G TRDS+ I + DTAG+R+ RI E++E+ +V K++++V ++++ Sbjct: 240 MPGTTRDSIYIPMERDGREYVLIDTAGVRRRGRINETVEKFSVVKTLKAVEDANVVLLVI 299 Query: 294 DATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYI 353 DA QDL ++ N G ++VLA+NKWD + +++ ++++ + + L + I Sbjct: 300 DARENISDQDLSLLGFALNAGRSIVLAVNKWDGLDNEVK--ENVKKELDRRLGFVDFARI 357 Query: 354 NTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYI 413 + IS G G+ L S+ E K TR+ TS L ++ + PP + R +LKY Sbjct: 358 HFISALHGTGVGHLFESIQEAYKSATTRVGTSVLTRIMKMATDDHQPPMVRGRRIKLKYA 417 Query: 414 TQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 +PP ++ ++P+SYKRYL+N R + + G PIR+ FQ+S NPY Sbjct: 418 HAGGYNPPIVVVHGNMVRELPDSYKRYLMNYFRKSLEIMGTPIRINFQNSDNPY 471 >gi|58617258|ref|YP_196457.1| GTP-binding protein EngA [Ehrlichia ruminantium str. Gardel] gi|58416870|emb|CAI27983.1| Probable GTP-binding protein engA [Ehrlichia ruminantium str. Gardel] Length = 439 Score = 290 bits (742), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 174/469 (37%), Positives = 272/469 (57%), Gaps = 43/469 (9%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST+FNRLVKK+ A+V N P +TRDR G A + G+ F ++DT G+ Sbjct: 4 VAIVGLPNVGKSTIFNRLVKKRSAIVSNVPNLTRDRREGSADLCGLKFKVIDTGGVDYRI 63 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKK-NIPIIIVSNKMDT 123 S+ + DQ +LAI +I F++D++ + +LRK PII+++NK ++ Sbjct: 64 KLSVL--ILDQVKLAIEACDVIFFVVDARVERDIKNIEFAKYLRKNTQKPIILIANKCES 121 Query: 124 R--IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 R ++ ++ E + +F + ISAEH+LG +L+ + P P Sbjct: 122 RKKCSEVDYLEYF--NFIGPIYISAEHNLGMVDLYDALI-------PFIP---------- 162 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 ES EN+TS ++I++VGRPN GKST +NRL+G +R++ S+ G TRD+ Sbjct: 163 -ESNVENLTSSY----------IKISIVGRPNAGKSTFVNRLVGEDRMIVSSEPGTTRDA 211 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 V I + ++ + DTAGMRK ++ITE++E +V KS++S+ + I+++D+ E+ Sbjct: 212 VDIEYEYQGQKFILIDTAGMRKKAKITENIELTSVYKSIESINRSDIVILMIDSVYSIEQ 271 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVSD--KLNLLQDLRTKAIKNLPQIG-DIYINTISG 358 QDL I + + G A+++ALNKWD++S +L LL+D+R N ++ D+ I IS Sbjct: 272 QDLSIAELIIQKGKAIIIALNKWDVISKEHRLGLLRDIR-----NYNKLSFDVPIIEISA 326 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 + ++ +E+ K RI+T LN WL+ + PP + +LKYITQI+ Sbjct: 327 LKNINCNMVLEKSIELYKYLTMRISTPMLNKWLRFAVDHHRPPLFNGKTVKLKYITQIKV 386 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 PP+F I I +Y++YL+N LR FS+ GIPIRM F+ +KNPY Sbjct: 387 MPPTFAIVINGLYGIDLTYQQYLMNSLRKYFSIDGIPIRMNFKKNKNPY 435 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 32/123 (26%), Positives = 60/123 (48%), Gaps = 5/123 (4%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 L++A+VG PNVGKST+ NRL+ + + +TRD S + ++ DT G+ Sbjct: 2 LKVAIVGLPNVGKSTIFNRLVKKRSAIVSNVPNLTRDRREGSADLCGLKFKVIDTGGV-- 59 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVF-NTGHAVVLALN 322 RI L + + ++ C+ ++DA + + +++ + NT ++L N Sbjct: 60 DYRI--KLSVLILDQVKLAIEACDVIFFVVDARVERDIKNIEFAKYLRKNTQKPIILIAN 117 Query: 323 KWD 325 K + Sbjct: 118 KCE 120 >gi|153833535|ref|ZP_01986202.1| GTP-binding protein EngA [Vibrio harveyi HY01] gi|148870186|gb|EDL69127.1| GTP-binding protein EngA [Vibrio harveyi HY01] Length = 498 Score = 290 bits (741), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 169/474 (35%), Positives = 269/474 (56%), Gaps = 10/474 (2%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGV-IFNIVDTAG 59 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YGQA + F ++DT G Sbjct: 1 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQARLGEEHEFIVIDTGG 60 Query: 60 IADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 I DG + +M +Q+ AI+EA ++LFL+D +AG+TP D AI + LRK P ++V N Sbjct: 61 I-DGTEEGVETKMAEQSLAAIDEADVVLFLVDGRAGLTPSDEAIAAHLRKIEKPAMLVVN 119 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLG-TSELHSVIFKIFKQKYPNHPLE-MIEN 177 K+D A + + L ++ +I+A H G T+ L + F + E IE+ Sbjct: 120 KIDGIDADAACADFWQLGVDDMYQIAAAHGRGVTALLERALAPFFDDLLASESEEGEIED 179 Query: 178 --NKRNEESPKENITSE-GKSSVKNI-SKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGS 233 +EE E+ T E ++ K + +P+++A++GRPNVGKSTL NR+LG R++ Sbjct: 180 LTEFEDEELTVEDYTEEDAEAEFKRLQDQPIKLAIIGRPNVGKSTLTNRILGEERVVVYD 239 Query: 234 QSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLL 293 G TRDS+ I + DTAG+R+ RI E++E+ +V K++++V ++++ Sbjct: 240 MPGTTRDSIYIPMERDGREYVLIDTAGVRRRGRINETVEKFSVVKTLKAVEDANVVLLVI 299 Query: 294 DATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYI 353 DA QDL ++ N G ++VLA+NKWD + +++ ++++ + + L + I Sbjct: 300 DARENISDQDLSLLGFALNAGRSIVLAVNKWDGLDNEVK--ENVKKELDRRLGFVDFARI 357 Query: 354 NTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYI 413 + IS G G+ L S+ E K TR+ TS L ++ + PP + R +LKY Sbjct: 358 HFISALHGTGVGHLFESIQEAYKSATTRVGTSVLTRIMKMATDDHQPPMVRGRRIKLKYA 417 Query: 414 TQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 +PP ++ +P+SYKRYL+N R + + G PIR+ FQ+S NPY Sbjct: 418 HAGGYNPPIVVVHGNMVRDLPDSYKRYLMNYFRKSLEIMGTPIRINFQNSDNPY 471 >gi|152978550|ref|YP_001344179.1| GTP-binding protein EngA [Actinobacillus succinogenes 130Z] gi|150840273|gb|ABR74244.1| small GTP-binding protein [Actinobacillus succinogenes 130Z] Length = 503 Score = 290 bits (741), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 170/481 (35%), Positives = 267/481 (55%), Gaps = 22/481 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YGQA I+G F ++DT GI DG Sbjct: 6 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQANISGYDFIVIDTGGI-DGT 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPI-IIVSNKMDT 123 + ++M +Q+ LAI EA ++LFL+D++AG+TP D I ++LR++ I+V+NK D Sbjct: 65 EEGVEEKMAEQSLLAIEEADVVLFLVDARAGLTPADIGIANYLRQRQSKTTIVVANKTDG 124 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 A + E Y L EI +I+A G ++L + +K + E+ + +E Sbjct: 125 IDADSHCAEFYQLGLGEITQIAAAQGRGVAQLMEAVLAPLAEKIKKNTEEIEDTKDSDEW 184 Query: 184 SPKENITSEGKSSV------KNISKP----LRIAVVGRPNVGKSTLINRLLGYNRLLTGS 233 + + E +++ + +KP ++IA+VGRPNVGKSTL NR+LG +R++ Sbjct: 185 EQGFDFSDENDTALLDEALEEENTKPDHRNIKIAIVGRPNVGKSTLTNRILGEDRVVVYD 244 Query: 234 QSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLL 293 G TRDS+ I I DTAG+RK ++ ++E+ +V K++Q+++ ++ + Sbjct: 245 LPGTTRDSIYIPMERDGQHYTIIDTAGVRKRGKVHLAVEKFSVIKTLQAIQDANVVLLTI 304 Query: 294 DATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDI-- 351 DA QDL ++ + N G ++V+ +NKWD L QD++ + L + D Sbjct: 305 DAREGISDQDLSLLGFILNAGRSLVIVVNKWD------GLDQDIKDRVKSELDRRLDFID 358 Query: 352 --YINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNR 409 ++ IS G G+ +L SV E ++TTS L LQ ++ PP R + Sbjct: 359 FARVHFISALHGSGVGNLFESVREAYACATQKMTTSLLTRILQMATDEHQPPMTGGRRIK 418 Query: 410 LKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIK 469 LKY +PP +I +K+P+SYKRYL N R + + G PIR+ FQ NP+ Sbjct: 419 LKYAHPGGYNPPIIVIHGNQMDKLPDSYKRYLSNYYRRSLKIIGSPIRIQFQEGSNPFAG 478 Query: 470 K 470 K Sbjct: 479 K 479 >gi|325954552|ref|YP_004238212.1| GTP-binding protein engA [Weeksella virosa DSM 16922] gi|323437170|gb|ADX67634.1| GTP-binding protein engA [Weeksella virosa DSM 16922] Length = 435 Score = 290 bits (741), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 161/457 (35%), Positives = 247/457 (54%), Gaps = 28/457 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST FNRLV+K+ A+V + G+TRDR YG++ NGV F ++DT G G Sbjct: 5 VAIVGRPNVGKSTFFNRLVQKRQAIVDDVSGVTRDRHYGKSDWNGVEFTVIDTGGYVVGS 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +++ Q ELA++EA++ILF++D++ G+T D ++ LRK +V NK+DT Sbjct: 65 EDTFEEEIRKQVELAVDEANVILFMVDNQVGLTDMDKEVSHLLRKAKKKTFLVVNKVDTN 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + YE Y+L F +I I+A GT +L + F+ K E + E Sbjct: 125 KNLDDSYEFYTLGFDKIFTIAAISGSGTGDLLDEVVDSFETK---------EFEDKFEGL 175 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P RIA+VGRPN GKSTLIN LLG R + +G TRDS+ Sbjct: 176 P-------------------RIAIVGRPNAGKSTLINALLGEERNIVTDVAGTTRDSIET 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 +N H + DTAGMRK ++ E LE +V ++++++ C+ ++++D + E QDL Sbjct: 217 LYNKFGHKFVLVDTAGMRKKGKVAEDLEFYSVMRAIRTIEECDVCVLVVDGSRGLEAQDL 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 I+ VV+ +NKWD+V + N ++D + D+ I IS + + Sbjct: 277 NILYLAERNRKGVVILVNKWDLVEKQTNTMRDFEKMIKTKIAPFTDVPILFISALNKQRI 336 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 + +++N+ RI TS LN + PPP +Y ++KY+TQ+ + P F Sbjct: 337 HKAIEVFMQVNENRNRRIKTSKLNELMLPLIEITPPPAYKGKYIKIKYVTQLPTRTPQFA 396 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 F P I E YKR++ N+LR +F SG+PI + F+ Sbjct: 397 FFANLPQYIREPYKRFIENQLRKSFDFSGVPIEIYFR 433 >gi|257468935|ref|ZP_05633029.1| GTP-binding protein [Fusobacterium ulcerans ATCC 49185] gi|317063183|ref|ZP_07927668.1| GTP-binding protein [Fusobacterium ulcerans ATCC 49185] gi|313688859|gb|EFS25694.1| GTP-binding protein [Fusobacterium ulcerans ATCC 49185] Length = 441 Score = 289 bits (740), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 158/458 (34%), Positives = 257/458 (56%), Gaps = 29/458 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFN LV ++A+V + PG+TRDRLY + NGV F +VDT G+ Sbjct: 5 VAIVGRPNVGKSTLFNNLVGDRIAIVDDMPGVTRDRLYRETEWNGVEFVVVDTGGLEPRN 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N + ++ +Q E+A+NEA +ILF++D K+G+ P D I LRKK PII+ NK+D Sbjct: 65 NEFMMTKIKEQAEVAMNEADVILFVVDGKSGVNPLDEEIAYILRKKQKPIILCVNKIDNF 124 Query: 125 IAQRN-FYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + Q++ Y+ + L F+ ++ +S H + ++ ++ EMIE EE Sbjct: 125 LQQQDDVYDFWGLGFEHLIPVSGAHKVNLGDMLDMV------------TEMIEKIDLPEE 172 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 +E++ L++A++G+PN GKS+L+NRL G R + +G TRD++ Sbjct: 173 --EEDV--------------LKLAIIGKPNAGKSSLVNRLSGEERTIVSDIAGTTRDAID 216 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 +K++ I DTAG+R+ S++ ESLE +V +++++++ + I++LD +QD Sbjct: 217 TIVQYKDNKYMIIDTAGIRRKSKVEESLEYYSVLRAIKTIKRADVCILMLDGKEGLTEQD 276 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 RI +V+ +NKWD+V ++ ++ + LP + I +S TG+ Sbjct: 277 KRIAGIAAEELKPIVVVVNKWDLVDKNKVSMKSMKEELYAELPFLSYAPIEFVSALTGQR 336 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 ++ I + + RI+T LN+ L+ L N PPT R ++ Y TQ+ S+PP F Sbjct: 337 TTKILEISDTIYEEYTKRISTGILNTVLKDAVLMNNPPTRKGRVVKINYATQVSSAPPKF 396 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 ++FC +P I SY RY+ N+ R F G PI + F+ Sbjct: 397 VLFCNYPELIHFSYARYIENKFREAFGFDGSPILISFE 434 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 63/125 (50%), Gaps = 6/125 (4%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + +AI+G PN GKS+L NRL ++ +V + G TRD + + I+DTAGI Sbjct: 176 VLKLAIIGKPNAGKSSLVNRLSGEERTIVSDIAGTTRDAIDTIVQYKDNKYMIIDTAGIR 235 Query: 62 DGKNCSIAKQMNDQTEL----AINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIV 117 + + + + + L I A + + ++D K G+T D I ++ PI++V Sbjct: 236 --RKSKVEESLEYYSVLRAIKTIKRADVCILMLDGKEGLTEQDKRIAGIAAEELKPIVVV 293 Query: 118 SNKMD 122 NK D Sbjct: 294 VNKWD 298 >gi|283786127|ref|YP_003365992.1| GTP-binding protein [Citrobacter rodentium ICC168] gi|282949581|emb|CBG89199.1| GTP-binding protein [Citrobacter rodentium ICC168] Length = 490 Score = 289 bits (740), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 164/478 (34%), Positives = 261/478 (54%), Gaps = 19/478 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A + G F +DT GI Sbjct: 1 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ LAI EA ++LF++D++AG+ P D AI LR + P +V+NK Sbjct: 61 -DGTEEGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIARHLRSREKPTFLVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGT-SELHSVIFKIFKQKYPNHPLE------ 173 D + + YSL EI I+A H G S L V+ P ++ Sbjct: 120 TDGLDPDQAVVDFYSLGLGEIHPIAASHGRGVLSLLEHVLLPWMDDVAPQEEVDEDAEYW 179 Query: 174 -MIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTG 232 E ++ EE P+++ + P+++A+VGRPNVGKSTL NR+LG +R++ Sbjct: 180 AQFEADENGEEEPEDDFNPQ--------DLPIKLAIVGRPNVGKSTLTNRILGEDRVVVY 231 Query: 233 SQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVL 292 G TRDS+ I + DTAG+RK +IT+++E+ +V K++Q++ +++ Sbjct: 232 DMPGTTRDSIYIPMERDEREYVLIDTAGVRKRGKITDAVEKFSVIKTLQAIEDANVVLLV 291 Query: 293 LDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIY 352 +DA QDL ++ + N+G ++V+ +NKWD +S ++ + ++ L I Sbjct: 292 IDAREGISDQDLSLLGFILNSGRSLVIVVNKWDGLSQEVK--EQVKETLDFRLGFIDFAR 349 Query: 353 INTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKY 412 ++ IS G G+ +L SV E R++T+ L + + PP + R +LKY Sbjct: 350 VHFISALHGSGVGNLFESVREAYDSSTRRVSTAMLTRIMTMAVEDHQPPLVRGRRVKLKY 409 Query: 413 ITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I +P+SYKRYL+N R + + G PIR+ F+ +NPY K Sbjct: 410 AHAGGYNPPIVVIHGNQVKDLPDSYKRYLMNYFRKSLEVMGTPIRIQFKEGENPYANK 467 >gi|52424789|ref|YP_087926.1| GTP-binding protein EngA [Mannheimia succiniciproducens MBEL55E] gi|52306841|gb|AAU37341.1| unknown [Mannheimia succiniciproducens MBEL55E] Length = 507 Score = 289 bits (740), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 171/482 (35%), Positives = 268/482 (55%), Gaps = 20/482 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG A I+G F ++DT GI DG Sbjct: 6 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHANISGYDFIVIDTGGI-DGT 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPI-IIVSNKMDT 123 + ++M +Q+ LAI EA ++LFL+D++AG+TP D I +LR++ I ++V+NK D Sbjct: 65 EEGVEEKMAEQSLLAIEEADVVLFLVDARAGLTPADIGIAQYLRQRQNKITVVVANKTDG 124 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 A + E Y L EI +I+A G ++L + +K +EN++ +E+ Sbjct: 125 IDADSHCAEFYQLGLGEIAQIAASQGRGVTQLMEDVLAPLAEKMKTDE-SAVENDENSEQ 183 Query: 184 SPKE-----NITSEGKSSVKNIS----------KPLRIAVVGRPNVGKSTLINRLLGYNR 228 E + SE + + + + K ++IA+VGRPNVGKSTL NR+LG +R Sbjct: 184 EKDEWEHEFDFNSEEDAELLDEALAEENEEPENKNIKIAIVGRPNVGKSTLTNRILGEDR 243 Query: 229 LLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCET 288 ++ G TRDSV I I DTAG+RK ++ S+E+ +V K++Q+++ Sbjct: 244 VVVYDLPGTTRDSVYIPMERDGQQYTIIDTAGVRKRGKVHLSVEKFSVIKTLQAIQDANV 303 Query: 289 TIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQI 348 ++ +DA QDL ++ + N G ++V+ +NKWD +S ++++ + L I Sbjct: 304 VLLTVDAREGISDQDLSLLGFILNAGRSLVIVVNKWDGLSQYTK--DQVKSELDRRLDFI 361 Query: 349 GDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYN 408 ++ IS G G+ +L SV E ++TTS L LQ ++ PP I R Sbjct: 362 DFARVHFISALHGSGVGNLFDSVQEAYACATKKMTTSMLTRLLQMATDEHQPPMINGRRI 421 Query: 409 RLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYI 468 +LK+ +PP +I +K+P+SYKRYL N R + + G PIR+ FQ NP+ Sbjct: 422 KLKFAHPGGYNPPIIVIHGNKIDKLPDSYKRYLSNYYRRSLKIVGSPIRLQFQEGSNPFA 481 Query: 469 KK 470 K Sbjct: 482 GK 483 >gi|332977201|gb|EGK13997.1| ribosome-associated GTPase EngA [Desmospora sp. 8437] Length = 455 Score = 289 bits (740), Expect = 6e-76, Method: Compositional matrix adjust. Identities = 154/460 (33%), Positives = 245/460 (53%), Gaps = 28/460 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNR+ +++A+V + PGITRDR+Y + +G F+++DT G+ GK Sbjct: 21 VAIVGRPNVGKSTLFNRIAGERIAIVEDKPGITRDRIYTRGDWSGRHFHVIDTGGLEFGK 80 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + + Q ELAI EA +ILF++D G+T D ++ L + N P+++ NK+D Sbjct: 81 KDEVVEHIRHQAELAIEEADVILFMVDGHDGVTSTDEEVSRILHRSNKPVVLAVNKLDDV 140 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 N YE Y L F E + IS+ H GT +L + + P+ R EE Sbjct: 141 KHHENVYEFYRLGFDEPIGISSLHGTGTGDLLDAVV----DRLPD----------REEEE 186 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 S +R++++GRPNVGKS+L+NR+LG R++ +G TRD+V Sbjct: 187 YD--------------SDTIRVSIIGRPNVGKSSLVNRILGEERVIVSPVAGTTRDAVDT 232 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + I DTAGMRK ++ E+ E+ +V ++++++ + +++LD T +QD Sbjct: 233 PFTHEGQDYVIVDTAGMRKRGKVYETTEKYSVLRALRAIERADVVLIVLDGTEGVTEQDK 292 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 R+ + G V +NKWD V + + + + I S +TG+ + Sbjct: 293 RVAGIAHDAGRGAVFVVNKWDAVEKDDQTMNRMIRDIRQEFAFMDYAPILFTSAKTGQRV 352 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 + V E+ + R++TS LN LQ + PPPT+ + R+ Y TQ+ PP F+ Sbjct: 353 RKTLPVVKEVAEQHALRVSTSVLNQVLQDAVMSTPPPTVNGKRTRIYYGTQVSVKPPVFV 412 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 +F P +I +Y RYL N+LR F G PIR+ + K Sbjct: 413 LFVNDPERIHFTYHRYLENQLREAFGFIGSPIRILLRKKK 452 >gi|145631633|ref|ZP_01787398.1| GTP-binding protein EngA [Haemophilus influenzae R3021] gi|144982767|gb|EDJ90296.1| GTP-binding protein EngA [Haemophilus influenzae R3021] Length = 504 Score = 289 bits (740), Expect = 6e-76, Method: Compositional matrix adjust. Identities = 171/483 (35%), Positives = 268/483 (55%), Gaps = 31/483 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG A I G F ++DT GI DG Sbjct: 6 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHIAGYDFIVIDTGGI-DGT 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKK-NIPIIIVSNKMDT 123 + ++M +Q+ LAI+EA ++LFL+D++AG+T D I ++LR++ N I+V+NK D Sbjct: 65 EEGVEEKMAEQSLLAIDEADIVLFLVDARAGLTAADIGIANYLRQRQNKTTIVVANKTDG 124 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 A + E Y L EI +I+A G ++L + F +K N EN++ +EE Sbjct: 125 IDADSHCAEFYQLGLGEIEQIAASQGRGVTQLMEQVLAPFAEKMENAD----ENDRTSEE 180 Query: 184 SPKE-----NITSEGKSSV----------KNISKPLRIAVVGRPNVGKSTLINRLLGYNR 228 E + SE +++ + K ++IA+VGRPNVGKSTL NR+LG +R Sbjct: 181 VQDEWEQEFDFDSEEDTALIDDALDEELEEEQDKNIKIAIVGRPNVGKSTLTNRILGEDR 240 Query: 229 LLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCET 288 ++ G TRDS+ I + DTAG+RK ++ ++E+ +V K++Q+++ Sbjct: 241 VVVFDMPGTTRDSIYIPMERDGQQYTLIDTAGVRKRGKVHLAVEKFSVIKTLQAIQDANV 300 Query: 289 TIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQI 348 ++ +DA QDL ++ + N G ++V+ +NKWD L QD++ + L + Sbjct: 301 VLLTIDARENISDQDLSLLGFILNAGRSLVIVVNKWD------GLDQDVKDRVKSELDRR 354 Query: 349 GDI----YINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIF 404 D ++ IS G G+ +L S+ E ++TTS L LQ ++ PP I Sbjct: 355 LDFIDFARVHFISALHGSGVGNLFDSIKEAYACATQKMTTSLLTRILQMATDEHQPPMIG 414 Query: 405 NRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 R +LKY +PP ++ +K+P+SYKRYL N R + + G PIR+ FQ Sbjct: 415 GRRIKLKYAHPGGYNPPIIVVHGNQMDKLPDSYKRYLSNYYRKSLKIIGSPIRLLFQEGS 474 Query: 465 NPY 467 NP+ Sbjct: 475 NPF 477 >gi|260583275|ref|ZP_05851051.1| ribosome-associated GTPase EngA [Haemophilus influenzae NT127] gi|260093682|gb|EEW77594.1| ribosome-associated GTPase EngA [Haemophilus influenzae NT127] Length = 503 Score = 289 bits (740), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 171/482 (35%), Positives = 268/482 (55%), Gaps = 30/482 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG A I G F ++DT GI DG Sbjct: 6 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHIAGYDFIVIDTGGI-DGT 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPI-IIVSNKMDT 123 + ++M +Q+ LAI+EA ++LFL+D++AG+T D I ++LR++ I ++V+NK D Sbjct: 65 EEGVEEKMAEQSLLAIDEADIVLFLVDARAGLTAADIGIANYLRQRQNKITVVVANKTDG 124 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 A + E Y L EI +I+A G ++L + F +K N EN++ +EE Sbjct: 125 IDADSHCAEFYQLGLGEIEQIAASQGRGVTQLMEQVLAPFAEKMENAD----ENDRTSEE 180 Query: 184 SPKE-----NITSEGKSSVKNI---------SKPLRIAVVGRPNVGKSTLINRLLGYNRL 229 E + SE +S+ + K ++IA+VGRPNVGKSTL NR+LG +R+ Sbjct: 181 VQDEWEQEFDFDSEEDTSLLDEALEESEEEQDKNIKIAIVGRPNVGKSTLTNRILGEDRV 240 Query: 230 LTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETT 289 + G TRDS+ I + DTAG+RK ++ ++E+ +V K++Q+++ Sbjct: 241 VVFDMPGTTRDSIYIPMERDGQQYTLIDTAGVRKRGKVHLAVEKFSVIKTLQAIQDANVV 300 Query: 290 IVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIG 349 ++ +DA QDL ++ + N G ++V+ +NKWD L QD++ + L + Sbjct: 301 LLTIDARENISDQDLSLLGFILNAGRSLVIVVNKWD------GLDQDVKDRVKSELDRRL 354 Query: 350 DI----YINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFN 405 D ++ IS G G+ +L S+ E ++TTS L LQ ++ PP I Sbjct: 355 DFIDFARVHFISALHGSGVGNLFDSIKEAYACATQKMTTSLLTRILQMATDEHQPPMIGG 414 Query: 406 RYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 R +LKY +PP ++ +K+P+SYKRYL N R + + G PIR+ FQ N Sbjct: 415 RRIKLKYAHPGGYNPPIIVVHGNQMDKLPDSYKRYLSNYYRKSLKIIGSPIRLLFQEGSN 474 Query: 466 PY 467 P+ Sbjct: 475 PF 476 >gi|119471071|ref|ZP_01613630.1| GTP-binding protein EngA [Alteromonadales bacterium TW-7] gi|119445911|gb|EAW27192.1| GTP-binding protein EngA [Alteromonadales bacterium TW-7] Length = 488 Score = 289 bits (739), Expect = 8e-76, Method: Compositional matrix adjust. Identities = 170/474 (35%), Positives = 263/474 (55%), Gaps = 18/474 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ IA+VG PNVGKSTLFNRL + + A+V + PG+TRDR YGQA +G F +VDT GI Sbjct: 1 MLPVIALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQANYDGYEFIVVDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG I +M DQ+ LAI EA ++LFL+D++ G+T D AI + LRK++ +V+NK Sbjct: 61 -DGTEEGIEIEMADQSLLAIEEADIVLFLVDARVGMTVADQAIANHLRKQDKKCFVVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTS-----ELHSVIFKIFKQKYPNHPLE-- 173 D A N E Y L EI I+A H G + L VI ++ Q + Sbjct: 120 TDGIDADSNCAEFYQLSLGEIHHIAAAHGRGITLLLEHTLQPVIAELAAQDEEVADDDEE 179 Query: 174 MIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGS 233 +I+ EE ++ + + KP+++A++GRPNVGKSTL NR+LG R++ Sbjct: 180 LID---LYEEGEGDDTDHQAFAD-----KPVKLAIIGRPNVGKSTLTNRILGEERVIVYD 231 Query: 234 QSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLL 293 G TRDS+ I + DTAG+RK ++++ +E+ +V K++Q++ C ++++ Sbjct: 232 MPGTTRDSIYIPMTRNEKEYVLIDTAGVRKRKKVSDVVEKFSVIKTLQAIEDCNVVLLVV 291 Query: 294 DATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYI 353 DA QDL ++ N+G ++V+A+NKWD + D + ++T+ + L I + Sbjct: 292 DARDGISDQDLSLLGFALNSGRSLVIAVNKWDGLDDYVK--DRIKTELDRRLGFIDFARL 349 Query: 354 NTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYI 413 + IS G G+ L SV E + RI+T+ L + Q + PP + R +LKY Sbjct: 350 HFISALHGTGVGHLFESVDEAYESATKRISTAMLRRIMDMAQADHQPPLVRGRRVKLKYA 409 Query: 414 TQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 +PP +I + +P+SYKRYL+N R + G PI++ F+ NP+ Sbjct: 410 HAGGYNPPRIVIHGNQVHDLPDSYKRYLMNYYRKALKIMGTPIKIEFREGDNPF 463 >gi|269962406|ref|ZP_06176756.1| GTP-binding protein [Vibrio harveyi 1DA3] gi|269832902|gb|EEZ87011.1| GTP-binding protein [Vibrio harveyi 1DA3] Length = 498 Score = 289 bits (739), Expect = 8e-76, Method: Compositional matrix adjust. Identities = 169/474 (35%), Positives = 268/474 (56%), Gaps = 10/474 (2%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGV-IFNIVDTAG 59 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YGQA + F ++DT G Sbjct: 1 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQARLGEEHEFIVIDTGG 60 Query: 60 IADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 I DG + +M Q+ AI+EA ++LFL+D +AG+TP D AI + LRK P ++V N Sbjct: 61 I-DGTEEGVETKMAQQSLAAIDEADVVLFLVDGRAGLTPSDEAIAAHLRKIEKPAMLVVN 119 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLG-TSELHSVIFKIFKQKYPNHPLE-MIEN 177 K+D A + + L ++ +I+A H G T+ L + F + E IE+ Sbjct: 120 KIDGIDADAACADFWQLGVDDMYQIAAAHGRGVTALLERALAPFFDDLLASESEEGEIED 179 Query: 178 --NKRNEESPKENITSE-GKSSVKNI-SKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGS 233 +EE E+ T E ++ K + +P+++A++GRPNVGKSTL NR+LG R++ Sbjct: 180 LTEFEDEELAVEDYTEEDAEAEFKRLQDQPIKLAIIGRPNVGKSTLTNRILGEERVVVYD 239 Query: 234 QSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLL 293 G TRDS+ I + DTAG+R+ RI E++E+ +V K++++V ++++ Sbjct: 240 MPGTTRDSIYIPMERDGREYVLIDTAGVRRRGRINETVEKFSVVKTLKAVEDANVVLLVI 299 Query: 294 DATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYI 353 DA QDL ++ N G ++VLA+NKWD + + ++ ++++ + + L + I Sbjct: 300 DARENISDQDLSLLGFALNAGRSIVLAVNKWDGLDN--DVKENVKKELDRRLGFVDFARI 357 Query: 354 NTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYI 413 + IS G G+ L S+ E K TR+ TS L ++ + PP + R +LKY Sbjct: 358 HFISALHGTGVGHLFESIQEAYKSATTRVGTSVLTRIMKMATDDHQPPMVRGRRIKLKYA 417 Query: 414 TQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 +PP ++ +P+SYKRYL+N R + + G PIR+ FQ+S NPY Sbjct: 418 HAGGYNPPIVVVHGNMVRDLPDSYKRYLMNYFRKSLEIMGTPIRINFQNSDNPY 471 >gi|256823051|ref|YP_003147014.1| small GTP-binding protein [Kangiella koreensis DSM 16069] gi|256796590|gb|ACV27246.1| small GTP-binding protein [Kangiella koreensis DSM 16069] Length = 467 Score = 288 bits (738), Expect = 9e-76, Method: Compositional matrix adjust. Identities = 166/470 (35%), Positives = 264/470 (56%), Gaps = 25/470 (5%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ IA+VG PNVGKSTLFNRL K + A+V N PG+TRDR YGQA + G F +VDT GI Sbjct: 1 MLPVIALVGRPNVGKSTLFNRLTKSRDALVANLPGLTRDRQYGQATLKGQKFIVVDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 A G I M Q+ LAI EA+++LFL+D++ G+T D + LR++N PII++ NK Sbjct: 61 A-GDEEGIDGLMAGQSLLAITEANIVLFLVDARTGMTAADEFVADHLRRQNKPIIVLVNK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D A + YSL ++ ++ ++A H G + L IF +E+N Sbjct: 120 VDGIHADAALSDYYSLGYQTVLPLAAAHGRGVNTLVDTIFDELH----------LESNDE 169 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 ++ E ++ L++A+VGRPNVGKSTL+NR LG R++ G TRD Sbjct: 170 DQLIGYEK------------AQGLKLAIVGRPNVGKSTLVNRFLGEERVVVYDLPGTTRD 217 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ I ++ + DTAG+R+ ++ E++E+ +V K++Q++ +I+++DA P Sbjct: 218 SIYIEMERRDKKYTLIDTAGVRRRGKVKETVEKFSVLKTLQAIDDSNVSIMVMDAREPIT 277 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 QDL ++ + ++G ++V+A+NKWD ++++ ++ + + L I I+ IS Sbjct: 278 DQDLSLISYIIDSGRSMVIAINKWDGMTEEQR--DTVKHEIDRRLGFIDFARIHFISALH 335 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G + L SV E + ++ S L L++ ++ PPT+ R +L+Y +P Sbjct: 336 GSNVGHLWESVDEAWASAQVEMSASKLTRLLEEASEKHQPPTVRGRRVKLRYAHPGGHNP 395 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 P +I +K+PESYKR+LIN R L G PIR+ + NP+ K Sbjct: 396 PLIVIHGNQCSKLPESYKRFLINFFRDKLKLIGTPIRLELKEGDNPFKGK 445 >gi|332305588|ref|YP_004433439.1| ribosome-associated GTPase EngA [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172917|gb|AEE22171.1| ribosome-associated GTPase EngA [Glaciecola agarilytica 4H-3-7+YE-5] Length = 482 Score = 288 bits (738), Expect = 9e-76, Method: Compositional matrix adjust. Identities = 160/467 (34%), Positives = 266/467 (56%), Gaps = 11/467 (2%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YGQA G+ F +VDT GI Sbjct: 1 MLPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQANYEGLQFIVVDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + G I M +Q+ +AI+EA ++LFL+D++ G+T D I LRK+N + +V+NK Sbjct: 61 S-GDEQGIDMAMANQSLMAIDEADVVLFLVDARVGLTGADQGIAEHLRKQNKSVYVVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D + ++L ++ +I+A H G ++L + +++P+ +++ E + Sbjct: 120 VDGIDGDSESADFFALGLGDVNQIAAAHGRGVTQLLTHTLMPLAEQFPD--MQVPEEEEV 177 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 +E E K K ++ P+++A+VG+PNVGKSTL NR+LG R++ Q G TRD Sbjct: 178 TQEQDAE------KQLEKLLASPIKLAIVGKPNVGKSTLTNRILGEERVVVYDQPGTTRD 231 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ I + DTAG+R+ I+E++E+ ++ K++Q++ ++++DA Sbjct: 232 SIFIPMERDGREYVLIDTAGVRRRRSISEAVEKFSIVKTLQAIEEANVVLLVIDAQEGIT 291 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 QDL ++ V N+G ++VLA+NKWD + DK ++ +++ + + L I ++ IS Sbjct: 292 DQDLSLLGFVLNSGRSLVLAVNKWDGL-DK-DVKDEIKRELDRRLGFIDFARLHFISALH 349 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G + L SV E RI TS L + Q + PP + R ++KY +P Sbjct: 350 GTNVGHLFESVQEAYNSATKRINTSMLTRIMDMAQADHQPPVVRGRRVKMKYAHAGGYNP 409 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 P +I +P+SYKRY++N R + + G PI++ F+ NPY Sbjct: 410 PIIVIHGNQVKDLPDSYKRYMMNYFRKSLKVMGTPIKVEFREGANPY 456 >gi|156973384|ref|YP_001444291.1| GTP-binding protein EngA [Vibrio harveyi ATCC BAA-1116] gi|166225933|sp|A7MZE5|DER_VIBHB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|156524978|gb|ABU70064.1| hypothetical protein VIBHAR_01071 [Vibrio harveyi ATCC BAA-1116] Length = 498 Score = 288 bits (738), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 168/474 (35%), Positives = 269/474 (56%), Gaps = 10/474 (2%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGV-IFNIVDTAG 59 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YGQA + F ++DT G Sbjct: 1 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQARLGEEHEFIVIDTGG 60 Query: 60 IADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 I DG + +M +Q+ AI+EA ++LFL+D +AG+TP D AI + LRK P ++V N Sbjct: 61 I-DGTEEGVETKMAEQSLAAIDEADVVLFLVDGRAGLTPSDEAIAAHLRKIEKPAMLVVN 119 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLG-TSELHSVIFKIFKQKYPNHPLE-MIEN 177 K+D A + + L ++ +I+A H G T+ L + F + + IE+ Sbjct: 120 KIDGIDADAACADFWQLGVDDMYQIAAAHGRGVTALLERALAPFFDDLLASESEDGEIED 179 Query: 178 --NKRNEESPKENITSE-GKSSVKNI-SKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGS 233 +EE E+ T E ++ K + +P+++A++GRPNVGKSTL NR+LG R++ Sbjct: 180 LTEFEDEELAVEDYTEEDAEAEFKRLQDQPIKLAIIGRPNVGKSTLTNRILGEERVVVYD 239 Query: 234 QSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLL 293 G TRDS+ I + DTAG+R+ RI E++E+ +V K++++V ++++ Sbjct: 240 MPGTTRDSIYIPMERDGREYVLIDTAGVRRRGRINETVEKFSVVKTLKAVEDANVVLLVI 299 Query: 294 DATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYI 353 DA QDL ++ N G ++VLA+NKWD + +++ ++++ + + L + I Sbjct: 300 DARENISDQDLSLLGFALNAGRSIVLAVNKWDGLDNEVK--ENVKKELDRRLGFVDFARI 357 Query: 354 NTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYI 413 + IS G G+ L S+ E K TR+ TS L ++ + PP + R +LKY Sbjct: 358 HFISALHGTGVGHLFESIQEAYKSATTRVGTSVLTRIMKMATDDHQPPMVRGRRIKLKYA 417 Query: 414 TQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 +PP ++ +P+SYKRYL+N R + + G PIR+ FQ+S NPY Sbjct: 418 HAGGYNPPIVVVHGNMVRDLPDSYKRYLMNYFRKSLEIMGTPIRINFQNSDNPY 471 >gi|323491635|ref|ZP_08096814.1| GTP-binding protein Der [Vibrio brasiliensis LMG 20546] gi|323314211|gb|EGA67296.1| GTP-binding protein Der [Vibrio brasiliensis LMG 20546] Length = 494 Score = 288 bits (738), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 167/473 (35%), Positives = 267/473 (56%), Gaps = 6/473 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YGQA + F ++DT GI Sbjct: 1 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGEHEFIVIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M Q+ AI+EA ++LF++D +AG+T D AI S LRK P ++V NK Sbjct: 61 -DGTEEGVETKMAQQSLAAIDEADVVLFMVDGRAGLTAADEAIASHLRKIEKPSMLVVNK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN--N 178 +D A E + L + + +I+A H G + L + F +K IE+ + Sbjct: 120 VDGIDADAASAEFWQLGVENMYQIAAAHGRGVTALIDLALNPFAEKLMEETSGEIEDLTD 179 Query: 179 KRNEESPKENITSEGKSSVKNI-SKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGI 237 +E+ + E + K + +P+++A++GRPNVGKSTL NR+LG R++ G Sbjct: 180 FIDEDEKLDYSEEEAEEEFKRLQDQPIKLAIIGRPNVGKSTLTNRILGEERVVVYDMPGT 239 Query: 238 TRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATI 297 TRDS+ I + DTAG+R+ +RI E++E+ +V K++++V ++++DA Sbjct: 240 TRDSIYIPMERDGREYVLIDTAGVRRRTRINETVEKFSVVKTLKAVEDANVVMLVIDARE 299 Query: 298 PFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTIS 357 QDL ++ N G ++V+A+NKWD + +++ + ++ + + L + I+ IS Sbjct: 300 NISDQDLSLLGFALNAGRSIVIAVNKWDGLD--MDVKEQVKKELDRRLGFVDFARIHFIS 357 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 G G+ L SV E K TR+ TS L ++ + PP + R +LKY Sbjct: 358 ALHGTGVGHLFESVQEAYKSATTRVGTSVLTRIMKMATDDHQPPLVRGRRVKLKYAHAGG 417 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I N++P+SYKRYL+N R + + G PIR+ FQ+S NP+ K Sbjct: 418 YNPPIVVIHGNQVNELPDSYKRYLMNYYRKSLEIMGTPIRIQFQNSDNPFEGK 470 >gi|257125220|ref|YP_003163334.1| GTP-binding protein EngA [Leptotrichia buccalis C-1013-b] gi|257049159|gb|ACV38343.1| small GTP-binding protein [Leptotrichia buccalis C-1013-b] Length = 441 Score = 288 bits (738), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 154/461 (33%), Positives = 253/461 (54%), Gaps = 30/461 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +T+AIVG PNVGKSTLFN+LV ++++V + PG+TRDRLY + +G F +VDT G+ Sbjct: 1 MKHTVAIVGRPNVGKSTLFNKLVGDRLSIVKDEPGVTRDRLYREIEWSGKEFILVDTGGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + ++ Q ++AI+EA +I+FL+D KAGIT D + + LR+++ +++ NK Sbjct: 61 EPRTEDFMMGKIKQQAQVAIDEADVIIFLVDGKAGITGLDEDVATVLRRQDKKVVVAVNK 120 Query: 121 MDTRIA-QRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNK 179 +D + Q N +E Y L F+E++ IS EH +L + + F+ K Sbjct: 121 IDNYLRDQENIFEFYGLGFEEVIGISGEHKTNLGDLLDAVIEKFEDK------------- 167 Query: 180 RNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITR 239 +K I L IA++GRPN GKS+L+N+LL R + +G TR Sbjct: 168 ----------------KIKQIEDGLNIAILGRPNAGKSSLVNKLLNEERSIVSDIAGTTR 211 Query: 240 DSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPF 299 DS+ S + + DTAG+R+ S++ + +E ++ ++M++++ + +++LDAT Sbjct: 212 DSIDSSLRYNGETYTLIDTAGIRRKSKVEDDIEYYSILRAMKAIKRADVCVLMLDATELL 271 Query: 300 EKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGR 359 QD RI ++ +++A+NKWD++ N +++ +L + I TIS Sbjct: 272 TDQDKRIAGMIYEERKPIIIAVNKWDLIEKNNNSVKEFTELVKADLAFLDYAPIVTISAL 331 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 TG+ +++ IN+ + +ITT LN L + QNP PT R ++ Y TQ+ + Sbjct: 332 TGKRTLNILEQAKFINEEYHKKITTGLLNQILAEMIAQNPVPTRKGRAVKINYATQVSQA 391 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCF 460 PP F+ F P I SY+RY+ N+LR F G PI + F Sbjct: 392 PPKFVFFANNPELIHFSYQRYIENKLREYFGFEGCPIDIVF 432 >gi|27363891|ref|NP_759419.1| GTP-binding protein Der [Vibrio vulnificus CMCP6] gi|31340067|sp|Q8DF02|DER_VIBVU RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|27360008|gb|AAO08946.1| GTP-binding protein EngA [Vibrio vulnificus CMCP6] Length = 496 Score = 288 bits (738), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 163/472 (34%), Positives = 269/472 (56%), Gaps = 8/472 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YGQA + F ++DT GI Sbjct: 1 MIPVVALVGRPNVGKSTLFNRLTRSRDALVADFPGLTRDRKYGQAKVGEHDFIVIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ AI EA ++LF++D +AG+TP D AI + LRK ++V NK Sbjct: 61 -DGSEEGVETKMAEQSLAAIREADVVLFMVDGRAGLTPSDEAIAAHLRKIEKATMLVVNK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL-HSVIFKIFKQKYPNHPLEMIEN-- 177 +D A + + L E+ +I+A H G + L + F + IE+ Sbjct: 120 VDGIDADAASADFWQLGVDEMYQIAAAHGRGVTALIERALDPFFDNLLSANNEGEIEDLT 179 Query: 178 NKRNEESPKENITSE-GKSSVKNI-SKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQS 235 + +E++ ++ + E + S+K + +P+++A++GRPNVGKSTL NR+LG R++ Sbjct: 180 DMEDEDAEQQEYSEEDAEESLKRLQDQPIKLAIIGRPNVGKSTLTNRILGEERVVVYDMP 239 Query: 236 GITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDA 295 G TRDS+ I + DTAG+R+ ++ E++E+ +V K++++V ++++DA Sbjct: 240 GTTRDSIYIPMERDGREYVLIDTAGVRRRGKVHETVEKFSVVKTLKAVEDANVVLLVIDA 299 Query: 296 TIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINT 355 QDL ++ N G ++VLA+NKWD + +++ ++++ + + L + I+ Sbjct: 300 RENISDQDLSLLGFALNAGRSIVLAVNKWDGLDNEVK--ENVKKELDRRLGFVDFARIHF 357 Query: 356 ISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQ 415 IS G G+ L SV E + TR+ TS L ++ + PP + R +LKY Sbjct: 358 ISALHGTGVGHLFESVQEAYRSATTRVGTSVLTRIMKMATEDHQPPMVRGRRVKLKYAHA 417 Query: 416 IQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 +PP +I ++P+SYKRYL+N R + + G PIR+ FQ+S NP+ Sbjct: 418 GGYNPPIVVIHGNQVRELPDSYKRYLMNYFRKSLDIMGTPIRIQFQNSDNPF 469 >gi|148284571|ref|YP_001248661.1| GTP-binding protein EngA [Orientia tsutsugamushi str. Boryong] gi|229784136|sp|A5CDT2|DER_ORITB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|146740010|emb|CAM80087.1| GTP-binding protein [Orientia tsutsugamushi str. Boryong] Length = 454 Score = 288 bits (738), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 174/472 (36%), Positives = 257/472 (54%), Gaps = 33/472 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQA-IINGVIFNIVDTAGIADG 63 +A+VG PNVGKSTLFNRL ++ ++V + PGITRDR Y +A + + +I +VDT G+ Sbjct: 6 VALVGKPNVGKSTLFNRLSLREKSIVHDLPGITRDRKYAKANLFSDLI--VVDTPGLEFA 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKN--IPIIIVSNKM 121 S+ M Q+ +AINEA++I F++D+ GI P D + +RK N I+V NK Sbjct: 64 AAGSLEFNMMQQSLVAINEANIICFVVDAITGILPIDEECANLIRKHNKQSSTILVINKT 123 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 + I Y Y L F E + ISA+H G EL +I I Sbjct: 124 EKPIILDKSY--YKLGFSESICISAKHGQGIYELGDIIQNIL------------------ 163 Query: 182 EESPKENI--TSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITR 239 E K N+ T+ K L++A+VGRPN GKST IN +L R+LTG +SG+TR Sbjct: 164 SEDKKINVLTTTNTKCEYNQQCPELQLAIVGRPNCGKSTFINAILNEERVLTGPESGLTR 223 Query: 240 DSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPF 299 +SV + W + I + DTAG+RK + +T+S E +V + +++R IV++DAT Sbjct: 224 NSVEVDWKYCGQLIRLVDTAGVRKKNAVTQSCELLSVNDTFKTIRFANIVIVMIDATRGL 283 Query: 300 EKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGR 359 E+QDL I+ N G +VL +NK D++ K ++L ++ QI I IS + Sbjct: 284 EQQDLSIISYAVNEGRGIVLVVNKCDLIKKKEEFQKELNRLVAYSVFQIKGINPIYISAK 343 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYN---RLKYITQI 416 L+ ++ + W+ R+TT LN WL K P P F + ++KY TQ Sbjct: 344 EKFNLESVLQKCVLTYASWQKRVTTGTLNQWLAKAMSNRPLP--FQSHGKRVKIKYCTQT 401 Query: 417 QSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSL-SGIPIRMCFQSSKNPY 467 ++ PP+ +FC I ESYKRYLIN ++NF + +G+P+R+ F KNPY Sbjct: 402 KARPPTIKLFCNNIESIDESYKRYLINNFKLNFDIAAGVPVRLSFVKGKNPY 453 >gi|88858476|ref|ZP_01133118.1| GTP-binding protein EngA [Pseudoalteromonas tunicata D2] gi|88820093|gb|EAR29906.1| GTP-binding protein EngA [Pseudoalteromonas tunicata D2] Length = 492 Score = 288 bits (738), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 170/474 (35%), Positives = 264/474 (55%), Gaps = 15/474 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ IA+VG PNVGKSTLFNRL + + A+V + PG+TRDR YGQA + F +VDT GI Sbjct: 1 MLPVIALVGRPNVGKSTLFNRLTRSRDALVADFPGLTRDRKYGQAKYDEYEFIVVDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNI--PIIIVS 118 DG I +M +Q+ LAI EA +++FL+D++AG+T D AI + LRK N I +V+ Sbjct: 61 -DGSEEGIELEMAEQSLLAIEEADVVMFLVDARAGMTAADQAIANHLRKLNTQKSIFLVA 119 Query: 119 NKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL-----HSVIFKIFKQKYPNHPLE 173 NK+D A + E Y L E+ +I+A H G ++L VI + + LE Sbjct: 120 NKIDGLDADSSCAEFYQLALGEVYQIAASHGRGVTQLLETALQPVIEEFNRLNGVEEELE 179 Query: 174 MIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGS 233 I EE +E + S KP+++A++GRPNVGKSTL NR+LG R++ Sbjct: 180 QINEFDEFEEGAEEPDEYQEFSD-----KPIKLAIIGRPNVGKSTLTNRILGEERVIVYD 234 Query: 234 QSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLL 293 G TRDS+ I + + DTAG+RK ++++ E+ +V K+++++ ++++ Sbjct: 235 MPGTTRDSIYIPMTRNDQEYVLIDTAGVRKRKKVSDVAEKFSVIKTLKAIEDANVVLLVV 294 Query: 294 DATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYI 353 DA QDL ++ N+G ++V+A+NKWD + + + ++T+ + L I I Sbjct: 295 DAREGISDQDLSLLGFALNSGRSLVIAVNKWDGLDEYVK--TRIKTELDRRLGFIDFARI 352 Query: 354 NTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYI 413 + IS G G+ L SV E + RI+T+ L + Q + PP + R +LKY Sbjct: 353 HFISALHGTGVGHLFESVDEAYQSATKRISTAMLRRIMDMAQSDHQPPLVAGRRVKLKYA 412 Query: 414 TQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 +PP +I N +P+SYKRYL+N R + + G PI++ F+ NP+ Sbjct: 413 HAGGYNPPIIVIHGNQLNDLPDSYKRYLMNYYRKSLKIMGTPIKIEFREGDNPF 466 >gi|315123111|ref|YP_004065117.1| GTP-binding protein EngA [Pseudoalteromonas sp. SM9913] gi|315016872|gb|ADT70209.1| GTP-binding protein EngA [Pseudoalteromonas sp. SM9913] Length = 489 Score = 288 bits (737), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 168/473 (35%), Positives = 267/473 (56%), Gaps = 16/473 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ IA+VG PNVGKSTLFNRL + + A+V + PG+TRDR YGQA +G F +VDT GI Sbjct: 1 MLPVIALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQANYDGFEFIVVDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG I +M DQ+ LAI EA ++LFL+D++ G+T D AI + LRK+ +V+NK Sbjct: 61 -DGSEEGIETEMADQSLLAIEEADIVLFLVDARVGMTVADQAIANHLRKQEKKCFVVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLG-TSELHSVIFKIFKQKYPNHPLEMIENNK 179 D A N E Y L E+ I+A H G T L + + + L ++ + Sbjct: 120 TDGIDADSNCAEFYQLSLGEVHHIAAAHGRGITLLLEQTLQPVIAE------LAALDEDV 173 Query: 180 RNEESPKENITSEGKSSVKN----ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQS 235 +++ ++ EG+ + KP+++A++GRPNVGKSTL NR+LG +R++ Sbjct: 174 ADDDEELIDLYQEGEEDDTDHQAFADKPVKLAIIGRPNVGKSTLTNRILGEDRVIVYDMP 233 Query: 236 GITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDA 295 G TRDS+ I + + DTAG+RK ++++ +E+ +V K++Q++ C ++++DA Sbjct: 234 GTTRDSIYIPMTRNDKEYILIDTAGVRKRKKVSDVVEKFSVIKTLQAIEDCNVVLLVVDA 293 Query: 296 TIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQD-LRTKAIKNLPQIGDIYIN 354 QDL ++ N+G ++V+A+NKWD + N ++D ++T+ + L I ++ Sbjct: 294 RDGISDQDLSLLGFALNSGRSLVIAVNKWDGLD---NYVKDRIKTELDRRLGFIDFARLH 350 Query: 355 TISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYIT 414 IS G G+ L SV E + RI+T+ L + Q + PP + R +LKY Sbjct: 351 FISALHGTGVGHLFESVDEAYESATKRISTAMLRRIMDMAQADHQPPLVRGRRVKLKYAH 410 Query: 415 QIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 +PP +I + +P+SYKRYL+N R + G PI++ F+ NP+ Sbjct: 411 AGGYNPPRIVIHGNQVHDLPDSYKRYLMNYYRKALKIMGTPIKIEFREGDNPF 463 >gi|153216257|ref|ZP_01950357.1| GTP-binding protein [Vibrio cholerae 1587] gi|124114402|gb|EAY33222.1| GTP-binding protein [Vibrio cholerae 1587] Length = 494 Score = 288 bits (737), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 170/473 (35%), Positives = 268/473 (56%), Gaps = 6/473 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YGQA + F ++DT GI Sbjct: 1 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGEHEFIVIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M Q+ AI+EA ++LF++D +AG+T D AI LR+ P I+V NK Sbjct: 61 -DGSEEGVETKMAQQSLAAIDEADVVLFMVDGRAGLTVADEAIAQHLRRIEKPAILVVNK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHP--LEMIENN 178 +D A E + L ++ +I+A H G L F ++ + LE + N Sbjct: 120 VDGIDADAASAEFWQLGMDQMYQIAAAHGRGVGALIDRALNPFAEQMESEQAQLEDLTNE 179 Query: 179 KRNEESPKENITSEGKSSVKNISK-PLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGI 237 + EE P E E ++ K + P+++A++GRPNVGKSTL NR+LG R++ G Sbjct: 180 EDPEEEPLEYSEEEAEAEYKRLQDLPIKLAIIGRPNVGKSTLTNRILGEERVVVYDMPGT 239 Query: 238 TRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATI 297 TRDS+ I + DTAG+R+ RI E++E+ +V K++Q++ ++++DA Sbjct: 240 TRDSIYIPMKRDEREYVLIDTAGVRRRKRINETVEKFSVVKTLQAIEDANVVLLVVDARE 299 Query: 298 PFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTIS 357 QDL ++ N+G ++V+A+NKWD +S L++ + ++ + + L + I+ IS Sbjct: 300 NISDQDLSLLGFALNSGRSIVIAVNKWDGLS--LDVKEHVKKELDRRLGFVDFARIHFIS 357 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 G G+ L SV E + TR+ TS L ++ + PP + R +LKY Sbjct: 358 ALHGTGVGHLFESVQEAYRSATTRVGTSVLTRIMKMATDDHQPPMVRGRRVKLKYAHAGG 417 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I N++P+SYKRYL+N R + + G PIR+ FQ+S+NP+ K Sbjct: 418 YNPPIIVIHGNQVNELPDSYKRYLMNYYRKSLEIMGTPIRIQFQNSENPFEGK 470 >gi|153800614|ref|ZP_01955200.1| GTP-binding protein [Vibrio cholerae MZO-3] gi|153824529|ref|ZP_01977196.1| GTP-binding protein [Vibrio cholerae MZO-2] gi|229513098|ref|ZP_04402564.1| GTP-binding protein EngA [Vibrio cholerae TMA 21] gi|229523415|ref|ZP_04412822.1| GTP-binding protein EngA [Vibrio cholerae TM 11079-80] gi|229525408|ref|ZP_04414813.1| GTP-binding protein EngA [Vibrio cholerae bv. albensis VL426] gi|229530107|ref|ZP_04419497.1| GTP-binding protein EngA [Vibrio cholerae 12129(1)] gi|254225026|ref|ZP_04918640.1| GTP-binding protein [Vibrio cholerae V51] gi|124123903|gb|EAY42646.1| GTP-binding protein [Vibrio cholerae MZO-3] gi|125622413|gb|EAZ50733.1| GTP-binding protein [Vibrio cholerae V51] gi|149741747|gb|EDM55776.1| GTP-binding protein [Vibrio cholerae MZO-2] gi|229333881|gb|EEN99367.1| GTP-binding protein EngA [Vibrio cholerae 12129(1)] gi|229338989|gb|EEO04006.1| GTP-binding protein EngA [Vibrio cholerae bv. albensis VL426] gi|229339778|gb|EEO04793.1| GTP-binding protein EngA [Vibrio cholerae TM 11079-80] gi|229349991|gb|EEO14945.1| GTP-binding protein EngA [Vibrio cholerae TMA 21] gi|327483547|gb|AEA77954.1| GTP-binding protein EngA [Vibrio cholerae LMA3894-4] Length = 494 Score = 288 bits (737), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 169/473 (35%), Positives = 267/473 (56%), Gaps = 6/473 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YGQA + F ++DT GI Sbjct: 1 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGEHEFIVIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M Q+ AI+EA ++LF++D +AG+T D AI LR+ P I+V NK Sbjct: 61 -DGSEEGVETKMAQQSLAAIDEADVVLFMVDGRAGLTVADEAIAQHLRRIEKPAILVVNK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHP--LEMIENN 178 +D A E + L ++ +I+A H G L F ++ + LE + N Sbjct: 120 VDGIDADAASAEFWQLGMDQMYQIAAAHGRGVGALIDRALNPFAEQMESEQAQLEDLTNE 179 Query: 179 KRNEESPKENITSEGKSSVKNISK-PLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGI 237 + EE E E ++ K + P+++A++GRPNVGKSTL NR+LG R++ G Sbjct: 180 EDPEEEQLEYSEEEAEAEYKRLQDLPIKLAIIGRPNVGKSTLTNRILGEERVVVYDMPGT 239 Query: 238 TRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATI 297 TRDS+ I + DTAG+R+ RI E++E+ +V K++Q++ ++++DA Sbjct: 240 TRDSIYIPMKRDEREYVLIDTAGVRRRKRINETVEKFSVVKTLQAIEDANVVLLVVDARE 299 Query: 298 PFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTIS 357 QDL ++ N+G ++V+A+NKWD +S L++ + ++ + + L + I+ IS Sbjct: 300 NISDQDLSLLGFALNSGRSIVIAVNKWDGLS--LDVKEHVKKELDRRLGFVDFARIHFIS 357 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 G G+ L SV E + TR+ TS L ++ + PP + R +LKY Sbjct: 358 ALHGTGVGHLFESVQEAYRSATTRVGTSVLTRIMKMATDDHQPPMVRGRRVKLKYAHAGG 417 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I N++P+SYKRYL+N R + + G PIR+ FQ+S+NP+ K Sbjct: 418 YNPPIIVIHGNQVNELPDSYKRYLMNYYRKSLEIMGTPIRIQFQNSENPFEGK 470 >gi|308050453|ref|YP_003914019.1| ribosome-associated GTPase EngA [Ferrimonas balearica DSM 9799] gi|307632643|gb|ADN76945.1| ribosome-associated GTPase EngA [Ferrimonas balearica DSM 9799] Length = 495 Score = 288 bits (737), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 163/474 (34%), Positives = 262/474 (55%), Gaps = 7/474 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI +A+VG PNVGKSTLFNRL + A+V + PG+TRDR YGQA + G F +VDT GI Sbjct: 1 MIPVVALVGRPNVGKSTLFNRLTGTRDALVADFPGLTRDRKYGQANLAGHDFIVVDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG I +M +Q+ AI EA ++LFL+D++AG+T D AI+ LR + ++V+NK Sbjct: 61 -DGTEEGIETKMAEQSLRAIEEADVVLFLVDARAGLTAADEAISKHLRSREKRTLLVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEM---IEN 177 D A E Y+L + EI +I+A + G S L + E+ I+ Sbjct: 120 TDGIDADAAVGEFYALGYGEIHQIAAAQNRGVSSLIHYALAPMAETLKEEAGELDEEIDE 179 Query: 178 NKRNEESPKENITSEGKSSVKNI-SKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSG 236 + + E P++ + +S + + + P+++A++G+PNVGKSTL NR+LG R++ G Sbjct: 180 DAWDVEEPEQLTEEDAESEAERLRALPIKLAIIGKPNVGKSTLTNRILGEERVVVYDMPG 239 Query: 237 ITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDAT 296 TRDS+ I + DTAG+R+ + E++E+ +V K++Q++ ++++DA Sbjct: 240 TTRDSIYIPMERDGREYVLIDTAGVRRRKSVYEAVEKFSVIKTLQAIEDANVVLLVVDAR 299 Query: 297 IPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTI 356 QDL ++ N G A+V+A+NKWD + + + +D++ + + L I ++ I Sbjct: 300 EGLSDQDLSLLGFTLNAGRALVVAVNKWDGLD--MTVKEDIKRELDRRLGFIDFAKLHFI 357 Query: 357 SGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQI 416 S G G+ L SV E R +TS L + Q + PP + R +LKY Sbjct: 358 SALHGTGVGHLFESVQEAYDSATRRCSTSLLTKIMHMAQDDHQPPMVRGRRVKLKYAHAG 417 Query: 417 QSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP ++ +P++YKRYL+N R + ++ G PI++ FQ NP+ K Sbjct: 418 GYNPPIIVVHGNQVRDLPDAYKRYLMNYYRRSLNIVGTPIKVLFQEGANPFDGK 471 >gi|312173198|emb|CBX81453.1| GTP-binding protein engA [Erwinia amylovora ATCC BAA-2158] Length = 499 Score = 288 bits (737), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 169/478 (35%), Positives = 260/478 (54%), Gaps = 11/478 (2%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A I G F +DT GI Sbjct: 1 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ LAI EA ++LF++D++AG+ P D AI LR + P IV+NK Sbjct: 61 -DGNEEGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADTAIAKHLRARQKPTFIVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLG-TSELHSVIFKIFKQKYPNHPLEMIENNK 179 D A + +SL EI I+A H G TS L V+ + P L E N+ Sbjct: 120 TDGLDADSAVVDFWSLGLGEIHPIAASHGRGVTSLLELVLLPWMDEVAPERELTEEEVNE 179 Query: 180 -------RNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTG 232 E T++ + + P+++A+VGRPNVGKSTL NR+LG +R++ Sbjct: 180 AYWAELAAKEAKASGEDTADAEDDFNPLDLPIKLAIVGRPNVGKSTLTNRILGEDRVVVF 239 Query: 233 SQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVL 292 G TRDS+ I + DTAG+RK ++TE++E+ +V K+++++ +++ Sbjct: 240 DMPGTTRDSIYIPMERDGREYILIDTAGVRKRGKVTETVEKFSVIKTLKAIEDANVVMLV 299 Query: 293 LDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIY 352 +DA QDL ++ + N+G ++V+ +NKWD +S ++ +++ L I Sbjct: 300 IDAHEGISDQDLSLLGFILNSGRSLVIVVNKWDGLSQEVR--DEVKEALDYRLGFIDFAR 357 Query: 353 INTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKY 412 I+ IS G G+ +L SV E R+ TS L + + PP + +R +LKY Sbjct: 358 IHFISALHGSGVGNLFESVTEAYDCSTRRVNTSMLTRIMHMAADDHQPPLVRSRRVKLKY 417 Query: 413 ITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I +P+SYKRYL+N R + + G PIR+ F+ NPY K Sbjct: 418 AHAGGYNPPIVVIHGNQVKDLPDSYKRYLMNYFRRSLDIMGTPIRIQFKEGDNPYEGK 475 >gi|294340463|emb|CAZ88844.1| GTPase involved in ribosome synthesis and maintenance [Thiomonas sp. 3As] Length = 465 Score = 288 bits (737), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 162/471 (34%), Positives = 247/471 (52%), Gaps = 10/471 (2%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +++VG PNVGKSTLFNR+ + + A+V + PG+TRDR YG + +VDT G Sbjct: 1 MTPIVSLVGRPNVGKSTLFNRMTRSRDAIVADMPGLTRDRHYGMLRMADRPVIVVDTGGF 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + I QM QT AI E+ L++FL+D + G++P D I + LRK PI++ NK Sbjct: 61 EPVVDTGIVHQMARQTRQAIAESDLVVFLVDLRTGLSPQDLHIAAELRKTGKPILLAVNK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + R E + L E ISA H +L I Q P+ P E I + Sbjct: 121 AEGRHGHPALAEFHELGLGEPFSISAAHGDSVPDLLDRIL----QALPSEPSEGIPETEA 176 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 E E G + K LR+A+ GRPNVGKSTL+N L+G R++ G TRD Sbjct: 177 ASEVAAETAPDPGAETTKPREHSLRLAIAGRPNVGKSTLVNALVGEERVIAFDMPGTTRD 236 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 ++ + + + DTAG+R+ ++ E++E+ +V K++Q++ ++LLDAT Sbjct: 237 AIEVPFERDGRKFILIDTAGLRRKGKVFEAVEKFSVIKTLQAIEQANVVVLLLDATEGVS 296 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVS--DKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 QD I G A+VLA NKWD V + L+ +R + LP + ++IS Sbjct: 297 DQDAHIASFAVEAGRALVLAANKWDAVDTYGRERLMVAIRQR----LPFVSFAKFHSISA 352 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 RTG GL+ LM SV+ + ++ T L + + Q PP +L+Y Q + Sbjct: 353 RTGSGLNGLMKSVVAAHAAAYRKLPTPKLTRAIIEAVAQQQPPRSGPVRPKLRYAHQGGT 412 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIK 469 +PP +I + +++P +Y RYL +LR F L+G P+R+ ++SS NPY + Sbjct: 413 NPPIIIIHGSALDRVPATYTRYLEGQLREKFDLTGTPLRVEYRSSTNPYAR 463 >gi|161612723|ref|YP_001586688.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|189037158|sp|A9N205|DER_SALPB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|161362087|gb|ABX65855.1| hypothetical protein SPAB_00422 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 490 Score = 288 bits (737), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 164/478 (34%), Positives = 260/478 (54%), Gaps = 19/478 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A + G F +DT GI Sbjct: 1 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ LAI EA ++LF++D++AG+ P D AI LR + P +V+NK Sbjct: 61 -DGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGT-SELHSVIFKIFKQKYPNHPLE------ 173 D + + YSL EI I+A H G S L V+ P ++ Sbjct: 120 TDGLDPDQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHVLLPWMDDVAPQEEVDEDAEYW 179 Query: 174 -MIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTG 232 E + EE+P+++ + S P+++A+VGRPNVGKSTL NR+LG R++ Sbjct: 180 AQFEAEQNGEEAPEDDFDPQ--------SLPIKLAIVGRPNVGKSTLTNRILGEERVVVY 231 Query: 233 SQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVL 292 G TRDS+ I + DTAG+RK +IT+++E+ +V K++Q++ +++ Sbjct: 232 DMPGTTRDSIYIPMERDEREYVLIDTAGVRKRGKITDAVEKFSVIKTLQAIEDANVVLLV 291 Query: 293 LDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIY 352 +DA QDL ++ + N+G ++V+ +NKWD +S ++ + ++ L I Sbjct: 292 IDAREGISDQDLSLLGFILNSGRSLVIVVNKWDGLSQEVK--EQVKETLDFRLGFIDFAR 349 Query: 353 INTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKY 412 ++ IS G G+ +L SV E R++T+ L + + PP + R +LKY Sbjct: 350 VHFISALHGSGVGNLFESVREAYDSSTRRVSTAMLTRIMTMAVEDHQPPLVRGRRVKLKY 409 Query: 413 ITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I +P+SYKRYL+N R + + G IR+ F+ +NPY K Sbjct: 410 AHAGGYNPPIVVIHGNQVKDLPDSYKRYLMNYFRKSLEVMGTSIRIQFKEGENPYANK 467 >gi|153838555|ref|ZP_01991222.1| GTP-binding protein EngA [Vibrio parahaemolyticus AQ3810] gi|149748070|gb|EDM58929.1| GTP-binding protein EngA [Vibrio parahaemolyticus AQ3810] Length = 498 Score = 288 bits (737), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 166/474 (35%), Positives = 270/474 (56%), Gaps = 10/474 (2%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGV-IFNIVDTAG 59 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YGQA ++ F ++DT G Sbjct: 1 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQARLDEEHEFIVIDTGG 60 Query: 60 IADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 I DG + +M +Q+ AI+EA ++LFL+D +AG+TP D AI + LRK P ++V N Sbjct: 61 I-DGTEEGVETKMAEQSLAAIDEADVVLFLVDGRAGLTPADEAIAAHLRKIEKPAMLVVN 119 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLG-TSELHSVIFKIFKQ----KYPNHPLEM 174 K+D A + + L ++ +I+A H G T+ L + F + +E Sbjct: 120 KIDGIDADAACADFWQLGVDDMYQIAAAHGRGVTALLERALAPFFDDLLTSESEEGEIED 179 Query: 175 IENNKRNEESPKENITSEGKSSVKNI-SKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGS 233 + + E +P E E ++ + + +P+++A++GRPNVGKSTL NR+LG R++ Sbjct: 180 LTEFEDAEIAPDEYTEEEAEAEFQRLQEQPIKLAIIGRPNVGKSTLTNRILGEERVVVYD 239 Query: 234 QSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLL 293 G TRDS+ I I DTAG+R+ RI E++E+ +V K++++V ++++ Sbjct: 240 MPGTTRDSIYIPMERDGREYVIIDTAGVRRRGRINETVEKFSVVKTLKAVEDANVVLLVI 299 Query: 294 DATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYI 353 DA QDL ++ N G ++VLA+NKWD + +++ ++++ + + L + I Sbjct: 300 DARENISDQDLSLLGFALNAGRSIVLAVNKWDGLDNEVK--ENVKKELDRRLGFVDFARI 357 Query: 354 NTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYI 413 + IS G G+ L S+ E K TR+ TS L ++ + PP + R +LKY Sbjct: 358 HFISALHGTGVGHLFESIQEAYKSATTRVGTSVLTRIMKMATDDHQPPMVRGRRIKLKYA 417 Query: 414 TQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 +PP +I ++P+SYKRYL+N R + + G PIR+ FQ+S+NP+ Sbjct: 418 HAGGYNPPIVVIHGNMVRELPDSYKRYLMNYFRKSLEIMGTPIRINFQNSENPF 471 >gi|145633562|ref|ZP_01789290.1| GTP-binding protein EngA [Haemophilus influenzae 3655] gi|144985768|gb|EDJ92382.1| GTP-binding protein EngA [Haemophilus influenzae 3655] Length = 504 Score = 288 bits (737), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 170/483 (35%), Positives = 268/483 (55%), Gaps = 31/483 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG A I G F ++DT GI DG Sbjct: 6 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHIAGYDFILIDTGGI-DGT 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPI-IIVSNKMDT 123 + ++M +Q+ LAI+EA ++LFL+D++AG+T D I ++LR++ I ++V+NK D Sbjct: 65 EEGVEEKMAEQSLLAIDEADIVLFLVDARAGLTAADIGIANYLRQRQNKITVVVANKTDG 124 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 A + E Y L EI +I+A G ++L + F +K N EN++ +EE Sbjct: 125 IDADSHCAEFYQLGLGEIEQIAASQGRGVTQLMEQVLAPFAEKMENAD----ENDRTSEE 180 Query: 184 SPKE-----NITSEGKSSV----------KNISKPLRIAVVGRPNVGKSTLINRLLGYNR 228 E + SE +++ + K ++IA+VGRPNVGKSTL NR+LG +R Sbjct: 181 VQDEWEQEFDFDSEEDTALIDDALDEELEEEQDKNIKIAIVGRPNVGKSTLTNRILGEDR 240 Query: 229 LLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCET 288 ++ G TRDS+ I + DTAG+RK ++ ++E+ +V K++Q+++ Sbjct: 241 VVVFDMPGTTRDSIYIPMERDGQQYTLIDTAGVRKRGKVHLAVEKFSVIKTLQAIQDANV 300 Query: 289 TIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQI 348 ++ +DA QDL ++ + N G ++V+ +NKWD L QD++ + L + Sbjct: 301 VLLTIDARENISDQDLSLLGFILNAGRSLVIVVNKWD------GLDQDVKDRVKSELDRR 354 Query: 349 GDI----YINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIF 404 D ++ IS G G+ +L S+ E ++TTS L LQ ++ PP I Sbjct: 355 LDFIDFARVHFISALHGSGVGNLFDSIKEAYACATQKMTTSLLTRILQMATDEHQPPMIG 414 Query: 405 NRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 R +LKY +PP ++ +K+P+SYKRYL N R + + G PIR+ FQ Sbjct: 415 GRRIKLKYAHPGGYNPPIIVVHGNQMDKLPDSYKRYLSNYYRKSLKIIGSPIRLLFQEGA 474 Query: 465 NPY 467 NP+ Sbjct: 475 NPF 477 >gi|297581162|ref|ZP_06943086.1| GTP-binding protein [Vibrio cholerae RC385] gi|297534478|gb|EFH73315.1| GTP-binding protein [Vibrio cholerae RC385] Length = 494 Score = 288 bits (737), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 169/473 (35%), Positives = 266/473 (56%), Gaps = 6/473 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YGQA + F ++DT GI Sbjct: 1 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGEHEFIVIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M Q+ AI+EA ++LF++D +AG+T D AI LR+ P I+V NK Sbjct: 61 -DGSEEGVETKMAQQSLAAIDEADVVLFMVDGRAGLTVADEAIAQHLRRIEKPAILVVNK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHP--LEMIENN 178 +D A E + L ++ +I+A H G L F ++ + LE + N Sbjct: 120 VDGIDADAASAEFWQLGMDQMYQIAAAHGRGVGALIDRALNPFAEQMESEQAQLEDLTNE 179 Query: 179 KRNEESPKENITSEGKSSVKNISK-PLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGI 237 + EE E E + K + P+++A++GRPNVGKSTL NR+LG R++ G Sbjct: 180 EDPEEEQLEYSEEEAEVEYKRLQDLPIKLAIIGRPNVGKSTLTNRILGEERVVVYDMPGT 239 Query: 238 TRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATI 297 TRDS+ I + DTAG+R+ RI E++E+ +V K++Q++ ++++DA Sbjct: 240 TRDSIYIPMKRDEREYVLIDTAGVRRRKRINETVEKFSVVKTLQAIEDANVVLLVVDARE 299 Query: 298 PFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTIS 357 QDL ++ N+G ++V+A+NKWD +S L++ + ++ + + L + I+ IS Sbjct: 300 NISDQDLSLLGFALNSGRSIVIAVNKWDGLS--LDVKEHVKKELDRRLGFVDFARIHFIS 357 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 G G+ L SV E + TR+ TS L ++ + PP + R +LKY Sbjct: 358 ALHGTGVGHLFESVQEAYRSATTRVGTSVLTRIMKMATDDHQPPMVRGRRVKLKYAHAGG 417 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I N++P+SYKRYL+N R + + G PIR+ FQ+S+NP+ K Sbjct: 418 YNPPIIVIHGNQVNELPDSYKRYLMNYYRKSLEIMGTPIRIQFQNSENPFEGK 470 >gi|15640782|ref|NP_230412.1| GTP-binding protein EngA [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121585667|ref|ZP_01675462.1| GTP-binding protein [Vibrio cholerae 2740-80] gi|121726039|ref|ZP_01679338.1| GTP-binding protein [Vibrio cholerae V52] gi|147675115|ref|YP_001216248.1| GTP-binding protein EngA [Vibrio cholerae O395] gi|153817276|ref|ZP_01969943.1| GTP-binding protein [Vibrio cholerae NCTC 8457] gi|153821375|ref|ZP_01974042.1| GTP-binding protein [Vibrio cholerae B33] gi|227080942|ref|YP_002809493.1| GTP-binding protein [Vibrio cholerae M66-2] gi|229505623|ref|ZP_04395133.1| GTP-binding protein EngA [Vibrio cholerae BX 330286] gi|229510705|ref|ZP_04400184.1| GTP-binding protein EngA [Vibrio cholerae B33] gi|229517827|ref|ZP_04407271.1| GTP-binding protein EngA [Vibrio cholerae RC9] gi|229608641|ref|YP_002879289.1| GTP-binding protein EngA [Vibrio cholerae MJ-1236] gi|254847900|ref|ZP_05237250.1| GTP-binding protein EngA [Vibrio cholerae MO10] gi|255744569|ref|ZP_05418520.1| GTP-binding protein EngA [Vibrio cholera CIRS 101] gi|262161296|ref|ZP_06030407.1| GTP-binding protein EngA [Vibrio cholerae INDRE 91/1] gi|262168789|ref|ZP_06036484.1| GTP-binding protein EngA [Vibrio cholerae RC27] gi|298499104|ref|ZP_07008911.1| ribosome-associated GTPase EngA [Vibrio cholerae MAK 757] gi|26006742|sp|Q9KTW7|DER_VIBCH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|172047436|sp|A5F3E6|DER_VIBC3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|254783177|sp|C3LT16|DER_VIBCM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|9655209|gb|AAF93928.1| GTP-binding protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121550030|gb|EAX60046.1| GTP-binding protein [Vibrio cholerae 2740-80] gi|121631521|gb|EAX63891.1| GTP-binding protein [Vibrio cholerae V52] gi|126512192|gb|EAZ74786.1| GTP-binding protein [Vibrio cholerae NCTC 8457] gi|126521085|gb|EAZ78308.1| GTP-binding protein [Vibrio cholerae B33] gi|146316998|gb|ABQ21537.1| GTP-binding protein [Vibrio cholerae O395] gi|227008830|gb|ACP05042.1| GTP-binding protein [Vibrio cholerae M66-2] gi|227012587|gb|ACP08797.1| GTP-binding protein [Vibrio cholerae O395] gi|229344542|gb|EEO09516.1| GTP-binding protein EngA [Vibrio cholerae RC9] gi|229350670|gb|EEO15611.1| GTP-binding protein EngA [Vibrio cholerae B33] gi|229357846|gb|EEO22763.1| GTP-binding protein EngA [Vibrio cholerae BX 330286] gi|229371296|gb|ACQ61719.1| GTP-binding protein EngA [Vibrio cholerae MJ-1236] gi|254843605|gb|EET22019.1| GTP-binding protein EngA [Vibrio cholerae MO10] gi|255737600|gb|EET92994.1| GTP-binding protein EngA [Vibrio cholera CIRS 101] gi|262022907|gb|EEY41613.1| GTP-binding protein EngA [Vibrio cholerae RC27] gi|262029046|gb|EEY47699.1| GTP-binding protein EngA [Vibrio cholerae INDRE 91/1] gi|297543437|gb|EFH79487.1| ribosome-associated GTPase EngA [Vibrio cholerae MAK 757] Length = 494 Score = 288 bits (737), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 168/473 (35%), Positives = 267/473 (56%), Gaps = 6/473 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YGQA + F ++DT GI Sbjct: 1 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGEHEFIVIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M Q+ AI+EA ++LF++D +AG+T D AI LR+ P I+V NK Sbjct: 61 -DGSEEGVETKMAQQSLAAIDEADVVLFMVDGRAGLTVADEAIAQHLRRIEKPAILVVNK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHP--LEMIENN 178 +D A E + L ++ +I+A H G L + F ++ + LE + N Sbjct: 120 VDGIDADAASAEFWQLGMDQMYQIAAAHGRGVGALIDRVLNPFAEQMESEQAQLEDLTNE 179 Query: 179 KRNEESPKENITSEGKSSVKNISK-PLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGI 237 + EE E E ++ K + P+++A++GRPNVGKSTL NR+LG R++ G Sbjct: 180 EDPEEEQLEYSEEEAEAEYKRLQDLPIKLAIIGRPNVGKSTLTNRILGEERVVVYDMPGT 239 Query: 238 TRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATI 297 TRDS+ I + DTAG+R+ RI E++E+ +V K++Q++ ++++DA Sbjct: 240 TRDSIYIPMKRDEREYVLIDTAGVRRRKRINETVEKFSVVKTLQAIEDANVVLLVVDARE 299 Query: 298 PFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTIS 357 QDL ++ N+G ++V+A+NKWD +S ++ + ++ + + L + I+ IS Sbjct: 300 NISDQDLSLLGFALNSGRSIVIAVNKWDGLS--FDVKEHVKKELDRRLGFVDFARIHFIS 357 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 G G+ L SV E + TR+ TS L ++ + PP + R +LKY Sbjct: 358 ALHGTGVGHLFESVQEAYRSATTRVGTSVLTRIMKMATDDHQPPMVRGRRVKLKYAHAGG 417 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I N++P+SYKRYL+N R + + G PIR+ FQ+S+NP+ K Sbjct: 418 YNPPIIVIHGNQVNELPDSYKRYLMNYYRKSLEIMGTPIRIQFQNSENPFEGK 470 >gi|330830064|ref|YP_004393016.1| GTP-binding protein engA [Aeromonas veronii B565] gi|328805200|gb|AEB50399.1| GTP-binding protein engA [Aeromonas veronii B565] Length = 498 Score = 288 bits (736), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 168/487 (34%), Positives = 263/487 (54%), Gaps = 27/487 (5%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YGQA + + F +VDT GI Sbjct: 1 MTPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGELEFIVVDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG I +M +Q+ LAI EA ++LF++D++AG+T D AI LRK + + +V+NK Sbjct: 61 -DGTEEGIELKMAEQSLLAIEEADVVLFMVDARAGLTAADQAIAEHLRKAHKKVFLVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 D E Y L E+ +I+A H G + + + H ++++ Sbjct: 120 TDGIDGDSAVSEFYGLALGEVYQIAAAHGRG-------VLSLLELALAPHLETLVDSATD 172 Query: 181 NEESPKE----------NITSEGKSSVKNISK-------PLRIAVVGRPNVGKSTLINRL 223 + +E + + G+ K +K P++ A+VGRPNVGKSTL NR+ Sbjct: 173 EDAQDEEEEDFDEEALLRMVAAGELDTKEDTKETPFADLPIKFAIVGRPNVGKSTLTNRM 232 Query: 224 LGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSV 283 LG +R++ G TRDSV I + DTAG+R+ ++ E++E+ +V K+++++ Sbjct: 233 LGEDRVIVYDMPGTTRDSVYIPMERDEQKYVVIDTAGVRRRGKVHETVEKFSVIKTLKAI 292 Query: 284 RTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIK 343 ++++DA QDL I+ V + G +VVL +NKWD + K+ +D++ + + Sbjct: 293 EDANVCLLVIDAQETITDQDLSILGYVLHAGRSVVLVVNKWDGLDQKVK--EDVKNELDR 350 Query: 344 NLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTI 403 L I ++ IS G G+ L S+ E + R +T+ L +Q Q + PP + Sbjct: 351 RLGFIDFARVHFISALHGSGVGHLFESIQEAYQSATRRTSTAMLTRIMQMAQEDHQPPMV 410 Query: 404 FNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSS 463 R +LKY +PP +I N +P+SYKRYLIN R + + G PIR+ FQ S Sbjct: 411 NGRRVKLKYAHAGGYNPPRIVIHGNQLNDLPDSYKRYLINYFRKSLKIMGSPIRVEFQES 470 Query: 464 KNPYIKK 470 NP+ K Sbjct: 471 VNPFEGK 477 >gi|161502327|ref|YP_001569439.1| GTP-binding protein EngA [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160863674|gb|ABX20297.1| hypothetical protein SARI_00360 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 504 Score = 288 bits (736), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 163/478 (34%), Positives = 261/478 (54%), Gaps = 19/478 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A + G F +DT GI Sbjct: 15 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGI 74 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ LAI EA ++LF++D++AG+ P D AI LR + P +V+NK Sbjct: 75 -DGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANK 133 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGT-SELHSVIFKIFKQKYPNHPLE------ 173 D + + YSL +I I+A H G S L V+ P ++ Sbjct: 134 TDGLDPDQAVVDFYSLGLGDIYPIAASHGRGVLSLLEHVLLPWMDDIAPQEEVDEDAEYW 193 Query: 174 -MIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTG 232 E + +EE+P+++ + P+++A+VGRPNVGKSTL NR+LG R++ Sbjct: 194 AQFEAEENSEEAPEDDFNPQ--------DLPIKLAIVGRPNVGKSTLTNRILGEERVVVY 245 Query: 233 SQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVL 292 G TRDS+ I + DTAG+RK +IT+++E+ +V K++Q++ +++ Sbjct: 246 DMPGTTRDSIYIPMERDEREYVLIDTAGVRKRGKITDAVEKFSVIKTLQAIEDANVVLLV 305 Query: 293 LDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIY 352 +DA QDL ++ + N+G ++V+ +NKWD +S ++ + ++ L I Sbjct: 306 IDAREGISDQDLSLLGFILNSGRSLVIVVNKWDGLSQEVK--EQVKETLDFRLGFIDFAR 363 Query: 353 INTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKY 412 ++ IS G G+ +L SV E R++T+ L + + PP + R +LKY Sbjct: 364 VHFISALHGSGVGNLFESVREAYDSSTRRVSTALLTRIMTMAVEDHQPPLVRGRRVKLKY 423 Query: 413 ITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I +P+SYKRYL+N R + + G PIR+ F+ +NPY K Sbjct: 424 AHAGGYNPPIVVIHGNQVKDLPDSYKRYLMNYFRKSLEVMGTPIRIQFKEGENPYANK 481 >gi|28897386|ref|NP_796991.1| GTP-binding protein EngA [Vibrio parahaemolyticus RIMD 2210633] gi|308094331|ref|ZP_05888700.2| ribosome-associated GTPase EngA [Vibrio parahaemolyticus AN-5034] gi|308095608|ref|ZP_05907112.2| ribosome-associated GTPase EngA [Vibrio parahaemolyticus Peru-466] gi|308125630|ref|ZP_05776379.2| ribosome-associated GTPase EngA [Vibrio parahaemolyticus K5030] gi|308126072|ref|ZP_05907679.2| ribosome-associated GTPase EngA [Vibrio parahaemolyticus AQ4037] gi|31340057|sp|Q87S12|DER_VIBPA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|28805598|dbj|BAC58875.1| GTP-binding protein [Vibrio parahaemolyticus RIMD 2210633] gi|308086906|gb|EFO36601.1| ribosome-associated GTPase EngA [Vibrio parahaemolyticus Peru-466] gi|308092889|gb|EFO42584.1| ribosome-associated GTPase EngA [Vibrio parahaemolyticus AN-5034] gi|308106660|gb|EFO44200.1| ribosome-associated GTPase EngA [Vibrio parahaemolyticus AQ4037] gi|308113011|gb|EFO50551.1| ribosome-associated GTPase EngA [Vibrio parahaemolyticus K5030] Length = 498 Score = 288 bits (736), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 166/474 (35%), Positives = 270/474 (56%), Gaps = 10/474 (2%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGV-IFNIVDTAG 59 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YGQA ++ F ++DT G Sbjct: 1 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQARLDEEHEFIVIDTGG 60 Query: 60 IADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 I DG + +M +Q+ AI+EA ++LFL+D +AG+TP D AI + LRK P ++V N Sbjct: 61 I-DGTEEGVETKMAEQSLAAIDEADVVLFLVDGRAGLTPADEAIAAHLRKIEKPAMLVVN 119 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLG-TSELHSVIFKIFKQ----KYPNHPLEM 174 K+D A + + L ++ +I+A H G T+ L + F + +E Sbjct: 120 KIDGIDADAACADFWQLGVDDMYQIAAAHGRGVTALLERALAPFFDDLLTSESEEGEIED 179 Query: 175 IENNKRNEESPKENITSEGKSSVKNI-SKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGS 233 + + E +P E E ++ + + +P+++A++GRPNVGKSTL NR+LG R++ Sbjct: 180 LTEFEDAEIAPDEYTEEEAEAEFQRLQEQPIKLAIIGRPNVGKSTLTNRILGEERVVVYD 239 Query: 234 QSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLL 293 G TRDS+ I I DTAG+R+ RI E++E+ +V K++++V ++++ Sbjct: 240 MPGTTRDSIYIPMERDGREYVIIDTAGVRRRGRINETVEKFSVVKTLKAVEDANVVLLVI 299 Query: 294 DATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYI 353 DA QDL ++ N G ++VLA+NKWD + +++ ++++ + + L + I Sbjct: 300 DARENISDQDLSLLGFALNAGRSIVLAVNKWDGLDNEVK--ENVKKELDRRLGFVDFARI 357 Query: 354 NTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYI 413 + IS G G+ L S+ E K TR+ TS L ++ + PP + R +LKY Sbjct: 358 HFISALHGTGVGHLFESIQEAYKSATTRVGTSVLTRIMKMATDDHQPPMVRGRRIKLKYA 417 Query: 414 TQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 +PP +I ++P+SYKRYL+N R + + G PIR+ FQ+S+NP+ Sbjct: 418 HAGGYNPPIVVIHGNMVRELPDSYKRYLMNYFRKSLEIMGTPIRINFQNSENPF 471 >gi|262192496|ref|ZP_06050647.1| GTP-binding protein EngA [Vibrio cholerae CT 5369-93] gi|262031655|gb|EEY50242.1| GTP-binding protein EngA [Vibrio cholerae CT 5369-93] Length = 494 Score = 288 bits (736), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 169/473 (35%), Positives = 267/473 (56%), Gaps = 6/473 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YGQA + F ++DT GI Sbjct: 1 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGEHEFIVIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M Q+ AI+EA ++LF++D +AG+T D AI LR+ P I+V NK Sbjct: 61 -DGSEEGVETKMAQQSLAAIDEADVVLFMVDGRAGLTVADEAIAQHLRRIEKPAILVVNK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHP--LEMIENN 178 +D A E + L ++ +I+A H G L F ++ + LE + N Sbjct: 120 VDGIDADAASAEFWQLGMDQMYQIAAAHGRGVGTLIDRALNPFAEQMESEQAQLEDLTNE 179 Query: 179 KRNEESPKENITSEGKSSVKNISK-PLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGI 237 + EE E E ++ K + P+++A++GRPNVGKSTL NR+LG R++ G Sbjct: 180 EDPEEEQLEYSEEEAEAEYKRLQDLPIKLAIIGRPNVGKSTLTNRILGEERVVVYDMPGT 239 Query: 238 TRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATI 297 TRDS+ I + DTAG+R+ RI E++E+ +V K++Q++ ++++DA Sbjct: 240 TRDSIYIPMKRDEREYVLIDTAGVRRRKRINETVEKFSVVKTLQAIEDANVVLLVVDARE 299 Query: 298 PFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTIS 357 QDL ++ N+G ++V+A+NKWD +S L++ + ++ + + L + I+ IS Sbjct: 300 NISDQDLSLLGFALNSGRSIVIAVNKWDGLS--LDVKEHVKKELDRRLGFVDFARIHFIS 357 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 G G+ L SV E + TR+ TS L ++ + PP + R +LKY Sbjct: 358 ALHGTGVGHLFESVQEAYRSATTRVGTSVLTRIMKMATDDHQPPMVRGRRVKLKYAHAGG 417 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I N++P+SYKRYL+N R + + G PIR+ FQ+S+NP+ K Sbjct: 418 YNPPIIVIHGNQVNELPDSYKRYLMNYYRKSLEIMGTPIRIQFQNSENPFEGK 470 >gi|219870952|ref|YP_002475327.1| GTP-binding protein EngA [Haemophilus parasuis SH0165] gi|254783156|sp|B8F4X7|DER_HAEPS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|219691156|gb|ACL32379.1| GTP-binding protein EngA [Haemophilus parasuis SH0165] Length = 504 Score = 288 bits (736), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 165/483 (34%), Positives = 267/483 (55%), Gaps = 16/483 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG A I G F ++DT GI Sbjct: 1 MTPVVALVGRPNVGKSTLFNRLTRTRNALVADFPGLTRDRKYGHANIAGHDFIVIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + ++M +Q+ LAI EA ++LFL+D++AG+ P D I +LR++N ++V+NK Sbjct: 61 -DGTEEGVEEKMAEQSLLAIKEADVVLFLVDARAGLLPADVGIAQYLRQRNKTTVVVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN--- 177 D A + E Y L E+ I+A G ++L + +K ++ EN Sbjct: 120 TDGIDADSHIAEFYQLGLGEVEPIAAAQGRGVTQLIEQVLAPLAEKLEAQAVDSDENVAD 179 Query: 178 NKRNEESPKENITSEGKSSV----------KNISKPLRIAVVGRPNVGKSTLINRLLGYN 227 ++++E + +E +++ + K ++IA+VGRPNVGKSTL NR+LG Sbjct: 180 DEQDEWDSDFDFDNEEDTALLDEALEEDQEETDDKNIKIAIVGRPNVGKSTLTNRILGEE 239 Query: 228 RLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCE 287 R++ G TRDS+ I I DTAG+RK ++ ++E+ +V K++Q+++ Sbjct: 240 RVVVYDMPGTTRDSIYIPMERDGQQYTIIDTAGVRKRGKVHLAVEKFSVIKTLQAIQDAN 299 Query: 288 TTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQ 347 ++ +DA QDL ++ + N G ++V+ +NKWD +S ++ +++++ + L Sbjct: 300 VVLLTIDARDGVSDQDLSLLGFILNAGKSLVIVVNKWDGLSQ--DIKDNVKSELDRRLDF 357 Query: 348 IGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRY 407 I ++ IS G G+ +L S+ E + ++TTS L LQ + PP + R Sbjct: 358 IDFARVHFISALHGSGVGNLFSSIQEAYQCATKKMTTSMLTRILQLAMDDHQPPLVNGRR 417 Query: 408 NRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 +LKY +PP +I K+P+SYKRYL N R + + G PIR+ FQ NP+ Sbjct: 418 VKLKYAHPGGYNPPIIVIHGNQIEKLPDSYKRYLSNYFRKSLKIIGSPIRVLFQEGNNPF 477 Query: 468 IKK 470 K Sbjct: 478 AGK 480 >gi|205353618|ref|YP_002227419.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|238690507|sp|B5RCY8|DER_SALG2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|205273399|emb|CAR38374.1| putative GTP-binding protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326628718|gb|EGE35061.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 490 Score = 288 bits (736), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 164/478 (34%), Positives = 260/478 (54%), Gaps = 19/478 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A + G F +DT GI Sbjct: 1 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ LAI EA ++LF++D++AG+ P D AI LR + P +V+NK Sbjct: 61 -DGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGT-SELHSVIFKIFKQKYPNHPLE------ 173 D + + YSL EI I+A H G S L V+ P ++ Sbjct: 120 TDGLDPDQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHVLLPWMDDVAPQEEVDEDAEYW 179 Query: 174 -MIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTG 232 E + EE+P+++ + S P+++A+VGRPNVGKSTL NR+LG R++ Sbjct: 180 AQFEVEQNGEEAPEDDFDPQ--------SLPIKLAIVGRPNVGKSTLTNRILGEERVVVY 231 Query: 233 SQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVL 292 G TRDS+ I + DTAG+RK +IT+++E+ +V K++Q++ +++ Sbjct: 232 DMPGTTRDSIYIPMERDEREYVLIDTAGVRKRGKITDAVEKFSVIKTLQAIEDANVVLLV 291 Query: 293 LDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIY 352 +DA QDL ++ + N+G ++V+ +NKWD +S ++ + ++ L I Sbjct: 292 IDAREGISDQDLSLLGFILNSGRSLVIVVNKWDGLSQEVK--EQVKETLDFRLGFIDFAR 349 Query: 353 INTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKY 412 ++ IS G + +L SV E R++T+ L + + PP + R +LKY Sbjct: 350 VHFISALHGSDVGNLFESVREAYDSSTRRVSTAMLTRIMTMAVEDHQPPLVRGRRVKLKY 409 Query: 413 ITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I +P+SYKRYL+N R + + G PIR+ F+ +NPY K Sbjct: 410 AHAGGYNPPIVVIHGNQVKDLPDSYKRYLMNYFRKSLEVMGTPIRIQFKEGENPYANK 467 >gi|167854675|ref|ZP_02477455.1| GTP-binding protein EngA [Haemophilus parasuis 29755] gi|167854212|gb|EDS25446.1| GTP-binding protein EngA [Haemophilus parasuis 29755] Length = 504 Score = 288 bits (736), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 165/483 (34%), Positives = 268/483 (55%), Gaps = 16/483 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG A I G F ++DT GI Sbjct: 1 MTPVVALVGRPNVGKSTLFNRLTRTRNALVADFPGLTRDRKYGHANIAGHDFIVIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + ++M +Q+ LAI EA ++LFL+D++AG+ P D I +LR++N ++V+NK Sbjct: 61 -DGTEEGVEEKMAEQSLLAIKEADVVLFLVDARAGLLPADVGIAQYLRQRNKTTVVVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN--- 177 D A + E Y L E+ I+A G ++L + +K ++ EN Sbjct: 120 TDGIDADSHIAEFYQLGLGEVEPIAAAQGRGVTQLIEQVLAPLAEKLEAQAVDSDENVAD 179 Query: 178 NKRNEESPKENITSEGKSSVKNIS----------KPLRIAVVGRPNVGKSTLINRLLGYN 227 ++++E + +E +++ + + K ++IA+VGRPNVGKSTL NR+LG Sbjct: 180 DEQDEWDSDFDFDNEEDTALLDEALEEDQEEADDKNIKIAIVGRPNVGKSTLTNRILGEE 239 Query: 228 RLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCE 287 R++ G TRDS+ I I DTAG+RK ++ ++E+ +V K++Q+++ Sbjct: 240 RVVVYDMPGTTRDSIYIPMERDGQQYTIIDTAGVRKRGKVHLAVEKFSVIKTLQAIQDAN 299 Query: 288 TTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQ 347 ++ +DA QDL ++ + N G ++V+ +NKWD +S ++ +++++ + L Sbjct: 300 VVLLTIDARDGVSDQDLSLLGFILNAGKSLVIVVNKWDGLSQ--DIKDNVKSELDRRLDF 357 Query: 348 IGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRY 407 I ++ IS G G+ +L S+ E + ++TTS L LQ + PP + R Sbjct: 358 IDFARVHFISALHGSGVGNLFSSIQEAYQCATKKMTTSMLTRILQLAMDDHQPPLVNGRR 417 Query: 408 NRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 +LKY +PP +I K+P+SYKRYL N R + + G PIR+ FQ NP+ Sbjct: 418 VKLKYAHPGGYNPPIIVIHGNQIEKLPDSYKRYLSNYFRKSLKIIGSPIRVLFQEGNNPF 477 Query: 468 IKK 470 K Sbjct: 478 AGK 480 >gi|300717947|ref|YP_003742750.1| GTP-binding protein [Erwinia billingiae Eb661] gi|299063783|emb|CAX60903.1| GTP-binding protein [Erwinia billingiae Eb661] Length = 495 Score = 288 bits (736), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 168/480 (35%), Positives = 265/480 (55%), Gaps = 17/480 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + A+V + PG+TRDR YG+A + G F +DT GI Sbjct: 1 MVPVVALVGRPNVGKSTLFNRLTHTRDALVADFPGLTRDRKYGRAEVEGQQFICIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M Q+ LAI EA ++LF++D++AG+ P D AI LR + P +V+NK Sbjct: 61 -DGNEEGVETRMAAQSLLAIEEADVVLFMVDARAGLMPADIAIAQHLRSREKPTFLVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYP-NHPLEMIENNK 179 D + YSL EI I+A H G + L + + +++ + PL E N Sbjct: 120 TDGLDPDSAVVDFYSLGLGEIHAIAASHGRGVASLLEDVLEPYREVVEESAPLTEEEENA 179 Query: 180 RN----EESPKENI-TSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQ 234 E + + I +E + + + P+++A+VGRPNVGKSTL NR+LG +R++ Sbjct: 180 AYWADLEAAEQGEIEAAEAEDNFNPLDLPIKLAIVGRPNVGKSTLTNRILGEDRVVVFDA 239 Query: 235 SGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLD 294 G TRDS+ I + DTAG+RK ++TE++E+ +V K++Q++ ++++D Sbjct: 240 PGTTRDSIYIPMERDGREYILIDTAGVRKRGKVTETVEKFSVIKTLQAIEDANVVMLVID 299 Query: 295 ATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLP-QIGDI-- 351 A QDL ++ + N+G ++V+ +NKWD +S Q++R + + L ++G I Sbjct: 300 AREGISDQDLSLLGFILNSGRSLVIVVNKWDGLS------QEVRDEVKETLDFRLGFIDF 353 Query: 352 -YINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRL 410 ++ IS G G+ +L SV E R+ TS L + + PP + +R +L Sbjct: 354 ARVHFISALHGSGVGNLFESVTEAYDCSTRRVNTSMLTRIMNMAADDHQPPLVRSRRVKL 413 Query: 411 KYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 KY +PP +I +P+SYKRYL+N R + + G PIR+ F+ NPY K Sbjct: 414 KYAHAGGYNPPIVVIHGNQVKDLPDSYKRYLMNYFRRSLEVMGTPIRIQFKEGDNPYEGK 473 >gi|262402852|ref|ZP_06079413.1| GTP-binding protein EngA [Vibrio sp. RC586] gi|262351634|gb|EEZ00767.1| GTP-binding protein EngA [Vibrio sp. RC586] Length = 494 Score = 288 bits (736), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 169/473 (35%), Positives = 267/473 (56%), Gaps = 6/473 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YGQA + F +VDT GI Sbjct: 1 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGEHEFIVVDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M Q+ AI+EA ++LF++D +AG+T D AI LR+ P I+V NK Sbjct: 61 -DGSEEGVETKMAQQSLAAIDEADVVLFMVDGRAGLTVADEAIAQHLRRIEKPAILVVNK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHP--LEMIENN 178 +D A E + L ++ +I+A H G L F ++ + LE + N Sbjct: 120 VDGIDADAASAEFWQLGMDQMYQIAAAHGRGVGALIDRALNPFAEQMESEQAQLEDLTNE 179 Query: 179 KRNEESPKENITSEGKSSVKNISK-PLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGI 237 + EE E E ++ K + P+++A++GRPNVGKSTL NR+LG R++ G Sbjct: 180 EDPEEEQLEYSEEEAEAEYKRLQDLPIKLAIIGRPNVGKSTLTNRILGEERVVVYDMPGT 239 Query: 238 TRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATI 297 TRDS+ I + DTAG+R+ RI E++E+ +V K++Q++ ++++DA Sbjct: 240 TRDSIYIPMKRDEREYVLIDTAGVRRRKRINETVEKFSVVKTLQAIEDANVVLLVVDARE 299 Query: 298 PFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTIS 357 QDL ++ N+G ++V+A+NKWD +S +++ + ++ + + L + I+ IS Sbjct: 300 NISDQDLSLLGFALNSGRSIVIAVNKWDGLS--IDVKEHVKKELDRRLGFVDFARIHFIS 357 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 G G+ L SV E + TR+ TS L ++ + PP + R +LKY Sbjct: 358 ALHGTGVGHLFESVQEAYRSATTRVGTSVLTRIMKMATDDHQPPMVRGRRVKLKYAHAGG 417 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I N++P+SYKRYL+N R + + G PIR+ FQ+S+NP+ K Sbjct: 418 YNPPIIVIHGNQVNELPDSYKRYLMNYYRKSLEIMGTPIRIQFQNSENPFEGK 470 >gi|95930679|ref|ZP_01313413.1| Small GTP-binding protein domain [Desulfuromonas acetoxidans DSM 684] gi|95133331|gb|EAT14996.1| Small GTP-binding protein domain [Desulfuromonas acetoxidans DSM 684] Length = 436 Score = 287 bits (735), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 153/461 (33%), Positives = 252/461 (54%), Gaps = 28/461 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNR++ ++ A+V ++PG+TRDR Y F ++DT G Sbjct: 4 VAIVGRPNVGKSTLFNRILGERKAIVEDYPGVTRDRNYADVTRYDKPFTLIDTGGFEPVS 63 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + QM +Q++LAI EA +ILF++D + G+TP D + LR+ + P++ V NK+D Sbjct: 64 EVRMLVQMREQSQLAIEEADVILFVMDGRDGLTPSDEEVAEMLRRVDKPVLFVVNKVDGD 123 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + E YSL + SAEH G EL + I +E Sbjct: 124 KQEEQAAEFYSLGIEHFFVTSAEHGRGMGELMAAIL---------------------DEL 162 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P+ +V++ S +R+AV+GRPNVGKS+L+N+LLGY R++ +G TRDSV Sbjct: 163 PE-------VKTVEDDSAEVRLAVIGRPNVGKSSLVNKLLGYERVVANPTAGTTRDSVDT 215 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + N + DTAG+R+ ++++ LE+ +V ++++ + +V++DA +QDL Sbjct: 216 PFTYNNQRYVLIDTAGIRRKGKVSQKLEKYSVVQALKGMDRAHVVMVVIDAEEGITEQDL 275 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 I ++ G AVVL +NKWD ++ ++ + + I +S TG+ + Sbjct: 276 TIAGYAYDRGRAVVLVVNKWDTLTKDNQTMKKFTDEVRGQFKFLSFAPIMFVSALTGQRV 335 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 +M +V ++ + + +I+T+ LN L++ + +PP + +L YITQ PPSF Sbjct: 336 AKIMETVEDVAQQFNRKISTAELNRVLKQAEEAHPPAMYHGKRVKLFYITQTAVRPPSFT 395 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 IF + SY+RYL N++R F SG PIR+ ++ ++ Sbjct: 396 IFVNKEKGVHFSYRRYLANKIRQPFGFSGCPIRITYRDREH 436 >gi|51597153|ref|YP_071344.1| GTP-binding protein EngA [Yersinia pseudotuberculosis IP 32953] gi|186896248|ref|YP_001873360.1| GTP-binding protein EngA [Yersinia pseudotuberculosis PB1/+] gi|81825749|sp|Q668A3|DER_YERPS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|238691441|sp|B2K9P6|DER_YERPB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|51590435|emb|CAH22075.1| putative GTP-binding protein [Yersinia pseudotuberculosis IP 32953] gi|186699274|gb|ACC89903.1| small GTP-binding protein [Yersinia pseudotuberculosis PB1/+] Length = 495 Score = 287 bits (735), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 169/479 (35%), Positives = 263/479 (54%), Gaps = 16/479 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI IA+VG PNVGKSTLFNRL + A+V + PG+TRDR YG+A + G F +VDT GI Sbjct: 1 MIPVIALVGRPNVGKSTLFNRLTHTRDALVADFPGLTRDRKYGRAEVEGHEFIVVDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M Q+ LAI EA ++LF++D++AG+ P D I LR + +V+NK Sbjct: 61 -DGTEDGVETKMAGQSLLAIEEADIVLFMVDARAGLMPADQGIAQHLRSREKATFLVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL-HSVIFKIFKQKYPNHPLEMIENNK 179 D + YSL E+ I+A H G ++L V+ + P L E N Sbjct: 120 TDGIDPDTATADFYSLGLGEVHAIAASHGRGVTQLIEDVMAPYMDAEEPEVELTDEEENA 179 Query: 180 R---NEESPKENITSEG-KSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQS 235 +E+ E++ E + + P+++A+VGRPNVGKSTL NR+LG +R++ Sbjct: 180 AYWAEQEAQGEDVPPEDPEDDFDPRTLPIKLAIVGRPNVGKSTLTNRILGEDRVVVYDMP 239 Query: 236 GITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDA 295 G TRDS+ I + + DTAG+RK +ITE++E+ +V K++Q++ ++++DA Sbjct: 240 GTTRDSIYIPMTRDDREYILIDTAGVRKRGKITETVEKFSVIKTLQAIEDSNVVLLVIDA 299 Query: 296 TIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSD----KLNLLQDLRTKAIKNLPQIGDI 351 QDL ++ + N+G ++V+A+NKWD +++ ++ + DLR L + Sbjct: 300 RDGISDQDLSLLGFILNSGRSLVIAVNKWDGMTEEARAQVKDMLDLR------LGFVDFA 353 Query: 352 YINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLK 411 I+ IS G G+ +L SV E R+ TS L +Q + + PP + R +LK Sbjct: 354 RIHFISALHGSGVGNLFESVQEAYDCSTKRVGTSLLTRIMQMAEEDHQPPLVRGRRVKLK 413 Query: 412 YITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 Y +PP +I + +SYKRYL+N R + + G PIR+ F+ +NP+ K Sbjct: 414 YAHAGGYNPPIVVIHGNQVTDLSDSYKRYLMNYFRRSLKVMGTPIRIQFKEGENPFAGK 472 >gi|253581911|ref|ZP_04859135.1| GTP-binding protein [Fusobacterium varium ATCC 27725] gi|251836260|gb|EES64797.1| GTP-binding protein [Fusobacterium varium ATCC 27725] Length = 441 Score = 287 bits (735), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 156/458 (34%), Positives = 258/458 (56%), Gaps = 29/458 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFN LV ++A+V + PG+TRDRLY + NGV F +VDT G+ Sbjct: 5 VAIVGRPNVGKSTLFNNLVGDRIAIVDDMPGVTRDRLYRETEWNGVEFVVVDTGGLEPRN 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N + ++ +Q E+A+NEA +ILF++D K+G+ P D I LRKK PII+ NK+D Sbjct: 65 NEFMMTKIKEQAEVAMNEADVILFVVDGKSGVNPLDEEIAYILRKKQKPIILCVNKIDNF 124 Query: 125 IAQRN-FYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + Q++ Y+ + L F+ ++ +S H + ++ ++ EMIE EE Sbjct: 125 LQQQDDVYDFWGLGFEHLIPVSGAHKVNLGDMLDMV------------TEMIEKIDLPEE 172 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 +E++ L++A++G+PN GKS+L+N+L G R + +G TRD++ Sbjct: 173 --EEDV--------------LKLAIIGKPNAGKSSLVNKLSGEERTIVSDIAGTTRDAID 216 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 +K++ I DTAG+R+ S++ ESLE +V +++++++ + I++LD +QD Sbjct: 217 TIVQYKDNKYMIIDTAGIRRKSKVEESLEYYSVLRAIKTIKRADVCILMLDGKEGLTEQD 276 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 RI +V+ +NKWD+V ++ ++ + LP + I +S TG+ Sbjct: 277 KRIAGIAAEELKPIVVVVNKWDLVDKNKVSMKSMKEELYAELPFLSYAPIEFVSALTGQR 336 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 ++ I + + RI+T LN+ L++ L N PPT R ++ Y TQ+ ++PP F Sbjct: 337 TTKILEISDTIYEEYTKRISTGILNTVLKEAVLMNNPPTRKGRVVKINYATQVSTAPPKF 396 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 ++FC +P I SY RY+ N+ R F G PI + F+ Sbjct: 397 VLFCNYPELIHFSYARYIENKFREAFGFDGSPILISFE 434 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 63/125 (50%), Gaps = 6/125 (4%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + +AI+G PN GKS+L N+L ++ +V + G TRD + + I+DTAGI Sbjct: 176 VLKLAIIGKPNAGKSSLVNKLSGEERTIVSDIAGTTRDAIDTIVQYKDNKYMIIDTAGIR 235 Query: 62 DGKNCSIAKQMNDQTEL----AINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIV 117 + + + + + L I A + + ++D K G+T D I ++ PI++V Sbjct: 236 --RKSKVEESLEYYSVLRAIKTIKRADVCILMLDGKEGLTEQDKRIAGIAAEELKPIVVV 293 Query: 118 SNKMD 122 NK D Sbjct: 294 VNKWD 298 >gi|253988871|ref|YP_003040227.1| GTP-binding protein EngA [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253780321|emb|CAQ83482.1| gtp-binding protein enga (double era-like domain protein) [Photorhabdus asymbiotica] Length = 499 Score = 287 bits (734), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 167/477 (35%), Positives = 263/477 (55%), Gaps = 12/477 (2%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A + G F I+DT GI Sbjct: 6 MIPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGQEFIIIDTGGI 65 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + M Q+ +AI EA ++LF++D++AG+ P DHAI LR + +V+NK Sbjct: 66 -DGTEDGVETHMAAQSLMAIEEADIVLFMVDARAGLMPADHAIAKHLRSREKATFLVANK 124 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF--KQKYPNHPLEMIENN 178 D + E YSL +I I+A H G ++L + F K + L + N Sbjct: 125 TDGIDIDTSIAEFYSLGLGDIYSIAASHGRGVTQLIERVLLPFSGKDEEEEVELTEEQAN 184 Query: 179 KRNEESPKENITSEGKSSVKNI---SKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQS 235 ++N + + + + PL++A+VGRPNVGKSTL NR+LG R++ Sbjct: 185 AAYWAEQEQNESEMAEEEEDDFDPSTLPLKLAIVGRPNVGKSTLTNRILGEERVVVYDMP 244 Query: 236 GITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDA 295 G TRDS+ I + DTAG+RK ++TE++E+ +V K++Q++ ++++DA Sbjct: 245 GTTRDSIYIPMERDGREYVLIDTAGVRKRGKVTETVEKFSVIKTLQAIEDANVVLLVIDA 304 Query: 296 TIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVS--DKLNLLQDLRTKAIKNLPQIGDIYI 353 QDL ++ + N+G ++V+A+NKWD +S DK + + L + L + + Sbjct: 305 REGISDQDLSLLGFILNSGRSLVIAVNKWDGMSQEDKEQVKEMLDYR----LGFVDFARV 360 Query: 354 NTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYI 413 + IS G G+ +L S+LE R++TS L ++ + + PP I R ++KY Sbjct: 361 HFISALHGSGVGNLFDSILEAYDCATRRVSTSLLTRIMRMAEEDHQPPMIRGRRVKMKYA 420 Query: 414 TQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I + +SYKRYL+N R + ++ G PIR+ F+ NPY K Sbjct: 421 HAGGYNPPIVVIHGNQVTNLSDSYKRYLMNYFRRSLNVMGTPIRIQFKEGANPYADK 477 >gi|37525336|ref|NP_928680.1| GTP-binding protein EngA [Photorhabdus luminescens subsp. laumondii TTO1] gi|41017002|sp|Q7N702|DER_PHOLL RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|36784763|emb|CAE13673.1| GTP-binding protein EngA [Photorhabdus luminescens subsp. laumondii TTO1] Length = 493 Score = 287 bits (734), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 170/478 (35%), Positives = 259/478 (54%), Gaps = 15/478 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A + G F I+DT GI Sbjct: 1 MIPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGQEFIIIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + M Q+ LAI EA ++LF++D++AG+ P DHAI LR + +V+NK Sbjct: 61 -DGTEDGVETHMAAQSLLAIEEADIVLFMVDARAGLMPADHAIAKHLRGREKATFLVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 D E YSL +I I+A H G ++L + F K +E+ E Sbjct: 120 TDGVDIDTAIAEFYSLGLGDIYSIAASHGRGVTQLIERVLLPFSGKGEEEVVELTEEEAN 179 Query: 181 N----EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSG 236 E+ E E + + PL++A+VG+PNVGKSTL NR+LG R++ G Sbjct: 180 AAYWAEQEQNEIEMVEEEEDFDPSTLPLKLAIVGKPNVGKSTLTNRILGEERVVVYDMPG 239 Query: 237 ITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDAT 296 TRDS+ I + DTAG+RK +ITE++E+ +V K++Q++ ++++DA Sbjct: 240 TTRDSIYIPMERDGREYILIDTAGVRKRGKITETVEKFSVIKTLQAIEDANVVLLVIDAR 299 Query: 297 IPFEKQDLRIVDSVFNTGHAVVLALNKWDMVS----DKLNLLQDLRTKAIKNLPQIGDIY 352 QDL ++ + N+G ++V+A+NKWD +S +++ + D R L + Sbjct: 300 EGISDQDLSLLGFILNSGRSLVIAVNKWDGMSQEDKERVKEMLDYR------LGFVDFAR 353 Query: 353 INTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKY 412 ++ IS G G+ +L S+LE R+ TS L + + + PP I R ++KY Sbjct: 354 VHFISALHGSGVGNLFDSILEAYDCATRRVNTSLLTRIMHMAEEDHQPPMIRGRRVKMKY 413 Query: 413 ITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I +P+SYKRYL+N R + + G PIR+ F+ NPY K Sbjct: 414 AHAGGYNPPIVVIHGNQVTDLPDSYKRYLMNYFRRSLKVMGTPIRIQFKEGANPYADK 471 >gi|315918500|ref|ZP_07914740.1| GTP-binding protein [Fusobacterium gonidiaformans ATCC 25563] gi|317059700|ref|ZP_07924185.1| GTP-binding protein [Fusobacterium sp. 3_1_5R] gi|313685376|gb|EFS22211.1| GTP-binding protein [Fusobacterium sp. 3_1_5R] gi|313692375|gb|EFS29210.1| GTP-binding protein [Fusobacterium gonidiaformans ATCC 25563] Length = 442 Score = 287 bits (734), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 156/459 (33%), Positives = 256/459 (55%), Gaps = 33/459 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFN L+ ++A+V + PG+TRDRLY + NG F +VDT G+ Sbjct: 9 VAIVGRPNVGKSTLFNNLIGDRVAIVDDMPGVTRDRLYRETEWNGAEFVVVDTGGLEPAN 68 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N + ++ +Q E+A+NEA +ILF++D KAG+ P D + LRKK P+++ NK+D Sbjct: 69 NEFMMTKIKEQAEVAMNEADVILFVVDGKAGLNPLDEEVAYILRKKQKPVVLCVNKIDNY 128 Query: 125 IAQR-NFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF-KQKYPNHPLEMIENNKRNE 182 + Q+ + Y+ + L F+ +V IS H + ++ ++ I K ++P Sbjct: 129 LQQQDDVYDFWGLGFEYLVPISGAHKVNLGDMLDMVVDIIGKLEFPEE------------ 176 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 +E+I L++AV+G+PN GKS+L+NRL G R + +G TRD++ Sbjct: 177 ---EEDI--------------LKLAVIGKPNAGKSSLVNRLSGEERTIVSDIAGTTRDAI 219 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 +K + I DTAG+R+ S++ ESLE +V +++++++ + +++LDA +Q Sbjct: 220 DTLIEYKENRYMIIDTAGIRRKSKVEESLEYYSVLRAIKTIKRADVCLLMLDAQEGLTEQ 279 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D RI +V+ +NKWD+V +K ++ + + LP + I +S TG+ Sbjct: 280 DKRIAGIAAEERKPIVIVMNKWDLVKNK--DMKKYKEELYAELPFLSYAPIEFVSALTGQ 337 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 L+ I + + RI+T LN+ L+ L N PPT R ++ Y TQ+ +PP Sbjct: 338 RTTKLLEIADTIYEEYTKRISTGLLNTVLKDAILMNNPPTRKGRLIKINYGTQVSVAPPK 397 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 F++FC +P I SY RY+ N+ R +F G PI + F+ Sbjct: 398 FVLFCNYPELIHFSYARYIENKFRESFGFEGSPILISFE 436 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 64/125 (51%), Gaps = 6/125 (4%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 I +A++G PN GKS+L NRL ++ +V + G TRD + + I+DTAGI Sbjct: 180 ILKLAVIGKPNAGKSSLVNRLSGEERTIVSDIAGTTRDAIDTLIEYKENRYMIIDTAGIR 239 Query: 62 DGKNCSIAKQMNDQTEL----AINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIV 117 + + + + + L I A + L ++D++ G+T D I ++ PI+IV Sbjct: 240 --RKSKVEESLEYYSVLRAIKTIKRADVCLLMLDAQEGLTEQDKRIAGIAAEERKPIVIV 297 Query: 118 SNKMD 122 NK D Sbjct: 298 MNKWD 302 >gi|257453165|ref|ZP_05618464.1| GTP-binding protein [Fusobacterium sp. 3_1_5R] gi|257467370|ref|ZP_05631681.1| GTP-binding protein [Fusobacterium gonidiaformans ATCC 25563] Length = 438 Score = 287 bits (734), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 156/459 (33%), Positives = 256/459 (55%), Gaps = 33/459 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFN L+ ++A+V + PG+TRDRLY + NG F +VDT G+ Sbjct: 5 VAIVGRPNVGKSTLFNNLIGDRVAIVDDMPGVTRDRLYRETEWNGAEFVVVDTGGLEPAN 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N + ++ +Q E+A+NEA +ILF++D KAG+ P D + LRKK P+++ NK+D Sbjct: 65 NEFMMTKIKEQAEVAMNEADVILFVVDGKAGLNPLDEEVAYILRKKQKPVVLCVNKIDNY 124 Query: 125 IAQR-NFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF-KQKYPNHPLEMIENNKRNE 182 + Q+ + Y+ + L F+ +V IS H + ++ ++ I K ++P Sbjct: 125 LQQQDDVYDFWGLGFEYLVPISGAHKVNLGDMLDMVVDIIGKLEFPEE------------ 172 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 +E+I L++AV+G+PN GKS+L+NRL G R + +G TRD++ Sbjct: 173 ---EEDI--------------LKLAVIGKPNAGKSSLVNRLSGEERTIVSDIAGTTRDAI 215 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 +K + I DTAG+R+ S++ ESLE +V +++++++ + +++LDA +Q Sbjct: 216 DTLIEYKENRYMIIDTAGIRRKSKVEESLEYYSVLRAIKTIKRADVCLLMLDAQEGLTEQ 275 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D RI +V+ +NKWD+V +K ++ + + LP + I +S TG+ Sbjct: 276 DKRIAGIAAEERKPIVIVMNKWDLVKNK--DMKKYKEELYAELPFLSYAPIEFVSALTGQ 333 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 L+ I + + RI+T LN+ L+ L N PPT R ++ Y TQ+ +PP Sbjct: 334 RTTKLLEIADTIYEEYTKRISTGLLNTVLKDAILMNNPPTRKGRLIKINYGTQVSVAPPK 393 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 F++FC +P I SY RY+ N+ R +F G PI + F+ Sbjct: 394 FVLFCNYPELIHFSYARYIENKFRESFGFEGSPILISFE 432 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 64/125 (51%), Gaps = 6/125 (4%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 I +A++G PN GKS+L NRL ++ +V + G TRD + + I+DTAGI Sbjct: 176 ILKLAVIGKPNAGKSSLVNRLSGEERTIVSDIAGTTRDAIDTLIEYKENRYMIIDTAGIR 235 Query: 62 DGKNCSIAKQMNDQTEL----AINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIV 117 + + + + + L I A + L ++D++ G+T D I ++ PI+IV Sbjct: 236 --RKSKVEESLEYYSVLRAIKTIKRADVCLLMLDAQEGLTEQDKRIAGIAAEERKPIVIV 293 Query: 118 SNKMD 122 NK D Sbjct: 294 MNKWD 298 >gi|153828302|ref|ZP_01980969.1| GTP-binding protein [Vibrio cholerae 623-39] gi|254285481|ref|ZP_04960445.1| GTP-binding protein [Vibrio cholerae AM-19226] gi|148876256|gb|EDL74391.1| GTP-binding protein [Vibrio cholerae 623-39] gi|150424343|gb|EDN16280.1| GTP-binding protein [Vibrio cholerae AM-19226] Length = 494 Score = 286 bits (733), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 168/473 (35%), Positives = 266/473 (56%), Gaps = 6/473 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YGQA + F ++DT GI Sbjct: 1 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGEHEFIVIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M Q+ AI+EA ++LF++D +AG+T D AI LR+ P I+V NK Sbjct: 61 -DGSEEGVETKMAQQSLAAIDEADVVLFMVDGRAGLTVADEAIAQHLRRIEKPAILVVNK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHP--LEMIENN 178 +D A E + L ++ +I+A H G L F ++ + LE + N Sbjct: 120 VDGIDADAASAEFWQLGMDQMYQIAAAHGRGVGALIDRALNPFAEQMESEQAQLEDLTNE 179 Query: 179 KRNEESPKENITSEGKSSVKNISK-PLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGI 237 + EE E E ++ K + P+++A++GRPNVGKSTL NR+LG R++ G Sbjct: 180 EDPEEEQLEYSEEEAEAEYKRLQDLPIKLAIIGRPNVGKSTLTNRILGEERVVVYDMPGT 239 Query: 238 TRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATI 297 TRDS+ I + DTAG+R+ RI E++E+ +V K++Q++ ++++DA Sbjct: 240 TRDSIYIPMKRDEREYVLIDTAGVRRRKRINETVEKFSVVKTLQAIEDANVVLLVVDARE 299 Query: 298 PFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTIS 357 QDL ++ N+G ++V+A+NKWD +S ++ + ++ + + L + I+ IS Sbjct: 300 NISDQDLSLLGFALNSGRSIVIAVNKWDGLS--FDVKEHVKKELDRRLGFVDFARIHFIS 357 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 G G+ L SV E + TR+ TS L ++ + PP + R +LKY Sbjct: 358 ALHGTGVGHLFESVQEAYRSATTRVGTSVLTRIMKMATDDHQPPMVRGRRVKLKYAHAGG 417 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I N++P+SYKRYL+N R + + G PIR+ FQ+S+NP+ K Sbjct: 418 YNPPIIVIHGNQVNELPDSYKRYLMNYYRKSLEIMGTPIRIQFQNSENPFEGK 470 >gi|317060485|ref|ZP_07924970.1| GTP-binding protein [Fusobacterium sp. D12] gi|313686161|gb|EFS22996.1| GTP-binding protein [Fusobacterium sp. D12] Length = 442 Score = 286 bits (732), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 157/459 (34%), Positives = 255/459 (55%), Gaps = 33/459 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFN L+ ++A+V + PG+TRDRLY + NG F +VDT G+ Sbjct: 9 VAIVGRPNVGKSTLFNNLIGDRVAIVDDMPGVTRDRLYRETEWNGAEFVVVDTGGLEPAN 68 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N + ++ +Q E+A+NEA +ILF++D KAG+ P D I LRKK P+++ NK+D Sbjct: 69 NDFMMTKIKEQAEVAMNEADVILFVVDGKAGVNPLDEEIAYILRKKQKPVVLCVNKIDNY 128 Query: 125 IAQR-NFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF-KQKYPNHPLEMIENNKRNE 182 + Q+ + YE + L F+ +V IS H + ++ ++ I K ++P Sbjct: 129 LQQQDDVYEFWGLGFEYLVAISGAHKVNLGDMLDMVVDIIGKLEFPEE------------ 176 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 +E+I L++AV+G+PN GKS+L+NRL G R + +G TRD++ Sbjct: 177 ---EEDI--------------LKLAVIGKPNAGKSSLVNRLSGEERTIVSDIAGTTRDAI 219 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 +K + I DTAG+R+ S++ ESLE +V +++++++ + +++LDA +Q Sbjct: 220 DTLIEYKENRYMIIDTAGIRRKSKVEESLEYYSVLRAIKTIKRADVCLLMLDAQEGLTEQ 279 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D RI +V+ +NKWD+V +K ++ + + LP + I +S TG+ Sbjct: 280 DKRIAGIAAEERKPIVIVMNKWDLVKNK--DMKKYKEELYAELPFLSYAPIEFVSALTGQ 337 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 L+ I + + RI+T LN+ L+ L N P T R ++ Y TQ+ +PP Sbjct: 338 RTTKLLEIADGIYEEYTKRISTGLLNTVLKDAILMNNPSTRKGRLIKINYGTQVSVAPPK 397 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 F++FC +P I SY RY+ N+ R +F G PI + F+ Sbjct: 398 FVLFCNYPELIHFSYARYIENKFRESFGFEGSPILISFE 436 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 64/125 (51%), Gaps = 6/125 (4%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 I +A++G PN GKS+L NRL ++ +V + G TRD + + I+DTAGI Sbjct: 180 ILKLAVIGKPNAGKSSLVNRLSGEERTIVSDIAGTTRDAIDTLIEYKENRYMIIDTAGIR 239 Query: 62 DGKNCSIAKQMNDQTEL----AINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIV 117 + + + + + L I A + L ++D++ G+T D I ++ PI+IV Sbjct: 240 --RKSKVEESLEYYSVLRAIKTIKRADVCLLMLDAQEGLTEQDKRIAGIAAEERKPIVIV 297 Query: 118 SNKMD 122 NK D Sbjct: 298 MNKWD 302 >gi|294140150|ref|YP_003556128.1| GTP-binding protein EngA [Shewanella violacea DSS12] gi|293326619|dbj|BAJ01350.1| GTP-binding protein EngA [Shewanella violacea DSS12] Length = 490 Score = 286 bits (732), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 162/473 (34%), Positives = 262/473 (55%), Gaps = 18/473 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A ++G F +VDT GI Sbjct: 1 MIPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRASLSGYEFIVVDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG I M +Q+ AI EA ++LFL D++AG+T DHAI LR+++ +V+NK Sbjct: 61 -DGTEEGIEVHMAEQSLAAIEEADVVLFLTDARAGLTAADHAIADHLRRRDKTTFVVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D A E ++L E+ +++A G + + + + H R Sbjct: 120 VDGIDADSACAEFWALGLGEVYQMAASQGRGVTNMIEYALAPYAEALGLH---------R 170 Query: 181 NEESPKENITSEGKSSVKNISK------PLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQ 234 N+E E E + P+++A++G+PNVGKSTLINR+LG R++ Sbjct: 171 NDEGDIEVEEREYSEEEAEAEQKRLQDLPIKLAIIGKPNVGKSTLINRILGEERVVVYDS 230 Query: 235 SGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLD 294 G TRDS+ I + + DTAG+R+ S++ E++E+ +V K+++++ C ++++D Sbjct: 231 PGTTRDSIYIPMEREGREYVLIDTAGVRRRSKVHETVEKFSVIKTLKAIEDCNVVLLIID 290 Query: 295 ATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYIN 354 A +QDL ++ N G A+V+A+NKWD ++ ++ ++++ + L I I+ Sbjct: 291 AREGIAEQDLGLLGFALNAGRALVIAVNKWDGINQEIK--DRVKSELDRRLGFIDFARIH 348 Query: 355 TISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYIT 414 IS G G+ L SV E R++TS L +Q Q + PP + R +LKY Sbjct: 349 FISALHGTGVGHLYESVEEAYDSATRRVSTSMLTRIMQMAQDDHQPPLVNGRRVKLKYAH 408 Query: 415 QIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 +PP ++ K+P+SYKRY++N R + + G PI++ FQ NP+ Sbjct: 409 AGGYNPPIVVVHGNQVKKLPDSYKRYMMNYYRRSLKVMGTPIQVRFQDGANPF 461 >gi|257462859|ref|ZP_05627265.1| GTP-binding protein [Fusobacterium sp. D12] Length = 438 Score = 286 bits (731), Expect = 6e-75, Method: Compositional matrix adjust. Identities = 157/459 (34%), Positives = 255/459 (55%), Gaps = 33/459 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFN L+ ++A+V + PG+TRDRLY + NG F +VDT G+ Sbjct: 5 VAIVGRPNVGKSTLFNNLIGDRVAIVDDMPGVTRDRLYRETEWNGAEFVVVDTGGLEPAN 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N + ++ +Q E+A+NEA +ILF++D KAG+ P D I LRKK P+++ NK+D Sbjct: 65 NDFMMTKIKEQAEVAMNEADVILFVVDGKAGVNPLDEEIAYILRKKQKPVVLCVNKIDNY 124 Query: 125 IAQR-NFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF-KQKYPNHPLEMIENNKRNE 182 + Q+ + YE + L F+ +V IS H + ++ ++ I K ++P Sbjct: 125 LQQQDDVYEFWGLGFEYLVAISGAHKVNLGDMLDMVVDIIGKLEFPEE------------ 172 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 +E+I L++AV+G+PN GKS+L+NRL G R + +G TRD++ Sbjct: 173 ---EEDI--------------LKLAVIGKPNAGKSSLVNRLSGEERTIVSDIAGTTRDAI 215 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 +K + I DTAG+R+ S++ ESLE +V +++++++ + +++LDA +Q Sbjct: 216 DTLIEYKENRYMIIDTAGIRRKSKVEESLEYYSVLRAIKTIKRADVCLLMLDAQEGLTEQ 275 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D RI +V+ +NKWD+V +K ++ + + LP + I +S TG+ Sbjct: 276 DKRIAGIAAEERKPIVIVMNKWDLVKNK--DMKKYKEELYAELPFLSYAPIEFVSALTGQ 333 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 L+ I + + RI+T LN+ L+ L N P T R ++ Y TQ+ +PP Sbjct: 334 RTTKLLEIADGIYEEYTKRISTGLLNTVLKDAILMNNPSTRKGRLIKINYGTQVSVAPPK 393 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 F++FC +P I SY RY+ N+ R +F G PI + F+ Sbjct: 394 FVLFCNYPELIHFSYARYIENKFRESFGFEGSPILISFE 432 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 64/125 (51%), Gaps = 6/125 (4%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 I +A++G PN GKS+L NRL ++ +V + G TRD + + I+DTAGI Sbjct: 176 ILKLAVIGKPNAGKSSLVNRLSGEERTIVSDIAGTTRDAIDTLIEYKENRYMIIDTAGIR 235 Query: 62 DGKNCSIAKQMNDQTEL----AINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIV 117 + + + + + L I A + L ++D++ G+T D I ++ PI+IV Sbjct: 236 --RKSKVEESLEYYSVLRAIKTIKRADVCLLMLDAQEGLTEQDKRIAGIAAEERKPIVIV 293 Query: 118 SNKMD 122 NK D Sbjct: 294 MNKWD 298 >gi|157371840|ref|YP_001479829.1| GTP-binding protein EngA [Serratia proteamaculans 568] gi|166920103|sp|A8GHW1|DER_SERP5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|157323604|gb|ABV42701.1| small GTP-binding protein [Serratia proteamaculans 568] Length = 494 Score = 286 bits (731), Expect = 6e-75, Method: Compositional matrix adjust. Identities = 169/479 (35%), Positives = 258/479 (53%), Gaps = 16/479 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI +A+VG PNVGKSTLFNRL + A+V + PG+TRDR YG+A + G F IVDT GI Sbjct: 1 MIPVVALVGRPNVGKSTLFNRLTHTRDALVADFPGLTRDRKYGRAEVEGNEFIIVDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M Q+ LAI EA ++LF++D++AG+ P D I LR + +V+NK Sbjct: 61 -DGTEDGVETRMAGQSLLAIEEADIVLFMVDARAGLMPADLGIAQHLRNRQKATFLVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 D + YSL ++ I+A H G ++L + F + P E Sbjct: 120 TDGMDPDMAAADFYSLGLGDVHPIAASHGRGVAQLIEHVLVPFVGEKPEEVELTEEEANA 179 Query: 181 NEESPKENITSEG-----KSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQS 235 + +E T EG + P+++A+VGRPNVGKSTL NR+LG +R++ Sbjct: 180 AYWAEQEGETLEGAEEEPEDDFNPQDLPIKLAIVGRPNVGKSTLTNRILGEDRVVVYDMP 239 Query: 236 GITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDA 295 G TRDS+ I + DTAG+RK ++TE++E+ +V K++Q++ ++++DA Sbjct: 240 GTTRDSIYIPMVRDEREYVLIDTAGVRKRGKVTETVEKFSVIKTLQAIEDANVVLLVVDA 299 Query: 296 TIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVS----DKLNLLQDLRTKAIKNLPQIGDI 351 QDL ++ + N+G ++V+ +NKWD +S D + + DLR L + Sbjct: 300 REGISDQDLSLLGFILNSGRSLVIVVNKWDGMSEEDRDHVKEMLDLR------LGFVDFA 353 Query: 352 YINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLK 411 I+ IS G G+ +L VSVLE + R+ TS L +Q + PP + R +LK Sbjct: 354 RIHFISALHGSGVGNLFVSVLEAYECATRRVNTSMLTKIMQMAADDHQPPLVRGRRVKLK 413 Query: 412 YITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 Y +PP +I + +SYKRYL+N R + + G PIR+ F+ +NP+ K Sbjct: 414 YAHAGGYNPPIVVIHGNQVTDLSDSYKRYLMNYFRRSLKVMGTPIRIQFKEGENPFAGK 472 >gi|284006778|emb|CBA72042.1| GTP-binding protein [Arsenophonus nasoniae] Length = 493 Score = 286 bits (731), Expect = 7e-75, Method: Compositional matrix adjust. Identities = 166/478 (34%), Positives = 259/478 (54%), Gaps = 15/478 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI IA+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A G F I+DT GI Sbjct: 1 MIPVIALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGKAEFAGQEFIIIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG I M Q+ LAI EA ++ F++D ++G+ P DHAI LR + +++NK Sbjct: 61 -DGSEEGIENHMASQSLLAIEEADIVFFMVDVRSGLMPADHAIAKHLRSRKKETYLLANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 D + Y+L ++I I+A H G ++L + + + + +E+ E Sbjct: 120 TDGLDIDTVLGDFYALGMRDIYPIAASHGRGVTQLIEKVVAPYSPQTLANDMELSEEEAN 179 Query: 181 NE----ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSG 236 + K + S + + S P+++A+VGRPNVGKSTL NR+LG R++ G Sbjct: 180 AAYWLAQEEKVALESSEEEAFDPRSLPIKLAIVGRPNVGKSTLTNRILGEERVVVYDLPG 239 Query: 237 ITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDAT 296 TRDS+ I + DTAG+RK +ITE++E+ +V K++QS+ ++++DA Sbjct: 240 TTRDSIYIPMERDGCEYVLIDTAGVRKRGKITETVEKFSVIKTLQSIEDANVVLLVIDAR 299 Query: 297 IPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDK----LNLLQDLRTKAIKNLPQIGDIY 352 QDL ++ + N G ++V+A+NKWD +S + + + DLR L I Sbjct: 300 QGISDQDLSLLGFILNAGRSLVIAVNKWDGMSQEDRQSVKDMLDLR------LGFIDFAK 353 Query: 353 INTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKY 412 ++ IS G G+ +L S+ E + R+ T+ L ++ + ++ PP I R ++KY Sbjct: 354 VHFISALHGSGVGNLFESIQEAYESATRRVGTALLTRIMKMAEEEHQPPLIRGRRVKMKY 413 Query: 413 ITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I +P+SYKRYL+N R + G PIR+ F+ NPY K Sbjct: 414 AHAGGYNPPIVVIHGNQVADLPDSYKRYLMNYFRRTLQVMGTPIRIQFKEGDNPYAGK 471 >gi|239997025|ref|ZP_04717549.1| GTP-binding protein EngA [Alteromonas macleodii ATCC 27126] Length = 481 Score = 286 bits (731), Expect = 7e-75, Method: Compositional matrix adjust. Identities = 163/467 (34%), Positives = 256/467 (54%), Gaps = 12/467 (2%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + A+V ++PG+TRDR YGQA F +VDT GI Sbjct: 1 MLPVVALVGRPNVGKSTLFNRLTNTRDALVADYPGLTRDRKYGQAKFEKRQFIVVDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 G I +M Q+ LAI EA ++LFL+D++AG+ P D I LR+ N + +V+NK Sbjct: 61 T-GDEEGIDAEMAQQSLLAIEEADVVLFLVDARAGMLPADQGIADHLRRINKKVFVVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D E YSL +I +I+A H G S+L K + +P+ + E + Sbjct: 120 VDGIDGDSESAEFYSLGLGDIKQIAAAHGRGVSQLLQDALKPLESDFPDMEIIDEEPEEE 179 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 + + E P+++A+VG+PNVGKSTL NR+LG R++ G TRD Sbjct: 180 EDAETQRQRLQE---------LPIKLAIVGKPNVGKSTLTNRILGEERVVVFDMPGTTRD 230 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 SV I + DTAG+RK +I+E++E+ ++ K++Q++ ++++DA Sbjct: 231 SVYIPMERDEREYILIDTAGVRKRKKISEAVEKFSIVKTLQAIEEANVVLLVIDAREGIT 290 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 QDL ++ V N+G ++V+A+NKWD +S ++ D++ + + L I I+ IS Sbjct: 291 DQDLSLLGFVLNSGRSLVVAVNKWDGLS--TDVKDDIKREMDRRLGFIDFARIHFISALH 348 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G G+ +L SV E RI T+ L ++ Q + PP + R ++KY +P Sbjct: 349 GSGVGNLFESVQEAYMSATKRINTALLTQIMEMAQDDHQPPLVRGRRVKMKYAHAGGYNP 408 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 P +I + +P SYKR+L+N R + G PI++ F+ NP+ Sbjct: 409 PVIVIHGNQVDDLPSSYKRFLMNYFRKALEIMGTPIKIEFREGNNPF 455 >gi|332140453|ref|YP_004426191.1| GTP-binding protein Der [Alteromonas macleodii str. 'Deep ecotype'] gi|332141960|ref|YP_004427698.1| GTP-binding protein Der [Alteromonas macleodii str. 'Deep ecotype'] gi|238693251|sp|B4RV85|DER_ALTMD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|327550475|gb|AEA97193.1| GTP-binding protein Der [Alteromonas macleodii str. 'Deep ecotype'] gi|327551982|gb|AEA98700.1| GTP-binding protein Der [Alteromonas macleodii str. 'Deep ecotype'] Length = 481 Score = 285 bits (730), Expect = 8e-75, Method: Compositional matrix adjust. Identities = 163/467 (34%), Positives = 254/467 (54%), Gaps = 12/467 (2%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + A+V ++PG+TRDR YGQA F +VDT GI Sbjct: 1 MLPVVALVGRPNVGKSTLFNRLTNTRDALVADYPGLTRDRKYGQAKFEKRQFIVVDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 G I +M Q+ LAI EA ++LFL+D++AG+ P D I LR+ N I +V+NK Sbjct: 61 T-GDEEGIDAEMAQQSLLAIEEADVVLFLVDARAGLLPADQGIADHLRRINKQIFVVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D E YSL I +I+A H G S+L K + +P+ + + Sbjct: 120 VDGIDGDSESAEFYSLGLGAIKQIAAAHGRGVSQLLQDALKPLESDFPDMEIIDEAPEEE 179 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 + + E P+++A+VG+PNVGKSTL NR+LG R++ G TRD Sbjct: 180 EDAESQRQRLQE---------LPIKLAIVGKPNVGKSTLTNRILGEERVVVYDMPGTTRD 230 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 SV I + DTAG+RK +I+E++E+ ++ K++Q++ ++++DA Sbjct: 231 SVYIPMERDEREYILIDTAGVRKRKKISEAVEKFSIVKTLQAIEEANVVLLVIDAREGIT 290 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 QDL ++ V N+G ++V+A+NKWD +S ++ D++ + + L I I+ IS Sbjct: 291 DQDLSLLGFVLNSGRSLVVAVNKWDGLS--TDIKDDIKREMDRRLGFIDFARIHFISALH 348 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G G+ +L SV E RI T+ L ++ Q + PP + R ++KY +P Sbjct: 349 GSGVGNLFESVQEAYMSATKRINTALLTQIMEMAQDDHQPPLVRGRRVKMKYAHAGGYNP 408 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 P +I + +P SYKR+L+N R + G PI++ F+ NP+ Sbjct: 409 PVIVIHGNQVDDLPSSYKRFLMNYFRKALEIMGTPIKIEFREGNNPF 455 >gi|290475995|ref|YP_003468891.1| GTP-binding protein, essential for cell growth [Xenorhabdus bovienii SS-2004] gi|289175324|emb|CBJ82127.1| GTP-binding protein, essential for cell growth [Xenorhabdus bovienii SS-2004] Length = 496 Score = 285 bits (729), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 168/481 (34%), Positives = 264/481 (54%), Gaps = 18/481 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A + G F I+DT GI Sbjct: 1 MIPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGQEFIIIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + M Q+ +AI EA ++LF++D+++G+ P DHAI LR + +V+NK Sbjct: 61 -DGTEDGVETHMAAQSLMAIEEADIVLFMVDARSGMMPADHAIAKHLRSREKATFLVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN--- 177 D E YSL +I I+A H G ++L + F +K +E+ E Sbjct: 120 TDGIDTDTAIPEFYSLGLGDIYSIAASHGRGVTQLIEHVLLPFSEKEKTEEVELTEEEAN 179 Query: 178 ----NKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGS 233 ++ + + E ++ + PL++A+VGRPNVGKSTL NR+LG R++ Sbjct: 180 AAYWSEIEQAELEAAEEEEKEAVFDPTTLPLKLAIVGRPNVGKSTLTNRILGEERVVVYD 239 Query: 234 QSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLL 293 G TRDS+ I + DTAG+RK ++TE++E+ +V K++Q++ ++++ Sbjct: 240 MPGTTRDSIYIPMERDGREYILIDTAGVRKRGKVTETVEKFSVIKTLQAIEDANVVLLIV 299 Query: 294 DATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVS----DKLNLLQDLRTKAIKNLPQIG 349 DA QDL ++ + N+G ++V+A+NKWD +S D + + DLR L + Sbjct: 300 DAREGVSDQDLSLLGFILNSGRSLVIAVNKWDGMSQEDRDHVKDMLDLR------LGFVD 353 Query: 350 DIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNR 409 ++ IS G G+ +L S+LE + R++TS L + + + PP I R + Sbjct: 354 FARVHFISALHGSGVGNLFDSILEAYESATHRVSTSMLTRIMHMAEEDHQPPMIRGRRVK 413 Query: 410 LKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIK 469 +KY +PP +I +P+SYKRYL+N R + + G PIR+ F+ NPY Sbjct: 414 MKYAHAGGYNPPIVVIHGNQVTNLPDSYKRYLMNYFRRSLKVMGTPIRIQFKEGTNPYAD 473 Query: 470 K 470 K Sbjct: 474 K 474 >gi|83590169|ref|YP_430178.1| small GTP-binding protein domain-containing protein [Moorella thermoacetica ATCC 39073] gi|123524458|sp|Q2RIV4|DER_MOOTA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|83573083|gb|ABC19635.1| Small GTP-binding protein domain [Moorella thermoacetica ATCC 39073] Length = 438 Score = 285 bits (729), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 156/461 (33%), Positives = 249/461 (54%), Gaps = 29/461 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKSTLFNR+ ++A+V + PG+TRDRLY A G F +VDT GIA + Sbjct: 6 VAIIGRPNVGKSTLFNRITGGRVAIVEDTPGVTRDRLYRDAEWCGRQFTLVDTGGIATHQ 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + ++ Q E A+ EA +I+FL+DS+ GIT D I + LR+ + P+I+V+NK++ Sbjct: 66 DDPLVARVRSQAEQALKEADVIIFLVDSRTGITADDEEIAALLRRSDRPVILVANKVEDF 125 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 +E Y L + V ISA H L T +L + ++ Sbjct: 126 SDPTVTHEFYRLGLGDPVPISAAHGLNTGDLLDRVVELL--------------------- 164 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P EG + L++A+VGRPNVGKS+L+NRLLG R++ G TRD+V Sbjct: 165 PAVPAGEEGDA--------LKVAIVGRPNVGKSSLVNRLLGEERVIVSDLPGTTRDAVDT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + DTAGMR+ SRIT E+ +V +++++V + +V+LD T +QD Sbjct: 217 YIRRGEREYILIDTAGMRRKSRITVPTERYSVLRALRAVERADVVLVILDGTEGVTEQDK 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 +I G A ++ +NKWD+V + R + L + + IS TG+ + Sbjct: 277 KIAGYGHEKGKATIIVVNKWDLVPKDERTMDHYREAVRQELSFMAYAPVLFISALTGQRV 336 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 D +++++ + + R+ T LN+ +++ L PPP++ + ++ Y TQ++ PP+F+ Sbjct: 337 DQVLMTIDAVGEAANRRVATGTLNAVVREAVLLTPPPSVKGQEVKIYYATQVKVKPPTFV 396 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 F P + SY+RYL N+LR F G PIR+ F+ + Sbjct: 397 FFTNRPEGVHFSYQRYLENQLRQAFGFEGTPIRLIFRRGRE 437 >gi|322831770|ref|YP_004211797.1| ribosome-associated GTPase EngA [Rahnella sp. Y9602] gi|321166971|gb|ADW72670.1| ribosome-associated GTPase EngA [Rahnella sp. Y9602] Length = 494 Score = 285 bits (729), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 166/474 (35%), Positives = 258/474 (54%), Gaps = 7/474 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI +A+VG PNVGKSTLFNRL K + A+V + PG+TRDR YG+A I G F IVDT GI Sbjct: 1 MIPVVALVGRPNVGKSTLFNRLTKTRDALVADFPGLTRDRKYGRAEIEGNEFIIVDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M Q+ LAI EA ++LF++D++AG+ P D I LR + +V+NK Sbjct: 61 -DGTEDGVETRMAGQSLLAIEEADIVLFMVDARAGLMPADQGIAQHLRSREKATFLVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 D + YSL ++ I+A H G ++L + F + P E Sbjct: 120 TDGLDPDSATGDFYSLGLGDVYAIAASHGRGVTQLIEHVLIPFVGEKPEEVELTEEEANA 179 Query: 181 ----NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSG 236 +E+ + I + + + S P+++A+VGRPNVGKSTL NR+LG R++ G Sbjct: 180 AYWAEQEATGDEIPEDEEDNFDPQSLPIKLAIVGRPNVGKSTLTNRILGEERVVVYDMPG 239 Query: 237 ITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDAT 296 TRDS+ I + DTAG+RK ++TE++E+ +V K++Q++ ++++DA Sbjct: 240 TTRDSIYIPMVRDEREYVLIDTAGVRKRGKVTETVEKFSVIKTLQAIEDANVVMLVIDAR 299 Query: 297 IPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTI 356 QDL ++ + N+G ++V+ +NKWD +S++ ++ + L + I+ I Sbjct: 300 EGISDQDLSLLGFILNSGRSLVIVVNKWDGMSEEAR--AQVKDQLDLRLGFVDFARIHFI 357 Query: 357 SGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQI 416 S G G+ +L SV E TR++TS L +Q + PP + R +LKY Sbjct: 358 SALHGSGVGNLFESVNEAYTCATTRVSTSLLTRIMQMAADDHQPPLVNGRRVKLKYAHAG 417 Query: 417 QSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I + +SYKRYL+N R + + G PIR+ F+ +NPY K Sbjct: 418 GYNPPIVVIHGNQVKDLADSYKRYLMNYFRRSLKVMGTPIRIQFKEGENPYEGK 471 >gi|113461468|ref|YP_719537.1| GTP-binding protein EngA [Haemophilus somnus 129PT] gi|112823511|gb|ABI25600.1| GTP-binding protein [Haemophilus somnus 129PT] Length = 511 Score = 285 bits (729), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 167/481 (34%), Positives = 266/481 (55%), Gaps = 21/481 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YGQA NG F ++DT GI DG Sbjct: 6 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAHFNGYDFIVIDTGGI-DGT 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKK-NIPIIIVSNKMDT 123 + ++M +Q+ LAI EA ++LFL+D++AG+T D I +LRK+ N ++V+NK D Sbjct: 65 EEGVEEKMAEQSLLAIEEADIVLFLVDARAGLTSADVGIAQYLRKRQNKTTVLVANKTDG 124 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELH-----SVIFKIFKQKYPNHPLEMIENN 178 A + E Y L EI +I+A G S L SV K+ +H +EN+ Sbjct: 125 IDADSHCAEFYQLGLGEIEKIAASQGRGISALMEKVLPSVADKLSLANAEDHSESAVENS 184 Query: 179 KRNEESPKENITSEGKSSVKNISKPL------------RIAVVGRPNVGKSTLINRLLGY 226 + E +++ + ++ + + L +IA+VGRPNVGKSTL NR+LG Sbjct: 185 DESAEEWEKDFNFNSEEDIQLLDEALVEEQEESEDKNIKIAIVGRPNVGKSTLTNRILGE 244 Query: 227 NRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTC 286 +R++ G TRDS+ I + DTAG+RK ++ ++E+ +V K++Q+++ Sbjct: 245 DRVVVYDLPGTTRDSIYIPMERDGQQYTLIDTAGVRKRGKVHLTVEKFSVIKTLQAIQDA 304 Query: 287 ETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLP 346 ++ +DA QDL ++ + NTG ++V+ +NKWD ++ ++ ++++ + L Sbjct: 305 NVILLTIDARQGISDQDLSLLGFILNTGRSLVIVVNKWDGLNQ--DIKDQVKSELDRRLD 362 Query: 347 QIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNR 406 I ++ IS G G+ +L S+ E ++TTS L LQ ++ PP I R Sbjct: 363 FIDFARVHFISALHGSGVGNLFDSIKEAYACATKKMTTSLLTRILQMATDEHQPPMIGGR 422 Query: 407 YNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNP 466 +LKY +PP ++ +P+SYKRYL N R + + G PIR+ FQ NP Sbjct: 423 RIKLKYAHPGGYNPPIIVVHGNQIEGLPDSYKRYLSNYYRRSLKIIGSPIRLLFQEGNNP 482 Query: 467 Y 467 + Sbjct: 483 F 483 >gi|258619961|ref|ZP_05715001.1| GTP-binding protein [Vibrio mimicus VM573] gi|258627193|ref|ZP_05721981.1| GTP-binding protein [Vibrio mimicus VM603] gi|262165075|ref|ZP_06032812.1| GTP-binding protein EngA [Vibrio mimicus VM223] gi|262172166|ref|ZP_06039844.1| GTP-binding protein EngA [Vibrio mimicus MB-451] gi|258580495|gb|EEW05456.1| GTP-binding protein [Vibrio mimicus VM603] gi|258587694|gb|EEW12403.1| GTP-binding protein [Vibrio mimicus VM573] gi|261893242|gb|EEY39228.1| GTP-binding protein EngA [Vibrio mimicus MB-451] gi|262024791|gb|EEY43459.1| GTP-binding protein EngA [Vibrio mimicus VM223] Length = 494 Score = 285 bits (729), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 167/473 (35%), Positives = 267/473 (56%), Gaps = 6/473 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YGQA + F ++DT GI Sbjct: 1 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGEHEFIVIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M Q+ AI+EA ++LF++D +AG+T D AI LR+ P I+V NK Sbjct: 61 -DGSEEGVETKMAQQSLAAIDEADVVLFMVDGRAGLTVADEAIAQHLRRIEKPAILVVNK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHP--LEMIENN 178 +D A E + L +++ +I+A H G L F ++ + LE + N Sbjct: 120 VDGIDADAASAEFWQLGMEQMYQIAAAHGRGVGALIDRALNPFAEQMESEQAQLEDLTNE 179 Query: 179 KRNEESPKENITSEGKSSVKNISK-PLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGI 237 + EE E E ++ K + P+++A++GRPNVGKSTL NR+LG R++ G Sbjct: 180 EDPEEEKLEYSEEEAEAEYKRLQDLPIKLAIIGRPNVGKSTLTNRILGEERVVVYDMPGT 239 Query: 238 TRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATI 297 TRDS+ I + DTAG+R+ RI E++E+ +V K++Q++ ++++DA Sbjct: 240 TRDSIYIPMKRDEREYVLIDTAGVRRRKRINETVEKFSVVKTLQAIEDANVVLLVVDARE 299 Query: 298 PFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTIS 357 QDL ++ N+G ++V+A+NKWD ++ ++ + ++ + + L + I+ IS Sbjct: 300 NISDQDLSLLGFALNSGRSIVIAVNKWDGLN--TDVKEHVKKELDRRLGFVDFARIHFIS 357 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 G G+ L SV E + TR+ TS L ++ + PP + R +LKY Sbjct: 358 ALHGTGVGHLFESVQEAYRSATTRVGTSVLTRIMKMATDDHQPPMVRGRRVKLKYAHAGG 417 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I N++P+SYKRYL+N R + + G PIR+ FQ+S+NP+ K Sbjct: 418 YNPPIIVIHGNQVNELPDSYKRYLMNYYRKSLEIMGTPIRIQFQNSENPFEGK 470 >gi|328472592|gb|EGF43455.1| GTP-binding protein Der [Vibrio parahaemolyticus 10329] Length = 498 Score = 285 bits (728), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 165/474 (34%), Positives = 269/474 (56%), Gaps = 10/474 (2%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGV-IFNIVDTAG 59 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YGQA ++ F ++DT G Sbjct: 1 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQARLDEEHEFIVIDTGG 60 Query: 60 IADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 I DG + +M +Q+ AI+EA ++LFL+D +AG+T D AI + LRK P ++V N Sbjct: 61 I-DGTEEGVETKMAEQSLAAIDEADVVLFLVDGRAGLTSADEAIAAHLRKIEKPAMLVVN 119 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLG-TSELHSVIFKIFKQ----KYPNHPLEM 174 K+D A + + L ++ +I+A H G T+ L + F + +E Sbjct: 120 KIDGIDADAACADFWQLGVDDMYQIAAAHGRGVTALLERALAPFFDDLLTSESEEGEIED 179 Query: 175 IENNKRNEESPKENITSEGKSSVKNI-SKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGS 233 + + E +P E E ++ + + +P+++A++GRPNVGKSTL NR+LG R++ Sbjct: 180 LTEFEDAEIAPDEYTEEEAEAEFQRLQEQPIKLAIIGRPNVGKSTLTNRILGEERVVVYD 239 Query: 234 QSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLL 293 G TRDS+ I I DTAG+R+ RI E++E+ +V K++++V ++++ Sbjct: 240 MPGTTRDSIYIPMERDGREYVIIDTAGVRRRGRINETVEKFSVVKTLKAVEDANVVLLVI 299 Query: 294 DATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYI 353 DA QDL ++ N G ++VLA+NKWD + +++ ++++ + + L + I Sbjct: 300 DARENISDQDLSLLGFALNAGRSIVLAVNKWDGLDNEVK--ENVKKELDRRLGFVDFARI 357 Query: 354 NTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYI 413 + IS G G+ L S+ E K TR+ TS L ++ + PP + R +LKY Sbjct: 358 HFISALHGTGVGHLFESIQEAYKSATTRVGTSVLTRIMKMATDDHQPPMVRGRRIKLKYA 417 Query: 414 TQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 +PP +I ++P+SYKRYL+N R + + G PIR+ FQ+S+NP+ Sbjct: 418 HAGGYNPPIVVIHGNMVRELPDSYKRYLMNYFRKSLEIMGTPIRINFQNSENPF 471 >gi|238788166|ref|ZP_04631961.1| GTP-binding protein engA [Yersinia frederiksenii ATCC 33641] gi|238723753|gb|EEQ15398.1| GTP-binding protein engA [Yersinia frederiksenii ATCC 33641] Length = 494 Score = 285 bits (728), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 168/478 (35%), Positives = 263/478 (55%), Gaps = 15/478 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI IA+VG PNVGKSTLFNRL + A+V + PG+TRDR YG+A + G F ++DT GI Sbjct: 1 MIPVIALVGRPNVGKSTLFNRLTHTRDALVADFPGLTRDRKYGRAEVEGHEFIVIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M Q+ LAI EA ++LF++D++AG+ P D I LR + +V+NK Sbjct: 61 -DGTEDGVETKMAGQSLLAIEEADIVLFMVDARAGLMPADQGIAQHLRSREKATFLVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL-HSVIFKIFKQKYPNHPLEMIENNK 179 D + YSL E+ I+A H G ++L V+ + P L E N Sbjct: 120 TDGIDPDTATADFYSLGLGEVHAIAASHGRGVTQLIEDVMAPYMDAEEPEVELTEEEANA 179 Query: 180 R---NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSG 236 +E +++I + + +S P+++A+VGRPNVGKSTL NR+LG +R++ G Sbjct: 180 AYWAAQEETEDSIPEDEEDDFDPLSLPIKLAIVGRPNVGKSTLTNRILGEDRVVVYDMPG 239 Query: 237 ITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDAT 296 TRDS+ I + DTAG+RK +ITE++E+ +V K++Q++ ++++DA Sbjct: 240 TTRDSIYIPMTRDEREYILIDTAGVRKRGKITEAVEKFSVIKTLQAIEDSNVVLLVIDAR 299 Query: 297 IPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSD----KLNLLQDLRTKAIKNLPQIGDIY 352 QDL ++ + N+G ++V+A+NKWD +S+ ++ + DLR L + Sbjct: 300 DGISDQDLSLLGFILNSGRSLVIAVNKWDGMSEEARAQVKDMLDLR------LGFVDFAR 353 Query: 353 INTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKY 412 I+ IS G G+ +L S+ E R+ TS L +Q + + PP + R +LKY Sbjct: 354 IHFISALHGSGVGNLFESIQEAYDCSTKRVGTSLLTRIMQMAEEDHQPPLVRGRRVKLKY 413 Query: 413 ITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I + +SYKRYL+N R + + G PIR+ F+ +NP+ K Sbjct: 414 AHAGGYNPPIVVIHGNQVTDLSDSYKRYLMNYFRRSLKVMGTPIRIQFKEGENPFAGK 471 >gi|330446667|ref|ZP_08310319.1| small GTP-binding domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490858|dbj|GAA04816.1| small GTP-binding domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 500 Score = 285 bits (728), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 165/482 (34%), Positives = 270/482 (56%), Gaps = 18/482 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A + F ++DT GI Sbjct: 1 MIPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAELEEHEFIVIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ AI EA ++LFL+D +AG+T D AI LR ++ P +V NK Sbjct: 61 -DGTEEGVETKMAEQSLAAIEEADVVLFLVDGRAGLTAADEAIAKHLRSRDKPTFLVVNK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D A E + L + +I+A + G + L F K E+ EN + Sbjct: 120 VDGIDADSACAEFWRLGVDAMYQIAATQNRGVTALMERALAPFSDKLN---AELAENGEE 176 Query: 181 NEES----------PKENIT-SEGKSSVKNI-SKPLRIAVVGRPNVGKSTLINRLLGYNR 228 E S K N++ ++ +++ K + +P+++A++GRPNVGKSTL NR+LG R Sbjct: 177 QEVSIEDLTSVEDIEKANLSEADAEAAYKRLQEQPIKLAIIGRPNVGKSTLTNRILGEER 236 Query: 229 LLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCET 288 ++ G TRDS+ I + DTAG+R+ + +++E+ +V +++++V Sbjct: 237 VVVYDMPGTTRDSIYIPMERDGQEYVLIDTAGIRRRKNMHQAVEKFSVIQTLKAVEDANV 296 Query: 289 TIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQI 348 ++++DA QDL ++ N G ++V+A+NKWD + +++ + ++++ + L + Sbjct: 297 VLLVIDARENISDQDLSLLGFALNAGRSLVIAVNKWDGLDNEVK--ERVKSELDRRLGFV 354 Query: 349 GDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYN 408 I+ IS G G+ L SV+E + RI+TS L +Q Q + PP I R Sbjct: 355 DFARIHFISALHGTGVGHLYESVIEAYQSATKRISTSLLTRIMQMAQDDHQPPMIRGRRV 414 Query: 409 RLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYI 468 +LKY +PP ++ N++P SYKRYL+N R + + G PIR+ FQ+S+NP+ Sbjct: 415 KLKYAHAGGYNPPIIVVHGNQVNELPGSYKRYLMNYYRKSLEMMGTPIRIQFQNSENPFE 474 Query: 469 KK 470 K Sbjct: 475 TK 476 >gi|301155940|emb|CBW15410.1| predicted GTP-binding protein [Haemophilus parainfluenzae T3T1] Length = 506 Score = 285 bits (728), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 168/484 (34%), Positives = 268/484 (55%), Gaps = 31/484 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG A I+G F ++DT GI DG Sbjct: 6 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHANISGYDFIVIDTGGI-DGT 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKK-NIPIIIVSNKMDT 123 + ++M +Q+ LAI EA ++LFL+D++AG+T D I ++LR++ N ++V+NK D Sbjct: 65 EEGVEEKMAEQSLLAIEEADVVLFLVDARAGLTAADIGIANYLRQRTNKTTVVVANKTDG 124 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 A + E Y L EI +I+A G ++L + +K + EN++ ++E Sbjct: 125 IDADSHCAEFYQLGLGEIEQIAASQGRGVTQLMEQVLAPLAEKLQENE---AENDRTSDE 181 Query: 184 SPKE------NITSEGKSSV----------KNISKPLRIAVVGRPNVGKSTLINRLLGYN 227 K+ + SE +S+ + K ++IA+VGRPNVGKSTL NR+LG + Sbjct: 182 EEKDEWDHEFDFDSEEDTSLIDDALDEELEEEQDKNIKIAIVGRPNVGKSTLTNRILGED 241 Query: 228 RLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCE 287 R++ G TRDS+ I + DTAG+RK ++ ++E+ +V K++Q+++ Sbjct: 242 RVVVYDMPGTTRDSIYIPMERDGQQYTLIDTAGVRKRGKVHLAVEKFSVIKTLQAIQDAN 301 Query: 288 TTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQ 347 ++ +DA QDL ++ + N G ++V+ +NKWD L QD++ + L + Sbjct: 302 VVLLTIDARENISDQDLSLLGFILNAGRSLVIVVNKWD------GLDQDVKDRVKSELDR 355 Query: 348 IGDI----YINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTI 403 D ++ IS G G+ +L S+ E ++TTS L LQ ++ PP I Sbjct: 356 RLDFIDFARVHFISALHGSGVGNLFDSIKEAYACATQKMTTSLLTRILQMATDEHQPPMI 415 Query: 404 FNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSS 463 R +LKY +PP ++ +K+P+SYKRYL N R + + G PIR+ FQ Sbjct: 416 GGRRIKLKYAHPGGYNPPIIVVHGNQMDKLPDSYKRYLSNYYRKSLKIIGSPIRLLFQEG 475 Query: 464 KNPY 467 NP+ Sbjct: 476 SNPF 479 >gi|319779671|ref|YP_004130584.1| GTP-binding protein EngA [Taylorella equigenitalis MCE9] gi|317109695|gb|ADU92441.1| GTP-binding protein EngA [Taylorella equigenitalis MCE9] Length = 452 Score = 285 bits (728), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 161/470 (34%), Positives = 253/470 (53%), Gaps = 29/470 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTLFNRL + + A+V ++ G+TRDR YG+ I F ++DT G Sbjct: 7 IALVGRPNVGKSTLFNRLTRSRNAIVADYSGLTRDRHYGEGRIGDRPFLVIDTGGFEPKV 66 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I K+M QTELAI+E+ +++FL+D+++GI DH I + LRK +P+++ NK + Sbjct: 67 KTGILKEMARQTELAISESDVVIFLVDARSGINAQDHDIATKLRKVGVPVLLAVNKAEGL 126 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + E + L E + IS+ H G + L + Q Sbjct: 127 QPNQANAEFHELGLGEPLAISSAHGDGVANLIDIALSKIPQS------------------ 168 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 +E + SE + + +++A+VGRPNVGKSTLIN L+G R++ G TRD++ I Sbjct: 169 -EEELNSEPDADQEFTDHKIKLAIVGRPNVGKSTLINSLIGEQRVIAFDLPGTTRDAIEI 227 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + N ++ DTAG+RK R+ ES+E+ +V K++Q++ C +++LDA +QD Sbjct: 228 DFEHNNKKYKLIDTAGLRKRGRVFESIEKFSVIKTLQAIEACNVVVLVLDAQSEISEQDA 287 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQ----IGDIYINTISGRT 360 I + +G A+V+A+NKWD L +D R I+ + + ++ IS Sbjct: 288 HIAGFILESGRALVVAINKWD------GLDEDKRDWVIREFERKLRFLSFAKVHFISALK 341 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 +G+ L+ SV ++ ++ T L LQ Q PPP +++Y Q +P Sbjct: 342 SQGIKSLLKSVNLAHEAAFRKLPTPKLTRELQAAVDQQPPPRKGIFRPKMRYAHQGGQNP 401 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 P +I + IP+SY+RYL R R F L G P+R+ F+S+KNPY+ K Sbjct: 402 PLVIIHGNALDAIPDSYRRYLETRFRKAFKLEGTPLRIEFKSTKNPYLDK 451 >gi|206579507|ref|YP_002237139.1| GTP-binding protein EngA [Klebsiella pneumoniae 342] gi|206568565|gb|ACI10341.1| GTP-binding protein EngA [Klebsiella pneumoniae 342] Length = 498 Score = 285 bits (728), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 163/480 (33%), Positives = 260/480 (54%), Gaps = 21/480 (4%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A + G F +DT GI Sbjct: 7 MIPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGI 66 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ LAI EA ++LF++D++AG+ P D AI LR + P +V+NK Sbjct: 67 -DGTEEGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADIAIAKHLRSREKPTFLVANK 125 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLG-TSELHSVIFKIFKQKYPNHPLEM----- 174 D + + +SL +I I+A H G TS L + + P ++ Sbjct: 126 TDGIDVDQAMADFWSLGLGDIYPIAASHGRGVTSLLEQALLPWVDEISPQEEVDEDAEYW 185 Query: 175 ----IENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLL 230 E N EE P+++ + P+++A+VGRPNVGKSTL NR+LG +R++ Sbjct: 186 AKFEAEQNGEAEEEPEDDFNPQ--------DLPIKLAIVGRPNVGKSTLTNRILGEDRVV 237 Query: 231 TGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTI 290 G TRDS+ I + DTAG+RK +IT+ +E+ +V K++Q++ + Sbjct: 238 VYDMPGTTRDSIYIPMQRDEREYVLIDTAGVRKRGKITDVVEKFSVIKTLQAIEDANVVL 297 Query: 291 VLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGD 350 +++DA QDL ++ + N+G ++V+ +NKWD +S ++ + ++ L I Sbjct: 298 LVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWDGLSQEVK--EQVKETLDYRLGFIDF 355 Query: 351 IYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRL 410 ++ IS G G+ +L SV E R++T+ L + + PP + R +L Sbjct: 356 ARVHFISALHGSGVGNLFESVREAYDSATRRVSTAMLTRIMNMAAEDHQPPLVRGRRVKL 415 Query: 411 KYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 KY +PP +I +P+SYKRYL+N R + + G PIR+ F+ +NP+ K Sbjct: 416 KYAHAGGYNPPIVVIHGNQVKDLPDSYKRYLMNYFRKSLDVMGTPIRIQFKEGENPFANK 475 >gi|152971372|ref|YP_001336481.1| GTP-binding protein EngA [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238895966|ref|YP_002920702.1| GTP-binding protein EngA [Klebsiella pneumoniae NTUH-K2044] gi|262040248|ref|ZP_06013499.1| ribosome-associated GTPase EngA [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|330007822|ref|ZP_08306080.1| ribosome biogenesis GTPase Der [Klebsiella sp. MS 92-3] gi|166198723|sp|A6TCD0|DER_KLEP7 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|150956221|gb|ABR78251.1| GTP-binding protein EngA [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238548284|dbj|BAH64635.1| GTP-binding protein EngA [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259042357|gb|EEW43377.1| ribosome-associated GTPase EngA [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328535310|gb|EGF61796.1| ribosome biogenesis GTPase Der [Klebsiella sp. MS 92-3] Length = 492 Score = 285 bits (728), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 163/480 (33%), Positives = 260/480 (54%), Gaps = 21/480 (4%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A + G F +DT GI Sbjct: 1 MIPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ LAI EA ++LF++D++AG+ P D AI LR + P +V+NK Sbjct: 61 -DGTEEGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADIAIAKHLRSREKPTFLVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLG-TSELHSVIFKIFKQKYPNHPLEM----- 174 D + + +SL +I I+A H G TS L + + P ++ Sbjct: 120 TDGIDVDQAMADFWSLGLGDIYPIAASHGRGVTSLLEQALLPWVDEVNPQEEVDEDAEYW 179 Query: 175 ----IENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLL 230 E N EE P+++ + P+++A+VGRPNVGKSTL NR+LG +R++ Sbjct: 180 AKFEAEQNGEAEEEPEDDFNPQ--------DLPIKLAIVGRPNVGKSTLTNRILGEDRVV 231 Query: 231 TGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTI 290 G TRDS+ I + DTAG+RK +IT+ +E+ +V K++Q++ + Sbjct: 232 VYDMPGTTRDSIYIPMQRDEREYVLIDTAGVRKRGKITDVVEKFSVIKTLQAIEDANVVL 291 Query: 291 VLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGD 350 +++DA QDL ++ + N+G ++V+ +NKWD +S ++ + ++ L I Sbjct: 292 LVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWDGLSQEVK--EQVKETLDYRLGFIDF 349 Query: 351 IYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRL 410 ++ IS G G+ +L SV E R++T+ L + + PP + R +L Sbjct: 350 ARVHFISALHGSGVGNLFESVREAYDSATRRVSTAMLTRIMNMAAEDHQPPLVRGRRVKL 409 Query: 411 KYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 KY +PP +I +P+SYKRYL+N R + + G PIR+ F+ +NP+ K Sbjct: 410 KYAHAGGYNPPIVVIHGNQVKDLPDSYKRYLMNYFRKSLDVMGTPIRIQFKEGENPFANK 469 >gi|114046809|ref|YP_737359.1| GTP-binding protein EngA [Shewanella sp. MR-7] gi|123131595|sp|Q0HX53|DER_SHESR RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|113888251|gb|ABI42302.1| small GTP-binding protein [Shewanella sp. MR-7] Length = 488 Score = 285 bits (728), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 162/472 (34%), Positives = 261/472 (55%), Gaps = 11/472 (2%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A ++G F +VDT GI Sbjct: 1 MIPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAFLSGYEFIVVDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG I +M +Q+ AI EA ++LF+ D++AG+T D +I LR + +V+NK Sbjct: 61 -DGTEEGIETKMAEQSLAAIEEADVVLFMTDARAGLTAADLSIAQHLRSRQKTTFVVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D A E +SL E+ +++A G + + + + IE Sbjct: 120 IDGIDADSACAEFWSLGLGEVYQMAAAQGRGVTNMIEYALTPYAEAMG------IERQGE 173 Query: 181 NEESPKENITSE-GKSSVKNISK-PLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 EE + T E ++ K + P+++A++G+PNVGKSTL NR+LG R++ + G T Sbjct: 174 EEEVDERQYTEEEAEAEQKRLQDLPIKLAIIGKPNVGKSTLTNRILGEERVVVYDEPGTT 233 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RDS+ I I DTAG+R+ S++ E +E+ +V K++++V ++++DA Sbjct: 234 RDSIYIPMERDGREYVIIDTAGVRRRSKVHEVIEKFSVIKTLKAVEDANVVLLIIDAREG 293 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 +QDL ++ N G A+V+A+NKWD + + ++++ + L I I+ IS Sbjct: 294 VAEQDLGLLGFALNAGRALVIAVNKWDGIDQGIK--DRVKSELDRRLGFIDFARIHFISA 351 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 G G+ L S+ E R++TS L +Q +Q + PP + R +LKY Sbjct: 352 LHGTGVGHLFESIEEAYDSATRRVSTSMLTRIMQMSQDDHQPPLVNGRRVKLKYAHAGGY 411 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I +K+P+SYKRY++N R + + G PI++ FQ NP+ K Sbjct: 412 NPPIVVIHGNQVSKLPDSYKRYMMNYFRRSLKVVGTPIQLRFQEGDNPFENK 463 >gi|288934098|ref|YP_003438157.1| ribosome-associated GTPase EngA [Klebsiella variicola At-22] gi|290508296|ref|ZP_06547667.1| ribosome-associated GTPase EngA [Klebsiella sp. 1_1_55] gi|288888827|gb|ADC57145.1| ribosome-associated GTPase EngA [Klebsiella variicola At-22] gi|289777690|gb|EFD85687.1| ribosome-associated GTPase EngA [Klebsiella sp. 1_1_55] Length = 492 Score = 285 bits (728), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 163/480 (33%), Positives = 260/480 (54%), Gaps = 21/480 (4%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A + G F +DT GI Sbjct: 1 MIPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ LAI EA ++LF++D++AG+ P D AI LR + P +V+NK Sbjct: 61 -DGTEEGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADIAIAKHLRSREKPTFLVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLG-TSELHSVIFKIFKQKYPNHPLEM----- 174 D + + +SL +I I+A H G TS L + + P ++ Sbjct: 120 TDGIDVDQAMADFWSLGLGDIYPIAASHGRGVTSLLEQALLPWVDEISPQEEVDEDAEYW 179 Query: 175 ----IENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLL 230 E N EE P+++ + P+++A+VGRPNVGKSTL NR+LG +R++ Sbjct: 180 AKFEAEQNGEAEEEPEDDFNPQ--------DLPIKLAIVGRPNVGKSTLTNRILGEDRVV 231 Query: 231 TGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTI 290 G TRDS+ I + DTAG+RK +IT+ +E+ +V K++Q++ + Sbjct: 232 VYDMPGTTRDSIYIPMQRDEREYVLIDTAGVRKRGKITDVVEKFSVIKTLQAIEDANVVL 291 Query: 291 VLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGD 350 +++DA QDL ++ + N+G ++V+ +NKWD +S ++ + ++ L I Sbjct: 292 LVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWDGLSQEVK--EQVKETLDYRLGFIDF 349 Query: 351 IYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRL 410 ++ IS G G+ +L SV E R++T+ L + + PP + R +L Sbjct: 350 ARVHFISALHGSGVGNLFESVREAYDSATRRVSTAMLTRIMNMAAEDHQPPLVRGRRVKL 409 Query: 411 KYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 KY +PP +I +P+SYKRYL+N R + + G PIR+ F+ +NP+ K Sbjct: 410 KYAHAGGYNPPIVVIHGNQVKDLPDSYKRYLMNYFRKSLDVMGTPIRIQFKEGENPFANK 469 >gi|24374819|ref|NP_718862.1| GTP-binding protein EngA [Shewanella oneidensis MR-1] gi|37999695|sp|Q8EC36|DER_SHEON RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|24349505|gb|AAN56306.1|AE015769_2 GTP-binding protein EngA [Shewanella oneidensis MR-1] Length = 487 Score = 285 bits (728), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 162/472 (34%), Positives = 261/472 (55%), Gaps = 11/472 (2%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A ++G F +VDT GI Sbjct: 1 MIPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAFLSGYEFIVVDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG I +M +Q+ AI EA ++LF+ D++AG+T D +I LR + +V+NK Sbjct: 61 -DGTEEGIETKMAEQSLAAIEEADVVLFMTDARAGLTAADLSIAQHLRSRQKTTFVVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D A E +SL E+ +++A G + + + + IE Sbjct: 120 IDGIDADSACAEFWSLGLGEVYQMAAAQGRGVTNMIEYALTPYAEAMG------IERQGE 173 Query: 181 NEESPKENITSE-GKSSVKNISK-PLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 EE + T E ++ K + P+++A++G+PNVGKSTL NR+LG R++ + G T Sbjct: 174 EEEVDERQYTEEEAEAEQKRLQDLPIKLAIIGKPNVGKSTLTNRILGEERVVVYDEPGTT 233 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RDS+ I I DTAG+R+ S++ E +E+ +V K++++V ++++DA Sbjct: 234 RDSIYIPMERDGREYVIIDTAGVRRRSKVHEVIEKFSVIKTLKAVEDANVVLLIIDAREG 293 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 +QDL ++ N G A+V+A+NKWD + + ++++ + L I I+ IS Sbjct: 294 VAEQDLGLLGFALNAGRALVIAVNKWDGIDQGIK--DRVKSELDRRLGFIDFARIHFISA 351 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 G G+ L S+ E R++TS L +Q +Q + PP + R +LKY Sbjct: 352 LHGTGVGHLFESIEEAYDSATRRVSTSMLTRIMQMSQDDHQPPLVNGRRVKLKYAHAGGY 411 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I +K+P+SYKRY++N R + + G PI++ FQ NP+ K Sbjct: 412 NPPIVVIHGNQVSKLPDSYKRYMMNYFRRSLKVVGTPIQLRFQEGDNPFENK 463 >gi|261212137|ref|ZP_05926423.1| GTP-binding protein EngA [Vibrio sp. RC341] gi|260838745|gb|EEX65396.1| GTP-binding protein EngA [Vibrio sp. RC341] Length = 494 Score = 285 bits (728), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 167/473 (35%), Positives = 266/473 (56%), Gaps = 6/473 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YGQA + F ++DT GI Sbjct: 1 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGEHEFIVIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M Q+ AI+EA ++LF++D +AG+T D AI LR+ P I+V NK Sbjct: 61 -DGSEEGVETKMAQQSLAAIDEADVVLFMVDGRAGLTVADEAIAQHLRRIEKPAILVVNK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHP--LEMIENN 178 +D A E + L ++ +I+ H G L F ++ + LE + N Sbjct: 120 VDGIDADAASAEFWQLGMDQMYQIATAHGRGVGALIDRALNPFAEQMESEQAQLEDLTNE 179 Query: 179 KRNEESPKENITSEGKSSVKNISK-PLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGI 237 + EE E E ++ K + P+++A++GRPNVGKSTL NR+LG R++ G Sbjct: 180 EDPEEEQLEYSEEEAEAEYKRLQDLPIKLAIIGRPNVGKSTLTNRILGEERVVVYDMPGT 239 Query: 238 TRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATI 297 TRDS+ I + DTAG+R+ RI E++E+ +V K++Q++ ++++DA Sbjct: 240 TRDSIYIPMKRDEREYVLIDTAGVRRRKRINETVEKFSVVKTLQAIEDANVVLLVVDARE 299 Query: 298 PFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTIS 357 QDL ++ N+G ++V+A+NKWD +S +++ + ++ + + L + I+ IS Sbjct: 300 NISDQDLSLLGFALNSGRSIVIAVNKWDGLS--IDVKEHVKKELDRRLGFVDFARIHFIS 357 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 G G+ L SV E + TR+ TS L ++ + PP + R +LKY Sbjct: 358 ALHGTGVGHLFESVQEAYRSATTRVGTSVLTRIMKMATDDHQPPMVRGRRVKLKYAHAGG 417 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I N++P+SYKRYL+N R + + G PIR+ FQ+S+NP+ K Sbjct: 418 YNPPIIVIHGNQVNELPDSYKRYLMNYYRKSLEIMGTPIRIQFQNSENPFEGK 470 >gi|238753871|ref|ZP_04615231.1| GTP-binding protein engA [Yersinia ruckeri ATCC 29473] gi|238707859|gb|EEQ00217.1| GTP-binding protein engA [Yersinia ruckeri ATCC 29473] Length = 496 Score = 285 bits (728), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 167/483 (34%), Positives = 264/483 (54%), Gaps = 22/483 (4%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI IA+VG PNVGKSTLFNRL + A+V + PG+TRDR YG+A + G F ++DT GI Sbjct: 1 MIPVIALVGRPNVGKSTLFNRLTHTRDALVADFPGLTRDRKYGRAEVEGHEFIVIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M Q+ LAI EA ++LF++D++AG+ P D I LR + +V+NK Sbjct: 61 -DGTEDGVETRMAGQSLLAIEEADIVLFMVDARAGLMPADQGIAQHLRSRQKATFLVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL-HSVIFKIFKQKYPNHPLEMIENN- 178 D + + YSL E+ I+A H G ++L V+ + + P L E N Sbjct: 120 TDGMEPEAAAADFYSLGMGEVHPIAASHGRGVAQLIEEVMAPYMEPEAPEVELTEEEANA 179 Query: 179 ------KRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTG 232 + + P E E + S P+++A+VGRPNVGKSTL NR+LG R++ Sbjct: 180 AYWAAQEAEGQDPAEYEDPE-EDDFDPRSLPIKLAIVGRPNVGKSTLTNRILGEERVVVY 238 Query: 233 SQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVL 292 G TRDS+ I + DTAG+RK ++TE++E+ +V K++Q++ +++ Sbjct: 239 DMPGTTRDSIYIPMIRDEREYILIDTAGVRKRGKVTETVEKFSVIKTLQAIEDSNVVLLV 298 Query: 293 LDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIY 352 +DA QDL ++ + N+G ++V+A+NKWD + ++ RT+ +K++ ++ + Sbjct: 299 IDARDGISDQDLSLLGFILNSGRSLVIAVNKWD------GMTEEARTQ-VKDMLELRLGF 351 Query: 353 -----INTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRY 407 I+ IS G G+ +L S+LE R+ TS L +Q + + PP + R Sbjct: 352 VDFARIHFISALHGSGVGNLFESILEAYDCSTKRVGTSMLTRIMQMAEEDHQPPLVRGRR 411 Query: 408 NRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 +LKY +PP +I + +SYKRYL+N R + + G PIR+ F+ +NP+ Sbjct: 412 VKLKYAHAGGYNPPIVVIHGNQVTDLADSYKRYLMNYFRRSLKVMGTPIRIQFKEGENPF 471 Query: 468 IKK 470 K Sbjct: 472 AGK 474 >gi|325578764|ref|ZP_08148811.1| ribosome-associated GTPase EngA [Haemophilus parainfluenzae ATCC 33392] gi|325159588|gb|EGC71720.1| ribosome-associated GTPase EngA [Haemophilus parainfluenzae ATCC 33392] Length = 506 Score = 285 bits (728), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 168/484 (34%), Positives = 269/484 (55%), Gaps = 31/484 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG A I+G F ++DT GI DG Sbjct: 6 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHANISGYDFIVIDTGGI-DGT 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKK-NIPIIIVSNKMDT 123 + ++M +Q+ LAI EA ++LFL+D++AG+T D I ++LR++ N ++V+NK D Sbjct: 65 EEGVEEKMAEQSLLAIEEADVVLFLVDARAGLTAADIGIANYLRQRTNKTTVVVANKTDG 124 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 A + E Y L +I +I+A G ++L + +K + EN++ ++E Sbjct: 125 IDADSHCAEFYQLGLGKIEQIAASQGRGVTQLMEQVLAPLAEKLQENE---AENDRTSDE 181 Query: 184 SPKE------NITSEGKSSV----------KNISKPLRIAVVGRPNVGKSTLINRLLGYN 227 K+ + SE +S+ + K ++IA+VGRPNVGKSTL NR+LG + Sbjct: 182 EEKDEWDHEFDFDSEEDTSLIDDALDEELEEEQDKNIKIAIVGRPNVGKSTLTNRILGED 241 Query: 228 RLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCE 287 R++ G TRDS+ I + DTAG+RK ++ ++E+ +V K++Q+++ Sbjct: 242 RVVVYDMPGTTRDSIYIPMERDGQQYTLIDTAGVRKRGKVHLAVEKFSVIKTLQAIQDAN 301 Query: 288 TTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQ 347 ++ +DA QDL ++ + NTG ++V+ +NKWD L QD++ + L + Sbjct: 302 VVLLTIDARENISDQDLSLLGFILNTGRSLVIVVNKWD------GLDQDVKDRVKSELDR 355 Query: 348 IGDI----YINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTI 403 D ++ IS G G+ +L S+ E ++TTS L LQ ++ PP I Sbjct: 356 RLDFIDFARVHFISALHGSGVGNLFDSIKEAYACATQKMTTSLLTRILQMATDEHQPPMI 415 Query: 404 FNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSS 463 R +LKY +PP ++ +K+P+SYKRYL N R + + G PIR+ FQ Sbjct: 416 GGRRIKLKYAHPGGYNPPIIVVHGNQMDKLPDSYKRYLSNYYRKSLKIIGSPIRLLFQEG 475 Query: 464 KNPY 467 NP+ Sbjct: 476 SNPF 479 >gi|113969576|ref|YP_733369.1| GTP-binding protein EngA [Shewanella sp. MR-4] gi|117919682|ref|YP_868874.1| GTP-binding protein EngA [Shewanella sp. ANA-3] gi|123029832|sp|Q0HKV5|DER_SHESM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|166225858|sp|A0KUJ9|DER_SHESA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|113884260|gb|ABI38312.1| small GTP-binding protein [Shewanella sp. MR-4] gi|117612014|gb|ABK47468.1| small GTP-binding protein [Shewanella sp. ANA-3] Length = 488 Score = 285 bits (728), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 162/472 (34%), Positives = 261/472 (55%), Gaps = 11/472 (2%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A ++G F +VDT GI Sbjct: 1 MIPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAFLSGYEFIVVDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG I +M +Q+ AI EA ++LF+ D++AG+T D +I LR + +V+NK Sbjct: 61 -DGTEEGIETKMAEQSLAAIEEADVVLFMTDARAGLTAADLSIAQHLRSRQKTTFVVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D A E +SL E+ +++A G + + + + IE Sbjct: 120 IDGIDADSACAEFWSLGLGEVYQMAAAQGRGVTNMIEYALTPYAEAMG------IERQGE 173 Query: 181 NEESPKENITSE-GKSSVKNISK-PLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 EE + T E ++ K + P+++A++G+PNVGKSTL NR+LG R++ + G T Sbjct: 174 EEEVDERQYTEEEAEAEQKRLQDLPIKLAIIGKPNVGKSTLTNRILGEERVVVYDEPGTT 233 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RDS+ I I DTAG+R+ S++ E +E+ +V K++++V ++++DA Sbjct: 234 RDSIYIPMERDGREYVIIDTAGVRRRSKVHEVIEKFSVIKTLKAVEDANVVLLIIDAREG 293 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 +QDL ++ N G A+V+A+NKWD + + ++++ + L I I+ IS Sbjct: 294 IAEQDLGLLGFALNAGRALVIAVNKWDGIDQGIK--DRVKSELDRRLGFIDFARIHFISA 351 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 G G+ L S+ E R++TS L +Q +Q + PP + R +LKY Sbjct: 352 LHGTGVGHLFESIEEAYDSATRRVSTSMLTRIMQMSQDDHQPPLVNGRRVKLKYAHAGGY 411 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I +K+P+SYKRY++N R + + G PI++ FQ NP+ K Sbjct: 412 NPPIVVIHGNQVSKLPDSYKRYMMNYFRRSLKVVGTPIQLRFQEGDNPFENK 463 >gi|212710611|ref|ZP_03318739.1| hypothetical protein PROVALCAL_01677 [Providencia alcalifaciens DSM 30120] gi|212686692|gb|EEB46220.1| hypothetical protein PROVALCAL_01677 [Providencia alcalifaciens DSM 30120] Length = 492 Score = 284 bits (726), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 164/476 (34%), Positives = 263/476 (55%), Gaps = 12/476 (2%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A + G F I+DT GI Sbjct: 1 MIPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGHEFIIIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + M Q+ AI EA ++LF++D++AG+ P D I LR + +V+NK Sbjct: 61 -DGTEEGVETHMAAQSLQAIEEADVVLFMVDARAGLMPADEGIAKHLRSRKKKTYLVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 D A + YSL EI I+A H G ++L K F + + +E+ + Sbjct: 120 TDGIDANIVVGDFYSLGLGEIYPIAASHGRGVTQLIEHSLKPFIE-VEDEEIELTDEEAN 178 Query: 181 N----EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSG 236 E + ++ E + + P+++A+VGRPNVGKSTL NR+LG +R++ G Sbjct: 179 AAYWAELEAEGELSEEDEDDFDPSTLPIKLAIVGRPNVGKSTLTNRILGEDRVVVFDMPG 238 Query: 237 ITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDAT 296 TRDS+ I + DTAG+RK ++TE++E+ +V K++Q++ ++++DA Sbjct: 239 TTRDSIYIPMERDEREYILIDTAGVRKRGKVTETVEKFSVIKTLQAIEDANVVLLVIDAR 298 Query: 297 IPFEKQDLRIVDSVFNTGHAVVLALNKWDMV--SDKLNLLQDLRTKAIKNLPQIGDIYIN 354 QDL ++ + N G ++V+A+NKWD + D+ ++ L + L + I+ Sbjct: 299 EGISDQDLSLLGFILNAGRSLVIAVNKWDGMKPEDREHVKDMLELR----LGFVDFARIH 354 Query: 355 TISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYIT 414 IS G G+ +L SV E + R+ T+ L ++ + ++ PP I R ++KY Sbjct: 355 FISALHGSGVGNLFESVQEAYESATRRVGTALLTRIMKMAEDEHQPPLIRGRRVKMKYAH 414 Query: 415 QIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I + +P+SYKRYL+N R + ++ G PIR+ F+ +NPY K Sbjct: 415 AGGHNPPIVVIHGNQVSDLPDSYKRYLMNYFRRSLNVMGTPIRILFKEGENPYADK 470 >gi|68171706|ref|ZP_00545063.1| Small GTP-binding protein domain:GTP-binding [Ehrlichia chaffeensis str. Sapulpa] gi|88657837|ref|YP_507319.1| GTP-binding protein EngA [Ehrlichia chaffeensis str. Arkansas] gi|67998875|gb|EAM85570.1| Small GTP-binding protein domain:GTP-binding [Ehrlichia chaffeensis str. Sapulpa] gi|88599294|gb|ABD44763.1| GTP-binding protein EngA [Ehrlichia chaffeensis str. Arkansas] Length = 442 Score = 284 bits (726), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 166/469 (35%), Positives = 267/469 (56%), Gaps = 43/469 (9%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKST+FNRL +K A+V N P +TRDR G A + G+ F IVDT G+ + Sbjct: 4 IAIVGLPNVGKSTIFNRLTSQKSAIVSNIPNLTRDRREGDADLCGLKFKIVDTGGVDN-- 61 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKK-NIPIIIVSNKMDT 123 ++ + DQ +L+I E+ +I F++D++ + +LRKK PII+++NK ++ Sbjct: 62 TIKLSSLVLDQVKLSIEESDIIFFVVDARIEHDDKNIEFAKYLRKKVKKPIILIANKCES 121 Query: 124 RIAQRNFYEIYSL---DFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 Q+ Y I L DF V ISAEH+LG +L+ + K+ Y + L++ Sbjct: 122 ---QKRCYSIDYLGYFDFIGPVYISAEHNLGLVDLYEALLPFIKE-YDLNTLDL------ 171 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 NI ++++VGRPN GKST INRLL NR++ + G TRD Sbjct: 172 ------HNI---------------KLSIVGRPNAGKSTFINRLLAENRMIVSPEPGTTRD 210 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ + + ++ + DTAGMRK +++TES+E +V K+++S+ + I+++D+ E Sbjct: 211 SIDVEYTYRGQKFTLIDTAGMRKKAKVTESIEVTSVHKTIESINRSDIVILMIDSVYGIE 270 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVS--DKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 +QDL I + G A+++ALNKWDM++ D+ LL+D+ N + + +S Sbjct: 271 QQDLSIAELAIQKGKAIIIALNKWDMIAKKDRSELLKDICNYNKLNFK----VPVIEVSA 326 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 + ++ + +E+ K RI+TS LN WL+ + PP + ++KYITQ++ Sbjct: 327 LKNINCNKIIETSIELYKCLTMRISTSVLNKWLKLAVEYHKPPLCNGKVVKIKYITQVKV 386 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 PP+F+ I +Y++YL++ LR +FS+ GIPIR+ F+ +KNPY Sbjct: 387 IPPTFIAVVNGSYSIDLTYRQYLMSSLRKHFSIDGIPIRLNFKKNKNPY 435 Score = 43.1 bits (100), Expect = 0.098, Method: Compositional matrix adjust. Identities = 30/102 (29%), Positives = 51/102 (50%), Gaps = 4/102 (3%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 L+IA+VG PNVGKST+ NRL + + +TRD + +I DT G+ Sbjct: 2 LKIAIVGLPNVGKSTIFNRLTSQKSAIVSNIPNLTRDRREGDADLCGLKFKIVDTGGVDN 61 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLR 305 +++ SL VK S++ + ++DA I + +++ Sbjct: 62 TIKLS-SLVLDQVKLSIEE---SDIIFFVVDARIEHDDKNIE 99 >gi|307132056|ref|YP_003884072.1| 50S ribosome associated factor involved in the biogenesis and stability of 50S ribosomal subunits [Dickeya dadantii 3937] gi|306529585|gb|ADM99515.1| 50S ribosome associated factor involved in the biogenesis and stability of 50S ribosomal subunits [Dickeya dadantii 3937] Length = 495 Score = 284 bits (726), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 168/480 (35%), Positives = 261/480 (54%), Gaps = 18/480 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A + G F I+DT GI Sbjct: 1 MIPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGNEFIIIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ LAI EA ++LFL+D++ G+ P DHAI LR + +V+NK Sbjct: 61 -DGNEDGVETRMAEQSLLAIEEADIVLFLVDARDGLMPADHAIAQHLRMREKDTFLVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D + YSL E+ I+A H G + L + F P + + Sbjct: 120 VDGIDIDTGIADFYSLGLGEVHPIAASHGRGVTSLLEKVLLPFVVD-PVEETRELTEEEA 178 Query: 181 NEESPKENITS-----EGKSSVKNISK-PLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQ 234 N E ++ +G+ + N+ P+++A+VGRPNVGKSTL NR+LG R++ Sbjct: 179 NAAYWAEQLSEGDDGIDGEDNAPNLEGLPIKLAIVGRPNVGKSTLTNRILGEERVVVFDM 238 Query: 235 SGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLD 294 G TRDS+ I + DTAG+RK +IT+++E+ +V K++Q++ ++++D Sbjct: 239 PGTTRDSIYIPMERDGRDYVLIDTAGVRKRGKITDAVEKFSVIKTLQAIEDANVVLLVID 298 Query: 295 ATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVS----DKLNLLQDLRTKAIKNLPQIGD 350 A QDL ++ + N+G ++V+ +NKWD ++ D++ DLR L I Sbjct: 299 AREGISDQDLSLLGFILNSGRSLVIVVNKWDGLTQEIKDQVKETLDLR------LGFIDF 352 Query: 351 IYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRL 410 I+ IS G G+ +L SV E R+ T+ L +Q + PP + R +L Sbjct: 353 ARIHFISALHGSGVGNLFESVTEAYDCSTRRVGTAMLTRIMQMAADDHQPPLVRGRRVKL 412 Query: 411 KYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 KY +PP +I +P+SYKRYL+N R + + G PIR+ F+ +NP+ K Sbjct: 413 KYAHAGGYNPPIVVIHGNQVKDLPDSYKRYLMNYYRRSLDVMGTPIRIQFKEGENPFADK 472 >gi|261820577|ref|YP_003258683.1| GTP-binding protein EngA [Pectobacterium wasabiae WPP163] gi|261604590|gb|ACX87076.1| ribosome-associated GTPase EngA [Pectobacterium wasabiae WPP163] Length = 495 Score = 284 bits (726), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 168/479 (35%), Positives = 262/479 (54%), Gaps = 16/479 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A + G F IVDT GI Sbjct: 1 MIPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGHEFIIVDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M Q+ +AI EA ++LF++D++AG+ P D I LR + ++V+NK Sbjct: 61 -DGTEDGVETRMAGQSLVAIEEADIVLFMVDARAGLMPADEGIAKHLRSREKMTVLVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 D + YSL E+ I+A H G + L + F Q P+E+ E + Sbjct: 120 TDGLDPDMVTADFYSLGMGEVYAIAASHGRGVTSLLETVLLPFVQDEIEEPVELTEEEEN 179 Query: 181 NE-----ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQS 235 E+ ++ E + P+++A+VGRPNVGKSTL NR+LG R++ Sbjct: 180 AAYWAALEAKEQASEEEAEDDFNPEDLPIKLAIVGRPNVGKSTLTNRILGEERVVVYDMP 239 Query: 236 GITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDA 295 G TRDS+ I + DTAG+RK ++TE++E+ +V K++Q++ ++++DA Sbjct: 240 GTTRDSIYIPMVRDEREYILIDTAGVRKRGKVTETVEKFSVIKTLQAIEDANVVLLVIDA 299 Query: 296 TIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVS----DKLNLLQDLRTKAIKNLPQIGDI 351 QDL ++ + N+G ++V+ +NKWD +S D++ + DLR L I Sbjct: 300 REGISDQDLSLLGFILNSGRSLVIVVNKWDGLSQEVRDQVKDMLDLR------LGFIDFA 353 Query: 352 YINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLK 411 I+ IS G G+ +L SV+E R++T+ L +Q + PP + R +LK Sbjct: 354 RIHFISALHGSGVGNLFESVMEAYSCATRRVSTAMLTRVMQMAADDHQPPLVRGRRVKLK 413 Query: 412 YITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 Y +PP +I +P+SYKRYL+N R + + G PIR+ F+ +NP+ K Sbjct: 414 YAHAGGYNPPIVVIHGNQVKDLPDSYKRYLMNYYRRSLEVMGTPIRIQFKEGENPFADK 472 >gi|260598897|ref|YP_003211468.1| GTP-binding protein Der [Cronobacter turicensis z3032] gi|260218074|emb|CBA32819.1| GTP-binding protein engA [Cronobacter turicensis z3032] Length = 492 Score = 284 bits (726), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 163/472 (34%), Positives = 259/472 (54%), Gaps = 5/472 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A + G F +DT GI Sbjct: 1 MIPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ LAI EA ++LF++D++AG+ P D AI LR + P +V+NK Sbjct: 61 -DGAEEGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSRQKPTFLVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL--HSVIFKIFKQKYPNHPLEMIENN 178 D + + YSL EI I+A H G + L H ++ + P E E Sbjct: 120 TDGLDPDQAVADFYSLGLGEIHPIAASHGRGVTSLLEHVLVPWMDDVDPPEEVDEEAEYW 179 Query: 179 KRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 + E + E + P+++A+VGRPNVGKSTL NR+LG +R++ G T Sbjct: 180 AQFEAEQNGEVVEEEEDDFNPQDLPIKLAIVGRPNVGKSTLTNRILGEDRVVVFDMPGTT 239 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RDS+ I + DTAG+RK +IT+ +E+ +V K++Q++ ++++DA Sbjct: 240 RDSIYIPMERDGREFVLIDTAGVRKRGKITDVVEKFSVIKTLQAIEDANVVLLVIDAREG 299 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 QDL ++ + N+G ++V+ +NKWD +S ++ +++ L I ++ IS Sbjct: 300 ISDQDLSLLGFILNSGRSLVIVVNKWDGLSQEVK--DEVKETLDYRLGFIDFARVHFISA 357 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 G G+ +L SV E R++T+ L ++ + + PP + R +LKY Sbjct: 358 LHGSGVGNLFESVREAYDSSTRRVSTALLTRIMKMAEEDHQPPMVRGRRVKLKYAHAGGY 417 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I + +P+SYKRYL+N R + + G PIR+ F+ NP+ K Sbjct: 418 NPPIVVIHGSQVKDLPDSYKRYLMNYFRKSLDVMGTPIRIQFKEGANPFANK 469 >gi|108759687|ref|YP_631948.1| GTP-binding protein EngA [Myxococcus xanthus DK 1622] gi|122981004|sp|Q1D5X5|DER_MYXXD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|108463567|gb|ABF88752.1| GTP-binding protein EngA [Myxococcus xanthus DK 1622] Length = 459 Score = 284 bits (726), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 153/460 (33%), Positives = 246/460 (53%), Gaps = 26/460 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNRLV +++A+V + PG+TRDR Y A G F +DT G G Sbjct: 5 VAIVGRPNVGKSTLFNRLVGRRIALVQDEPGVTRDRHYADAEWEGRQFTFIDTGGFVPGD 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +Q+ +Q +LA++E +I+F+ D++AG+T D A+ ++LRK P+++ +NK+D Sbjct: 65 EDQLLQQVREQAQLAVDECDVIVFVTDARAGLTAADEAVANYLRKSGKPVVLAANKLDNT 124 Query: 125 IAQRNFY--EIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 Q E Y L ++ +SAEH LG EL + K E + E Sbjct: 125 SGQMQALAGEFYRLGLGDVQALSAEHGLGMQELFDSVVARLPPK---------EEGEDAE 175 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 P + I +R+A++GRPNVGKSTL+N +L R++ +G TRD V Sbjct: 176 APPDDGI--------------IRLAIIGRPNVGKSTLVNAILKEKRVVASDVAGTTRDPV 221 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 +K+ + + DTAG+R+ I + +EQ +V +++ + + ++L+DAT P Q Sbjct: 222 DSELTYKDRKLLLTDTAGIRRKKSIAQRVEQFSVVAALKVMERSDVAVLLMDATEPAVDQ 281 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D ++ G A+V+ +NKWD+V + R +L +G I S TG Sbjct: 282 DAKLAGLAEERGRALVIVVNKWDLVGADQRRQETYRESLKHSLKFVGYAPILFTSALTGS 341 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 ++ ++ E+ ++ R T LN L +P P + + R+ YI Q+ ++PP+ Sbjct: 342 KVEKVVDVATELADQFRFRAPTPQLNRLLDHMVDNHPAPIVRGKPLRMYYIAQVAAAPPT 401 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 F I P+ +P+ YKRY+ N+LR F L +PIR+ F+ Sbjct: 402 FTITVNHPDGVPDMYKRYITNQLRKTFDLR-VPIRLIFKG 440 Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 41/142 (28%), Positives = 68/142 (47%), Gaps = 6/142 (4%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 I +AI+G PNVGKSTL N ++K+K V + G TRD + + + DTAGI Sbjct: 182 IIRLAIIGRPNVGKSTLVNAILKEKRVVASDVAGTTRDPVDSELTYKDRKLLLTDTAGIR 241 Query: 62 DGKNCSIAKQMNDQTELA----INEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIV 117 + SIA+++ + +A + + + + L+D+ D + ++ ++IV Sbjct: 242 --RKKSIAQRVEQFSVVAALKVMERSDVAVLLMDATEPAVDQDAKLAGLAEERGRALVIV 299 Query: 118 SNKMDTRIAQRNFYEIYSLDFK 139 NK D A + E Y K Sbjct: 300 VNKWDLVGADQRRQETYRESLK 321 >gi|90579361|ref|ZP_01235171.1| GTP-binding protein EngA [Vibrio angustum S14] gi|90440194|gb|EAS65375.1| GTP-binding protein EngA [Vibrio angustum S14] Length = 500 Score = 284 bits (726), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 165/482 (34%), Positives = 268/482 (55%), Gaps = 18/482 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A + F ++DT GI Sbjct: 1 MIPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAELEEHEFIVIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ AI EA ++LFL+D +AG+T D AI LR + P +V NK Sbjct: 61 -DGTEEGVETKMAEQSLAAIEEADVVLFLVDGRAGLTAADEAIAKHLRSREKPTFLVVNK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D A E + L + +I+A + G + L F K E+ EN + Sbjct: 120 VDGIDADSACAEFWRLGVDAMYQIAATQNRGVTALMERALAPFSDKLN---AELAENGEE 176 Query: 181 NEES----------PKENIT-SEGKSSVKNI-SKPLRIAVVGRPNVGKSTLINRLLGYNR 228 E S K N++ ++ +++ K + +P+++A++GRPNVGKSTL NR+LG R Sbjct: 177 QEVSIEDLTSVEDIEKANLSEADAEAAYKRLQEQPIKLAIIGRPNVGKSTLTNRILGEER 236 Query: 229 LLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCET 288 ++ G TRDS+ I + DTAG+R+ + +++E+ +V +++++V Sbjct: 237 VVVYDMPGTTRDSIYIPMERDGQEYVLIDTAGIRRRKNMHQAVEKFSVIQTLKAVEDANV 296 Query: 289 TIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQI 348 ++++DA QDL ++ N G ++V+A+NKWD + +++ + ++++ + L + Sbjct: 297 VLLVIDARENISDQDLSLLGFALNAGRSLVIAVNKWDGLDNEVK--ERVKSELDRRLGFV 354 Query: 349 GDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYN 408 I+ IS G G+ L SV+E + RI+TS L +Q Q + PP I R Sbjct: 355 DFARIHFISALHGTGVGHLYESVIEAYQSATKRISTSLLTRIMQMAQDDHQPPMIRGRRV 414 Query: 409 RLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYI 468 +LKY +PP ++ N +P SYKRYL+N R + + G PIR+ FQ+S+NP+ Sbjct: 415 KLKYAHAGGYNPPIIVVHGNQVNDLPGSYKRYLMNYYRKSLEMMGTPIRIQFQNSENPFE 474 Query: 469 KK 470 K Sbjct: 475 TK 476 >gi|145299527|ref|YP_001142368.1| GTP-binding protein EngA [Aeromonas salmonicida subsp. salmonicida A449] gi|166224302|sp|A4SNZ8|DER_AERS4 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|142852299|gb|ABO90620.1| GTP-binding protein EngA [Aeromonas salmonicida subsp. salmonicida A449] Length = 499 Score = 283 bits (725), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 164/484 (33%), Positives = 262/484 (54%), Gaps = 27/484 (5%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YGQA + + F +VDT GI Sbjct: 1 MTPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGELEFIVVDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG I +M +Q+ LAI EA ++LF++D++AG+T D AI + LRK + + +V+NK Sbjct: 61 -DGTEEGIELKMAEQSLLAIEEADVVLFMVDARAGLTAADQAIAAHLRKTHKKVFLVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 D E Y L ++ +I+A H G + + + H +++ Sbjct: 120 TDGIDGDSAVSEFYCLALGDVYQIAAAHGRG-------VLSLLELALAPHLETLVDAAAE 172 Query: 181 NEESPKE----------NITSEGKSSVKNISK-------PLRIAVVGRPNVGKSTLINRL 223 + +E + + G + +K P++ A+VGRPNVGKSTL NR+ Sbjct: 173 EDAQDEEEEDFDEEALLRMVAAGDLDTREDTKETPFADLPIKFAIVGRPNVGKSTLTNRM 232 Query: 224 LGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSV 283 LG +R++ G TRDSV + + DTAG+R+ ++ E++E+ +V K+++++ Sbjct: 233 LGEDRVIVYDMPGTTRDSVYVPMERDEQKYVVIDTAGVRRRGKVHETVEKFSVIKTLKAI 292 Query: 284 RTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIK 343 ++++DA QDL I+ V ++G +VVL +NKWD + K+ +D++ + + Sbjct: 293 EDANVCLLVIDAQETITDQDLSILGFVLHSGRSVVLVVNKWDGLDQKVK--EDVKNELDR 350 Query: 344 NLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTI 403 L I ++ IS G G+ L S+ E + R +T+ L +Q Q + PP + Sbjct: 351 RLGFIDFARVHFISALHGSGVGHLFESIQEAYQSATRRTSTAMLTRIMQMAQEDHQPPMV 410 Query: 404 FNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSS 463 R +LKY +PP +I N +P+SYKRYLIN R + + G PIR+ FQ S Sbjct: 411 NGRRVKLKYAHAGGYNPPRIVIHGNQLNDLPDSYKRYLINYFRKSLKIMGSPIRVEFQES 470 Query: 464 KNPY 467 NP+ Sbjct: 471 ANPF 474 >gi|322514868|ref|ZP_08067886.1| ribosome-associated GTPase EngA [Actinobacillus ureae ATCC 25976] gi|322119172|gb|EFX91317.1| ribosome-associated GTPase EngA [Actinobacillus ureae ATCC 25976] Length = 505 Score = 283 bits (725), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 168/485 (34%), Positives = 269/485 (55%), Gaps = 19/485 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG A I G F +VDT GI Sbjct: 1 MTPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHANIAGYDFIVVDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + ++M +Q+ LAI EA ++LFL+D++AG+ P D I +LR++ ++V+NK Sbjct: 61 -DGTEEGVEEKMAEQSLLAIEEADVVLFLVDARAGLLPADIGIAQYLRQREKTTVVVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL-HSVIFKIFKQKYPNHPLEMIENNK 179 D A + E Y L E+ +I+A G ++L V+ + +Q + +E E + Sbjct: 120 TDGIDADSHCAEFYQLGLGEVEQIAAAQGRGVTQLIEQVLATLGEQLNADQAVEN-EEDS 178 Query: 180 RNEESPK---------ENITSEGKSSVKNIS-----KPLRIAVVGRPNVGKSTLINRLLG 225 NEE+ + E T+ ++++ S K ++IA+VGRPNVGKSTL NR+LG Sbjct: 179 ANEEADEWDTDFDFDNEEDTALLDEALEDESESIEDKNIKIAIVGRPNVGKSTLTNRILG 238 Query: 226 YNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRT 285 +R++ G TRDS+ I I DTAG+RK ++ ++E+ +V K++Q+++ Sbjct: 239 EDRVVVYDMPGTTRDSIYIPMERDGQQYTIIDTAGVRKRGKVNLAVEKFSVIKTLQAIQD 298 Query: 286 CETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNL 345 ++ +DA QDL ++ + N G ++V+ +NKWD +S ++ ++++ + L Sbjct: 299 ANVVLLTIDAREGISDQDLSLLGFILNAGRSLVIVVNKWDGLSQ--DIKDQVKSELDRRL 356 Query: 346 PQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFN 405 I ++ IS G G+ +L SV E + +TS L L+ ++ PP + Sbjct: 357 DFIDFARVHFISALHGSGVGNLFDSVKEAYACATQKTSTSMLTRILRMAADEHQPPLVNG 416 Query: 406 RYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 R +LKY +PP +I K+ +SYKRYL N R + + G PIR+ FQ N Sbjct: 417 RRVKLKYAHSGGYNPPIIVIHGNQVEKLADSYKRYLSNYFRKSLKIIGSPIRIQFQEGNN 476 Query: 466 PYIKK 470 P+ K Sbjct: 477 PFAGK 481 >gi|313892548|ref|ZP_07826135.1| ribosome biogenesis GTPase Der [Dialister microaerophilus UPII 345-E] gi|313118945|gb|EFR42150.1| ribosome biogenesis GTPase Der [Dialister microaerophilus UPII 345-E] Length = 443 Score = 283 bits (725), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 166/465 (35%), Positives = 251/465 (53%), Gaps = 36/465 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST+ N L +K++++V + PG+TRDR+Y A F ++DT GI + Sbjct: 6 VAIVGRPNVGKSTIINGLAQKRVSIVEDLPGVTRDRIYCDAQWLDREFTLIDTGGIEFRE 65 Query: 65 NCS-IAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 I+ + Q +LAI EA +ILF+ D + G+ D I LRK P+++ NK+DT Sbjct: 66 EADQISDGIRMQAQLAIEEADVILFVTDVRVGLLDDDVTIAEMLRKTGKPVVVAVNKVDT 125 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + YE Y+L + + ISA + +G +L I + F + P ++I Sbjct: 126 EAQEMDVYEFYALGLGDPIGISASNRVGFGDLLDKISEGFPKYEPRESEDII-------- 177 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 R A+VGRPNVGKSTL+N LLGY R L + G TRD++ Sbjct: 178 ---------------------RTAIVGRPNVGKSTLVNSLLGYERSLVADEMGTTRDAID 216 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 W K + DTAGMRK ++I E LE+ +V +S++++ C+ + +LDA +QD Sbjct: 217 SLWTHKGKKFVLVDTAGMRKKNKIDEPLEKYSVIRSIRAIDDCDVAVFVLDAKDMLTEQD 276 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE- 362 +I+ + G ++L +NKWD+V + D K LP + I SG T + Sbjct: 277 KKIIGYIHEAGKGLILMVNKWDIVEKDTHTSVDFEKKIRDGLPFAPYVRILFGSGLTKQR 336 Query: 363 --GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 L DL+ SV E + RI+TS LN L+ ++ NPPP + ++ Y+TQ+ P Sbjct: 337 IHKLGDLIYSVAEQQSM---RISTSVLNDLLEDAKIINPPPAHAGKLAKIYYMTQVGIRP 393 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 P+F++F N I SY RY+ NRLR +FS SG PIR+ +S ++ Sbjct: 394 PTFVMFVNDVNLIHFSYVRYIENRLRESFSFSGTPIRIVVRSKRD 438 >gi|261345330|ref|ZP_05972974.1| ribosome-associated GTPase EngA [Providencia rustigianii DSM 4541] gi|282566664|gb|EFB72199.1| ribosome-associated GTPase EngA [Providencia rustigianii DSM 4541] Length = 491 Score = 283 bits (724), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 167/476 (35%), Positives = 262/476 (55%), Gaps = 13/476 (2%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A + G F I+DT GI Sbjct: 1 MIPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGHEFIIIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + M Q+ AI EA ++LF++D++AG+ P D I LR + +V+NK Sbjct: 61 -DGTEEGVETHMAAQSLQAIEEADVVLFMVDARAGLMPADEGIAKHLRSRKKKTYLVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL--HSVIFKIFKQKYPNHPLEMIENN 178 D A + YSL EI I+A H G ++L HS+ I ++ + N Sbjct: 120 TDGIDANIVVGDFYSLGLGEIYPIAASHGRGVTQLIEHSLKPFIEVEEEEVELTDEEANA 179 Query: 179 KRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 E E+ S+ + + P+++A+VGRPNVGKSTL NR+LG +R++ G T Sbjct: 180 AYWAELEAESELSDEEDDFDPSTLPIKLAIVGRPNVGKSTLTNRILGEDRVVVFDMPGTT 239 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RDS+ I + DTAG+RK ++TE++E+ +V K++Q++ ++++DA Sbjct: 240 RDSIYIPMERDEREYILIDTAGVRKRGKVTETVEKFSVIKTLQAIEDANVVLLVIDAREG 299 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVS----DKLNLLQDLRTKAIKNLPQIGDIYIN 354 QDL ++ + N G ++V+A+NKWD + D + + +LR L + I+ Sbjct: 300 ISDQDLSLLGFILNAGRSLVIAVNKWDGMKPEDRDHVKDMLELR------LGFVDFARIH 353 Query: 355 TISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYIT 414 IS G G+ +L SV E + R+ T+ L ++ + ++ PP I R ++KY Sbjct: 354 FISALHGSGVGNLFESVQEAYESATRRVGTALLTRIMKMAEDEHQPPLIRGRRVKMKYAH 413 Query: 415 QIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I + +P+SYKRYL+N R + + G PIR+ F+ +NPY K Sbjct: 414 AGGHNPPIVVIHGNQVSDLPDSYKRYLMNYFRRSLKVMGTPIRIQFKEGENPYADK 469 >gi|170718421|ref|YP_001783641.1| GTP-binding protein EngA [Haemophilus somnus 2336] gi|168826550|gb|ACA31921.1| small GTP-binding protein [Haemophilus somnus 2336] Length = 511 Score = 283 bits (724), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 165/481 (34%), Positives = 264/481 (54%), Gaps = 21/481 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YGQA NG F ++DT GI DG Sbjct: 6 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAHFNGYDFIVIDTGGI-DGT 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKK-NIPIIIVSNKMDT 123 + ++M +Q+ LAI EA ++LFL+D++AG+T D I +LRK+ N ++V+NK D Sbjct: 65 EEGVEEKMAEQSLLAIEEADIVLFLVDARAGLTSADVGIAQYLRKRQNKTTVLVANKTDG 124 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF-----KIFKQKYPNHPLEMIENN 178 A + E Y L EI +I+A G S L + K+ H +EN+ Sbjct: 125 IDADSHCAEFYQLGLGEIEKIAASQGRGISALMEKVLPPVADKLSLANAEEHSESAVENS 184 Query: 179 KRNEESPKENITSEGKSSVKNISKPL------------RIAVVGRPNVGKSTLINRLLGY 226 + E +++ + ++ + + L +IA+VGRPNVGKSTL NR+LG Sbjct: 185 DESAEEWEKDFNFNSEEDIQLLDEALVEEQEESEDKNIKIAIVGRPNVGKSTLTNRILGE 244 Query: 227 NRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTC 286 +R++ G TRDS+ I + DTAG+RK ++ ++E+ +V K++Q+++ Sbjct: 245 DRVVVYDLPGTTRDSIYIPMERDGQQYTLIDTAGVRKRGKVHLTVEKFSVIKTLQAIQDA 304 Query: 287 ETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLP 346 ++ +DA QDL ++ + NTG ++V+ +NKWD ++ ++ ++++ + L Sbjct: 305 NVILLTIDARQGISDQDLSLLGFILNTGRSLVIVVNKWDGLNQ--DIKDQVKSELDRRLD 362 Query: 347 QIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNR 406 I ++ IS G G+ +L S+ E ++TTS L LQ ++ PP I R Sbjct: 363 FIDFARVHFISALHGSGVGNLFDSIKEAYACATKKMTTSLLTRILQMATDEHQPPMIGGR 422 Query: 407 YNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNP 466 +LKY +PP ++ +P+SYKRYL N R + + G PIR+ FQ NP Sbjct: 423 RIKLKYAHPGGYNPPIIVVHGNQIEGLPDSYKRYLSNYYRRSLKIIGSPIRLLFQEGNNP 482 Query: 467 Y 467 + Sbjct: 483 F 483 >gi|251788752|ref|YP_003003473.1| GTP-binding protein EngA [Dickeya zeae Ech1591] gi|247537373|gb|ACT05994.1| small GTP-binding protein [Dickeya zeae Ech1591] Length = 497 Score = 283 bits (724), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 164/478 (34%), Positives = 256/478 (53%), Gaps = 12/478 (2%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A + G F I+DT GI Sbjct: 1 MIPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGNEFIIIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ LAI EA ++LFL+D++ G+ P DHAI LR + +V+NK Sbjct: 61 -DGTEDGVETRMAEQSLLAIEEADIVLFLVDARDGLMPADHAIAQHLRTREKDTFLVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D + YSL E+ I+A H G + L + F + E+ E Sbjct: 120 IDGIDIDTGTADFYSLGLGEVYPIAASHGRGVTALLEKVLLPFAVEPAQEARELTEEEA- 178 Query: 181 NEESPKENITSEGKSSVKNISK--------PLRIAVVGRPNVGKSTLINRLLGYNRLLTG 232 N E + + + P+++A+VGRPNVGKSTL NR+LG R++ Sbjct: 179 NAAYWAEQLGEGNDDDIDGVDGDAPNLEGLPIKLAIVGRPNVGKSTLTNRILGEERVVVF 238 Query: 233 SQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVL 292 G TRDS+ I + DTAG+RK +IT+++E+ +V K++Q++ +++ Sbjct: 239 DMPGTTRDSIYIPMERDGRDYVLIDTAGVRKRGKITDAVEKFSVIKTLQAIEDANVVLLV 298 Query: 293 LDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIY 352 +DA QDL ++ + N+G ++V+ +NKWD +S ++ + ++ L I Sbjct: 299 IDAREGISDQDLSLLGFILNSGRSLVIVVNKWDGLSQEVK--EQVKETLDLRLGFIDFAR 356 Query: 353 INTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKY 412 I+ IS G G+ +L SV E R+ T+ L +Q + PP + R +LKY Sbjct: 357 IHFISALHGSGVGNLFESVTEAYDCSTRRVGTAMLTRIMQMAADDHQPPLVRGRRVKLKY 416 Query: 413 ITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I +P+SYKRYL+N R + + G PIR+ F+ +NP+ K Sbjct: 417 AHAGGYNPPIVVIHGNQVKDLPDSYKRYLMNYYRRSLDVMGTPIRIQFKEGENPFADK 474 >gi|260913735|ref|ZP_05920211.1| ribosome-associated GTPase EngA [Pasteurella dagmatis ATCC 43325] gi|260632274|gb|EEX50449.1| ribosome-associated GTPase EngA [Pasteurella dagmatis ATCC 43325] Length = 511 Score = 283 bits (724), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 169/486 (34%), Positives = 267/486 (54%), Gaps = 24/486 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YGQA I G F ++DT GI DG Sbjct: 6 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQANIAGYDFIVIDTGGI-DGT 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPI-IIVSNKMDT 123 + ++M +Q+ LAI EA ++LFL+D++AG+T D I ++LR++ I ++V+NK D Sbjct: 65 EEGVEEKMAEQSLLAIEEADVVLFLVDARAGLTSADIGIANYLRQRQNKITVLVANKTDG 124 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLE---MIENNK- 179 A + E Y L EI +I+A G S L + ++ N LE +EN++ Sbjct: 125 IDADSHCAEFYQLGLGEIAQIAASQGRGVSALMEQVLAPIAERM-NTALEKQSAVENSEV 183 Query: 180 ---------------RNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLL 224 NEE + + + K K ++IA+VGRPNVGKSTL NR+L Sbjct: 184 SQDDEQDEWDQDFDFSNEEDTALLDDALAEETEKEQDKNIKIAIVGRPNVGKSTLTNRIL 243 Query: 225 GYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVR 284 G +R++ G TRDS+ I I DTAG+RK ++ ++E+ +V K++Q+++ Sbjct: 244 GEDRVVVYDLPGTTRDSIYIPMERDGQHYTIIDTAGVRKRGKVHLAVEKFSVIKTLQAIQ 303 Query: 285 TCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKN 344 ++ +DA QDL ++ + N G ++V+ +NKWD ++ + ++++ + Sbjct: 304 DANVVLLTIDAREGVSDQDLSLLGFILNAGRSLVIVVNKWDGLNQDIK--DQVKSELDRR 361 Query: 345 LPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIF 404 L I ++ IS G G+ +L S+ E ++TTS L LQ ++ PP + Sbjct: 362 LDFIDFARVHFISALHGSGVGNLFDSIKEAYACATQKMTTSMLTRILQMATDEHQPPMMS 421 Query: 405 NRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 R +LKY +PP ++ +K+P+SYKRYL N R + + G PIR+ FQ Sbjct: 422 GRRIKLKYAHPGGYNPPIIVVHGNQMDKLPDSYKRYLSNYYRRSLKIIGSPIRLLFQEGS 481 Query: 465 NPYIKK 470 NP+ K Sbjct: 482 NPFAGK 487 >gi|238797968|ref|ZP_04641458.1| GTP-binding protein engA [Yersinia mollaretii ATCC 43969] gi|238718173|gb|EEQ09999.1| GTP-binding protein engA [Yersinia mollaretii ATCC 43969] Length = 495 Score = 283 bits (724), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 166/483 (34%), Positives = 262/483 (54%), Gaps = 24/483 (4%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI IA+VG PNVGKSTLFNRL + A+V + PG+TRDR YG+A + G F ++DT GI Sbjct: 1 MIPVIALVGRPNVGKSTLFNRLTHTRDALVADFPGLTRDRKYGRAEVEGHEFIVIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M Q+ LAI EA ++LF++D++AG+ P D I LR + +V+NK Sbjct: 61 -DGTEDGVETKMAGQSLLAIEEADIVLFMVDARAGLMPADQGIAQHLRSREKATFLVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL-HSVIFKIFKQKYPNHPLEMIENNK 179 D + YSL E+ I+A H G ++L V+ + P L E N Sbjct: 120 TDGIDPDTATADFYSLGLGEVHAIAASHGRGVTQLIEDVMAPYIDAEEPEVELTDEEANA 179 Query: 180 R--------NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLT 231 +E P++++ + S P+++A+VGRPNVGKSTL NR+LG +R++ Sbjct: 180 AYWAAQEADGDEIPEDDVEDDFDPR----SLPIKLAIVGRPNVGKSTLTNRILGEDRVVV 235 Query: 232 GSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIV 291 G TRDS+ I + DTAG+RK ++TE++E+ +V K++Q++ ++ Sbjct: 236 YDLPGTTRDSIYIPMTRDEREYVLIDTAGVRKRGKVTETVEKFSVIKTLQAIEDSNVVLL 295 Query: 292 LLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSD----KLNLLQDLRTKAIKNLPQ 347 ++DA QDL ++ + N+G ++V+A+NKWD +++ ++ + DLR L Sbjct: 296 VIDARDGISDQDLSLLGFILNSGRSLVIAVNKWDGMTEEARAQVKDMLDLR------LGF 349 Query: 348 IGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRY 407 + I+ IS G G+ +L S+ E R+ TS L +Q + + PP + R Sbjct: 350 VDFARIHFISALHGSGVGNLFESIQEAYDCSTKRVGTSLLTRIMQMAEEDHQPPLVRGRR 409 Query: 408 NRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 +LKY +PP +I + +SYKRYL+N R + + G PIR+ F+ +NP+ Sbjct: 410 VKLKYAHAGGYNPPIVVIHGNQVTDLSDSYKRYLMNYFRRSLKVMGTPIRIQFKEGENPF 469 Query: 468 IKK 470 K Sbjct: 470 AGK 472 >gi|123441422|ref|YP_001005409.1| GTP-binding protein EngA [Yersinia enterocolitica subsp. enterocolitica 8081] gi|166225934|sp|A1JKS6|DER_YERE8 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|122088383|emb|CAL11174.1| putative GTP-binding protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 494 Score = 283 bits (723), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 168/478 (35%), Positives = 262/478 (54%), Gaps = 15/478 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI IA+VG PNVGKSTLFNRL + A+V + PG+TRDR YG+A + G F ++DT GI Sbjct: 1 MIPVIALVGRPNVGKSTLFNRLTHTRDALVADFPGLTRDRKYGRAEVEGHEFIVIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M Q+ LAI EA ++LF++D++AG+ P D I LR + +V+NK Sbjct: 61 -DGTEDGVETKMAGQSLLAIEEADIVLFMVDARAGLMPADQGIAQHLRSREKATFLVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL-HSVIFKIFKQKYPNHPLEMIENNK 179 D + YSL E+ I+A H G ++L V+ + P L E N Sbjct: 120 TDGIDPDTATADFYSLGLGEVHAIAASHGRGVTQLIEDVMAPYMDAEEPEAELTDEEANA 179 Query: 180 R---NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSG 236 +E+ ++ I + + +S P+++A+VGRPNVGKSTL NR+LG +R++ G Sbjct: 180 AYWAAQEADEDEIPEDEEDDFDPLSLPIKLAIVGRPNVGKSTLTNRILGEDRVVVYDMPG 239 Query: 237 ITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDAT 296 TRDS+ I + DTAG+RK +ITE++E+ +V K++Q++ ++++DA Sbjct: 240 TTRDSIYIPMTRDEREYILIDTAGVRKRGKITEAVEKFSVIKTLQAIEDSNVVLLVIDAR 299 Query: 297 IPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNL----LQDLRTKAIKNLPQIGDIY 352 QDL ++ + N+G ++V+A+NKWD +S++ + DLR L + Sbjct: 300 DGISDQDLSLLGFILNSGRSLVIAVNKWDGMSEEARAQVKDMLDLR------LGFVDFAR 353 Query: 353 INTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKY 412 I+ IS G G+ +L S+ E R+ TS L +Q + + PP + R +LKY Sbjct: 354 IHFISALHGSGVGNLFESIQEAYDCSTKRVGTSLLTRIMQMAEEDHQPPLVRGRRVKLKY 413 Query: 413 ITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I + +SYKRYL+N R + + G PIR+ F+ +NP+ K Sbjct: 414 AHAGGYNPPIVVIHGNQVTDLSDSYKRYLMNYFRRSLKVMGTPIRIQFKEGENPFAGK 471 >gi|145637903|ref|ZP_01793547.1| GTP-binding protein EngA [Haemophilus influenzae PittHH] gi|145268903|gb|EDK08862.1| GTP-binding protein EngA [Haemophilus influenzae PittHH] Length = 503 Score = 283 bits (723), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 169/482 (35%), Positives = 263/482 (54%), Gaps = 30/482 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG A I G F ++DT GI DG Sbjct: 6 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHIAGYDFIVIDTGGI-DGT 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKK-NIPIIIVSNKMDT 123 + ++M +Q+ LAI+EA ++LFL+D++AG+T D I ++LR++ N I+V+NK D Sbjct: 65 EEGVEEKMAEQSLLAIDEADIVLFLVDARAGLTAADIGIANYLRQRQNKTTIVVANKTDG 124 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR--- 180 A + E Y L EI +I+A G ++L + F +K N EN++ Sbjct: 125 IDADSHCAEFYQLGLGEIEQIAASQGRGVTQLMEQVLAPFAEKMENAD----ENDRTSEE 180 Query: 181 -----------NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRL 229 + E I + S + K ++IA+VGRPNVGKSTL NR+LG +R+ Sbjct: 181 EQDEWEQEFDFDSEEDTALIDEALEESEEEQDKNIKIAIVGRPNVGKSTLTNRILGEDRV 240 Query: 230 LTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETT 289 + G TRDS+ I + DTAG+RK ++ ++E+ +V K++Q+++ Sbjct: 241 VVFDMPGTTRDSIYIPMERDGQQYTLIDTAGVRKRGKVHLAVEKFSVIKTLQAIQDANVV 300 Query: 290 IVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIG 349 ++ +DA QDL ++ + N G ++V+ +NKWD L QD++ + L + Sbjct: 301 LLTIDARENISDQDLSLLGFILNAGRSLVIVVNKWD------GLDQDVKDRVKSELDRRL 354 Query: 350 DI----YINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFN 405 D ++ IS G G+ +L S+ E ++TTS L LQ ++ PP I Sbjct: 355 DFIDFARVHFISALHGSGVGNLFDSIKEAYACATQKMTTSLLTRILQMATDEHQPPMIGG 414 Query: 406 RYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 R +LKY +PP ++ +K+P+SYKRYL N R + + G PIR+ FQ N Sbjct: 415 RRIKLKYAHPGGYNPPIIVVHGNQMDKLPDSYKRYLSNYYRKSLKIIGSPIRLLFQEGAN 474 Query: 466 PY 467 P+ Sbjct: 475 PF 476 >gi|322421095|ref|YP_004200318.1| ribosome-associated GTPase EngA [Geobacter sp. M18] gi|320127482|gb|ADW15042.1| ribosome-associated GTPase EngA [Geobacter sp. M18] Length = 440 Score = 283 bits (723), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 157/458 (34%), Positives = 243/458 (53%), Gaps = 28/458 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTLFNRLV ++ A+V + PG+TRDR Y + + F +VDT G Sbjct: 5 IAIVGRPNVGKSTLFNRLVGRRKAMVDDMPGVTRDRNYAEVTRFDLPFILVDTGGFEPET 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + +QM +Q+ A++EA LILF++D++ G+TP D + LR+ N P+ + NK+D Sbjct: 65 SDKLLQQMREQSRFAMDEADLILFVMDARDGLTPADRDVVDMLRRINKPVFYIINKVDGE 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + N + YSL +I ISAEH+ G +L + L + N+ EE Sbjct: 125 KQEANSGDFYSLGVDQIHTISAEHNRGVGDLMDEV------------LAALPYNREKEED 172 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 E IT RIAVVGRPNVGKSTL+NRLLGY R++ +G TRD+V Sbjct: 173 --EEIT--------------RIAVVGRPNVGKSTLVNRLLGYERVVANPTAGTTRDAVDT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + P + DTAG+R+ + + +E+ +V +++S+ + +++L+A +QD Sbjct: 217 RFTVNKKPYLLIDTAGIRRKGKTVQKVEKYSVMDALRSIERADVVLIVLNAEEGVTEQDT 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 +I + G + +NKWD V + + + +N + I IS TG+ Sbjct: 277 KIAGYAYEAGRGCIFVVNKWDTVQKDNSTIGKFTEEIRRNFKYLPFAPILFISAETGQRT 336 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 ++ V ++ + + R+TT LN + +N P + + Y TQ+ PPSF Sbjct: 337 GKIIAEVDQVMEQYCKRVTTGELNRIFNQAVDENHAPLDGGKRVKFYYATQVAVKPPSFA 396 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 IF P I SY+RY++NR R F SG P+++ F+ Sbjct: 397 IFTNRPEGIHFSYERYIMNRFREAFGFSGTPLKLLFRG 434 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 55/178 (30%), Positives = 87/178 (48%), Gaps = 17/178 (9%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI- 60 I IA+VG PNVGKSTL NRL+ + V G TRD + + +N + ++DTAGI Sbjct: 175 ITRIAVVGRPNVGKSTLVNRLLGYERVVANPTAGTTRDAVDTRFTVNKKPYLLIDTAGIR 234 Query: 61 ADGKNCSIAKQMNDQTEL-AINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 GK ++ + L +I A ++L +++++ G+T D I + + I V N Sbjct: 235 RKGKTVQKVEKYSVMDALRSIERADVVLIVLNAEEGVTEQDTKIAGYAYEAGRGCIFVVN 294 Query: 120 KMD------------TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQ 165 K D T +RNF L F I+ ISAE T ++ + + ++ +Q Sbjct: 295 KWDTVQKDNSTIGKFTEEIRRNF---KYLPFAPILFISAETGQRTGKIIAEVDQVMEQ 349 >gi|237807666|ref|YP_002892106.1| small GTP-binding protein [Tolumonas auensis DSM 9187] gi|259645887|sp|C4LC41|DER_TOLAT RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|237499927|gb|ACQ92520.1| small GTP-binding protein [Tolumonas auensis DSM 9187] Length = 498 Score = 283 bits (723), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 164/484 (33%), Positives = 264/484 (54%), Gaps = 28/484 (5%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YGQA+++ + F +VDT GI Sbjct: 1 MTPVVALVGRPNVGKSTLFNRLTRSRDALVADFPGLTRDRKYGQAVVDDMNFIVVDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG I +M +Q+ AI+E+ ++LF++D++AG+T D I + LR++ + +V+NK Sbjct: 61 -DGSEEGIEVKMAEQSLQAIDESDVVLFMVDARAGVTSADIGIANHLRRQKKKVFLVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLG-TSELHSVIFKIFKQ------------KY 167 D + + YSL E+ +I+A H G TS L + F++ + Sbjct: 120 TDGLDGDVHCADFYSLALGEVYQIAASHGRGVTSLLEKALAPFFEELTGKSAEEEAADED 179 Query: 168 PNHPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYN 227 + + E+ E +T E + + P++ A++GRPNVGKSTL NR+LG + Sbjct: 180 AAYWAAFEGTDVTEEDESDEELTGEDRYA----DLPIKFAIIGRPNVGKSTLTNRMLGED 235 Query: 228 RLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCE 287 R++ G TRDS+ I + + DTAG+RK +I E++E+ +V K++Q++ Sbjct: 236 RVIVYDLPGTTRDSIYIPLERDDQHYIVIDTAGVRKKKKIYETVEKFSVVKTLQAIEDAN 295 Query: 288 TTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQ 347 ++L+DA QDL ++ ++G ++V+A+NKWD L QD + K ++L + Sbjct: 296 VVLLLIDAREGVSDQDLSLLGFTLHSGRSIVIAVNKWD------GLDQDTKEKIKEDLER 349 Query: 348 ----IGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTI 403 + ++ IS G G+ +L S+ E + RI+TS L + + PP + Sbjct: 350 RLGFVDFARVHFISALHGSGVGNLFDSIQEAYRSATKRISTSMLTRIMNMAAEDHQPPLV 409 Query: 404 FNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSS 463 R +LKY +PP +I +PESYKRYLIN R + + G PI + FQ Sbjct: 410 RGRRVKLKYAHAGGYNPPRIIIHGNQVKDLPESYKRYLINYYRKSLKIMGTPIHIEFQEG 469 Query: 464 KNPY 467 NP+ Sbjct: 470 DNPF 473 >gi|153872876|ref|ZP_02001641.1| Small GTP-binding protein domain [Beggiatoa sp. PS] gi|152070659|gb|EDN68360.1| Small GTP-binding protein domain [Beggiatoa sp. PS] Length = 515 Score = 283 bits (723), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 174/499 (34%), Positives = 267/499 (53%), Gaps = 35/499 (7%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ TI IVG PNVGKSTLFN L K + A+V + PG+TRDR G+ + + I+DT G+ Sbjct: 1 MLSTIVIVGRPNVGKSTLFNALTKTRDALVADQPGLTRDRRIGRGCVGDSDYWIIDTGGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + ++ +I ++++ Q LAI EA +LFL+D + G+T D IT +LR+ N PI +V NK Sbjct: 61 ST-EDDAILERISHQARLAIKEADGVLFLVDGRGGLTGGDQEITQYLRRFNTPIFLVINK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQK--YPNHPLEMIENN 178 + E Y L F+ I ISA H G ++L + I Q + L E Sbjct: 120 AEGLQKDLVSAEFYQLGFENIHAISAVHRQGINDLMDAVLPIISQYSLISSALLTTEEET 179 Query: 179 KRNEESPK---ENITSEGKSSVKNI---------------------SKPLRIAVVGRPNV 214 E P +N TS SS K + +++A++GRPNV Sbjct: 180 NEAEADPAWSWKNTTSSVSSSDKTTPALFGGYSLYTAALQEEPPSKEQGIKVAIIGRPNV 239 Query: 215 GKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQK 274 GKSTL+NR+LGY R++T Q G TRDS+ I + + DTAG+R+ +R++E +E+ Sbjct: 240 GKSTLVNRMLGYERVITFDQPGTTRDSIFIPFERDGQLYTLIDTAGVRRRARVSEKIEKF 299 Query: 275 TVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLL 334 +V KS+Q++ T I+LLD QD ++ V ++G A+++A+NKWD + Sbjct: 300 SVIKSLQAIETGNVVIMLLDGREGITDQDANLLGIVIDSGCALIIAVNKWDGLEKSHR-- 357 Query: 335 QDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKT---RITTSYLNSWL 391 + +R + L + ++ IS G + L S IN +WK +I T +LN L Sbjct: 358 EQVRYHLSRKLQFLDFAKVHFISALHGSNVGHLFES---INAVWKNANKQIKTQHLNKVL 414 Query: 392 QKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSL 451 Q+ + + PP + R +L+Y Q +PP FLI+ ++P +Y+RYLIN R F+L Sbjct: 415 QEAVMAHAPPLVRGRRVKLRYAHQGGQNPPRFLIYGNQVKELPNAYQRYLINYFRKVFAL 474 Query: 452 SGIPIRMCFQSSKNPYIKK 470 G PI + F+ NP+ + Sbjct: 475 EGTPIHLEFKQGDNPFAGR 493 >gi|312884308|ref|ZP_07744017.1| GTP-binding protein EngA [Vibrio caribbenthicus ATCC BAA-2122] gi|309368081|gb|EFP95624.1| GTP-binding protein EngA [Vibrio caribbenthicus ATCC BAA-2122] Length = 495 Score = 283 bits (723), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 163/474 (34%), Positives = 266/474 (56%), Gaps = 7/474 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YGQA + F ++DT GI Sbjct: 1 MIPVVALVGRPNVGKSTLFNRLTRSRDALVADFPGLTRDRKYGQAKLGEHEFIVIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ AI+EA ++LF++D +AG+TP D AI++ LRK P ++V NK Sbjct: 61 -DGTEEGVETKMAEQSLAAIDEADVVLFMVDGRAGLTPADIAISNHLRKLAKPSMLVVNK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D A + + L ++ +I+A H G L F ++ +IE+ Sbjct: 120 VDGIDADAASADFWQLGVDDMYQIAAAHGRGVGALIDRALNPFAEEMIAQEQGVIEDLTD 179 Query: 181 NEESPKENITSEGKSSVKNISK----PLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSG 236 + +E + + + + + P+++A++GRPNVGKSTL NR+LG R++ G Sbjct: 180 FVDQDEEVLEYTEEEAEQEFQRLQDQPIKLAIIGRPNVGKSTLTNRILGEERVVVYDMPG 239 Query: 237 ITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDAT 296 TRDS+ I + DTAG+R+ RI E++E+ +V K+++++ ++++DA Sbjct: 240 TTRDSIYIPMERDGREYVLIDTAGVRRRKRINETVEKFSVVKTLKAIEDANVVLLVIDAR 299 Query: 297 IPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTI 356 QDL ++ N G ++VLA+NKWD + +++ + ++ + + L + ++ I Sbjct: 300 ENISDQDLSLLGFALNAGRSIVLAVNKWDGLD--MDVKEHVKKELDRRLGFVDFARLHFI 357 Query: 357 SGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQI 416 S G G+ L SV E K TR+ TS L ++ + PP + R +LKY Sbjct: 358 SALHGTGVGHLFESVQEAYKSATTRVGTSVLTRIMKMATDDHQPPMVRGRRVKLKYAHAG 417 Query: 417 QSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I N++P+SYKRYL+N R + + G PIR+ FQ+S NP+ K Sbjct: 418 GYNPPLVVIHGNQVNELPDSYKRYLMNYYRKSLEIMGTPIRIQFQNSDNPFEGK 471 >gi|329121290|ref|ZP_08249917.1| ribosome-associated GTPase EngA [Dialister micraerophilus DSM 19965] gi|327470224|gb|EGF15687.1| ribosome-associated GTPase EngA [Dialister micraerophilus DSM 19965] Length = 443 Score = 283 bits (723), Expect = 6e-74, Method: Compositional matrix adjust. Identities = 167/465 (35%), Positives = 253/465 (54%), Gaps = 36/465 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST+ N L +K++++V + PG+TRDR+Y A F ++DT GI + Sbjct: 6 VAIVGRPNVGKSTIINGLAQKRVSIVEDLPGVTRDRIYCDAQWLDREFTLIDTGGIEFRE 65 Query: 65 NCS-IAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 I+ + Q +LAI EA +ILF+ D + G+ D I LRK P+++ NK+DT Sbjct: 66 EADQISDGIRMQAQLAIEEADVILFVTDVRVGLLDDDVTIAEILRKTGKPVVVAVNKVDT 125 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + YE Y+L + + ISA + +G +L I + +P + E Sbjct: 126 EAQEMDVYEFYALGLGDPIGISASNRVGFGDLLDKI----SEGFPKY-----------EA 170 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 E+I +R A+VGRPNVGKSTL+N LLGY R L + G TRD++ Sbjct: 171 RESEDI--------------IRTAIVGRPNVGKSTLVNSLLGYERSLVADEMGTTRDAID 216 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 W K + DTAGMRK ++I E LE+ +V +S++++ C+ + +LDA +QD Sbjct: 217 SLWTHKGKKFVLVDTAGMRKKNKIDEPLEKYSVIRSIRAIDDCDVAVFVLDAKDMLTEQD 276 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE- 362 +I+ + G ++L +NKWD+V + D K LP + I SG T + Sbjct: 277 KKIIGYIHEAGKGLILMVNKWDIVEKDTHTSVDFEKKIRNGLPFAPYVRILFGSGLTKQR 336 Query: 363 --GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 L DL+ SV E + RI+TS LN L+ ++ NPPP + ++ Y+TQ+ P Sbjct: 337 IHKLGDLIYSVAEQQSM---RISTSVLNDLLEDAKIINPPPAHAGKLAKIYYMTQVGIRP 393 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 P+F++F N I SY RY+ NRLR +FS SG PIR+ +S ++ Sbjct: 394 PTFVMFVNDVNLIHFSYVRYIENRLRESFSFSGTPIRIVVRSKRD 438 >gi|163749553|ref|ZP_02156800.1| GTP-binding protein EngA [Shewanella benthica KT99] gi|161330663|gb|EDQ01600.1| GTP-binding protein EngA [Shewanella benthica KT99] Length = 492 Score = 283 bits (723), Expect = 6e-74, Method: Compositional matrix adjust. Identities = 163/473 (34%), Positives = 259/473 (54%), Gaps = 18/473 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A ++G F +VDT GI Sbjct: 1 MIPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRASLSGYEFIVVDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG I M Q+ AI EA ++LFL D++AG+T DHAI LR+++ +V+NK Sbjct: 61 -DGTEEGIEVHMAQQSLAAIEEADVVLFLTDARAGLTAADHAIAEHLRRRDKTTFVVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D A E ++L E+ +++A G + + + + H R Sbjct: 120 IDGIDADSACAEFWALGLGEVYQMAASQGRGVTNMIEYALAPYAEALGLH---------R 170 Query: 181 NEESPKENITSEGKSSVKNISK------PLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQ 234 + E E E + P+++A++G+PNVGKSTLINR+LG R++ Sbjct: 171 DGEGDIEVEEREYSEEEAEAEQKRLQDLPIKLAIIGKPNVGKSTLINRILGEERVVVYDS 230 Query: 235 SGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLD 294 G TRDS+ I + + DTAG+R+ S++ E++E+ +V K++++V C ++++D Sbjct: 231 PGTTRDSIYIPMVREGREYVLIDTAGVRRRSKVNETVEKFSVIKTLKAVEDCNVVLLIID 290 Query: 295 ATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYIN 354 A +QDL ++ N G A+V+A+NKWD + ++ ++++ + L I I+ Sbjct: 291 AREGITEQDLGLLGFALNAGRALVIAVNKWDGIDQEIK--DRVKSELDRRLGFIDFARIH 348 Query: 355 TISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYIT 414 IS G G+ L SV E R++TS L +Q Q + PP + R +LKY Sbjct: 349 FISALHGTGVGHLYESVEEAYDSATRRVSTSMLTRIMQMAQDDHQPPLVNGRRVKLKYAH 408 Query: 415 QIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 +PP +I K+P+SYKRY++N R + + G PI++ FQ NP+ Sbjct: 409 AGGYNPPIVVIHGNQVKKLPDSYKRYMMNYYRRSLKVMGTPIQVRFQDGANPF 461 >gi|77919007|ref|YP_356822.1| GTP-binding protein EngA [Pelobacter carbinolicus DSM 2380] gi|123574290|sp|Q3A4Q5|DER_PELCD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|77545090|gb|ABA88652.1| putative Era-like GTP-binding protein [Pelobacter carbinolicus DSM 2380] Length = 439 Score = 283 bits (723), Expect = 6e-74, Method: Compositional matrix adjust. Identities = 155/460 (33%), Positives = 249/460 (54%), Gaps = 33/460 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNR++ + A+V ++PG+TRDR Y Q G F ++DT G Sbjct: 4 VAIVGRPNVGKSTLFNRILGTRRAIVEDYPGVTRDRNYAQVTRYGTPFVLIDTGGFEPAS 63 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + KQM +Q+ELA+ EA +ILF++D+K G+TP D + LR+ P++ V NK+D Sbjct: 64 QNRLLKQMREQSELAVEEADVILFVVDAKEGLTPSDDEVAGMLRRSGKPVLYVVNKVDGD 123 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + E Y+L ++ +SAEH G +L + + + K + S Sbjct: 124 SHEAAASEFYALGVDQLYTVSAEHGRGMDDLMAAVLAA-----------LPAPAKLDARS 172 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 +E R+AV+GRPNVGKS+LINR++G RL+ +G TRDS+ Sbjct: 173 CEET----------------RLAVIGRPNVGKSSLINRMIGVERLVANPTAGTTRDSIDT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + + DTAG+R+ R+ + LE+ +V +S++++ +V++DA +QDL Sbjct: 217 PFVYNKKSYVLIDTAGIRRKGRVQQKLEKYSVIQSLKAMERAHVVLVVIDAEEGVTEQDL 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTK---AIKNLPQIGDIYINTISGRTG 361 + G AV+L +NKWD+V+ ++ K A K LP I+++ +SG+ Sbjct: 277 TVAGYALERGRAVLLVVNKWDLVTKDHGTMKQYTEKVRHAFKFLPFAPIIFVSALSGQR- 335 Query: 362 EGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 + +M V ++ + ++ T LN L++ L + PP + + + Y+TQ PP Sbjct: 336 --VSKIMAEVEKVAIEFNRQVPTGVLNRVLEEAVLSHAPPMVQGKRLKFYYMTQTGVRPP 393 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 SF++F + SY+RYL N+LR F SG PIR+ F+ Sbjct: 394 SFVVFGNRATGVHFSYERYLSNKLREAFGFSGCPIRLKFK 433 >gi|253689379|ref|YP_003018569.1| small GTP-binding protein [Pectobacterium carotovorum subsp. carotovorum PC1] gi|259645883|sp|C6DBH0|DER_PECCP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|251755957|gb|ACT14033.1| small GTP-binding protein [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 495 Score = 283 bits (723), Expect = 6e-74, Method: Compositional matrix adjust. Identities = 165/487 (33%), Positives = 262/487 (53%), Gaps = 32/487 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A + G F IVDT GI Sbjct: 1 MIPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGHEFIIVDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M Q+ +AI EA ++LF++D++AG+ P D I LR + ++V+NK Sbjct: 61 -DGTEDGVETRMAGQSLVAIEEADIVLFMVDARAGLMPADEGIAKHLRSREKTTVLVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKY------------- 167 D + YSL E+ I+A H G + L + F Q Sbjct: 120 TDGLDPDMVTADFYSLGMGEVYPIAASHGRGVTSLLETVLLPFVQDEIEEPVELSEEEEN 179 Query: 168 PNHPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYN 227 + + + + +EE +++ E P+++A+VGRPNVGKSTL NR+LG Sbjct: 180 AAYWAALEADEQASEEEAEDDFNPE--------DLPIKLAIVGRPNVGKSTLTNRILGEE 231 Query: 228 RLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCE 287 R++ G TRDS+ I + DTAG+RK ++TE++E+ +V K++Q++ Sbjct: 232 RVVVFDMPGTTRDSIYIPMVRDEREYVLIDTAGVRKRGKVTETVEKFSVIKTLQAIEDAN 291 Query: 288 TTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLP- 346 ++++DA QDL ++ + N+G ++V+ +NKWD +S Q++R + + L Sbjct: 292 VVLLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWDGLS------QEVREQVKETLDL 345 Query: 347 QIGDI---YINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTI 403 ++G I I+ IS G G+ +L SV E R++T+ L +Q + PP + Sbjct: 346 RLGFIDFARIHFISALHGSGVGNLFESVTEAYACATRRVSTAMLTRIMQMASDDHQPPLV 405 Query: 404 FNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSS 463 R +LKY +PP +I +P+SYKRYL+N R + + G PIR+ F+ Sbjct: 406 RGRRVKLKYAHAGGYNPPIVVIHGNQVKDLPDSYKRYLMNYYRRSLDVMGTPIRIQFKEG 465 Query: 464 KNPYIKK 470 +NP+ K Sbjct: 466 ENPFADK 472 >gi|292492503|ref|YP_003527942.1| small GTP-binding protein [Nitrosococcus halophilus Nc4] gi|291581098|gb|ADE15555.1| small GTP-binding protein [Nitrosococcus halophilus Nc4] Length = 464 Score = 282 bits (722), Expect = 7e-74, Method: Compositional matrix adjust. Identities = 162/467 (34%), Positives = 252/467 (53%), Gaps = 29/467 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG A F +VDT GI Sbjct: 1 MKALVALVGRPNVGKSTLFNRLTRSRDALVADQPGVTRDRKYGIARYGEQSFLVVDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + + + + M Q +LAI EA +ILFL+D + G++ D I LR+ P+ +V NK Sbjct: 61 TE-QESGVGELMRVQAQLAIEEADIILFLVDGREGLSALDETIAEQLRRAQKPLKLVINK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + R + E Y L E ISA+ G L + + PL Sbjct: 120 TEGRDQELVASEFYRLGLGEPATISAQQGQGVGGLLQDLSTLL-------PL-------- 164 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 EGK ++ L+ AVVGRPNVGKSTL+NRLLG R+L+ G TRD Sbjct: 165 -----------EGKEEAGIQARGLQFAVVGRPNVGKSTLVNRLLGEERVLSFEAPGTTRD 213 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S++I + + + DTAG+R+ S+I + LE+ ++ K+++++ + I+++DA Sbjct: 214 SIAIPFCHQGQDYTLVDTAGIRRRSKILDMLEKFSIAKTLEAIEAAQVVILVIDAREGVV 273 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 +QDL + + +G AVV+A+NKWD +S + + ++ + LP + ++ IS Sbjct: 274 EQDLHLAGLILESGKAVVIAVNKWDGLSS--DQRRKVKADLDRRLPFLDFARVHFISALH 331 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G G+ +L S+ + + + T+ LN L ++PPP + R +L+Y Q +P Sbjct: 332 GSGVGELFPSIDKAYRSANCHLPTAELNQALAAAVEKHPPPVVKGRRIKLRYAHQGGHNP 391 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 P +I + +P +YKRYLIN R F+L G PI + F++ KNP+ Sbjct: 392 PKIIIHGSQAEAVPVNYKRYLINYFRTAFALVGTPIALEFRTVKNPF 438 >gi|319898104|ref|YP_004136301.1| gtp-binding protein [Haemophilus influenzae F3031] gi|309750447|gb|ADO80431.1| GTP-binding protein EngA [Haemophilus influenzae R2866] gi|317433610|emb|CBY81994.1| predicted GTP-binding protein [Haemophilus influenzae F3031] Length = 504 Score = 282 bits (722), Expect = 7e-74, Method: Compositional matrix adjust. Identities = 171/483 (35%), Positives = 268/483 (55%), Gaps = 31/483 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG A I G F ++DT GI DG Sbjct: 6 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHIAGYDFIVIDTGGI-DGT 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKK-NIPIIIVSNKMDT 123 + ++M +Q+ LAI+EA ++LFL+D++AG+T D I ++LR++ N I+V+NK D Sbjct: 65 EEGVEEKMAEQSLLAIDEADIVLFLVDARAGLTAADIGIANYLRQRQNKTTIVVANKTDG 124 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 A + E Y L EI +I+A G ++L + F +K N EN++ +EE Sbjct: 125 IDADSHCAEFYQLGLGEIEQIAASQGRGVTQLMEQVLAPFAEKMENAD----ENDRTSEE 180 Query: 184 SPKE-----NITSEGKSSV----------KNISKPLRIAVVGRPNVGKSTLINRLLGYNR 228 E + SE +++ + K ++IA+VGRPNVGKSTL NR+LG +R Sbjct: 181 EQDEWEQEFDFDSEEDTALIDDALDEELEEEQDKNIKIAIVGRPNVGKSTLTNRILGEDR 240 Query: 229 LLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCET 288 ++ G TRDS+ I + DTAG+RK ++ ++E+ +V K++Q+++ Sbjct: 241 VVVFDMPGTTRDSIYIPMERDGQQYTLIDTAGVRKRGKVHLAVEKFSVIKTLQAIQDANV 300 Query: 289 TIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQI 348 ++ +DA QDL ++ + N G ++V+ +NKWD L QD++ + L + Sbjct: 301 VLLTIDARENISDQDLSLLGFILNAGRSLVIVVNKWD------GLDQDVKDRVKSELDRR 354 Query: 349 GDIY----INTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIF 404 D ++ IS G G+ +L S+ E ++TTS L LQ ++ PP I Sbjct: 355 LDFIDFARVHFISALHGSGVGNLFDSIKEAYACATQKMTTSLLTRILQMATDEHQPPMIG 414 Query: 405 NRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 R +LKY +PP ++ +K+P+SYKRYL N R + + G PIR+ FQ Sbjct: 415 GRRIKLKYAHPGGYNPPIIVVHGNQMDKLPDSYKRYLSNYYRKSLKIIGSPIRLLFQEGA 474 Query: 465 NPY 467 NP+ Sbjct: 475 NPF 477 >gi|271501567|ref|YP_003334593.1| ribosome-associated GTPase EngA [Dickeya dadantii Ech586] gi|270345122|gb|ACZ77887.1| ribosome-associated GTPase EngA [Dickeya dadantii Ech586] Length = 498 Score = 282 bits (722), Expect = 7e-74, Method: Compositional matrix adjust. Identities = 168/484 (34%), Positives = 260/484 (53%), Gaps = 23/484 (4%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A + G F I+DT GI Sbjct: 1 MIPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGNEFIIIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ LAI EA ++LFL+D++ G+ P D+AI LR + +V+NK Sbjct: 61 -DGTEDGVETRMAEQSLLAIEEADIVLFLVDARDGLMPADYAIAQHLRSREKDTFLVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D + YSL ++ I+A H G + L + F + E+ E Sbjct: 120 VDGIDIDTGIADFYSLGLGDVYPIAASHGRGVTSLLEKVLLPFATEPLQEARELTEEEA- 178 Query: 181 NEESPKENITSEGKSSVKNI----------SKPLRIAVVGRPNVGKSTLINRLLGYNRLL 230 N E + EG ++ P+++A+VGRPNVGKSTL NR+LG +R++ Sbjct: 179 NAAYWAEQL-GEGDDGIEGDDVDDEAPNFEGLPIKLAIVGRPNVGKSTLTNRILGEDRVV 237 Query: 231 TGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTI 290 G TRDS+ I + DTAG+RK +IT+++E+ +V K++Q++ + Sbjct: 238 VYDMPGTTRDSIYIPMERDGRDYVLIDTAGVRKRGKITDTVEKFSVIKTLQAIEDANVVL 297 Query: 291 VLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD----MVSDKLNLLQDLRTKAIKNLP 346 +++DA QDL ++ + N+G ++V+ +NKWD V D++ DLR L Sbjct: 298 LVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWDGLTQEVKDQVKETLDLR------LG 351 Query: 347 QIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNR 406 I I+ IS G G+ +L SV E + R+ T+ L +Q + PP + R Sbjct: 352 FIDFARIHFISALHGSGVGNLFESVNEAYECSTRRVGTAMLTRIMQMAVDDHQPPLVRGR 411 Query: 407 YNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNP 466 +LKY +PP +I +P+SYKRYL+N R + + G PIR+ F+ +NP Sbjct: 412 RVKLKYAHAGGYNPPIVVIHGNQVKDLPDSYKRYLMNYYRRSLDVMGTPIRIQFKEGENP 471 Query: 467 YIKK 470 + K Sbjct: 472 FANK 475 >gi|332162632|ref|YP_004299209.1| GTP-binding protein EngA [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318606735|emb|CBY28233.1| GTP-binding protein EngA [Yersinia enterocolitica subsp. palearctica Y11] gi|325666862|gb|ADZ43506.1| GTP-binding protein EngA [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330859281|emb|CBX69631.1| GTP-binding protein engA [Yersinia enterocolitica W22703] Length = 494 Score = 282 bits (722), Expect = 7e-74, Method: Compositional matrix adjust. Identities = 166/484 (34%), Positives = 259/484 (53%), Gaps = 27/484 (5%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI IA+VG PNVGKSTLFNRL + A+V + PG+TRDR YG+A + G F ++DT GI Sbjct: 1 MIPVIALVGRPNVGKSTLFNRLTHTRDALVADFPGLTRDRKYGRAEVEGHEFIVIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M Q+ LAI EA ++LF++D++AG+ P D I LR + +V+NK Sbjct: 61 -DGTEDGVETKMAGQSLLAIEEADIVLFMVDARAGLMPADQGIAQHLRSREKATFLVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 D + YSL E+ I+A H G ++L + P E +E Sbjct: 120 TDGIDPDTATADFYSLGLGEVHAIAASHGRGVTQLIEDVMA------PYMDAEELEAELT 173 Query: 181 NEESPKENITSEGKSSVKN----------ISKPLRIAVVGRPNVGKSTLINRLLGYNRLL 230 +EE+ ++ + +S P+++A+VGRPNVGKSTL NR+LG +R++ Sbjct: 174 DEEANAAYWAAQEADEDEIPEDEEDDFDPLSLPIKLAIVGRPNVGKSTLTNRILGEDRVV 233 Query: 231 TGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTI 290 G TRDS+ I + DTAG+RK +ITE++E+ +V K++Q++ + Sbjct: 234 VYDMPGTTRDSIYIPMTRDEREYILIDTAGVRKRGKITEAVEKFSVIKTLQAIEDSNVVL 293 Query: 291 VLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNL----LQDLRTKAIKNLP 346 +++DA QDL ++ + N+G ++V+A+NKWD +S++ + DLR L Sbjct: 294 LVIDARDGISDQDLSLLGFILNSGRSLVIAVNKWDGMSEEARAQVKDMLDLR------LG 347 Query: 347 QIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNR 406 + I+ IS G G+ +L S+ E R+ TS L +Q + + PP + R Sbjct: 348 FVDFARIHFISALHGSGVGNLFESIQEAYDCSTKRVGTSLLTRIMQMAEEDHQPPLVRGR 407 Query: 407 YNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNP 466 +LKY +PP +I + +SYKRYL+N R + + G PIR+ F+ +NP Sbjct: 408 RVKLKYAHAGGYNPPIVVIHGNQVTDLSDSYKRYLMNYFRRSLKVMGTPIRIQFKEGENP 467 Query: 467 YIKK 470 + K Sbjct: 468 FAGK 471 >gi|319775992|ref|YP_004138480.1| GTP-binding protein [Haemophilus influenzae F3047] gi|329123858|ref|ZP_08252415.1| ribosome-associated GTPase EngA [Haemophilus aegyptius ATCC 11116] gi|317450583|emb|CBY86800.1| predicted GTP-binding protein [Haemophilus influenzae F3047] gi|327468821|gb|EGF14295.1| ribosome-associated GTPase EngA [Haemophilus aegyptius ATCC 11116] Length = 504 Score = 282 bits (722), Expect = 7e-74, Method: Compositional matrix adjust. Identities = 171/483 (35%), Positives = 268/483 (55%), Gaps = 31/483 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG A I G F ++DT GI DG Sbjct: 6 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHIAGYDFIVIDTGGI-DGT 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKK-NIPIIIVSNKMDT 123 + ++M +Q+ LAI+EA ++LFL+D++AG+T D I ++LR++ N I+V+NK D Sbjct: 65 EEGVEEKMAEQSLLAIDEADIVLFLVDARAGLTAADIGIANYLRQRQNKTTIVVANKTDG 124 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 A + E Y L EI +I+A G ++L + F +K N EN++ +EE Sbjct: 125 IDADSHCAEFYQLGLGEIEQIAASQGRGVTQLMEQVLAPFAEKMENAD----ENDRTSEE 180 Query: 184 SPKE-----NITSEGKSSV----------KNISKPLRIAVVGRPNVGKSTLINRLLGYNR 228 E + SE +++ + K ++IA+VGRPNVGKSTL NR+LG +R Sbjct: 181 EQDEWEQEFDFDSEEDTALIDDALDEELEEEQDKNIKIAIVGRPNVGKSTLTNRILGEDR 240 Query: 229 LLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCET 288 ++ G TRDS+ I + DTAG+RK ++ ++E+ +V K++Q+++ Sbjct: 241 VVVFDMPGTTRDSIYIPMERDGQQYTLIDTAGVRKRGKVHLAVEKFSVIKTLQAIQDANV 300 Query: 289 TIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQI 348 ++ +DA QDL ++ + N G ++V+ +NKWD L QD++ + L + Sbjct: 301 VLLTIDARENISDQDLSLLGFILNAGRSLVIVVNKWD------GLDQDVKDRVKSELDRR 354 Query: 349 GDIY----INTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIF 404 D ++ IS G G+ +L S+ E ++TTS L LQ ++ PP I Sbjct: 355 LDFIDFARVHFISALHGSGVGNLFDSIKEAYACATQKMTTSLLTRILQMATDEHQPPMIG 414 Query: 405 NRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 R +LKY +PP ++ +K+P+SYKRYL N R + + G PIR+ FQ Sbjct: 415 GRRIKLKYAHPGGYNPPIIVVHGNQMDKLPDSYKRYLSNYYRKSLKIIGSPIRLLFQEGS 474 Query: 465 NPY 467 NP+ Sbjct: 475 NPF 477 >gi|254228662|ref|ZP_04922086.1| GTP-binding protein EngA [Vibrio sp. Ex25] gi|262395114|ref|YP_003286968.1| GTP-binding protein EngA [Vibrio sp. Ex25] gi|151938841|gb|EDN57675.1| GTP-binding protein EngA [Vibrio sp. Ex25] gi|262338708|gb|ACY52503.1| GTP-binding protein EngA [Vibrio sp. Ex25] Length = 498 Score = 282 bits (722), Expect = 8e-74, Method: Compositional matrix adjust. Identities = 167/474 (35%), Positives = 265/474 (55%), Gaps = 10/474 (2%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGV-IFNIVDTAG 59 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YGQA + F ++DT G Sbjct: 1 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQARLGEEHEFIVIDTGG 60 Query: 60 IADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 I DG + +M +Q+ AI+EA ++LFL+D +AG+TP D AI + LRK P ++V N Sbjct: 61 I-DGTEEGVETKMAEQSLAAIDEADVVLFLVDGRAGLTPSDAAIAAHLRKIEKPAMLVVN 119 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLG-TSELHSVIFKIFKQKYPNHPLE-MIEN 177 K+D A + + L ++ +I+A H G T+ L + F + E IE+ Sbjct: 120 KIDGIDADAACADFWQLGVDDMYQIAAAHGRGVTALLERALSPFFDDLLTSESEEGEIED 179 Query: 178 --NKRNEESPKENITSE-GKSSVKNI-SKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGS 233 +EE E+ T E ++ K + +P+++A++GRPNVGKSTL NR+LG R++ Sbjct: 180 LTGFEDEEPLVEDYTEEDAEAEFKRLQEQPIKLAIIGRPNVGKSTLTNRILGEERVVVYD 239 Query: 234 QSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLL 293 G TRDS+ I + DTAG+R+ RI E++E+ +V K++++V ++++ Sbjct: 240 MPGTTRDSIYIPMERDGREYVLIDTAGVRRRGRINETVEKFSVVKTLKAVEDANVVLLVI 299 Query: 294 DATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYI 353 DA QDL ++ N G ++V+A+NKWD + + + ++ + + L + I Sbjct: 300 DARENISDQDLSLLGFALNAGRSIVIAVNKWDGLDSDVK--ESVKKELDRRLGFVDFARI 357 Query: 354 NTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYI 413 + IS G G+ L S+ E TR+ TS L ++ + PP + R +LKY Sbjct: 358 HFISALHGTGVGHLFESIQEAYNSATTRVGTSVLTRIMKMAVDDHQPPMVRGRRIKLKYA 417 Query: 414 TQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 +PP +I ++P+SYKRYL+N R + + G PIR+ F +S NPY Sbjct: 418 HAGGYNPPIVVIHGNMVRELPDSYKRYLMNYFRKSLEIMGTPIRINFHNSDNPY 471 >gi|209694322|ref|YP_002262250.1| GTP-binding protein EngA [Aliivibrio salmonicida LFI1238] gi|238058970|sp|B6EGZ1|DER_ALISL RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|208008273|emb|CAQ78418.1| GTP-binding protein [Aliivibrio salmonicida LFI1238] Length = 500 Score = 282 bits (721), Expect = 9e-74, Method: Compositional matrix adjust. Identities = 160/482 (33%), Positives = 268/482 (55%), Gaps = 25/482 (5%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI +A+VG PNVGKSTLFNR+ + + A+V + PG+TRDR YG+A + F ++DT GI Sbjct: 1 MIPVVALVGRPNVGKSTLFNRVTRTRDALVADFPGLTRDRKYGRAKLEEQEFILIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ AI EA ++LF++D +AG+T D AI LR + P +V NK Sbjct: 61 -DGTEEGVETKMAEQSLAAIEEADVVLFMVDGRAGLTSSDEAIAKHLRSREKPTFLVVNK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D A E + L ++ +I+A H G + L + F + E++E + R Sbjct: 120 IDGIDADAASAEFWQLGMSKVYQIAASHGRGVTSLLELALAPFME-------ELVEESLR 172 Query: 181 NEESP-------------KENITSEG--KSSVKNISKPLRIAVVGRPNVGKSTLINRLLG 225 +E ++++T E K + +P+++A++GRPNVGKSTLINR+LG Sbjct: 173 DENGEITDLTEFEDFEDEEKDLTEEDAEKDFARLQDQPIKLAIIGRPNVGKSTLINRILG 232 Query: 226 YNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRT 285 R++ G TRDS+ I + + DTAG+R+ RI E++E+ +V K+++++ Sbjct: 233 EERVVVYDMPGTTRDSIYIPMEREGQEYVLIDTAGVRRRGRINETVEKFSVIKTLKAIED 292 Query: 286 CETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNL 345 ++++DA QDL ++ N G ++V+A+NKWD +++++ + ++++ + L Sbjct: 293 ANVVLLVIDARENISDQDLSLLGFALNAGRSLVIAVNKWDGLNNEVK--EKVKSELDRRL 350 Query: 346 PQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFN 405 + ++ IS G G+ L SV E R+ TS L ++ Q + PP + Sbjct: 351 GFVDFARLHFISALHGTGVGHLYESVQEAYVSATKRVGTSVLTRVMKMAQDDHQPPMVRG 410 Query: 406 RYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 R +LKY +PP +I ++P SYKR+L+N R + + G PIR+ FQ+S+N Sbjct: 411 RRVKLKYAHAGGYNPPLIVIHGNQVKELPSSYKRFLMNYFRKSLEIMGTPIRIQFQNSEN 470 Query: 466 PY 467 P+ Sbjct: 471 PF 472 >gi|309972741|gb|ADO95942.1| GTP-binding protein EngA [Haemophilus influenzae R2846] Length = 504 Score = 282 bits (721), Expect = 9e-74, Method: Compositional matrix adjust. Identities = 170/483 (35%), Positives = 268/483 (55%), Gaps = 31/483 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG A I G F ++DT GI DG Sbjct: 6 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHIAGYDFIVIDTGGI-DGT 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPI-IIVSNKMDT 123 + ++M +Q+ LAI+EA ++LFL+D++AG+T D I ++LR++ I ++V+NK D Sbjct: 65 EEGVEEKMAEQSLLAIDEADIVLFLVDARAGLTAADIGIANYLRQRQNKITVVVANKTDG 124 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 A + E Y L EI +I+A G ++L + F +K N EN++ +EE Sbjct: 125 IDADSHCAEFYQLGLGEIEQIAASQGRGVTQLMEQVLAPFAEKMENAD----ENDRTSEE 180 Query: 184 SPKE-----NITSEGKSSV----------KNISKPLRIAVVGRPNVGKSTLINRLLGYNR 228 E + SE +++ + K ++IA+VGRPNVGKSTL NR+LG +R Sbjct: 181 EQDEWEQEFDFDSEEDTALIDDALDEEFEEEQDKNIKIAIVGRPNVGKSTLTNRILGEDR 240 Query: 229 LLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCET 288 ++ G TRDS+ I + DTAG+RK ++ ++E+ +V K++Q+++ Sbjct: 241 VVVFDMPGTTRDSIYIPMERDGQQYTLIDTAGVRKRGKVHLAVEKFSVIKTLQAIQDANV 300 Query: 289 TIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQI 348 ++ +DA QDL ++ + N G ++V+ +NKWD L QD++ + L + Sbjct: 301 VLLTIDARENISDQDLSLLGFILNAGRSLVIVVNKWD------GLDQDVKDRVKSELDRR 354 Query: 349 GDI----YINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIF 404 D ++ IS G G+ +L S+ E ++TTS L LQ ++ PP I Sbjct: 355 LDFIDFARVHFISALHGSGVGNLFDSIKEAYACATQKMTTSLLTRILQMATDEHQPPMIG 414 Query: 405 NRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 R +LKY +PP ++ +K+P+SYKRYL N R + + G PIR+ FQ Sbjct: 415 GRRIKLKYAHPGGYNPPIIVVHGNQMDKLPDSYKRYLSNYYRKSLKIIGSPIRLLFQEGS 474 Query: 465 NPY 467 NP+ Sbjct: 475 NPF 477 >gi|91225135|ref|ZP_01260357.1| GTP-binding protein EngA [Vibrio alginolyticus 12G01] gi|269965174|ref|ZP_06179308.1| GTP-binding protein [Vibrio alginolyticus 40B] gi|91190078|gb|EAS76349.1| GTP-binding protein EngA [Vibrio alginolyticus 12G01] gi|269830160|gb|EEZ84387.1| GTP-binding protein [Vibrio alginolyticus 40B] Length = 498 Score = 282 bits (721), Expect = 9e-74, Method: Compositional matrix adjust. Identities = 165/474 (34%), Positives = 260/474 (54%), Gaps = 10/474 (2%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVI-FNIVDTAG 59 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YGQA + F ++DT G Sbjct: 1 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQARLGEEHEFIVIDTGG 60 Query: 60 IADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 I DG + +M +Q+ AI+EA ++LFL+D +AG+TP D AI + LRK P ++V N Sbjct: 61 I-DGTEEGVETKMAEQSLAAIDEADVVLFLVDGRAGLTPSDEAIAAHLRKIEKPAMLVVN 119 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIE--- 176 K+D A + + L ++ +I+A H G + L F E E Sbjct: 120 KIDGIDADAACADFWQLGVDDMYQIAAAHGRGVTALLERALSPFFDDLLTSESEDGEIED 179 Query: 177 -NNKRNEESPKENITSE-GKSSVKNI-SKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGS 233 +EE E+ T E ++ K + +P+++A++GRPNVGKSTL NR+LG R++ Sbjct: 180 LTGFEDEEPLVEDYTEEDAEAEFKRLQEQPIKLAIIGRPNVGKSTLTNRILGEERVVVYD 239 Query: 234 QSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLL 293 G TRDS+ I + DTAG+R+ RI E++E+ +V K++++V ++++ Sbjct: 240 MPGTTRDSIYIPMERDGREYVLIDTAGVRRRGRINETVEKFSVVKTLKAVEDANVVLLVI 299 Query: 294 DATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYI 353 DA QDL ++ N G ++V+A+NKWD + + + ++ + + L + I Sbjct: 300 DARENISDQDLSLLGFALNAGRSIVIAVNKWDGLDSDVK--ESVKKELDRRLGFVDFARI 357 Query: 354 NTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYI 413 + IS G G+ L S+ E TR+ TS L ++ + PP + R +LKY Sbjct: 358 HFISALHGTGVGHLFESIQEAYNSATTRVGTSVLTRIMKMAVDDHQPPMVRGRRIKLKYA 417 Query: 414 TQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 +PP +I ++P+SYKRYL+N R + + G PIR+ F +S NPY Sbjct: 418 HAGGYNPPIVVIHGNMVRELPDSYKRYLMNYFRKSLEIMGTPIRINFHNSDNPY 471 >gi|149190086|ref|ZP_01868363.1| GTP-binding protein EngA [Vibrio shilonii AK1] gi|148836116|gb|EDL53076.1| GTP-binding protein EngA [Vibrio shilonii AK1] Length = 494 Score = 282 bits (721), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 166/472 (35%), Positives = 264/472 (55%), Gaps = 5/472 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YGQA + F ++DT GI Sbjct: 1 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGEHEFIVIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ AI+EA ++LFL+D +AG+T D AI LRK P +V NK Sbjct: 61 -DGTEEGVETKMAEQSLAAIDEADVVLFLVDGRAGLTSADEAIAQHLRKIEKPSFLVINK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNH-PLEMIENNK 179 +D A E + L +++ I+A H G + L F + + +E + + Sbjct: 120 VDGIDADAASAEFWQLGVEDMYHIAAAHGRGVTALIERALNPFAESFVEQGEIEDLTEFE 179 Query: 180 RNEESPKENITSEGKSSVKNI-SKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 EE + E + K + +P+++A++GRPNVGKSTL NR+LG R++ G T Sbjct: 180 DEEEEKLDYTEEEAEEEFKRLQDQPIKLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTT 239 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RDS+ I + + DTAG+R+ RI E++E+ +V K++++V ++++DA Sbjct: 240 RDSIYIPMQRDDREYVLIDTAGVRRRRRINETVEKFSVVKTLKAVEDANVVLLVIDAREN 299 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 QDL ++ N+G ++V+A+NKWD + ++ + ++ + + L + I+ IS Sbjct: 300 ISDQDLSLLGFALNSGRSIVIAVNKWDGLD--TDVKEHVKKELDRRLGFVDFARIHFISA 357 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 G G+ L SV E K TR+ TS L ++ + PP + R +LKY Sbjct: 358 LHGTGVGHLFESVQEAYKSATTRVGTSVLTRIMKMATEDHQPPMVRGRRVKLKYAHAGGY 417 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP ++ N++P+SYKRYL+N R + + G PIR+ FQSS NP+ K Sbjct: 418 NPPIVVVHGNLVNELPDSYKRYLMNYYRRSLEIMGTPIRINFQSSDNPFEGK 469 >gi|162454229|ref|YP_001616596.1| GTP-binding protein [Sorangium cellulosum 'So ce 56'] gi|161164811|emb|CAN96116.1| GTP-binding protein [Sorangium cellulosum 'So ce 56'] Length = 598 Score = 282 bits (721), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 158/466 (33%), Positives = 259/466 (55%), Gaps = 35/466 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PN GKSTLFNRLV K++A+V + PG+TRDR YG G F +VDT G Sbjct: 161 VALVGRPNTGKSTLFNRLVGKRVAIVHDEPGVTRDRHYGDVTSRGRRFTLVDTGGFDPES 220 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + + + Q +LAI EA +I+ ++D+ +TP +HA LR+ P+I V+NK D+ Sbjct: 221 DDPMRQGIKRQIDLAIAEADVIVCVLDAVTPVTPSEHAELGLLRRAGKPVIYVANKADSP 280 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 A+ E+Y L + ++ ISA H G S+L I + P P + Sbjct: 281 KAEVEAAELYRLGMERLIPISALHGRGISDLEMAI----EAALPEEPA-----------A 325 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P+E ++EG LRIA++GRPN GKS+L+NR+ G R+L + G TRD + Sbjct: 326 PEE--SAEGA---------LRIAIIGRPNAGKSSLVNRIAGEERMLVDATPGTTRDPIDT 374 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITE---SLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 + DTAG+R+ S++ + ++E +V +++++ E ++L DA + Sbjct: 375 LAERDGKRFLLIDTAGIRRKSKVAKEDSAVEAVSVIHAIRAMERAEVVLLLCDAAEGVAE 434 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVSDK--LNLLQDLRTKAIKNLPQIGDIYINTISGR 359 QD +I+ + G VV+ LNK D++ K QD R K + +P I +S R Sbjct: 435 QDAKILGLAVDRGCGVVIGLNKIDLLDRKALAKAEQDARDK-LSFVPW---APIAHVSAR 490 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 +G G+ L+ +V ++ ++ R+ T LN + ++ L +PPPT R RL ++TQ ++S Sbjct: 491 SGRGVAKLIETVAQVADAYRKRVPTGELNRFFEQILLTHPPPTHGGRAPRLFFVTQAETS 550 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 PP F++ + P+K+ SY+RY+ N+LR F+L G+P+R+ ++ + Sbjct: 551 PPLFVVVASDPDKLHFSYRRYVANQLRQAFALEGVPVRVKYKERRR 596 >gi|145635317|ref|ZP_01791020.1| GTP-binding protein EngA [Haemophilus influenzae PittAA] gi|145267461|gb|EDK07462.1| GTP-binding protein EngA [Haemophilus influenzae PittAA] Length = 504 Score = 282 bits (721), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 170/483 (35%), Positives = 268/483 (55%), Gaps = 31/483 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG A I G F ++DT GI DG Sbjct: 6 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHIAGYDFIVIDTGGI-DGT 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPI-IIVSNKMDT 123 + ++M +Q+ LAI+EA ++LFL+D++AG+T D I ++LR++ I ++V+NK D Sbjct: 65 EEGVEEKMAEQSLLAIDEADIVLFLVDARAGLTAADIGIANYLRQRQNKITVVVANKTDG 124 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 A + E Y L EI +I+A G ++L + F +K N EN++ +EE Sbjct: 125 IDADSHCAEFYQLGLGEIEQIAASQGRGVTQLMEQVLAPFAEKMENAD----ENDRTSEE 180 Query: 184 SPKE-----NITSEGKSSV----------KNISKPLRIAVVGRPNVGKSTLINRLLGYNR 228 E + SE +++ + K ++IA+VGRPNVGKSTL NR+LG +R Sbjct: 181 EQDEWEQEFDFDSEEDTALIDDALDEEFEEEQDKNIKIAIVGRPNVGKSTLTNRILGEDR 240 Query: 229 LLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCET 288 ++ G TRDS+ I + DTAG+RK ++ ++E+ +V K++Q+++ Sbjct: 241 VVVFDMPGTTRDSIYIPMERDGQQYTLIDTAGVRKRGKVHLAVEKFSVIKTLQAIQDANV 300 Query: 289 TIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQI 348 ++ +DA QDL ++ + N G ++V+ +NKWD L QD++ + L + Sbjct: 301 VLLTIDARENISDQDLSLLGFILNAGRSLVIVVNKWD------GLDQDVKDRVKSELDRR 354 Query: 349 GDI----YINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIF 404 D ++ IS G G+ +L S+ E ++TTS L LQ ++ PP I Sbjct: 355 LDFIDFARVHFISALHGSGVGNLFDSIKEAYACATQKMTTSLLTRILQMATDEHQPPMIG 414 Query: 405 NRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 R +LKY +PP ++ +K+P+SYKRYL N R + + G PIR+ FQ Sbjct: 415 GRRIKLKYAHPGGYNPPIIVVHGNQMDKLPDSYKRYLSNYYRKSLKIIGSPIRLLFQEGA 474 Query: 465 NPY 467 NP+ Sbjct: 475 NPF 477 >gi|170767411|ref|ZP_02901864.1| GTP-binding protein EngA [Escherichia albertii TW07627] gi|170123745|gb|EDS92676.1| GTP-binding protein EngA [Escherichia albertii TW07627] Length = 499 Score = 282 bits (721), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 168/472 (35%), Positives = 262/472 (55%), Gaps = 7/472 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A I G F +DT GI Sbjct: 10 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGI 69 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ LAI EA ++LF++D++AG+ P D AI LR + P +V+NK Sbjct: 70 -DGTEEGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANK 128 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGT-SELHSVIFKIFKQKYPNHPLEMIENNK 179 D + + YSL EI I+A H G S L V+ ++ P E+ E+ + Sbjct: 129 TDGLDPDQAVVDFYSLGLGEIYPIAASHGRGVLSLLERVLLPWMEELAPQE--EVDEDAE 186 Query: 180 R-NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 + +EN E + S P+++A+VGRPNVGKSTL NR+LG +R++ G T Sbjct: 187 YWAQFEAQENGEEEEEDDFDPQSLPIKLAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTT 246 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RDS+ I + DTAG+RK +IT+++E+ +V K++Q++ ++++DA Sbjct: 247 RDSIYIPMERDGREYVLIDTAGVRKRGKITDAVEKFSVIKTLQAIEDANVVMLVIDAREG 306 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 QDL ++ + N+G ++V+ +NKWD +S ++ + ++ L I ++ IS Sbjct: 307 ISDQDLSLLGFILNSGRSLVIVVNKWDGLSQEVK--EQVKETLDFRLGFIDFARVHFISA 364 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 G G+ +L SV E R+ TS L + + PP + R +LKY Sbjct: 365 LHGSGVGNLFESVREAYDSSTRRVGTSMLTRIMTMAVEDHQPPLVRGRRVKLKYAHAGGY 424 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I +P+SYKRYL+N R + + G PIR+ F+ +NPY K Sbjct: 425 NPPIVVIHGNQVKDLPDSYKRYLMNYFRKSLDVMGTPIRIQFKEGENPYANK 476 >gi|109899427|ref|YP_662682.1| GTP-binding protein EngA [Pseudoalteromonas atlantica T6c] gi|123170868|sp|Q15R60|DER_PSEA6 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|109701708|gb|ABG41628.1| small GTP-binding protein [Pseudoalteromonas atlantica T6c] Length = 482 Score = 282 bits (721), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 155/467 (33%), Positives = 263/467 (56%), Gaps = 11/467 (2%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YGQA G+ F +VDT GI Sbjct: 1 MLPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQANYEGLQFIVVDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + G I M +Q+ +AI+EA ++LFL+D++AG+T D I LRK+N + +V+NK Sbjct: 61 S-GDEQGIDMAMANQSLMAIDEADVVLFLVDARAGLTAADQGIAEHLRKQNKSVYVVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D + ++L ++ +I+A H G ++L + +++P+ + E Sbjct: 120 VDGIDGDSESADFFALGLGDVNQIAAAHGRGVTQLLTHTLMPLSEQFPDMQVPEDEEADE 179 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 ++ K+ K ++ P+++A+VG+PNVGKSTL NR+LG R++ Q G TRD Sbjct: 180 EIDAEKQ--------LEKLLASPIKLAIVGKPNVGKSTLTNRILGEERVVVYDQPGTTRD 231 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ I + + DTAG+R+ I+E++E+ ++ K++Q++ ++++DA Sbjct: 232 SIFIPMERDDREYVLIDTAGVRRRRSISEAVEKFSIVKTLQAIEEANVVLLVIDAQEGVT 291 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 QDL ++ V N+G ++V+A+NKWD ++ + +++ + + L I ++ IS Sbjct: 292 DQDLSLLGFVLNSGRSLVVAVNKWDGLAKDVK--DEIKRELDRRLGFIDFARLHYISALH 349 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G + L SV E RI TS L + Q + PP + R ++KY +P Sbjct: 350 GTNVGHLFESVQEAYNSATKRINTSMLTRIMDMAQADHQPPVVRGRRVKMKYAHAGGYNP 409 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 P +I +P+SYKRY++N R + + G PI++ F+ NP+ Sbjct: 410 PIIVIHGNQVKDLPDSYKRYMMNYFRKSLKVMGTPIKVEFREGANPF 456 >gi|222055249|ref|YP_002537611.1| small GTP-binding protein [Geobacter sp. FRC-32] gi|254783155|sp|B9M914|DER_GEOSF RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|221564538|gb|ACM20510.1| small GTP-binding protein [Geobacter sp. FRC-32] Length = 441 Score = 281 bits (720), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 161/465 (34%), Positives = 253/465 (54%), Gaps = 36/465 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTLFNRLV ++ A+V + PG+TRDR Y V F ++DT G Sbjct: 5 IAIVGRPNVGKSTLFNRLVGRRKAMVDDMPGVTRDRNYADVNRFDVPFILIDTGGFEPET 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + +QM +Q++LA++EA LILF++D + G+TP D + LR+ N P+ V NK+D Sbjct: 65 SDRLLQQMREQSQLAMDEADLILFVMDGRDGLTPADVEVVEMLRRVNKPVFYVVNKIDGD 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + YSL ++I ISAEH+ G ++L + PN ++ Sbjct: 125 RQENAAGDFYSLGIEQIFTISAEHNRGVNDLMEEVIAAL----PNKTAPAVD-------- 172 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 E +T RIAV+GRPNVGKSTL+NRLLG R++ G TRDS+ Sbjct: 173 --EEVT--------------RIAVIGRPNVGKSTLVNRLLGVERVVANPTPGTTRDSIDT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 +N + DTAG+R+ + TE +E+ +V S++S+ + ++++DA +QD Sbjct: 217 YFNCNKKRYLLIDTAGIRRKGKTTEKIEKYSVVDSLRSIERADVVLIVIDAEEGVTEQDT 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVS-DKLNL---LQDLRTKAIKNLPQIGDIYINTISGRT 360 +I F G + +NKWD +S D ++ ++ +R + K LP ++ +S +T Sbjct: 277 KIAGYAFEAGRGCIFVVNKWDAISKDNASMGIFVEKIRME-FKYLPFAPIVF---VSAKT 332 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G+ L +M V + + + RI+TS LN K ++ P R + + TQ+ + P Sbjct: 333 GQRLGKIMTEVDSVMEQFAKRISTSDLNRVFSKAVEEHHAPLYQGRRVKFYFATQVGTKP 392 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 PS +IF P+ + SY+RY+INR R F +G P+R+ F+ + Sbjct: 393 PSIVIFTNRPDGVHFSYERYIINRFRDAFGFTGTPMRLLFKGREG 437 >gi|262274783|ref|ZP_06052594.1| GTP-binding protein EngA [Grimontia hollisae CIP 101886] gi|262221346|gb|EEY72660.1| GTP-binding protein EngA [Grimontia hollisae CIP 101886] Length = 501 Score = 281 bits (720), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 160/480 (33%), Positives = 270/480 (56%), Gaps = 15/480 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A++ F +VDT GI Sbjct: 1 MIPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGKALLGEHEFIVVDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ AI EA ++LF++D +AG+T D AI LR + +V NK Sbjct: 61 -DGTEEGVETKMAEQSLAAIEEADVVLFMVDGRAGLTVADEAIAQHLRSRQKKTFLVVNK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLE-----MI 175 +D E + L +E+ +I+A H G L K F ++ + + ++ Sbjct: 120 VDGIDPDAASAEFWQLGMEEMYQIAAAHGRGVLALIDRALKPFAEELAGNEEDDGKEGLV 179 Query: 176 E-NNKRNEESPKENITSEGKSS----VKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLL 230 + +++E+ ++++T E S ++N+ P++ +++GRPNVGKSTL NR+LG R++ Sbjct: 180 DLTGEQDEDKDEKDLTEEDAESALERLRNL--PIKFSIIGRPNVGKSTLTNRILGEERVV 237 Query: 231 TGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTI 290 G TRDS+ I I DTAG+R+ R+ + +E+ +V ++++++ + Sbjct: 238 VYDMPGTTRDSIYIPMERDGREYVIIDTAGVRRRKRVNDKVEKFSVVQTLKAIEDANVVL 297 Query: 291 VLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGD 350 +++DA QDL ++ N G ++V+A+NKWD + ++ + ++++ + L + Sbjct: 298 LVIDARENISDQDLSLLGFALNAGRSIVIAVNKWDGLDS--DVKERVKSELDRRLGFVDF 355 Query: 351 IYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRL 410 I+ IS G G+ L S+ E + RI+TS L ++ Q + PP I R +L Sbjct: 356 ARIHFISALHGTGVGHLFESIQEAYESATRRISTSMLTRIMKMAQDDHQPPMIRGRRVKL 415 Query: 411 KYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 KY +PP +I ++P+SYKRYL+N R + + G PIR+ FQ+S+NP+ K Sbjct: 416 KYAHAGGYNPPIIVIHGNLVRELPDSYKRYLMNYYRKSLEIMGTPIRIQFQNSENPFEGK 475 >gi|292489043|ref|YP_003531930.1| GTP-binding protein engA [Erwinia amylovora CFBP1430] gi|292900172|ref|YP_003539541.1| GTP-binding protein [Erwinia amylovora ATCC 49946] gi|291200020|emb|CBJ47145.1| GTP-binding protein [Erwinia amylovora ATCC 49946] gi|291554477|emb|CBA22001.1| GTP-binding protein engA [Erwinia amylovora CFBP1430] Length = 499 Score = 281 bits (720), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 169/478 (35%), Positives = 260/478 (54%), Gaps = 11/478 (2%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A I G F +DT GI Sbjct: 1 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ LAI EA ++LF++D++AG+ P D AI LR + P IV+NK Sbjct: 61 -DGNEEGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADTAIAKHLRARQKPTFIVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLG-TSELHSVIFKIFKQKYPNHPLEMIENNK 179 D A + +SL EI I+A H G TS L V+ + P L E N+ Sbjct: 120 TDGLDADSAVVDFWSLGLGEIHPIAASHGRGVTSLLELVLLPWMDEVAPERELTEEEENE 179 Query: 180 -------RNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTG 232 E T++ + + P+++A+VGRPNVGKSTL NR+LG +R++ Sbjct: 180 AYWAELAAKEAKASGEDTADAEDDFNPLDLPIKLAIVGRPNVGKSTLTNRILGEDRVVVF 239 Query: 233 SQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVL 292 G TRDS+ I + DTAG+RK ++TE++E+ +V K+++++ +++ Sbjct: 240 DMPGTTRDSIYIPMERDGREYILIDTAGVRKRGKVTETVEKFSVIKTLKAIEDANVVMLV 299 Query: 293 LDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIY 352 +DA QDL ++ + N+G ++V+ +NKWD +S ++ +++ L I Sbjct: 300 IDAHEGISDQDLSLLGFILNSGRSLVIVVNKWDGLSQEVR--DEVKEALDYRLGFIDFAR 357 Query: 353 INTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKY 412 I+ IS G G+ +L SV E R+ TS L + + PP + +R +LKY Sbjct: 358 IHFISALHGSGVGNLFESVTEAYDCSTRRVNTSMLTRIMHMAADDHQPPLVRSRRVKLKY 417 Query: 413 ITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I +P+SYKRYL+N R + + G PIR+ F+ NPY K Sbjct: 418 AHAGGYNPPIVVIHGNQVKDLPDSYKRYLMNYFRRSLDIMGTPIRIQFKEGDNPYEGK 475 >gi|260424846|ref|ZP_05733464.2| ribosome-associated GTPase EngA [Dialister invisus DSM 15470] gi|260403366|gb|EEW96913.1| ribosome-associated GTPase EngA [Dialister invisus DSM 15470] Length = 454 Score = 281 bits (720), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 160/465 (34%), Positives = 253/465 (54%), Gaps = 36/465 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST+ N L +K++++V + PG+TRDR+Y F ++DT GI Sbjct: 18 VAIVGRPNVGKSTIINGLAQKRVSIVEDIPGVTRDRIYCDVRWLDREFTMIDTGGIEFRD 77 Query: 65 NCS-IAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 I+ + Q +LA+ EA +ILF++D++ G+ D I LR+ P+++ NK+D+ Sbjct: 78 EADQISDGIRQQAQLAMEEADVILFVVDARVGVQEDDQTIAGMLRRTGKPVVLCVNKVDS 137 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + YE YSL + + +SA + LG +L I + F Sbjct: 138 ENQKMDTYEFYSLGIGDPMPVSAVNHLGFGDLLDKISEGF-------------------- 177 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 P+E S +R A+VGRPNVGKSTLIN LLGY R L + G TRD+V Sbjct: 178 PPREEYDS---------PDIIRTAIVGRPNVGKSTLINSLLGYERSLVADEMGTTRDAVD 228 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 W +K + DTAGMRK +I E LE+ +V +S++++ C+ I +LDA +QD Sbjct: 229 SVWKYKGKTFILVDTAGMRKKGKIDEPLEKYSVIRSIRAIDNCDVAIFVLDANDMLTEQD 288 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNL---PQIGDIYINTISGRT 360 +I+ + G ++L +NKWDM+ + N + +L + L P I ++ + ++ + Sbjct: 289 KKIIGYIHEAGKGLILMVNKWDMIPKETNTMVELERQVRDGLPFAPYIPMLFGSALTKQR 348 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 + L D++ +V E + R++T+ LN L ++ NPPP R ++ Y+TQ+ P Sbjct: 349 IQRLGDMIYNVAEQQSM---RVSTAVLNDLLDDAKIVNPPPAHAGRVAKIYYMTQVGIRP 405 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 P+F++F N I SY R++ NRLR FS G PIR+ +S K+ Sbjct: 406 PTFVMFVNDANLIHFSYVRFIENRLRAAFSFEGTPIRIVLRSKKD 450 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 40/125 (32%), Positives = 65/125 (52%), Gaps = 6/125 (4%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 I AIVG PNVGKSTL N L+ + ++V + G TRD + G F +VDTAG+ Sbjct: 188 IIRTAIVGRPNVGKSTLINSLLGYERSLVADEMGTTRDAVDSVWKYKGKTFILVDTAGMR 247 Query: 62 DGKNCSIAKQMNDQTEL----AINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIV 117 K I + + + + AI+ + +F++D+ +T D I ++ + +I++ Sbjct: 248 --KKGKIDEPLEKYSVIRSIRAIDNCDVAIFVLDANDMLTEQDKKIIGYIHEAGKGLILM 305 Query: 118 SNKMD 122 NK D Sbjct: 306 VNKWD 310 >gi|148825596|ref|YP_001290349.1| GTP-binding protein EngA [Haemophilus influenzae PittEE] gi|229847254|ref|ZP_04467357.1| GTP-binding protein EngA [Haemophilus influenzae 7P49H1] gi|148715756|gb|ABQ97966.1| GTP-binding protein EngA [Haemophilus influenzae PittEE] gi|229809797|gb|EEP45520.1| GTP-binding protein EngA [Haemophilus influenzae 7P49H1] Length = 504 Score = 281 bits (720), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 168/484 (34%), Positives = 268/484 (55%), Gaps = 33/484 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG A I G F ++DT GI DG Sbjct: 6 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHIAGYDFIVIDTGGI-DGT 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPI-IIVSNKMDT 123 + ++M +Q+ LAI+EA ++LFL+D++AG+T D I ++LR++ I ++V+NK D Sbjct: 65 EEGVEEKMAEQSLLAIDEADIVLFLVDARAGLTAADIGIANYLRQRQNKITVLVANKTDG 124 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 A + E Y L EI +I+A G ++L + F +K +E ++ N R E Sbjct: 125 IDADSHCAEFYQLGLGEIEQIAASQGRGVTQLMEQVLAPFAEK-----MENVDENDRTSE 179 Query: 184 SPKE------NITSEGKSSV----------KNISKPLRIAVVGRPNVGKSTLINRLLGYN 227 ++ + SE +++ + K ++IA+VGRPNVGKSTL NR+LG + Sbjct: 180 EDQDEWEQEFDFDSEEDTALIDDALDEELEEEQDKNIKIAIVGRPNVGKSTLTNRILGED 239 Query: 228 RLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCE 287 R++ G TRDS+ I + DTAG+RK ++ ++E+ +V K++Q+++ Sbjct: 240 RVVVFDMPGTTRDSIYIPMERDGQQYTLIDTAGVRKRGKVHLAVEKFSVIKTLQAIQDAN 299 Query: 288 TTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQ 347 ++ +DA QDL ++ + N G ++V+ +NKWD L QD++ + L + Sbjct: 300 VVLLTIDARENISDQDLSLLGFILNAGRSLVIVVNKWD------GLDQDVKDRVKSELDR 353 Query: 348 IGDIY----INTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTI 403 D ++ IS G G+ +L S+ E ++TTS L LQ ++ PP I Sbjct: 354 RLDFIDFARVHFISALHGSGVGNLFDSIKEAYACATQKMTTSLLTRILQMATDEHQPPMI 413 Query: 404 FNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSS 463 R +LKY +PP ++ +K+P+SYKRYL N R + + G PIR+ FQ Sbjct: 414 GGRRIKLKYAHPGGYNPPIIVVHGNQMDKLPDSYKRYLSNYYRKSLKIIGSPIRLLFQEG 473 Query: 464 KNPY 467 NP+ Sbjct: 474 ANPF 477 >gi|317049132|ref|YP_004116780.1| ribosome-associated GTPase EngA [Pantoea sp. At-9b] gi|316950749|gb|ADU70224.1| ribosome-associated GTPase EngA [Pantoea sp. At-9b] Length = 496 Score = 281 bits (720), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 168/479 (35%), Positives = 260/479 (54%), Gaps = 16/479 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A + G F ++DT GI Sbjct: 1 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFIVIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ LAI EA ++LFL+D++AG+ P D I + LR + +V+NK Sbjct: 61 -DGTEEGVENRMAEQSLLAIEEADVVLFLVDARAGVMPADQQIANHLRSRQKATFLVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLG-TSELHSVIFKIFKQKYPNHPLEMIENNK 179 D + + Y+L EI I+A H G TS L + + + P E EN Sbjct: 120 TDGLDPEAAVLDFYALGLGEIHAIAASHGRGVTSLLETALLPWMDEVAPLEVSEEDENEA 179 Query: 180 R----NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQS 235 E E + E + + P+++A+VGRPNVGKSTL NR+LG +R++ Sbjct: 180 YWAALAAEENGEELEEEEEDDFDPTTLPIKLAIVGRPNVGKSTLTNRILGEDRVVVYDMP 239 Query: 236 GITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDA 295 G TRDS+ I + + DTAG+RK +IT+++E+ +V K++Q++ ++++DA Sbjct: 240 GTTRDSIYIPMERDDREYILIDTAGVRKRGKITDTVEKFSVIKTLQAIEDANVVMLVIDA 299 Query: 296 TIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVS----DKLNLLQDLRTKAIKNLPQIGDI 351 QDL ++ + N+G ++V+ +NKWD +S D++ D R L I Sbjct: 300 RAGISDQDLSLLGFILNSGRSLVIVVNKWDGLSQEVKDEVKETLDFR------LGFIDFA 353 Query: 352 YINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLK 411 ++ IS G G+ +L SV E R+ TS L + + PP + R +LK Sbjct: 354 RVHFISALHGSGVGNLFESVTEAYDCSTKRVNTSMLTRIMNMAAEDHQPPLVRGRRVKLK 413 Query: 412 YITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 Y +PP +I +P+SYKRYL+N R + ++ G PIR+ F+ NPY K Sbjct: 414 YAHAGGYNPPIVVIHGNQVKDLPDSYKRYLMNYFRRSLNVMGTPIRIQFKEGDNPYAGK 472 >gi|260891170|ref|ZP_05902433.1| ribosome-associated GTPase EngA [Leptotrichia hofstadii F0254] gi|260859197|gb|EEX73697.1| ribosome-associated GTPase EngA [Leptotrichia hofstadii F0254] Length = 441 Score = 281 bits (720), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 151/461 (32%), Positives = 250/461 (54%), Gaps = 30/461 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +T+AIVG PNVGKSTLFN+LV ++++V + PG+TRDRLY + +G F +VDT G+ Sbjct: 1 MKHTVAIVGRPNVGKSTLFNKLVGDRLSIVKDEPGVTRDRLYREMEWSGKEFILVDTGGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + ++ Q ++AI+EA +I+FL+D KAGIT D + + LR+++ +++ NK Sbjct: 61 EPRTEDFMMGKIKQQAQVAIDEADVIIFLVDGKAGITGLDEDVATVLRRQDKKVVVAVNK 120 Query: 121 MDTRI-AQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNK 179 +D + Q N +E Y L F+E++ IS EH +L + F+ K Sbjct: 121 IDNYMRDQENIFEFYGLGFEEVIGISGEHKTNLGDLLDAVINKFEDK------------- 167 Query: 180 RNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITR 239 +K + IA++GRPN GKS+L+N+LL R + +G TR Sbjct: 168 ----------------KIKQTENGINIAILGRPNAGKSSLVNKLLNEERSIVSDIAGTTR 211 Query: 240 DSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPF 299 D++ S + + DTAG+R+ S++ + +E +V +++++++ + +++LDAT Sbjct: 212 DTIDSSLKYNGETYTLIDTAGIRRKSKVDDDIEYYSVLRAIKAIKRADVCVLMLDATELL 271 Query: 300 EKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGR 359 QD RI ++ +++A+NKWD++ N +++ +L + I TIS Sbjct: 272 TDQDKRIAGMIYEERKPIIIAVNKWDLIEKNNNSVKEFTELVKADLAFLDYAPIVTISAL 331 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 TG+ +++ IN+ + +ITT LN L + QNP PT R ++ Y TQ+ + Sbjct: 332 TGKRTLNILEQAKFINEEYHKKITTGLLNQILAEMIAQNPVPTRKGRAVKINYATQVSQA 391 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCF 460 PP F F P I SY+RY+ N+LR F G PI + F Sbjct: 392 PPKFAFFANNPELIHFSYQRYIENKLREYFGFEGCPIDIVF 432 >gi|145640014|ref|ZP_01795612.1| GTP-binding protein EngA [Haemophilus influenzae PittII] gi|145270901|gb|EDK10820.1| GTP-binding protein EngA [Haemophilus influenzae PittII] Length = 504 Score = 281 bits (719), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 171/483 (35%), Positives = 268/483 (55%), Gaps = 31/483 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG A I G F ++DT GI DG Sbjct: 6 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHIAGYDFIVIDTGGI-DGT 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKK-NIPIIIVSNKMDT 123 + ++M +Q+ LAI+EA ++LFL+D++AG+T D I ++LR++ N I+V+NK D Sbjct: 65 EEGVEEKMAEQSLLAIDEADIVLFLVDARAGLTVADIGIANYLRQRQNKTTIVVANKTDG 124 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 A + E Y L EI +I+A G ++L + F +K N EN++ +EE Sbjct: 125 IDADSHCAEFYQLGLGEIEQIAASQGRGVTQLMEQVLAPFAEKMENAD----ENDRTSEE 180 Query: 184 SPKE-----NITSEGKSSV----------KNISKPLRIAVVGRPNVGKSTLINRLLGYNR 228 E + SE +++ + K ++IA+VGRPNVGKSTL NR+LG +R Sbjct: 181 EQDEWEQEFDFDSEEDTALIDDALDEELEEEQDKNIKIAIVGRPNVGKSTLTNRILGEDR 240 Query: 229 LLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCET 288 ++ G TRDS+ I + DTAG+RK ++ ++E+ +V K++Q+++ Sbjct: 241 VVVFDMPGTTRDSIYIPMERDGQQYTLIDTAGVRKRGKVHLAVEKFSVIKTLQAIQDANV 300 Query: 289 TIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQI 348 ++ +DA QDL ++ + N G ++V+ +NKWD L QD++ + L + Sbjct: 301 VLLTIDARENISDQDLSLLGFILNAGRSLVIVVNKWD------GLDQDVKDRVKSELDRR 354 Query: 349 GDIY----INTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIF 404 D ++ IS G G+ +L S+ E ++TTS L LQ ++ PP I Sbjct: 355 LDFIDFARVHFISALHGSGVGNLFDSIKEAYACATQKMTTSLLTRILQMATDEHQPPMIG 414 Query: 405 NRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 R +LKY +PP ++ +K+P+SYKRYL N R + + G PIR+ FQ Sbjct: 415 GRRIKLKYAHPGGYNPPIIVVHGNQMDKLPDSYKRYLSNYYRKSLKIIGSPIRLLFQEGS 474 Query: 465 NPY 467 NP+ Sbjct: 475 NPF 477 >gi|301024743|ref|ZP_07188383.1| ribosome-associated GTPase EngA [Escherichia coli MS 69-1] gi|300396412|gb|EFJ79950.1| ribosome-associated GTPase EngA [Escherichia coli MS 69-1] Length = 499 Score = 281 bits (719), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 171/476 (35%), Positives = 264/476 (55%), Gaps = 15/476 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A I G F +DT GI Sbjct: 10 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGI 69 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ LAI EA ++LF++D++AG+ P D AI LR + P +V+NK Sbjct: 70 -DGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANK 128 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGT-SELHSVIFKIFKQKYPNHPLEMIENNK 179 D + + YSL EI I+A H G S L V+ + P E+ E+ + Sbjct: 129 TDGLDPDQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHVLLPWMEDLAPQE--EVDEDAE 186 Query: 180 R-NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 + +EN E + S P+++A+VGRPNVGKSTL NR+LG R++ G T Sbjct: 187 YWAQFEAEENGEEEEEDDFDPQSLPIKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTT 246 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RDS+ I + DTAG+RK +IT+++E+ +V K++Q++ ++++DA Sbjct: 247 RDSIYIPMERDGREYVLIDTAGVRKRGKITDAVEKFSVIKTLQAIEDANVVMLVIDAREG 306 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLP-QIGDI---YIN 354 QDL ++ + N+G ++V+ +NKWD +S QD++ + + L ++G I ++ Sbjct: 307 ISDQDLSLLGFILNSGRSLVIVVNKWDGLS------QDVKEQVKETLDFRLGFIDFARVH 360 Query: 355 TISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYIT 414 IS G G+ +L SV E R+ TS L + + PP + R +LKY Sbjct: 361 FISALHGSGVGNLFESVREAYDSSTRRVGTSMLTRIMTMAVEDHQPPLVRGRRVKLKYAH 420 Query: 415 QIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I +P+SYKRYL+N R + + G PIR+ F+ +NPY K Sbjct: 421 AGGYNPPIVVIHGNQVKDLPDSYKRYLMNYFRKSLDVMGSPIRIQFKEGENPYANK 476 >gi|301168789|emb|CBW28380.1| predicted GTP-binding protein [Haemophilus influenzae 10810] Length = 503 Score = 281 bits (719), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 167/482 (34%), Positives = 263/482 (54%), Gaps = 30/482 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG A I G F ++DT GI DG Sbjct: 6 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHIAGYDFIVIDTGGI-DGT 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPI-IIVSNKMDT 123 + ++M +Q+ LAI+EA ++LFL+D++AG+T D I ++LR++ I ++V+NK D Sbjct: 65 EEGVEEKMAEQSLLAIDEADIVLFLVDARAGLTAADIGIANYLRQRQNKITVVVANKTDG 124 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR--- 180 A + E Y L EI +I+A G ++L + F +K N EN++ Sbjct: 125 IDADSHCAEFYQLGLGEIEQIAASQGRGVTQLMEQVLAPFAEKMENAD----ENDRTSEE 180 Query: 181 -----------NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRL 229 + E + + S + K ++IA+VGRPNVGKSTL NR+LG +R+ Sbjct: 181 EQDEWEQEFDFDSEEDTALLDEALEESEEEQDKNIKIAIVGRPNVGKSTLTNRILGEDRV 240 Query: 230 LTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETT 289 + G TRDS+ I + DTAG+RK ++ ++E+ +V K++Q+++ Sbjct: 241 VVFDMPGTTRDSIYIPMERDGQQYTLIDTAGVRKRGKVHLAVEKFSVIKTLQAIQDANVV 300 Query: 290 IVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIG 349 ++ +DA QDL ++ + N G ++V+ +NKWD L QD++ + L + Sbjct: 301 LLTIDARENISDQDLSLLGFILNAGRSLVIVVNKWD------GLDQDVKDRVKSELDRRL 354 Query: 350 DI----YINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFN 405 D ++ IS G G+ +L S+ E ++TTS L LQ ++ PP I Sbjct: 355 DFIDFARVHFISALHGSGVGNLFDSIKEAYACATQKMTTSLLTRILQMATDEHQPPMIGG 414 Query: 406 RYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 R +LKY +PP ++ +K+P+SYKRYL N R + + G PIR+ FQ N Sbjct: 415 RRIKLKYAHPGGYNPPIIVVHGNQMDKLPDSYKRYLSNYYRKSLKIIGSPIRLLFQEGSN 474 Query: 466 PY 467 P+ Sbjct: 475 PF 476 >gi|145641461|ref|ZP_01797039.1| GTP-binding protein EngA [Haemophilus influenzae R3021] gi|145273752|gb|EDK13620.1| GTP-binding protein EngA [Haemophilus influenzae 22.4-21] Length = 504 Score = 281 bits (719), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 171/483 (35%), Positives = 268/483 (55%), Gaps = 31/483 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG A I G F ++DT GI DG Sbjct: 6 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHIAGYDFIVIDTGGI-DGT 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKK-NIPIIIVSNKMDT 123 + ++M +Q+ LAI+EA ++LFL+D++AG+T D I ++LR++ N I+V+NK D Sbjct: 65 EEGVEEKMAEQSLLAIDEADIVLFLVDARAGLTVADIGIANYLRQRQNKTTIVVANKTDG 124 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 A + E Y L EI +I+A G ++L + F +K N EN++ +EE Sbjct: 125 IDADSHCAEFYQLGLGEIEQIAASQGRGVTQLMEQVLAPFAEKMENAD----ENDRTSEE 180 Query: 184 SPKE-----NITSEGKSSV----------KNISKPLRIAVVGRPNVGKSTLINRLLGYNR 228 E + SE +++ + K ++IA+VGRPNVGKSTL NR+LG +R Sbjct: 181 EQDEWEQEFDFDSEEDTALIDDALDEELEEEQDKNIKIAIVGRPNVGKSTLTNRILGEDR 240 Query: 229 LLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCET 288 ++ G TRDS+ I + DTAG+RK ++ ++E+ +V K++Q+++ Sbjct: 241 VVVFDMPGTTRDSIYIPMERDGQQYTLIDTAGVRKRGKVHLAVEKFSVIKTLQAIQDANV 300 Query: 289 TIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQI 348 ++ +DA QDL ++ + N G ++V+ +NKWD L QD++ + L + Sbjct: 301 VLLTIDARENISDQDLSLLGFILNAGRSLVIVVNKWD------GLDQDVKDRVKSELDRR 354 Query: 349 GDIY----INTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIF 404 D ++ IS G G+ +L S+ E ++TTS L LQ ++ PP I Sbjct: 355 LDFIDFARVHFISALHGSGVGNLFDSIKEAYACATQKMTTSLLTRILQMATDEHQPPMIG 414 Query: 405 NRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 R +LKY +PP ++ +K+P+SYKRYL N R + + G PIR+ FQ Sbjct: 415 GRRIKLKYAHPGGYNPPIIVVHGNQMDKLPDSYKRYLSNYYRKSLKIIGSPIRLLFQEGA 474 Query: 465 NPY 467 NP+ Sbjct: 475 NPF 477 >gi|39997323|ref|NP_953274.1| GTP-binding protein EngA [Geobacter sulfurreducens PCA] gi|81832003|sp|Q74AX4|DER_GEOSL RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|39984214|gb|AAR35601.1| GTP-binding protein Era, putative [Geobacter sulfurreducens PCA] gi|298506260|gb|ADI84983.1| GTPase EngA [Geobacter sulfurreducens KN400] Length = 438 Score = 281 bits (719), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 156/460 (33%), Positives = 245/460 (53%), Gaps = 28/460 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNRLV ++ A+V + PG+TRDR Y V F ++DT G Sbjct: 6 VAIVGRPNVGKSTLFNRLVGRRKAIVDDMPGVTRDRNYETVTRFDVPFILIDTGGFEPES 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + +QM +Q+ LA+ EA +ILFL+D +AG+ P D + LR+ + P+ V NK+D Sbjct: 66 SDRLLQQMREQSRLAMEEADVILFLMDGRAGLNPADVEVVEMLRRVDKPVFFVVNKVDGE 125 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + E YSL ++ ISAEH+ G +L + Q+ S Sbjct: 126 TLEVAASEFYSLGVDNLLTISAEHNRGVRDLMDEVVAALPQR---------------TTS 170 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P+E +N +K IAVVGRPNVGKS+L+NRLLGY R++ G TRDSV Sbjct: 171 PEE----------RNATK---IAVVGRPNVGKSSLVNRLLGYERVVANPTPGTTRDSVDT 217 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + DTAG+R+ + T+ +E+ +V S++S+ + +++L+A +QD Sbjct: 218 WFTCNKKRYLLIDTAGIRRKGKTTQKIEKYSVVDSLRSIERADVVLIVLNAEEGVTEQDE 277 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 RI F G A + +NKWD + + + K + + I +S +TG+ L Sbjct: 278 RIAGYAFEAGKACIFVVNKWDAIEKDNSSVGRFVDKIRTEFKYLAFVPIVFVSAKTGQRL 337 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 + +M V ++ + R+TTS LN + P + R + + TQ+ + PP+F+ Sbjct: 338 NRIMEEVEKVMAQYVKRVTTSELNRIFSAAVESHHHPLVMGRRVKFYFATQVGTRPPTFV 397 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 IF P+ + SY+RYL+N+ R F +G P+R+ F+ + Sbjct: 398 IFTNRPDGMHFSYERYLVNKFREAFDFTGTPLRLLFRGRE 437 >gi|229845438|ref|ZP_04465568.1| GTP-binding protein EngA [Haemophilus influenzae 6P18H1] gi|229811634|gb|EEP47333.1| GTP-binding protein EngA [Haemophilus influenzae 6P18H1] Length = 504 Score = 281 bits (719), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 170/483 (35%), Positives = 268/483 (55%), Gaps = 31/483 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG A I G F ++DT GI DG Sbjct: 6 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHIAGYDFIVIDTGGI-DGT 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPI-IIVSNKMDT 123 + ++M +Q+ LAI+EA ++LFL+D++AG+T D I ++LR++ I ++V+NK D Sbjct: 65 EEGVEEKMAEQSLLAIDEADIVLFLVDARAGLTAADIGIANYLRQRQNKITVVVANKTDG 124 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 A + E Y L EI +I+A G ++L + F +K N EN++ +EE Sbjct: 125 IDADSHCAEFYQLGLGEIEQIAASQGRGVTQLMEQVLAPFAEKMENAD----ENDRTSEE 180 Query: 184 SPKE-----NITSEGKSSV----------KNISKPLRIAVVGRPNVGKSTLINRLLGYNR 228 E + SE +++ + K ++IA+VGRPNVGKSTL NR+LG +R Sbjct: 181 EQDEWEQEFDFDSEEDTALIDDVLDEELEEEQDKNIKIAIVGRPNVGKSTLTNRILGEDR 240 Query: 229 LLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCET 288 ++ G TRDS+ I + DTAG+RK ++ ++E+ +V K++Q+++ Sbjct: 241 VVVFDMPGTTRDSIYIPMERDGQQYTLIDTAGVRKRGKVHLAVEKFSVIKTLQAIQDANV 300 Query: 289 TIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQI 348 ++ +DA QDL ++ + N G ++V+ +NKWD L QD++ + L + Sbjct: 301 VLLTIDARENISDQDLSLLGFILNAGRSLVIVVNKWD------GLDQDVKDRVKSELDRR 354 Query: 349 GDIY----INTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIF 404 D ++ IS G G+ +L S+ E ++TTS L LQ ++ PP I Sbjct: 355 LDFIDFARVHFISALHGSGVGNLFDSIKEAYACATQKMTTSLLTRILQMATDEHQPPMIG 414 Query: 405 NRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 R +LKY +PP ++ +K+P+SYKRYL N R + + G PIR+ FQ Sbjct: 415 GRRIKLKYAHPGGYNPPIIVVHGNQMDKLPDSYKRYLSNYYRKSLKIIGSPIRLLFQEGA 474 Query: 465 NPY 467 NP+ Sbjct: 475 NPF 477 >gi|16272103|ref|NP_438305.1| GTP-binding protein EngA [Haemophilus influenzae Rd KW20] gi|68248744|ref|YP_247856.1| GTP-binding protein EngA [Haemophilus influenzae 86-028NP] gi|260581297|ref|ZP_05849114.1| ribosome-associated GTPase EngA [Haemophilus influenzae RdAW] gi|1175159|sp|P44536|DER_HAEIN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|1573089|gb|AAC21807.1| GTP-binding protein [Haemophilus influenzae Rd KW20] gi|68056943|gb|AAX87196.1| GTP-binding protein EngA [Haemophilus influenzae 86-028NP] gi|260092046|gb|EEW75992.1| ribosome-associated GTPase EngA [Haemophilus influenzae RdAW] Length = 504 Score = 281 bits (719), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 170/483 (35%), Positives = 268/483 (55%), Gaps = 31/483 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG A I G F ++DT GI DG Sbjct: 6 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHIAGYDFIVIDTGGI-DGT 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPI-IIVSNKMDT 123 + ++M +Q+ LAI+EA ++LFL+D++AG+T D I ++LR++ I ++V+NK D Sbjct: 65 EEGVEEKMAEQSLLAIDEADIVLFLVDARAGLTAADIGIANYLRQRQNKITVVVANKTDG 124 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 A + E Y L EI +I+A G ++L + F +K N EN++ +EE Sbjct: 125 IDADSHCAEFYQLGLGEIEQIAASQGRGVTQLMEQVLAPFAEKMENAD----ENDRTSEE 180 Query: 184 SPKE-----NITSEGKSSV----------KNISKPLRIAVVGRPNVGKSTLINRLLGYNR 228 E + SE +++ + K ++IA+VGRPNVGKSTL NR+LG +R Sbjct: 181 EQDEWEQEFDFDSEEDTALIDDALDEELEEEQDKNIKIAIVGRPNVGKSTLTNRILGEDR 240 Query: 229 LLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCET 288 ++ G TRDS+ I + DTAG+RK ++ ++E+ +V K++Q+++ Sbjct: 241 VVVFDMPGTTRDSIYIPMERDGQQYTLIDTAGVRKRGKVHLAVEKFSVIKTLQAIQDANV 300 Query: 289 TIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQI 348 ++ +DA QDL ++ + N G ++V+ +NKWD L QD++ + L + Sbjct: 301 VLLTIDARENISDQDLSLLGFILNAGRSLVIVVNKWD------GLDQDVKDRVKSELDRR 354 Query: 349 GDIY----INTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIF 404 D ++ IS G G+ +L S+ E ++TTS L LQ ++ PP I Sbjct: 355 LDFIDFARVHFISALHGSGVGNLFDSIKEAYACATQKMTTSLLTRILQMATDEHQPPMIG 414 Query: 405 NRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 R +LKY +PP ++ +K+P+SYKRYL N R + + G PIR+ FQ Sbjct: 415 GRRIKLKYAHPGGYNPPIIVVHGNQMDKLPDSYKRYLSNYYRKSLKIIGSPIRLLFQEGS 474 Query: 465 NPY 467 NP+ Sbjct: 475 NPF 477 >gi|238794826|ref|ZP_04638427.1| GTP-binding protein engA [Yersinia intermedia ATCC 29909] gi|238725839|gb|EEQ17392.1| GTP-binding protein engA [Yersinia intermedia ATCC 29909] Length = 495 Score = 281 bits (719), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 165/479 (34%), Positives = 260/479 (54%), Gaps = 16/479 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI IA+VG PNVGKSTLFNRL + A+V + PG+TRDR YG+A + G F ++DT GI Sbjct: 1 MIPVIALVGRPNVGKSTLFNRLTHTRDALVADFPGLTRDRKYGRAEVEGHEFIVIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M Q+ LAI EA ++LF++D++AG+ P D I LR + +V+NK Sbjct: 61 -DGTEDGVETKMAGQSLLAIEEADIVLFMVDARAGLMPADQGIAQHLRSREKATFLVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL-HSVIFKIFKQKYPNHPLEMIENNK 179 D + YSL E+ I+A H G ++L V+ P L E N Sbjct: 120 TDGIDPDTATADFYSLGLGEVHAIAASHGRGVTQLIEDVMAPYMDAVEPEVELTDEEANA 179 Query: 180 R---NEESPKENI-TSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQS 235 +E+ + + + + + P+++A+VGRPNVGKSTL NR+LG +R++ Sbjct: 180 AYWAAQEAEDDAVPEDDAEDDFDPRTLPIKLAIVGRPNVGKSTLTNRILGEDRVVVYDMP 239 Query: 236 GITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDA 295 G TRDS+ I + DTAG+RK +ITE++E+ +V K++Q++ ++++DA Sbjct: 240 GTTRDSIYIPMTRDEREYILIDTAGVRKRGKITETVEKFSVIKTLQAIEDSNVVLLVIDA 299 Query: 296 TIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSD----KLNLLQDLRTKAIKNLPQIGDI 351 QDL ++ + N+G ++V+A+NKWD +++ ++ + DLR L + Sbjct: 300 RDGISDQDLSLLGFILNSGRSLVIAVNKWDGMTEEARAQVKDMLDLR------LGFVDFA 353 Query: 352 YINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLK 411 I+ IS G G+ +L S+ E R+ TS L +Q + + PP + R +LK Sbjct: 354 RIHFISALHGSGVGNLFESIQEAYDCSTKRVGTSLLTRIMQMAEEDHQPPLVRGRRVKLK 413 Query: 412 YITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 Y +PP +I + +SYKRYL+N R + + G PIR+ F+ +NP+ K Sbjct: 414 YAHAGGYNPPIVVIHGNQVTDLSDSYKRYLMNYFRRSLKVMGTPIRIQFKEGENPFAGK 472 >gi|310778034|ref|YP_003966367.1| ribosome-associated GTPase EngA [Ilyobacter polytropus DSM 2926] gi|309747357|gb|ADO82019.1| ribosome-associated GTPase EngA [Ilyobacter polytropus DSM 2926] Length = 439 Score = 281 bits (719), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 153/458 (33%), Positives = 254/458 (55%), Gaps = 29/458 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFN+LV ++A+V + PG+TRDRLY + G F IVDT G+ Sbjct: 5 VAIVGRPNVGKSTLFNKLVGDRIAIVDDQPGVTRDRLYRETDWLGTEFVIVDTGGLEPRN 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + ++ Q E+AINEA +ILF++D KAG+T D + LRKKN P+I+ NK+D Sbjct: 65 KDFMMTKIKQQAEVAINEADVILFVVDGKAGVTALDEEVAYILRKKNKPVILCVNKVDNF 124 Query: 125 IAQRN-FYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 Q + Y+ +SL F+ ++ ISAEH L ++ I + Q Sbjct: 125 QRQSDDVYDFWSLGFEFLLPISAEHKLNLGDMLDTIVQNINQL----------------- 167 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 + + L++A++G+PN GKS+L+NRL G R + +G TRD++ Sbjct: 168 -----------ELPEEEEEGLKLAIIGKPNAGKSSLVNRLSGKERAIVSDIAGTTRDAID 216 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 ++ + + + DTAG+R+ S++ ESLE +V +++++++ + +++LDA +QD Sbjct: 217 TTFEYNYNKYILIDTAGIRRKSKVEESLEYYSVLRAIKTIKRSDVCMLMLDAQEGITEQD 276 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 +I ++ +++ +NKWD + + N ++D++ + LP + + +S TG+ Sbjct: 277 KKIAGIAYDEKKPIIVVMNKWDALKKETNTMKDMKALILSELPFLNYAPVEFVSALTGQR 336 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 L+ + + RI+T LN+ L++ + N PPT R ++ Y TQI ++PP F Sbjct: 337 TLKLLDLADTVYDEYTKRISTGILNTVLKEALILNAPPTRKGRLVKINYATQISTAPPRF 396 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 ++FC +P+ I SY RYL N+ R F G PI + Q Sbjct: 397 VLFCNYPDLIHFSYLRYLENKFRDAFGFEGSPIDIILQ 434 >gi|293394879|ref|ZP_06639169.1| ribosome-associated GTPase EngA [Serratia odorifera DSM 4582] gi|291422630|gb|EFE95869.1| ribosome-associated GTPase EngA [Serratia odorifera DSM 4582] Length = 497 Score = 281 bits (718), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 167/485 (34%), Positives = 263/485 (54%), Gaps = 27/485 (5%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI +A+VG PNVGKSTLFNRL + A+V + PG+TRDR YG+A + G F I+DT GI Sbjct: 1 MIPVVALVGRPNVGKSTLFNRLTHTRDALVADFPGLTRDRKYGRAEVEGNEFIIIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M Q+ LAI EA ++LF++D++AG+ P D I LR + +V+NK Sbjct: 61 -DGTEDGVETRMAGQSLLAIEEADIVLFMVDARAGLMPADQGIAQHLRSRRKATFLVANK 119 Query: 121 ---MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL-HSVIFKIFKQKYPNHPLEMIE 176 MD +A +F+ SL ++ I+A H G ++L V+ +K +E+ E Sbjct: 120 TDGMDPDLATADFF---SLGLGDVHPIAASHGRGVAQLIEHVLVPFLPEK--EQEVELTE 174 Query: 177 NN-------KRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRL 229 ++ E E + E + P+++A+VGRPNVGKSTL NR+LG R+ Sbjct: 175 EQANAAYWAEQQGELSDEALAEEPEDDFNPQDLPIKLAIVGRPNVGKSTLTNRILGEERV 234 Query: 230 LTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETT 289 + G TRDS+ I + DTAG+RK ++TE++E+ +V K++Q++ Sbjct: 235 VVYDMPGTTRDSIYIPMVRDEREYVLIDTAGVRKRGKVTETVEKFSVIKTLQAIEDANVV 294 Query: 290 IVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVS----DKLNLLQDLRTKAIKNL 345 ++++DA QDL ++ + N+G ++V+A+NKWD +S D + + DLR L Sbjct: 295 LLVVDAREGISDQDLSLLGFILNSGRSLVIAVNKWDGMSEEDRDHVKEMLDLR------L 348 Query: 346 PQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFN 405 + ++ IS G G+ +L SV E + R+ TS L + + PP + Sbjct: 349 GFVDFARVHFISALHGSGVGNLFESVQEAYECATRRVNTSMLTKIMNMAAEDHQPPLVRG 408 Query: 406 RYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 R +LKY +PP +I + +SYKRYL+N R + ++ G PIR+ F+ +N Sbjct: 409 RRVKLKYAHAGGYNPPIVVIHGNQVADLSDSYKRYLMNYFRRSLNVMGTPIRIQFKEGEN 468 Query: 466 PYIKK 470 P+ K Sbjct: 469 PFAGK 473 >gi|187731692|ref|YP_001881302.1| GTP-binding protein EngA [Shigella boydii CDC 3083-94] gi|238691721|sp|B2TXT6|DER_SHIB3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|187428684|gb|ACD07958.1| ribosome-associated GTPase EngA [Shigella boydii CDC 3083-94] Length = 490 Score = 281 bits (718), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 168/472 (35%), Positives = 261/472 (55%), Gaps = 7/472 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A I G F +DT GI Sbjct: 1 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ LAI EA ++LF++D++AG+ P D AI LR + P +V+NK Sbjct: 61 -DGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGT-SELHSVIFKIFKQKYPNHPLEMIENNK 179 +D + + YSL EI I+A H G S L V+ + P E+ E+ + Sbjct: 120 IDGLDPDQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHVLLPWMEDLAPQE--EVDEDAE 177 Query: 180 R-NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 + +EN E + S P+++A+VGRPNVGKSTL NR+LG R++ G T Sbjct: 178 YWAQFEAEENGEEEEEDDFDPQSLPIKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTT 237 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RDS+ I + DTAG+RK +IT+++E+ +V K++Q++ ++++DA Sbjct: 238 RDSIYIPMERDGREYVLIDTAGVRKRGKITDAVEKFSVIKTLQAIEDANVVMLVIDAREG 297 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 QDL ++ + N+G ++V+ +NKWD +S ++ + ++ L I ++ IS Sbjct: 298 ISDQDLSLLGFILNSGRSLVIVVNKWDGLSQEVK--EQVKETLDFRLGFIDFARVHFISA 355 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 G G+ +L SV E R+ TS L + + PP + R +LKY Sbjct: 356 LHGSGVGNLFESVREAYDSSTRRVGTSMLTRIMTMAVEDHQPPLVRGRRVKLKYAHAGGY 415 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I +P+SYKRYL+N R + + G PIR+ F+ +NPY K Sbjct: 416 NPPIVVIHGNQVKDLPDSYKRYLMNYFRKSLDVMGSPIRIQFKEGENPYANK 467 >gi|146312646|ref|YP_001177720.1| GTP-binding protein EngA [Enterobacter sp. 638] gi|166920100|sp|A4WD89|DER_ENT38 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|145319522|gb|ABP61669.1| small GTP-binding protein [Enterobacter sp. 638] Length = 490 Score = 281 bits (718), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 163/478 (34%), Positives = 261/478 (54%), Gaps = 19/478 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A + G F +DT GI Sbjct: 1 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ LAI EA ++LF++D++AG+ P D AI LR + P +V+NK Sbjct: 61 -DGTEDGVETRMAEQSLLAIEEADIVLFMVDARAGLMPADTAIAKHLRSREKPTFLVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLG-TSELHSVIFKIFKQKYPNHPLE------ 173 D A + + ++L EI I+A H G TS L +V+ + P ++ Sbjct: 120 TDGIDADQAVADFWALGLGEIYPIAASHGRGVTSLLETVLMPWVDEINPPEEIDEDAAYW 179 Query: 174 -MIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTG 232 E +E P ++ + P+++A+VGRPNVGKSTL NR+LG +R++ Sbjct: 180 AQFEEAVEGKEEPVDDFNPQ--------DLPIKLAIVGRPNVGKSTLTNRILGEDRVVVY 231 Query: 233 SQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVL 292 G TRDS+ I + DTAG+RK +IT+ +E+ +V K++Q++ +++ Sbjct: 232 DMPGTTRDSIYIPMQRDEREYVLIDTAGVRKRGKITDVVEKFSVIKTLQAIEDANVVMLV 291 Query: 293 LDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIY 352 +DA QDL ++ + N+G ++V+ +NKWD +S+ ++ + ++ L I Sbjct: 292 IDAREGISDQDLSLLGFILNSGRSLVIVVNKWDGLSN--DVREQVKEMLDFRLGFIDFAR 349 Query: 353 INTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKY 412 I+ IS G G+ +L SV E R +T+ L + + PP + R +LKY Sbjct: 350 IHFISALHGSGVGNLFESVREAYDSSTRRQSTAMLTRIMTMASEDHQPPLVRGRRVKLKY 409 Query: 413 ITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I +P+SYKRYL+N R + + G PIR+ F+ +NP+ K Sbjct: 410 AHAGGYNPPIVVIHGNQVKDLPDSYKRYLMNYFRKSLDVMGTPIRIQFKEGENPFADK 467 >gi|15601970|ref|NP_245042.1| GTP-binding protein EngA [Pasteurella multocida subsp. multocida str. Pm70] gi|13431507|sp|P57812|DER_PASMU RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|12720316|gb|AAK02189.1| unknown [Pasteurella multocida subsp. multocida str. Pm70] Length = 510 Score = 281 bits (718), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 168/488 (34%), Positives = 266/488 (54%), Gaps = 29/488 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YGQA I G F ++DT GI DG Sbjct: 6 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQANIAGYDFIVIDTGGI-DGT 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPI-IIVSNKMDT 123 + ++M +Q+ LAI EA ++LFL+D++AG+T D I ++LR++ I ++V+NK D Sbjct: 65 EEGVEEKMAEQSLLAIEEADVVLFLVDARAGLTSADIGIANYLRQRQNKITVVVANKTDG 124 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEM--IENNKRN 181 A + E Y L E+ +I+A G S L + +K E +EN + Sbjct: 125 IDADSHCAEFYQLGLGEVEQIAASQGRGVSALMEQVLAPIAEKMNAESPEQSAVENTDVS 184 Query: 182 EESPKEN-------------------ITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINR 222 E ++ I E ++ KNI +IA+VGRPNVGKSTL NR Sbjct: 185 ETGEQDEWDHDFDFANEEDTALLDDAIAEELEAQDKNI----KIAIVGRPNVGKSTLTNR 240 Query: 223 LLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQS 282 +LG +R++ G TRDS+ I I DTAG+RK ++ ++E+ +V K++Q+ Sbjct: 241 ILGEDRVVVYDLPGTTRDSIYIPMERDGQHYTIIDTAGVRKRGKVHLAVEKFSVIKTLQA 300 Query: 283 VRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAI 342 ++ ++ +DA QDL ++ + N G ++V+ +NKWD ++ ++ ++++ Sbjct: 301 IQDANVVLLTIDAREGVSDQDLSLLGFILNAGRSLVIVVNKWDGLNQ--DIKDQVKSELD 358 Query: 343 KNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPT 402 + L I ++ IS G G+ +L S+ E ++TTS L LQ ++ PP Sbjct: 359 RRLDFIDFARVHFISALHGSGVGNLFDSIQEAYACATQKMTTSMLTRILQMATDEHQPPM 418 Query: 403 IFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 + R +LKY +PP ++ +K+P+SYKRYL N R + + G PIR+ FQ Sbjct: 419 MGGRRIKLKYAHPGGYNPPIIVVHGNQMDKLPDSYKRYLSNYYRRSLKIIGSPIRLLFQE 478 Query: 463 SKNPYIKK 470 NP+ K Sbjct: 479 GNNPFAGK 486 >gi|157961137|ref|YP_001501171.1| GTP-binding protein EngA [Shewanella pealeana ATCC 700345] gi|189037162|sp|A8H249|DER_SHEPA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|157846137|gb|ABV86636.1| small GTP-binding protein [Shewanella pealeana ATCC 700345] Length = 490 Score = 281 bits (718), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 163/474 (34%), Positives = 264/474 (55%), Gaps = 20/474 (4%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A + G F +VDT GI Sbjct: 1 MIPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAHLAGYEFIVVDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG I +M +Q+ AI EA ++LFL D++AG+T D AI LR + +V+NK Sbjct: 61 -DGTEEGIETRMAEQSLAAIEEADVVLFLTDARAGLTAADLAIAQHLRSREKTTFVVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL-------HSVIFKIFKQKYPNHPLE 173 +D A E +SL E+ +++A G + + ++ I KQ+ + E Sbjct: 120 VDGIDADSACAEFWSLGLGEVYQMAAAQGRGVTNMIEYSLAPYAEAMGIVKQEDGDDDEE 179 Query: 174 MIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGS 233 E + E+ ++ + P+++A++G+PNVGKSTL NR+LG R++ Sbjct: 180 EREYTEEQAEAEQKRLQD----------LPIKLAIIGKPNVGKSTLTNRILGEERVVVYD 229 Query: 234 QSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLL 293 + G TRDS+ I + + DTAG+R+ S++ E++E+ +V K++++V ++++ Sbjct: 230 EPGTTRDSIYIPMERQGREYVLIDTAGVRRRSKVHETVEKFSVIKTLKAVEDSNVVLLVI 289 Query: 294 DATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYI 353 DA +QDL ++ V N G A+V+A+NKWD + N+ ++T+ + L I I Sbjct: 290 DAREGIAEQDLGLLGFVLNAGRALVIAINKWDGIDQ--NIKDRVKTELDRRLGFIDFARI 347 Query: 354 NTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYI 413 + IS G G+ L S+ E R++TS L +Q +Q + PP + R +LKY Sbjct: 348 HFISALHGTGVGHLFESIEEAYDSATRRVSTSMLTRIMQMSQDDHQPPLVNGRRVKLKYA 407 Query: 414 TQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 +PP ++ K+P+SYKRY++N R + + G PI++ FQ NP+ Sbjct: 408 HAGGYNPPIVVVHGNQVKKLPDSYKRYMMNYFRRSLKVIGTPIQLRFQEGGNPF 461 >gi|218548052|ref|YP_002381843.1| GTP-binding protein EngA [Escherichia fergusonii ATCC 35469] gi|331684159|ref|ZP_08384755.1| ribosome-associated GTPase EngA [Escherichia coli H299] gi|226741141|sp|B7LKC7|DER_ESCF3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|218355593|emb|CAQ88204.1| GTPase involved in ribosome synthesis and maintenance [Escherichia fergusonii ATCC 35469] gi|323967959|gb|EGB63371.1| ribosome GTPase EngA [Escherichia coli M863] gi|327252218|gb|EGE63890.1| small GTP-binding domain protein [Escherichia coli STEC_7v] gi|331079111|gb|EGI50313.1| ribosome-associated GTPase EngA [Escherichia coli H299] Length = 490 Score = 281 bits (718), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 168/472 (35%), Positives = 260/472 (55%), Gaps = 7/472 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A I G F +DT GI Sbjct: 1 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ LAI EA ++LF++D++AG+ P D AI LR + P +V+NK Sbjct: 61 -DGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGT-SELHSVIFKIFKQKYPNHPLEMIENNK 179 D + + YSL EI I+A H G S L V+ + P E+ E+ + Sbjct: 120 TDGLDPDQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHVLLPWMEDLAPQE--EVDEDAE 177 Query: 180 R-NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 + +EN E + S P+++A+VGRPNVGKSTL NR+LG R++ G T Sbjct: 178 YWAQFEAEENGEEEEEDDFDPQSLPIKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTT 237 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RDS+ I + DTAG+RK +IT+++E+ +V K++Q++ ++++DA Sbjct: 238 RDSIYIPMERDGREYVLIDTAGVRKRGKITDAVEKFSVIKTLQAIEDANVVMLVIDAREG 297 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 QDL ++ + N+G ++V+ +NKWD +S ++ + ++ L I ++ IS Sbjct: 298 ISDQDLSLLGFILNSGRSLVIVVNKWDGLSQEVK--EQVKETLDFRLGFIDFARVHFISA 355 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 G G+ +L SV E R+ TS L + + PP + R +LKY Sbjct: 356 LHGSGVGNLFESVREAYDSSTRRVGTSMLTRIMTMAVEDHQPPLVRGRRVKLKYAHAGGY 415 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I +P+SYKRYL+N R + + G PIR+ F+ +NPY K Sbjct: 416 NPPIVVIHGNQVKDLPDSYKRYLMNYFRKSLDVMGTPIRIQFKEGENPYANK 467 >gi|325496456|gb|EGC94315.1| putative GTP-binding factor [Escherichia fergusonii ECD227] Length = 499 Score = 280 bits (717), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 168/472 (35%), Positives = 260/472 (55%), Gaps = 7/472 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A I G F +DT GI Sbjct: 10 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGI 69 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ LAI EA ++LF++D++AG+ P D AI LR + P +V+NK Sbjct: 70 -DGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANK 128 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGT-SELHSVIFKIFKQKYPNHPLEMIENNK 179 D + + YSL EI I+A H G S L V+ + P E+ E+ + Sbjct: 129 TDGLDPDQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHVLLPWMEDLAPQE--EVDEDAE 186 Query: 180 R-NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 + +EN E + S P+++A+VGRPNVGKSTL NR+LG R++ G T Sbjct: 187 YWAQFEAEENGEEEEEDDFDPQSLPIKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTT 246 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RDS+ I + DTAG+RK +IT+++E+ +V K++Q++ ++++DA Sbjct: 247 RDSIYIPMERDGREYVLIDTAGVRKRGKITDAVEKFSVIKTLQAIEDANVVMLVIDAREG 306 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 QDL ++ + N+G ++V+ +NKWD +S ++ + ++ L I ++ IS Sbjct: 307 ISDQDLSLLGFILNSGRSLVIVVNKWDGLSQEVK--EQVKETLDFRLGFIDFARVHFISA 364 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 G G+ +L SV E R+ TS L + + PP + R +LKY Sbjct: 365 LHGSGVGNLFESVREAYDSSTRRVGTSMLTRIMTMAVEDHQPPLVRGRRVKLKYAHAGGY 424 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I +P+SYKRYL+N R + + G PIR+ F+ +NPY K Sbjct: 425 NPPIVVIHGNQVKDLPDSYKRYLMNYFRKSLDVMGTPIRIQFKEGENPYANK 476 >gi|324113005|gb|EGC06981.1| ribosome GTPase EngA [Escherichia fergusonii B253] Length = 490 Score = 280 bits (717), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 168/472 (35%), Positives = 260/472 (55%), Gaps = 7/472 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A I G F +DT GI Sbjct: 1 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ LAI EA ++LF++D++AG+ P D AI LR + P +V+NK Sbjct: 61 -DGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGT-SELHSVIFKIFKQKYPNHPLEMIENNK 179 D + + YSL EI I+A H G S L V+ + P E+ E+ + Sbjct: 120 TDGLDPDQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHVLLPWMEDLTPQE--EVDEDAE 177 Query: 180 R-NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 + +EN E + S P+++A+VGRPNVGKSTL NR+LG R++ G T Sbjct: 178 YWAQFEAEENGEEEEEDDFDPQSLPIKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTT 237 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RDS+ I + DTAG+RK +IT+++E+ +V K++Q++ ++++DA Sbjct: 238 RDSIYIPMERDGREYVLIDTAGVRKRGKITDAVEKFSVIKTLQAIEDANVVMLVIDAREG 297 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 QDL ++ + N+G ++V+ +NKWD +S ++ + ++ L I ++ IS Sbjct: 298 ISDQDLSLLGFILNSGRSLVIVVNKWDGLSQEVK--EQVKETLDFRLGFIDFARVHFISA 355 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 G G+ +L SV E R+ TS L + + PP + R +LKY Sbjct: 356 LHGSGVGNLFESVREAYDSSTRRVGTSMLTRIMTMAVEDHQPPLVRGRRVKLKYAHAGGY 415 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I +P+SYKRYL+N R + + G PIR+ F+ +NPY K Sbjct: 416 NPPIVVIHGNQVKDLPDSYKRYLMNYFRKSLDVMGTPIRIQFKEGENPYANK 467 >gi|332087958|gb|EGI93083.1| small GTP-binding domain protein [Shigella boydii 5216-82] Length = 490 Score = 280 bits (717), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 168/472 (35%), Positives = 260/472 (55%), Gaps = 7/472 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A I G F +DT GI Sbjct: 1 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ LAI EA ++LF++D++AG+ P D AI LR + P +V+NK Sbjct: 61 -DGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGT-SELHSVIFKIFKQKYPNHPLEMIENNK 179 D + + YSL EI I+A H G S L V+ + P E+ E+ + Sbjct: 120 TDGLDPDQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHVLLPWMEDLAPQE--EVDEDAE 177 Query: 180 R-NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 + +EN E + S P+++A+VGRPNVGKSTL NR+LG R++ G T Sbjct: 178 YWAQFEAEENGEEEEEDDFDPQSLPIKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTT 237 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RDS+ I + DTAG+RK +IT+++E+ +V K++Q++ ++++DA Sbjct: 238 RDSIYIPMERDGREYVLIDTAGVRKRGKITDAVEKFSVIKTLQAIEDANVVMLVIDAREG 297 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 QDL ++ + N+G ++V+ +NKWD +S ++ + ++ L I ++ IS Sbjct: 298 ISDQDLSLLGFILNSGRSLVIVVNKWDGLSQEVK--EQVKETLDFRLGFIDFARVHFISA 355 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 G G+ +L SV E R+ TS L + + PP + R +LKY Sbjct: 356 LHGSGVGNLFESVREAYDSSTRRVGTSMLTRIMTMAVEDHQPPLVRGRRVKLKYAHAGGY 415 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I +P+SYKRYL+N R + + G PIR+ F+ +NPY K Sbjct: 416 NPPIVVIHGNQVKDLPDSYKRYLMNYFRKSLDVMGAPIRIQFKEGENPYANK 467 >gi|145628971|ref|ZP_01784770.1| GTP-binding protein EngA [Haemophilus influenzae 22.1-21] gi|144978474|gb|EDJ88197.1| GTP-binding protein EngA [Haemophilus influenzae 22.1-21] Length = 504 Score = 280 bits (717), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 170/483 (35%), Positives = 269/483 (55%), Gaps = 31/483 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG A I G F ++DT GI DG Sbjct: 6 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHIVGYDFIVIDTGGI-DGT 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPI-IIVSNKMDT 123 + ++M +Q+ LAI+EA ++LFL+D++AG+T D I ++LR++ I ++V+NK D Sbjct: 65 EEGVEEKMAEQSLLAIDEADIVLFLVDARAGLTAADIGIANYLRQRQNKITVVVANKTDG 124 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 A + E Y L EI +I+A G ++L + F ++ N + ENN+ +EE Sbjct: 125 IDADSHCAEFYQLGLGEIEQIAASQGRGVTQLMEQVLAPFAEQMEN----VDENNRTSEE 180 Query: 184 SPKE-----NITSEGKSSV----------KNISKPLRIAVVGRPNVGKSTLINRLLGYNR 228 E + SE +++ + K ++IA+VGRPNVGKSTL NR+LG +R Sbjct: 181 EQDEWEQEFDFDSEEDTALIDEALDEELEEEQDKNIKIAIVGRPNVGKSTLTNRILGEDR 240 Query: 229 LLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCET 288 ++ G TRDS+ I + DTAG+RK ++ ++E+ +V K++Q+++ Sbjct: 241 VVVYDMPGTTRDSIYIPMERDGQQYTLIDTAGVRKRGKVHLAVEKFSVIKTLQAIQDANV 300 Query: 289 TIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQI 348 ++ +DA QDL ++ + N G ++V+ +NKWD L QD++ + L + Sbjct: 301 VLLTIDARENISDQDLSLLGFILNAGRSLVIVVNKWD------GLDQDVKDRVKSELDRR 354 Query: 349 GDIY----INTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIF 404 D ++ IS G G+ +L S+ E ++TTS L LQ ++ PP I Sbjct: 355 LDFIDFARVHFISALHGSGVGNLFDSIKEAYACATQKMTTSLLTRILQMATDEHQPPMIG 414 Query: 405 NRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 R +LKY +PP ++ +K+P+SYKRYL N R + + G PIR+ FQ Sbjct: 415 GRRIKLKYAHPGGYNPPIIVVHGNQMDKLPDSYKRYLSNYYRKSLKIIGSPIRLLFQEGS 474 Query: 465 NPY 467 NP+ Sbjct: 475 NPF 477 >gi|323977306|gb|EGB72392.1| ribosome GTPase EngA [Escherichia coli TW10509] Length = 490 Score = 280 bits (717), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 168/472 (35%), Positives = 260/472 (55%), Gaps = 7/472 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A I G F +DT GI Sbjct: 1 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ LAI EA ++LF++D++AG+ P D AI LR + P +V+NK Sbjct: 61 -DGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGT-SELHSVIFKIFKQKYPNHPLEMIENNK 179 D + + YSL EI I+A H G S L V+ + P E+ E+ + Sbjct: 120 TDGLDPDQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHVLLPWMEDIAPQE--EVDEDAE 177 Query: 180 R-NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 + +EN E + S P+++A+VGRPNVGKSTL NR+LG R++ G T Sbjct: 178 YWAQFEAEENGEEEEEDDFDPQSLPIKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTT 237 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RDS+ I + DTAG+RK +IT+++E+ +V K++Q++ ++++DA Sbjct: 238 RDSIYIPMERDGREYVLIDTAGVRKRGKITDAVEKFSVIKTLQAIEDANVVMLVIDAREG 297 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 QDL ++ + N+G ++V+ +NKWD +S ++ + ++ L I ++ IS Sbjct: 298 ISDQDLSLLGFILNSGRSLVIVVNKWDGLSQEVK--EQVKETLDFRLGFIDFARVHFISA 355 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 G G+ +L SV E R+ TS L + + PP + R +LKY Sbjct: 356 LHGSGVGNLFESVREAYDSSTRRVGTSMLTRIMTMAVEDHQPPLVRGRRVKLKYAHAGGY 415 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I +P+SYKRYL+N R + + G PIR+ F+ +NPY K Sbjct: 416 NPPIVVIHGNQVKDLPDSYKRYLMNYFRKSLDVMGTPIRIQFKEGENPYANK 467 >gi|22125256|ref|NP_668679.1| GTP-binding protein EngA [Yersinia pestis KIM 10] gi|45442513|ref|NP_994052.1| GTP-binding protein EngA [Yersinia pestis biovar Microtus str. 91001] gi|108808309|ref|YP_652225.1| GTP-binding protein EngA [Yersinia pestis Antiqua] gi|108811426|ref|YP_647193.1| GTP-binding protein EngA [Yersinia pestis Nepal516] gi|145599492|ref|YP_001163568.1| GTP-binding protein EngA [Yersinia pestis Pestoides F] gi|149365335|ref|ZP_01887370.1| putative GTP-binding protein [Yersinia pestis CA88-4125] gi|153948065|ref|YP_001400171.1| GTP-binding protein EngA [Yersinia pseudotuberculosis IP 31758] gi|162419655|ref|YP_001605020.1| GTP-binding protein EngA [Yersinia pestis Angola] gi|165925991|ref|ZP_02221823.1| GTP-binding protein EngA [Yersinia pestis biovar Orientalis str. F1991016] gi|165937070|ref|ZP_02225635.1| GTP-binding protein EngA [Yersinia pestis biovar Orientalis str. IP275] gi|166008076|ref|ZP_02228974.1| GTP-binding protein EngA [Yersinia pestis biovar Antiqua str. E1979001] gi|166212264|ref|ZP_02238299.1| GTP-binding protein EngA [Yersinia pestis biovar Antiqua str. B42003004] gi|167398998|ref|ZP_02304522.1| GTP-binding protein EngA [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167421200|ref|ZP_02312953.1| GTP-binding protein EngA [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423353|ref|ZP_02315106.1| GTP-binding protein EngA [Yersinia pestis biovar Mediaevalis str. K1973002] gi|170023543|ref|YP_001720048.1| GTP-binding protein EngA [Yersinia pseudotuberculosis YPIII] gi|218929935|ref|YP_002347810.1| GTP-binding protein EngA [Yersinia pestis CO92] gi|229838454|ref|ZP_04458613.1| 50S ribosome associated factor involved in the biogenesis and stability of 50S ribosomal subunits [Yersinia pestis biovar Orientalis str. PEXU2] gi|229895156|ref|ZP_04510332.1| 50S ribosome associated factor involved in the biogenesis and stability of 50S ribosomal subunits [Yersinia pestis Pestoides A] gi|229899021|ref|ZP_04514165.1| 50S ribosome associated factor involved in the biogenesis and stability of 50S ribosomal subunits [Yersinia pestis biovar Orientalis str. India 195] gi|229901683|ref|ZP_04516805.1| 50S ribosome associated factor involved in the biogenesis and stability of 50S ribosomal subunits [Yersinia pestis Nepal516] gi|270489878|ref|ZP_06206952.1| ribosome-associated GTPase EngA [Yersinia pestis KIM D27] gi|294504563|ref|YP_003568625.1| GTP-binding protein EngA [Yersinia pestis Z176003] gi|26006726|sp|Q8ZCT9|DER_YERPE RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|123246587|sp|Q1CK87|DER_YERPN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|123372277|sp|Q1C5J2|DER_YERPA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|166225935|sp|A4TMT3|DER_YERPP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|166920105|sp|A7FFZ3|DER_YERP3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|238687331|sp|A9R7Z8|DER_YERPG RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|238688573|sp|B1JSA4|DER_YERPY RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|21958127|gb|AAM84930.1|AE013738_7 putative GTP-binding factor [Yersinia pestis KIM 10] gi|45437378|gb|AAS62929.1| putative GTP-binding protein [Yersinia pestis biovar Microtus str. 91001] gi|108775074|gb|ABG17593.1| GTP-binding protein [Yersinia pestis Nepal516] gi|108780222|gb|ABG14280.1| putative GTP-binding protein [Yersinia pestis Antiqua] gi|115348546|emb|CAL21486.1| putative GTP-binding protein [Yersinia pestis CO92] gi|145211188|gb|ABP40595.1| GTP-binding protein [Yersinia pestis Pestoides F] gi|149291748|gb|EDM41822.1| putative GTP-binding protein [Yersinia pestis CA88-4125] gi|152959560|gb|ABS47021.1| GTP-binding protein EngA [Yersinia pseudotuberculosis IP 31758] gi|162352470|gb|ABX86418.1| GTP-binding protein EngA [Yersinia pestis Angola] gi|165914933|gb|EDR33545.1| GTP-binding protein EngA [Yersinia pestis biovar Orientalis str. IP275] gi|165922195|gb|EDR39372.1| GTP-binding protein EngA [Yersinia pestis biovar Orientalis str. F1991016] gi|165992458|gb|EDR44759.1| GTP-binding protein EngA [Yersinia pestis biovar Antiqua str. E1979001] gi|166206195|gb|EDR50675.1| GTP-binding protein EngA [Yersinia pestis biovar Antiqua str. B42003004] gi|166960689|gb|EDR56710.1| GTP-binding protein EngA [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051502|gb|EDR62910.1| GTP-binding protein EngA [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057523|gb|EDR67269.1| GTP-binding protein EngA [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169750077|gb|ACA67595.1| small GTP-binding protein [Yersinia pseudotuberculosis YPIII] gi|229681612|gb|EEO77706.1| 50S ribosome associated factor involved in the biogenesis and stability of 50S ribosomal subunits [Yersinia pestis Nepal516] gi|229687966|gb|EEO80038.1| 50S ribosome associated factor involved in the biogenesis and stability of 50S ribosomal subunits [Yersinia pestis biovar Orientalis str. India 195] gi|229694820|gb|EEO84867.1| 50S ribosome associated factor involved in the biogenesis and stability of 50S ribosomal subunits [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701918|gb|EEO89941.1| 50S ribosome associated factor involved in the biogenesis and stability of 50S ribosomal subunits [Yersinia pestis Pestoides A] gi|262362442|gb|ACY59163.1| GTP-binding protein EngA [Yersinia pestis D106004] gi|262366551|gb|ACY63108.1| GTP-binding protein EngA [Yersinia pestis D182038] gi|270338382|gb|EFA49159.1| ribosome-associated GTPase EngA [Yersinia pestis KIM D27] gi|294355022|gb|ADE65363.1| GTP-binding protein EngA [Yersinia pestis Z176003] gi|320016011|gb|ADV99582.1| ferrous iron transport protein B [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 495 Score = 280 bits (717), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 165/483 (34%), Positives = 258/483 (53%), Gaps = 24/483 (4%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI IA+VG PNVGKSTLFNRL + A+V + PG+TRDR YG+A + G F +VDT GI Sbjct: 1 MIPVIALVGRPNVGKSTLFNRLTHTRDALVADFPGLTRDRKYGRAEVEGHEFIVVDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M Q+ LAI EA ++LF++D++AG+ P D I LR + +V+NK Sbjct: 61 -DGTEDGVETKMAGQSLLAIEEADIVLFMVDARAGLMPADQGIAQHLRSREKATFLVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEM------ 174 D + YSL E+ I+A H G ++L + + Sbjct: 120 TDGIDPDTATADFYSLGLGEVHAIAASHGRGVTQLIEDVMAPYMDAEEPEVELTEEEENA 179 Query: 175 ---IENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLT 231 E + E+ P E+ + + P+++A+VGRPNVGKSTL NR+LG +R++ Sbjct: 180 AYWAEQEAQGEDVPPEDPEDDFDPR----TLPIKLAIVGRPNVGKSTLTNRILGEDRVVV 235 Query: 232 GSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIV 291 G TRDS+ I + + DTAG+RK +ITE++E+ +V K++Q++ ++ Sbjct: 236 YDMPGTTRDSIYIPMTRDDREYILIDTAGVRKRGKITETVEKFSVIKTLQAIEDSNVVLL 295 Query: 292 LLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSD----KLNLLQDLRTKAIKNLPQ 347 ++DA QDL ++ + N+G ++V+A+NKWD +++ ++ + DLR L Sbjct: 296 VIDARDGISDQDLSLLGFILNSGRSLVIAVNKWDGMTEEARAQVKDMLDLR------LGF 349 Query: 348 IGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRY 407 + I+ IS G G+ +L SV E R+ TS L +Q + + PP + R Sbjct: 350 VDFARIHFISALHGSGVGNLFESVQEAYDCSTKRVGTSLLTRIMQMAEEDHQPPLVRGRR 409 Query: 408 NRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 +LKY +PP +I + +SYKRYL+N R + + G PIR+ F+ +NP+ Sbjct: 410 VKLKYAHAGGYNPPIVVIHGNQVTDLSDSYKRYLMNYFRRSLKVMGTPIRIQFKEGENPF 469 Query: 468 IKK 470 K Sbjct: 470 AGK 472 >gi|296136228|ref|YP_003643470.1| ribosome-associated GTPase EngA [Thiomonas intermedia K12] gi|295796350|gb|ADG31140.1| ribosome-associated GTPase EngA [Thiomonas intermedia K12] Length = 457 Score = 280 bits (716), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 161/471 (34%), Positives = 246/471 (52%), Gaps = 18/471 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +++VG PNVGKSTLFNR+ + + A+V + PG+TRDR YG + +VDT G Sbjct: 1 MTPIVSLVGRPNVGKSTLFNRMTRSRDAIVADMPGLTRDRHYGMLRMADRPVIVVDTGGF 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + I QM QT AI E+ L++FL+D + G++P D I + LRK PI++ NK Sbjct: 61 EPVVDTGIVHQMARQTRQAIAESDLVVFLVDLRTGLSPQDLHIAAELRKTGKPILLAVNK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + R E + L E ISA H +L I Q P+ P E I + Sbjct: 121 AEGRHGHAALAEFHELGLGEPFSISAAHGDSVPDLLDRIL----QALPSEPSEGIPETEA 176 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 E E + K LR+A+ GRPNVGKSTL+N L+G R++ G TRD Sbjct: 177 ASEVAAE--------TTKPREHSLRLAIAGRPNVGKSTLVNALVGEERVIAFDMPGTTRD 228 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 ++ + + + DTAG+R+ ++ E++E+ +V K++Q++ ++LLDAT Sbjct: 229 AIEVPFERDGRKFILIDTAGLRRKGKVFEAVEKFSVIKTLQAIEQANVVVLLLDATEGVS 288 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVS--DKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 QD I G A+VLA NKWD V + L+ +R + LP + ++IS Sbjct: 289 DQDAHIASFAVEAGRALVLAANKWDAVDTYGRERLMVAIRQR----LPFVSFAKFHSISA 344 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 RTG GL+ LM SV+ + ++ T L + + Q PP +L+Y Q + Sbjct: 345 RTGSGLNGLMKSVIAAHAAAYRKLPTPKLTRAIIEAVAQQQPPRSGPVRPKLRYAHQGGT 404 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIK 469 +PP +I + +++P +Y RYL +LR F L+G P+R+ ++SS NPY + Sbjct: 405 NPPIIIIHGSALDRVPATYTRYLEGQLREKFDLTGTPLRVEYRSSTNPYAR 455 >gi|59711240|ref|YP_204016.1| GTP-binding protein EngA [Vibrio fischeri ES114] gi|197336109|ref|YP_002155390.1| ribosome-associated GTPase EngA [Vibrio fischeri MJ11] gi|81311005|sp|Q5E768|DER_VIBF1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|238690264|sp|B5FAX6|DER_VIBFM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|59479341|gb|AAW85128.1| predicted GTP-binding protein [Vibrio fischeri ES114] gi|197317599|gb|ACH67046.1| ribosome-associated GTPase EngA [Vibrio fischeri MJ11] Length = 500 Score = 280 bits (716), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 161/482 (33%), Positives = 266/482 (55%), Gaps = 25/482 (5%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A + F ++DT GI Sbjct: 1 MIPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAKLEEQEFILIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ AI EA ++LF++D +AG+T D AI LR + P +V NK Sbjct: 61 -DGTEQGVETKMAEQSLAAIEEADVVLFMVDGRAGLTSADEAIAKHLRSREKPTFLVVNK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D A E + L ++ +I+A H G + L + F + E++E + + Sbjct: 120 IDGIDADAASAEFWQLGMNKVYQIAASHGRGVTSLLELALAPFME-------ELVEESLK 172 Query: 181 NEESP-------------KENITSEG--KSSVKNISKPLRIAVVGRPNVGKSTLINRLLG 225 +E ++++T E K + +P+++A++GRPNVGKSTL NR+LG Sbjct: 173 DENGEITDLTEFEDFEDEEKDLTEEDAEKDFARLQDQPIKLAIIGRPNVGKSTLTNRILG 232 Query: 226 YNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRT 285 R++ G TRDS+ I + + DTAG+R+ RI E++E+ +V K++++V Sbjct: 233 EERVVVYDMPGTTRDSIYIPMEREGQEYVLIDTAGVRRRGRINETVEKFSVIKTLKAVED 292 Query: 286 CETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNL 345 ++++DA QDL ++ N G ++V+A+NKWD + + ++ + ++++ + L Sbjct: 293 ANVVLLVIDARENISDQDLSLLGFALNAGRSLVIAVNKWDGLDN--DVKEKVKSELDRRL 350 Query: 346 PQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFN 405 + I+ IS G G+ L SV E R+ TS L ++ Q + PP + Sbjct: 351 GFVDFARIHFISALHGTGVGHLYESVQEAYVSATKRVGTSVLTRIMKMAQDDHQPPLVRG 410 Query: 406 RYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 R +LKY +PP +I ++P SYKR+L+N R + + G PIR+ FQ+S+N Sbjct: 411 RRVKLKYAHAGGYNPPLIVIHGNQVKELPSSYKRFLMNYYRKSLEIMGTPIRIQFQNSEN 470 Query: 466 PY 467 P+ Sbjct: 471 PF 472 >gi|170725905|ref|YP_001759931.1| GTP-binding protein EngA [Shewanella woodyi ATCC 51908] gi|238688689|sp|B1KLB1|DER_SHEWM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|169811252|gb|ACA85836.1| small GTP-binding protein [Shewanella woodyi ATCC 51908] Length = 488 Score = 280 bits (716), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 157/467 (33%), Positives = 260/467 (55%), Gaps = 6/467 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI +A+VG PNVGKSTLFNRL + + A+V ++PG+TRDR YG+A ++G F +VDT GI Sbjct: 1 MIPVVALVGRPNVGKSTLFNRLTRTRDALVADYPGLTRDRKYGRAHLSGYEFIVVDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG I M +Q+ AI EA ++LFL D++AG+T D AI+ LR++ +V+NK Sbjct: 61 -DGTEEGIETHMAEQSMAAIEEADVVLFLTDARAGLTAADQAISEHLRRREKTTFVVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D A E ++L E+ +++A G + + + + L +++ Sbjct: 120 VDGIDADSACAEFWALGLGEVYQMAAAQGRGVTNMIEYALAPYAEALG---LNRDGDDEE 176 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 +E + + P+++AV+G+PNVGKSTL NR+LG R++ G TRD Sbjct: 177 EKEEREYTEEEAEAEQTRLQDLPIKLAVIGKPNVGKSTLTNRILGEERVVVYDAPGTTRD 236 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ I + DTAG+R+ S++ E++E+ +V K++++V C ++++DA Sbjct: 237 SIYIPMERDGREYVLIDTAGVRRRSKVNETVEKFSVIKTLKAVEDCNVVLLIVDAREGIA 296 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 +QDL ++ N G A+V+A+NKWD + ++ ++++ + L I I+ IS Sbjct: 297 EQDLGLLGFALNAGRALVIAVNKWDGIDQ--DIKDRVKSELDRRLGFIDFARIHFISALH 354 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G G+ L SV E + R++TS L +Q Q + PP + R +LKY +P Sbjct: 355 GTGVGHLFESVQEAYESATRRVSTSMLTRIMQMAQDDHQPPMVNGRRVKLKYAHAGGYNP 414 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 P ++ K+P+SYKR+++N R + + G PI++ FQ NP+ Sbjct: 415 PIVVVHGNQVKKLPDSYKRFMMNYYRRSLKVMGTPIQVRFQDGDNPF 461 >gi|238785325|ref|ZP_04629314.1| GTP-binding protein engA [Yersinia bercovieri ATCC 43970] gi|238713778|gb|EEQ05801.1| GTP-binding protein engA [Yersinia bercovieri ATCC 43970] Length = 494 Score = 280 bits (716), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 165/478 (34%), Positives = 260/478 (54%), Gaps = 15/478 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI IA+VG PNVGKSTLFNRL + A+V + PG+TRDR YG+A + G F ++DT GI Sbjct: 1 MIPVIALVGRPNVGKSTLFNRLTHTRDALVADFPGLTRDRKYGRAEVEGHEFIVIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M Q+ LAI EA ++LF++D++AG+ P D I LR + +V+NK Sbjct: 61 -DGTEDGVETKMAGQSLLAIEEADIVLFMVDARAGLMPADQGIAQHLRSREKATFLVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL-HSVIFKIFKQKYPNHPLEMIENNK 179 D + YSL E+ I+A H G ++L V+ + P L E N Sbjct: 120 TDGIDPDTATADFYSLGLGEVHAIAASHGRGVTQLIEDVMAPYIDAEEPEVELTDEEANA 179 Query: 180 R---NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSG 236 +E+ + I + + + P+++A+VGRPNVGKSTL NR+LG +R++ G Sbjct: 180 AYWAAQEAGDDEIPEDEEDDFDPRTLPIKLAIVGRPNVGKSTLTNRILGEDRVVVYDLPG 239 Query: 237 ITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDAT 296 TRDS+ I + DTAG+RK ++TE++E+ +V K++Q++ ++++DA Sbjct: 240 TTRDSIYIPMTRDEREYVLIDTAGVRKRGKVTETVEKFSVIKTLQAIEDSNVVLLVIDAR 299 Query: 297 IPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNL----LQDLRTKAIKNLPQIGDIY 352 QDL ++ + N+G ++V+A+NKWD ++++ + DLR L + Sbjct: 300 DGISDQDLSLLGFILNSGRSLVIAVNKWDGMTEEARAQVKDMLDLR------LGFVDFAR 353 Query: 353 INTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKY 412 I+ IS G G+ +L S+ E R+ TS L +Q + + PP + R +LKY Sbjct: 354 IHFISALHGSGVGNLFESIQEAYDCSTKRVGTSLLTRIMQMAEEDHQPPLVRGRRVKLKY 413 Query: 413 ITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I + +SYKRYL+N R + + G PIR+ F+ +NP+ K Sbjct: 414 AHAGGYNPPIVVIHGNQVTDLSDSYKRYLMNYFRRSLKVMGTPIRIQFKEGENPFAGK 471 >gi|300904315|ref|ZP_07122172.1| ribosome-associated GTPase EngA [Escherichia coli MS 84-1] gi|300403747|gb|EFJ87285.1| ribosome-associated GTPase EngA [Escherichia coli MS 84-1] Length = 492 Score = 280 bits (716), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 168/472 (35%), Positives = 260/472 (55%), Gaps = 7/472 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A I G F +DT GI Sbjct: 10 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGI 69 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ LAI EA ++LF++D++AG+ P D AI LR + P +V+NK Sbjct: 70 -DGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANK 128 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGT-SELHSVIFKIFKQKYPNHPLEMIENNK 179 D + + YSL EI I+A H G S L V+ + P E+ E+ + Sbjct: 129 TDGLDPDQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHVLLPWMEDLAPQE--EVDEDAE 186 Query: 180 R-NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 + +EN E + S P+++A+VGRPNVGKSTL NR+LG R++ G T Sbjct: 187 YWAQFEAEENGEEEEEDDFDPQSLPIKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTT 246 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RDS+ I + DTAG+RK +IT+++E+ +V K++Q++ ++++DA Sbjct: 247 RDSIYIPMERDGREYVLIDTAGVRKRGKITDAVEKFSVIKTLQAIEDANVVMLVIDAREG 306 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 QDL ++ + N+G ++V+ +NKWD +S ++ + ++ L I ++ IS Sbjct: 307 ISDQDLSLLGFILNSGRSLVIVVNKWDGLSQEVK--EQVKETLDFRLGFIDFARVHFISA 364 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 G G+ +L SV E R+ TS L + + PP + R +LKY Sbjct: 365 LHGSGVGNLFESVREAYDSSTRRVGTSMLTRIMTMAVEDHQPPLVRGRRVKLKYAHAGGY 424 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I +P+SYKRYL+N R + + G PIR+ F+ +NPY K Sbjct: 425 NPPIVVIHGNQVKDLPDSYKRYLMNYFRKSLDVMGSPIRIQFKEGENPYANK 476 >gi|300898385|ref|ZP_07116728.1| ribosome-associated GTPase EngA [Escherichia coli MS 198-1] gi|300940238|ref|ZP_07154836.1| ribosome-associated GTPase EngA [Escherichia coli MS 21-1] gi|300357925|gb|EFJ73795.1| ribosome-associated GTPase EngA [Escherichia coli MS 198-1] gi|300454934|gb|EFK18427.1| ribosome-associated GTPase EngA [Escherichia coli MS 21-1] Length = 499 Score = 280 bits (716), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 168/472 (35%), Positives = 260/472 (55%), Gaps = 7/472 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A I G F +DT GI Sbjct: 10 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGI 69 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ LAI EA ++LF++D++AG+ P D AI LR + P +V+NK Sbjct: 70 -DGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANK 128 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGT-SELHSVIFKIFKQKYPNHPLEMIENNK 179 D + + YSL EI I+A H G S L V+ + P E+ E+ + Sbjct: 129 TDGLDPDQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHVLLPWMEDLAPQE--EVDEDAE 186 Query: 180 R-NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 + +EN E + S P+++A+VGRPNVGKSTL NR+LG R++ G T Sbjct: 187 YWAQFEAEENGEEEEEDDFDPQSLPIKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTT 246 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RDS+ I + DTAG+RK +IT+++E+ +V K++Q++ ++++DA Sbjct: 247 RDSIYIPMERDGREYVLIDTAGVRKRGKITDAVEKFSVIKTLQAIEDANVVMLVIDAREG 306 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 QDL ++ + N+G ++V+ +NKWD +S ++ + ++ L I ++ IS Sbjct: 307 ISDQDLSLLGFILNSGRSLVIVVNKWDGLSQEVK--EQVKETLDFRLGFIDFARVHFISA 364 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 G G+ +L SV E R+ TS L + + PP + R +LKY Sbjct: 365 LHGSGVGNLFESVREAYDSSTRRVGTSMLTRIMTMAVEDHQPPLVRGRRVKLKYAHAGGY 424 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I +P+SYKRYL+N R + + G PIR+ F+ +NPY K Sbjct: 425 NPPIVVIHGNQVKDLPDSYKRYLMNYFRKSLDVMGSPIRIQFKEGENPYANK 476 >gi|293410925|ref|ZP_06654501.1| ribosome-associated GTPase EngA [Escherichia coli B354] gi|291471393|gb|EFF13877.1| ribosome-associated GTPase EngA [Escherichia coli B354] Length = 499 Score = 280 bits (716), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 168/472 (35%), Positives = 260/472 (55%), Gaps = 7/472 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A I G F +DT GI Sbjct: 10 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGI 69 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ LAI EA ++LF++D++AG+ P D AI LR + P +V+NK Sbjct: 70 -DGTENGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANK 128 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGT-SELHSVIFKIFKQKYPNHPLEMIENNK 179 D + + YSL EI I+A H G S L V+ + P E+ E+ + Sbjct: 129 TDGLDPDQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHVLLPWMEDLAPQE--EVDEDAE 186 Query: 180 R-NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 + +EN E + S P+++A+VGRPNVGKSTL NR+LG R++ G T Sbjct: 187 YWAQFEAEENGEEEEEDDFDPQSLPIKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTT 246 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RDS+ I + DTAG+RK +IT+++E+ +V K++Q++ ++++DA Sbjct: 247 RDSIYIPMERDGREYVLIDTAGVRKRGKITDAVEKFSVIKTLQAIEDANVVMLVIDAREG 306 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 QDL ++ + N+G ++V+ +NKWD +S ++ + ++ L I ++ IS Sbjct: 307 ISDQDLSLLGFILNSGRSLVIVVNKWDGLSQEVK--EQVKETLDFRLGFIDFARVHFISA 364 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 G G+ +L SV E R+ TS L + + PP + R +LKY Sbjct: 365 LHGSGVGNLFESVREAYDSSTRRVGTSMLTRIMTMAVEDHQPPLVRGRRVKLKYAHAGGY 424 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I +P+SYKRYL+N R + + G PIR+ F+ +NPY K Sbjct: 425 NPPIVVIHGNQVKDLPDSYKRYLMNYFRKSLDVMGSPIRIQFKEGENPYANK 476 >gi|170681267|ref|YP_001744699.1| GTP-binding protein EngA [Escherichia coli SMS-3-5] gi|218706014|ref|YP_002413533.1| GTP-binding protein EngA [Escherichia coli UMN026] gi|293405952|ref|ZP_06649944.1| GTP-binding protein engA [Escherichia coli FVEC1412] gi|298381753|ref|ZP_06991352.1| GTP-binding protein engA [Escherichia coli FVEC1302] gi|331664074|ref|ZP_08364984.1| ribosome-associated GTPase EngA [Escherichia coli TA143] gi|226741139|sp|B7N699|DER_ECOLU RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|226741140|sp|B1LNG6|DER_ECOSM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|170518985|gb|ACB17163.1| GTP-binding protein EngA [Escherichia coli SMS-3-5] gi|218433111|emb|CAR14008.1| GTPase involved in ribosome synthesis and maintenance [Escherichia coli UMN026] gi|284922461|emb|CBG35548.1| GTP-binding protein [Escherichia coli 042] gi|291428160|gb|EFF01187.1| GTP-binding protein engA [Escherichia coli FVEC1412] gi|298279195|gb|EFI20709.1| GTP-binding protein engA [Escherichia coli FVEC1302] gi|323961327|gb|EGB56939.1| ribosome GTPase EngA [Escherichia coli H489] gi|331059873|gb|EGI31850.1| ribosome-associated GTPase EngA [Escherichia coli TA143] Length = 490 Score = 280 bits (716), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 168/472 (35%), Positives = 260/472 (55%), Gaps = 7/472 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A I G F +DT GI Sbjct: 1 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ LAI EA ++LF++D++AG+ P D AI LR + P +V+NK Sbjct: 61 -DGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGT-SELHSVIFKIFKQKYPNHPLEMIENNK 179 D + + YSL EI I+A H G S L V+ + P E+ E+ + Sbjct: 120 TDGLDPDQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHVLLPWMEDLAPQE--EVDEDAE 177 Query: 180 R-NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 + +EN E + S P+++A+VGRPNVGKSTL NR+LG R++ G T Sbjct: 178 YWAQFEAEENGEEEEEDDFDPQSLPIKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTT 237 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RDS+ I + DTAG+RK +IT+++E+ +V K++Q++ ++++DA Sbjct: 238 RDSIYIPMERDGREYVLIDTAGVRKRGKITDAVEKFSVIKTLQAIEDANVVMLVIDAREG 297 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 QDL ++ + N+G ++V+ +NKWD +S ++ + ++ L I ++ IS Sbjct: 298 ISDQDLSLLGFILNSGRSLVIVVNKWDGLSQEVK--EQVKETLDFRLGFIDFARVHFISA 355 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 G G+ +L SV E R+ TS L + + PP + R +LKY Sbjct: 356 LHGSGVGNLFESVREAYDSSTRRVGTSMLTRIMTMAVEDHQPPLVRGRRVKLKYAHAGGY 415 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I +P+SYKRYL+N R + + G PIR+ F+ +NPY K Sbjct: 416 NPPIVVIHGNQVKDLPDSYKRYLMNYFRKSLDVMGSPIRIQFKEGENPYANK 467 >gi|300820819|ref|ZP_07100969.1| ribosome-associated GTPase EngA [Escherichia coli MS 119-7] gi|300927126|ref|ZP_07142874.1| ribosome-associated GTPase EngA [Escherichia coli MS 182-1] gi|300930151|ref|ZP_07145572.1| ribosome-associated GTPase EngA [Escherichia coli MS 187-1] gi|300951784|ref|ZP_07165599.1| ribosome-associated GTPase EngA [Escherichia coli MS 116-1] gi|300958859|ref|ZP_07170967.1| ribosome-associated GTPase EngA [Escherichia coli MS 175-1] gi|301302868|ref|ZP_07208996.1| ribosome-associated GTPase EngA [Escherichia coli MS 124-1] gi|301330398|ref|ZP_07223040.1| ribosome-associated GTPase EngA [Escherichia coli MS 78-1] gi|301648266|ref|ZP_07248009.1| ribosome-associated GTPase EngA [Escherichia coli MS 146-1] gi|309794442|ref|ZP_07688865.1| ribosome-associated GTPase EngA [Escherichia coli MS 145-7] gi|300314511|gb|EFJ64295.1| ribosome-associated GTPase EngA [Escherichia coli MS 175-1] gi|300416896|gb|EFK00207.1| ribosome-associated GTPase EngA [Escherichia coli MS 182-1] gi|300448981|gb|EFK12601.1| ribosome-associated GTPase EngA [Escherichia coli MS 116-1] gi|300461957|gb|EFK25450.1| ribosome-associated GTPase EngA [Escherichia coli MS 187-1] gi|300526572|gb|EFK47641.1| ribosome-associated GTPase EngA [Escherichia coli MS 119-7] gi|300841803|gb|EFK69563.1| ribosome-associated GTPase EngA [Escherichia coli MS 124-1] gi|300843627|gb|EFK71387.1| ribosome-associated GTPase EngA [Escherichia coli MS 78-1] gi|301073653|gb|EFK88459.1| ribosome-associated GTPase EngA [Escherichia coli MS 146-1] gi|308121898|gb|EFO59160.1| ribosome-associated GTPase EngA [Escherichia coli MS 145-7] gi|315256531|gb|EFU36499.1| ribosome-associated GTPase EngA [Escherichia coli MS 85-1] gi|324020071|gb|EGB89290.1| ribosome-associated GTPase EngA [Escherichia coli MS 117-3] Length = 499 Score = 280 bits (715), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 168/472 (35%), Positives = 260/472 (55%), Gaps = 7/472 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A I G F +DT GI Sbjct: 10 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGI 69 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ LAI EA ++LF++D++AG+ P D AI LR + P +V+NK Sbjct: 70 -DGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANK 128 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGT-SELHSVIFKIFKQKYPNHPLEMIENNK 179 D + + YSL EI I+A H G S L V+ + P E+ E+ + Sbjct: 129 TDGLDPDQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHVLLPWMEDLAPQE--EVDEDAE 186 Query: 180 R-NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 + +EN E + S P+++A+VGRPNVGKSTL NR+LG R++ G T Sbjct: 187 YWAQFEAEENGEEEEEDDFDPQSLPIKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTT 246 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RDS+ I + DTAG+RK +IT+++E+ +V K++Q++ ++++DA Sbjct: 247 RDSIYIPMERDGREYVLIDTAGVRKRGKITDAVEKFSVIKTLQAIEDANVVMLVIDAREG 306 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 QDL ++ + N+G ++V+ +NKWD +S ++ + ++ L I ++ IS Sbjct: 307 ISDQDLSLLGFILNSGRSLVIVVNKWDGLSQEVK--EQVKETLDFRLGFIDFARVHFISA 364 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 G G+ +L SV E R+ TS L + + PP + R +LKY Sbjct: 365 LHGSGVGNLFESVREAYDSSTRRVGTSMLTRIMTMAVEDHQPPLVRGRRVKLKYAHAGGY 424 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I +P+SYKRYL+N R + + G PIR+ F+ +NPY K Sbjct: 425 NPPIVVIHGNQVKDLPDSYKRYLMNYFRKSLDVMGSPIRIQFKEGENPYANK 476 >gi|297617642|ref|YP_003702801.1| ribosome-associated GTPase EngA [Syntrophothermus lipocalidus DSM 12680] gi|297145479|gb|ADI02236.1| ribosome-associated GTPase EngA [Syntrophothermus lipocalidus DSM 12680] Length = 442 Score = 280 bits (715), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 157/468 (33%), Positives = 259/468 (55%), Gaps = 34/468 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTLFNR+ + A+V + PG+TRDR+Y QA G F +VDT GI + Sbjct: 6 VALVGRPNVGKSTLFNRMAGLRKAIVEDTPGVTRDRIYEQAEWAGREFIVVDTGGIRFEE 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +A ++ Q+ELAI EA +I+ ++D++ G+TP D + LR+ N P+++ +NK++ Sbjct: 66 GDILAPEVKKQSELAIEEADVIVMVVDAREGVTPEDEMVAGILRRANKPVVLAANKVEDF 125 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + Y L E + +SA H + T EL + + EE Sbjct: 126 KKHLGYLDFYRLGLGEPIPVSAIHGMNTDELLDAVIALLPPA---------------EEE 170 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 K+ + +RIA+VGRPNVGKS+L+NRL+G R++ G TRD++ Sbjct: 171 EKDELA-------------VRIALVGRPNVGKSSLLNRLIGEERVIVSEIPGTTRDAIDT 217 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + + + DTAG+R+ SRI E E+ +V +++++V + +++LDAT +QD Sbjct: 218 PFRYGGNRYVLIDTAGIRRKSRIKEPTERYSVLRALRAVERSDVVLIILDATERVTEQDK 277 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSD---KLNLLQDLRTKAIKNLPQIGDIYINTISGRTG 361 +I V G + ++ +NKWD+V + DL + +K L +YI+ ++G+ Sbjct: 278 KIAGFVHEAGKSNIIIVNKWDLVKKTERTMKEFDDLIREELKFLAYSPILYISALTGQRV 337 Query: 362 EGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 + + +++ V E + W+ ++ T+ LN L++ NPPP + + YITQI++ PP Sbjct: 338 KQVIEVVDFVAE--QYWR-KVPTAELNKVLREAVAVNPPPGGGKKRVNIFYITQIKTGPP 394 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIK 469 SF +F P ++ SY RYL N LR NF G PIR+ + ++ Y K Sbjct: 395 SFALFVNHPEELHFSYLRYLENTLRENFGFEGTPIRLVLRQRESRYQK 442 >gi|300817719|ref|ZP_07097934.1| ribosome-associated GTPase EngA [Escherichia coli MS 107-1] gi|300529707|gb|EFK50769.1| ribosome-associated GTPase EngA [Escherichia coli MS 107-1] Length = 499 Score = 280 bits (715), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 168/472 (35%), Positives = 260/472 (55%), Gaps = 7/472 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A I G F +DT GI Sbjct: 10 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGI 69 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ LAI EA ++LF++D++AG+ P D AI LR + P +V+NK Sbjct: 70 -DGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANK 128 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGT-SELHSVIFKIFKQKYPNHPLEMIENNK 179 D + + YSL EI I+A H G S L V+ + P E+ E+ + Sbjct: 129 TDGLDPDQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHVLLPWMEDLAPQE--EVDEDAE 186 Query: 180 R-NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 + +EN E + S P+++A+VGRPNVGKSTL NR+LG R++ G T Sbjct: 187 YWAQFEAEENGEEEEEDDFDPQSLPIKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTT 246 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RDS+ I + DTAG+RK +IT+++E+ +V K++Q++ ++++DA Sbjct: 247 RDSIYIPMERDGREYVLIDTAGVRKRGKITDAVEKFSVIKTLQAIEDANVVMLVIDAHEG 306 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 QDL ++ + N+G ++V+ +NKWD +S ++ + ++ L I ++ IS Sbjct: 307 ISDQDLSLLGFILNSGRSLVIVVNKWDGLSQEVK--EQVKETLDFRLGFIDFARVHFISA 364 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 G G+ +L SV E R+ TS L + + PP + R +LKY Sbjct: 365 LHGSGVGNLFESVREAYDSSTRRVGTSMLTRIMTMAVEDHQPPLVRGRRVKLKYAHAGGY 424 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I +P+SYKRYL+N R + + G PIR+ F+ +NPY K Sbjct: 425 NPPIVVIHGNQVKDLPDSYKRYLMNYFRKSLDVMGSPIRIQFKEGENPYANK 476 >gi|320185211|gb|EFW59991.1| GTP-binding protein EngA [Shigella flexneri CDC 796-83] gi|332092745|gb|EGI97814.1| small GTP-binding domain protein [Shigella boydii 3594-74] Length = 490 Score = 280 bits (715), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 168/472 (35%), Positives = 260/472 (55%), Gaps = 7/472 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A I G F +DT GI Sbjct: 1 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ LAI EA ++LF++D++AG+ P D AI LR + P +V+NK Sbjct: 61 -DGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGT-SELHSVIFKIFKQKYPNHPLEMIENNK 179 D + + YSL EI I+A H G S L V+ + P E+ E+ + Sbjct: 120 TDGLDPDQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHVLLPWMEDLAPQE--EVDEDAE 177 Query: 180 R-NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 + +EN E + S P+++A+VGRPNVGKSTL NR+LG R++ G T Sbjct: 178 YWAQFEVEENGEEEEEDDFDPQSLPIKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTT 237 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RDS+ I + DTAG+RK +IT+++E+ +V K++Q++ ++++DA Sbjct: 238 RDSIYIPMERDGREYVLIDTAGVRKRGKITDAVEKFSVIKTLQAIEDANVVMLVIDAREG 297 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 QDL ++ + N+G ++V+ +NKWD +S ++ + ++ L I ++ IS Sbjct: 298 ISDQDLSLLGFILNSGRSLVIVVNKWDGLSQEVK--EQVKETLDFRLGFIDFARVHFISA 355 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 G G+ +L SV E R+ TS L + + PP + R +LKY Sbjct: 356 LHGSGVGNLFESVREAYDSSTRRVGTSMLTRIMTMAVEDHQPPLVRGRRVKLKYAHAGGY 415 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I +P+SYKRYL+N R + + G PIR+ F+ +NPY K Sbjct: 416 NPPIVVIHGNQVKDLPDSYKRYLMNYFRKSLDVMGSPIRIQFKEGENPYANK 467 >gi|89109317|ref|AP_003097.1| predicted GTP-binding protein [Escherichia coli str. K-12 substr. W3110] gi|90111450|ref|NP_417006.2| GTPase; multicopy suppressor of ftsJ [Escherichia coli str. K-12 substr. MG1655] gi|157156728|ref|YP_001463833.1| GTP-binding protein EngA [Escherichia coli E24377A] gi|157161986|ref|YP_001459304.1| GTP-binding protein EngA [Escherichia coli HS] gi|161367551|ref|NP_289064.2| GTP-binding protein EngA [Escherichia coli O157:H7 EDL933] gi|162139766|ref|NP_311400.2| GTP-binding protein EngA [Escherichia coli O157:H7 str. Sakai] gi|168748430|ref|ZP_02773452.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str. EC4113] gi|168756283|ref|ZP_02781290.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str. EC4401] gi|168761121|ref|ZP_02786128.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str. EC4501] gi|168768603|ref|ZP_02793610.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str. EC4486] gi|168773575|ref|ZP_02798582.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str. EC4196] gi|168778477|ref|ZP_02803484.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str. EC4076] gi|168787857|ref|ZP_02812864.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str. EC869] gi|168798882|ref|ZP_02823889.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str. EC508] gi|170019206|ref|YP_001724160.1| GTP-binding protein EngA [Escherichia coli ATCC 8739] gi|170082121|ref|YP_001731441.1| GTP-binding protein [Escherichia coli str. K-12 substr. DH10B] gi|188494621|ref|ZP_03001891.1| GTP-binding protein EngA [Escherichia coli 53638] gi|191167672|ref|ZP_03029481.1| ribosome-associated GTPase EngA [Escherichia coli B7A] gi|193064026|ref|ZP_03045111.1| ribosome-associated GTPase EngA [Escherichia coli E22] gi|194427302|ref|ZP_03059852.1| ribosome-associated GTPase EngA [Escherichia coli B171] gi|194437572|ref|ZP_03069668.1| ribosome-associated GTPase EngA [Escherichia coli 101-1] gi|195936653|ref|ZP_03082035.1| GTP-binding protein EngA [Escherichia coli O157:H7 str. EC4024] gi|208814338|ref|ZP_03255667.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str. EC4045] gi|208821434|ref|ZP_03261754.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str. EC4042] gi|209399678|ref|YP_002271981.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str. EC4115] gi|209919988|ref|YP_002294072.1| GTP-binding protein EngA [Escherichia coli SE11] gi|217326913|ref|ZP_03442996.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str. TW14588] gi|218555036|ref|YP_002387949.1| GTP-binding protein EngA [Escherichia coli IAI1] gi|218696138|ref|YP_002403805.1| GTP-binding protein EngA [Escherichia coli 55989] gi|238901676|ref|YP_002927472.1| putative GTP-binding protein [Escherichia coli BW2952] gi|253772595|ref|YP_003035426.1| GTP-binding protein EngA [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254162485|ref|YP_003045593.1| GTP-binding protein EngA [Escherichia coli B str. REL606] gi|254794457|ref|YP_003079294.1| GTP-binding protein EngA [Escherichia coli O157:H7 str. TW14359] gi|256017341|ref|ZP_05431206.1| GTP-binding protein EngA [Shigella sp. D9] gi|256021803|ref|ZP_05435668.1| GTP-binding protein EngA [Escherichia sp. 4_1_40B] gi|260845141|ref|YP_003222919.1| putative GTP-binding protein Der [Escherichia coli O103:H2 str. 12009] gi|260856605|ref|YP_003230496.1| putative GTP-binding protein Der [Escherichia coli O26:H11 str. 11368] gi|260869200|ref|YP_003235602.1| putative GTP-binding protein Der [Escherichia coli O111:H- str. 11128] gi|261223057|ref|ZP_05937338.1| 50S ribosome associated factor involved in the biogenesis and stability of 50S ribosomal subunits [Escherichia coli O157:H7 str. FRIK2000] gi|261259392|ref|ZP_05951925.1| putative GTP-binding protein Der [Escherichia coli O157:H7 str. FRIK966] gi|291283732|ref|YP_003500550.1| GTP-binding protein engA [Escherichia coli O55:H7 str. CB9615] gi|293415776|ref|ZP_06658419.1| ribosome-associated GTPase EngA [Escherichia coli B185] gi|293446864|ref|ZP_06663286.1| ribosome-associated GTPase EngA [Escherichia coli B088] gi|301022369|ref|ZP_07186258.1| ribosome-associated GTPase EngA [Escherichia coli MS 196-1] gi|307139146|ref|ZP_07498502.1| GTP-binding protein EngA [Escherichia coli H736] gi|307312494|ref|ZP_07592127.1| ribosome-associated GTPase EngA [Escherichia coli W] gi|312973248|ref|ZP_07787420.1| small GTP-binding domain protein [Escherichia coli 1827-70] gi|331669257|ref|ZP_08370105.1| ribosome-associated GTPase EngA [Escherichia coli TA271] gi|68566316|sp|P0A6P5|DER_ECOLI RecName: Full=GTPase Der; AltName: Full=Double era-like domain protein; AltName: Full=GTP-binding protein EngA gi|68566317|sp|P0A6P6|DER_ECO57 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|166920098|sp|A7ZPV4|DER_ECO24 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|166920099|sp|A8A317|DER_ECOHS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|189037147|sp|B1IWF0|DER_ECOLC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|226741138|sp|B7M7L5|DER_ECO8A RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|229784133|sp|B1XAY6|DER_ECODH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|238058973|sp|B5Z0Y0|DER_ECO5E RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|238058974|sp|B6I583|DER_ECOSE RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|254783153|sp|B7LCQ1|DER_ECO55 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|259645873|sp|C4ZX86|DER_ECOBW RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|85675433|dbj|BAA16397.2| predicted GTP-binding protein [Escherichia coli str. K12 substr. W3110] gi|87082120|gb|AAC75564.2| GTPase; multicopy suppressor of ftsJ [Escherichia coli str. K-12 substr. MG1655] gi|157067666|gb|ABV06921.1| GTP-binding protein EngA [Escherichia coli HS] gi|157078758|gb|ABV18466.1| GTP-binding protein EngA [Escherichia coli E24377A] gi|169754134|gb|ACA76833.1| small GTP-binding protein [Escherichia coli ATCC 8739] gi|169889956|gb|ACB03663.1| predicted GTP-binding protein [Escherichia coli str. K-12 substr. DH10B] gi|187770576|gb|EDU34420.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str. EC4196] gi|188017037|gb|EDU55159.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str. EC4113] gi|188489820|gb|EDU64923.1| GTP-binding protein EngA [Escherichia coli 53638] gi|189003270|gb|EDU72256.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str. EC4076] gi|189356591|gb|EDU75010.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str. EC4401] gi|189362188|gb|EDU80607.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str. EC4486] gi|189368460|gb|EDU86876.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str. EC4501] gi|189372347|gb|EDU90763.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str. EC869] gi|189378586|gb|EDU97002.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str. EC508] gi|190902271|gb|EDV62011.1| ribosome-associated GTPase EngA [Escherichia coli B7A] gi|192929261|gb|EDV82870.1| ribosome-associated GTPase EngA [Escherichia coli E22] gi|194414623|gb|EDX30895.1| ribosome-associated GTPase EngA [Escherichia coli B171] gi|194423378|gb|EDX39369.1| ribosome-associated GTPase EngA [Escherichia coli 101-1] gi|208735615|gb|EDZ84302.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str. EC4045] gi|208741557|gb|EDZ89239.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str. EC4042] gi|209161078|gb|ACI38511.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str. EC4115] gi|209913247|dbj|BAG78321.1| putative GTP-binding protein [Escherichia coli SE11] gi|217319280|gb|EEC27705.1| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str. TW14588] gi|218352870|emb|CAU98669.1| GTPase involved in ribosome synthesis and maintenance [Escherichia coli 55989] gi|218361804|emb|CAQ99403.1| GTPase involved in ribosome synthesis and maintenance [Escherichia coli IAI1] gi|238862452|gb|ACR64450.1| predicted GTP-binding protein [Escherichia coli BW2952] gi|242378109|emb|CAQ32882.1| 50S ribosomal subunit stability factor [Escherichia coli BL21(DE3)] gi|253323639|gb|ACT28241.1| small GTP-binding protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974386|gb|ACT40057.1| GTP-binding protein EngA [Escherichia coli B str. REL606] gi|253978553|gb|ACT44223.1| GTP-binding protein EngA [Escherichia coli BL21(DE3)] gi|254593857|gb|ACT73218.1| 50S ribosome associated factor involved in the biogenesis and stability of 50S ribosomal subunits [Escherichia coli O157:H7 str. TW14359] gi|257755254|dbj|BAI26756.1| predicted GTP-binding protein Der [Escherichia coli O26:H11 str. 11368] gi|257760288|dbj|BAI31785.1| predicted GTP-binding protein Der [Escherichia coli O103:H2 str. 12009] gi|257765556|dbj|BAI37051.1| predicted GTP-binding protein Der [Escherichia coli O111:H- str. 11128] gi|260448409|gb|ACX38831.1| small GTP-binding protein [Escherichia coli DH1] gi|290763605|gb|ADD57566.1| GTP-binding protein engA [Escherichia coli O55:H7 str. CB9615] gi|291323694|gb|EFE63122.1| ribosome-associated GTPase EngA [Escherichia coli B088] gi|291433424|gb|EFF06403.1| ribosome-associated GTPase EngA [Escherichia coli B185] gi|299881282|gb|EFI89493.1| ribosome-associated GTPase EngA [Escherichia coli MS 196-1] gi|306907417|gb|EFN37921.1| ribosome-associated GTPase EngA [Escherichia coli W] gi|309702843|emb|CBJ02174.1| GTP-binding protein [Escherichia coli ETEC H10407] gi|310331843|gb|EFP99078.1| small GTP-binding domain protein [Escherichia coli 1827-70] gi|315061830|gb|ADT76157.1| predicted GTP-binding protein [Escherichia coli W] gi|315137135|dbj|BAJ44294.1| GTP-binding protein engA [Escherichia coli DH1] gi|315615770|gb|EFU96402.1| small GTP-binding domain protein [Escherichia coli 3431] gi|320180501|gb|EFW55432.1| GTP-binding protein EngA [Shigella boydii ATCC 9905] gi|320188844|gb|EFW63503.1| GTP-binding protein EngA [Escherichia coli O157:H7 str. EC1212] gi|320200075|gb|EFW74664.1| GTP-binding protein EngA [Escherichia coli EC4100B] gi|320640855|gb|EFX10343.1| GTP-binding protein Der [Escherichia coli O157:H7 str. G5101] gi|320646298|gb|EFX15225.1| GTP-binding protein Der [Escherichia coli O157:H- str. 493-89] gi|320651803|gb|EFX20183.1| GTP-binding protein Der [Escherichia coli O157:H- str. H 2687] gi|320657189|gb|EFX24998.1| GTP-binding protein Der [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320662795|gb|EFX30127.1| GTP-binding protein Der [Escherichia coli O55:H7 str. USDA 5905] gi|320667599|gb|EFX34514.1| GTP-binding protein Der [Escherichia coli O157:H7 str. LSU-61] gi|323156165|gb|EFZ42324.1| small GTP-binding domain protein [Escherichia coli EPECa14] gi|323159381|gb|EFZ45366.1| small GTP-binding domain protein [Escherichia coli E128010] gi|323170218|gb|EFZ55871.1| small GTP-binding domain protein [Escherichia coli LT-68] gi|323177365|gb|EFZ62953.1| small GTP-binding domain protein [Escherichia coli 1180] gi|323184428|gb|EFZ69803.1| small GTP-binding domain protein [Escherichia coli 1357] gi|323377589|gb|ADX49857.1| ribosome-associated GTPase EngA [Escherichia coli KO11] gi|323936404|gb|EGB32694.1| ribosome-associated GTPase EngA [Escherichia coli E1520] gi|323941227|gb|EGB37412.1| ribosome GTPase EngA [Escherichia coli E482] gi|323944733|gb|EGB40800.1| ribosome-associated GTPase EngA [Escherichia coli H120] gi|323971076|gb|EGB66324.1| ribosome GTPase EngA [Escherichia coli TA007] gi|324118145|gb|EGC12042.1| ribosome GTPase EngA [Escherichia coli E1167] gi|326340309|gb|EGD64113.1| GTP-binding protein EngA [Escherichia coli O157:H7 str. 1125] gi|326344993|gb|EGD68737.1| GTP-binding protein EngA [Escherichia coli O157:H7 str. 1044] gi|331064451|gb|EGI36362.1| ribosome-associated GTPase EngA [Escherichia coli TA271] gi|332344383|gb|AEE57717.1| conserved hypothetical protein [Escherichia coli UMNK88] gi|333000699|gb|EGK20275.1| small GTP-binding domain protein [Shigella flexneri VA-6] Length = 490 Score = 280 bits (715), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 168/472 (35%), Positives = 260/472 (55%), Gaps = 7/472 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A I G F +DT GI Sbjct: 1 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ LAI EA ++LF++D++AG+ P D AI LR + P +V+NK Sbjct: 61 -DGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGT-SELHSVIFKIFKQKYPNHPLEMIENNK 179 D + + YSL EI I+A H G S L V+ + P E+ E+ + Sbjct: 120 TDGLDPDQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHVLLPWMEDLAPQE--EVDEDAE 177 Query: 180 R-NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 + +EN E + S P+++A+VGRPNVGKSTL NR+LG R++ G T Sbjct: 178 YWAQFEAEENGEEEEEDDFDPQSLPIKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTT 237 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RDS+ I + DTAG+RK +IT+++E+ +V K++Q++ ++++DA Sbjct: 238 RDSIYIPMERDGREYVLIDTAGVRKRGKITDAVEKFSVIKTLQAIEDANVVMLVIDAREG 297 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 QDL ++ + N+G ++V+ +NKWD +S ++ + ++ L I ++ IS Sbjct: 298 ISDQDLSLLGFILNSGRSLVIVVNKWDGLSQEVK--EQVKETLDFRLGFIDFARVHFISA 355 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 G G+ +L SV E R+ TS L + + PP + R +LKY Sbjct: 356 LHGSGVGNLFESVREAYDSSTRRVGTSMLTRIMTMAVEDHQPPLVRGRRVKLKYAHAGGY 415 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I +P+SYKRYL+N R + + G PIR+ F+ +NPY K Sbjct: 416 NPPIVVIHGNQVKDLPDSYKRYLMNYFRKSLDVMGSPIRIQFKEGENPYANK 467 >gi|291618407|ref|YP_003521149.1| EngA [Pantoea ananatis LMG 20103] gi|291153437|gb|ADD78021.1| EngA [Pantoea ananatis LMG 20103] gi|327394799|dbj|BAK12221.1| GTP-binding protein EngA [Pantoea ananatis AJ13355] Length = 494 Score = 280 bits (715), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 165/480 (34%), Positives = 265/480 (55%), Gaps = 20/480 (4%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A + G F ++DT GI Sbjct: 1 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFIVIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ LAI EA ++LF++D++AG+ D I LR + +V+NK Sbjct: 61 -DGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGMMAADQQIAKHLRSRQKATFLVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 D + + YSL EI I+A H G + L + +K P+E+ E ++ Sbjct: 120 TDGLDPDQAVVDFYSLGLGEIHAIAASHGRGVTSLLETALLPWMEKV--DPVEVTEEDE- 176 Query: 181 NEE------SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQ 234 NE + + E + + P+++A+VGRPNVGKSTL NR+LG +R++ Sbjct: 177 NEAYWAALAAEENGEEEEEEDDFDPTTLPIKLAIVGRPNVGKSTLTNRILGEDRVVVYDM 236 Query: 235 SGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLD 294 G TRDS+ I + DTAG+RK +IT+++E+ +V K++Q++ ++++D Sbjct: 237 PGTTRDSIYIPMERDGREYVLIDTAGVRKRGKITDTVEKFSVIKTLQAIEDANVVMLVID 296 Query: 295 ATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLP-QIGDI-- 351 A QDL ++ + N+G ++V+ +NKWD +S Q++R + + L ++G I Sbjct: 297 ARAGISDQDLSLLGFILNSGRSLVIVVNKWDGLS------QEVRDEVKETLDFRLGFIDF 350 Query: 352 -YINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRL 410 ++ IS G G+ +L SV E R+ TS L + + PP + R +L Sbjct: 351 ARVHFISALHGSGVGNLFESVTEAYDCSTKRVNTSLLTRIMNMAAEDHQPPLVRGRRVKL 410 Query: 411 KYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 KY +PP +I +P+SYKRYL+N R + ++ G PIR+ F+ +NPY K Sbjct: 411 KYAHAGGYNPPIVVIHGNQVKDLPDSYKRYLMNYFRRSLNVMGTPIRIQFKEGENPYEGK 470 >gi|83647146|ref|YP_435581.1| GTP-binding protein EngA [Hahella chejuensis KCTC 2396] gi|123531965|sp|Q2SDW8|DER_HAHCH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|83635189|gb|ABC31156.1| predicted GTPase [Hahella chejuensis KCTC 2396] Length = 472 Score = 280 bits (715), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 161/468 (34%), Positives = 254/468 (54%), Gaps = 34/468 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTLFNR+ + + A+V N PG+TRDR YG+ + G + +VDT GI G+ Sbjct: 5 IALVGRPNVGKSTLFNRMTRSRDAIVANLPGLTRDRKYGEGELEGKHYIVVDTGGIT-GE 63 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I M Q+ A+NEA ++LF++D++AG+TP D I LR + P I+V NK+D Sbjct: 64 EQGIDAAMAGQSFTAMNEADVVLFVVDAQAGVTPADEMIAKELRVRGKPTILVVNKIDGM 123 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + +++ F+E + +A H+ G L + F ++ P Sbjct: 124 QPEVAAADFFAMGFQEYMYTAAAHNRGVRSLLEKALEPFPEQEP---------------- 167 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 + E S + RI ++GRPNVGKSTL+NRLLG +R++ Q G TRDSV I Sbjct: 168 ----LEGEDDSGI-------RIGIIGRPNVGKSTLVNRLLGEDRVVVFDQPGTTRDSVYI 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + DTAG+R+ ++E++E+ ++ K++Q+++ +++LDA QDL Sbjct: 217 PYERLGERYTLIDTAGVRRRKNVSEAVEKFSIVKTLQAIKDAHVVVLVLDAREGIVDQDL 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVS--DKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 ++ G A+VLA+NKWD +S DK ++R + + + + I+ IS G Sbjct: 277 HLLGFAIEAGRALVLAINKWDGMSQDDK----DEVRREIDRRMGFVEYAQIHFISALHGT 332 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 G+ L SV E + +T+ L + L+ Q+ PP + R +L+Y Q S+PP Sbjct: 333 GVGHLYESVHECFDSAMAKWSTNQLTTLLEDAVSQHQPPMVNGRRIKLRYAHQGGSNPPL 392 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 ++ + +P SYKRYL N R + G PIR F+S +NP+ K Sbjct: 393 IIVHGNQTDALPNSYKRYLENTFRKVLKVVGTPIRFEFRSGENPFAGK 440 >gi|333002306|gb|EGK21870.1| small GTP-binding domain protein [Shigella flexneri K-272] gi|333016129|gb|EGK35461.1| small GTP-binding domain protein [Shigella flexneri K-227] Length = 490 Score = 280 bits (715), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 168/472 (35%), Positives = 260/472 (55%), Gaps = 7/472 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A I G F +DT GI Sbjct: 1 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ LAI EA ++LF++D++AG+ P D AI LR + P +V+NK Sbjct: 61 -DGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGT-SELHSVIFKIFKQKYPNHPLEMIENNK 179 D + + YSL EI I+A H G S L V+ + P E+ E+ + Sbjct: 120 TDGLDPDQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHVLLPWMEDLAPQE--EVDEDAE 177 Query: 180 R-NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 + +EN E + S P+++A+VGRPNVGKSTL NR+LG R++ G T Sbjct: 178 YWAQFEAEENGEEEEEDDFDPQSLPIKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTT 237 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RDS+ I + DTAG+RK +IT+++E+ +V K++Q++ ++++DA Sbjct: 238 RDSIYIPMERDGREYVLIDTAGVRKRGKITDAVEKFSVIKTLQAIEDANVVMLVIDAREG 297 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 QDL ++ + N+G ++V+ +NKWD +S ++ + ++ L I ++ IS Sbjct: 298 ISDQDLSLLGFILNSGRSLVIVVNKWDGLSQEVK--EQVKETLDFRLGFIDFARVHFISA 355 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 G G+ +L SV E R+ TS L + + PP + R +LKY Sbjct: 356 LHGSGVGNLFESVREAYDSSTRRVGTSMLTRIMTMAVEDHQPPLVRGRRVKLKYAHAGGY 415 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I +P+SYKRYL+N R + + G PIR+ F+ +NPY K Sbjct: 416 NPPIVVIHGNQVKDLPDSYKRYLMNYFRKSLDVMGSPIRIQFKEGENPYANK 467 >gi|146293744|ref|YP_001184168.1| GTP-binding protein EngA [Shewanella putrefaciens CN-32] gi|166225857|sp|A4Y8T6|DER_SHEPC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|145565434|gb|ABP76369.1| small GTP-binding protein [Shewanella putrefaciens CN-32] gi|319427118|gb|ADV55192.1| ribosome-associated GTPase EngA [Shewanella putrefaciens 200] Length = 488 Score = 280 bits (715), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 159/472 (33%), Positives = 261/472 (55%), Gaps = 11/472 (2%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A ++G F +VDT GI Sbjct: 1 MIPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAFLSGYEFIVVDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG I +M +Q+ AI EA ++LF+ D++AG+T D +I LR + +V+NK Sbjct: 61 -DGTEEGIETKMAEQSLAAIEEADVVLFMTDARAGLTAADLSIAQHLRSREKTTFVVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D A E +SL E+ +++A G + + + + IE Sbjct: 120 VDGIDADSACAEFWSLGLGEVYQMAASQGRGVTNMIEYALTPYAEAMG------IERQGE 173 Query: 181 NEESPKENITSE-GKSSVKNISK-PLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 E + T E ++ K + P+++A++G+PNVGKSTL NR+LG R++ + G T Sbjct: 174 EEVVDERQYTEEEAEAEQKRLQDLPIKLAIIGKPNVGKSTLTNRILGEERVVVYDEPGTT 233 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RDS+ I + I DTAG+R+ S++ + +E+ +V K++++V ++++DA Sbjct: 234 RDSIYIPMEREGREYVIIDTAGVRRRSKVHQVIEKFSVIKTLKAVEDANVVLLIIDAREG 293 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 +QDL ++ N G A+V+A+NKWD + + ++++ + L I I+ IS Sbjct: 294 VAEQDLGLLGFALNAGRALVIAVNKWDGIDQGIK--DRVKSELDRRLGFIDFARIHFISA 351 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 G G+ L S+ E R++TS L +Q +Q + PP + R +LKY Sbjct: 352 LHGTGVGHLFESIEEAYDSATRRVSTSMLTRIMQMSQDDHQPPLVNGRRVKLKYAHAGGY 411 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I +++P+SYKRY++N R + + G PI++ FQ NP+ K Sbjct: 412 NPPIVVIHGNQVSRLPDSYKRYMMNYFRRSLKVVGTPIQLRFQEGDNPFENK 463 >gi|238763554|ref|ZP_04624515.1| GTP-binding protein engA [Yersinia kristensenii ATCC 33638] gi|238698186|gb|EEP90942.1| GTP-binding protein engA [Yersinia kristensenii ATCC 33638] Length = 494 Score = 280 bits (715), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 167/478 (34%), Positives = 262/478 (54%), Gaps = 15/478 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI IA+VG PNVGKSTLFNRL + A+V + PG+TRDR YG+A + G F ++DT GI Sbjct: 1 MIPVIALVGRPNVGKSTLFNRLTHTRDALVADFPGLTRDRKYGRAEVEGHEFIVIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M Q+ LAI EA ++LF++D++AG+ P D I LR + +V+NK Sbjct: 61 -DGTEDGVETKMAGQSLLAIEEADIVLFMVDARAGLMPADQGIAQHLRSREKATFLVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL-HSVIFKIFKQKYPNHPLEMIENNK 179 D A + YSL E+ I+A H G ++L V+ + P L E N Sbjct: 120 TDGIDADTAAADFYSLGLGEVHAIAASHGRGVTQLIEDVMAPYMDAEEPEVELTDEEANA 179 Query: 180 R---NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSG 236 +E+ ++ I + + + P+++A+VGRPNVGKSTL NR+LG +R++ G Sbjct: 180 AYWAAQEADEDEIPEDEEDDFDPRTLPIKLAIVGRPNVGKSTLTNRILGEDRVVVYDLPG 239 Query: 237 ITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDAT 296 TRDS+ I + DTAG+RK +ITE++E+ +V K++Q++ ++++DA Sbjct: 240 TTRDSIYIPMTRDEREYILIDTAGVRKRGKITETVEKFSVIKTLQAIEDSNVVLLVIDAR 299 Query: 297 IPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNL----LQDLRTKAIKNLPQIGDIY 352 QDL ++ + N+G ++V+A+NKWD ++++ + DLR L + Sbjct: 300 DGISDQDLSLLGFILNSGRSLVIAVNKWDGMTEEARAQVKDMLDLR------LGFVDFAR 353 Query: 353 INTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKY 412 I+ IS G G+ +L S+ E R+ TS L +Q + + PP + R +LKY Sbjct: 354 IHFISALHGSGVGNLFESIQEAYDCSTKRVGTSLLTRIMQMAEEDHQPPLVRGRRVKLKY 413 Query: 413 ITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I + +SYKRYL+N R + + G PIR+ F+ +NP+ K Sbjct: 414 AHAGGYNPPIVVIHGNQVTDLSDSYKRYLMNYFRRSLKVMGTPIRIQFKEGENPFAGK 471 >gi|114562298|ref|YP_749811.1| GTP-binding protein EngA [Shewanella frigidimarina NCIMB 400] gi|122300418|sp|Q085U2|DER_SHEFN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|114333591|gb|ABI70973.1| small GTP-binding protein [Shewanella frigidimarina NCIMB 400] Length = 488 Score = 280 bits (715), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 160/467 (34%), Positives = 263/467 (56%), Gaps = 6/467 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A + G F +VDT GI Sbjct: 1 MIPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAFLAGYEFIVVDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG I +M +Q+ AI EA ++LF+ D++AG+T D AI LR ++ +V+NK Sbjct: 61 -DGSEEGIETKMAEQSLAAIEEADVVLFMTDARAGMTAADLAIAQHLRSRDKVTFVVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D A E +SL E+ +++A G + + + + E+ E ++ Sbjct: 120 VDGIDADSACGEFWSLGLGEVYQMAAAQGRGVTNMIDYALTPYAEAM-GIVRELDEEGEQ 178 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 E E + ++N+ P+++A++G+PNVGKSTLINR+LG R++ + G TRD Sbjct: 179 VEREYTEEEAEAEQERLQNL--PIKLAIIGKPNVGKSTLINRILGEERVVVYDEPGTTRD 236 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ I + + + DTAG+R+ S++ E +E+ +V K++++V ++++DA Sbjct: 237 SIYIPMSREGREYVLIDTAGVRRRSKVNEVIEKFSVIKTLKAVEDANVVLLVIDAREGIA 296 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 +QDL ++ N G A+V+A+NKWD + K+ ++++ + L I I+ IS Sbjct: 297 EQDLGLLGFTLNAGRALVIAINKWDGIDQKVK--DRVKSELDRRLGFIDFARIHFISALH 354 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G G+ L S+ E R++TS L +Q +Q + PP + R +LKY +P Sbjct: 355 GTGVGHLYESIEEAYDSATRRVSTSMLTRVMQMSQDDHQPPLVNGRRVKLKYAHAGGYNP 414 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 P +I K+P+SYKRY++N R + + G PI++ F NP+ Sbjct: 415 PIVVIHGNQVKKLPDSYKRYMMNYFRRSLKVVGTPIQLRFHEGANPF 461 >gi|285018364|ref|YP_003376075.1| GTP-binding protein enga [Xanthomonas albilineans GPE PC73] gi|283473582|emb|CBA16085.1| probable gtp-binding protein enga [Xanthomonas albilineans] Length = 465 Score = 280 bits (715), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 162/472 (34%), Positives = 252/472 (53%), Gaps = 31/472 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIIN-GVIFNIVDTAG 59 M+ +A+VG PNVGKSTLFN L + + A+V + PG+TRDR YG + F IVDT G Sbjct: 1 MLPLVALVGRPNVGKSTLFNALTRSRDALVHDQPGVTRDRHYGVCRLQPETPFVIVDTGG 60 Query: 60 IADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 I+ G+ +A Q A EA L+LF++D + G + D I S+LRK P I++ N Sbjct: 61 IS-GEEEGLAGATASQARAAAGEADLVLFVVDGREGASSLDDEILSWLRKLARPTILLIN 119 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNK 179 K+D + E E + +SA H G +L + ++ L+ Sbjct: 120 KIDGTDEDQVRAEFARYGLGEAIAVSAAHRQGIDDLLDHVLARLPEEGAGETLD------ 173 Query: 180 RNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITR 239 T G+ +RIA VGRPNVGKSTL+NRLLG R++ G TR Sbjct: 174 ----------TDPGR---------MRIAFVGRPNVGKSTLVNRLLGEERMIASDVPGTTR 214 Query: 240 DSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPF 299 DS+++ + P + DTAG+R+ R+ E++E+ +V K++Q++ CE ++LLDA+ Sbjct: 215 DSIAVDLERDDRPYRLIDTAGLRRRGRVEEAVEKFSVFKTLQAIEQCEVAVLLLDASEGV 274 Query: 300 EKQDLRIVDSVFNTGHAVVLALNKWDMVSD-KLNLLQDLRTKAIKNLPQIGDIYINTISG 358 QD ++ ++ + G A+V+A+NKWD ++D + + L ++ + +P + IS Sbjct: 275 TDQDASVLGAILDAGRALVVAVNKWDGLTDYQREQAEALLSRKLGFVPWAEAV---RISA 331 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 + G GL +L ++ + +TS +N L+ NPPP+I ++L+Y+ S Sbjct: 332 KHGSGLRELFRAIHNAHASAVREFSTSEVNQALEVAYESNPPPSIRGHVSKLRYVHPGGS 391 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP+F++ T +PESYKRYL N R F L G P+R F+ NPY K Sbjct: 392 NPPTFIVHGTRLKVLPESYKRYLENFFRKRFKLVGTPVRFMFREGANPYEGK 443 >gi|331643131|ref|ZP_08344266.1| ribosome-associated GTPase EngA [Escherichia coli H736] gi|331653939|ref|ZP_08354940.1| ribosome-associated GTPase EngA [Escherichia coli M718] gi|331678502|ref|ZP_08379177.1| ribosome-associated GTPase EngA [Escherichia coli H591] gi|332278336|ref|ZP_08390749.1| conserved hypothetical protein [Shigella sp. D9] gi|25328223|pir||E91050 probable GTP-binding factor [imported] - Escherichia coli (strain O157:H7, substrain RIMD 0509952) gi|25328252|pir||A85895 probable GTP-binding factor Z3774 [imported] - Escherichia coli (strain O157:H7, substrain EDL933) gi|12516902|gb|AAG57621.1|AE005480_8 putative GTP-binding factor [Escherichia coli O157:H7 str. EDL933] gi|13362843|dbj|BAB36796.1| putative GTP-binding factor [Escherichia coli O157:H7 str. Sakai] gi|209763418|gb|ACI80021.1| putative GTP-binding factor [Escherichia coli] gi|209763420|gb|ACI80022.1| putative GTP-binding factor [Escherichia coli] gi|209763422|gb|ACI80023.1| putative GTP-binding factor [Escherichia coli] gi|209763426|gb|ACI80025.1| putative GTP-binding factor [Escherichia coli] gi|331039929|gb|EGI12149.1| ribosome-associated GTPase EngA [Escherichia coli H736] gi|331048788|gb|EGI20864.1| ribosome-associated GTPase EngA [Escherichia coli M718] gi|331074962|gb|EGI46282.1| ribosome-associated GTPase EngA [Escherichia coli H591] gi|332100688|gb|EGJ04034.1| conserved hypothetical protein [Shigella sp. D9] Length = 503 Score = 280 bits (715), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 168/472 (35%), Positives = 260/472 (55%), Gaps = 7/472 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A I G F +DT GI Sbjct: 14 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGI 73 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ LAI EA ++LF++D++AG+ P D AI LR + P +V+NK Sbjct: 74 -DGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANK 132 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGT-SELHSVIFKIFKQKYPNHPLEMIENNK 179 D + + YSL EI I+A H G S L V+ + P E+ E+ + Sbjct: 133 TDGLDPDQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHVLLPWMEDLAPQE--EVDEDAE 190 Query: 180 R-NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 + +EN E + S P+++A+VGRPNVGKSTL NR+LG R++ G T Sbjct: 191 YWAQFEAEENGEEEEEDDFDPQSLPIKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTT 250 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RDS+ I + DTAG+RK +IT+++E+ +V K++Q++ ++++DA Sbjct: 251 RDSIYIPMERDGREYVLIDTAGVRKRGKITDAVEKFSVIKTLQAIEDANVVMLVIDAREG 310 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 QDL ++ + N+G ++V+ +NKWD +S ++ + ++ L I ++ IS Sbjct: 311 ISDQDLSLLGFILNSGRSLVIVVNKWDGLSQEVK--EQVKETLDFRLGFIDFARVHFISA 368 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 G G+ +L SV E R+ TS L + + PP + R +LKY Sbjct: 369 LHGSGVGNLFESVREAYDSSTRRVGTSMLTRIMTMAVEDHQPPLVRGRRVKLKYAHAGGY 428 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I +P+SYKRYL+N R + + G PIR+ F+ +NPY K Sbjct: 429 NPPIVVIHGNQVKDLPDSYKRYLMNYFRKSLDVMGSPIRIQFKEGENPYANK 480 >gi|259907722|ref|YP_002648078.1| GTP-binding protein EngA [Erwinia pyrifoliae Ep1/96] gi|224963344|emb|CAX54829.1| GTP-binding protein [Erwinia pyrifoliae Ep1/96] gi|283477576|emb|CAY73492.1| GTP-binding protein engA [Erwinia pyrifoliae DSM 12163] gi|310764770|gb|ADP09720.1| GTP-binding protein EngA [Erwinia sp. Ejp617] Length = 498 Score = 280 bits (715), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 170/484 (35%), Positives = 261/484 (53%), Gaps = 24/484 (4%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A I G F +DT GI Sbjct: 1 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ LAI EA ++LF++D++AG+ P D AI LR + P IV+NK Sbjct: 61 -DGNEEGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADVAIAKHLRSRQKPTFIVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLG-TSELHSVIFKIFKQKYPNHPLEMIENNK 179 D A + +SL EI I+A H G TS L V+ + P L E N+ Sbjct: 120 TDGLDADSAVVDFWSLGLGEIHPIAASHGRGVTSLLELVLLPWMDEVAPERELTEEEENE 179 Query: 180 -------------RNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGY 226 EE+ +E+ + P+++A+VGRPNVGKSTL NR+LG Sbjct: 180 AYWAALAAKEAKANGEETAEED-------DFNPLDLPIKLAIVGRPNVGKSTLTNRILGE 232 Query: 227 NRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTC 286 +R++ G TRDS+ I + DTAG+RK ++TE++E+ +V K+++++ Sbjct: 233 DRVVVFDMPGTTRDSIYIPMERDGREYILIDTAGVRKRGKVTETVEKFSVIKTLKAIEDA 292 Query: 287 ETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLP 346 ++++DA QDL ++ + N+G ++V+ +NKWD +S ++ +++ L Sbjct: 293 NVVMLVIDAHEGISDQDLSLLGFILNSGRSLVIVVNKWDGLSQEVR--DEVKEALDYRLG 350 Query: 347 QIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNR 406 I I+ IS G G+ +L SV E R+ TS L + + PP + +R Sbjct: 351 FIDFARIHFISALHGSGVGNLFESVTEAYDCSTRRVNTSMLTRIMHMAADDHQPPLVRSR 410 Query: 407 YNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNP 466 +LKY +PP +I +P+SYKRYL+N R + + G PIR+ F+ NP Sbjct: 411 RVKLKYAHAGGYNPPIVVIHGNQVKDLPDSYKRYLMNYFRRSLDIMGTPIRIQFKEGDNP 470 Query: 467 YIKK 470 Y K Sbjct: 471 YEGK 474 >gi|161986480|ref|YP_311456.2| GTP-binding protein EngA [Shigella sonnei Ss046] gi|323169045|gb|EFZ54722.1| small GTP-binding domain protein [Shigella sonnei 53G] Length = 490 Score = 280 bits (715), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 168/472 (35%), Positives = 260/472 (55%), Gaps = 7/472 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A I G F +DT GI Sbjct: 1 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ LAI EA ++LF++D++AG+ P D AI LR + P +V+NK Sbjct: 61 -DGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGT-SELHSVIFKIFKQKYPNHPLEMIENNK 179 D + + YSL EI I+A H G S L V+ + P E+ E+ + Sbjct: 120 TDGLDPDQAVVDFYSLGLGEIYPIAASHGRGVLSLLERVLLPWMEDLAPQE--EVDEDAE 177 Query: 180 R-NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 + +EN E + S P+++A+VGRPNVGKSTL NR+LG R++ G T Sbjct: 178 YWAQFEAEENGEEEEEDDFDPQSLPIKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTT 237 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RDS+ I + DTAG+RK +IT+++E+ +V K++Q++ ++++DA Sbjct: 238 RDSIYIPMERDGREYVLIDTAGVRKRGKITDAVEKFSVIKTLQAIEDTNVVMLVIDAREG 297 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 QDL ++ + N+G ++V+ +NKWD +S ++ + ++ L I ++ IS Sbjct: 298 ISDQDLSLLGFILNSGRSLVIVVNKWDGLSQEVK--EQVKETLDFRLGFIDFARVHFISA 355 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 G G+ +L SV E R+ TS L + + PP + R +LKY Sbjct: 356 LHGSGVGNLFESVREAYDSSTRRVGTSMLTRIMTMAVEDHQPPLVRGRRVKLKYAHAGGY 415 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I +P+SYKRYL+N R + + G PIR+ F+ +NPY K Sbjct: 416 NPPIVVIHGNQVKDLPDSYKRYLMNYFRKSLDVMGSPIRIQFKEGENPYANK 467 >gi|194432132|ref|ZP_03064421.1| ribosome-associated GTPase EngA [Shigella dysenteriae 1012] gi|194419661|gb|EDX35741.1| ribosome-associated GTPase EngA [Shigella dysenteriae 1012] gi|332089695|gb|EGI94796.1| small GTP-binding domain protein [Shigella dysenteriae 155-74] Length = 490 Score = 279 bits (714), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 168/472 (35%), Positives = 260/472 (55%), Gaps = 7/472 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A I G F +DT GI Sbjct: 1 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ LAI EA ++LF++D++AG+ P D AI LR + P +V+NK Sbjct: 61 -DGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGT-SELHSVIFKIFKQKYPNHPLEMIENNK 179 D + + YSL EI I+A H G S L V+ + P E+ E+ + Sbjct: 120 TDGLDPDQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHVLLPWMEDLAPQE--EVDEDAE 177 Query: 180 R-NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 + +EN E + S P+++A+VGRPNVGKSTL NR+LG R++ G T Sbjct: 178 YWAQFEAEENGEEEEEDDFDPQSLPIKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTT 237 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RDS+ I + DTAG+RK +IT+++E+ +V K++Q++ ++++DA Sbjct: 238 RDSIYIPMERDGREYVLIDTAGVRKRGKITDAVEKFSVIKTLQAIEDANVVMLVIDAREG 297 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 QDL ++ + N+G ++V+ +NKWD +S ++ + ++ L I ++ IS Sbjct: 298 ISDQDLSLLGFILNSGRSLVIVVNKWDGLSQEVK--EQVKETLDFRLGFIDFARVHFISA 355 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 G G+ +L SV E R+ TS L + + PP + R +LKY Sbjct: 356 LHGSGVGNLFESVREAYDSSTRRVGTSMLTRIMTMAVEDHQPPLLRGRRVKLKYAHAGGY 415 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I +P+SYKRYL+N R + + G PIR+ F+ +NPY K Sbjct: 416 NPPIVVIHGNQVKDLPDSYKRYLMNYFRKSLDVMGSPIRIQFKEGENPYANK 467 >gi|86134521|ref|ZP_01053103.1| GTP-binding protein EngA [Polaribacter sp. MED152] gi|85821384|gb|EAQ42531.1| GTP-binding protein EngA [Polaribacter sp. MED152] Length = 436 Score = 279 bits (714), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 163/457 (35%), Positives = 251/457 (54%), Gaps = 27/457 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTLFNRLV+++ A+V + G+TRDR YG++ NG F+++DT G A G Sbjct: 5 IAIVGRPNVGKSTLFNRLVQRREAIVDSVSGVTRDRHYGKSDWNGKEFSVIDTGGYAIGS 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +++ Q +LAI+EA LI+F++D + GITP D + LRK PI NK+D Sbjct: 65 DDIFEEEIRKQVKLAIDEADLIVFVVDVEDGITPMDAEVAKLLRKVKKPIFTAVNKVDNA 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + E Y+L + IS+ + GT EL I +K P P E+ + +E Sbjct: 125 MRDADAVEFYNLGLGDYHTISSINGSGTGELLDAI----AEKIP-APEEV---DLEKKEL 176 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P R AVVGRPN GKS+ IN L+G +R + + +G TRDS+ Sbjct: 177 P-------------------RFAVVGRPNAGKSSFINALIGEDRNIVTNIAGTTRDSIDT 217 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 +N + DTAG+RK SR+ E LE +V ++++S+ + I+++DAT FE QD Sbjct: 218 KYNRFGFDFNLVDTAGIRKKSRVKEDLEFYSVMRAVRSIEYSDVIILVIDATRGFEGQDQ 277 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 I VV+ +NKWD+V + N ++D K + + D+ I IS T + L Sbjct: 278 NIFWLAEKNRKGVVILINKWDLVEKETNTMRDYEAKVKEQIAPFTDVPIVFISALTKQRL 337 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 + + +E+ + K RI TS N + + PPP I ++ ++KY Q+ + P F Sbjct: 338 FKAIETAVEVFENRKNRIPTSKFNDVMLEVVKNYPPPAIKGKFVKIKYCMQLPTQTPQFA 397 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 FC P + + Y+R++ N+LR ++ SG+PI + F+ Sbjct: 398 FFCNLPQYVRDPYRRFVENKLREIYNFSGVPITIYFR 434 >gi|148827277|ref|YP_001292030.1| GTP-binding protein EngA [Haemophilus influenzae PittGG] gi|148718519|gb|ABQ99646.1| GTP-binding protein EngA [Haemophilus influenzae PittGG] Length = 504 Score = 279 bits (714), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 169/483 (34%), Positives = 268/483 (55%), Gaps = 31/483 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG A I G F ++DT GI DG Sbjct: 6 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHIAGYDFIVIDTGGI-DGT 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPI-IIVSNKMDT 123 + ++M +Q+ LAI+EA ++LFL+D++AG+T D I ++LR++ I ++V+NK D Sbjct: 65 EEGVEEKMAEQSLLAIDEADIVLFLVDARAGLTAADIGIANYLRQRQNKITVLVANKTDG 124 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 A + E Y L EI +I+A G ++L + F +K N EN++ +EE Sbjct: 125 IDADSHCAEFYQLGLGEIEQIAASQGRGVTQLMEQVLAPFAEKMENAD----ENDRTSEE 180 Query: 184 SPKE-----NITSEGKSSV----------KNISKPLRIAVVGRPNVGKSTLINRLLGYNR 228 E + SE +++ + K ++IA+VGRPNVGKSTL NR+LG +R Sbjct: 181 EQDEWEQEFDFDSEEDTALIDDALDEELEEEQDKNIKIAIVGRPNVGKSTLTNRILGEDR 240 Query: 229 LLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCET 288 ++ G TRDS+ I + DTAG+RK ++ ++E+ +V K++Q+++ Sbjct: 241 VVVFDMPGTTRDSIYIPMERDGQQYTLIDTAGVRKRGKVHLAVEKFSVIKTLQAIQDANV 300 Query: 289 TIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQI 348 ++ +DA QDL ++ + N G ++V+ +NKWD L QD++ + L + Sbjct: 301 VLLTIDARENISDQDLSLLGFILNAGRSLVIVVNKWD------GLDQDVKDRVKSELDRR 354 Query: 349 GDIY----INTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIF 404 D ++ IS G G+ +L S+ E ++TTS L L+ ++ PP I Sbjct: 355 LDFIDFARVHFISALHGSGVGNLFDSIKEAYACATQKMTTSLLTRILKMATDEHQPPMIG 414 Query: 405 NRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 R +LKY +PP ++ +K+P+SYKRYL N R + + G PIR+ FQ Sbjct: 415 GRRIKLKYAHPGGYNPPIIVVHGNQMDKLPDSYKRYLSNYYRKSLKIIGSPIRLLFQEGS 474 Query: 465 NPY 467 NP+ Sbjct: 475 NPF 477 >gi|73856514|gb|AAZ89221.1| putative GTP-binding factor [Shigella sonnei Ss046] Length = 503 Score = 279 bits (714), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 168/472 (35%), Positives = 260/472 (55%), Gaps = 7/472 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A I G F +DT GI Sbjct: 14 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGI 73 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ LAI EA ++LF++D++AG+ P D AI LR + P +V+NK Sbjct: 74 -DGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANK 132 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGT-SELHSVIFKIFKQKYPNHPLEMIENNK 179 D + + YSL EI I+A H G S L V+ + P E+ E+ + Sbjct: 133 TDGLDPDQAVVDFYSLGLGEIYPIAASHGRGVLSLLERVLLPWMEDLAPQE--EVDEDAE 190 Query: 180 R-NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 + +EN E + S P+++A+VGRPNVGKSTL NR+LG R++ G T Sbjct: 191 YWAQFEAEENGEEEEEDDFDPQSLPIKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTT 250 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RDS+ I + DTAG+RK +IT+++E+ +V K++Q++ ++++DA Sbjct: 251 RDSIYIPMERDGREYVLIDTAGVRKRGKITDAVEKFSVIKTLQAIEDTNVVMLVIDAREG 310 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 QDL ++ + N+G ++V+ +NKWD +S ++ + ++ L I ++ IS Sbjct: 311 ISDQDLSLLGFILNSGRSLVIVVNKWDGLSQEVK--EQVKETLDFRLGFIDFARVHFISA 368 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 G G+ +L SV E R+ TS L + + PP + R +LKY Sbjct: 369 LHGSGVGNLFESVREAYDSSTRRVGTSMLTRIMTMAVEDHQPPLVRGRRVKLKYAHAGGY 428 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I +P+SYKRYL+N R + + G PIR+ F+ +NPY K Sbjct: 429 NPPIVVIHGNQVKDLPDSYKRYLMNYFRKSLDVMGSPIRIQFKEGENPYANK 480 >gi|327403775|ref|YP_004344613.1| GTP-binding protein engA [Fluviicola taffensis DSM 16823] gi|327319283|gb|AEA43775.1| GTP-binding protein engA [Fluviicola taffensis DSM 16823] Length = 436 Score = 279 bits (714), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 155/457 (33%), Positives = 246/457 (53%), Gaps = 27/457 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTLFNRL + A+V G+TRDR+YG+ NG+ F+++DT G G Sbjct: 5 IAIVGRPNVGKSTLFNRLTESNHAIVKEISGVTRDRIYGRGEWNGIPFSVIDTGGYVRGS 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 ++ Q E+AI+EA++ILF++D+ GI D + LRK +++++NK+D Sbjct: 65 EDIFEGEIRKQVEIAIDEANVILFVVDATTGIVDLDETVAKILRKSKKKVLVIANKVDNN 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 E +S E+ ++SA + GT E+ + K F+++ P R EE Sbjct: 125 DRVGMSAEFWSFGLGEVFDLSAANGSGTGEILDEVVKYFEKEDP-----------RGEEE 173 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 + IAVVG+PNVGKS++IN G R + SG TRDS+ Sbjct: 174 ----------------ANLPHIAVVGKPNVGKSSMINAFTGEERNIVTDISGTTRDSIDT 217 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + DTAG+RK +++TE +E +V +S++++ + I ++DAT +KQDL Sbjct: 218 RYKAFGFDFMLIDTAGIRKKAKVTEDIEYYSVLRSVRTIENSDICIFMIDATEGIQKQDL 277 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 I + VV+ +NKWD+V + K ++L D+ I S T + + Sbjct: 278 TIYYMIEKNHKGVVVLVNKWDLVEKDTMTAVEYEKKLREDLAPYNDVPIIFTSALTKQRI 337 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 + +E+ + +I+TS LN L NPPP++ +Y ++KY+ Q+ + P+F Sbjct: 338 HKALEKAMEVFENRTRKISTSELNDKLLPIIDSNPPPSLKGKYVKIKYVQQLPTHAPAFA 397 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 FC P IP+SYKR+L NRLR ++ G+P+R+ F+ Sbjct: 398 FFCNLPQYIPDSYKRFLENRLRDMYNFEGVPVRIYFR 434 >gi|152995389|ref|YP_001340224.1| small GTP-binding protein [Marinomonas sp. MWYL1] gi|189037150|sp|A6VV10|DER_MARMS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|150836313|gb|ABR70289.1| small GTP-binding protein [Marinomonas sp. MWYL1] Length = 445 Score = 279 bits (714), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 164/470 (34%), Positives = 268/470 (57%), Gaps = 26/470 (5%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI IA+VG PNVGKSTLFN+L + + A+V ++PG+TRDR YG + F ++DT GI Sbjct: 1 MIPVIALVGRPNVGKSTLFNQLTRSRDALVADYPGLTRDRKYGDGKLGEHEFIVIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + G I ++M Q+ LAI EA ++LFL+D + G+ P D I S LR+ N + +V NK Sbjct: 61 S-GDEQGIDEKMARQSLLAIEEADVVLFLVDGRHGLNPADEMIASHLRRSNKQVSLVVNK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 D + YSL F E+ I+A H G +H +I K+ M+ +R Sbjct: 120 TDGINEDIALADFYSLGFGELHPIAASHGKG---VHVLIDKV-----------MLPFAER 165 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 EE+ K I+ E S+ +RI VVGRPNVGKSTL+NR+LG +R++ G TRD Sbjct: 166 VEEA-KNQISIE--------SRGIRIGVVGRPNVGKSTLVNRMLGEDRVVVYDMPGTTRD 216 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 SV I + + + DTAG+R+ + E++E+ ++ K++Q+++ IV++D+ Sbjct: 217 SVYIPYVRNDKEYTLIDTAGIRRRKHVKEAVEKFSIVKALQAIQDANVVIVVIDSHENLV 276 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 +QDL ++ V + G V++A+NKWD + K + + ++++ + L + ++ IS Sbjct: 277 EQDLHMIGYVLDAGRGVIIAINKWDGL--KKDDREHIKSEVERRLGFVPYAKVHYISALH 334 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G G+ DL ++ + + TT+ L L+ + ++ PP + +R +L+Y Q S+P Sbjct: 335 GTGVGDLYDTIESTYESCYAKWTTNRLTRILEDSIAEHQPPMVNSRRIKLRYAHQGGSNP 394 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 P ++ + +P SYKRYL N+ R +++G PI F+S++NP+ K Sbjct: 395 PRIVVHGNQTDSLPGSYKRYLENKFRTVLNITGTPIIFEFKSAENPFAPK 444 >gi|269123837|ref|YP_003306414.1| small GTP-binding protein [Streptobacillus moniliformis DSM 12112] gi|268315163|gb|ACZ01537.1| small GTP-binding protein [Streptobacillus moniliformis DSM 12112] Length = 438 Score = 279 bits (713), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 158/464 (34%), Positives = 254/464 (54%), Gaps = 31/464 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFN+L+ ++++V + G+TRDRLY + +G F +VDT G+ Sbjct: 3 VAIVGRPNVGKSTLFNKLIGDRLSIVKDEIGVTRDRLYRETEWSGKKFLLVDTGGLEPRS 62 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N + ++ DQ +AI+EA I+FL+D KAGIT D I LRK++ +I+ NK+D Sbjct: 63 NDFMMNKIKDQARVAIDEADSIIFLVDGKAGITAIDEDIAKILRKEDKKVIVAVNKIDNY 122 Query: 125 IAQRN-FYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 I ++ YE Y L F+++V ISAEH + +L + +K+P NK E Sbjct: 123 IKDKDVMYEFYGLGFEDVVPISAEHKVNLGDLLDLAV----EKFPTV-------NKEEES 171 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 L IAV+GRPN GKS+ +N++L R + +G TRDS+ Sbjct: 172 G-------------------LSIAVLGRPNAGKSSFVNKILNKERSIVSDIAGTTRDSID 212 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 S+N+ I DTAG+R+ S++ + +E +V +++++++ +++LDAT +QD Sbjct: 213 SSFNYDGQKYTIIDTAGIRRKSKVEDDIEYYSVLRAVKAIQRANVCVLMLDATELLTEQD 272 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 RI +F +++A+NKWD++ +++ ++P + + TIS TG+ Sbjct: 273 KRIAGLIFEEKKPLIIAINKWDLIEKNNKTVKEFVDLVRADMPFLDYAPVVTISALTGKR 332 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 +++ V I++ + +I+T LN L++ +NP PT R ++ Y TQI +PP F Sbjct: 333 TINIIDQVKMIDEEYNKKISTGLLNQILEEMIAKNPVPTRKGRAIKINYGTQIGVAPPKF 392 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 + F P+ I SYKRY+ N LR F G PI + F Y Sbjct: 393 VFFSNNPDLIHFSYKRYIENNLREYFGFEGSPIEIIFNKKNTGY 436 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 66/123 (53%), Gaps = 6/123 (4%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 +IA++G PN GKS+ N+++ K+ ++V + G TRD + +G + I+DTAGI Sbjct: 174 SIAVLGRPNAGKSSFVNKILNKERSIVSDIAGTTRDSIDSSFNYDGQKYTIIDTAGIR-- 231 Query: 64 KNCSIAKQMNDQTEL----AINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 + + + + L AI A++ + ++D+ +T D I + ++ P+II N Sbjct: 232 RKSKVEDDIEYYSVLRAVKAIQRANVCVLMLDATELLTEQDKRIAGLIFEEKKPLIIAIN 291 Query: 120 KMD 122 K D Sbjct: 292 KWD 294 >gi|301123827|ref|XP_002909640.1| ras family GTPase, putative [Phytophthora infestans T30-4] gi|262100402|gb|EEY58454.1| ras family GTPase, putative [Phytophthora infestans T30-4] Length = 503 Score = 279 bits (713), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 161/475 (33%), Positives = 263/475 (55%), Gaps = 56/475 (11%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG NVGKSTLFNRL K + A+V N PG TRDR Y +A + G+ ++VDT G+ D Sbjct: 44 IALVGRTNVGKSTLFNRLTKTRSAIVHNVPGTTRDRRYKRATLAGLELDVVDTGGLEDAP 103 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKN--IPIIIVSNKM- 121 + ++ + M +QT LA++EA L+ FL+D + GITP D +LRK+N PI +V+NK+ Sbjct: 104 SGTLEEGMLEQTRLAVHEADLVFFLVDGRQGITPVDKHFARWLRKENPQAPIHLVANKLE 163 Query: 122 -DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 D + + Y L + +SAEH G + L I Sbjct: 164 GDPERWEDELNDCYQLGMGGAIPLSAEHGEGITLLLDEIIP------------------- 204 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 S+ +++A+VGRPNVGKSTL+N+++ +R+LTG + Sbjct: 205 --------------------SRTIKLAIVGRPNVGKSTLLNKIVRNDRVLTGPEY----- 239 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRIT--ESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 + W + I++ DTAG+R+ + + +E +V+ S +++ + + +V++D + P Sbjct: 240 ---VPWTFHGRSIKLVDTAGIRRYGKRDHDDQIENLSVRDSFRAIDSAQVVVVVVDMSEP 296 Query: 299 -FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNL-LQDLRTKAIKNLPQIGDIYINTI 356 DL I V G A+VLA NK D+ ++L +Q ++ + +L Q+ + + I Sbjct: 297 KLIHMDLTIAQRVIEEGRALVLAANKSDLAGASVDLEMQRIQNELQDSLAQVRGVPVVPI 356 Query: 357 SGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQI 416 S TG G+ L+ VL+ + W R+TT LN WL+ +PPPT+ + +KY TQ+ Sbjct: 357 SALTGNGIKKLVPEVLKAYEKWDLRVTTGRLNRWLKAMARHHPPPTVKGKTLNVKYATQV 416 Query: 417 QSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK-NPYIKK 470 +S PP+F +F P+++PESY+R+L+++LR F + G+P R+ + +K NP+ K+ Sbjct: 417 KSRPPTFAVFVNKPSEVPESYQRFLLSQLREEFDMVGVPARLLLRGNKENPFEKR 471 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 33/108 (30%), Positives = 52/108 (48%), Gaps = 7/108 (6%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 LRIA+VGR NVGKSTL NRL + + G TRD +++ DT G+ Sbjct: 42 LRIALVGRTNVGKSTLFNRLTKTRSAIVHNVPGTTRDRRYKRATLAGLELDVVDTGGLED 101 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVF 311 + +LE+ ++++ +V + L+D +Q + VD F Sbjct: 102 AP--SGTLEEGMLEQTRLAVHEADLVFFLVDG-----RQGITPVDKHF 142 >gi|119775495|ref|YP_928235.1| GTP-binding protein EngA [Shewanella amazonensis SB2B] gi|166225853|sp|A1S859|DER_SHEAM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|119767995|gb|ABM00566.1| small GTP-binding protein domain [Shewanella amazonensis SB2B] Length = 488 Score = 279 bits (713), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 160/469 (34%), Positives = 262/469 (55%), Gaps = 10/469 (2%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI +A+VG PNVGKSTLFNRL + + A+V ++PG+TRDR YG+A ++G F +VDT GI Sbjct: 1 MIPVVALVGRPNVGKSTLFNRLTRTRDALVADYPGLTRDRKYGRAHLSGYEFIVVDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG I +M +Q+ AI EA ++LF+ D++AG+T D AI LR ++ +V+NK Sbjct: 61 -DGTEEGIETKMAEQSLAAIEEADVVLFMTDARAGLTAADLAIAQHLRSRDKITFVVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D A E + L E+ +++A G + L F + + ++ ++ Sbjct: 120 VDGIDADSACGEFWQLGLGEVYQMAAAQGRGVTGLVEYALAPFAE-----AMGLVRDDDG 174 Query: 181 NEESPKENITSEGKSSV--KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 + + N T E + + +P+++A++G+PNVGKSTL NR+LG R++ Q G T Sbjct: 175 EVVTDERNYTEEEAEAEQQRLAEQPIKLAIIGKPNVGKSTLTNRILGEERVVVYDQPGTT 234 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RDSV I + DTAG+R+ +R+ E +E+ +V K++++V ++++DA Sbjct: 235 RDSVYIPMERDGRNYVLIDTAGVRRRARVHEVIEKFSVIKTLKAVEDSNVVLLVIDAHEG 294 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 +QDL ++ V N+G A+VLA+NKWD + + ++T+ + L I I+ IS Sbjct: 295 IAEQDLGLLGFVLNSGRALVLAVNKWDGLDQDVK--DRVKTELDRRLGFIDFARIHFISA 352 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 G G+ L S+ E R++TS L +Q Q + PP + R +LKY Sbjct: 353 LHGTGVGHLFESIEEAYDSATRRVSTSMLTRIMQMAQDDHQPPMVNGRRVKLKYAHVGGY 412 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 +PP ++ +++P+SYKRY++N R + G PI++ F NP+ Sbjct: 413 NPPIVVVHGNQVSRLPDSYKRYMMNYYRRALKVVGTPIQLRFHEGDNPF 461 >gi|227887546|ref|ZP_04005351.1| GTP-binding protein [Escherichia coli 83972] gi|300981973|ref|ZP_07175819.1| ribosome-associated GTPase EngA [Escherichia coli MS 45-1] gi|300998067|ref|ZP_07181927.1| ribosome-associated GTPase EngA [Escherichia coli MS 200-1] gi|301047143|ref|ZP_07194239.1| ribosome-associated GTPase EngA [Escherichia coli MS 185-1] gi|227835896|gb|EEJ46362.1| GTP-binding protein [Escherichia coli 83972] gi|300300945|gb|EFJ57330.1| ribosome-associated GTPase EngA [Escherichia coli MS 185-1] gi|300304046|gb|EFJ58566.1| ribosome-associated GTPase EngA [Escherichia coli MS 200-1] gi|300408868|gb|EFJ92406.1| ribosome-associated GTPase EngA [Escherichia coli MS 45-1] gi|315292449|gb|EFU51801.1| ribosome-associated GTPase EngA [Escherichia coli MS 153-1] gi|324011217|gb|EGB80436.1| ribosome-associated GTPase EngA [Escherichia coli MS 60-1] Length = 499 Score = 279 bits (713), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 167/472 (35%), Positives = 260/472 (55%), Gaps = 7/472 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A I G F +DT GI Sbjct: 10 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGI 69 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ LAI EA ++LF++D++AG+ P D AI LR + P +V+NK Sbjct: 70 -DGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANK 128 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGT-SELHSVIFKIFKQKYPNHPLEMIENNK 179 D + + Y+L EI I+A H G S L V+ + P E+ E+ + Sbjct: 129 TDGLDPDQAVVDFYALGLGEIYPIAASHGRGVLSLLEHVLLPWMEDLAPQE--EVDEDAE 186 Query: 180 R-NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 + +EN E + S P+++A+VGRPNVGKSTL NR+LG R++ G T Sbjct: 187 YWAQFEAEENGEEEEEDDFDPQSLPIKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTT 246 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RDS+ I + DTAG+RK +IT+++E+ +V K++Q++ ++++DA Sbjct: 247 RDSIYIPMERDGREYVLIDTAGVRKRGKITDAVEKFSVIKTLQAIEDANVVMLVIDAREG 306 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 QDL ++ + N+G ++V+ +NKWD +S ++ + ++ L I ++ IS Sbjct: 307 ISDQDLSLLGFILNSGRSLVIVVNKWDGLSQEVK--EQVKETLDFRLGFIDFARVHFISA 364 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 G G+ +L SV E R+ TS L + + PP + R +LKY Sbjct: 365 LHGSGVGNLFESVREAYDSSTRRVGTSMLTRIMTMAVEDHQPPLVRGRRVKLKYAHAGGY 424 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I +P+SYKRYL+N R + + G PIR+ F+ +NPY K Sbjct: 425 NPPIVVIHGNQVKDLPDSYKRYLMNYFRKSLDVMGSPIRIQFKEGENPYANK 476 >gi|332534677|ref|ZP_08410508.1| GTP-binding protein EngA [Pseudoalteromonas haloplanktis ANT/505] gi|332035889|gb|EGI72371.1| GTP-binding protein EngA [Pseudoalteromonas haloplanktis ANT/505] Length = 476 Score = 279 bits (713), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 159/459 (34%), Positives = 253/459 (55%), Gaps = 12/459 (2%) Query: 13 VGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNCSIAKQM 72 +GKSTLFNRL + + A+V + PG+TRDR YGQA +G F +VDT GI DG I +M Sbjct: 1 MGKSTLFNRLTRTRDALVADFPGLTRDRKYGQASYDGYEFIVVDTGGI-DGSEEGIEIEM 59 Query: 73 NDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQRNFYE 132 DQ+ LAI EA ++LFL+D++ G+T D AI + LRK+ +V+NK D A N E Sbjct: 60 ADQSLLAIEEADIVLFLVDARVGMTVADQAIANHLRKQEKKCFVVANKTDGIDADSNCAE 119 Query: 133 IYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR----NEESPKEN 188 Y L EI I+A H G + L + + E+ +++ EE ++ Sbjct: 120 FYQLSLGEIHHIAAAHGRGITLLLEQTLQPLIAELAAQDEEVTGDDEELIDLYEEGEGDD 179 Query: 189 ITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNW 248 + + KP+++A++GRPNVGKSTL NR+LG +R++ G TRDS+ I Sbjct: 180 TDHQAFAD-----KPVKLAIIGRPNVGKSTLTNRILGEDRVIVYDMPGTTRDSIYIPMTR 234 Query: 249 KNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVD 308 + + DTAG+RK ++++ +E+ +V K++Q++ C ++++DA QDL ++ Sbjct: 235 NDKEYVLIDTAGVRKRKKVSDVVEKFSVIKTLQAIEDCNVVLLVVDARDGISDQDLSLLG 294 Query: 309 SVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLM 368 N+G ++V+A+NKWD + D + ++T+ + L I ++ IS G G+ L Sbjct: 295 FALNSGRSLVIAVNKWDGLDDYVK--DRIKTELDRRLGFIDFARLHFISALHGTGVGHLF 352 Query: 369 VSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFLIFCT 428 SV E + RI+T+ L + Q + PP + R +LKY +PP +I Sbjct: 353 ESVDEAYESATKRISTAMLRRIMDMAQADHQPPLVRGRRVKLKYAHAGGYNPPRIVIHGN 412 Query: 429 FPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 + +P+SYKRYL+N R + G PI++ F+ NP+ Sbjct: 413 QVHDLPDSYKRYLMNYYRKALKIMGTPIKIEFREGDNPF 451 Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 51/169 (30%), Positives = 85/169 (50%), Gaps = 9/169 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKSTL NR++ + +V + PG TRD +Y N + ++DTAG+ K Sbjct: 192 LAIIGRPNVGKSTLTNRILGEDRVIVYDMPGTTRDSIYIPMTRNDKEYVLIDTAGVRKRK 251 Query: 65 NCS--IAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 S + K +T AI + +++L ++D++ GI+ D ++ F ++I NK D Sbjct: 252 KVSDVVEKFSVIKTLQAIEDCNVVLLVVDARDGISDQDLSLLGFALNSGRSLVIAVNKWD 311 Query: 123 -------TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFK 164 RI + +DF + ISA H G L + + ++ Sbjct: 312 GLDDYVKDRIKTELDRRLGFIDFARLHFISALHGTGVGHLFESVDEAYE 360 >gi|242240151|ref|YP_002988332.1| GTP-binding protein EngA [Dickeya dadantii Ech703] gi|242132208|gb|ACS86510.1| small GTP-binding protein [Dickeya dadantii Ech703] Length = 494 Score = 279 bits (713), Expect = 8e-73, Method: Compositional matrix adjust. Identities = 168/474 (35%), Positives = 261/474 (55%), Gaps = 7/474 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A + G F I+DT GI Sbjct: 1 MIPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGHEFIIIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ AI EA ++LFL+D++ G+ P DHAI LR + +V+NK Sbjct: 61 -DGSEDGVETRMAEQSLQAIEEADIVLFLVDARDGLMPADHAIAQHLRTREKATFLVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLG-TSELHSVIFKIFKQKYPNHPLEMIENNK 179 +D + YSL F ++ I+A H G TS L S + P L E N Sbjct: 120 VDGIDIDTGIADFYSLGFGDVYPIAASHGRGVTSLLESALLPFVDAGEPERELTEEEENA 179 Query: 180 R---NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSG 236 + +E + E + +P+++A+VGRPNVGKSTL NR+LG +R++ G Sbjct: 180 AYWAEQLGEEEGESEEEDAFPVPADQPIKLAIVGRPNVGKSTLTNRILGEDRVVVYDMPG 239 Query: 237 ITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDAT 296 TRDS+ I + DTAG+RK +IT+++E+ +V K++Q++ ++++DA Sbjct: 240 TTRDSIYIPMERDEREYILIDTAGVRKRGKITDAVEKFSVIKTLQAIEDANVVLLVIDAR 299 Query: 297 IPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTI 356 QDL ++ + N+G ++V+ +NKWD +S ++ + ++ L I I+ I Sbjct: 300 EGISDQDLSLLGFILNSGRSLVIVVNKWDGLSQEIK--EQVKETLDLRLGFIDFARIHFI 357 Query: 357 SGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQI 416 S G G+ +L SV E + R+ T+ L +Q + PP + R +LKY Sbjct: 358 SALHGSGVGNLFESVDEAYECSTRRVGTAMLTRIMQMAVDDHQPPLVRGRRVKLKYAHAG 417 Query: 417 QSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I +P+SYKRYL+N R + + G PIR+ F+ +NPY K Sbjct: 418 GYNPPIVVIHGNQVKDLPDSYKRYLMNYYRRSLDVMGTPIRIQFKEGENPYAGK 471 >gi|209763424|gb|ACI80024.1| putative GTP-binding factor [Escherichia coli] Length = 503 Score = 279 bits (713), Expect = 8e-73, Method: Compositional matrix adjust. Identities = 170/476 (35%), Positives = 263/476 (55%), Gaps = 15/476 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A I G F +DT GI Sbjct: 14 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGI 73 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ LAI EA ++LF++D++AG+ P D AI LR + P +V+NK Sbjct: 74 -DGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANK 132 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGT-SELHSVIFKIFKQKYPNHPLEMIENNK 179 D + + YSL EI I+A H G S L V+ + P E+ E+ + Sbjct: 133 TDGLDPDQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHVLLPWMEDLAPQE--EVDEDAE 190 Query: 180 R-NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 + +EN E + S P+++A+VGRPNVGKSTL NR+LG R++ G T Sbjct: 191 YWAQFEAEENGEEEEEDDFDPQSLPIKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTT 250 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RDS+ I + DTAG+RK +IT+++E+ +V K++Q++ ++++DA Sbjct: 251 RDSIYIPMERDGREYVLIDTAGVRKRGKITDAVEKFSVIKTLQAIEDANVVMLVIDAREG 310 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLP-QIGDI---YIN 354 QDL ++ + N+G ++V+ +NKWD L Q+++ + + L ++G I ++ Sbjct: 311 ISDQDLSLLGFILNSGRSLVIVVNKWD------GLRQEVKEQVKETLDFRLGFIDFARVH 364 Query: 355 TISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYIT 414 IS G G+ +L SV E R+ TS L + + PP + R +LKY Sbjct: 365 FISALHGSGVGNLFESVREAYDSSTRRVGTSMLTRIMTMAVEDHQPPLVRGRRVKLKYAH 424 Query: 415 QIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I +P+SYKRYL+N R + + G PIR+ F+ +NPY K Sbjct: 425 AGGYNPPIVVIHGNQVKDLPDSYKRYLMNYFRKSLDVMGSPIRIQFKEGENPYANK 480 >gi|110642676|ref|YP_670406.1| GTP-binding protein EngA [Escherichia coli 536] gi|161486155|ref|NP_754915.2| GTP-binding protein EngA [Escherichia coli CFT073] gi|191172582|ref|ZP_03034121.1| ribosome-associated GTPase EngA [Escherichia coli F11] gi|218701021|ref|YP_002408650.1| GTP-binding protein EngA [Escherichia coli IAI39] gi|312965427|ref|ZP_07779659.1| small GTP-binding domain protein [Escherichia coli 2362-75] gi|31563151|sp|Q8FF59|DER_ECOL6 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|123147831|sp|Q0TEX4|DER_ECOL5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|226741137|sp|B7NQW0|DER_ECO7I RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|110344268|gb|ABG70505.1| probable GTP-binding protein EngA [Escherichia coli 536] gi|190907055|gb|EDV66655.1| ribosome-associated GTPase EngA [Escherichia coli F11] gi|218371007|emb|CAR18835.1| GTPase involved in ribosome synthesis and maintenance [Escherichia coli IAI39] gi|281179565|dbj|BAI55895.1| putative GTP-binding protein [Escherichia coli SE15] gi|307554534|gb|ADN47309.1| GTP-binding protein EngA [Escherichia coli ABU 83972] gi|312289847|gb|EFR17735.1| small GTP-binding domain protein [Escherichia coli 2362-75] gi|320196348|gb|EFW70972.1| GTP-binding protein EngA [Escherichia coli WV_060327] gi|323188371|gb|EFZ73663.1| small GTP-binding domain protein [Escherichia coli RN587/1] gi|330912286|gb|EGH40796.1| GTP-binding protein EngA [Escherichia coli AA86] Length = 490 Score = 279 bits (713), Expect = 8e-73, Method: Compositional matrix adjust. Identities = 167/472 (35%), Positives = 260/472 (55%), Gaps = 7/472 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A I G F +DT GI Sbjct: 1 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ LAI EA ++LF++D++AG+ P D AI LR + P +V+NK Sbjct: 61 -DGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGT-SELHSVIFKIFKQKYPNHPLEMIENNK 179 D + + Y+L EI I+A H G S L V+ + P E+ E+ + Sbjct: 120 TDGLDPDQAVVDFYALGLGEIYPIAASHGRGVLSLLEHVLLPWMEDLAPQE--EVDEDAE 177 Query: 180 R-NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 + +EN E + S P+++A+VGRPNVGKSTL NR+LG R++ G T Sbjct: 178 YWAQFEAEENGEEEEEDDFDPQSLPIKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTT 237 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RDS+ I + DTAG+RK +IT+++E+ +V K++Q++ ++++DA Sbjct: 238 RDSIYIPMERDGREYVLIDTAGVRKRGKITDAVEKFSVIKTLQAIEDANVVMLVIDAREG 297 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 QDL ++ + N+G ++V+ +NKWD +S ++ + ++ L I ++ IS Sbjct: 298 ISDQDLSLLGFILNSGRSLVIVVNKWDGLSQEVK--EQVKETLDFRLGFIDFARVHFISA 355 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 G G+ +L SV E R+ TS L + + PP + R +LKY Sbjct: 356 LHGSGVGNLFESVREAYDSSTRRVGTSMLTRIMTMAVEDHQPPLVRGRRVKLKYAHAGGY 415 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I +P+SYKRYL+N R + + G PIR+ F+ +NPY K Sbjct: 416 NPPIVVIHGNQVKDLPDSYKRYLMNYFRKSLDVMGSPIRIQFKEGENPYANK 467 >gi|329297578|ref|ZP_08254914.1| GTP-binding protein Der [Plautia stali symbiont] Length = 496 Score = 279 bits (713), Expect = 8e-73, Method: Compositional matrix adjust. Identities = 165/475 (34%), Positives = 258/475 (54%), Gaps = 8/475 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A + G F ++DT GI Sbjct: 1 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFIVIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ LAI EA ++LFL+D++AG+ P D I + LR ++ V+NK Sbjct: 61 -DGTEEGVENRMAEQSLLAIEEADVVLFLVDARAGVMPADQQIANHLRSRDKATFFVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLG-TSELHSVIFKIFKQKYPNHPLEMIENNK 179 D + Y+L EI I+A H G TS L + + P E EN Sbjct: 120 TDGLDPDAAVLDFYALGLGEIHPIAASHGRGVTSLLETALLPWMDDIAPREVSEEDENEA 179 Query: 180 R----NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQS 235 E E + E + + P+++A+VGRPNVGKSTL NR+LG +R++ Sbjct: 180 YWATLAAEENGEALEEEEEEAFDPTGLPIKLAIVGRPNVGKSTLTNRILGEDRVVVYDMP 239 Query: 236 GITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDA 295 G TRDS+ I + + DTAG+RK +IT+++E+ +V K++Q++ ++++DA Sbjct: 240 GTTRDSIYIPMERDDREYILIDTAGVRKRGKITDTVEKFSVIKTLQAIEDANVVMLVIDA 299 Query: 296 TIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINT 355 QDL ++ + N+G ++V+ +NKWD +S ++ +++ L I ++ Sbjct: 300 RAGISDQDLSLLGFILNSGRSLVIVVNKWDGLSQEIK--DEVKDTLDFRLGFIDFARVHF 357 Query: 356 ISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQ 415 IS G G+ +L SV E R+ TS L + + PP + R +LKY Sbjct: 358 ISALHGSGVGNLFESVTEAYDCSTKRVNTSMLTRIMNMAADDHQPPLVRGRRVKLKYAHA 417 Query: 416 IQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I +P+SYKRYL+N R + ++ G PIR+ F+ NPY K Sbjct: 418 GGYNPPIVVIHGNQVKDLPDSYKRYLMNYFRRSLNVMGTPIRIQFKEGDNPYAGK 472 >gi|311278558|ref|YP_003940789.1| ribosome-associated GTPase EngA [Enterobacter cloacae SCF1] gi|308747753|gb|ADO47505.1| ribosome-associated GTPase EngA [Enterobacter cloacae SCF1] Length = 492 Score = 279 bits (713), Expect = 9e-73, Method: Compositional matrix adjust. Identities = 163/472 (34%), Positives = 256/472 (54%), Gaps = 5/472 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A + G F +DT GI Sbjct: 1 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ LAI EA ++LF++D++AG+ P D AI LR + P +V+NK Sbjct: 61 -DGTEEGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRAREKPTFLVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLG-TSELHSVIFKIFKQKYPNHPL-EMIENN 178 D + + +SL EI I+A H G TS L V+ + P + E E Sbjct: 120 TDGIDPDQAVSDFWSLGLGEIYPIAASHGRGVTSLLEHVLLPWMEDVDPAEEVDEDAEYW 179 Query: 179 KRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 + E E + P+++A+VGRPNVGKSTL NR+LG +R++ G T Sbjct: 180 AQFEADENGEEAEEPEDDFNPQDLPIKLAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTT 239 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RDS+ I + DTAG+RK +IT+ +E+ +V K++Q++ ++++DA Sbjct: 240 RDSIYIPMERDEREYVLIDTAGVRKRGKITDVVEKFSVIKTLQAIEDANVVLLVIDAREG 299 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 QDL ++ + N+G ++V+ +NKWD +S ++ + ++ L I ++ IS Sbjct: 300 ISDQDLSLLGFILNSGRSLVIVVNKWDGLSQEVK--EQVKETLDYRLGFIDFARVHFISA 357 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 G G+ +L SV E R++T+ L + + PP + R +LKY Sbjct: 358 LHGSGVGNLFESVREAYDSSTRRVSTAMLTRIMNMAAEDHQPPLVRGRRVKLKYAHAGGY 417 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I +P+SYKRYL+N R + + G PIR+ F+ NP+ K Sbjct: 418 NPPIVVIHGNQVKDLPDSYKRYLMNYFRKSLDVMGTPIRIQFKEGDNPFANK 469 >gi|120598182|ref|YP_962756.1| GTP-binding protein EngA [Shewanella sp. W3-18-1] gi|166225859|sp|A1RHQ7|DER_SHESW RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|120558275|gb|ABM24202.1| small GTP-binding protein [Shewanella sp. W3-18-1] Length = 488 Score = 279 bits (713), Expect = 9e-73, Method: Compositional matrix adjust. Identities = 159/472 (33%), Positives = 261/472 (55%), Gaps = 11/472 (2%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A ++G F +VDT GI Sbjct: 1 MIPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAFLSGYEFIVVDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG I +M +Q+ AI EA ++LF+ D++AG+T D +I LR + +V+NK Sbjct: 61 -DGTEEGIETKMAEQSLAAIEEADVVLFMTDARAGLTAADLSIAQHLRSREKTTFVVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D A E +SL E+ +++A G + + + + IE Sbjct: 120 VDGIDADSACAEFWSLGLGEVYQMAASQGRGVTNMIEYALTPYAEAMG------IERQGE 173 Query: 181 NEESPKENITSE-GKSSVKNISK-PLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 E + T E ++ K + P+++A++G+PNVGKSTL NR+LG R++ + G T Sbjct: 174 EEVVDERQYTEEEAEAEQKRLQDLPIKLAIIGKPNVGKSTLTNRILGEERVVVYDEPGTT 233 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RDS+ I + I DTAG+R+ S++ + +E+ +V K++++V ++++DA Sbjct: 234 RDSIYIPMEREGREYVIIDTAGVRRRSKVHQVIEKFSVIKTLKAVEDANVVLLIIDAREG 293 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 +QDL ++ N G A+V+A+NKWD + + ++++ + L I I+ IS Sbjct: 294 VAEQDLGLLGFALNAGRALVIAVNKWDGIDQGIK--DRVKSELDRRLGFIDFARIHFISA 351 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 G G+ L S+ E R++TS L +Q +Q + PP + R +LKY Sbjct: 352 LHGTGVGHLFESIEEAYDSATRRVSTSMLTRIMQMSQDDHQPPLVNGRRVKLKYAHVGGY 411 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I +++P+SYKRY++N R + + G PI++ FQ NP+ K Sbjct: 412 NPPIVVIHGNQVSRLPDSYKRYMMNYFRRSLKVVGTPIQLRFQEGDNPFENK 463 >gi|148979611|ref|ZP_01815616.1| GTP-binding protein EngA [Vibrionales bacterium SWAT-3] gi|145961696|gb|EDK26993.1| GTP-binding protein EngA [Vibrionales bacterium SWAT-3] Length = 493 Score = 279 bits (713), Expect = 9e-73, Method: Compositional matrix adjust. Identities = 159/473 (33%), Positives = 267/473 (56%), Gaps = 6/473 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG A + F ++DT GI Sbjct: 1 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAQLGEHEFIVIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ AI+EA ++LF++D +AG+TP D AI LR+ P ++V NK Sbjct: 61 -DGTEEGVETKMAEQSLAAIDEADVVLFMVDGRAGLTPSDVAIAKHLRQLEKPSMLVVNK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNK- 179 +D + + L +++ +I+A H G + L + F + ++ + + Sbjct: 120 VDGIDPDAASADFWQLGVEDMYQIAAAHGRGVTALIDLALNPFAEALKAEQGKISDLTEF 179 Query: 180 RNEESPKENITSE-GKSSVKNI-SKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGI 237 +EE+ + + T E + K + +P+++A++GRPNVGKSTL NR+LG R++ G Sbjct: 180 EDEEAEQVDFTEEEAEQEFKRLQDQPIKLAIIGRPNVGKSTLTNRILGEERVVVYDMPGT 239 Query: 238 TRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATI 297 TRDS+ I + + DTAG+R+ I E++E+ +V K++++V ++++DA Sbjct: 240 TRDSIYIPMSRDEREYVLIDTAGVRRRKNINETVEKFSVVKTLKAVEDANVVLLVIDARE 299 Query: 298 PFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTIS 357 QDL ++ N G ++V+A+NKWD + + ++ + ++ + + L + I+ IS Sbjct: 300 NISDQDLSLLGFALNAGRSIVIAVNKWDGLDN--DVKERVKKELDRRLGFVDFARIHFIS 357 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 G G+ L SV E K TR+ TS L ++ + PP + R +LKY Sbjct: 358 ALHGTGVGHLFESVQEAYKSATTRVGTSVLTRIMKMATDDHQPPMVRGRRVKLKYAHAGG 417 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I +P+SYKR+L+N R + + G PIR+ FQ+S+NP+ K Sbjct: 418 YNPPIIVIHGNQVRDLPDSYKRFLMNYYRRSLEIMGTPIRIQFQNSENPFEAK 470 >gi|30063903|ref|NP_838074.1| GTP-binding protein EngA [Shigella flexneri 2a str. 2457T] gi|110806442|ref|YP_689962.1| GTP-binding protein EngA [Shigella flexneri 5 str. 8401] gi|123146827|sp|Q0T208|DER_SHIF8 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|30042158|gb|AAP17884.1| putative GTP-binding factor [Shigella flexneri 2a str. 2457T] gi|110615990|gb|ABF04657.1| putative GTP-binding factor [Shigella flexneri 5 str. 8401] gi|281601913|gb|ADA74897.1| GTP-binding protein engA [Shigella flexneri 2002017] gi|313650997|gb|EFS15397.1| small GTP-binding domain protein [Shigella flexneri 2a str. 2457T] gi|332754198|gb|EGJ84566.1| small GTP-binding domain protein [Shigella flexneri 4343-70] gi|332755561|gb|EGJ85925.1| small GTP-binding domain protein [Shigella flexneri K-671] gi|332756305|gb|EGJ86656.1| small GTP-binding domain protein [Shigella flexneri 2747-71] gi|332766344|gb|EGJ96554.1| small GTP-binding domain protein [Shigella flexneri 2930-71] gi|333001904|gb|EGK21470.1| small GTP-binding domain protein [Shigella flexneri K-218] gi|333016427|gb|EGK35758.1| small GTP-binding domain protein [Shigella flexneri K-304] Length = 490 Score = 279 bits (713), Expect = 9e-73, Method: Compositional matrix adjust. Identities = 168/472 (35%), Positives = 259/472 (54%), Gaps = 7/472 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A I G F +DT GI Sbjct: 1 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ LAI EA ++LF++D++AG+ P D AI LR + P +V NK Sbjct: 61 -DGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVVNK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGT-SELHSVIFKIFKQKYPNHPLEMIENNK 179 D + + YSL EI I+A H G S L V+ + P E+ E+ + Sbjct: 120 TDGLDPDQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHVLLPWMEDLAPQE--EVDEDAE 177 Query: 180 R-NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 + +EN E + S P+++A+VGRPNVGKSTL NR+LG R++ G T Sbjct: 178 YWAQFEAEENGEEEEEDDFDPQSLPIKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTT 237 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RDS+ I + DTAG+RK +IT+++E+ +V K++Q++ ++++DA Sbjct: 238 RDSIYIPMERDGREYVLIDTAGVRKRGKITDAVEKFSVIKTLQAIEDANVVMLVIDAREG 297 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 QDL ++ + N+G ++V+ +NKWD +S ++ + ++ L I ++ IS Sbjct: 298 ISDQDLSLLGFILNSGRSLVIVVNKWDGLSQEVK--EQVKETLDFRLGFIDFARVHFISA 355 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 G G+ +L SV E R+ TS L + + PP + R +LKY Sbjct: 356 LHGSGVGNLFESVREAYDSSTRRVGTSMLTRIMTMAVEDHQPPLVRGRRVKLKYAHAGGY 415 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I +P+SYKRYL+N R + + G PIR+ F+ +NPY K Sbjct: 416 NPPIVVIHGNQVKDLPDSYKRYLMNYFRKSLDVMGSPIRIQFKEGENPYANK 467 >gi|161950068|ref|YP_404245.2| GTP-binding protein EngA [Shigella dysenteriae Sd197] gi|309784738|ref|ZP_07679371.1| small GTP-binding domain protein [Shigella dysenteriae 1617] gi|308927108|gb|EFP72582.1| small GTP-binding domain protein [Shigella dysenteriae 1617] Length = 490 Score = 278 bits (712), Expect = 9e-73, Method: Compositional matrix adjust. Identities = 168/472 (35%), Positives = 259/472 (54%), Gaps = 7/472 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A I G F +DT GI Sbjct: 1 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ LAI EA ++LF++D++AG+ P D AI LR + P +V+NK Sbjct: 61 -DGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGT-SELHSVIFKIFKQKYPNHPLEMIENNK 179 D + + YSL EI I+A H G S L V+ + P E+ E+ + Sbjct: 120 TDGLDPDQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHVLLPWMEDLAPQE--EVDEDAE 177 Query: 180 R-NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 + +EN E + S P+++A+VGRPNVGKSTL NR+LG R++ G T Sbjct: 178 YWAQFEAEENGEEEEEDDFDPQSLPIKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTT 237 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RDS+ I + DTAG+RK +IT+++E+ +V K++Q++ ++++DA Sbjct: 238 RDSIYIPMERDGREYVLIDTAGVRKRGKITDAVEKFSVIKTLQAIEDANVVMLVIDAREG 297 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 QDL ++ + N+G ++V+ +NKWD +S ++ + ++ L I ++ IS Sbjct: 298 ISDQDLSLLGFILNSGRSLVIVVNKWDGLSQEVK--EQVKETLDFRLGFIDFARVHFISA 355 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 G G+ +L SV E R+ TS L + PP + R +LKY Sbjct: 356 LHGSGVGNLFESVREAYDSSTRRVGTSMLTRIMTMAVEDYQPPLVRGRRVKLKYAHAGGY 415 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I +P+SYKRYL+N R + + G PIR+ F+ +NPY K Sbjct: 416 NPPIVVIHGNQVKDLPDSYKRYLMNYFRKSLDVMGSPIRIQFKEGENPYANK 467 >gi|331648208|ref|ZP_08349298.1| ribosome-associated GTPase EngA [Escherichia coli M605] gi|26109281|gb|AAN81483.1|AE016764_165 Probable GTP-binding protein engA [Escherichia coli CFT073] gi|331043068|gb|EGI15208.1| ribosome-associated GTPase EngA [Escherichia coli M605] Length = 503 Score = 278 bits (712), Expect = 9e-73, Method: Compositional matrix adjust. Identities = 167/472 (35%), Positives = 260/472 (55%), Gaps = 7/472 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A I G F +DT GI Sbjct: 14 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGI 73 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ LAI EA ++LF++D++AG+ P D AI LR + P +V+NK Sbjct: 74 -DGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANK 132 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGT-SELHSVIFKIFKQKYPNHPLEMIENNK 179 D + + Y+L EI I+A H G S L V+ + P E+ E+ + Sbjct: 133 TDGLDPDQAVVDFYALGLGEIYPIAASHGRGVLSLLEHVLLPWMEDLAPQE--EVDEDAE 190 Query: 180 R-NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 + +EN E + S P+++A+VGRPNVGKSTL NR+LG R++ G T Sbjct: 191 YWAQFEAEENGEEEEEDDFDPQSLPIKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTT 250 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RDS+ I + DTAG+RK +IT+++E+ +V K++Q++ ++++DA Sbjct: 251 RDSIYIPMERDGREYVLIDTAGVRKRGKITDAVEKFSVIKTLQAIEDANVVMLVIDAREG 310 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 QDL ++ + N+G ++V+ +NKWD +S ++ + ++ L I ++ IS Sbjct: 311 ISDQDLSLLGFILNSGRSLVIVVNKWDGLSQEVK--EQVKETLDFRLGFIDFARVHFISA 368 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 G G+ +L SV E R+ TS L + + PP + R +LKY Sbjct: 369 LHGSGVGNLFESVREAYDSSTRRVGTSMLTRIMTMAVEDHQPPLVRGRRVKLKYAHAGGY 428 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I +P+SYKRYL+N R + + G PIR+ F+ +NPY K Sbjct: 429 NPPIVVIHGNQVKDLPDSYKRYLMNYFRKSLDVMGSPIRIQFKEGENPYANK 480 >gi|168186800|ref|ZP_02621435.1| GTP-binding protein EngA [Clostridium botulinum C str. Eklund] gi|169295122|gb|EDS77255.1| GTP-binding protein EngA [Clostridium botulinum C str. Eklund] Length = 438 Score = 278 bits (712), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 168/464 (36%), Positives = 249/464 (53%), Gaps = 36/464 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFN+L K++A+V + PG+TRDR+Y +A F I+DT GI Sbjct: 6 VAIVGRPNVGKSTLFNKLAGKRIAIVDDMPGVTRDRIYAEAEWLNNNFTIIDTGGIEPEN 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + I QM Q +LAI A ++LF++D K G+T D + LRK N I++ NK+D R Sbjct: 66 DDIIVAQMRRQAQLAIEMADVVLFIVDGKQGLTDADREVAHMLRKANKSIVLAVNKIDRR 125 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 N YE Y+L E + ISA LG +L + K+P+ EE Sbjct: 126 QLDDNIYEFYNLGLGEPMPISASQGLGLGDLLDEVV----GKFPDF---------NGEEE 172 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 E I RIA++GRPNVGKS+LINR+LG + + + G TRD+V Sbjct: 173 EDEYI---------------RIAMIGRPNVGKSSLINRILGEEKHIVSNIPGTTRDAVDS 217 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + DTAG+R+ S+I E +E+ + +++ S+ + I+++DAT +QD Sbjct: 218 YIETEEGKFVLIDTAGLRRKSKIKEQVERYSAVRTLASIENADVCILMIDATEDIAEQDE 277 Query: 305 RIVDSVFNTGHAVVLALNKWDMVS--DKL--NLLQDLRTKAIKNLPQIGDIYINTISGRT 360 RI+ A+V+ +NKWD++ DK N LRTK + LP ++ IS +T Sbjct: 278 RIIGYAHEINKAIVVIVNKWDLIEKDDKTMKNFKDKLRTK-LSFLPYASFLF---ISAKT 333 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G+ + ++ E + RI T LN + K L PP I R ++ Y+TQI + P Sbjct: 334 GQRVHKVLGMAKECYNNYCKRIKTGILNDVINKAVLMKEPPVIGTRRLKIYYVTQIGTKP 393 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 P+F+ F P + SY+RYL N+LR +F SG I++ F+ K Sbjct: 394 PTFVFFVNNPELLHFSYRRYLENKLRESFDFSGTGIKLEFRERK 437 >gi|193068430|ref|ZP_03049393.1| ribosome-associated GTPase EngA [Escherichia coli E110019] gi|192958382|gb|EDV88822.1| ribosome-associated GTPase EngA [Escherichia coli E110019] Length = 490 Score = 278 bits (712), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 168/472 (35%), Positives = 259/472 (54%), Gaps = 7/472 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A I G F +DT GI Sbjct: 1 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ LAI EA ++LF++D++AG+ P D AI LR + P +V+NK Sbjct: 61 -DGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGT-SELHSVIFKIFKQKYPNHPLEMIENNK 179 D + + YSL EI I+A H G S L V+ + P E+ E+ + Sbjct: 120 TDGLDPDQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHVLLPWMEDLAPQE--EVDEDAE 177 Query: 180 R-NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 + +EN E + S P+++A+VGRPNVGKSTL NR+LG R++ G T Sbjct: 178 YWAQFEAEENGEEEEEDDFDPQSLPIKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTT 237 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RDS+ I + DTAG+RK +IT+++E+ +V K++Q++ ++++DA Sbjct: 238 RDSIYIPMERDGREYVLIDTAGVRKRGKITDAVEKFSVIKTLQAIEDANVVMLVIDAREG 297 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 QDL ++ + N+G ++V+ +NKWD +S ++ + ++ L I ++ IS Sbjct: 298 ISDQDLSLLGFILNSGRSLVIVVNKWDGLSQEVK--EQVKETLDFRLGFIDFARVHFISA 355 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 G G+ +L SV E R+ TS L + + PP + R +LKY Sbjct: 356 LHGSGVGNLFESVREAYDSSTRRVGTSMLTRIMTMAVEDHQPPLVRGRRVKLKYAHAGGY 415 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I +P+SYKRYL+N R + + G PIR+ F+ NPY K Sbjct: 416 NPPIVVIHGNQVKDLPDSYKRYLMNYFRKSLDVMGSPIRIQFKEGVNPYANK 467 >gi|56480123|ref|NP_708350.2| GTP-binding protein EngA [Shigella flexneri 2a str. 301] gi|161984887|ref|YP_408907.2| GTP-binding protein EngA [Shigella boydii Sb227] gi|56383674|gb|AAN44057.2| putative GTP-binding factor [Shigella flexneri 2a str. 301] Length = 490 Score = 278 bits (712), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 168/472 (35%), Positives = 259/472 (54%), Gaps = 7/472 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A I G F +DT GI Sbjct: 1 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ LAI EA ++LF++D++AG+ P D AI LR + P +V NK Sbjct: 61 -DGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVVNK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGT-SELHSVIFKIFKQKYPNHPLEMIENNK 179 D + + YSL EI I+A H G S L V+ + P E+ E+ + Sbjct: 120 TDGLDPDQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHVLLPWMEDLAPQE--EVDEDAE 177 Query: 180 R-NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 + +EN E + S P+++A+VGRPNVGKSTL NR+LG R++ G T Sbjct: 178 YWAQFEAEENGEEEEEDDFDPQSLPIKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTT 237 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RDS+ I + DTAG+RK +IT+++E+ +V K++Q++ ++++DA Sbjct: 238 RDSIYIPMERDGREYVLIDTAGVRKRGKITDAVEKFSVIKTLQAIEDANVVMLVIDAREG 297 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 QDL ++ + N+G ++V+ +NKWD +S ++ + ++ L I ++ IS Sbjct: 298 ISDQDLSLLGFILNSGRSLVIVVNKWDGLSQEVK--EQVKETLDFRLGFIDFARVHFISA 355 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 G G+ +L SV E R+ TS L + + PP + R +LKY Sbjct: 356 LHGSGVGNLFESVREAYDSSTRRVGTSMLTRIMTMAVEDHQPPLVRGRRVKLKYAHAGGY 415 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I +P+SYKRYL+N R + + G PIR+ F+ +NPY K Sbjct: 416 NPPIVVIHGNQVKDLPDSYKRYLMNYFRKSLDVMGSPIRIQFKEGENPYANK 467 >gi|300920666|ref|ZP_07137077.1| ribosome-associated GTPase EngA [Escherichia coli MS 115-1] gi|300412347|gb|EFJ95657.1| ribosome-associated GTPase EngA [Escherichia coli MS 115-1] Length = 499 Score = 278 bits (712), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 168/472 (35%), Positives = 260/472 (55%), Gaps = 7/472 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A I G F +DT GI Sbjct: 10 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGI 69 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ LAI EA ++LF++D++AG+ P D AI LR + P +V+NK Sbjct: 70 -DGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANK 128 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGT-SELHSVIFKIFKQKYPNHPLEMIENNK 179 D + + YSL EI I+A H G S L V+ + P E+ E+ + Sbjct: 129 TDGLDPDQAVVDFYSLGLGEIYPIAACHGRGVLSLLEHVLLPWMEDLAPQE--EVDEDAE 186 Query: 180 R-NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 + +EN E + S P+++A+VGRPNVGKSTL NR+LG R++ G T Sbjct: 187 YWAQFEAEENGEEEEEDDFDPQSLPIKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTT 246 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RDS+ I + DTAG+RK +IT+++E+ +V K++Q++ ++++DA Sbjct: 247 RDSIYIPMERDGREYVLIDTAGVRKRGKITDAVEKFSVIKTLQAIEDANVVMLVIDAREG 306 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 QDL ++ + N+G ++V+ +NKWD +S ++ + ++ L I ++ IS Sbjct: 307 ISDQDLSLLGFILNSGRSLVIVVNKWDGLSQEVK--EQVKETLDFRLGFIDFARVHFISA 364 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 G G+ +L SV E R+ TS L + + PP + R +LKY Sbjct: 365 LHGSGVGNLFESVREAYDSSTRRVGTSMLTRIMTMAVEDHQPPLVRGRRVKLKYAHAGGY 424 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I +P+SYKRYL+N R + + G PIR+ F+ +NPY K Sbjct: 425 NPPIVVIHGNQVKDLPDSYKRYLMNYFRKSLDVMGSPIRIQFKEGENPYANK 476 >gi|291085040|ref|ZP_06570912.1| ribosome-associated GTPase EngA [Citrobacter youngae ATCC 29220] gi|291071734|gb|EFE09843.1| ribosome-associated GTPase EngA [Citrobacter youngae ATCC 29220] Length = 504 Score = 278 bits (712), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 165/490 (33%), Positives = 262/490 (53%), Gaps = 43/490 (8%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A I G F +DT GI Sbjct: 15 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGI 74 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ LAI EA ++LF++D++AG+ P D AI LR + P +V+NK Sbjct: 75 -DGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRARQKPTFLVANK 133 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 D + + YSL EI I+A H G L LE + Sbjct: 134 TDGLDPDQAVIDFYSLGLGEIHPIAASHGRGVLSL----------------LEHVLLPWM 177 Query: 181 NEESPKENITSEGKSSVKNISK----------------PLRIAVVGRPNVGKSTLINRLL 224 ++ +P+E + + + K ++ P+++A+VGRPNVGKSTL NR+L Sbjct: 178 DDVAPQEEVDEDAEYWAKLAAEENGEEEPEDDFNPQDLPIKLAIVGRPNVGKSTLTNRIL 237 Query: 225 GYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVR 284 G +R++ G TRDS+ I + DTAG+RK +ITE++E+ +V K++Q++ Sbjct: 238 GEDRVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKRGKITEAVEKFSVIKTLQAIE 297 Query: 285 TCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKN 344 ++++DA QDL ++ + N+G ++V+ +NKWD L Q+++ + + Sbjct: 298 DANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWD------GLTQEVKEQVKET 351 Query: 345 LP-QIGDI---YINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPP 400 L ++G I ++ IS G G+ +L SV E R++T+ L + + P Sbjct: 352 LDFRLGFIDFARVHFISALHGSGVGNLFESVREAYDSSTRRVSTAMLTRIMTMAVEDHQP 411 Query: 401 PTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCF 460 P + R +LKY +PP +I +P+SYKRYL+N R + G PIR+ F Sbjct: 412 PLVRGRRVKLKYAHAGGYNPPIVVIHGNQVKDLPDSYKRYLMNYFRKTLDVMGTPIRIQF 471 Query: 461 QSSKNPYIKK 470 + +NP+ K Sbjct: 472 KEGENPFANK 481 >gi|81242044|gb|ABB62754.1| putative GTP-binding factor [Shigella dysenteriae Sd197] Length = 503 Score = 278 bits (711), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 168/472 (35%), Positives = 259/472 (54%), Gaps = 7/472 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A I G F +DT GI Sbjct: 14 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGI 73 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ LAI EA ++LF++D++AG+ P D AI LR + P +V+NK Sbjct: 74 -DGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANK 132 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGT-SELHSVIFKIFKQKYPNHPLEMIENNK 179 D + + YSL EI I+A H G S L V+ + P E+ E+ + Sbjct: 133 TDGLDPDQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHVLLPWMEDLAPQE--EVDEDAE 190 Query: 180 R-NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 + +EN E + S P+++A+VGRPNVGKSTL NR+LG R++ G T Sbjct: 191 YWAQFEAEENGEEEEEDDFDPQSLPIKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTT 250 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RDS+ I + DTAG+RK +IT+++E+ +V K++Q++ ++++DA Sbjct: 251 RDSIYIPMERDGREYVLIDTAGVRKRGKITDAVEKFSVIKTLQAIEDANVVMLVIDAREG 310 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 QDL ++ + N+G ++V+ +NKWD +S ++ + ++ L I ++ IS Sbjct: 311 ISDQDLSLLGFILNSGRSLVIVVNKWDGLSQEVK--EQVKETLDFRLGFIDFARVHFISA 368 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 G G+ +L SV E R+ TS L + PP + R +LKY Sbjct: 369 LHGSGVGNLFESVREAYDSSTRRVGTSMLTRIMTMAVEDYQPPLVRGRRVKLKYAHAGGY 428 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I +P+SYKRYL+N R + + G PIR+ F+ +NPY K Sbjct: 429 NPPIVVIHGNQVKDLPDSYKRYLMNYFRKSLDVMGSPIRIQFKEGENPYANK 480 >gi|56416911|ref|YP_153985.1| GTP-binding protein EngA [Anaplasma marginale str. St. Maries] gi|222475278|ref|YP_002563694.1| GTP-binding protein (engA) [Anaplasma marginale str. Florida] gi|254995098|ref|ZP_05277288.1| GTP-binding protein EngA [Anaplasma marginale str. Mississippi] gi|255003264|ref|ZP_05278228.1| GTP-binding protein EngA [Anaplasma marginale str. Puerto Rico] gi|255004391|ref|ZP_05279192.1| GTP-binding protein EngA [Anaplasma marginale str. Virginia] gi|56388143|gb|AAV86730.1| GTP-binding protein [Anaplasma marginale str. St. Maries] gi|222419415|gb|ACM49438.1| GTP-binding protein (engA) [Anaplasma marginale str. Florida] Length = 438 Score = 278 bits (711), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 162/470 (34%), Positives = 259/470 (55%), Gaps = 39/470 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST+FNRLV+ K A+V N +TRDR G A G+ F +DT G+ G Sbjct: 4 VAIVGLPNVGKSTIFNRLVRSKSAIVSNVAHVTRDRKEGVANFCGLQFVAIDTGGV--GA 61 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKN-IPIIIVSNKMDT 123 + + +Q ELA+ ++LF++D+K G D +LRK+ P+I+V NK ++ Sbjct: 62 GTGMQALVTEQVELALECTDVVLFVVDAKKGTDAEDTDFAKWLRKRTPKPVILVVNKCES 121 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + ++ LDF V ISAEH+LG +L+ V+ +F+ ++ P E Sbjct: 122 NKSCALIDDMEYLDFLGPVYISAEHNLGMPDLYEVMSPLFEGEHRQKPRE---------- 171 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 K + I+++G+PNVGKST +N +LG R++T +G TRDS+S Sbjct: 172 ------------------KAITISIIGQPNVGKSTFMNSILGEKRVITDGTAGTTRDSIS 213 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + +K + + DTAG+RK +++TE++E+ ++K + ++ ++++D T+ +QD Sbjct: 214 AEYCYKGVRLLLTDTAGIRKRAKVTENMEKLSIKSATDAISRSSVVVLMVDFTLGINQQD 273 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKL---NLLQDLRTKAIKNLPQIGDIYINTISGRT 360 L I D+ G +V+ LNK D++ DK +LQ +R + + D+ I IS Sbjct: 274 LFIADTAIREGKGIVVVLNKSDLIDDKAVEEEILQAIRRHSRVDF----DVPIMKISALR 329 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G G ++ +E++K +RI+T+ LN WL + P NR RLKYITQ+ + P Sbjct: 330 GTGCSKVLDRAIELHKSASSRISTAQLNRWLNVALEHHAPHLQNNRKVRLKYITQVSALP 389 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 P+F++ I +SY +YL N NFS+ G+PIR+ + S NPY K Sbjct: 390 PTFVVSAN-TTHIEDSYLQYLKNSFIRNFSMQGVPIRLIIRKSHNPYSGK 438 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 60/123 (48%), Gaps = 6/123 (4%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TI+I+G PNVGKST N ++ +K + G TRD + + GV + DTAGI Sbjct: 175 TISIIGQPNVGKSTFMNSILGEKRVITDGTAGTTRDSISAEYCYKGVRLLLTDTAGIR-- 232 Query: 64 KNCSIAKQMN----DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 K + + M AI+ + +++ ++D GI D I ++ I++V N Sbjct: 233 KRAKVTENMEKLSIKSATDAISRSSVVVLMVDFTLGINQQDLFIADTAIREGKGIVVVLN 292 Query: 120 KMD 122 K D Sbjct: 293 KSD 295 Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 31/57 (54%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGM 261 ++A+VG PNVGKST+ NRL+ + + + +TRD N+ DT G+ Sbjct: 3 KVAIVGLPNVGKSTIFNRLVRSKSAIVSNVAHVTRDRKEGVANFCGLQFVAIDTGGV 59 >gi|81246371|gb|ABB67079.1| putative GTP-binding factor [Shigella boydii Sb227] Length = 503 Score = 278 bits (711), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 168/472 (35%), Positives = 259/472 (54%), Gaps = 7/472 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A I G F +DT GI Sbjct: 14 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGI 73 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ LAI EA ++LF++D++AG+ P D AI LR + P +V NK Sbjct: 74 -DGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVVNK 132 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGT-SELHSVIFKIFKQKYPNHPLEMIENNK 179 D + + YSL EI I+A H G S L V+ + P E+ E+ + Sbjct: 133 TDGLDPDQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHVLLPWMEDLAPQE--EVDEDAE 190 Query: 180 R-NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 + +EN E + S P+++A+VGRPNVGKSTL NR+LG R++ G T Sbjct: 191 YWAQFEAEENGEEEEEDDFDPQSLPIKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTT 250 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RDS+ I + DTAG+RK +IT+++E+ +V K++Q++ ++++DA Sbjct: 251 RDSIYIPMERDGREYVLIDTAGVRKRGKITDAVEKFSVIKTLQAIEDANVVMLVIDAREG 310 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 QDL ++ + N+G ++V+ +NKWD +S ++ + ++ L I ++ IS Sbjct: 311 ISDQDLSLLGFILNSGRSLVIVVNKWDGLSQEVK--EQVKETLDFRLGFIDFARVHFISA 368 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 G G+ +L SV E R+ TS L + + PP + R +LKY Sbjct: 369 LHGSGVGNLFESVREAYDSSTRRVGTSMLTRIMTMAVEDHQPPLVRGRRVKLKYAHAGGY 428 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I +P+SYKRYL+N R + + G PIR+ F+ +NPY K Sbjct: 429 NPPIVVIHGNQVKDLPDSYKRYLMNYFRKSLDVMGSPIRIQFKEGENPYANK 480 >gi|119944927|ref|YP_942607.1| GTP-binding protein EngA [Psychromonas ingrahamii 37] gi|166225845|sp|A1SU43|DER_PSYIN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|119863531|gb|ABM03008.1| small GTP-binding protein [Psychromonas ingrahamii 37] Length = 489 Score = 278 bits (711), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 164/473 (34%), Positives = 260/473 (54%), Gaps = 17/473 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YGQA I+ F ++DT GI Sbjct: 1 MLPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKIDEHEFIVIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 G I M Q+ LAI+EA +LFL+D++AG+T D AI LRK++ + +V+NK Sbjct: 61 T-GDEEGIDALMAGQSLLAIDEADAVLFLVDARAGMTIADEAIADHLRKQDKKVFVVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 D A E Y+L E+ I+A G ++ + F E++ Sbjct: 120 TDGVDADSVCAEFYALGLGEVYHIAAAQGKGVRQMIEIALDGFFDDVEQ------EDDFS 173 Query: 181 NEESPKENITSEGKSSVKNISK----PLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSG 236 + E+ E + + +K + P+++A++GRPNVGKSTL NR+LG R+L G Sbjct: 174 DLETGLEFVEEDEALLLKEQERLAALPIKLALIGRPNVGKSTLTNRILGEERVLVYDLPG 233 Query: 237 ITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDAT 296 TRDS+ I + + + DTAG+RK ++ E++E+ +V K++Q++ C ++++DA Sbjct: 234 TTRDSIYIPMSRDDREYILIDTAGVRKRKKVNETVEKFSVIKTLQAIEDCNVVLLIIDAR 293 Query: 297 IPFEKQDLRIVDSVFNTGHAVVLALNKWDMVS--DKLNLLQDLRTKAIKNLPQIGDIYIN 354 QDL ++ N G ++V+A+NKWD ++ DK + ++++ + L I I+ Sbjct: 294 DGISDQDLSLLGFTLNAGRSLVIAVNKWDGMTEYDK----ERVKSELDRRLGFIDFAKIH 349 Query: 355 TISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYIT 414 IS G G+ L SV E RI+TS L + + PP + +R +L+Y Sbjct: 350 FISALHGTGVGHLYESVEEAYDSSTKRISTSILTRIMTMAAADHEPPMVGSRRVKLRYAH 409 Query: 415 QIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 +PP +I K+ +SYKRYL+N R + + G PIR+ F+ NP+ Sbjct: 410 AGGYNPPLIVIHGNQVKKLADSYKRYLMNYFRRSLGIMGTPIRIEFREGTNPF 462 >gi|315634680|ref|ZP_07889964.1| ribosome-associated GTPase EngA [Aggregatibacter segnis ATCC 33393] gi|315476628|gb|EFU67376.1| ribosome-associated GTPase EngA [Aggregatibacter segnis ATCC 33393] Length = 512 Score = 278 bits (711), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 169/490 (34%), Positives = 271/490 (55%), Gaps = 31/490 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YGQA + G F ++DT GI DG Sbjct: 6 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAHLAGYDFIVIDTGGI-DGT 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKK-NIPIIIVSNKMDT 123 + ++M +Q+ LAI EA ++LFL+D++AG+T D I ++LR++ N ++V+NK+D Sbjct: 65 EEGVEEKMAEQSLLAIEEADIVLFLVDARAGLTSADIGIANYLRQRQNKTTVVVANKVDG 124 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL-HSVIFKIFKQ-----KYPNHPLEMIEN 177 A + E Y L EI +I+A G + L V+ + +Q K +E+ + Sbjct: 125 IDADSHCAEFYQLGLGEIAQIAASQGRGIASLMEQVLTPLAEQMAEAEKTEESAVEITDV 184 Query: 178 NKR--------------NEESP---KENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLI 220 + NEE E + E +NI +IA+VGRPNVGKSTL Sbjct: 185 SSEVAEFDEWDEDFDFSNEEDTALLDEELAQEQTPDNQNI----KIAIVGRPNVGKSTLT 240 Query: 221 NRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSM 280 NR+LG +R++ G TRDS+ I + DTAG+RK ++ ++E+ +V K++ Sbjct: 241 NRILGEDRVVVYDMPGTTRDSIYIPMERDGQNYTLIDTAGVRKRGKVHLAVEKFSVIKTL 300 Query: 281 QSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTK 340 Q+++ ++ +DA QDL ++ + N+G ++V+ +NKWD ++ ++ ++++ Sbjct: 301 QAIQDANVVLLTIDARENISDQDLSLLGFILNSGRSLVIVVNKWDGLNQEVK--DRVKSE 358 Query: 341 AIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPP 400 + L I ++ IS G G+ +L SV E + ++TTS L LQ ++ P Sbjct: 359 LDRRLDFIDFARVHFISALHGSGVGNLFESVKEAYECATQKMTTSMLTRILQIAVDEHQP 418 Query: 401 PTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCF 460 P + R +LKY +PP +I +K+P+SYKRYL N R + + G PIR+ F Sbjct: 419 PMVSGRRVKLKYAHPGGYNPPIIVIHGNQVDKLPDSYKRYLSNHFRRSLKIIGSPIRLQF 478 Query: 461 QSSKNPYIKK 470 Q NP+ K Sbjct: 479 QEGNNPFAGK 488 >gi|157144555|ref|YP_001451874.1| GTP-binding protein EngA [Citrobacter koseri ATCC BAA-895] gi|166224326|sp|A8AD75|DER_CITK8 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|157081760|gb|ABV11438.1| hypothetical protein CKO_00275 [Citrobacter koseri ATCC BAA-895] Length = 490 Score = 278 bits (711), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 163/490 (33%), Positives = 263/490 (53%), Gaps = 43/490 (8%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A I G F +DT GI Sbjct: 1 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ LAI EA ++LF++D++AG+ P D AI LR + P +V+NK Sbjct: 61 -DGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 D + + Y+L EI I+A H G L LE + Sbjct: 120 TDGLDPDQAVVDFYALGLGEIHPIAASHGRGVLSL----------------LEHVLLPWM 163 Query: 181 NEESPKENITSEGKSSVKNISK----------------PLRIAVVGRPNVGKSTLINRLL 224 ++ +P+E + + + K ++ P+++A+VGRPNVGKSTL NR+L Sbjct: 164 DDVAPQEEVDEDAEYWAKLAAEENGEEEPEDDFNPQDLPIKLAIVGRPNVGKSTLTNRIL 223 Query: 225 GYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVR 284 G +R++ G TRDS+ I + DTAG+RK ++T+++E+ +V K++Q++ Sbjct: 224 GEDRVVVYDMPGTTRDSIYIPMERDEREYVLIDTAGVRKRGKVTDAVEKFSVIKTLQAIE 283 Query: 285 TCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKN 344 ++++DA QDL ++ + N+G ++V+ +NKWD L Q+++ + + Sbjct: 284 DANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWD------GLTQEVKEQVKET 337 Query: 345 LP-QIGDI---YINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPP 400 L ++G I ++ IS G G+ +L SV E R++T+ L + + P Sbjct: 338 LDFRLGFIDFARVHFISALHGSGVGNLFESVREAYDSSTRRVSTAMLTRIMAMAVEDHQP 397 Query: 401 PTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCF 460 P + R +LKY +PP +I +P+SYKRYL+N R + + G PIR+ F Sbjct: 398 PLVRGRRVKLKYAHAGGYNPPIVVIHGNQVKDLPDSYKRYLMNYFRKSLDVMGTPIRIQF 457 Query: 461 QSSKNPYIKK 470 + +NPY K Sbjct: 458 KEGENPYANK 467 >gi|269958675|ref|YP_003328462.1| GTP-binding protein EngA [Anaplasma centrale str. Israel] gi|269848504|gb|ACZ49148.1| GTP-binding protein EngA [Anaplasma centrale str. Israel] Length = 438 Score = 278 bits (711), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 163/470 (34%), Positives = 259/470 (55%), Gaps = 39/470 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST+FNRLV+ K A+V N +TRDR G A G+ F +DT G+ G Sbjct: 4 VAIVGLPNVGKSTIFNRLVRSKSAIVSNVAHVTRDRKEGVANFCGLQFVAIDTGGV--GA 61 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKK-NIPIIIVSNKMDT 123 + + +Q ELA+ ++LF++D+K G D +LRK+ + P+I+V NK ++ Sbjct: 62 GTGMQALVTEQVELALECTDVVLFVVDAKKGTDAEDTDFAKWLRKRTSKPVILVVNKCES 121 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + ++ LDF V ISAEH+LG +L+ V+ +F Sbjct: 122 NKSCALIDDMEYLDFLGPVYISAEHNLGMPDLYEVMSPLF-------------------- 161 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 EG+ K K + I+++G+PNVGKST +N +LG R++T +G TRDS+S Sbjct: 162 --------EGEHRQKTREKAITISIIGQPNVGKSTFMNSILGEKRVITDGTAGTTRDSIS 213 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + +K + + DTAG+RK +++TE++E+ ++K + ++ ++++D T+ +QD Sbjct: 214 AEYCYKGVRLLLTDTAGIRKRAKVTENMEKLSIKSATDAISRSSVVVLMVDFTLGINQQD 273 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKL---NLLQDLRTKAIKNLPQIGDIYINTISGRT 360 L I D+ G +V+ LNK D++ DK +LQ +R + + D+ I IS Sbjct: 274 LFIADTAIREGKGIVVVLNKSDLIDDKAVEEEILQAIRRHSRVDF----DVPIMKISALR 329 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G G ++ +E++K +RI+T+ LN WL + P NR RLKYITQ+ + P Sbjct: 330 GTGCSKVLDRAIELHKSASSRISTAQLNRWLNVALEHHAPHLQNNRKVRLKYITQVSALP 389 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 P+F++ I +SY +YL N NFS+ G+PIR+ + S NPY K Sbjct: 390 PTFVVSAN-TTHIEDSYLQYLKNSFIRNFSMQGVPIRLIVRKSHNPYSGK 438 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 60/123 (48%), Gaps = 6/123 (4%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TI+I+G PNVGKST N ++ +K + G TRD + + GV + DTAGI Sbjct: 175 TISIIGQPNVGKSTFMNSILGEKRVITDGTAGTTRDSISAEYCYKGVRLLLTDTAGIR-- 232 Query: 64 KNCSIAKQMN----DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 K + + M AI+ + +++ ++D GI D I ++ I++V N Sbjct: 233 KRAKVTENMEKLSIKSATDAISRSSVVVLMVDFTLGINQQDLFIADTAIREGKGIVVVLN 292 Query: 120 KMD 122 K D Sbjct: 293 KSD 295 Score = 41.2 bits (95), Expect = 0.39, Method: Compositional matrix adjust. Identities = 45/179 (25%), Positives = 80/179 (44%), Gaps = 13/179 (7%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP 264 ++A+VG PNVGKST+ NRL+ + + + +TRD N+ DT G+ Sbjct: 3 KVAIVGLPNVGKSTIFNRLVRSKSAIVSNVAHVTRDRKEGVANFCGLQFVAIDTGGVGAG 62 Query: 265 SRITESLEQKTVKKSMQSVRTC-ETTIVLLDATIPFEKQDLRIVDSVFN-TGHAVVLALN 322 + + Q V + ++ C + + ++DA + +D + T V+L +N Sbjct: 63 TGM-----QALVTEQVELALECTDVVLFVVDAKKGTDAEDTDFAKWLRKRTSKPVILVVN 117 Query: 323 KWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTR 381 K + S+K L D ++ L +G +YI+ L ++M + E KTR Sbjct: 118 KCE--SNKSCALID----DMEYLDFLGPVYISAEHNLGMPDLYEVMSPLFEGEHRQKTR 170 >gi|251792908|ref|YP_003007634.1| GTP-binding protein EngA [Aggregatibacter aphrophilus NJ8700] gi|247534301|gb|ACS97547.1| GTP-binding protein EngA [Aggregatibacter aphrophilus NJ8700] Length = 509 Score = 278 bits (710), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 163/483 (33%), Positives = 273/483 (56%), Gaps = 20/483 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG A + G F ++DT GI DG Sbjct: 6 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHLAGYDFIVIDTGGI-DGT 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKK-NIPIIIVSNKMDT 123 + ++M +Q+ LAI EA ++LFL+D++AG+T D I ++LR++ N ++V+NK+D Sbjct: 65 EEGVEEKMAEQSLLAIEEADIVLFLVDARAGLTSADIGIANYLRQRQNKTTVVVANKVDG 124 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL-HSVIFKIFKQKYPNHPLEMIENNKRNE 182 A + E Y L EI +I+A G + L V+ + ++ +EN+ +E Sbjct: 125 IDADSHCAEFYQLGLGEIAQIAASQGRGIANLMEQVLSPLAEKMAEKEEESAVENDDVSE 184 Query: 183 ESPKE------NITSEGKSSVKN---------ISKPLRIAVVGRPNVGKSTLINRLLGYN 227 + + + ++E +++ + S+ ++IA+VGRPNVGKSTL NR+LG + Sbjct: 185 MAQHDEWDEDFDFSNEEDTALLDEELAQEQIPDSQNIKIAIVGRPNVGKSTLTNRILGED 244 Query: 228 RLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCE 287 R++ G TRDS+ I + DTAG+RK ++ ++E+ +V K++Q+++ Sbjct: 245 RVVVYDMPGTTRDSIYIPMERDGQQYTLIDTAGVRKRGKVHLAVEKFSVIKTLQAIQDAN 304 Query: 288 TTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQ 347 ++ +DA QDL ++ + N G ++V+ +NKWD ++ ++ ++++ + L Sbjct: 305 VVLLTIDARENISDQDLSLLGFILNAGRSLVIVVNKWDGLNQEVK--DRVKSELDRRLDF 362 Query: 348 IGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRY 407 I ++ IS G G+ +L SV E + ++TTS L LQ ++ PP I R Sbjct: 363 IDFARVHFISALHGSGVGNLFESVKEAYECATQKMTTSMLTRILQIAVDEHQPPMIGGRR 422 Query: 408 NRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 +LKY +PP +I +K+P+SYKRYL N R + + G PIR+ FQ NP+ Sbjct: 423 VKLKYAHPGGYNPPIIVIHGNQVDKLPDSYKRYLSNHFRRSLKIIGSPIRLQFQEGNNPF 482 Query: 468 IKK 470 + Sbjct: 483 AGR 485 >gi|328952198|ref|YP_004369532.1| GTP-binding protein engA [Desulfobacca acetoxidans DSM 11109] gi|328452522|gb|AEB08351.1| GTP-binding protein engA [Desulfobacca acetoxidans DSM 11109] Length = 449 Score = 278 bits (710), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 154/461 (33%), Positives = 241/461 (52%), Gaps = 29/461 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A++G NVGKSTLFNRL ++ A+V + PG+TRDRLYG F ++DT G D + Sbjct: 5 VALIGRTNVGKSTLFNRLTRQSRALVDDQPGVTRDRLYGDVTWEDHAFLLIDTGGFGDTE 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +++ ++ Q ELA EA L+LF++D + I P D + +LR+ P+++V NK+D Sbjct: 65 D-ALSSRVRQQAELAAGEADLVLFMVDGRQEIQPDDLEVAQYLRRSGKPVLLVINKIDGP 123 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + E Y + ISA+H LG L + + P P + Sbjct: 124 KQETRLPEFYRFGLTPLFPISAQHGLGVGSLLDAVVRYL----PAAP---------DAGE 170 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P E I R+AV+GRPNVGKS+ INR+LG RL+ G TRD++ Sbjct: 171 PPEGI---------------RVAVLGRPNVGKSSFINRVLGEERLIVSDTPGTTRDAIDA 215 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 W N P + DTAG+R+ SRI ++LE+ + +++++++ E ++LLDA +QDL Sbjct: 216 PLIWDNRPYVLIDTAGIRRRSRIHQNLERGMIWQALRALQRAEVVLLLLDAQEGLTEQDL 275 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 RI++ + G ++ +NKWD+V + + L I + +S TG + Sbjct: 276 RILNFIAVAGKGCLIGVNKWDVVGKDSQTQKAALDRLNMGLQLISYAPVLPLSVLTGYQV 335 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 + + EI + + R T LN + +PPP +R + Y+TQ S PP+F+ Sbjct: 336 SKVFPLLDEIYRQCQFRAATGELNRIFAQIVAAHPPPRYRHRSVKFYYLTQPDSRPPTFV 395 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 F P P+SY+RYLIN+LR L PIR+ F+ K+ Sbjct: 396 AFTNIPGATPDSYRRYLINQLRERLGLPYAPIRLHFKGKKH 436 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 47/171 (27%), Positives = 80/171 (46%), Gaps = 13/171 (7%) Query: 202 KPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGM 261 KPL +A++GR NVGKSTL NRL +R L Q G+TRD + W++H + DT G Sbjct: 2 KPL-VALIGRTNVGKSTLFNRLTRQSRALVDDQPGVTRDRLYGDVTWEDHAFLLIDTGGF 60 Query: 262 RKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLAL 321 ++L + +++ + + + ++D + DL + + +G V+L + Sbjct: 61 ---GDTEDALSSRVRQQAELAAGEADLVLFMVDGRQEIQPDDLEVAQYLRRSGKPVLLVI 117 Query: 322 NKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVL 372 NK D + L + R P IS + G G+ L+ +V+ Sbjct: 118 NKIDGPKQETRLPEFYRFGLTPLFP---------ISAQHGLGVGSLLDAVV 159 >gi|331673966|ref|ZP_08374729.1| ribosome-associated GTPase EngA [Escherichia coli TA280] gi|331069239|gb|EGI40631.1| ribosome-associated GTPase EngA [Escherichia coli TA280] Length = 503 Score = 278 bits (710), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 168/472 (35%), Positives = 259/472 (54%), Gaps = 7/472 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A I G F +DT GI Sbjct: 14 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGI 73 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ LAI EA ++LF++D++AG+ P D AI LR + P +V+NK Sbjct: 74 -DGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANK 132 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGT-SELHSVIFKIFKQKYPNHPLEMIENNK 179 D + + YSL EI I+A H G S L V+ + P E+ E+ + Sbjct: 133 TDGLDPDQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHVLLPWMEDLAPQE--EVDEDAE 190 Query: 180 R-NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 + +EN E + S P+++A+VGRPNVGKSTL NR+LG R++ G T Sbjct: 191 YWAQFEAEENGEEEEEDDFDPQSLPIKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTT 250 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RDS+ I + DTAG+RK +IT+++E+ +V K++Q++ ++++DA Sbjct: 251 RDSIYIPMERDGREYVLIDTAGVRKRGKITDAVEKFSVIKTLQAIEDANVVMLVIDAREG 310 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 QDL + + N+G ++V+ +NKWD +S ++ + ++ L I ++ IS Sbjct: 311 ISDQDLSQLGFILNSGRSLVIVVNKWDGLSQEVK--EQVKETLDFRLGFIDFARVHFISA 368 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 G G+ +L SV E R+ TS L + + PP + R +LKY Sbjct: 369 LHGSGVGNLFESVREAYDSSTRRVGTSMLTRIMTMAVEDHQPPLVRGRRVKLKYAHAGGY 428 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I +P+SYKRYL+N R + + G PIR+ F+ +NPY K Sbjct: 429 NPPIVVIHGNQVKDLPDSYKRYLMNYFRKSLDVMGSPIRIQFKEGENPYANK 480 >gi|260771392|ref|ZP_05880317.1| GTP-binding protein EngA [Vibrio furnissii CIP 102972] gi|260613518|gb|EEX38712.1| GTP-binding protein EngA [Vibrio furnissii CIP 102972] gi|315180972|gb|ADT87886.1| GTP-binding protein [Vibrio furnissii NCTC 11218] Length = 495 Score = 278 bits (710), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 166/478 (34%), Positives = 260/478 (54%), Gaps = 15/478 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YGQA + F ++DT GI Sbjct: 1 MIPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGEHEFIVIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M Q+ AI+EA ++LF++D +AG+T D AI + LR+ I+V NK Sbjct: 61 -DGSEEGVETKMAAQSLAAIDEADVVLFMVDGRAGLTVADEAIANHLRRVEKNAILVVNK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNH--PLEMIENN 178 +D A+ E + L ++ +I+A H G L ++ LE + Sbjct: 120 VDGIDAETASAEFWQLGVDQMFQIAAAHGRGVGALIDRALNPLAEQMQQEEAALEDLTGF 179 Query: 179 KRNEESPKENITSEGKSSV--KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSG 236 E+ K + T E + +P+++A++GRPNVGKSTL NR+LG R++ G Sbjct: 180 VDAEQEEKLDYTEEEAEEAYKRLQDQPIKLAIIGRPNVGKSTLTNRILGEERVVVYDMPG 239 Query: 237 ITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDAT 296 TRDS+ I + DTAG+R+ RI E++E+ +V K+++++ ++++DA Sbjct: 240 TTRDSIYIPMQRDEREYVLIDTAGVRRRKRINETVEKFSVVKTLKAIEDANVVLLVVDAR 299 Query: 297 IPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQ----IGDIY 352 QDL ++ N G ++V+A+NKWD L D++ + K L + + Sbjct: 300 ENISDQDLSLLGFALNAGRSIVIAVNKWD------GLDTDVKERVKKELDRRLGFVDFAR 353 Query: 353 INTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKY 412 I+ IS G G+ L SV E + TR+ TS L ++ + PP + R +LKY Sbjct: 354 IHFISALHGTGVGHLFESVQEAYRSATTRVGTSVLTRIMKMATEDHQPPLVRGRRVKLKY 413 Query: 413 ITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I N++P+SYKRYL+N R + + G PIR+ FQ+S+NP+ K Sbjct: 414 AHAGGYNPPIIVIHGNQVNELPDSYKRYLMNYYRKSLDIMGTPIRIQFQNSENPFEGK 471 >gi|315288063|gb|EFU47463.1| ribosome-associated GTPase EngA [Escherichia coli MS 110-3] gi|324008519|gb|EGB77738.1| ribosome-associated GTPase EngA [Escherichia coli MS 57-2] Length = 499 Score = 278 bits (710), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 166/472 (35%), Positives = 260/472 (55%), Gaps = 7/472 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A I G F +DT GI Sbjct: 10 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGI 69 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ LAI EA ++LF++D+++G+ P D AI LR + P +V+NK Sbjct: 70 -DGTEDGVETRMAEQSLLAIEEADVVLFMVDARSGLMPADEAIAKHLRSREKPTFLVANK 128 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGT-SELHSVIFKIFKQKYPNHPLEMIENNK 179 D + + Y+L EI I+A H G S L V+ + P E+ E+ + Sbjct: 129 TDGLDPDQAVVDFYALGLGEIYPIAASHGRGVLSLLEHVLLPWMEDLAPQE--EVDEDAE 186 Query: 180 R-NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 + +EN E + S P+++A+VGRPNVGKSTL NR+LG R++ G T Sbjct: 187 YWAQFEAEENGEEEEEDDFDPQSLPIKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTT 246 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RDS+ I + DTAG+RK +IT+++E+ +V K++Q++ ++++DA Sbjct: 247 RDSIYIPMERDGREYVLIDTAGVRKRGKITDAVEKFSVIKTLQAIEDANVVMLVIDAREG 306 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 QDL ++ + N+G ++V+ +NKWD +S ++ + ++ L I ++ IS Sbjct: 307 ISDQDLSLLGFILNSGRSLVIVVNKWDGLSQEVK--EQVKETLDFRLGFIDFARVHFISA 364 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 G G+ +L SV E R+ TS L + + PP + R +LKY Sbjct: 365 LHGSGVGNLFESVREAYDSSTRRVGTSMLTRIMTMAVEDHQPPLVRGRRVKLKYAHAGGY 424 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I +P+SYKRYL+N R + + G PIR+ F+ +NPY K Sbjct: 425 NPPIVVIHGNQVKDLPDSYKRYLMNYFRKSLDVMGSPIRIQFKEGENPYANK 476 >gi|162138394|ref|YP_541823.2| GTP-binding protein EngA [Escherichia coli UTI89] gi|218559437|ref|YP_002392350.1| GTP-binding protein EngA [Escherichia coli S88] gi|218690631|ref|YP_002398843.1| GTP-binding protein EngA [Escherichia coli ED1a] gi|306814419|ref|ZP_07448581.1| GTP-binding protein EngA [Escherichia coli NC101] gi|226741136|sp|B7MHZ6|DER_ECO45 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|254783154|sp|B7MYE6|DER_ECO81 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|218366206|emb|CAR03954.1| GTPase involved in ribosome synthesis and maintenance [Escherichia coli S88] gi|218428195|emb|CAR09112.2| GTPase involved in ribosome synthesis and maintenance [Escherichia coli ED1a] gi|222034222|emb|CAP76963.1| GTP-binding protein engA [Escherichia coli LF82] gi|294491525|gb|ADE90281.1| ribosome-associated GTPase EngA [Escherichia coli IHE3034] gi|305851813|gb|EFM52265.1| GTP-binding protein EngA [Escherichia coli NC101] gi|307625933|gb|ADN70237.1| GTP-binding protein EngA [Escherichia coli UM146] gi|312947088|gb|ADR27915.1| GTP-binding protein EngA [Escherichia coli O83:H1 str. NRG 857C] gi|323949171|gb|EGB45062.1| ribosome GTPase EngA [Escherichia coli H252] gi|323955752|gb|EGB51510.1| ribosome GTPase EngA [Escherichia coli H263] Length = 490 Score = 277 bits (709), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 166/472 (35%), Positives = 260/472 (55%), Gaps = 7/472 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A I G F +DT GI Sbjct: 1 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ LAI EA ++LF++D+++G+ P D AI LR + P +V+NK Sbjct: 61 -DGTEDGVETRMAEQSLLAIEEADVVLFMVDARSGLMPADEAIAKHLRSREKPTFLVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGT-SELHSVIFKIFKQKYPNHPLEMIENNK 179 D + + Y+L EI I+A H G S L V+ + P E+ E+ + Sbjct: 120 TDGLDPDQAVVDFYALGLGEIYPIAASHGRGVLSLLEHVLLPWMEDLAPQE--EVDEDAE 177 Query: 180 R-NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 + +EN E + S P+++A+VGRPNVGKSTL NR+LG R++ G T Sbjct: 178 YWAQFEAEENGEEEEEDDFDPQSLPIKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTT 237 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RDS+ I + DTAG+RK +IT+++E+ +V K++Q++ ++++DA Sbjct: 238 RDSIYIPMERDGREYVLIDTAGVRKRGKITDAVEKFSVIKTLQAIEDANVVMLVIDAREG 297 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 QDL ++ + N+G ++V+ +NKWD +S ++ + ++ L I ++ IS Sbjct: 298 ISDQDLSLLGFILNSGRSLVIVVNKWDGLSQEVK--EQVKETLDFRLGFIDFARVHFISA 355 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 G G+ +L SV E R+ TS L + + PP + R +LKY Sbjct: 356 LHGSGVGNLFESVREAYDSSTRRVGTSMLTRIMTMAVEDHQPPLVRGRRVKLKYAHAGGY 415 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I +P+SYKRYL+N R + + G PIR+ F+ +NPY K Sbjct: 416 NPPIVVIHGNQVKDLPDSYKRYLMNYFRKSLDVMGSPIRIQFKEGENPYANK 467 >gi|258591964|emb|CBE68269.1| GTP-binding protein engA [NC10 bacterium 'Dutch sediment'] Length = 439 Score = 277 bits (709), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 151/462 (32%), Positives = 237/462 (51%), Gaps = 30/462 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + IVG PNVGKSTLFNRLV + A+V + PG+TRDRLY G F + DT G+ G Sbjct: 6 VTIVGRPNVGKSTLFNRLVGGRRAIVHDQPGVTRDRLYATVEWKGRAFTLGDTGGLEPGV 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKK-NIPIIIVSNKMDT 123 +A Q+ Q A+ E+ L++F++D++ G+TP D I LR I++ NK+D Sbjct: 66 GTGLAAQVLAQVRQAVQESVLVIFVVDAREGLTPLDEEIARLLRHDVQTRIVVAPNKVDR 125 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + E + + F E+ +SAEH LG +EL VI E Sbjct: 126 PTHEVLASEFFRIGFAEVCPVSAEHGLGVAELCDVI---------------------AEA 164 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 P SE SK +R+ VVGRPNVGKS+L+N LLG R++ Q+G TRD++ Sbjct: 165 LPVTESASE--------SKAIRVTVVGRPNVGKSSLVNALLGQERVIVSEQAGTTRDAID 216 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + + + + DTAG+R S++ + LE+ +V ++++++ + ++L+DA QD Sbjct: 217 TPFTYNDTAYILIDTAGLRSRSKVQQPLERFSVVRALKAIERSDVALILVDAKDGITDQD 276 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 +I V + G ++ NKWD++ + Q + L + I +S TG Sbjct: 277 AKIAAYVQDVGSGAIVVANKWDLMPSGADARQQFTLEIRDRLRHVDYAPIAFVSALTGSD 336 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 + L V + + R++T +LN + + + PPP R R Y TQ S PP+F Sbjct: 337 VPTLFPLVQSVAQARAHRVSTPHLNELIGEAVQKYPPPAHGKRPVRFHYATQAASLPPTF 396 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 L+F + P + Y+RYL+N+LR + G PIR+ + + Sbjct: 397 LLFVSDPRAVRVPYRRYLVNQLRAAYGFVGTPIRLVLKGKRG 438 >gi|221632763|ref|YP_002521985.1| GTP-binding protein EngA [Thermomicrobium roseum DSM 5159] gi|254783175|sp|B9KZ43|DER_THERP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|221155859|gb|ACM04986.1| ribosome-associated GTPase EngA [Thermomicrobium roseum DSM 5159] Length = 460 Score = 277 bits (709), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 155/472 (32%), Positives = 252/472 (53%), Gaps = 43/472 (9%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI---- 60 +AIVG PNVGKSTLFNRL++++ A+V PG TRDR+YG N + F + DT G+ Sbjct: 6 VAIVGRPNVGKSTLFNRLLRQRRAIVEEVPGTTRDRIYGIVEWNDLRFGLFDTGGLLTEE 65 Query: 61 --ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVS 118 + + Q ELAI EA L++F++D+ AG T D + FLR+ + PI++V+ Sbjct: 66 EIERSSERELVEATKAQAELAIAEADLVIFVVDASAGPTAGDWEVADFLRRTDKPILLVA 125 Query: 119 NKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 NK ++R + N + Y L + + +SA H G ++L I + ++ E+ Sbjct: 126 NKAESREREFNALQFYELGLGDPIPVSALHGRGIADLLDAIAERLPRRE--------EDG 177 Query: 179 KRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 E+PK IA+VGRPNVGKS L+N +LG R + G T Sbjct: 178 TAEAEAPK-------------------IAIVGRPNVGKSALLNAILGQPRQIVSPIPGTT 218 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RD+V WK PI + DTAG+R+P RI +E+ ++ ++ +++ + I+++DAT P Sbjct: 219 RDAVDTELVWKGQPIVLIDTAGIRRPGRIERGIERYSILRAERAIERSDVAILVVDATEP 278 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSD------KLNLLQDLRTKAIKNLPQIGDIY 352 F QD + V + +V+A+NKWD+ + +D R +A +P ++ Sbjct: 279 FTHQDQAVAGKVLDAKKGIVVAINKWDLFEHMEGEGAREAFEEDAR-EAFHFMPWAPLVF 337 Query: 353 INTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKY 412 ++ + TG+ ++ ++ L + RI T+ LN L++ +PPPT ++ + Y Sbjct: 338 VSAL---TGKNVEHVVDLALVVVAERSRRIPTAELNQLLREAIAHHPPPTRPGKWVKFYY 394 Query: 413 ITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 +TQ + +PP+F+ FC P + SYKRYL NR+R + G PI + F+ + Sbjct: 395 VTQPEVNPPTFVFFCNRPQLVHFSYKRYLENRIRERYGFLGTPIELVFRERE 446 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 47/173 (27%), Positives = 76/173 (43%), Gaps = 13/173 (7%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGM--- 261 ++A+VGRPNVGKSTL NRLL R + G TRD + W + +FDT G+ Sbjct: 5 QVAIVGRPNVGKSTLFNRLLRQRRAIVEEVPGTTRDRIYGIVEWNDLRFGLFDTGGLLTE 64 Query: 262 -RKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLA 320 L + T ++ ++ + I ++DA+ D + D + T ++L Sbjct: 65 EEIERSSERELVEATKAQAELAIAEADLVIFVVDASAGPTAGDWEVADFLRRTDKPILLV 124 Query: 321 LNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 NK + + N LQ +P +S G G+ DL+ ++ E Sbjct: 125 ANKAESREREFNALQFYELGLGDPIP---------VSALHGRGIADLLDAIAE 168 >gi|157374575|ref|YP_001473175.1| GTP-binding protein EngA [Shewanella sediminis HAW-EB3] gi|189037163|sp|A8FT74|DER_SHESH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|157316949|gb|ABV36047.1| small GTP-binding protein [Shewanella sediminis HAW-EB3] Length = 488 Score = 277 bits (709), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 162/473 (34%), Positives = 261/473 (55%), Gaps = 18/473 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A ++G F +VDT GI Sbjct: 1 MIPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAFLSGYEFIVVDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG I M +Q+ AI EA ++LFL D++AG+T D AI LR++ +V+NK Sbjct: 61 -DGTEEGIETHMAEQSLAAIEEADVVLFLTDARAGLTAADQAICEHLRRREKTTFVVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPL-EMIENNK 179 +D A E ++L E+ +++A G + + +Y P E + N+ Sbjct: 120 VDGIDADSACAEFWALGLGEVYQMAAAQGRGVTNM---------IEYALAPYAEALGLNR 170 Query: 180 RNEESPKENITSEGKSSVKNISK-----PLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQ 234 +E E + + K P+++A++G+PNVGKSTL NR+LG R++ Sbjct: 171 DGDEDEDEEEREYSEEEAEAEQKRLQDLPIKMAIIGKPNVGKSTLTNRILGEERVVVYDS 230 Query: 235 SGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLD 294 G TRDS+ I + DTAG+R+ S++ E++E+ +V K++++V C ++++D Sbjct: 231 PGTTRDSIYIPMERDGREYVMIDTAGVRRRSKVHETVEKFSVIKTLKAVEDCNVVLLIID 290 Query: 295 ATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYIN 354 A +QDL ++ N G A+V+A+NKWD + ++ ++++ + L I I+ Sbjct: 291 AREGIAEQDLGLLGFALNAGRALVIAVNKWDGIDQ--DIKDRVKSELDRRLGFIDFARIH 348 Query: 355 TISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYIT 414 IS G G+ L SV E R++TS L +Q Q + PP + R +LKY Sbjct: 349 FISALHGTGVGHLFESVQEAYDSATRRVSTSMLTRIMQMAQDDHQPPLVNGRRVKLKYAH 408 Query: 415 QIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 +PP ++ K+P+SYKR+++N R + + G PI++ FQ S NP+ Sbjct: 409 AGGYNPPIVVVHGNQVKKLPDSYKRFMMNYYRRSLKVMGTPIQIRFQDSANPF 461 >gi|89072706|ref|ZP_01159271.1| GTP-binding protein EngA [Photobacterium sp. SKA34] gi|89051526|gb|EAR56980.1| GTP-binding protein EngA [Photobacterium sp. SKA34] Length = 500 Score = 277 bits (709), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 163/479 (34%), Positives = 266/479 (55%), Gaps = 12/479 (2%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A + F ++DT GI Sbjct: 1 MIPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAELEEHEFIVIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ AI EA ++LFL+D +AG+T D AI LR + P +V NK Sbjct: 61 -DGTEEGVETKMAEQSLAAIEEADVVLFLVDGRAGLTAADEAIAKHLRSREKPTFLVVNK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D A E + L + +I+A + G + L F K E E + Sbjct: 120 VDGIDADSACAEFWRLGVDAMYQIAATQNRGVTALMERALAPFSDKLNAELAEEGEEQEL 179 Query: 181 N-------EESPKENIT-SEGKSSVKNI-SKPLRIAVVGRPNVGKSTLINRLLGYNRLLT 231 E+ K N++ ++ +++ K + +P+++A++GRPNVGKSTL NR+LG R++ Sbjct: 180 QLEDLTSVEDIEKANLSEADAEAAYKRLQEQPIKLAIIGRPNVGKSTLTNRILGEERVVV 239 Query: 232 GSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIV 291 G TRDS+ I + DTAG+R+ + +++E+ +V +++++V ++ Sbjct: 240 YDMPGTTRDSIYIPMERDGQEYVLIDTAGIRRRKNMHQAVEKFSVIQTLKAVEDANVVLL 299 Query: 292 LLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDI 351 ++DA QDL ++ N G ++V+A+NKWD + +++ + ++++ + L + Sbjct: 300 IIDARENISDQDLSLLGFALNAGRSLVIAVNKWDGLDNEVK--ERVKSELDRRLGFVDFA 357 Query: 352 YINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLK 411 I+ IS G G+ L SV+E + RI+TS L +Q Q + PP I R +LK Sbjct: 358 RIHFISALHGTGVGHLYESVIEAYQSATKRISTSLLTRIMQMAQDDHQPPMIRGRRVKLK 417 Query: 412 YITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 Y +PP ++ N +P SYKRYL+N R + + G PIR+ FQ+S+NP+ K Sbjct: 418 YAHAGGYNPPIIVVHGNQVNDLPGSYKRYLMNYYRKSLEMMGTPIRIQFQNSENPFETK 476 >gi|320175074|gb|EFW50187.1| GTP-binding protein EngA [Shigella dysenteriae CDC 74-1112] Length = 490 Score = 277 bits (709), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 167/472 (35%), Positives = 259/472 (54%), Gaps = 7/472 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A I G F +DT GI Sbjct: 1 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ LAI EA ++LF++D++AG+ P D AI LR + P +V+NK Sbjct: 61 -DGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGT-SELHSVIFKIFKQKYPNHPLEMIENNK 179 D + + YSL EI I+A H G S L V+ + P E+ E + Sbjct: 120 TDGLDPDQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHVLLPWMEDLAPQE--EVDEGAE 177 Query: 180 R-NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 + +EN E + S P+++A+VGRPNVGKSTL NR+LG R++ G T Sbjct: 178 YWAQFEAEENGEEEEEDDFDPQSLPIKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTT 237 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RDS+ I + DTAG+RK +IT+++E+ +V K++Q++ ++++DA Sbjct: 238 RDSIYIPMERDGREYVLIDTAGVRKRGKITDAVEKFSVIKTLQAIEDANVVMLVIDAREG 297 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 Q+L ++ + N+G ++V+ +NKWD +S ++ + ++ L I ++ IS Sbjct: 298 ISDQELSLLGFILNSGRSLVIVVNKWDGLSQEVK--EQVKETLDFRLGFIDFARVHFISA 355 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 G G+ +L SV E R+ TS L + + PP + R +LKY Sbjct: 356 LHGSGVGNLFESVREAYDSSTRRVGTSMLTRIMTMAVEDHQPPLVRGRRVKLKYAHAGGY 415 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I +P+SYKRYL+N R + + G PIR+ F+ +NPY K Sbjct: 416 NPPIVVIHGNQVKDLPDSYKRYLMNYFRKSLDVMGSPIRIQFKEGENPYANK 467 >gi|270264725|ref|ZP_06192990.1| GTP-binding protein EngA [Serratia odorifera 4Rx13] gi|270041408|gb|EFA14507.1| GTP-binding protein EngA [Serratia odorifera 4Rx13] Length = 493 Score = 277 bits (709), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 166/477 (34%), Positives = 259/477 (54%), Gaps = 14/477 (2%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI +A+VG PNVGKSTLFNRL + A+V + PG+TRDR YG+A + G F IVDT GI Sbjct: 1 MIPVVALVGRPNVGKSTLFNRLTHTRDALVADFPGLTRDRKYGRAEVEGNEFIIVDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M Q+ LAI EA ++LF++D++AG+ P D I LR + +V+NK Sbjct: 61 -DGTEDGVETRMAGQSLLAIEEADIVLFMVDARAGLMPADQGIAQHLRNRQKATFLVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 D + YSL ++ I+A H G ++L + F + P E Sbjct: 120 TDGMDPDMATADFYSLGLGDVHAIAASHGRGVAQLIEHVLVPFVGEKPEEVELTEEEANA 179 Query: 181 NEESPKENITSEGKSSVKNISK---PLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGI 237 + +E+ E + + + P+++A+VGRPNVGKSTL NR+LG R++ G Sbjct: 180 AYWAEQEDEIPEDEEPEDDFNPQDLPIKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGT 239 Query: 238 TRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATI 297 TRDS+ I + DTAG+RK ++TE++E+ +V K++Q++ ++++DA Sbjct: 240 TRDSIYIPMVRDEREYVLIDTAGVRKRGKVTETVEKFSVIKTLQAIEDANVVLLVVDARE 299 Query: 298 PFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDK----LNLLQDLRTKAIKNLPQIGDIYI 353 QDL ++ + N+G ++V+ +NKWD +S++ + + DLR L + I Sbjct: 300 GISDQDLSLLGFILNSGRSLVIVVNKWDGMSEEDREHVKEMLDLR------LGFVDFARI 353 Query: 354 NTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYI 413 + IS G G+ +L VSVLE + R+ TS L +Q + PP + R +LKY Sbjct: 354 HFISALHGSGVGNLFVSVLEAYECATRRVNTSMLTKIMQMAAEDHQPPLVRGRRVKLKYA 413 Query: 414 TQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I + + +SYKRYL+N R + + G PIR+ F+ NP+ K Sbjct: 414 HAGGYNPPIVVIHGNQVSDLADSYKRYLMNYFRRSLKVMGTPIRIQFKEGDNPFAGK 470 >gi|117624740|ref|YP_853653.1| GTP-binding protein EngA [Escherichia coli APEC O1] gi|237705021|ref|ZP_04535502.1| GTP-binding protein EngA [Escherichia sp. 3_2_53FAA] gi|91073411|gb|ABE08292.1| probable GTP-binding protein EngA [Escherichia coli UTI89] gi|115513864|gb|ABJ01939.1| putative GTP-binding protein EngA [Escherichia coli APEC O1] gi|226901387|gb|EEH87646.1| GTP-binding protein EngA [Escherichia sp. 3_2_53FAA] Length = 503 Score = 277 bits (709), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 166/472 (35%), Positives = 260/472 (55%), Gaps = 7/472 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A I G F +DT GI Sbjct: 14 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGI 73 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ LAI EA ++LF++D+++G+ P D AI LR + P +V+NK Sbjct: 74 -DGTEDGVETRMAEQSLLAIEEADVVLFMVDARSGLMPADEAIAKHLRSREKPTFLVANK 132 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGT-SELHSVIFKIFKQKYPNHPLEMIENNK 179 D + + Y+L EI I+A H G S L V+ + P E+ E+ + Sbjct: 133 TDGLDPDQAVVDFYALGLGEIYPIAASHGRGVLSLLEHVLLPWMEDLAPQE--EVDEDAE 190 Query: 180 R-NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 + +EN E + S P+++A+VGRPNVGKSTL NR+LG R++ G T Sbjct: 191 YWAQFEAEENGEEEEEDDFDPQSLPIKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTT 250 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RDS+ I + DTAG+RK +IT+++E+ +V K++Q++ ++++DA Sbjct: 251 RDSIYIPMERDGREYVLIDTAGVRKRGKITDAVEKFSVIKTLQAIEDANVVMLVIDAREG 310 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 QDL ++ + N+G ++V+ +NKWD +S ++ + ++ L I ++ IS Sbjct: 311 ISDQDLSLLGFILNSGRSLVIVVNKWDGLSQEVK--EQVKETLDFRLGFIDFARVHFISA 368 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 G G+ +L SV E R+ TS L + + PP + R +LKY Sbjct: 369 LHGSGVGNLFESVREAYDSSTRRVGTSMLTRIMTMAVEDHQPPLVRGRRVKLKYAHAGGY 428 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I +P+SYKRYL+N R + + G PIR+ F+ +NPY K Sbjct: 429 NPPIVVIHGNQVKDLPDSYKRYLMNYFRKSLDVMGSPIRIQFKEGENPYANK 480 >gi|315300482|gb|EFU59711.1| ribosome-associated GTPase EngA [Escherichia coli MS 16-3] Length = 499 Score = 277 bits (709), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 166/472 (35%), Positives = 259/472 (54%), Gaps = 7/472 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A I G F +DT GI Sbjct: 10 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGI 69 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ LAI EA ++LF++D++AG+ P D AI LR + P +V+NK Sbjct: 70 -DGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANK 128 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGT-SELHSVIFKIFKQKYPNHPLEMIENNK 179 D + + Y+L EI I+A H G S L V+ + P E+ E+ + Sbjct: 129 TDGLDPDQAVVDFYALGLGEIYPIAASHGRGVLSLLEHVLLPWMEDLAPQE--EVDEDAE 186 Query: 180 R-NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 + +EN E S P+++A+VGRPNVGKSTL NR+LG R++ G T Sbjct: 187 YWAQFEAEENGEEEEADDFDPQSLPIKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTT 246 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 R+S+ I + DTAG+RK +IT+++E+ +V K++Q++ ++++DA Sbjct: 247 RESIYIPMERDGREYVLIDTAGVRKRGKITDAVEKFSVIKTLQAIEDANVVMLVIDAREG 306 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 QDL ++ + N+G ++V+ +NKWD +S ++ + ++ L I ++ IS Sbjct: 307 ISDQDLSLLGFILNSGRSLVIVVNKWDGLSQEVK--EQVKETLDFRLGFIDFARVHFISA 364 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 G G+ +L SV E R+ TS L + + PP + R +LKY Sbjct: 365 LHGSGVGNLFESVREAYDSSTRRVGTSMLTRIMTMAVEDHQPPLVRGRRVKLKYAHAGGY 424 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I +P+SYKRYL+N R + + G PIR+ F+ +NPY K Sbjct: 425 NPPIVVIHGNQVKDLPDSYKRYLMNYFRKSLDVMGSPIRIQFKEGENPYANK 476 >gi|220935213|ref|YP_002514112.1| GTP-binding protein EngA [Thioalkalivibrio sp. HL-EbGR7] gi|254783176|sp|B8GTN1|DER_THISH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|219996523|gb|ACL73125.1| GTP-binding protein EngA [Thioalkalivibrio sp. HL-EbGR7] Length = 464 Score = 277 bits (708), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 160/474 (33%), Positives = 251/474 (52%), Gaps = 36/474 (7%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ IA+VG PNVGKSTLFN+L + + A+V + PG+TRDR YG + G + +VDT G+ Sbjct: 1 MLPVIALVGRPNVGKSTLFNQLTRSRDALVADFPGLTRDRQYGPGRVGGFPYMVVDTGGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + G+ ++ M QT+ AI+E+ ++LFL+D + G+T D AI LR + +++V NK Sbjct: 61 S-GEAETLDNLMARQTQQAIDESDVVLFLVDGREGLTAADQAIARSLRTQGKKVLLVVNK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 D A + E ++L F + I+A H G L + + + E+ E Sbjct: 120 TDGVDADQAMAEFHALGFGAPIPIAATHGRGVLGLMNAVHALLP--------EVEEIQAE 171 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 E P +RIA VGRPN GKSTLINR+LG R++ G TRD Sbjct: 172 AERWPG-----------------IRIAFVGRPNAGKSTLINRILGEERVVATEIPGTTRD 214 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ I + + DTAG+R+ SR+ E++E+ +V K++Q++ +++LDA Sbjct: 215 SIFIPFERDGQQYTLIDTAGVRRRSRVHEAIEKFSVVKTLQAIDAAHVVVMVLDAREGIS 274 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVS----DKLNLLQDLRTKAIKNLPQIGDIYINTI 356 +QD ++ V + G A+V+A+NKWD + D++ DL+ LP + I Sbjct: 275 EQDAHLLGVVLDAGRALVVAINKWDGLDPDQRDRIRHELDLK------LPFLDFAEKRFI 328 Query: 357 SGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQI 416 S G G+ DL V +++T++L L+ + + PP + R +L+Y Q Sbjct: 329 SALHGTGVGDLFAHVKRAYDSAFIKVSTNHLTKLLESAMVAHQPPLVSGRRVKLRYAHQG 388 Query: 417 QSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I ++P SYKRYL N R + L G PIR+ F++ +NPY K Sbjct: 389 GQNPPIIVIHGNMTERLPGSYKRYLSNHFRQHLKLVGTPIRLEFKTGENPYAGK 442 >gi|78045106|ref|YP_360738.1| GTP-binding protein EngA [Carboxydothermus hydrogenoformans Z-2901] gi|123575819|sp|Q3AAU6|DER_CARHZ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|77997221|gb|ABB16120.1| GTP-binding protein [Carboxydothermus hydrogenoformans Z-2901] Length = 440 Score = 277 bits (708), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 159/459 (34%), Positives = 253/459 (55%), Gaps = 30/459 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNR++ +++A+V + PG+TRDRLY +A G +F+++DT G+ + Sbjct: 6 VAIVGRPNVGKSTLFNRIIGERIAIVEDTPGVTRDRLYSEAEWQGKVFDLIDTGGLEFSE 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + I ++ +Q E AINEA LILF+ DS+ GIT D A+ LRK + P+I+V+NK+D Sbjct: 66 DL-ITTKVREQIEKAINEADLILFVCDSREGITSTDEAVAKNLRKSDKPVILVANKVDDY 124 Query: 125 I-AQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + NFY++Y L E +SA + +L ++ I K +P E+ Sbjct: 125 LNPPANFYDLYRLGLGEPFPVSAANGTNVGDLLDLV--ISKLNFP-------------ED 169 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 EN ++IAVVGRPNVGKS+L+N LLG R++ G TRD++ Sbjct: 170 YEDENPV-------------VKIAVVGRPNVGKSSLVNALLGEERVVVSDIPGTTRDAID 216 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 ++ P + DTAGMR+ SRI E LE+ +V +S++++R + ++++ A +QD Sbjct: 217 TPMWYQGKPYLLIDTAGMRRKSRIEEDLERYSVNRSIKAIRRADVALLVISAEEGVTEQD 276 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 +I + G V++ +NKWD++ + L + + +S +TG+ Sbjct: 277 KKIAGLIHEYGRGVIIVVNKWDLIEKDAKTADRYKEHIYFELGFLKYAPVIFVSAKTGQR 336 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 L+ LM V ++ + R+ TS LN L++ + NPPP R ++ Y TQI++ PP+F Sbjct: 337 LNKLMELVDRVSFEHQKRVATSILNQVLREAVVLNPPPADRGRPLKIYYATQIETKPPTF 396 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 +F + SY RYL N R NF G ++ + Sbjct: 397 ALFVNDAELMHFSYLRYLENVFRQNFGFEGTTLKFVLRE 435 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 47/162 (29%), Positives = 80/162 (49%), Gaps = 21/162 (12%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI- 60 + IA+VG PNVGKS+L N L+ ++ VV + PG TRD + G + ++DTAG+ Sbjct: 176 VVKIAVVGRPNVGKSSLVNALLGEERVVVSDIPGTTRDAIDTPMWYQGKPYLLIDTAGMR 235 Query: 61 ------ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPI 114 D + S+ + + AI A + L +I ++ G+T D I + + + Sbjct: 236 RKSRIEEDLERYSVNRSIK-----AIRRADVALLVISAEEGVTEQDKKIAGLIHEYGRGV 290 Query: 115 IIVSNKMD---------TRIAQRNFYEIYSLDFKEIVEISAE 147 IIV NK D R + ++E+ L + ++ +SA+ Sbjct: 291 IIVVNKWDLIEKDAKTADRYKEHIYFELGFLKYAPVIFVSAK 332 >gi|163848650|ref|YP_001636694.1| GTP-binding protein EngA [Chloroflexus aurantiacus J-10-fl] gi|222526586|ref|YP_002571057.1| GTP-binding protein EngA [Chloroflexus sp. Y-400-fl] gi|189037140|sp|A9WHH9|DER_CHLAA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|254783145|sp|B9LBT6|DER_CHLSY RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|163669939|gb|ABY36305.1| small GTP-binding protein [Chloroflexus aurantiacus J-10-fl] gi|222450465|gb|ACM54731.1| small GTP-binding protein [Chloroflexus sp. Y-400-fl] Length = 449 Score = 277 bits (708), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 161/470 (34%), Positives = 248/470 (52%), Gaps = 41/470 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST FNRL+ ++ A+V + PG TRDRLYG NG F +VDTAG+ G Sbjct: 6 VAIVGRPNVGKSTFFNRLIGERRAIVEDLPGTTRDRLYGDTFWNGREFTVVDTAGVLFGG 65 Query: 65 N------CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVS 118 IA++ Q E AI EA I+F++D + G+T D + LR + P+++ Sbjct: 66 EDPNLPEAEIARRTRAQAEHAIAEADAIIFIVDGRDGLTAADSDVADVLRTTSKPVVLAV 125 Query: 119 NKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 NK D++ + E Y+L+ E + +SA H LGT ++ + Sbjct: 126 NKCDSQERMLDAVEFYALNLGEPIPMSAFHGLGTGDVL---------------------D 164 Query: 179 KRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 + E P + T E + + LRIA+VGRPNVGKS+L+NRLLG R + S G T Sbjct: 165 RLTEYLPPKTFTQEEE-------RHLRIAIVGRPNVGKSSLLNRLLGQERSVVSSIPGTT 217 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RD + + + PI + DTAG+R+ +I +E+ +V ++++++ C+ ++L+DAT Sbjct: 218 RDPIDTTITYHGEPITLIDTAGIRRAGKIERGIEKYSVLRTLRAIERCDVALLLIDATEG 277 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMV---SDKLNLLQDLRTKAIKNLPQIGDIYINT 355 QD I V ++L +NKWD + S QD +A K + ++++ Sbjct: 278 VTAQDTHIAGMVVEAKKGLILVVNKWDAIEKDSHTYYAFQDQVREAFKFVDYAPIVFVSA 337 Query: 356 ISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTI-FNRYNRLKYIT 414 + TG+ + L+ E+ + R+ TS LN++L++ LQ PP + + RL Y Sbjct: 338 L---TGQRVSHLLDYAREVYVQRQKRVPTSELNNFLREVMLQQPPMAVKKGAHLRLYYAV 394 Query: 415 QIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 Q Q+ PP FL F + SY RYL NRLR + G PI + F+S + Sbjct: 395 QPQTEPPVFLFFANDGELVHWSYARYLENRLRERYGFQGTPIVIVFRSRE 444 >gi|110639446|ref|YP_679655.1| GTP-binding protein EngA [Cytophaga hutchinsonii ATCC 33406] gi|123354325|sp|Q11QK1|DER_CYTH3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|110282127|gb|ABG60313.1| GTP-binding protein [Cytophaga hutchinsonii ATCC 33406] Length = 435 Score = 276 bits (707), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 155/457 (33%), Positives = 242/457 (52%), Gaps = 28/457 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST FNRLV ++A++ + G+TRDR YG+A G F ++DT G G Sbjct: 5 VAIVGRPNVGKSTFFNRLVGARIAIMDDESGVTRDRHYGEAEWCGKFFTVIDTGGYVTGS 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + Q+ DQ ++AI+EA +ILFL+DS G+ D + +R+ P+I+V+NK D Sbjct: 65 DDIFEGQIRDQVDIAIDEADVILFLVDSDVGVHHLDQEFANKIRRSKKPVILVANKSDNN 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 E Y L E+ IS+++ GT EL + FK + EE Sbjct: 125 KRLHMSAEFYELGMGEVWPISSQNGTGTGELLDEVISHFKDE--------------GEED 170 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P + I RIAV+GRPN GKS+ +N LLG NR + Q+G TRDS++ Sbjct: 171 PNKGIP--------------RIAVLGRPNAGKSSYVNALLGTNRSIVTDQAGTTRDSITS 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 +N DTAG+RK SRI E +E ++ +S++++ + ++++DA E QD+ Sbjct: 217 HYNVFGKEFIFVDTAGIRKKSRIKEDVEYYSILRSVKALEESDVCVIMIDAERGIESQDM 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 I+ N +V+ +NKWD++ Q + + L I I IS + L Sbjct: 277 NIIWMAHNNKKGIVILVNKWDLIEKDSKTAQVFQENIREALKPIDYPLIMFISVLNKQRL 336 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 + +++++ + RI TS LN + K NPPP +Y ++KY+TQ+ + P+F Sbjct: 337 FQSVEAIMKVYENRGKRIPTSELNDKILKEIDYNPPPATKQKYVKIKYVTQLPTKSPTFA 396 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 FC P + ESY R+L +++R F G+PI + ++ Sbjct: 397 FFCNLPQYVGESYSRFLEHKIRGYFDFEGVPISIVYR 433 >gi|315646409|ref|ZP_07899527.1| GTP-binding protein EngA [Paenibacillus vortex V453] gi|315278052|gb|EFU41372.1| GTP-binding protein EngA [Paenibacillus vortex V453] Length = 440 Score = 276 bits (707), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 155/455 (34%), Positives = 241/455 (52%), Gaps = 28/455 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 +AIVG PNVGKST+FNRL+ ++A+V + PGITRDR+YG A NG F+++DT GI Sbjct: 5 VVAIVGRPNVGKSTIFNRLIGDRLAIVEDKPGITRDRIYGSAEWNGKAFSVIDTGGIEID 64 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + I K + Q ELAI EA +I+F+ D+KAG+T D + L + P+I+ NK+D Sbjct: 65 GDDMILKSIRMQAELAIEEADVIVFMCDAKAGVTQSDEEVAQILFRSGKPVILSVNKVDN 124 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + YE YSL F + V IS H G +L V+ + N P +E++ +E+ Sbjct: 125 LKRVDDIYEFYSLGFGDPVGISGSHGTGIGDLLDVVVE-------NLP--ELEDDGYDED 175 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 +R+A++GRPNVGKS+L+N +LG R++ +G TRD++ Sbjct: 176 V-------------------IRVALIGRPNVGKSSLVNAILGEERVIVSDVAGTTRDAID 216 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + + DTAGMRK ++ E+ E+ +V ++M+++ + +VL++ +QD Sbjct: 217 TPFEKDGQRYVLIDTAGMRKRGKVYETTEKYSVMRAMRAIERADVVLVLINGEEGIIEQD 276 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 I + G A + +NKWDMV + +Q K + + I +S +T + Sbjct: 277 KHIAGYAYEAGKASLFVVNKWDMVEKEDKTMQQFEKKIRDHFLFMTYAPIVFLSAKTKQR 336 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 L L+ V + R+ T LN + NPPPT R R+ Y TQ+ PP+ Sbjct: 337 LQKLLPVVKHVADQHSLRVQTHLLNDVISDAIAINPPPTDKGRRLRINYSTQVAVKPPTM 396 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 ++F P + SY+RYL N++R F G PIR+ Sbjct: 397 VVFVNDPELMHFSYERYLENKIRAAFDFEGTPIRI 431 >gi|218290942|ref|ZP_03494999.1| small GTP-binding protein [Alicyclobacillus acidocaldarius LAA1] gi|218239107|gb|EED06310.1| small GTP-binding protein [Alicyclobacillus acidocaldarius LAA1] Length = 442 Score = 276 bits (707), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 153/458 (33%), Positives = 238/458 (51%), Gaps = 28/458 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG NVGKSTLFNRLV +++++V + PG+TRDR+YG++ NGV F ++DT GI + Sbjct: 6 VAIVGRANVGKSTLFNRLVGRRVSIVEDTPGVTRDRIYGKSEWNGVPFRVIDTGGIEMDE 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I + Q ++AI+EA +ILF++D + G+T D + LR+ + P+++ NK+D Sbjct: 66 EDEIGNLIRVQAQIAIDEADVILFVVDGRQGVTQADEHVAQVLRRAHKPVVLGVNKLDHV 125 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 YE Y L F E + SAEH GT +L + Sbjct: 126 EQHALSYEFYRLGFGEPIPFSAEHGRGTGDLLDAVVAAL--------------------- 164 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 PK++ E + ++ RIA +GRPNVGKS+L+NRLLG R++ +G TRD+V Sbjct: 165 PKQSGEDEDEDAI-------RIAFIGRPNVGKSSLVNRLLGEERVMVSPVAGTTRDAVDT 217 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + DTAGMR+ ++ E +E+ +V ++++++ + V+LDA +QD Sbjct: 218 PLERDGQSYVLVDTAGMRRKGKVYERIEKYSVLRALRALDRADVAFVVLDAQTGIVEQDK 277 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 R+ + G A+ +NKWD + K P + + +S TG+ + Sbjct: 278 RVAGYALDAGCAIAFVVNKWDAIEKDDKTAHRFEEKIRDEFPFLRFAPVIFVSALTGQRV 337 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 L+ EI + R+ TS LN L Q+ PP+ R R+ Y TQ+ PP+F+ Sbjct: 338 GRLLDVAKEIAEYHAMRVPTSTLNRVLADAQVSVSPPSKGGRRLRIYYGTQVSVKPPTFV 397 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 IF SY+RYL N+LR F G PIR+ ++ Sbjct: 398 IFVNDTELSHFSYERYLENQLREAFGFRGTPIRIVLRA 435 >gi|257465498|ref|ZP_05629869.1| GTP-binding protein EngA [Actinobacillus minor 202] gi|257451158|gb|EEV25201.1| GTP-binding protein EngA [Actinobacillus minor 202] Length = 510 Score = 276 bits (707), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 163/491 (33%), Positives = 262/491 (53%), Gaps = 26/491 (5%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG A I G F ++DT GI Sbjct: 1 MTPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHANIGGYDFIVIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + ++M +Q+ LAI EA ++LFL+D++AG+ P D I +LR++ ++V+NK Sbjct: 61 -DGSEEGVEEKMAEQSLLAIEEADVVLFLVDARAGLVPADVGIAQYLRQREKTTVVVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPL----EMIE 176 D A + E Y L E+ +I+A G ++L + ++ E + Sbjct: 120 TDGIDADSHCAEFYQLGLGEVEQIAAAQGRGVTQLIEQVLAPLAEELGGSQAVENEEELA 179 Query: 177 NNKRNEESPKE-----------------NITSEGKSSVKNISKPLRIAVVGRPNVGKSTL 219 +++ NE + E E ++V++ K ++IA+VGRPNVGKSTL Sbjct: 180 DHEENETTQDEWDRDFDFENEEDAALLDEALEEENAAVED--KNIKIAIVGRPNVGKSTL 237 Query: 220 INRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKS 279 NR+LG R++ G TRDS+ I I DTAG+RK ++ ++E+ +V K+ Sbjct: 238 TNRILGEERVVVYDMPGTTRDSIYIPMERDGQHYTIIDTAGVRKRGKVNLAVEKFSVIKT 297 Query: 280 MQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRT 339 +Q+++ ++ +DA QDL ++ + N G ++V+ +NKWD +S ++ +++ Sbjct: 298 LQAIQDANVVLLTIDAREGISDQDLSLLGFILNAGRSLVIVVNKWDGLSQ--DIKDQVKS 355 Query: 340 KAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNP 399 + + L I ++ IS G G+ +L SV E + +TS L L+ Sbjct: 356 ELDRRLDFIDFARVHFISALHGSGVGNLFESVKEAYACATQKTSTSMLTRILRMAADXXX 415 Query: 400 PPTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 PP + R +LKY +PP +I +K+ +SYKRYL N R + + G PIR+ Sbjct: 416 PPLVNGRRVKLKYAHPGGYNPPIIVIHGNQVDKLADSYKRYLSNYYRKSLKIIGSPIRIQ 475 Query: 460 FQSSKNPYIKK 470 FQ NP+ K Sbjct: 476 FQEGNNPFAGK 486 >gi|33152292|ref|NP_873645.1| GTP-binding protein EngA [Haemophilus ducreyi 35000HP] gi|41017016|sp|Q7VM29|DER_HAEDU RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|33148515|gb|AAP96034.1| conserved putative GTP-binding protein [Haemophilus ducreyi 35000HP] Length = 510 Score = 276 bits (706), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 167/489 (34%), Positives = 261/489 (53%), Gaps = 24/489 (4%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG A I G F ++DT GI Sbjct: 1 MTPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHANIAGHDFIVIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG I ++M +Q+ LAI EA ++LFL+D++AG+ P D I +LR++ ++V+NK Sbjct: 61 -DGTEEGIEEKMAEQSLLAIEEADVVLFLVDARAGLLPADIGIAQYLRQREKTTVVVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF------KQKYPNHPLEM 174 D A + E Y L E+ +I+A G ++L + +Q N Sbjct: 120 TDGIDADSHCGEFYQLGLGEVAKIAAAQGRGVTQLIEQVLSPLATALNSEQADENEENLA 179 Query: 175 IENNK----------RNEESP---KENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLIN 221 E N+ NEE E + E S+ + K ++IA++GRPNVGKSTL N Sbjct: 180 TETNEFDEWNQDFDFNNEEDTALLDEALDEENSESIAD--KNIKIAIIGRPNVGKSTLTN 237 Query: 222 RLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQ 281 R+LG R++ G TRDS+ I I DTAG+RK +I ++E+ +V K++Q Sbjct: 238 RILGEERVVVYDMPGTTRDSIYIPMERDGQEYTIIDTAGVRKRGKINLAVEKFSVIKTLQ 297 Query: 282 SVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKA 341 +++ ++ +DA QDL ++ + N G ++V+ +NKWD +S ++ + ++++ Sbjct: 298 AIQDANVVLLTIDAREGISDQDLSLLGFILNAGRSLVIVVNKWDGLS--YDIKEQVKSEL 355 Query: 342 IKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPP 401 + L I ++ IS G G+ +L SV E + +TS L L ++ PP Sbjct: 356 DRRLDFIDFARVHFISALHGSGVGNLFDSVKEAYACATQKTSTSMLTRILHMAADEHQPP 415 Query: 402 TIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 + R +LKY +PP +I K+ ++YKRYL N R + + G PIR+ FQ Sbjct: 416 LVNGRRVKLKYAHPGGYNPPIIVIHGNQVEKLSDAYKRYLSNYFRKSLKIIGSPIRIQFQ 475 Query: 462 SSKNPYIKK 470 NP+ K Sbjct: 476 EGNNPFAGK 484 >gi|261867584|ref|YP_003255506.1| GTP-binding protein EngA [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412916|gb|ACX82287.1| GTP-binding protein EngA [Aggregatibacter actinomycetemcomitans D11S-1] Length = 510 Score = 276 bits (706), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 167/488 (34%), Positives = 269/488 (55%), Gaps = 29/488 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG A + G F ++DT GI DG Sbjct: 6 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHLAGHDFIVIDTGGI-DGT 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKK-NIPIIIVSNKMDT 123 + ++M +Q+ LAI EA ++LFL+D++AG+T D I ++LR++ N ++V+NK+D Sbjct: 65 EEGVEEKMAEQSLLAIEEADIVLFLVDARAGLTSADIGIANYLRQRQNKTTVVVANKVDG 124 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGT-SELHSVIFKIFKQKYPNHPLEM--IENNK- 179 A + E Y L ++ +I+A G S + V+ + +Q +E + +N Sbjct: 125 IDADSHCAEFYQLGLGDVAQIAASQGRGVVSLMEQVLSPLAEQMTEESAVENPDVSSNDA 184 Query: 180 --------------RNEESP---KENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINR 222 NEE E + E KNI +IA+VGRPNVGKSTL NR Sbjct: 185 DTAEFDEWDEDFDFSNEEDTALLDEELAQEQTPDKKNI----KIAIVGRPNVGKSTLTNR 240 Query: 223 LLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQS 282 +LG +R++ G TRDS+ I N + DTAG+RK ++ ++E+ +V K++Q+ Sbjct: 241 ILGEDRVVVYDLPGTTRDSIYIPMERDNQDYTLIDTAGVRKRGKVHLAVEKFSVIKTLQA 300 Query: 283 VRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAI 342 ++ ++++DA QDL ++ + N G ++V+ +NKWD + ++ ++++ Sbjct: 301 IQDANVVLLVIDARENISDQDLSLLGFILNAGRSLVIVVNKWDGLDTEVK--NRVKSELD 358 Query: 343 KNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPT 402 + L I ++ IS G G+ +L S+ E + ++TTS L LQ ++ PP Sbjct: 359 RRLDFIDFARVHFISALHGSGVGNLFDSIKEAYECATQKMTTSMLTRILQIATEEHQPPM 418 Query: 403 IFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 I R +LKY +PP +I +K+P+SYKRYL N R + + G PIR+ FQ Sbjct: 419 ISGRRVKLKYAHPGGYNPPIIVIHGNQVDKLPDSYKRYLSNHFRRSLKIIGSPIRLQFQE 478 Query: 463 SKNPYIKK 470 NP+ + Sbjct: 479 GNNPFAGR 486 >gi|295696375|ref|YP_003589613.1| ribosome-associated GTPase EngA [Bacillus tusciae DSM 2912] gi|295411977|gb|ADG06469.1| ribosome-associated GTPase EngA [Bacillus tusciae DSM 2912] Length = 451 Score = 276 bits (706), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 159/471 (33%), Positives = 252/471 (53%), Gaps = 48/471 (10%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNR+V ++A+V + PG+TRDRLY A NG F I+DT G+ G Sbjct: 13 VAIVGRPNVGKSTLFNRIVGGRIAIVEDKPGVTRDRLYALASWNGRGFRIIDTGGLDFGG 72 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 + +I K + Q ELA+ EA ++FL+D +GITP D I LR+ P+++ NK+D Sbjct: 73 SDAIVKSIRAQVELALEEADAVIFLVDGISGITPADEEIAGRLRRAGKPVVLAVNKLDNP 132 Query: 124 --RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 IAQ YE + L + ISAEH LG +L + + Sbjct: 133 NRMIAQ---YEFFRLGLGDPFPISAEHGLGIGDLLDAVVRRL------------------ 171 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 P E+ ++ R+AV+GRPNVGKS+L+NRLLG R+L G TRD+ Sbjct: 172 ---PPEDTGEPDHDAI-------RVAVIGRPNVGKSSLVNRLLGEERVLVSEIPGTTRDA 221 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 V + + H + DTAG+RK R+ E E+ +V ++++++ + ++++D + Sbjct: 222 VDTLFEREGHSFILIDTAGLRKRGRVWEDTEKYSVLRALRAIDRSDVCLLVIDGKQGIAE 281 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIY-------IN 354 QD R+ + G AV + +NKWD+V +D +T A++ +I + + Sbjct: 282 QDKRVAGYAVDAGRAVAVVVNKWDLVE------KDDKT-AVRMTEEIRQEFAFMTWAPVV 334 Query: 355 TISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYIT 414 +S +TG+ + ++ V++I + R+ T+ +N ++ + PPP+ R RL Y + Sbjct: 335 FVSAKTGQRVGRILDLVVQIAEQHAMRMPTATVNRVVEDAVQRVPPPSDKGRRLRLYYAS 394 Query: 415 QIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 Q+ PP+F+ F P + SY RYL N+LR F G P+R+ + K+ Sbjct: 395 QVGVKPPTFVFFVNDPELMHFSYIRYLENQLRSAFGFEGTPLRLLIRQRKS 445 >gi|293391945|ref|ZP_06636279.1| GTP-binding protein EngA [Aggregatibacter actinomycetemcomitans D7S-1] gi|290952479|gb|EFE02598.1| GTP-binding protein EngA [Aggregatibacter actinomycetemcomitans D7S-1] Length = 510 Score = 276 bits (706), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 168/485 (34%), Positives = 268/485 (55%), Gaps = 29/485 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG A + G F ++DT GI DG Sbjct: 6 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHLAGHDFIVIDTGGI-DGT 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKK-NIPIIIVSNKMDT 123 + ++M +Q+ LAI EA ++LFL+D++AG+T D I ++LR++ N ++V+NK+D Sbjct: 65 EEGVEEKMAEQSLLAIEEADIVLFLVDARAGLTSADIGIANYLRQRQNKTTVVVANKVDG 124 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGT-SELHSVIFKIFKQKYPNHPLEM--IENNK- 179 A + E Y L +I +I+A G S + V+ + +Q +E + +N Sbjct: 125 IDADSHCAEFYQLGLGDIAQIAASQGRGVVSLMEQVLSPLAEQMTEESAVENPDVSSNDV 184 Query: 180 --------------RNEESP---KENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINR 222 NEE E + E KNI +IA+VGRPNVGKSTL NR Sbjct: 185 DTAEFDEWDEDFDFSNEEDTALLDEELAQEQTPDKKNI----KIAIVGRPNVGKSTLTNR 240 Query: 223 LLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQS 282 +LG +R++ G TRDS+ I N + DTAG+RK ++ ++E+ +V K++Q+ Sbjct: 241 ILGEDRVVVYDLPGTTRDSIYIPMERDNQNYTLIDTAGVRKRGKVHLAVEKFSVIKTLQA 300 Query: 283 VRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAI 342 ++ ++++DA QDL ++ + N G ++V+ +NKWD + ++ ++++ Sbjct: 301 IQDANVVLLVIDARENISDQDLSLLGFILNAGRSLVIVVNKWDGLDTEVK--NRVKSELD 358 Query: 343 KNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPT 402 + L I ++ IS G G+ +L S+ E + ++TTS L LQ ++ PP Sbjct: 359 RRLDFIDFARVHFISALHGSGVGNLFDSIKEAYECATQKMTTSMLTRILQIATEEHQPPM 418 Query: 403 IFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 I R +LKY +PP +I +K+P+SYKRYL N R + + G PIR+ FQ Sbjct: 419 IGGRRVKLKYAHPGGYNPPIIVIHGNQVDKLPDSYKRYLSNHFRRSLKIIGSPIRLQFQE 478 Query: 463 SKNPY 467 NP+ Sbjct: 479 GNNPF 483 >gi|167623303|ref|YP_001673597.1| GTP-binding protein EngA [Shewanella halifaxensis HAW-EB4] gi|189037161|sp|B0TLI8|DER_SHEHH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|167353325|gb|ABZ75938.1| small GTP-binding protein [Shewanella halifaxensis HAW-EB4] Length = 490 Score = 276 bits (706), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 163/474 (34%), Positives = 264/474 (55%), Gaps = 20/474 (4%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A + G F +VDT GI Sbjct: 1 MIPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAHLAGYEFIVVDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG I +M +Q+ AI EA ++LFL D++AG+T D AI LR + +V+NK Sbjct: 61 -DGTEEGIETRMAEQSLAAIEEADVVLFLTDARAGLTAADLAIAQHLRSREKTTFVVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL-------HSVIFKIFKQKYPNHPLE 173 +D A E +SL E+ +++A G + + ++ I KQ+ + E Sbjct: 120 VDGIDADSACAEFWSLGLGEVYQMAAAQGRGVTNMIEYSLAPYAEAMGIVKQEDGDDDEE 179 Query: 174 MIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGS 233 E + E+ ++ + P+++A++G+PNVGKSTL NR+LG R++ Sbjct: 180 EREFTEEEAEAEQKRLQD----------LPIKLAIIGKPNVGKSTLTNRILGEERVVVYD 229 Query: 234 QSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLL 293 + G TRDS+ I + + DTAG+R+ S++ E++E+ +V K++++V ++++ Sbjct: 230 EPGTTRDSIYIPMERQGREYVLIDTAGVRRRSKVHETVEKFSVIKTLKAVEDSNVVLLVI 289 Query: 294 DATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYI 353 DA +QDL ++ V N G A+V+A+NKWD + N+ ++T+ + L I I Sbjct: 290 DAREGIAEQDLGLLGFVLNAGRALVIAVNKWDGIDQ--NVKDRVKTELDRRLGFIDFARI 347 Query: 354 NTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYI 413 + IS G G+ L S+ E R++TS L +Q +Q + PP + R +LKY Sbjct: 348 HFISALHGTGVGHLFESIEEAYDSATRRVSTSMLTRIMQMSQDDHQPPLVNGRRVKLKYA 407 Query: 414 TQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 +PP ++ K+P+SYKRY++N R + + G PI++ FQ NP+ Sbjct: 408 HAGGYNPPIVVVHGNQVKKLPDSYKRYMMNYFRRSLKVIGTPIQLRFQEGGNPF 461 >gi|240949663|ref|ZP_04753998.1| GTP-binding protein EngA [Actinobacillus minor NM305] gi|240295921|gb|EER46597.1| GTP-binding protein EngA [Actinobacillus minor NM305] Length = 510 Score = 276 bits (705), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 162/491 (32%), Positives = 264/491 (53%), Gaps = 26/491 (5%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG A I G F ++DT GI Sbjct: 1 MTPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHANIGGYDFIVIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + ++M +Q+ LAI EA ++LFL+D++AG+ P D I +LR++ ++V+NK Sbjct: 61 -DGSEEGVEEKMAEQSLLAIEEADVVLFLVDARAGLLPADVGIAQYLRQREKTTVVVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQK------------YP 168 D A + E Y L E+ +I+A G ++L + ++ + Sbjct: 120 TDGIDADSHCAEFYQLGLGEVEQIAAAQGRGVTQLIEQVLAPLAEELGGSQAVENEDEFA 179 Query: 169 NHPLEMIENNK-------RNEESPK--ENITSEGKSSVKNISKPLRIAVVGRPNVGKSTL 219 +H ++ NEE + E +S+++ K ++IA+VGRPNVGKSTL Sbjct: 180 DHEENETTQDEWDRDFDFENEEDAALLDEALEEENTSIED--KNIKIAIVGRPNVGKSTL 237 Query: 220 INRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKS 279 NR+LG R++ G TRDS+ I I DTAG+R+ ++ ++E+ +V K+ Sbjct: 238 TNRILGEERVVVYDMPGTTRDSIYIPMERDGQHYTIIDTAGVRRRGKVNLAVEKFSVIKT 297 Query: 280 MQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRT 339 +Q+++ ++ +DA QDL ++ + N G ++V+ +NKWD +S ++ +++ Sbjct: 298 LQAIQDANVVLLTIDAREGISDQDLSLLGFILNAGRSLVIVVNKWDGLSQ--DIKDQVKS 355 Query: 340 KAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNP 399 + + L I ++ IS G G+ +L SV E + +TS L L+ ++ Sbjct: 356 ELDRRLDFIDFARVHFISALHGSGVGNLFESVKEAYACATQKTSTSMLTRILRMAADEHQ 415 Query: 400 PPTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 PP + R +LKY +PP +I +K+ +SYKRYL N R + + G PIR+ Sbjct: 416 PPLVNGRRVKLKYAHPGGYNPPIIVIHGNQVDKLADSYKRYLSNYYRKSLKIIGSPIRIQ 475 Query: 460 FQSSKNPYIKK 470 FQ NP+ K Sbjct: 476 FQEGNNPFAGK 486 >gi|91792618|ref|YP_562269.1| GTP-binding protein EngA [Shewanella denitrificans OS217] gi|122968866|sp|Q12PT0|DER_SHEDO RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|91714620|gb|ABE54546.1| Small GTP-binding protein domain [Shewanella denitrificans OS217] Length = 491 Score = 276 bits (705), Expect = 7e-72, Method: Compositional matrix adjust. Identities = 162/476 (34%), Positives = 264/476 (55%), Gaps = 18/476 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A ++G F +VDT GI Sbjct: 1 MIPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAFLSGYEFIVVDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG I +M +Q+ AI EA ++LFL D++AG+T D AI LR ++ +V+NK Sbjct: 61 -DGSEEGIETKMAEQSLAAIEEADVVLFLTDARAGLTSADLAIAQHLRSRDKTTFVVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPL-EMIENNK 179 +D A E ++L E+ +++A G + + +Y P E + N+ Sbjct: 120 VDGIDADSVCGEFWALGLGEVYQMAAAQGRGVTNM---------IEYALAPYAEAMGLNR 170 Query: 180 RNEESPKENITSEGKSSVKNISK-----PLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQ 234 ++E E + + K P+++A++G+PNVGKSTLINR+LG R++ Sbjct: 171 DDDEQAIEEEREYTEEEAEAEQKRLQDLPIKLAIIGKPNVGKSTLINRILGEERVVVYDA 230 Query: 235 SGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLD 294 G TRDS+ I + + DTAG+R+ S++ E +E+ +V K++++V ++++D Sbjct: 231 PGTTRDSIYIPMEREGREYVLIDTAGVRRRSKVHEVIEKFSVIKTLKAVEDANVVLLVVD 290 Query: 295 ATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYIN 354 A +QDL ++ N G A+V+A+NKWD + + ++++ + L I I+ Sbjct: 291 AREGIAEQDLGLLGFTLNAGRALVIAVNKWDGIDQTVK--DRVKSELDRRLGFIDFAKIH 348 Query: 355 TISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYIT 414 IS G G+ L S+ E R++TS L +Q +Q + PP + R +LKY Sbjct: 349 FISALHGTGVGHLYESIEEAYDSATRRVSTSMLTRVMQMSQDDHQPPLVNGRRVKLKYAH 408 Query: 415 QIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP ++ +K+P+SYKRY++N R + + G PI++ FQ NP+ K Sbjct: 409 AGGYNPPIIVVHGNQVSKLPDSYKRYMMNYFRRSLKVVGTPIQIRFQEGDNPFEGK 464 >gi|146299639|ref|YP_001194230.1| GTP-binding protein EngA [Flavobacterium johnsoniae UW101] gi|238686648|sp|A5FIR0|DER_FLAJ1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|146154057|gb|ABQ04911.1| small GTP-binding protein [Flavobacterium johnsoniae UW101] Length = 437 Score = 276 bits (705), Expect = 7e-72, Method: Compositional matrix adjust. Identities = 152/452 (33%), Positives = 244/452 (53%), Gaps = 27/452 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNRL++++ A+V + G+TRDR YG++ NG F+++DT G G Sbjct: 6 VAIVGRPNVGKSTLFNRLIQRREAIVDSVSGVTRDRNYGKSEWNGKEFSVIDTGGYVRGS 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + ++ Q ELAI+EA +I+F++D + GITP D + LRK P+++ NK+D Sbjct: 66 DDVFEGEIRKQVELAIDEADVIIFVVDVEEGITPMDETVAKLLRKVTKPVLLAVNKVDNA 125 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + +++ E Y+L + ++ GT +L + F P P E + EE Sbjct: 126 MREKDAIEFYNLGLGDYYTFASISGSGTGDLLDALIDAF----PEKP----EPAEAAEEL 177 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P R AVVGRPN GKS+ IN L+G +R + +G TRD++ Sbjct: 178 P-------------------RFAVVGRPNAGKSSFINALIGQDRYIVTDIAGTTRDAIDT 218 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 ++ + DTAG+R+ +++ E LE +V +S++++ + I+++DAT FE QD Sbjct: 219 KFDRFGFEFNLVDTAGIRRKAKVKEDLEFYSVMRSVRAIEHADVCILVIDATRGFEGQDQ 278 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 I VV+ +NKWD+V +D K K L D+ I +S T + L Sbjct: 279 SIFWLAEKNRKGVVILVNKWDLVEKDTMSSRDYEEKIRKELMPFTDVPILFVSALTKQRL 338 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 + + +++ + K RI+TS N ++ K PPP + +Y ++KY Q+ + P F+ Sbjct: 339 LKALEATVQVFENRKQRISTSKFNEYMLKVIEAYPPPAMKGKYVKIKYCMQLPTQTPQFV 398 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 F P + E YKRYL N++R N+ +G+PI Sbjct: 399 FFANLPQYVKEPYKRYLENKIRDNWDFAGVPI 430 >gi|258511668|ref|YP_003185102.1| ribosome-associated GTPase EngA [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478394|gb|ACV58713.1| ribosome-associated GTPase EngA [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 444 Score = 276 bits (705), Expect = 7e-72, Method: Compositional matrix adjust. Identities = 153/458 (33%), Positives = 237/458 (51%), Gaps = 28/458 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG NVGKSTLFNRLV +++++V + PG+TRDR+YG++ NGV F ++DT GI + Sbjct: 6 VAIVGRANVGKSTLFNRLVGRRVSIVEDTPGVTRDRIYGKSEWNGVPFRVIDTGGIEMDE 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + Q ++AI+EA +ILF++D + G+T D + LR+ + P+++ NK+D Sbjct: 66 EDEMGNLIRVQAQIAIDEADVILFVVDGRQGVTQADEHVAQVLRRAHKPVVLGVNKLDHV 125 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 YE Y L F E + SAEH GT +L + K +EE Sbjct: 126 EQHALSYEFYRLGFGEPIPFSAEHGQGTGDLLDAVVAALP--------------KASEED 171 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 E+ +RIA +GRPNVGKS+L+NRLLG R++ +G TRD+V Sbjct: 172 EDED--------------AIRIAFIGRPNVGKSSLVNRLLGEERVMVSPVAGTTRDAVDT 217 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + DTAGMR+ ++ E +E+ +V ++++++ + V+LDA +QD Sbjct: 218 PLERDGQTYMLVDTAGMRRKGKVYERIEKYSVLRALRALDRADVAFVVLDAQTGIVEQDK 277 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 R+ + G A+ +NKWD + K P + + +S TG+ + Sbjct: 278 RVAGYALDAGCAIAFVVNKWDAIEKDDKTAHRFEEKIRDEFPFLRFAPVIFVSALTGQRV 337 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 L+ EI + R+ TS LN L Q+ PP+ R R+ Y TQ+ PP+F+ Sbjct: 338 SRLLDVAKEIAEYHAMRVPTSTLNRVLADAQVSVSPPSKGGRRLRIYYGTQVSVKPPTFV 397 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 IF SY+RYL N+LR F G PIR+ ++ Sbjct: 398 IFVNDTELSHFSYERYLENQLREAFGFRGTPIRIVLRA 435 >gi|90408609|ref|ZP_01216764.1| GTP-binding protein EngA [Psychromonas sp. CNPT3] gi|90310301|gb|EAS38431.1| GTP-binding protein EngA [Psychromonas sp. CNPT3] Length = 488 Score = 276 bits (705), Expect = 8e-72, Method: Compositional matrix adjust. Identities = 161/467 (34%), Positives = 258/467 (55%), Gaps = 6/467 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ IA+VG PNVGKSTLFNRL + + A+V + PG+TRDR YGQA ++ F ++DT GI Sbjct: 1 MLPVIALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLDEDEFIVIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 G I M Q+ LAI+EA +LF++D++ G+ D AI LRK+ + IV+NK Sbjct: 61 T-GDEEGIDSLMAGQSLLAIDEADAVLFMVDARVGLMVADQAIADHLRKQEKKVFIVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 D A E Y+L E+ I+A H G ++ F + + + Sbjct: 120 TDGIDADSACAEFYALGLGEVYHIAAAHGKGVRKMIDTALDGFFDHSEDLDDAEFDLDPE 179 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 E +E + E + + P+++A++G+PNVGKSTLINR+LG R++ Q G TRD Sbjct: 180 LIEDDEEKLLREQQ---RLADLPIKLAIIGKPNVGKSTLINRILGEERVVVFDQPGTTRD 236 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ I + + + DTAG+RK ++ E++E+ +V K+++++ ++++DA Sbjct: 237 SIYIPMSRDDREYILIDTAGVRKRKKVNETVEKFSVIKTLKAIEDANVVLLVIDARDGIA 296 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 +QDL ++ N+G ++V+A+NKWD ++D + ++T+ + L I I+ IS Sbjct: 297 EQDLCLLGYTLNSGRSLVIAVNKWDGMTDYDK--ERVKTELDRRLGFIDFAKIHFISALH 354 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G G+ L SV E RI+TS L + + PP + +R +L+Y +P Sbjct: 355 GTGVGHLYESVEEAYDSSTKRISTSMLTRIMTMAVDDHNPPMVQSRRVKLRYAHAGGYNP 414 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 P +I K+P+SYKRYL+N R + + G PIR+ F+ NP+ Sbjct: 415 PLIVIHGNQVKKLPDSYKRYLMNYFRRSLRIMGTPIRIEFREGTNPF 461 >gi|269118862|ref|YP_003307039.1| small GTP-binding protein [Sebaldella termitidis ATCC 33386] gi|268612740|gb|ACZ07108.1| small GTP-binding protein [Sebaldella termitidis ATCC 33386] Length = 440 Score = 276 bits (705), Expect = 8e-72, Method: Compositional matrix adjust. Identities = 152/457 (33%), Positives = 251/457 (54%), Gaps = 30/457 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFN+L+ +++++V + PG+TRDRLY +G F +VDT G+ Sbjct: 5 VAIVGRPNVGKSTLFNKLIGERLSIVKDVPGVTRDRLYRDVEWSGKEFTLVDTGGLEPKT 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I ++ DQ ++AI+EA +++FL+D K GIT D + + LRKK+ +I+ NK+D Sbjct: 65 QDFIMSKIKDQAQVAIDEADVVVFLVDGKYGITGLDEEVAAVLRKKDKKVIVAVNKIDNY 124 Query: 125 IA-QRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 I Q YE + L F+E++ IS EH + +L I F++ N + EE Sbjct: 125 IKNQDRIYEFFGLGFEEVIGISGEHKVNLGDLLDAIIGKFEKM----------NTVQEEE 174 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 L IAV+GRPN GKS+L+N++L R + +G TRDS+ Sbjct: 175 V-------------------LSIAVLGRPNAGKSSLVNKILNKERSIVSDIAGTTRDSID 215 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + +KN I DTAG+R+ S+I +S+E +V ++++++ + +++LD+T +QD Sbjct: 216 SDFRYKNRKYRIIDTAGIRRKSKIDDSIEYYSVLRAIKAINRADVCVLMLDSTELVTEQD 275 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 R+ + + +++A+NKWD++ + ++ LP + + T+S TG+ Sbjct: 276 KRVAGLIHDEKKPLIIAINKWDLIEKDNSTVKQFTELVKTELPFLSYAPVITMSALTGQR 335 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 + ++ + ++ + + +I+T LN L + NP PT R ++ Y+TQI +PP F Sbjct: 336 VMPILDQINDVFEEYNKKISTGVLNQVLGEMIAVNPVPTRKGRAVKINYVTQIGVAPPRF 395 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCF 460 + F P + SYKRYL N+ R F G PI F Sbjct: 396 VFFANDPELVHFSYKRYLENKFREYFGFEGSPIEFIF 432 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 65/125 (52%), Gaps = 6/125 (4%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + +IA++G PN GKS+L N+++ K+ ++V + G TRD + + I+DTAGI Sbjct: 175 VLSIAVLGRPNAGKSSLVNKILNKERSIVSDIAGTTRDSIDSDFRYKNRKYRIIDTAGIR 234 Query: 62 DGKNCSIAKQMNDQTEL----AINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIV 117 + I + + L AIN A + + ++DS +T D + + + P+II Sbjct: 235 --RKSKIDDSIEYYSVLRAIKAINRADVCVLMLDSTELVTEQDKRVAGLIHDEKKPLIIA 292 Query: 118 SNKMD 122 NK D Sbjct: 293 INKWD 297 >gi|253699395|ref|YP_003020584.1| GTP-binding protein EngA [Geobacter sp. M21] gi|259645878|sp|C6E0Y6|DER_GEOSM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|251774245|gb|ACT16826.1| small GTP-binding protein [Geobacter sp. M21] Length = 440 Score = 276 bits (705), Expect = 8e-72, Method: Compositional matrix adjust. Identities = 152/458 (33%), Positives = 243/458 (53%), Gaps = 28/458 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTLFNRLV ++ A+V + PG+TRDR Y + V F +VDT G Sbjct: 5 IAIVGRPNVGKSTLFNRLVGRRKAMVDDMPGVTRDRNYAEVNRFDVPFILVDTGGFEPET 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + +QM +Q+ A++EA LILF++D++ G+TP D + LR+ N P+ + NK+D Sbjct: 65 SDRLLQQMREQSRFAMDEADLILFVMDARGGLTPADRDVVDMLRRINKPVFYIINKVDGE 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + YSL I ISAEH+ G +L + L I ++ E+ Sbjct: 125 KQEAEAGDFYSLGVDHIHTISAEHNRGVGDLMDEV------------LAAIPYDR--EKE 170 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 E IT RIAVVGRPNVGKSTL+NRLLGY R++ +G TRD+V Sbjct: 171 SDEEIT--------------RIAVVGRPNVGKSTLVNRLLGYERVVANPTAGTTRDAVDT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + P + DTAG+R+ + + +E+ +V +++S+ + +++L+A +QD Sbjct: 217 RFTVNKKPYLLIDTAGIRRKGKTVQKVEKYSVMDALRSIERADVVLIVLNAEEGVTEQDS 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 +I + G + +NKWD ++ + + + +N + I +S TG+ Sbjct: 277 KIAGYAYEAGRGCIFVVNKWDTLAKDNSSIAKFTEEIRRNFKYLPFAPILFVSAETGQRT 336 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 ++ V ++ + + R+TT LN + +N P R + + TQ+ PPSF+ Sbjct: 337 GKIIAEVDQVMEQYCKRVTTGELNRVFTQAVDENHAPLSAGRRVKFYFATQVAVKPPSFV 396 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 +F P I SY+RY++NR R F +G P+++ F+ Sbjct: 397 VFTNCPEGIHFSYERYIMNRFREAFGFNGTPLKLIFRG 434 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 56/178 (31%), Positives = 89/178 (50%), Gaps = 17/178 (9%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI- 60 I IA+VG PNVGKSTL NRL+ + V G TRD + + +N + ++DTAGI Sbjct: 175 ITRIAVVGRPNVGKSTLVNRLLGYERVVANPTAGTTRDAVDTRFTVNKKPYLLIDTAGIR 234 Query: 61 ADGKNCSIAKQMNDQTEL-AINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 GK ++ + L +I A ++L +++++ G+T D I + + I V N Sbjct: 235 RKGKTVQKVEKYSVMDALRSIERADVVLIVLNAEEGVTEQDSKIAGYAYEAGRGCIFVVN 294 Query: 120 KMDT------RIAQ------RNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQ 165 K DT IA+ RNF L F I+ +SAE T ++ + + ++ +Q Sbjct: 295 KWDTLAKDNSSIAKFTEEIRRNF---KYLPFAPILFVSAETGQRTGKIIAEVDQVMEQ 349 >gi|71279565|ref|YP_270897.1| GTP-binding protein EngA [Colwellia psychrerythraea 34H] gi|123733686|sp|Q47WC5|DER_COLP3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|71145305|gb|AAZ25778.1| GTP-binding protein EngA [Colwellia psychrerythraea 34H] Length = 498 Score = 275 bits (704), Expect = 8e-72, Method: Compositional matrix adjust. Identities = 168/493 (34%), Positives = 263/493 (53%), Gaps = 39/493 (7%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + + A+V ++PG+TRDR YGQA + F ++DT GI Sbjct: 1 MLPVVALVGRPNVGKSTLFNRLTRSRDALVADYPGLTRDRQYGQAEVEEHPFIVIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 +G I +M +Q+ +AI EA +LFL+D++ G+T DH I LRK+N I +V+NK Sbjct: 61 -NGDEQGIDVKMAEQSLMAIEEADAVLFLVDARDGLTAADHGIADHLRKQNKKIFVVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIV-EISAEHDLGTSELHSV-----IFKIFKQK-------- 166 +D E YSL E V +I+A H G ++L ++ I ++ K K Sbjct: 120 IDGIHGDSAVAEFYSLGLGEHVHQIAAAHGRGVTQLLTIALTPHIEELGKPKVEEGEASE 179 Query: 167 -------YPNHPLEMIENN--KRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKS 217 + + +E+ E K+ E+ P+EN +++A++GRPNVGKS Sbjct: 180 GEFDDAFFSDKDVELTEEELAKKLEDEPQEN-------------DKIKLAIIGRPNVGKS 226 Query: 218 TLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVK 277 TL NR+LG R++ G TRDSV I + DTAG+R+ +T+ +E+ +V Sbjct: 227 TLTNRILGEERVVVYDMPGTTRDSVYIPMERNGREYTLIDTAGIRRRKNVTDVVEKYSVI 286 Query: 278 KSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDL 337 K+++++ ++++DA QDL ++ + G ++VLA+NKWD + D + Sbjct: 287 KTLRAIEDANVCLLIIDAQEGISDQDLSLLGFILEAGRSLVLAVNKWDGLEDHEK--DRI 344 Query: 338 RTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQ 397 +T+ + L I ++ IS G G+ L SV E RI+T+ + L Sbjct: 345 KTELDRRLGFIDFARVHFISALHGTGVGHLYESVEEAFVSATKRISTAMVTKILDMAVFD 404 Query: 398 NPPPTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIR 457 + PP R +LKY +PP +I K+P SYKRYL+N R + + G PIR Sbjct: 405 HQPPLHQGRRIKLKYAHAGGYNPPIIIIHGNSAKKLPMSYKRYLMNYYRKSLKMMGTPIR 464 Query: 458 MCFQSSKNPYIKK 470 + F+ + NP+ K Sbjct: 465 IQFKDTLNPFAGK 477 >gi|215487861|ref|YP_002330292.1| GTP-binding protein EngA [Escherichia coli O127:H6 str. E2348/69] gi|254783152|sp|B7UGV7|DER_ECO27 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|215265933|emb|CAS10342.1| predicted GTP-binding protein [Escherichia coli O127:H6 str. E2348/69] Length = 490 Score = 275 bits (704), Expect = 9e-72, Method: Compositional matrix adjust. Identities = 166/472 (35%), Positives = 259/472 (54%), Gaps = 7/472 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A I G F +DT GI Sbjct: 1 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ LAI EA ++LF++D++AG+ P D AI LR + P +V+NK Sbjct: 61 -DGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGT-SELHSVIFKIFKQKYPNHPLEMIENNK 179 D + + Y+L EI I+A H G S L V+ + P E+ E+ + Sbjct: 120 TDGLDPDQAVVDFYALGLGEIYPIAASHGRGVLSLLEHVLLPWMEDLAPQE--EVDEDAE 177 Query: 180 R-NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 + +EN E + S P+++A+VGRPNVGKSTL NR+LG R++ G T Sbjct: 178 YWAQFEAEENGEEEEEDDFDPQSLPIKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTT 237 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RDS+ I + DTAG+RK +IT+++E+ +V K++Q++ ++++DA Sbjct: 238 RDSIYIPMERDGREYVLIDTAGVRKRGKITDAVEKFSVIKTLQAIEDANVVMLVIDAREG 297 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 QDL ++ + N+G ++V+ +NKWD +S ++ + ++ L I ++ IS Sbjct: 298 ISDQDLSLLGFILNSGRSLVIVVNKWDGLSQEVK--EQVKETLDFRLGFIDFARVHFISA 355 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 G G+ +L SV E R+ TS L + + PP + R +LKY Sbjct: 356 LHGSGVGNLFESVREAYDSSTRRVGTSMLTRIMTMAVEDHQPPLVRGRRVKLKYAHAGGY 415 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I + +SYKRYL+N R + + G PIR+ F+ +NPY K Sbjct: 416 NPPIVVIHGNQVKDLSDSYKRYLMNYFRKSLDVMGSPIRIQFKEGENPYANK 467 >gi|332992293|gb|AEF02348.1| GTP-binding protein Der [Alteromonas sp. SN2] Length = 481 Score = 275 bits (704), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 157/471 (33%), Positives = 254/471 (53%), Gaps = 14/471 (2%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + A+V ++PG+TRDR YGQA F +VDT GI Sbjct: 1 MLPVVALVGRPNVGKSTLFNRLTNTRDALVADYPGLTRDRKYGQAKFEQRQFIVVDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 G I +M Q+ LAI EA ++L L+D++AG+ P D I +R+ N + +V+NK Sbjct: 61 T-GDEEGIDAEMAQQSLLAIEEADVVLLLVDARAGLLPADQGIADHIRRLNKKVFVVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D + Y+L + +I+A H G S+L + +P+ Sbjct: 120 VDGIDGDSESADFYALGLGTVKQIAAAHGRGVSQLLQDALVPLEASFPDM---------- 169 Query: 181 NEESPKENITSEGKSSVKNI-SKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITR 239 + + + +K + +P+++A+VG+PNVGKSTL NR+LG R++ G TR Sbjct: 170 RIVEEVQEEEIDAEEQLKRLQEQPIKLAIVGKPNVGKSTLTNRILGEERVVVFDLPGTTR 229 Query: 240 DSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPF 299 DSV I + DTAG+RK ++ E++E+ ++ K++Q++ ++++DA Sbjct: 230 DSVFIPMERDEREYILIDTAGVRKRRKVNEAVEKFSIVKTLQAIDEANVVLMIIDAREGI 289 Query: 300 EKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGR 359 QDL ++ V N+G ++V+A+NKWD +S ++ D++ + + L I ++ IS Sbjct: 290 TDQDLSLLGFVLNSGRSLVIAVNKWDGLS--TDIKNDIKRELDRRLGFIDFARLHFISAM 347 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 G G+ +L SV E RI TS L ++ Q + PP + R ++KY + Sbjct: 348 HGTGVGNLFESVQEAYLSATKRINTSMLTQIMEMAQDDHQPPLVRGRRVKMKYAHAGGYN 407 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 PP +I + +P SYKR+L+N R + G PIR+ F+ NP+ K Sbjct: 408 PPVIVIHGNQVDDLPTSYKRFLMNYFRKALQVMGTPIRIEFREGANPFEGK 458 >gi|312879956|ref|ZP_07739756.1| ribosome-associated GTPase EngA [Aminomonas paucivorans DSM 12260] gi|310783247|gb|EFQ23645.1| ribosome-associated GTPase EngA [Aminomonas paucivorans DSM 12260] Length = 447 Score = 275 bits (703), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 158/462 (34%), Positives = 248/462 (53%), Gaps = 28/462 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKS+LFNRL+ K++A+V + PG+TRDRLYG+A +G F +VDT GI Sbjct: 4 IALVGRPNVGKSSLFNRLIGKRLAIVDDIPGVTRDRLYGEAEWDGKRFYLVDTGGIEASS 63 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 K + Q +A+ E+ ++F++D K G+TP D AI LR+ P+++ NK+D Sbjct: 64 PHPFEKAIEHQVRIALEESDGVVFILDGKDGVTPGDEAIADRLRRAGKPVVVAMNKLDND 123 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 N E Y+L F ++ +S EH+ +L I + + P E S Sbjct: 124 KRDENLAEAYALGFPCVLGMSVEHNRNMGDLLDEISALLPEAEPE------------ERS 171 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P E P+R+A+VGRPNVGKS+L N LLG R L G TRD+V Sbjct: 172 PDE---------------PVRVALVGRPNVGKSSLFNSLLGEERTLVSDIPGTTRDTVDS 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 WK + I DTAG+R+ SR+ +LE + ++ Q+V + T+VLLDA +QD Sbjct: 217 LLVWKGMNLRIMDTAGLRRKSRVDGALEYYSTVRTFQAVDRSDVTVVLLDAQELLAEQDK 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 R+V V + G +VL +NKWD++ +L +R + + LP + + +S +TG G+ Sbjct: 277 RLVGHVLDRGKGLVLGVNKWDLLPPTEDLGDRIRDRIREELPLVRHAPVVFLSAKTGRGV 336 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKT-QLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 ++ V +++ + + TS LN +++T + + P + ++ Y+TQ ++ PP+F Sbjct: 337 QRVLPYVKTVDENRRRHLKTSVLNKLVRETLEFERMPGDGKGHFLKILYLTQAETVPPTF 396 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 L F + + R L LR SG P+R+ F+ +N Sbjct: 397 LFFVNDRRLVERPFIRRLDRLLRELDDFSGTPLRIWFRDREN 438 >gi|260773381|ref|ZP_05882297.1| GTP-binding protein EngA [Vibrio metschnikovii CIP 69.14] gi|260612520|gb|EEX37723.1| GTP-binding protein EngA [Vibrio metschnikovii CIP 69.14] Length = 496 Score = 275 bits (703), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 167/476 (35%), Positives = 264/476 (55%), Gaps = 10/476 (2%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YGQA + F ++DT GI Sbjct: 1 MIPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGENEFIVIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M Q+ AI+EA ++LF++D +AG+T D AI LR+ I+V NK Sbjct: 61 -DGTEEGVETKMAQQSLAAIDEADVVLFMVDGRAGLTSADEAIAQHLRRIEKNAILVVNK 119 Query: 121 MDTRIAQRNFYEIYSLDF-KEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNK 179 +D A E + L ++ +I+A H G + L ++ N L+ +E+ Sbjct: 120 VDGIDADAACAEFWQLGMGSQMYQIAAAHGRGVAVLIDRALNPLAEQM-NEELQNLEDLT 178 Query: 180 R----NEESPKENITSEGKSSVKNI-SKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQ 234 +E E E ++ K + +P+++A++GRPNVGKSTL NR+LG R++ Sbjct: 179 EFVDTDEPEQLEYTEEEAEAEFKRLQDQPIKLAIIGRPNVGKSTLTNRILGEERVVVYDM 238 Query: 235 SGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLD 294 G TRDS+ I + + DTAG+R+ I E++E+ +V K+++++ ++++D Sbjct: 239 PGTTRDSIYIPMQRDDREYVLIDTAGVRRRKSINETVEKFSVVKTLKAIEDANVVLLVID 298 Query: 295 ATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYIN 354 A QDL ++ N G +VV+A+NKWD +S+ + + ++ + + L + I+ Sbjct: 299 ARENISDQDLSLLGFTLNAGRSVVIAINKWDGLSNDIK--ERVKKELDRRLGFVDFARIH 356 Query: 355 TISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYIT 414 IS G G+ L SV E + TR+ TS L ++ + PP I R +LKY Sbjct: 357 FISALHGTGVGHLFESVQEAYRSATTRVGTSVLTRIMKMATDDHQPPLIRGRRVKLKYAH 416 Query: 415 QIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I N++P SYKRYL+N R + + G PIR+ FQSS+NP+ K Sbjct: 417 AGGYNPPIIVIHGNQVNELPHSYKRYLMNYYRKSLEIMGTPIRIQFQSSENPFENK 472 >gi|269926863|ref|YP_003323486.1| small GTP-binding protein [Thermobaculum terrenum ATCC BAA-798] gi|269790523|gb|ACZ42664.1| small GTP-binding protein [Thermobaculum terrenum ATCC BAA-798] Length = 448 Score = 275 bits (703), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 156/467 (33%), Positives = 240/467 (51%), Gaps = 32/467 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST FNRL+ ++ A+V + PG TRDRLYG+ G F IVDT G+ Sbjct: 7 VAIVGRPNVGKSTFFNRLLGERAAIVQDEPGTTRDRLYGEVSWRGRTFTIVDTGGLETSV 66 Query: 65 NCS------IAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVS 118 + S I + + +Q E AI EA LI+F+ID K G TP D+ I LR+ N P I+ Sbjct: 67 DSSSDEPDPIRRMVREQAEQAIREADLIVFMIDVKTGPTPSDYEIADLLRRTNKPTILAV 126 Query: 119 NKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 NK D+ + E YSL + + +SA H +G + L + + Sbjct: 127 NKADSPQREYEAVEFYSLGMGDPIPVSAYHGMGITPLLDRVVE----------------- 169 Query: 179 KRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 + E + + +RIA+VGRPNVGKS L+N +LG R + G T Sbjct: 170 ---------LLPPEEEEEEEETGPVVRIAIVGRPNVGKSRLLNAILGQERAIVSDVPGTT 220 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RD V W + I + DTAG+R+ ++ +EQ +V ++++++ + ++L+DA Sbjct: 221 RDPVDTEIQWGDQRIVLIDTAGIRRRGKVESGIEQYSVFRTLRAIGRSDVVLLLIDAQEG 280 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 QD I V +VL +NKWD+V N + + +P + + IS Sbjct: 281 LTAQDEHIAGYVLEEYKGLVLVVNKWDLVEKDENTANEYVAHLRERMPFVDWAPVRFISA 340 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 + +G+ L+ + L+I + + RITT+ LN L+ + PP+ ++ + Y+TQ Sbjct: 341 KYSQGIPGLVETALKIARERERRITTAALNRLLRDAVAAHQPPSKPGKWLKFYYVTQADV 400 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 PP+F+ F P ++ YKRYL NR+R + G PIRM F+S + Sbjct: 401 KPPTFVFFVNDPKQVQFGYKRYLENRIREAYGFEGTPIRMYFRSRQE 447 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 54/176 (30%), Positives = 89/176 (50%), Gaps = 11/176 (6%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI- 60 + IAIVG PNVGKS L N ++ ++ A+V + PG TRD + + ++DTAGI Sbjct: 185 VVRIAIVGRPNVGKSRLLNAILGQERAIVSDVPGTTRDPVDTEIQWGDQRIVLIDTAGIR 244 Query: 61 ADGKNCSIAKQMND-QTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 GK S +Q + +T AI + ++L LID++ G+T D I ++ ++ +++V N Sbjct: 245 RRGKVESGIEQYSVFRTLRAIGRSDVVLLLIDAQEGLTAQDEHIAGYVLEEYKGLVLVVN 304 Query: 120 KMDTRIAQRNFYEIYS---------LDFKEIVEISAEHDLGTSELHSVIFKIFKQK 166 K D N Y +D+ + ISA++ G L KI +++ Sbjct: 305 KWDLVEKDENTANEYVAHLRERMPFVDWAPVRFISAKYSQGIPGLVETALKIARER 360 >gi|313206833|ref|YP_004046010.1| ribosome-associated GTPase enga [Riemerella anatipestifer DSM 15868] gi|312446149|gb|ADQ82504.1| ribosome-associated GTPase EngA [Riemerella anatipestifer DSM 15868] gi|315023907|gb|EFT36909.1| GTP-binding protein EngA [Riemerella anatipestifer RA-YM] gi|325335727|gb|ADZ12001.1| Predicted GTPase [Riemerella anatipestifer RA-GD] Length = 435 Score = 275 bits (703), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 153/457 (33%), Positives = 242/457 (52%), Gaps = 28/457 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNRL++++ A+V + G+TRDR YG++ NGV F ++DT G G Sbjct: 5 VAIVGRPNVGKSTLFNRLLERREAIVDSVAGVTRDRHYGKSEWNGVEFTVIDTGGYDVGT 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +++ Q +LA++EA I+F+++ + G+T D I LR+ N PI IV NK+D+ Sbjct: 65 DDIFEEEIRHQVQLAVDEATSIIFMLNVEEGLTDTDQEIHELLRRSNKPIYIVVNKVDSA 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + E Y L ++ +S+ GT +L + F P + + Sbjct: 125 KEELPATEFYQLGIEKYYTLSSATGSGTGDLLDAVVADFPTTEYKDPFDGLP-------- 176 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 RI + GRPNVGKSTL N LL R + +G TRDS+ Sbjct: 177 --------------------RITIAGRPNVGKSTLTNALLDNKRNIVTDIAGTTRDSIET 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 +N H + DTAGMRK S+++E+LE +V +S++++ + ++++DAT +E QD+ Sbjct: 217 IYNKFGHEFVLVDTAGMRKKSKVSENLEFYSVMRSVRAIEHSDVVVIMVDATQGWESQDM 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 I +V+ +NKWD+V + N ++D K + Q D+ I IS T + + Sbjct: 277 NIFGIAQKNRKGIVILVNKWDLVEKETNTMRDFENNIKKRIGQFSDVPILFISALTKQRI 336 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 + +E+ + K +I TS LN + PPP I +Y ++KY Q+ + P F+ Sbjct: 337 LKAVEVAMEVYENRKKKIKTSKLNEVMLPVFEHTPPPAIKGKYIKIKYCVQLPTPSPQFV 396 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 FC P + E YKR+ N+LR F +G PI + F+ Sbjct: 397 FFCNLPQYVKEPYKRFTENQLRKEFGFTGAPIEVYFR 433 >gi|261340815|ref|ZP_05968673.1| ribosome-associated GTPase EngA [Enterobacter cancerogenus ATCC 35316] gi|288317241|gb|EFC56179.1| ribosome-associated GTPase EngA [Enterobacter cancerogenus ATCC 35316] Length = 491 Score = 275 bits (703), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 163/474 (34%), Positives = 261/474 (55%), Gaps = 10/474 (2%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A + G F +DT GI Sbjct: 1 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ LAI EA ++LF++D++AG+ P D AI LR + P +V+NK Sbjct: 61 -DGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADSAIAKHLRSREKPTFLVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLG-TSELHSVIFKIFKQKYPNHPLEMIENNK 179 D A + + +SL I I+A H G TS L +V+ + +P E ++ + Sbjct: 120 TDGIDADQAVADFWSLGLGNIYPIAASHGRGVTSLLETVLLPWVDEV---NPPEEVDEDA 176 Query: 180 RNEESPKENITSEGKSSVKNISK---PLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSG 236 + N E + N + P+++A+VGRPNVGKSTL NR+LG R++ G Sbjct: 177 EYWAQFEANEAGEEEEPEDNFNPQDLPIKLAIVGRPNVGKSTLTNRILGEERVVVYDMPG 236 Query: 237 ITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDAT 296 TRDS+ I + DTAG+RK +IT+ +E+ +V K++Q++ ++++DA Sbjct: 237 TTRDSIYIPMQRDEREFVLIDTAGVRKRGKITDVVEKFSVIKTLQAIEDANVVLLVIDAR 296 Query: 297 IPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTI 356 QDL ++ + N+G ++V+ +NKWD +S+++ + ++ L I ++ I Sbjct: 297 EGISDQDLSLLGFILNSGRSLVIVVNKWDGLSNEVR--EQVKETLDFRLGFIDFARVHFI 354 Query: 357 SGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQI 416 S G G+ +L SV E R +T+ L + + PP + R +LKY Sbjct: 355 SALHGSGVGNLFESVREAYDSSTRRQSTAMLTRIMNMAAEDHQPPLVRGRRVKLKYAHAG 414 Query: 417 QSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I +P+SYKRYL+N R + + G PIR+ F+ +NP+ K Sbjct: 415 GYNPPIVVIHGNQVKDLPDSYKRYLMNYFRKSLDVMGTPIRIQFKEGENPFANK 468 >gi|254478784|ref|ZP_05092152.1| putative GTPase [Carboxydibrachium pacificum DSM 12653] gi|214035296|gb|EEB76002.1| putative GTPase [Carboxydibrachium pacificum DSM 12653] Length = 439 Score = 275 bits (702), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 157/453 (34%), Positives = 253/453 (55%), Gaps = 30/453 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNR++K+++++V + PG+TRDR+YG A F +VDT G+ Sbjct: 6 VAIVGRPNVGKSTLFNRILKRRISIVEDIPGVTRDRIYGNAEWLNRKFILVDTGGLDPDP 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 I ++ Q E AI A LILF++D++ G+ P D I + LRK +I+V NK+D+ Sbjct: 66 KDVIFSKVKLQVEAAIEAADLILFVVDAREGLVPEDEEIANMLRKTKKEVILVCNKVDSF 125 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + +FY+ + L E + ISA + LG EL + K + EN+ EE Sbjct: 126 KEMPASFYDFFKLGLGEPIPISASNGLGIGELLDEVIK-----------RLPENDVEYEE 174 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 + ++IAV+GRPNVGKS+L+NR+LG R++ G TRD++ Sbjct: 175 ------------------ETIKIAVIGRPNVGKSSLVNRILGEERVIVSDIPGTTRDAID 216 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + + DTAG+R+ SRI+ES+E+ +V +++ ++ + ++++DAT +QD Sbjct: 217 TPFTKDGRNYILIDTAGIRRKSRISESIERYSVLRALAAIERADICLLMIDATEGPTEQD 276 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 +I F G +++ +NKWD+V N ++ + L I I IS +TG+ Sbjct: 277 TKIAGYAFENGKGIIILVNKWDIVEKDSNTYKEYTEMIREKLAFISFAPILFISAKTGQR 336 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 + ++ +V ++ + + RITT LN+ L + L PPP+ R ++ Y TQ+ + PP+F Sbjct: 337 IHKVLETVDKVWEEYNKRITTGLLNNVLNEAMLMFPPPSSKGRPVKIYYATQVGTKPPTF 396 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 +IF P + SY R+L N +R NF G+PI Sbjct: 397 VIFVNEPELLHFSYVRFLENTIRQNFGFEGVPI 429 >gi|127512226|ref|YP_001093423.1| GTP-binding protein EngA [Shewanella loihica PV-4] gi|166225856|sp|A3QCG6|DER_SHELP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|126637521|gb|ABO23164.1| small GTP-binding protein [Shewanella loihica PV-4] Length = 489 Score = 275 bits (702), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 156/467 (33%), Positives = 258/467 (55%), Gaps = 6/467 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI +A+VG PNVGKSTLFNRL + + A+V ++PG+TRDR YG+A ++G F +VDT GI Sbjct: 1 MIPVVALVGRPNVGKSTLFNRLTRTRDALVADYPGLTRDRKYGRAHLSGYEFIVVDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG I +M +Q+ AI EA ++LFL D++AG+T D AI LR++ +V+NK Sbjct: 61 -DGTEEGIETRMAEQSLAAIEEADVVLFLTDARAGLTAADEAIAEHLRRREKTTFVVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D A E ++L E+ +++A G + + + + L + Sbjct: 120 VDGIDADSACGEFWALGLGEVYQMAAAQGRGVTNMIEYALTPYAEAMG---LTRDGEGEE 176 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 + + + P+++A++G+PNVGKSTL NR+LG R++ + G TRD Sbjct: 177 EADERQYTEEEAEAEQQRLQDLPIKLAIIGKPNVGKSTLTNRILGEERVVVYDEPGTTRD 236 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ I I DTAG+R+ S++ E++E+ +V K++++V ++++DA Sbjct: 237 SIYIPLERDGQEYVIIDTAGVRRRSKVHETVEKFSVIKTLKAVEDANVVLLVVDAREGIA 296 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 +QDL ++ N G A+V+A+NKWD + ++ + ++++ + L I I+ IS Sbjct: 297 EQDLGLLGFALNVGRALVIAVNKWDGIDQ--DVKERVKSELDRRLGFIDFARIHFISALH 354 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G G+ L SV E + R++TS L +Q Q + PP + R +LKY +P Sbjct: 355 GTGVGHLFESVEEAYESATRRVSTSMLTRIMQMAQDDHQPPLVNGRRVKLKYAHAGGYNP 414 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 P +I K+P+SYKR+++N R + + G PI++ FQ NP+ Sbjct: 415 PIVVIHGNQVKKLPDSYKRFMMNYYRRSLKVMGTPIQVRFQEGGNPF 461 >gi|197117132|ref|YP_002137559.1| GTP-binding protein EngA [Geobacter bemidjiensis Bem] gi|238690874|sp|B5EE25|DER_GEOBB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|197086492|gb|ACH37763.1| GTPase EngA [Geobacter bemidjiensis Bem] Length = 440 Score = 275 bits (702), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 152/458 (33%), Positives = 243/458 (53%), Gaps = 28/458 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTLFNRLV ++ A+V + PG+TRDR Y + V F +VDT G Sbjct: 5 IAIVGRPNVGKSTLFNRLVGRRKAMVDDMPGVTRDRNYAEVNRFDVPFILVDTGGFEPET 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + +QM +Q+ A++EA LILF++D++ G+TP D + LR+ N P+ + NK+D Sbjct: 65 SDRLLQQMREQSRFAMDEADLILFIMDARGGLTPADRDVVDMLRRINKPVFYIINKVDGE 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + YSL I ISAEH+ G +L + L I ++ E+ Sbjct: 125 KQEAEAGDFYSLGVDHIHTISAEHNRGVGDLMDEV------------LAAIPYDR--EKE 170 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 E IT RIAVVGRPNVGKSTL+NRLLGY R++ +G TRD+V Sbjct: 171 LDEEIT--------------RIAVVGRPNVGKSTLVNRLLGYERVVANPTAGTTRDAVDT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + P + DTAG+R+ + + +E+ +V +++S+ + +++L+A +QD Sbjct: 217 RFTVNKKPYLLIDTAGIRRKGKTVQKVEKYSVMDALRSIERADVVLIVLNAEEGVTEQDS 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 +I + G + +NKWD ++ + + + +N + I +S TG+ Sbjct: 277 KIAGYAYEAGRGCIFVVNKWDTLAKDNSSIAKFTEEIRRNFKYLPFAPILFVSAETGQRT 336 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 ++ V ++ + + R+TT LN + +N P R + + TQ+ PPSF+ Sbjct: 337 GKIIAEVDQVMEQYCKRVTTGELNRVFTQAVDENHAPLSAGRRVKFYFATQVAVKPPSFV 396 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 +F P I SY+RY++NR R F +G P+++ F+ Sbjct: 397 VFTNCPEGIHFSYERYIMNRFREAFGFNGTPLKLIFRG 434 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 56/178 (31%), Positives = 89/178 (50%), Gaps = 17/178 (9%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI- 60 I IA+VG PNVGKSTL NRL+ + V G TRD + + +N + ++DTAGI Sbjct: 175 ITRIAVVGRPNVGKSTLVNRLLGYERVVANPTAGTTRDAVDTRFTVNKKPYLLIDTAGIR 234 Query: 61 ADGKNCSIAKQMNDQTEL-AINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 GK ++ + L +I A ++L +++++ G+T D I + + I V N Sbjct: 235 RKGKTVQKVEKYSVMDALRSIERADVVLIVLNAEEGVTEQDSKIAGYAYEAGRGCIFVVN 294 Query: 120 KMDT------RIAQ------RNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQ 165 K DT IA+ RNF L F I+ +SAE T ++ + + ++ +Q Sbjct: 295 KWDTLAKDNSSIAKFTEEIRRNF---KYLPFAPILFVSAETGQRTGKIIAEVDQVMEQ 349 >gi|183599734|ref|ZP_02961227.1| hypothetical protein PROSTU_03237 [Providencia stuartii ATCC 25827] gi|188021993|gb|EDU60033.1| hypothetical protein PROSTU_03237 [Providencia stuartii ATCC 25827] Length = 490 Score = 275 bits (702), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 165/473 (34%), Positives = 258/473 (54%), Gaps = 8/473 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A + G F I+DT GI Sbjct: 1 MIPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGHEFIIIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + M Q+ AI EA ++LF++D++AG+ P D I LR + +V+NK Sbjct: 61 -DGTEEGVETHMAAQSLQAIEEADVVLFMVDARAGLMPADEGIAKHLRSRKKKTYLVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 D A + YSL EI I+A H G ++L K F + L E N Sbjct: 120 TDGIDADSVIGDFYSLGLGEIHPIAASHGRGVTQLIEKSLKPFIEIEEEVELTEEEENAA 179 Query: 181 NEESPKENITSEGKSSVKN-ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITR 239 + + + + + + P+++A+VGRPNVGKSTL NR+LG R++ G TR Sbjct: 180 YWAAQEAEAEFDEEDEEFDPTTLPIKLAIVGRPNVGKSTLTNRILGEERVVVFDMPGTTR 239 Query: 240 DSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPF 299 DS+ I + DTAG+RK +ITE++E+ +V K++Q++ ++++DA Sbjct: 240 DSIYIPMERDGREYVLIDTAGVRKRGKITETVEKFSVIKTLQAIEDANVVLLVIDAREGI 299 Query: 300 EKQDLRIVDSVFNTGHAVVLALNKWDMV--SDKLNLLQDLRTKAIKNLPQIGDIYINTIS 357 QDL ++ + N G ++V+A+NKWD + D+ ++ L + L + I+ IS Sbjct: 300 SDQDLSLLGFILNAGRSLVIAVNKWDGMKPEDREHVKDMLELR----LGFVDFARIHFIS 355 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 G G+ +L SV E + R+ T+ L ++ + ++ PP I R ++KY Sbjct: 356 ALHGSGVGNLFESVEEAYESATRRVGTALLTRIMKMAEEEHQPPLIRGRRVKMKYAHAGG 415 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I + +P+SYKRYL+N R + + G PIR+ F+ +NPY K Sbjct: 416 HNPPIVVIHGNQVSDLPDSYKRYLMNYFRRSLQVMGTPIRIQFKEGENPYANK 468 >gi|20808046|ref|NP_623217.1| GTP-binding protein EngA [Thermoanaerobacter tengcongensis MB4] gi|26006716|sp|Q8R9J1|DER_THETN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|20516626|gb|AAM24821.1| predicted GTPases [Thermoanaerobacter tengcongensis MB4] Length = 439 Score = 275 bits (702), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 157/453 (34%), Positives = 253/453 (55%), Gaps = 30/453 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNR++K+++++V + PG+TRDR+YG A F +VDT G+ Sbjct: 6 VAIVGRPNVGKSTLFNRILKRRISIVEDIPGVTRDRIYGNAEWLNRKFILVDTGGLDPDP 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 I ++ Q E AI A LILF++D++ G+ P D I + LRK +I+V NK+D+ Sbjct: 66 KDVIFSKVKLQVEAAIEAADLILFVVDAREGLVPEDEEIANMLRKTKKEVILVCNKVDSF 125 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + +FY+ + L E + ISA + LG EL + K + EN+ EE Sbjct: 126 KEMPASFYDFFKLGLGEPIPISASNGLGIGELLDEVIK-----------RLPENDVEYEE 174 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 + ++IAV+GRPNVGKS+L+NR+LG R++ G TRD++ Sbjct: 175 ------------------ETIKIAVIGRPNVGKSSLVNRILGEERVIVSDIPGTTRDAID 216 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + + DTAG+R+ SRI+ES+E+ +V +++ ++ + ++++DAT +QD Sbjct: 217 TPFTKDGRNYILIDTAGIRRKSRISESIERYSVLRALAAIERADICLLMIDATEGPTEQD 276 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 +I F G +++ +NKWD+V N ++ + L I I IS +TG+ Sbjct: 277 TKIAGYAFENGKGIIILVNKWDIVEKDSNTYKEYTEMIREKLAFISFAPILFISAKTGQR 336 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 + ++ +V ++ + + RITT LN+ L + L PPP+ R ++ Y TQ+ + PP+F Sbjct: 337 IHKVLETVDKVWEEYNKRITTGLLNNVLNEAMLMFPPPSSKGRPIKIYYATQVGTKPPTF 396 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 +IF P + SY R+L N +R NF G+PI Sbjct: 397 VIFVNEPELLHFSYVRFLENTIRQNFGFEGVPI 429 >gi|126175188|ref|YP_001051337.1| GTP-binding protein EngA [Shewanella baltica OS155] gi|166225854|sp|A3D6V5|DER_SHEB5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|125998393|gb|ABN62468.1| small GTP-binding protein [Shewanella baltica OS155] Length = 488 Score = 275 bits (702), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 157/471 (33%), Positives = 262/471 (55%), Gaps = 9/471 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A ++G F +VDT GI Sbjct: 1 MIPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAFLSGYEFIVVDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG I +M +Q+ AI EA ++LF+ D++AG+T D +I LR + +V+NK Sbjct: 61 -DGTEEGIETKMAEQSLAAIEEADVVLFMTDARAGLTAADLSIAQHLRSREKTTFVVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D A E +SL E+ +++A G + + + + + ++ + Sbjct: 120 VDGIDADSACAEFWSLGLGEVYQMAASQGRGVTNMIEYALTPYAE-----AMGIVRQGED 174 Query: 181 NEESPKENITSEGKSSVKNISK-PLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITR 239 +E E ++ K + P+++A++G+PNVGKSTL NR+LG R++ + G TR Sbjct: 175 EVTEEREYTEEEAEAEQKRLQDLPIKLAIIGKPNVGKSTLTNRILGEERVVVFDEPGTTR 234 Query: 240 DSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPF 299 DS+ I + I DTAG+R+ S++ + +E+ +V K++++V ++++DA Sbjct: 235 DSIYIPMEREGREYVIIDTAGVRRRSKVHQVIEKFSVIKTLKAVEDANVVLLIIDAREGI 294 Query: 300 EKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGR 359 +QDL ++ N G A+V+A+NKWD + + ++++ + L I I+ IS Sbjct: 295 AEQDLGLLGFALNAGRALVIAVNKWDGIDQGIK--DRVKSELDRRLGFIDFARIHFISAL 352 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 G G+ L S+ E R++TS L +Q +Q + PP + R +LKY + Sbjct: 353 HGTGVGHLFESIEEAYDSATRRVSTSMLTRIMQMSQDDHQPPLVNGRRVKLKYAHAGGYN 412 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 PP +I +K+P+SYKRY++N R + + G PI++ FQ NP+ K Sbjct: 413 PPIVVIHGNQVSKLPDSYKRYMMNYFRRSLKVVGTPIQLRFQEGDNPFENK 463 >gi|37222112|gb|AAP49306.1| Uvs063 [uncultured bacterium] Length = 435 Score = 274 bits (701), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 152/452 (33%), Positives = 242/452 (53%), Gaps = 28/452 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNRL++++ A+V + G+TRDR YG++ NG F+++DT G G Sbjct: 5 VAIVGRPNVGKSTLFNRLIQRREAIVDSVSGVTRDRNYGKSEWNGKEFSVIDTGGYVRGS 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + ++ Q ELAI+EA +I+F++D + GITP D + LRK P+++ NK+D Sbjct: 65 DDVFEGEIRKQVELAIDEADVIIFVVDVEEGITPMDETVAKLLRKVTKPVLLAVNKVDNA 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + +++ E Y+L + ++ GT +L + F P P E Sbjct: 125 MREKDAIEFYNLGLGDYFTFASISGSGTGDLLDALIDAF----PEKP----------EVE 170 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 KE++ R AVVGRPN GKS+ IN L+G +R + +G TRD++ Sbjct: 171 AKEDLP--------------RFAVVGRPNAGKSSFINALIGQDRYIVTDIAGTTRDAIDT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 ++ + DTAG+R+ +++ E LE +V +S++++ + I+++DAT FE QD Sbjct: 217 KFDRFGFEFNLVDTAGIRRKAKVKEDLEFYSVMRSVRAIEHADICILVIDATRGFEGQDQ 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 I VV+ +NKWD+V +D K K L D+ I +S T + L Sbjct: 277 SIFWLAEKNRKGVVILVNKWDLVEKDTMSTRDYEEKIKKELMPFTDVPILFVSALTKQRL 336 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 + + +++ + K RI TS N ++ K PPP +Y ++KY Q+ + P F+ Sbjct: 337 LKALEATVQVFENRKQRIATSKFNEYMLKVIEAYPPPATKGKYVKIKYCMQLPTQTPQFV 396 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 F P + E YKRYL N++R N+ SG+PI Sbjct: 397 FFANMPQYVKEPYKRYLENKIRENWDFSGVPI 428 >gi|296104190|ref|YP_003614336.1| GTP-binding protein EngA [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058649|gb|ADF63387.1| GTP-binding protein EngA [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 511 Score = 274 bits (701), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 164/473 (34%), Positives = 261/473 (55%), Gaps = 8/473 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A + G F +DT GI Sbjct: 21 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGI 80 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ LAI EA ++LF++D++AG+ P D AI LR + P +V+NK Sbjct: 81 -DGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADSAIAKHLRSREKPTFLVANK 139 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLG-TSELHSVIFKIFKQKYPNHPLEMIENNK 179 D A + + +SL +I I+A H G TS L +V+ + P P E+ E+ Sbjct: 140 TDGIDADQAIADFWSLGLGDIYPIAASHGRGVTSLLETVLLPWVDEVNP--PEEVDEDAA 197 Query: 180 RNEE--SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGI 237 + +E E + + P+++A+VGRPNVGKSTL NR+LG R++ G Sbjct: 198 YWAQFEEGEEGEEEEPEETFNPQDLPIKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGT 257 Query: 238 TRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATI 297 TRDS+ I + DTAG+RK +IT+ +E+ +V K++Q++ ++++DA Sbjct: 258 TRDSIYIPMERDEREYVLIDTAGVRKRGKITDVVEKFSVIKTLQAIEDANVVLLVIDARE 317 Query: 298 PFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTIS 357 QDL ++ + N+G ++V+ +NKWD +S+++ + ++ L I ++ IS Sbjct: 318 GISDQDLSLLGFILNSGRSLVIVVNKWDGLSNEVR--EQVKETLDFRLGFIDFARVHFIS 375 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 G G+ +L SV E R +T+ L + + PP + R +LKY Sbjct: 376 ALHGSGVGNLFDSVREAYDSSTRRQSTAMLTRIMNMAAEDHQPPLVRGRRVKLKYAHAGG 435 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I +P+SYKRYL+N R + + G PIR+ F+ NP+ K Sbjct: 436 YNPPIVVIHGNQVKDLPDSYKRYLMNYFRKSLDVMGTPIRIQFKEGDNPFANK 488 >gi|88607492|ref|YP_504995.1| GTP-binding protein EngA [Anaplasma phagocytophilum HZ] gi|88598555|gb|ABD44025.1| putative GTP-binding protein EngA [Anaplasma phagocytophilum HZ] Length = 440 Score = 274 bits (701), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 165/469 (35%), Positives = 265/469 (56%), Gaps = 36/469 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNRL ++K A+V + +TRDR G+ F +DT G+ADG Sbjct: 4 VAIVGLPNVGKSTLFNRLTRRKSAIVSDIAHVTRDRKEALVDFCGLRFIAIDTGGVADGG 63 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRK-KNIPIIIVSNKMDT 123 I + Q +LA+ A ++LF+ID++ + ++ +L K N PII+V+NK ++ Sbjct: 64 E--IQSLVKTQVQLALENADVVLFVIDAQRATDSHSTSLGKWLSKITNKPIILVANKCES 121 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + L F V ISAEH+LG ++L+ I + +Q E Sbjct: 122 NKNNVHVDTMEYLGFLGPVYISAEHNLGMADLYEAIAPLIEQ----------------SE 165 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 PK K+ +P+ I+++G+PNVGKST +N +LG R++T +G TRDS+S Sbjct: 166 RPK-----------KDQDRPIAISIIGQPNVGKSTFVNSILGEERVITSGIAGTTRDSIS 214 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 +++K + + DTAG+RK +++TE++E+ +V+ ++ ++ I+++D T +QD Sbjct: 215 AEYSYKGITLLLTDTAGIRKRTKVTENMEKLSVQSAIHALSKSHVVILIVDFTQGISQQD 274 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIG-DIYINTISGRTGE 362 L I + G +VLALNK D+V+DK +D AI+ ++ D+ I +S Sbjct: 275 LSIASTAIKDGKGIVLALNKADLVNDK--AAEDAILNAIRQYSRVDFDVPIMKMSALENI 332 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYN-RLKYITQIQSSPP 421 G D ++ ++I + T I+TS LN WL T + PP + N+ RLKYI+Q+ + PP Sbjct: 333 GCDKVLSKAVKIYESASTHISTSKLNKWL-GTAIDYHPPHLQNKKKVRLKYISQVSTLPP 391 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +F+I T ++ +Y+ YL N +FS+ G+PIRM F+ NPYI K Sbjct: 392 TFVI-ATNSTEVESTYQTYLKNSFLKHFSMQGVPIRMIFKKGNNPYISK 439 Score = 39.7 bits (91), Expect = 0.94, Method: Compositional matrix adjust. Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 6/92 (6%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP 264 ++A+VG PNVGKSTL NRL + + +TRD ++ DT G+ Sbjct: 3 KVAIVGLPNVGKSTLFNRLTRRKSAIVSDIAHVTRDRKEALVDFCGLRFIAIDTGGVADG 62 Query: 265 SRITESLEQKTVKKSMQ-SVRTCETTIVLLDA 295 I Q VK +Q ++ + + ++DA Sbjct: 63 GEI-----QSLVKTQVQLALENADVVLFVIDA 89 >gi|118580147|ref|YP_901397.1| GTP-binding protein EngA [Pelobacter propionicus DSM 2379] gi|171704446|sp|A1APR9|DER_PELPD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|118502857|gb|ABK99339.1| small GTP-binding protein [Pelobacter propionicus DSM 2379] Length = 448 Score = 274 bits (701), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 160/462 (34%), Positives = 243/462 (52%), Gaps = 32/462 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGV--IFNIVDTAGIAD 62 +A+VG PNVGKSTLFNRL+ + A+V + PG+TRDR Y A+IN F ++DT G Sbjct: 5 VALVGRPNVGKSTLFNRLLGHRRAIVDDTPGVTRDRNY--ALINRFEKPFILIDTGGFEP 62 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + +QM +Q+ LA+ EA +I+F++D+++G+TP D + + LR+ P++ V NK+D Sbjct: 63 VTEDRLLQQMREQSSLAMEEADVIIFMMDARSGLTPADVEVANMLRRVKKPVMYVVNKVD 122 Query: 123 TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 + + E YSL + + ISAEH+ G Y + + Sbjct: 123 GEKLENDSAEFYSLGVENLYTISAEHNRGV--------------YDLMDDLLELLPLDSG 168 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 E IT RIAVVGRPNVGKS+L+NRLLG+ R++ +G TRDSV Sbjct: 169 PESGEEIT--------------RIAVVGRPNVGKSSLVNRLLGFERVVANPTAGTTRDSV 214 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + P + DTAG+R+ + TE LE+ +V +++S+ + +V+LDAT +Q Sbjct: 215 DTLFMCNKKPYLLIDTAGIRRKGKTTEKLEKYSVVDALRSIERADVVLVVLDATQGVTEQ 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D RI V G A V LNKWD + + K + I +S TG+ Sbjct: 275 DERIAGYVHEAGRACVFVLNKWDAIEKDNSTFGLYVDKVRTGFKYLAYAPIVFVSAMTGQ 334 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 +M SV E+ + + R+TTS LN + + P R + + TQ+ + PP Sbjct: 335 RTAKVMESVDEVMEQFSRRVTTSDLNRVFSEATSSHHAPLAHGRRVKFYFATQVTTRPPC 394 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 F++F P+ I SY+RYLIN+ R F +G P+R+ F+ + Sbjct: 395 FVVFTNQPDSIHFSYERYLINQFREAFGFNGTPLRIIFRGRE 436 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/124 (33%), Positives = 64/124 (51%), Gaps = 2/124 (1%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI- 60 I IA+VG PNVGKS+L NRL+ + V G TRD + + N + ++DTAGI Sbjct: 175 ITRIAVVGRPNVGKSSLVNRLLGFERVVANPTAGTTRDSVDTLFMCNKKPYLLIDTAGIR 234 Query: 61 ADGKNCSIAKQMNDQTEL-AINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 GK ++ + L +I A ++L ++D+ G+T D I ++ + + V N Sbjct: 235 RKGKTTEKLEKYSVVDALRSIERADVVLVVLDATQGVTEQDERIAGYVHEAGRACVFVLN 294 Query: 120 KMDT 123 K D Sbjct: 295 KWDA 298 >gi|262037969|ref|ZP_06011387.1| ribosome-associated GTPase EngA [Leptotrichia goodfellowii F0264] gi|261748010|gb|EEY35431.1| ribosome-associated GTPase EngA [Leptotrichia goodfellowii F0264] Length = 439 Score = 274 bits (701), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 164/472 (34%), Positives = 260/472 (55%), Gaps = 38/472 (8%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +AIVG PNVGKSTLFN+LV ++++V + PG+TRDRLY + +G F +VDT G+ Sbjct: 1 MKQVVAIVGRPNVGKSTLFNKLVGDRLSIVKDEPGVTRDRLYRETEWSGKNFILVDTGGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + + +++ +Q ++AI+EA +++FL+D KAGIT D I + LRKK+ +++ NK Sbjct: 61 EPKTDDFMMRKIKEQAQVAIDEADVVIFLVDGKAGITGLDEDIANILRKKDKKVVVAVNK 120 Query: 121 MDTRI-AQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNK 179 +D + Q N E Y+L F+E++ IS EH + +L + F K Sbjct: 121 IDNYMREQDNILEFYALGFEEVIGISGEHKINLGDLLDAVIAKFDNK------------- 167 Query: 180 RNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITR 239 KE T EG L IA++GRPN GKS+LIN+LL R + +G TR Sbjct: 168 ------KEKQTEEG----------LCIAILGRPNAGKSSLINKLLNEERSIVSDIAGTTR 211 Query: 240 DSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPF 299 D++ + + + DTAG+R+ S+I +S+E +V ++++S++ + +++LDAT Sbjct: 212 DAIDSTLKYDGEIYTLIDTAGIRRKSKIEDSIEYYSVLRAVKSIKRVDVCVLMLDATELL 271 Query: 300 EKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGR 359 QD R+ ++ +++A+NKWD++ N ++ +LP + I T+S Sbjct: 272 TDQDKRVAGLIYEEKKPIIIAVNKWDLIEKDNNSVKHFTELVKADLPFLDYAPIITMSAL 331 Query: 360 TGEGLDDLMVSVLE----INKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQ 415 TG+ VS+LE IN+ + +ITT LN L + QNP PT R ++ Y TQ Sbjct: 332 TGK----RTVSILEQAKFINEEYHKKITTGLLNQILAEMIAQNPVPTRKGRAVKINYGTQ 387 Query: 416 IQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 + +PP F+ F P+ I SY+RY+ N+LR F G PI + F Y Sbjct: 388 VGQAPPKFVFFSNNPDLIHFSYQRYIENKLREYFGFEGCPISIVFNKKNENY 439 >gi|85860147|ref|YP_462349.1| GTP-binding protein EngA [Syntrophus aciditrophicus SB] gi|85723238|gb|ABC78181.1| GTP-binding protein [Syntrophus aciditrophicus SB] Length = 447 Score = 274 bits (700), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 160/458 (34%), Positives = 247/458 (53%), Gaps = 26/458 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNRL +K A+V + PG TRDR Y +G + ++DT G Sbjct: 7 VAIVGRPNVGKSTLFNRLSQKSKAIVIDVPGATRDRNYADCTWHGRRYTLIDTGGFEPAS 66 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I QM +QT LAI EA +I+FL+D + G+TP D I LR+ + NK+D Sbjct: 67 TETILIQMREQTHLAIEEADIIIFLMDGRDGLTPADIEIVQLLREGGKKVFYAVNKVDGP 126 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + E Y L I +ISA+H LG EL + ++ + E E ++ Sbjct: 127 RHEGLLPEFYRLGVSRIHDISAQHGLGIDELMEDLSACLPEEAASAGEEGEEEDR----- 181 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 +RIA++G+PNVGKS+L+N++LGY R + G TRD++ Sbjct: 182 -------------------IRIALIGKPNVGKSSLLNKILGYERTIANPTPGTTRDAIDT 222 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + H + DTAG+RK SRI+ SLE+ +V ++++++ C+ ++L+DA QD Sbjct: 223 PFEFDGHRYLLIDTAGIRKKSRISLSLEKYSVIQALKTLDRCDIALLLIDAEEGITDQDT 282 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIY-INTISGRTGEG 363 +I F G AV++ +NKWD+V+ K N + IK+ + D I +S +G+ Sbjct: 283 KIAGLAFEKGRAVIIVVNKWDLVA-KDNSTVGRYVRDIKDRLKFMDFSPIIFVSALSGQR 341 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 + + V E+ + + TRI+T LN + + +NPPP + + Y+TQ+ PP+F Sbjct: 342 VTRIFALVQEVYRQYTTRISTGELNRKVMEIVSKNPPPQYQQKAHPFNYVTQVSIKPPTF 401 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 F P +I SY+RYLIN LR + +PIR+ F+ Sbjct: 402 AFFVGKPAEIHFSYERYLINSLREALGFTTVPIRLVFR 439 >gi|50122138|ref|YP_051305.1| GTP-binding protein EngA [Pectobacterium atrosepticum SCRI1043] gi|81827050|sp|Q6D280|DER_ERWCT RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|49612664|emb|CAG76114.1| probable GTP-binding protein [Pectobacterium atrosepticum SCRI1043] Length = 495 Score = 274 bits (700), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 165/479 (34%), Positives = 259/479 (54%), Gaps = 16/479 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A + G F I+DT GI Sbjct: 1 MIPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGHEFIIIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M Q+ +AI EA ++LF++D++AG+ P D I LR + ++V+NK Sbjct: 61 -DGTEDGVETRMAGQSLVAIEEADIVLFMVDARAGLMPADEGIAKHLRSREKMTVLVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQK--YPNHPLEMIENN 178 D + YSL E+ I+A H G + L + F Q L E N Sbjct: 120 TDGLDPDMVTADFYSLGMGEVYAIAASHGRGVTSLLETVLLPFVQDEIEEPVELTEEEEN 179 Query: 179 KRNEESPKENITSEGKSSVKNISK---PLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQS 235 + + + + + + + P+++A+VGRPNVGKSTL NR+LG R++ Sbjct: 180 AAYWAALEAEEQASEEEAEDDFNPEDLPIKLAIVGRPNVGKSTLTNRILGEERVVVYDMP 239 Query: 236 GITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDA 295 G TRDS+ I + DTAG+RK ++TE++E+ +V K++Q++ ++++DA Sbjct: 240 GTTRDSIYIPMVRDEREYILIDTAGVRKRGKVTETVEKFSVIKTLQAIEDANVVLLVIDA 299 Query: 296 TIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVS----DKLNLLQDLRTKAIKNLPQIGDI 351 QDL ++ + N+G ++V+ +NKWD +S D++ DLR L I Sbjct: 300 REGISDQDLSLLGFILNSGRSLVIVMNKWDGLSQEVRDQVKDTLDLR------LGFIDFA 353 Query: 352 YINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLK 411 I+ IS G G+ +L SV E R++T+ L +Q + PP + R +LK Sbjct: 354 RIHFISALHGSGVGNLFESVTEAYSCATRRVSTAMLTRIMQMASDDHQPPLVRGRRVKLK 413 Query: 412 YITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 Y +PP +I +P+SYKRYL+N R + + G PIR+ F+ +NP+ +K Sbjct: 414 YAHAGGYNPPIVVIHGNQVKDLPDSYKRYLMNYYRRSLEVMGTPIRIQFKEGENPFAEK 472 >gi|153001514|ref|YP_001367195.1| GTP-binding protein EngA [Shewanella baltica OS185] gi|160876250|ref|YP_001555566.1| GTP-binding protein EngA [Shewanella baltica OS195] gi|217972557|ref|YP_002357308.1| GTP-binding protein EngA [Shewanella baltica OS223] gi|304410031|ref|ZP_07391650.1| ribosome-associated GTPase EngA [Shewanella baltica OS183] gi|307302256|ref|ZP_07582014.1| ribosome-associated GTPase EngA [Shewanella baltica BA175] gi|166225855|sp|A6WQP3|DER_SHEB8 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|189037160|sp|A9KWW9|DER_SHEB9 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|254783166|sp|B8E9T1|DER_SHEB2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|151366132|gb|ABS09132.1| small GTP-binding protein [Shewanella baltica OS185] gi|160861772|gb|ABX50306.1| small GTP-binding protein [Shewanella baltica OS195] gi|217497692|gb|ACK45885.1| small GTP-binding protein [Shewanella baltica OS223] gi|304351440|gb|EFM15839.1| ribosome-associated GTPase EngA [Shewanella baltica OS183] gi|306914294|gb|EFN44715.1| ribosome-associated GTPase EngA [Shewanella baltica BA175] gi|315268439|gb|ADT95292.1| ribosome-associated GTPase EngA [Shewanella baltica OS678] Length = 488 Score = 273 bits (699), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 156/471 (33%), Positives = 262/471 (55%), Gaps = 9/471 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A ++G F +VDT GI Sbjct: 1 MIPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAFLSGYEFIVVDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG I +M +Q+ AI EA ++LF+ D++AG+T D +I LR + +V+NK Sbjct: 61 -DGTEEGIETKMAEQSLAAIEEADVVLFMTDARAGLTAADLSIAQHLRSREKTTFVVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D A E +SL E+ +++A G + + + + + ++ + Sbjct: 120 VDGIDADSACAEFWSLGLGEVYQMAASQGRGVTNMIEYALTPYAE-----AMGIVRQGED 174 Query: 181 NEESPKENITSEGKSSVKNISK-PLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITR 239 +E E ++ K + P+++A++G+PNVGKSTL NR+LG R++ + G TR Sbjct: 175 EVTEEREYTEEEAEAEQKRLQDLPIKLAIIGKPNVGKSTLTNRILGEERVVVFDEPGTTR 234 Query: 240 DSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPF 299 DS+ I + I DTAG+R+ S++ + +E+ +V K++++V ++++DA Sbjct: 235 DSIYIPMEREGREYVIIDTAGVRRRSKVHQVIEKFSVIKTLKAVEDANVVLLIIDAREGI 294 Query: 300 EKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGR 359 +QDL ++ N G A+V+A+NKWD + + ++++ + L I I+ IS Sbjct: 295 AEQDLGLLGFALNAGRALVIAVNKWDGIDQGIK--DRVKSELDRRLGFIDFARIHFISAL 352 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 G G+ L S+ E R++TS L +Q +Q + PP + R +LKY + Sbjct: 353 HGTGVGHLFESIEEAYDSATRRVSTSMLTRIMQMSQDDHQPPLVNGRRVKLKYAHAGGYN 412 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 PP +I +++P+SYKRY++N R + + G PI++ FQ NP+ K Sbjct: 413 PPIVVIHGNQVSRLPDSYKRYMMNYFRRSLKVVGTPIQLRFQEGDNPFENK 463 >gi|238758839|ref|ZP_04620012.1| GTP-binding protein engA [Yersinia aldovae ATCC 35236] gi|238702947|gb|EEP95491.1| GTP-binding protein engA [Yersinia aldovae ATCC 35236] Length = 494 Score = 273 bits (699), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 165/478 (34%), Positives = 261/478 (54%), Gaps = 15/478 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI IA+VG PNVGKSTLFNRL + A+V + PG+TRDR YG+A + G F ++DT GI Sbjct: 1 MIPVIALVGRPNVGKSTLFNRLTHTRDALVADFPGLTRDRKYGRAEVEGHEFIVIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M Q+ LAI EA ++LF++D++AG+ P D I LR + +V+NK Sbjct: 61 -DGTEDGVETKMAGQSLLAIEEADIVLFMVDARAGLMPADQGIAQHLRSREKATFLVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL-HSVIFKIFKQKYPNHPLEMIENNK 179 D + YSL ++ I+A H G ++L V+ + P L E N Sbjct: 120 TDGIDPDTATADFYSLGLGDVHAIAASHGRGVTQLIEDVMAPYMDAEEPEVELTEEEANA 179 Query: 180 R---NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSG 236 +E+ + I + + + P+++A+VGRPNVGKSTL NR+LG +R++ G Sbjct: 180 AYWAEQEADSDEIPEDEEDDFDPRTLPIKLAIVGRPNVGKSTLTNRILGEDRVVVYDMPG 239 Query: 237 ITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDAT 296 TRDS+ I + DTAG+RK +ITE++E+ +V K++Q++ ++++DA Sbjct: 240 TTRDSIYIPMTRDEREYILIDTAGVRKRGKITETVEKFSVIKTLQAIEDSNVVLLVIDAR 299 Query: 297 IPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSD----KLNLLQDLRTKAIKNLPQIGDIY 352 QDL ++ + N+G ++V+A+NKWD +++ ++ + DLR L + Sbjct: 300 DGISDQDLSLLGFILNSGRSLVIAVNKWDGMTEEARAQVKDMLDLR------LGFVDFAR 353 Query: 353 INTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKY 412 I+ IS G G+ +L S+ E R+ TS L +Q + + PP + R +LKY Sbjct: 354 IHFISALHGSGVGNLFESIQEAYDCSTKRVGTSMLTRIMQMAEEDHQPPLVRGRRVKLKY 413 Query: 413 ITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I + +SYKRYL+N R + + G PIR+ F+ +NP+ K Sbjct: 414 AHAGGYNPPIVVIHGNQVTDLSDSYKRYLMNYFRRSLKVMGTPIRIQFKEGENPFAGK 471 >gi|300776276|ref|ZP_07086134.1| ribosome-associated GTPase EngA [Chryseobacterium gleum ATCC 35910] gi|300501786|gb|EFK32926.1| ribosome-associated GTPase EngA [Chryseobacterium gleum ATCC 35910] Length = 436 Score = 273 bits (699), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 156/458 (34%), Positives = 243/458 (53%), Gaps = 29/458 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNRL++++ A+V + G+TRDR YG++ NGV F ++DT G G Sbjct: 5 VAIVGRPNVGKSTLFNRLLERREAIVDSTAGVTRDRHYGKSDWNGVDFTVIDTGGYDVGT 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +++ Q +LA++EA I+F+++ + G+T DH I LR+ N PI IV NK+D+ Sbjct: 65 DDIFEEEIRKQVQLAVDEATSIIFMMNVEEGLTDTDHEIYRLLRRSNKPIYIVINKVDSA 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + E Y L + +S+ GT +L I + F P E + Sbjct: 125 KEELPATEFYQLGIDKYYTLSSATGSGTGDLLDDIVRDFPTTEYKDPFEGL--------- 175 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 PK I + GRPNVGKSTL N LL R + +G TRDS+ Sbjct: 176 PK-------------------ITIAGRPNVGKSTLTNALLDVERNIVTDIAGTTRDSIQT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 +N H + DTAGMR+ S++ E LE +V +S++S+ + I+++DAT +E QD+ Sbjct: 217 LYNKFGHEFVLVDTAGMRRKSKVNEDLEFYSVMRSIRSIEYSDVVIIMVDATQGWESQDM 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDK-LNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 I +V+ +NKWD++ DK N ++D + Q DI I +S T + Sbjct: 277 NIFGLAQKNRKGIVILVNKWDLIEDKQTNTMRDFEKSIKDKIGQFQDIPILFVSALTKQR 336 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 + + +++ + K +I TS LN + PPP + +Y ++KY Q+ + P F Sbjct: 337 ILKAVEVAMQVYEDRKKKIKTSKLNEVMLPIFENTPPPALKGKYIKIKYCVQLPTPSPQF 396 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 + FC P + E YKR+ N+LR F +G+PI + F+ Sbjct: 397 VFFCNLPQYVKEPYKRFTENQLRKEFGFTGVPIEVYFR 434 >gi|261493816|ref|ZP_05990330.1| putative GTP-binding protein [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261310519|gb|EEY11708.1| putative GTP-binding protein [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 511 Score = 273 bits (699), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 164/490 (33%), Positives = 258/490 (52%), Gaps = 23/490 (4%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG A I G F ++DT GI Sbjct: 1 MTPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHANIAGYDFIVIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + ++M +Q+ LAI EA ++LFL+D++AG+ P D I +LR++ ++V+NK Sbjct: 61 -DGTEEGVEEKMAEQSLLAIEEADVVLFLVDARAGLLPADVGIAQYLRQREKTTVVVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF---------KIFKQKYPNHP 171 D A + E Y L E+ +I+A G ++L + + F Q+ Sbjct: 120 TDGIDADSHCAEFYQLGLGEVEQIAAAQGRGVTQLIEQVLAPLGEQLNAEQFNQEQAGEN 179 Query: 172 LEMIENNKRNE---ESPKENITSEGKSSVKNI--------SKPLRIAVVGRPNVGKSTLI 220 + + N + +E E EN K ++IA+VGRPNVGKSTL Sbjct: 180 AKNVANEETDEWDTEFDFENEEDAALLDEALAEEAEESIEDKNIKIAIVGRPNVGKSTLT 239 Query: 221 NRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSM 280 NR+LG R++ G TRDS+ I I DTAG+RK ++ ++E+ +V K++ Sbjct: 240 NRILGEERVVVYDMPGTTRDSIYIPMERDGQQYTIIDTAGVRKRGKVNLAVEKFSVIKTL 299 Query: 281 QSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTK 340 Q+++ ++ +DA QDL ++ + N G ++V+ +NKWD +S ++ ++++ Sbjct: 300 QAIQDANVVLLTIDAREGISDQDLSLLGFILNAGRSLVIVVNKWDGLSQ--DIKDQVKSE 357 Query: 341 AIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPP 400 + L I ++ IS G G+ +L SV E + +TS L L+ + P Sbjct: 358 LDRRLDFIDFARVHFISALHGSGVGNLFDSVKEAYACATQKTSTSMLTRILRMAADEYQP 417 Query: 401 PTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCF 460 P + R +LKY +PP +I K+ +SYKRYL N R + + G PIR+ F Sbjct: 418 PLVNGRRVKLKYAHPGGYNPPIIVIHGNQVEKLADSYKRYLSNYFRKSLKIIGSPIRILF 477 Query: 461 QSSKNPYIKK 470 Q NP+ K Sbjct: 478 QEGNNPFAGK 487 >gi|227112682|ref|ZP_03826338.1| GTP-binding protein EngA [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 495 Score = 273 bits (698), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 165/479 (34%), Positives = 260/479 (54%), Gaps = 16/479 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A + G F IVDT GI Sbjct: 1 MIPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGHEFIIVDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M Q+ +AI EA ++LF++D++AG+ P D I LR + ++V+NK Sbjct: 61 -DGTEDGVETRMAGQSLVAIEEADIVLFMVDARAGLMPADEGIAKHLRSREKTTVLVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQK--YPNHPLEMIENN 178 D + YSL E+ I+A H G + L + F Q L E N Sbjct: 120 TDGLDPDMVTADFYSLGMGEVYAIAASHGRGVTSLLETVLLPFVQDEIEEPVELTEEEEN 179 Query: 179 KRNEESPKENITSEGKSSVKNISK---PLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQS 235 + + + + + + P+++A+VGRPNVGKSTL NR+LG R++ Sbjct: 180 AAYWAALEAEEQDSEEEAEDDFNPEDLPIKLAIVGRPNVGKSTLTNRILGEERVVVFDMP 239 Query: 236 GITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDA 295 G TRDS+ I + DTAG+RK ++TE++E+ +V K++Q++ ++++DA Sbjct: 240 GTTRDSIYIPMVRDEREYVLIDTAGVRKRGKVTETVEKFSVIKTLQAIEDANVVLLVIDA 299 Query: 296 TIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLP-QIGDI--- 351 QDL ++ + N+G ++V+ +NKWD +S Q++R + + L ++G I Sbjct: 300 REGISDQDLSLLGFILNSGRSLVIVVNKWDGLS------QEVREQVKETLDLRLGFIDFA 353 Query: 352 YINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLK 411 I+ IS G G+ +L SV E R++T+ L +Q + PP + R +LK Sbjct: 354 RIHFISALHGSGVGNLFESVTEAYSCATRRVSTAMLTRIMQMASDDHQPPLVRGRRVKLK 413 Query: 412 YITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 Y +PP +I +P+SYKRYL+N R + + G PIR+ F+ +NP+ K Sbjct: 414 YAHAGGYNPPIVVIHGNQVKDLPDSYKRYLMNYYRRSLEVMGTPIRIQFKEGENPFADK 472 >gi|326794518|ref|YP_004312338.1| GTP-binding protein engA [Marinomonas mediterranea MMB-1] gi|326545282|gb|ADZ90502.1| GTP-binding protein engA [Marinomonas mediterranea MMB-1] Length = 445 Score = 273 bits (698), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 157/471 (33%), Positives = 250/471 (53%), Gaps = 28/471 (5%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI IA+VG PNVGKSTLFNRL K + A+V ++PG+TRDR YG + F ++DT GI Sbjct: 1 MIPVIALVGRPNVGKSTLFNRLTKSRDALVADYPGLTRDRKYGDGKLGEHDFIVIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 G I ++M Q+ AI EA +LFL+D + G+ P D I + LR+ + P +V NK Sbjct: 61 T-GDEQGIDEKMASQSLQAIEEADAVLFLVDGRHGLNPADEMIANHLRRSSKPTYLVVNK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 D + YS+ + I+A H G L F ++ Sbjct: 120 TDGINEDIALADFYSVGLGSLYPIAAAHGKGVRSLIDTALAPFAEQ-------------- 165 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 +E + ++ SK +RI VVGRPNVGKSTL+NR+LG +R++ G TRD Sbjct: 166 ---------VAEARDQIQLESKGIRIGVVGRPNVGKSTLVNRMLGEDRVVVYDMPGTTRD 216 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 SV I + + + DTAG+R+ + E++E+ ++ K++Q+++ I ++DA Sbjct: 217 SVYIPYQRHDKEYTLIDTAGVRRRKHVKEAVEKFSIVKTLQAIQDANVVICVIDAHEDLV 276 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWD-MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGR 359 +QDL ++ V + G +V+A+NKWD M D+ ++ + + +P ++ IS Sbjct: 277 EQDLHMIGYVLDAGRGLVIAINKWDGMQKDEREHIKKEVERRLGFVPY---AKVHYISAL 333 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 G + DL ++ E ++ +T+ L L+ ++ PP + R +L+Y Q S+ Sbjct: 334 HGTAVGDLYDTIEETYDSCYSKWSTNRLTKILEDAVSEHQPPMVKGRRIKLRYAHQGGSN 393 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 PP ++ + +P SYKRYL N+ R +++G PI F+SS+NPY K Sbjct: 394 PPRIVVHGNQTDALPGSYKRYLENKFRTVLNITGTPISFEFRSSENPYAPK 444 >gi|227356207|ref|ZP_03840596.1| GTP-binding protein [Proteus mirabilis ATCC 29906] gi|227163671|gb|EEI48587.1| GTP-binding protein [Proteus mirabilis ATCC 29906] Length = 501 Score = 273 bits (698), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 164/480 (34%), Positives = 260/480 (54%), Gaps = 17/480 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI IA+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A ++G F I+DT GI Sbjct: 6 MIPVIALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAELDGEEFIIIDTGGI 65 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + M Q+ AI EA ++LFL+D++AG+ P D I LR +V+NK Sbjct: 66 -DGAEEGVETHMASQSLQAIQEADIVLFLVDARAGLMPADQGIAKHLRGVEKKTYLVANK 124 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL--HSVIFKIFKQKYPNHPLEMIENN 178 D + YSL EI I+A H G S+L +++ + K L E N Sbjct: 125 TDGIDIDTALADFYSLGLGEIFPIAASHGRGVSQLIEQALLPIVGKVVEEEKELTEEEEN 184 Query: 179 KRNEESPKENITSEGKSSVKN----ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQ 234 + + + + ++ + P+++A+VGRPNVGKSTL NR+LG R++ Sbjct: 185 AAYWAALEAEQKEQEEEEEEDDFDPTTLPVKLAIVGRPNVGKSTLTNRMLGEERVVVYDM 244 Query: 235 SGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLD 294 G TRDS+ I + DTAG+RK ++ E++E+ +V K++Q++ C ++++D Sbjct: 245 PGTTRDSIYIPMERDGKEYILIDTAGVRKRGKVKETVEKFSVIKTLQAIEDCNVALLVID 304 Query: 295 ATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVS----DKLNLLQDLRTKAIKNLPQIGD 350 A QDL ++ + N+G ++V+A+NKWD ++ +++ + DL+ L + Sbjct: 305 AREGISDQDLSLLGYILNSGRSLVIAVNKWDGMTQEDREQVKDMLDLK------LGFVDF 358 Query: 351 IYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRL 410 ++ IS G G+ +L S+ E R+ TS L ++ + + PP I R ++ Sbjct: 359 ARVHFISALHGSGVGNLFESIQEAYTCATRRVGTSMLTRIMKMAEDDHQPPLIRGRRVKM 418 Query: 411 KYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 KY +PP +I + +P+SYKRYL+N R + G PIR+ F+ +NPY K Sbjct: 419 KYAHAGGYNPPVVVIHGNQVSDLPDSYKRYLMNYFRRTLQVMGTPIRIQFKEGENPYADK 478 >gi|227328671|ref|ZP_03832695.1| GTP-binding protein EngA [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 495 Score = 273 bits (698), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 167/479 (34%), Positives = 262/479 (54%), Gaps = 16/479 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A + G F IVDT GI Sbjct: 1 MIPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGHEFIIVDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M Q+ +AI EA ++LF++D++AG+ P D I LR + ++V+NK Sbjct: 61 -DGTEDGVETRMAGQSLVAIEEADIVLFMVDARAGLMPADEGIAKHLRSREKTTVLVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNK- 179 D + YSL E+ I+A H G + L + F Q P+E+ E + Sbjct: 120 TDGLDPDMVTADFYSLGMGEVYAIAASHGRGVTSLLETVLLPFVQDETEEPVELTEEEEN 179 Query: 180 ----RNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQS 235 E+ ++ E + P+++A+VGRPNVGKSTL NR+LG R++ Sbjct: 180 AAYWAALEAEEQASEEEAEDDFNPEDLPIKLAIVGRPNVGKSTLTNRILGEERVVVFDMP 239 Query: 236 GITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDA 295 G TRDS+ I + DTAG+RK ++TE++E+ +V K++Q++ ++++DA Sbjct: 240 GTTRDSIYIPMVRDEREYVLIDTAGVRKRGKVTETVEKFSVIKTLQAIEDANVVLLVIDA 299 Query: 296 TIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLP-QIGDI--- 351 QDL ++ + N+G ++V+ +NKWD +S Q+ R + + L ++G I Sbjct: 300 REGISDQDLSLLGFILNSGRSLVIVVNKWDGMS------QEAREQVKETLDMRLGFIDFA 353 Query: 352 YINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLK 411 I+ IS G G+ +L SV E R++T+ L +Q + PP + R +LK Sbjct: 354 RIHFISALHGSGVGNLFESVTEAYSCATRRVSTAMLTRIMQMASDDHQPPLVRGRRVKLK 413 Query: 412 YITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 Y +PP +I +P+SYKRYL+N R + + G PIR+ F+ +NP+ K Sbjct: 414 YAHAGGYNPPIVVIHGNQVKDLPDSYKRYLMNYYRRSLEVMGTPIRIQFKEGENPFADK 472 >gi|73667142|ref|YP_303158.1| GTP-binding protein EngA [Ehrlichia canis str. Jake] gi|72394283|gb|AAZ68560.1| Small GTP-binding protein domain:GTP-binding domain [Ehrlichia canis str. Jake] Length = 439 Score = 273 bits (698), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 160/469 (34%), Positives = 262/469 (55%), Gaps = 43/469 (9%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKST+FNRL +K A+V N P +TRDR G A + G+ F ++DT G+ + Sbjct: 4 IAIVGLPNVGKSTIFNRLTNQKSAIVSNTPNLTRDRREGNADLCGLKFKVIDTGGVDN-- 61 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKK-NIPIIIVSNKMDT 123 ++ + Q +LAI ++ F++D+K + +LRK P+I+V+NK ++ Sbjct: 62 TIKLSALVLGQVKLAIEGCDIVFFVVDAKVEQDDKNLEFAKYLRKSTQKPVILVANKCES 121 Query: 124 RIAQRNFYEIYSL---DFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 Q+ Y + L DF V ISAEH+LG +L+ V+ + H L++++ Sbjct: 122 ---QKKCYTVDYLGHFDFIGPVYISAEHNLGLIDLYEVLLPFVGE----HDLDILK---- 170 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 S +R+++VGRPN GKST +N LLG +R++ ++G TRD Sbjct: 171 --------------------SDNIRLSIVGRPNAGKSTFVNSLLGESRMIVSPEAGTTRD 210 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ I + +K+ + DTAGMRK +++ E +E +V K++ S+ + ++++D+ E Sbjct: 211 SIDIEYQYKDQMFTLIDTAGMRKKAKVIEEIEVSSVHKTIGSINRSDIVVLVIDSVYGIE 270 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVS--DKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 +QDL I D G A+++ALNKWDM++ D+ LL+D+ N ++ I IS Sbjct: 271 QQDLYIADLAIQNGKALIVALNKWDMIARKDRSELLKDICNYNKLNF----EVPIVEISA 326 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 + ++ + + K K RI+T LN WL+ + PP + +LKYITQ++ Sbjct: 327 LKNINCNKVIDKSIGLYKYLKMRISTPMLNKWLKLAVDYHKPPLFHGKVVKLKYITQVRV 386 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 PP+F+I N I +Y++YL+ LR +FS++ IPI++ + +KNPY Sbjct: 387 MPPAFIIVVNNLNAIDLTYQQYLMRSLRKHFSINEIPIKLNLKKNKNPY 435 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 33/123 (26%), Positives = 62/123 (50%), Gaps = 5/123 (4%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 L+IA+VG PNVGKST+ NRL + + +TRD + + ++ DT G+ Sbjct: 2 LKIAIVGLPNVGKSTIFNRLTNQKSAIVSNTPNLTRDRREGNADLCGLKFKVIDTGGVDN 61 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVF-NTGHAVVLALN 322 +++ +L VK +++ C+ ++DA + + ++L + +T V+L N Sbjct: 62 TIKLS-ALVLGQVKLAIEG---CDIVFFVVDAKVEQDDKNLEFAKYLRKSTQKPVILVAN 117 Query: 323 KWD 325 K + Sbjct: 118 KCE 120 >gi|254362978|ref|ZP_04979042.1| possible GTP-binding protein [Mannheimia haemolytica PHL213] gi|153094634|gb|EDN75438.1| possible GTP-binding protein [Mannheimia haemolytica PHL213] Length = 511 Score = 273 bits (698), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 163/490 (33%), Positives = 259/490 (52%), Gaps = 23/490 (4%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG A I G F ++DT GI Sbjct: 1 MTPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHANIAGYDFIVIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + ++M +Q+ LAI EA ++LFL+D++AG+ P D I +LR++ ++V+NK Sbjct: 61 -DGTEEGVEEKMAEQSLLAIEEADVVLFLVDARAGLLPADVGIAQYLRQREKTTVVVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF---------KIFKQKYPNHP 171 D A + E Y L E+ +I+A G ++L + + F Q+ Sbjct: 120 TDGIDADSHCAEFYQLGLGEVEQIAAAQGRGVTQLIEQVLAPLGEQLNAEQFNQEQAGEN 179 Query: 172 LEMIENNKRNE---ESPKENITSEGKSSVKNI--------SKPLRIAVVGRPNVGKSTLI 220 + + N + +E E EN K ++IA+VGRPNVGKSTL Sbjct: 180 AKNVANEETDEWDTEFDFENEEDAALLDEALAEEAEESIEDKNIKIAIVGRPNVGKSTLT 239 Query: 221 NRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSM 280 NR+LG R++ G TRDS+ I I DTAG+RK ++ ++E+ +V K++ Sbjct: 240 NRILGEERVVVYDMPGTTRDSIYIPMERDGQQYTIIDTAGVRKRGKVNLAVEKFSVIKTL 299 Query: 281 QSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTK 340 Q+++ ++ ++A QDL ++ + N G ++V+ +NKWD +S ++ ++++ Sbjct: 300 QAIQDANVVLLTIEAREGISDQDLSLLGFILNAGRSLVIVVNKWDGLSQ--DIKDQVKSE 357 Query: 341 AIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPP 400 + L I ++ IS G G+ +L SV E + +TS L L+ ++ P Sbjct: 358 LDRRLDFIDFARVHFISALHGSGVGNLFDSVKEAYACATQKTSTSMLTRILRMAADEHQP 417 Query: 401 PTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCF 460 P + R +LKY +PP +I K+ +SYKRYL N R + + G PIR+ F Sbjct: 418 PLVNGRRVKLKYAHPGGYNPPIIVIHGNQVEKLADSYKRYLSNYFRKSLKIIGSPIRILF 477 Query: 461 QSSKNPYIKK 470 Q NP+ K Sbjct: 478 QEGNNPFAGK 487 >gi|119476373|ref|ZP_01616724.1| predicted GTPase [marine gamma proteobacterium HTCC2143] gi|119450237|gb|EAW31472.1| predicted GTPase [marine gamma proteobacterium HTCC2143] Length = 466 Score = 273 bits (697), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 158/467 (33%), Positives = 252/467 (53%), Gaps = 28/467 (5%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ IA+VG PNVGKSTLFNRL K + A+V N PG+TRDR YG+A + F ++DT GI Sbjct: 1 MVPVIALVGRPNVGKSTLFNRLTKTRDALVANLPGLTRDRKYGEARVGSRRFIVIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 G+ I M Q+ LA++EA + FL DS+AG+T DHA+ + LR+ + P+ ++NK Sbjct: 61 T-GEEEGIDVAMAQQSMLAVDEADAVFFLCDSRAGLTAGDHALANKLRQSDKPVYYIANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D + Y L +++ ++A H G L + L+ ++N+ Sbjct: 120 IDGVDPNVAMADFYQLGIEKLYPMTATHGKGVRNLLDDML-----------LQFPDSNQE 168 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 EE K T +IA++GRPNVGKSTL+NRLLG R++ G TRD Sbjct: 169 EEEQDKHRGT--------------KIAIIGRPNVGKSTLVNRLLGEERVIVFDHPGTTRD 214 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ I + + P + DTAG+R+ + E++E+ ++ K+++++ ++++DA Sbjct: 215 SIYIDYEREGQPYTLIDTAGVRRRKNVRETVEKFSIVKALKAIDDANVVVLVMDAAEGLV 274 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 QDL ++ + G A+V+ALNKWD + ++ ++ + + L I I+ IS Sbjct: 275 DQDLHLLGHAIDAGRALVIALNKWDGLD--IDHKTWVKRELERRLQFIDFAEIHFISALH 332 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G G+ L SV + + ++ T+ L L+ + PP I R +L+Y S+P Sbjct: 333 GTGVGHLYESVDKAYRSSMEKLQTNKLTQILEGAVFDHAPPMINGRRIKLRYAHAGGSNP 392 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 P +I K+P SY+RYL R +L G PIR+ F++ +NPY Sbjct: 393 PIIVIHGNQTAKVPASYRRYLEKVFRRELNLIGTPIRIEFKAGENPY 439 >gi|291166767|gb|EFE28813.1| ribosome-associated GTPase EngA [Filifactor alocis ATCC 35896] Length = 437 Score = 273 bits (697), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 155/461 (33%), Positives = 248/461 (53%), Gaps = 28/461 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFN+LV ++A+V + PG+TRDR+YG+A F ++DT GI + Sbjct: 5 VAIVGRPNVGKSTLFNKLVGSRVAIVEDTPGVTRDRIYGEAEWLTDYFTVIDTGGIDNDS 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + I QM Q ELA++ A +ILF+++ + G+TP D I LR+ PI++ NK+D + Sbjct: 65 DDIIPAQMRRQAELAMDTADVILFVVNGRDGVTPQDREIAEQLRRTKKPIVLAVNKVDNK 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 FY+ Y L E + ISA LG +L V+ + F Sbjct: 125 NLPDYFYDFYELGVGEPLPISASVGLGIGDLLDVVAENF--------------------- 163 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 PK++ E K +K +A+VG+PN GKS++INR+LG R++ +G TRD++ Sbjct: 164 PKDSNMEENKDVIK-------VAIVGKPNAGKSSIINRILGEERVIVSPIAGTTRDAIDT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 ++ K+ DTAG+RK S+I E++E+ +V +S +V + ++++DA I +QD Sbjct: 217 YFHVKDQEYLFIDTAGIRKKSKIDENIEKYSVIRSYAAVERADVVLIVIDANIGISEQDS 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 +I N G + V+ +NKWD+V +Q + LP + I +S TG+ Sbjct: 277 KIAGLAHNAGKSTVIVVNKWDLVEKDNKSIQTYTESIRQELPFMSYAPIIFVSTTTGQRF 336 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 ++ S+ + + + R+ T LN + + + N PP+ R ++ Y TQ+ PP+F Sbjct: 337 GKIIESINAVYQESQKRVPTGLLNDVIGEAVVMNQPPSDKGRRLKIYYATQVSVQPPTFT 396 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 IF SY+RYL N++R NF G P+ + +N Sbjct: 397 IFINDRELFHFSYQRYLENQIRENFGFEGSPVIFLKREKRN 437 >gi|312794132|ref|YP_004027055.1| ribosome-associated gtpase enga [Caldicellulosiruptor kristjanssonii 177R1B] gi|312877879|ref|ZP_07737825.1| ribosome-associated GTPase EngA [Caldicellulosiruptor lactoaceticus 6A] gi|311795342|gb|EFR11725.1| ribosome-associated GTPase EngA [Caldicellulosiruptor lactoaceticus 6A] gi|312181272|gb|ADQ41442.1| ribosome-associated GTPase EngA [Caldicellulosiruptor kristjanssonii 177R1B] Length = 440 Score = 273 bits (697), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 147/453 (32%), Positives = 243/453 (53%), Gaps = 28/453 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AIVG PNVGKSTLFNRL+ ++ A+V + PGITRDR+ G+ G+ FN++DT GI Sbjct: 4 TVAIVGRPNVGKSTLFNRLIGERRAIVDDTPGITRDRIIGETEWRGITFNVIDTGGIEPY 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 I KQM Q + AI+ + +I+F++D K G+T D + + LR PI++ NK+D Sbjct: 64 SEDIILKQMRRQAQFAIDMSDVIIFMVDGKTGLTDADREVANMLRTSKKPIVLAVNKIDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 Q YE Y L + + +SAEH G ++ + F Sbjct: 124 ISQQAMIYEFYELGLSDPIAMSAEHGTGVGDVLDAVVNYFD------------------- 164 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 KE I +S++K +A++G+PN GKS+L+N +LG R++ G TRD++ Sbjct: 165 --KEGINEIEESTIK-------VAIIGKPNTGKSSLVNYILGEERVIVSDIPGTTRDAID 215 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 ++ ++ PI + DTAG+R+ S+I +++E+ ++ +++Q++ + I+LLD T +QD Sbjct: 216 STFEFEGIPITLIDTAGLRRKSKIYDNVERYSMLRTLQAIERSDICIILLDGTEDVSEQD 275 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 ++ + G ++A+NKWD V + + + + L + + IS +TG Sbjct: 276 AKVAGYAYEAGKGCIVAVNKWDAVEKDEKTADEYKKQIEEKLSFLKFAPVLFISAKTGFR 335 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 + L+ +VL + + RITT LN L + PP+ + ++ Y+TQ+ PP Sbjct: 336 VKKLLETVLYVYGNYTRRITTGQLNDVLAEATTIYQPPSDKGKQLKIYYMTQVGEKPPKI 395 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 IF + SY+RY+ N LR F +G+PI Sbjct: 396 AIFVNSKDLFHFSYQRYIENYLRKTFDFTGVPI 428 >gi|92114975|ref|YP_574903.1| small GTP-binding protein protein [Chromohalobacter salexigens DSM 3043] gi|123387342|sp|Q1QTK4|DER_CHRSD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|91798065|gb|ABE60204.1| Small GTP-binding protein protein [Chromohalobacter salexigens DSM 3043] Length = 467 Score = 273 bits (697), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 154/464 (33%), Positives = 247/464 (53%), Gaps = 30/464 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG ++ + ++DT GI+ G Sbjct: 5 IALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGNGVLGDKTYTVIDTGGIS-GN 63 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + M +Q+ LAI+EA ++LF++D + G+ D AI + LR +V NK D Sbjct: 64 EEGLDAAMAEQSLLAIDEADIVLFMVDGRTGLNVADEAIANHLRVNQKKTWLVVNKTDGL 123 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 E + L + I+A H + L + F + Sbjct: 124 EEHSAMAEFWRLGLGDPRPIAAAHGRNVTSLIDEVLAPFPPR------------------ 165 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 E ++ ++S +RI V+GRPNVGKSTL+NRLLG +R++ ++G TRD++ I Sbjct: 166 -------EANAAPPDLSNGIRIGVIGRPNVGKSTLVNRLLGEDRVVVYDEAGTTRDAIEI 218 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + P + DTAG+R+ ++E+ E+ ++ K++++++ C I++LDA +QDL Sbjct: 219 PFERRGKPYVLVDTAGVRRRKNVSEAAEKFSIIKTLEAIKACNVAIMVLDARSGLVEQDL 278 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGD-IYINTISGRTGEG 363 ++D V ++G A+VLA+NKWD + + +D AIK D ++ IS G Sbjct: 279 HLLDYVLSSGRALVLAVNKWDGLEQE---AKDKMRAAIKRRLGFADYAEMHFISALHGTA 335 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 + DL S+ + +T+ L + LQ ++ PP I R +L+ Q S+PP Sbjct: 336 VGDLYPSITRAFDSANSHWSTNRLTTILQDAVSEHQPPLIHGRRIKLRMAHQGGSNPPII 395 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 ++ +PE+YKRYL N R + G P+R F+S KNPY Sbjct: 396 VVHGNQTGSLPEAYKRYLTNTFRKVLKVRGTPLRFEFRSGKNPY 439 >gi|332880020|ref|ZP_08447704.1| ribosome biogenesis GTPase Der [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332682016|gb|EGJ54929.1| ribosome biogenesis GTPase Der [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 434 Score = 273 bits (697), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 150/461 (32%), Positives = 247/461 (53%), Gaps = 29/461 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +AIVG PNVGKST FNRL+K++ A+V G+TRDR YG+ NGV F+++DT G Sbjct: 1 MSAIVAIVGRPNVGKSTFFNRLIKRREAIVDAVSGVTRDRHYGKTDWNGVEFSVIDTGGY 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 G + + K+++ Q LAI+EA I+F+++ + G+T D ++ + LRK P+ +V NK Sbjct: 61 LAGGDDTFQKEIDKQVNLAIDEADAIIFMVNVEDGLTGMDESVAALLRKSKKPVFVVVNK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D+ + + +E Y+L F+ + IS+ + GT +L E+++N Sbjct: 121 VDSNNRRDDAHEFYALGFEHLFSISSINGSGTGDLLD---------------ELVKNLPE 165 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 E+ +EN+ R AVVGRPN GKS+ IN L+G +R + +G TRD Sbjct: 166 KEQKEEENLP--------------RFAVVGRPNAGKSSFINALIGEDRYIVTDIAGTTRD 211 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 ++ +N + DTAG+R+ S++ E LE +V +S++++ + I++LDAT FE Sbjct: 212 AIDTRYNRFGFEFNLVDTAGIRRKSKVKEDLEFYSVMRSIRAIEHSDVCILMLDATRGFE 271 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 QD I +V+ +NKWD+V + N + K + D+ I +S Sbjct: 272 SQDANIFWLAQRNRKGIVILVNKWDLVEKENNTAKAYEAAIRKEIEPFTDVPIIFVSALN 331 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 + + + + +E+ RI T LN + PPP I +Y ++K+ TQ+ + Sbjct: 332 KQRIYKAIETAVEVYNNRTKRIPTRQLNEVMLPIIENYPPPAIKGKYVKIKFCTQLPTPM 391 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 P F F P + + Y+R++ N+LR NF G+PI + F+ Sbjct: 392 PQFAFFANLPQYVKDPYRRFIENKLRENFDFKGVPIDVYFR 432 >gi|197285696|ref|YP_002151568.1| GTP-binding protein EngA [Proteus mirabilis HI4320] gi|238693198|sp|B4EZS9|DER_PROMH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|194683183|emb|CAR43820.1| GTP-binding protein [Proteus mirabilis HI4320] Length = 496 Score = 273 bits (697), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 164/480 (34%), Positives = 260/480 (54%), Gaps = 17/480 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI IA+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A ++G F I+DT GI Sbjct: 1 MIPVIALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAELDGEEFIIIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + M Q+ AI EA ++LFL+D++AG+ P D I LR +V+NK Sbjct: 61 -DGAEEGVETHMASQSLQAIQEADIVLFLVDARAGLMPADQGIAKHLRGVEKKTYLVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL--HSVIFKIFKQKYPNHPLEMIENN 178 D + YSL EI I+A H G S+L +++ + K L E N Sbjct: 120 TDGIDIDTALADFYSLGLGEIFPIAASHGRGVSQLIEQALLPIVGKFVEEEKELTEEEEN 179 Query: 179 KRNEESPKENITSEGKSSVKN----ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQ 234 + + + + ++ + P+++A+VGRPNVGKSTL NR+LG R++ Sbjct: 180 AAYWAALEAEQKEQEEEEEEDDFDPTTLPVKLAIVGRPNVGKSTLTNRMLGEERVVVYDM 239 Query: 235 SGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLD 294 G TRDS+ I + DTAG+RK ++ E++E+ +V K++Q++ C ++++D Sbjct: 240 PGTTRDSIYIPMERDGKEYILIDTAGVRKRGKVKETVEKFSVIKTLQAIEDCNVALLVID 299 Query: 295 ATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVS----DKLNLLQDLRTKAIKNLPQIGD 350 A QDL ++ + N+G ++V+A+NKWD ++ +++ + DL+ L + Sbjct: 300 AREGISDQDLSLLGYILNSGRSLVIAVNKWDGMTQEDREQVKDMLDLK------LGFVDF 353 Query: 351 IYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRL 410 ++ IS G G+ +L S+ E R+ TS L ++ + + PP I R ++ Sbjct: 354 ARVHFISALHGSGVGNLFESIQEAYTCATRRVGTSMLTRIMKMAEDDHQPPLIRGRRVKM 413 Query: 411 KYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 KY +PP +I + +P+SYKRYL+N R + G PIR+ F+ +NPY K Sbjct: 414 KYAHAGGYNPPVVVIHGNQVSDLPDSYKRYLMNYFRRTLQVMGTPIRIQFKEGENPYADK 473 >gi|218889917|ref|YP_002438781.1| GTP-binding protein EngA [Pseudomonas aeruginosa LESB58] gi|226741143|sp|B7UWJ2|DER_PSEA8 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|218770140|emb|CAW25902.1| putative GTP-binding protein EngA [Pseudomonas aeruginosa LESB58] Length = 493 Score = 273 bits (697), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 166/473 (35%), Positives = 259/473 (54%), Gaps = 14/473 (2%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ IA+VG PNVGKSTLFNRL K + A+V + G+TRDR YG+A G + ++DT GI Sbjct: 1 MVPVIALVGRPNVGKSTLFNRLTKSRDAIVAEYAGLTRDRQYGEARWQGRTYIVIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + G I +M +Q+ AI EA +LFL+DS+AG+T D I LRK+N +++NK Sbjct: 61 S-GDEEGIDAKMAEQSLQAIEEADAVLFLVDSRAGMTAADQMIAEHLRKRNKRSFLIANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +DT E L + + I+A H G + + IF P + +E Sbjct: 120 VDTIDPDLARAEFSPLGLGDALPIAAAHGRGINHMLQEALGIF-------PKDNVEEEGE 172 Query: 181 NEESPKENITSEGKSSVKNISKP--LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 E + +E E + + S+ ++IA++GRPNVGKSTL+NR+LG R++ Q+G T Sbjct: 173 GEPASEEVAEGEEPTRIPGPSEKDGIKIAIIGRPNVGKSTLVNRMLGEERVIVYDQAGTT 232 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RDS+ I + + DTAG+R+ +I E++E+ +V K++Q+++ I ++DA Sbjct: 233 RDSIYIPFERNEEKYTLIDTAGVRRRGKIFEAVEKFSVVKTLQAIQDANVVIFVMDAREG 292 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWD-MVSDKLNLLQDLRTKAIKNLPQIGDIYINTIS 357 + DL ++ V TG A+V+ALNKWD M + + + ++T+ + L + I+ IS Sbjct: 293 VVEHDLNLLGFVLETGRALVIALNKWDGMEAAERDY---VKTELERRLLFVDFADIHFIS 349 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 G G+ L SV E + TR TS L S L+ + PP + R +L+Y Sbjct: 350 ALHGTGVGHLYKSVQESFRSAVTRWPTSRLTSILEDAVQVHQPPMVNGRRIKLRYAHLGG 409 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 ++PP +I + +P++Y RYL R L G PIR+ ++ +NPY K Sbjct: 410 ANPPLIVIHGNQVDAVPKAYTRYLEKTYRRVLKLVGTPIRIEYKGGENPYEGK 462 >gi|126663301|ref|ZP_01734299.1| GTP-binding protein EngA [Flavobacteria bacterium BAL38] gi|126624959|gb|EAZ95649.1| GTP-binding protein EngA [Flavobacteria bacterium BAL38] Length = 436 Score = 273 bits (697), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 153/458 (33%), Positives = 245/458 (53%), Gaps = 29/458 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST FNRL++++ A+V + G+TRDR YG++ NG F+++DT G G Sbjct: 5 VAIVGRPNVGKSTFFNRLIQRREAIVDSVSGVTRDRNYGKSEWNGKEFSVIDTGGYIKGS 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + ++ Q ELAI+EA I+F++D + GITP D + LRK P+++V NK+D Sbjct: 65 DDIFEAEIRKQVELAIDEADAIIFVVDVEEGITPMDDEVAKLLRKVKKPVLLVINKVDNA 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + +++ E Y+L E IS GT EL + ++ P P Sbjct: 125 MREKDAVEFYNLGLGEYFTISGMSGSGTGELLDKLVEVL----PEMP------------- 167 Query: 185 PKENITSEGKSSVKNISKPL-RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 +T E +PL R VVGRPN GKS+ IN L+G +R + +G TRD++ Sbjct: 168 ---EVTEE--------VEPLPRFCVVGRPNAGKSSFINALIGEDRFVVTDIAGTTRDAID 216 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 +N + DTAG+R+ +++ E LE +V +S++++ + ++++DAT FE QD Sbjct: 217 TRYNRFGFEFNLVDTAGIRRKAKVKEDLEFYSVMRSVRAIEHSDVCLLVIDATRGFEGQD 276 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 I VV+ +NKWD+V +D K + L D+ I IS T + Sbjct: 277 QSIFWLAEKNRKGVVILVNKWDLVEKDTMTTRDYERKIREELQPFTDVPILFISALTKQR 336 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 L + + +E+ + K RI+TS N + PPP + +Y ++KY Q+ + P F Sbjct: 337 LLKALETAVEVFENRKQRISTSKFNELMLPIIEATPPPALKGKYVKIKYCMQLPTPTPQF 396 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 + F P + + YKR++ N+LR ++ SG+PI + F+ Sbjct: 397 VFFANLPQYVKDPYKRFIENKLREQYNFSGVPIDIYFR 434 >gi|303252646|ref|ZP_07338809.1| GTP-binding protein EngA [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307247405|ref|ZP_07529452.1| GTP-binding protein engA [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|302648614|gb|EFL78807.1| GTP-binding protein EngA [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306856102|gb|EFM88258.1| GTP-binding protein engA [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 506 Score = 272 bits (696), Expect = 7e-71, Method: Compositional matrix adjust. Identities = 163/485 (33%), Positives = 263/485 (54%), Gaps = 18/485 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG A I G F ++DT GI Sbjct: 1 MTPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHANIAGYDFIVIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + ++M +Q+ LAI EA ++LFL+D++AG+ P D I +LR++ ++V+NK Sbjct: 61 -DGTEEGVEEKMAEQSLLAIEEADVVLFLVDARAGLVPADIGIAQYLRQREKTTVVVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL-HSVIFKIFKQKYPNHPLEMIE--- 176 D A + E Y L E+ +I+A G ++L V+ + +Q + +E E Sbjct: 120 TDGIDADSHCAEFYQLGLGEVEQIAAAQGRGVTQLIEQVLAPLGEQLNADQAVENEENSA 179 Query: 177 -----------NNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLG 225 N + +++ + E ++ K ++IA+VGRPNVGKSTL NR+LG Sbjct: 180 NEEADEWDTDFNFENEDDTALLDEALEEETEESIEDKNIKIAIVGRPNVGKSTLTNRILG 239 Query: 226 YNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRT 285 R++ G TRDS+ I I DTAG+RK ++ ++E+ +V K++Q+++ Sbjct: 240 EERVVVYDMPGTTRDSIYIPMERDGQQYTIIDTAGVRKRGKVNLAVEKFSVIKTLQAIQD 299 Query: 286 CETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNL 345 ++ +DA QDL ++ + N G ++V+ +NKWD +S ++ ++++ + L Sbjct: 300 ANVVLLTIDAREGISDQDLSLLGFILNAGRSLVIVVNKWDGLSQ--DIKDQVKSELDRRL 357 Query: 346 PQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFN 405 I ++ IS G G+ +L SV E + +TS L L+ ++ PP + Sbjct: 358 DFIDFARVHFISALHGSGVGNLFDSVKEAYACATQKTSTSVLTRILRMAADEHQPPLVNG 417 Query: 406 RYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 R +LKY +PP +I K+ +SYKRYL N R + + G PIR+ FQ N Sbjct: 418 RRVKLKYAHPGGYNPPIIVIHGNQVEKLADSYKRYLSNYFRKSLKIIGSPIRIQFQEGNN 477 Query: 466 PYIKK 470 P+ K Sbjct: 478 PFAGK 482 >gi|114566850|ref|YP_754004.1| hypothetical protein Swol_1325 [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337785|gb|ABI68633.1| conserved hypothetical protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 441 Score = 272 bits (696), Expect = 7e-71, Method: Compositional matrix adjust. Identities = 158/468 (33%), Positives = 252/468 (53%), Gaps = 44/468 (9%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 +AIVG PNVGKSTLFNRL + A+V + PG+TRDRLY + NG F I+DT GI Sbjct: 4 VVAIVGRPNVGKSTLFNRLAGARKAIVEDIPGVTRDRLYDSSDWNGREFIIIDTGGIRFN 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + A+++ Q ELAI EA +I+ ++DS+ GIT D + + LRK N P+++ +NK++ Sbjct: 64 EGDIFAREIKLQAELAIEEADVIVLVLDSREGITAEDEQVANLLRKSNKPVVLAANKVEE 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 Q ++YE Y L + + +SA H T+EL + FK Sbjct: 124 FKKQLDYYEFYKLGLGDPIPVSAMHGYNTNELLDAVISHFK------------------- 164 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 P EG + ++IA+VGRPNVGKS+L+N LLG R++ G TRD++ Sbjct: 165 -PALEYEEEGDA--------IKIAIVGRPNVGKSSLVNALLGEERVIVSDVPGTTRDAID 215 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + +K + DTAGMR+ SRI E+ E+ +V ++++++ + +++LDAT +QD Sbjct: 216 TPFQFKGQNYLLIDTAGMRRKSRIKETTERYSVIRTLKAIERADVVLIMLDATEGVAEQD 275 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLL----QDLRTKAIKNLPQIGDIYINTISGR 359 +I V A ++ +NKWD+V + +D+R + +K L +Y++ ++ + Sbjct: 276 KKIAGYVHEQSRANIIVVNKWDLVEKDGQTMNRFDKDIREE-LKFLSYSPIMYVSALTKK 334 Query: 360 TGEGLDDLMVSVLEI----NKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQ 415 + VLEI + R+ T+ LN + + + NP P + ++ Y TQ Sbjct: 335 R-------IFQVLEIVNFVAEQHHRRVNTAELNQVINEAMMLNPLPGGGGKRIKILYSTQ 387 Query: 416 IQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSS 463 ++ +PP+F+ F P + SY RYL N LR NF G PIR+ + + Sbjct: 388 VRVAPPTFVFFSNKPEMVHFSYLRYLENALRKNFGFEGTPIRLLLRQN 435 >gi|268593180|ref|ZP_06127401.1| ribosome-associated GTPase EngA [Providencia rettgeri DSM 1131] gi|291311226|gb|EFE51679.1| ribosome-associated GTPase EngA [Providencia rettgeri DSM 1131] Length = 492 Score = 272 bits (696), Expect = 8e-71, Method: Compositional matrix adjust. Identities = 162/475 (34%), Positives = 255/475 (53%), Gaps = 10/475 (2%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A + G F I+DT GI Sbjct: 1 MIPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGHEFIIIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + M Q+ AI EA ++LF++D++AG+ P D I LR + +V+NK Sbjct: 61 -DGTEEGVETHMAAQSLQAIEEADIVLFMVDARAGLMPADEGIAKHLRSRKKKTYLVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 D + YSL EI I+A H G ++L K F + E Sbjct: 120 TDGIDVTTAIGDFYSLGLGEIHPIAASHGRGVTQLIEQSLKPFVAENEEEVELTEEEENA 179 Query: 181 N---EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGI 237 E + + + + + P+++A+VGRPNVGKSTL NR+LG R++ G Sbjct: 180 AYWAELEAQGELDEDEEDDFDPTTLPIKLAIVGRPNVGKSTLTNRILGEERVVVFDMPGT 239 Query: 238 TRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATI 297 TRDS+ I + DTAG+RK ++TE++E+ +V K++Q++ ++++DA Sbjct: 240 TRDSIYIPMERDEREYILIDTAGVRKRGKVTETVEKFSVIKTLQAIEDANVVLLVIDARE 299 Query: 298 PFEKQDLRIVDSVFNTGHAVVLALNKWDMV--SDKLNLLQDLRTKAIKNLPQIGDIYINT 355 QDL ++ + N G ++V+A+NKWD + D+ ++ L + L + I+ Sbjct: 300 GISDQDLSLLGFILNAGRSLVIAVNKWDGMKPEDREHVKDMLELR----LGFVDFARIHF 355 Query: 356 ISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQ 415 IS G G+ +L SV E + R+ T+ L ++ + ++ PP I R ++KY Sbjct: 356 ISALHGSGVGNLFESVQEAYESATRRVGTALLTRIMKMAEDEHQPPLIRGRRVKMKYAHA 415 Query: 416 IQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I + +P+SYKRYL+N R + + G PIR+ F+ +NPY K Sbjct: 416 GGHNPPIVVIHGNQVSDLPDSYKRYLMNYFRRSLQVMGTPIRILFKEGENPYADK 470 >gi|119505385|ref|ZP_01627459.1| predicted GTPase [marine gamma proteobacterium HTCC2080] gi|119458840|gb|EAW39941.1| predicted GTPase [marine gamma proteobacterium HTCC2080] Length = 472 Score = 272 bits (696), Expect = 8e-71, Method: Compositional matrix adjust. Identities = 159/474 (33%), Positives = 258/474 (54%), Gaps = 38/474 (8%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ IA+VG PNVGKSTLFN+L + + A+V N G+TRDR YG+ I F ++DT GI Sbjct: 1 MLPVIALVGRPNVGKSTLFNQLTRSRDALVANLSGLTRDRKYGEGKIGDAPFIVIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + G+ I M DQ+ +AI+EA ++L L+D +AG+ P D ++ S+LR+++ P +V NK Sbjct: 61 S-GEELGIDAAMADQSRVAIDEADIVLLLVDGRAGLHPGDESLVSYLRQRSKPFHLVVNK 119 Query: 121 MD---TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 +D IA +FY L ++ I+A H+ G +L + + Q P L Sbjct: 120 IDGVGEDIAASDFYR---LGCSQLHTIAASHNRGVLQLITSVIDALPQAAPADAL----- 171 Query: 178 NKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGI 237 N+ S +R+AVVGRPNVGKSTL+NRLLG +R++ + G Sbjct: 172 ---NDPS-------------------IRVAVVGRPNVGKSTLVNRLLGEDRVVVFDKPGT 209 Query: 238 TRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATI 297 TRDSV I + + + DTAG+R+ + E +E+ ++ K+++++ I+L+DA Sbjct: 210 TRDSVYIRYERHDQAYTLIDTAGVRRRKNVREVVEKFSIVKTLKAINEAHVVILLMDAHE 269 Query: 298 PFEKQDLRIVDSVFNTGHAVVLALNKWD-MVSDKLNLLQDLRTKAIKNLPQIGDIYINTI 356 +QDL ++ + G +V+A+NKWD + SD+ + +R++ + L + ++ I Sbjct: 270 GLVEQDLHLLGQCIDAGRGLVVAINKWDGIASDERDW---IRSELNRRLQFVDYADVHFI 326 Query: 357 SGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQI 416 S G G+ L S+ + ++ T + T+ L L+ +PPP + R +L+Y Sbjct: 327 SALHGTGVGHLYESIHQAHRAATTSLNTNKLTRILEDAVATHPPPLVNGRRVKLRYAHAG 386 Query: 417 QSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I + + +P SY RYL R L G PIR+ +++ NPY K Sbjct: 387 GQNPPIVVIHGSQTDALPASYARYLEKTFRRVLELHGTPIRIQYRTGDNPYAGK 440 >gi|220917392|ref|YP_002492696.1| small GTP-binding protein [Anaeromyxobacter dehalogenans 2CP-1] gi|219955246|gb|ACL65630.1| small GTP-binding protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 465 Score = 272 bits (696), Expect = 9e-71, Method: Compositional matrix adjust. Identities = 151/464 (32%), Positives = 247/464 (53%), Gaps = 18/464 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTLFNRL +++A+V + PG+TRDR Y I G ++VDT G Sbjct: 8 VALVGRPNVGKSTLFNRLAGRRVAIVEDVPGVTRDRNYADVIWEGRAVSVVDTGGFEPES 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + Q+ +Q +LA++EA ++ ++D + G+T D + LR+ P+ + NK+DT Sbjct: 68 RDRLMSQVREQAQLAVDEASAVVLVVDGRDGLTALDRNVADLLRRAGKPLFVAVNKVDTA 127 Query: 125 IAQRN--FYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 + + E Y L F E+ +SAEH G S L I + + Sbjct: 128 RTEEDVPLAEFYGLGFGEVHAVSAEHGRGVSGLVDAIVEKLALP-------PLPPAPEEA 180 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 + P+E SE + V +I R+A+VGRPNVGKST +N LLG R + G TRD++ Sbjct: 181 DEPQE--VSEAERPVGDI----RLAIVGRPNVGKSTFVNALLGEERFVVSDVPGTTRDAI 234 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 K + DTAG+R+ I + +E +V ++M+++ E LLDAT +Q Sbjct: 235 DSLVAHKGRRFVVTDTAGIRRKRSIAQKVESFSVVRAMKAMDQAEVVACLLDATEAGVEQ 294 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQD-LRTKAIKNLPQIGDIYINTISGRTG 361 D R++ V G A+V+ +NKWD ++++ QD R + K LP +G + +S + Sbjct: 295 DARLLGLVAEKGKALVIVVNKWD-IAEREGATQDWYRKELTKRLPFVGFAPMLFVSAKER 353 Query: 362 EGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 G+ ++ + + ++ R T LN L+ Q ++P P R +L Y+ Q+ +PP Sbjct: 354 RGVHRVLEKAARLVEQYRARFPTPQLNELLEALQDEHPAPIARGRRVKLYYVAQVAYAPP 413 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 +F+I P+ + + Y+RY+ NR R F L +P+R+ F+ ++ Sbjct: 414 TFVIQANHPDGLTDHYRRYIENRFRAAFGLE-VPMRLVFKERQH 456 >gi|238897953|ref|YP_002923633.1| putative GTP-binding protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|259645880|sp|C4K4J2|DER_HAMD5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|229465711|gb|ACQ67485.1| putative GTP-binding protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 496 Score = 272 bits (695), Expect = 9e-71, Method: Compositional matrix adjust. Identities = 169/481 (35%), Positives = 258/481 (53%), Gaps = 18/481 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI IA++G PNVGKST FNRL + A+V + PG+TRDR YG A I F I+DT GI Sbjct: 1 MIPIIALIGRPNVGKSTFFNRLTQTANALVADFPGLTRDRQYGHAEIENHKFIIIDTGGI 60 Query: 61 ADGKNC-SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 + +I K M Q+ LAI EA ++LF++D++AG+ P D I LRK+ +V+N Sbjct: 61 NGIEGIENIQKHMTHQSFLAIEEADVVLFILDARAGLLPADLEIAKHLRKRKKATFLVAN 120 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN- 178 K+D + + YSL ++ I+A H G ++L S + F + P L E N Sbjct: 121 KIDGMNSDTALTDFYSLALGKVYGIAASHGRGVAQLMSSVITPFVPEKPIIELSEEELNS 180 Query: 179 ----KRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQ 234 K+ E K + K S P+++A+VGRPNVGKSTL+N +L +R+L Sbjct: 181 SYWEKQKTEVDKTDFLESKKFLCNPESLPIKLAIVGRPNVGKSTLVNHILAQDRMLVYDI 240 Query: 235 SGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLD 294 G TRDS+ I N DTAG+RK ++I E +E+ +V K+++++ ++++D Sbjct: 241 PGTTRDSIYIPLIRNNREYIFIDTAGVRKSAKIKEKVERFSVIKTLKAIENANVVLLVID 300 Query: 295 ATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKN-----LPQIG 349 A QDL ++ + N+G ++V+ +NKWD +S + + K IKN L + Sbjct: 301 ANEGVSDQDLSLLSFILNSGRSLVITVNKWDAISSE-------KRKQIKNSLDLRLGFMD 353 Query: 350 DIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNR 409 + IS G G+++L S+ E RI TS L +Q + ++ PP + R + Sbjct: 354 FARTHFISALHGSGVENLFKSIKEAYDCSTKRINTSLLTRIMQLAKEEHEPPLVRGRRVK 413 Query: 410 LKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIK 469 LKY +P +I I +SYKRYL+N R + + G PIR+ F+ S+NP+ Sbjct: 414 LKYAHSGGYNPLIVVIHGNQVTAINDSYKRYLMNYFRRSLKIIGAPIRIQFKESENPFAS 473 Query: 470 K 470 K Sbjct: 474 K 474 >gi|187778884|ref|ZP_02995357.1| hypothetical protein CLOSPO_02479 [Clostridium sporogenes ATCC 15579] gi|187772509|gb|EDU36311.1| hypothetical protein CLOSPO_02479 [Clostridium sporogenes ATCC 15579] Length = 439 Score = 272 bits (695), Expect = 9e-71, Method: Compositional matrix adjust. Identities = 153/460 (33%), Positives = 245/460 (53%), Gaps = 28/460 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFN+L K++A+V + PG+TRDR+Y +A F ++DT GI Sbjct: 6 VAIVGRPNVGKSTLFNKLAGKRIAIVQDTPGVTRDRIYAEAEWLNYKFTMIDTGGIEPES 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I QM Q ++AI A++I+FL+D K G+ P D + LRK P+++V NK+D Sbjct: 66 EDIIISQMRRQAQIAIEMANVIIFLVDGKEGLAPADEEVAQMLRKSKKPVVLVVNKIDKL 125 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + N YE Y+L + V IS+ LG ++ + + FK ++ EE Sbjct: 126 KDEDNAYEFYNLGIGDPVTISSSQALGLGDMLDRVVEHFK-----------DDKSDGEED 174 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 + NI A VG+PNVGKS+LIN+LLG RL+ + G TRDS+ Sbjct: 175 ERINI-----------------AFVGKPNVGKSSLINKLLGEERLIVSNIPGTTRDSIDS 217 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 N + DTAG+R+ S++ E +E+ +V ++ S+ + I+++DAT +QD Sbjct: 218 YVNTDFGEFTLIDTAGLRRKSKVKEEIERYSVIRTYASIERADVCILMIDATEGISEQDQ 277 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 +I+ + A+++ +NKWD+V + + + NL + IS +TG+ + Sbjct: 278 KIIGYAHDLNKAILVIVNKWDLVEKDDKTMDKFKKELKVNLSFMAYAKYLFISAKTGQRV 337 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 ++ + E + R+ T LN + + + PP + + ++ Y+TQI + PP+F+ Sbjct: 338 VKVLQTAKECYDNYTKRVKTGVLNDVISQAIMMKEPPIVGTKRLKIYYVTQIGTKPPTFV 397 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 F P I SY+RYL N+LR NF G I++ F+ K Sbjct: 398 FFVNDPACIHFSYQRYLENQLRENFDFQGTGIKLEFRERK 437 >gi|332530165|ref|ZP_08406113.1| GTP-binding protein Der [Hylemonella gracilis ATCC 19624] gi|332040357|gb|EGI76735.1| GTP-binding protein Der [Hylemonella gracilis ATCC 19624] Length = 444 Score = 272 bits (695), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 153/467 (32%), Positives = 249/467 (53%), Gaps = 29/467 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTLFNRL + + A+V ++ G+TRDR YG F ++DT G Sbjct: 5 LALVGRPNVGKSTLFNRLTQTRDAIVADYAGLTRDRHYGNGRQGRREFIVIDTGGFEPTA 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I K+M +QT A+ EA ++F++D++AG++ DH I ++LRK P ++ +NK + Sbjct: 65 ETGIYKEMANQTRQAVAEADAVIFVVDARAGLSAQDHDIANYLRKLGKPCVLTANKAEGM 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 E Y L E++ +SA H G L +++ + + PL + + ++ + Sbjct: 125 QEGAQLAEFYELGLGEVLPVSAAHGQG---LRTLVDQALE------PLNLPQEDEEDAVE 175 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P +R AV GRPNVGKSTLIN LG RL+ G TRD++ + Sbjct: 176 P----------------GVIRFAVAGRPNVGKSTLINTWLGEERLIAFDMPGTTRDAIRV 219 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + E+ DTAG+R+ R+ E++E+ +V K++Q++ + ++LLDAT QD Sbjct: 220 PFERQGQKFELIDTAGLRRKGRVFEAVEKFSVVKTLQAIESANVVLLLLDATQGVTDQDA 279 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 I + +G AVVLA+NKWD V D + + + ++++ IS R +GL Sbjct: 280 HIAGYILESGRAVVLAVNKWDAVDDYQRQQLQRQLETRLTFLKFANLHL--ISARKRQGL 337 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKT-QLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 + L S+L+ ++ +++T L LQ+ Q Q P + R +L+Y Q +PP Sbjct: 338 EPLWKSMLKAHQAANRKMSTPVLTRLLQQAVQFQTPKKSGMYR-PKLRYAHQGGMNPPVI 396 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 ++ + ++YKRYL R F L+G P+R+ ++S NPY K Sbjct: 397 VVHGNSLEHVSDAYKRYLEGWFRKEFDLTGTPLRIEMKTSTNPYTDK 443 >gi|312622952|ref|YP_004024565.1| ribosome-associated GTPase enga [Caldicellulosiruptor kronotskyensis 2002] gi|312203419|gb|ADQ46746.1| ribosome-associated GTPase EngA [Caldicellulosiruptor kronotskyensis 2002] Length = 440 Score = 272 bits (695), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 146/453 (32%), Positives = 242/453 (53%), Gaps = 28/453 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AIVG PNVGKSTLFNRL+ ++ A+V + PGITRDR+ G+ G+ FN++DT GI Sbjct: 4 TVAIVGRPNVGKSTLFNRLIGERRAIVDDTPGITRDRIIGETEWRGITFNVIDTGGIEPY 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 I KQM Q + AI+ + +I+F++D K G+T D + + LR PI++ NK+D Sbjct: 64 SEDIILKQMRRQAQFAIDMSDVIIFMVDGKTGLTDADREVANMLRASKKPIVLAVNKIDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 Q YE Y L + + +SAEH G ++ + F Sbjct: 124 ISQQAMIYEFYELGLSDPIAMSAEHGAGVGDVLDAVVNYFN------------------- 164 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 KE I + ++K +A++G+PN GKS+L+N +LG R++ G TRD++ Sbjct: 165 --KEGINEIEEGTIK-------VAIIGKPNTGKSSLVNYILGEERVIVSDIPGTTRDAID 215 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 ++ ++ PI + DTAG+R+ S+I +++E+ ++ +++Q++ + I+LLD T +QD Sbjct: 216 STFEFEGIPITLIDTAGLRRKSKIYDNVERYSMLRTLQAIERSDICIILLDGTENVSEQD 275 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 ++ + G ++A+NKWD V + + + + L + + IS +TG Sbjct: 276 AKVAGYAYEAGKGCIVAVNKWDAVEKDEKTADEFKKQIEEKLSFLKFAPVLFISAKTGFR 335 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 + L+ +VL + + RITT LN L + PP+ + ++ Y+TQ+ PP Sbjct: 336 VKKLLETVLYVYDNYTRRITTGQLNDVLAEATTIYQPPSDKGKQLKIYYMTQVGEKPPKI 395 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 IF + SY+RY+ N LR F +G+PI Sbjct: 396 AIFVNSKDLFHFSYQRYIENYLRKTFDFTGVPI 428 >gi|304398581|ref|ZP_07380453.1| ribosome-associated GTPase EngA [Pantoea sp. aB] gi|304353792|gb|EFM18167.1| ribosome-associated GTPase EngA [Pantoea sp. aB] Length = 496 Score = 272 bits (695), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 164/479 (34%), Positives = 261/479 (54%), Gaps = 16/479 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A + G F ++DT GI Sbjct: 1 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFIVIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ LAI EA ++LF++D++AG+ D I LR + +V+NK Sbjct: 61 -DGTEEGVETRMAEQSLLAIEEADVVLFMVDARAGMMAADQQIAKHLRSRQKATFLVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 D + + YSL EI I+A H G S L + +K L E N+ Sbjct: 120 TDGMDPDQAIVDFYSLGLGEIHAIAASHGRGVSSLIEEALLPWMEKVEAVELTEEEENQA 179 Query: 181 -----NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQS 235 + E +E + + P+++A+VGRPNVGKSTL NR+LG +R++ Sbjct: 180 YWAALEADEIAEQEAAEEEENFDPTGLPIKLAIVGRPNVGKSTLTNRILGEDRVVVYDMP 239 Query: 236 GITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDA 295 G TRDS+ I + DTAG+RK ++I++++E+ +V K++Q++ ++++DA Sbjct: 240 GTTRDSIYIPMERDGREYVLIDTAGVRKRAKISDTVEKFSVIKTLQAIEDANVVMLVIDA 299 Query: 296 TIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLP-QIGDI--- 351 QDL ++ + N+G ++V+ +NKWD +S Q++R + + L ++G I Sbjct: 300 HAGISDQDLSLLGFILNSGRSLVIVVNKWDGLS------QEVRDEVKETLDFRLGFIDFA 353 Query: 352 YINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLK 411 I+ IS G G+ +L S+ E R+ TS L + + PP + R +LK Sbjct: 354 RIHFISALHGSGVGNLFESITEAYDCSTRRVNTSLLTRIMNMAADDHQPPLVRGRRVKLK 413 Query: 412 YITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 Y +PP +I +P+SYKRYL+N R + ++ G PIR+ F+ NPY K Sbjct: 414 YAHAGGYNPPIVVIHGNQVKDLPDSYKRYLMNYFRKSLNVMGTPIRIQFKEGDNPYEGK 472 >gi|319787003|ref|YP_004146478.1| ribosome-associated GTPase EngA [Pseudoxanthomonas suwonensis 11-1] gi|317465515|gb|ADV27247.1| ribosome-associated GTPase EngA [Pseudoxanthomonas suwonensis 11-1] Length = 465 Score = 271 bits (694), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 163/472 (34%), Positives = 252/472 (53%), Gaps = 31/472 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIIN-GVIFNIVDTAG 59 M+ +A+VG PNVGKSTLFN L + + A+V + PG+TRDR YG ++ F +VDT G Sbjct: 1 MLPLVALVGRPNVGKSTLFNALTRSRDALVHDEPGVTRDRHYGVCRLDPDRPFLLVDTGG 60 Query: 60 IADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 IA G +A Q A EA LILF++D + G + D I S+LRK P ++V N Sbjct: 61 IA-GDEEGLAGATARQARAAAAEADLILFVVDGREGTSALDDEILSWLRKLARPTLLVVN 119 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNK 179 K+D + E F +++ +SA H G +LH+ + Sbjct: 120 KIDGTFEEAVRGEFARYGFADMLAVSAAHRQGLDDLHAEVL------------------- 160 Query: 180 RNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITR 239 E P+E E + N LRIA VGRPNVGKSTL+NR+LG R++ G TR Sbjct: 161 --ERLPEEGSVEE----LDNDPDRLRIAFVGRPNVGKSTLVNRVLGEERMIASEVPGTTR 214 Query: 240 DSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPF 299 DS+++ + DTAG+R+ +I E++E+ +V K++Q++ C+ +++LDAT Sbjct: 215 DSIAVDLERDGRLYRLIDTAGIRRKGKIEEAVEKFSVVKTLQAIERCQVAVLMLDATEGV 274 Query: 300 EKQDLRIVDSVFNTGHAVVLALNKWD-MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 QD ++ +V + G A+V+A+NKWD + + + + L + + +P + IS Sbjct: 275 TDQDATVLGAVLDAGRALVIAVNKWDGLTTYQREQAEALLERKLGFVPWAEAV---RISA 331 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 + G GL +L ++ + +TS +N L+ NPPP+I ++L+Y+ Sbjct: 332 KHGSGLRELFRAIHRAHASAIRTFSTSEVNKALEIAAETNPPPSIRGHVSKLRYVHPGGE 391 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP+F++ T +P+SYKRYL N R F L G P+RM F+ NPY K Sbjct: 392 NPPTFVVHGTRLKVLPDSYKRYLENFFRKRFKLVGTPVRMLFREGANPYEGK 443 >gi|148656272|ref|YP_001276477.1| GTP-binding protein EngA [Roseiflexus sp. RS-1] gi|148568382|gb|ABQ90527.1| small GTP-binding protein [Roseiflexus sp. RS-1] Length = 493 Score = 271 bits (694), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 158/468 (33%), Positives = 256/468 (54%), Gaps = 40/468 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTLFNRL+ ++ A+V + PG TRDRLYG NG +F +VDTAG+ + Sbjct: 5 VALVGRPNVGKSTLFNRLIGERRAIVEDIPGTTRDRLYGDTEWNGRVFTVVDTAGLLLDE 64 Query: 65 N--------CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIII 116 + IA+++ +Q E+AI EA I+F++DS+ G+T D A+ LR+ + P+++ Sbjct: 65 DDLTPGTPQLEIARRVREQAEIAIEEADAIIFIVDSREGLTAADAAVAEVLRRASKPVVL 124 Query: 117 VSNKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIE 176 +NK D R + E Y+L+ E + +SA H +G ++ + + L +IE Sbjct: 125 AANKADNRERALDAVEFYALNLGEPIPMSAYHGIGVGDVLDRVTDV---------LPIIE 175 Query: 177 NNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSG 236 E ++VK IA+VGRPNVGKS+L+NRL+G R + G Sbjct: 176 -------------AEEDDAAVK-------IAIVGRPNVGKSSLLNRLIGQERSVVSDVPG 215 Query: 237 ITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDAT 296 TRDS+ + DTAG+R+ +I LE+ +V ++++++ + ++L+DAT Sbjct: 216 TTRDSIDTPVEIDGIKALLIDTAGIRRRGKIERGLERYSVMRALRAIERADVALLLIDAT 275 Query: 297 IPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQ-IGDIYINT 355 QD I + + V + +NKWD+V K N D ++ ++ + I + Sbjct: 276 EGVTAQDTHIAGMILESLKGVAILVNKWDLVV-KDNTTFDAFSRHVREAFKFISYAPLLF 334 Query: 356 ISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIF-NRYNRLKYIT 414 IS +TG+ +D ++ LEI + RI TS LN+ L++ ++PP + + R+ Y T Sbjct: 335 ISAKTGQRVDKVLPLALEIASNRQRRIPTSELNTLLRRATYEHPPTAVHKGAHLRIYYAT 394 Query: 415 QIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 Q Q +PP FL F ++ Y RYL NR+R + +G PI++ F+S Sbjct: 395 QPQVAPPVFLFFANQAEQVHWGYARYLENRIRERYDFTGTPIKIVFRS 442 >gi|91217172|ref|ZP_01254134.1| GTP-binding protein EngA [Psychroflexus torquis ATCC 700755] gi|91184772|gb|EAS71153.1| GTP-binding protein EngA [Psychroflexus torquis ATCC 700755] Length = 442 Score = 271 bits (694), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 149/456 (32%), Positives = 246/456 (53%), Gaps = 37/456 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTLFNR++K++ A+V + G+TRDR YG++ NG F ++DT G G Sbjct: 13 VAVVGRPNVGKSTLFNRMIKRREAIVDSASGVTRDRHYGKSDWNGREFTLIDTGGYVIGS 72 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + K+++ Q ELAI+EA +I+F++D GITP D ++ LRK N P+++ NK+D+ Sbjct: 73 DDVFEKEIDKQVELAIDEADVIIFVVDVITGITPMDEDVSKLLRKINKPVVLCVNKVDSN 132 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + E Y+L E ISA GT EL + Sbjct: 133 KNRTDALEFYNLGLGEYYSISATSGSGTGELLDAV------------------------- 167 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 + + ++ + AVVGRPN GKS+ IN L+G +R + G TRDS+ Sbjct: 168 ----VEKLPERELEEEEDLPKFAVVGRPNAGKSSFINALIGEDRYIVTDIPGTTRDSIDT 223 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + ++ DTAG+R+ +++ E LE +V +S++++ + ++++DA+ F+ Q Sbjct: 224 RYTRFGFDFKLVDTAGIRRKAKVKEDLEFYSVMRSVRAIENSDVCLIVMDASRGFDSQ-- 281 Query: 305 RIVDSVF----NTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 V S+F +V+ +NKWD+V + N ++D K + + D+ I IS Sbjct: 282 --VQSIFWLAEKNRKGIVILVNKWDLVKKETNTMKDFEAKVREEISPFVDVPIVFISVLN 339 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 + + + + +E+ K T+I T LN L NPPP + +Y ++KYITQ+ + Sbjct: 340 KQRIYKAIETAVEVYKNRSTKIKTRVLNDILLPIIAANPPPALKGKYVKIKYITQLPTPQ 399 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 P F FC P + +SYKR++ N+LR F+ +G+P+ Sbjct: 400 PQFAFFCNLPQYVKDSYKRFIENKLRQEFNFNGVPV 435 >gi|323143788|ref|ZP_08078456.1| ribosome biogenesis GTPase Der [Succinatimonas hippei YIT 12066] gi|322416501|gb|EFY07167.1| ribosome biogenesis GTPase Der [Succinatimonas hippei YIT 12066] Length = 568 Score = 271 bits (694), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 160/501 (31%), Positives = 270/501 (53%), Gaps = 40/501 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA-DG 63 +A+VG PNVGKSTLFNRL K + A+V + PG+TRDR YG+A+ +G + ++DT GIA D Sbjct: 4 VALVGCPNVGKSTLFNRLTKTRDALVADFPGLTRDRKYGRALFDGREYIVIDTGGIAKDA 63 Query: 64 KNCS-IAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + S + +M +Q LAI E L+LF++D++AGI P D+ + ++RK +V+NK+D Sbjct: 64 EQPSDLTSKMTEQALLAIEECDLVLFMVDARAGIMPGDYQVAEYIRKSGKKCAVVANKID 123 Query: 123 TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL-HSVIFKIFKQKYP------------- 168 E Y L E+ +I+A H G L VI + ++ P Sbjct: 124 GLDPDIAGTEFYGLGLGEVHQIAAAHGRGVQILIEDVIAPVLREDGPLDSDLPEVPEGED 183 Query: 169 ------NHPLEMIENNK-------------RNEESPKENITSEGKSSVKNI---SKPLRI 206 H E +EN R ++ ++ E + + ++ P++ Sbjct: 184 PEGYIWEHGYEFLENVPAEKNAGGFDWYAFREKQRGLQHTDDEAEKAAEHTPFADLPIKF 243 Query: 207 AVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSR 266 A+VG+PNVGKSTL NRLLG +R++ G TRDS+ I ++ + DTAG+RK + Sbjct: 244 ALVGKPNVGKSTLTNRLLGEDRVVVCDMPGTTRDSIYIPLEREHKKYIVIDTAGVRKRRK 303 Query: 267 ITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 ++E++E+ ++ K+++++ C ++++DA QDL ++ + ++G ++V+A+NKWD Sbjct: 304 VSEAIEKFSIVKTLKAIEDCNVAVLVIDARENITDQDLSLLGFILDSGRSLVIAVNKWDG 363 Query: 327 VSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSY 386 +S + D+R + L + ++ IS G G+ ++ S+ E + R +++ Sbjct: 364 LSKEYK--DDIRRELNLRLGFVDFARVHFISALHGTGVGNIFDSIDEAYESATRRNSSAT 421 Query: 387 LNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLR 446 LN LQ ++ PP R +LKY +PP +I +K+P++YKRYLIN R Sbjct: 422 LNRVLQAAVQEHEPPISGGRRIKLKYAHAGGYNPPRIVIHGNKVSKMPDAYKRYLINCYR 481 Query: 447 INFSLSGIPIRMCFQSSKNPY 467 ++ G P+ + F+ NPY Sbjct: 482 KALNIMGTPVILEFKEGINPY 502 >gi|84387629|ref|ZP_00990646.1| GTP-binding protein EngA [Vibrio splendidus 12B01] gi|84377474|gb|EAP94340.1| GTP-binding protein EngA [Vibrio splendidus 12B01] Length = 493 Score = 271 bits (694), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 163/477 (34%), Positives = 261/477 (54%), Gaps = 14/477 (2%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG A + F ++DT GI Sbjct: 1 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHFSEHDFIVIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ AI+EA ++LF++D +AG+TP D AI LR+ P ++V NK Sbjct: 61 -DGTEEGVETKMAEQSLAAIDEADVVLFMVDGRAGLTPSDVAIAKHLRQLEKPSMLVVNK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQ--KYPNHPLEMIENN 178 +D + + L +++ +I+A H G + L + F + K N + + Sbjct: 120 VDGIDPDAASADFWQLGVEDMYQIAAAHGRGVTALIDLALNPFAEALKAENGEVSDLTEF 179 Query: 179 KRNEESPKENITSEGKSSVKNI-SKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGI 237 + EE + E + K + +P+++A++GRPNVGKSTL NR+LG R++ G Sbjct: 180 EDEEEEQVDFTEEEAEEEFKRLQDQPIKLAIIGRPNVGKSTLTNRILGEERVVVYDMPGT 239 Query: 238 TRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATI 297 TRDS+ I + DTAG+R+ I E++E+ +V K+++++ ++L+DA Sbjct: 240 TRDSIYIPMQRDEREYVLIDTAGVRRRKNINETVEKFSVVKTLKAIEDANVVLLLIDARD 299 Query: 298 PFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQ----IGDIYI 353 QDL ++ N G ++V+A+NKWD L D++ + K L + + I Sbjct: 300 NISDQDLSLLGFALNAGRSIVIAVNKWD------GLDSDVKDRVKKELDRRLGFVDFARI 353 Query: 354 NTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYI 413 + IS G G+ L SV E K TR+ TS L ++ + PP + R +LKY Sbjct: 354 HFISALHGTGVGHLFESVQEAYKSATTRVGTSVLTRIMKMATDDHQPPMVRGRRVKLKYA 413 Query: 414 TQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I +P+SYKR+L+N R + + G PIR+ FQ+S+NP+ K Sbjct: 414 HAGGYNPPIIVIHGNQVRNLPDSYKRFLMNYYRRSLEIMGTPIRIQFQNSENPFEAK 470 >gi|104773911|ref|YP_618891.1| GTP-binding protein EngA [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116513918|ref|YP_812824.1| GTP-binding protein EngA [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|37999708|sp|Q8KH12|DER_LACDA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|122275312|sp|Q04AY6|DER_LACDB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|21633222|gb|AAM22484.1| conserved hypothetical GTP-binding protein [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103422992|emb|CAI97674.1| Putative GTP-binding protein [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116093233|gb|ABJ58386.1| Predicted GTPase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|325125585|gb|ADY84915.1| Probable GTP-binding protein engA [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 435 Score = 271 bits (694), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 148/460 (32%), Positives = 249/460 (54%), Gaps = 30/460 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNR++ +++A+V + PG+TRDR Y +A G F+I+DT GI + Sbjct: 6 VAIVGQPNVGKSTLFNRIINERVAIVEDRPGVTRDRNYARASWMGHQFSIIDTGGIT-WE 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +I +++ Q E+AI EA +I+ L D+ G+T D I L + + P+++ NK D Sbjct: 65 DSTIDEEIRAQAEIAIEEADVIVMLADASQGVTSLDERIAHLLYRADKPVLLAVNKADNP 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + Y+ YSL + + +S H G +L + K F S Sbjct: 125 EQRTDIYDFYSLGLGDPIPVSGSHGTGIGDLLDEVVKNF--------------------S 164 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P T EG S +V+GRPNVGKS+++NRLLG R++ ++ G TRD++ Sbjct: 165 PDAEKTEEGVIS---------FSVIGRPNVGKSSIVNRLLGEERVIVANEEGTTRDAIDT 215 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + DTAG+R+ ++ E E+ +V ++M ++ + I++LDA+ +QD Sbjct: 216 PFVKDGTKFRVVDTAGIRRRGKVYEKTEKYSVMRAMSAMERSDVAILVLDASTGIREQDK 275 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 + G +++A+NKWD+ + +D + + I +S +TG+ + Sbjct: 276 HVAGYAHEAGLGMIIAVNKWDLPKKDSSSGKDFEAVIREEFSYLDYAPIVFVSAKTGKNI 335 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 D L V E+ + RI +S LN L + P P + + R+ Y+TQ++++PP+F+ Sbjct: 336 DQLPKMVKEVYENKNQRIQSSVLNDLLLEASRLVPAPMVKGKRLRVYYMTQVKTNPPTFV 395 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 +FC P + SY+R+LIN+LR NF +G PI++ + K Sbjct: 396 VFCNDPELMHFSYQRFLINQLRENFDFTGTPIKILPRKRK 435 Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 46/181 (25%), Positives = 90/181 (49%), Gaps = 21/181 (11%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI- 60 + + +++G PNVGKS++ NRL+ ++ +V N G TRD + + +G F +VDTAGI Sbjct: 174 VISFSVIGRPNVGKSSIVNRLLGEERVIVANEEGTTRDAIDTPFVKDGTKFRVVDTAGIR 233 Query: 61 ------ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPI 114 + S+ + M+ A+ + + + ++D+ GI D + + + + + Sbjct: 234 RRGKVYEKTEKYSVMRAMS-----AMERSDVAILVLDASTGIREQDKHVAGYAHEAGLGM 288 Query: 115 IIVSNKMD----TRIAQRNF-----YEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQ 165 II NK D + ++F E LD+ IV +SA+ +L ++ ++++ Sbjct: 289 IIAVNKWDLPKKDSSSGKDFEAVIREEFSYLDYAPIVFVSAKTGKNIDQLPKMVKEVYEN 348 Query: 166 K 166 K Sbjct: 349 K 349 >gi|307245234|ref|ZP_07527325.1| GTP-binding protein engA [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307254181|ref|ZP_07536026.1| GTP-binding protein engA [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258646|ref|ZP_07540381.1| GTP-binding protein engA [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306853878|gb|EFM86092.1| GTP-binding protein engA [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306862881|gb|EFM94830.1| GTP-binding protein engA [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306867303|gb|EFM99156.1| GTP-binding protein engA [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 506 Score = 271 bits (694), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 162/485 (33%), Positives = 264/485 (54%), Gaps = 18/485 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG A I G F ++DT GI Sbjct: 1 MTPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHANIAGYDFIVIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + ++M +Q+ LAI EA ++LFL+D++AG+ P D I +LR++ ++V+NK Sbjct: 61 -DGTEEGVEEKMAEQSLLAIEEADVVLFLVDARAGLVPADIGIAQYLRQREKTTVVVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL-HSVIFKIFKQKYPNHPLEMIE--- 176 D A + E Y L E+ +I+A G ++L V+ + +Q + +E E Sbjct: 120 TDGIDADSHCAEFYQLGLGEVEQIAAAQGRGVTQLIDQVLAPLGEQLNADQAVENEENSA 179 Query: 177 -----------NNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLG 225 + + +++ + E ++ K ++IA+VGRPNVGKSTL NR+LG Sbjct: 180 NEEADEWDTDFDFENEDDTALLDEALEEETEESIEDKNIKIAIVGRPNVGKSTLTNRILG 239 Query: 226 YNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRT 285 +R++ G TRDS+ I I DTAG+RK ++ ++E+ +V K++Q+++ Sbjct: 240 EDRVVVYDMPGTTRDSIYIPMERDGQQYTIIDTAGVRKRGKVNLAVEKFSVIKTLQAIQD 299 Query: 286 CETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNL 345 ++ +DA QDL ++ + N G ++V+ +NKWD +S ++ ++++ + L Sbjct: 300 ANVVLLTIDAREGISDQDLSLLGFILNAGRSLVIVVNKWDGLSQ--DIKDQVKSELDRRL 357 Query: 346 PQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFN 405 I ++ IS G G+ +L SV E + +TS L L+ ++ PP + Sbjct: 358 DFIDFARVHFISALHGSGVGNLFDSVKEAYACATQKTSTSMLTRILRMAADEHQPPLVNG 417 Query: 406 RYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 R +LKY +PP +I K+ +SYKRYL N R + + G PIR+ FQ N Sbjct: 418 RRVKLKYAHPGGYNPPIIVIHGNQVEKLADSYKRYLSNYFRKSLKIIGSPIRIQFQEGNN 477 Query: 466 PYIKK 470 P+ K Sbjct: 478 PFAGK 482 >gi|198283717|ref|YP_002220038.1| GTP-binding protein EngA [Acidithiobacillus ferrooxidans ATCC 53993] gi|218667499|ref|YP_002426346.1| ribosome-associated GTPase EngA [Acidithiobacillus ferrooxidans ATCC 23270] gi|226741127|sp|B7JC34|DER_ACIF2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|238690897|sp|B5EJF7|DER_ACIF5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|198248238|gb|ACH83831.1| small GTP-binding protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218519712|gb|ACK80298.1| ribosome-associated GTPase EngA [Acidithiobacillus ferrooxidans ATCC 23270] Length = 449 Score = 271 bits (694), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 164/474 (34%), Positives = 242/474 (51%), Gaps = 42/474 (8%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M IA+VG PNVGKST FNRL + + A+V + PG+TRDR YG A G + +VDT G Sbjct: 1 MTAVIALVGRPNVGKSTFFNRLTRTREALVADLPGLTRDRHYGTAQFEGRQYLVVDTGGF 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + + M QT LAI EA I FL+D+K G++ D I LR+ PI +V NK Sbjct: 61 EPEEREGLVAAMAAQTRLAITEADAICFLVDAKEGLSTQDAEIAQELRRGGKPIYLVVNK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 MD + A E Y L ISA H G L IF Sbjct: 121 MDAKGAVSELPEFYRLGLGTPYTISAAHGHGVEPLLEAIFSDLP---------------- 164 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 TSE ++ P RIA++GRPNVGKSTL+N +LG R+L + G TRD Sbjct: 165 ---------TSEDDTADAARKGP-RIAMLGRPNVGKSTLVNTMLGEKRVLVFDEPGTTRD 214 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ I + + P + DTAGMR+ +R+ E LE+ +V K++ ++R + +++LDA + Sbjct: 215 SIRIPYERQGKPYVMIDTAGMRRRARVGEGLEKLSVLKTLSALREADVVLLVLDARLGIA 274 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVS--DKLNLLQDL--RTKAIKNLPQIGDIYINTI 356 +QD +V G +V+ +NKWD ++ ++ + Q+L R I+ P + TI Sbjct: 275 EQDAHLVGVAVELGRPIVVVVNKWDGMTPEERKAVKQELERRLDFIRYAP------VYTI 328 Query: 357 SGRTGEGLDDLMVSVLEINKLW---KTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYI 413 S G G+ DL S I++LW + +T+ LN L + PP + R +L+Y Sbjct: 329 SALHGTGVGDLYKS---IDQLWIDSRRHFSTAELNRALADVIETHQPPMVGGRRIKLRYC 385 Query: 414 TQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 Q +P + + ++P +YKRYL + R L +P+R+ F+ +NPY Sbjct: 386 HQGGENPITLVFHGNQLTRLPGTYKRYLESAFRRALHLEAVPLRLVFRQGENPY 439 >gi|304311812|ref|YP_003811410.1| GTP-binding protein [gamma proteobacterium HdN1] gi|301797545|emb|CBL45765.1| GTP-binding protein [gamma proteobacterium HdN1] Length = 474 Score = 271 bits (693), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 162/472 (34%), Positives = 248/472 (52%), Gaps = 32/472 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +A+VG PNVGKSTLFNRL K + A+V + PG+TRDR YG+A + F ++DT GI Sbjct: 1 MKAAVALVGRPNVGKSTLFNRLTKTRDAIVADMPGLTRDRKYGEARVGAHAFLVIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 G+ I M +Q+ LAI EA L+ F++D+KAG+T D + LR + P+ +V NK Sbjct: 61 T-GEEEGIDSLMAEQSMLAIEEADLVFFIVDAKAGLTAGDEVLAQRLRVREKPLYVVVNK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D + + E L + ISA H G +++ +F E+ Sbjct: 120 IDGQDSDEALAEFSRLGLGDPFFISASHGRGVTQMIDDVFGAVG-----------EDAIL 168 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 E +P++ +RIAVVGRPNVGKSTLINR+LG R++ G TRD Sbjct: 169 PEPTPEDT--------------GIRIAVVGRPNVGKSTLINRMLGEERVVVFDMPGTTRD 214 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ I + + + DTAG+RK R+ E++E+ +V K++Q++ I++LDA Sbjct: 215 SIYIPYERRGQKYTLIDTAGVRKRGRVDEAVEKFSVIKTLQAIEDAHVVILVLDAREGIV 274 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKA--IKNLPQIGDIYINTISG 358 QDL ++ V TG ++++ALNKWD + D Q R K + + + I+ IS Sbjct: 275 DQDLHLLGFVLETGRSLLIALNKWDGMDD----YQKSRVKVEIDRRMEFVSFAKIHFISA 330 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 G G+ DL SV + R++T L L+ PP + R +L+Y Sbjct: 331 LHGTGVGDLYGSVERAYQSAFRRLSTPALTRILEDAIADYQPPLVGGRRIKLRYAHMGGV 390 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I + +P SY+RYL N L G P+++ F++S+NP+ + Sbjct: 391 NPPRIVIHGNQTDSVPGSYRRYLENTFHRLMKLEGTPLQVEFKTSENPFAGR 442 >gi|257453876|ref|ZP_05619154.1| ribosome-associated GTPase EngA [Enhydrobacter aerosaccus SK60] gi|257448803|gb|EEV23768.1| ribosome-associated GTPase EngA [Enhydrobacter aerosaccus SK60] Length = 467 Score = 271 bits (693), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 161/469 (34%), Positives = 248/469 (52%), Gaps = 35/469 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA--D 62 +A++G PNVGKSTLFN+L + + A+V + G+TRDR YG A F ++DT GI D Sbjct: 5 VALIGRPNVGKSTLFNQLTRSRQALVADLAGLTRDRQYGDATFEEKSFIVIDTGGIGEVD 64 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + +I M+ Q+ AI+EA +I+F++DS+AGIT D I L P+ + +NKMD Sbjct: 65 EGDGTIDDYMSHQSHTAIHEADIIVFVVDSRAGITGADEVIAKQLHTLGKPVFLAANKMD 124 Query: 123 TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 + + +E Y+L F E ++A H G L LE + N + Sbjct: 125 G-VHEAAIHEFYALGFGEPFPMAASHGRGVGNL----------------LEAVTANMPTD 167 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 + +E +G LRIA++GRPNVGKSTL+NRLLG R++ G TRDS+ Sbjct: 168 D--QEEQAPDG----------LRIAIIGRPNVGKSTLVNRLLGEERVVVFDMPGTTRDSI 215 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 I + N + DTAG+R+ RI E +E+ +V K++Q+++ IV++DA Q Sbjct: 216 YIPYERDNRHYVLIDTAGVRRRGRIDEKVEKFSVVKTLQAIKDAHVVIVVIDAQEGITDQ 275 Query: 303 DLRIVDSVFNTGHAVVLALNKWD-MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTG 361 DL ++ G A+VLA+NKWD + D+ N ++ + +P + ++ IS G Sbjct: 276 DLNLLGYALEAGRAMVLAINKWDGLDQDQKNFVKIEMDRRFNFIPY---VKVHLISALHG 332 Query: 362 EGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 G+ +L S+ I+TS L LQ + PP + R +L++ +PP Sbjct: 333 TGVGNLYPSIHRAYDAAMFDISTSRLTQILQDAVTAHQPPMVGGRRIKLRFAHLGGHNPP 392 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +I +++P SY+RYL N R F L G PIR+ F+ + NPY + Sbjct: 393 IIVIHGNQTSQVPNSYRRYLENEFRKVFKLEGTPIRVEFKQNANPYAGR 441 >gi|86145598|ref|ZP_01063928.1| GTP-binding protein EngA [Vibrio sp. MED222] gi|85836569|gb|EAQ54695.1| GTP-binding protein EngA [Vibrio sp. MED222] Length = 493 Score = 271 bits (693), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 163/477 (34%), Positives = 261/477 (54%), Gaps = 14/477 (2%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG A + F ++DT GI Sbjct: 1 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHFSEHDFIVIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ AI+EA ++LF++D +AG+TP D AI LR+ P ++V NK Sbjct: 61 -DGTEEGVETKMAEQSLAAIDEADVVLFMVDGRAGLTPSDVAIAKHLRQLEKPSMLVVNK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQ--KYPNHPLEMIENN 178 +D + + L +++ +I+A H G + L + F + K N + + Sbjct: 120 VDGIDPDAASADFWQLGVEDMYQIAAAHGRGVTALIDLALNPFAEALKAENGEVSDLTEF 179 Query: 179 KRNEESPKENITSEGKSSVKNI-SKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGI 237 + EE + E + K + +P+++A++GRPNVGKSTL NR+LG R++ G Sbjct: 180 EDEEEEQVDFTEEEAEEEFKRLQDQPIKLAIIGRPNVGKSTLTNRILGEERVVVYDMPGT 239 Query: 238 TRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATI 297 TRDS+ I + DTAG+R+ I E++E+ +V K+++++ ++L+DA Sbjct: 240 TRDSIYIPMQRDEREYVLIDTAGVRRRKNINETVEKFSVVKTLKAIEDANVVLLLIDARE 299 Query: 298 PFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQ----IGDIYI 353 QDL ++ N G ++V+A+NKWD L D++ + K L + + I Sbjct: 300 NISDQDLSLLGFALNAGRSIVIAVNKWD------GLDNDVKDRVKKELDRRLGFVDFARI 353 Query: 354 NTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYI 413 + IS G G+ L SV E K TR+ TS L ++ + PP + R +LKY Sbjct: 354 HFISALHGTGVGHLFESVQEAYKSATTRVGTSVLTRIMKMATDDHQPPMVRGRRVKLKYA 413 Query: 414 TQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I +P+SYKR+L+N R + + G PIR+ FQ+S+NP+ K Sbjct: 414 HAGGYNPPIIVIHGNQVRNLPDSYKRFLMNYYRRSLEIMGTPIRIQFQNSENPFEAK 470 >gi|218708645|ref|YP_002416266.1| GTP-binding protein EngA [Vibrio splendidus LGP32] gi|254783178|sp|B7VJU2|DER_VIBSL RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|218321664|emb|CAV17618.1| GTP-binding protein engA [Vibrio splendidus LGP32] Length = 493 Score = 271 bits (693), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 163/477 (34%), Positives = 261/477 (54%), Gaps = 14/477 (2%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG A + F ++DT GI Sbjct: 1 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHAHFSEHDFIVIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ AI+EA ++LF++D +AG+TP D AI LR+ P ++V NK Sbjct: 61 -DGTEEGVETKMAEQSLAAIDEADVVLFMVDGRAGLTPSDVAIAKHLRQLEKPSMLVVNK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQ--KYPNHPLEMIENN 178 +D + + L +++ +I+A H G + L + F + K N + + Sbjct: 120 VDGIDPDAASADFWQLGVEDMYQIAAAHGRGVTALIDLALNPFAEALKAENGEVSDLTEF 179 Query: 179 KRNEESPKENITSEGKSSVKNI-SKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGI 237 + EE + E + K + +P+++A++GRPNVGKSTL NR+LG R++ G Sbjct: 180 EDEEEEQVDFTEEEAEEEFKRLQDQPIKLAIIGRPNVGKSTLTNRILGEERVVVYDMPGT 239 Query: 238 TRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATI 297 TRDS+ I + DTAG+R+ I E++E+ +V K+++++ ++L+DA Sbjct: 240 TRDSIYIPMQRDEREYVLIDTAGVRRRKNINETVEKFSVVKTLKAIEDANVVLLLIDARE 299 Query: 298 PFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQ----IGDIYI 353 QDL ++ N G ++V+A+NKWD L D++ + K L + + I Sbjct: 300 NISDQDLSLLGFALNAGRSIVIAVNKWD------GLDNDVKDRVKKELDRRLGFVDFARI 353 Query: 354 NTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYI 413 + IS G G+ L SV E K TR+ TS L ++ + PP + R +LKY Sbjct: 354 HFISALHGTGVGHLFESVQEAYKSATTRVGTSVLTRIMKMATDDHQPPMVRGRRVKLKYA 413 Query: 414 TQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I +P+SYKR+L+N R + + G PIR+ FQ+S+NP+ K Sbjct: 414 HAGGYNPPIIVIHGNQVRNLPDSYKRFLMNYYRRSLEIMGTPIRIQFQNSENPFEAK 470 >gi|170723482|ref|YP_001751170.1| GTP-binding protein EngA [Pseudomonas putida W619] gi|229784138|sp|B1JDV4|DER_PSEPW RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|169761485|gb|ACA74801.1| small GTP-binding protein [Pseudomonas putida W619] Length = 487 Score = 271 bits (693), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 171/477 (35%), Positives = 256/477 (53%), Gaps = 27/477 (5%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ IA+VG PNVGKST+FNRL K + A+VG+ G+TRDR YG A G F ++DT GI Sbjct: 1 MVPVIALVGRPNVGKSTMFNRLTKTRDAIVGDLSGLTRDRQYGDASWQGRSFILIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 G + ++M +Q+ +AI EA +LFL+D++AG+T D I LRK+N I+V+NK Sbjct: 61 T-GDEVGMDEKMAEQSLMAIEEADYVLFLVDARAGMTAADQMIAEHLRKRNKSAILVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL-HSVIFKIFKQKYPNHPLEMIENNK 179 +D A E L + ++ G ++L SV+ I + Sbjct: 120 IDNIDADVARAEFSPLGMGNAIPVAGSQGRGINQLMESVLGHIPRDA------------- 166 Query: 180 RNEESPKENITSEGKSSVKNISKP-----LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQ 234 EE + +EG+ +V+ I P ++IA++GRPNVGKSTL+NR+LG R++ Q Sbjct: 167 --EEEALDQEVAEGEEAVR-IPGPSEKDGIKIAIIGRPNVGKSTLVNRMLGEERVVVYDQ 223 Query: 235 SGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLD 294 G TRDS+ I + N DTAG+RK +I E +E+ +V K++Q+++ I ++D Sbjct: 224 PGTTRDSIYIPFERDNEKYTFIDTAGVRKRGKIHEEVEKFSVVKTLQAIKDANVVIFVMD 283 Query: 295 ATIPFEKQDLRIVDSVFNTGHAVVLALNKWD-MVSDKLNLLQDLRTKAIKNLPQIGDIYI 353 A DL ++ G A+V+ALNKWD M S + + ++T+ + L + I Sbjct: 284 AREGVVDHDLNLLGFALEAGRAIVIALNKWDGMESGERDY---VKTELERRLFFVDFADI 340 Query: 354 NTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYI 413 + IS G G+ L SV K TR TS L L+ ++ PP + R +L+Y Sbjct: 341 HFISALHGTGVGHLYKSVQAAFKSAVTRWPTSRLTQILEDAVSEHQPPLVNGRRIKLRYA 400 Query: 414 TQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 ++PP +I KIP+SY RYL N R L G PIR+ ++ +NPY K Sbjct: 401 HLGGANPPLIVIHGNQTEKIPKSYSRYLENTYRRVLKLVGTPIRIEYKGGENPYEGK 457 >gi|86158079|ref|YP_464864.1| GTP-binding protein EngA [Anaeromyxobacter dehalogenans 2CP-C] gi|85774590|gb|ABC81427.1| small GTP-binding protein [Anaeromyxobacter dehalogenans 2CP-C] Length = 465 Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 151/464 (32%), Positives = 247/464 (53%), Gaps = 18/464 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTLFNRL +++A+V + PG+TRDR Y I G ++VDT G Sbjct: 8 VALVGRPNVGKSTLFNRLAGRRVAIVEDVPGVTRDRNYADVIWEGRAVSVVDTGGFEPES 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + Q+ +Q +LA++EA +++ ++D + G+T D A+ LR+ P+ + NK+DT Sbjct: 68 RDRLMSQVREQAQLAVDEASVVVLVVDGRDGLTSLDRAVAELLRRAGKPLFVAVNKVDTA 127 Query: 125 IAQRN--FYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 + + E Y L F E+ +SAEH G S L I + + Sbjct: 128 RTEEDVPLAEFYGLGFGEVHALSAEHGRGVSGLVDAIVEKLALP-------PLPPAPEEA 180 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 + P+E SE V +I R+A+VGRPNVGKST +N LLG R + G TRD++ Sbjct: 181 DEPQE--VSEEARPVGDI----RLAIVGRPNVGKSTFVNALLGEERFVVSDVPGTTRDAI 234 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 K + DTAG+R+ I + +E +V ++M+++ E LLDAT +Q Sbjct: 235 DSLVAHKGRRFVVTDTAGIRRKRSIAQKVESFSVVRAMKAMDQAEVVACLLDATEAGVEQ 294 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQD-LRTKAIKNLPQIGDIYINTISGRTG 361 D R++ V G A+V+ +NKWD ++++ QD R + K LP + + +S + Sbjct: 295 DARLLGLVAEKGKALVIVVNKWD-IAEREGATQDWYRKELTKRLPFVAFAPMLFVSAKER 353 Query: 362 EGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 G+ ++ + + ++ R T LN L+ Q ++P P R +L Y+ Q+ +PP Sbjct: 354 RGVHRVLEKAARLVEQYRARFPTPQLNELLEALQDEHPAPVARGRRVKLYYVAQVAYAPP 413 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 +F+I P+ + + Y+RY+ NR R F L +P+R+ F+ ++ Sbjct: 414 TFVIQANHPDGLTDHYRRYIENRFRDAFGLE-VPMRLVFKERQH 456 >gi|304436527|ref|ZP_07396500.1| ribosome-associated GTPase EngA [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370470|gb|EFM24122.1| ribosome-associated GTPase EngA [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 442 Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 157/466 (33%), Positives = 252/466 (54%), Gaps = 37/466 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTLFN++ KK++++V + PG+TRDR+Y A F I+DT GI + Sbjct: 6 VAVVGRPNVGKSTLFNQIGKKRVSIVDDMPGVTRDRIYLDAEWLNHEFTIIDTGGIEFDE 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + I + M Q ELA+ EA +ILFL+D +AG+T D + LR+ P+I+ NK+D+ Sbjct: 66 SDHILRSMRSQAELAMEEADVILFLVDGRAGLTTSDEEVARLLRRTKKPVILAVNKIDSF 125 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + Y+ YSL + + ISA + + +L + F P P E E ++ Sbjct: 126 EREALIYDFYSLGLGDPIPISASNAMNLGDLLDAVVAAF----PEEPAESQETDE----- 176 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 + IAVVGRPNVGKS+L+NRLLG R++ G TRD++ Sbjct: 177 -------------------IAIAVVGRPNVGKSSLVNRLLGEERVIVSDVPGTTRDAIDT 217 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + DTAGMR+ +IT +E+ +V +S++++ +++++A +QD Sbjct: 218 HFTKDGAKYLLIDTAGMRRKGKITLPVERYSVMRSLRAIDRAGVVLMVINAAEGILEQDT 277 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDK-----LNLLQDLRTKAIKNLPQIGDIYINTISGR 359 +I V +G V++ +NKWD+ +K L DLR K + L +Y + ++G+ Sbjct: 278 KIAGYVHESGKGVIIVVNKWDIFPEKNDKSTLRFTDDLREK-LGFLQYAPVLYTSALTGQ 336 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 E + +L+ V E + RI TS LN ++ NPPPT + ++ ++TQ+ Sbjct: 337 RVERVTELVKYVAEQQSM---RIKTSVLNELIRDAVSVNPPPTKKGKQLKILFVTQVSIV 393 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 PP+F+IF P + SY R++ NRLR +F G PIR+ ++ K Sbjct: 394 PPTFIIFVNDPELMHFSYLRFIENRLRESFGFEGTPIRLVVRARKE 439 >gi|212634303|ref|YP_002310828.1| GTP-binding protein EngA [Shewanella piezotolerans WP3] gi|226741196|sp|B8CKR5|DER_SHEPW RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|212555787|gb|ACJ28241.1| GTP-binding protein EngA [Shewanella piezotolerans WP3] Length = 490 Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 160/473 (33%), Positives = 259/473 (54%), Gaps = 18/473 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A + G F +VDT GI Sbjct: 1 MIPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAHLAGYEFIVVDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG I +M +Q+ AI EA ++LF+ D++AG+T D AI LR + +V+NK Sbjct: 61 -DGTEEGIETRMAEQSLAAIEEADVVLFMTDARAGLTAADLAIAQHLRSREKTTFVVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPL-EMIENNK 179 +D A E +SL E+ +++A G + + +Y P E + K Sbjct: 120 VDGIDADSACAEFWSLGLGEVYQMAAAQGRGVTNM---------IEYSLAPYAEAMGITK 170 Query: 180 RNEESPKENITSEGKSSVKNISK-----PLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQ 234 E E + + K P+++A++G+PNVGKSTL NR+LG R++ + Sbjct: 171 DGEGEESEEEREYTEEEAEAEQKRLQDLPIKLAIIGKPNVGKSTLTNRILGEERVVVYDE 230 Query: 235 SGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLD 294 G TRDS+ I + + DTAG+R+ S++ E++E+ +V K++++V C ++++D Sbjct: 231 PGTTRDSIYIPMEREGREYVLIDTAGVRRRSKVHETVEKFSVIKTLKAVEDCNVVLLIID 290 Query: 295 ATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYIN 354 A +QDL ++ N G A+V+A+NKWD + ++ ++++ + L I I+ Sbjct: 291 AREGIAEQDLGLLGFALNAGRALVIAVNKWDGIDQEVK--DRVKSELDRRLGFIDFARIH 348 Query: 355 TISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYIT 414 IS G G+ L S+ E R++TS L +Q Q + PP + R +LKY Sbjct: 349 FISALHGTGVGHLYESIEEAYDSATRRVSTSMLTRIMQMAQDDHQPPLVNGRRVKLKYAH 408 Query: 415 QIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 +PP ++ K+P+SYKR+++N R + + G PI++ FQ NP+ Sbjct: 409 AGGYNPPIVVVHGNQVKKLPDSYKRFMMNYYRRSLKVIGTPIQIRFQDGGNPF 461 >gi|32034718|ref|ZP_00134849.1| COG1160: Predicted GTPases [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126207887|ref|YP_001053112.1| GTP-binding protein EngA [Actinobacillus pleuropneumoniae L20] gi|307260878|ref|ZP_07542564.1| GTP-binding protein engA [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|166224300|sp|A3MZC1|DER_ACTP2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|126096679|gb|ABN73507.1| GTP-binding protein EngA [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|306869445|gb|EFN01236.1| GTP-binding protein engA [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 506 Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 162/485 (33%), Positives = 263/485 (54%), Gaps = 18/485 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG A I G F ++DT GI Sbjct: 1 MTPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHANIAGYDFIVIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + ++M +Q+ LAI EA ++LFL+D++AG+ P D I +LR++ ++V+NK Sbjct: 61 -DGTEEGVEEKMAEQSLLAIEEADVVLFLVDARAGLVPADIGIAQYLRQREKTTVVVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL-HSVIFKIFKQKYPNHPLEMIE--- 176 D A + E Y L E+ +I+A G ++L V+ + +Q + +E E Sbjct: 120 TDGIDADSHCAEFYQLGLGEVEQIAAAQGRGVTQLIDQVLAPLGEQLNADQAVENEENSA 179 Query: 177 -----------NNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLG 225 + + +++ + E ++ K ++IA+VGRPNVGKSTL NR+LG Sbjct: 180 NEEADEWDTDFDFENEDDTALLDEALEEETEESIEDKNIKIAIVGRPNVGKSTLTNRILG 239 Query: 226 YNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRT 285 R++ G TRDS+ I I DTAG+RK ++ ++E+ +V K++Q+++ Sbjct: 240 EERVVVYDMPGTTRDSIYIPMERDGQQYTIIDTAGVRKRGKVNLAVEKFSVIKTLQAIQD 299 Query: 286 CETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNL 345 ++ +DA QDL ++ + N G ++V+ +NKWD +S ++ ++++ + L Sbjct: 300 ANVVLLTIDAREGISDQDLSLLGFILNAGRSLVIVVNKWDGLSQ--DIKDQVKSELDRRL 357 Query: 346 PQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFN 405 I ++ IS G G+ +L SV E + +TS L L+ ++ PP + Sbjct: 358 DFIDFARVHFISALHGSGVGNLFDSVKEAYACATQKTSTSMLTRILRMAADEHQPPLVNG 417 Query: 406 RYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 R +LKY +PP +I K+ +SYKRYL N R + + G PIR+ FQ N Sbjct: 418 RRVKLKYAHPGGYNPPIIVIHGNQVEKLADSYKRYLSNYFRKSLKIIGSPIRIQFQEGNN 477 Query: 466 PYIKK 470 P+ K Sbjct: 478 PFAGK 482 >gi|303249765|ref|ZP_07335969.1| GTP-binding protein EngA [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307251953|ref|ZP_07533854.1| GTP-binding protein engA [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307256448|ref|ZP_07538230.1| GTP-binding protein engA [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|302651332|gb|EFL81484.1| GTP-binding protein EngA [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306860645|gb|EFM92657.1| GTP-binding protein engA [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306865078|gb|EFM96979.1| GTP-binding protein engA [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 506 Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 162/485 (33%), Positives = 263/485 (54%), Gaps = 18/485 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG A I G F ++DT GI Sbjct: 1 MTPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHANIAGYDFIVIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + ++M +Q+ LAI EA ++LFL+D++AG+ P D I +LR++ ++V+NK Sbjct: 61 -DGTEEGVEEKMAEQSLLAIEEADVVLFLVDARAGLVPADIGIAQYLRQREKTTVVVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL-HSVIFKIFKQKYPNHPLEMIE--- 176 D A + E Y L E+ +I+A G ++L V+ + +Q + +E E Sbjct: 120 TDGIDADSHCAEFYQLGLGEVEQIAAAQGRGVTQLIDQVLAPLGEQLNADQAVENEENSA 179 Query: 177 -----------NNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLG 225 + + +++ + E ++ K ++IA+VGRPNVGKSTL NR+LG Sbjct: 180 NEEADEWDTDFDFENEDDTALLDEALEEETEESIEDKNIKIAIVGRPNVGKSTLTNRILG 239 Query: 226 YNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRT 285 R++ G TRDS+ I I DTAG+RK ++ ++E+ +V K++Q+++ Sbjct: 240 EERVVVYDMPGTTRDSIYIPMERDGQQYTIIDTAGVRKRGKVNLAVEKFSVIKTLQAIQD 299 Query: 286 CETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNL 345 ++ +DA QDL ++ + N G ++V+ +NKWD +S ++ ++++ + L Sbjct: 300 ANVVLLTIDAREGISDQDLSLLGFILNAGRSLVIVVNKWDGLSQ--DIKDQVKSELDRRL 357 Query: 346 PQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFN 405 I ++ IS G G+ +L SV E + +TS L L+ ++ PP + Sbjct: 358 DFIDFARVHFISALHGSGVGNLFDSVKEAYACATQKTSTSMLTRILRMAADEHQPPLVNG 417 Query: 406 RYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 R +LKY +PP +I K+ +SYKRYL N R + + G PIR+ FQ N Sbjct: 418 RRVKLKYAHPGGYNPPIIVIHGNQVEKLADSYKRYLSNYFRKSLKIIGSPIRIQFQEGNN 477 Query: 466 PYIKK 470 P+ K Sbjct: 478 PFAGK 482 >gi|312898938|ref|ZP_07758326.1| ribosome-associated GTPase EngA [Megasphaera micronuciformis F0359] gi|310620100|gb|EFQ03672.1| ribosome-associated GTPase EngA [Megasphaera micronuciformis F0359] Length = 442 Score = 270 bits (691), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 161/467 (34%), Positives = 251/467 (53%), Gaps = 39/467 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI--AD 62 +A+VG PNVGKSTLFN +VKK++++V + PG+TRDR+Y A G F ++DT GI D Sbjct: 6 VAVVGRPNVGKSTLFNAIVKKRISIVEDLPGVTRDRIYFDAEWLGREFTLIDTGGIEFVD 65 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 N +I M Q ELAI+EA +IL+++D K GI P D I + LR P+I+V NK+D Sbjct: 66 SDN-NIFTSMRYQAELAIHEADVILYVVDGKTGIQPQDQEIAAMLRASGKPVILVVNKID 124 Query: 123 TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 + + N YE Y L + + +SA + + +L + K Sbjct: 125 SVEQEVNIYEFYGLGLGDPIGVSAVNLMNLGDLLDEVLSHIK------------------ 166 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 E P E SV + IA+VGRPNVGKS+L N LLG R++ +G TRDS+ Sbjct: 167 EVP----VQEDDESV------VHIALVGRPNVGKSSLTNALLGKERVIVSDMAGTTRDSI 216 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 W + DTAGMR+ +I +E+ +V ++++++ + +++LD +Q Sbjct: 217 DTHWKHDGTEFVLIDTAGMRRKGKIDLPVERYSVVRALRAIDRSDVAVLVLDGVEGVTEQ 276 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSD----KLNLLQDLRTKAIKNLPQIGDIYINTISG 358 D +I + +G ++ +NKWD+V+ L +D+R + + L +Y + ++ Sbjct: 277 DKKIAGYIHESGKGCIIIVNKWDLVTKDSKTSLRYTEDIR-RELAFLQYAPVLYASALTH 335 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 + + L DL+ V E + R++TS LN + QL NPPPT R ++ Y+TQ Sbjct: 336 QRVDRLADLVKYVSEQQHM---RVSTSILNELMADAQLTNPPPTKGGRPLKIYYLTQASV 392 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 +PP+F++F P + SYKRY+ NRLR F G P+R+ + K Sbjct: 393 APPTFVLFVNDPALLHFSYKRYIENRLRETFGFEGTPVRIITRGKKG 439 >gi|219669400|ref|YP_002459835.1| GTP-binding protein EngA [Desulfitobacterium hafniense DCB-2] gi|254783150|sp|B8G2P9|DER_DESHD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|219539660|gb|ACL21399.1| small GTP-binding protein [Desulfitobacterium hafniense DCB-2] Length = 441 Score = 270 bits (691), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 173/461 (37%), Positives = 252/461 (54%), Gaps = 36/461 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA-DG 63 +AIVG PNVGKSTLFNRL +A+V N PG+TRDRLY + G F I+DT GI Sbjct: 6 VAIVGRPNVGKSTLFNRLAGGLVAIVENRPGVTRDRLYRDSEWLGRKFTIIDTGGIEFVN 65 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 +N SI+ QM Q E+AI EA +I+F+ID++ TP D I LR+ P+I+ +NK++ Sbjct: 66 ENTSISAQMRRQAEIAIEEADVIVFVIDAQISPTPDDDMIAQTLRRSGKPVILAANKVEN 125 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 A+ YE Y+L E V ISA H + +L + +H E IE EE Sbjct: 126 -FAKTELYEFYNLGLGEPVPISAVHGMNIGDLLDEVV--------SHFPEDIE-----EE 171 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 + I RIAVVGRPNVGKS+L+N LLG R++ + G TRD++ Sbjct: 172 VDPDTI---------------RIAVVGRPNVGKSSLVNTLLGEERVIVSNIPGTTRDAID 216 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 ++ + I DTAGMR+ RI E EQ +V +S+++V + ++LLDA +QD Sbjct: 217 SAFEHEGKHYIIIDTAGMRRKGRIEELTEQYSVSRSLRAVDRSDVILMLLDAGEGVTEQD 276 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVS--DK-LNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 +I G +VL +NKWD++ DK +N + + + + ++I+ +G+ Sbjct: 277 KKIAGYAHEAGKGIVLVVNKWDLIEKDDKTMNRFEKDIREELGFMQYAPTLFISAKTGQR 336 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 L DL+ V E N TR+ T+ LN+ +++ NPPPT R ++ Y TQ+ P Sbjct: 337 VTKLLDLVDFVAEQN---STRVATATLNTLVREWVHLNPPPTDKGRRLKVLYATQVGVKP 393 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 P+F+ F + SY+RYL N+LR +F G PIRM + Sbjct: 394 PTFVFFVNDHELMHFSYRRYLENQLRSSFGFEGSPIRMIVR 434 >gi|219850590|ref|YP_002465023.1| GTP-binding protein EngA [Chloroflexus aggregans DSM 9485] gi|254783144|sp|B8GAY7|DER_CHLAD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|219544849|gb|ACL26587.1| small GTP-binding protein [Chloroflexus aggregans DSM 9485] Length = 449 Score = 270 bits (691), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 157/467 (33%), Positives = 243/467 (52%), Gaps = 35/467 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST FNRL+ ++ A+V + PG TRDRLYG NG F +VDTAG+ G Sbjct: 6 VAIVGRPNVGKSTFFNRLIGERRAIVEDIPGTTRDRLYGDTFWNGREFTVVDTAGLLFGD 65 Query: 65 ------NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVS 118 IA++ Q E AI EA I+F++D + G+T D + LR P+++ Sbjct: 66 EDPSLPEVEIARRTRVQAEHAIAEADAIIFMVDGRDGLTTADADVADILRTTAKPVVLAV 125 Query: 119 NKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 NK D++ + E Y+L+ + + +SA H LGT ++ + + F K Sbjct: 126 NKCDSQERMLDAVEFYALNLGDPIPMSAFHGLGTGDVLDRLTEYFPPK----------TF 175 Query: 179 KRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 +++EE + LR+A+VGRPNVGKS+L+NRLLG R + G T Sbjct: 176 EKDEE------------------RHLRVAIVGRPNVGKSSLLNRLLGKERSVVSPIPGTT 217 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RD + + + PI + DTAG+R+ +I +E+ +V ++++++ C+ ++L+DAT Sbjct: 218 RDPIDTTITYYGEPITLIDTAGIRRAGKIERGIEKYSVLRTLRAIERCDVAMLLVDATEG 277 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 QD I V ++L +NKWD ++ + + + + I IS Sbjct: 278 VTAQDTHIAGMVIEAKKGLILVVNKWDAITKDSQTYYEFEHRVREAFKFVDYAPIVFISA 337 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTI-FNRYNRLKYITQIQ 417 TG+ + L+ EI + RI TS LN++L++ +Q PP + + RL Y Q Q Sbjct: 338 LTGQRVSHLLDYAREIYAQRQKRIPTSELNNFLREVVVQQPPMAVKKGAHLRLYYAVQPQ 397 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 + PP FL F + SY RYL NRLR + G PI + F+S + Sbjct: 398 TEPPVFLFFANDSELVHWSYARYLENRLRERYGFQGTPIVIVFRSRE 444 >gi|238926984|ref|ZP_04658744.1| GTP-binding protein EngA [Selenomonas flueggei ATCC 43531] gi|238885218|gb|EEQ48856.1| GTP-binding protein EngA [Selenomonas flueggei ATCC 43531] Length = 441 Score = 270 bits (691), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 156/466 (33%), Positives = 253/466 (54%), Gaps = 37/466 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTLFN++ KK++++V + PG+TRDR+Y A F I+DT GI + Sbjct: 6 VAVVGRPNVGKSTLFNQIGKKRVSIVDDMPGVTRDRIYLDAEWLTHEFTIIDTGGIEFDE 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + I + M Q ELA+ EA +ILFL+D ++G+T D + LR+ P+I+ NK+D+ Sbjct: 66 SDHILRSMRSQAELAMEEADVILFLVDGRSGLTTSDEEVARLLRRTKKPVILAVNKIDSF 125 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + Y+ YSL + + ISA + + +L + F P P E+ E ++ Sbjct: 126 EREALIYDFYSLGLGDPIPISASNAMNLGDLLDAVVAAF----PTEPAEVQETDE----- 176 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 + IAVVGRPNVGKS+L+NRLLG R++ G TRD++ Sbjct: 177 -------------------IAIAVVGRPNVGKSSLVNRLLGEERVIVSDVPGTTRDAIDT 217 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + DTAGMR+ +IT +E+ +V +S++++ +++++A +QD Sbjct: 218 HFTKDGAKYLLIDTAGMRRKGKITLPVERYSVMRSLRAIDRAGVVLMVINAAEGILEQDT 277 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDK-----LNLLQDLRTKAIKNLPQIGDIYINTISGR 359 +I V +G V++ +NKWD+ +K L DLR K + L +Y + ++G+ Sbjct: 278 KIAGYVHESGKGVIIVVNKWDIFPEKNDKSTLRFTDDLREK-LGFLQYAPVLYTSALTGQ 336 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 E + +L+ V E + RI TS LN ++ NPPPT + ++ ++TQ+ Sbjct: 337 RVERVTELVKYVAEQQSM---RIKTSVLNELIRDAVSVNPPPTKKGKQLKILFVTQVSIV 393 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 PP+F+IF P + SY R++ NRLR +F G PIR+ ++ K Sbjct: 394 PPTFIIFVNDPELMHFSYLRFIENRLRESFGFEGTPIRLVVRARKE 439 >gi|165975864|ref|YP_001651457.1| GTP-binding protein EngA [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|238687527|sp|B0BTQ8|DER_ACTPJ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|165875965|gb|ABY69013.1| conserved putative GTP-binding protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 506 Score = 270 bits (691), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 162/485 (33%), Positives = 263/485 (54%), Gaps = 18/485 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG A I G F ++DT GI Sbjct: 1 MTPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHANIAGYNFIVIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + ++M +Q+ LAI EA ++LFL+D++AG+ P D I +LR++ ++V+NK Sbjct: 61 -DGTEEGVEEKMAEQSLLAIEEADVVLFLVDARAGLVPADIGIAQYLRQREKTTVVVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL-HSVIFKIFKQKYPNHPLEMIE--- 176 D A + E Y L E+ +I+A G ++L V+ + +Q + +E E Sbjct: 120 TDGIDADSHCAEFYQLGLGEVEQIAAAQGRGVTQLIDQVLAPLGEQLNADQAVENEENSA 179 Query: 177 -----------NNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLG 225 + + +++ + E ++ K ++IA+VGRPNVGKSTL NR+LG Sbjct: 180 NEEADEWDTDFDFENEDDTALLDEALEEETEESIEDKNIKIAIVGRPNVGKSTLTNRILG 239 Query: 226 YNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRT 285 R++ G TRDS+ I I DTAG+RK ++ ++E+ +V K++Q+++ Sbjct: 240 EERVVVYDMPGTTRDSIYIPMERDGQQYTIIDTAGVRKRGKVNLAVEKFSVIKTLQAIQD 299 Query: 286 CETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNL 345 ++ +DA QDL ++ + N G ++V+ +NKWD +S ++ ++++ + L Sbjct: 300 ANVVLLTIDAREGISDQDLSLLGFILNAGRSLVIVVNKWDGLSQ--DIKDQVKSELDRRL 357 Query: 346 PQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFN 405 I ++ IS G G+ +L SV E + +TS L L+ ++ PP + Sbjct: 358 DFIDFARVHFISALHGSGVGNLFDSVKEAYACATQKTSTSMLTRILRMAADEHQPPLVNG 417 Query: 406 RYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 R +LKY +PP +I K+ +SYKRYL N R + + G PIR+ FQ N Sbjct: 418 RRVKLKYAHPGGYNPPIIVIHGNQVEKLADSYKRYLSNYFRKSLKIIGSPIRIQFQEGNN 477 Query: 466 PYIKK 470 P+ K Sbjct: 478 PFAGK 482 >gi|254428914|ref|ZP_05042621.1| GTPase, putative [Alcanivorax sp. DG881] gi|196195083|gb|EDX90042.1| GTPase, putative [Alcanivorax sp. DG881] Length = 469 Score = 270 bits (691), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 156/467 (33%), Positives = 252/467 (53%), Gaps = 30/467 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG + G ++ +VDT GI + Sbjct: 5 IALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGDGQLGGYLYTVVDTGGIGE-N 63 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + I M Q+ A+ EA ++LF++D +AG+T D I S LRK P ++ NK D Sbjct: 64 DDGIDVPMTSQSLQAVGEADVVLFMVDGRAGLTAADEQIASELRKLPKPTYLIVNKTDGV 123 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI-ENNKRNEE 183 A E ++L E++ I+A H G + + I + F LE++ E R + Sbjct: 124 DADSAMSEFFALGLTEVLPIAAAHGRGVTSMIEHILEGFTD------LELLPEGEHRTSK 177 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 P E+ +R+AV+GRPNVGKSTLINR+LG R++ +G TRDS+ Sbjct: 178 KPGED--------------SIRVAVLGRPNVGKSTLINRMLGEERVVVFDHAGTTRDSIE 223 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + + + DTAG+R+ ++ E +E+ +V K++Q++ + +V++DA QD Sbjct: 224 VPFERMGRAYTLIDTAGVRRRGKVFEMVEKFSVIKALQAMEAAQVVVVVIDAREGITDQD 283 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 L ++ ++G A+++A+NKWD + + + + +R + L + I IS G G Sbjct: 284 LHLLGYALDSGRALMIAVNKWDGL--EADHKERVRVNLGRRLEFAPWVKIKFISALHGTG 341 Query: 364 LDDLMVSVLEINKLWKT---RITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 + DL V + W + +I T+ L +++ +PPP +L+Y ++P Sbjct: 342 VGDLWGMV---EQAWDSAFIKIGTNELTRMMEEITNGHPPPRNGRFRAKLRYAHLGGNNP 398 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 P+ ++ +P SYK++L NR R L G PIR+ F+S NPY Sbjct: 399 PTLVLHGNRTEALPASYKKFLENRFRELLKLEGTPIRLEFKSGTNPY 445 >gi|110834717|ref|YP_693576.1| GTP-binding protein [Alcanivorax borkumensis SK2] gi|123149362|sp|Q0VNE4|DER_ALCBS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|110647828|emb|CAL17304.1| GTP-binding protein, putative [Alcanivorax borkumensis SK2] Length = 471 Score = 270 bits (690), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 156/467 (33%), Positives = 252/467 (53%), Gaps = 30/467 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG + G ++ +VDT GI + Sbjct: 7 IALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGDGQLGGYLYTVVDTGGIGE-N 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + I M Q+ A+ EA ++LF++D +AG+T D I S LRK P ++ NK D Sbjct: 66 DDGIDVPMTSQSLQAVGEADVVLFMVDGRAGLTAADEQIASELRKLPKPTYLIVNKTDGV 125 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI-ENNKRNEE 183 A E ++L E++ I+A H G + + I + F LE++ E R + Sbjct: 126 DADSAMSEFFALGLTEVLPIAAAHGRGVTSMIEHILEGFTD------LELLPEGEHRTSK 179 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 P E+ +R+AV+GRPNVGKSTLINR+LG R++ +G TRDS+ Sbjct: 180 KPGED--------------SIRVAVLGRPNVGKSTLINRMLGEERVVVFDHAGTTRDSIE 225 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + + + DTAG+R+ ++ E +E+ +V K++Q++ + +V++DA QD Sbjct: 226 VPFERMGRAYTLIDTAGVRRRGKVFEMVEKFSVIKALQAMEAAQVVVVVIDAREGITDQD 285 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 L ++ ++G A+++A+NKWD + + + + +R + L + I IS G G Sbjct: 286 LHLLGYALDSGRALMIAVNKWDGL--EADHKERVRVNLGRRLEFAPWVKIKFISALHGTG 343 Query: 364 LDDLMVSVLEINKLWKT---RITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 + DL V + W + +I T+ L +++ +PPP +L+Y ++P Sbjct: 344 VGDLWGMV---EQAWDSAFIKIGTNELTRMMEEITNGHPPPRNGRFRAKLRYAHLGGNNP 400 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 P+ ++ +P SYK++L NR R L G PIR+ F+S NPY Sbjct: 401 PTLVLHGNRTEALPTSYKKFLENRFRELLKLEGTPIRLEFKSGTNPY 447 >gi|307543972|ref|YP_003896451.1| GTP-binding protein EngA [Halomonas elongata DSM 2581] gi|307215996|emb|CBV41266.1| GTP-binding protein EngA [Halomonas elongata DSM 2581] Length = 467 Score = 270 bits (690), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 151/463 (32%), Positives = 247/463 (53%), Gaps = 28/463 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG ++ G + ++DT GI+ G Sbjct: 5 IALVGRPNVGKSTLFNRLTRSRDALVADFPGLTRDRKYGNGMLGGKAYTVIDTGGIS-GD 63 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I M +Q+ AI+EA ++LF++D ++G+ D AI + LR +V NK D Sbjct: 64 EEGIDAAMAEQSLQAIDEADIVLFMVDGRSGLNVADEAIANHLRVNQKKTWLVVNKTDGL 123 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + L E I+A H + L + F ++ P+ P + Sbjct: 124 EEHSAMADFWQLGIGEPRSIAAAHGRNVTSLIEEVLDPFPERDPDIPADT---------- 173 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 G S + I V+GRPNVGKSTL+NRLLG +R++ ++G TRD++ I Sbjct: 174 --------GASGI-------HIGVIGRPNVGKSTLVNRLLGEDRVVVFDEAGTTRDAIEI 218 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + P + DTAG+R+ + E E+ ++ K++++++ C +++LDA +QDL Sbjct: 219 PFERRGKPYVLVDTAGVRRRKNVREVAEKFSIIKTLEAIKECHVAVMVLDARSGLVEQDL 278 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 ++D V +G A+VLA+NKWD + + + +R + + L ++ IS G + Sbjct: 279 HLLDYVLTSGRALVLAVNKWDGLEHEAK--EKMRAEIKRRLGFADYAELHFISALHGTAV 336 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 DL S+ + + +T+ L + L+ Q+ PP I R +L+ Q ++PP + Sbjct: 337 GDLYPSIERAFESANSHWSTNRLTNILRDAVEQHQPPMIHGRRIKLRMAHQGGTNPPIIV 396 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 + + +PE+YKRYL N R + G P+R F+S KNPY Sbjct: 397 VHGNQTDSLPEAYKRYLTNTFRKVLKVRGTPMRFEFRSGKNPY 439 >gi|307249625|ref|ZP_07531611.1| GTP-binding protein engA [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306858323|gb|EFM90393.1| GTP-binding protein engA [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 506 Score = 270 bits (690), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 162/485 (33%), Positives = 263/485 (54%), Gaps = 18/485 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG A I G F ++DT GI Sbjct: 1 MTPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHANIAGHDFIVIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + ++M +Q+ LAI EA ++LFL+D++AG+ P D I +LR++ ++V+NK Sbjct: 61 -DGTEEGVEEKMAEQSLLAIEEADVVLFLVDARAGLVPADIGIAQYLRQREKTTVVVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL-HSVIFKIFKQKYPNHPLEMIE--- 176 D A + E Y L E+ +I+A G ++L V+ + +Q + +E E Sbjct: 120 TDGINADSHCAEFYQLGLGEVEQIAAAQGRGVTQLIEQVLAPLGEQLNADQAVENEENSA 179 Query: 177 -----------NNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLG 225 + + +++ + E ++ K ++IA+VGRPNVGKSTL NR+LG Sbjct: 180 NEEADEWDTDFDFENEDDTALLDEALEEETEESIEDKNIKIAIVGRPNVGKSTLTNRILG 239 Query: 226 YNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRT 285 R++ G TRDS+ I I DTAG+RK ++ ++E+ +V K++Q+++ Sbjct: 240 EERVVVYDMPGTTRDSIYIPMERDGQQYTIIDTAGVRKRGKVNLAVEKFSVIKTLQAIQD 299 Query: 286 CETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNL 345 ++ +DA QDL ++ + N G ++V+ +NKWD +S ++ ++++ + L Sbjct: 300 ANVVLLTIDARKGISDQDLSLLGFILNAGRSLVIVVNKWDGLSQ--DIKDQVKSELDRRL 357 Query: 346 PQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFN 405 I ++ IS G G+ +L SV E + +TS L L+ ++ PP + Sbjct: 358 DFIDFARVHFISALHGSGVGNLFDSVKEAYACATQKTSTSMLTRILRMAADEHQPPLVNG 417 Query: 406 RYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 R +LKY +PP +I K+ +SYKRYL N R + + G PIR+ FQ N Sbjct: 418 RRVKLKYAHPGGYNPPIIVIHGNQVEKLADSYKRYLSNYFRKSLKIIGSPIRIQFQEGNN 477 Query: 466 PYIKK 470 P+ K Sbjct: 478 PFAGK 482 >gi|300114862|ref|YP_003761437.1| ribosome-associated GTPase EngA [Nitrosococcus watsonii C-113] gi|299540799|gb|ADJ29116.1| ribosome-associated GTPase EngA [Nitrosococcus watsonii C-113] Length = 464 Score = 270 bits (690), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 163/467 (34%), Positives = 246/467 (52%), Gaps = 29/467 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG A F +VDT GI Sbjct: 1 MKALVALVGRPNVGKSTLFNRLTRSRDALVADQPGVTRDRQYGLAYCGEQSFFVVDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + + I M Q +LAI EA +I FL+D++ G++ D I +LR P+ +V NK Sbjct: 61 ME-QESEIGSLMRGQAQLAIEEADVIFFLVDAREGLSSLDEEIAEWLRCTEKPLKLVINK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + R E Y L E ISA G V+ + P Sbjct: 120 AEGRDEDLVASEFYCLGLGEPAIISARQGQGV----EVLLQALLTLLP------------ 163 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 + +S ++ +K L++AV+GRPNVGKSTL+NR+LG R+L+ G TRD Sbjct: 164 --------VAGREESEIQ--AKGLQLAVIGRPNVGKSTLVNRILGEERVLSSEIPGTTRD 213 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+SI + + DTAG+R+ SRI + +E+ +V +S+QS+ + I+++DA Sbjct: 214 SISIPFRHHGRDYTLVDTAGIRRRSRILDRVEKFSVIQSLQSIAIAQVVILVIDAHDSVV 273 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 +QDL + + +G VV+A+NKWD + L Q ++ + LP + I+ IS Sbjct: 274 EQDLHLAGVILESGKGVVIAVNKWDGLP--LEQRQRVKKDLDRRLPFLVFARIHFISALH 331 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G G+ DL S+ E + +++ T LN L ++PPP + R +L+Y Q +P Sbjct: 332 GSGVGDLFPSIDEAYQSANSQLPTGELNRALLAAVEKHPPPIVKGRRIKLRYAHQGGQNP 391 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 P +I + +Y+RYLIN R F L G PI + F++ KNP+ Sbjct: 392 PKIIIHGNQAEAVSANYRRYLINYFRSVFGLMGTPIALEFRTVKNPF 438 >gi|159900085|ref|YP_001546332.1| GTP-binding protein EngA [Herpetosiphon aurantiacus ATCC 23779] gi|238687093|sp|A9B567|DER_HERA2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|159893124|gb|ABX06204.1| small GTP-binding protein [Herpetosiphon aurantiacus ATCC 23779] Length = 455 Score = 270 bits (689), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 150/468 (32%), Positives = 245/468 (52%), Gaps = 35/468 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFN+L+ ++ A++ + G TRDR YG+ I NG +F IVDTAG+ G Sbjct: 6 VAIVGRPNVGKSTLFNKLIGERRAIIADEAGTTRDRQYGETIWNGRVFTIVDTAGLLVGD 65 Query: 65 N------CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVS 118 + I ++ + Q +LAI+EA +I+F++D + G+ D + + LR+ + P+++ Sbjct: 66 DDPNLPLAEIVRRTHQQAQLAIDEADVIVFMVDVREGLIAADEEVAALLRRSSKPVVLGV 125 Query: 119 NKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 NK DT ++N E Y+L + + +SA H G+ +L I + Sbjct: 126 NKADTEDRRQNAVEFYNLGLGDPIALSAYHGTGSGDLLDEIVRHLPAG------------ 173 Query: 179 KRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 EE +N L+IA+VGRPNVGKS+L+N+L+G R++ + G T Sbjct: 174 --QEEEEDDN--------------SLKIAIVGRPNVGKSSLLNKLVGEERVVVSNIPGTT 217 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RDS+ +K PI + DTAG+R+ I + +E+ +V ++M+++ C ++L+DA Sbjct: 218 RDSIDTKLTYKGIPITLIDTAGIRRRGSIEQGIERYSVLRTMKAIERCHIALILVDAQEG 277 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 QD + V + + +NKWD++ +D +T + I IS Sbjct: 278 PTAQDTHVAGMVLEANKGLAIIVNKWDLIDKAKFSYEDAKTTMSQVFHFAPYAPIEFISA 337 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIF-NRYNRLKYITQIQ 417 +TG+ ++ I R++TS +N+ L+ ++PP + + RL Y TQ Q Sbjct: 338 KTGQRATKVLDIAQTIQSERNKRVSTSDINNLLRAAVREHPPTAMHKGAHLRLFYATQAQ 397 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 PP FL F P ++ YKRYL NR+R + G PI + F+ + Sbjct: 398 VEPPVFLFFSNAPEQVHFGYKRYLENRIREQYGFIGTPIILVFKGREE 445 >gi|332652769|ref|ZP_08418514.1| ribosome-associated GTPase EngA [Ruminococcaceae bacterium D16] gi|332517915|gb|EGJ47518.1| ribosome-associated GTPase EngA [Ruminococcaceae bacterium D16] Length = 441 Score = 270 bits (689), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 151/463 (32%), Positives = 245/463 (52%), Gaps = 31/463 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKS LFN+L +++++V + PG+TRDRLY Q F+IVDT GI G Sbjct: 5 VAIVGRPNVGKSMLFNKLCGQRLSIVEDTPGVTRDRLYAQCEWRNRTFDIVDTGGIEPGT 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + I M +Q E+AI+ A +I+F+ D K G+T D + + L + P+++ NK D + Sbjct: 65 DDQILSFMREQAEIAISTATVIVFVCDVKTGMTASDQEVANMLLRSGKPVVLAVNKAD-Q 123 Query: 125 IAQRN--FYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 + + N YE Y+L + + +SA H GT +L F+ F Sbjct: 124 VGRENPDVYEFYNLGLGDPIAVSAVHGHGTGDLLDACFEYF------------------- 164 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 P ++ E ++K +A++G+PNVGKS+L+NR+LG R++ + +G TRD+V Sbjct: 165 --PPDDEEEEDDDTIK-------VAIIGKPNVGKSSLVNRILGQERVIVSNMAGTTRDAV 215 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + + DTAGMRK S++ + +E+ +V ++ ++ + ++L+DA +Q Sbjct: 216 DSVFENEKGKFLFIDTAGMRKKSKVDDRIEKFSVLRATMAIERSDVCLILIDAQEGVTEQ 275 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D ++ G A ++ +NKWD + + +R +++L + I IS TG+ Sbjct: 276 DTKVAGLAHEAGKACIIVVNKWDAIEKDGKTMDKMRKDVMRDLSYMTYAPIIFISALTGQ 335 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 +D L + +N RITT LNS L + PPT R ++ Y+TQI PP Sbjct: 336 RVDRLFDLITYVNNQSAMRITTGMLNSVLADATARVQPPTDKGRRLKIYYMTQIGIKPPH 395 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 F+ FC SY+RYL N++R F L G PIR+ + ++ Sbjct: 396 FVCFCNDARLFHFSYQRYLENQIRATFGLEGTPIRLTIRQKED 438 >gi|284040067|ref|YP_003389997.1| ribosome-associated GTPase EngA [Spirosoma linguale DSM 74] gi|283819360|gb|ADB41198.1| ribosome-associated GTPase EngA [Spirosoma linguale DSM 74] Length = 435 Score = 270 bits (689), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 149/461 (32%), Positives = 243/461 (52%), Gaps = 28/461 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +AIVG PNVGKSTLFNRL +++ A++ N G+TRDR YG A N F ++DT G Sbjct: 1 MANIVAIVGRPNVGKSTLFNRLTEQRQAIMDNQSGVTRDRHYGTAEWNDKYFTVIDTGGY 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 G + + +Q E+AI E+ L+LF++D++ GIT D LR+ P+ +V+NK Sbjct: 61 VVGSEDVFEESIREQVEMAIQESTLLLFVVDTQTGITGLDEDFADVLRRSKKPVYVVANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +T E Y+L + IS++ GT +L + K F+ Sbjct: 121 AETAERAHTAAEFYALGLGDPYPISSQTGTGTGDLLDEVVKHFQTP-------------- 166 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 E P I RIA++GRPNVGKS+ +N L G R + + +G TRD Sbjct: 167 GIEDPDAGIP--------------RIAILGRPNVGKSSFLNVLTGQERSIVTNIAGTTRD 212 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 +++ + + DTAG+R+ +R+ ++E +V +S++++ + I+LLDAT E Sbjct: 213 AINTRYKAYGKDFILTDTAGIRRKARVDSNIEFYSVLRSIKAMEDSDVCIILLDATRGLE 272 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 QDL I+ VV+ +NKWD + +R + I+ + I + I S Sbjct: 273 AQDLNIIGQAIKAKKGVVIMVNKWDAIEKDHRTADVMRKEMIQRMMPIDYVPIIFASVHE 332 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 + + +M +E+ + +I TS LN +Q + PPP++ ++ ++KY+ Q+ + Sbjct: 333 KQRIFQVMEKAMEVYENKTKKIATSKLNEAMQAEIEKYPPPSLKGKFVKIKYMVQVPTPS 392 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 P+F+ FC P + ESY+R+L NRLR +F +G+PI + F+ Sbjct: 393 PTFIFFCNLPQYVQESYQRFLENRLRDHFDFTGVPITVFFR 433 >gi|302391816|ref|YP_003827636.1| ribosome-associated GTPase EngA [Acetohalobium arabaticum DSM 5501] gi|302203893|gb|ADL12571.1| ribosome-associated GTPase EngA [Acetohalobium arabaticum DSM 5501] Length = 438 Score = 270 bits (689), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 152/461 (32%), Positives = 256/461 (55%), Gaps = 29/461 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNR+V ++++V + P ITRDRLYG+ F +VDT G+ Sbjct: 6 VAIVGRPNVGKSTLFNRIVGNRISIVEDEPSITRDRLYGEGEWLDNHFLVVDTGGLDLDS 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + ++ Q ELAI EA ++LF++D + GI P D + + LR+ N PII+ NK+D++ Sbjct: 66 EAELKDEVRQQAELAIEEAEVVLFVVDGRTGIKPMDREVANLLRRSNKPIILTVNKVDSK 125 Query: 125 -IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + ++ Y+ Y L E V ISA+H L T +L + F + E + +E+ Sbjct: 126 ELEEKVKYDFYELGLGEPVAISAKHALNTGDLLDEVISHFSTE---------ETGEYDED 176 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 + +RI+V+GRPNVGKS+L+N +LG R++ G TRD++ Sbjct: 177 T-------------------IRISVIGRPNVGKSSLVNSILGKERVIVNDVPGTTRDAID 217 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + ++ I DTAGMRK S++ +E+ +V +S+++V + +++LDAT +QD Sbjct: 218 TYFEVGDNQFVIIDTAGMRKRSKVEAGIEKYSVIRSLKAVDRSDVALMVLDATQGITQQD 277 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 +I + G A+V+A+NKWD++ + N+ Q + I I +S TG+ Sbjct: 278 KKIAGYAHDQGKAMVIAVNKWDLIKKETNIDQRYADEIRYEASFINYAPITFVSALTGQR 337 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 + +++ V + + RI T+ LN+ +++ ++ PP+ R ++ Y TQ + PP Sbjct: 338 VLEILDIVEYAAEQYSRRIKTNVLNNVIKEAISKHQPPSQKGRRLKVYYATQPRVKPPLI 397 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 ++F P + +SYKRYL N +R +F G P+++ ++ K Sbjct: 398 ILFVNDPTLLRQSYKRYLKNSIRKSFGFDGTPLKIIARNRK 438 >gi|317490873|ref|ZP_07949309.1| ribosome-associated GTPase EngA [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920420|gb|EFV41743.1| ribosome-associated GTPase EngA [Enterobacteriaceae bacterium 9_2_54FAA] Length = 495 Score = 270 bits (689), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 163/479 (34%), Positives = 261/479 (54%), Gaps = 16/479 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI +A+VG PNVGKSTLFNRL + A+V + PG+TRDR YG+A ++G F I+DT GI Sbjct: 1 MIPVVALVGRPNVGKSTLFNRLTHTRDALVADFPGLTRDRKYGRAEVSGHEFIIIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + M +Q+ +AI EA ++LF++D++AG+ P D I LR + +V+NK Sbjct: 61 -DGTENGVETHMAEQSLMAIEEADIVLFMVDARAGLMPADEGIAQHLRSREKATFLVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL--HSVIFKIFKQKYPNHPLEMIENN 178 D + YSL F E+ I+A H G ++L ++I + + E N Sbjct: 120 TDGIDPDVAIGDFYSLGFGEVYPIAASHGRGVAQLIEEALIPFVGVPEPERELTEEEANA 179 Query: 179 KRNEESPKENITSEGKSSVKNISK---PLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQS 235 E + + + + P++IA+VGRPNVGKSTL NR+LG +R++ Sbjct: 180 AYWAEQEADEAEELAEEEEDDFNPQDLPIKIAIVGRPNVGKSTLTNRILGEDRVVVYDMP 239 Query: 236 GITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDA 295 G TRDS+ I + DTAG+RK ++T+++E+ +V K++Q++ ++++DA Sbjct: 240 GTTRDSIYIPMVRDEREYVLIDTAGVRKRGKVTDTVEKFSVIKTLQAIEDSNVALLVIDA 299 Query: 296 TIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLP-QIGDI--- 351 QDL ++ + N+G ++V+ +NKWD +S +D++T+ + L ++G + Sbjct: 300 REGISDQDLSLLGFILNSGRSLVIVVNKWDGLS------EDVKTQVKEMLDLRLGFVDFA 353 Query: 352 YINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLK 411 I+ IS G G+ +L S+ E R++TS L + Q + PP + R +LK Sbjct: 354 RIHFISALHGSGVGNLFESIQEAYDCATRRVSTSLLTRIMNMAQEDHQPPLVRGRRVKLK 413 Query: 412 YITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 Y +PP +I + +SYKRYL+N R + + G PIR+ F+ NPY K Sbjct: 414 YAHAGGYNPPIVVIHGNQVKDLADSYKRYLMNYFRRSLKVMGTPIRIQFKEGDNPYAGK 472 >gi|34498989|ref|NP_903204.1| GTP-binding protein EngA [Chromobacterium violaceum ATCC 12472] gi|41017007|sp|Q7NS92|DER_CHRVO RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|34104839|gb|AAQ61196.1| probable GTP-binding protein [Chromobacterium violaceum ATCC 12472] Length = 469 Score = 270 bits (689), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 163/471 (34%), Positives = 254/471 (53%), Gaps = 39/471 (8%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M T+A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YGQ + + +VDT G Sbjct: 1 MKPTVALVGRPNVGKSTLFNRLTRSRDALVADQPGLTRDRHYGQGRVGEKPYLVVDTGGF 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + I +M QT A++EA ++FL+D +AG+TP D I + LR+ + P+ + NK Sbjct: 61 EPVVDEGILFEMAKQTLQAVDEADAVVFLVDGRAGLTPQDKIIANRLRQLDRPVFLAVNK 120 Query: 121 ---MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 M IA F+E L E + ISA H G EL ++ + F P E+ E Sbjct: 121 AEGMKHAIAGAEFHE---LALGEPLVISAAHGDGVRELMELVLEGF-------PDEVEEE 170 Query: 178 NKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGI 237 + R+ PK AV+GRPNVGKSTL+N +LG R++ Q+G Sbjct: 171 DSRH---PK-------------------FAVIGRPNVGKSTLVNAILGEERVIAFDQAGT 208 Query: 238 TRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATI 297 TRDS+ I + + H I DTAG+R+ +++ E LE+ +V K+M+++ +++LDA + Sbjct: 209 TRDSIYIDFEREGHTYTIIDTAGVRRRAKVNEMLEKFSVIKTMKAIEDANVAVLVLDAQL 268 Query: 298 PFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTIS 357 +QD I G A+V+A+NKWD + + +++R + + L + + IS Sbjct: 269 DISEQDATIAGFALEAGRALVVAVNKWDNLDGEQK--ENVRREIARKLNFLDFAKFHYIS 326 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQ-KTQLQNPPPTIFNRYNRLKYITQI 416 G G+ DL S+ E + +++ T L LQ + Q PP + R +++Y Q Sbjct: 327 AIEGRGVADLFKSIDEAYRAAMSKLATPKLTRVLQVALERQQPPRSGLIR-PKMRYAHQG 385 Query: 417 QSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 +PP ++ + IP SY RYL + R F L G P+R+ ++SS+NP+ Sbjct: 386 GQNPPVIVVHGNALDSIPASYTRYLEHTFRKVFKLQGTPLRVQYKSSENPF 436 >gi|190149696|ref|YP_001968221.1| GTP-binding protein EngA [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307263004|ref|ZP_07544626.1| GTP-binding protein engA [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|238692380|sp|B3H0R7|DER_ACTP7 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|189914827|gb|ACE61079.1| GTP-binding protein EngA [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306871630|gb|EFN03352.1| GTP-binding protein engA [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 506 Score = 270 bits (689), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 162/485 (33%), Positives = 263/485 (54%), Gaps = 18/485 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG A I G F ++DT GI Sbjct: 1 MTPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHANIAGYDFIVIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + ++M +Q+ LAI EA ++LFL+D++AG+ P D I +LR++ ++V+NK Sbjct: 61 -DGTEEGVEEKMAEQSLLAIEEADVVLFLVDARAGLVPADIGIAQYLRQREKTTVVVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL-HSVIFKIFKQKYPNHPLEMIE--- 176 D A + E Y L E+ +I+A G ++L V+ + +Q + +E E Sbjct: 120 TDGIDADSHCAEFYQLGLGEVEQIAAAQGRGVTQLIDQVLAPLGEQLNADQAVENEENSA 179 Query: 177 -----------NNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLG 225 + + +++ + E ++ K ++IA+VGRPNVGKSTL NR+LG Sbjct: 180 NEEADEWDTDFDFENEDDTALLDEALEEETEESIEDKNIKIAIVGRPNVGKSTLTNRILG 239 Query: 226 YNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRT 285 R++ G TRDS+ I I DTAG+RK ++ ++E+ +V K++Q+++ Sbjct: 240 EERVVVYDMPGTTRDSIYIPMERDGQQYTIIDTAGVRKRGKVNLAVEKFSVIKTLQAIQD 299 Query: 286 CETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNL 345 ++ +DA QDL ++ + N G ++V+ +NKWD +S ++ ++++ + L Sbjct: 300 ANVVLLTIDAREGISDQDLSLLGFILNAGRSLVIVVNKWDGLSQ--DIKDQVKSELDRRL 357 Query: 346 PQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFN 405 I ++ IS G G+ +L SV E + +TS L L+ ++ PP + Sbjct: 358 DFIDFARVHFISALHGSGVGNLFDSVKEAYACATQKNSTSMLTRILRMAADEHQPPLVNG 417 Query: 406 RYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 R +LKY +PP +I K+ +SYKRYL N R + + G PIR+ FQ N Sbjct: 418 RRVKLKYAHPGGYNPPIIVIHGNQVEKLADSYKRYLSNYFRKSLKIIGSPIRIQFQEGNN 477 Query: 466 PYIKK 470 P+ K Sbjct: 478 PFAGK 482 >gi|312128144|ref|YP_003993018.1| ribosome-associated gtpase enga [Caldicellulosiruptor hydrothermalis 108] gi|311778163|gb|ADQ07649.1| ribosome-associated GTPase EngA [Caldicellulosiruptor hydrothermalis 108] Length = 440 Score = 270 bits (689), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 147/453 (32%), Positives = 243/453 (53%), Gaps = 28/453 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AIVG PNVGKSTLFNRL+ ++ A+V + PGITRDR+ G+ G+ FN++DT GI Sbjct: 4 TVAIVGRPNVGKSTLFNRLIGERRAIVDDTPGITRDRIIGETEWRGITFNVIDTGGIEPY 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 I KQM Q + AI+ + +I+F++D K G+T D + + LR PI++ NK+D Sbjct: 64 SEDIILKQMRRQAQFAIDMSDVIIFMVDGKTGLTDADREVANMLRTSKKPIVLAVNKIDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 Q YE Y L + + +SAEH G ++ + N N+E Sbjct: 124 ISQQAMIYEFYELGLSDPIAMSAEHGTGVGDVLDAVV-----------------NYLNKE 166 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 E EG +++A++G+PN GKS+L+N +LG R++ G TRD++ Sbjct: 167 GINE--IEEG---------TIKVAIIGKPNTGKSSLVNYILGEERVIVSDIPGTTRDAID 215 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 ++ ++ PI + DTAG+R+ S+I +++E+ ++ +++Q++ + I+LLD T +QD Sbjct: 216 STFEFEGIPITLIDTAGLRRKSKIYDNVERYSMLRTLQAIERSDICIILLDGTENVSEQD 275 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 ++ + G ++A+NKWD V + + + + L + + IS +TG Sbjct: 276 AKVAGYAYEAGKGCIVAVNKWDAVEKDEKTADEYKKQIEEKLSFLKFAPVLFISAKTGFR 335 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 + L+ +VL + + RITT LN L + PP+ + ++ Y+TQ+ PP Sbjct: 336 VKKLLETVLYVYGNYTRRITTGQLNDVLAEATTIYQPPSDKGKQLKIYYMTQVGEKPPKI 395 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 IF + SY+RY+ N LR F +G+PI Sbjct: 396 AIFVNSKDLFHFSYQRYIENYLRKTFDFTGVPI 428 >gi|118443488|ref|YP_878327.1| GTP-binding protein EngA [Clostridium novyi NT] gi|166224330|sp|A0Q125|DER_CLONN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|118133944|gb|ABK60988.1| GTP-binding protein engA [Clostridium novyi NT] Length = 438 Score = 269 bits (688), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 161/464 (34%), Positives = 249/464 (53%), Gaps = 36/464 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFN+L K++A+V + PG+TRDR+Y +A F I+DT GI Sbjct: 6 VAIVGRPNVGKSTLFNKLAGKRIAIVDDMPGVTRDRIYAEAEWLNNNFTIIDTGGIEPEN 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + I QM Q +LAI A ++LF++D K G+T D + LRK + I++ NK+D R Sbjct: 66 DDIIVAQMRRQAQLAIEMADVVLFIVDGKQGLTDADREVAHMLRKASKSIVLAVNKIDRR 125 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 N YE Y+L + + ISA LG +L + + F Sbjct: 126 QLDDNIYEFYNLGLGDPMPISASQGLGLGDLLDEVIEKF--------------------- 164 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P+ N+ E + RIA++GRPNVGKS+LIN++LG + + + G TRD+V Sbjct: 165 PEGNVEEEEDEYI-------RIAMIGRPNVGKSSLINKILGEEKHIVSNIPGTTRDAVDS 217 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + DTAG+R+ S+I E +E+ + +++ S+ + I+++DAT +QD Sbjct: 218 YVETEEGKFVLIDTAGLRRKSKIKEQVERYSAVRTLASIENADVCILMIDATEDIAEQDE 277 Query: 305 RIVDSVFNTGHAVVLALNKWDMVS--DKL--NLLQDLRTKAIKNLPQIGDIYINTISGRT 360 RI+ A+++ +NKWD++ DK N LRTK + LP ++ IS +T Sbjct: 278 RIIGYAHEINKAILVIVNKWDLIEKDDKTMKNFKDKLRTK-LSFLPYASFLF---ISAKT 333 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G+ + ++ E + RI T LN + K L PP + R ++ Y+TQI + P Sbjct: 334 GQRVHKVLGMAKECYGNYCKRIKTGILNDIINKAVLMKEPPVMGTRRLKIYYVTQIGTKP 393 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 P+F+ F P + SY+RYL N+LR +F SG I++ F+ K Sbjct: 394 PTFVFFVNDPELLHFSYRRYLENKLRESFDFSGTGIKLEFRERK 437 >gi|224370723|ref|YP_002604887.1| GTP-binding protein EngA [Desulfobacterium autotrophicum HRM2] gi|259645871|sp|C0QA05|DER_DESAH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|223693440|gb|ACN16723.1| EngA2 [Desulfobacterium autotrophicum HRM2] Length = 492 Score = 269 bits (688), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 150/465 (32%), Positives = 248/465 (53%), Gaps = 28/465 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 +A+VG PNVGKSTLFNR+ + + A+V + PG+TRDR Y A+ N F +VDT G Sbjct: 4 VVALVGRPNVGKSTLFNRITRSRNALVDDFPGVTRDRHYVDAVWNERPFTLVDTGGFLLS 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + A+++ ELAI +A ++ ++D +AGI+P+D + LR+ + P+ + NK++ Sbjct: 64 DDDFFAREIRGHVELAIEDADIVALVLDGRAGISPFDRDLADILRRTSKPVFFLVNKVEN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + E YSL ++ +SAEH +G + +F P ++E +E+ Sbjct: 124 HKQREELLEFYSLGIEKFYPMSAEHGIGVEPFLDDMVALFPAPEP-----VVEPQAGSEQ 178 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 E +S + I IAV GRPNVGKS+LINRL G +R++ G TRDSV Sbjct: 179 -------GEPDASEQEIC----IAVAGRPNVGKSSLINRLFGKSRVVVSHVPGTTRDSVD 227 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 +S + DTAG+R+ ++ E +E+ ++ KS++S+ C+ ++L+DA QD Sbjct: 228 LSIERNGRRFRLIDTAGIRRKGKVRERIEKYSILKSLKSLDQCDVALILIDADEGVTDQD 287 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVS----DKLNLLQDLRTKA--IKNLPQIGDIYINTIS 357 + I + G + +NKWD++ D+ ++DLRTK+ + P + TIS Sbjct: 288 ITIAGYAQDRGCGALFLINKWDLLDEDRKDQRRFMEDLRTKSKFLSFAPAM------TIS 341 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 TG ++ V +I+ + RI T LN ++ ++ PP + + Y TQ+ Sbjct: 342 ALTGFRTHKILAMVEKIHAQYAYRINTGLLNRIVEDAIFRSEPPMHKGKRLKFFYATQVA 401 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 PP+ + F +P+ + SY RYL+N++R L PIR+ F++ Sbjct: 402 VKPPTIVCFVNYPDAVHFSYHRYLVNQIREMAELEHTPIRLLFRA 446 >gi|261406031|ref|YP_003242272.1| GTP-binding protein EngA [Paenibacillus sp. Y412MC10] gi|329929734|ref|ZP_08283410.1| ribosome biogenesis GTPase Der [Paenibacillus sp. HGF5] gi|261282494|gb|ACX64465.1| ribosome-associated GTPase EngA [Paenibacillus sp. Y412MC10] gi|328935712|gb|EGG32173.1| ribosome biogenesis GTPase Der [Paenibacillus sp. HGF5] Length = 440 Score = 269 bits (688), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 151/455 (33%), Positives = 233/455 (51%), Gaps = 28/455 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 +AIVG PNVGKST+FNRL+ ++A+V + PGITRDR+YG A NG F+++DT GI Sbjct: 5 VVAIVGRPNVGKSTIFNRLIGDRLAIVEDKPGITRDRIYGSAEWNGKAFSVIDTGGIEID 64 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + I K + Q ELAI EA +I+F+ D+K G+T D + L + P+I+ NK+D Sbjct: 65 GDDMILKSIRMQAELAIEEADVIVFMCDAKTGVTQSDEEVAQILFRSGKPVILSVNKVDN 124 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + YE YSL F + V IS H G +L V+ + N P Sbjct: 125 LKRADDIYEFYSLGFGDPVGISGSHGTGIGDLLDVVVE-------NLPE----------- 166 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 + +R+A++GRPNVGKS+L+N +LG R++ +G TRD++ Sbjct: 167 ----------LEDDEYDEDVIRVALIGRPNVGKSSLVNAILGEERVIVSDVAGTTRDAID 216 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + + DTAGMRK ++ E+ E+ +V ++M+++ + +VL++ +QD Sbjct: 217 TPFEKDGQRYVLIDTAGMRKRGKVYETTEKYSVMRAMRAIERADVVLVLINGEEGIIEQD 276 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 I + G A + +NKWDMV +Q K + + + +S +T + Sbjct: 277 KHIAGYAYEAGKASLFVVNKWDMVEKDDKTMQQFEKKIRDHFLFMTYAPVVFLSAKTKQR 336 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 L L+ V + R+ T LN + NPPPT R R+ Y TQ+ PP+ Sbjct: 337 LQKLLPVVKHVADQHSLRVQTHLLNDVISDAIAINPPPTDKGRRLRINYSTQVAVKPPTM 396 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 ++F P + SY+RYL N++R F G PIR+ Sbjct: 397 VVFVNDPELMHFSYERYLENKIRAAFDFEGTPIRI 431 >gi|313123537|ref|YP_004033796.1| GTP-binding protein enga [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280100|gb|ADQ60819.1| GTP-binding protein engA [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|325684298|gb|EGD26471.1| ribosome-associated GTPase EngA [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 435 Score = 269 bits (688), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 145/460 (31%), Positives = 251/460 (54%), Gaps = 30/460 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNR++ +++A+V + PG+TRDR Y +A G F+I+DT GI + Sbjct: 6 VAIVGRPNVGKSTLFNRIINERVAIVEDRPGVTRDRNYARASWMGHQFSIIDTGGIT-WE 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +I +++ Q E+AI EA +I+ L D+ G+T D I L + + P+++ NK D Sbjct: 65 DSTIDEEIRAQAEIAIEEADVIVMLADASQGVTSLDERIAHLLYRADKPVLLAVNKADNP 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + Y+ YSL + + +S H G +L E+++N + E Sbjct: 125 EQRTDIYDFYSLGLGDPIPVSGSHGTGIGDLLD---------------EVVKNFPADAEK 169 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 +E + S +V+GRPNVGKS+++NRLLG R++ ++ G TRD++ Sbjct: 170 TEEGVIS--------------FSVIGRPNVGKSSIVNRLLGEERVIVANEEGTTRDAIDT 215 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + DTAG+R+ ++ E E+ +V ++M ++ + I++LDA+ +QD Sbjct: 216 PFVKDGTKFRVVDTAGIRRRGKVYEKTEKYSVMRAMSAMERSDVAILVLDASTGIREQDK 275 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 + G +++A+NKWD+ + +D + + I +S +TG+ + Sbjct: 276 HVAGYAHEAGLGMIIAVNKWDLPKKDSSSGKDFEAVIREEFSYLDYAPIVFVSAKTGKNI 335 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 D L V E+ + RI +S LN L + P P + + R+ Y+TQ++++PP+F+ Sbjct: 336 DQLPKMVKEVYENKNQRIQSSVLNDLLLEASRLVPAPMVKGKRLRVYYMTQVKTNPPTFV 395 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 +FC P + SY+R+LIN+LR NF +G PI++ + K Sbjct: 396 VFCNDPELMHFSYQRFLINQLRENFDFTGTPIKILPRKRK 435 Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 46/181 (25%), Positives = 90/181 (49%), Gaps = 21/181 (11%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI- 60 + + +++G PNVGKS++ NRL+ ++ +V N G TRD + + +G F +VDTAGI Sbjct: 174 VISFSVIGRPNVGKSSIVNRLLGEERVIVANEEGTTRDAIDTPFVKDGTKFRVVDTAGIR 233 Query: 61 ------ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPI 114 + S+ + M+ A+ + + + ++D+ GI D + + + + + Sbjct: 234 RRGKVYEKTEKYSVMRAMS-----AMERSDVAILVLDASTGIREQDKHVAGYAHEAGLGM 288 Query: 115 IIVSNKMD----TRIAQRNF-----YEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQ 165 II NK D + ++F E LD+ IV +SA+ +L ++ ++++ Sbjct: 289 IIAVNKWDLPKKDSSSGKDFEAVIREEFSYLDYAPIVFVSAKTGKNIDQLPKMVKEVYEN 348 Query: 166 K 166 K Sbjct: 349 K 349 >gi|86142085|ref|ZP_01060609.1| GTP-binding protein EngA [Leeuwenhoekiella blandensis MED217] gi|85831648|gb|EAQ50104.1| GTP-binding protein EngA [Leeuwenhoekiella blandensis MED217] Length = 433 Score = 269 bits (688), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 144/457 (31%), Positives = 245/457 (53%), Gaps = 29/457 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST FNRL++++ A+V + G+TRDR YG+ NG F+++DT G G Sbjct: 4 VAIVGRPNVGKSTFFNRLIQRREAIVDSVSGVTRDRHYGKTDWNGKEFSVIDTGGYVRGS 63 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +Q++ Q ELAI+EA I+F++D +AG+T D + + LR+++ P+ +V NK+D Sbjct: 64 DDIFEEQIDKQVELAIDEADAIIFMVDVEAGVTGMDEDVATLLRRQSKPVFLVVNKVDNA 123 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + Q + E Y+L E I++ GT +L + ++ +K Sbjct: 124 MRQDDAVEFYNLGLGEYYTIASISGSGTGDLLDAVVEVLPEK------------------ 165 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 E +S + R AVVGRPN GKS+ IN L+G +R + +G TRD++ Sbjct: 166 -----VEEEESVLP------RFAVVGRPNAGKSSFINALIGEDRYIVTDIAGTTRDAIDT 214 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 +N + DTAG+R+ S++ E LE +V +S++++ C+ ++++DAT F+ Q Sbjct: 215 KYNRFGFEFNLVDTAGIRRKSKVKEDLEFYSVMRSVRAIEHCDVCLLVVDATRGFDGQVQ 274 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 I +V+ +NKWD+V + +++ + D+ I IS T + + Sbjct: 275 NIFWLAERNRKGIVILINKWDLVEKENKTIREFEKHIRAQIEPFTDVPIVFISALTKQRV 334 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 + + +++ + TRI TS LN ++ PPP +Y ++KY Q+ + P F Sbjct: 335 YKAIETAVKVYESRSTRIKTSVLNDYMLPIIEATPPPATKGKYIKIKYCMQLPTPHPQFA 394 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 FC P + + Y+R++ N+LR F G+PI + F+ Sbjct: 395 FFCNLPQYVKDPYRRFVENKLREEFDFEGVPIAVYFR 431 >gi|77164340|ref|YP_342865.1| small GTP-binding protein domain-containing protein [Nitrosococcus oceani ATCC 19707] gi|254434862|ref|ZP_05048370.1| GTPase, putative [Nitrosococcus oceani AFC27] gi|123757906|sp|Q3JCW1|DER_NITOC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|76882654|gb|ABA57335.1| Small GTP-binding domain protein [Nitrosococcus oceani ATCC 19707] gi|207091195|gb|EDZ68466.1| GTPase, putative [Nitrosococcus oceani AFC27] Length = 464 Score = 269 bits (688), Expect = 7e-70, Method: Compositional matrix adjust. Identities = 163/463 (35%), Positives = 246/463 (53%), Gaps = 29/463 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG A F +VDT G+ + + Sbjct: 5 VALVGRPNVGKSTLFNRLTRSRDALVVDQPGVTRDRKYGLAHYGEQSFFVVDTGGVME-Q 63 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I + M Q +LAI EA +I FL+D + G++ D I ++LR P+ +V NK + R Sbjct: 64 ESGIGRLMRAQAQLAIEEADVIFFLVDGREGLSSLDEEIAAWLRCAQKPLKLVINKAEGR 123 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 E Y L E + ISA+ G ++ + P+ EES Sbjct: 124 DGDLVASEFYRLGLGEPIIISAQQGQGVG-------RLLEALLTLLPV------LEREES 170 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 + +K L+ AV+GRPNVGKSTL+NR+LG R+L+ G TRDS+SI Sbjct: 171 EIQ-------------AKGLQFAVIGRPNVGKSTLVNRILGEERVLSSEIPGTTRDSISI 217 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + DTAG+R+ SRI + +E+ +V +S+QS+ + I+++DA +QDL Sbjct: 218 PFRHHGKDYTLVDTAGIRRRSRILDKVEKFSVIQSLQSIAIAQVVILVIDAHDSVVEQDL 277 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 + + +G VV+A+NKWD + L Q ++T + LP + I+ IS G G+ Sbjct: 278 HLAGVILESGKGVVIAVNKWDGLP--LEQRQRVKTDLDRRLPFLVFARIHFISALHGSGV 335 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 DL S+ E + + + T LN L + PPP + R +L+Y Q +PP + Sbjct: 336 GDLFPSIDEAYQSANSHLPTGELNRALLAAVEKYPPPVVKGRRIKLRYAHQGGQNPPKII 395 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 I + +Y+RYLIN R F L G PI + F++ KNP+ Sbjct: 396 IHGNQAEAVSANYRRYLINYFRNAFGLMGTPIALEFRTVKNPF 438 >gi|302871345|ref|YP_003839981.1| ribosome-associated GTPase EngA [Caldicellulosiruptor obsidiansis OB47] gi|302574204|gb|ADL41995.1| ribosome-associated GTPase EngA [Caldicellulosiruptor obsidiansis OB47] Length = 440 Score = 269 bits (688), Expect = 7e-70, Method: Compositional matrix adjust. Identities = 145/453 (32%), Positives = 243/453 (53%), Gaps = 28/453 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AIVG PNVGKSTLFNRL+ ++ A+V + PGITRDR+ G+A G+ FN++DT GI Sbjct: 4 TVAIVGRPNVGKSTLFNRLIGERRAIVDDTPGITRDRIIGEAEWRGITFNVIDTGGIEPY 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 I KQM Q + AI+ + +I+F++D K G+T D + + LR PI++ NK+D Sbjct: 64 SEDIILKQMRRQAQFAIDMSDVIIFIVDGKTGLTDADKEVANMLRTSKKPIVLAVNKIDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + YE Y L + + +SAEH G ++ + N + IE N Sbjct: 124 ISQEPMIYEFYELGLSDPIAMSAEHGTGVGDVLDAVVNYLD----NVGINEIEENT---- 175 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 +++A++G+PN GKS+L+N +LG R++ G TRD++ Sbjct: 176 --------------------IKVAIIGKPNTGKSSLVNYILGEERVIVSDIPGTTRDAID 215 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 ++ ++ PI + DTAG+R+ S+I +++E+ ++ +++Q++ + I+LLD T +QD Sbjct: 216 STFEFEGIPITLIDTAGLRRKSKIYDNVERYSMLRTLQAIERSDICIILLDGTEGVSEQD 275 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 ++ + G ++A+NKWD V + + + + L + + IS +TG Sbjct: 276 AKVAGYAYEAGKGCIVAVNKWDAVEKDEKTADEYKKQIEEKLSFLKFAPVLFISAKTGFR 335 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 + L+ +VL + + + RITT LN L + PP+ + ++ Y+TQ+ PP Sbjct: 336 VKKLLETVLYVYENYTRRITTGQLNDVLAEATTIYQPPSDKGKQLKIYYMTQVGEKPPKI 395 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 IF + SY+RY+ N LR F +G+PI Sbjct: 396 AIFVNSKDLFHFSYQRYIENYLRKTFDFTGVPI 428 >gi|51892817|ref|YP_075508.1| GTP-binding protein [Symbiobacterium thermophilum IAM 14863] gi|81826113|sp|Q67NS9|DER_SYMTH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|51856506|dbj|BAD40664.1| GTP-binding protein [Symbiobacterium thermophilum IAM 14863] Length = 471 Score = 269 bits (688), Expect = 7e-70, Method: Compositional matrix adjust. Identities = 148/461 (32%), Positives = 244/461 (52%), Gaps = 28/461 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA-DG 63 +AIVG PNVGKSTLFNRL + + A+V + PG+TRDRLY NG +VDT GI D Sbjct: 5 VAIVGRPNVGKSTLFNRLTQSRHAIVEDQPGVTRDRLYADTEWNGRTLTLVDTGGIQLDK 64 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + +I + Q ELAI EA +I+F++D G+T D + LR++ P+I+ NK++ Sbjct: 65 EGDTIEAHVTRQAELAIREADVIIFVVDVTDGVTAPDLEVADLLRRQRKPVIVAVNKVEN 124 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + E ++L + ++ +SAEH LGT +L + P+ +E Sbjct: 125 LKREDEALEFWALGLEPLINVSAEHGLGTGDLLDAVVAAL----PDL----------SEP 170 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 P+E P+R+AV+GRPNVGKS+L+N +LG R++ G TRD++ Sbjct: 171 EPEE-------------GGPVRVAVIGRPNVGKSSLVNAILGEERVIVSDVPGTTRDAID 217 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + + DTAGMR+ +R+ E++E+ +V +++++V + ++++DA +QD Sbjct: 218 VLVERGEDKFLLIDTAGMRRKARVEEAVERYSVMRALRAVERAQVVLIVIDAQDGVTEQD 277 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 RI G A ++ +NKWD++ + + + L + I+ +S +T Sbjct: 278 QRIAGYAHENGKACIVVVNKWDLIEKDDRTMAKMTEEVRMRLAFMDYAMIHFVSAKTRAR 337 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 + L+ + E RI+T LN +++ NPPP+ R ++ Y TQ SPP F Sbjct: 338 VHRLLPLIKEAAANHARRISTRELNDLVREAVALNPPPSDKGRRLKIFYATQPHVSPPGF 397 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 + F + SY+RYL N+LR ++ G PI + F++ + Sbjct: 398 VFFVNDSELVHFSYQRYLENQLRQTYAFEGTPINLYFRTRE 438 >gi|197122609|ref|YP_002134560.1| GTP-binding protein EngA [Anaeromyxobacter sp. K] gi|196172458|gb|ACG73431.1| small GTP-binding protein [Anaeromyxobacter sp. K] Length = 465 Score = 269 bits (688), Expect = 7e-70, Method: Compositional matrix adjust. Identities = 151/464 (32%), Positives = 246/464 (53%), Gaps = 18/464 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTLFNRL +++A+V + PG+TRDR Y I G ++VDT G Sbjct: 8 VALVGRPNVGKSTLFNRLAGRRVAIVEDVPGVTRDRNYADVIWEGRAVSVVDTGGFEPES 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + Q+ +Q +LA++EA ++ ++D + G+T D + LR+ P+ + NK+DT Sbjct: 68 RDRLMSQVREQAQLAVDEASAVVLVVDGRDGLTALDRNVADLLRRAGKPLFVAVNKVDTA 127 Query: 125 IAQRN--FYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 + + E Y L F E+ +SAEH G S L I + + Sbjct: 128 RTEEDVPLAEFYGLGFGEVHAVSAEHGRGVSGLVDAIVEKLALP-------PLPPAPEEA 180 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 + P+E SE + V +I R+A+VGRPNVGKST +N LLG R + G TRD++ Sbjct: 181 DEPQE--VSEAERPVGDI----RLAIVGRPNVGKSTFVNALLGEERFVVSDVPGTTRDAI 234 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 K + DTAG+R+ I +E +V ++M+++ E LLDAT +Q Sbjct: 235 DSLVAHKGRRFVVTDTAGIRRKRSIALKVESFSVVRAMKAMDQAEVVACLLDATEAGVEQ 294 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQD-LRTKAIKNLPQIGDIYINTISGRTG 361 D R++ V G A+V+ +NKWD ++++ QD R + K LP +G + +S + Sbjct: 295 DARLLGLVAEKGKALVIVVNKWD-IAEREGATQDWYRKELTKRLPFVGFAPMLFVSAKER 353 Query: 362 EGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 G+ ++ + + ++ R T LN L+ Q ++P P R +L Y+ Q+ +PP Sbjct: 354 RGVHRVLEKAARLVEQYRARFPTPQLNELLEALQDEHPAPIARGRRVKLYYVAQVAYAPP 413 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 +F+I P+ + + Y+RY+ NR R F L +P+R+ F+ ++ Sbjct: 414 TFVIQANHPDGLTDHYRRYIENRFRDAFGLE-VPMRLVFKERQH 456 >gi|222528757|ref|YP_002572639.1| GTP-binding protein EngA [Caldicellulosiruptor bescii DSM 6725] gi|222455604|gb|ACM59866.1| small GTP-binding protein [Caldicellulosiruptor bescii DSM 6725] Length = 440 Score = 269 bits (687), Expect = 7e-70, Method: Compositional matrix adjust. Identities = 147/453 (32%), Positives = 243/453 (53%), Gaps = 28/453 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AIVG PNVGKSTLFNRL+ ++ A+V + PGITRDR+ G+ G+ FN++DT GI Sbjct: 4 TVAIVGRPNVGKSTLFNRLIGERRAIVDDTPGITRDRIIGETEWRGITFNVIDTGGIEPY 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 I KQM Q + AI+ + +I+F++D K G+T D + + LR PI++ NK+D Sbjct: 64 SEDIILKQMRRQAQFAIDMSDVIIFMVDGKTGLTDADREVANMLRTSKKPIVLAVNKIDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 Q YE Y L + + +SAEH G ++ + N N+E Sbjct: 124 ISQQAMIYEFYELGLSDPIAMSAEHGTGVGDVLDAVV-----------------NYLNKE 166 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 E EG +++A++G+PN GKS+L+N +LG R++ G TRD++ Sbjct: 167 GINE--IEEG---------TIKVAIIGKPNTGKSSLVNYILGEERVIVSDIPGTTRDAID 215 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 ++ ++ PI + DTAG+R+ S+I +++E+ ++ +++Q++ + I+LLD T +QD Sbjct: 216 STFEFEGIPITLIDTAGLRRKSKIYDNVERYSMLRTLQAIERSDICIILLDGTENVSEQD 275 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 ++ + G ++A+NKWD V + + + + L + + IS +TG Sbjct: 276 AKVAGYAYEAGKGCIVAVNKWDAVEKDEKTADEYKKQIEEKLSFLKFAPVLFISAKTGFR 335 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 + L+ +VL + + RITT LN L + PP+ + ++ Y+TQ+ PP Sbjct: 336 VKKLLETVLYVYGNYTRRITTGQLNDVLAEATTIYQPPSDKGKQLKIYYMTQVCEKPPKI 395 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 IF + SY+RY+ N LR F +G+PI Sbjct: 396 AIFVNSKDLFHFSYQRYIENYLRKTFDFTGVPI 428 >gi|289207923|ref|YP_003459989.1| ribosome-associated GTPase EngA [Thioalkalivibrio sp. K90mix] gi|288943554|gb|ADC71253.1| ribosome-associated GTPase EngA [Thioalkalivibrio sp. K90mix] Length = 484 Score = 269 bits (687), Expect = 7e-70, Method: Compositional matrix adjust. Identities = 154/470 (32%), Positives = 255/470 (54%), Gaps = 7/470 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI IA+VG PNVGKSTLFN+L + + A+V + G+TRDR YG + + +VDT G+ Sbjct: 1 MIPVIALVGRPNVGKSTLFNQLTRSRDALVADVAGLTRDRQYGIGKVGDFPYLVVDTGGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + G+ + + M +QT+ A+ EA +LFL+D++ G+TP D AI LR + +V NK Sbjct: 61 S-GEGAEMDRAMAEQTQRAVAEADHVLFLVDARDGLTPQDQAIADQLRSAGVKARVVVNK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 D A E Y+L EI I+A H G L + + + E Sbjct: 120 TDGLDADAVSAEFYTLGMGEITSIAAAHGRGIKGLMQKVRRAVAAER----REAEAAEGA 175 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 EE+ ++ + + + + +R+A+VGRPNVGKSTL+NR+LG R++ +G TRD Sbjct: 176 AEEAAEDGLDEASQQAALDDWPGIRVAIVGRPNVGKSTLVNRILGDERVVATDVAGTTRD 235 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ + ++ + DTAG+R+ +R+ E +E+ +V K++Q++ I+++DA Sbjct: 236 SIFVPFSRDGQDYTLIDTAGVRRRARVHEVIEKFSVIKTLQAIEAAHVVILVMDAQAGLS 295 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 +QD ++ V ++G A+VLA+NKWD ++ + + +R + L + + IS Sbjct: 296 EQDAHLLGLVIDSGRALVLAVNKWDGMAPEER--ERVRDDLDRRLGFVNFARLRLISALH 353 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G + L+ V E + +++T L L+ ++ PP + R +L+Y Q +P Sbjct: 354 GTNVGHLLEDVQEAHTSAFAKVSTPELTRLLESAVAEHAPPLVSGRRIKLRYAHQGGQNP 413 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 P +I + +P SYKR+L N R + L G P+RM F+S +NPY + Sbjct: 414 PVIVIHGNQTDALPGSYKRFLENFFRKHLGLVGTPLRMEFRSGRNPYAGR 463 >gi|146283357|ref|YP_001173510.1| GTP-binding protein EngA [Pseudomonas stutzeri A1501] gi|166225844|sp|A4VNW7|DER_PSEU5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|145571562|gb|ABP80668.1| GTP-binding protein EngA [Pseudomonas stutzeri A1501] gi|327481749|gb|AEA85059.1| GTP-binding protein EngA [Pseudomonas stutzeri DSM 4166] Length = 499 Score = 269 bits (687), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 168/472 (35%), Positives = 260/472 (55%), Gaps = 12/472 (2%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ IA+VG PNVGKSTLFNRL K + A+V + G+TRDR YG+A G + ++DT GI Sbjct: 1 MVPVIALVGRPNVGKSTLFNRLTKSRDAIVAEYAGLTRDRQYGEAKWQGRTYIVIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + G I +M +Q+ AI EA +LF++DS+AG+T D I LRK+N +V+NK Sbjct: 61 S-GDEEGIDAKMAEQSLQAIEEADAVLFMVDSRAGLTAADQMIGEHLRKRNKRCFLVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D+ E L + + I+A H G S + IF + ++ E E + Sbjct: 120 VDSVDPDIARAEFSPLGLGDALPIAAAHGRGISHMLEQALGIFPK---DNADENAEGEEG 176 Query: 181 NEESPKENITSEGKSSVKNISKP-----LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQS 235 E + E + +EG+ K I P ++IA++GRPNVGKSTL+NR+LG R++ Q+ Sbjct: 177 GELAEGEEVVAEGQEP-KRIPGPSEKEGIKIAIIGRPNVGKSTLVNRMLGEERVIVYDQA 235 Query: 236 GITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDA 295 G TRDS+ I + + DTAG+R+ +I E++E+ +V K++Q+++ I ++DA Sbjct: 236 GTTRDSIYIPFERDEEKYTLIDTAGVRRRGKIFEAVEKFSVVKTLQAIQDANVVIFVMDA 295 Query: 296 TIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINT 355 + DL ++ V TG A+V+ALNKWD + ++T+ + L + I+ Sbjct: 296 REGVVEHDLNLLGFVLETGRALVIALNKWDGMEQGEK--DYVKTELERRLFFVDYADIHF 353 Query: 356 ISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQ 415 IS + G G+ L SV K TR TS L L+ ++ PP + +R +L+Y Sbjct: 354 ISAKHGTGVGHLYKSVQAAFKSAITRWPTSRLTQILEDAVREHQPPMVNSRRIKLRYAHL 413 Query: 416 IQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 ++PP +I + +P+SY RYL N R L G PIR+ ++ NPY Sbjct: 414 GGANPPLIVIHGNQVDAVPKSYTRYLENTYRRVLKLVGTPIRIEYKGGDNPY 465 >gi|300812163|ref|ZP_07092607.1| ribosome-associated GTPase EngA [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496848|gb|EFK31926.1| ribosome-associated GTPase EngA [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 435 Score = 269 bits (687), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 145/460 (31%), Positives = 251/460 (54%), Gaps = 30/460 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNR++ +++A+V + PG+TRDR Y +A G F+I+DT GI + Sbjct: 6 VAIVGRPNVGKSTLFNRIINERVAIVEDRPGVTRDRNYARASWMGHQFSIIDTGGIT-WE 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +I +++ Q E+AI EA +I+ L D+ G+T D I L + + P+++ NK D Sbjct: 65 DSTIDEEIRAQAEIAIEEADVIVMLADASQGVTSLDERIAHLLYRADKPVLLAVNKADNP 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + Y+ YSL + + +S H G +L E+++N + E Sbjct: 125 EQRTDIYDFYSLGLGDPIPVSGSHGTGIGDLLD---------------EVVKNFPADAEK 169 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 +E + S +V+GRPNVGKS+++NRLLG R++ ++ G TRD++ Sbjct: 170 TEEGVIS--------------FSVIGRPNVGKSSIVNRLLGEERVIVANEEGTTRDAIDT 215 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + DTAG+R+ ++ E E+ +V ++M ++ + I++LDA+ +QD Sbjct: 216 PFVKDGTKFRVVDTAGIRRRGKVYEKTEKYSVMRAMSAMERSDVAILVLDASTGIREQDK 275 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 + G +++A+NKWD+ + +D + + I +S +TG+ + Sbjct: 276 HVAGYAHEAGLGMIIAVNKWDLPKKDSSSGKDFEAVIREEFSYLDYAPIVFVSAKTGKNV 335 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 D L V E+ + RI +S LN L + P P + + R+ Y+TQ++++PP+F+ Sbjct: 336 DQLPKMVKEVYENKNQRIQSSVLNDLLLEASRLVPAPMVKGKRLRVYYMTQVKTNPPTFV 395 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 +FC P + SY+R+LIN+LR NF +G PI++ + K Sbjct: 396 VFCNDPELMHFSYQRFLINQLRENFDFTGTPIKILPRKRK 435 Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 46/181 (25%), Positives = 90/181 (49%), Gaps = 21/181 (11%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI- 60 + + +++G PNVGKS++ NRL+ ++ +V N G TRD + + +G F +VDTAGI Sbjct: 174 VISFSVIGRPNVGKSSIVNRLLGEERVIVANEEGTTRDAIDTPFVKDGTKFRVVDTAGIR 233 Query: 61 ------ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPI 114 + S+ + M+ A+ + + + ++D+ GI D + + + + + Sbjct: 234 RRGKVYEKTEKYSVMRAMS-----AMERSDVAILVLDASTGIREQDKHVAGYAHEAGLGM 288 Query: 115 IIVSNKMD----TRIAQRNF-----YEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQ 165 II NK D + ++F E LD+ IV +SA+ +L ++ ++++ Sbjct: 289 IIAVNKWDLPKKDSSSGKDFEAVIREEFSYLDYAPIVFVSAKTGKNVDQLPKMVKEVYEN 348 Query: 166 K 166 K Sbjct: 349 K 349 >gi|291613885|ref|YP_003524042.1| ribosome-associated GTPase EngA [Sideroxydans lithotrophicus ES-1] gi|291583997|gb|ADE11655.1| ribosome-associated GTPase EngA [Sideroxydans lithotrophicus ES-1] Length = 465 Score = 269 bits (687), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 158/472 (33%), Positives = 253/472 (53%), Gaps = 33/472 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ T+ +VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+ + + +VDT G+ Sbjct: 1 MLPTLVLVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGRGRVGERPYLVVDTGGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 I +M QT A++EA L+LF++D + G+TP D I + LRK P++++ NK Sbjct: 61 EPVAKEGIMHEMAKQTRQAVDEADLVLFIVDGRDGLTPQDRIIATQLRKTGRPVMLLVNK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + +R + + L E + IS+ H +E+ V Sbjct: 121 AEGMRRERVTADFHELGLGEPIPISSAHGDNVAEMIEVAL-------------------- 160 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 +E P + +E KS P ++A+VGRPNVGKSTL+N +LG R++ Q G TRD Sbjct: 161 -DELPAAEVEAEEKS-----DHP-KLAIVGRPNVGKSTLVNAILGEERVIAFDQPGTTRD 213 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ I + I DTAG+R+ +I E++E+ +V K++Q++ ++++DA Sbjct: 214 SIYIDFERAGRQYTIIDTAGIRRRGKIDEAIEKFSVVKTLQAIEDANVVVLVVDARDQIT 273 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSD--KLNLLQDLRTKAIKNLPQIGDIYINTISG 358 +QD + D V G A+VLA+NKWD + + + + +D+ K L + + IS Sbjct: 274 EQDAHLADFVLQAGRALVLAVNKWDGLDEYKRDTVKRDIERK----LHFLSFAKHHFISA 329 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 G G+D L+ SV + T++ T L L++ + PP + + +++Y Q S Sbjct: 330 LNGTGVDALLKSVNQAYTAAMTKMPTPQLTRVLEEALQKQQPPRVGSFRPKMRYAHQGGS 389 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I + +KIP+SY RYL F L G P+R+ F+S KNP+ K Sbjct: 390 NPPLIIIHGSALDKIPDSYTRYLEKTFCDAFKLQGTPLRIEFKSGKNPFADK 441 >gi|192362315|ref|YP_001981972.1| GTP-binding protein EngA [Cellvibrio japonicus Ueda107] gi|238692428|sp|B3PDM5|DER_CELJU RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|190688480|gb|ACE86158.1| GTP-binding protein EngA [Cellvibrio japonicus Ueda107] Length = 466 Score = 269 bits (687), Expect = 9e-70, Method: Compositional matrix adjust. Identities = 164/470 (34%), Positives = 251/470 (53%), Gaps = 35/470 (7%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI IA+VG PNVGKSTLFNRL + A+V ++PG+TRDR YG+A + F ++DT GI Sbjct: 1 MIPVIALVGRPNVGKSTLFNRLTNSRDALVADYPGLTRDRKYGEARLENRRFIVIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + G+ I M Q+ LAI EA ++LF++DS+ G+ P D I LR N +V+NK Sbjct: 61 S-GEEEGIDSAMAGQSLLAIQEADIVLFIVDSRVGLNPADELIARHLRVHNKKTYVVANK 119 Query: 121 ---MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 MD IA FYE L E+ +A H G L + +YP Sbjct: 120 IDGMDPDIALAPFYE---LGMGEVHPTTATHGRGVRSLMEDVLA----EYP--------- 163 Query: 178 NKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGI 237 E P+E E ++IA+VGRPNVGKSTL+NRLLG +R++ Q G Sbjct: 164 -----EIPEEEQQGEATG--------IKIAIVGRPNVGKSTLVNRLLGEDRVVVYDQPGT 210 Query: 238 TRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATI 297 TRDS+ I++ + P + DTAG+R+ I ++E+ ++ K+MQ++ I+++DA+ Sbjct: 211 TRDSIYINYTRFDKPYTLIDTAGVRRRKNIDLAVEKFSIVKTMQAIADANVVILVMDASE 270 Query: 298 PFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTIS 357 +QDL ++ + G A+V+ALNKWD + + ++ + + L + I+ IS Sbjct: 271 GIVEQDLHLMGTAIEAGRALVIALNKWDGLDESHKYY--VKNELERRLRFVDFANIHFIS 328 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 G G+ +L S+ + + R +T+YL LQ ++ PP I R +L+Y Sbjct: 329 ALHGTGVGNLYKSIEQAYQSATDRFSTNYLTRILQDAVREHQPPMINGRRIKLRYAHPGG 388 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 +PP ++ + +P Y +YL R L G PIR+ F+++ NPY Sbjct: 389 HNPPVIIVHGNQTDDVPGHYVKYLEKTYRRVLDLHGTPIRIEFRTTDNPY 438 >gi|89890093|ref|ZP_01201604.1| GTPase [Flavobacteria bacterium BBFL7] gi|89518366|gb|EAS21022.1| GTPase [Flavobacteria bacterium BBFL7] Length = 433 Score = 269 bits (687), Expect = 9e-70, Method: Compositional matrix adjust. Identities = 150/452 (33%), Positives = 243/452 (53%), Gaps = 29/452 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNRL++++ A+ G+TRDR YG++ NG F+++DT G G Sbjct: 4 VAIVGRPNVGKSTLFNRLIQRREAITDAVSGVTRDRHYGKSDWNGKEFSVIDTGGYVVGS 63 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +++ Q ELAI+EA +I+F++D+++GIT D + LRK P+I+ NK+D Sbjct: 64 DDVFEAEIDHQVELAIDEADVIVFMVDAESGITGMDEDVAKLLRKVKKPVILAVNKVDNP 123 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 +++ YE Y+L E +S+ GT +L I ++ P+ P Sbjct: 124 QREQDAYEFYNLGLSEYFTLSSTSGSGTGDLLDRIVELL----PDTP------------- 166 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 V+ S R AVVGRPN GKS+ IN L+G R + +G TRDS+ Sbjct: 167 ------------VREDSDLPRFAVVGRPNAGKSSFINALIGEERYIVTDIAGTTRDSIDT 214 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 +N + DTAG+R+ ++ E LE +V +S++++ + I++LDAT F+ Q Sbjct: 215 KYNRFGFEFNLVDTAGIRRKKKVKEDLEFYSVMRSVRAIEHADVCILILDATRGFDGQVQ 274 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 I +V+ +NKWD+V + N ++ + K + D+ I IS + + Sbjct: 275 NIFWLAERNRKGIVVLVNKWDLVDKETNTAKEYEAQIRKEMEPFTDVPIVFISVLNKQRI 334 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 + + +++ K RI TS LN + PPP++ ++ ++K++TQ+ + P F Sbjct: 335 FKAIETAVDVFKNRSKRIKTSELNEVMLPIIEHYPPPSLKGKFVKIKFVTQLPTPQPQFA 394 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 FC P I + YKRYL N+LR NF +G+P+ Sbjct: 395 FFCNLPQYIRDPYKRYLENQLRNNFDFNGVPV 426 >gi|331269697|ref|YP_004396189.1| small GTP-binding protein [Clostridium botulinum BKT015925] gi|329126247|gb|AEB76192.1| small GTP-binding protein [Clostridium botulinum BKT015925] Length = 438 Score = 269 bits (687), Expect = 9e-70, Method: Compositional matrix adjust. Identities = 154/460 (33%), Positives = 244/460 (53%), Gaps = 28/460 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFN+L K++A+V + PG+TRDR+Y QA F I+DT GI Sbjct: 6 VAIVGRPNVGKSTLFNKLAGKRIAIVDDMPGVTRDRIYAQAEWLNNKFTIIDTGGIEPES 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I QM Q ++AI A ++LF++D K G+ D + LRK N I++ NK+D Sbjct: 66 EDVIVAQMRRQAQMAIEMADVVLFIVDGKQGLADADREVAQMLRKANKSIVLAVNKIDRH 125 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 N YE Y+L + + IS+ LG +L + K+P+ + E+++ NE Sbjct: 126 QLDDNIYEFYNLGLGDPMAISSSQGLGLGDLLDEVV----DKFPS----VNEDDEENEY- 176 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 +RIA+VGRPNVGKS+LINR+LG + + + G TRDSV Sbjct: 177 -------------------IRIAMVGRPNVGKSSLINRILGEEKHIVSNIPGTTRDSVDS 217 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + DTAG+R+ S+I E +E+ + +++ S+ + I++LDA +QD Sbjct: 218 YIEREEGKFALIDTAGLRRKSKIKEQVERYSAVRTIASIENADVCILMLDAEQGIAEQDE 277 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 +I+ A+++ +NKWD++ +++ + K L + IS +TG+ + Sbjct: 278 KIIGYAHELNKAIMVIVNKWDLIEKDDKTMKNFKDKLRYELSFLPYASFLFISAKTGQRV 337 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 + ++ E + R+ T LN + K L PP + ++ Y+TQI + PP+F+ Sbjct: 338 NKVLGMAKECYNNYCKRVKTGILNEVISKAILMKEPPIVGTSRLKVYYVTQIGTKPPTFI 397 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 F P + SY+RYL N+LR NF SG I++ F+ K Sbjct: 398 FFVNNPELVHFSYRRYLENQLRENFDFSGTGIKLEFRERK 437 >gi|261495041|ref|ZP_05991508.1| putative GTP-binding protein [Mannheimia haemolytica serotype A2 str. OVINE] gi|261309283|gb|EEY10519.1| putative GTP-binding protein [Mannheimia haemolytica serotype A2 str. OVINE] Length = 504 Score = 268 bits (686), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 161/483 (33%), Positives = 254/483 (52%), Gaps = 23/483 (4%) Query: 8 VGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNCS 67 +G PNVGKSTLFNRL + + A+V + PG+TRDR YG A I G F ++DT GI DG Sbjct: 1 MGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGHANIAGYDFIVIDTGGI-DGTEEG 59 Query: 68 IAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQ 127 + ++M +Q+ LAI EA ++LFL+D++AG+ P D I +LR++ ++V+NK D A Sbjct: 60 VEEKMAEQSLLAIEEADVVLFLVDARAGLLPADVGIAQYLRQREKTTVVVANKTDGIDAD 119 Query: 128 RNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF---------KIFKQKYPNHPLEMIENN 178 + E Y L E+ +I+A G ++L + + F Q+ + + N Sbjct: 120 SHCAEFYQLGLGEVEQIAAAQGRGVTQLIEQVLAPLGEQLNAEQFNQEQAGENAKNVANE 179 Query: 179 KRNE---ESPKENITSEGKSSVKNI--------SKPLRIAVVGRPNVGKSTLINRLLGYN 227 + +E E EN K ++IA+VGRPNVGKSTL NR+LG Sbjct: 180 ETDEWDTEFDFENEEDAALLDEALAEEAEESIEDKNIKIAIVGRPNVGKSTLTNRILGEE 239 Query: 228 RLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCE 287 R++ G TRDS+ I I DTAG+RK ++ ++E+ +V K++Q+++ Sbjct: 240 RVVVYDMPGTTRDSIYIPMERDGQQYTIIDTAGVRKRGKVNLAVEKFSVIKTLQAIQDAN 299 Query: 288 TTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQ 347 ++ +DA QDL ++ + N G ++V+ +NKWD +S ++ ++++ + L Sbjct: 300 VVLLTIDAREGISDQDLSLLGFILNAGRSLVIVVNKWDGLSQ--DIKDQVKSELDRRLDF 357 Query: 348 IGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRY 407 I ++ IS G G+ +L SV E + +TS L L+ + PP + R Sbjct: 358 IDFARVHFISALHGSGVGNLFDSVKEAYACATQKTSTSMLTRILRMAADEYQPPLVNGRR 417 Query: 408 NRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 +LKY +PP +I K+ +SYKRYL N R + + G PIR+ FQ NP+ Sbjct: 418 VKLKYAHPGGYNPPIIVIHGNQVEKLADSYKRYLSNYFRKSLKIIGSPIRILFQEGNNPF 477 Query: 468 IKK 470 K Sbjct: 478 AGK 480 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 62/173 (35%), Positives = 94/173 (54%), Gaps = 15/173 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD-G 63 IAIVG PNVGKSTL NR++ ++ VV + PG TRD +Y +G + I+DTAG+ G Sbjct: 218 IAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGQQYTIIDTAGVRKRG 277 Query: 64 K-NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 K N ++ K +T AI +A+++L ID++ GI+ D ++ F+ ++IV NK D Sbjct: 278 KVNLAVEKFSVIKTLQAIQDANVVLLTIDAREGISDQDLSLLGFILNAGRSLVIVVNKWD 337 Query: 123 TRIAQRNFYEIYS--------LDFKEIVEISAEHDLGTSELHSVIFKIFKQKY 167 ++Q ++ S +DF + ISA H G L F K+ Y Sbjct: 338 G-LSQDIKDQVKSELDRRLDFIDFARVHFISALHGSGVGNL----FDSVKEAY 385 >gi|150026003|ref|YP_001296829.1| GTP-binding protein EngA [Flavobacterium psychrophilum JIP02/86] gi|166198714|sp|A6H103|DER_FLAPJ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|149772544|emb|CAL44027.1| GTP-binding protein EngA [Flavobacterium psychrophilum JIP02/86] Length = 436 Score = 268 bits (686), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 149/452 (32%), Positives = 244/452 (53%), Gaps = 27/452 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNRL++++ A+V + G+TRDR YG++ NG F+++DT G G Sbjct: 5 VAIVGRPNVGKSTLFNRLIQRREAIVDSVSGVTRDRNYGKSEWNGKEFSVIDTGGYIRGS 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + ++ Q ELAI+E+ +I+F++D + GITP D A+ LRK P+++ NK+D Sbjct: 65 DDIFEGEIRKQVELAIDESDVIIFVVDVEEGITPMDDAVAKMLRKVTKPVLLAVNKVDNA 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + +++ E Y+L E ++ GT +L + F P PL E Sbjct: 125 MREKDAVEFYNLGLGEYYTFASISGSGTGDLLDALIDAF----PIKPLPTQEE------- 173 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 I P R AVVGRPN GKS+ IN L+G R + +G TRDS+ Sbjct: 174 ---------------IVLP-RFAVVGRPNAGKSSFINALIGKERFMVTDIAGTTRDSIDT 217 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 ++ + DTAG+R+ +++ E LE +V +S++++ + I+++DAT FE QD Sbjct: 218 KYDRFGFEFNLVDTAGIRRKAKVKEDLEFYSVMRSVRAIEHADVCILIIDATRGFEGQDQ 277 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 I VV+ +NKWD+V +D K + L D+ I +S T + L Sbjct: 278 SIFWLAEKNRKGVVILVNKWDLVEKDTMSTRDYEAKIREELMPFVDVPILFVSALTKQRL 337 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 + + +++ + + RI+TS N ++ K +PPP + ++ ++KY Q+ + P F+ Sbjct: 338 LKALEATVQVYENRQQRISTSKFNEYMLKIIENHPPPALKGKFVKIKYCMQLPTPTPQFV 397 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 F P + ++YKR+L N++R N+ G+PI Sbjct: 398 FFANLPQYVKDAYKRFLENKIRENWDFEGVPI 429 >gi|256820197|ref|YP_003141476.1| GTP-binding protein EngA [Capnocytophaga ochracea DSM 7271] gi|256581780|gb|ACU92915.1| small GTP-binding protein [Capnocytophaga ochracea DSM 7271] Length = 434 Score = 268 bits (686), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 149/461 (32%), Positives = 244/461 (52%), Gaps = 29/461 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +AIVG PNVGKST FNRL+K++ A+V G+TRDR YG+ NGV F+++DT G Sbjct: 1 MSAIVAIVGRPNVGKSTFFNRLIKRREAIVDAVSGVTRDRHYGKTDWNGVSFSVIDTGGY 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 G + S K++N Q LAI+EA I+F+++ + G+T D ++ LRK + PI++ NK Sbjct: 61 LAGGDDSFEKEINKQVALAIDEADAIIFMVNVEEGLTGMDESVAELLRKCHKPILVAVNK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D+ + + +E Y+L F+ + +S+ + GT EL + + +K Sbjct: 121 VDSNNRRNDMHEFYALGFEHLYALSSVNGSGTGELLDDLVALLPEK-------------- 166 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 E +EN R AVVGRPN GKS+ IN L+G +R + +G TRD Sbjct: 167 --EKQEENTLP-------------RFAVVGRPNAGKSSFINALIGEDRYIVTDIAGTTRD 211 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 ++ +N + DTAG+R+ +++ E LE +V +S++++ + I++LDAT FE Sbjct: 212 AIDTKYNRFGFEFNLVDTAGIRRKAKVKEDLEFYSVMRSIRAIEHSDVCILMLDATRGFE 271 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 QD I +V+ +NKWD+V + N + K + D+ I +S Sbjct: 272 SQDANIFWLAQRNRKGIVILVNKWDLVEKENNTAKQYEAAIRKEIEPFTDVPILFVSALN 331 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 + + + + + + RI T LN + PPP I +Y ++K+ TQ+ + Sbjct: 332 KQRIYKAIETAVAVYNNRTKRIPTRKLNEVMLPIIENYPPPAIKGKYIKIKFCTQLPTPM 391 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 P F F P + + Y+R++ N+LR NF +G+PI + F+ Sbjct: 392 PQFAFFANLPQYVKDPYRRFIENKLRENFDFNGVPIDVYFR 432 >gi|308187766|ref|YP_003931897.1| GTP-binding protein engA [Pantoea vagans C9-1] gi|308058276|gb|ADO10448.1| GTP-binding protein engA [Pantoea vagans C9-1] Length = 496 Score = 268 bits (686), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 163/479 (34%), Positives = 261/479 (54%), Gaps = 16/479 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A + G F ++DT GI Sbjct: 1 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFIVIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ LAI EA ++LF++D++AG+ D I LR + +V+NK Sbjct: 61 -DGTEEGVETRMAEQSLLAIEEADVVLFMVDARAGMMAADQQIAKHLRSRQKATFLVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 D + + YSL EI I+A H G S L + ++ L E N+ Sbjct: 120 TDGLDPDQAVVDFYSLGLGEIHAIAASHGRGVSSLIEEALLPWMEEAETVELTEEEENQA 179 Query: 181 -----NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQS 235 + E +E + + P+++A+VGRPNVGKSTL NR+LG +R++ Sbjct: 180 YWAALEADEIAEQEAAEEEENFDPTGLPIKLAIVGRPNVGKSTLTNRILGEDRVVVYDMP 239 Query: 236 GITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDA 295 G TRDS+ I + DTAG+RK ++I++++E+ +V K++Q++ ++++DA Sbjct: 240 GTTRDSIYIPMERDGREYVLIDTAGVRKRAKISDTVEKFSVIKTLQAIEDANVVMLVIDA 299 Query: 296 TIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLP-QIGDI--- 351 QDL ++ + N+G ++V+ +NKWD +S Q++R + + L ++G I Sbjct: 300 HAGISDQDLSLLGFILNSGRSLVIVVNKWDGLS------QEVRDEVKETLDFRLGFIDFA 353 Query: 352 YINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLK 411 I+ IS G G+ +L S+ E R+ TS L + + PP + R +LK Sbjct: 354 RIHFISALHGSGVGNLFESITEAYDCSTRRVNTSLLTRIMNMAADDHQPPLVRGRRVKLK 413 Query: 412 YITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 Y +PP +I +P+SYKRYL+N R + ++ G PIR+ F+ NPY K Sbjct: 414 YAHAGGYNPPIVVIHGNQVKDLPDSYKRYLMNYFRKSLNVMGTPIRIQFKEGDNPYEGK 472 >gi|213961763|ref|ZP_03390029.1| ribosome-associated GTPase EngA [Capnocytophaga sputigena Capno] gi|213955552|gb|EEB66868.1| ribosome-associated GTPase EngA [Capnocytophaga sputigena Capno] Length = 434 Score = 268 bits (686), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 149/461 (32%), Positives = 245/461 (53%), Gaps = 29/461 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +A+VG PNVGKST FNRL+K++ A+V G+TRDR YG+ NGV F+++DT G Sbjct: 1 MSAIVAVVGRPNVGKSTFFNRLIKRREAIVDAVSGVTRDRHYGKTDWNGVSFSVIDTGGY 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 G + S K++N Q LAI+EA I+F+++ + G+T D A++ LRK + PI++ NK Sbjct: 61 LAGGDDSFEKEINKQVALAIDEADAIIFMVNVEEGLTGMDEAVSEMLRKCHKPILVAVNK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D+ + + +E Y+L F+ + +S+ + GT EL + + K P Sbjct: 121 VDSNNRRNDMHEFYALGFEHLYALSSVNGSGTGELLDDLVALLPVKEPQ----------- 169 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 +EN R AVVGRPN GKS+ IN L+G +R + +G TRD Sbjct: 170 -----EENTLP-------------RFAVVGRPNAGKSSFINALIGEDRYIVTDIAGTTRD 211 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 ++ +N + DTAG+R+ +++ E LE +V +S++++ + I++LDAT FE Sbjct: 212 AIDTKYNRFGFEFNLVDTAGIRRKAKVKEDLEFYSVMRSIRAIEHSDVCILMLDATRGFE 271 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 QD I +V+ +NKWD+V + N ++ K + D+ I +S Sbjct: 272 SQDANIFWLAQRNRKGIVILVNKWDLVEKENNTAKEYEAVIRKEIEPFTDVPILFVSALN 331 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 + + + + + + RI T LN + PPP I +Y ++K+ TQ+ + Sbjct: 332 KQRIYKAIETAVAVYNNRTKRIPTRKLNEVMLPIIENYPPPAIKGKYIKIKFCTQLPTPM 391 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 P F F P + + Y+R++ N+LR NF +G+PI + F+ Sbjct: 392 PQFAFFANLPQYVKDPYRRFIENKLRENFDFNGVPIDVYFR 432 >gi|187478830|ref|YP_786854.1| GTP-binding protein EngA [Bordetella avium 197N] gi|115423416|emb|CAJ49950.1| GTP-binding protein [Bordetella avium 197N] Length = 451 Score = 268 bits (686), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 153/466 (32%), Positives = 250/466 (53%), Gaps = 25/466 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTLFNRL + + A+V ++ G+TRDR YG+ + + F ++DT G Sbjct: 7 VALVGRPNVGKSTLFNRLTRSRAALVADYSGLTRDRHYGEGRVGDIPFIVIDTGGFEPVA 66 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIP-IIIVSNKMDT 123 I +M QT AI EA +++FL+D++AGI +DH I LRK +++ NK + Sbjct: 67 KDGILAEMARQTRQAIAEADVVVFLVDARAGINAHDHEIARLLRKSGQQRVLLAVNKAEG 126 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + + L E ISA H G +++IE+ + Sbjct: 127 MNEGKATSDFFELGLGEPHPISAAHGDGV-------------------VDLIESALADLV 167 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 P + I + V++ +++A+VGRPNVGKSTLIN L+G R++ G TRD++ Sbjct: 168 PPADEIADAEEGEVQH---RIKLAIVGRPNVGKSTLINTLMGEERVIAFDMPGTTRDAIE 224 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 I + + DTAG+RK ++ E++E+ +V K++Q++ +++LDA +QD Sbjct: 225 IEFERDGRQYTLIDTAGLRKRGKVFEAVEKFSVIKTLQAIEASNVVLLMLDAQSEISEQD 284 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 I V TG AVV+A+NKWD + D + + + + + L + ++TIS G+G Sbjct: 285 AHIAGFVLETGRAVVVAINKWDGLDD--DQRERIEREFQRKLRFLTFARMHTISALKGQG 342 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 + L+ SV + +++T L LQ Q PP +++Y Q +PP Sbjct: 343 IRPLLKSVNAAHAAAFAKLSTPKLTRELQAAVEQQQPPRKGIFRPKMRYAHQGGQNPPLI 402 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIK 469 ++ + + IP+SY+RYL R R F L+G P+R+ F+SS NPY++ Sbjct: 403 IVHGSALDAIPDSYRRYLETRFRNAFDLAGTPLRIEFKSSHNPYVQ 448 >gi|190574024|ref|YP_001971869.1| GTP-binding protein EngA [Stenotrophomonas maltophilia K279a] gi|229463762|sp|B2FNR1|DER_STRMK RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|190011946|emb|CAQ45567.1| putative GTP-binding protein [Stenotrophomonas maltophilia K279a] Length = 465 Score = 268 bits (685), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 163/472 (34%), Positives = 255/472 (54%), Gaps = 31/472 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIIN-GVIFNIVDTAG 59 M+ +A+VG PNVGKST+FN L + + A+V + PG+TRDR YG ++ F +VDT G Sbjct: 1 MLPLVALVGRPNVGKSTIFNALTRTRDALVHDQPGVTRDRNYGVCRLDEDNHFLVVDTGG 60 Query: 60 IADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 IA G++ +A Q A EA LILF++D++ G + D I ++LRK + P +++ N Sbjct: 61 IA-GEDEGLAGATTRQARAAAAEADLILFVVDAREGTSALDDEILAWLRKLSRPTLLLIN 119 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNK 179 K+D E F E++ +SA H G +L + Q+ P Sbjct: 120 KIDGTDEDSVRSEFARYGFGEMLTVSAAHRQGLDDLLDEVI----QRLP----------- 164 Query: 180 RNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITR 239 EE E + N +RIA VGRPNVGKSTL+NR+LG R++ G TR Sbjct: 165 --EEGSGEEL--------DNDPNRIRIAFVGRPNVGKSTLVNRILGEERMIASDVPGTTR 214 Query: 240 DSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPF 299 DS+++ + DTAG+R+ SR+ E +E+ +V K+MQS+ C+ +++LDAT Sbjct: 215 DSIAVDLERDGREYRLIDTAGLRRRSRVDEVVEKFSVVKTMQSIEQCQVAVLMLDATEGV 274 Query: 300 EKQDLRIVDSVFNTGHAVVLALNKWDMVSD-KLNLLQDLRTKAIKNLPQIGDIYINTISG 358 QD ++ +V + G A+V+A+NKWD +++ + + + + + +P + IS Sbjct: 275 TDQDATVLGAVLDAGRALVIAINKWDGLTEYQREQAETMLSLKLGFVPWAESV---RISA 331 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 + G GL +L +V ++ TTS +N L+ NPPPTI ++L+Y+ + Sbjct: 332 KHGSGLRELFRAVHRAHESANKTFTTSEVNKALEVAYETNPPPTIRGHVSKLRYVHPAGA 391 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP+F++ T ++ ESYKRYL N R F L G P+ F+ NPY K Sbjct: 392 NPPTFIVHGTRLKELQESYKRYLENFFRKRFKLIGTPVSFIFREGTNPYEGK 443 >gi|257439162|ref|ZP_05614917.1| ribosome-associated GTPase EngA [Faecalibacterium prausnitzii A2-165] gi|257198413|gb|EEU96697.1| ribosome-associated GTPase EngA [Faecalibacterium prausnitzii A2-165] Length = 447 Score = 268 bits (685), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 153/456 (33%), Positives = 240/456 (52%), Gaps = 31/456 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTLFN+L +++A+V + PGITRDR++ +G F +VDT GI Sbjct: 6 VAVVGRPNVGKSTLFNKLCGQRLAIVEDTPGITRDRIFANCEWSGHEFMLVDTGGIEPKA 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD-T 123 I M +Q E+AI+ A I+ ++D + G+T D + LR+ + PII+ NK D T Sbjct: 66 TEGILAHMREQAEIAIDTADCIIMVVDVRDGLTAADEEVAHMLRRSHKPIILAVNKCDKT 125 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 A YE Y+L F E++ IS+ H GT +L + L+ E + Sbjct: 126 GEAPMELYEFYNLGFDEVLPISSVHGHGTGDLLDAVCA---------HLDFSETVVEEDR 176 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 P +A++GRPNVGKS+L NR+LG NR++ +++G TRD++ Sbjct: 177 IP--------------------VAIIGRPNVGKSSLTNRILGENRMIVANEAGTTRDAID 216 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + DTAG+RK S I++ LE+ V +++ +V ++L+DAT+ F +QD Sbjct: 217 TPVDNAYGKFIFTDTAGLRKRSNISDGLERYMVVRALAAVERSRVALILVDATVGFTEQD 276 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDK-LNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 ++ G A ++ +NKWD V K N ++ R +G I IS +TG Sbjct: 277 SKVAGYAHEQGKACIIVVNKWDAVEGKETNTMEHQRRDYADCFSFMGYAPIIFISAQTGY 336 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 ++ LM + +++ R+ T LN L + + PP+ R ++ Y+TQ + PP+ Sbjct: 337 NVNKLMQLIRDVDAQNGARVPTGVLNEMLARATARMQPPSDKGRRLKIFYLTQASTRPPT 396 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 F+ F SY+RYLIN++R NF L PIR+ Sbjct: 397 FVAFVNSKQLFHFSYQRYLINQIRENFGLEHTPIRL 432 >gi|15894988|ref|NP_348337.1| GTP-binding protein EngA [Clostridium acetobutylicum ATCC 824] gi|26006729|sp|Q97ID7|DER_CLOAB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|15024676|gb|AAK79677.1|AE007680_10 Predicted GTPase [Clostridium acetobutylicum ATCC 824] gi|325509125|gb|ADZ20761.1| GTP-binding protein EngA [Clostridium acetobutylicum EA 2018] Length = 438 Score = 268 bits (685), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 146/461 (31%), Positives = 240/461 (52%), Gaps = 28/461 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + IVG PNVGKSTLFN+L K++++V + PG+TRDR+Y ++ G F I+DT GI Sbjct: 6 VTIVGRPNVGKSTLFNKLAGKRVSIVEDTPGVTRDRIYAESEWVGKKFTIIDTGGIEPEN 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N I QM Q ++AI + +I+F++D K G+T D+ + LRK PI++V NK+D Sbjct: 66 NDIILTQMRRQAQIAIEMSDVIIFMVDGKQGLTDTDNEVAIMLRKSKKPIVLVVNKIDKN 125 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + N YE Y+L + V IS+ LG ++ + FK Sbjct: 126 VEENNIYEFYNLGIGDPVSISSSQGLGIGDMLDEVVNKFKS------------------- 166 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 + + + ++IA VG+PNVGKS+L NR+LG R++ G TRD++ Sbjct: 167 ---------EGEDEEEEEYIKIAFVGKPNVGKSSLTNRILGEERVIVSDIPGTTRDAIDS 217 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + DTAG+R+ SRI E +E+ + ++M ++ C+ ++LDAT P +QD Sbjct: 218 FLETDFGKLVLIDTAGLRRKSRIKEEIERYSAVRTMAAIERCDVCTLILDATEPISEQDE 277 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 RI+ A+++ +NKWD++ +++ + + IS +TG+ + Sbjct: 278 RIIGYAHENNKAILVIVNKWDLIEKDDKTMENFKKNLEMKFSFMAYAPFLFISAKTGQRV 337 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 ++ + + + RI T LN + L PP + + ++ Y+TQ PP+F+ Sbjct: 338 HKVLSEIKKCYDNYSKRIATGVLNDVISNAVLMKEPPVVAFKRLKIFYVTQTDIKPPTFI 397 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 F P + SY+RYL N+LR +F G I+M F+ KN Sbjct: 398 FFVNNPELLHFSYRRYLENKLRQSFDFEGTGIKMIFKERKN 438 >gi|148380476|ref|YP_001255017.1| GTP-binding protein [Clostridium botulinum A str. ATCC 3502] gi|153932865|ref|YP_001384700.1| GTP-binding protein EngA [Clostridium botulinum A str. ATCC 19397] gi|153936714|ref|YP_001388221.1| GTP-binding protein EngA [Clostridium botulinum A str. Hall] gi|166224327|sp|A7FW89|DER_CLOB1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|166224328|sp|A5I4V0|DER_CLOBH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|148289960|emb|CAL84073.1| putative GTP-binding protein EngA [Clostridium botulinum A str. ATCC 3502] gi|152928909|gb|ABS34409.1| GTP-binding protein [Clostridium botulinum A str. ATCC 19397] gi|152932628|gb|ABS38127.1| ribosome-associated GTPase EngA [Clostridium botulinum A str. Hall] Length = 439 Score = 268 bits (685), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 150/460 (32%), Positives = 245/460 (53%), Gaps = 28/460 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFN+L K++++V + PG+TRDR+Y +A F ++DT GI Sbjct: 6 VAIVGRPNVGKSTLFNKLAGKRISIVQDTPGVTRDRIYAEAEWLNYKFTMIDTGGIEPKS 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I QM Q ++AI A++I+FL+D K G+ P D + LRK P+++V NK+D Sbjct: 66 EDIIVSQMRRQAQIAIEMANVIIFLVDGKEGLAPADKEVAQMLRKSKKPVVLVVNKIDKL 125 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + N YE Y+L + V IS+ LG ++ + + FK ++ES Sbjct: 126 KDENNAYEFYNLGIGDPVTISSSQALGLGDMLDRVVEYFK----------------DDES 169 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 E+ + + IA +G+PNVGKS+LIN+LLG RL+ G TRDS+ Sbjct: 170 AGED------------DERINIAFIGKPNVGKSSLINKLLGEERLIVSDIPGTTRDSIDS 217 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + DTAG+R+ S++ E +E+ +V ++ S+ + I+++DAT +QD Sbjct: 218 YVDTDFGEFTLIDTAGLRRKSKVKEEIERYSVIRTYASIERADVCILMIDATEGISEQDQ 277 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 +I+ + A+++ +NKWD+V + + + NL + IS +TG+ + Sbjct: 278 KIIGYAHDINKAILVIVNKWDLVEKDDKTMDKFKKELKVNLSFMPYAKYLFISAKTGQRV 337 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 ++ + E + R+ T LN + + + PP + + ++ Y+TQI + PP+F+ Sbjct: 338 VKVLQTAKECYDNYNKRVKTGVLNDVISQAIMMKEPPIVGTKRLKIYYVTQIGTKPPTFI 397 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 F P I SY+RYL N+LR NF G I+ F+ K Sbjct: 398 FFVNDPACIHFSYQRYLENQLRENFDFQGTGIKSEFRERK 437 >gi|71065252|ref|YP_263979.1| GTP-binding protein EngA [Psychrobacter arcticus 273-4] gi|123649239|sp|Q4FTW3|DER_PSYA2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|71038237|gb|AAZ18545.1| putative GTP-binding protein, HSR1-related [Psychrobacter arcticus 273-4] Length = 473 Score = 268 bits (685), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 158/471 (33%), Positives = 253/471 (53%), Gaps = 40/471 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI--AD 62 +A++G PNVGKSTLFN+ K + A+V + G+TRDR YG A F +VDT GI AD Sbjct: 7 VALIGRPNVGKSTLFNQFTKSRQALVADLSGLTRDRQYGDATYEDKAFIVVDTGGIGEAD 66 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 I M++Q+ AI+EA +I+F++D++AG+ D I FL P+ +V+NK+D Sbjct: 67 DGRGDIDDYMSEQSYTAIHEADIIVFVVDARAGMIGADAEIGKFLHTLGKPVYVVANKVD 126 Query: 123 TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 + E Y+L E ++A H G L LE++ + N+ Sbjct: 127 G-VHDSAPAEFYALGLGEPYPMAASHGRGVGNL----------------LEVLTADMPNQ 169 Query: 183 ESPKENITSEGKSSVKNISKP--LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 E NI +P L++A++GRPNVGKSTL+NRLLG +R++ G TRD Sbjct: 170 E---------------NIIEPRGLKLAIIGRPNVGKSTLVNRLLGEDRVVVFDMPGTTRD 214 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ I + + DTAG+R+ +I E +E+ +V K++Q++ T++++DA Sbjct: 215 SIYIPYKRDGKDYVLIDTAGVRRRGKIDEKVEKFSVIKTLQAIEDSNVTVIVIDAHEGIV 274 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWD-MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGR 359 QDL ++ + G A+V+A+NKWD + +D+ N ++ + +P + ++ IS Sbjct: 275 DQDLHMIGYALDAGRALVVAINKWDGLTADQKNYIKIEMDRRFNFIPY---VKVHQISAL 331 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 G G+ +L S+L + ++T+ L LQ NPPPT+ R +L+Y + Sbjct: 332 HGTGVGNLYPSILRAYQSSMFEVSTNRLTQILQDAVTANPPPTVAGRRIKLRYAHIGGHN 391 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 PP +I +P+SY+RYL N+ R F L G P+ + F+ ++NPY K Sbjct: 392 PPVIVIHGNQTGSLPKSYQRYLENQFRQVFKLEGTPLNVVFKLNENPYANK 442 >gi|89894997|ref|YP_518484.1| hypothetical protein DSY2251 [Desulfitobacterium hafniense Y51] gi|122482578|sp|Q24VA2|DER_DESHY RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|89334445|dbj|BAE84040.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 441 Score = 268 bits (685), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 169/461 (36%), Positives = 247/461 (53%), Gaps = 36/461 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA-DG 63 +AIVG PNVGKSTLFNRL +A+V N PG+TRDRLY + G F I+DT GI Sbjct: 6 VAIVGRPNVGKSTLFNRLAGGLVAIVENRPGVTRDRLYRDSEWLGRKFTIIDTGGIEFVN 65 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 +N I QM Q E+AI EA +I+F+ID++ TP D I LR+ P+I+ +NK++ Sbjct: 66 ENTPITAQMRRQAEIAIEEADVIVFVIDAQISPTPDDDMIAQTLRRSGKPVILAANKVEN 125 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 A+ YE Y+L E V ISA H + +L + F Sbjct: 126 -FAKTELYEFYNLGLGEPVPISAVHGMNIGDLLDEVVSHFP------------------- 165 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 E+I E +RIAVVGRPNVGKS+L+N LLG R++ + G TRD++ Sbjct: 166 ---EDIEEEVDPDT------IRIAVVGRPNVGKSSLVNTLLGEERVIVSNIPGTTRDAID 216 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 ++ + I DTAGMR+ RI E EQ +V +S+++V + ++LLDA +QD Sbjct: 217 SAFEHEGKHYIIIDTAGMRRKGRIEELTEQYSVSRSLRAVDRSDVILMLLDAGEGVTEQD 276 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVS--DK-LNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 +I G +VL +NKWD++ DK +N + + + + ++I+ +G+ Sbjct: 277 KKIAGYAHEAGKGIVLVVNKWDLIEKDDKTMNRFEKDIREELGFMQYAPTLFISAKTGQR 336 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 L DL+ V E N TR+ T+ LN+ +++ NPPPT R ++ Y TQ+ P Sbjct: 337 VTKLLDLVDFVAEQN---STRVATATLNTLVREWVHLNPPPTDKGRRLKVLYATQVGVKP 393 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 P+F+ F + SY+RYL N+LR +F G PIRM + Sbjct: 394 PTFVFFVNDHELMHFSYRRYLENQLRSSFGFEGSPIRMIVR 434 >gi|330752472|emb|CBL87421.1| GTP-binding protein engA [uncultured Flavobacteria bacterium] Length = 435 Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 155/458 (33%), Positives = 238/458 (51%), Gaps = 30/458 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNRL + + A+ + G TRDR YG + FN++DT G Sbjct: 5 VAIVGRPNVGKSTLFNRLTETREAITDDTSGTTRDRKYGTVVWTNHQFNVIDTGGWITKS 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + S + Q E+++ EA LILF+++ + GIT D I + LR+ PI++V NK+DT Sbjct: 65 DDSFEAAIRGQVEISLEEADLILFMVEIEVGITDLDQDIANLLRRTGKPIMLVCNKVDTS 124 Query: 125 IAQRNFYEIYSLDF-KEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 E Y L EI ISA + GT EL + P P + Sbjct: 125 AHDVGAEEFYRLGLADEIYRISANNGYGTGELLDAVVDAL----PPMPEQ---------- 170 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 + + P ++AVVG+PNVGKST IN +LG R + +G TRDSV Sbjct: 171 --------------EELGLP-KLAVVGKPNVGKSTFINTILGEERNIVTDIAGTTRDSVH 215 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + EI DTAG+RK ++T+ LE + ++++++ + +++LD + P +QD Sbjct: 216 THYQMFGFDFEIVDTAGLRKKKQVTDHLEFYSTVRTIKAIDESDVCLLMLDGSDPMGRQD 275 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 L I + + VV+ +NKWD+V + N ++D+ + DI I S + Sbjct: 276 LNIFWQIVESYRGVVVVVNKWDLVEKETNTMRDMEEMIRERTSPFTDIPIVFTSNVKKQR 335 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 + + + LE+ + +++ TS LN L PPP +Y ++KY+TQI S P+F Sbjct: 336 VLQALETALEVRQARASKVPTSELNDLLLPIIDHYPPPAWKGKYVKIKYVTQIPSQTPTF 395 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 FC P I + YKR+L N+LR ++ G+PIR+ F+ Sbjct: 396 AFFCNLPQYIRDPYKRFLENQLREHYDFQGVPIRLFFR 433 >gi|303257594|ref|ZP_07343606.1| ribosome-associated GTPase EngA [Burkholderiales bacterium 1_1_47] gi|330999635|ref|ZP_08323344.1| ribosome biogenesis GTPase Der [Parasutterella excrementihominis YIT 11859] gi|302859564|gb|EFL82643.1| ribosome-associated GTPase EngA [Burkholderiales bacterium 1_1_47] gi|329574141|gb|EGG55717.1| ribosome biogenesis GTPase Der [Parasutterella excrementihominis YIT 11859] Length = 443 Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 155/474 (32%), Positives = 250/474 (52%), Gaps = 36/474 (7%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ IA+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG I + ++DT G Sbjct: 1 MVPVIALVGRPNVGKSTLFNRLTRSRDALVADFPGLTRDRHYGDGRIGDKPYLVIDTGGF 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + I K+M Q +LAI E+ ++LFL+D +AG+TP D I LR+ +V NK Sbjct: 61 EPIRTEGIVKEMTGQAQLAITESDVVLFLVDGRAGLTPQDQRIAQNLRESGKKTYLVVNK 120 Query: 121 MD--TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 + T A+ FYE L E ISA H G L ++ + F Sbjct: 121 AEGLTETAKAEFYE---LALGEPYTISAAHGEGVKALMDLVLEPF--------------- 162 Query: 179 KRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 P E E ++ +++A+ GRPN GKSTLIN L+G +RL+ G T Sbjct: 163 ------PTEKEIDE----EEDFKHKIKVAIAGRPNAGKSTLINALIGEDRLIAFDMPGTT 212 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RD++ + + +K+ + DTAG+R+ ++ E++E+ +V K++Q++ + ++LLDA Sbjct: 213 RDAIEVEFQYKDRDYTLIDTAGLRRKGKVFEAIEKFSVIKTLQAIESSNVVVLLLDAHAG 272 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSD--KLNLLQDLRTKAIKNLPQIGDIYINTI 356 +QD I + +G A+V+ +NKWD + D + + ++L K + L +YI+ + Sbjct: 273 IAEQDANIAGYILESGRALVVGVNKWDSLDDYERRRVKEELERK-LHFLRWAKIVYISAL 331 Query: 357 SGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQI 416 R GL L+ +V + + +++T L L + + PP +++Y Q Sbjct: 332 EKR---GLHHLLNAVNDAHTAAFMKLSTPKLTRALIEATTRQLPPRAGGGRPKMRYAHQG 388 Query: 417 QSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP ++ +PESY+RYL R F L G P+R+ F+++KNPY +K Sbjct: 389 GQNPPVIVVHGNALQDVPESYRRYLEGWFRDKFKLEGTPLRIEFRTNKNPYAQK 442 >gi|116749242|ref|YP_845929.1| small GTP-binding protein [Syntrophobacter fumaroxidans MPOB] gi|189037168|sp|A0LJ92|DER_SYNFM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|116698306|gb|ABK17494.1| small GTP-binding protein [Syntrophobacter fumaroxidans MPOB] Length = 446 Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 165/466 (35%), Positives = 239/466 (51%), Gaps = 41/466 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNR+ K A+V + PG+TRDR Y + N F I+DTAG Sbjct: 4 VAIVGRPNVGKSTLFNRISKDNSALVDDLPGVTRDRNYARVSWNDKPFVIIDTAGFVGQD 63 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + +Q LA++EA ++LF+ D+K G+ P D + LR+ + P+ NK+D Sbjct: 64 TSAFEELTREQILLALDEADILLFVADAKTGLHPGDAELADLLRRSSKPVFYAVNKIDGS 123 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 +R+ E + L I ISA H G SEL + P P + E EES Sbjct: 124 EQRRHAAEFFELGLDRIYPISAAHGFGISELMDDLCAAI----PEAPAQTAE----EEES 175 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 +R++++GRPNVGKSTL+N LLG R++ G TRD+V Sbjct: 176 ----------------GGAIRVSILGRPNVGKSTLVNHLLGAPRVIVSPVPGTTRDAVDS 219 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + DTAG+R+ R E LE+ ++ K++QSV ++LLDA QDL Sbjct: 220 HIVKAGQEYVLIDTAGIRRKGRTREKLEKISIIKALQSVERSHVVVLLLDAVEGVTDQDL 279 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDK-----LNLLQDL--RTKAIKNLPQIGDIYINTIS 357 I + A ++ +NKWD +DK + DL R + + P + T S Sbjct: 280 HIAGYIKERSRACIVGINKWD-AADKDPKRTKRFMDDLHDRFRFLTYAP------VLTFS 332 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLK--YITQ 415 TG + L+ +V E+ + + R+TT +N L++T ++ PP NR RLK Y TQ Sbjct: 333 ALTGRNVARLLPTVKEVFRQYNQRVTTGIVNRALEETLARHEPPQAGNR-RRLKFYYATQ 391 Query: 416 IQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 PP+F++FC +P I SY+RYL NR R F L PIR+ F+ Sbjct: 392 TAVRPPTFVLFCNYPQAIHFSYERYLTNRFREAFGLDKTPIRLIFR 437 >gi|255534810|ref|YP_003095181.1| GTP-binding protein EngA [Flavobacteriaceae bacterium 3519-10] gi|255341006|gb|ACU07119.1| GTP-binding protein EngA [Flavobacteriaceae bacterium 3519-10] Length = 436 Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 151/458 (32%), Positives = 241/458 (52%), Gaps = 29/458 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNR ++++ A+V + G+TRDR YG++ NGV F ++DT G Sbjct: 5 VAIVGRPNVGKSTLFNRFLERREAIVDSTAGVTRDRHYGKSDWNGVEFTVIDTGGYEVNT 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +++ Q +LA++EA I+F+++ + G+T D I LR+ N P+ + NK+D+ Sbjct: 65 EDVFQEEITKQVQLAVDEATSIIFMLNVQDGLTDTDQDIYEMLRRSNKPVYVTINKVDSA 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + E Y L ++ +S+ GT EL I F P E + Sbjct: 125 TDELAATEFYQLGIEKYFTLSSATGSGTGELLDAIVNEFPTTEYKDPFEGL--------- 175 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 PK I + GRPNVGKSTL N LL + + +G TRDS+ Sbjct: 176 PK-------------------ITIAGRPNVGKSTLTNALLDKQQNIVTDVAGTTRDSIQT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 +N H + DTAGMR+ +++ E LE +V +S++S+ + I+++DAT+ +E QD+ Sbjct: 217 LYNKFGHEFVLVDTAGMRRKAKVKEDLEFYSVMRSIRSIEYSDVVIIMVDATLGWESQDM 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDK-LNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 I +V+ +NKWD+V +K N +D + + + Q DI I IS T + Sbjct: 277 NIFGLAQKNRKGIVIVVNKWDLVEEKHTNTTRDFENEIKERIGQFTDIPILFISALTKQR 336 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 + + +E+ + +I TS LN + PPP I +Y ++KY Q+ + P F Sbjct: 337 ILKSVEVAMEVYENRAKKIKTSKLNEVMLPVFEHTPPPAIKGKYVKIKYCVQLPTPSPQF 396 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 + FC P + E+YKR+ N+LR +F +G+PI + F+ Sbjct: 397 VFFCNLPQYVKEAYKRFTENQLRKHFGFTGVPIEVYFR 434 >gi|253682586|ref|ZP_04863383.1| ribosome-associated GTPase EngA [Clostridium botulinum D str. 1873] gi|253562298|gb|EES91750.1| ribosome-associated GTPase EngA [Clostridium botulinum D str. 1873] Length = 438 Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 153/460 (33%), Positives = 240/460 (52%), Gaps = 28/460 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFN+L K++A+V + PG+TRDR+Y QA F I+DT GI Sbjct: 6 VAIVGRPNVGKSTLFNKLAGKRIAIVDDMPGVTRDRIYAQAEWLNNKFTIIDTGGIEPES 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I QM Q ++AI A ++LF++D K G+ D + LRK N I++ NK+D R Sbjct: 66 EDVIVAQMRRQAQMAIEMADVVLFIVDGKQGLADADREVAQMLRKANKSIVLAVNKIDRR 125 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 N YE Y+L + + ISA LG +L + K+P Sbjct: 126 QLDDNIYEFYNLGLGDPMAISASQGLGLGDLLDEVV----DKFPET-------------- 167 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 + ++ +RIA+VGRPNVGKS+LINR+LG + + + G TRDSV Sbjct: 168 ----------NEDDEENEYIRIAMVGRPNVGKSSLINRILGEEKHIVSNIPGTTRDSVDS 217 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + DTAG+R+ S+I E +E+ + +++ S+ + I++LDA +QD Sbjct: 218 YIEREEGKFALIDTAGLRRKSKIKEQVERYSAVRTIASIENADVCILMLDAEQGIAEQDE 277 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 +I+ A+++ +NKWD++ +++ + K L + IS +TG+ + Sbjct: 278 KIIGYAHELNKAIIVIVNKWDLIEKDDKTMKNFKDKLRYELSFLPYASFLFISAKTGQRV 337 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 + ++ E + R+ T LN + K L PP + ++ Y+TQI + PP+F+ Sbjct: 338 NKVLGMAKECYNNYCKRVKTGILNEVISKAILMKEPPVVGTSRLKVYYVTQIGTKPPTFV 397 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 F P + SY+RYL N+LR NF SG I++ F+ K Sbjct: 398 FFVNNPELVHFSYRRYLENQLRENFDFSGTGIKLEFRERK 437 >gi|253576396|ref|ZP_04853726.1| ribosome-associated GTPase EngA [Paenibacillus sp. oral taxon 786 str. D14] gi|251844289|gb|EES72307.1| ribosome-associated GTPase EngA [Paenibacillus sp. oral taxon 786 str. D14] Length = 442 Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 151/455 (33%), Positives = 236/455 (51%), Gaps = 28/455 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 +AIVG PNVGKST+FNR++ ++A+V + PGITRDR+YG + NG F+I+DT GI Sbjct: 7 VVAIVGRPNVGKSTIFNRIIGDRLAIVEDKPGITRDRIYGASEWNGKPFSIIDTGGIELD 66 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 I K + Q ELAI EA +I+F+ D+KAG+T D + + L + P+I+ NK+D Sbjct: 67 DEEPILKSIRMQAELAIEEADVIVFMCDAKAGVTTSDEEVANLLYRSGKPVIVAVNKVDN 126 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 N YE Y+L F E + +S H G +L L+ I +N Sbjct: 127 IGRIDNIYEFYNLGFGEPIGVSGSHGTGIGDL----------------LDAIADNL---- 166 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 E E V +R+A++GRPNVGKS+L+N +LG R++ +G TRD++ Sbjct: 167 --PELADDEYDDDV------IRVALIGRPNVGKSSLVNAILGEERVIVSDIAGTTRDAID 218 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + + DTAGMRK ++ E+ E+ +V ++M+++ + +VL++ +QD Sbjct: 219 TPFEKDGQRYVLIDTAGMRKRGKVYETTEKYSVMRAMKAIERADVVLVLINGEEGIIEQD 278 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 I + G A + +NKWD+V + + + + I +S +T + Sbjct: 279 KHIAGYAYEAGKASIFVVNKWDVVEKDDKTMHQFEQRIRDHFLFMTYAPIVFLSAKTKQR 338 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 L L+ V + R+ T LN + NPPPT R R+ Y+TQ+ PP+ Sbjct: 339 LHKLLPVVQHVADQHAKRVQTHLLNDVVSDAIAINPPPTDKGRRLRINYVTQVAVKPPTI 398 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 ++F P + SY+RYL N++R F G PIR+ Sbjct: 399 VVFVNDPELMHFSYERYLENKIRAAFDFEGTPIRL 433 >gi|156743465|ref|YP_001433594.1| GTP-binding protein EngA [Roseiflexus castenholzii DSM 13941] gi|156234793|gb|ABU59576.1| small GTP-binding protein [Roseiflexus castenholzii DSM 13941] Length = 494 Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 161/477 (33%), Positives = 259/477 (54%), Gaps = 58/477 (12%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTLFNRL+ ++ A+V + PG TRDRLYG NG +F +VDTAG+ + Sbjct: 5 VALVGRPNVGKSTLFNRLIGERRAIVEDIPGTTRDRLYGDTEWNGRVFTVVDTAGLLLDE 64 Query: 65 N--------CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIII 116 + IA+++ +Q ELAI E+ I+F++DS+ G+T D A+ LR+ + P+++ Sbjct: 65 DDLTPGTPQLEIARRVREQAELAIAESDAIIFIVDSREGLTAADAAVAEVLRRTDKPVVL 124 Query: 117 VSNKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIE 176 +NK D N E Y+L+ E + +SA H +G ++ + L ++E Sbjct: 125 AANKADNHERAMNAVEFYALNLGEPIPMSAYHGIGVGDVLDRV---------TEALPVVE 175 Query: 177 NNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSG 236 E +++VK IA+VGRPNVGKS+L+NRL+G R + G Sbjct: 176 -------------MEEDETAVK-------IAIVGRPNVGKSSLLNRLIGQERSVVSDIPG 215 Query: 237 ITRDSVSISWNWKNHPIEI-------FDTAGMRKPSRITESLEQKTVKKSMQSVRTCETT 289 TRDS+ + PIEI DTAG+R+ +I LE+ +V ++++++ + Sbjct: 216 TTRDSI-------DTPIEIGGVRALLIDTAGIRRRGKIDRGLERYSVMRALRAIERADVA 268 Query: 290 IVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM-VSDKLNLLQDLR--TKAIKNLP 346 ++L+DAT QD I + + V + +NKWD+ V D Q R +A K + Sbjct: 269 LLLIDATEGVTAQDTHIAGMILESLKGVAILVNKWDLVVKDAYTFDQFSRHVREAFKFMS 328 Query: 347 QIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIF-N 405 ++ IS +TG+ +D ++ L+I + + RI TS LN+ L++ ++PP + Sbjct: 329 YAPLLF---ISAKTGQRVDKVLPLALDIARNRQRRIPTSELNTLLRRAVYEHPPTAVHKG 385 Query: 406 RYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 + RL Y TQ Q +PP FL F ++ Y RYL NR+R + +G PI++ F++ Sbjct: 386 AHLRLYYATQPQVAPPVFLFFANQAEQVHWGYARYLENRIREQYDFTGTPIKIVFRT 442 >gi|89901081|ref|YP_523552.1| GTP-binding protein EngA [Rhodoferax ferrireducens T118] gi|122479081|sp|Q21W32|DER_RHOFD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|89345818|gb|ABD70021.1| Small GTP-binding protein domain [Rhodoferax ferrireducens T118] Length = 447 Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 158/468 (33%), Positives = 247/468 (52%), Gaps = 30/468 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTLFNRL K + A+V + G+TRDR YG A F ++DT G Sbjct: 5 VALVGRPNVGKSTLFNRLTKSRDAIVADFAGLTRDRHYGNAKQGKHEFIVIDTGGFEPDA 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I K+M QT A+ EA +++F++D++ GI+ DH I +LR+ P ++ +NK + Sbjct: 65 AGGIFKEMAKQTTQAVAEADVVIFVVDAREGISAQDHEIAKYLRRLGKPCVLAANKAEGM 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 +A E + L E+ ISA H G L + P H +E+ +E Sbjct: 125 LAGAQLVEFFELGLGEVHAISAAHGQGIRTLVDLALA------PLH----LEDQDDADEQ 174 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 + I +++AV GRPNVGKSTLIN LG RL+ G TRD++S+ Sbjct: 175 REPGI--------------IKLAVAGRPNVGKSTLINTWLGEERLVAFDLPGTTRDAISV 220 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + E+ DTAG+R+ ++ E++E+ +V K++Q++ + ++L+DAT QD Sbjct: 221 PFERNGQKFELVDTAGLRRRGKVFEAIEKFSVVKTLQAIESSNVVLLLIDATQGVTDQDA 280 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKN-LPQIGDIYINTISGRTGEG 363 I + G AVV+A+NKWD V + ++L ++I+ LP + ++ IS +G Sbjct: 281 HIAGYILENGRAVVIAVNKWDAVDE---YQRELVKRSIETRLPFLKFATMHLISATKRQG 337 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNS-WLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 L L S+ + K +++T L L+ Q Q+P + R +L+Y Q +PP Sbjct: 338 LGPLWASIAQAYKAANCKMSTPILTRLLLEAVQFQSPKRSGMFR-PKLRYAHQGGMNPPV 396 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +I + ++YKR+L R R F L G P+R+ F+SS NPY K Sbjct: 397 IIIHGNSLEHVTDAYKRFLEGRFRKEFDLVGTPMRIEFKSSTNPYADK 444 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 43/124 (34%), Positives = 65/124 (52%), Gaps = 2/124 (1%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 I +A+ G PNVGKSTL N + ++ V + PG TRD + NG F +VDTAG+ Sbjct: 179 IIKLAVAGRPNVGKSTLINTWLGEERLVAFDLPGTTRDAISVPFERNGQKFELVDTAGLR 238 Query: 62 DGKNC--SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 +I K +T AI ++++L LID+ G+T D I ++ + ++I N Sbjct: 239 RRGKVFEAIEKFSVVKTLQAIESSNVVLLLIDATQGVTDQDAHIAGYILENGRAVVIAVN 298 Query: 120 KMDT 123 K D Sbjct: 299 KWDA 302 >gi|71274603|ref|ZP_00650891.1| Small GTP-binding protein domain:GTP-binding [Xylella fastidiosa Dixon] gi|71900907|ref|ZP_00683022.1| Small GTP-binding protein domain:GTP-binding [Xylella fastidiosa Ann-1] gi|170730865|ref|YP_001776298.1| GTP-binding protein EngA [Xylella fastidiosa M12] gi|238687938|sp|B0U489|DER_XYLFM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|71164335|gb|EAO14049.1| Small GTP-binding protein domain:GTP-binding [Xylella fastidiosa Dixon] gi|71729319|gb|EAO31435.1| Small GTP-binding protein domain:GTP-binding [Xylella fastidiosa Ann-1] gi|167965658|gb|ACA12668.1| GTP-binding protein [Xylella fastidiosa M12] Length = 465 Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 155/472 (32%), Positives = 252/472 (53%), Gaps = 31/472 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGV-IFNIVDTAG 59 M+ +A+VG PNVGKSTLFN L + A+V + PG+TRDR YG I+G +F +VDT G Sbjct: 1 MLPLVALVGRPNVGKSTLFNALTLTRDALVHDQPGVTRDRHYGVCRIDGQPLFAVVDTGG 60 Query: 60 IADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 + GK +A Q LA EA ++LF+++ + G + D I ++LRK + P ++V N Sbjct: 61 MV-GKEDGLAGATARQARLAAAEADVVLFVVNVREGASALDDDILAWLRKLSQPTLLVIN 119 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNK 179 K+D E F ++V +SA H G +L + ++ L Sbjct: 120 KIDGVSDTTVHSEFAHYGFSDVVPVSAAHRQGLDDLIEQVLAWLPERSIGEAL------- 172 Query: 180 RNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITR 239 NE+S + + IA VGRPNVGKSTL+NRLLG R++ G TR Sbjct: 173 -NEDSER-----------------IHIAFVGRPNVGKSTLVNRLLGEERMIVSDVPGTTR 214 Query: 240 DSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPF 299 DS+++ + DTAG+R+ S++ E++E+ + K++Q++ C+ ++LLDA Sbjct: 215 DSITVDLERDEFRYRLVDTAGLRRKSKVEEAVEKFSAFKTLQAIEQCQVAVLLLDAGEGV 274 Query: 300 EKQDLRIVDSVFNTGHAVVLALNKWD-MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 QD ++ ++ + G A+V+A+NKWD + + + +DL + + L + + +S Sbjct: 275 TDQDATVLAAILDAGKALVVAMNKWDGLATYQREQAEDLLS---RKLGFVNWAEVVRLSA 331 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 + G GL +L ++ + + +TS +N L+ PPP+I ++L+Y+ S Sbjct: 332 KHGSGLRELFRAIHRAHVSALRQFSTSEVNKALEIAYQTAPPPSIRGYVSKLRYVHPAGS 391 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP+F++ T +P++YKRYL N R F L G P+R F+ NPY K Sbjct: 392 NPPTFIVHGTRLKVLPDTYKRYLENFFRKRFKLVGTPVRFLFREGDNPYEGK 443 >gi|124008576|ref|ZP_01693268.1| GTP-binding protein EngA [Microscilla marina ATCC 23134] gi|123985950|gb|EAY25807.1| GTP-binding protein EngA [Microscilla marina ATCC 23134] Length = 436 Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 154/460 (33%), Positives = 245/460 (53%), Gaps = 33/460 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNRL++++ +++ N G+TRDR+YGQA G F ++DT G G Sbjct: 5 VAIVGRPNVGKSTLFNRLIEQRKSIMDNQSGVTRDRVYGQAEWIGKFFTVIDTGGYVVGS 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +Q E+AI E+ ++LF++D G+T D + LR+ + P+IIV+NK D Sbjct: 65 EDVFEGAIREQVEIAIEESSVVLFVVDCITGLTDLDKDFANVLRRGSKPVIIVANKADNI 124 Query: 125 IAQRNFYEIYSLDFK-EIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + E Y L + +I ISA+ G+ +L + K F + EE Sbjct: 125 EKEYMASEFYQLGLEGDIFPISAQSGSGSGDLLDEVVKHF--------------DDVEEE 170 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 P I +IA+VGRPN GKS+L+N L G R + +G TRDSV+ Sbjct: 171 DPYAGIP--------------KIAIVGRPNAGKSSLVNVLTGKERSIVTDIAGTTRDSVN 216 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + + DTAG+R+ SR+ +++E + ++++S+ + IV++DAT E QD Sbjct: 217 THYKAFGKNFILTDTAGLRRKSRVKDNIEFYSTMRALRSLEASDICIVMVDATRGIEGQD 276 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 + I+ G +V+ +NKWD++ + R + + + YI I G E Sbjct: 277 VNIIGLADKNGKGIVIMVNKWDLIEKDTKTAEKFRKDIAEKIAPM--TYIPIIFGSVLEK 334 Query: 364 --LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 + ++ +E+ +I+TS LN + PPP I +Y R+KY+TQ+ + P Sbjct: 335 QRIFQVVEKAIEVYGNRNQKISTSELNKMMLPEIEHYPPPAIKGKYVRIKYVTQLPTYKP 394 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 +F FC P I ESY+RYL N+LR +F+ G+PI++ F+ Sbjct: 395 TFAFFCNLPQYIKESYQRYLENKLRKHFNFEGVPIQLFFR 434 >gi|148265177|ref|YP_001231883.1| GTP-binding protein EngA [Geobacter uraniireducens Rf4] gi|189037149|sp|A5G692|DER_GEOUR RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|146398677|gb|ABQ27310.1| small GTP-binding protein [Geobacter uraniireducens Rf4] Length = 441 Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 152/465 (32%), Positives = 247/465 (53%), Gaps = 36/465 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTLFNR+V ++ A+V + PG+TRDR Y V F ++DT G Sbjct: 5 IAIVGRPNVGKSTLFNRIVGRRKAMVDDMPGVTRDRNYANVDRFDVPFILIDTGGFEPET 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N + +QM +Q++LA+ EA +ILF++D + G+TP D + LR+ + PI + NK+D Sbjct: 65 NDRLLQQMREQSQLAMAEADVILFVMDGRDGLTPADVEVVEMLRRVDKPIFYLINKIDGD 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + Y+L I +SAEH+ G ++L + K Sbjct: 125 KQETAIGDFYTLGVDTIFTVSAEHNRGVNDLMDEVIKAL--------------------- 163 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 PK S+ + +IAV+GRPNVGKSTL+NRLLG R++ G TRDS+ Sbjct: 164 PK-------GSAADTDEEVTKIAVIGRPNVGKSTLVNRLLGIERVVANPTPGTTRDSIDT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + DTAG+R+ + TE +E+ +V S++S+ + ++++DA +QD Sbjct: 217 YFTCNRKRYLLIDTAGIRRKGKTTEKIEKYSVVDSLRSIERADVVLIVIDAEEGVTEQDT 276 Query: 305 RIVDSVFNTGHAVVLALNKWD-MVSDKLNL---LQDLRTKAIKNLPQIGDIYINTISGRT 360 +I + G + +NKWD + D ++ ++ +R + K LP ++ +S +T Sbjct: 277 KIAGYAYEAGRGCIFVVNKWDTLTKDNASMGKFIEKIRME-FKYLPFAPIVF---VSAKT 332 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G+ L +M V + + + RITTS LN ++ P R + + TQ+ + P Sbjct: 333 GQRLGKIMTEVDAVMEQFARRITTSDLNRVFSTATEEHHAPLYQGRRVKFYFATQVGTKP 392 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 PS +IF P+ + SY+RY++NR R F +G P+R+ F+ ++ Sbjct: 393 PSIVIFTNRPDGVHFSYERYIVNRFREAFGFTGTPMRLLFKGRES 437 >gi|120554059|ref|YP_958410.1| GTP-binding protein EngA [Marinobacter aquaeolei VT8] gi|166225823|sp|A1TZQ4|DER_MARAV RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|120323908|gb|ABM18223.1| small GTP-binding protein [Marinobacter aquaeolei VT8] Length = 473 Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 156/471 (33%), Positives = 248/471 (52%), Gaps = 31/471 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M IA+VG PNVGKSTLFN++ + + A+V + PG+TRDR YG+ G F ++DT G+ Sbjct: 1 MTPVIALVGRPNVGKSTLFNQMTRSRDALVADFPGLTRDRKYGEGNYEGQKFIVIDTGGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 G I +M Q+ A+ EA ++LFL+D +AG+T D I +LRK +V NK Sbjct: 61 T-GDEAGIDAEMARQSMQAVEEADIVLFLVDGRAGLTAGDEMIADYLRKSGKQAHLVVNK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 D + + YSL F+ I+A H+ G L + P +P E+ R Sbjct: 120 TDGQDPDVAAADFYSLGFESTFLIAAAHNRGILSLLEALLP-----EPENP----EDQDR 170 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 + P +RI VVGRPNVGKSTL+NR+LG +R++ G TRD Sbjct: 171 ADRYPG-----------------IRIGVVGRPNVGKSTLVNRMLGEDRVVVYDMPGTTRD 213 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 SV I + + H + DTAG+R+ + E++E+ ++ K++Q++ I+++DA Sbjct: 214 SVYIPYERQGHEYTLIDTAGVRRRKNVREAVEKFSIIKTLQAIDDAHVVILVIDAREGLV 273 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWD-MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGR 359 QDL ++ V + G ++V+A+NKWD M + + +++ + + L YI+ + Sbjct: 274 DQDLHLIGFVLDAGRSLVIAINKWDGMDPEDRDRVKEQVARRLDFLDYADKYYISALH-- 331 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 G G+ + SV + ++ T+ L + LQ Q+ PP + R +L+Y Q S+ Sbjct: 332 -GTGVGTMYESVQACYESAMSKWPTNRLTAILQDAVAQHQPPMVHGRRIKLRYAHQGGSN 390 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 PP ++ + +P +YKRYL N R + G PIR F+S +NP+ K Sbjct: 391 PPVVVVHGNQVDSLPGAYKRYLENTFRKVLKVVGAPIRFEFKSGENPFATK 441 >gi|28199496|ref|NP_779810.1| GTP-binding protein EngA [Xylella fastidiosa Temecula1] gi|182682229|ref|YP_001830389.1| GTP-binding protein EngA [Xylella fastidiosa M23] gi|32129520|sp|Q87B41|DER_XYLFT RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|238691082|sp|B2I7V0|DER_XYLF2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|28057611|gb|AAO29459.1| GTP-binding protein [Xylella fastidiosa Temecula1] gi|182632339|gb|ACB93115.1| small GTP-binding protein [Xylella fastidiosa M23] gi|307578503|gb|ADN62472.1| GTP-binding protein EngA [Xylella fastidiosa subsp. fastidiosa GB514] Length = 465 Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 153/469 (32%), Positives = 251/469 (53%), Gaps = 31/469 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGV-IFNIVDTAG 59 M+ +A+VG PNVGKSTLFN L + A+V + PG+TRDR YG I+G +F +VDT G Sbjct: 1 MLPLVALVGRPNVGKSTLFNALTLTRDALVHDQPGVTRDRHYGVCRIDGQPLFAVVDTGG 60 Query: 60 IADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 + GK +A Q LA+ EA ++LF+++ + G + D I ++LRK + P ++V N Sbjct: 61 MV-GKEDGLAGATARQARLAVAEADVVLFVVNVREGASALDDDILAWLRKLSQPTLLVIN 119 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNK 179 K+D E F ++V +SA H G +L + ++ Sbjct: 120 KIDGVSDTTVHSEFAHYGFSDVVPVSAAHRQGLDDLIEQVLAWLPERSIGEAF------- 172 Query: 180 RNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITR 239 NE+S + + IA VGRPNVGKSTL+NRLLG R++ G TR Sbjct: 173 -NEDSER-----------------IHIAFVGRPNVGKSTLVNRLLGEERMIVSDVPGTTR 214 Query: 240 DSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPF 299 DS+++ + DTAG+R+ S++ E++E+ + K++Q++ C+ ++LLDA Sbjct: 215 DSITVDLERDELRYRLVDTAGLRRKSKVEEAVEKFSAFKTLQAIEQCQVAVLLLDAGEGV 274 Query: 300 EKQDLRIVDSVFNTGHAVVLALNKWD-MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 QD ++ ++ + G A+V+A+NKWD + + + +DL + + L + + +S Sbjct: 275 TDQDATVLAAILDAGKALVVAMNKWDGLATYQREQAEDLLS---RKLGFVNWAEVVRLSA 331 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 + G GL +L ++ + + +TS +N L+ PPP+I ++L+Y+ S Sbjct: 332 KHGSGLRELFRAIHRAHVSALRQFSTSEVNKALEIAYQTAPPPSIRGHVSKLRYVHPAGS 391 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 +PP+F++ T +P++YKRYL N R F L G P+R F+ NPY Sbjct: 392 NPPTFIVHGTRLKVLPDTYKRYLENFFRKRFKLVGTPVRFLFREGDNPY 440 >gi|312143875|ref|YP_003995321.1| ribosome-associated GTPase EngA [Halanaerobium sp. 'sapolanicus'] gi|311904526|gb|ADQ14967.1| ribosome-associated GTPase EngA [Halanaerobium sp. 'sapolanicus'] Length = 438 Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 166/464 (35%), Positives = 249/464 (53%), Gaps = 33/464 (7%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AIVG PNVGKSTLFNRLV + A+V P +TRDR+YG+A FN++DT GI Sbjct: 5 TVAIVGRPNVGKSTLFNRLVGGRRAIVEGEPNVTRDRIYGEAEWLDRTFNVIDTGGIVPR 64 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + I ++ Q ELA+ EA +ILF++DS+ G+T D I L + N +++V NK++ Sbjct: 65 DSDEIKNKIKYQAELAMEEADVILFVVDSRTGMTGIDQEIAQLLYRTNKEVLLVVNKVED 124 Query: 124 RIAQRNF-YEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 Q+ +E YSL F + + ISAEH T EL I + P + + Sbjct: 125 FSNQQEISWEFYSLGFGDPILISAEHGKNTGELLEKI----SAELPEY---------EED 171 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 E +E I IAV+G+PNVGKS+LIN L+G NR++ G TRD+V Sbjct: 172 EDKREAIN---------------IAVIGKPNVGKSSLINHLVGENRVIVSDMPGTTRDAV 216 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 WK+ DTAG+R+ SR+ ES+E + ++++SV + ++++DAT Q Sbjct: 217 DTLIEWKDIKFNFIDTAGLRRKSRVKESIEYYSNLRALKSVDRSDAVLMMIDATKGVSDQ 276 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D +I + G A+V+A+NKWD++ ++ + L + + I IS TGE Sbjct: 277 DKKIAGYAHDEGKAMVIAINKWDLMKKDSKTMKRYTDEVYYELKFLNYVPITYISALTGE 336 Query: 363 GLDDLMVSVLE-INKLWKTRITTSYLNSWL-QKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 +D+ M+S+LE + RI T LN + + QL+ PP R +L Y +Q+ P Sbjct: 337 RIDE-MLSLLEYVVDQSNLRIKTGVLNEVISEAVQLREPPSRKGKRL-KLYYGSQVGVKP 394 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 P+F+ F PN + +Y+RYL N LR F G P+ + K Sbjct: 395 PTFVFFVNDPNLMHFAYQRYLENVLREAFGYVGNPLNFKLKQRK 438 >gi|310642585|ref|YP_003947343.1| gtp-binding protein enga [Paenibacillus polymyxa SC2] gi|309247535|gb|ADO57102.1| GTP-binding protein engA [Paenibacillus polymyxa SC2] Length = 440 Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 152/455 (33%), Positives = 240/455 (52%), Gaps = 30/455 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA-DG 63 +AIVG PNVGKST+FNR++ ++++V + PGITRDR+YG + NG F+I+DT GI DG Sbjct: 6 VAIVGRPNVGKSTIFNRIIGDRLSIVEDKPGITRDRIYGISEWNGKSFSIIDTGGIEIDG 65 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 ++ I K + Q ELAI EA +I+F+ D+KAGIT D + L + PII+ NK+D Sbjct: 66 EDV-ILKSIRMQAELAIEEADVIVFMSDAKAGITQADEEVAQMLYRSGKPIIVAVNKVDN 124 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 YE YS F + + +S H G +L I L +E + +E+ Sbjct: 125 LSRADLIYEFYSYGFGDPIAVSGSHGTGIGDLLDAI---------TSNLPELEEDHYDED 175 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 +R+A++GRPNVGKS+L+N +LG R++ +G TRD++ Sbjct: 176 V-------------------IRVALIGRPNVGKSSLVNAILGEERVIVSDIAGTTRDAID 216 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + + DTAGMRK ++ E+ E+ +V ++M+++ + +V+++ +QD Sbjct: 217 TPFEKDGQKYVLIDTAGMRKRGKVYETTEKYSVMRAMRAIERADVVLVVINGEEGIIEQD 276 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 I + G A + +NKWD+V + TK + + I +S +T + Sbjct: 277 KHIAGYAYEAGKASLFVVNKWDVVDKDDKTMHQFETKIRDHFLFMTYAPIVFLSAKTKQR 336 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 L L+ V + + RI T LN + NPPPT R R+ Y+TQ+ PP+ Sbjct: 337 LQKLLPVVQHVAQQHVMRIQTHLLNDVISDAVAINPPPTDKGRRLRINYVTQVAVKPPTM 396 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 ++F P + SY+RYL N++R F+ G PIR+ Sbjct: 397 VVFVNDPEIMHFSYERYLENKIRAAFNFEGTPIRI 431 >gi|88802177|ref|ZP_01117705.1| GTP-binding protein EngA [Polaribacter irgensii 23-P] gi|88782835|gb|EAR14012.1| GTP-binding protein EngA [Polaribacter irgensii 23-P] Length = 436 Score = 267 bits (683), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 158/457 (34%), Positives = 244/457 (53%), Gaps = 27/457 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNRLV+++ A+V + G+TRDR YG++ NG F+++DT G + G Sbjct: 5 VAIVGRPNVGKSTLFNRLVQRRDAIVDSVSGVTRDRHYGKSDWNGKEFSVIDTGGYSIGS 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +++ Q LAI EA +I+F++D + GITP D + LRK PI + NK+D Sbjct: 65 DDIFEEEIRKQVTLAIEEADIIVFVVDVEEGITPMDAEVAKILRKIKKPIFVTVNKVDNA 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + N E Y+L IS+ + GT +L I K P + Sbjct: 125 MRDANAVEFYNLGLGGYHTISSINGSGTGDLLDAI----AAKMP---------------A 165 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P+ ++ + P R AVVGRPN GKS+ IN L+G +R + + +G TRDS+ Sbjct: 166 PE-------AVDLEQVELP-RFAVVGRPNAGKSSFINALIGKDRNIVTNIAGTTRDSIDT 217 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 +N + DTAG+RK S++ E LE +V ++++S+ + I+++DAT FE QD Sbjct: 218 KYNRFGFDFNLVDTAGIRKKSKVKEDLEFYSVMRAVRSIEYADVIILVVDATRGFEGQDQ 277 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 I V++ +NKWD+V + N ++D K + DI I S T + + Sbjct: 278 SIFWLAEKNRKGVIILINKWDLVEKETNTMRDFEAMVRKQVAPFTDIPIIFTSVLTKQRI 337 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 + S +E+ + K +I TS LN + PPP I ++ ++KY Q+ + P F Sbjct: 338 YKAIESAVEVFERRKFKIATSKLNDVMLDVIKSYPPPAIKGKFVKIKYCMQLPTLTPQFA 397 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 FC P + E YKR+L N+LR + G+PI + F+ Sbjct: 398 FFCNLPQYVREPYKRFLENKLRDLYDFCGVPITIYFR 434 >gi|264679419|ref|YP_003279326.1| small GTP-binding protein [Comamonas testosteroni CNB-2] gi|262209932|gb|ACY34030.1| small GTP-binding protein [Comamonas testosteroni CNB-2] Length = 446 Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 155/471 (32%), Positives = 249/471 (52%), Gaps = 35/471 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTLFNRL K + A+V + G+TRDR YGQ + ++DT G Sbjct: 5 IALVGRPNVGKSTLFNRLTKSRDAIVADFAGLTRDRHYGQGRQGKHEYIVIDTGGFEPDA 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + I K+M QT+ A+ EA +++F++D++AG++ DH I ++LR+ P I+V+NK + Sbjct: 65 SRGIFKEMAKQTQQAVAEADVVIFVLDARAGLSGQDHEIGNYLRRLGKPTILVANKAEGM 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 E Y L E+V +SA H G L + N Sbjct: 125 KDGVQLSEFYELGLGEVVPVSAAHGQGVRSLVDAALGLL-----------------NLPE 167 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P++ + E KP+R+AV GRPN GKSTLIN LG RL+ G TRD++++ Sbjct: 168 PEDEVFGE------EDQKPVRLAVAGRPNAGKSTLINTWLGEERLVAFDMPGTTRDAITV 221 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + E+ DTAG+R+ ++ E++E+ +V K++Q++ ++L+DAT QD Sbjct: 222 PFERNGQKFELIDTAGLRRKGKVFEAIEKFSVVKTLQAIEGANVVLLLIDATQGVTDQDA 281 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSD-KLNLLQ---DLRTKAIKNLPQIGDIYINTISGRT 360 I + +G +VVL +NKWD V D + +L+ + R +K P ++ IS + Sbjct: 282 HIAGYILESGRSVVLGINKWDAVDDYQRQMLERSIETRLSFLKFAP------LHFISAQK 335 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKT-QLQNPPPTIFNRYNRLKYITQIQSS 419 +GL+ L S+++ ++ ++ T L L ++ Q Q P R +++Y Q + Sbjct: 336 RQGLEPLWKSIIQAHRAATCKMPTPVLTRILMESIQFQTPKKVGAYR-PKMRYAHQGGMN 394 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 PP +I + ++YKR+L R R F+L G P+R+ ++S NPY K Sbjct: 395 PPIIVIHGNSLELVTDAYKRFLEGRFRKEFNLVGTPLRIDLKTSHNPYADK 445 >gi|307822499|ref|ZP_07652730.1| ribosome-associated GTPase EngA [Methylobacter tundripaludum SV96] gi|307736103|gb|EFO06949.1| ribosome-associated GTPase EngA [Methylobacter tundripaludum SV96] Length = 465 Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 167/469 (35%), Positives = 246/469 (52%), Gaps = 34/469 (7%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ IA+VG PNVGKSTLFN L + + A+V + G+TRDR YG+ + +VDT GI Sbjct: 1 MLPVIALVGRPNVGKSTLFNYLTRSRDALVADFSGLTRDRQYGRVKLGDRPCLVVDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 AD I Q ++A+ EA ++ F++D++ G++ D I LRK P+I+V+NK Sbjct: 61 ADDAE-GIESFARKQVQVALEEADIVFFMVDAREGLSASDKVIADTLRKLQKPVILVTNK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D A + YSL E V+I+A H G EL LE K Sbjct: 120 VDGLDASTAASDFYSLALGEPVKIAASHGKGIPEL----------------LE-----KV 158 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 N+ P + K V+ + IAVVGRPNVGKSTL+NRLLG R++ + G TRD Sbjct: 159 NQLLPPD------KGEVEEAHSGIGIAVVGRPNVGKSTLVNRLLGEERVIVFDEPGTTRD 212 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ I + + DTAGMR+ S+I E++E+ +V KS+Q++ I L+DA Sbjct: 213 SIYIPFERNGKKFTLIDTAGMRRRSKIAETIEKFSVIKSLQAIEKANVVIYLIDAREGIT 272 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVS--DKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 QD ++ V G A+++ LNKWD +S K + + L K L + + IS Sbjct: 273 DQDAHLLGLVLEAGRALIIGLNKWDGISADQKATIHRQLDVK----LSFLEFAEKHPISA 328 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 G G+ + V ++ ++T L L++ + PP + +R +LKY Q Sbjct: 329 LHGSGVGKMFDVVQQLYAAAMLDMSTPVLTRILKEATTAHQPPIVNSRRVKLKYAHQGGR 388 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 +PP +I + +PESYKRYLIN R L G PIR+ F+S+ NP+ Sbjct: 389 NPPIVVIHGVQTDSLPESYKRYLINYYRDKMGLVGTPIRLVFKSAVNPF 437 >gi|241764499|ref|ZP_04762520.1| small GTP-binding protein [Acidovorax delafieldii 2AN] gi|241366083|gb|EER60680.1| small GTP-binding protein [Acidovorax delafieldii 2AN] Length = 462 Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 152/467 (32%), Positives = 245/467 (52%), Gaps = 28/467 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTLFNRL K + A+V + G+TRDR YG + ++DT G Sbjct: 20 IALVGRPNVGKSTLFNRLTKSRDAIVADFAGLTRDRHYGNGKQGKHEYIVIDTGGFEPDA 79 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + I ++M QT+ A+ EA +++F++D++AG++ DH I ++LR+ P ++V+NK + Sbjct: 80 SSGIYREMAKQTQQAVAEADVVIFVVDARAGVSAQDHDIANYLRRLGKPCVLVANKAEGM 139 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + E Y L E+ +SA H G L + + PL + E + + + Sbjct: 140 LQGGQLAEFYELGLGEVYPVSAAHGQGIRGLVDLALE---------PLHLPEPDDAEQAA 190 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 K I ++AV GRPNVGKSTLIN LG RL+ G TRD++++ Sbjct: 191 DKGTI---------------KLAVAGRPNVGKSTLINTWLGEERLVAFDMPGTTRDAITV 235 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + E+ DTAG+R+ ++ E++E+ +V K++Q++ + ++LLDAT QD Sbjct: 236 PFERNGQRFELVDTAGLRRKGKVFEAIEKFSVVKTLQAIESANVVLLLLDATQGVTDQDA 295 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 I + +G AVVLA+NKWD V + L L L + ++ IS + +GL Sbjct: 296 HIAGYILESGRAVVLAVNKWDAVDEYQRQL--LERSIETRLAFLKFAALHFISAKKRQGL 353 Query: 365 DDLMVSVLEINKLWKTRITTSYLNS-WLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 L S+++ +K +++T L L+ Q Q P R +++Y Q +PP Sbjct: 354 GPLWASIVQAHKAATCKMSTPVLTRLLLEAVQFQTPKRAGMFR-PKMRYAHQGGMNPPVI 412 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +I + ++YKR+L R R F L G P+R+ ++S NP+ K Sbjct: 413 VIHGNSLEHVTDAYKRFLEGRFRKEFDLVGTPLRIEMKTSHNPFADK 459 >gi|294791776|ref|ZP_06756924.1| ribosome-associated GTPase EngA [Veillonella sp. 6_1_27] gi|294793637|ref|ZP_06758774.1| ribosome-associated GTPase EngA [Veillonella sp. 3_1_44] gi|294455207|gb|EFG23579.1| ribosome-associated GTPase EngA [Veillonella sp. 3_1_44] gi|294457006|gb|EFG25368.1| ribosome-associated GTPase EngA [Veillonella sp. 6_1_27] Length = 444 Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 162/467 (34%), Positives = 255/467 (54%), Gaps = 40/467 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTLFN +V K++++V + PG+TRDR+Y A F ++DT GI Sbjct: 6 VAVVGRPNVGKSTLFNAIVNKRISIVEDIPGVTRDRIYFDAEWLNREFTMIDTGGIEFIT 65 Query: 65 NCS--IAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + S I K M Q ELAI EA +ILF++D K GI P D + + LR P+++V NK+D Sbjct: 66 DNSHVIPKMMRLQAELAIEEADVILFVVDGKQGIVPADEEVANILRASGKPVVLVVNKID 125 Query: 123 TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 + + N YE Y+L + + ISA++ + +L K F + N +E Sbjct: 126 SVNQEPNIYEFYNLGLGDPIGISAKNLMNLGDLLDDTVKHFPP---------VGTNVDDE 176 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 ++ + +A++GRPNVGKS+L N LLG +R++ +G TRDS+ Sbjct: 177 DT-------------------IHVAIIGRPNVGKSSLTNALLGQDRVIVSDVAGTTRDSI 217 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 W +N + DTAGMR+ S+I E++E+ ++ +S++SV + +++LDA +Q Sbjct: 218 DTYWTHENQKFVLIDTAGMRRKSKIEEAVERYSIVRSLRSVDRADIVVLVLDAQDGVTEQ 277 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMV--SDK--LNLLQDLRTKAIKNLPQIGDI-YINTIS 357 D +I + G VV+ +NKWD+V DK L +D+ + Q I + + ++ Sbjct: 278 DKKIAGYAYEAGKGVVIVVNKWDLVEKDDKTTLRFTEDIYDEL--GFLQFAPILFASALT 335 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 + L D++ V E + ++ R++T LN LQ Q NP P+ R ++ Y+TQ Sbjct: 336 KQRIHRLADMLKFVSE--QQYR-RVSTGTLNQLLQDAQTVNPVPSRNGRIPKIYYMTQAS 392 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 PP+F++F P I SY R+L NRLR +F G PIR+ + K Sbjct: 393 VKPPTFILFVNEPELIHFSYMRFLENRLRESFGFEGTPIRLVLRGKK 439 >gi|313114942|ref|ZP_07800438.1| ribosome-associated GTPase EngA [Faecalibacterium cf. prausnitzii KLE1255] gi|310622735|gb|EFQ06194.1| ribosome-associated GTPase EngA [Faecalibacterium cf. prausnitzii KLE1255] Length = 447 Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 153/456 (33%), Positives = 241/456 (52%), Gaps = 31/456 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTLFN+L +++A+V + PGITRDR++ NG F +VDT GI Sbjct: 6 VAVVGRPNVGKSTLFNKLCGQRLAIVEDTPGITRDRIFANCEWNGHDFLLVDTGGIEPKA 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD-T 123 I M +Q ++AI+ A I+ ++D + G+T D + LR+ + PII+ NK D Sbjct: 66 TEGILAHMREQAQIAIDTADCIIMVVDVRDGLTAADEDVAHMLRRSHKPIILAVNKCDKV 125 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 A YE Y+L F E++ IS+ H GT +L + L+ E + Sbjct: 126 GDAPMEMYEFYNLGFDEVMPISSVHGHGTGDLLDAVCA---------HLDFSETVVEEDR 176 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 P +A++GRPNVGKS+L NR+LG NR++ +++G TRD++ Sbjct: 177 IP--------------------VAIIGRPNVGKSSLTNRILGENRMIVANEAGTTRDAID 216 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + DTAG+RK S IT+ LE+ V +++ +V ++L+DAT+ F +QD Sbjct: 217 TPVDNAYGKFIFTDTAGLRKRSNITDGLERYMVVRALAAVERSRVALILVDATVGFTEQD 276 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDK-LNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 ++ + G A ++ +NKWD V K N ++ R + +G I IS +TG Sbjct: 277 SKVAGYAHDQGKACIIVVNKWDAVEGKETNTMELQRRDYAECFSFMGYAPIIFISAQTGY 336 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 ++ LM + +++ R+ T LN L + + PP+ R ++ Y+TQ + PP+ Sbjct: 337 NVNKLMQLIRDVDSQNGARVPTGVLNEMLARATARMQPPSDKGRRLKIFYLTQASTRPPT 396 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 F+ F SY+RYLIN++R NF L PIR+ Sbjct: 397 FVAFVNSKQLFHFSYQRYLINQIRENFGLEHTPIRL 432 >gi|308069529|ref|YP_003871134.1| GTP-binding protein engA [Paenibacillus polymyxa E681] gi|305858808|gb|ADM70596.1| GTP-binding protein engA [Paenibacillus polymyxa E681] Length = 440 Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 152/455 (33%), Positives = 240/455 (52%), Gaps = 30/455 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA-DG 63 +AIVG PNVGKST+FNR++ ++++V + PGITRDR+YG + NG F+I+DT GI DG Sbjct: 6 VAIVGRPNVGKSTIFNRIIGDRLSIVEDKPGITRDRIYGISEWNGKSFSIIDTGGIEIDG 65 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 ++ I K + Q ELAI EA +I+F+ D+KAGIT D + L + PII+ NK+D Sbjct: 66 EDV-ILKSIRMQAELAIEEADVIVFMSDAKAGITQSDEEVAQMLYRSGKPIIVAVNKVDN 124 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 YE YS F + + +S H G +L I L +E + +E+ Sbjct: 125 LSRADLIYEFYSYGFGDPIAVSGSHGTGIGDLLDAI---------TSNLPELEEDHYDED 175 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 +R+A++GRPNVGKS+L+N +LG R++ +G TRD++ Sbjct: 176 V-------------------IRVALIGRPNVGKSSLVNAILGEERVIVSDIAGTTRDAID 216 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + + DTAGMRK ++ E+ E+ +V ++M+++ + +V+++ +QD Sbjct: 217 TPFEKDGQKYVLIDTAGMRKRGKVYETTEKYSVMRAMRAIERADVVLVVINGEEGIIEQD 276 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 I + G A + +NKWD+V + TK + + I +S +T + Sbjct: 277 KHIAGYAYEAGKASLFVVNKWDVVDKDDKTMHQFETKIRDHFLFMTYAPIVFLSAKTKQR 336 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 L L+ V + + RI T LN + NPPPT R R+ Y+TQ+ PP+ Sbjct: 337 LQKLLPVVQHVAQQHVLRIQTHLLNDVISDAVAINPPPTDKGRRLRINYVTQVAVKPPTM 396 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 ++F P + SY+RYL N++R F+ G PIR+ Sbjct: 397 VVFVNDPEIMHFSYERYLENKIRAAFNFEGTPIRI 431 >gi|189425185|ref|YP_001952362.1| GTP-binding protein EngA [Geobacter lovleyi SZ] gi|238692111|sp|B3E421|DER_GEOLS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|189421444|gb|ACD95842.1| small GTP-binding protein [Geobacter lovleyi SZ] Length = 449 Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 153/460 (33%), Positives = 236/460 (51%), Gaps = 29/460 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNR+V ++ A+V + PG+TRDR Y F +VDT G Sbjct: 5 VAIVGRPNVGKSTLFNRIVGERRAIVDDMPGVTRDRNYAVVERYDKPFILVDTGGFEPVT 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +QM +Q+ LA+ EA +ILFL+D+K G+TP D+ + S LR+ + P+ V NK+D Sbjct: 65 EDRMLQQMREQSLLAMEEADVILFLMDAKQGLTPADNEVASMLRRVDKPVFYVVNKVDGE 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + E Y+L + ISA H+ G +L I + P+ PL Sbjct: 125 KVENEAAEFYALGIDNMHTISAAHNRGIRDLLDEIMALL----PDEPLP----------- 169 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 G+ V NI AVVGRPNVGKS+L+NRLLG+ R++ +G TRDSV Sbjct: 170 --------GEDEVTNI------AVVGRPNVGKSSLVNRLLGFERVVANPVAGTTRDSVDT 215 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + DTAG+R+ + ++ LE+ +V +++S+ + +++L+A +QD Sbjct: 216 FFTCNKKRYCLIDTAGIRRKGKTSQKLEKYSVVDALKSIERADVALIVLNAEDGITEQDK 275 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 I V+ G A V +NKWD + + + + I +S RTG+ + Sbjct: 276 HIAGYVYEAGRACVFVVNKWDTLEKDNKTIGKFVEQIQYEFKFLAFAPIVFVSARTGQRI 335 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 +M E+ + + R+TTS LN ++ + P R + + TQ+ PP+F Sbjct: 336 HKVMEEAAEVAEQYSRRVTTSELNRVFKEAVEAHHAPLHHARRVKFYFATQVGVKPPTFA 395 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 IF P+ + Y+RYL NR R F G P R+ F+ + Sbjct: 396 IFTNQPDGVLTPYQRYLGNRFRDAFGFKGTPFRLLFRGRE 435 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 49/156 (31%), Positives = 76/156 (48%), Gaps = 11/156 (7%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI- 60 + IA+VG PNVGKS+L NRL+ + V G TRD + N + ++DTAGI Sbjct: 174 VTNIAVVGRPNVGKSSLVNRLLGFERVVANPVAGTTRDSVDTFFTCNKKRYCLIDTAGIR 233 Query: 61 ADGKNCSIAKQMNDQTEL-AINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 GK ++ + L +I A + L +++++ GIT D I ++ + + V N Sbjct: 234 RKGKTSQKLEKYSVVDALKSIERADVALIVLNAEDGITEQDKHIAGYVYEAGRACVFVVN 293 Query: 120 KMDT---------RIAQRNFYEIYSLDFKEIVEISA 146 K DT + ++ YE L F IV +SA Sbjct: 294 KWDTLEKDNKTIGKFVEQIQYEFKFLAFAPIVFVSA 329 >gi|332982413|ref|YP_004463854.1| ribosome-associated GTPase EngA [Mahella australiensis 50-1 BON] gi|332700091|gb|AEE97032.1| ribosome-associated GTPase EngA [Mahella australiensis 50-1 BON] Length = 437 Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 150/461 (32%), Positives = 252/461 (54%), Gaps = 29/461 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AI+G PNVGKSTLFNRLV +++++V + PGITRDR+Y G IF++VDT GI Sbjct: 5 TVAIIGRPNVGKSTLFNRLVGRRISIVDDTPGITRDRIYADVEWTGKIFSLVDTGGIDFS 64 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 SI QM Q + AI+ A +IL ++D+ G+T D + LR+ N +++V NK+D Sbjct: 65 GKDSIVNQMIRQAQYAIDTADVILLVVDANEGMTSADEEVADILRRSNKSVLLVCNKVDN 124 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + Y+ Y L + + ISA + LG +L I + N +++I+ EE Sbjct: 125 FNRKDLLYDFYKLGLGDPIPISAGNGLGIGDLLDKIV-----AHINVSVDIID-----EE 174 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 + +RIAV+G+PN GKS+++NRLLG R++ Q G TRD++ Sbjct: 175 T-------------------IRIAVIGKPNAGKSSIVNRLLGQERVIVSDQPGTTRDAID 215 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + + + DTAG+R+ ++I E++E+ +V +++++V+ + +++DA +QD Sbjct: 216 VLIEHEGDRYILIDTAGLRRKAKINEAVERYSVSRALEAVQRSDVAALVIDAVEGVTEQD 275 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 +I G +++ LNKWD++ + + + L IG + IS +TG+ Sbjct: 276 AKIAGFAHEKGKGLIVLLNKWDLIEKDNKTVSRYKQDIAEKLGFIGYAPVLFISAKTGQR 335 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 +D ++ V + + RI+T LN +++ + PP+ R ++ Y TQ+ PP+F Sbjct: 336 MDKILPMVKYVFEQSSMRISTGVLNDVIREAVAISAPPSSKGRSLKIYYATQVAVRPPTF 395 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 ++F + SY+RYL N LR NF G PIR+ ++ K Sbjct: 396 VLFVNDTELMHFSYERYLENYLRRNFGFEGTPIRIAVRARK 436 >gi|254521460|ref|ZP_05133515.1| GTP-binding protein [Stenotrophomonas sp. SKA14] gi|219719051|gb|EED37576.1| GTP-binding protein [Stenotrophomonas sp. SKA14] Length = 465 Score = 266 bits (681), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 163/472 (34%), Positives = 254/472 (53%), Gaps = 31/472 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIIN-GVIFNIVDTAG 59 M+ +A+VG PNVGKST+FN L + + A+V + PG+TRDR YG ++ F +VDT G Sbjct: 1 MLPLVALVGRPNVGKSTIFNALTRTRDALVHDQPGVTRDRNYGVCRLDEDNHFLVVDTGG 60 Query: 60 IADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 IA+ + +A Q A EA LILF++D++ G + D I ++LRK + P +++ N Sbjct: 61 IAE-EEEGLAGATTRQARAAAAEADLILFVVDAREGTSAMDDEILAWLRKLSRPTLLLIN 119 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNK 179 K+D E F E++ +SA H G +L + Q+ P Sbjct: 120 KIDGTDEDSVRSEFARYGFGEMLTVSAAHRQGLDDLLDEVI----QRLP----------- 164 Query: 180 RNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITR 239 EE E + N +RIA VGRPNVGKSTL+NR+LG R++ G TR Sbjct: 165 --EEGSGEEL--------DNDPNRIRIAFVGRPNVGKSTLVNRILGEERMIASDVPGTTR 214 Query: 240 DSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPF 299 DS+++ + DTAG+R+ SR+ E +E+ +V K+MQS+ C+ +++LDAT Sbjct: 215 DSIAVDLERDGREYRLIDTAGLRRRSRVDEVVEKFSVVKTMQSIEQCQVAVLMLDATEGV 274 Query: 300 EKQDLRIVDSVFNTGHAVVLALNKWDMVSD-KLNLLQDLRTKAIKNLPQIGDIYINTISG 358 QD ++ +V + G A+V+A+NKWD +++ + + L + + +P + IS Sbjct: 275 TDQDATVLGAVLDAGRALVIAINKWDGLTEYQREQAETLLSLKLGFVPWAESV---RISA 331 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 + G GL +L +V ++ TTS +N L+ NPPPTI ++L+Y+ + Sbjct: 332 KHGSGLRELFRAVHRAHESANKTFTTSEVNKALEVAYETNPPPTIRGHVSKLRYVHPAGA 391 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP+F++ T ++ ESYKRYL N R F L G P+ F+ NPY K Sbjct: 392 NPPTFIVHGTRLKELQESYKRYLENFFRKRFKLIGTPVSFIFREGTNPYEGK 443 >gi|91788466|ref|YP_549418.1| GTP-binding protein EngA [Polaromonas sp. JS666] gi|123355649|sp|Q12AC2|DER_POLSJ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|91697691|gb|ABE44520.1| Small GTP-binding protein domain [Polaromonas sp. JS666] Length = 447 Score = 266 bits (681), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 159/469 (33%), Positives = 249/469 (53%), Gaps = 32/469 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKST+FNRL K + A+V + G+TRDR YG + + ++DT G Sbjct: 5 IALVGRPNVGKSTIFNRLTKTRDAIVADFAGLTRDRHYGNGKLGSHEYIVIDTGGFEPDA 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I K+M QT A+ EA +++F++D++AGI+ DH I +FLRK P ++ +NK + Sbjct: 65 ASGIYKEMAKQTRQAVAEADVVIFVVDARAGISAQDHDIANFLRKLGKPTVLTANKAEGM 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 F E + L E++ +SA H G L + PL + + ++ E Sbjct: 125 TEGVQFSEFFELGLGEVLPVSASHGQGMRSLVDLALA---------PLHLADPDE--EAE 173 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P++ SV +R+AV GRPNVGKSTLIN LG RL++ G TRD++S+ Sbjct: 174 PQD-------PSV------IRLAVAGRPNVGKSTLINTWLGEERLVSFDLPGTTRDAISV 220 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + E+ DTAG+R+ ++ E++E+ +V K++Q++ ++LLDAT QD Sbjct: 221 PFERAGQKFELIDTAGLRRKGKVFEAIEKFSVVKTLQAIEGANVVLLLLDATQGVTDQDA 280 Query: 305 RIVDSVFNTGHAVVLALNKWDMVS--DKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 I + +G AVVLA+NKWD V + L + + T+ L + I+ IS + Sbjct: 281 HIAGYILESGRAVVLAINKWDAVDAYQRETLERSIETR----LAFLKFASIHKISAIKRQ 336 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNS-WLQKTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 GL + S+++ + +++T L L+ Q Q P + R +++Y Q +PP Sbjct: 337 GLAPVWKSIVQAHASANRKMSTPVLTRLLLEAVQFQQPQRSGMFR-PKMRYAHQGGMNPP 395 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +I + E+YKRYL R R F L G P+R+ +SS NP+ K Sbjct: 396 IIIIHGNSLEHVTEAYKRYLEGRFRKEFDLVGTPMRIQMKSSHNPFTDK 444 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/154 (31%), Positives = 76/154 (49%), Gaps = 9/154 (5%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + +A+ G PNVGKSTL N + ++ V + PG TRD + G F ++DTAG+ Sbjct: 179 VIRLAVAGRPNVGKSTLINTWLGEERLVSFDLPGTTRDAISVPFERAGQKFELIDTAGLR 238 Query: 62 DGKNC--SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 +I K +T AI A+++L L+D+ G+T D I ++ + +++ N Sbjct: 239 RKGKVFEAIEKFSVVKTLQAIEGANVVLLLLDATQGVTDQDAHIAGYILESGRAVVLAIN 298 Query: 120 KMDTRIA-QRNFYE------IYSLDFKEIVEISA 146 K D A QR E + L F I +ISA Sbjct: 299 KWDAVDAYQRETLERSIETRLAFLKFASIHKISA 332 >gi|326316284|ref|YP_004233956.1| ribosome-associated GTPase EngA [Acidovorax avenae subsp. avenae ATCC 19860] gi|323373120|gb|ADX45389.1| ribosome-associated GTPase EngA [Acidovorax avenae subsp. avenae ATCC 19860] Length = 447 Score = 266 bits (681), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 148/464 (31%), Positives = 240/464 (51%), Gaps = 28/464 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTLFNRL K + A+V + G+TRDR YG + + ++DT G Sbjct: 5 IALVGRPNVGKSTLFNRLTKSRDAIVADFAGLTRDRHYGNGKLGKHEYIVIDTGGFEPDA 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + I ++M QT+ A+ EA +++F++D++AG++ DH I ++LR+ P ++V NK + Sbjct: 65 SSGIYREMAKQTQQAVAEADVVIFVVDARAGLSAQDHDIANYLRRLGKPCLLVGNKAEGM 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 E Y L E++ +SA H G L + + Sbjct: 125 REGAQLAEFYELGLGEVLPVSAAHGQGVRSLLETALETLQ-------------------- 164 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 + KP+R+AV GRPNVGKSTLIN LG RL+ G TRD++S+ Sbjct: 165 ----LPEPEDEPEDGEDKPIRLAVAGRPNVGKSTLINTWLGEERLVAFDMPGTTRDAISV 220 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + E+ DTAG+R+ ++ E++E+ +V K++Q++ + ++LLDAT QD Sbjct: 221 PFERNGQQFELIDTAGLRRKGKVFEAIEKFSVVKTLQAIESANVVLLLLDATQGVTDQDA 280 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 I + +G AVVLA+NKWD V D + + + + + ++ IS + +GL Sbjct: 281 HIAGYILESGRAVVLAVNKWDAVDDYGRQMLERSIETRLSFLKFASLHF--ISAKKRQGL 338 Query: 365 DDLMVSVLEINKLWKTRITTSYLNS-WLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 L S+ + +K ++ T L L+ Q Q P + R +++Y Q +PP Sbjct: 339 GPLWTSIAQAHKSATCKMPTPVLTRLLLEAVQFQTPKRSGMFR-PKMRYAHQGGMNPPVI 397 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 +I + ++YKR+L R R F+L G P+R+ ++S NP+ Sbjct: 398 VIHGNSLEHVTDAYKRFLEGRFRKEFNLVGTPLRIEMKTSHNPF 441 >gi|282848929|ref|ZP_06258319.1| ribosome-associated GTPase EngA [Veillonella parvula ATCC 17745] gi|282581434|gb|EFB86827.1| ribosome-associated GTPase EngA [Veillonella parvula ATCC 17745] Length = 444 Score = 266 bits (681), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 162/467 (34%), Positives = 254/467 (54%), Gaps = 40/467 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTLFN +V K++++V + PG+TRDR+Y A F ++DT GI Sbjct: 6 VAVVGRPNVGKSTLFNAIVNKRISIVEDIPGVTRDRIYFDAEWLNREFTMIDTGGIEFIT 65 Query: 65 NCS--IAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 S I K M Q ELAI EA +ILF++D K GI P D + + LR P+++V NK+D Sbjct: 66 ENSHVIPKMMRLQAELAIEEADVILFVVDGKQGIVPADEEVANILRASGKPVVLVVNKID 125 Query: 123 TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 + + N YE Y+L + + ISA++ + +L K F + N +E Sbjct: 126 SVNQEPNIYEFYNLGLGDPIGISAKNLMNLGDLLDDTVKHFPP---------VGTNVDDE 176 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 ++ + +A++GRPNVGKS+L N LLG +R++ +G TRDS+ Sbjct: 177 DT-------------------IHVAIIGRPNVGKSSLTNALLGQDRVIVSDVAGTTRDSI 217 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 W +N + DTAGMR+ S+I E++E+ ++ +S++SV + +++LDA +Q Sbjct: 218 DTYWTHENQKFVLIDTAGMRRKSKIEEAVERYSIVRSLRSVDRADIVVLVLDAQDGVTEQ 277 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMV--SDK--LNLLQDLRTKAIKNLPQIGDI-YINTIS 357 D +I + G VV+ +NKWD+V DK L +D+ + Q I + + ++ Sbjct: 278 DKKIAGYAYEAGKGVVIVVNKWDLVEKDDKTTLRFTEDIYDEL--GFLQFAPILFASALT 335 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 + L D++ V E + ++ R++T LN LQ Q NP P+ R ++ Y+TQ Sbjct: 336 KQRIHRLADMLKFVSE--QQYR-RVSTGTLNQLLQDAQTVNPVPSRNGRIPKIYYMTQAS 392 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 PP+F++F P I SY R+L NRLR +F G PIR+ + K Sbjct: 393 VKPPTFILFVNEPELIHFSYMRFLENRLRESFGFEGTPIRLVLRGKK 439 >gi|71898142|ref|ZP_00680328.1| Small GTP-binding protein domain:GTP-binding [Xylella fastidiosa Ann-1] gi|71732116|gb|EAO34172.1| Small GTP-binding protein domain:GTP-binding [Xylella fastidiosa Ann-1] Length = 465 Score = 266 bits (681), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 153/469 (32%), Positives = 250/469 (53%), Gaps = 31/469 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGV-IFNIVDTAG 59 M+ +A+VG PNVGKSTLFN L + A+V + PG+TRDR YG I+G +F +VDT G Sbjct: 1 MLPLVALVGRPNVGKSTLFNALTLTRDALVHDQPGVTRDRHYGVCRIDGQPLFAVVDTGG 60 Query: 60 IADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 + GK +A Q LA EA ++LF+++ + G + D I ++LRK + P ++V N Sbjct: 61 MV-GKEDGLAGATARQARLAAAEADVLLFVVNVREGASALDDDILAWLRKLSQPTLLVIN 119 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNK 179 K+D E F ++V +SA H G +L + ++ Sbjct: 120 KIDGVSDTTVHSEFAHYGFSDVVPVSAAHRQGLDDLIEQVLAWLPERSIGEAF------- 172 Query: 180 RNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITR 239 NE+S + + IA VGRPNVGKSTL+NRLLG R++ G TR Sbjct: 173 -NEDSER-----------------IHIAFVGRPNVGKSTLVNRLLGEERMIVSDVPGTTR 214 Query: 240 DSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPF 299 DS+++ + DTAG+R+ S++ E++E+ + K++Q++ C+ ++LLDA Sbjct: 215 DSITVDLERDEFRYRLVDTAGLRRKSKVEEAVEKFSAFKTLQAIEQCQVAVLLLDAGEGV 274 Query: 300 EKQDLRIVDSVFNTGHAVVLALNKWD-MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 QD ++ ++ + G A+V+A+NKWD + + + +DL + + L + + +S Sbjct: 275 TDQDATVLAAILDAGKALVVAMNKWDGLATYQREQAEDLLS---RKLGFVNWAEVVRLSA 331 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 + G GL +L ++ + + +TS +N L+ PPP+I ++L+Y+ S Sbjct: 332 KHGSGLRELFRAIHRAHVSALRQFSTSEVNKALEIAYQTAPPPSIRGHVSKLRYVHPAGS 391 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 +PP+F++ T +P++YKRYL N R F L G P+R F+ NPY Sbjct: 392 NPPTFIVHGTRLKVLPDTYKRYLENFFRKRFKLVGTPVRFLFREGDNPY 440 >gi|93005486|ref|YP_579923.1| GTP-binding protein EngA [Psychrobacter cryohalolentis K5] gi|122415786|sp|Q1QD14|DER_PSYCK RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|92393164|gb|ABE74439.1| Small GTP-binding protein domain [Psychrobacter cryohalolentis K5] Length = 480 Score = 266 bits (681), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 156/471 (33%), Positives = 254/471 (53%), Gaps = 40/471 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI--AD 62 +A++G PNVGKSTLFN+ K + A+V + G+TRDR YG A F +VDT GI AD Sbjct: 7 VALIGRPNVGKSTLFNQFTKSRQALVADLSGLTRDRQYGDATYEDKAFIVVDTGGIGEAD 66 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 I M++Q+ AI+EA +I+F++D++AG+ D I FL P+ +V+NK+D Sbjct: 67 DGRGDIDDYMSEQSYTAIHEADIIVFVVDARAGMIGADAEIGKFLHTLGKPVYVVANKVD 126 Query: 123 TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 + E Y+L E ++A H G L LE++ + ++ Sbjct: 127 G-VHDSAPAEFYALGLGEPYPMAASHGRGVGNL----------------LEVLTADMPSQ 169 Query: 183 ESPKENITSEGKSSVKNISKP--LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 E N+ +P L++A++GRPNVGKSTL+NRLLG +R++ G TRD Sbjct: 170 E---------------NVVEPRGLKLAIIGRPNVGKSTLVNRLLGEDRVVVFDMPGTTRD 214 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ I + + + DTAG+R+ +I E +E+ +V K++Q++ T++++DA Sbjct: 215 SIYIPYTREGKDYVLIDTAGVRRRGKIDEKVEKFSVIKTLQAIEDSNVTVIVIDAHEGIV 274 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWD-MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGR 359 QDL ++ + G A+V+A+NKWD + +D+ N ++ + +P + ++ IS Sbjct: 275 DQDLHMIGYALDAGRALVVAINKWDGLTADQKNYIKIEMDRRFNFIPY---VKVHQISAL 331 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 G G+ +L S+L + ++T+ L LQ NPPPT+ R +L+Y + Sbjct: 332 HGTGVGNLYPSILRAYQSSMFEVSTNRLTQILQDAVTANPPPTVAGRRIKLRYAHIGGHN 391 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 PP +I +P+SY+RYL N+ R F L G P+ + F+ ++NPY K Sbjct: 392 PPVIVIHGNQTGSLPKSYQRYLENQFRQVFKLEGTPLNVVFKLNENPYANK 442 >gi|154498134|ref|ZP_02036512.1| hypothetical protein BACCAP_02115 [Bacteroides capillosus ATCC 29799] gi|150273124|gb|EDN00281.1| hypothetical protein BACCAP_02115 [Bacteroides capillosus ATCC 29799] Length = 441 Score = 266 bits (680), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 144/453 (31%), Positives = 239/453 (52%), Gaps = 29/453 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKS LFNRLV +++++V + PG+TRDR+Y + F+IVDT GI Sbjct: 5 VAIVGRPNVGKSMLFNRLVGQRLSIVEDTPGVTRDRIYAECEWRNRKFDIVDTGGIEPNT 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD-T 123 + I M +Q E+AI A + +F+ D K+G+T D + + L + P+++ NKMD Sbjct: 65 DSEILSFMREQAEIAIRNADVTVFVCDIKSGLTASDQEVANMLLRSGKPVVLAVNKMDQV 124 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + +E Y+L + + +SA H GT +L F+ F Sbjct: 125 GMTNPDIFEFYNLGLGDPIAVSAVHGHGTGDLLDACFQYF-------------------- 164 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 P E+ E +K +AV+G+PNVGKS+LINR+LG R++ + +G TRD++ Sbjct: 165 -PPEDQVEEQDDVIK-------VAVIGKPNVGKSSLINRILGEERVIVSNMAGTTRDAID 216 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + + DTAGMRK S++ + +E+ +V ++ ++ C+ ++++DA +QD Sbjct: 217 SYYENDKGKYILIDTAGMRKKSKVDDRIEKFSVLRATMAIERCDVCLIMVDAQEGVTEQD 276 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 ++ G A ++ +NKWD + + +R ++L + I IS +TG+ Sbjct: 277 TKVAGLAHEAGKACIIVVNKWDAIEKDDKTMDKMRQDVRRDLSYMTYAPILFISAKTGQR 336 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 ++ L + +N RITT LN+ L + PPT R ++ Y+TQ+ PP F Sbjct: 337 VERLFELINYVNDQASLRITTGMLNTVLADATARVQPPTDKGRRLKIYYMTQVGIKPPHF 396 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 ++FC SY+RY+ N++R F L G P+ Sbjct: 397 VVFCNDAQLFHFSYQRYIENQIRNTFGLEGTPV 429 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 36/124 (29%), Positives = 62/124 (50%), Gaps = 2/124 (1%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + +A++G PNVGKS+L NR++ ++ +V N G TRD + + + ++DTAG+ Sbjct: 176 VIKVAVIGKPNVGKSSLINRILGEERVIVSNMAGTTRDAIDSYYENDKGKYILIDTAGMR 235 Query: 62 DGKNCS--IAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 I K + +AI + L ++D++ G+T D + + IIV N Sbjct: 236 KKSKVDDRIEKFSVLRATMAIERCDVCLIMVDAQEGVTEQDTKVAGLAHEAGKACIIVVN 295 Query: 120 KMDT 123 K D Sbjct: 296 KWDA 299 >gi|85059734|ref|YP_455436.1| GTP-binding protein EngA [Sodalis glossinidius str. 'morsitans'] gi|123519082|sp|Q2NS44|DER_SODGM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|84780254|dbj|BAE75031.1| putative GTP-binding protein [Sodalis glossinidius str. 'morsitans'] Length = 488 Score = 266 bits (680), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 159/471 (33%), Positives = 252/471 (53%), Gaps = 7/471 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR Y +A G F ++DT GI Sbjct: 1 MIPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYCRAEWEGHEFIVIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M Q+ +AI EA ++LF++D +AG+ D I LR + +IV+NK Sbjct: 61 -DGTEEGVETRMAGQSLVAIEEADIVLFMVDGRAGLMAADKGIARHLRSREKTTVIVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLG-TSELHSVIFKIFKQKYPNHPLEMIENNK 179 D A + YSL EIV I+A H G S L V+ + E Sbjct: 120 TDGIDADSAVGDFYSLGMGEIVPIAASHGRGINSLLEQVLLPLVSDGLAEAEDEFA---P 176 Query: 180 RNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITR 239 ++ + E + S P+++A+VGRPNVGKSTL NR+LG R++ G TR Sbjct: 177 WPDDEAEVLAREEEEEPFDPQSLPIKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTR 236 Query: 240 DSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPF 299 DS+ I + DTAG+RK ++TE++E+ +V K++Q++ ++++DA Sbjct: 237 DSIYIPMVRDEREYVLIDTAGVRKRGKVTETVEKFSVIKTLQAIEDANVVLLVIDAREGI 296 Query: 300 EKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGR 359 QDL ++ + N+G ++V+A+NKWD +S + +++ L I ++ IS Sbjct: 297 SDQDLSLLGFILNSGRSLVIAVNKWDGLSSETR--DEVKEALDHRLGFIDFARVHFISAL 354 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 G G+ +L SV E + R++T+ L ++ ++ PP + R + KY + Sbjct: 355 HGSGVGNLFESVNEAYQCATKRVSTALLTRIMRMAVDEHQPPLVRGRRVKPKYAHAGGYN 414 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 PP +I T +P++YKRYL+N R + + G PIR+ F NP+ + Sbjct: 415 PPIVVIHGTQVKDLPDTYKRYLMNYFRRSLGIMGTPIRIQFNEGANPFAGR 465 >gi|319952374|ref|YP_004163641.1| gtp-binding protein enga [Cellulophaga algicola DSM 14237] gi|319421034|gb|ADV48143.1| GTP-binding protein engA [Cellulophaga algicola DSM 14237] Length = 435 Score = 266 bits (680), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 150/457 (32%), Positives = 243/457 (53%), Gaps = 30/457 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +AIVG PNVGKST FNRL+K++ A+V G+TRDR YG++ NG F+++DT G Sbjct: 1 MSAIVAIVGRPNVGKSTFFNRLIKRREAIVDAVSGVTRDRHYGKSDWNGREFSVIDTGGY 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 G + +++ Q ELAI+EA +I+F++D + GIT D + + LR+ P+++ NK Sbjct: 61 VKGSDDVFEAEIDKQVELAIDEADVIIFMVDVETGITGMDEDVANLLRRVKKPVLLAVNK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D + E YSL + I++ + GT +L + ++ +K PN R Sbjct: 121 VDNNKRAEDAVEFYSLGLGDYFTIASTNGSGTGDLLDALVEVLPEKEPN----------R 170 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 +EE P R AVVGRPN GKS+ IN L+G R + +G TRD Sbjct: 171 DEELP-------------------RFAVVGRPNAGKSSFINALIGEERYIVTDVAGTTRD 211 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ +N + DTAG+R+ S++ E LE +V +S++++ + I++LDAT F+ Sbjct: 212 SIDTKYNRFGFEFNLVDTAGIRRKSKVHEDLEFYSVMRSVRAIEHSDVCIIILDATRGFD 271 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDK-LNLLQDLRTKAIKNLPQIGDIYINTISGR 359 Q I +V+ +NKWD+V DK N ++ K +++ D+ I +S Sbjct: 272 GQVQNIFWLAQRNNKGIVILVNKWDLVEDKETNTIKQYTEKIKESMAPFIDVPIVFMSVL 331 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 T + + + + +++ + +I T N + PPP +Y ++K+ TQ+ + Sbjct: 332 TKQRIFKAIETAVQVYENRSRKIQTRKFNDIMLPLIENYPPPAYKGKYVKIKFCTQLPTP 391 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 P F FC P + + YKR+L N+LR +F SG+PI Sbjct: 392 YPQFAFFCNLPQYVRDPYKRFLENKLRESFDFSGVPI 428 >gi|224826453|ref|ZP_03699555.1| small GTP-binding protein [Lutiella nitroferrum 2002] gi|224601554|gb|EEG07735.1| small GTP-binding protein [Lutiella nitroferrum 2002] Length = 463 Score = 266 bits (680), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 159/470 (33%), Positives = 247/470 (52%), Gaps = 37/470 (7%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M T+A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG + + +VDT G Sbjct: 1 MKPTVALVGRPNVGKSTLFNRLTRSRDALVADQPGLTRDRHYGHGRVGDKPYLVVDTGGF 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + I +M QT A++EA I+FL+D + GITP D I + LR+ + P+ +V NK Sbjct: 61 EPVVDEGILFEMARQTLQAVDEADAIVFLVDGRTGITPQDKIIANRLRQNDRPVFLVVNK 120 Query: 121 MD---TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 + IA F+E L E + ISA H G EL ++ + F P E Sbjct: 121 AEGISQSIAGAEFHE---LALGEPLAISAAHGDGVRELMEMVLEPF-------PAATDEK 170 Query: 178 NKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGI 237 R+ PK AV+GRPNVGKSTL+N +LG R++ Q+G Sbjct: 171 EVRH---PK-------------------FAVIGRPNVGKSTLVNAILGEERVIAFDQAGT 208 Query: 238 TRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATI 297 TRDS+ I + +H I DTAG+R+ ++ E++E+ +V K+M+++ +++LDA + Sbjct: 209 TRDSIYIDFERDDHTYTIIDTAGVRRRGKVNETIEKFSVIKTMKAIEDANVAVLVLDAQL 268 Query: 298 PFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTIS 357 +QD I G A+V+A+NKWD + + L ++ + + L + + IS Sbjct: 269 DISEQDATIAGFALEAGRALVVAVNKWDNIDTEQKEL--VKHEIARKLGFLDFAKFHFIS 326 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 G G+ DL S+ E + ++ T L L+ + PP + +++Y Q Sbjct: 327 AIEGRGIADLFKSIDEAYRAAMVKLATPKLTRVLEVAVERQAPPRVGQVRPKMRYAHQGG 386 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 +PP +I K+P+SY RYL + R F L G P+R+ F+S++NP+ Sbjct: 387 MNPPIIVIHGNALAKVPDSYTRYLEHTFRKVFKLQGTPLRVQFKSAENPF 436 >gi|302878616|ref|YP_003847180.1| ribosome-associated GTPase EngA [Gallionella capsiferriformans ES-2] gi|302581405|gb|ADL55416.1| ribosome-associated GTPase EngA [Gallionella capsiferriformans ES-2] Length = 470 Score = 266 bits (680), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 154/470 (32%), Positives = 248/470 (52%), Gaps = 27/470 (5%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ T+ +VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+ + + +VDT G+ Sbjct: 1 MLPTLVLVGRPNVGKSTLFNRLTRSRDALVADQPGLTRDRHYGRGRVGERPYLVVDTGGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 I +M Q+ A++EA ++LFL+D +AG TP D I + LRK PI+++ NK Sbjct: 61 EPVAKDGIMFEMARQSRQAVDEADVVLFLVDGRAGCTPQDLIIATQLRKTGKPILLLVNK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + R E + L E IS+ H E+ + + N P E++E + Sbjct: 121 AEGMARARVTAEFFELGLGEPYPISSAHGDNVVEVIEIALE-------NFPEEIVEEDAV 173 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 E+ KP ++A+VGRPNVGKSTL+N +LG R++ Q G TRD Sbjct: 174 VED------------------KPPKLAIVGRPNVGKSTLVNAILGEQRVIAFDQPGTTRD 215 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ I + I DTAG+R+ ++ E++E+ +V K+MQ++ ++++DA Sbjct: 216 SIYIDFERDGKQYTIIDTAGVRRRGKVEEAIEKFSVIKTMQAIEDANVVVLVVDARDQIT 275 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 +QD + D V G A+VLA+NKWD + + + +++ + L +G + IS Sbjct: 276 EQDAHVADFVLQAGRALVLAVNKWDGLDNHQREM--VKSDIERKLHFLGFAKRHYISALN 333 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G G+ +++ S + ++++T L L + PP + +++Y Q S+P Sbjct: 334 GNGISNVLKSADDAYAAAMSKMSTPKLTRALLGATEKQAPPKVGRFLPKMRYAHQGGSNP 393 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 P +I + + IP SY RYL F L G P+++ F SSKNP+ K Sbjct: 394 PLIVIHGSGLDNIPASYARYLERSFAEIFKLEGTPLKIQFNSSKNPFEGK 443 >gi|89095338|ref|ZP_01168256.1| GTP-binding protein EngA [Oceanospirillum sp. MED92] gi|89080413|gb|EAR59667.1| GTP-binding protein EngA [Oceanospirillum sp. MED92] Length = 479 Score = 266 bits (680), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 159/472 (33%), Positives = 252/472 (53%), Gaps = 28/472 (5%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAII--NGVIFNIVDTA 58 M+ IA+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+ + + +VDT Sbjct: 1 MLPVIALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRKYGEGRLANEEQDYIVVDTG 60 Query: 59 GIADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVS 118 GI G I +M Q+ A++EA ++LF++D +AGI P D I ++LR+ P +V Sbjct: 61 GIT-GDEQGIDYEMAKQSLQAVDEADVVLFIVDGRAGINPADEMIANYLRRSEKPFYLVV 119 Query: 119 NKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 NK D + Y L F + I+A H G ++L +EM+ Sbjct: 120 NKTDGLNPDIVVADFYELGFGQPFPIAASHGRGVTQL----------------IEMVLEE 163 Query: 179 KRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 E + E + K ++IAVVGRPNVGKSTL+NR+LG +R++ ++G T Sbjct: 164 LPEPEEESQETMDE-------VEKSIKIAVVGRPNVGKSTLVNRMLGEDRVVVFDKAGTT 216 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RDSV I + + + DTAG+R+ ITE+ E+ ++ K++Q+V + ++DA Sbjct: 217 RDSVYIPYVRDDKNYTLIDTAGVRRRKNITEAAEKFSIVKTLQAVNDAHVVVFVIDAREG 276 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 +QD+ ++ V +TG ++V+ALNKWD ++ + + + + D++ IS Sbjct: 277 VTEQDMHMLSFVIDTGRSLVIALNKWDGMNGEEKARVKEQVERKLEFAEFADMHF--ISA 334 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 G + ++ SV E + + +TS L L+ + PP + R +L+Y Q S Sbjct: 335 LHGSNVGNMYDSVDEAYEYAMAKWSTSKLTRLLEDVVADHQPPMVKGRRIKLRYAHQGGS 394 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP ++ N +P SYKRYL N+ + G PIR F+SS+NP+ K Sbjct: 395 NPPIIVVHGNQTNALPGSYKRYLENKFISVLGIRGTPIRFEFKSSENPFEGK 446 >gi|153953981|ref|YP_001394746.1| GTP-binding protein EngA [Clostridium kluyveri DSM 555] gi|219854595|ref|YP_002471717.1| hypothetical protein CKR_1252 [Clostridium kluyveri NBRC 12016] gi|189037142|sp|A5N7W7|DER_CLOK5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|254783148|sp|B9E1C8|DER_CLOK1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|146346862|gb|EDK33398.1| Hypothetical protein CKL_1356 [Clostridium kluyveri DSM 555] gi|219568319|dbj|BAH06303.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 438 Score = 266 bits (680), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 152/460 (33%), Positives = 245/460 (53%), Gaps = 28/460 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFN+L K++++V + PG+TRDR+Y QA F I+DT GI Sbjct: 6 VAIVGRPNVGKSTLFNKLAGKRISIVEDTPGVTRDRVYAQAEWLNYNFTIIDTGGIEPEN 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N I +M Q ++AI A++I+F++D + G+T D + LRK PI++V NK+D Sbjct: 66 NDVIISKMRRQAQVAIETANVIIFIVDGREGLTAADKEVAQMLRKSKKPIVLVVNKIDNM 125 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + YE Y+L E + ISA LG ++ + + FK N+ NE+ Sbjct: 126 KQENYIYEFYNLGIGEPISISASQGLGLGDMLDKLVENFK-------------NEGNEDE 172 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 E I +IA +G+PNVGKS+LIN+LLG R++ G TRD++ Sbjct: 173 DSEYI---------------KIAFIGKPNVGKSSLINKLLGEERVIVSDIPGTTRDAIDS 217 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + DTAG+R+ S++ E +E+ +V ++ +V + I++LDAT +QD Sbjct: 218 YLETDEGKFLLIDTAGVRRKSKVKEEIEKYSVIRTYTAVERADVCILMLDATHDISEQDE 277 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 +I+ A+++ +NKWD+V + +T +L + IS +TG+ + Sbjct: 278 KIIGYAHELNKAIMVVINKWDLVDKDTKTVNKYKTSIGSSLSFMSYAPYLFISAKTGQRV 337 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 + + V E + +I T LN + K + PP + N+ ++ Y+TQI + PP+F+ Sbjct: 338 NRIFKMVRECYDNYCKQIKTGILNDIIGKIVMMKEPPVVGNKRLKIYYVTQIGTKPPTFV 397 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 F I SY+RY+ N+LR +F +G I++ F+ K Sbjct: 398 FFVNDSKCIHFSYRRYIENQLRDSFDFTGTGIKLEFRERK 437 >gi|312134636|ref|YP_004001974.1| ribosome-associated gtpase enga [Caldicellulosiruptor owensensis OL] gi|311774687|gb|ADQ04174.1| ribosome-associated GTPase EngA [Caldicellulosiruptor owensensis OL] Length = 440 Score = 266 bits (679), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 142/453 (31%), Positives = 245/453 (54%), Gaps = 28/453 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AIVG PNVGKSTLFNRL+ ++ A+V + PGITRDR+ G+ G+ FN++DT GI Sbjct: 4 TVAIVGRPNVGKSTLFNRLIGERRAIVDDTPGITRDRIIGETEWRGITFNVIDTGGIEPY 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 I KQM Q + A++ + +I+F++D K G+T D + + LR PI++ NK+D Sbjct: 64 SEDIILKQMRRQAQFAVDMSDVIIFIVDGKTGLTDADREVANMLRASKKPIVLAVNKIDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + YE Y L + + +SAEH G ++ + + L+ + N+ E Sbjct: 124 ISQEPMIYEFYELGLSDPIAMSAEHGTGVGDVLDAVV---------NYLDNVGINEIEES 174 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 + +++A++G+PN GKS+L+N +LG R++ G TRD++ Sbjct: 175 T-------------------IKVAIIGKPNTGKSSLVNYILGEERVIVSDIPGTTRDAID 215 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 ++ ++ PI + DTAG+R+ S+I +++E+ ++ +++Q++ + I+LLD T +QD Sbjct: 216 STFEFEGIPITLIDTAGLRRKSKIYDNVERYSMLRTLQAIERSDICIILLDGTEGVSEQD 275 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 +I + G ++A+NKWD V + + + + L + + IS +TG Sbjct: 276 AKIAGYAYEAGKGCIIAVNKWDAVEKDEKTADEYKKQIEEKLSFLKFAPVLFISAKTGFR 335 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 + L+ ++L + + + RITT LN L + PP+ + ++ Y+TQ+ PP Sbjct: 336 VKKLLETILYVYENYTRRITTGQLNDVLAEATTIYQPPSDKGKQLKIYYMTQVGEKPPKI 395 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 IF + SY+RY+ N LR F +G+PI Sbjct: 396 AIFVNSKDLFHFSYQRYIENYLRKTFDFTGVPI 428 >gi|325272131|ref|ZP_08138563.1| GTP-binding protein Der [Pseudomonas sp. TJI-51] gi|324102727|gb|EGC00142.1| GTP-binding protein Der [Pseudomonas sp. TJI-51] Length = 487 Score = 266 bits (679), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 166/475 (34%), Positives = 254/475 (53%), Gaps = 23/475 (4%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ IA+VG PNVGKST+FNRL K + A+VG+ G+TRDR YG A G F ++DT GI Sbjct: 1 MVPVIALVGRPNVGKSTMFNRLTKTRDAIVGDLSGLTRDRQYGDASWQGRSFILIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 G + ++M +Q+ +AI EA +LFL+D++AG+T D I LRK+N I+V+NK Sbjct: 61 T-GDEVGMDEKMAEQSLMAIEEADYVLFLVDARAGMTAADQMIAEHLRKRNKEAILVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D A E L + ++ G + L + P + +E Sbjct: 120 IDNIDADVARAEFSPLGMGNAIPVAGSQGRGINALMEAVLGHL-------PRDQVE---- 168 Query: 181 NEESPKENITSEGKSSVKNISKP-----LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQS 235 E+ ++ +EG+ +V+ I P ++IA++GRPNVGKSTL+NR+LG R++ Q Sbjct: 169 --EALDADV-AEGEEAVR-IPGPSEKDGIKIAIIGRPNVGKSTLVNRMLGEERVVVYDQP 224 Query: 236 GITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDA 295 G TRDS+ I + DTAG+RK +I E +E+ +V K++Q+++ I ++DA Sbjct: 225 GTTRDSIYIPFERDGEKYTFIDTAGVRKRGKIHEEVEKFSVVKTLQAIKDANVVIFVMDA 284 Query: 296 TIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINT 355 DL ++ G A+V+ALNKWD + + ++T+ + L + I+ Sbjct: 285 REGVVDHDLNLLGFALEAGRAIVIALNKWDGM--QPGERDYVKTELERRLFFVDFADIHF 342 Query: 356 ISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQ 415 IS G G+ +L SV K TR TS L L+ ++ PP + R +L+Y Sbjct: 343 ISALHGTGVGNLYKSVQAAFKSAVTRWPTSRLTQILEDAVSEHQPPLVNGRRIKLRYAHL 402 Query: 416 IQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 ++PP +I KIP+SY RYL N R L G PIR+ ++ +NPY K Sbjct: 403 GGANPPLIVIHGNQTEKIPKSYSRYLENTYRRVLKLVGTPIRIEYKGGENPYEGK 457 >gi|325299810|ref|YP_004259727.1| GTP-binding protein engA [Bacteroides salanitronis DSM 18170] gi|324319363|gb|ADY37254.1| GTP-binding protein engA [Bacteroides salanitronis DSM 18170] Length = 437 Score = 266 bits (679), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 163/454 (35%), Positives = 244/454 (53%), Gaps = 30/454 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNRL K + A+V G TRDR YG++ G F++VDT G Sbjct: 5 VAIVGRPNVGKSTLFNRLTKTRQAIVNEQAGTTRDRQYGKSEWQGKEFSVVDTGGWVVNS 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +++ Q LA++EA +ILFL+D K G+T D + + LR+ P+I+V+NK D Sbjct: 65 DDIFEEEIRKQVILAMDEADVILFLVDVKNGVTDLDMDVAAILRRSKKPVIVVANKTDNN 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 Q N E YSL E ISA GT +L +I F+++ + + +EE Sbjct: 125 DLQYNAAEFYSLGLGEPYCISALSGSGTGDLLDLILSKFRKE---------ADEELDEEI 175 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P R AVVGRPN GKS+LIN +G R + +G TRDS+ Sbjct: 176 P-------------------RFAVVGRPNAGKSSLINAFVGEERNIVTEIAGTTRDSIYT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 ++ + DTAG+RK +++ E LE +V +S++++ + I++LDAT E QDL Sbjct: 217 RYDKFGFDFYLVDTAGIRKKNKVNEDLEYYSVIRSIRAIENSDVCILMLDATRGIEGQDL 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKN-LPQIGDIYINTISGRTGEG 363 I + +V+ +NKWD+V +K + AI+N L D I S T + Sbjct: 277 NIFSLIQRNQKGLVVVVNKWDLVEEKSAKVMKTYETAIRNRLAPFTDFPIIFASALTKQR 336 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP-PS 422 + ++ + E+ + TRI+T+ LN L PPP+ +Y ++KYITQ+ ++ PS Sbjct: 337 IFKVLETAKEVYQARTTRISTARLNEALLPLIEAYPPPSNKGKYIKIKYITQLPNTQVPS 396 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 F+ F P + E YKR+L N++R + LSG PI Sbjct: 397 FIFFANLPQYVKEPYKRFLENQIRERWKLSGTPI 430 >gi|153939462|ref|YP_001391817.1| GTP-binding protein EngA [Clostridium botulinum F str. Langeland] gi|166224329|sp|A7GGA7|DER_CLOBL RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|152935358|gb|ABS40856.1| ribosome-associated GTPase EngA [Clostridium botulinum F str. Langeland] gi|295319842|gb|ADG00220.1| ribosome-associated GTPase EngA [Clostridium botulinum F str. 230613] Length = 439 Score = 266 bits (679), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 149/460 (32%), Positives = 242/460 (52%), Gaps = 28/460 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFN+L K++A+V + PG+TRDR+Y +A F ++DT GI Sbjct: 6 VAIVGRPNVGKSTLFNKLAGKRIAIVQDTPGVTRDRIYAEAEWLNYKFTMIDTGGIEPKS 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I QM Q ++AI A++I+FL+D K G+ P D + LRK P+++V NK+D Sbjct: 66 EDIIVSQMRRQAQIAIEMANVIIFLVDGKEGLAPADEEVAQMLRKSKKPVVLVVNKIDKL 125 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + N YE Y+L + V IS+ LG ++ + + FK Sbjct: 126 KDENNAYEFYNLGIGDPVTISSSQALGLGDMLDRVVEYFKD------------------- 166 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 S + + IA +G+PNVGKS+LIN+LLG RL+ G TRDS+ Sbjct: 167 ---------DESDGEDDERINIAFIGKPNVGKSSLINKLLGEERLIVSDIPGTTRDSIDS 217 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + + DTAG+R+ S++ E +E+ +V ++ S+ + I+++DAT +QD Sbjct: 218 YVDTEFGEFTLIDTAGLRRKSKVKEEIERYSVIRTYASIERADVCILMIDATEGISEQDQ 277 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 +I+ + A+++ +NKWD+V + + + NL + IS +TG+ + Sbjct: 278 KIIGYAHDINKAILVIVNKWDLVEKDDKTMDKFKKELKVNLSFMPYAKYLFISAKTGQRI 337 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 ++ + E + R+ T LN + + + PP + + ++ Y+TQI + PP+F+ Sbjct: 338 VKVLQTAKECYDNYTKRVKTGVLNDVISQAIMMKEPPIVGTKRLKIYYVTQIGTKPPTFI 397 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 F P I SY+RYL N+LR NF G I++ F+ K Sbjct: 398 FFVNDPACIHFSYQRYLENQLRENFDFQGTGIKLEFRERK 437 >gi|91775967|ref|YP_545723.1| small GTP-binding protein domain-containing protein [Methylobacillus flagellatus KT] gi|91709954|gb|ABE49882.1| Small GTP-binding protein domain [Methylobacillus flagellatus KT] Length = 499 Score = 266 bits (679), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 160/473 (33%), Positives = 248/473 (52%), Gaps = 34/473 (7%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ TI +VG PNVGKSTLFNRL K + A+V + PG+TRDR YG+ ++ + +VDT G Sbjct: 2 MLPTIVLVGRPNVGKSTLFNRLTKTRDALVADLPGLTRDRHYGRGVVGSKPYLVVDTGGF 61 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + I K+M QT LAI+EA +++FL+D + G+ P D I LRK PI++ NK Sbjct: 62 EPLVDSGILKEMARQTLLAIDEADVVIFLVDGRNGLAPQDKVIAERLRKSQRPILLAVNK 121 Query: 121 ---MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 M IA F+E L + IS+ H G +L + + F + Sbjct: 122 TEGMQRAIASAEFHE---LGLGHPLSISSAHGEGVRDLVELALENFPE------------ 166 Query: 178 NKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGI 237 P E S+G K +A+VGRPNVGKSTL+N LLG R++ Q G Sbjct: 167 -------PGEEEESQGNQVPK-------VAIVGRPNVGKSTLVNALLGEERVIAFDQPGT 212 Query: 238 TRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATI 297 TRDS+ + I DTAG+R+ ++ E++E+ +V K+MQ++ I+++DA Sbjct: 213 TRDSIYLDLERNGKRYTIIDTAGVRRRGKVFEAVEKFSVIKTMQAIEEANVAILVVDAQE 272 Query: 298 PFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTIS 357 +QD + + ++G A+V+A+NKWD + D + + ++ + + L + + IS Sbjct: 273 GITEQDAHVSAYILDSGRALVVAVNKWDGLED--DKREWIKREIDRKLQFLDFAKFHYIS 330 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 +GL +L SV K +++T L L+ +Q+ PP +L+Y Q Sbjct: 331 ALRKKGLGELFHSVDAAYKAAMAKLSTPQLTRVLEDATMQHQPPISKGIRPKLRYAHQGG 390 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 S+PP +I + I ESY+RYL R F L+G P+R+ F NP+ ++ Sbjct: 391 SNPPIVVIHGNHVDGIKESYRRYLAGVFRKAFQLTGTPLRVQFNQGHNPFAEQ 443 >gi|301059965|ref|ZP_07200844.1| ribosome-associated GTPase EngA [delta proteobacterium NaphS2] gi|300445932|gb|EFK09818.1| ribosome-associated GTPase EngA [delta proteobacterium NaphS2] Length = 435 Score = 266 bits (679), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 155/463 (33%), Positives = 244/463 (52%), Gaps = 40/463 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTLFNRL + K A+V + PGITRDRL+G G+ +VDT G D Sbjct: 5 IAIVGRPNVGKSTLFNRLTRSKRALVDDRPGITRDRLHGTISHEGLQMTLVDTGGFEDLG 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + K + Q E AI EA I+F++D + G+ P D + LR+ + +V NK+D Sbjct: 65 QDPLQKGVRAQVETAIQEADRIIFMVDGREGVLPGDDEMAHLLRRMQKRVFLVVNKIDGP 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + E Y L + + +SA H G L + + K S Sbjct: 125 EKEHLAGEFYQLGYDAVYTLSAAHGYGVKALLNDLVKGL--------------------S 164 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P E+ + S+ +R+AV+G+PNVGKS+LINR+L +RL+ G TRD+V Sbjct: 165 PSEDTGED--------SEEIRVAVLGKPNVGKSSLINRILKTDRLVVSELPGTTRDTVDS 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 ++++ + DTAG+R+ SR+ E +++ ++ K+++S+ C ++LLD QD Sbjct: 217 AFSYGGREYLLIDTAGIRRKSRVREKVDKFSMIKAIKSLDRCHVAVLLLDGAEGVSDQDA 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVS---DKLNLLQ---DLRTKAIKNLPQIGDIYINTISG 358 RI G +VLA+NKWD+V +K N L+ + R K I P+I +S Sbjct: 277 RICGYALEKGRGIVLAINKWDLVKGNVEKRNQLERGIERRLKFISFAPRI------NLSA 330 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 TGE + L + + + RI T +N +Q+ ++PPP + + Y TQ ++ Sbjct: 331 LTGERVMKLFSRIDSVYDQFSRRIGTPLVNRAIQEVMEKHPPPRLGRGRLKFYYGTQTRT 390 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 PP+F +F P+ + SY+R+L N+L I+ L+ P+++ F+ Sbjct: 391 KPPTFTVFVNRPDMLHFSYERFLNNQLGIHLGLTQTPLKLVFR 433 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 36/95 (37%), Positives = 49/95 (51%), Gaps = 9/95 (9%) Query: 203 PLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMR 262 P IA+VGRPNVGKSTL NRL R L + GITRD + + + + + + DT G Sbjct: 2 PPVIAIVGRPNVGKSTLFNRLTRSKRALVDDRPGITRDRLHGTISHEGLQMTLVDTGGF- 60 Query: 263 KPSRITESLEQKTVKKSMQSVRTCETTIVLLDATI 297 E L Q ++K +++ ET I D I Sbjct: 61 ------EDLGQDPLQKGVRA--QVETAIQEADRII 87 >gi|87118473|ref|ZP_01074372.1| GTPase EngA [Marinomonas sp. MED121] gi|86166107|gb|EAQ67373.1| GTPase EngA [Marinomonas sp. MED121] Length = 454 Score = 266 bits (679), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 155/470 (32%), Positives = 251/470 (53%), Gaps = 26/470 (5%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI IA+VG PNVGKSTLFN+L + + A+V ++PG+TRDR YG I F ++DT GI Sbjct: 1 MIPVIALVGRPNVGKSTLFNQLTRSRDALVADYPGLTRDRKYGDGRIGEHEFIVIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + G I ++M Q+ LAI EA +LFL+D + G+ P D I + LR+ N P +V NK Sbjct: 61 S-GDEMGIDEKMARQSLLAIEEADTVLFLVDGRHGLNPADEMIANHLRRSNKPTFMVVNK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 D + YS+ ++ I+A H G +L + F ++ Sbjct: 120 TDGINEDVALADFYSIGLGDLHPIAASHGKGVHKLIDICMLPFAEQ-------------- 165 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 E K + SK RI V+GRPNVGKSTL+NR+LG +R++ G TRD Sbjct: 166 ---------VQEAKGQIDIESKGTRIGVIGRPNVGKSTLVNRMLGEDRVVVYDMPGTTRD 216 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 SV I + + DTAG+R+ I E++E+ ++ K++++++ IV++D Sbjct: 217 SVYIPYIRNEKEYTLIDTAGVRRRKHIKEAVEKFSIVKTLKAIQDANVVIVVIDGHEDLV 276 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 +QDL ++ V + G +V+A+NKWD + + ++T+ + L + ++ IS Sbjct: 277 EQDLHMIGYVIDAGRGLVIAVNKWDGLDQYSK--ERIKTEVERRLGFVPYAKVHYISALH 334 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G + +L ++ E + + +T+ L ++ ++ PP + R +L+Y Q S+P Sbjct: 335 GTAVGNLYDTIDETYESCYAKWSTNRLTRIMEDIISEHQPPLVRGRRIKLRYAHQGGSNP 394 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 P +I + +P SYK+YL N+ R +++G PI F+SS+NPY K Sbjct: 395 PRIVIHGNQVDALPGSYKKYLENKFRQVLNITGTPITFEFKSSENPYAPK 444 >gi|15837067|ref|NP_297755.1| GTP-binding protein EngA [Xylella fastidiosa 9a5c] gi|26006743|sp|Q9PG37|DER_XYLFA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|9105311|gb|AAF83275.1|AE003896_12 GTP-binding protein [Xylella fastidiosa 9a5c] Length = 465 Score = 266 bits (679), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 153/469 (32%), Positives = 251/469 (53%), Gaps = 31/469 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGV-IFNIVDTAG 59 M+ +A+VG PNVGKSTLFN L + A+V + PG+TRDR YG I+G +F +VDT G Sbjct: 1 MLPLVALVGRPNVGKSTLFNALTLTRDALVHDQPGVTRDRHYGVCRIDGQPLFAVVDTGG 60 Query: 60 IADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 + GK +A Q LA EA ++LF+++ + G++ D I ++LRK + P ++V N Sbjct: 61 MV-GKEDGLAGATARQARLAAAEADVVLFVVNVREGVSALDDDILAWLRKLSQPTLLVIN 119 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNK 179 K+D E F ++V +SA H G +L + ++ L+ E+++ Sbjct: 120 KIDGVSDATVHSEFAHYGFSDVVPVSAAHRQGLDDLIEQVLAWLPERGIGEALD--EDSE 177 Query: 180 RNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITR 239 R + IA VGRPNVGKSTL+NRLLG R++ G TR Sbjct: 178 R-----------------------IHIAFVGRPNVGKSTLVNRLLGEERMIVSDVPGTTR 214 Query: 240 DSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPF 299 DS+++ + DTAG+R+ S++ E++E+ + K++Q + C+ ++LLDA Sbjct: 215 DSITVDLERDECRYRLVDTAGLRRKSKVEEAVEKFSAFKTLQVIEQCQVAVLLLDAGEGV 274 Query: 300 EKQDLRIVDSVFNTGHAVVLALNKWDMVSD-KLNLLQDLRTKAIKNLPQIGDIYINTISG 358 QD ++ ++ + G A+V+A+NKWD + + +DL + + L + + +S Sbjct: 275 TDQDATVLAAILDAGKALVVAMNKWDGLGTYQREQAEDLLS---RKLGFVNWAEVVRLSA 331 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 + G GL +L ++ + + +TS +N L+ PPP+I ++L+Y+ S Sbjct: 332 KHGSGLRELFRAIHRAHVSALRQFSTSEVNKALEIAYQTAPPPSIRGHVSKLRYVHPAGS 391 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 +PP+F++ T +P++YKRYL N R F L G P+R F+ NPY Sbjct: 392 NPPTFIVHGTRLKVLPDTYKRYLENFFRKRFKLVGTPVRFLFREGDNPY 440 >gi|168180594|ref|ZP_02615258.1| GTP-binding protein [Clostridium botulinum NCTC 2916] gi|226949875|ref|YP_002804966.1| GTP-binding protein EngA [Clostridium botulinum A2 str. Kyoto] gi|254783146|sp|C1FSU2|DER_CLOBJ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|182668460|gb|EDT80439.1| GTP-binding protein [Clostridium botulinum NCTC 2916] gi|226841615|gb|ACO84281.1| ribosome-associated GTPase EngA [Clostridium botulinum A2 str. Kyoto] gi|322806789|emb|CBZ04358.1| GTP-binding protein EngA [Clostridium botulinum H04402 065] Length = 439 Score = 266 bits (679), Expect = 8e-69, Method: Compositional matrix adjust. Identities = 149/460 (32%), Positives = 242/460 (52%), Gaps = 28/460 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFN+L K++A+V + PG+TRDR+Y +A F ++DT GI Sbjct: 6 VAIVGRPNVGKSTLFNKLAGKRIAIVQDTPGVTRDRIYAEAEWLNYKFTMIDTGGIEPKS 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I QM Q ++AI A++I+FL+D K G+ P D + LRK P+++V NK+D Sbjct: 66 EDIIVSQMRRQAQIAIEMANVIIFLVDGKEGLAPADEEVAQMLRKSKKPVVLVVNKIDKL 125 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + N YE Y+L + V IS+ LG ++ + + FK Sbjct: 126 KDENNAYEFYNLGIGDPVTISSSQALGLGDMLDRVVEYFKD------------------- 166 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 S + + IA +G+PNVGKS+LIN+LLG RL+ G TRDS+ Sbjct: 167 ---------DESDGEDDERINIAFIGKPNVGKSSLINKLLGEERLIVSDIPGTTRDSIDS 217 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + + DTAG+R+ S++ E +E+ +V ++ S+ + I+++DAT +QD Sbjct: 218 YVDTEFGEFTLIDTAGLRRKSKVKEEIERYSVIRTYASIERADVCILMIDATEGISEQDQ 277 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 +I+ + A+++ +NKWD+V + + + NL + IS +TG+ + Sbjct: 278 KIIGYAHDINKAILVIVNKWDLVEKDDKTMDKFKKELKVNLSFMPYAKYLFISAKTGQRV 337 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 ++ + E + R+ T LN + + + PP + + ++ Y+TQI + PP+F+ Sbjct: 338 VKVLQTAKECYDNYTKRVKTGVLNDVISQAIMMKEPPIVGTKRLKIYYVTQIGTKPPTFI 397 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 F P I SY+RYL N+LR NF G I++ F+ K Sbjct: 398 FFVNDPACIHFSYQRYLENQLRENFDFQGTGIKLEFRERK 437 >gi|251796400|ref|YP_003011131.1| GTP-binding protein EngA [Paenibacillus sp. JDR-2] gi|247544026|gb|ACT01045.1| small GTP-binding protein [Paenibacillus sp. JDR-2] Length = 440 Score = 266 bits (679), Expect = 8e-69, Method: Compositional matrix adjust. Identities = 147/454 (32%), Positives = 237/454 (52%), Gaps = 28/454 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKST+FNR+V ++A+V + PG+TRDRLY NG F+IVDT GI Sbjct: 6 IAIVGRPNVGKSTIFNRVVGDRLAIVEDKPGVTRDRLYSPGEWNGKAFSIVDTGGIEIDG 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I K + Q ELAI EA +I+F+ D+K G+T D + L + + P+++ NK+D Sbjct: 66 EDEIMKSVRMQAELAIEEADVIIFMCDAKTGVTHADDEVAQMLFRSHKPVVLAVNKVDNL 125 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 YE Y L F + +S H LG ++ +K P +E++ +++ Sbjct: 126 NRMDEIYEFYGLGFGTPIAVSGSHGLGIGDMLDAAI----EKLPE-----LEDDGYDDDV 176 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 +R+A++GRPNVGKS+L+N LLG R++ + +G TRD++ Sbjct: 177 -------------------IRVALIGRPNVGKSSLVNALLGEERVIVSNVAGTTRDAIDT 217 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + DTAGMRK ++ ES E+ +V ++++++ + +VL++ +QD Sbjct: 218 PFERDGQKYVLIDTAGMRKRGKVYESTEKYSVMRALKAIERADVVLVLINGEEGIIEQDK 277 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 I G A + +NKWD+V +Q+ + + I +S +T + L Sbjct: 278 HIAGYAHEAGKASIFVVNKWDVVDKDDKTMQEFTQNIRDHFLFMTYAPIVFLSAKTKQRL 337 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 L+ V +++ RI T LN + NPPPT + ++ Y+TQ+ + PP+ + Sbjct: 338 HKLLPVVNHVSEQHAMRIQTHLLNDVVSDAVAYNPPPTDKGKRLKINYVTQVATKPPTIV 397 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 IF P + SY+RYL N++R F G P+R+ Sbjct: 398 IFVNNPEMMHFSYERYLENKIRAAFDFEGTPVRL 431 >gi|170757031|ref|YP_001782064.1| GTP-binding protein EngA [Clostridium botulinum B1 str. Okra] gi|229710728|sp|B1IIN2|DER_CLOBK RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|169122243|gb|ACA46079.1| ribosome-associated GTPase EngA [Clostridium botulinum B1 str. Okra] Length = 439 Score = 265 bits (678), Expect = 8e-69, Method: Compositional matrix adjust. Identities = 148/460 (32%), Positives = 241/460 (52%), Gaps = 28/460 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFN+L K++A+V + PG+TRDR+Y +A F ++DT GI Sbjct: 6 VAIVGRPNVGKSTLFNKLAGKRIAIVQDTPGVTRDRIYAEAEWLNYKFTMIDTGGIEPES 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I QM Q ++AI A++I+FL+D K G+ P D + LRK P+++V NK+D Sbjct: 66 EDIIVSQMRRQAQIAIEMANVIIFLVDGKEGLAPADEEVAQMLRKSKKPVVLVVNKIDKL 125 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + N YE Y+L + V IS+ LG ++ + + FK Sbjct: 126 KDENNAYEFYNLGIGDPVTISSSQALGLGDMLDRVVEYFKD------------------- 166 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 + + IA +G+PNVGKS+LIN+LLG RL+ G TRDS+ Sbjct: 167 ---------DELDGEEDERINIAFIGKPNVGKSSLINKLLGEERLIVSDIPGTTRDSIDS 217 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + + DTAG+R+ S++ E +E+ +V ++ S+ + I+++DAT +QD Sbjct: 218 YVDTEFGEFTLIDTAGLRRKSKVKEEIERYSVIRTYASIERADVCILMIDATEGISEQDQ 277 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 +I+ + A+++ +NKWD+V + + + NL + IS +TG+ + Sbjct: 278 KIIGYAHDINKAILVIVNKWDLVEKDDKTMDKFKKELKVNLSFMPYAKYLFISAKTGQRV 337 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 ++ + E + R+ T LN + + + PP + + ++ Y+TQI + PP+F+ Sbjct: 338 VKVLQTAKECYDNYTKRVKTGVLNDVISQAIMMKEPPIVGTKRLKIYYVTQIGTKPPTFI 397 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 F P I SY+RYL N+LR NF G I++ F+ K Sbjct: 398 FFVNDPACIHFSYQRYLENQLRENFDFQGTGIKLEFRERK 437 >gi|16079341|ref|NP_390165.1| GTP-binding protein EngA [Bacillus subtilis subsp. subtilis str. 168] gi|221310200|ref|ZP_03592047.1| GTP-binding protein EngA [Bacillus subtilis subsp. subtilis str. 168] gi|221314523|ref|ZP_03596328.1| GTP-binding protein EngA [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319445|ref|ZP_03600739.1| GTP-binding protein EngA [Bacillus subtilis subsp. subtilis str. JH642] gi|221323721|ref|ZP_03605015.1| GTP-binding protein EngA [Bacillus subtilis subsp. subtilis str. SMY] gi|321311754|ref|YP_004204041.1| GTP-binding protein Der [Bacillus subtilis BSn5] gi|1730915|sp|P50743|DER_BACSU RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|1146219|gb|AAC83966.1| similar to Escherichia coli GTP-binding protein Era; putative [Bacillus subtilis subsp. subtilis str. 168] gi|2634702|emb|CAB14200.1| GTPase essential for ribosome 50S subunit assembly [Bacillus subtilis subsp. subtilis str. 168] gi|320018028|gb|ADV93014.1| GTP-binding protein Der [Bacillus subtilis BSn5] Length = 436 Score = 265 bits (678), Expect = 9e-69, Method: Compositional matrix adjust. Identities = 148/460 (32%), Positives = 244/460 (53%), Gaps = 29/460 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST+FNR+ +++++V + PG+TRDR+Y A FN++DT GI G Sbjct: 6 VAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGD 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +A Q+ Q E+A++EA +I+F+++ + G+T D + L + P+++ NK+D Sbjct: 66 EPFLA-QIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNT 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + N Y+ YSL F E IS H LG +L + + FK I K NEE Sbjct: 125 EMRANIYDFYSLGFGEPYPISGTHGLGLGDLLDAVAEHFKN---------IPETKYNEEV 175 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 ++ ++GRPNVGKS+L+N +LG R++ + +G TRD+V Sbjct: 176 -------------------IQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 S+ + I DTAGMRK ++ E+ E+ +V ++++++ E V+LD +QD Sbjct: 217 SFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDK 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 RI G AVV+ +NKWD V + +++ + + I +S T + + Sbjct: 277 RIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRI 336 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 LM ++++ ++ R+ T+ LN + NP PT ++ Y TQ+ PPSF+ Sbjct: 337 HTLMPAIIKASENHSLRVQTNVLNDVIMDAVAMNPTPTHNGSRLKIYYATQVSVKPPSFV 396 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 +F P + SY+R+L NR+R F G PI++ ++ K Sbjct: 397 VFVNDPELMHFSYERFLENRIRDAFGFEGTPIKIFARARK 436 >gi|33593199|ref|NP_880843.1| GTP-binding protein EngA [Bordetella pertussis Tohama I] gi|33597408|ref|NP_885051.1| GTP-binding protein EngA [Bordetella parapertussis 12822] gi|33602148|ref|NP_889708.1| GTP-binding protein EngA [Bordetella bronchiseptica RB50] gi|41017018|sp|Q7VWL4|DER_BORPE RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|41017021|sp|Q7W6Q0|DER_BORPA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|41017022|sp|Q7WHN4|DER_BORBR RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|33563574|emb|CAE42473.1| putative GTP-binding protein [Bordetella pertussis Tohama I] gi|33573835|emb|CAE38143.1| putative GTP-binding protein [Bordetella parapertussis] gi|33576586|emb|CAE33664.1| putative GTP-binding protein [Bordetella bronchiseptica RB50] gi|332382610|gb|AEE67457.1| GTP-binding protein EngA [Bordetella pertussis CS] Length = 451 Score = 265 bits (678), Expect = 9e-69, Method: Compositional matrix adjust. Identities = 154/468 (32%), Positives = 249/468 (53%), Gaps = 26/468 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTLFNRL + + A+V + G+TRDR YG+ + F ++DT G Sbjct: 7 VALVGRPNVGKSTLFNRLTRSRAALVADFSGLTRDRHYGEGRVGDTPFLVIDTGGFEPVA 66 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIP-IIIVSNKMDT 123 I +M QT AI EA +++FL+D++AG+ +DH I LRK +++ NK + Sbjct: 67 KDGILAEMARQTRQAIAEADVVVFLVDARAGVNAHDHEIARLLRKSGQQRVLLAVNKAEG 126 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + L E ISA H G +++IE Sbjct: 127 MGVGNATGDFHELGLGEPHPISAAHGDGI-------------------VDLIEIALSGLV 167 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 +P + + + V + +++A+VGRPNVGKSTLIN LLG R++ G TRD++ Sbjct: 168 APPADTGEQLEQDV--VDHRIKLAIVGRPNVGKSTLINTLLGEERVIAFDMPGTTRDAIE 225 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 I + + DTAG+RK ++ E++E+ +V K++Q++ ++++DA +QD Sbjct: 226 IDFERDGRKYTLIDTAGLRKRGKVFEAIEKFSVIKTLQAIEASNVVLLMIDAQAEVSEQD 285 Query: 304 LRIVDSVFNTGHAVVLALNKWD-MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 I V TG AVV+A+NKWD + SD+ ++ + ++ L G ++TIS G+ Sbjct: 286 AHIAGFVLETGRAVVVAINKWDGLDSDQRERIEREFQRKLRFL---GFARMHTISALKGQ 342 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 G+ L+ SV + +++T L LQ Q PPP +++Y Q +PP Sbjct: 343 GVKPLLKSVNAAHAAAFAKLSTPRLTRELQAAVEQQPPPRKGIFRPKMRYAHQGGQNPPL 402 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +I + +P+SY+RYL R R F L+G P+R+ F+SS+NPY+++ Sbjct: 403 IVIHGNALDAVPDSYRRYLETRFRNAFDLAGTPLRIEFKSSRNPYVQE 450 >gi|120610115|ref|YP_969793.1| GTP-binding protein EngA [Acidovorax citrulli AAC00-1] gi|166224298|sp|A1TM31|DER_ACIAC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|120588579|gb|ABM32019.1| small GTP-binding protein [Acidovorax citrulli AAC00-1] Length = 447 Score = 265 bits (678), Expect = 9e-69, Method: Compositional matrix adjust. Identities = 150/467 (32%), Positives = 243/467 (52%), Gaps = 30/467 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTLFNRL K + A+V + G+TRDR YG + + ++DT G Sbjct: 5 IALVGRPNVGKSTLFNRLTKSRDAIVADFAGLTRDRHYGNGKLGKHEYIVIDTGGFEPDA 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + I ++M QT+ A+ EA +++F++D++AG++ DH I ++LR+ P ++V NK + Sbjct: 65 SSGIYREMAKQTQQAVAEADVVIFVVDARAGLSAQDHDIANYLRRLGKPCLLVGNKAEGM 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGT-SELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 E Y L E++ +SA H G S L S + + Sbjct: 125 REGVQLAEFYELGLGEVLPVSAAHGQGVRSMLESALDTL--------------------- 163 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 + KP+R+AV GRPNVGKSTLIN LG RL+ G TRD++S Sbjct: 164 ----QLPEPEDEPEDGEDKPIRLAVAGRPNVGKSTLINTWLGEERLVAFDMPGTTRDAIS 219 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + + E+ DTAG+R+ ++ E++E+ +V K++Q++ + ++LLDAT QD Sbjct: 220 VPFERNGQQFELIDTAGLRRKGKVFEAIEKFSVVKTLQAIESANVVLLLLDATQGVTDQD 279 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 I + +G AVVLA+NKWD V D + + + + + ++ IS + +G Sbjct: 280 AHIAGYILESGRAVVLAVNKWDAVDDYGRQMLERSIETRLSFLKFASLHF--ISAKKRQG 337 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNS-WLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 L L S+ + +K ++ T L L+ Q Q P + R +++Y Q +PP Sbjct: 338 LGPLWTSIAQAHKAATCKMPTPVLTRLLLEAVQFQAPKRSGMFR-PKMRYAHQGGMNPPV 396 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIK 469 +I + ++YKR+L R R F L G P+R+ ++S+NP+ + Sbjct: 397 IVIHGNSLEHVTDAYKRFLEGRFRKEFDLVGTPLRIEMKTSRNPFAE 443 >gi|291484708|dbj|BAI85783.1| GTP-binding protein EngA [Bacillus subtilis subsp. natto BEST195] Length = 436 Score = 265 bits (678), Expect = 9e-69, Method: Compositional matrix adjust. Identities = 148/460 (32%), Positives = 244/460 (53%), Gaps = 29/460 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST+FNR+ +++++V + PG+TRDR+Y A FN++DT GI G Sbjct: 6 VAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGD 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +A Q+ Q E+A++EA +I+F+++ + G+T D + L + P+++ NK+D Sbjct: 66 EPFLA-QIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNT 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + N Y+ YSL F E IS H LG +L + + FK I K NEE Sbjct: 125 EMRANIYDFYSLGFGEPYPISGTHGLGLGDLLDAVAEHFKN---------IPETKYNEEV 175 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 ++ ++GRPNVGKS+L+N +LG R++ + +G TRD+V Sbjct: 176 -------------------VQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 S+ + I DTAGMRK ++ E+ E+ +V ++++++ E V+LD +QD Sbjct: 217 SFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDK 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 RI G AVV+ +NKWD V + +++ + + I +S T + + Sbjct: 277 RIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRI 336 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 LM ++++ ++ R+ T+ LN + NP PT ++ Y TQ+ PPSF+ Sbjct: 337 HTLMPAIIKASENHSLRVQTNVLNDVIMDAVAMNPTPTHNGSRLKIYYATQVSVKPPSFV 396 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 +F P + SY+R+L NR+R F G PI++ ++ K Sbjct: 397 VFVNDPELMHFSYERFLENRIRDAFGFEGTPIKIFARARK 436 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 53/187 (28%), Positives = 87/187 (46%), Gaps = 15/187 (8%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI- 60 + ++G PNVGKS+L N ++ ++ +V N G TRD + N F IVDTAG+ Sbjct: 175 VVQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMR 234 Query: 61 ADGKNCSIAKQMNDQTEL-AINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 GK ++ + L AI+ + ++ ++D + GI D I + + ++IV N Sbjct: 235 KKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVN 294 Query: 120 KMDT----RIAQRNFYE-----IYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNH 170 K D + F E LD+ I+ +SA L +H+++ I K NH Sbjct: 295 KWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSA---LTKKRIHTLMPAIIKAS-ENH 350 Query: 171 PLEMIEN 177 L + N Sbjct: 351 SLRVQTN 357 >gi|269797893|ref|YP_003311793.1| small GTP-binding protein [Veillonella parvula DSM 2008] gi|269094522|gb|ACZ24513.1| small GTP-binding protein [Veillonella parvula DSM 2008] Length = 444 Score = 265 bits (678), Expect = 9e-69, Method: Compositional matrix adjust. Identities = 163/467 (34%), Positives = 253/467 (54%), Gaps = 40/467 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTLFN +V K++++V + PG+TRDR+Y A F ++DT GI Sbjct: 6 VAVVGRPNVGKSTLFNAIVNKRISIVEDIPGVTRDRIYFDAEWLNREFTMIDTGGIEFIT 65 Query: 65 NCS--IAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 S I K M Q ELAI EA +ILF++D K GI P D + + LR PI++V NK+D Sbjct: 66 ENSHVIPKMMRLQAELAIEEADVILFVVDGKQGIVPADEEVANILRASGKPIVLVVNKID 125 Query: 123 TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 + + N YE Y+L + + ISA++ + +L K F + N +E Sbjct: 126 SVNQEPNIYEFYNLGLGDPIGISAKNLMNLGDLLDDTVKHFPP---------VGTNVDDE 176 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 ++ + +AV+GRPNVGKS+L N LLG +R++ +G TRDS+ Sbjct: 177 DT-------------------IHVAVIGRPNVGKSSLTNALLGQDRVIVSDVAGTTRDSI 217 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 W + + DTAGMR+ S+I E++E+ ++ +S++SV + +++LDA +Q Sbjct: 218 DTYWTHEGQKFVLIDTAGMRRKSKIEEAVERYSIVRSLRSVDRADIVVLVLDAQDGVTEQ 277 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMV--SDK--LNLLQDLRTKAIKNLPQIGDI-YINTIS 357 D +I + G VV+ +NKWD+V DK L +D+ + Q I + + ++ Sbjct: 278 DKKIAGYAYEAGKGVVIVVNKWDLVKKDDKTTLRFTEDIYDEL--GFLQFAPILFASALT 335 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 + L D++ V E + ++ R++T LN LQ Q NP P+ R ++ Y+TQ Sbjct: 336 KQRIHRLADMLKFVSE--QQYR-RVSTGTLNQLLQDAQTVNPVPSRNGRIPKIYYMTQAS 392 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 PP+F++F P I SY R+L NRLR +F G PIR+ + K Sbjct: 393 VKPPTFILFVNEPELIHFSYMRFLENRLRESFGFEGTPIRLVLRGKK 439 >gi|199598702|ref|ZP_03212116.1| GTP-binding protein EngA [Lactobacillus rhamnosus HN001] gi|229552181|ref|ZP_04440906.1| GTP-binding protein EngA [Lactobacillus rhamnosus LMS2-1] gi|258508385|ref|YP_003171136.1| GTP-binding protein EngA [Lactobacillus rhamnosus GG] gi|258539596|ref|YP_003174095.1| GTP-binding protein EngA [Lactobacillus rhamnosus Lc 705] gi|199590390|gb|EDY98482.1| GTP-binding protein EngA [Lactobacillus rhamnosus HN001] gi|229314483|gb|EEN80456.1| GTP-binding protein EngA [Lactobacillus rhamnosus LMS2-1] gi|257148312|emb|CAR87285.1| GTP-binding protein EngA [Lactobacillus rhamnosus GG] gi|257151272|emb|CAR90244.1| GTP-binding protein EngA [Lactobacillus rhamnosus Lc 705] gi|259649699|dbj|BAI41861.1| GTP-binding protein EngA [Lactobacillus rhamnosus GG] Length = 435 Score = 265 bits (678), Expect = 9e-69, Method: Compositional matrix adjust. Identities = 142/461 (30%), Positives = 248/461 (53%), Gaps = 30/461 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AIVG PNVGKST+FNR++ +++++V + PG+TRDR+YG++ G F ++DT GI G Sbjct: 5 TLAIVGRPNVGKSTIFNRILGERVSIVEDTPGVTRDRIYGKSEWLGKEFAVIDTGGIDLG 64 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 +A Q+ DQ E+AI+EA +ILFL +AG+T D + L + N P+++ NK+D Sbjct: 65 DEPFLA-QIKDQAEIAIDEADVILFLTSIEAGVTDADERVAQILYRANKPVVLAVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 +++ Y+ YSL F E + +S H +G ++ + F NE Sbjct: 124 PERRQDIYDFYSLGFGEPLPLSGTHGIGLGDVLDAVLAAFP----------------NEA 167 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 S E+ ++ +++GRPNVGKS+L+N +LG NR++ G TRD++ Sbjct: 168 SADED-------------DSIKFSLIGRPNVGKSSLVNAILGENRVIVSPIEGTTRDAID 214 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + + DTAG+RK ++ E+ E+ V ++++++ + + +++A +QD Sbjct: 215 TKFEADGETFTMIDTAGIRKRGKVYENTEKYAVMRALRAIDRSDVVLFVINAEEGIREQD 274 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 ++ G +++ +NKWD + ++D + + I +S +T + Sbjct: 275 KKVAGYAHEAGRGIIIVVNKWDTLEKDNRTMKDFENLIRQEFQYLDYAPIIFVSAKTHQR 334 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 L L ++E+++ RI +S LN L P PT+ + R+ Y+TQ+ PP+F Sbjct: 335 LQSLPAMIVEVSENQTRRIQSSVLNDVLMDAITVTPTPTVNGKRLRIYYMTQVAVKPPTF 394 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 ++F P+ + SY+R+LIN+LR F SG PI + + K Sbjct: 395 VVFVNDPDLLHFSYERFLINQLRQAFDFSGTPIHVIARKRK 435 >gi|153005016|ref|YP_001379341.1| GTP-binding protein EngA [Anaeromyxobacter sp. Fw109-5] gi|152028589|gb|ABS26357.1| small GTP-binding protein [Anaeromyxobacter sp. Fw109-5] Length = 471 Score = 265 bits (678), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 149/463 (32%), Positives = 243/463 (52%), Gaps = 24/463 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTLFNRL ++ A+V + PG+TRDR Y +G ++VDT G Sbjct: 13 VALVGRPNVGKSTLFNRLAGRRAAIVQDVPGVTRDRNYADFSFDGRALSVVDTGGFEPES 72 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + Q+ Q +LA+ EA ++ ++D + G+T D ++ LR+ P+ + NK+DT Sbjct: 73 RDRLMSQVRQQAQLAVEEAAAVVLVVDGREGLTAVDRSVADLLRRAGKPLFVAVNKVDTA 132 Query: 125 IAQRN--FYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 + E Y L F E+ +SAEH G +L I + K + P Sbjct: 133 RTEEEIPLAEFYQLGFGEVHSVSAEHGRGVGDLVEAIVE--KLQLP-------------- 176 Query: 183 ESPKENITSEGKSSVKNISKP---LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITR 239 E+P E V +P +R+A+VGRPNVGKST +N LLG+ R + G TR Sbjct: 177 EAPPAPEDVEEPEEVTEADRPKGDIRLAIVGRPNVGKSTFVNSLLGHERFVVSDVPGTTR 236 Query: 240 DSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPF 299 D++ + + DTAG+R+ S I +++E +V +SM+++ E LLDAT Sbjct: 237 DAIDSLVEQRGQRFVVTDTAGIRRKSAIAQAVEAYSVVRSMKAIDRAEVVACLLDATEAG 296 Query: 300 EKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAI-KNLPQIGDIYINTISG 358 +QD R++ + A+++ +NKWD ++++ QD K + K LP + + +S Sbjct: 297 VEQDARLLGLIAEKAKALLVVINKWD-IAEREGATQDWYRKELHKRLPFVSFAPMLFVSA 355 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 + G G+ ++ + + ++ R T LN L+ Q ++P P +L Y+ Q+ Sbjct: 356 KEGRGVTRVLDRAARLVEQYRARFPTPALNELLEAIQEEHPAPLAKGHPVKLYYVAQVAY 415 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 +PP+F+I C P I E Y+R++ NR R F L +P+R+ F+ Sbjct: 416 APPTFVIQCNRPEAIGEPYRRFVENRFRDAFGLD-VPMRLVFR 457 >gi|221066038|ref|ZP_03542143.1| small GTP-binding protein [Comamonas testosteroni KF-1] gi|220711061|gb|EED66429.1| small GTP-binding protein [Comamonas testosteroni KF-1] Length = 446 Score = 265 bits (678), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 156/471 (33%), Positives = 249/471 (52%), Gaps = 35/471 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTLFNRL K + A+V + G+TRDR YGQ + ++DT G Sbjct: 5 IALVGRPNVGKSTLFNRLTKSRDAIVADFAGLTRDRHYGQGRQGKHEYIVIDTGGFEPDA 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + I K+M QT+ A+ EA +++F++D++AG++ DH I ++LR+ P I+V+NK + Sbjct: 65 SRGIFKEMAKQTQQAVAEADVVIFVLDARAGLSGQDHEIGNYLRRLGKPTILVANKAEGM 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 E Y L E+V +SA H G L + N P E ++ Sbjct: 125 KDGAQLSEFYELGLGEVVPVSAAHGQGVRSLVDAALGLL-----NLPEPEEEAFGEEDQ- 178 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 KP+R+AV GRPN GKSTLIN LG RL+ G TRD++++ Sbjct: 179 -----------------KPVRLAVAGRPNAGKSTLINTWLGEERLVAFDMPGTTRDAITV 221 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + E+ DTAG+R+ ++ E++E+ +V K++Q++ ++L+DAT QD Sbjct: 222 PFERNGQKFELIDTAGLRRKGKVFEAIEKFSVVKTLQAIEGANVVLLLIDATQGVTDQDA 281 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSD-KLNLLQ---DLRTKAIKNLPQIGDIYINTISGRT 360 I + +G +VVLA+NKWD V D + +L+ + R +K P ++ IS + Sbjct: 282 HIAGYILESGRSVVLAINKWDAVDDYQRQMLERSIETRLSFLKFAP------LHFISAQK 335 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKT-QLQNPPPTIFNRYNRLKYITQIQSS 419 +GL+ L S+++ ++ ++ T L L ++ Q Q P R +++Y Q + Sbjct: 336 RQGLEPLWKSIIQAHRAATCKMPTPVLTRILMESIQFQTPKKVGAYR-PKMRYAHQGGMN 394 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 PP +I + ++YKR+L R R F+L G P+R+ ++S NPY K Sbjct: 395 PPIIVIHGNSLELVTDAYKRFLEGRFRKEFNLVGTPLRIDLKTSHNPYADK 445 >gi|99034460|ref|ZP_01314456.1| hypothetical protein Wendoof_01000738 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 405 Score = 265 bits (678), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 154/435 (35%), Positives = 245/435 (56%), Gaps = 39/435 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PN GKSTLFNRLV +K AVV N PG+TRDR G I+ + F ++DT G D Sbjct: 4 IAIVGLPNAGKSTLFNRLVGRKAAVVSNIPGVTRDRREGMGRISDLEFKVIDTGGWNDQT 63 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N S+ Q+ +Q E +++ +++I FL+D+K + RK N P+I+V+NK ++ Sbjct: 64 NFSL--QVIEQIEFSLSNSNIIFFLVDAKVQNERNEEFAKWLKRKINKPVILVANKCESH 121 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 ++ Y + DF V ISAEH+LG +L+ + + IEN N E Sbjct: 122 KSENVDY-LQFFDFLGPVYISAEHNLGMVDLYDALAGV------------IENFNENTEL 168 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P ++ LRIA++GRPNVGKST +N LL NRL+T S+ G TRDSV I Sbjct: 169 PNNELSR------------LRIAIIGRPNVGKSTFLNGLLAENRLITSSEPGTTRDSVDI 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 +++ I + DTAG+R+ + + + LE + V+KSM+S++ +++LD+ + E+QDL Sbjct: 217 TYDHDGELITLIDTAGIRRKANVVDGLESRFVEKSMESIKRSHVVVLMLDSLVGIEQQDL 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQ--IGDIYIN----TISG 358 I ++ G +++ LNKWD++ +D R++ IK + Q + +++ TIS Sbjct: 277 SIGEAAIKGGKGIIVVLNKWDLIG------KDDRSRLIKFVKQQEVTRLFLEVPTITISA 330 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 G D++ LE+++ +I+T+ LN WL ++ P + + ++KYI QI + Sbjct: 331 LKGMRCGDVIDKCLEVSESLNKKISTAKLNKWLIDAVGKHSHPLVKGKAVKMKYIAQIGT 390 Query: 419 SPPSFLIFCTFPNKI 433 PP+F + C P + Sbjct: 391 KPPAFSLICNIPESV 405 Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 32/57 (56%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAG 260 L+IA+VG PN GKSTL NRL+G + + G+TRD + ++ DT G Sbjct: 2 LKIAIVGLPNAGKSTLFNRLVGRKAAVVSNIPGVTRDRREGMGRISDLEFKVIDTGG 58 >gi|70732274|ref|YP_262030.1| GTP-binding protein EngA [Pseudomonas fluorescens Pf-5] gi|123653208|sp|Q4K6V3|DER_PSEF5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|68346573|gb|AAY94179.1| GTP-binding protein EngA [Pseudomonas fluorescens Pf-5] Length = 490 Score = 265 bits (678), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 166/469 (35%), Positives = 253/469 (53%), Gaps = 14/469 (2%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ IA+VG PNVGKSTLFNRL + + A+VG+ G+TRDR YG+A G + ++DT GI Sbjct: 1 MVPVIALVGRPNVGKSTLFNRLTRTRDAIVGDLSGLTRDRQYGEAKWQGRTYILIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + G + ++M +Q+ LAI EA ++LFL+D+KAG T D I LRK+N +++NK Sbjct: 61 S-GDEHGMDEKMAEQSLLAIEEADVVLFLVDAKAGFTAADQMIGEHLRKRNKTSYVIANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D E L + + I+ H G +++ + F + + P E E Sbjct: 120 VDNIDPDMARAEFAPLGMGDAIPIAGAHGRGITQMLEIALSEFPKDDADEPEEGEEEIVA 179 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 E K K +K IA++GRPNVGKSTL+NR+LG +R++ Q G TRD Sbjct: 180 EGEEAKRIPGPSEKDGIK-------IAIIGRPNVGKSTLVNRMLGEDRVIVYDQPGTTRD 232 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ I + + + DTAG+RK +I E +E+ +V K++Q+++ I ++DA Sbjct: 233 SIYIPFERNDEKYTLIDTAGVRKRGKIHEEVEKFSVVKTLQAIKDANVVIFVMDAREGVV 292 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMV--SDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 DL ++ G A+V+ALNKWD + S++ + +L+ + DI+ IS Sbjct: 293 DHDLNLLGFALEAGRALVIALNKWDGMQPSERDYVKTELQRRLF--FVDFADIHF--ISA 348 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 G G+ +L SV K TR TS L L+ ++ PP + NR +L+Y + Sbjct: 349 LHGTGVGNLYQSVQNSFKSAVTRWPTSRLTQILEDAVGEHAPPMVNNRRIKLRYAHLGGA 408 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 +PP +I K+P+SY RYL N R L G PIR+ F+ +NPY Sbjct: 409 NPPLIVIHGNQVEKVPKSYVRYLENTYRRVLKLVGTPIRIEFKGGENPY 457 >gi|331005663|ref|ZP_08329030.1| GTP-binding protein EngA [gamma proteobacterium IMCC1989] gi|330420521|gb|EGG94820.1| GTP-binding protein EngA [gamma proteobacterium IMCC1989] Length = 482 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 158/470 (33%), Positives = 251/470 (53%), Gaps = 15/470 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ IA+VG PNVGKSTLFNRL +++ A+V + G+TRDR YG+ I F VDT G+ Sbjct: 1 MLPVIALVGRPNVGKSTLFNRLTRRRDAIVADFAGLTRDRQYGEVIWEERRFLFVDTGGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + G I M +Q+ LAI EA L+LF++D KAG+ P D AI LR ++IV+NK Sbjct: 61 S-GDEEGIDSAMAEQSLLAIEEADLVLFMVDCKAGLLPSDIAIAKHLRTTEKKVLIVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D Y L EI +A H G + L + + + E+ Sbjct: 120 VDGHDPDVVIGPFYELGLGEIHATTATHGRGVNLLMQQVDTCLPVVIDDVTENITEDVDT 179 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 E +E + + ++IA+VGRPNVGKSTL+NR+LG +R++ ++G TRD Sbjct: 180 TEGEDEEQLAA------------IKIAIVGRPNVGKSTLVNRMLGEDRVVVYDEAGTTRD 227 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ I++ P I DTAG+R+ I+ ++E+ ++ K++QS+ ++LLDA+ Sbjct: 228 SIYINYERHGKPYTIIDTAGIRRRKNISLTVEKFSIVKTLQSIEDANVVVLLLDASEGVV 287 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 QDL ++ V +G A+V+ALNKWD + + + ++++ + L + ++ IS Sbjct: 288 DQDLHLMGHVIESGRALVVALNKWDGLEAEFK--EYVKSELERRLRFVDFADMHFISALH 345 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G G+ +L S+ + R +T++L + LQ ++ PP + +L+Y +P Sbjct: 346 GTGVGNLYKSIEKAFASATDRFSTNHLTNVLQMATKEHQPPVVRGHRIKLRYAHAGGHNP 405 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 P +I IP Y RYL R L G PIR+ F+++ NP+ K Sbjct: 406 PIIVIHGNQTADIPGHYVRYLEKTFRRVLDLHGTPIRLQFRTADNPFANK 455 >gi|146295934|ref|YP_001179705.1| small GTP-binding protein [Caldicellulosiruptor saccharolyticus DSM 8903] gi|166224318|sp|A4XHX9|DER_CALS8 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|145409510|gb|ABP66514.1| small GTP-binding protein [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 440 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 143/453 (31%), Positives = 242/453 (53%), Gaps = 28/453 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AIVG PNVGKSTLFNRL+ ++ A+V + PGITRDR+ G+ G+ FN++DT GI Sbjct: 5 TVAIVGRPNVGKSTLFNRLIGERRAIVDDTPGITRDRIVGETEWRGITFNVIDTGGIEPY 64 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 I KQM Q + AI+ + +I+F++D K G+T D + + LR PI++ NK+D Sbjct: 65 SEDIILKQMRRQAQFAIDMSDVIIFMVDGKTGLTDADREVANMLRVSKKPIVLAVNKIDN 124 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 Q YE Y L + + +SAEH G ++ + F + + N+ E+ Sbjct: 125 ISEQPIIYEFYELGLSDPIPMSAEHGSGVGDVLDAVVSYFDK---------VGINEIEED 175 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 S +++A++G+PN GKS+L+N +LG R++ G TRD++ Sbjct: 176 S-------------------IKVAIIGKPNTGKSSLVNYILGEERVIVSDIPGTTRDAID 216 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 ++ P+ + DTAG+R+ S+I +++E+ ++ +++ ++ + ++LLD T P +QD Sbjct: 217 SYVEFEGIPLTLIDTAGLRRKSKIYDNIERYSMLRTISAIERSDICVILLDGTEPVSEQD 276 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 +I + G ++A+NKWD V + + + + L + + IS +TG Sbjct: 277 AKIAGYAYEAGKGCIIAVNKWDAVEKDEKTADEYKKQIEEKLSFLKFAPVLFISAKTGFR 336 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 + L+ +VL + + RITT +N L + PP+ + ++ Y+TQ+ PP Sbjct: 337 VKKLLETVLYVYGNYTRRITTGQINDVLAEATTIYQPPSDKGKQLKIYYMTQVGEKPPKM 396 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 IF + SY+RY+ N LR F +G+PI Sbjct: 397 AIFVNDKDLFHFSYQRYIENYLRKTFDFTGVPI 429 >gi|319763709|ref|YP_004127646.1| ribosome-associated gtpase enga [Alicycliphilus denitrificans BC] gi|330824028|ref|YP_004387331.1| ribosome-associated GTPase EngA [Alicycliphilus denitrificans K601] gi|317118270|gb|ADV00759.1| ribosome-associated GTPase EngA [Alicycliphilus denitrificans BC] gi|329309400|gb|AEB83815.1| ribosome-associated GTPase EngA [Alicycliphilus denitrificans K601] Length = 447 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 155/471 (32%), Positives = 240/471 (50%), Gaps = 36/471 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTLFNRL K + A+V + G+TRDR YG F ++DT G Sbjct: 5 IALVGRPNVGKSTLFNRLTKSRDAIVADFAGLTRDRHYGNGRQGKHEFIVIDTGGFEPDA 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + I ++M QT+ A+ EA +++F++D + G++ DH I +LR+ P ++ NK + Sbjct: 65 SSGIYREMAKQTQQAVAEADVVIFVVDVRGGLSAQDHDIAKYLRRLGKPCVLAGNKAEGM 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + E Y L E+ +SA H G L + K Sbjct: 125 QDSAHLAEFYELGLGEVHPVSAAHGQGVRSLVELALKSLA-------------------- 164 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 + G+ V + +R+AV GRPNVGKSTLIN LG RL+ G TRD++S+ Sbjct: 165 ----LPEAGEGDVVAEANVIRLAVAGRPNVGKSTLINTWLGEERLVAFDMPGTTRDAISV 220 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + E+ DTAG+R+ ++ E++E+ +V K++Q++ + ++LLDAT QD Sbjct: 221 PFERNGQKFELIDTAGLRRKGKVFEAIEKFSVVKTLQAIESANVVLLLLDATQGVTDQDA 280 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSD----KLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 I + +G AVV+A+NKWD V D +L + R +K P ++ IS Sbjct: 281 HIAGYILESGRAVVIAVNKWDAVDDYGRQQLERSIETRLSFLKFAP------LHFISAMK 334 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKT-QLQNPPPTIFNRYNRLKYITQIQSS 419 +G+ L S+++ K ++ T L LQ+ Q Q+P + R +L+Y Q + Sbjct: 335 RQGIGPLWASIVQAYKSANRKMPTPVLTRLLQEAVQFQSPKRSGMFR-PKLRYAHQGGMN 393 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 PP +I + ++YKR+L R R F L G P+R+ +SS NPY K Sbjct: 394 PPVIVIHGNSLEHVTDAYKRFLEGRFRKEFDLIGTPLRIELKSSSNPYADK 444 Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 41/124 (33%), Positives = 65/124 (52%), Gaps = 2/124 (1%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + +A+ G PNVGKSTL N + ++ V + PG TRD + NG F ++DTAG+ Sbjct: 179 VIRLAVAGRPNVGKSTLINTWLGEERLVAFDMPGTTRDAISVPFERNGQKFELIDTAGLR 238 Query: 62 DGKNC--SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 +I K +T AI A+++L L+D+ G+T D I ++ + ++I N Sbjct: 239 RKGKVFEAIEKFSVVKTLQAIESANVVLLLLDATQGVTDQDAHIAGYILESGRAVVIAVN 298 Query: 120 KMDT 123 K D Sbjct: 299 KWDA 302 >gi|194365440|ref|YP_002028050.1| GTP-binding protein EngA [Stenotrophomonas maltophilia R551-3] gi|238693498|sp|B4SSW8|DER_STRM5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|194348244|gb|ACF51367.1| small GTP-binding protein [Stenotrophomonas maltophilia R551-3] Length = 465 Score = 265 bits (676), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 162/472 (34%), Positives = 254/472 (53%), Gaps = 31/472 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIIN-GVIFNIVDTAG 59 M+ +A+VG PNVGKST+FN L + + A+V + PG+TRDR YG ++ F +VDT G Sbjct: 1 MLPLVALVGRPNVGKSTIFNALTRTRDALVHDQPGVTRDRNYGVCRLDEDNHFLVVDTGG 60 Query: 60 IADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 IA+ + +A Q A EA LILF++D++ G + D I ++LRK + P +++ N Sbjct: 61 IAE-EEEGLAGATTRQARAAAAEADLILFVVDARDGSSAMDDEILAWLRKLSRPTLLLIN 119 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNK 179 K+D E F E++ +SA H G +L + Q+ P Sbjct: 120 KIDGTDEDSVRSEFARYGFSEMLTVSAAHRQGLDDLLEEVV----QRLP----------- 164 Query: 180 RNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITR 239 EE E + N +RIA VGRPNVGKSTL+NR+LG R++ G TR Sbjct: 165 --EEGSGEEL--------DNDPNRIRIAFVGRPNVGKSTLVNRILGEERMIASDVPGTTR 214 Query: 240 DSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPF 299 DS+++ + DTAG+R+ SR+ E +E+ +V K+MQS+ C+ +++LDAT Sbjct: 215 DSIAVDLERDGREYRLIDTAGLRRRSRVDEVVEKFSVVKTMQSIEQCQVAVLMLDATEGV 274 Query: 300 EKQDLRIVDSVFNTGHAVVLALNKWDMVSD-KLNLLQDLRTKAIKNLPQIGDIYINTISG 358 QD ++ +V + G A+V+A+NKWD +++ + + + + + +P + IS Sbjct: 275 TDQDATVLGAVLDAGRALVIAINKWDGLTEYQREQAETMLSLRLGFVPWAESV---RISA 331 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 + G GL +L +V ++ TTS +N L+ NPPPTI ++L+Y+ + Sbjct: 332 KHGSGLRELFRAVHRAHESANKTFTTSEVNKALEVAYETNPPPTIRGHVSKLRYVHPAGA 391 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP+F++ T ++ ESYKRYL N R F L G P+ F+ NPY K Sbjct: 392 NPPTFIVHGTRLKELQESYKRYLENFFRKRFKLIGTPVSFIFREGTNPYEGK 443 >gi|73662580|ref|YP_301361.1| GTP-binding protein EngA [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|123642627|sp|Q49XS9|DER_STAS1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|72495095|dbj|BAE18416.1| putative GTPase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 436 Score = 265 bits (676), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 143/455 (31%), Positives = 245/455 (53%), Gaps = 29/455 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST+FNR+V +++++V + PG+TRDR+Y FNI+DT GI G Sbjct: 6 VAIVGRPNVGKSTIFNRVVGERVSIVEDTPGVTRDRIYSSGEWLTHDFNIIDTGGIEIG- 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + Q+ Q E+AI+EA +I+F+++ + G+T D + L K P+++ NK+D Sbjct: 65 DAPFQTQIRAQAEVAIDEADVIIFMVNVREGLTQSDEMVAQMLYKSKKPVVLAVNKVDNP 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + Y+ YSL F + IS H LG +L + K FK++ P+ Sbjct: 125 EMRNEIYDFYSLGFGDPYPISGSHGLGLGDLLDAVVKHFKEEEPD--------------- 169 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P ++ T +R++++GRPNVGKS+L+N +LG +R++ + +G TRD+V Sbjct: 170 PYDDDT-------------IRLSIIGRPNVGKSSLVNAILGEDRVIVSNVAGTTRDAVDT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 +++ + + DTAGMRK ++ E+ E+ +V ++++++ ++++DA +QD Sbjct: 217 EYSYDDQDYVLIDTAGMRKKGKVYENTEKYSVLRALKAIERSNVILIVIDAEQGIIEQDK 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 R+ G A+V+ +NKWD V + N ++ + + K + I +S + + L Sbjct: 277 RVAGYAHEEGKAIVIVVNKWDTVDKETNTMKKFKDEVRKEFQFLDYAEIAFVSAKEKQRL 336 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 L + E ++ K R+ +S LN + NP PT R + Y TQ+ PP+F+ Sbjct: 337 RTLFPYIKEASENHKKRVQSSTLNEVVTDAISMNPTPTDKGRRLNVFYATQVAIEPPTFI 396 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 +F + SYKRYL N++R F G P+ + Sbjct: 397 VFVNDVELMHFSYKRYLENQIRAAFGFEGTPVHII 431 >gi|218516154|ref|ZP_03512994.1| GTP-binding protein EngA [Rhizobium etli 8C-3] Length = 284 Score = 265 bits (676), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 128/284 (45%), Positives = 188/284 (66%), Gaps = 1/284 (0%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +T+AIVG PNVGKSTLFNRLV KK+A+V + PG+TRDR G A + G+ F I+DTAG+ Sbjct: 1 MSFTVAIVGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRRPGDARLMGLTFTIIDTAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + S+ +M QTE AI+EA L LF++D+K G+TP D A+ LR++ P+++V+NK Sbjct: 61 EEADEESLQGRMRAQTEAAIDEADLSLFVVDAKNGLTPVDTALAEMLRRRGKPVVLVANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + R + FY+ Y+L E ISAEH G +L I + + + E + Sbjct: 121 SEARGSDSGFYDAYTLGLGEPTPISAEHGQGMLDLRDAIVEAIGKDRA-YAKEDVAVTDV 179 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 + + E + + +KPLR+A+VGRPN GKSTLINR LG +RLLTG ++GITRD Sbjct: 180 DIPHAADEGEDEDEEPAYDDTKPLRVAIVGRPNAGKSTLINRFLGEDRLLTGPEAGITRD 239 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVR 284 S+S+ W+W+ I++FDTAGMR+ +R+TE LE+ +V +++++R Sbjct: 240 SISVEWDWRGRTIKMFDTAGMRRKARVTEKLEKLSVADALRAIR 283 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 58/118 (49%), Gaps = 2/118 (1%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VGRPNVGKSTL NRL+G L G+TRD I DTAG+ + Sbjct: 5 VAIVGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRRPGDARLMGLTFTIIDTAGLEEAD 64 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 ESL+ + ++ ++ + ++ ++DA D + + + G VVL NK Sbjct: 65 E--ESLQGRMRAQTEAAIDEADLSLFVVDAKNGLTPVDTALAEMLRRRGKPVVLVANK 120 >gi|167749166|ref|ZP_02421293.1| hypothetical protein EUBSIR_00117 [Eubacterium siraeum DSM 15702] gi|167657844|gb|EDS01974.1| hypothetical protein EUBSIR_00117 [Eubacterium siraeum DSM 15702] gi|291530430|emb|CBK96015.1| ribosome-associated GTPase EngA [Eubacterium siraeum 70/3] Length = 439 Score = 265 bits (676), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 149/456 (32%), Positives = 245/456 (53%), Gaps = 30/456 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTLFNR+V K+M++V + PG+TRDR+Y +A G F +VDT GI Sbjct: 5 VAVVGRPNVGKSTLFNRIVGKRMSIVDDTPGVTRDRIYAKAEWLGKEFMLVDTGGIEPDS 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I QM Q +LAI++A +I+F+ D +G+T D + + L+K P+++ NK D Sbjct: 65 KDVILSQMRMQAQLAIDKADVIIFVTDVTSGVTANDADVAAMLQKSGKPVVLCVNKCDG- 123 Query: 125 IAQ--RNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 I + FYE Y+L + + +S+ H GT +L +F+ N P E Sbjct: 124 IGEVPPEFYEFYNLGLGDPIAVSSVHGHGTGDLLDAVFE-------NMP----------E 166 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 E+P+ + + +++AV+G+PN GKS+L+N++ G R++ + +G TRD+V Sbjct: 167 ENPQREYSEDA----------IKVAVIGKPNAGKSSLVNKIAGEQRMIVSNIAGTTRDAV 216 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + DTAG+R+ S++ E +E+ +V ++ +V + ++++DAT F +Q Sbjct: 217 DTVIERDGQEYVLIDTAGIRRKSKVNEQIEKYSVLRAYMAVDRADVCVIMIDATEGFTEQ 276 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D ++ G A V+A+NKWD V +Q+ K + + IS TG+ Sbjct: 277 DSKVAGYAHEQGKASVIAINKWDAVEKDGKTMQEFTKKLEVDFSFMSYAPFVFISALTGQ 336 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 +D L + RI+T LN L + PP+ + +L Y+TQ + PP+ Sbjct: 337 RVDKLFEQIKYTYSQNIRRISTGTLNDMLGYATARVQPPSDKGKRLKLYYMTQASAKPPT 396 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 F+IFC SY+RY+ N++R +F L G PI++ Sbjct: 397 FVIFCNDKELFHYSYQRYIENQIRESFGLDGTPIKI 432 >gi|322381805|ref|ZP_08055759.1| EngA-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154193|gb|EFX46515.1| EngA-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 443 Score = 265 bits (676), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 145/454 (31%), Positives = 233/454 (51%), Gaps = 28/454 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKST+FN+++ ++A+V + PG+TRDRLYG F+I+DT GI Sbjct: 9 IAIVGRPNVGKSTIFNKIIGDRLAIVEDRPGVTRDRLYGIGEWMNREFSIIDTGGIEIDG 68 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I K + Q ELAI E+ +I+F++D+K+G+TP D + L + P+++ NK+D Sbjct: 69 EDHIMKSVKVQAELAIEESDVIIFMVDAKSGLTPSDEEVAELLYRSRKPVVLAVNKVDNL 128 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 Q YE Y L F + + IS H LG +L + F ++ E + Sbjct: 129 KRQDEIYEFYGLGFGDPIPISGAHGLGIGDLLEAASRHFPEEEDGEYGEEV--------- 179 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 +R+A++GRPNVGKS+L+N +LG R++ Q+G TRD++ Sbjct: 180 -------------------IRVALIGRPNVGKSSLVNAILGEERVIVSDQAGTTRDAIDT 220 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + I DTAGMRK ++ E+ E+ +V ++++++ + +V+L+ +QD Sbjct: 221 PFEKDGQKYVIIDTAGMRKRGKVYENTEKYSVMRALKAIERADVVLVVLNGEEGIIEQDK 280 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 I G A + +NKWD+V +Q + + + +S +T + L Sbjct: 281 HIAGYAHEAGKAALFVVNKWDVVEKDDKTMQRFTQNIRDHFLFMTYAPVTFVSAKTHQRL 340 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 L+ V + + R+ T LN + + NPPPT R R+ Y TQ+ PP F+ Sbjct: 341 HRLLPIVDRVAEKHAMRVQTHVLNDVVSDAVIFNPPPTDKGRRLRINYATQVSVKPPCFV 400 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 F P+ + SY+RYL N++R F G P+R+ Sbjct: 401 FFVNDPDLMHFSYERYLENKIRAAFDFEGTPVRL 434 >gi|213155967|ref|YP_002318012.1| small GTP-binding protein [Acinetobacter baumannii AB0057] gi|301346486|ref|ZP_07227227.1| GTP-binding protein EngA [Acinetobacter baumannii AB056] gi|301594209|ref|ZP_07239217.1| GTP-binding protein EngA [Acinetobacter baumannii AB059] gi|254783128|sp|B7I5H1|DER_ACIB5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|213055127|gb|ACJ40029.1| small GTP-binding protein [Acinetobacter baumannii AB0057] Length = 469 Score = 265 bits (676), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 153/465 (32%), Positives = 254/465 (54%), Gaps = 33/465 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA++G PNVGKSTLFN++ K + A+V + G+TRDR YG A F +VDT GI + + Sbjct: 5 IALIGRPNVGKSTLFNQITKSRDALVADFAGLTRDRKYGDATYQNKSFIVVDTGGIGESE 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 C I M +Q++ AINEA +I+F++D++AG+ D I LR I +V+NK+D Sbjct: 65 -CGIDNYMAEQSKTAINEADIIIFVVDARAGLLASDEQIARELRTLGKKIYLVANKVDGV 123 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 A+ E Y L E ++++A H G ++ LE + + +E+ Sbjct: 124 HAEAALVEFYKLGMGEPLQVAASHGRGVQQM----------------LEDVLQDIPEDEN 167 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P+E+ G LR+A++GRPNVGKSTL+NRLLG +R++ Q G TRDS+ I Sbjct: 168 PEEHDKDTG----------LRLAIIGRPNVGKSTLVNRLLGEDRVVAFDQPGTTRDSIYI 217 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + + DTAG+R+ ++ E +E+ ++ K++Q+++ +V++DA +QDL Sbjct: 218 PFEREGRKYTLIDTAGVRRKGKVDEMIEKFSIVKTLQAMKDAHVVVVVVDAREGIVEQDL 277 Query: 305 RIVDSVFNTGHAVVLALNKWDMVS--DKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 ++ G A+V+A+NKWD +S D+ D+ + I I+ IS G Sbjct: 278 HLIGYALEAGRAMVIAINKWDNMSEYDRKQCKLDVE----RRFDFIPWARIHLISALHGT 333 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 G+ +L S+ + +++ + L L Q+ PPT+ R +++Y +PP+ Sbjct: 334 GVGELYPSIHRAYESANLKVSPAKLTQILNDATDQHQPPTVQGRRIKMRYAHMGGQNPPT 393 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 +I +K P Y+RYL N R + L G P+++ F++S+NP+ Sbjct: 394 IVIHGNKVDKTPADYRRYLENVFRKVYKLEGTPVKIEFKTSENPF 438 >gi|332527857|ref|ZP_08403894.1| GTP-binding protein Der [Rubrivivax benzoatilyticus JA2] gi|332112434|gb|EGJ12227.1| GTP-binding protein Der [Rubrivivax benzoatilyticus JA2] Length = 447 Score = 265 bits (676), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 158/471 (33%), Positives = 238/471 (50%), Gaps = 33/471 (7%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M IA+VG PNVGKSTLFNR+ K + A+V + G+TRDR YG A + G F +VDT G Sbjct: 1 MKPVIALVGRPNVGKSTLFNRITKSRDAIVADFAGLTRDRHYGDARLGGREFIVVDTGGF 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 K + +M QT A+ EA +++F+ D +AG++ DH I FLR + +I+ NK Sbjct: 61 EPEKPSGVVAEMAKQTRQAVAEADVVVFVADLRAGVSAQDHDIARFLRTQQKKVILAVNK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + E + L E +SA H G L LE + Sbjct: 121 AEGMAESPLLAEFHELGIGEPHPLSASHGQGVRSLLEAA------------LEDFDFGDE 168 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 +EE + + + P+R+AV GRPNVGKSTLIN LG RL+ Q G TRD Sbjct: 169 DEEGAEPDADA-----------PIRLAVAGRPNVGKSTLINAWLGEERLVAFDQPGTTRD 217 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 ++ +S + E+ DTAG+R+ ++ E++E+ +V K++Q++ ++++DAT+ Sbjct: 218 AIKVSLEREGRRFELIDTAGLRRKGKVFEAIEKFSVVKTLQAIADANVVVLMVDATVGVS 277 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSD----KLNLLQDLRTKAIKNLPQIGDIYINTI 356 +QD I V +G AVVLALNKWD + +L + R +K P + I Sbjct: 278 EQDAHIAGYVLESGRAVVLALNKWDATDEYQRQQLQRSIESRLAFLKFAPLL------QI 331 Query: 357 SGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQI 416 S + GL L ++L + ++ T L L P +++Y Q Sbjct: 332 SAKKRTGLTALWKAILHAHASATVKMPTPVLTRLLIDAVQHQAPRRDGAFRPKMRYAHQG 391 Query: 417 QSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 +PP +I + I ++YKRYL R R +F L G P+R+ F+SSKNP+ Sbjct: 392 GMNPPLVVIHGNSLDHITDAYKRYLEGRFREHFKLVGTPMRIEFRSSKNPF 442 >gi|315225621|ref|ZP_07867430.1| ribosome-associated GTPase EngA [Capnocytophaga ochracea F0287] gi|314944438|gb|EFS96478.1| ribosome-associated GTPase EngA [Capnocytophaga ochracea F0287] Length = 434 Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 147/461 (31%), Positives = 243/461 (52%), Gaps = 29/461 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +AIVG PNVGKST FNRL+K++ A+V G+TRDR YG+ NGV F+++DT G Sbjct: 1 MSAIVAIVGRPNVGKSTFFNRLIKRREAIVDAVSGVTRDRHYGKTDWNGVSFSVIDTGGY 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 G + S K++N Q LAI+EA I+F+++ + G+T D ++ LRK PI++ NK Sbjct: 61 LAGGDDSFEKEINKQVALAIDEADAIIFMVNVEEGLTGMDESVAELLRKCRKPILVAVNK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D+ + + +E Y+L F+ + +S+ + GT EL + + K Sbjct: 121 VDSNNRRNDMHEFYALGFEHLYALSSVNGSGTGELLDDLVALLPVK-------------- 166 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 E+ ++ + R AVVGRPN GKS+ IN L+G +R + +G TRD Sbjct: 167 -EQQEEDTLP--------------RFAVVGRPNAGKSSFINALIGEDRYIVTDIAGTTRD 211 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 ++ +N + DTAG+R+ +++ E LE +V +S++++ + I++LDAT FE Sbjct: 212 AIDTKYNRFGFEFNLVDTAGIRRKAKVKEDLEFYSVMRSIRAIEHSDVCILMLDATRGFE 271 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 QD I +V+ +NKWD+V + N + K + D+ I +S Sbjct: 272 SQDANIFWLAQRNRKGIVILVNKWDLVEKENNTAKQYEAAIRKEIEPFTDVPILFVSALN 331 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 + + + + + + RI T LN + PPP I +Y ++K+ TQ+ + Sbjct: 332 KQRIYKAIETAVAVYNNRTKRIPTRKLNEVMLPIIENYPPPAIKGKYIKIKFCTQLPTPM 391 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 P F F P + + Y+R++ N+LR NF +G+PI + F+ Sbjct: 392 PQFAFFANLPQYVKDPYRRFIENKLRENFDFNGVPIDVYFR 432 >gi|332799113|ref|YP_004460612.1| GTP-binding protein engA [Tepidanaerobacter sp. Re1] gi|332696848|gb|AEE91305.1| GTP-binding protein engA [Tepidanaerobacter sp. Re1] Length = 439 Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 156/457 (34%), Positives = 244/457 (53%), Gaps = 30/457 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M + +A+VG PNVGKSTLFNR++ K++++V + PG+TRDR+YG+A NG F +VDT G+ Sbjct: 1 MSFIVAVVGKPNVGKSTLFNRIIGKRISIVDDKPGVTRDRIYGEAEWNGKKFTMVDTGGV 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 I QM Q + AI A+LILF++D K G+TP D + LR+ P+++V NK Sbjct: 61 EPASKDIILSQMKRQADFAIETANLILFMVDGKEGLTPTDLDVAQILRRSGKPVLLVVNK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D YE Y L F + + ISA H L +L I Y P Sbjct: 121 VDNYTNTAYDYEFYKLGFGDPIFISAVHGLAVGDLLDKI-----TDYIEEP--------- 166 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 +I SE + +K +A++G+PNVGKS+L+N +LG R++ G TRD Sbjct: 167 -------HILSEDEDIIK-------VAIIGKPNVGKSSLLNAILGEERVIVSDIPGTTRD 212 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 ++ + + DTAG+RK SRI+E +E + +++ ++ + +++LDA+ Sbjct: 213 AIDSYFEINGKKMLFIDTAGLRKKSRISEDVEYYSTVRALGAIDRADVVLMVLDASQNIS 272 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKN-LPQIGDIYINTISGR 359 +QD RI G AV++ +NKWD++ DK + D +K IKN L + I +S + Sbjct: 273 EQDKRIAGIAHEAGKAVIIIVNKWDLI-DKDSHTTDEFSKKIKNELAFMQYAPIVYVSAK 331 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 TG+ + ++ + + + R+ TS LN +++ + PP+I + ++ Y TQ Sbjct: 332 TGQRVGRILELINFVMDNYTFRVKTSLLNELVREATAVSEPPSIKGKKLKIFYATQTGIK 391 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 PP+F+ F SY RYL N LR F G PI Sbjct: 392 PPTFIFFVNDIKLFHFSYARYLENTLRQTFGFEGTPI 428 >gi|72161614|ref|YP_289271.1| GTP-binding protein EngA [Thermobifida fusca YX] gi|71915346|gb|AAZ55248.1| Small GTP-binding protein domain:GTP-binding [Thermobifida fusca YX] Length = 463 Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 149/457 (32%), Positives = 242/457 (52%), Gaps = 30/457 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKS+L NR++ ++ AVV + PG+TRDR+ A G F +VDT G + Sbjct: 24 VAVVGRPNVGKSSLVNRIIGRREAVVEDVPGVTRDRVAYDANWQGREFTLVDTGGW-ETN 82 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +A + Q E A A +ILF++D+ GIT D A+T LR P+++ +NK+D Sbjct: 83 AKGLAAMVARQAEYAAETADVILFVVDATVGITDEDEAVTRVLRATKRPVVLAANKVDGP 142 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + E+++L E +SA H G +L + ++ P PLE Sbjct: 143 LGDADAMELWNLGVGEPYPVSALHGRGIGDLLDAVLDAMPKEPP--PLEE---------- 190 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 + P R+A+VGRPNVGKS+L+N+L G R++ S +G TRD+V Sbjct: 191 -------------AAVDGPRRVALVGRPNVGKSSLLNKLAGEERVVVDSVAGTTRDAVDE 237 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + DTAG+R+ R + + ++ ++ E +VLLDA+ P +QDL Sbjct: 238 LVELGGKTWKFIDTAGIRRRFRALQGADYYATMRTATALERAEVAVVLLDASEPLAEQDL 297 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 RI+D V G A+VLA NKWD++ D+ L + + L ++ IS +TG + Sbjct: 298 RIIDQVIEAGRALVLAFNKWDLLDDERRYY--LEKEIDRQLFRVSWAPRVNISAKTGRHV 355 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 + L+ ++ + + W+TRI+T LN+W ++ PPP R ++ + TQ PP F+ Sbjct: 356 ERLVPAIEQGLENWETRISTGRLNAWFKELVSAVPPPARGGRQTKILFATQAGVRPPHFV 415 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 +F T + ++Y+R++ RLR +F G PI++ + Sbjct: 416 LFTT--GFLEDNYRRFIERRLREDFGFEGTPIKLTMR 450 >gi|319941508|ref|ZP_08015835.1| GTP-binding protein engA [Sutterella wadsworthensis 3_1_45B] gi|319804982|gb|EFW01821.1| GTP-binding protein engA [Sutterella wadsworthensis 3_1_45B] Length = 451 Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 156/477 (32%), Positives = 245/477 (51%), Gaps = 37/477 (7%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ IA+VG PNVGKST FNRL + + A+V + PG+TRDR YGQ + + +VDT G Sbjct: 1 MLPVIALVGRPNVGKSTFFNRLTRSRDAIVADFPGLTRDRQYGQGRVGPGPYIVVDTGGF 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + I + M Q ELAI EA ++LFL D++AG+TP D I LR+ + P++++ NK Sbjct: 61 EPVRTEGIVQAMAGQAELAIEEADVVLFLTDARAGLTPQDIRIAQHLRRADRPVVLLVNK 120 Query: 121 MD--TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 + T A+ FYE L E +S H G + + F + +P Sbjct: 121 AEGLTETAKAEFYE---LGLGEPHLVSGAHGQGVRDALDLAFSCLPEDFP---------- 167 Query: 179 KRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 + + +++ + GRPN GKSTLIN L+G R++ G T Sbjct: 168 ----------FDEPEAEEDDDGPRRIKVTLAGRPNAGKSTLINALVGEERVIAFDMPGTT 217 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RD++ I + + P E+ DTAG+RK R+ E++E+ +V K++Q++ I+++DA Sbjct: 218 RDAIKIDFEYDGRPYELVDTAGLRKKGRVFEAVEKFSVVKTLQAIEDANVVILVVDAKEG 277 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVS----DKLNLLQDLRTKAIKNLPQIGDIYIN 354 + D I V G A+V+A+NKWD++ ++ NL + + ++ I Sbjct: 278 VSEGDAHIAGYVLEAGRALVVAVNKWDLLDSYERERFNLDLERKLHFLRWARMI------ 331 Query: 355 TISGRTGEGLDDLMVSVLEINKLWKTRITTSYLN-SWLQKTQLQNPPPTIFNRYNRLKYI 413 IS GL+ LM +V E + ++ T L + L+ Q Q PP R + +Y Sbjct: 332 RISALKRNGLNHLMRAVDEAHAAAYAKLPTPKLTRALLEAVQRQQPPRAKGGR-PKPRYA 390 Query: 414 TQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 Q S+PP +I I ESY+RYL R F+L+G P+R+ F++ NPY+ + Sbjct: 391 HQGGSNPPVIVIHGNALEDIGESYRRYLEGYFRDTFNLAGTPLRVEFRTKANPYVDE 447 >gi|160942963|ref|ZP_02090201.1| hypothetical protein FAEPRAM212_00440 [Faecalibacterium prausnitzii M21/2] gi|158445657|gb|EDP22660.1| hypothetical protein FAEPRAM212_00440 [Faecalibacterium prausnitzii M21/2] gi|295103496|emb|CBL01040.1| ribosome-associated GTPase EngA [Faecalibacterium prausnitzii SL3/3] Length = 447 Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 152/456 (33%), Positives = 240/456 (52%), Gaps = 31/456 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTLFN+L +++A+V + PGITRDR++ NG F +VDT GI Sbjct: 6 VAVVGRPNVGKSTLFNKLCGQRLAIVEDTPGITRDRIFANCEWNGHEFLLVDTGGIEPKA 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD-T 123 I M +Q ++AI+ A I+ + D + G+T D + LR+ + PII+ NK D Sbjct: 66 TEGILAHMREQAQIAIDTADCIIMVTDVRNGLTAADEDVAHMLRRSHKPIILAVNKCDKV 125 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 A YE Y+L F E++ IS+ H GT +L + L+ E + Sbjct: 126 GEAPMELYEFYNLGFDEVMPISSVHGHGTGDLLDAVCA---------HLDFSETVVEEDR 176 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 P +A++GRPNVGKS+L NR+LG NR++ +++G TRD++ Sbjct: 177 IP--------------------VAIIGRPNVGKSSLTNRILGENRMIVANEAGTTRDAID 216 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + DTAG+RK S I++ LE+ V +++ +V ++L+DAT+ F +QD Sbjct: 217 TPVDNAYGKFIFTDTAGLRKRSNISDGLERYMVVRALAAVERSRVALILVDATVGFTEQD 276 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDK-LNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 ++ G A ++ +NKWD V K N ++ R + +G I IS +TG Sbjct: 277 SKVAGYAHEQGKACIIVVNKWDAVEGKETNTMELQRRGYAECFSFMGYAPIIFISAQTGY 336 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 ++ LM + +++ R+ T LN L + + PP+ R ++ Y+TQ + PP+ Sbjct: 337 NVNKLMQLIRDVDAENGARVPTGVLNEMLARATARMQPPSDKGRRLKIYYLTQASTRPPT 396 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 F+ F + SY+RYLIN++R NF L PIR+ Sbjct: 397 FVAFVNAKHLFHFSYQRYLINQIRENFGLEHTPIRL 432 >gi|169334783|ref|ZP_02861976.1| hypothetical protein ANASTE_01189 [Anaerofustis stercorihominis DSM 17244] gi|169257521|gb|EDS71487.1| hypothetical protein ANASTE_01189 [Anaerofustis stercorihominis DSM 17244] Length = 439 Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 147/460 (31%), Positives = 249/460 (54%), Gaps = 28/460 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A++G PN GKSTLFN++ K++++V + PG+TRDR+ +G F ++DT GI Sbjct: 6 VALIGRPNTGKSTLFNKISGKRISIVEDTPGVTRDRIITDTSWSGNSFFLIDTGGIEPKS 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + I KQM Q LAI+ A +I+ ++D +AG+T D + + +RK P ++ NK+D+ Sbjct: 66 DDVILKQMKRQANLAIDMADVIVLVVDGRAGVTASDREVATMIRKSGKPCVLAVNKIDSF 125 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 YE Y L E + ISAEH LG +L + K F EN K EE Sbjct: 126 DIDYLRYEFYDLALGEPIGISAEHALGFGDLLDEVVKHFP-----------ENKKGVEEE 174 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 + +IAVVG+PN GKS+L+N LLG NR++ + SG TRD++ Sbjct: 175 ER-----------------TKIAVVGKPNAGKSSLVNTLLGENRVIVSNISGTTRDAIDT 217 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 +N++ + DTAG+R+ ++I + +E + +++ ++ + ++++DA QD+ Sbjct: 218 IFNYEGKNYTLIDTAGIRRKAKIYDDIEHYSTIRAIGAIERADICLLMIDAMEGVTDQDV 277 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 +I + + AV++ +NKWD+V + N ++D+ K +L + I IS + Sbjct: 278 KIAGLIKDRYKAVIIVINKWDLVEKETNTMKDMEKKVRSSLYFLDFAPILFISATEKKRT 337 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 LM + E+ + RITT LN + + N PP+ R ++ Y +Q+ ++PP+F+ Sbjct: 338 HKLMPLIEEVLTEYGKRITTGLLNEIMGDAVMMNNPPSKGTRRMKIFYTSQVSTAPPTFV 397 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 IF P ++Y RYL N+LR F+ G PI++ ++ + Sbjct: 398 IFVNDPELEQDAYSRYLTNKLREAFTFLGSPIKLIYRKKQ 437 >gi|291557289|emb|CBL34406.1| ribosome-associated GTPase EngA [Eubacterium siraeum V10Sc8a] Length = 439 Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 148/456 (32%), Positives = 245/456 (53%), Gaps = 30/456 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTLFNR+V K+M++V + PG+TRDR+Y +A G F +VDT GI Sbjct: 5 VAVVGRPNVGKSTLFNRIVGKRMSIVDDTPGVTRDRIYAKAEWLGKEFMLVDTGGIEPDS 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I QM Q +LAI++A +I+F+ D +G+T D + + L+K P+++ NK D Sbjct: 65 KDVILSQMRMQAQLAIDKADVIIFVTDVTSGVTANDADVAAMLQKSGKPVVLCVNKCDG- 123 Query: 125 IAQ--RNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 I + FYE Y+L + + +S+ H GT +L +F+ N P E Sbjct: 124 IGEVPPEFYEFYNLGLGDPIAVSSVHGHGTGDLLDAVFE-------NMP----------E 166 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 E+P+ + + +++AV+G+PN GKS+L+N++ G R++ + +G TRD+V Sbjct: 167 ENPQREYSEDA----------IKVAVIGKPNAGKSSLVNKIAGEQRMIVSNIAGTTRDAV 216 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + DTAG+R+ S++ E +E+ +V ++ ++ + ++++DAT F +Q Sbjct: 217 DTVIERDGQEYVLIDTAGIRRKSKVNEQIEKYSVLRAYMAIDRADVCVIMIDATEGFTEQ 276 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D ++ G A V+A+NKWD V +Q+ K + + IS TG+ Sbjct: 277 DSKVAGYAHEQGKASVIAINKWDAVEKDGKTMQEFTKKLEVDFSFMSYAPFVFISALTGQ 336 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 +D L + RI+T LN L + PP+ + +L Y+TQ + PP+ Sbjct: 337 RVDKLFEQIKYTYSQNIRRISTGTLNDMLGYATARVQPPSDKGKRLKLYYMTQASAKPPT 396 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 F+IFC SY+RY+ N++R +F L G PI++ Sbjct: 397 FVIFCNDKELFHYSYQRYIENQIRESFGLDGTPIKI 432 >gi|325915367|ref|ZP_08177684.1| small GTP-binding protein domain/GTP-binding hypothetical protein [Xanthomonas vesicatoria ATCC 35937] gi|325538414|gb|EGD10093.1| small GTP-binding protein domain/GTP-binding hypothetical protein [Xanthomonas vesicatoria ATCC 35937] Length = 465 Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 160/473 (33%), Positives = 251/473 (53%), Gaps = 33/473 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVI-FNIVDTAG 59 M+ +A+VG PNVGKST+FN L + + A+V + PG+TRDR YG ++ F +VDT G Sbjct: 1 MLPLVALVGRPNVGKSTIFNALTRTRDALVHDQPGVTRDRNYGVCRLDEQQPFIVVDTGG 60 Query: 60 IADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 IA G +A Q A EA L+LF++D + G + D I ++LRK P ++V N Sbjct: 61 IA-GDEEGLAGATARQARAAAGEADLVLFVVDGREGASSLDDEILAWLRKLARPTVLVIN 119 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNK 179 K+D + E F ++V +SA H G EL LE + Sbjct: 120 KIDGTDEETVRSEFARYGFSDVVALSAAHRQGIDEL----------------LEEV---- 159 Query: 180 RNEESPKENITSEGKSS-VKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 + EG + N +RIA VGRPNVGKSTL+NRLLG R++ G T Sbjct: 160 ------GARLPEEGSGELLDNDPARVRIAFVGRPNVGKSTLVNRLLGEERMIASEVPGTT 213 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RDS+++ N + DTAG+R+ ++ E++E+ + K++Q++ C+ +++LDAT Sbjct: 214 RDSIAVDLERDNRQYRLIDTAGLRRRGKVEEAVEKFSAFKTLQAIEQCQVAVLMLDATEG 273 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSD-KLNLLQDLRTKAIKNLPQIGDIYINTIS 357 QD I+ ++ + G A+V+A+NKWD SD + +DL ++ + + + I+ + Sbjct: 274 VTDQDATILGAILDAGRALVVAINKWDGQSDYQRAQAEDLLSRKLGFVSWAEAVRISALH 333 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 G G+ +L ++ + +TS +N L+ NPPP+I ++L+Y+ Sbjct: 334 ---GSGMRELFQAIHRAHASATHEFSTSEVNQALEIAYETNPPPSIRGHVSKLRYVHPGG 390 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 ++PP+F++ T +PESYKRYL N R F L G P+R F+ NPY K Sbjct: 391 ANPPTFIVHGTRLKVLPESYKRYLENFFRKRFKLVGTPVRFIFREGANPYEGK 443 >gi|23099252|ref|NP_692718.1| GTP-binding protein EngA [Oceanobacillus iheyensis HTE831] gi|37999696|sp|Q8EQA8|DER_OCEIH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|22777481|dbj|BAC13753.1| GTP binding protein [Oceanobacillus iheyensis HTE831] Length = 436 Score = 264 bits (674), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 150/454 (33%), Positives = 239/454 (52%), Gaps = 29/454 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST+FNRLV +++++V + PG+TRDR+Y A FNI+DT GI G Sbjct: 6 VAIVGRPNVGKSTIFNRLVGERISIVEDIPGVTRDRIYANAEWLNHTFNIIDTGGIELGD 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + QM Q E+AI+EA +I+FL++ K GIT D + L K N P+++ NKMD Sbjct: 66 EPLLV-QMRQQAEIAIDEADVIVFLLNGKEGITSADDEVAKLLFKSNKPVVVGVNKMDNP 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 YE YSL F + IS H LG +L + F N+ EE Sbjct: 125 QMHETIYEYYSLGFGQPFPISGTHGLGLGDLLDEVVGHFP-------------NESEEEK 171 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 ++ I +++GRPNVGKS+L+N LL +R++ G TRD++ Sbjct: 172 DEDTIY---------------FSLIGRPNVGKSSLVNALLNEDRVIVSEIEGTTRDAIDT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + I DTAGMRK ++ ES E+ +V ++++++ + +VL+DA +QD Sbjct: 217 KLHRDDQDFVIIDTAGMRKRGKVYESTEKYSVLRALRAIERSDVVLVLIDAETGIREQDK 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 RI + G A+V+ +NKWD V +++ + + + +S +T + + Sbjct: 277 RIAGYAHDAGRAIVIVVNKWDTVDSNEKAMKEFEKNIRAHFQYLDYAPVVFLSAKTKKRM 336 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 L+ ++ ++ RI T+ LN + NP PT+ + ++ Y TQ+ PPSF+ Sbjct: 337 HTLVPAIKLASESHTKRIPTNVLNDVIMDAIAMNPTPTLKGKRLKVLYATQVAVQPPSFV 396 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 +F P + SY+R+L N++R F G PI++ Sbjct: 397 VFVNDPELMHFSYERFLENKIRDAFGFVGTPIKL 430 >gi|257063685|ref|YP_003143357.1| small GTP-binding protein domain/GTP-binding conserved hypothetical protein [Slackia heliotrinireducens DSM 20476] gi|256791338|gb|ACV22008.1| small GTP-binding protein domain/GTP-binding conserved hypothetical protein [Slackia heliotrinireducens DSM 20476] Length = 438 Score = 264 bits (674), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 150/457 (32%), Positives = 239/457 (52%), Gaps = 27/457 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKST NR+ A+V G+TRDR Y A GV F ++DT GI G Sbjct: 6 VAVVGRPNVGKSTFVNRIAHADDAIVHEMRGVTRDRSYHNADWRGVHFTLIDTGGIEMGD 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + + DQ +A +EA +ILF++D K GIT D + LRK + P+ ++ NKMD Sbjct: 66 DDAFQSSIRDQAFMAADEADVILFMVDGKTGITADDEEVARVLRKVDTPVFLLVNKMDNP 125 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 +E YSL + IS+ H GT +L + I + E +R +E Sbjct: 126 SKMEENWEFYSLGLGDPRSISSTHGHGTGDLLDEVVAILR-----------ELPEREDEP 174 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 +E I +A++GRPN GKS+L NRL+G +R + +G TRD++ Sbjct: 175 AEEGIN---------------VAIIGRPNAGKSSLTNRLIGRDRSIVSDVAGTTRDAIDT 219 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 I DTAG+R+ S+I E +E + ++M+++ + I+++DAT+ QD Sbjct: 220 RVEHDGKVYTIVDTAGLRRKSQIDEDVEYYSYVRAMRAIDRADVAILVMDATLGLTDQDQ 279 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 R+ G A+++ LNK D+V ++L LR + + + +IS TG+G+ Sbjct: 280 RVAGYANERGCALIILLNKRDVVESG-DVLDGLREDVGDRMTFVNYAPVISISALTGKGV 338 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 + ++ E+ + ++TS LN+WL+ + R +LKY+TQ + PP F Sbjct: 339 LRIWDAIDEVYANYSQTVSTSKLNNWLEGIRQFGHTVNKGKRTLKLKYMTQTHNQPPQFT 398 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 IFC P+ + ++Y+R+L NRLR F +G PI + F+ Sbjct: 399 IFCNHPDLVTDNYERFLENRLRKEFDFTGTPINLKFK 435 >gi|320539280|ref|ZP_08038950.1| ribosome-associated GTPase [Serratia symbiotica str. Tucson] gi|320030672|gb|EFW12681.1| ribosome-associated GTPase [Serratia symbiotica str. Tucson] Length = 495 Score = 264 bits (674), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 163/479 (34%), Positives = 256/479 (53%), Gaps = 16/479 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A + G F IVDT GI Sbjct: 1 MISVVALVGRPNVGKSTLFNRLTQTRDALVADFPGLTRDRKYGRAEVEGNEFIIVDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M Q+ LAI EA ++LF++D++AG+ P D I LR + +V NK Sbjct: 61 -DGHEDGVETRMAGQSLLAIEEADIVLFMVDARAGLMPADQGIAQHLRNRQKATFLVVNK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL--HSVIFKIFKQKYPNHPLEMIENN 178 D + YSL E+ I+A H G +L H ++ + +++ E N Sbjct: 120 TDGLDPDVVTADFYSLGLGEVYAIAASHGRGVRQLIEHVLMPFLPEKEEEVELTEEEANA 179 Query: 179 KRNEESPKENITSEGKSSVKNISK---PLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQS 235 E EN+ E + + +++A+VGRPNVGKSTL NR+LG R++ Sbjct: 180 AYWVEQNAENLEGEEDEPEDDFNPQDLAIKLAIVGRPNVGKSTLTNRILGEERVVVYDMP 239 Query: 236 GITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDA 295 G TRDS+ I + DTAG+RK ++TE++E+ +V K++Q++ ++++DA Sbjct: 240 GTTRDSIYIPMVRDEREYVLIDTAGVRKHGKVTETVEKFSVIKTLQAIEDANVVLLVIDA 299 Query: 296 TIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDK----LNLLQDLRTKAIKNLPQIGDI 351 +DL ++ + N+G ++V+ +NKWD +S++ + + DLR L + Sbjct: 300 REGISDRDLSLLGFILNSGRSLVIVVNKWDGMSEEERTHVKEMLDLR------LGFVDFA 353 Query: 352 YINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLK 411 ++ IS G G+ +L SVLE R+ TS L + + PP + R +LK Sbjct: 354 RVHFISALHGSGVGNLFESVLEAYACATHRVNTSMLTKIMHMAVDDHQPPLVRGRRVKLK 413 Query: 412 YITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 Y +PP +I + + +SYKRYL+N R + + G IR+ F+ NP+ K Sbjct: 414 YAHAGGYNPPIVVIHGNQVSDLSDSYKRYLMNYFRRSLKVMGTLIRIQFKEGDNPFAGK 472 >gi|330807651|ref|YP_004352113.1| GTP-binding protein engA [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375759|gb|AEA67109.1| GTP-binding protein engA [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 490 Score = 264 bits (674), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 164/467 (35%), Positives = 251/467 (53%), Gaps = 10/467 (2%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ IA+VG PNVGKSTLFNRL + + A+VG+ G+TRDR YG+A G + +VDT GI Sbjct: 1 MVPVIALVGRPNVGKSTLFNRLTRTRDAIVGDLSGLTRDRQYGEAKWQGRTYILVDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + G + ++M +Q+ LAI EA ++LFL+D+KAG T D I LRK+N +V+NK Sbjct: 61 S-GDEHGMDEKMAEQSLLAIEEADVVLFLVDAKAGFTAADQMIAEHLRKRNKRSYVVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D E L + + I+ H G +++ KI + +P +E E + Sbjct: 120 VDNIDPDMARAEFAPLGMGQAIPIAGAHGRGITQM----LKIALESFPKDDVEEPEEGEE 175 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 + E S K+ ++IA++GRPNVGKSTL+NR+LG +R++ Q G TRD Sbjct: 176 EIVAEGEEAKRIPGPSEKD---GIKIAIIGRPNVGKSTLVNRMLGEDRVIVYDQPGTTRD 232 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ I + + DTAG+RK +I E +E+ +V K++Q+++ I ++DA Sbjct: 233 SIYIPFERNEEKYTLIDTAGVRKRGKIHEEVEKFSVVKTLQAIKDANVVIFVMDAREGVV 292 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 DL ++ G A+V+A+NKWD ++ + + DI+ IS Sbjct: 293 DHDLNLLGFALEAGRALVIAINKWDGMTPSERDFVKIELQRRLFFVDFADIHF--ISALH 350 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G G+ +L SV K TR T+ L L+ ++ PP + NR +L+Y ++P Sbjct: 351 GTGVGNLYASVQNSFKSAVTRWPTNRLTQILEDAVGEHAPPMVNNRRIKLRYAHLGGANP 410 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 P +I K+P+SY RYL N R L G PIR+ F+ +NPY Sbjct: 411 PIIVIHGNQIEKVPKSYVRYLENTYRRVLKLVGTPIRIEFKGGENPY 457 >gi|304406963|ref|ZP_07388617.1| ribosome-associated GTPase EngA [Paenibacillus curdlanolyticus YK9] gi|304343950|gb|EFM09790.1| ribosome-associated GTPase EngA [Paenibacillus curdlanolyticus YK9] Length = 440 Score = 264 bits (674), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 149/454 (32%), Positives = 232/454 (51%), Gaps = 28/454 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKST+FNR++ ++A+V + PG+TRDR+YG NG F+IVDT GI Sbjct: 6 IAIVGRPNVGKSTIFNRVIGDRLAIVEDKPGVTRDRIYGTGEWNGRAFSIVDTGGIEIDG 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I K + Q ELA+ EA +I+F++D+KAG+T D + L + PI++ NK+D Sbjct: 66 EDEIMKSVRMQAELAVEEADVIIFMVDAKAGMTHADDEVAQMLFRSRKPIVVAVNKVDNF 125 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + YE Y L F V IS H G +L +K P Sbjct: 126 NRMDDVYEFYGLGFGTPVAISGSHGTGIGDLLDAAV----EKLP---------------- 165 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 E + E V +R+A++GRPNVGKS+L+N +LG R++ +G TRD++ Sbjct: 166 --EQVDEEYDEDV------IRVALIGRPNVGKSSLVNAILGEERVIVSDVAGTTRDAIDT 217 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + DTAGMRK ++ E+ E+ +V +S++++ + ++L++ +QD Sbjct: 218 PFEKDGQRYVLIDTAGMRKRGKVYETTEKYSVMRSLKAIERADVVLILINGEEGIIEQDK 277 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 I G A + +NKWD V + + + I +S +T + L Sbjct: 278 HIAGYAHEAGKASIFVVNKWDAVERDEKTMSHFTQDVRDHFLFMHYAPIAFLSAKTKQRL 337 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 L+ V +++ RI T LN + NPPPT + R+ Y TQ+ + PP+ + Sbjct: 338 HKLLPIVNHVSEQHALRIQTHVLNDVISDAVAINPPPTDKGKRLRINYATQVATKPPTIV 397 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 IF P + SY+RYL N++R F+ G P+R+ Sbjct: 398 IFVNDPEIMHFSYERYLENKIRAAFNFEGTPVRL 431 >gi|134299023|ref|YP_001112519.1| GTP-binding protein EngA [Desulfotomaculum reducens MI-1] gi|172044273|sp|A4J3P1|DER_DESRM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|134051723|gb|ABO49694.1| small GTP-binding protein [Desulfotomaculum reducens MI-1] Length = 439 Score = 264 bits (674), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 153/461 (33%), Positives = 248/461 (53%), Gaps = 30/461 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNR+V ++A+V + PG+TRDRLY A G F +VDT G+ D Sbjct: 6 VAIVGRPNVGKSTLFNRIVGARIAIVEDMPGVTRDRLYQDAEWQGREFTLVDTGGL-DFA 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I Q+ Q ELAI EA +ILF++D++ G+T D + LR+ + P+I+V+NK++ Sbjct: 65 EDIITAQIRKQAELAIYEADIILFVVDAREGLTAIDEEVGRTLRRADKPVILVANKVE-H 123 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + +Y+ Y L + V +SA L T +L E+++N +E Sbjct: 124 FDKIPYYDFYQLGLGDPVPVSAAEGLNTGDLLD---------------ELVKNLPAQDED 168 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P T +RIAV+GRPNVGKS+L+N +LG R++ + G TRD++ Sbjct: 169 PYPPDT-------------IRIAVIGRPNVGKSSLVNTILGEERVIVSNIPGTTRDAIDS 215 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 S+ + DTAGMR+ +I E+ +V +++++V C+ +++ DAT +QD Sbjct: 216 SFEKNGKNYVLVDTAGMRRRKKIDLPTERYSVVRALRAVDRCDVALMVFDATEGIAEQDK 275 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 RIV G A++L +NKWD++ + K + L + + IS T + + Sbjct: 276 RIVGYAHEKGKAIILIINKWDLIEKDDKTMNRFEKKIREELAFLDYVPTLYISALTKQRV 335 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 ++ +V + + R+ T+ LN+ +++ NPPP +R ++ Y TQ PP+F+ Sbjct: 336 PKVLETVDFVAEEASKRVATADLNNLIREATQHNPPPADKHRRLKIFYATQGGVKPPTFI 395 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 +F P + SY+RYL N++R + G PIR + + Sbjct: 396 LFVNEPEIMHFSYQRYLENKIRDTYGFKGTPIRFFLRKREG 436 >gi|255321133|ref|ZP_05362299.1| ribosome-associated GTPase EngA [Acinetobacter radioresistens SK82] gi|262380178|ref|ZP_06073333.1| ribosome-associated GTPase EngA [Acinetobacter radioresistens SH164] gi|255301687|gb|EET80938.1| ribosome-associated GTPase EngA [Acinetobacter radioresistens SK82] gi|262298372|gb|EEY86286.1| ribosome-associated GTPase EngA [Acinetobacter radioresistens SH164] Length = 469 Score = 264 bits (674), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 150/463 (32%), Positives = 249/463 (53%), Gaps = 29/463 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA++G PNVGKSTLFN++ K + A+V + G+TRDR YG A+ F +VDT GI + + Sbjct: 5 IALIGRPNVGKSTLFNQITKSRDALVADFAGLTRDRKYGDAVYQNKSFIVVDTGGIGESE 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I M +Q++ AI+EA LI+F++D++AG+ D I LR + +V+NK+D Sbjct: 65 Q-GIDSYMAEQSKTAIHEADLIIFVVDARAGLLASDEQIARELRTLGKKVFLVANKVDGV 123 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 A+ E Y L E + ++A H G +++ LE + + +E+ Sbjct: 124 HAEAAVVEFYKLGLGEPMHVAASHGRGVAQM----------------LEEVLADVPEDEN 167 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P+E+ + G LR+A++GRPNVGKSTL+NRLLG R++ + G TRDSV I Sbjct: 168 PEEHDKATG----------LRLAIIGRPNVGKSTLVNRLLGEERVVAYDEPGTTRDSVYI 217 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + DTAG+R+ ++ E +E+ +V K++Q+++ +V+LDA +QDL Sbjct: 218 PFERDGRQYTLIDTAGVRRKGKVDEMIEKFSVVKTLQAMKDAHVVVVVLDAREGVVEQDL 277 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 ++ G A+V+A+NKWD +S+ + + + I I+ IS G G+ Sbjct: 278 HLIGYALEAGRAMVIAINKWDNMSEYDR--KQCKLDVDRRFDFIPWARIHLISALHGTGV 335 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 DL S+ +++ + L L + PP + R +++Y +PP+ + Sbjct: 336 GDLYPSIHRAYDSSHLKVSPAKLTQILNDATEAHQPPMVGGRRIKMRYAHMGGQNPPTIV 395 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 I +K P Y+RYL N R + L G P+++ F++S+NP+ Sbjct: 396 IHGNKVDKTPADYRRYLENVFRKVYKLEGTPVKIDFKTSENPF 438 >gi|312962901|ref|ZP_07777388.1| GTP-binding protein EngA [Pseudomonas fluorescens WH6] gi|311282928|gb|EFQ61522.1| GTP-binding protein EngA [Pseudomonas fluorescens WH6] Length = 489 Score = 264 bits (674), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 163/467 (34%), Positives = 252/467 (53%), Gaps = 11/467 (2%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ IA+VG PNVGKSTLFNRL + + A+VG+ G+TRDR YG+A G + IVDT GI Sbjct: 1 MVPVIALVGRPNVGKSTLFNRLTRTRDAIVGDLSGLTRDRQYGEAKWQGRSYIIVDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + G + ++M +Q+ LAI EA ++LFL+D++AG T D I LRK+N +++NK Sbjct: 61 S-GDEHGMDEKMAEQSLLAIEEADVVLFLVDARAGYTAADQMIGEHLRKRNKRSYLIANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D ++ E + + + I+ H G +++ V + F P E E + Sbjct: 120 IDNIDPEQARAEFSPMGLGDAIPIAGAHGRGITQMLEVALRDF----PKDDAEEEEGEEE 175 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 +E G S I +IA++GRPNVGKSTL+NR+LG +R++ Q G TRD Sbjct: 176 IVAEGEEAKRIPGPSEKDGI----KIAIIGRPNVGKSTLVNRMLGEDRVIVYDQPGTTRD 231 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ I + + + DTAG+RK +I E +E+ +V K++Q+++ I ++DA Sbjct: 232 SIYIPFERNDEKYTLIDTAGVRKRGKIHEEVEKFSVVKTLQAIKDANVVIFVMDAREGVV 291 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 DL ++ G A+V+A+NKWD ++ + + + DI+ IS Sbjct: 292 DHDLNLLGFALEAGRALVIAINKWDGMTPSERDFVKIELQRRLFFVEFADIHF--ISALH 349 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G G+ +L SV K TR T+ L L+ ++ PP + NR +L+Y ++P Sbjct: 350 GTGVGNLYASVQNSFKSAVTRWPTNRLTQILEDAVGEHAPPMVNNRRIKLRYAHLGGANP 409 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 P +I K+P+SY RYL N R L G PIR+ F+ +NPY Sbjct: 410 PIIVIHGNQIEKVPKSYVRYLENTYRRVLKLVGTPIRIEFKGGENPY 456 >gi|149926362|ref|ZP_01914623.1| GTP-binding protein EngA [Limnobacter sp. MED105] gi|149824725|gb|EDM83939.1| GTP-binding protein EngA [Limnobacter sp. MED105] Length = 441 Score = 264 bits (674), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 158/466 (33%), Positives = 243/466 (52%), Gaps = 30/466 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTLFNRL + + A+V N PG+TRDR YG I + +VDT G+ Sbjct: 5 IALVGRPNVGKSTLFNRLTRTRDALVANQPGLTRDRHYGVGRIGPREYLVVDTGGLEPVA 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I +M Q+ AI E+ L+LFL+D + G+TP+DH I + LRK +I+V NK + Sbjct: 65 KDGIYAEMAKQSRQAIVESDLVLFLVDGRQGVTPHDHVIAAELRKAKREVILVVNKTEGY 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + L E ISA H G +L I +K P P Sbjct: 125 THSMAAADFFELGLGEPETISASHGDGVRQL----MDIACEKLPVLP------------- 167 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 E ++ + I ++A+ GRPNVGKST++N LLG R++ G TRDS+ I Sbjct: 168 -------EDEAGGRRI----KVAIAGRPNVGKSTMVNTLLGEERVIAFDLPGTTRDSIYI 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + P + DTAG+RK ++ ES+E+ +V K++Q++ I++LDA QD Sbjct: 217 DFERNDKPYTLIDTAGLRKRGKVFESVEKFSVIKTLQAIEDANVVILMLDAQQDISDQDA 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 I + G ++VLA+NKWD + D + ++ + + L + + +S G+ Sbjct: 277 SIAGFIVEAGRSLVLAVNKWDSLDDYRK--ERIKAEVGRKLTFLNYAKFHYVSATKPFGI 334 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 +M SV E + +++T L +Q+ PP +L+Y Q +PP + Sbjct: 335 AAMMKSVDEAHAAAFAKLSTPKLTRLIQECVEHQQPPRKGIFRPKLRYAHQGGQNPPIVI 394 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 + T + IP++YKRYL R+R F L G P+R+ F+S+ NP+ KK Sbjct: 395 VHGTALDAIPDNYKRYLETRIRERFKLDGTPLRVEFRSNVNPFDKK 440 >gi|238019393|ref|ZP_04599819.1| hypothetical protein VEIDISOL_01257 [Veillonella dispar ATCC 17748] gi|237864092|gb|EEP65382.1| hypothetical protein VEIDISOL_01257 [Veillonella dispar ATCC 17748] Length = 444 Score = 263 bits (673), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 160/467 (34%), Positives = 254/467 (54%), Gaps = 40/467 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTLFN +V K++++V + PG+TRDR+Y A F ++DT GI Sbjct: 6 VAVVGRPNVGKSTLFNAIVNKRISIVEDIPGVTRDRIYFDAEWLNREFTMIDTGGIEFIT 65 Query: 65 NCS--IAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + S I K M Q ELAI EA +ILF++D K GI P D + + LR P+++V NK+D Sbjct: 66 DNSHVIPKMMRLQAELAIEEADVILFVVDGKQGIVPADEEVANILRASGKPVVLVVNKID 125 Query: 123 TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 + + N YE Y+L + + ISA++ + +L K F + N +E Sbjct: 126 SVNQEPNIYEFYNLGLGDPIGISAKNLMNLGDLLDDTVKHFPP---------VGTNVDDE 176 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 ++ + +AV+GRPNVGKS+L N LLG +R++ +G TRDS+ Sbjct: 177 DT-------------------IHVAVIGRPNVGKSSLTNALLGQDRVIVSDVAGTTRDSI 217 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 W + + DTAGMR+ S+I E++E+ ++ +S++SV + +++LDA +Q Sbjct: 218 DTYWTHGDQKFVLIDTAGMRRKSKIEEAVERYSIVRSLRSVDRSDIVVLVLDAQDGVTEQ 277 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMV--SDK--LNLLQDLRTKAIKNLPQIGDI-YINTIS 357 D +I + G V++ +NKWD++ DK L +D+ + Q I + + ++ Sbjct: 278 DKKIAGYAYEAGKGVIIVVNKWDLIEKDDKTTLRFTEDIYDEL--GFLQFAPILFASALT 335 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 + L D++ V E + ++ R++T LN LQ Q NP P+ R ++ Y+TQ Sbjct: 336 KQRIHRLADMLKFVSE--QQYR-RVSTGTLNQLLQDAQTVNPVPSRNGRIPKIYYMTQAS 392 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 PP+F++F P I SY R+L NRLR +F G PIR+ + K Sbjct: 393 VKPPTFILFVNEPELIHFSYMRFLENRLRESFGFEGTPIRLVLRGKK 439 >gi|168182597|ref|ZP_02617261.1| ribosome-associated GTPase EngA [Clostridium botulinum Bf] gi|237795959|ref|YP_002863511.1| GTP-binding protein EngA [Clostridium botulinum Ba4 str. 657] gi|259645868|sp|C3L0M1|DER_CLOB6 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|182674194|gb|EDT86155.1| ribosome-associated GTPase EngA [Clostridium botulinum Bf] gi|229263345|gb|ACQ54378.1| ribosome-associated GTPase EngA [Clostridium botulinum Ba4 str. 657] Length = 439 Score = 263 bits (673), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 149/460 (32%), Positives = 241/460 (52%), Gaps = 28/460 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFN+L K++++V + PG+TRDR+Y +A F ++DT GI Sbjct: 6 VAIVGRPNVGKSTLFNKLAGKRISIVQDTPGVTRDRIYAEAEWLNYKFTMIDTGGIEPES 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I QM Q ++AI A++I+FL+D K G+ P D + LRK P+++V NK+D Sbjct: 66 EDIIVSQMRRQAQIAIEMANVIIFLVDGKEGLAPADKEVAQMLRKSKKPVVLVVNKIDKL 125 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + N YE Y+L + V IS+ LG ++ + + FK Sbjct: 126 KDENNAYEFYNLGIGDPVTISSSQALGLGDMLDRVVEHFKD------------------- 166 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 S + + IA +G+PNVGKS+LIN+LLG RL+ G TRDS+ Sbjct: 167 ---------DESDGEDDERINIAFIGKPNVGKSSLINKLLGEERLIVSDIPGTTRDSIDS 217 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 N + DTAG+R+ S++ E +E+ +V ++ S+ + I+++DAT +QD Sbjct: 218 YVNTDFGEFTLIDTAGLRRKSKVKEEIERYSVIRTYASIERADVCILMIDATEGISEQDQ 277 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 +I+ + A+++ +NKWD+V + + + NL + IS +TG+ + Sbjct: 278 KIIGYAHDINKAILVIVNKWDLVEKDDKTMDKFKKELKVNLSFMPYAKYLFISAKTGQRV 337 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 ++ + E + R+ T LN + + + PP + + ++ Y+TQI + PP+F+ Sbjct: 338 VKVLQTAKECYDNYTKRVKTGVLNDVISQAIMMKEPPIVGTKRLKIYYVTQIGTKPPTFI 397 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 F P I SY+RYL N+LR NF G I++ F+ K Sbjct: 398 FFVNDPACIHFSYQRYLENQLRENFDFQGTGIKLEFRERK 437 >gi|325285620|ref|YP_004261410.1| GTP-binding protein engA [Cellulophaga lytica DSM 7489] gi|324321074|gb|ADY28539.1| GTP-binding protein engA [Cellulophaga lytica DSM 7489] Length = 434 Score = 263 bits (673), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 150/463 (32%), Positives = 246/463 (53%), Gaps = 39/463 (8%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +AIVG PNVGKST FNRL++++ A+V G+TRDR YG++ NGV F+++DT G Sbjct: 1 MSAIVAIVGRPNVGKSTFFNRLIQRREAIVDAVSGVTRDRHYGKSDWNGVEFSLIDTGGY 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 G +++ Q ELAI+EA I+F++D ++G+T D + LR+ + PI +V NK Sbjct: 61 VLGSEDVFEAEIDKQVELAIDEADAIVFMVDVESGVTGMDEDVAKLLRRVDKPIFLVVNK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D + E YSL + I++ + GT +L + K+ +K Sbjct: 121 VDNAKRAEDAVEFYSLGLGDYFTIASINGSGTGDLLDAVVKVLPEK-----------ETE 169 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 N++ P R AVVGRPN GKS+ IN L+G R + +G TRD Sbjct: 170 NDDLP-------------------RFAVVGRPNAGKSSFINALIGEERYIVTDVAGTTRD 210 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ +N + DTAG+R+ +++ E LE +V +S++++ + I++LDAT F+ Sbjct: 211 SIDTKYNRFGFEFNLVDTAGIRRKAKVKEDLEFYSVMRSVRAIEHADVCILMLDATRGFD 270 Query: 301 KQDLRIVDSVF----NTGHAVVLALNKWDMVSDK-LNLLQDLRTKAIKNLPQIGDIYINT 355 Q V+++F +V+ +NKWD+V DK N +++ T+ + + D+ I Sbjct: 271 GQ----VENIFWLAQRNNKGIVILVNKWDLVEDKETNTIKEYTTRIKQAIAPFTDVPIIF 326 Query: 356 ISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQ 415 IS T + + + + +E+ +I T N + NPPP ++ ++K+ TQ Sbjct: 327 ISVLTKQRIFKAIETAVEVYNNRARKIQTRKFNDVMLPIIENNPPPAYKGKFVKIKFCTQ 386 Query: 416 IQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 + + P F FC P + + YKR+L N+LR NF+ G+PI + Sbjct: 387 LPTPYPQFAFFCNLPQYVRDPYKRFLENKLRENFNFEGVPISL 429 >gi|306820449|ref|ZP_07454085.1| ribosome-associated GTPase EngA [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551524|gb|EFM39479.1| ribosome-associated GTPase EngA [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 439 Score = 263 bits (673), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 144/458 (31%), Positives = 241/458 (52%), Gaps = 28/458 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M T+AIVG PNVGKSTLFNRLV +K+++V + PG+TRDR++ F ++DT GI Sbjct: 1 MKKTVAIVGRPNVGKSTLFNRLVGEKISIVEDTPGVTRDRIFADVNWLTYTFTLIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 I M Q ++AI+ + +I+F++D K G+ P D + + LRK P+I+V NK Sbjct: 61 ETDTEEMIPAMMRKQAQVAIDMSDVIMFVLDGKNGLHPQDFEVGTMLRKSKKPVILVVNK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D ++Y+ Y L F ++ +SA LG +L + +F P LE+ E++ Sbjct: 121 VDGSKLPDDYYDFYQLGFDDMYAVSASQGLGIGDLLDEVVGLF----PKDELEIEEDDS- 175 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 +++A+VGRPN GKS+++N ++G R + +G TRD Sbjct: 176 -----------------------IKVAIVGRPNAGKSSILNAIIGEERTIVSPIAGTTRD 212 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 ++ DTAG+RK ++I +++E+ +V +S ++ C+ ++++DAT Sbjct: 213 AIDEKCEIDGKSYTFIDTAGIRKKNKIFDNIEKYSVLRSYTAIERCDVVLMVIDATEMVS 272 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 +QD +I G V++ +NKWD++ N ++D L + I +S T Sbjct: 273 EQDTKIAGLAHEAGKPVIIVINKWDLIDKSTNTMRDYTADVRNALAYMQYAKIEFVSAMT 332 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G+ L++++ + + + K R++T LN + L N PP+ + ++ Y TQ P Sbjct: 333 GKRLNNIITQIDYVLEQSKKRLSTGVLNDVIGDAVLHNQPPSDKGKRLKIYYATQAGVQP 392 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 P+F+IF SYKRYL N++R NF G IR+ Sbjct: 393 PTFVIFINDKELFHFSYKRYLENKIRENFGFDGTVIRI 430 >gi|188586247|ref|YP_001917792.1| small GTP-binding protein [Natranaerobius thermophilus JW/NM-WN-LF] gi|226741142|sp|B2A4M9|DER_NATTJ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|179350934|gb|ACB85204.1| small GTP-binding protein [Natranaerobius thermophilus JW/NM-WN-LF] Length = 440 Score = 263 bits (673), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 151/457 (33%), Positives = 254/457 (55%), Gaps = 30/457 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+A+VG PNVGKS LFNR+V +++++V + PG+TRDR+ G+ +G FN++DT GI D Sbjct: 6 TVALVGRPNVGKSALFNRIVGQRISIVDDTPGVTRDRIDGKGEWSGHSFNLIDTGGIFDE 65 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 ++ I KQ+ Q E+AI+EA +I+F+ D + GITP D + + LRK P+++ NK + Sbjct: 66 ED-DILKQVVIQAEVAIDEADVIVFVTDGRDGITPADEEVAATLRKTKKPVLVAVNKSEG 124 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 Q E Y L F++++ ISA H T +L I ++ P E + ++ + Sbjct: 125 NYDQYAM-EFYQLGFEQVISISALHGTNTGQLLDEIVELL----PEQEYEELNYHEDD-- 177 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 + ++V+GRPNVGKS+LIN++L RL+ + G TRD++ Sbjct: 178 --------------------IMLSVIGRPNVGKSSLINKILNKERLIVSNMPGTTRDAID 217 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 ++ DTAG+RK S+I E LE+ +V +S++ + ++L+D T +QD Sbjct: 218 TVIEREDQKYVFIDTAGLRKKSKIDERLEKYSVIRSIKGMERSNIALLLIDVTKGILEQD 277 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIK-NLPQIGDIYINTISGRTGE 362 +I G +++ LNKWD + +K D + ++ LP + I +S +TG+ Sbjct: 278 KKIAGLAEEKGKGLIILLNKWDAI-EKDGKAGDKYYETVRLELPSVNYAPIMFLSAQTGK 336 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 ++ + + +++K RITT+ +N ++ PPP+ + ++ Y TQ+++ PP+ Sbjct: 337 NVEKIFPVIDKVSKEHSKRITTADVNRVIEDAVNYTPPPSKKGKRLKIYYATQVRTRPPT 396 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 F++F P + SYKRYL N+LR F G PIR+ Sbjct: 397 FVLFVNNPELMKNSYKRYLQNQLRRAFGFEGTPIRIL 433 >gi|226227007|ref|YP_002761113.1| GTP-binding protein EngA [Gemmatimonas aurantiaca T-27] gi|259645877|sp|C1A8T3|DER_GEMAT RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|226090198|dbj|BAH38643.1| GTP-binding protein EngA [Gemmatimonas aurantiaca T-27] Length = 436 Score = 263 bits (673), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 144/458 (31%), Positives = 245/458 (53%), Gaps = 32/458 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKS LFNR++ + A+V + G TRDR +G+A G F +VDT G+ + Sbjct: 6 VAVVGRPNVGKSHLFNRVIGEATAIVSDEAGTTRDRHFGEAEWAGRQFWLVDTGGLVEDS 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + + Q AI EA L+LF++D+K G+ P D I LR P ++V+NK+D Sbjct: 66 HLLMDTAIRRQVMQAIEEADLMLFVVDAKVGVHPSDARIVDILRNSQKPWMLVANKVDDP 125 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 A +FYE + L ++ +SA++ G+ +L + + N EE Sbjct: 126 -ASTDFYEFFRLGVTDVYPVSAQNGKGSGDLLDAV---------------VANIPEVEEE 169 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 ++ + R+AV+GRPNVGKS+ +NRLLG +RL+ +SG TRD++ Sbjct: 170 ERDAV---------------RVAVIGRPNVGKSSFVNRLLGEDRLVVSDESGTTRDAIDA 214 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + + DTAG+R+ SRI + +E + ++ +++ + + I+++DAT + QDL Sbjct: 215 PMRYHDTDLVFVDTAGLRRQSRIDDGVEFYSALRTRRAIDSSDVCILMIDATEGLQNQDL 274 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQD-LRTKAIKNLPQIGDIYINTISGRTGEG 363 +I + G ++L +NKWD+ DK + D + +A++ +P + + S +G+ Sbjct: 275 KIATMAWEAGRGLILVINKWDLYEDKTDKSADKFKKEAVEKVPYLKFVPFLFTSAISGQR 334 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 + ++ VL + + RI+TS +N L + PP R +L Y TQ++ PP+ Sbjct: 335 VTKVLDIVLSVQEQRTRRISTSEVNDALGDLLARLQPPQAAGREVKLNYATQVEIEPPTI 394 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 +F P IPE Y R+L N R + +G P+R+ + Sbjct: 395 AVFGNNPEAIPEHYVRFLHNGFRERWGFTGAPLRIILR 432 >gi|255037605|ref|YP_003088226.1| small GTP-binding protein [Dyadobacter fermentans DSM 18053] gi|254950361|gb|ACT95061.1| small GTP-binding protein [Dyadobacter fermentans DSM 18053] Length = 436 Score = 263 bits (673), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 156/463 (33%), Positives = 240/463 (51%), Gaps = 29/463 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M I+IVG PNVGKSTLFNRL + + A++ N G+TRDR YG F ++DT G Sbjct: 1 MANVISIVGRPNVGKSTLFNRLTESRKAIMDNQSGVTRDRHYGYGEWTDQYFTVIDTGGY 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 G + DQ ELAI E+ ++LF++D+ G+T D + LR+ N P+ +V+NK Sbjct: 61 VVGSEDIFEGAIRDQVELAIEESTVVLFMVDTMTGLTDLDKDFANVLRRFNKPVYLVANK 120 Query: 121 MDTRIAQRNFYEIYSLDF-KEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNK 179 +T ++ E Y L EI ISA+ GT EL + F+ IEN Sbjct: 121 AETTERYQSAGEFYELGLGDEIFAISAQTGFGTGELLDKVVTHFETA-------GIEN-- 171 Query: 180 RNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITR 239 P+E I RIA++GRPNVGKS+ +N L G +R + +G TR Sbjct: 172 -----PEEGIP--------------RIAIMGRPNVGKSSFLNVLTGTDRSIVTDIAGTTR 212 Query: 240 DSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPF 299 D++ +N + DTAG+R+ SR+ E +E + +S++++ + IVLLDAT+ Sbjct: 213 DAIHTHYNAFGMNFILTDTAGIRRKSRVKEDIEFYSTLRSVKAMEESDVCIVLLDATLGL 272 Query: 300 EKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGR 359 E QD+ I+ +V+ +NKWD+V + ++ L + + I S Sbjct: 273 EGQDMNIIGQADKAKKGIVIMVNKWDLVEKDSKTADQYKKALLEKLAPMNYMPIIFASVV 332 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 + + +M +E+ + +I+TS LN +Q + PPP +Y +KY+ Q+ + Sbjct: 333 EKQRIHQVMEKAMEVYQNKTKKISTSKLNEVMQAEIEKYPPPAHRGKYINIKYMIQLPTP 392 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 P+F+ F + P + E Y RYL NRLR NF SG+PI + F+ Sbjct: 393 SPTFVFFSSHPKHVKEPYLRYLENRLRENFDFSGVPITIFFRE 435 >gi|291279462|ref|YP_003496297.1| small GTP-binding protein [Deferribacter desulfuricans SSM1] gi|290754164|dbj|BAI80541.1| small GTP-binding protein [Deferribacter desulfuricans SSM1] Length = 438 Score = 263 bits (673), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 151/461 (32%), Positives = 247/461 (53%), Gaps = 30/461 (6%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 ++T+ I+G PNVGKSTLFNRL K++A+V + PG+TRDRL A G F IVDT G Sbjct: 1 MFTVGIIGRPNVGKSTLFNRLAGKRIAIVDDMPGVTRDRLEYIAEWEGKKFKIVDTCGY- 59 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 D + + K+M Q +++EA + L+D+K G+ P D + + LR++ I+V+NK+ Sbjct: 60 DLREELLKKEMIKQFYASLDEADFFVLLVDAKEGLHPLDEMVCNILREREKKFIVVANKV 119 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D Q + Y L +EI+ ISA H L ++IEN + Sbjct: 120 DNEKLQSFVADFYQLGVEEIIPISATHGKNVDILLD---------------KIIENYVED 164 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 EE V + +++ VVGRPNVGKS+LIN LG RL+ G TRDS Sbjct: 165 EE-------------VTDFIDSIKVVVVGRPNVGKSSLINSWLGDERLIVTPIPGTTRDS 211 Query: 242 VSISWNWKNHPIEIFDTAGMRKPS-RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 V + + + + DTAG+RK S + +E+ +S ++R + + L+DAT Sbjct: 212 VDTYFEYNSKKYTLIDTAGIRKKSVMFKDKIEKYGFYRSYDAIRRADIAVGLIDATEGVT 271 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 ++D++++ + G VVLA+NKWD ++ + + + + + + + + IS T Sbjct: 272 ERDVKVIADAYEAGRPVVLAINKWDAINKDEKVGKKFKEEIAEKFKFLNNPPVIFISALT 331 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 + + + +V + + RI TS LN L+ Q+ + PP + NR + Y+TQ+ P Sbjct: 332 RKNIFKIFDAVDNLYAEYSKRIQTSKLNKLLEHVQMLHQPPVVKNRRVKFYYMTQVDIKP 391 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 P F+IF +P+ + SYKR+++N+LR NF G+P+ + ++ Sbjct: 392 PHFVIFVNYPDSVHFSYKRFIVNQLRENFGFKGVPLIVSYR 432 >gi|116494866|ref|YP_806600.1| GTP-binding protein EngA [Lactobacillus casei ATCC 334] gi|122263716|sp|Q039G4|DER_LACC3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|116105016|gb|ABJ70158.1| Predicted GTPase [Lactobacillus casei ATCC 334] Length = 435 Score = 263 bits (673), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 141/461 (30%), Positives = 249/461 (54%), Gaps = 30/461 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AIVG PNVGKST+FNR++ +++++V + PG+TRDR+YG++ G F ++DT GI G Sbjct: 5 TLAIVGRPNVGKSTIFNRILGERVSIVEDTPGVTRDRIYGKSEWLGKEFAVIDTGGIDLG 64 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 +A Q+ DQ E+AI+EA +ILFL D ++G+T D + L + P+++ NK+D Sbjct: 65 DEPFLA-QIKDQAEIAIDEADVILFLADIESGVTDADERVAQILYRAKKPVVLAVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 +++ Y+ YSL F E +S H +G ++ + F Sbjct: 124 PERRQDIYDFYSLGFGEPYPLSGTHGIGLGDVLDAVLAAF-------------------- 163 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 P E+ + E S ++ +++GRPNVGKS+L+N +LG NR++ G TRD++ Sbjct: 164 -PSEDKSVEDDS--------IKFSLIGRPNVGKSSLVNAILGENRVIVSPIEGTTRDAID 214 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + + + DTAG+RK ++ E+ E+ V ++++++ + + +++A +QD Sbjct: 215 TKFEAVDETFTMIDTAGIRKRGKVYENTEKYAVMRALRAIDRSDVVLFVINAEEGIREQD 274 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 ++ G +++ +NKWD V + ++D + + I +S +T + Sbjct: 275 KKVAGYAHEAGRGIIIVVNKWDTVEKDNHTMKDFENLIRQEFQYLDYAPIIFVSAKTKQR 334 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 L L ++ +++ RI +S LN L P PT+ + R+ Y+TQ+ PP+F Sbjct: 335 LQSLPAMIVAVSENQTRRIQSSVLNDVLMDAITVTPTPTVNGKRLRIYYMTQVAVKPPTF 394 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 ++F P+ + SY+R+LIN+LR F SG PI + + K Sbjct: 395 VVFVNDPDLLHFSYERFLINQLRQAFDFSGTPIHIIARKRK 435 >gi|290968707|ref|ZP_06560245.1| ribosome-associated GTPase EngA [Megasphaera genomosp. type_1 str. 28L] gi|290781360|gb|EFD93950.1| ribosome-associated GTPase EngA [Megasphaera genomosp. type_1 str. 28L] Length = 443 Score = 263 bits (673), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 151/463 (32%), Positives = 245/463 (52%), Gaps = 31/463 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI--AD 62 +A+VG PNVGKSTLFN +VKK++A+V + PG+TRDR+Y A G F ++DT GI D Sbjct: 6 VAVVGRPNVGKSTLFNAIVKKRIAIVEDIPGVTRDRIYFDAEWLGREFTMIDTGGIEFVD 65 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + I M Q ELAI EA +ILF++D K G+ P D + + LR P+++V NK+D Sbjct: 66 AAD-RIFTDMRYQAELAIREADVILFVVDGKTGMQPQDEEVANILRTCGKPVLLVVNKID 124 Query: 123 TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 + + N YE Y+L + + +SA + + +L L+ + + ++ Sbjct: 125 SVEQEMNMYEFYALGMGDPIGVSAVNLMNLGDL----------------LDSVLQHIQHL 168 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 +P+E + IA+VGRPNVGKS++ N LLG R++ + G TRDS+ Sbjct: 169 PTPEER------------EDTIHIALVGRPNVGKSSMTNALLGQERVIVSNVPGTTRDSI 216 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 W + + + DTAGMR+ +++ +E+ +V +++++V + +++LDA +Q Sbjct: 217 DTYWTYNDTSFVLIDTAGMRRKAKVDIPVERYSVVRALRAVDRSDVAVLVLDAQDGVTEQ 276 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D +I + G ++ +NKWD++ Q + L + I S T + Sbjct: 277 DKKIAGYIHEAGKGCIIVVNKWDLIDKDSKTSQAFEEDIRRELAFLQYAPILFASALTKQ 336 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 ++ L V + + R++TS LN L+ QL NPPP + R+ Y+TQ PP+ Sbjct: 337 RVNRLADMVKFVAEQQHMRVSTSVLNELLEDAQLTNPPPAKGGKLLRIYYMTQASVQPPT 396 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 F++F P + SY R+L NRLR F G PIR+ + + Sbjct: 397 FILFVNEPRLMHFSYVRFLENRLRETFGFEGTPIRLILRGKRE 439 >gi|148546131|ref|YP_001266233.1| GTP-binding protein EngA [Pseudomonas putida F1] gi|166225843|sp|A5VYT9|DER_PSEP1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|148510189|gb|ABQ77049.1| small GTP-binding protein [Pseudomonas putida F1] Length = 487 Score = 263 bits (673), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 161/475 (33%), Positives = 248/475 (52%), Gaps = 23/475 (4%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ IA+VG PNVGKST+FNRL K + A+VG+ G+TRDR YG A G F ++DT GI Sbjct: 1 MVPVIALVGRPNVGKSTMFNRLTKTRDAIVGDLSGLTRDRQYGDASWQGRSFILIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 G + ++M +Q+ +AI EA +LFL+D++AG+T D I LRK+N I+V+NK Sbjct: 61 T-GDEVGMDEKMAEQSLMAIEEADYVLFLVDARAGMTAADQMIAEHLRKRNKAAILVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D E + + ++ G S L + + + LE Sbjct: 120 IDNIDPDVARAEFSPMGMGNAIPVAGSQGRGISALMEAVLGHLPRDAEDEALE------- 172 Query: 181 NEESPKENITSEGKSSVKNISKP-----LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQS 235 +EG+ +V+ I P ++IA++GRPNVGKSTL+NR+LG R++ + Sbjct: 173 -------QDVAEGEEAVR-IPGPSEKDGIKIAIIGRPNVGKSTLVNRMLGEERVVVYDEP 224 Query: 236 GITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDA 295 G TRDS+ I + DTAG+RK +I E +E+ +V K++Q+++ I ++DA Sbjct: 225 GTTRDSIYIPFERDGDKYTFIDTAGVRKRGKIHEEVEKFSVVKTLQAIKDANVVIFVMDA 284 Query: 296 TIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINT 355 DL ++ G A+V+ALNKWD + ++T+ + L + I+ Sbjct: 285 REGVVDHDLNLLGFALEAGRAIVIALNKWDGMEPGERAY--VKTELERRLFFVDFADIHF 342 Query: 356 ISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQ 415 IS G G+ +L SV + TR TS L L+ ++ PP + R +L+Y Sbjct: 343 ISALHGTGVGNLYKSVQAAFQSAVTRWPTSRLTQILEDAVSEHQPPMVNGRRIKLRYAHL 402 Query: 416 IQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 ++PP +I + IP+SY RYL N R L G PIR+ ++ +NPY K Sbjct: 403 GGANPPLIVIHGNQTDSIPKSYSRYLENTYRRVLKLVGTPIRIEYKGGENPYEGK 457 >gi|28210831|ref|NP_781775.1| GTP-binding protein EngA [Clostridium tetani E88] gi|37999662|sp|Q895X8|DER_CLOTE RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|28203269|gb|AAO35712.1| GTP-binding protein [Clostridium tetani E88] Length = 438 Score = 263 bits (673), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 154/462 (33%), Positives = 244/462 (52%), Gaps = 32/462 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFN+L K++A+V + PG+TRDR+Y QA F I+DT GI Sbjct: 6 VAIVGRPNVGKSTLFNKLAGKRIAIVEDTPGVTRDRIYAQAEWLNHNFTIIDTGGIEPES 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I QM Q E+AI A +I+F++D K G+TP D+ + LRK PI++V NK+D Sbjct: 66 EDIIVAQMRRQAEMAIEMADVIMFIVDGKEGLTPADNEVALMLRKSKKPIVLVVNKIDRI 125 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + N YE Y+L E ISA LG ++ I + F + Y ++EE Sbjct: 126 EEEDNMYEFYNLGIGEPTTISASQALGLGDMLDKIVENFPKGY------------QDEEE 173 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 + +RIA VG+PNVGKS+LIN++LG R + + G TRD++ Sbjct: 174 ----------------DEYIRIAFVGKPNVGKSSLINKILGEERNIVSNIPGTTRDAIDS 217 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + DTAG+R+ S++ + +E+ + ++ ++ + I+L+DA +QD Sbjct: 218 FLERDEDKFILIDTAGLRRRSKVKDQIERYSTVRTYAAIDRADVCILLIDAEEGISEQDK 277 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 +I+ A+++ +NKWD++ + N + + + L + IS +TG+ + Sbjct: 278 KIIGYAHELNKALMVVVNKWDLIEKETNTMNRFKKELQSELSFMSYAPYIFISAKTGQRV 337 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLK--YITQIQSSPPS 422 ++ E + RI+T LN + K + PP + NRLK Y+TQ+ + P+ Sbjct: 338 GKVLDLAKECYTNYSKRISTGVLNDVISKAVMMKEPPIV--AMNRLKIYYVTQVATKAPT 395 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 F+ F P + SY+RYL N+LR +F +G I+M F+ K Sbjct: 396 FVFFVNDPRTLHFSYERYLENQLRQSFDFTGTGIKMEFRERK 437 >gi|299530502|ref|ZP_07043922.1| GTP-binding protein EngA [Comamonas testosteroni S44] gi|298721478|gb|EFI62415.1| GTP-binding protein EngA [Comamonas testosteroni S44] Length = 446 Score = 263 bits (672), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 155/471 (32%), Positives = 248/471 (52%), Gaps = 35/471 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTLFNRL K + A+V + G+TRDR YGQ + ++DT G Sbjct: 5 IALVGRPNVGKSTLFNRLTKSRDAIVADFAGLTRDRHYGQGRQGKHEYIVIDTGGFEPDA 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + I K+M QT+ A+ EA +++F++D++AG++ DH I ++LR+ P I+V+NK + Sbjct: 65 SRGIFKEMAKQTQQAVAEADVVIFVLDARAGLSGQDHEIGNYLRRLGKPTILVANKAEGM 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 E Y L E+V +SA H G L + N P E ++ Sbjct: 125 KDGVQLSEFYELGLGEVVPVSAAHGQGVRSLVDAALGLL-----NLPEPEEEVFGEEDQ- 178 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 KP+R+AV GRPN GKSTLIN LG RL+ G TRD++++ Sbjct: 179 -----------------KPVRLAVAGRPNAGKSTLINTWLGEERLVAFDMPGTTRDAITV 221 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + E+ DTAG+R+ ++ E++E+ +V K++Q++ ++L+DAT QD Sbjct: 222 PFERNGQKFELIDTAGLRRKGKVFEAIEKFSVVKTLQAIEGANVVLLLIDATQGVTDQDA 281 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSD-KLNLLQ---DLRTKAIKNLPQIGDIYINTISGRT 360 I + +G +VVL +NKWD V D + +L+ + R +K P ++ IS + Sbjct: 282 HIAGYILESGRSVVLGINKWDAVDDYQRQMLERSIETRLSFLKFAP------LHFISAQK 335 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKT-QLQNPPPTIFNRYNRLKYITQIQSS 419 +GL+ L S+++ ++ ++ T L L ++ Q Q P R +++Y Q + Sbjct: 336 RQGLEPLWKSIIQAHRAATCKMPTPVLTRILMESIQFQTPKKVGAYR-PKMRYAHQGGMN 394 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 PP +I + ++YKR+L R R F+L G P+R+ ++S NPY K Sbjct: 395 PPIIVIHGNSLELVTDAYKRFLEGRFRKEFNLVGTPLRIDLKTSHNPYADK 445 >gi|114319757|ref|YP_741440.1| GTP-binding protein EngA [Alkalilimnicola ehrlichii MLHE-1] gi|122312352|sp|Q0AB37|DER_ALHEH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|114226151|gb|ABI55950.1| small GTP-binding protein [Alkalilimnicola ehrlichii MLHE-1] Length = 467 Score = 263 bits (672), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 156/467 (33%), Positives = 244/467 (52%), Gaps = 24/467 (5%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M IA+VG PNVGKSTLFN+L + + A+V +HPG+TRDR YG + + +VDT G+ Sbjct: 1 MDPVIALVGRPNVGKSTLFNQLTRSRDALVADHPGLTRDRQYGVGKVGERPYIVVDTGGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 D + + M+ Q AI EA ILFL+D ++G T D + + LR++ P+ +V NK Sbjct: 61 GDDPE-GVEQGMHQQALAAIEEADAILFLVDGRSGPTAADEELAAHLRRQGKPVWLVVNK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 D + E ++L E + I+A H G + L +H L + Sbjct: 120 TDGVDHRLATAEFHALGLGEPLPIAAAHGRGIAGLM------------DHVLAGL----- 162 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 P+ ++ V+ RIA+VGRPNVGKSTL+NRLLG R+L G TRD Sbjct: 163 ----PEGFTSAHAALQVEEAEGATRIAIVGRPNVGKSTLVNRLLGEERVLVYDMPGTTRD 218 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 SV I P + DTAGMR+ +R+ E++E+ +V ++++++ I+++DA Sbjct: 219 SVFIPLERDGRPYTLIDTAGMRRRARVHETVEKFSVIQTLKAMEAAHVVILVIDAREGVT 278 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 QD ++ V +G A+VLA+NKWD ++ + + ++ + L + + IS Sbjct: 279 DQDTHLIGHVLESGRALVLAINKWDGLTAEQR--EAVKAGLERKLTFLNFARRHFISALH 336 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G G+ L +V + + + + T LN L + PP + R +L+Y Q +P Sbjct: 337 GSGVGLLFGAVDKALEAARRDLPTPILNEILADAVAAHAPPLVQGRRIKLRYAHQGGKNP 396 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 P +I K+P +YKRYL + R L G P+R+ F+S +NPY Sbjct: 397 PVIVIHGNQVKKLPGAYKRYLEHVFRDELDLYGTPVRLEFRSGENPY 443 >gi|312890129|ref|ZP_07749672.1| ribosome-associated GTPase EngA [Mucilaginibacter paludis DSM 18603] gi|311297406|gb|EFQ74532.1| ribosome-associated GTPase EngA [Mucilaginibacter paludis DSM 18603] Length = 433 Score = 263 bits (672), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 155/463 (33%), Positives = 238/463 (51%), Gaps = 42/463 (9%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNRL++ + A+V + G+TRDR YG + G F ++DT G Sbjct: 5 VAIVGRPNVGKSTLFNRLIEARKAIVDDFSGVTRDRHYGVSEWTGHDFTVIDTGGYVANS 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + +Q +AI EA +ILF++D GIT D I +FLRK P+ +VSNK+D Sbjct: 65 DDVFEAAIREQVIIAIEEASVILFMVDVTTGITDLDDEIATFLRKSKKPVFVVSNKVDNN 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 Q Y +I ISA GT EL + K F+ + PLE Sbjct: 125 SQQVESATFYGFGLGDIYNISAMTGSGTGELLDEVVKTFE----DVPLE-------QNTL 173 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 PK I GRPNVGKS++IN LLG++R + +G TRDS+ I Sbjct: 174 PKYTIA-------------------GRPNVGKSSIINTLLGHDRNIVTPIAGTTRDSIHI 214 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 +N H + DTAGMRK +++ E++E +V ++++++ + I+++DA E QD+ Sbjct: 215 HYNQFGHDFMLIDTAGMRKKTKVKENIEFYSVMRTIKAIEESDVVILMIDAVEGIEAQDV 274 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDK---LNLLQDLRTKAIKNLPQIGDIYINTISGRTG 361 I +V+ +NKWD++ + +DL + I + ++ + + + Sbjct: 275 NIFHLAEKNKKGIVIVVNKWDLIEKNNKTTKVFEDLIHQKIAPFTDVPIVFTSVLEKQR- 333 Query: 362 EGLDDLMVSVLEINKLWKTR---ITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 + ++ NK+++ R I TS LN + PPP I +Y ++KY+TQI Sbjct: 334 -----IFKAIEAANKVYENRNKKIPTSKLNDVMLPIIESFPPPAIKGKYVKIKYVTQISG 388 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 P F FC P I E Y R++ N+LR NF G+PI++ F+ Sbjct: 389 IAPMFAFFCNLPQYIKEPYMRFIENKLRENFDFQGVPIQIFFR 431 >gi|308270408|emb|CBX27020.1| GTP-binding protein engA [uncultured Desulfobacterium sp.] Length = 442 Score = 263 bits (672), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 152/472 (32%), Positives = 244/472 (51%), Gaps = 41/472 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 I IVG PNVGKST FNR+ + K A+V + PG+TRD ++ A+ N V F +VDT G A G Sbjct: 5 ITIVGRPNVGKSTFFNRVTRSKDAIVDDFPGVTRDCIHRDAVWNDVEFTLVDTGGFAYGD 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I ++ Q + +I++A I+ ++D K+G++P+D I LR + P+ V NK+D Sbjct: 65 EDDINSKVRMQVKQSIDDADAIIMMLDGKSGVSPFDSDIVQLLRSVSKPVFYVVNKIDGD 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + N YE YSL + I +S+EH G + IF + ++I Sbjct: 125 EKEINLYEFYSLGIERIYSLSSEHGYGVGSFLDDLVSIFPKADSGQYQDII--------- 175 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 ++AV+GRPNVGKS+LINR+LG +R + G TRD+V Sbjct: 176 --------------------KVAVIGRPNVGKSSLINRILGKDRHIVSDVPGTTRDAVDS 215 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 K I DTAG+R+ S++++ +E+ ++ K+++S+ C+ ++++DA+ QD+ Sbjct: 216 LCEIKGKQYLIIDTAGIRRKSKVSKKIEKFSIIKALKSLDRCDIALIIIDASEGITDQDI 275 Query: 305 RIVDSVFNTGHAVVLALNKWDMV--SDKL--NLLQDLRTKA--IKNLPQIGDIYINTISG 358 I + + LNKWD V DK+ ++ L+ +A + P + TIS Sbjct: 276 SIAGYAYERECGCIFLLNKWDTVEKGDKIKKKFIEQLKYEAKYLNYAPAM------TISA 329 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 +TG G+ + V E+ K ++ RI T LN L+ + P R + Y TQ+ Sbjct: 330 KTGLGVAKIFDLVDEVYKQYEFRIGTGELNRILESAVTKTEPSLYKGRRIKFYYTTQVSI 389 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 PP+F+ F + + + SYKRYL+N++R L PI++ F+ KK Sbjct: 390 KPPTFVFFVNYADALHFSYKRYLVNQIRAGAGLDKTPIKLVFKKRDGDRHKK 441 Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 51/177 (28%), Positives = 95/177 (53%), Gaps = 15/177 (8%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 I +A++G PNVGKS+L NR++ K +V + PG TRD + I G + I+DTAGI Sbjct: 174 IIKVAVIGRPNVGKSSLINRILGKDRHIVSDVPGTTRDAVDSLCEIKGKQYLIIDTAGIR 233 Query: 62 DGKNCSIAKQMNDQTEL----AINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIV 117 + ++K++ + + +++ + L +ID+ GIT D +I + ++ I + Sbjct: 234 --RKSKVSKKIEKFSIIKALKSLDRCDIALIIIDASEGITDQDISIAGYAYERECGCIFL 291 Query: 118 SNKMDT---------RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQ 165 NK DT + ++ YE L++ + ISA+ LG +++ ++ +++KQ Sbjct: 292 LNKWDTVEKGDKIKKKFIEQLKYEAKYLNYAPAMTISAKTGLGVAKIFDLVDEVYKQ 348 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 38/134 (28%), Positives = 59/134 (44%), Gaps = 3/134 (2%) Query: 202 KPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGM 261 KP+ I +VGRPNVGKST NR+ + G+TRD + W + + DT G Sbjct: 2 KPI-ITIVGRPNVGKSTFFNRVTRSKDAIVDDFPGVTRDCIHRDAVWNDVEFTLVDTGGF 60 Query: 262 RKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLAL 321 + + K + QS+ + I++LD D IV + + V + Sbjct: 61 AYGDE--DDINSKVRMQVKQSIDDADAIIMMLDGKSGVSPFDSDIVQLLRSVSKPVFYVV 118 Query: 322 NKWDMVSDKLNLLQ 335 NK D ++NL + Sbjct: 119 NKIDGDEKEINLYE 132 >gi|237745515|ref|ZP_04575995.1| GTP-binding protein engA [Oxalobacter formigenes HOxBLS] gi|229376866|gb|EEO26957.1| GTP-binding protein engA [Oxalobacter formigenes HOxBLS] Length = 445 Score = 263 bits (672), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 156/471 (33%), Positives = 253/471 (53%), Gaps = 28/471 (5%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M IA+VG PNVGKSTLFNRL + + A+V ++PG+TRDR YG+ + F ++DT G Sbjct: 1 MKPVIALVGRPNVGKSTLFNRLTRSRAALVADYPGLTRDRHYGEGRMGDRPFLVIDTGGF 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + ++M QT+ A+ E+ +++F++D + GITP+D AIT +LRK P+I+V NK Sbjct: 61 EPVVKEGVLQEMAKQTKQAVAESDVVVFMVDGRQGITPHDKAITDYLRKCGRPVILVVNK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + + Y L + + IS+ H G +H+++ + K P P E Sbjct: 121 AEGMKYTAVVADFYELGLGDPLVISSAHGDG---VHTLLEEALG-KVPYAPAET------ 170 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 ++ I E +P+R+AVVGRPNVGKST+IN LLG R++ G TRD Sbjct: 171 -----EDGIAGE--------QRPVRLAVVGRPNVGKSTMINALLGEERVIAFDLPGTTRD 217 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 ++ I + + DTAG+RK ++ +++E+ +V K++Q++ ++LLDA Sbjct: 218 AIEIPFERDGKHYTLVDTAGLRKRGKVFQAIEKFSVVKTLQAISEANVVLLLLDAQQDIS 277 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWD-MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGR 359 +QD I V +G A+V+ +NKWD + DK ++++ + + L + + +S Sbjct: 278 EQDAHIAGFVLESGRALVVGINKWDGLPPDK---RREVKAEVERKLHFLSFAKFHYVSAL 334 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKT-QLQNPPPTIFNRYNRLKYITQIQS 418 G+ LM SV +++T L L++ + Q PP + +L+Y Q Sbjct: 335 KATGIGALMRSVDAAYAAAMAKLSTPRLTRVLEEAVEHQAPPRRQGSIRPKLRYAHQGGQ 394 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIK 469 +PP +I + + YKRYL R FSL+G P+R+ F+S KNP+ K Sbjct: 395 NPPIIVIHGNSLENVGDDYKRYLEKHFRDAFSLTGTPLRIEFRSGKNPFAK 445 >gi|77460818|ref|YP_350325.1| GTP-binding protein EngA [Pseudomonas fluorescens Pf0-1] gi|123603396|sp|Q3K7C0|DER_PSEPF RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|77384821|gb|ABA76334.1| GTP-binding protein [Pseudomonas fluorescens Pf0-1] Length = 490 Score = 263 bits (672), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 164/475 (34%), Positives = 250/475 (52%), Gaps = 26/475 (5%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ IA+VG PNVGKSTLFNRL + + A+VG+ G+TRDR YG+A G + ++DT GI Sbjct: 1 MVPVIALVGRPNVGKSTLFNRLTRTRDAIVGDLSGLTRDRQYGEAKWQGRSYILIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + G + ++M +Q+ LAI EA ++LFL+D+KAG T D I LRK+N +V+NK Sbjct: 61 S-GDEHGMDEKMAEQSLLAIEEADVVLFLVDAKAGFTAADQMIAEHLRKRNKRSHVVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D + E L + I+ H G ++L F R Sbjct: 120 VDNIDPEMARAEFAPLGMGHAIPIAGAHGRGITQLLEAALSDFP---------------R 164 Query: 181 NEESPKENITSEGKSSV---KNISKP-----LRIAVVGRPNVGKSTLINRLLGYNRLLTG 232 +++ P E E + K I P ++IA++GRPNVGKSTL+NR+LG +R++ Sbjct: 165 DDDEPAEGEEEEVVAEGEEAKRIPGPSEKDGIKIAIIGRPNVGKSTLVNRMLGEDRVIVY 224 Query: 233 SQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVL 292 Q G TRDS+ I + + + DTAG+RK +I E +E+ +V K++Q+++ I + Sbjct: 225 DQPGTTRDSIYIPFERNDEKYTLIDTAGVRKRGKIHEEVEKFSVVKTLQAIKDANVVIFV 284 Query: 293 LDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIY 352 +DA DL ++ G A+V+A+NKWD ++ + + DI+ Sbjct: 285 MDAREGVVDHDLNLLGFALEAGRALVIAINKWDGMTPSERDFVKVELQRRLFFVDFADIH 344 Query: 353 INTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKY 412 IS G G+ +L SV K TR TS L L+ ++ PP + +R +L+Y Sbjct: 345 F--ISALHGTGVGNLYASVQNSFKSAVTRWPTSRLTQILEDAVSEHQPPMVNSRRIKLRY 402 Query: 413 ITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 ++PP +I K+P+SY RYL N R L G PIR+ F+ +NPY Sbjct: 403 AHLGGANPPIIVIHGNQIEKVPKSYVRYLENTYRRVLKLVGTPIRIEFKGGENPY 457 >gi|296387686|ref|ZP_06877161.1| GTP-binding protein EngA [Pseudomonas aeruginosa PAb1] Length = 493 Score = 263 bits (672), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 168/471 (35%), Positives = 256/471 (54%), Gaps = 10/471 (2%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ IA+VG PNVGKSTLFNRL K + A+V + G+TRDR YG+A G + ++DT GI Sbjct: 1 MVPVIALVGRPNVGKSTLFNRLTKSRDAIVAEYAGLTRDRQYGEARWQGRTYIVIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + G I +M +Q+ AI EA +LFL+DS+AG+T D I LRK+N +V+NK Sbjct: 61 S-GDEEGIDAKMAEQSLQAIEEADAVLFLVDSRAGMTAADQMIAEHLRKRNKRSFLVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +DT E L + + I+A H G + + IF + N E Sbjct: 120 VDTIDPDLARAEFSPLGLGDALPIAAAHGRGINHMLQEALGIFPKD--NAEEEGEGEPAS 177 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 E + E T S K+ ++IA++GRPNVGKSTL+NR+LG R++ Q+G TRD Sbjct: 178 EEVAEGEEPTRIPGPSEKD---GIKIAIIGRPNVGKSTLVNRMLGEERVIVYDQAGTTRD 234 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ I + + DTAG+R+ +I E++E+ +V K++Q+++ I ++DA Sbjct: 235 SIYIPFERNEEKYTLIDTAGVRRRGKIFEAVEKFSVVKTLQAIQDANVVIFVMDAREGVV 294 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWD-MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGR 359 + DL ++ V TG A+V+ALNKWD M + + + ++T+ + L + I+ IS Sbjct: 295 EHDLNLLGFVLETGRALVIALNKWDGMEAAERDY---VKTELERRLLFVDFADIHFISAL 351 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 G G+ L SV E + TR TS L S L+ + PP + R +L+Y ++ Sbjct: 352 HGTGVGHLYKSVQESFRSAVTRWPTSRLTSILEDAVQVHQPPMVNGRRIKLRYAHLGGAN 411 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 PP +I + +P++Y RYL R L G PIR+ ++ +NPY K Sbjct: 412 PPLIVIHGNQVDAVPKAYTRYLEKTYRRVLKLVGTPIRIEYKGGENPYEGK 462 >gi|29654548|ref|NP_820240.1| GTP-binding protein EngA [Coxiella burnetii RSA 493] gi|153208833|ref|ZP_01947057.1| GTP-binding protein EngA [Coxiella burnetii 'MSU Goat Q177'] gi|154706295|ref|YP_001424682.1| GTP-binding protein EngA [Coxiella burnetii Dugway 5J108-111] gi|161830868|ref|YP_001597096.1| GTP-binding protein EngA [Coxiella burnetii RSA 331] gi|165921454|ref|ZP_02219642.1| GTP-binding protein EngA [Coxiella burnetii RSA 334] gi|212218660|ref|YP_002305447.1| GTP-binding protein EngA [Coxiella burnetii CbuK_Q154] gi|41017032|sp|Q83C83|DER_COXBU RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|189037144|sp|A9KFU3|DER_COXBN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|189037145|sp|A9NDV6|DER_COXBR RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|238058971|sp|B6J7Q3|DER_COXB1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|29541815|gb|AAO90754.1| GTP-binding protein [Coxiella burnetii RSA 493] gi|120575684|gb|EAX32308.1| GTP-binding protein EngA [Coxiella burnetii 'MSU Goat Q177'] gi|154355581|gb|ABS77043.1| GTP-binding protein [Coxiella burnetii Dugway 5J108-111] gi|161762735|gb|ABX78377.1| GTP-binding protein EngA [Coxiella burnetii RSA 331] gi|165916769|gb|EDR35373.1| GTP-binding protein EngA [Coxiella burnetii RSA 334] gi|212012922|gb|ACJ20302.1| GTP-binding protein [Coxiella burnetii CbuK_Q154] Length = 443 Score = 263 bits (672), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 159/467 (34%), Positives = 245/467 (52%), Gaps = 30/467 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ IAIVG PNVGKSTLFN L K + A+V + PG+TRDR YG+ I+ +VDT G+ Sbjct: 1 MLPVIAIVGRPNVGKSTLFNYLTKSRAALVADVPGVTRDRQYGETTIDSQRLLLVDTGGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 D +N +A Q E AI+E+ ILFL+D+KAG+ P D I LRKK I + NK Sbjct: 61 VDTENKEVAPLAETQVEQAIDESDCILFLVDAKAGLVPADEIIAERLRKKGKKIFLAVNK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 D A + Y L F E I+A G +L + + Sbjct: 121 ADRARAAVVQSDFYKLGFGEPYVIAAASGRGVKDLMTQVL-------------------- 160 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 E P+E E + +K IA++GRPNVGKSTLINRLLG R++ Q G TRD Sbjct: 161 -ENLPEEKEVIEKEVGIK-------IAMIGRPNVGKSTLINRLLGEERVIVYDQPGTTRD 212 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ I + + + DTAG+R+ ++I + +E+ ++ KS+Q++ + I LLDA Sbjct: 213 SIYIPFARNDENYTLIDTAGIRRRAKIQDYVEKFSMIKSLQAMHAADVVIFLLDARQGVT 272 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 +QDLR+++ + G ++++A+NKWD ++ + ++R + +P + IS Sbjct: 273 EQDLRLLNRIVEAGVSLIIAVNKWDGLN--IEERDNVRNAIDRRMPFVDFARRYFISALH 330 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G G+ L ++ E + + +TT L L+K ++ PP + R RL+Y P Sbjct: 331 GTGVGKLFRAIQESYQSIQQELTTGQLTRALEKAVAEHEPPLVKGRRIRLRYAHLGARHP 390 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 + ++ +P+SY RYL N R F+ G+P+ + ++ NPY Sbjct: 391 LTIVVHGKQTKSLPQSYSRYLANYFRKTFNFIGVPVHIKLKTDPNPY 437 >gi|296332978|ref|ZP_06875435.1| GTP-binding protein EngA [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674918|ref|YP_003866590.1| ribosome 50S subunit assembly GTPase [Bacillus subtilis subsp. spizizenii str. W23] gi|296149829|gb|EFG90721.1| GTP-binding protein EngA [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413162|gb|ADM38281.1| GTPase essential for ribosome 50S subunit assembly [Bacillus subtilis subsp. spizizenii str. W23] Length = 436 Score = 263 bits (672), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 146/460 (31%), Positives = 244/460 (53%), Gaps = 29/460 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST+FNR+ +++++V + PG+TRDR+Y A FN++DT GI G Sbjct: 6 VAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGD 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +A Q+ Q E+A++EA +I+F+++ + G+T D + L + P+++ NK+D Sbjct: 66 EPFLA-QIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNT 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + N Y+ YSL F E IS H LG +L + + FK I K +EE Sbjct: 125 EMRANIYDFYSLGFGEPYPISGTHGLGLGDLLDAVAEHFKN---------IPETKYDEEV 175 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 ++ ++GRPNVGKS+L+N +LG R++ + +G TRD+V Sbjct: 176 -------------------VQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 ++ + I DTAGMRK ++ E+ E+ +V ++++++ E V+LD +QD Sbjct: 217 AFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDK 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 RI G AVV+ +NKWD V + +++ + + I +S T + + Sbjct: 277 RIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTTKRI 336 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 LM ++++ ++ R+ T+ LN + NP PT ++ Y TQ+ PPSF+ Sbjct: 337 HTLMPAIIKASENHSLRVQTNVLNDVIMDAVAMNPTPTHNGSRLKIYYATQVSVKPPSFV 396 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 +F P + SY+R+L NR+R F G PI++ ++ K Sbjct: 397 VFVNDPELMHFSYERFLENRIRDAFGFEGTPIKIFARARK 436 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 54/187 (28%), Positives = 88/187 (47%), Gaps = 15/187 (8%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI- 60 + ++G PNVGKS+L N ++ ++ +V N G TRD + N F IVDTAG+ Sbjct: 175 VVQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTAFTYNQQEFVIVDTAGMR 234 Query: 61 ADGKNCSIAKQMNDQTEL-AINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 GK ++ + L AI+ + ++ ++D + GI D I + + ++IV N Sbjct: 235 KKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVN 294 Query: 120 KMDT----RIAQRNFYE-----IYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNH 170 K D + F E LD+ I+ +SA L T +H+++ I K NH Sbjct: 295 KWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSA---LTTKRIHTLMPAIIKAS-ENH 350 Query: 171 PLEMIEN 177 L + N Sbjct: 351 SLRVQTN 357 >gi|332830164|gb|EGK02792.1| GTP-binding protein engA [Dysgonomonas gadei ATCC BAA-286] Length = 437 Score = 263 bits (672), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 163/460 (35%), Positives = 245/460 (53%), Gaps = 30/460 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNRL + + A+V G TRDR YG+ G F++VDT G Sbjct: 5 VAIVGRPNVGKSTLFNRLTESRQAIVDETSGTTRDRQYGKTEWGGQEFSLVDTGGWVVNS 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + ++N Q +AI EA +ILFL+D G+T D ++ + LR+ PII+VSNK D Sbjct: 65 DDVFESEINKQVSIAIEEADVILFLVDVMNGLTDLDSSVGNMLRRSKKPIILVSNKADNF 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 E Y+L + V ISA + GT +L +I F K++EE Sbjct: 125 NLHHQSAEFYALGLGDPVNISAINGAGTGDLLDLIITKF--------------TKKSEEE 170 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 E+I RIA+VGRPN GKS+ +N L+ R + + +G TRDS+ Sbjct: 171 HLEDIP--------------RIAIVGRPNAGKSSFVNALMDEERNIVTNIAGTTRDSIYT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 ++ N + DTAG+RK ++TE LE +V +S++++ + +++LDAT E QDL Sbjct: 217 RFDRFNMDFYLVDTAGIRKKGKVTEDLEYYSVIRSIKAIENSDVCVLMLDATQGIESQDL 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKN-LPQIGDIYINTISGRTGEG 363 I + +V+ +NKWD+V +K ++ AI+ L D I S T + Sbjct: 277 NIFSLIQKNRKGLVVCVNKWDLVENKEQIVIKTFEHAIRERLAPFTDFPIIFASAVTKQR 336 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP-PS 422 + ++ + E+ KT+I T LN L PPP+ +Y ++KYITQ+ ++ P+ Sbjct: 337 VLKVLETAKEVFVRRKTKIPTHKLNEVLLPIIEHTPPPSNKGKYIKIKYITQLPNTQVPT 396 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 F+ FC P I + YKR+L NR+R N+ LSG PI + + Sbjct: 397 FVFFCNLPQWIKDPYKRFLENRIRDNWDLSGTPINIIIRE 436 >gi|313893405|ref|ZP_07826977.1| ribosome biogenesis GTPase Der [Veillonella sp. oral taxon 158 str. F0412] gi|313442046|gb|EFR60466.1| ribosome biogenesis GTPase Der [Veillonella sp. oral taxon 158 str. F0412] Length = 444 Score = 263 bits (672), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 161/467 (34%), Positives = 253/467 (54%), Gaps = 40/467 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTLFN +V K++++V + PG+TRDR+Y A F ++DT GI Sbjct: 6 VAVVGRPNVGKSTLFNAIVNKRISIVEDIPGVTRDRIYFDAEWLNREFTMIDTGGIEFIT 65 Query: 65 NCS--IAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 S I K M Q ELAI EA +ILF++D K GI P D + + LR P+++V NK+D Sbjct: 66 ENSHVIPKMMRLQAELAIEEADVILFVVDGKQGIVPADEEVGNILRASGKPVVLVVNKID 125 Query: 123 TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 + + N YE Y+L + + ISA++ + +L K F + N +E Sbjct: 126 SVNQEPNIYEFYNLGLGDPIGISAKNLMNLGDLLDDTVKHFPP---------VGTNVDDE 176 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 ++ + +A++GRPNVGKS+L N LLG +R++ +G TRDS+ Sbjct: 177 DT-------------------IHVAIIGRPNVGKSSLTNALLGQDRVIVSDVAGTTRDSI 217 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 W + + DTAGMR+ S+I E++E+ ++ +S++SV + +++LDA +Q Sbjct: 218 DTYWTHGDQKFVLIDTAGMRRKSKIDEAVERYSIVRSLRSVDRSDIVVLVLDAQDGVTEQ 277 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMV--SDK--LNLLQDLRTKAIKNLPQIGDI-YINTIS 357 D +I + G VV+ +NKWD+V DK L +D+ + Q I + + ++ Sbjct: 278 DKKIAGYAYEAGKGVVIVVNKWDLVEKDDKTTLRFTEDIYEEL--GFLQFAPILFASALT 335 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 + L D++ V E + ++ R++T LN LQ Q NP P+ R ++ Y+TQ Sbjct: 336 KQRIHRLADMLKFVSE--QQYR-RVSTGTLNQLLQDAQTVNPVPSRNGRIPKIYYMTQAS 392 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 PP+F++F P I SY R+L NRLR +F G PIR+ + K Sbjct: 393 VKPPTFILFVNEPELIHFSYMRFLENRLRESFGFEGTPIRLVLRGKK 439 >gi|309791206|ref|ZP_07685738.1| small GTP-binding protein [Oscillochloris trichoides DG6] gi|308226768|gb|EFO80464.1| small GTP-binding protein [Oscillochloris trichoides DG6] Length = 525 Score = 263 bits (671), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 148/468 (31%), Positives = 244/468 (52%), Gaps = 35/468 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI---A 61 +A+VG PNVGKST FNRL+ ++ A+V + PG TRDR+YG NG F +VDTAG+ Sbjct: 71 VALVGRPNVGKSTFFNRLIGERRAIVEDMPGTTRDRIYGDTFWNGRDFTVVDTAGLLFGG 130 Query: 62 DGKNCSIA---KQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVS 118 D N +A ++ +Q LAI EA ++F++D + G+T D+ + LR + P+++ Sbjct: 131 DDPNLPVAEMSRRTREQANLAIEEADAVIFMVDGREGMTAADNEVADVLRGTSKPVVLAV 190 Query: 119 NKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 NK D+ + E Y+L+ E + +SA H LGT ++ + + F P + ++ Sbjct: 191 NKCDSVERNLDAVEFYALNLGEPIPMSAFHSLGTGDVLDRLVEAFP------PYQAPDDT 244 Query: 179 KRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 +R+ L IA+VGRPNVGKS+L+N+LLG R + + G T Sbjct: 245 ERH----------------------LHIAIVGRPNVGKSSLLNKLLGQERSVVSAIPGTT 282 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RDS+ + + + DTAG+R+ RI + +E+ +V ++++++ C+ ++L+DA Sbjct: 283 RDSIDTEITFHGERVTLIDTAGIRRSGRIEQGIEKYSVMRTLRAIERCDVALLLIDAEEG 342 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 QD I V + + + +NKWD++ Q+ + + I + IS Sbjct: 343 ITAQDTHIAGMVLDAKKGIAILVNKWDVIEKDNETFQEYEDQVRQAFKFIDYAPVLFISA 402 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIF-NRYNRLKYITQIQ 417 +G+ + ++ EI + R+ T LN++L++ L PP + + RL Y Q Q Sbjct: 403 LSGQRVSRVIQLAQEIYDQRQKRVPTGELNNFLRQAVLDQPPMAVRKGAHLRLYYAVQPQ 462 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 PP FL F + + SY RYL NRLR + G PI + F+S + Sbjct: 463 IEPPVFLFFANDGDLVHWSYGRYLENRLRDRYGFGGTPIVIVFRSREE 510 >gi|255533659|ref|YP_003094031.1| small GTP-binding protein [Pedobacter heparinus DSM 2366] gi|255346643|gb|ACU05969.1| small GTP-binding protein [Pedobacter heparinus DSM 2366] Length = 433 Score = 263 bits (671), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 161/461 (34%), Positives = 239/461 (51%), Gaps = 38/461 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTLFNRL + + A+V + G+TRDR YG A F ++DT G Sbjct: 5 IAIVGRPNVGKSTLFNRLTESRKAIVDDFSGVTRDRHYGVAEWTDKQFTVIDTGGYVANS 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +Q +AI EA ++LF++D GIT D I LR+ P+ IV NK+D Sbjct: 65 EDVFEAAIREQVIIAIEEATVLLFMVDVTTGITDLDDEIAQLLRRSKKPVFIVVNKVDNT 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 Q + Y EI IS+ GT +L + K F E+ Sbjct: 125 QLQNDAAVFYGFGLGEIHPISSMTGSGTGDLLDEVIKHF------------------EDV 166 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P+E + +I +VGRPNVGKS+LIN L+G R + +G TRDS+ I Sbjct: 167 PEEE------------NALPKITIVGRPNVGKSSLINALMGKERNIVTPIAGTTRDSIHI 214 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 +N H DTAG+RK +++ E++E +V ++++++ + I+++DA E QD+ Sbjct: 215 HYNQFGHEFMFIDTAGLRKKTKVKENIEFYSVMRTIKALEEADVVILMIDAMEGLESQDV 274 Query: 305 RIVDSVFNTGHAVVLALNKWDMV---SDKLNLLQD-LRTKAIKNLPQIGDIYINTISGRT 360 I +V+ +NKWD+V S +N+ +D +R K L DI I IS Sbjct: 275 NIFHLAEKNKKGIVILVNKWDLVEKNSKTVNIFEDQIRQK----LQPFTDIPIIFISALN 330 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 + + + + L++ K +I TS LN + PPP + +Y ++KYITQI +S Sbjct: 331 KQRIFQAVETALDVFKNRGKKIPTSKLNDVMLPIIENYPPPALKGKYIKVKYITQINASS 390 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 P F FC P I E YKR++ N+LR NF SG+PI++ F+ Sbjct: 391 PMFAFFCNLPQYIKEPYKRFIENKLRENFDFSGVPIQIYFR 431 >gi|78223517|ref|YP_385264.1| GTP-binding protein EngA [Geobacter metallireducens GS-15] gi|123571482|sp|Q39T85|DER_GEOMG RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|78194772|gb|ABB32539.1| GTP-binding protein Era, putative [Geobacter metallireducens GS-15] Length = 439 Score = 263 bits (671), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 147/462 (31%), Positives = 241/462 (52%), Gaps = 28/462 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +AIVG PNVGKSTLFNRLV ++ A+V + PG+TRDR Y F ++DT G Sbjct: 1 MMPLVAIVGRPNVGKSTLFNRLVGRRKAIVDDMPGVTRDRNYETVTRFEAPFILIDTGGF 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + +QM +Q++LA+ EA +I+FL+D +AG+TP D + LR+ P+ V NK Sbjct: 61 EPVSEDRLLQQMREQSQLAMEEADVIIFLMDGRAGLTPSDVEVVEMLRRVKKPVFFVVNK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D + + Y+L + ISAEH+ G ++L + K Sbjct: 121 VDGEKIENEAADFYTLGIGTLHTISAEHNRGVNDLMEEVVAALP--------------KS 166 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 + E+IT RIAVVGRPNVGKS+L+NRLLG+ R++ G TRD Sbjct: 167 STRLDDEDIT--------------RIAVVGRPNVGKSSLVNRLLGFERVVANPTPGTTRD 212 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 SV + + DTAG+R+ + T+ LE+ +V S++S+ + +++++A Sbjct: 213 SVDTLFACNKKRYLLIDTAGIRRKGKTTQKLEKYSVVDSLRSIERADVVLIIINAEEGVT 272 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 +QD RI F G A + +NKWD ++ + L + + I +S ++ Sbjct: 273 EQDERIAGYAFEAGKACIFVVNKWDTLAKDNSTLGKFVDQIKTEFKYLSFAPIVFVSAKS 332 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G+ ++ +M V + + R++TS LN + ++ P R + + TQ+ + P Sbjct: 333 GQRINRVMEEVERVMAQYSKRVSTSDLNRVFSEAVEKHHAPLSHGRRVKFYFATQVGTKP 392 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 P+F++F P + SY+RYL+N+ R F +G P+++ F+ Sbjct: 393 PTFVLFTNQPEGVHFSYERYLMNKFREAFDFTGSPLKIIFRG 434 >gi|26987593|ref|NP_743018.1| GTP-binding protein EngA [Pseudomonas putida KT2440] gi|37999649|sp|Q88PJ3|DER_PSEPK RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|24982270|gb|AAN66482.1|AE016277_1 GTP-binding protein EngA [Pseudomonas putida KT2440] Length = 487 Score = 263 bits (671), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 161/475 (33%), Positives = 248/475 (52%), Gaps = 23/475 (4%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ IA+VG PNVGKST+FNRL K + A+VG+ G+TRDR YG A G F ++DT GI Sbjct: 1 MVPVIALVGRPNVGKSTMFNRLTKTRDAIVGDLSGLTRDRQYGDASWQGRSFILIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 G + ++M +Q+ +AI EA +LFL+D++AG+T D I LRK+N I+V+NK Sbjct: 61 T-GDEVGMDEKMAEQSLMAIEEADYVLFLVDARAGMTAADQMIAEHLRKRNKAAILVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D E + + ++ G + L + + Sbjct: 120 IDNIDPDVARAEFSPMGMGNAIPVAGSQGRGINALMEAVLGHLPRDA------------- 166 Query: 181 NEESPKENITSEGKSSVKNISKP-----LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQS 235 EE E +EG+ +V+ I P ++IA++GRPNVGKSTL+NR+LG R++ + Sbjct: 167 -EEEALEQDVAEGEEAVR-IPGPSEKDGIKIAIIGRPNVGKSTLVNRMLGEERVVVYDEP 224 Query: 236 GITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDA 295 G TRDS+ I + DTAG+RK +I E +E+ +V K++Q+++ I ++DA Sbjct: 225 GTTRDSIYIPFERDGEKYTFIDTAGVRKRGKIHEEVEKFSVVKTLQAIKDANVVIFVMDA 284 Query: 296 TIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINT 355 DL ++ G A+V+ALNKWD + ++T+ + L + I+ Sbjct: 285 REGVVDHDLNLLGFALEAGRAIVIALNKWDGMEPGERAY--VKTELERRLFFVDFADIHF 342 Query: 356 ISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQ 415 IS G G+ +L SV + TR TS L L+ ++ PP + R +L+Y Sbjct: 343 ISALHGTGVGNLYKSVQAAFQSAVTRWPTSRLTQILEDAVSEHQPPMVNGRRIKLRYAHL 402 Query: 416 IQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 ++PP +I + IP+SY RYL N R L G PIR+ ++ +NPY K Sbjct: 403 GGANPPLIVIHGNQTDSIPKSYSRYLENTYRRVLKLVGTPIRIEYKGGENPYEGK 457 >gi|317403342|gb|EFV83855.1| GTP-binding protein engA [Achromobacter xylosoxidans C54] Length = 451 Score = 263 bits (671), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 153/467 (32%), Positives = 249/467 (53%), Gaps = 24/467 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTLFNRL + + A+V + G+TRDR YG+ + + F ++DT G Sbjct: 7 VALVGRPNVGKSTLFNRLTRSRAALVADFSGLTRDRHYGEGRVGEIPFIVIDTGGFEPVA 66 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIP-IIIVSNKMDT 123 I +M QT AI EA +++FL+D++AG+ +DH I + LRK +++ NK + Sbjct: 67 KDGILLEMARQTRQAIAEADVVVFLVDARAGLNAHDHEIATLLRKSGQQRVLLAVNKAEG 126 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 A E + L + ISA H G +L +E+ + Sbjct: 127 MGAGAAIAEFHELGLGQPYPISAAHGDGIVDL----------------IELALQDLAEPP 170 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 + +E EG+ + +++A+VGRPNVGKSTLIN L+G R++ G TRD++ Sbjct: 171 AEEEEPAEEGEHDHR-----IKLAIVGRPNVGKSTLINTLMGEERVIAFDMPGTTRDAIE 225 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 I + + DTAG+RK ++ E++E+ +V K++Q++ +++LDA +QD Sbjct: 226 IDFERDGRRYTLIDTAGLRKRGKVFEAVEKFSVIKTLQAIEASNVVLLMLDAQTEISEQD 285 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 I V TG AVV+A+NKWD + + + + + ++ L + ++TIS G+G Sbjct: 286 AHIAGFVLETGRAVVVAVNKWDGLDGEEK--ERIEREFMRKLRFLSFARVHTISALRGQG 343 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 + L+ SV + +++T L LQ Q PPP +++Y Q +PP Sbjct: 344 IKPLLKSVNAAHAAAFAKLSTPKLTRELQAAVEQQPPPRKGIFRPKMRYAHQGGQNPPLV 403 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +I + +P+SY+RYL R R F L+G P+R+ F+SS NPY ++ Sbjct: 404 VIHGNALDAVPDSYRRYLETRFRNAFDLAGTPLRIEFKSSHNPYAQE 450 >gi|226946062|ref|YP_002801135.1| GTP-binding protein EngA [Azotobacter vinelandii DJ] gi|259645867|sp|C1DE52|DER_AZOVD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|226720989|gb|ACO80160.1| Small GTP-binding protein EngA [Azotobacter vinelandii DJ] Length = 491 Score = 263 bits (671), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 163/470 (34%), Positives = 243/470 (51%), Gaps = 10/470 (2%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ IA+VG PNVGKSTLFNRL K + A+V + G+TRDR YG+A G + ++DT GI Sbjct: 1 MVPVIALVGRPNVGKSTLFNRLTKTRDAIVAEYAGLTRDRQYGEAKWQGRTYIVIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + G I +M +Q+ AI EA +LF++DS+AG+T D I LRK+N +V+NK Sbjct: 61 S-GDEEGIDAKMAEQSLQAIEEADAVLFMVDSRAGMTAADQLIAEHLRKRNKRSFLVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +DT E L + + I+A H G + + IF + E Sbjct: 120 VDTVDPDIARAEFSPLGLGDALPIAAAHGRGINAMLEAALGIFPRDDEGEEGEGEAEVVA 179 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 E PK K +K IA++GRPNVGKSTL+NR+LG R++ Q+G TRD Sbjct: 180 EGEEPKRVPGPSEKDGIK-------IAIIGRPNVGKSTLVNRMLGEERVIVYDQAGTTRD 232 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ I + + DTAG+R+ +I E++E+ +V K++Q+++ I ++DA Sbjct: 233 SIYIPFERDEDKYTLIDTAGVRRRGKIFEAVEKFSVVKTLQAIQDANVVIFVMDAREGVV 292 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 + DL ++ V TG A+V+ALNKWD + + + DI+ IS Sbjct: 293 EHDLNLLGFVLETGRALVIALNKWDGMEPGQRDYVKIELERRLMFADFADIHF--ISALH 350 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G G+ L SV + TR TS L L+ ++ PP + R +L+Y ++P Sbjct: 351 GTGVGHLYKSVQAAFQSAVTRWPTSRLTRILEDAVQEHQPPLVNGRRIKLRYAHLGGANP 410 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 P +I +P++Y RYL N R L G PIR+ ++ NPY K Sbjct: 411 PLIVIHGNQVEAVPKAYTRYLENTYRRVLKLVGTPIRIEYKGGDNPYEGK 460 >gi|320529134|ref|ZP_08030226.1| ribosome-associated GTPase EngA [Selenomonas artemidis F0399] gi|320138764|gb|EFW30654.1| ribosome-associated GTPase EngA [Selenomonas artemidis F0399] Length = 441 Score = 263 bits (671), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 151/466 (32%), Positives = 252/466 (54%), Gaps = 37/466 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTLFN++ KK++++V + PG+TRDR+Y A F I+DT GI + Sbjct: 6 VAVVGRPNVGKSTLFNQIGKKRVSIVDDMPGVTRDRIYMDAEWLNHEFTIIDTGGIEFDE 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + I + M Q ELA+ EA +ILFL+D +AG+T D + LR+ N P+I+ NK+D+ Sbjct: 66 SDHILRSMRSQAELAMEEADVILFLVDGRAGLTASDEEVGRLLRRTNKPVILAVNKIDSF 125 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + Y+ Y+L + + ISA + + +L + F+ Sbjct: 126 ERESLIYDFYALGLGDPIPISASNAMNLGDLLDAVVAAFR-------------------- 165 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 + + + + IAVVGRPNVGKS+L+NRLLG R++ G TRD++ Sbjct: 166 --------AEETEEREPDEIAIAVVGRPNVGKSSLVNRLLGEERVIVSDVPGTTRDAIDT 217 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + DTAGMR+ +IT +E+ +V +S++++ +++++A +QD Sbjct: 218 HFTRDGAKYLLIDTAGMRRKGKITLPVERYSVMRSLRAIDRAGVVLMVINAAEGILEQDT 277 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDK-----LNLLQDLRTKAIKNLPQIGDIYINTISGR 359 +I V +G V++ +NKWD+ +K L DLR + + L +Y + ++G+ Sbjct: 278 KIAGYVHESGKGVIIVVNKWDIFPEKNDKSTLRFTDDLREE-LGFLQYAPVLYTSALTGQ 336 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 E + +L+ V E + RI TS LN ++ NPPPT + ++ ++TQ+ Sbjct: 337 RVERVTELVKYVAEQQSM---RIKTSVLNELIRDAVSVNPPPTKKGKQLKILFMTQVGIV 393 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 PP+F+IF P+ + SY R++ NRLR +F G P+R+ ++ K Sbjct: 394 PPTFIIFVNDPDLMHFSYLRFIENRLRESFGFEGTPLRLVVRARKE 439 >gi|227535137|ref|ZP_03965186.1| GTP-binding protein engA [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187182|gb|EEI67249.1| GTP-binding protein engA [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 445 Score = 263 bits (671), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 141/461 (30%), Positives = 248/461 (53%), Gaps = 30/461 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AIVG PNVGKST+FNR++ +++++V + PG+TRDR+YG + G F ++DT GI G Sbjct: 15 TLAIVGRPNVGKSTIFNRILGERVSIVEDTPGVTRDRIYGTSEWLGKEFAVIDTGGIDLG 74 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 +A Q+ DQ E+AI+EA +ILFL D ++G+T D + L + P+++ NK+D Sbjct: 75 DEPFLA-QIKDQAEIAIDEADVILFLADIESGVTDADERVAQILYRAKKPVVLAVNKVDN 133 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 +++ Y+ YSL F E +S H +G ++ + F Sbjct: 134 PERRQDIYDFYSLGFGEPYPLSGTHGIGLGDVLDAVLAAF-------------------- 173 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 P E+ + E S ++ +++GRPNVGKS+L+N +LG NR++ G TRD++ Sbjct: 174 -PSEDKSVEDDS--------IKFSLIGRPNVGKSSLVNAILGENRVIVSPIEGTTRDAID 224 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + + + DTAG+RK ++ E+ E+ V ++++++ + + +++A +QD Sbjct: 225 TKFEAVDETFTMIDTAGIRKRGKVYENTEKYAVMRALRAIDRSDVVLFVINAEEGIREQD 284 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 ++ G +++ +NKWD V + ++D + + I +S +T + Sbjct: 285 KKVAGYAHEAGRGIIIVVNKWDTVEKDNHTMKDFENLIRQEFQYLDYAPIIFVSAKTKQR 344 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 L L ++ +++ RI +S LN L P PT+ + R+ Y+TQ+ PP+F Sbjct: 345 LQSLPAMIVAVSENQTRRIQSSVLNDVLMDAITVTPTPTVNGKRLRIYYMTQVAVKPPTF 404 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 ++F P+ + SY+R+LIN+LR F SG PI + + K Sbjct: 405 VVFVNDPDLLHFSYERFLINQLRQAFDFSGTPIHIIARKRK 445 >gi|169831333|ref|YP_001717315.1| small GTP-binding protein [Candidatus Desulforudis audaxviator MP104C] gi|238688334|sp|B1I462|DER_DESAP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|169638177|gb|ACA59683.1| small GTP-binding protein [Candidatus Desulforudis audaxviator MP104C] Length = 438 Score = 263 bits (671), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 149/462 (32%), Positives = 237/462 (51%), Gaps = 29/462 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 +AIVG PNVGKSTLFNR++ ++ AVV PG+TRDRLY + G F +VDT GI Sbjct: 5 VVAIVGRPNVGKSTLFNRILGRQAAVVDAEPGVTRDRLYQEVDWAGRHFILVDTGGIESQ 64 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 +A ++ DQ A+ EA LIL+++D AG+ D + + LR+ + P+++V NK+D Sbjct: 65 AGEDMANRVFDQVRRAMAEAQLILYVLDGNAGLLEEDVQVAALLRRSSKPVLVVVNKVDD 124 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + Y L E V +SA L +L ++ + + Sbjct: 125 FSRPLPLADFYRLGLGEPVPVSAAQGLNIGDLLDLV---------------VAGMPAGAD 169 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 P+ S+P+RIAVVGRPNVGKS+L+N +LG R++ G TRD+V Sbjct: 170 EPR--------------SEPVRIAVVGRPNVGKSSLVNAILGEERVIVSDVPGTTRDAVD 215 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + DTAGMR+ +RI ES+E +V ++ +++ + +V+LD T QD Sbjct: 216 TLFRRDGREYVFIDTAGMRRKARIRESIEYYSVLRAKKALERSDLALVVLDFTDGVTNQD 275 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 RI G ++ +NKWD+ + + + L IG + +S +G G Sbjct: 276 QRIAGLAEEAGKGTIIVVNKWDLAEGSGVSASRYQEEVRRELIFIGYAPVLCVSAVSGLG 335 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 + ++ +V + ++ +I TS LN LQ + +PPP + +L Y TQ+ + PP+F Sbjct: 336 VPKILDTVESVMGEYRRQIPTSMLNRILQDAFMISPPPARKGKRLKLMYCTQVATGPPAF 395 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 L+F P + Y+RYL N +R G+P+R+ F+ ++ Sbjct: 396 LLFVNDPGLVSPGYRRYLENEVRRALGFKGVPVRILFRRRES 437 >gi|295132650|ref|YP_003583326.1| GTP-binding protein EngA [Zunongwangia profunda SM-A87] gi|294980665|gb|ADF51130.1| GTP-binding protein EngA [Zunongwangia profunda SM-A87] Length = 434 Score = 263 bits (671), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 147/457 (32%), Positives = 239/457 (52%), Gaps = 29/457 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST FNRL++++ A+V + G+TRDR YG++ NG F+++DT G G Sbjct: 5 VAIVGRPNVGKSTFFNRLIQRREAIVDSVSGVTRDRHYGKSDWNGRNFSLIDTGGYVIGS 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +++ Q ELAI EA I+F++D ++GITP D + LRK N P+ + NK+D Sbjct: 65 DDVFEAEIDKQVELAIGEADAIIFMVDVESGITPMDEDVAILLRKVNKPVFLAVNKVDNN 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 N E Y+L E I++ + GT +L + E Sbjct: 125 KRLENAVEFYALGLGEYFPIASTNGSGTGDLLDAVI---------------------ESL 163 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P+E E S+ R AVVGRPN GKS+ IN L+G +R + +G TRDS+ Sbjct: 164 PEETYKEE--------SELPRFAVVGRPNAGKSSFINALIGEDRYIVTDIAGTTRDSIDT 215 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 +N + DTAG+R+ S++ E LE +V +S++++ + +++LDAT F+ Q Sbjct: 216 KYNRFGFEFNLVDTAGIRRKSKVKEDLEFYSVMRSVRAIENADVCLLVLDATRGFDGQVQ 275 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 I +V+ +NKWD+V + N ++ + + D+ + IS + + Sbjct: 276 NIFWLAQRNRKGIVILVNKWDLVEKETNTMKSYEQMIRREIEPFTDVPVIFISVLNKQRI 335 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 + + +++ + +I T LN + NPPP I +Y ++K+ TQ+ + P F Sbjct: 336 FKAIETAVKVFENRSKKIKTRELNDVMLPIIENNPPPAIKGKYVKVKFCTQLPTPQPQFA 395 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 FC P + + YKR++ N+LR F G+PI + F+ Sbjct: 396 FFCNLPQYVKDPYKRFIENKLREEFDFKGVPITVYFR 432 >gi|289666002|ref|ZP_06487583.1| GTP-binding protein EngA [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 465 Score = 263 bits (671), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 156/472 (33%), Positives = 251/472 (53%), Gaps = 31/472 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVI-FNIVDTAG 59 M+ +A+VG PNVGKST+FN L + + A+V + PG+TRDR YG ++ F +VDT G Sbjct: 1 MLPLVALVGRPNVGKSTIFNALTRTRDALVHDQPGVTRDRNYGVCRLDEQQPFIVVDTGG 60 Query: 60 IADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 IA G +A Q A EA L+LF++D + G + D I ++LRK P ++V N Sbjct: 61 IA-GDEEGLAGATARQARAAAGEADLVLFVVDGREGASSLDDEILAWLRKLARPTVLVIN 119 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNK 179 K+D + E F ++V +SA H G EL + ++ E+++N+ Sbjct: 120 KIDGTDEETVRSEFARYGFSDVVALSAAHRQGIDELLEEVAARLPEEGSG---ELLDNDP 176 Query: 180 RNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITR 239 +RIA VGRPNVGKSTL+NRLLG R++ G TR Sbjct: 177 AR----------------------VRIAFVGRPNVGKSTLVNRLLGEERMIASEVPGTTR 214 Query: 240 DSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPF 299 DS+++ + DTAG+R+ ++ E++E+ + K++Q++ C+ +++LDAT Sbjct: 215 DSIAVDLERDGRQYRLIDTAGLRRRGKVEEAVEKFSAFKTLQAIEQCQVAVLMLDATEGV 274 Query: 300 EKQDLRIVDSVFNTGHAVVLALNKWDMVSD-KLNLLQDLRTKAIKNLPQIGDIYINTISG 358 QD I+ ++ + G A+V+A+NKWD SD + +DL ++ + + + I+ + Sbjct: 275 TDQDATILGAILDAGRALVVAINKWDGQSDYQRAQAEDLLSRKLGFVSWAEAVRISALH- 333 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 G G+ +L ++ + +TS +N L+ NPPP+I ++L+Y+ + Sbjct: 334 --GSGMRELFQAIHRAHASATHEFSTSEVNQALEIAYETNPPPSIRGHVSKLRYVHPGGA 391 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP+F++ T +PESYKRYL N R F L G P+R F+ NPY K Sbjct: 392 NPPTFIVHGTRLKVLPESYKRYLENFFRKRFKLVGTPVRFIFREGANPYEGK 443 >gi|223557988|gb|ACM90994.1| GTPase [uncultured bacterium URE4] Length = 424 Score = 263 bits (671), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 151/447 (33%), Positives = 236/447 (52%), Gaps = 29/447 (6%) Query: 13 VGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNCSIAKQM 72 +GKSTLFNRLV + A+V G+TRDR YG+ G F++VDT G + + Sbjct: 1 MGKSTLFNRLVGMRQAIVDETAGVTRDRHYGKCEWCGTEFSVVDTGGYTSNSDDVFEDAI 60 Query: 73 NDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQRNFYE 132 Q +A+ EA ++LF+ +++ GIT YD I LR+ P+++ NK+DT + Y+ Sbjct: 61 RRQVVIAVEEADVVLFMCEAQTGITDYDAEIADLLRRSKKPVVLCVNKVDTGEKMYDAYD 120 Query: 133 IYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEESPKENITSE 192 Y L E+ ISA + GT +L I K+ + P EE +I Sbjct: 121 FYGLGLGEVWTISAANGSGTGDLLDEIVKVLPKDVP-------------EEEDHSDIP-- 165 Query: 193 GKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHP 252 IA+VGRPNVGKS+L N LLG R + +G TRDS+S +N H Sbjct: 166 ------------HIAIVGRPNVGKSSLTNALLGEERNIVTPVAGTTRDSISTYYNKFGHE 213 Query: 253 IEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFN 312 + DTAGMRK +++TE LE +V ++M+++ + I+++DAT+ E QD+ I + + Sbjct: 214 FMLVDTAGMRKRAKVTEDLEFYSVLRAMRTIEHSDVCILMIDATLGMEAQDMNIFNIIQK 273 Query: 313 TGHAVVLALNKWDMVSDKLNLLQDLRTKAIK-NLPQIGDIYINTISGRTGEGLDDLMVSV 371 V+ +NKWD+ + N ++D T+A+K L DI I S + + +++ + Sbjct: 274 NRKGCVIVVNKWDLFEKESNTMRDY-TEALKARLAPFNDIPIVFTSVINKQRILEVLNAA 332 Query: 372 LEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFLIFCTFPN 431 + + RI TS LN + PPP +Y ++KY+TQ+ + P F FC P Sbjct: 333 AHVAENMTRRIPTSELNDAMLPEIENYPPPAWKGKYIKIKYVTQLPTRTPQFAFFCNLPQ 392 Query: 432 KIPESYKRYLINRLRINFSLSGIPIRM 458 + + YKR+L N+LR +F +G PI++ Sbjct: 393 WVKDPYKRFLENKLRQHFDFTGCPIQV 419 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 40/122 (32%), Positives = 62/122 (50%), Gaps = 6/122 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKS+L N L+ ++ +V G TRD + G F +VDTAG+ K Sbjct: 167 IAIVGRPNVGKSSLTNALLGEERNIVTPVAGTTRDSISTYYNKFGHEFMLVDTAGMR--K 224 Query: 65 NCSIAKQMNDQTEL----AINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + + + + L I + + + +ID+ G+ D I + ++K +IV NK Sbjct: 225 RAKVTEDLEFYSVLRAMRTIEHSDVCILMIDATLGMEAQDMNIFNIIQKNRKGCVIVVNK 284 Query: 121 MD 122 D Sbjct: 285 WD 286 >gi|254519255|ref|ZP_05131311.1| small GTP-binding protein [Clostridium sp. 7_2_43FAA] gi|226913004|gb|EEH98205.1| small GTP-binding protein [Clostridium sp. 7_2_43FAA] Length = 438 Score = 263 bits (671), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 151/460 (32%), Positives = 248/460 (53%), Gaps = 28/460 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFN+L +++++V + PG+TRDR+Y QA F ++DT GI + Sbjct: 6 VAIVGRPNVGKSTLFNKLAGQRISIVQDTPGVTRDRVYAQAEWLNYNFTMIDTGGIEPER 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I KQM Q +AI A +I+F++D K G+TP DH + + LRK +++V NK+D+ Sbjct: 66 EDIIVKQMRRQANIAIETADVIIFVVDGKEGLTPADHEVANMLRKSKKEVVLVVNKVDSL 125 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + N +E Y+L + V ISA LG ++ + + F +K NEE Sbjct: 126 KEEENAWEFYNLGIGDPVTISASQALGLGDMLDRVVENF--------------DKFNEED 171 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 ++ +RIA++G+PNVGKS+LINRLLG RL+ G TRDS+ Sbjct: 172 EEDEF--------------IRIAMIGKPNVGKSSLINRLLGEERLIVSDIPGTTRDSIDS 217 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + + DTAG+R+ S++ E +E+ +V ++ ++ + I+++DAT +QD Sbjct: 218 ALETEQGKFILVDTAGLRRKSKVKEEIERYSVIRTYAAIERADVCILMIDATEGVTEQDE 277 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 +I+ A+++ +NKWD++ +Q + + NL + IS +TG+ Sbjct: 278 KIIGYAHEMNKAIMVIVNKWDLIEKDDKTMQRYKEELQMNLKFLKYAKYLFISAKTGQRT 337 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 ++ + E + RI T LN + K L PP + + ++ Y TQ+ + PP F+ Sbjct: 338 HKVLETAKECYDNYSKRIPTGILNEVINKAVLMKEPPIVGLKRMKIYYATQVAAKPPKFI 397 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 F + SY+RYL N+LR +F SG I++ ++ K Sbjct: 398 FFVNDSSASHFSYQRYLENQLRESFDFSGTGIQIEYRERK 437 >gi|326575993|gb|EGE25916.1| GTP-binding protein EngA [Moraxella catarrhalis CO72] Length = 472 Score = 263 bits (671), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 155/469 (33%), Positives = 256/469 (54%), Gaps = 34/469 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA--D 62 +A++G PNVGKSTLFN+L K + A+V + G+TRDR YG A F +VDT GI D Sbjct: 7 VALIGRPNVGKSTLFNQLTKSRQALVADLAGLTRDRQYGDAHFENKSFIVVDTGGIGEMD 66 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + +I M Q+ AI+EA +++F++D++AG+ D I FL P+ +V+NKMD Sbjct: 67 DGSGNIDDYMATQSYTAIHEADIVVFVVDARAGLIGADSEIAHFLHTLGKPVFLVANKMD 126 Query: 123 TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 + + + E ++L F E +A H G + L LE + + E Sbjct: 127 G-VHEAAYAEFFALGFGEPYATAASHGRGVTNL----------------LESLTADM-PE 168 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 + PK+ + S K L++A++GRPNVGKSTL+NRLLG +R++ G TRDS+ Sbjct: 169 DMPKDELDS----------KTLKLAIIGRPNVGKSTLVNRLLGEDRVVVFDMPGTTRDSI 218 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 I + + + DTAG+R+ RI E +E+ +V K++Q+++ +V++DA Q Sbjct: 219 YIPFEREGRSYVLIDTAGVRRRGRIDEKVEKFSVVKTLQAIKDANVVMVVIDAKEGIVDQ 278 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVS-DKLNLLQDLRTKAIKNLPQIGDIYINTISGRTG 361 DL ++ + G A+V+A+NKWD +S D+ + ++ + +P + I+ IS G Sbjct: 279 DLHMLGYALDAGRAIVVAINKWDGLSQDQKDFVKIEIDRRFNFVPW---VKIHLISALYG 335 Query: 362 EGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 G+ L S+ + + +++T+ L L+ +PPP + R +L+Y +PP Sbjct: 336 NGVGKLYPSIHKAYEASMFKVSTNQLTRILEDAVASHPPPMVGGRRIKLRYAHLGGHNPP 395 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +I + +P+SY+RYL N R + L G P+++ F+ + NPY K Sbjct: 396 VIVIHGNQTSSLPKSYQRYLENVFRNVYKLEGTPLQVEFKQNANPYEGK 444 >gi|191638373|ref|YP_001987539.1| GTP-binding protein EngA [Lactobacillus casei BL23] gi|301066427|ref|YP_003788450.1| putative GTPase [Lactobacillus casei str. Zhang] gi|238693036|sp|B3WE80|DER_LACCB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|190712675|emb|CAQ66681.1| GTP-binding protein engA [Lactobacillus casei BL23] gi|300438834|gb|ADK18600.1| Predicted GTPase [Lactobacillus casei str. Zhang] gi|327382401|gb|AEA53877.1| GTPase family protein [Lactobacillus casei LC2W] gi|327385602|gb|AEA57076.1| GTPase family protein [Lactobacillus casei BD-II] Length = 435 Score = 262 bits (670), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 141/461 (30%), Positives = 248/461 (53%), Gaps = 30/461 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AIVG PNVGKST+FNR++ +++++V + PG+TRDR+YG + G F ++DT GI G Sbjct: 5 TLAIVGRPNVGKSTIFNRILGERVSIVEDTPGVTRDRIYGTSEWLGKEFAVIDTGGIDLG 64 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 +A Q+ DQ E+AI+EA +ILFL D ++G+T D + L + P+++ NK+D Sbjct: 65 DEPFLA-QIKDQAEIAIDEADVILFLADIESGVTDADERVAQILYRAKKPVVLAVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 +++ Y+ YSL F E +S H +G ++ + F Sbjct: 124 PERRQDIYDFYSLGFGEPYPLSGTHGIGLGDVLDAVLAAF-------------------- 163 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 P E+ + E S ++ +++GRPNVGKS+L+N +LG NR++ G TRD++ Sbjct: 164 -PSEDKSVEDDS--------IKFSLIGRPNVGKSSLVNAILGENRVIVSPIEGTTRDAID 214 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + + + DTAG+RK ++ E+ E+ V ++++++ + + +++A +QD Sbjct: 215 TKFEAVDETFTMIDTAGIRKRGKVYENTEKYAVMRALRAIDRSDVVLFVINAEEGIREQD 274 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 ++ G +++ +NKWD V + ++D + + I +S +T + Sbjct: 275 KKVAGYAHEAGRGIIIVVNKWDTVEKDNHTMKDFENLIRQEFQYLDYAPIIFVSAKTKQR 334 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 L L ++ +++ RI +S LN L P PT+ + R+ Y+TQ+ PP+F Sbjct: 335 LQSLPAMIVAVSENQTRRIQSSVLNDVLMDAITVTPTPTVNGKRLRIYYMTQVAVKPPTF 394 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 ++F P+ + SY+R+LIN+LR F SG PI + + K Sbjct: 395 VVFVNDPDLLHFSYERFLINQLRQAFDFSGTPIHIIARKRK 435 >gi|28868645|ref|NP_791264.1| GTP-binding protein EngA [Pseudomonas syringae pv. tomato str. DC3000] gi|213971514|ref|ZP_03399625.1| GTP-binding protein EngA [Pseudomonas syringae pv. tomato T1] gi|301386119|ref|ZP_07234537.1| GTP-binding protein EngA [Pseudomonas syringae pv. tomato Max13] gi|302060181|ref|ZP_07251722.1| GTP-binding protein EngA [Pseudomonas syringae pv. tomato K40] gi|302135124|ref|ZP_07261114.1| GTP-binding protein EngA [Pseudomonas syringae pv. tomato NCPPB 1108] gi|37999588|sp|Q886Y6|DER_PSESM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|28851883|gb|AAO54959.1| GTP-binding protein EngA [Pseudomonas syringae pv. tomato str. DC3000] gi|213923706|gb|EEB57290.1| GTP-binding protein EngA [Pseudomonas syringae pv. tomato T1] gi|330872875|gb|EGH07024.1| GTP-binding protein Der [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330965919|gb|EGH66179.1| GTP-binding protein Der [Pseudomonas syringae pv. actinidiae str. M302091] gi|331019376|gb|EGH99432.1| GTP-binding protein Der [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 489 Score = 262 bits (670), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 159/467 (34%), Positives = 250/467 (53%), Gaps = 11/467 (2%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ IA+VG PNVGKST+FNRL + + A+VG+ G+TRDR YG+A G + ++DT GI Sbjct: 1 MVPVIALVGRPNVGKSTMFNRLTRTRDAIVGDLSGLTRDRQYGEAKWQGRSYILIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + G + ++M +Q+ LAI EA ++LFL+D++AG T D I LRK+N +V+NK Sbjct: 61 S-GDEHGMDEKMAEQSLLAIEEADVVLFLVDARAGYTAADQMIGEHLRKRNKRSYVVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D E + + + ++ H G S++ + + F + +E Sbjct: 120 IDNIDENLARAEFSPMGLGDAIPVAGAHGRGISQMLEIALREFPKDEDELEEGEVEEVAE 179 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 +E+ + SE K +K IA++GRPNVGKSTL+NR+LG +R++ + G TRD Sbjct: 180 GQEAKRIPGPSE-KDGIK-------IAIIGRPNVGKSTLVNRMLGEDRVIVYDEPGTTRD 231 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ I + + DTAG+RK +I E +E+ +V K++Q+++ I ++DA Sbjct: 232 SIYIPFERNEEKYTLIDTAGVRKRGKIHEEVEKFSVVKTLQAIKDANVVIFVMDAREGVV 291 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 DL ++ G A+V+ALNKWD ++ + + DI+ IS Sbjct: 292 DHDLNLLGFALEAGRALVIALNKWDGMTPGERDFVKIELERRLFFVDFADIHF--ISALH 349 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G G+ +L SV K TR TS L L+ ++ PP + +R +L+Y ++P Sbjct: 350 GTGVGNLYQSVQNSFKSAVTRWPTSRLTQILEDAVSEHAPPMVGSRRIKLRYAHLGGANP 409 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 P +I K+P+SY RYL N R L G PIR+ F+ +NPY Sbjct: 410 PLIVIHGNQVEKVPKSYVRYLENTYRRVLKLVGTPIRIEFKGGENPY 456 >gi|18310737|ref|NP_562671.1| GTP-binding protein EngA [Clostridium perfringens str. 13] gi|110798819|ref|YP_696441.1| GTP-binding protein EngA [Clostridium perfringens ATCC 13124] gi|110803315|ref|YP_699041.1| GTP-binding protein EngA [Clostridium perfringens SM101] gi|168207282|ref|ZP_02633287.1| putative GTP-binding protein Era [Clostridium perfringens E str. JGS1987] gi|168210612|ref|ZP_02636237.1| putative GTP-binding protein Era [Clostridium perfringens B str. ATCC 3626] gi|168214232|ref|ZP_02639857.1| putative GTP-binding protein Era [Clostridium perfringens CPE str. F4969] gi|168217042|ref|ZP_02642667.1| putative GTP-binding protein Era [Clostridium perfringens NCTC 8239] gi|169342731|ref|ZP_02863772.1| putative GTP-binding protein Era [Clostridium perfringens C str. JGS1495] gi|182625851|ref|ZP_02953617.1| putative GTP-binding protein Era [Clostridium perfringens D str. JGS1721] gi|26006720|sp|Q8XJK1|DER_CLOPE RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|123148666|sp|Q0TPJ9|DER_CLOP1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|123341699|sp|Q0SS66|DER_CLOPS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|18145418|dbj|BAB81461.1| probable GTP binding protein [Clostridium perfringens str. 13] gi|110673466|gb|ABG82453.1| ribosome-associated GTPase EngA [Clostridium perfringens ATCC 13124] gi|110683816|gb|ABG87186.1| ribosome-associated GTPase EngA [Clostridium perfringens SM101] gi|169299237|gb|EDS81307.1| putative GTP-binding protein Era [Clostridium perfringens C str. JGS1495] gi|170661368|gb|EDT14051.1| putative GTP-binding protein Era [Clostridium perfringens E str. JGS1987] gi|170711316|gb|EDT23498.1| putative GTP-binding protein Era [Clostridium perfringens B str. ATCC 3626] gi|170714259|gb|EDT26441.1| putative GTP-binding protein Era [Clostridium perfringens CPE str. F4969] gi|177908885|gb|EDT71377.1| putative GTP-binding protein Era [Clostridium perfringens D str. JGS1721] gi|182380862|gb|EDT78341.1| putative GTP-binding protein Era [Clostridium perfringens NCTC 8239] Length = 438 Score = 262 bits (670), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 149/465 (32%), Positives = 252/465 (54%), Gaps = 36/465 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTLFN+L K++++V + PG+TRDR+Y ++ F ++DT GI Sbjct: 6 VAMVGRPNVGKSTLFNKLAGKRISIVQDTPGVTRDRVYAESEWLNRKFTMIDTGGIEPES 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + I KQM Q ++AI A +I+F++D K G+T D + LRK P+++V NK+D Sbjct: 66 SDIIVKQMRRQAQIAIEMADVIVFVVDGKEGLTAADQEVAQMLRKSKKPVVLVVNKIDRL 125 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + N YE Y+L + + ISA LG ++ + K F N P Sbjct: 126 ALEENSYEFYNLGIGDPITISASQGLGLGDMLDEVVKYF-----NDP------------- 167 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 S + + +RIA++G+PNVGKS+LINRLLG R++ + G TRDS+ Sbjct: 168 ----------SEDEEDDEYIRIAMIGKPNVGKSSLINRLLGEERVIVSNVPGTTRDSIDS 217 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 ++ + DTAG+R+ S++ E +E+ +V ++ ++ + I+++DA +QD Sbjct: 218 YLETEDGKFILVDTAGLRRKSKVKEEIERYSVIRTYAAIEKADVAILVIDAEQGITEQDE 277 Query: 305 RIVDSVFNTGHAVVLALNKWDMVS--DKL--NLLQDLRTKAIKNLPQIGDIYINTISGRT 360 +I+ A+++ +NKWD++ DK N +DL+ K +K +P ++I+ + T Sbjct: 278 KIIGYAHEMNKAIMVVVNKWDLIEKDDKTLSNYQKDLQQK-LKFMPYAKYLFISAL---T 333 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G+ + ++ + + R++T LN + K L PP + + ++ Y TQ+ + P Sbjct: 334 GQRVHKILSTAKYCYDNYSKRVSTGLLNDVISKAVLMKEPPVVALKRLKIYYATQVATKP 393 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 P F+ F PN + SY RYL N+LR +F G I + +++ K Sbjct: 394 PKFVFFVNDPNLLHFSYGRYLENQLRESFDFDGTGIEIEYRARKE 438 >gi|15598994|ref|NP_252488.1| GTP-binding protein EngA [Pseudomonas aeruginosa PAO1] gi|107103319|ref|ZP_01367237.1| hypothetical protein PaerPA_01004388 [Pseudomonas aeruginosa PACS2] gi|152985588|ref|YP_001346699.1| GTP-binding protein EngA [Pseudomonas aeruginosa PA7] gi|254236703|ref|ZP_04930026.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] gi|254242490|ref|ZP_04935812.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] gi|313109217|ref|ZP_07795185.1| putative GTP-binding protein EngA [Pseudomonas aeruginosa 39016] gi|26006739|sp|Q9HXJ8|DER_PSEAE RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|166225840|sp|A6V0W4|DER_PSEA7 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|9949972|gb|AAG07186.1|AE004798_9 conserved hypothetical protein [Pseudomonas aeruginosa PAO1] gi|126168634|gb|EAZ54145.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] gi|126195868|gb|EAZ59931.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] gi|150960746|gb|ABR82771.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7] gi|310881687|gb|EFQ40281.1| putative GTP-binding protein EngA [Pseudomonas aeruginosa 39016] Length = 493 Score = 262 bits (670), Expect = 8e-68, Method: Compositional matrix adjust. Identities = 167/471 (35%), Positives = 256/471 (54%), Gaps = 10/471 (2%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ IA+VG PNVGKSTLFNRL K + A+V + G+TRDR YG+A G + ++DT GI Sbjct: 1 MVPVIALVGRPNVGKSTLFNRLTKSRDAIVAEYAGLTRDRQYGEARWQGRTYIVIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + G I +M +Q+ AI EA +LFL+DS+AG+T D I LRK+N +++NK Sbjct: 61 S-GDEEGIDAKMAEQSLQAIEEADAVLFLVDSRAGMTAADQMIAEHLRKRNKRSFLIANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +DT E L + + I+A H G + + IF + N E Sbjct: 120 VDTIDPDLARAEFSPLGLGDALPIAAAHGRGINHMLQEALGIFPKD--NAEEEGEGEPAS 177 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 E + E T S K+ ++IA++GRPNVGKSTL+NR+LG R++ Q+G TRD Sbjct: 178 EEVAEGEEPTRIPGPSEKD---GIKIAIIGRPNVGKSTLVNRMLGEERVIVYDQAGTTRD 234 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ I + + DTAG+R+ +I E++E+ +V K++Q+++ I ++DA Sbjct: 235 SIYIPFERNEEKYTLIDTAGVRRRGKIFEAVEKFSVVKTLQAIQDANVVIFVMDAREGVV 294 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWD-MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGR 359 + DL ++ V TG A+V+ALNKWD M + + + ++T+ + L + I+ IS Sbjct: 295 EHDLNLLGFVLETGRALVIALNKWDGMEAAERDY---VKTELERRLLFVDFADIHFISAL 351 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 G G+ L SV E + TR TS L S L+ + PP + R +L+Y ++ Sbjct: 352 HGTGVGHLYKSVQESFRSAVTRWPTSRLTSILEDAVQVHQPPMVNGRRIKLRYAHLGGAN 411 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 PP +I + +P++Y RYL R L G PIR+ ++ +NPY K Sbjct: 412 PPLIVIHGNQVDAVPKAYTRYLEKTYRRVLKLVGTPIRIEYKGGENPYEGK 462 >gi|289670462|ref|ZP_06491537.1| GTP-binding protein EngA [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 465 Score = 262 bits (670), Expect = 8e-68, Method: Compositional matrix adjust. Identities = 159/473 (33%), Positives = 250/473 (52%), Gaps = 33/473 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVI-FNIVDTAG 59 M+ +A+VG PNVGKST+FN L + + A+V + PG+TRDR YG ++ F +VDT G Sbjct: 1 MLPLVALVGRPNVGKSTIFNALTRTRDALVHDQPGVTRDRNYGVCRLDEQQPFIVVDTGG 60 Query: 60 IADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 IA G +A Q A EA L+LF++D + G + D I ++LRK P ++V N Sbjct: 61 IA-GDEEGLAGATARQARAAAGEADLVLFVVDGREGASSLDDEILAWLRKLARPTVLVIN 119 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNK 179 K+D + E F ++V +SA H G EL LE + Sbjct: 120 KIDGTDEETVRSEFARYGFSDVVALSAAHRQGIDEL----------------LEEV---- 159 Query: 180 RNEESPKENITSEGKSS-VKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 + EG + N +RIA VGRPNVGKSTL+NRLLG R++ G T Sbjct: 160 ------GARLPEEGSGELLDNDPARVRIAFVGRPNVGKSTLVNRLLGEERMIASEVPGTT 213 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RDS+++ + DTAG+R+ ++ E++E+ + K++Q++ C+ +++LDAT Sbjct: 214 RDSIAVDLERDGRQYRLIDTAGLRRRGKVEEAVEKFSAFKTLQAIEQCQVAVLMLDATEG 273 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSD-KLNLLQDLRTKAIKNLPQIGDIYINTIS 357 QD I+ ++ + G A+V+A+NKWD SD + +DL ++ + + + I+ + Sbjct: 274 VTDQDATILGAILDAGRALVVAINKWDGQSDYQRAQAEDLLSRKLGFVSWAEAVRISALH 333 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 G G+ +L ++ + +TS +N L+ NPPP+I ++L+Y+ Sbjct: 334 ---GSGMRELFQAIHRAHASATHEFSTSEVNQALEIAYETNPPPSIRGHVSKLRYVHPGG 390 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 ++PP+F++ T +PESYKRYL N R F L G P+R F+ NPY K Sbjct: 391 ANPPTFIVHGTRLKVLPESYKRYLENFFRKRFKLVGTPVRFIFREGANPYEGK 443 >gi|323489679|ref|ZP_08094906.1| GTP-binding protein Der [Planococcus donghaensis MPA1U2] gi|323396810|gb|EGA89629.1| GTP-binding protein Der [Planococcus donghaensis MPA1U2] Length = 436 Score = 262 bits (670), Expect = 8e-68, Method: Compositional matrix adjust. Identities = 145/459 (31%), Positives = 250/459 (54%), Gaps = 29/459 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 +AIVG PNVGKST+FNR+V +++++V + PG+TRDR+Y A FNI+DT GI D Sbjct: 5 VVAIVGRPNVGKSTIFNRVVGERVSIVEDIPGVTRDRIYSSADWLTHEFNIIDTGGI-DL 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 ++ +Q+ Q E+A++EA +I+FL++ + G+T D + L K P+I+ NK+D Sbjct: 64 RDEPFLEQIRQQAEIAMDEADVIIFLVNGRDGVTNQDEQVAKILYKTKKPVILAVNKIDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + Y+ Y+L E +S H LG +L + K F Q +EE Sbjct: 124 PDMRHMIYDFYTLGMGEPFPLSGSHGLGLGDLLDEVAKNFPQD-------------DDEE 170 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 P +N+ ++ +++GRPNVGKS+L+N LG R++ +G TRD++ Sbjct: 171 YP-DNV--------------IKFSLIGRPNVGKSSLVNSFLGEERVIVSEVAGTTRDAID 215 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + + P I DTAGMRK ++ E+ E+ +V ++++++ + +V+L+A ++QD Sbjct: 216 TQYEYNEQPYVIIDTAGMRKKGKVYETTEKYSVLRALRAIERSDVVLVVLNAEEGIQEQD 275 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 +I G AV++ +NKWD + + + K ++ + I +S +G+ Sbjct: 276 KKIAGYAHEAGKAVIIIVNKWDAIEKDEKTMNVMTRKIREHFLFLDYAPIMFVSAISGKR 335 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 + +++ V ++N RI +S LN ++ NP P+ R RL Y TQ+ PP+F Sbjct: 336 VHNILEIVNKVNDNHSRRIQSSILNEVIEDAVAMNPAPSDKGRRLRLYYATQVAIKPPTF 395 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 ++F P + SY+R+L NR+R +F G P+R+ ++ Sbjct: 396 VVFVNDPEMMHFSYERFLQNRIRESFDFEGTPLRLITRA 434 >gi|313896288|ref|ZP_07829841.1| ribosome biogenesis GTPase Der [Selenomonas sp. oral taxon 137 str. F0430] gi|312975087|gb|EFR40549.1| ribosome biogenesis GTPase Der [Selenomonas sp. oral taxon 137 str. F0430] Length = 441 Score = 262 bits (670), Expect = 8e-68, Method: Compositional matrix adjust. Identities = 151/466 (32%), Positives = 253/466 (54%), Gaps = 37/466 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTLFN++ KK++++V + PG+TRDR+Y A F I+DT GI + Sbjct: 6 VAVVGRPNVGKSTLFNQIGKKRISIVDDMPGVTRDRIYMDAEWLNHEFTIIDTGGIEFDE 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + I + M Q ELA+ EA +ILFL+D +AG+T D + LR+ N P+I+ NK+D+ Sbjct: 66 SDHILRSMRSQAELAMEEADVILFLVDGRAGLTASDEEVGRLLRRTNKPVILAVNKIDSF 125 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + Y+ Y+L + + ISA + + +L + +F + Sbjct: 126 ERENLIYDFYALGLGDPIPISASNAMNLGDLLDAVVAVFPR------------------- 166 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 + + + + IAVVGRPNVGKS+L+NRLLG R++ G TRD++ Sbjct: 167 ---------EEAEEREPDEIAIAVVGRPNVGKSSLVNRLLGEERVIVSDVPGTTRDAIDT 217 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + DTAGMR+ +IT +E+ +V +S++++ +++++A +QD Sbjct: 218 HFTRDGAKYLLIDTAGMRRKGKITLPVERYSVMRSLRAIDRAGVVLMVINAAEGILEQDT 277 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDK-----LNLLQDLRTKAIKNLPQIGDIYINTISGR 359 +I V +G V++ +NKWD+ +K L DLR + + L +Y + ++G+ Sbjct: 278 KIAGYVHESGKGVIIVVNKWDIFPEKNDKSTLRFTDDLREE-LGFLQYAPVLYTSALTGQ 336 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 E + +L+ V E + RI TS LN ++ NPPPT + ++ ++TQ+ Sbjct: 337 RVERVTELVKYVAEQQSM---RIKTSVLNELIRDAVSVNPPPTKKGKQLKILFMTQVGIV 393 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 PP+F+IF P+ + SY R++ NRLR +F G P+R+ ++ K Sbjct: 394 PPTFIIFVNDPDLMHFSYLRFIENRLRESFGFEGTPLRLVVRARKE 439 >gi|229592437|ref|YP_002874556.1| GTP-binding protein EngA [Pseudomonas fluorescens SBW25] gi|229364303|emb|CAY52040.1| GTP-binding protein [Pseudomonas fluorescens SBW25] Length = 493 Score = 262 bits (670), Expect = 8e-68, Method: Compositional matrix adjust. Identities = 160/472 (33%), Positives = 251/472 (53%), Gaps = 21/472 (4%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ IA+VG PNVGKSTLFNRL + + A+VG+ G+TRDR YG+A G + IVDT GI Sbjct: 5 MVPVIALVGRPNVGKSTLFNRLTRTRDAIVGDLSGLTRDRQYGEAKWQGRSYIIVDTGGI 64 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + G + ++M +Q+ LAI EA ++LFL+D++AG T D I LRK+N +V+NK Sbjct: 65 S-GDEHGMDEKMAEQSLLAIEEADVVLFLVDARAGYTAADQMIGEHLRKRNKRSYLVANK 123 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D ++ E + + + ++ H G +++ + F + Sbjct: 124 IDNIDPEQARAEFSPMGLGDAIPVAGAHGRGITQMLEIALSTFPKD-------------D 170 Query: 181 NEESPKENITSEGKSSVKNISKP-----LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQS 235 +EE E K I P ++IA++GRPNVGKSTL+NR+LG +R++ + Sbjct: 171 DEEEEGEEEIVAEGEEAKRIPGPSEKDGIKIAIIGRPNVGKSTLVNRMLGEDRVIVYDEP 230 Query: 236 GITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDA 295 G TRDS+ I + + + DTAG+RK +I E +E+ +V K++Q+++ I ++DA Sbjct: 231 GTTRDSIYIPFERNDEKYTLIDTAGVRKRGKIHEEVEKFSVVKTLQAIKDANVVIFVMDA 290 Query: 296 TIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINT 355 DL ++ G A+V+A+NKWD ++ + + + DI+ Sbjct: 291 REGVVDHDLNLLGFALEAGRALVIAINKWDGMTPSERDFVKIELQRRLFFVEFADIHF-- 348 Query: 356 ISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQ 415 IS G G+ +L SV K TR T+ L L+ ++ PP + NR +L+Y Sbjct: 349 ISALHGTGVGNLYASVQNSFKSAVTRWPTNRLTQILEDAVGEHAPPMVNNRRIKLRYAHL 408 Query: 416 IQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 ++PP +I K+P+SY RYL N R L G PIR+ F+ +NPY Sbjct: 409 GGANPPIIVIHGNQIEKVPKSYVRYLENTYRRVLKLVGTPIRIEFKGGENPY 460 >gi|170760623|ref|YP_001787836.1| GTP-binding protein EngA [Clostridium botulinum A3 str. Loch Maree] gi|238688523|sp|B1KX71|DER_CLOBM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|169407612|gb|ACA56023.1| ribosome-associated GTPase EngA [Clostridium botulinum A3 str. Loch Maree] Length = 439 Score = 262 bits (670), Expect = 8e-68, Method: Compositional matrix adjust. Identities = 148/460 (32%), Positives = 240/460 (52%), Gaps = 28/460 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFN+L K++A+V + PG+TRDR+Y +A F ++DT GI Sbjct: 6 VAIVGRPNVGKSTLFNKLAGKRIAIVQDTPGVTRDRIYAEAEWLNYKFTMIDTGGIEPES 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I QM Q ++AI A++I+FL+D K G+ P D + LRK P+++V NK+D Sbjct: 66 EDIIVSQMRRQAQIAIEMANVIIFLVDGKEGLAPADEEVAQMLRKSKKPVVLVVNKIDKL 125 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + N YE Y+L + V IS+ LG ++ + + FK Sbjct: 126 KDENNAYEFYNLGIGDPVTISSSQALGLGDMLDRVVEYFKD------------------- 166 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 S + + IA +G+PNVGKS+LIN+LLG RL+ G TRDS+ Sbjct: 167 ---------DESDGEDDERINIAFIGKPNVGKSSLINKLLGEERLIVSDIPGTTRDSIDS 217 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + + DTAG+R+ S++ E +E+ +V ++ S+ + I+++DA +QD Sbjct: 218 YVDTEFGEFTLIDTAGLRRKSKVKEEIERYSVIRTYASIERADVCILMIDAIEGISEQDQ 277 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 +I+ + A+++ +NKWD+V + + + NL + IS +TG+ + Sbjct: 278 KIIGYAHDINKAILVIVNKWDLVEKDDKTMDKFKKELKVNLSFMPYAKYLFISAKTGQRV 337 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 ++ + E + R+ T LN + + + PP + + ++ Y+TQI + PP+F+ Sbjct: 338 VKVLQTAKECYDNYTKRVKTGVLNDVISQAIMMKEPPIVGTKRLKIYYVTQIGTKPPTFI 397 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 F P I SY+RYL N+LR NF G I+ F+ K Sbjct: 398 FFVNDPACIHFSYQRYLENQLRENFDFQGTGIKTEFRERK 437 >gi|313497226|gb|ADR58592.1| EngA [Pseudomonas putida BIRD-1] Length = 487 Score = 262 bits (670), Expect = 8e-68, Method: Compositional matrix adjust. Identities = 160/475 (33%), Positives = 248/475 (52%), Gaps = 23/475 (4%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ IA+VG PNVGKST+FNRL K + A+VG+ G+TRDR YG A G F ++DT GI Sbjct: 1 MVPVIALVGRPNVGKSTMFNRLTKTRDAIVGDLSGLTRDRQYGDASWQGRSFILIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 G + ++M +Q+ +AI EA +LFL+D++AG+T D I LRK+N I+V+NK Sbjct: 61 T-GDEVGMDEKMAEQSLMAIEEADYVLFLVDARAGMTAADQMIAEHLRKRNKAAILVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D E + + ++ G + L + + + LE Sbjct: 120 IDNIDPDVARAEFSPMGMGNAIPVAGSQGRGINALMEAVLGHLPRDAEDEALE------- 172 Query: 181 NEESPKENITSEGKSSVKNISKP-----LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQS 235 +EG+ +V+ I P ++IA++GRPNVGKSTL+NR+LG R++ + Sbjct: 173 -------QDVAEGEEAVR-IPGPSEKDGIKIAIIGRPNVGKSTLVNRMLGEERVVVYDEP 224 Query: 236 GITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDA 295 G TRDS+ I + DTAG+RK +I E +E+ +V K++Q+++ I ++DA Sbjct: 225 GTTRDSIYIPFERDGEKYTFIDTAGVRKRGKIHEEVEKFSVVKTLQAIKDANVVIFVMDA 284 Query: 296 TIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINT 355 DL ++ G A+V+ALNKWD + ++T+ + L + I+ Sbjct: 285 REGVVDHDLNLLGFALEAGRAIVIALNKWDGMEPGERAY--VKTELERRLFFVDFADIHF 342 Query: 356 ISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQ 415 IS G G+ +L SV + TR TS L L+ ++ PP + R +L+Y Sbjct: 343 ISALHGTGVGNLYKSVQAAFQSAVTRWPTSRLTQILEDAVSEHQPPMVNGRRIKLRYAHL 402 Query: 416 IQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 ++PP +I + IP+SY RYL N R L G PIR+ ++ +NPY K Sbjct: 403 GGANPPLIVIHGNQTDSIPKSYSRYLENTYRRVLKLVGTPIRIEYKGGENPYEGK 457 >gi|295100402|emb|CBK97947.1| ribosome-associated GTPase EngA [Faecalibacterium prausnitzii L2-6] Length = 447 Score = 262 bits (670), Expect = 9e-68, Method: Compositional matrix adjust. Identities = 150/456 (32%), Positives = 241/456 (52%), Gaps = 31/456 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTLFN+L +++A+V + PGITRDR++ +G F +VDT GI Sbjct: 6 VAVVGRPNVGKSTLFNKLCGQRLAIVEDTPGITRDRIFANCEWSGHEFLLVDTGGIEPKA 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD-T 123 I M +Q ++AI+ A I+ ++D + G+T D + LR+ + PII+ NK D Sbjct: 66 TEGILAHMREQAQIAIDTADCIIMVVDVRNGLTAADEDVAHMLRRSHKPIILAVNKCDNV 125 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 YE Y+L F E++ IS+ H GT +L + L+ E + Sbjct: 126 GETPMELYEFYNLGFDEVMPISSVHGHGTGDLLDAVCA---------HLDFSETVVEEDR 176 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 P +A++GRPNVGKS+L NR+LG NR++ +++G TRD++ Sbjct: 177 IP--------------------VAIIGRPNVGKSSLTNRILGENRMIVANEAGTTRDAID 216 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + DTAG+RK S IT+ LE+ V +++ +V ++L+DAT+ F +QD Sbjct: 217 TPVDNAYGKFIFTDTAGLRKRSNITDGLERYMVVRALAAVERSRVALILVDATVGFTEQD 276 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDK-LNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 ++ + G A ++ +NKWD V K N ++ R + +G I IS +TG Sbjct: 277 SKVAGYAHDQGKACIIVVNKWDAVEGKETNTMELQRRGYAECFSFMGYAPIIFISAQTGY 336 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 ++ LM + +++ R+ T LN L + + PP+ R ++ Y+TQ + PP+ Sbjct: 337 NVNKLMQLIRDVDSQNGARVPTGVLNEMLARATARMQPPSDKGRRLKIFYLTQASTRPPT 396 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 F+ F + SY+RY+IN++R NF L PIR+ Sbjct: 397 FVAFVNAKHLFHFSYQRYIINQIRENFGLEHTPIRL 432 >gi|158320432|ref|YP_001512939.1| small GTP-binding protein [Alkaliphilus oremlandii OhILAs] gi|166920096|sp|A8MH56|DER_ALKOO RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|158140631|gb|ABW18943.1| small GTP-binding protein [Alkaliphilus oremlandii OhILAs] Length = 440 Score = 262 bits (669), Expect = 9e-68, Method: Compositional matrix adjust. Identities = 151/460 (32%), Positives = 248/460 (53%), Gaps = 32/460 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTLFN++ +++++V N PG+TRDR+Y +A F ++DT GI Sbjct: 6 VAVVGRPNVGKSTLFNKIAGERISIVENKPGVTRDRIYAEAEWLNYQFTLIDTGGIEPES 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I QM Q ELA+ A++I+F++D + G+T D + LRK P+I+ NK+DTR Sbjct: 66 EEIIPAQMRRQAELAMETANVIIFVVDGREGLTSVDRDVAELLRKTKKPVIVTLNKVDTR 125 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFK-QKYPNHPLEMIENNKRNEE 183 +FYE Y L + +EISA LG +L + K F + Y + ++I Sbjct: 126 HQSEHFYEFYELGMGDPIEISASLGLGIGDLLDEVVKNFNPEDYNQYDDDVI-------- 177 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 ++A++G+PNVGKS+LINR+LG R++ +G TRD++ Sbjct: 178 ---------------------KVAMIGKPNVGKSSLINRILGEERVIVSDIAGTTRDAID 216 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + + + DTAG+R+ SRITES+E+ ++ +++ +V + ++++DA+ +QD Sbjct: 217 TPFTDGDDRYVLIDTAGIRRKSRITESIEKYSIVRAIAAVEKSDVCLLVIDASEGVTEQD 276 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKN-LPQIGDIYINTISGRTGE 362 +I G +V+ +NKWD++ +K N + K I+N L I I +S TG+ Sbjct: 277 KKIAGYSHENGKGMVIVVNKWDII-EKDNHTMNEFIKEIRNELTYISYAPIVFVSALTGQ 335 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 ++ ++ V ++ RI T LN + + L N P+ + ++ Y TQ PP+ Sbjct: 336 RMNKILEEVKHVSNQNAMRIPTGALNEVIGEAILLNQAPSDKGKRLKVFYATQASVKPPT 395 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 F++F + SY RYL N++R NF G PIR + Sbjct: 396 FILFINDKELMHFSYLRYLENKIRENFGFEGTPIRFILRE 435 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 64/123 (52%), Gaps = 2/123 (1%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + +A++G PNVGKS+L NR++ ++ +V + G TRD + + ++DTAGI Sbjct: 176 VIKVAMIGKPNVGKSSLINRILGEERVIVSDIAGTTRDAIDTPFTDGDDRYVLIDTAGIR 235 Query: 62 DGKNC--SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 SI K + A+ ++ + L +ID+ G+T D I + + ++IV N Sbjct: 236 RKSRITESIEKYSIVRAIAAVEKSDVCLLVIDASEGVTEQDKKIAGYSHENGKGMVIVVN 295 Query: 120 KMD 122 K D Sbjct: 296 KWD 298 >gi|304414053|ref|ZP_07395421.1| GTP-binding protein [Candidatus Regiella insecticola LSR1] gi|304283267|gb|EFL91663.1| GTP-binding protein [Candidatus Regiella insecticola LSR1] Length = 491 Score = 262 bits (669), Expect = 9e-68, Method: Compositional matrix adjust. Identities = 157/477 (32%), Positives = 254/477 (53%), Gaps = 15/477 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI +A+VG PNVGKSTLFN L + + A+V + PG+TRDR YG+A F ++DT G+ Sbjct: 1 MIPVVALVGRPNVGKSTLFNHLTRTRSALVSDFPGLTRDRQYGRAEFESHEFIVIDTGGV 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + M Q LAI EA ++LF++D +AG+ P D IT LR + ++ NK Sbjct: 61 -DGTEQGVETLMASQALLAIEEADIVLFIVDGRAGMLPADQEITQHLRNRQKSTFLLVNK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 D + + YSL E+ I+A H G ++L + F P ++ + + Sbjct: 120 TDGINSDSAIADFYSLGLGEVYAIAASHGRGVAQLLERVMAPF---IPAKEPVVLTDEQL 176 Query: 181 N-------EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGS 233 N EE E E + +++ P+++A+VGRPNVGKSTL NR+LG R++ Sbjct: 177 NAAYWATQEEKNDETGLEEDNFNPQDL--PIKLAIVGRPNVGKSTLTNRILGEERVIVYD 234 Query: 234 QSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLL 293 G TRDS+ I + DTAG+RK ++T+++E+ +V K+++++ ++++ Sbjct: 235 LPGTTRDSIYIPMTRNERQYILIDTAGVRKRGKVTQTVEKFSVIKTLKAIEDSNVVLLVI 294 Query: 294 DATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYI 353 DA QDL ++ + N+G ++V+ +NKWD + + Q ++ + L I I Sbjct: 295 DAQDGISDQDLSLLGFILNSGRSLVIVINKWDGIQAEDR--QRVKNELDLRLNFIDFARI 352 Query: 354 NTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYI 413 + IS G+ +L SV E R+ TS L +Q + ++PP I R +LKY Sbjct: 353 HFISALRVSGVGNLFKSVCEAYDSSTKRVNTSLLTRIMQMAEEEHPPARIQGRRVKLKYA 412 Query: 414 TQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I + + ++YKRYL+N R + + G PIR+ F+ +NP+ K Sbjct: 413 HAGGYNPPIIVIHGNQVSSLTDAYKRYLMNYFRRSLKIIGTPIRIQFKEGENPFAGK 469 >gi|124267181|ref|YP_001021185.1| GTP-binding protein EngA [Methylibium petroleiphilum PM1] gi|166225824|sp|A2SHB1|DER_METPP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|124259956|gb|ABM94950.1| putative GTP-binding protein EngA [Methylibium petroleiphilum PM1] Length = 446 Score = 262 bits (669), Expect = 9e-68, Method: Compositional matrix adjust. Identities = 157/475 (33%), Positives = 244/475 (51%), Gaps = 36/475 (7%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +A+VG PNVGKSTLFNRL K + A+V + G+TRDR YG + F +VDT G Sbjct: 1 MKPVLALVGRPNVGKSTLFNRLTKSRDAIVADFAGLTRDRHYGDGRLGEREFIVVDTGGF 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 I K+M QT A+ E+ +++F++D +AG+T DH I +LR +++ +NK Sbjct: 61 EPTAESGIYKEMAKQTRQAVAESDVVIFVVDVRAGVTGQDHDIARYLRTAGKKVLLAANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + + E Y L E + +S+ H G L + + F P+ Sbjct: 121 AEGMLEGIQLAEFYELGMGEPLAVSSAHGQGIRSLLTAALEDFAFDEPD----------- 169 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 ++ + +P+R+AV GRPNVGKSTLIN LG RL+ G TRD Sbjct: 170 -------------DLALDDPERPIRLAVAGRPNVGKSTLINTWLGEERLVAFDLPGTTRD 216 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 ++S+ + E+ DTAG+R+ ++ ES+E+ +V K++Q++ ++LLDAT Sbjct: 217 AISVPFERNGQKFELIDTAGLRRKGKVFESIEKFSVVKTLQAIADANVVLLLLDATQGVT 276 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMV-SDKLNLLQ---DLRTKAIKNLPQIGDIYINTI 356 QD I + ++G AVVLA+NKWD V S + LLQ + R +K P + I Sbjct: 277 DQDAHIAGYILDSGRAVVLAVNKWDAVDSYQRELLQRSIEQRLAFLKFAP------VLHI 330 Query: 357 SGRTGEGLDDLMVSVLEINKLWKTRITTSYLNS-WLQKTQLQNPPPTIFNRYNRLKYITQ 415 S +GL + ++ + ++ T L L+ Q Q P R +L+Y Q Sbjct: 331 SAIKRQGLGPVWKAIADAWASATKKLATPVLTRVLLEAVQFQQPKRAGAFR-PKLRYAHQ 389 Query: 416 IQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I + ++YKR+L R R +F LSG P+R+ +SS+NP+ +K Sbjct: 390 GGQNPPVIVIHGNSLEHVTDAYKRFLEGRFRCHFQLSGTPMRIEMKSSRNPFAEK 444 >gi|145589468|ref|YP_001156065.1| small GTP-binding protein [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|189037153|sp|A4SYD7|DER_POLSQ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|145047874|gb|ABP34501.1| small GTP-binding protein [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 454 Score = 262 bits (669), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 159/473 (33%), Positives = 238/473 (50%), Gaps = 43/473 (9%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 I IVG PNVGKSTLFNRL + + A+V + G+TRDR YG+ I F VDT G Sbjct: 5 ITIVGRPNVGKSTLFNRLTRSRDALVADFSGLTRDRHYGKGRIGERAFICVDTGGFEPVA 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK---M 121 I +M QT+ A+ E+ +++FL+D + G+ P D I FLRK P+I+ NK M Sbjct: 65 KTGIVAEMAKQTKQAVAESDIVIFLVDGRLGMAPQDRVIADFLRKTGRPVILAVNKTEGM 124 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 + I +F+E L E IS+ H G L P+ E+ N Sbjct: 125 QSGIVTADFHE---LGLGEPFPISSAHGDGVKGLIDDALDSLGIAEPD------EDELAN 175 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 + ++P++IAVVGRPNVGKSTLIN+L+G R++ G TRD+ Sbjct: 176 DP-----------------NRPMKIAVVGRPNVGKSTLINKLIGEERVIAFDMPGTTRDA 218 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 + + + P + DTAG+R+ ++ E++E+ +V K++Q++ C I++LDA + Sbjct: 219 IEVPFERNGKPYILVDTAGLRRRGKVFEAIEKFSVVKTLQAIADCNVVILMLDAQQDISE 278 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVS------DKLNLLQDLRTKAIKNLPQIGDIYINT 355 QD I + G A+V+A+NKWD + +L + Q LR N ++ Sbjct: 279 QDAHIAGFIVEAGRALVVAVNKWDGLDAYVKERARLEIAQKLRFLDFAN--------VHP 330 Query: 356 ISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQ 415 IS + G GL DL V ++ T L LQ+ P + +L+Y Q Sbjct: 331 ISAKKGTGLKDLFKDVDAAYAAAMAKLPTPRLTRILQEAIEHQQPKRVGMGRPKLRYAHQ 390 Query: 416 IQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYI 468 +PP +I T + + +SYKRYL R R F L G P+R+ ++KNPY+ Sbjct: 391 GGMNPPIVVIHGTSLSGVTDSYKRYLEGRFRDVFKLRGTPLRIQMNTAKNPYV 443 >gi|21242765|ref|NP_642347.1| GTP-binding protein EngA [Xanthomonas axonopodis pv. citri str. 306] gi|325927625|ref|ZP_08188854.1| small GTP-binding protein domain/GTP-binding hypothetical protein [Xanthomonas perforans 91-118] gi|26006715|sp|Q8PKY6|DER_XANAC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|21108245|gb|AAM36883.1| GTP-binding protein [Xanthomonas axonopodis pv. citri str. 306] gi|325541992|gb|EGD13505.1| small GTP-binding protein domain/GTP-binding hypothetical protein [Xanthomonas perforans 91-118] Length = 465 Score = 262 bits (669), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 156/472 (33%), Positives = 251/472 (53%), Gaps = 31/472 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVI-FNIVDTAG 59 M+ +A+VG PNVGKST+FN L + + A+V + PG+TRDR YG ++ F +VDT G Sbjct: 1 MLPLVALVGRPNVGKSTIFNALTRTRDALVHDQPGVTRDRNYGVCRLDEQQPFIVVDTGG 60 Query: 60 IADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 IA G +A Q A EA L+LF++D + G + D I ++LRK P ++V N Sbjct: 61 IA-GDEEGLAGATARQARAAAGEADLVLFVVDGREGASSLDDEILAWLRKLARPTVLVIN 119 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNK 179 K+D + E F ++V +SA H G EL + ++ E+++N+ Sbjct: 120 KIDGTDEETVRSEFARYGFSDVVALSAAHRQGIDELLDEVGARLPEEGAG---ELLDNDP 176 Query: 180 RNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITR 239 +RIA VGRPNVGKSTL+NRLLG R++ G TR Sbjct: 177 AR----------------------VRIAFVGRPNVGKSTLVNRLLGEERMIASEVPGTTR 214 Query: 240 DSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPF 299 DS+++ + DTAG+R+ ++ E++E+ + K++Q++ C+ +++LDAT Sbjct: 215 DSIAVDLERDGRQYRLIDTAGLRRRGKVEEAVEKFSAFKTLQAIEQCQVAVLMLDATEGV 274 Query: 300 EKQDLRIVDSVFNTGHAVVLALNKWDMVSD-KLNLLQDLRTKAIKNLPQIGDIYINTISG 358 QD I+ ++ + G A+V+A+NKWD SD + +DL ++ + + + I+ + Sbjct: 275 TDQDATILGAILDAGRALVVAINKWDGQSDYQRAQAEDLLSRKLGFVNWAEAVRISALH- 333 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 G G+ +L ++ + +TS +N L+ NPPP+I ++L+Y+ + Sbjct: 334 --GSGMRELFQAIHRAHASATHEFSTSEVNQALEIAYETNPPPSIRGHVSKLRYVHPGGA 391 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP+F++ T +PESYKRYL N R F L G P+R F+ NPY K Sbjct: 392 NPPTFIVHGTRLKVLPESYKRYLENFFRKRFKLVGTPVRFIFREGANPYEGK 443 >gi|116051824|ref|YP_789333.1| GTP-binding protein EngA [Pseudomonas aeruginosa UCBPP-PA14] gi|122260971|sp|Q02RV3|DER_PSEAB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|115587045|gb|ABJ13060.1| putative GTP-binding protein EngA [Pseudomonas aeruginosa UCBPP-PA14] Length = 493 Score = 262 bits (669), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 167/471 (35%), Positives = 256/471 (54%), Gaps = 10/471 (2%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ IA+VG PNVGKSTLFNRL K + A+V + G+TRDR YG+A G + ++DT GI Sbjct: 1 MVPVIALVGRPNVGKSTLFNRLTKSRDAIVAEYAGLTRDRQYGEARWQGRTYIVIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + G I +M +Q+ AI EA +LFL+DS+AG+T D I LRK+N +++NK Sbjct: 61 S-GDEEGIDAKMAEQSLQAIEEADAVLFLVDSRAGMTAADQMIAEHLRKRNKRSFLIANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +DT E L + + I+A H G + + IF + N E Sbjct: 120 VDTIDPDLARAEFSPLGLGDALPIAAAHGRGINHMLQEALGIFPKD--NAEEEGEGEPAS 177 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 E + E T S K+ ++IA++GRPNVGKSTL+NR+LG R++ Q+G TRD Sbjct: 178 EEVAEGEEPTRIPGPSEKD---GIKIAIIGRPNVGKSTLVNRMLGEERVIVYDQAGTTRD 234 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ I + + DTAG+R+ +I E++E+ +V K++Q+++ I ++DA Sbjct: 235 SIYIPFERNEEMYTLIDTAGVRRRGKIFEAVEKFSVVKTLQAIQDANVVIFVMDAREGVV 294 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWD-MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGR 359 + DL ++ V TG A+V+ALNKWD M + + + ++T+ + L + I+ IS Sbjct: 295 EHDLNLLGFVLETGRALVIALNKWDGMEAAERDY---VKTELERRLLFVDFADIHFISAL 351 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 G G+ L SV E + TR TS L S L+ + PP + R +L+Y ++ Sbjct: 352 HGTGVGHLYKSVQESFRSAVTRWPTSRLTSILEDAVQVHQPPMVNGRRIKLRYAHLGGAN 411 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 PP +I + +P++Y RYL R L G PIR+ ++ +NPY K Sbjct: 412 PPLIVIHGNQVDAVPKAYTRYLEKTYRRVLKLVGTPIRIEYKGGENPYEGK 462 >gi|297181616|gb|ADI17800.1| predicted GTPases [uncultured Sphingobacteriales bacterium HF0130_33B19] Length = 434 Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 152/457 (33%), Positives = 244/457 (53%), Gaps = 29/457 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST+FNR + + A+ G+TRDR YG+A NG F+++DT G G Sbjct: 5 VAIVGRPNVGKSTIFNRFTESRQAITDEVSGVTRDRHYGKAEWNGREFSVIDTGGYIKGS 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + ++ Q ELAI EA++ILFL+D KAGIT D + LR+ N +++ NK+D Sbjct: 65 DDVFEVEIRKQVELAIEEANVILFLVDVKAGITDLDQEVVKLLRRSNKKVVLAVNKVDNS 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + E Y+L + I++ GT EL + + F++ ++M E++ Sbjct: 125 KLLDDAVEFYNLGLGDYFPIASISGSGTGELLDELLRHFEED-----IKMQEDD-----I 174 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 PK A++GRPNVGKS++IN L+G + + +G TRDS++I Sbjct: 175 PK-------------------FAIIGRPNVGKSSIINTLIGKEQNIVTDIAGTTRDSLNI 215 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + DTAG+RK + E+LE +V +S++++ + I ++DA FE QD Sbjct: 216 RYTQFGFDFSLVDTAGVRKKKNVHENLEFYSVMRSIRAIEHSDVCIHIIDAERGFEAQDQ 275 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 RI +V+ +NKWD+V + + + K + D+ I +S + L Sbjct: 276 RIFHIADRNKKGIVILVNKWDLVDKSHETAKKMEEQIKKKIAPFSDVPIVFVSALEKQRL 335 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 + + +++ K +I+TS LN + PPP I +Y ++KY TQ+ S P+F+ Sbjct: 336 LKGLETAIQVYKNRIQKISTSVLNQLMLPLIEDVPPPAIKGKYIKIKYCTQLPISTPTFV 395 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 F P I E YKRY+ N+LR NF+ +G+PI++ F+ Sbjct: 396 FFANLPQYIKEPYKRYIENKLRDNFNFTGVPIQIYFR 432 >gi|256375751|ref|YP_003099411.1| GTP-binding protein EngA [Actinosynnema mirum DSM 43827] gi|255920054|gb|ACU35565.1| small GTP-binding protein [Actinosynnema mirum DSM 43827] Length = 471 Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 151/461 (32%), Positives = 236/461 (51%), Gaps = 38/461 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI---A 61 +AIVG PNVGKSTL NR++ ++ AVV + PG+TRDR+ A+ NG F +VDT G A Sbjct: 34 LAIVGRPNVGKSTLVNRIIGRREAVVQDVPGVTRDRVAYDALWNGRKFTVVDTGGWEPDA 93 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 G S+A Q ELA+ A +L ++D+ G T D A+ LR+ P+++V+NK+ Sbjct: 94 TGMMASVAAQ----AELAMQTADAVLLVVDASVGATTTDEAVAKVLRRSKAPVLLVANKV 149 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D ++SL E + +S H G+ ++ I ++ Sbjct: 150 DDERLMAEVASLWSLGLGEPMPVSGLHGRGSGDVLDKILEVLP----------------- 192 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 E+P++ + N P R+A+VGRPNVGKS+L+NRL G NR + S +G T D Sbjct: 193 -ETPRDTFGA-------NTGGPRRVALVGRPNVGKSSLLNRLTGENRSVVDSVAGTTVDP 244 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 V + DTAG+RK E ++ ++ + E +VLLDA P + Sbjct: 245 VDSLVELDDEVWRFVDTAGLRKRVNFASGAEYYASLRTKAAIESAEVAVVLLDAGEPISE 304 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMV-SDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 QDLR++ V +G A VLA NKWD+V D+ N + + + +P + I+ ++GR+ Sbjct: 305 QDLRVLTMVVESGRACVLAFNKWDLVDEDRRNAMVRELERGLVRVPWAERVNISALTGRS 364 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 + + + L+ W TR+ T LNSWL PPP + ++ + TQ + P Sbjct: 365 VRKIAPALRTALDS---WDTRVPTGRLNSWLTDLIAATPPPVRGGKQPKVLFATQAATRP 421 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 P+F++F T + Y+RY+ +LR F G P+R+ + Sbjct: 422 PTFVLFTT--GFLEAGYRRYIERKLREEFGFEGSPVRVSVR 460 >gi|90417497|ref|ZP_01225420.1| hypothetical protein GB2207_07462 [marine gamma proteobacterium HTCC2207] gi|90330738|gb|EAS46017.1| hypothetical protein GB2207_07462 [marine gamma proteobacterium HTCC2207] Length = 467 Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 152/472 (32%), Positives = 249/472 (52%), Gaps = 34/472 (7%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI IA+VG PNVGKSTLFNRL + + A+V N+ G+TRDR YG ++ F ++DT GI Sbjct: 1 MIPVIALVGRPNVGKSTLFNRLTRSRDALVANYSGLTRDRKYGDGEMHDRRFMVIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + G+ I M +Q+ LA++EA ++LF++D ++GI DH I LRKKN + +V+NK Sbjct: 61 S-GEEEGIDVGMAEQSLLAMDEADIVLFIVDCRSGIIAADHMIAETLRKKNRKVYLVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D + Y L F + +A H G + + + YP Sbjct: 120 IDGLDPAAALADFYQLGFSGMFPTTATHGRGVRSMMEELL----EPYP------------ 163 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 E + +N G +RI VVGRPNVGKSTL+NRLLG +R++ ++G TRD Sbjct: 164 -EYAEPDNSGLNG----------IRIGVVGRPNVGKSTLVNRLLGEDRVVVYDEAGTTRD 212 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 SV I + + DTAG+RK I ++E+ ++ K++Q++ ++++DA Sbjct: 213 SVYIDYERHGKKYTLIDTAGIRKRKNIKLAIEKFSIVKTLQAIDDANVVVLMVDAHEGLV 272 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMV--SDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 +QDL ++ SV + G +V+ +NKWD + + + +D++ + + D++ IS Sbjct: 273 EQDLHLMGSVIDAGRGLVIGVNKWDGLEPEKREKIKEDIKRRL--RFAEFADVHY--ISA 328 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 G G+ +L S+ + ++ S L L+ ++ PP + R +L++ Sbjct: 329 MHGTGVGNLYDSIENAYRAATDALSASRLTKVLEGAVEEHQPPLVHGRRIKLRFAHAGGR 388 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP ++ + +P Y RYL R L G P+R+ F++S+NPY K Sbjct: 389 NPPVIIVHGNQTDSVPAQYTRYLEKIFRRELGLHGTPVRVEFRTSENPYSTK 440 >gi|294625013|ref|ZP_06703663.1| GTP-binding protein EngA [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294666614|ref|ZP_06731853.1| GTP-binding protein EngA [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292600688|gb|EFF44775.1| GTP-binding protein EngA [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292603634|gb|EFF47046.1| GTP-binding protein EngA [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 465 Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 156/472 (33%), Positives = 251/472 (53%), Gaps = 31/472 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVI-FNIVDTAG 59 M+ +A+VG PNVGKST+FN L + + A+V + PG+TRDR YG ++ F +VDT G Sbjct: 1 MLPLVALVGRPNVGKSTIFNALTRTRDALVHDQPGVTRDRNYGVCRLDEQQPFIVVDTGG 60 Query: 60 IADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 IA G +A Q A EA L+LF++D + G + D I ++LRK P ++V N Sbjct: 61 IA-GDEEGLAGATARQARAAAGEADLVLFVVDGREGASSLDDEILAWLRKLARPTVLVIN 119 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNK 179 K+D + E F ++V +SA H G EL + ++ E+++N+ Sbjct: 120 KIDGTDEETVRSEFARYGFSDVVALSAAHRQGIDELLDEVGARLPEEGAG---ELLDNDP 176 Query: 180 RNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITR 239 +RIA VGRPNVGKSTL+NRLLG R++ G TR Sbjct: 177 AR----------------------VRIAFVGRPNVGKSTLVNRLLGEERMIASEVPGTTR 214 Query: 240 DSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPF 299 DS+++ + DTAG+R+ ++ E++E+ + K++Q++ C+ +++LDAT Sbjct: 215 DSIAVDLERDGRQYRLIDTAGLRRRGKVEEAVEKFSAFKTLQAIEQCQVAVLMLDATEGV 274 Query: 300 EKQDLRIVDSVFNTGHAVVLALNKWDMVSD-KLNLLQDLRTKAIKNLPQIGDIYINTISG 358 QD I+ ++ + G A+V+A+NKWD SD + +DL ++ + + + I+ + Sbjct: 275 TDQDATILGAILDAGRALVVAINKWDGQSDYQRAQAEDLLSRKLGFVNWAEAVRISALH- 333 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 G G+ +L ++ + +TS +N L+ NPPP+I ++L+Y+ + Sbjct: 334 --GSGMRELFHAIHRAHASATHEFSTSEVNQALEIAYETNPPPSIRGHVSKLRYVHPGGA 391 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP+F++ T +PESYKRYL N R F L G P+R F+ NPY K Sbjct: 392 NPPTFIVHGTRLKVLPESYKRYLENFFRKRFKLVGTPVRFIFREGANPYEGK 443 >gi|90021085|ref|YP_526912.1| GTP-binding protein EngA [Saccharophagus degradans 2-40] gi|123396308|sp|Q21KS9|DER_SACD2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|89950685|gb|ABD80700.1| Small GTP-binding protein domain [Saccharophagus degradans 2-40] Length = 471 Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 160/477 (33%), Positives = 253/477 (53%), Gaps = 43/477 (9%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI T+A+VG PNVGKSTLFNRL + + A+V N G+TRDR YG+A F +VDT GI Sbjct: 1 MIPTLALVGRPNVGKSTLFNRLTRSRDAIVANFSGLTRDRQYGEATHGDKRFIVVDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + G+ I M Q+ AI EA ++ F++D++ G+T D I LR N PI +++NK Sbjct: 61 S-GEEEGIDSYMAGQSLQAIEEADMVAFIVDARVGLTAADMQIAQHLRTCNKPIFLLANK 119 Query: 121 MD---TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 +D I F+E L +++ I+A H + + + Sbjct: 120 VDGVNESIVCAPFFE---LGLGDVIGIAAAHGRNINTMLDTVL----------------- 159 Query: 178 NKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGI 237 EN+ E ++S ++ +K +++A+VGRPNVGKSTL+NR+LG +R++ G Sbjct: 160 ---------ENVEPEAEASEEDKAKGIKLAIVGRPNVGKSTLVNRMLGEDRVVVYDMPGT 210 Query: 238 TRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATI 297 TRDS+ I + I DTAG+R+ I S+E+ ++ K++Q++ I+++DA Sbjct: 211 TRDSIYIEYERDGKAYTIIDTAGVRRRKNIKLSVEKFSIVKTLQAIDDANVVILVMDAQE 270 Query: 298 PFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQD----LRTKAIKNLPQIGDIYI 353 QDL ++ V ++G A+V+ALNKWD NL D ++T+ + L + + Sbjct: 271 GIVDQDLHLMGHVIDSGRALVVALNKWD------NLDNDHKSYVKTELSRRLQFVDFADL 324 Query: 354 NTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYI 413 + IS G G+ DL SV + ++ T++L L+ Q+ PP + R +L+Y Sbjct: 325 HFISALHGTGVGDLYKSVHKAYSSATEKLNTNFLTKILEFAVSQHQPPLVNGRRIKLRYA 384 Query: 414 TQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I +P++Y RYL R L G PIR F+SS+NP+ + Sbjct: 385 HAGGQNPPIIVIHGNQTAAVPKNYVRYLEKIFRKELELHGTPIRFEFKSSENPFAGR 441 >gi|172057814|ref|YP_001814274.1| GTP-binding protein EngA [Exiguobacterium sibiricum 255-15] gi|171990335|gb|ACB61257.1| small GTP-binding protein [Exiguobacterium sibiricum 255-15] Length = 436 Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 147/458 (32%), Positives = 243/458 (53%), Gaps = 29/458 (6%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 I +AIVG PN+GKST+FNR++ ++++V + PG+TRDR+YG F+++DT GI Sbjct: 3 IPVVAIVGRPNIGKSTIFNRVIGDRVSIVEDKPGVTRDRIYGTGEWLNRHFHLIDTGGIE 62 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 G + + + M Q ELAI+EA +I+F+++ + GIT D + + L + N P+++ NK+ Sbjct: 63 VG-DEPLLQMMRHQAELAIDEADVIIFMVNGREGITAADEEVANMLFRSNKPVVVAVNKV 121 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D + YE YSL F ++ IS H LG ++ + ++ K E+ + + Sbjct: 122 DNFEMRDLMYEFYSLGFGDLYPISGTHGLGLGDMLDRVLELAPDK---------EDIEYD 172 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 E++ ++ A+VGRPNVGKS++ N +LG R++ S +G TRD+ Sbjct: 173 EDT-------------------IKFALVGRPNVGKSSMTNSILGEERVIVSSIAGTTRDA 213 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 + ++ I DTAGMRK ++ ES E+ +V ++ +++ + V+LD + Sbjct: 214 IDTPFSRDEQEYVIIDTAGMRKRGKVYESTERFSVMRAQKAIERADVVCVVLDGEEGIIE 273 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTG 361 QD ++ G A+V+ +NKWD V ++ + + + + I +S +T Sbjct: 274 QDKKVAGYAHEAGRAIVIVVNKWDAVEKDDKTMKKMEEEIREEFRFLDYAPIVFVSAKTK 333 Query: 362 EGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 L L+ + + K RI TS LN + NP PT R+ Y TQ+ S PP Sbjct: 334 RRLQTLLPVIKQAAKSHAQRIQTSVLNDVIVDAVAMNPAPTDKGVRLRINYATQVASRPP 393 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 +F++F P + SYKRYL NR+R F +G PIR+ Sbjct: 394 TFVLFVNDPELLHFSYKRYLDNRIREAFDFTGTPIRIL 431 >gi|296113385|ref|YP_003627323.1| GTP-binding protein EngA [Moraxella catarrhalis RH4] gi|295921079|gb|ADG61430.1| GTP-binding protein EngA [Moraxella catarrhalis RH4] gi|326559230|gb|EGE09661.1| GTP-binding protein EngA [Moraxella catarrhalis 46P47B1] gi|326559869|gb|EGE10269.1| GTP-binding protein EngA [Moraxella catarrhalis 7169] gi|326569645|gb|EGE19697.1| GTP-binding protein EngA [Moraxella catarrhalis BC1] gi|326570126|gb|EGE20171.1| GTP-binding protein EngA [Moraxella catarrhalis BC8] gi|326570864|gb|EGE20888.1| GTP-binding protein EngA [Moraxella catarrhalis BC7] gi|326574414|gb|EGE24356.1| GTP-binding protein EngA [Moraxella catarrhalis 101P30B1] gi|326576405|gb|EGE26314.1| GTP-binding protein EngA [Moraxella catarrhalis O35E] Length = 472 Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 154/469 (32%), Positives = 256/469 (54%), Gaps = 34/469 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA--D 62 +A++G PNVGKSTLFN+L K + A+V + G+TRDR YG A F +VDT GI D Sbjct: 7 VALIGRPNVGKSTLFNQLTKSRQALVADLAGLTRDRQYGDAHFENKSFIVVDTGGIGEMD 66 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + +I M Q+ AI+EA +++F++D++AG+ D I FL P+ +V+NKMD Sbjct: 67 DGSGNIDDYMATQSYTAIHEADIVVFVVDARAGLIGADSEIAHFLHTLGKPVFLVANKMD 126 Query: 123 TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 + + + E ++L F E +A H G + L LE + + E Sbjct: 127 G-VHEAAYAEFFALGFGEPYATAASHGRGVTNL----------------LESLTADM-PE 168 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 + PK+ + S K L++A++GRPNVGKSTL+NRLLG +R++ G TRDS+ Sbjct: 169 DMPKDELDS----------KTLKLAIIGRPNVGKSTLVNRLLGEDRVVVFDMPGTTRDSI 218 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 I + + + DTAG+R+ RI E +E+ +V K++Q+++ ++++DA Q Sbjct: 219 YIPFEREGRSYVLIDTAGVRRRGRIDEKVEKFSVVKTLQAIKDANVVVLVIDAKEGIVDQ 278 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVS-DKLNLLQDLRTKAIKNLPQIGDIYINTISGRTG 361 DL ++ + G A+V+A+NKWD +S D+ + ++ + +P + I+ IS G Sbjct: 279 DLHMLGYALDAGRAIVVAINKWDGLSQDQKDFVKIEIDRRFNFVPW---VKIHLISALYG 335 Query: 362 EGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 G+ L S+ + + +++T+ L L+ +PPP + R +L+Y +PP Sbjct: 336 NGVGKLYPSIHKAYEASMFKVSTNQLTRILEDAVASHPPPMVGGRRIKLRYAHLGGHNPP 395 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +I + +P+SY+RYL N R + L G P+++ F+ + NPY K Sbjct: 396 VIVIHGNQTSSLPKSYQRYLENVFRNVYKLEGTPLQVEFKQNANPYEGK 444 >gi|255525663|ref|ZP_05392596.1| small GTP-binding protein [Clostridium carboxidivorans P7] gi|296185422|ref|ZP_06853832.1| ribosome-associated GTPase EngA [Clostridium carboxidivorans P7] gi|255510649|gb|EET86956.1| small GTP-binding protein [Clostridium carboxidivorans P7] gi|296050256|gb|EFG89680.1| ribosome-associated GTPase EngA [Clostridium carboxidivorans P7] Length = 438 Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 145/460 (31%), Positives = 241/460 (52%), Gaps = 28/460 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFN++ K++++V + PG+TRDR+Y +A F I+DT GI Sbjct: 6 VAIVGRPNVGKSTLFNKMAGKRISIVQDTPGVTRDRIYAEAEWLKYNFTIIDTGGIEPEN 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + I QM Q +A+ A++I+F++D K G+T D + LRK P+++V NK+D+ Sbjct: 66 SDIIISQMRRQATMAVETANVIVFIVDGKQGLTDADKEVAQMLRKSKKPVVLVVNKIDSL 125 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + N YE Y+L E + ISA LG ++ + F Sbjct: 126 KDEDNAYEFYNLGIGEPIAISASQALGLGDMLDKVVSYFDD------------------- 166 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 + ++IA VG+PNVGKS+LIN+LLG +R++ G TRD++ Sbjct: 167 ---------DKLDDEDDEYIKIAFVGKPNVGKSSLINKLLGEDRVIVSEIPGTTRDAIDS 217 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + DTAG+R+ S++ E +E+ +V ++ ++ + I++LDAT QD Sbjct: 218 YLETEQGKFTLIDTAGLRRKSKVKEEIERYSVIRTYTAIERADVCILMLDATHGITDQDE 277 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 +I+ A+++ +NKWD+V N + + + NL + IS +TG+ + Sbjct: 278 KIIGYAHEMSKAIMVIVNKWDLVEKDTNTMNAFKKQIGMNLSFMSYAPYLFISAKTGQRV 337 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 ++ V E + +I T LN + K + PP + + ++ Y+TQI + P+F+ Sbjct: 338 QKVLDMVKECYSNYSKKIKTGVLNDVISKAVMMKEPPIVGTKRLKIYYVTQIGTKAPTFV 397 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 F P+ I SY+RY+ N+LR NF +G I++ F+ K Sbjct: 398 FFVNDPSCIHFSYERYIENQLRENFDFTGTGIKLQFRERK 437 >gi|239631541|ref|ZP_04674572.1| GTP-binding protein EngA [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239526006|gb|EEQ65007.1| GTP-binding protein EngA [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 435 Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 141/461 (30%), Positives = 248/461 (53%), Gaps = 30/461 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AIVG PNVGKST+FNR++ +++++V + PG+TRDR+YG + G F ++DT GI G Sbjct: 5 TLAIVGRPNVGKSTIFNRILGERVSIVEDTPGVTRDRIYGTSEWLGKEFAVIDTGGIDLG 64 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 +A Q+ DQ E+AI+EA +ILFL D ++G+T D + L + P+++ NK+D Sbjct: 65 DEPFLA-QIKDQAEIAIDEADVILFLADIESGVTDADERVAQILYRAKKPVVLAVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 +++ Y+ YSL F E +S H +G ++ + F Sbjct: 124 PERRQDIYDFYSLGFGEPYPLSGTHGIGLGDVLDAVLAAF-------------------- 163 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 P E+ + E S ++ +++GRPNVGKS+L+N +LG NR++ G TRD++ Sbjct: 164 -PSEDKSVEDDS--------IKFSLIGRPNVGKSSLVNAILGENRVIVSPIEGTTRDAID 214 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + + + DTAG+RK ++ E+ E+ V ++++++ + + +++A +QD Sbjct: 215 TKFEAVDETFTMIDTAGIRKRGKVYENTEKYAVMRALRAIDRSDVVLFVINAEEGIREQD 274 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 ++ G +++ +NKWD V + ++D + + I +S +T + Sbjct: 275 KKVAGYSHEAGRGIIIVVNKWDTVEKDNHTMKDFENLIRQEFQYLDYAPIIFVSAKTKQR 334 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 L L ++ +++ RI +S LN L P PT+ + R+ Y+TQ+ PP+F Sbjct: 335 LQSLPAMIVAVSENQTRRIQSSVLNDVLMDAITVTPTPTVNGKRLRIYYMTQVAVKPPTF 394 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 ++F P+ + SY+R+LIN+LR F SG PI + + K Sbjct: 395 VVFVNDPDLLHFSYERFLINQLRQAFDFSGTPIHIIARKRK 435 >gi|310659189|ref|YP_003936910.1| GTPase involved in ribosome synthesis and maintenance [Clostridium sticklandii DSM 519] gi|308825967|emb|CBH22005.1| GTPase involved in ribosome synthesis and maintenance [Clostridium sticklandii] Length = 438 Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 147/454 (32%), Positives = 243/454 (53%), Gaps = 28/454 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNR+ +++A+V + PG+TRDR+Y QA F I+DT GI Sbjct: 5 VAIVGRPNVGKSTLFNRIAGERIAIVEDTPGVTRDRIYAQAEWVSKHFTIIDTGGIEPDS 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I K+M Q ELA++ A +ILF++D KAG+TP D + L K P+++V NK+D + Sbjct: 65 EELIPKKMRQQAELAMDMAQVILFVVDGKAGLTPSDRDVALMLLKTKKPVLLVVNKVDNK 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 +FY+ Y L F E + +S+ LGT +L + K F Q Sbjct: 125 NLPDDFYDFYELGFGEPIPVSSSIGLGTGDLLDEVVKNFPQ------------------- 165 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 ++ +E V +++A+VG+PN GKS+++NRL+G R++ +G TRD++ Sbjct: 166 ---DMDTELDEDV------VKVAIVGKPNAGKSSILNRLIGEERVIVSPIAGTTRDAIDT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 DTAG+R+ S++ E++E+ +V ++ SV + + ++DAT +QD Sbjct: 217 YIEMDGKKYLFIDTAGIRRKSKVYENIEKYSVIRAYASVEKADVVLTVIDATEGISEQDS 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 +I + G A ++ +NKWD++ + +++ K + LP + I +S T + + Sbjct: 277 KIAGLAHDAGKASIVVVNKWDLIEKDNHSVKEYTKKIREELPFMQYCPILFVSALTSQRM 336 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 + +V I R+ T LN + + + N PP+ + ++ Y TQ+ PP+F Sbjct: 337 GKIKETVDFIFDEASKRVATGVLNDVIGEAVMMNQPPSDKGKRLKIYYATQVGVRPPTFA 396 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 IF SY+RY+ N+LR NF G P+++ Sbjct: 397 IFVNEKELFHFSYQRYIENKLRENFGYEGTPLKI 430 Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 62/123 (50%), Gaps = 2/123 (1%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + +AIVG PN GKS++ NRL+ ++ +V G TRD + ++G + +DTAGI Sbjct: 175 VVKVAIVGKPNAGKSSILNRLIGEERVIVSPIAGTTRDAIDTYIEMDGKKYLFIDTAGIR 234 Query: 62 DGKNC--SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 +I K + ++ +A ++L +ID+ GI+ D I I+V N Sbjct: 235 RKSKVYENIEKYSVIRAYASVEKADVVLTVIDATEGISEQDSKIAGLAHDAGKASIVVVN 294 Query: 120 KMD 122 K D Sbjct: 295 KWD 297 >gi|303232074|ref|ZP_07318777.1| ribosome-associated GTPase EngA [Veillonella atypica ACS-049-V-Sch6] gi|302513180|gb|EFL55219.1| ribosome-associated GTPase EngA [Veillonella atypica ACS-049-V-Sch6] Length = 444 Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 159/467 (34%), Positives = 251/467 (53%), Gaps = 40/467 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTLFN +V K++++V + PG+TRDR+Y A F ++DT GI Sbjct: 6 VAVVGRPNVGKSTLFNAIVNKRISIVEDIPGVTRDRIYFDAEWLNREFTMIDTGGIEFVT 65 Query: 65 NCS--IAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 S I K M Q ELAI EA +ILF++D K GI P D + + LR P+++V NK+D Sbjct: 66 ENSHVIPKMMRLQAELAIEEADVILFVVDGKQGIVPADEEVANILRTSGKPVVLVVNKID 125 Query: 123 TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 + + N YE Y+L + + ISA++ + +L K F + N E Sbjct: 126 SVNQESNIYEFYNLGLGDPIGISAKNLMNLGDLLDDTVKHFPP---------VGTNVDEE 176 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 ++ + +A++GRPNVGKS+L N LLG +R++ +G TRDS+ Sbjct: 177 DT-------------------IHVAIIGRPNVGKSSLTNALLGQDRVIVSDVAGTTRDSI 217 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 W + + DTAGMR+ S+I E++E+ ++ +S++SV + +++LD +Q Sbjct: 218 DTHWTHGDQKFVLIDTAGMRRKSKIDEAVERYSIVRSLRSVDRSDIVVLVLDGVDGVTEQ 277 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMV--SDK--LNLLQDLRTKAIKNLPQIGDI-YINTIS 357 D +I + G V++ +NKWD+V DK L +D+ + Q I + + ++ Sbjct: 278 DKKIAGYAYEAGKGVIIVVNKWDLVEKDDKTTLRYTEDIYDEL--GFLQFAPILFASALT 335 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 + L D++ V E + ++ R++T LN LQ Q NP P+ R ++ Y+TQ Sbjct: 336 KQRIHRLADMLKFVSE--QQYR-RVSTGTLNQLLQDAQTVNPVPSRNGRIPKIYYMTQAS 392 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 PP+F++F P I SY R+L NRLR +F G PIR+ + K Sbjct: 393 VKPPTFILFVNEPELIHFSYMRFLENRLRESFGFEGTPIRLILRGKK 439 >gi|114778238|ref|ZP_01453110.1| GTP-binding protein EngA [Mariprofundus ferrooxydans PV-1] gi|114551485|gb|EAU54040.1| GTP-binding protein EngA [Mariprofundus ferrooxydans PV-1] Length = 456 Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 154/469 (32%), Positives = 251/469 (53%), Gaps = 37/469 (7%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AIVG PNVGKSTLFNRL+ + A+VG+ PG+T DRL + ++ +VDT GI +G + Sbjct: 18 AIVGRPNVGKSTLFNRLIGVRKAIVGDRPGVTVDRLESEFMLGDRHVILVDTGGIGEGTH 77 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 + ++ Q + A+ A +++F +D+++G T D I LR++ +P+++V NK + Sbjct: 78 DIMQPAIDIQVDAALEIADIVIFTVDAQSGATGVDAVIADKLRRQGMPLLLVVNKAEREN 137 Query: 126 AQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEESP 185 + +F Y L E + +SA H G EL + ++ + + LE EE P Sbjct: 138 SATDF---YGLGLGEPLPVSAIHGQGMPELLDALAELLPEMPDDQALE-------EEEKP 187 Query: 186 KENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSIS 245 N IAV+GRPNVGKSTLIN LG +R++ +G TRD++ Sbjct: 188 LAN-----------------IAVIGRPNVGKSTLINAWLGRDRMVVSEIAGTTRDAIDSM 230 Query: 246 WNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLR 305 +++ + + DTAG RK RI++ +E K++Q+ R + ++LLD +QD+R Sbjct: 231 LPFQDGFVRLVDTAGQRKHGRISDVIEFVARVKAVQAFRMADVAVMLLDGAEGIVEQDMR 290 Query: 306 IVDSVFNTGHAVVLALNKWDMVSDK----LNLLQDLRTKAIKNLPQIGDIYINTISGRTG 361 ++ + G A+++A+NK D++S++ + R + + ++P + ++ + G Sbjct: 291 LMQLAQDEGCALIVAVNKLDLLSEQEWKYFAERLNFRMRGMTDIP------VYRVTAKQG 344 Query: 362 EGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 +G+ L+ ++ + I T LN WL TQ + P+ R+KY +Q ++PP Sbjct: 345 KGVKQLLHEAVKASVRNHFTIGTGELNRWLGDTQEAHHAPSDDGSMVRMKYASQTGTNPP 404 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 SF IFC P K+ +YKRYL R F LSG+PIR F NPY K Sbjct: 405 SFKIFCNRPGKLKPTYKRYLEQAFRKTFDLSGVPIRFSFVGGTNPYADK 453 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 39/140 (27%), Positives = 60/140 (42%), Gaps = 2/140 (1%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + IA++G PNVGKSTL N + + VV G TRD + +VDTAG Sbjct: 188 LANIAVIGRPNVGKSTLINAWLGRDRMVVSEIAGTTRDAIDSMLPFQDGFVRLVDTAGQR 247 Query: 62 DGKNCSIAKQMNDQTEL--AINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 S + + + A A + + L+D GI D + + + +I+ N Sbjct: 248 KHGRISDVIEFVARVKAVQAFRMADVAVMLLDGAEGIVEQDMRLMQLAQDEGCALIVAVN 307 Query: 120 KMDTRIAQRNFYEIYSLDFK 139 K+D Q Y L+F+ Sbjct: 308 KLDLLSEQEWKYFAERLNFR 327 >gi|255292050|dbj|BAH90531.1| GTP-binding protein EngA [uncultured bacterium] Length = 466 Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 159/470 (33%), Positives = 241/470 (51%), Gaps = 29/470 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M IA++G PNVGKSTLFNRL + + A+V + PG+TRDRL G + F +VDT G+ Sbjct: 1 MTPVIALLGRPNVGKSTLFNRLTRTRDALVADFPGVTRDRLVGSGQLGDRPFWVVDTGGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 G++ ++ +++DQ A EA +L ++D++AG T D I LR P+ + NK Sbjct: 61 L-GEDSQLSGKVSDQALAAAQEADAVLLVVDARAGPTADDRTIAETLRTLGRPVRVAVNK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + + E + L E ISA H G +L + F Sbjct: 120 AEHLNPELVRAEFFELGLGEPTPISASHGHGVRDLLDTVLDAFP---------------- 163 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 P E + E + S +P+ AVVGRPN GKSTLINRLLG +RL+ G TRD Sbjct: 164 ----PAEPVPEEAEDS-----RPV-FAVVGRPNAGKSTLINRLLGQSRLIESPLPGTTRD 213 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 V + + DTAG+R+ +++ E++E+ +V K++Q++ + ++++D + Sbjct: 214 CVRVPVQLDGRDCLLLDTAGLRRRAQVHEAIEKFSVVKTLQAIDLAQVVVLVIDGELGIG 273 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 +QD RI G A+V+A+NK D + D LR + + LP IG + IS ++ Sbjct: 274 EQDARIAGQALQRGRALVVAVNKADTLDDSAR--AALRREVERRLPFIGFAPVEFISAKS 331 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G GL L S+ ++ TR+ TS L L+ +NPPP R +L+Y Q SP Sbjct: 332 GRGLKALTRSLFAVHSSALTRVPTSELTRLLEAIVTRNPPPMSGGRRAKLRYAHQGGHSP 391 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 P+ +I T +P Y RYL N R L+G PIR+ + +NPY + Sbjct: 392 PTVVIHGTQVAGLPAHYLRYLENSFREALGLTGTPIRIVTRQGENPYAGR 441 >gi|296133088|ref|YP_003640335.1| ribosome-associated GTPase EngA [Thermincola sp. JR] gi|296031666|gb|ADG82434.1| ribosome-associated GTPase EngA [Thermincola potens JR] Length = 440 Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 157/469 (33%), Positives = 253/469 (53%), Gaps = 43/469 (9%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA--D 62 +AIVG PNVGKSTLFNR+ ++A+V + PG+TRDR+Y A+ F +VDT GI D Sbjct: 6 VAIVGRPNVGKSTLFNRIAGSRIAIVEDKPGVTRDRIYKDAVWLDKEFTLVDTGGIEFRD 65 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 K S++ + Q LAI EA +ILF++D+++G+T D + LR P+I+V+NK++ Sbjct: 66 DKG-SMSDLILQQARLAIEEAEVILFVVDARSGLTATDEEVARMLRNTKKPVILVANKVE 124 Query: 123 TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 + Y+ Y L + + +SA H L +L + K P + E ++ Sbjct: 125 DFTGNMDVYDFYRLGLGDPIMVSASHGLNVGDLLDEVVK----HLPEYAAEEYGDD---- 176 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 ++IAV+GRPNVGKS+++N LLG R++ +G TRD++ Sbjct: 177 --------------------VIKIAVIGRPNVGKSSIVNALLGEERVIVSDVAGTTRDAI 216 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + + DTAGMRK +I E E+ +V +S+++V + ++++DA +Q Sbjct: 217 DTYFERGGQRYLLIDTAGMRKKGKIDEPTERYSVLRSLKAVDRSDVVLMIIDAQEVVTEQ 276 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMV--SDK--LNLLQDLRTKA--IKNLPQIGDIYINTI 356 D +I G A+VL +NKWD++ DK L +++R + ++ P I+++ + Sbjct: 277 DKKIAGYAHEAGKAMVLVVNKWDLIKKDDKTTLRYTEEIRQELGFVQYAPV---IFVSAL 333 Query: 357 SGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQI 416 + + + DL+ V E + + R++TS LN +Q+ NPPP+ R ++ YITQ Sbjct: 334 TWQRVPRILDLVNYVAEQHAM---RVSTSNLNDLVQEAVRLNPPPSDKGRRLKILYITQA 390 Query: 417 QSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 PP+F+IF P + SY+RYL N+LR F G PIRM + K Sbjct: 391 GVKPPTFIIFVNDPELMHFSYQRYLENQLRATFGFEGTPIRMVIKKRKE 439 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 66/125 (52%), Gaps = 6/125 (4%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + IA++G PNVGKS++ N L+ ++ +V + G TRD + G + ++DTAG+ Sbjct: 177 VIKIAVIGRPNVGKSSIVNALLGEERVIVSDVAGTTRDAIDTYFERGGQRYLLIDTAGMR 236 Query: 62 DGKNCSIAKQMNDQTEL----AINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIV 117 K I + + L A++ + ++L +ID++ +T D I + + +++V Sbjct: 237 --KKGKIDEPTERYSVLRSLKAVDRSDVVLMIIDAQEVVTEQDKKIAGYAHEAGKAMVLV 294 Query: 118 SNKMD 122 NK D Sbjct: 295 VNKWD 299 >gi|125973539|ref|YP_001037449.1| small GTP-binding protein [Clostridium thermocellum ATCC 27405] gi|256003357|ref|ZP_05428348.1| small GTP-binding protein [Clostridium thermocellum DSM 2360] gi|281417743|ref|ZP_06248763.1| ribosome-associated GTPase EngA [Clostridium thermocellum JW20] gi|166224331|sp|A3DE77|DER_CLOTH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|125713764|gb|ABN52256.1| small GTP-binding protein [Clostridium thermocellum ATCC 27405] gi|255992647|gb|EEU02738.1| small GTP-binding protein [Clostridium thermocellum DSM 2360] gi|281409145|gb|EFB39403.1| ribosome-associated GTPase EngA [Clostridium thermocellum JW20] gi|316940220|gb|ADU74254.1| ribosome-associated GTPase EngA [Clostridium thermocellum DSM 1313] Length = 440 Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 149/462 (32%), Positives = 244/462 (52%), Gaps = 31/462 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKST FN LV K++++V + PG+TRDR+Y + F ++DT GI Sbjct: 6 VAVVGRPNVGKSTFFNYLVGKRISIVEDTPGVTRDRIYAEVEWRNKKFTLIDTGGIEPYS 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I +QM Q E+AI A +I+F++D K G+T D + + LRK P+I+ NK+D + Sbjct: 66 EDKIMQQMKRQAEIAIETADIIIFMVDVKDGVTASDKEVATLLRKTKKPVIVAVNKVD-K 124 Query: 125 IAQ--RNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 I + +FYE Y+L F E++ IS+ H LG +L IFK F ++ E + Sbjct: 125 IGELPADFYEFYNLGFGELMAISSIHGLGMGDLLDEIFKYFPEEDAEDYDEDV------- 177 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 +++AVVG+PNVGKS+LINR+LG R++ G TRD++ Sbjct: 178 ---------------------IKVAVVGKPNVGKSSLINRILGEERVIVSDIPGTTRDAI 216 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 ++ DTAG+R+ S+I E +E+ ++ +S ++ + ++L+DA +Q Sbjct: 217 DTFVENEHGKFVFIDTAGIRRQSKINEKIEKYSIIRSWTAIERADVCLILIDAKEGVTEQ 276 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D +I G A ++ +NKWD++ + L++ R + L + + IS TG+ Sbjct: 277 DTKIAGYAHEQGKASIIVVNKWDLIEKQTGTLEEYRRTVHEKLGFMLYAPVIFISALTGQ 336 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 +D + + + RI+T LN L + PP+ + ++ Y+TQ PPS Sbjct: 337 RVDRIYGLIKHVADQAAMRISTGVLNDLLNEATAMVQPPSDKGKRLKIYYMTQSSVKPPS 396 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 F++F + SY+RYL N+LR +F G PI+ + + Sbjct: 397 FVLFINNMELMHYSYERYLENQLRKSFGFEGTPIKFILREKE 438 >gi|260887150|ref|ZP_05898413.1| ribosome-associated GTPase EngA [Selenomonas sputigena ATCC 35185] gi|330839080|ref|YP_004413660.1| ribosome-associated GTPase EngA [Selenomonas sputigena ATCC 35185] gi|260863212|gb|EEX77712.1| ribosome-associated GTPase EngA [Selenomonas sputigena ATCC 35185] gi|329746844|gb|AEC00201.1| ribosome-associated GTPase EngA [Selenomonas sputigena ATCC 35185] Length = 442 Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 152/469 (32%), Positives = 252/469 (53%), Gaps = 37/469 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFN+L +K++++V + PG+TRDR+Y A G F ++DT GI Sbjct: 6 VAIVGRPNVGKSTLFNKLGRKRVSIVDDLPGVTRDRIYLDAEWLGKEFTMIDTGGIELDT 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + I + M Q ++A+ EA +ILFL+D +AG+T D + LR P+++ NK+D+ Sbjct: 66 SDVILRSMRQQAQIAMEEADVILFLVDGRAGLTLADEEVGKMLRTTKKPVLLAVNKIDSP 125 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + YE Y+L + V ISA + + +L + +F E E K ++E Sbjct: 126 KQESDVYEFYNLGLGDPVPISATNAMNLGDLLDALVALFP--------EGAEEEKESDE- 176 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 + IAV+GRPNVGKS+L+N LLG R++ +G TRD++ Sbjct: 177 -------------------ISIAVIGRPNVGKSSLVNALLGEERVIVSDVAGTTRDAIDT 217 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + ++ + DTAGMR+ +I +E+ +V +++++V + +V+LDAT +QD Sbjct: 218 HFMAEDTKFILIDTAGMRRKGKIDAPIERYSVMRALRAVDRADVVLVVLDATAGITEQDK 277 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDK-----LNLLQDLRTKAIKNLPQIGDIYINTISGR 359 +I +G AVVL +NKWD+ +K L +LR + + L +Y + ++ + Sbjct: 278 KIAGYAHESGKAVVLIVNKWDIYENKDEKSTLRFTDELRIE-LGFLQYAPVLYTSALTHQ 336 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 + DL+ V + + R+ TS LN ++ NPPP + +++Y+TQ Sbjct: 337 RVARVTDLVKYVADQASM---RVKTSILNDLVRDMIAVNPPPAHKGKQLKIRYMTQADIR 393 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYI 468 PP F++F P + SY RY+ N+LR +F G P+R+ + + I Sbjct: 394 PPKFIVFVNEPELMHFSYLRYIENKLRESFGFEGTPLRLIVRGREEEEI 442 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 68/121 (56%), Gaps = 2/121 (1%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI-AD 62 +IA++G PNVGKS+L N L+ ++ +V + G TRD + + F ++DTAG+ Sbjct: 178 SIAVIGRPNVGKSSLVNALLGEERVIVSDVAGTTRDAIDTHFMAEDTKFILIDTAGMRRK 237 Query: 63 GK-NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 GK + I + + A++ A ++L ++D+ AGIT D I + + ++++ NK Sbjct: 238 GKIDAPIERYSVMRALRAVDRADVVLVVLDATAGITEQDKKIAGYAHESGKAVVLIVNKW 297 Query: 122 D 122 D Sbjct: 298 D 298 >gi|288918466|ref|ZP_06412817.1| small GTP-binding protein [Frankia sp. EUN1f] gi|288350106|gb|EFC84332.1| small GTP-binding protein [Frankia sp. EUN1f] Length = 466 Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 148/457 (32%), Positives = 235/457 (51%), Gaps = 31/457 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ A+ NG F +VDT G + Sbjct: 32 LAVVGRPNVGKSTLVNRILGRRAAVVEDTPGVTRDRVAYDAVWNGRRFTVVDTGGW-EPD 90 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +A ++ +Q A++ A +LF+ID+ G T D A+ L + P+I+ +NK+D Sbjct: 91 ARGLAARVAEQARAALDTADGVLFVIDTTVGATDADEAVARVLHRSGRPVILAANKVDDA 150 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + ++SL E +SA H G+ +L + + E+ Sbjct: 151 RTEADAAALWSLGLGEPYPVSALHGRGSGDLLDAVLAVLP------------------EA 192 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P+E E P R+A++GRPNVGKS+L+N+++G R L +G TRD V Sbjct: 193 PRERFVEE--------DGPRRVALIGRPNVGKSSLLNKIVGAERSLVHDVAGTTRDPVDE 244 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 DTAG+R+ + E + ++ ++ E IVLL A P +QD Sbjct: 245 LVTVGGETWMFIDTAGLRRRVKEASGAEYYSSLRTASALEAAEVAIVLLAADEPITEQDQ 304 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 RI+ V G A+VLA NKWD++ + L DL + +++L ++ IS RTG Sbjct: 305 RIISMVTEAGRALVLAFNKWDLLDTERRL--DLEQEIVRDLGRVAWAPRVNISARTGRAT 362 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 D L ++ + W TRI T LN+WL + PPP+ + R+ + TQ PP F+ Sbjct: 363 DKLAPALRTSLESWGTRIPTGRLNAWLTEIVAATPPPSRGGKIPRVLFATQAGVRPPRFV 422 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 +F T + +Y+R+L +LR +F +G PI + + Sbjct: 423 VFTT--GFLESAYRRFLERKLREDFGFAGTPIEISIR 457 >gi|78047628|ref|YP_363803.1| GTP-binding protein EngA [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|123743974|sp|Q3BTW0|DER_XANC5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|78036058|emb|CAJ23749.1| GTP-binding protein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 465 Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 156/472 (33%), Positives = 251/472 (53%), Gaps = 31/472 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVI-FNIVDTAG 59 M+ +A+VG PNVGKST+FN L + + A+V + PG+TRDR YG ++ F +VDT G Sbjct: 1 MLPLVALVGRPNVGKSTIFNALTRTRDALVHDQPGVTRDRNYGVCRLDEQQPFIVVDTGG 60 Query: 60 IADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 IA G +A Q A EA L+LF++D + G + D I ++LRK P ++V N Sbjct: 61 IA-GDEEGLAGATARQARAAAGEADLVLFVVDGREGASSLDDEILAWLRKLARPTVLVIN 119 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNK 179 K+D + E F ++V +SA H G EL + ++ E+++N+ Sbjct: 120 KIDGTDEETVRSEFARYGFSDVVALSAAHRQGIDELLDEVGARLPEEGAG---ELLDNDP 176 Query: 180 RNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITR 239 +RIA VGRPNVGKSTL+NRLLG R++ G TR Sbjct: 177 AR----------------------VRIAFVGRPNVGKSTLVNRLLGEERMIASEVPGTTR 214 Query: 240 DSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPF 299 DS+++ + DTAG+R+ ++ E++E+ + K++Q++ C+ +++LDAT Sbjct: 215 DSIAVDLERDGRQYRLIDTAGLRRRGKVEEAVEKFSAFKTLQAIEQCQVAVLMLDATEGV 274 Query: 300 EKQDLRIVDSVFNTGHAVVLALNKWDMVSD-KLNLLQDLRTKAIKNLPQIGDIYINTISG 358 QD I+ ++ + G A+V+A+NKWD SD + +DL ++ + + + I+ + Sbjct: 275 TDQDATILGAILDAGRALVVAINKWDGQSDYQRAQAEDLLSRKLGFVNWAEAVRISALH- 333 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 G G+ +L ++ + +TS +N L+ NPPP+I ++L+Y+ + Sbjct: 334 --GSGMRELFQAIHRAHASATHEFSTSEVNQALEIAYETNPPPSIRGHVSKLRYVHPGGA 391 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP+F++ T +PESYKRYL N R F L G P+R F+ NPY K Sbjct: 392 NPPTFIVHGTRLKVLPESYKRYLENFFRKRFKLVGTPVRFIFREGVNPYEGK 443 >gi|239815182|ref|YP_002944092.1| GTP-binding protein EngA [Variovorax paradoxus S110] gi|259645888|sp|C5CXH0|DER_VARPS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|239801759|gb|ACS18826.1| small GTP-binding protein [Variovorax paradoxus S110] Length = 447 Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 149/467 (31%), Positives = 248/467 (53%), Gaps = 27/467 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTLFNRL + + A+V + G+TRDR YG + F ++DT G Sbjct: 5 VALVGRPNVGKSTLFNRLTQTRDAIVADFAGLTRDRHYGNGRLGKHEFIVIDTGGFEPDA 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I K+M QT A+ EA +++F++D++ G++ DH I + LR+ P ++ +NK + Sbjct: 65 GSGIYKEMAKQTRQAVAEADVVIFVVDAREGLSAQDHDIANELRRLGKPCVLAANKAEGM 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + Y L F ++ +SA H G +L + PL + + + Sbjct: 125 HDGTKLVDFYELGFGDVHGVSAAHGQGMRDLVELALA---------PLNLPDPDD----- 170 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 ++ +++KP+++AV GRPNVGKSTLIN LG RL+ G TRD++S+ Sbjct: 171 ---------EADEDDVNKPIKLAVAGRPNVGKSTLINTWLGEERLVAFDLPGTTRDAISV 221 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + E+ DTAG+R+ ++ E++E+ +V K++Q++ + ++LLDAT QD Sbjct: 222 PFERNGQRFELIDTAGLRRKGKVFEAIEKFSVVKTLQAIESASVVLLLLDATQGVTDQDA 281 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 I + +G AVV+A+NKWD V + ++ + LP + ++ IS +GL Sbjct: 282 HIAGYILESGRAVVIAINKWDAVDSYQR--EQIQRQIETRLPFLKFASLHFISAIKRQGL 339 Query: 365 DDLMVSVLEINKLWKTRITTSYLNS-WLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 + ++ + +K +++T L L+ Q Q+P R +L+Y Q +PP Sbjct: 340 GPVWQAIAQAHKSATRKMSTPVLTRLLLEAVQFQSPKRAGMFR-PKLRYAHQGGMNPPVI 398 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +I + E+YKR+L R R F L G P+R+ F+SS+NP+ K Sbjct: 399 IIHGNSLEHVTEAYKRFLEGRFRKEFDLVGTPLRIQFKSSQNPFADK 445 >gi|313675797|ref|YP_004053793.1| ribosome-associated GTPase enga [Marivirga tractuosa DSM 4126] gi|312942495|gb|ADR21685.1| ribosome-associated GTPase EngA [Marivirga tractuosa DSM 4126] Length = 435 Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 148/462 (32%), Positives = 244/462 (52%), Gaps = 38/462 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST FNRLV++K A++ N G+TRDR YG+A G F ++DT G G Sbjct: 5 VAIVGRPNVGKSTFFNRLVERKQAIMDNESGVTRDRQYGEAQWIGKKFTVIDTGGYVTGS 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N K++ Q + A+ EA +ILF++D G+T D + +R+ P+ +V+NK D Sbjct: 65 NDIFEKEIRKQVKEALKEATVILFMVDCHTGLTDMDKDFANVVREVGKPVFVVANKADNT 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 E YS+ F E+ +S+ GT E+ + +F + P E + Sbjct: 125 EKSYMAGEFYSMGFDEVFSMSSASGSGTGEVLDAVVALFPEDDHKDPFEGVP-------- 176 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 R+A++GRPN GKS+ +N LLG R + +G TRDS++ Sbjct: 177 --------------------RLAILGRPNAGKSSFLNALLGDERTIVTDIAGTTRDSINT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + DTAG+RK ++ + +E + +++Q+++ + IV++DAT FE QD+ Sbjct: 217 HYKLYGKDFILTDTAGLRKKTKTKDDIEFYSTIRAIQALQDSDVCIVMIDATRGFESQDM 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDI-YINTISGRTGEG 363 +I+ +++ +NKWD++ +K D K I+ ++G + YI I E Sbjct: 277 QIIGLAHKNKKGIMIMVNKWDLI-EKDGKTHDKFKKEIQE--KLGPLDYIPIIFTSVTE- 332 Query: 364 LDDLMVSVLEI-NKLWKTR---ITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 + +E+ K++ +R +TTS LN + K + PPP + ++ ++KY TQ+ + Sbjct: 333 -KQRIFQAIELATKIYFSRTEKVTTSALNEAMLKEIEKYPPPALKGKHIKIKYATQLPTY 391 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 P+F FC P I Y+RYL NRLR +F G+P+++ F+ Sbjct: 392 TPTFAFFCNLPQYIKPPYERYLENRLREHFDFEGVPVKLVFR 433 >gi|302389542|ref|YP_003825363.1| ribosome-associated GTPase EngA [Thermosediminibacter oceani DSM 16646] gi|302200170|gb|ADL07740.1| ribosome-associated GTPase EngA [Thermosediminibacter oceani DSM 16646] Length = 436 Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 155/456 (33%), Positives = 237/456 (51%), Gaps = 28/456 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +T+AIVG PNVGKSTLFNR++ K++++V + PG+TRDR+YGQ G F +VDT GI Sbjct: 1 MSFTVAIVGRPNVGKSTLFNRIIGKRISIVDDKPGVTRDRIYGQVEWRGKKFTLVDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + + + Q E AI+ + LILFL+DSK G+ P D + + LRK PII V NK Sbjct: 61 DPEGSDVMTSHIRRQVEFAIDSSDLILFLLDSKEGLLPTDKEVAALLRKSGKPIIPVINK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D A+ YE Y L E V ISA H +L L+ I Sbjct: 121 VDDYAAKPELYEFYQLGLGEPVFISAIHGSNVGDL----------------LDQIVGFID 164 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 +E P + EG +++AVVG+PNVGKS+L+N +LG R++ G TRD Sbjct: 165 EDEGPDYD---EG---------VIKVAVVGKPNVGKSSLVNAILGEERVIVSDIPGTTRD 212 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 ++ + ++ + + DTAGMR+ SR+ E +E + +++ +V + +V+LDAT Sbjct: 213 AIDTPFEYEGQKMVLIDTAGMRRKSRVKEDIEFYSNIRALGAVERADIVLVVLDATQEIS 272 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 +QD +I G AV++ +NKWD+V + K I I +S +T Sbjct: 273 EQDKKIAGIAHEAGKAVIIVVNKWDLVEKDDKTIYRYTENIRKEFAFIQYAPIVFVSAKT 332 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 + ++ ++ + + + RI LN ++ PPTI R ++ + QI P Sbjct: 333 KKRVNKVLELIRFVMDQYTFRIEKGVLNELVEDATAMLAPPTIKGRRLKIYSVAQIGVKP 392 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 P+F++ + SY RYL N+LR F L G P+ Sbjct: 393 PTFVLTVNDTELLHFSYVRYLENKLRERFGLEGTPV 428 >gi|305666364|ref|YP_003862651.1| GTP-binding protein EngA [Maribacter sp. HTCC2170] gi|88708356|gb|EAR00593.1| GTP-binding protein EngA [Maribacter sp. HTCC2170] Length = 496 Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 153/457 (33%), Positives = 236/457 (51%), Gaps = 31/457 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +AIVG PNVGKST FNRL++++ A+V G+TRDR YG++ NG F+I+DT G Sbjct: 63 MSAIVAIVGRPNVGKSTFFNRLIQRREAIVDAVSGVTRDRHYGKSDWNGKEFSIIDTGGY 122 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 G + ++++ Q ELAI EA ++F++D + G+T D + L K N P+ + NK Sbjct: 123 VVGSDDIFEQEIDKQVELAIEEADALIFMVDVETGVTGMDEDVAKILHKVNKPVFLAVNK 182 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D + E YSL E +S+ + GT EL + +EM+ +N Sbjct: 183 VDNAKRAEDAVEFYSLGLGEYYNLSSINGSGTGELLDAL------------VEMLPDNVE 230 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 E S R AVVGRPN GKS+ IN L+G R + +G TRD Sbjct: 231 EE------------------SDLPRFAVVGRPNAGKSSFINALIGEERYIVTDIAGTTRD 272 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ +N + DTAG+R+ S++ E LE +V +S++++ + ++LLDAT F+ Sbjct: 273 SIDTKYNRFGFEFNLVDTAGIRRKSKVKEDLEFYSVMRSVRAIEHSDVCLLLLDATRGFD 332 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDK-LNLLQDLRTKAIKNLPQIGDIYINTISGR 359 Q I +V+ +NKWD+V DK N ++ K K + D+ I IS Sbjct: 333 GQVSNIFWLAQRNNKGIVILVNKWDLVEDKETNTMKHFTEKIKKVIEPFTDVPILFISAL 392 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 T + + + + +++ K +I T N + PPP +Y ++K+ TQ+ + Sbjct: 393 TKQRIYKAIETAVDVYKGRSLKIPTRKFNDIMLPIIENYPPPAYKGKYVKIKFCTQLPTP 452 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 P F FC P + E YKR+L N+LR NF +G+PI Sbjct: 453 YPQFAFFCNLPQYVREPYKRFLENKLRENFDFTGVPI 489 >gi|298207544|ref|YP_003715723.1| GTP-binding protein EngA [Croceibacter atlanticus HTCC2559] gi|83850180|gb|EAP88048.1| GTP-binding protein EngA [Croceibacter atlanticus HTCC2559] Length = 434 Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 148/461 (32%), Positives = 239/461 (51%), Gaps = 29/461 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +AIVG PNVGKST FNR+++++ A+ G+TRDR YG+A NG F ++DT G Sbjct: 1 MSAIVAIVGRPNVGKSTFFNRMIQRREAITDAISGVTRDRHYGKADWNGKEFTLIDTGGY 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 G + ++++ Q ELAI+EA +ILF++D +GIT D + LR+ N P+++V NK Sbjct: 61 VVGSDDIFEQEIDKQVELAIDEADVILFMVDVTSGITGMDEDVAKLLRRSNKPMMLVVNK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D + E Y+L E I + + GT +L + KI +K +R Sbjct: 121 VDNAERHADAVEFYNLGLGEYHAIGSMNGAGTGDLLDELVKILPEK-----------EER 169 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 E+S R AVVGRPN GKS+ IN L+G +R + +G TRD Sbjct: 170 EEDSLP------------------RFAVVGRPNAGKSSFINALIGEDRYIVTDIAGTTRD 211 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ +N + DTAG+R+ +++ E LE +V +S++++ + ++++DAT F+ Sbjct: 212 SIDTKYNRFGFEFNLVDTAGIRRKTKVKEDLEFYSVMRSVRAIEHADVCLLVMDATRGFD 271 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 Q I +V+ +NKWD+V +++ + + D+ I IS T Sbjct: 272 NQVQNIFWLAERNRKGIVILVNKWDLVEKDHKSVKEFTKHIHEQIAPFTDVPIIFISALT 331 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 + + + + +E+ + +I TS LN + PPP +Y ++KY Q+ + Sbjct: 332 KQRIFKAIETAVEVYEARNQKIKTSKLNDLMLPIIENQPPPATKGKYIKIKYCMQLPTPQ 391 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 P F F P I E YKR++ N+ R NF SG+PI + F+ Sbjct: 392 PQFAFFANLPQYIKEPYKRFIENKFRENFDFSGVPISIYFR 432 >gi|330975909|gb|EGH75975.1| GTP-binding protein Der [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 490 Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 159/467 (34%), Positives = 253/467 (54%), Gaps = 10/467 (2%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ IA+VG PNVGKST+FNRL + + A+VG+ G+TRDR YG+A G + ++DT GI Sbjct: 1 MVPVIALVGRPNVGKSTMFNRLTRTRDAIVGDLSGLTRDRQYGEAKWQGRSYILIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + G + ++M +Q+ LAI EA ++LFL+D++AG T D I LRK+N +V+NK Sbjct: 61 S-GDEHGMDEKMAEQSLLAIEEADVVLFLVDARAGYTAADQMIGEHLRKRNKRSYVVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D E + + + ++ H G S++ +I +++P E+ E + Sbjct: 120 IDNIDENLARAEFSPMGLGDAIPVAGAHGRGISQM----LEIALREFPRDEDELEEGAEV 175 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 E + + S K+ ++IA++GRPNVGKSTL+NR+LG +R++ + G TRD Sbjct: 176 EEVAEGQEAKRIPGPSEKD---GIKIAIIGRPNVGKSTLVNRMLGEDRVIVYDEPGTTRD 232 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ I + + DTAG+RK +I E +E+ +V K++Q+++ I ++DA Sbjct: 233 SIYIPFERNEEKYTLIDTAGVRKRGKIHEEVEKFSVVKTLQAIKDANVVIFVMDAREGVV 292 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 DL ++ G A+V+ALNKWD ++ + + DI+ IS Sbjct: 293 DHDLNLLGFALEAGRALVIALNKWDGMTPGERDFVKIELERRLFFVDFADIHF--ISALH 350 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G G+ +L SV K TR TS L L+ ++ PP + +R +L+Y ++P Sbjct: 351 GTGVGNLYQSVQNSFKSAVTRWPTSRLTQILEDAVSEHAPPMVGSRRIKLRYAHLGGANP 410 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 P +I K+P+SY RYL N R L G PIR+ F+ +NPY Sbjct: 411 PLIVIHGNQVEKVPKSYVRYLENTYRRVLKLVGTPIRIEFKGGENPY 457 >gi|297568834|ref|YP_003690178.1| ribosome-associated GTPase EngA [Desulfurivibrio alkaliphilus AHT2] gi|296924749|gb|ADH85559.1| ribosome-associated GTPase EngA [Desulfurivibrio alkaliphilus AHT2] Length = 487 Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 147/461 (31%), Positives = 240/461 (52%), Gaps = 26/461 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKS+LFNRL + A+V PG+TRDR Y + N F +VDT G+ Sbjct: 52 VALVGRPNVGKSSLFNRLAGSRKAIVDPTPGVTRDRHYEKITWNDRRFILVDTGGLESDT 111 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 I + + +QT A+ EA ++LFL+D + GI P D + LR+ + + NK+D Sbjct: 112 TTEINRLIQEQTSQAVAEADVVLFLLDGREGILPDDQEVVEILRRSGKKVFYLINKIDAP 171 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 A + Y L +E+ +SAEH G +L L+ + + Sbjct: 172 EQAAKLLPTFYELGVEELWPVSAEHGQGIGDL----------------LDRVAAELPPAQ 215 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 P E +++E V A +GRPNVGKS+LINRLLG R++ + G TRDSV Sbjct: 216 EPGEEVSAEDTVGV---------AFIGRPNVGKSSLINRLLGEERMVVSNLPGTTRDSVD 266 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + + DTAG+R+ ++ E +E+ +V ++++++ C+ ++++DA +QD Sbjct: 267 TLLTRADKKYLLIDTAGIRRKGKVHEKVEKFSVLRALRTLERCDLALIVIDALEGVTEQD 326 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 +++ G A ++ LNKWD++ Q L + + G ++ +S TG G Sbjct: 327 TKVLGYGLERGRACLVLLNKWDLIEHDRKQQQRLLEDVKRAVHFAGYAPVHRVSALTGHG 386 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 L L + ++ + ++ + TT+ LN L++ +PP R +L Y+TQI SSPP+ Sbjct: 387 LGKLFPLIDKVAEQYRRKFTTAVLNRILEEAVQAHPPALHKGRRVKLNYVTQIASSPPTL 446 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 +IF P I SY R+L+NR R L +P+R+ F+ + Sbjct: 447 IIFTNDPKGIHFSYSRFLVNRFREALGLEQVPLRIFFRHKR 487 >gi|303229883|ref|ZP_07316659.1| ribosome-associated GTPase EngA [Veillonella atypica ACS-134-V-Col7a] gi|302515439|gb|EFL57405.1| ribosome-associated GTPase EngA [Veillonella atypica ACS-134-V-Col7a] Length = 444 Score = 261 bits (666), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 159/467 (34%), Positives = 249/467 (53%), Gaps = 40/467 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTLFN +V K++++V + PG+TRDR+Y A F ++DT GI Sbjct: 6 VAVVGRPNVGKSTLFNAIVNKRISIVEDIPGVTRDRIYFDAEWLNREFTMIDTGGIEFVT 65 Query: 65 NCS--IAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 S I K M Q ELAI EA +ILF++D K GI P D + + LR P+++V NK+D Sbjct: 66 ENSHVIPKMMRLQAELAIEEADVILFVVDGKQGIVPADEEVANILRTSGKPVVLVVNKID 125 Query: 123 TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 + + N YE Y+L + + ISA++ + +L K F + N E Sbjct: 126 SVNQEPNIYEFYNLGLGDPIGISAKNLMNLGDLLDDTVKHFPP---------VGTNVDEE 176 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 ++ + +A++GRPNVGKS+L N LLG +R++ +G TRDS+ Sbjct: 177 DT-------------------IHVAIIGRPNVGKSSLTNALLGQDRVIVSDVAGTTRDSI 217 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 W + + DTAGMR+ S+I E++E+ ++ +S++SV + +++LD +Q Sbjct: 218 DTHWTHGDQKFVLIDTAGMRRKSKIDEAVERYSIVRSLRSVDRSDIVVLVLDGVDGVTEQ 277 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMV--SDKLNLLQDLRTKAIKNLPQIGDIYINTI---S 357 D +I + G V++ +NKWD+V DK L T+ I + ++G + I S Sbjct: 278 DKKIAGYAYEAGKGVIIVVNKWDLVEKDDKTTLRY---TEDIYD--ELGFLQFAPILFAS 332 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 T + + L + +++ R++T LN LQ Q NP P+ R ++ Y+TQ Sbjct: 333 ALTKQRIHRLADMLKFVSEQQYRRVSTGTLNQLLQDAQTVNPVPSRNGRIPKIYYMTQAS 392 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 PP+F++F P I SY R+L NRLR +F G PIR+ + K Sbjct: 393 VKPPTFILFVNEPELIHFSYMRFLENRLRESFGFEGTPIRLILRGKK 439 >gi|227504288|ref|ZP_03934337.1| GTP-binding protein EngA [Corynebacterium striatum ATCC 6940] gi|227199127|gb|EEI79175.1| GTP-binding protein EngA [Corynebacterium striatum ATCC 6940] Length = 541 Score = 261 bits (666), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 154/462 (33%), Positives = 246/462 (53%), Gaps = 40/462 (8%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI- 60 + T+A+VG PNVGKS+L NR + ++ AVV +HPG+TRDR+ A NG F + DT G Sbjct: 103 LCTVAVVGRPNVGKSSLVNRFLGRREAVVEDHPGVTRDRVSYVAEWNGQRFFVQDTGGWD 162 Query: 61 --ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVS 118 G + +IA+Q ELA+N A +I+F++D+K GIT D + L+K +P+I+VS Sbjct: 163 PNVKGIHAAIARQ----AELAMNTADVIVFVVDTKVGITETDAVMARKLQKSEVPVILVS 218 Query: 119 NKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 NK D+ + E Y+L + +SA+H G +++ I ++F ++ P H Sbjct: 219 NKFDSETMYADMAEFYALGLGDPWPVSAQHGRGGADVLDEILRLFPEE-PRHA------- 270 Query: 179 KRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 +IT S P R+A+VG+PNVGKS+L+N+L R + + +G T Sbjct: 271 ---------SIT----------SGPRRVALVGKPNVGKSSLLNKLTSEERSVVDNAAGTT 311 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 D V + DTAG+RK + + E ++ + E I+L+DA+ Sbjct: 312 VDPVDSLVQLDQRLWKFIDTAGLRKKVKNAQGHEYYASLRTRGVIDAAEVCIMLIDASEE 371 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWD-MVSDKLNLLQDLRTKAIKNLPQIGDIYINTIS 357 +QD R+++ V G A+V+A NKWD M D+ L + +++LP + + I+ + Sbjct: 372 VSEQDQRVLNMVLEAGKALVIAFNKWDLMDEDRRYYLDREIDEQLRHLPWVTRVNISAQT 431 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 GR + L+ M+ LE W R++T LN+WL++ NPPP NR R+ + TQ Sbjct: 432 GRALQRLEPAMIEALES---WDQRVSTGQLNNWLREAIAANPPPMKNNRLPRVLFATQAS 488 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 + PP+ ++F T + Y+RYL + R F G P+R+ Sbjct: 489 TQPPTIVLFTT--GFLDAGYRRYLERKFRERFGFHGSPVRIA 528 >gi|158522145|ref|YP_001530015.1| small GTP-binding protein [Desulfococcus oleovorans Hxd3] gi|226741135|sp|A8ZU05|DER_DESOH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|158510971|gb|ABW67938.1| small GTP-binding protein [Desulfococcus oleovorans Hxd3] Length = 458 Score = 261 bits (666), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 152/468 (32%), Positives = 239/468 (51%), Gaps = 50/468 (10%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + I+G PNVGKSTLFNRL + + A+V + PG+TRDRLYG NGV F++VDT G G Sbjct: 5 VVILGRPNVGKSTLFNRLTRTQNALVDDMPGVTRDRLYGDVEWNGVFFSLVDTGGFLSGD 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + Q AI+EA +L + D K+GI+P+D +FL+ + P+ + NK+D+ Sbjct: 65 DDFFMPHIQSQIHRAIDEADAVLLVFDGKSGISPFDREAMAFLQSASCPVFYLVNKIDS- 123 Query: 125 IAQRNFY--EIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 +R Y E + L + +S H G ++ + + P Sbjct: 124 -PEREVYTAEFFGLGLDNLYPVSGAHGYGVTDFLDDLVNALPETEP-------------- 168 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 E P +++ +++AVVGRPNVGKSTLINR+LG R++ G TR+SV Sbjct: 169 EPPADDM--------------IKLAVVGRPNVGKSTLINRILGQERMIVSDVPGTTRESV 214 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + DTAG+R+ SR++ LE+ + K+++S+ C+ ++L+DA Q Sbjct: 215 DTVCEIDGRSYLLIDTAGLRRKSRVSVKLEKFSAIKTLKSLDRCDIALILVDAEEGVTDQ 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDK-------LNLLQDLRTKAIKNLPQIGDIYINT 355 D+ I F G + +NKWD+ ++ + LQD + K + P + T Sbjct: 275 DVTIAGYAFERGCGCIFLVNKWDLAKEQEKKAKTFYDDLQD-QAKFLSFAPAV------T 327 Query: 356 ISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLK--YI 413 IS TG + + + ++ + I T LN+ ++ PP F++ RLK Y Sbjct: 328 ISAATGFRVKKIFELIDAVHAQYTFNIKTGELNNIFERATRSKEPP--FHKGRRLKFNYA 385 Query: 414 TQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 Q+ + PP+F+ F FP+ + SYKRYLIN +R L PIR+ F+ Sbjct: 386 VQVATGPPTFICFVNFPSGVHFSYKRYLINAIRRETGLDKTPIRLFFR 433 >gi|198274289|ref|ZP_03206821.1| hypothetical protein BACPLE_00431 [Bacteroides plebeius DSM 17135] gi|198272779|gb|EDY97048.1| hypothetical protein BACPLE_00431 [Bacteroides plebeius DSM 17135] Length = 441 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 160/454 (35%), Positives = 244/454 (53%), Gaps = 30/454 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNRL K + A+V G TRDR YG++ G F++VDT G Sbjct: 9 VAIVGRPNVGKSTLFNRLTKSRQAIVNEQAGTTRDRQYGKSEWLGKEFSVVDTGGWVVNS 68 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +++ Q LAI+EA +ILF++D G+T D + LR+ P+++V+NK D Sbjct: 69 DDVFEEEIRKQVMLAIDEADVILFVVDVMNGVTDLDMEVAEILRRSKTPVLLVANKTDNN 128 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 Q N E YSL + +SA GT +L ++ FK++ P E+++ ++ Sbjct: 129 DLQYNAAEFYSLGLGDPYCVSALSGSGTGDLLDLVLSKFKKETP----EILD-----DDI 179 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P R AVVGRPN GKS++IN +G +R + +G TRDS+ Sbjct: 180 P-------------------RFAVVGRPNAGKSSIINAFIGEDRNIVTEIAGTTRDSIYT 220 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 +N + DTAG+RK ++++E LE +V +S++S+ + I++LDAT E QDL Sbjct: 221 RYNKFGFDFYLVDTAGIRKKNKVSEDLEYYSVIRSIRSIENSDVCILMLDATRGIEGQDL 280 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKN-LPQIGDIYINTISGRTGEG 363 I V +V+ +NKWD++ DK + AI+N L D I S T + Sbjct: 281 NIFSLVQRNQKGLVVVVNKWDLIEDKTVKVMKGYEDAIRNRLAPFTDFPIVFTSALTKQR 340 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP-PS 422 + ++ E+ + TRI T+ LN L PPP+ +Y ++KYITQ+ ++ PS Sbjct: 341 ILKVLELAKEVYQARTTRIPTARLNEELLPLIEAYPPPSNKGKYIKIKYITQLPNTQVPS 400 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 F+ F P + E Y+R+L N++R + LSG PI Sbjct: 401 FVFFANLPQYVKEPYRRFLENKIRERWKLSGTPI 434 >gi|104780244|ref|YP_606742.1| GTP-binding protein EngA [Pseudomonas entomophila L48] gi|166225841|sp|Q1IEH7|DER_PSEE4 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|95109231|emb|CAK13928.1| GTP-binding protein EngA [Pseudomonas entomophila L48] Length = 488 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 166/472 (35%), Positives = 248/472 (52%), Gaps = 17/472 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ IA+VG PNVGKST+FNRL K + A+VG+ G+TRDR YG A G + ++DT GI Sbjct: 1 MVPVIALVGRPNVGKSTMFNRLTKTRDAIVGDLSGLTRDRQYGDASWQGRSYILIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 G + ++M +Q+ +AI EA +LFL+D++AG+T D I LRK+N I+V+NK Sbjct: 61 T-GDEVGMDEKMAEQSLMAIEEADYVLFLVDARAGMTAADQMIAEHLRKRNKEAILVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLE--MIENN 178 +D A E L + ++ G + L + P P+E + E+ Sbjct: 120 IDNIDADVARAEFSPLGMGNAIPVAGSQGRGINALMEAVLG----HIPRDPVEDALDEDV 175 Query: 179 KRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 EE+ + SE K +K IA++GRPNVGKSTL+NR+LG R++ Q G T Sbjct: 176 AEGEEATRIPGPSE-KDGIK-------IAIIGRPNVGKSTLVNRMLGEERVVVYDQPGTT 227 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RDS+ I + DTAG+RK +I E +E+ +V K++Q+++ I ++DA Sbjct: 228 RDSIYIPFERDGEKYTFIDTAGVRKRGKIHEEVEKFSVVKTLQAIKDANVVIFVMDAREG 287 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 DL ++ + G AVV+ALNKWD + + ++T+ + L + I+ IS Sbjct: 288 VVDHDLNLLGFALDAGRAVVIALNKWDGM--EPGERDYVKTELERRLFFVDFADIHFISA 345 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 G G+ L SV TR TS L L+ + PP + R +L+Y + Sbjct: 346 LHGTGVGHLYKSVQAAFMSAVTRWPTSRLTQILEDAISVHQPPLVNGRRIKLRYAHLGGA 405 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I +KIP SY RYL N R L G PIR+ ++ NP+ K Sbjct: 406 NPPLIVIHGNQTDKIPNSYSRYLENTYRRVLKLVGTPIRIEYKGGDNPFEGK 457 >gi|312131342|ref|YP_003998682.1| ribosome-associated gtpase enga [Leadbetterella byssophila DSM 17132] gi|311907888|gb|ADQ18329.1| ribosome-associated GTPase EngA [Leadbetterella byssophila DSM 17132] Length = 437 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 151/463 (32%), Positives = 245/463 (52%), Gaps = 30/463 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +AIVG PNVGKSTLFNRL+++++A+ N PG+TRDR YG A F ++DT G Sbjct: 1 MANIVAIVGRPNVGKSTLFNRLIEERVAITDNQPGVTRDRHYGNAFWLKKHFTLIDTGGY 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 G + + + + Q ELAI EA +ILF++D+K G+T D LR+ P+ IV+NK Sbjct: 61 VVGSDDTFEEAIRSQVELAIEEATVILFVVDAKDGLTELDEEFADVLRRSKKPVFIVANK 120 Query: 121 MDT-RIAQRNFYEIYSLDF-KEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 +T A E Y + E+ ISA GT EL E + + Sbjct: 121 AETFERANLTASEFYGMGLNSEVYPISAIDGSGTGELLDAF------------CEHLSDE 168 Query: 179 KRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 K EE+ +E + RIA++GRPN GKS+ +N LLG +R + +G T Sbjct: 169 K--EEANEEGVP--------------RIAILGRPNAGKSSFLNALLGKDRSIVTDIAGTT 212 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RD++ + + DTAG+RK +++ E LE +V +S++++ + I+LLDAT Sbjct: 213 RDAIDTRYKMFGKDFILTDTAGIRKKAKVNEDLEFYSVLRSIKALDKSDVCIILLDATKG 272 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 E QD+ I+ N +VL +NKWD + ++ + ++ + + + + S Sbjct: 273 LESQDISIIAQAHNAKKGIVLMVNKWDALEKDSKTADTMKKEILERIAPMNYMPVIFASA 332 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 + + ++ + +E+ + T+I TS +N L + PPP+I + ++KYI Q+ + Sbjct: 333 LNKQRIFQVIEAAMEVYENKTTQIPTSKINDVLLPIIERTPPPSIKGKTVKIKYIVQLPT 392 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 P+F+ FC P + ESY+R+L N++R +F G+ I F+ Sbjct: 393 PSPTFIFFCNLPQYVKESYQRFLQNQIREHFGFEGVVITTFFR 435 >gi|94501121|ref|ZP_01307644.1| predicted GTPase [Oceanobacter sp. RED65] gi|94426697|gb|EAT11682.1| predicted GTPase [Oceanobacter sp. RED65] Length = 482 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 162/465 (34%), Positives = 250/465 (53%), Gaps = 28/465 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTLFNRL + + A+V + G+TRDR +G + + +VDT GI+ G Sbjct: 5 IALVGRPNVGKSTLFNRLTRTRDALVADLAGLTRDRKFGAGKVGERDYIVVDTGGIS-GM 63 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +M +Q+ A++EA ++LFL+D++AG+T D I LR +V NK+D Sbjct: 64 EQGLDAKMAEQSFQAMDEADIVLFLVDARAGLTSADKMIAQHLRATEKKTYVVVNKIDGL 123 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 E Y L E+ I+A H+ G + L +H L NE Sbjct: 124 NPDVATSEFYELGLGELQTIAATHNRGINVLM------------DHVL--------NELP 163 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P+ I + K +RI+VVGRPNVGKSTL+NR+LG +R++ G T DS+ I Sbjct: 164 PEFQIDED-ADEEDESEKGVRISVVGRPNVGKSTLVNRMLGEDRVVVYDHPGTTMDSIEI 222 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + P + DTAG+R+ I E+ E+ ++ K++Q+++ IV++DA +QDL Sbjct: 223 PYERNEKPYTLIDTAGVRRRKNIKEAAEKFSIVKALQAIQDANVCIVVIDAREGIVEQDL 282 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQ-DLRTKAI-KNLPQIGDIYINTISGRTGE 362 ++ V N+G +V+ALNKW D +++ Q D K + + L + ++ IS + G Sbjct: 283 TMLSFVLNSGKGLVIALNKW----DGMDIEQKDFVKKELERRLSFVDWADMHFISAKHGT 338 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 G+ L SV E K ++TS L L+ + + PP + R +L+Y Q +PP Sbjct: 339 GVGHLYESVDEAYKSAYMNLSTSQLTRILEDAVMDHQPPLVGGRRIKLRYAHQGGMNPPV 398 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 ++ +P+SYKRYL N R ++SG PIR F+S +NPY Sbjct: 399 IVVHGNKTASLPDSYKRYLANTFRKVLNISGTPIRFEFRSGENPY 443 >gi|227872320|ref|ZP_03990675.1| GTPase [Oribacterium sinus F0268] gi|227841827|gb|EEJ52102.1| GTPase [Oribacterium sinus F0268] Length = 440 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 151/459 (32%), Positives = 236/459 (51%), Gaps = 29/459 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTLFN + K++++V + PG+TRDR+Y + F +VDT GI Sbjct: 6 VAVVGRPNVGKSTLFNTIAGKQISIVQDTPGVTRDRIYAEGNWLNYYFTMVDTGGIEPIS 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 + + KQM Q ELAI A +I+F+ D K+G+ D+ + LR+ PI++ NK+D+ Sbjct: 66 DDVLLKQMRSQAELAIETADVIIFVTDVKSGVVDADYEVAEMLRRSKKPIVLCVNKVDSI 125 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + YE Y L E +SA + LG +L + K F Sbjct: 126 KKYGNDIYEFYQLGLGEPFPVSAANHLGLGDLLDEVVKHF-------------------- 165 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 PKE + E + L+IA++G+PNVGKS+L N+LLG NR++ +G TRD++ Sbjct: 166 -PKEGLEEEEDGT-------LKIALIGKPNVGKSSLTNKLLGENRVIVSDIAGTTRDAID 217 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + P DTAG+R+ ++TE +E+ +V +++ +V + IVL+DA D Sbjct: 218 TEVTYNGTPYIFIDTAGLRRKGKVTEDIERYSVIRTVAAVDRADICIVLIDAVEGITDGD 277 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 RI +G V++A+NKWD+V +Q+ + + + IS TG+ Sbjct: 278 TRIAGIAHESGKGVIIAVNKWDLVEKNDKTMQEFTKQLKEKFAYMDYAEYLFISAETGQR 337 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 + + V I+ RI T LN L + PP+ + +L YITQ +PP+F Sbjct: 338 IHKIYELVNMIHDNQVMRIKTGVLNEILARATAMKQPPSDKGKRLKLFYITQASVAPPTF 397 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 +IF + SY RY+ N++R NF G PIR + Sbjct: 398 VIFVNDRELMHFSYTRYIENQIRENFGFRGTPIRFIIRE 436 >gi|167031915|ref|YP_001667146.1| GTP-binding protein EngA [Pseudomonas putida GB-1] gi|189037155|sp|B0KPJ1|DER_PSEPG RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|166858403|gb|ABY96810.1| small GTP-binding protein [Pseudomonas putida GB-1] Length = 487 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 161/475 (33%), Positives = 249/475 (52%), Gaps = 23/475 (4%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ IA+VG PNVGKST+FNRL K + A+VG+ G+TRDR YG A G F ++DT GI Sbjct: 1 MVPVIALVGRPNVGKSTMFNRLTKTRDAIVGDLSGLTRDRQYGDATWQGRSFILIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 G + ++M +Q+ +AI EA +LFL+D++AG+T D I LRK+N I+V+NK Sbjct: 61 T-GDEVGMDEKMAEQSLMAIEEADYVLFLVDARAGMTAADQMIAEHLRKRNKSAILVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D E + + ++ G + L + H E+ Sbjct: 120 IDNIDPDVARAEFSPMGMGNAIPVAGSQGRGINALMEAVL--------GHLPRDAEDEAL 171 Query: 181 NEESPKENITSEGKSSVKNISKP-----LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQS 235 ++E +EG+ +V+ I P ++IA++GRPNVGKSTL+NR+LG R++ + Sbjct: 172 DQE------VAEGEEAVR-IPGPSEKDGIKIAIIGRPNVGKSTLVNRMLGEERVVVYDEP 224 Query: 236 GITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDA 295 G TRDS+ I + DTAG+RK +I E +E+ +V K++Q+++ I ++DA Sbjct: 225 GTTRDSIYIPFERDGEKYTFIDTAGVRKRGKIHEEVEKFSVVKTLQAIKDANVVIFVMDA 284 Query: 296 TIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINT 355 DL ++ G A+V+ALNKWD + ++T+ + L + I+ Sbjct: 285 REGVVDHDLNLLGFALEAGRAIVIALNKWDGMEPGERAY--VKTELERRLFFVDFADIHF 342 Query: 356 ISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQ 415 IS G G+ +L SV K TR TS L L+ ++ PP + R +L+Y Sbjct: 343 ISALHGTGVGNLYKSVQAAFKSAVTRWPTSRLTQILEDAVSEHQPPLVNGRRIKLRYAHL 402 Query: 416 IQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 ++PP +I IP+SY RYL N R L G PIR+ ++ +NP+ K Sbjct: 403 GGANPPLIVIHGNQTESIPKSYSRYLENTYRRVLKLVGTPIRIEYKGGENPFEGK 457 >gi|21231435|ref|NP_637352.1| GTP-binding protein EngA [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768511|ref|YP_243273.1| GTP-binding protein EngA [Xanthomonas campestris pv. campestris str. 8004] gi|188991681|ref|YP_001903691.1| GTP-binding protein EngA [Xanthomonas campestris pv. campestris str. B100] gi|26006714|sp|Q8P979|DER_XANCP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|81305517|sp|Q4UUM0|DER_XANC8 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|229807529|sp|B0RT56|DER_XANCB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|21113105|gb|AAM41276.1| GTP-binding protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573843|gb|AAY49253.1| GTP-binding protein [Xanthomonas campestris pv. campestris str. 8004] gi|167733441|emb|CAP51642.1| GTP-binding protein, probable [Xanthomonas campestris pv. campestris] Length = 465 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 155/472 (32%), Positives = 251/472 (53%), Gaps = 31/472 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVI-FNIVDTAG 59 M+ +A+VG PNVGKST+FN L + + A+V + PG+TRDR YG ++ F +VDT G Sbjct: 1 MLPLVALVGRPNVGKSTIFNALTRTRDALVHDQPGVTRDRNYGVCRLDEQQPFIVVDTGG 60 Query: 60 IADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 IA G +A Q A EA L+LF++D + G + D I ++LRK P ++V N Sbjct: 61 IA-GDEEGLAGATARQARAAAGEADLVLFVVDGREGASSLDDEILAWLRKLARPTVLVIN 119 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNK 179 K+D + E F ++V +SA H G +L + ++ E+++N+ Sbjct: 120 KIDGTDEESVRSEFSRYGFSDVVALSAAHRQGIDDLLEEVGARLPEEGAG---ELLDNDP 176 Query: 180 RNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITR 239 +RIA VGRPNVGKSTL+NRLLG R++ G TR Sbjct: 177 AR----------------------VRIAFVGRPNVGKSTLVNRLLGEERMIASEVPGTTR 214 Query: 240 DSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPF 299 DS+++ + DTAG+R+ ++ E++E+ + K++Q++ C+ +++LDAT Sbjct: 215 DSIAVDLERDGRQYRLIDTAGLRRRGKVEEAVEKFSAFKTLQAIEQCQVAVLMLDATEGV 274 Query: 300 EKQDLRIVDSVFNTGHAVVLALNKWDMVSD-KLNLLQDLRTKAIKNLPQIGDIYINTISG 358 QD I+ ++ + G A+V+A+NKWD SD + +DL ++ + + + I+ + Sbjct: 275 TDQDATILGAILDAGRALVVAINKWDGQSDYQRAQAEDLLSRKLGFVNWAEAVRISALH- 333 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 G G+ +L ++ + +TS +N L+ NPPP+I ++L+Y+ + Sbjct: 334 --GSGMRELFQAIHRAHASATHEFSTSEVNQALEIAYETNPPPSIRGHVSKLRYVHPGGA 391 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP+F++ T +PESYKRYL N R F L G P+R F+ NPY K Sbjct: 392 NPPTFIVHGTRLKVLPESYKRYLENFFRKRFKLVGTPVRFIFREGANPYEGK 443 >gi|88799909|ref|ZP_01115481.1| predicted GTPase [Reinekea sp. MED297] gi|88777340|gb|EAR08543.1| predicted GTPase [Reinekea sp. MED297] Length = 458 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 153/467 (32%), Positives = 249/467 (53%), Gaps = 29/467 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M IA+VG PNVGKSTLFNR + + A+V + G+TRDR YG + F ++DT G+ Sbjct: 1 MTPVIALVGRPNVGKSTLFNRFTRTRDALVADWSGLTRDRKYGDGKLGERPFIVIDTGGV 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + G + + M Q+ AI+EA +LFL+D ++GIT D + LRK + +V NK Sbjct: 61 S-GFEEGLDEAMARQSFAAIDEADAVLFLVDGQSGITSADSFLAEHLRKTQKSVTLVVNK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 D R + Y L E V I+A + G L + + F + P+E I+ Sbjct: 120 TDGRDPDVAVADFYELGLGEPVAIAASQNRGVRSLLEDVLEQFPE-----PIEQID---- 170 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 P E+ + +R+A++GRPNVGKSTL+NR+LG +R++ G T D Sbjct: 171 ----PMEDDS-------------IRLAIIGRPNVGKSTLVNRMLGEDRVVVYDHPGTTMD 213 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ I + + DTAG+R+ ITE++E+ ++ K++Q+++ ++++DA Sbjct: 214 SIYIPYERHGKAYTLIDTAGVRRRKNITEAVEKFSIVKTLQAIQDANVVVLVIDAQDGLV 273 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 QD+ ++ +G A+V+A+NKWD +S++ ++T + +P + ++ IS Sbjct: 274 DQDMHMLGFALESGRALVIAINKWDGLSEEKK--DSIKTAIDRRMPFLDWADMHFISALH 331 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G + L SV E +++ +T++L + +Q + PP + R +L+Y Q S+P Sbjct: 332 GTNVGHLYESVEEAYDGARSKWSTNHLTNLMQGVVEMHQPPMVGGRRIKLRYAHQGGSNP 391 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 P +I NK+P SYKRYL N R + G PIR F++ NPY Sbjct: 392 PIVVIHGNQLNKLPGSYKRYLENAFRKAMGVRGTPIRFEFRTGDNPY 438 >gi|52841771|ref|YP_095570.1| GTP-binding protein EngA [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|81823403|sp|Q5ZV99|DER_LEGPH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|52628882|gb|AAU27623.1| GTP-binding protein EngA [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 462 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 163/470 (34%), Positives = 247/470 (52%), Gaps = 31/470 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI IA+VG PNVGKSTLFNR+ K + A+V + PG+TRDR YG A F IVDT GI Sbjct: 1 MIPVIALVGRPNVGKSTLFNRITKTQDALVADFPGLTRDRQYGHAQHENKSFIIVDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + + M+ Q+++A+NEA++ILFL+D ++G+T D I LRK N + +V NK Sbjct: 61 GV-DDIEVDTLMSRQSQVALNEANVILFLVDGRSGLTGIDQQIAQALRKFNKKVHLVVNK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 D + SL +I ISA H G S L I + F Sbjct: 120 TDGMNEDIACADFQSLGITDIHAISASHGGGISSLLEEILEPF----------------- 162 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 T+E + + K ++IA GRPNVGKSTLINR+LG R++ G TRD Sbjct: 163 ---------TTETHEATDD--KAIKIAFAGRPNVGKSTLINRILGEERVVVYDMPGTTRD 211 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+SI + ++ + DTAG+R+ SRI E +E+ +V K++Q+++ ++LLDA Sbjct: 212 SISIPFTREDKQYVLIDTAGVRRKSRIDEKIEKFSVIKTLQAIKEAHVCLLLLDANEGIT 271 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 QD+ ++ + +G A+V+A+NKWD + + + + ++++ + L I IS Sbjct: 272 DQDMNLLGFIIESGKALVIAVNKWDGLEE--DHKEKIKSELSRRLHFANFAKIRFISALH 329 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G G+ L + E +T L LQ ++ PP I R +L+Y +P Sbjct: 330 GSGVGGLFKDINEAYHSAIQSFSTPKLTRLLQDISAKHTPPCINGRRIKLRYAHLGGHNP 389 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 P +I + +PESYKRYL N + L G P+++ F+ +NP+ K Sbjct: 390 PVIVIHGNQLDALPESYKRYLNNEFIKHLGLVGTPLKIEFKGGQNPFANK 439 >gi|326391582|ref|ZP_08213112.1| ribosome-associated GTPase EngA [Thermoanaerobacter ethanolicus JW 200] gi|325992364|gb|EGD50826.1| ribosome-associated GTPase EngA [Thermoanaerobacter ethanolicus JW 200] Length = 439 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 147/453 (32%), Positives = 249/453 (54%), Gaps = 30/453 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 ++IVG PNVGKSTLFN+++ K++++V + PG+TRDR+YG A F +VDT G+ Sbjct: 6 VSIVGRPNVGKSTLFNKIMGKRISIVEDKPGVTRDRIYGNAEWLDKKFILVDTGGLDPNA 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 + ++ Q E AI+ + +ILFL+D+K G+ P D I + LR+ +I+V NK+D+ Sbjct: 66 EDILFSKVRLQVEAAIDASDVILFLVDAKEGLMPEDEEIANILRRAKKEVILVCNKVDSF 125 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + +Y+ +SL + ISA + LG EL + K K P LE E Sbjct: 126 KEMPPTYYDFFSLGLGNPIPISASNGLGIGELLDEVVK----KLPQEELEYTEET----- 176 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 ++IAV+G+PNVGKS+L+N++LG R++ + G TRD++ Sbjct: 177 --------------------IKIAVIGKPNVGKSSLVNKILGEERVIVSNIPGTTRDAID 216 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 ++ + DTAG+R+ SRI+ES+E+ +V +++ ++ + ++++DAT +QD Sbjct: 217 TPFSKDGKNYVLIDTAGIRRKSRISESIERYSVLRALAAIERSDICLLMIDATEGPTEQD 276 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 +I F G +++ +NKWD + N + + + L I I IS +TG+ Sbjct: 277 TKIAGYAFENGKGIIIVVNKWDAIKKDNNTVNEYTKMVREKLSFISFAPILFISAKTGQR 336 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 + ++ +V ++ + + RITT LN+ L + L PPP + ++ Y +Q+ PPSF Sbjct: 337 VHRVLETVDKVWEEYNKRITTGLLNNVLNEAMLMFPPPADKGKPLKVYYTSQVGIKPPSF 396 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 ++F P + SY R++ N LR NF G+P+ Sbjct: 397 IVFVNEPELMHFSYLRFIENTLRQNFGFEGVPV 429 >gi|113868334|ref|YP_726823.1| GTP-binding protein EngA [Ralstonia eutropha H16] gi|113527110|emb|CAJ93455.1| GTP-binding protein [Ralstonia eutropha H16] Length = 456 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 156/469 (33%), Positives = 240/469 (51%), Gaps = 37/469 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTLFNR+ + + A+V + PG+TRDR YG+ I F +DT G Sbjct: 14 IALVGRPNVGKSTLFNRMTRSRDALVADLPGLTRDRHYGEGRIGERPFIAIDTGGFEPVV 73 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I +M QT+ A+ EA +++F++D + G+ P D AI +LRK I++ NK + Sbjct: 74 KEGIVAEMAKQTKQAVVEADVVIFIVDGRLGLAPQDRAIADYLRKTGRRIMLAVNKAEGM 133 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + Y L + ISA H G SEL ++ Q+ P + EE Sbjct: 134 KYTSVAADFYELGMGDPYAISAAHGDGVSELVDEAIELAVQERP----------ELGEEI 183 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P E K ++IA+VGRPNVGKSTL+N L+G R++ G TRD++ + Sbjct: 184 PDEG-------------KGVKIAIVGRPNVGKSTLVNTLIGEERVIAFDMPGTTRDAIYV 230 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + P + DTAG+R+ ++ E++E+ +V K++QS+ I+LLDA QD Sbjct: 231 EFERGGKPYTLIDTAGLRRRGKVFEAIEKFSVVKTLQSIADANVVILLLDAQQDISDQDA 290 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSD------KLNLLQDLRTKAIKNLPQIGDIYINTISG 358 I + +G A+V+ +NKWD + K +L + L+ + N + +S Sbjct: 291 HIAGFIVESGRALVVGVNKWDGLDGHTRDRIKHDLERKLQFLSFANF--------HFVSA 342 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 R G+ LM SV + ++ T L LQ+ P + +L+Y Q S Sbjct: 343 RERTGIGALMRSVDDAFAAAMVKLPTPQLTRVLQEAVEFQQPKRVGASRPKLRYAHQGGS 402 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 +PP +I + + E+Y+RYL NR R F L G P+R+ F+++KNPY Sbjct: 403 NPPIIVIHGNALSGVAETYRRYLENRFRTAFKLKGTPLRIEFRTNKNPY 451 >gi|212212370|ref|YP_002303306.1| GTP-binding protein EngA [Coxiella burnetii CbuG_Q212] gi|238058972|sp|B6IZN3|DER_COXB2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|212010780|gb|ACJ18161.1| GTP-binding protein [Coxiella burnetii CbuG_Q212] Length = 443 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 158/467 (33%), Positives = 244/467 (52%), Gaps = 30/467 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ IAIVG PNVGKSTLFN L K + A+V + PG+TRDR YG+ I+ +VDT G+ Sbjct: 1 MLPVIAIVGRPNVGKSTLFNYLTKSRAALVADVPGVTRDRQYGETTIDSQRLLLVDTGGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 D +N +A Q E AI+E+ ILFL+D+KAG+ P D I L KK I + NK Sbjct: 61 VDTENKEVAPLAETQVEQAIDESDCILFLVDAKAGLVPADEIIAERLHKKGKKIFLAVNK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 D A + Y L F E I+A G +L + + Sbjct: 121 ADRARAAVVQSDFYKLGFGEPYVIAAASGRGVKDLMTQVL-------------------- 160 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 E P+E E + +K IA++GRPNVGKSTLINRLLG R++ Q G TRD Sbjct: 161 -ENLPEEKEVIEKEVGIK-------IAMIGRPNVGKSTLINRLLGEERVIVYDQPGTTRD 212 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ I + + + DTAG+R+ ++I + +E+ ++ KS+Q++ + I LLDA Sbjct: 213 SIYIPFARNDENYTLIDTAGIRRRAKIQDYVEKFSMIKSLQAMHAADVVIFLLDARQGVT 272 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 +QDLR+++ + G ++++A+NKWD ++ + ++R + +P + IS Sbjct: 273 EQDLRLLNRIVEAGVSLIIAVNKWDGLN--IEERDNVRNAIDRRMPFVDFARRYFISALH 330 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G G+ L ++ E + + +TT L L+K ++ PP + R RL+Y P Sbjct: 331 GTGVGKLFRAIQESYQSIQQELTTGQLTRALEKAVAEHEPPLVKGRRIRLRYAHLGARHP 390 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 + ++ +P+SY RYL N R F+ G+P+ + ++ NPY Sbjct: 391 LTIVVHGKKTKSLPQSYSRYLANYFRKTFNFIGVPVHIKLKTDPNPY 437 >gi|115351797|ref|YP_773636.1| GTP-binding protein EngA [Burkholderia ambifaria AMMD] gi|170702835|ref|ZP_02893684.1| small GTP-binding protein [Burkholderia ambifaria IOP40-10] gi|171321331|ref|ZP_02910290.1| small GTP-binding protein [Burkholderia ambifaria MEX-5] gi|122323095|sp|Q0BEX1|DER_BURCM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|115281785|gb|ABI87302.1| small GTP-binding protein [Burkholderia ambifaria AMMD] gi|170132253|gb|EDT00732.1| small GTP-binding protein [Burkholderia ambifaria IOP40-10] gi|171093388|gb|EDT38576.1| small GTP-binding protein [Burkholderia ambifaria MEX-5] Length = 445 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 164/469 (34%), Positives = 246/469 (52%), Gaps = 32/469 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+ + + +VDT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGERPYLVVDTGGFEPVA 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I QM QT A+ EA +++F++D + G+ P D +I +LRK PI +V NK + Sbjct: 65 KDGILHQMARQTRQAVEEADVVVFIVDGRNGLAPQDKSIADYLRKTGRPIFLVVNKAEGM 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + Y L + ISA H G +++ I + + Y P E +E+ Sbjct: 125 KYTAVATDFYELGLGDPRAISAAHGDGVTDM---INEALEVAYAGQPEEA------DEDD 175 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P S+ ++IA+VGRPNVGKSTL+N L+G +R++ G TRDS+ + Sbjct: 176 P---------------SRGIKIAIVGRPNVGKSTLVNALIGEDRVIAFDMPGTTRDSIYV 220 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + DTAG+R+ ++ E++E+ +V K++QS+ I+LLDA QD Sbjct: 221 DFERNGKKYTLIDTAGLRRRGKVFEAIEKFSVVKTLQSISDANVVILLLDAQQDISDQDA 280 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSD--KLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 I V G A+V+ +NKWD + D + DL T+ +K L YI+ + +TG Sbjct: 281 HIAGFVVEQGRALVIGVNKWDGLDDHARDRAKADL-TRKLKFLDFAKSHYISA-AKKTGI 338 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWL-QKTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 G LM SV + ++ T L L + + Q P R +L+Y Q +PP Sbjct: 339 GA--LMRSVDDAYAAAMAKLPTPKLTRALIEAVEFQQPRRRGPVR-PKLRYAHQGGQNPP 395 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +I + + E+YKRYL NR R FSL+G P+R+ F+SS NPY K Sbjct: 396 LIVIHGNALDAVTETYKRYLENRFRETFSLTGTPLRIEFRSSNNPYADK 444 >gi|330957531|gb|EGH57791.1| GTP-binding protein Der [Pseudomonas syringae pv. maculicola str. ES4326] Length = 489 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 159/467 (34%), Positives = 248/467 (53%), Gaps = 11/467 (2%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ IA+VG PNVGKST+FNRL + + A+VG+ G+TRDR YG+A G + ++DT GI Sbjct: 1 MVPVIALVGRPNVGKSTMFNRLTRTRDAIVGDLSGLTRDRQYGEAKWQGRSYILIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + G + ++M Q+ LAI EA ++LFL+D++AG T D I LRK+N +V+NK Sbjct: 61 S-GDEHGMDEKMAKQSLLAIEEADVVLFLVDARAGYTAADQMIGEHLRKRNKRSYVVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D E + + + ++ H G S++ + F + +E Sbjct: 120 IDNIDENLARAEFSPMGLGDAIPVAGAHGRGISQMLEIALSEFPKDEDELEEGEVEEVAE 179 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 +E+ + SE K +K IA++GRPNVGKSTL+NR+LG +R++ + G TRD Sbjct: 180 GQEAKRIPGPSE-KDGIK-------IAIIGRPNVGKSTLVNRMLGEDRVIVYDEPGTTRD 231 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ I + + DTAG+RK +I E +E+ +V K++Q+++ I ++DA Sbjct: 232 SIYIPFERNEEKYTLIDTAGVRKRGKIHEEVEKFSVVKTLQAIKDANVVIFVMDAREGVV 291 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 DL ++ G A+V+ALNKWD ++ + + DI+ IS Sbjct: 292 DHDLNLLGFALEAGRALVIALNKWDGMTPGERDFVKIELERRLFFVDFADIHF--ISALH 349 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G G+ +L SV K TR TS L L+ ++ PP + +R +L+Y ++P Sbjct: 350 GTGVGNLYQSVQNSFKSAVTRWPTSRLTQILEDAVSEHAPPMVGSRRIKLRYAHLGGANP 409 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 P +I K+P+SY RYL N R L G PIR+ F+ +NPY Sbjct: 410 PLIVIHGNQVEKVPKSYVRYLENTYRRVLKLVGTPIRIEFKGGENPY 456 >gi|313203779|ref|YP_004042436.1| ribosome-associated GTPase enga [Paludibacter propionicigenes WB4] gi|312443095|gb|ADQ79451.1| ribosome-associated GTPase EngA [Paludibacter propionicigenes WB4] Length = 437 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 153/456 (33%), Positives = 241/456 (52%), Gaps = 30/456 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNRL K + A+V + G TRDR YG+ G F+++DT G Sbjct: 5 VAIVGRPNVGKSTLFNRLTKSRRAIVNDEAGTTRDRQYGKCEWEGREFSVIDTGGWVINS 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + ++ LAI EA +ILFL+D + GIT YD + LR + P+++VSNK DT Sbjct: 65 SDVFEGEIKRHVVLAIEEADVILFLVDIQNGITDYDLEVAQILRGQTKPVMLVSNKADTF 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 Q E Y L E ISA + LGT + + FK + + LE EE Sbjct: 125 EWQYGVAEFYKLGLGEPHMISAINGLGTGDFLDKLLTYFKPDFSDD-LE--------EEL 175 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P R AVVGRPN GKS++IN +G R + +G TRDS+ Sbjct: 176 P-------------------RFAVVGRPNAGKSSIINAFVGEERTIVTDIAGTTRDSIYT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 +N H + DTAG+RK +++ E LE +V +S++++ C+ I+++DAT E QDL Sbjct: 217 RFNKFGHDFYLVDTAGIRKKAKVNEDLEYYSVVRSIRAIENCDVCILMIDATRGIESQDL 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDK-LNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 I + ++ +NKWD++ +K N ++ + L D I S T + Sbjct: 277 NIFSLIQKNRKGFIVCVNKWDLIENKESNDIKKYEATIRERLAPFVDFPIIFTSATTKQR 336 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP-PS 422 + ++ + +E+ + + +I T+ LN ++ PPP + ++ R+KY+TQ+ ++ P+ Sbjct: 337 ILKVLETAVEVYENKQRKIPTAKLNEYMLPAIENYPPPALKGKFIRIKYVTQLPNTQIPT 396 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 FL F P + + Y+R+L N++R + +G PI++ Sbjct: 397 FLFFANLPQYVKDPYRRFLENKIRAKYDFTGTPIQI 432 >gi|300770935|ref|ZP_07080812.1| ribosome-associated GTPase EngA [Sphingobacterium spiritivorum ATCC 33861] gi|300762208|gb|EFK59027.1| ribosome-associated GTPase EngA [Sphingobacterium spiritivorum ATCC 33861] Length = 441 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 147/461 (31%), Positives = 230/461 (49%), Gaps = 30/461 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +AIVG PNVGKSTLFNRL + + A+V + G+TRDR Y A G F ++DT G Sbjct: 9 MANIVAIVGRPNVGKSTLFNRLTESRKAIVDDFSGVTRDRHYESAEWIGKKFTVIDTGGF 68 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 G + + + DQ +AI EA +I+F++D GIT D I LR+ P+ + +NK Sbjct: 69 VHGSDDVFEEAIRDQVYIAIEEASVIIFMVDVTTGITDLDDEIADILRRSTKPVYVAANK 128 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D + E Y+ EI IS+ GT EL + F Sbjct: 129 VDHAKLHHDSAEFYAFGLGEIYNISSATGSGTGELLDAVVSTF----------------- 171 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 + + S + +VGRPNVGKS+L N LLG +R + +G TRD Sbjct: 172 -------------EVEEEEESTLPKYTIVGRPNVGKSSLTNALLGKDRNIVTPVAGTTRD 218 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ I +N H + DTAGMR+ S++ E +E +V ++++++ + I++LDA E Sbjct: 219 SIRIHYNQFGHEFLLIDTAGMRRKSKVNEDIEFYSVMRTIKALEDSDVVILMLDAQDGIE 278 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 QD+ I V++ +NKWD++ +++ + + + D+ I S Sbjct: 279 AQDINIFHLAEKNKKGVMIVVNKWDLIEKDNKTMKEFEARIREKIAPFTDVPIVFTSVTE 338 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 + + + ++ + +I TS LN + + PPP I +Y ++KY+TQI Sbjct: 339 KQRIHKTLEVAAKVYQNKTKKIPTSKLNEVMLQVIENYPPPAIKGKYIKIKYVTQIPGRS 398 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 P F FC P I + YKRY+ N+LR NF G+PI++ F+ Sbjct: 399 PMFAFFCNLPQYIKDPYKRYVENKLRENFDFEGVPIQLYFR 439 >gi|119897222|ref|YP_932435.1| GTP-binding protein EngA [Azoarcus sp. BH72] gi|166224303|sp|A1K3Z3|DER_AZOSB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|119669635|emb|CAL93548.1| probable GTP-binding protein [Azoarcus sp. BH72] Length = 442 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 156/472 (33%), Positives = 241/472 (51%), Gaps = 33/472 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M TI +VG PNVGKSTLFNRL K + A+V + PG+TRDR YG + + +VDTAG Sbjct: 1 MKPTIVLVGRPNVGKSTLFNRLTKTRDALVADQPGLTRDRHYGVGRVGDRDYLVVDTAGF 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 I +M Q E AI EA ++LFL+D +AG TP+D I + LR+ P+++V NK Sbjct: 61 DPVAKDGIMHEMARQAEQAIAEADVLLFLVDGRAGRTPHDDQIAAHLRRAGRPVVVVVNK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + + ++L + +SA H G L ++ F + +E E+ Sbjct: 121 AEGLDRATVAADFHALGLGAPLAVSAAHGDGVKALVELVLAPFPA---DDEVEAAED--- 174 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 + P R+A+VGRPNVGKSTL+N LLG R++ G TRD Sbjct: 175 --------------------AGP-RVAIVGRPNVGKSTLVNTLLGEERVIAFDMPGTTRD 213 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 +++I + + DTAG+R+ ++ E++E+ +V K++Q+++ +++LDA Sbjct: 214 AIAIPFERGGKQYTLIDTAGLRRRGKVFEAVEKFSVIKTLQAIQEANVVVLVLDAAQDIS 273 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSD--KLNLLQDLRTKAIKNLPQIGDIYINTISG 358 QD I V +TG A+V+A+NKWD V D + L +D+ K L + + IS Sbjct: 274 DQDAHIAGFVLDTGRALVVAINKWDAVDDYRRARLKEDMARK----LAFLSFARFHQISA 329 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 EG+ L+ SV + ++T L +Q + PP + +L+Y Q Sbjct: 330 LRAEGIAALLKSVDGAYAAAMSNLSTPRLTRTMQAAVAKQAPPRHGSARPKLRYAHQGGM 389 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I + IP SY R+L F L G P+R+ F+++ NPY K Sbjct: 390 NPPVIVIHGNALDHIPNSYVRFLERTFMEAFKLQGTPLRIQFRTAHNPYATK 441 >gi|319794354|ref|YP_004155994.1| ribosome-associated GTPase enga [Variovorax paradoxus EPS] gi|315596817|gb|ADU37883.1| ribosome-associated GTPase EngA [Variovorax paradoxus EPS] Length = 447 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 148/467 (31%), Positives = 249/467 (53%), Gaps = 27/467 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTLFNRL + + A+V ++ G+TRDR YG + F ++DT G Sbjct: 5 VALVGRPNVGKSTLFNRLTQTRDAIVADYAGLTRDRHYGNGRLGKHEFIVIDTGGFEPDA 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I K+M QT A+ EA +++F++D++ G++ DH I + LR+ P ++ +NK + Sbjct: 65 GSGIYKEMAKQTRQAVAEADVVIFVVDAREGLSAQDHDIANELRRLGKPCVLAANKAEGM 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + Y L F ++ +SA H G +L + + PL + + + Sbjct: 125 HDGTKLVDFYELGFGDVHGVSAAHGQGMRDLVELALE---------PLNLPDPDD----- 170 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 ++ +++KP+++AV GRPNVGKSTLIN LG RL+ G TRD++S+ Sbjct: 171 ---------ETDEDDVNKPIKLAVAGRPNVGKSTLINTWLGEERLVAFDMPGTTRDAISV 221 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + E+ DTAG+R+ ++ E++E+ +V K++Q++ + ++LLDAT QD Sbjct: 222 PFERNGQRFELIDTAGLRRKGKVFEAIEKFSVVKTLQAIESANVVLLLLDATQGVTDQDA 281 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 I + +G AVV+A+NKWD V + ++ + LP + ++ IS +GL Sbjct: 282 HIAGYILESGRAVVIAINKWDAVDSYQR--EQIQRQIETRLPFLKFASLHFISAIKRQGL 339 Query: 365 DDLMVSVLEINKLWKTRITTSYLNS-WLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 + ++ + +K +++T L L+ Q Q P R +L+Y Q +PP Sbjct: 340 GPVWQAIAQAHKSATRKMSTPVLTRLLLEAVQFQAPQRGGMFR-PKLRYAHQGGMNPPVI 398 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +I + ++YKR+L R R F L G P+R+ F+SS+NP+ K Sbjct: 399 IIHGNSLEHVTDAYKRFLEGRFRKEFDLVGTPLRIQFKSSQNPFADK 445 >gi|291543597|emb|CBL16706.1| ribosome-associated GTPase EngA [Ruminococcus sp. 18P13] Length = 442 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 145/460 (31%), Positives = 243/460 (52%), Gaps = 31/460 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTLFN+L+ +++++V + PG+TRDR+Y + G F +VDT GI Sbjct: 6 VAVVGRPNVGKSTLFNKLIGQRLSIVEDTPGVTRDRIYSKCEWRGREFMVVDTGGIEPDT 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + I QM Q E+AI+ A +I+ + D + G+T D+A+ L+K P+++ NK DT Sbjct: 66 DDVILAQMRRQAEVAIHRADVIVLVTDVRCGVTANDYAVADMLQKSGKPVVLAVNKCDT- 124 Query: 125 IAQ--RNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 I + YE Y+L E IS++H GT ++ I K + + Sbjct: 125 IGEPPLELYEFYNLGIGEPFPISSQHGHGTGDMLDEILKYLPET--------------DA 170 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 E E+ +++AV+G+PN GKS+LIN++ G R++ +G TRD+ Sbjct: 171 EDYDEDC--------------IKVAVIGKPNAGKSSLINKIAGEERVIVSDIAGTTRDAT 216 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + DTAG+RK SRITE +E +V ++ +V + I+++DA F +Q Sbjct: 217 DTVVENEQGKFVFIDTAGIRKKSRITERVEHFSVLRAYMAVDRADVCIIMIDAQTGFTEQ 276 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D ++ G A ++A+NKWD++ N +++ + K K+ + + IS +TG+ Sbjct: 277 DSKVAGYAHEQGKASIIAVNKWDLIEKDTNTMKEFQEKLEKDFSFMSYVPFVFISAKTGQ 336 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 ++ L + + RI+T LN L + PP+ R ++ Y+TQ+ + PP+ Sbjct: 337 RVNKLFEMIHFVANQNAIRISTGTLNDVLAYATTRVQPPSDKGRRLKIYYMTQVSTKPPT 396 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 F+ F + SY+RY+ N++R F L+G PIR + Sbjct: 397 FVTFVNRADLFHFSYQRYIENQIRTTFGLTGTPIRFVIRE 436 >gi|307267081|ref|ZP_07548594.1| ribosome-associated GTPase EngA [Thermoanaerobacter wiegelii Rt8.B1] gi|306917912|gb|EFN48173.1| ribosome-associated GTPase EngA [Thermoanaerobacter wiegelii Rt8.B1] Length = 439 Score = 260 bits (664), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 147/453 (32%), Positives = 249/453 (54%), Gaps = 30/453 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 ++IVG PNVGKSTLFN+++ K++++V + PG+TRDR+YG A F +VDT G+ Sbjct: 6 VSIVGRPNVGKSTLFNKIMGKRISIVEDKPGVTRDRIYGNAEWLDKKFILVDTGGLDPNA 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 + ++ Q E AI+ + +ILFL+D+K G+ P D I + LR+ +I+V NK+D+ Sbjct: 66 EDILFSKVRLQVEAAIDASDVILFLVDAKEGLMPEDEEIANILRRAKKEVILVCNKVDSF 125 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + +Y+ +SL + ISA + LG EL + K K P LE E Sbjct: 126 KEMPPTYYDFFSLGLGNPIPISASNGLGIGELLDEVVK----KLPQEELEYTEET----- 176 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 ++IAV+G+PNVGKS+L+N++LG R++ + G TRD++ Sbjct: 177 --------------------IKIAVIGKPNVGKSSLVNKILGEERVIVSNIPGTTRDAID 216 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 ++ + DTAG+R+ SRI+ES+E+ +V +++ ++ + ++++DAT +QD Sbjct: 217 TPFSKDGKNYVLIDTAGIRRKSRISESIERYSVLRALAAIERSDICLLMIDATEGPTEQD 276 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 +I F G +++ +NKWD + N + + + L I I IS +TG+ Sbjct: 277 TKIAGYAFENGKGIIIVVNKWDAIKKDNNTVNEYTKMVREKLSFISFAPILFISAKTGQR 336 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 + ++ +V ++ + + RITT LN+ L + L PPP + ++ Y +Q+ PPSF Sbjct: 337 VHRVLETVDKVWEEYNKRITTGLLNNVLNEAMLMFPPPADKGKPLKVYYTSQVGIKPPSF 396 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 ++F P + SY R++ N LR NF G+P+ Sbjct: 397 VVFVNEPELMHFSYLRFIENTLRQNFGFEGVPV 429 >gi|325919426|ref|ZP_08181452.1| small GTP-binding protein domain/GTP-binding conserved hypothetical protein [Xanthomonas gardneri ATCC 19865] gi|325550092|gb|EGD20920.1| small GTP-binding protein domain/GTP-binding conserved hypothetical protein [Xanthomonas gardneri ATCC 19865] Length = 465 Score = 260 bits (664), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 157/473 (33%), Positives = 251/473 (53%), Gaps = 33/473 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVI-FNIVDTAG 59 M+ +A+VG PNVGKST+FN L + + A+V + PG+TRDR YG ++ F +VDT G Sbjct: 1 MLPLVALVGRPNVGKSTIFNALTRTRDALVHDQPGVTRDRNYGVCRLDEERPFIVVDTGG 60 Query: 60 IADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 IA G +A Q A EA L+LF++D + G + D I ++LRK P ++V N Sbjct: 61 IA-GDEEGLAGATARQARAAAGEADLVLFVVDGREGASSLDDEILAWLRKLARPTVLVIN 119 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNK 179 K+D + E F ++V +SA H G EL LE + Sbjct: 120 KIDGTDEETVRSEFARYGFSDVVALSAAHRQGIDEL----------------LEEV---- 159 Query: 180 RNEESPKENITSEGKSSVKNISKP-LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 + +EG + + +RIA VGRPNVGKSTL+NRLLG R++ G T Sbjct: 160 ------GARLPAEGAGELLDTDPARVRIAFVGRPNVGKSTLVNRLLGEERMIASEVPGTT 213 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RDS+++ + + DTAG+R+ ++ E++E+ + K++Q++ C+ +++LDA Sbjct: 214 RDSIAVDMDRDGRQYRLIDTAGLRRRGKVEEAVEKFSAFKTLQAIEQCQVAVLMLDAGEG 273 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSD-KLNLLQDLRTKAIKNLPQIGDIYINTIS 357 QD I+ ++ + G A+V+A+NKWD SD + +DL ++ + + + I+ + Sbjct: 274 VTDQDATILGAILDAGRALVVAINKWDGQSDYQRAQAEDLLSRKLGFVSWAEAVRISALH 333 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 G G+ +L ++ + +TS +N L+ NPPP+I ++L+Y+ Sbjct: 334 ---GSGMRELFQAIHRAHASATHEFSTSEVNQALEIAYETNPPPSIRGHVSKLRYVHPGG 390 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 ++PP+F++ T +PESYKRYL N R F L G P+R F+ NPY K Sbjct: 391 ANPPTFIVHGTRLKVLPESYKRYLENFFRKRFKLVGTPVRFIFREGANPYEGK 443 >gi|293604545|ref|ZP_06686950.1| GTP-binding protein EngA [Achromobacter piechaudii ATCC 43553] gi|292817126|gb|EFF76202.1| GTP-binding protein EngA [Achromobacter piechaudii ATCC 43553] Length = 454 Score = 260 bits (664), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 155/469 (33%), Positives = 249/469 (53%), Gaps = 25/469 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTLFNRL + + A+V + G+TRDR YG+ + + F +DT G Sbjct: 7 VALVGRPNVGKSTLFNRLTRSRAALVADFSGLTRDRHYGEGRVGEIPFIAIDTGGFEPVA 66 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIP-IIIVSNKMDT 123 I +M QT AI EA +++FL+D++AG+ +DH I LRK +++ NK + Sbjct: 67 KDGILLEMARQTRQAIAEADVVVFLVDARAGLNAHDHEIAQLLRKSGQQRVLLAVNKAEG 126 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 E + L + ISA H G +L + K + P E E Sbjct: 127 MGLGPAISEFHELGLGQPYPISAAHGDGIVDLIELALKDLAE--PPAEAEPFE------- 177 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 EG+ +++ + +++A+VGRPNVGKSTLIN L+G R++ G TRD++ Sbjct: 178 --------EGEGDLEHDHR-IKLAIVGRPNVGKSTLINTLMGEERVIAFDLPGTTRDAIE 228 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 I ++ + DTAG+RK ++ E++E+ +V K++Q++ +++LDA +QD Sbjct: 229 IDFDRDGRRYTLIDTAGLRKRGKVFEAVEKFSVIKTLQAIEASNVVLLMLDAHTEISEQD 288 Query: 304 LRIVDSVFNTGHAVVLALNKWDMV--SDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTG 361 I V TG AVV+A+NKWD + +K + ++ + K L + ++TIS G Sbjct: 289 AHIAGFVLETGRAVVVAINKWDGLDGEEKERIEREFQRK----LRFLSFARVHTISALRG 344 Query: 362 EGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 +G+ L+ S+ + +++T L LQ Q PP +++Y Q +PP Sbjct: 345 QGIKPLLKSINSAHAAAFAKLSTPKLTRELQAAIEQQQPPRKGIFRPKMRYAHQGGQNPP 404 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +I + IP+SY+RYL R R F L+G P+R+ F+SS NPY ++ Sbjct: 405 LVVIHGNALDAIPDSYRRYLETRFRNAFDLAGTPLRIEFKSSHNPYAQE 453 >gi|54297453|ref|YP_123822.1| GTP-binding protein EngA [Legionella pneumophila str. Paris] gi|148359075|ref|YP_001250282.1| GTP-binding protein EngA [Legionella pneumophila str. Corby] gi|296107123|ref|YP_003618823.1| GTP-binding protein EngA [Legionella pneumophila 2300/99 Alcoy] gi|81822576|sp|Q5X522|DER_LEGPA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|166225822|sp|A5IC36|DER_LEGPC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|53751238|emb|CAH12649.1| hypothetical protein lpp1498 [Legionella pneumophila str. Paris] gi|148280848|gb|ABQ54936.1| GTP-binding protein EngA [Legionella pneumophila str. Corby] gi|295649024|gb|ADG24871.1| GTP-binding protein EngA [Legionella pneumophila 2300/99 Alcoy] Length = 462 Score = 260 bits (664), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 162/470 (34%), Positives = 247/470 (52%), Gaps = 31/470 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI IA+VG PNVGKSTLFNR+ K + A+V + PG+TRDR YG A F IVDT GI Sbjct: 1 MIPVIALVGRPNVGKSTLFNRITKTQDALVADFPGLTRDRQYGHAQHENKSFIIVDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + + M+ Q+++A+NEA++ILFL+D ++G+T D I LRK N + +V NK Sbjct: 61 GV-DDIEVDTLMSRQSQVALNEANVILFLVDGRSGLTGIDQQIAQALRKLNKKVHLVVNK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 D + SL ++ ISA H G S L I + F Sbjct: 120 TDGMNEDIACADFQSLGITDVHAISASHGGGISSLLEEILEPF----------------- 162 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 T+E + + K ++IA GRPNVGKSTLINR+LG R++ G TRD Sbjct: 163 ---------TTETHEATDD--KAIKIAFAGRPNVGKSTLINRILGEERVVVYDMPGTTRD 211 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+SI + ++ + DTAG+R+ SRI E +E+ +V K++Q+++ ++LLDA Sbjct: 212 SISIPFTREDKQYVLIDTAGVRRKSRIDEKIEKFSVIKTLQAIKEAHVCLLLLDANEGIT 271 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 QD+ ++ + +G A+V+A+NKWD + + + + ++++ + L I IS Sbjct: 272 DQDMNLLGFIIESGKALVIAVNKWDGLEE--DHKEKIKSELSRRLHFANFAKIRFISALH 329 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G G+ L + E +T L LQ ++ PP I R +L+Y +P Sbjct: 330 GSGVGGLFKDINEAYHSAIQSFSTPKLTRLLQDISAKHTPPCINGRRIKLRYAHLGGHNP 389 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 P +I + +PESYKRYL N + L G P+++ F+ +NP+ K Sbjct: 390 PVIVIHGNQLDALPESYKRYLNNEFIKHLGLVGTPLKIEFKGGQNPFANK 439 >gi|189462216|ref|ZP_03011001.1| hypothetical protein BACCOP_02899 [Bacteroides coprocola DSM 17136] gi|189431069|gb|EDV00054.1| hypothetical protein BACCOP_02899 [Bacteroides coprocola DSM 17136] Length = 437 Score = 260 bits (664), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 161/454 (35%), Positives = 241/454 (53%), Gaps = 30/454 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNRL K + A+V G TRDR YG++ G F++VDT G Sbjct: 5 VAIVGRPNVGKSTLFNRLTKTRQAIVNEQAGTTRDRQYGKSEWLGKEFSVVDTGGWVVNS 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +++ Q LAI+EA ++LF++D G+T D + S LR+ P+I+V+NK D Sbjct: 65 EDIFEEEIRKQVVLAIDEADVVLFVVDVTNGVTDLDMQVASILRRAKTPVIVVANKTDNN 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 Q N E YSL + ISA GT +L +I FK K ++E Sbjct: 125 DLQYNAAEFYSLGLGDPYCISALSGSGTGDLLDLIVSKFK--------------KESDEI 170 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 E+I R AVVGRPN GKS+++N +G R + +G TRDS+ Sbjct: 171 LDEDIP--------------RFAVVGRPNAGKSSIVNAFIGEERNIVTEIAGTTRDSIYT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 ++ + DTAG+RK ++++E LE +V +S++S+ + I++LDAT E QDL Sbjct: 217 RYDKFGFDFYLVDTAGIRKKNKVSEDLEYYSVVRSIRSIENSDVCILMLDATRGIEGQDL 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKN-LPQIGDIYINTISGRTGEG 363 I + +V+ +NKWD+V +K + +AI+N D I S T + Sbjct: 277 NIFSLIQRNQKGLVVVVNKWDLVEEKTAKVMKNYEEAIRNRFAPFTDFPIIFASALTKQR 336 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP-PS 422 + ++ + E+ + TRI T+ LN L PPP+ +Y ++KYITQ+ ++ PS Sbjct: 337 IFKVLEAAKEVYQARTTRIPTARLNEELLPMIEAYPPPSNKGKYIKIKYITQLPNTQVPS 396 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 F+ F P + E YKR+L N++R + LSG PI Sbjct: 397 FVFFANLPQYVKEPYKRFLENQIRERWKLSGTPI 430 >gi|326560782|gb|EGE11149.1| GTP-binding protein EngA [Moraxella catarrhalis 103P14B1] gi|326563523|gb|EGE13782.1| GTP-binding protein EngA [Moraxella catarrhalis 12P80B1] Length = 472 Score = 259 bits (663), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 153/473 (32%), Positives = 249/473 (52%), Gaps = 40/473 (8%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA-- 61 +A++G PNVGKSTLFN+L K + A+V + G+TRDR YG A F +VDT GI Sbjct: 6 VVALIGRPNVGKSTLFNQLTKSRQALVADLAGLTRDRQYGDAHFENKSFIVVDTGGIGEM 65 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 D + +I M Q+ AI+EA +++F++D++AG+ D I FL P+ +V+NKM Sbjct: 66 DDGSGNIDDYMATQSYTAIHEADIVVFVVDARAGLIGADSEIAHFLHTLGKPVFLVANKM 125 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D + + + E ++L F E +A H G + L + + P L+ Sbjct: 126 DG-VHEAAYAEFFALGFGEPYATAASHGRGVTNLLESLTADMPEDMPEDELD-------- 176 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 K L++A++GRPNVGKSTL+NRLLG +R++ G TRDS Sbjct: 177 -------------------GKALKLAIIGRPNVGKSTLVNRLLGEDRVVVFDMPGTTRDS 217 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 + I + + + DTAG+R+ RI E +E+ +V K++Q+++ +V++DA Sbjct: 218 IYIPFEREGRSYVLIDTAGVRRRGRIDEKVEKFSVVKTLQAIKDANVVVVVIDAKEGIVD 277 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVS----DKLNLLQDLRTKAIKNLPQIGDIYINTIS 357 QDL ++ + G A+V+A+NKWD +S D + + D R + P + I+ IS Sbjct: 278 QDLHMLGYALDAGRAIVVAINKWDGLSQDQKDSVKIEIDRRFNFV---PW---VKIHLIS 331 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 G G+ L S+ + + +++T+ L L+ +PPP + R +L+Y Sbjct: 332 ALYGNGVGKLYPSIHKAYEASMFKVSTNQLTRILEDAVASHPPPMVGGRRIKLRYAHLGG 391 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I + +P+SY+RYL N R + L G P+++ F+ + NPY K Sbjct: 392 HNPPVIVIHGNQTSSLPKSYQRYLENVFRNVYKLEGTPLQVEFKQNANPYEGK 444 >gi|323703070|ref|ZP_08114725.1| ribosome-associated GTPase EngA [Desulfotomaculum nigrificans DSM 574] gi|323531964|gb|EGB21848.1| ribosome-associated GTPase EngA [Desulfotomaculum nigrificans DSM 574] Length = 442 Score = 259 bits (663), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 152/455 (33%), Positives = 245/455 (53%), Gaps = 30/455 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKS LFNR+V ++A+V + PG+TRDRLY A G F +VDT G+ D Sbjct: 6 VAIVGRPNVGKSMLFNRIVGSRIAIVEDMPGVTRDRLYQDAEWQGREFTLVDTGGL-DFA 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 I Q+ Q ELA+ EA ++F++D++AG+T D + LR + P+++ +NK++ Sbjct: 65 EDVITSQIRKQAELAMREADAVIFVVDARAGLTTTDEEVAKVLRLTDKPVLLAANKVEQF 124 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 +A+ +Y+ Y L + + ISA L T +L + K+ ++ EE Sbjct: 125 DLAKIPYYDFYRLGLGDPIPISAAEGLNTGDLLDELVKLLPEQ---------------EE 169 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 P T +RIAV+GRPNVGKS+L+N +LG R++ + G TRD++ Sbjct: 170 DPYPPDT-------------IRIAVIGRPNVGKSSLVNAILGEERVIVSNIPGTTRDAID 216 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + I DTAGMR+ +RI E+ +V ++++++ C+ ++LLDAT +QD Sbjct: 217 SPFERNGKSYVIVDTAGMRRRNRIDLPAERYSVVRALRAIDRCDVALMLLDATEGVTEQD 276 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 RIV G A++L +NKWD++ + K + L + IS T + Sbjct: 277 KRIVGYAHEKGKAIILVVNKWDLIEKDDKTMNKFEKKIREELSFLSYAPTLYISALTKQR 336 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 + ++ V + + RI T+ LN+ +++ PPP ++ ++ Y TQ PP+F Sbjct: 337 VPKVLEMVDFVAEQAGRRIPTADLNNLIREATQATPPPGDKHKKLKIFYATQGGVKPPTF 396 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 ++F P + SY+RYL N+LR N+ G PIR+ Sbjct: 397 ILFVNEPELMHFSYERYLENQLRENYGFEGTPIRI 431 >gi|311068799|ref|YP_003973722.1| GTP-binding protein EngA [Bacillus atrophaeus 1942] gi|310869316|gb|ADP32791.1| GTP-binding protein EngA [Bacillus atrophaeus 1942] Length = 436 Score = 259 bits (663), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 146/460 (31%), Positives = 242/460 (52%), Gaps = 29/460 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST+FNR+ +++++V + PG+TRDR+Y A FN++DT GI G Sbjct: 6 VAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIG- 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + Q+ Q E+A++EA +I+F+++ + G+T D + L + P+++ NK+D Sbjct: 65 DEPFMTQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNT 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + N Y+ YSL F E IS H LG +L + FK I K NEE Sbjct: 125 EMRANVYDFYSLGFGEPYPISGTHGLGLGDLLDAAAEHFKN---------IPETKYNEEV 175 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 ++ ++GRPNVGKS+L+N +LG R++ + +G TRD+V Sbjct: 176 -------------------VQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 +++ I DTAGMRK ++ E+ E+ +V ++++++ E V+LD +QD Sbjct: 217 MFSYNQQDFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDK 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 RI G AVV+ +NKWD V +++ + + I +S T + + Sbjct: 277 RIAGYAHEAGKAVVIVVNKWDAVDKDERTMKEFEQNIRDHFQFLDYAPILFMSALTTKRI 336 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 LM ++++ ++ R+ T+ LN + NP PT + ++ Y TQ+ PPSF+ Sbjct: 337 HTLMPAIIKASENHSLRVQTNVLNDIIMDAVAMNPTPTHNGQRLKIYYATQVAVKPPSFV 396 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 +F P + SY+R+L NR+R F G PI++ ++ K Sbjct: 397 VFVNDPELMHFSYERFLENRIRDAFDFEGTPIKIFARARK 436 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 53/187 (28%), Positives = 91/187 (48%), Gaps = 15/187 (8%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI- 60 + ++G PNVGKS+L N ++ ++ +V N G TRD + N F IVDTAG+ Sbjct: 175 VVQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTMFSYNQQDFVIVDTAGMR 234 Query: 61 ADGKNCSIAKQMNDQTEL-AINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 GK ++ + L AI+ + ++ ++D + GI D I + + ++IV N Sbjct: 235 KKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVN 294 Query: 120 KMDT--------RIAQRNFYEIYS-LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNH 170 K D + ++N + + LD+ I+ +SA L T +H+++ I K NH Sbjct: 295 KWDAVDKDERTMKEFEQNIRDHFQFLDYAPILFMSA---LTTKRIHTLMPAIIKAS-ENH 350 Query: 171 PLEMIEN 177 L + N Sbjct: 351 SLRVQTN 357 >gi|71735846|ref|YP_273582.1| GTP-binding protein EngA [Pseudomonas syringae pv. phaseolicola 1448A] gi|257487194|ref|ZP_05641235.1| GTP-binding protein EngA [Pseudomonas syringae pv. tabaci ATCC 11528] gi|123637657|sp|Q48LZ0|DER_PSE14 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|71556399|gb|AAZ35610.1| GTP-binding protein engA [Pseudomonas syringae pv. phaseolicola 1448A] gi|320322917|gb|EFW79007.1| GTP-binding protein EngA [Pseudomonas syringae pv. glycinea str. B076] gi|320329960|gb|EFW85948.1| GTP-binding protein EngA [Pseudomonas syringae pv. glycinea str. race 4] gi|330985018|gb|EGH83121.1| GTP-binding protein Der [Pseudomonas syringae pv. lachrymans str. M301315] gi|331009189|gb|EGH89245.1| GTP-binding protein Der [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 490 Score = 259 bits (663), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 156/467 (33%), Positives = 244/467 (52%), Gaps = 10/467 (2%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ IA+VG PNVGKST+FNRL + + A+VG+ G+TRDR YG+A G + ++DT GI Sbjct: 1 MVPVIALVGRPNVGKSTMFNRLTRTRDAIVGDLSGLTRDRQYGEAKWQGRSYILIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + G + ++M +Q+ LAI EA ++LFL+D++AG T D I LRK+N +V+NK Sbjct: 61 S-GDEHGMDEKMAEQSLLAIEEADVVLFLVDARAGYTAADQMIGEHLRKRNKRSYVVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D E + + + ++ H G S++ + + F + Sbjct: 120 IDNIDENLARAEFSPMGLGDAIPVAGAHGRGISQMLEIALREFPKDEDELEEGEEVEEVA 179 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 + K K +K IA++GRPNVGKSTL+NR+LG +R++ + G TRD Sbjct: 180 EGQEAKRIPGPSEKDGIK-------IAIIGRPNVGKSTLVNRMLGEDRVIVYDEPGTTRD 232 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ I + + DTAG+RK +I E +E+ +V K++Q+++ I ++DA Sbjct: 233 SIYIPFERNEEKYTLIDTAGVRKRGKIHEEVEKFSVVKTLQAIKDANVVIFVMDAREGVV 292 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 DL ++ G A+V+ALNKWD ++ + + DI+ IS Sbjct: 293 DHDLNLLGFALEAGRALVIALNKWDGMTPGERDFVKIELERRLFFVDFADIHF--ISAMH 350 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G G+ +L SV K TR TS L L+ ++ PP + +R +L+Y ++P Sbjct: 351 GTGVGNLYQSVQNSFKSAVTRWPTSRLTQILEDAVSEHAPPMVGSRRIKLRYAHLGGANP 410 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 P +I K+P+SY RYL N R L G PIR+ F+ +NPY Sbjct: 411 PLIVIHGNQVEKVPKSYVRYLENTYRRVLKLVGTPIRIEFKGGENPY 457 >gi|300312253|ref|YP_003776345.1| GTP-binding protein [Herbaspirillum seropedicae SmR1] gi|300075038|gb|ADJ64437.1| GTP-binding protein [Herbaspirillum seropedicae SmR1] Length = 447 Score = 259 bits (663), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 159/468 (33%), Positives = 248/468 (52%), Gaps = 29/468 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+ + F ++DT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGERPFLVIDTGGFEPVA 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I +M QT+ A+ EA +++F++D + G+TP+D IT FLRK P+++V NK + Sbjct: 65 KDGIMYEMAKQTKQAVVEADVVVFIVDGRQGLTPHDKTITDFLRKCGRPVLLVVNKSEGM 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + Y L + ISA H G ++L + L++ E + E Sbjct: 125 KYTSVTADFYELGMGDPYVISAAHGDGVADLVT------------EALDVAEAQRTPEPE 172 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P+E ++V+ +IA+VGRPNVGKSTL+N LLG R++ G TRDS+ I Sbjct: 173 PEE-------TAVRGT----KIAIVGRPNVGKSTLVNTLLGEERVIAFDMPGTTRDSIEI 221 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + + DTAG+R+ ++ E++E+ +V K+++S+ ++LLDA +QD Sbjct: 222 PFEREGRHYTLIDTAGIRRRGKVFEAIEKFSVVKTLKSISDANVVLLLLDAQQDISEQDA 281 Query: 305 RIVDSVFNTGHAVVLALNKWD-MVSDKLNLLQ-DLRTKAIKNLPQIGDIYINTISGRTGE 362 I V +G A+V+ +NKWD M SD+ N ++ DL K N + IS Sbjct: 282 HIAGFVLESGRALVVGVNKWDGMESDQRNQIKMDLERKL--NFLSFAKFHF--ISALKST 337 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 G+ LM S+ +++T L L++ P + +L+Y Q +PP Sbjct: 338 GIGPLMKSIDSAYAAAMAKLSTPRLTRALEEALEHQQPRRKGSIRPKLRYAHQGGQNPPV 397 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +I I ++YKRYL R FSL G P+R+ F+S KNP+I++ Sbjct: 398 VVIHGNALEAIDDNYKRYLEKHFRETFSLVGTPLRIEFRSGKNPFIRQ 445 >gi|269792400|ref|YP_003317304.1| small GTP-binding protein [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100035|gb|ACZ19022.1| small GTP-binding protein [Thermanaerovibrio acidaminovorans DSM 6589] Length = 443 Score = 259 bits (663), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 148/460 (32%), Positives = 248/460 (53%), Gaps = 30/460 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKS+LFNRL+ +K+A+V + PG+TRDRLY + +G F +VDT GI Sbjct: 4 VAIVGRPNVGKSSLFNRLIGRKLAIVEDIPGVTRDRLYAETEWDGKRFYLVDTGGIESAS 63 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + Q ++A+ E +++FL+D K G+T D AI LR+ + P+I+ NK+D Sbjct: 64 PHPFQDVIARQVQMALKECDVVIFLLDGKEGVTAGDEAIAEMLRRSSKPVIVAMNKIDNP 123 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSE-LHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + N + YSL F ++ IS EH +G + L SV+ + + P+ Sbjct: 124 KREDNVLDAYSLGFHTVMGISVEHGIGIGDLLDSVVSALPDEGEPDG------------- 170 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 T +G ++++VVGRPNVGKS+L NRL+G R + G TRD+V Sbjct: 171 ------TDDGV---------IKLSVVGRPNVGKSSLFNRLIGQERAVVSPIPGTTRDTVD 215 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + + + + DTAGMR+ SR+ + LE +V ++++++ + ++VL+DAT +QD Sbjct: 216 VDVRLGDVDVRLMDTAGMRRKSRVDDPLEYYSVVRTLKAIDRSDVSLVLMDATELLTEQD 275 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 R++ V G +++ +NKWD++ + +L +R + +P + + +S +TG G Sbjct: 276 KRLMLHVEERGKGLIIGVNKWDLLPPREDLGDVIRDQIRDQMPTLSYAPLIFLSAKTGRG 335 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKT-QLQNPPPTIFNRYNRLKYITQIQSSPPS 422 + L V + + + R+ TS LN L+ T + + P RY ++ Y TQ + PP+ Sbjct: 336 VHRLPPLVSRVYENRRRRLKTSDLNRLLRDTLEFERMPGDGKGRYLKVYYATQADTVPPT 395 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 F+ F + S+ R L +R G P+R+ F++ Sbjct: 396 FIFFVNDRDLADRSFTRRLEKHIRALGDFEGSPVRIWFRN 435 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 44/176 (25%), Positives = 87/176 (49%), Gaps = 11/176 (6%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + +++VG PNVGKS+LFNRL+ ++ AVV PG TRD + + V ++DTAG+ Sbjct: 175 VIKLSVVGRPNVGKSSLFNRLIGQERAVVSPIPGTTRDTVDVDVRLGDVDVRLMDTAGMR 234 Query: 62 DGKNCSIAKQMND--QTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 + +T AI+ + + L L+D+ +T D + + ++ +II N Sbjct: 235 RKSRVDDPLEYYSVVRTLKAIDRSDVSLVLMDATELLTEQDKRLMLHVEERGKGLIIGVN 294 Query: 120 KMDTRIAQRNFYEIY---------SLDFKEIVEISAEHDLGTSELHSVIFKIFKQK 166 K D + + ++ +L + ++ +SA+ G L ++ ++++ + Sbjct: 295 KWDLLPPREDLGDVIRDQIRDQMPTLSYAPLIFLSAKTGRGVHRLPPLVSRVYENR 350 >gi|260578662|ref|ZP_05846570.1| ribosome-associated GTPase EngA [Corynebacterium jeikeium ATCC 43734] gi|258603159|gb|EEW16428.1| ribosome-associated GTPase EngA [Corynebacterium jeikeium ATCC 43734] Length = 777 Score = 259 bits (663), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 151/464 (32%), Positives = 247/464 (53%), Gaps = 40/464 (8%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI- 60 + T+AIVG PNVGKSTL NR + ++ AVV + PG+TRDR+ +G F + DT G Sbjct: 342 LCTVAIVGRPNVGKSTLVNRFIGRREAVVEDFPGVTRDRISYLGEWSGRRFWVQDTGGWD 401 Query: 61 --ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVS 118 A G + +IA+Q E A+ A +I+F++DSK GIT D I L++ +P+I+V+ Sbjct: 402 PDAKGIHAAIARQ----AETAMETADVIVFVVDSKVGITSTDEVIARKLQRSKVPVIVVA 457 Query: 119 NKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 NK D + E ++L +SA+H G +++ + ++F P HP E+ Sbjct: 458 NKCDADAQLGDVAEFWALGLDNPYPVSAQHGKGAADVMDEVLRVF----PEHPREL---- 509 Query: 179 KRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 SV +S P R+A+VGRPNVGKS+L+N++ G R + + +G T Sbjct: 510 -----------------SV--VSGPRRVALVGRPNVGKSSLLNKITGEERSVVNNVAGTT 550 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 D V + + DTAG+RK ++ E ++ ++ E + L+DA+ P Sbjct: 551 VDPVDSIVELEEKTWKFVDTAGIRKKTKQARGHEFYASLRTRSAIDAAEVVVFLVDASEP 610 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMV-SDKLNLLQDLRTKAIKNLPQIGDIYINTIS 357 +QD R++ + ++G A+V+A NKWD+V D+ +LL+ + ++P + I+ + Sbjct: 611 IAEQDQRVLRMILDSGRALVVAYNKWDLVDEDRRDLLEREIELQLSHVPWARRVNISAKT 670 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 GR + L+ M+ LE W RI+T LN+WL+ + PPP R R+ + TQ Sbjct: 671 GRALQKLEPAMIEALES---WDQRISTGQLNTWLRAVIAETPPPMRGGRLPRVLFATQAS 727 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 + PP ++F T + Y+R+L +LR +F G P+R+ + Sbjct: 728 TKPPVIVLFTT--GFLEHGYRRFLERKLRESFGFEGSPVRIAVR 769 >gi|227537540|ref|ZP_03967589.1| GTP-binding protein EngA [Sphingobacterium spiritivorum ATCC 33300] gi|227242677|gb|EEI92692.1| GTP-binding protein EngA [Sphingobacterium spiritivorum ATCC 33300] Length = 441 Score = 259 bits (663), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 147/461 (31%), Positives = 229/461 (49%), Gaps = 30/461 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +AIVG PNVGKSTLFNRL + + A+V + G+TRDR Y A G F ++DT G Sbjct: 9 MANIVAIVGRPNVGKSTLFNRLTESRKAIVDDFSGVTRDRHYESAEWIGKKFTVIDTGGF 68 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 G + + + DQ +AI EA +I+F++D GIT D I LR+ P+ + +NK Sbjct: 69 VHGSDDVFEEAIRDQVYIAIEEASVIIFMVDVTTGITDLDDEIADILRRSTKPVYVAANK 128 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D + E Y+ EI IS+ GT EL + F Sbjct: 129 VDHAKLHHDSAEFYAFGLGEIYNISSATGSGTGELLDAVVSTF----------------- 171 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 + + S + +VGRPNVGKS+L N LLG R + +G TRD Sbjct: 172 -------------EVEEEEESTLPKYTIVGRPNVGKSSLTNALLGKERNIVTPVAGTTRD 218 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ I +N H + DTAGMR+ S++ E +E +V ++++++ + I++LDA E Sbjct: 219 SIRIHYNQFGHEFLLIDTAGMRRKSKVNEDIEFYSVMRTIKALEDSDVVILMLDAQDGIE 278 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 QD+ I V++ +NKWD++ +++ + + + D+ I S Sbjct: 279 AQDINIFHLAEKNKKGVMIVVNKWDLIEKDNKTMKEFEARIREKIAPFTDVPIVFTSVTE 338 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 + + + ++ + +I TS LN + + PPP I +Y ++KY+TQI Sbjct: 339 KQRIHKTLEVAAKVYQNKTKKIPTSKLNEVMLQVIENYPPPAIKGKYIKVKYVTQIPGRS 398 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 P F FC P I + YKRY+ N+LR NF G+PI++ F+ Sbjct: 399 PMFAFFCNLPQYIKDPYKRYVENKLRENFDFEGVPIQLYFR 439 >gi|219124383|ref|XP_002182484.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217405830|gb|EEC45771.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 489 Score = 259 bits (663), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 157/501 (31%), Positives = 264/501 (52%), Gaps = 63/501 (12%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKM-----AVVGNHPGITRDRLYGQAIINGVIFNIVDTAG 59 ++I+G PN GKSTLFNRL+ K A+V N PG TRDR I G +F +VDTAG Sbjct: 5 VSILGPPNAGKSTLFNRLLDKAANRAGTAIVSNVPGTTRDRRECVGRIGGTLFRLVDTAG 64 Query: 60 IADGKNCSIAKQ--------------MNDQTELAINEAHLILFLIDSKAGITPYDHAITS 105 + DG+ + Q M QT A +A L+ + D++ G+T Sbjct: 65 V-DGERLELLAQSRRNQNGEGILMKFMMGQTLEAARQADLVFLMFDARVGVTADLLETAR 123 Query: 106 FLRK-----------KNIP---IIIVSNKM-------DTRIAQRNFYEIYSLDFKEIVEI 144 +LRK +P I +++NK+ D I + E L F E + I Sbjct: 124 WLRKISQREQDPAAQTALPDRQIFLLANKLEGDFWNFDGSIVLDHLTEATRLGFGEAIPI 183 Query: 145 SAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEESPKENITSEGKSSVKNISKPL 204 SA H G +++ +I + K L +++++ ++ S+ + KPL Sbjct: 184 SAHHGEGLADIAVLIEQAAVAK--RQSLGILDDD------------TDLASNDSDKDKPL 229 Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP 264 ++A++GR NVGKSTL+N LL +R++ G+ G+TRD++++ W WKN P++I DTAG+RK Sbjct: 230 QLAILGRQNVGKSTLVNALLKQDRVIVGATPGLTRDAIAVEWTWKNRPVQIVDTAGIRKR 289 Query: 265 SRIT--ESLEQKTVKKSMQSVRTCETTIVLLDATI-PFEKQDLRIVDSVFNTGHAVVLAL 321 S+ +++E +V+ ++++++ + +++LDA ++Q+L I D+V G A+V+A Sbjct: 290 SQRNHEDAIEDLSVEDALRAMKVADVAVLVLDAEARKLQRQELAIADAVLKEGRALVVAA 349 Query: 322 NKWDMVSD----KLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKL 377 NK D++ + K + +D+R + P + I +S TG+ + LM V + Sbjct: 350 NKMDLIVERGYSKKDFAEDVRAQLEARYPILRKTPIVPMSSLTGDSVHKLMPVVFRARER 409 Query: 378 WKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESY 437 W +I+T LN W+ + PPP + R R+KY+ Q + PP+FL+FC + +PE+Y Sbjct: 410 WSRKISTGELNRWIAEVMDGKPPPPVSGRKARIKYVMQTKGRPPTFLLFCNVAS-LPENY 468 Query: 438 KRYLINRLRINFSLSGIPIRM 458 R+L + F + G+ +RM Sbjct: 469 LRFLTRNFQDTFEMFGMEVRM 489 >gi|332883522|gb|EGK03805.1| GTP-binding protein engA [Dysgonomonas mossii DSM 22836] Length = 468 Score = 259 bits (663), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 159/454 (35%), Positives = 242/454 (53%), Gaps = 30/454 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNRL + + A+V G TRDR YG+ G F++VDT G Sbjct: 36 VAIVGRPNVGKSTLFNRLTESRQAIVDETSGTTRDRQYGKVEWGGQDFSLVDTGGWVVNS 95 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 ++N Q +AI EA +ILF++D G+T D ++ + LR+ PI++VSNK D Sbjct: 96 EDVFENEINKQVAIAIEEADVILFMVDVMNGLTDLDSSVANMLRRSKKPILLVSNKADNF 155 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 E Y+L + + ISA + GT +L VI F K++EE Sbjct: 156 NLHAQSAEFYALGLGDPINISAINGSGTGDLLDVIITKF--------------TKKSEEE 201 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 E+I RIA+VGRPN GKS+L+N L+ R + + +G TRDS+ Sbjct: 202 HLEDIP--------------RIAIVGRPNAGKSSLVNALMDEERNIVTNIAGTTRDSIYT 247 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 ++ N + DTAG+RK ++TE LE +V +S++++ + ++++DAT E QD+ Sbjct: 248 RFDKFNLDFYLVDTAGIRKKGKVTEDLEYYSVIRSIKAIENSDVCVLMIDATQGIESQDM 307 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDK-LNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 I + +V+ +NKWD+V +K L +++ + L D I S T + Sbjct: 308 NIFSLIQKNRKGLVVCVNKWDLVENKELIVIKTFENAIRERLAPFTDFPIIFASAMTKQR 367 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQI-QSSPPS 422 + ++ + E+ KT+I T LN L + PPP +Y ++KYITQ+ + P+ Sbjct: 368 ILKVLETAKEVYGRRKTKIPTHKLNEILLPIIERTPPPANKGKYIKIKYITQLPNTHVPT 427 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 F+ FC P I + YKR+L NR+R N+ LSG PI Sbjct: 428 FVFFCNLPQWIKDPYKRFLENRIRDNWDLSGTPI 461 >gi|315658242|ref|ZP_07911114.1| ribosome-associated GTPase EngA [Staphylococcus lugdunensis M23590] gi|315496571|gb|EFU84894.1| ribosome-associated GTPase EngA [Staphylococcus lugdunensis M23590] Length = 436 Score = 259 bits (663), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 147/455 (32%), Positives = 238/455 (52%), Gaps = 29/455 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST+FNR+V +++++V + PG+TRDR+Y FNI+DT GI G Sbjct: 6 VAIVGKPNVGKSTIFNRVVGERVSIVEDTPGVTRDRIYSSGEWLTHEFNIIDTGGIEIG- 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + Q+ Q E+AI+EA +I+F+++ + G+T D + L K P+++ NK+D Sbjct: 65 DAPFQTQIRAQAEIAIDEADVIIFMVNVREGLTQSDEMVAQILYKSKKPVVLAVNKVDNP 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + Y+ Y+L F E IS H LG +L + K F NK E+ Sbjct: 125 EMKTDIYDFYALGFGEPYPISGSHGLGLGDLLDEVVKHF--------------NKETEDP 170 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 E+ +R++++GRPNVGKS+L+N +LG R++ + +G TRD++ Sbjct: 171 YDEDT--------------IRLSIIGRPNVGKSSLVNAILGEERVIVSNVAGTTRDAIDT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + N + DTAGMRK ++ ES E+ +V ++++++ ++++DA +QD Sbjct: 217 EYTYDNQDYVLIDTAGMRKKGKVYESTEKYSVLRALKAIERSNVVLIVIDAEEGIIEQDK 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 R+ G AVV+ +NKWD V ++ KN + I +S + + L Sbjct: 277 RVAGYAHEEGKAVVIVVNKWDTVEKDSKTMKKFTDDIRKNFQFLDYAQIAFVSAKERQRL 336 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 L + E ++ K R+ +S LN + NP PT R + Y TQ+ PP+F+ Sbjct: 337 RTLFPYINEASENHKKRVQSSTLNEVVTDAISMNPTPTDKGRRLNVFYATQVAIEPPTFV 396 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 IF + SYKRYL N++R F G PI + Sbjct: 397 IFVNDVELMHFSYKRYLENQIRDAFGFEGTPIHII 431 >gi|66044500|ref|YP_234341.1| GTP-binding protein EngA [Pseudomonas syringae pv. syringae B728a] gi|81308464|sp|Q4ZX19|DER_PSEU2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|63255207|gb|AAY36303.1| Small GTP-binding protein domain:GTP-binding [Pseudomonas syringae pv. syringae B728a] Length = 490 Score = 259 bits (663), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 156/467 (33%), Positives = 245/467 (52%), Gaps = 10/467 (2%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ IA+VG PNVGKST+FNRL + + A+VG+ G+TRDR YG+A G + ++DT GI Sbjct: 1 MVPVIALVGRPNVGKSTMFNRLTRTRDAIVGDLSGLTRDRQYGEAKWQGRSYILIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + G + ++M +Q+ LAI EA ++LFL+D++AG T D I LRK+N +V+NK Sbjct: 61 S-GDEHGMDEKMAEQSLLAIEEADVVLFLVDARAGYTAADQMIGEHLRKRNKRSYVVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D E + + + ++ H G S++ + + F + + Sbjct: 120 IDNIDENLARAEFSPMGLGDAIPVAGAHGRGISQMLEIALREFPRDEDEPEEGVEVEEVA 179 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 + K K +K IA++GRPNVGKSTL+NR+LG +R++ + G TRD Sbjct: 180 EGQEAKRIPGPSEKDGIK-------IAIIGRPNVGKSTLVNRMLGEDRVIVYDEPGTTRD 232 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ I + + DTAG+RK +I E +E+ +V K++Q+++ I ++DA Sbjct: 233 SIYIPFERNEEKYTLIDTAGVRKRGKIHEEVEKFSVVKTLQAIKDANVVIFVMDAREGVV 292 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 DL ++ G A+V+ALNKWD ++ + + DI+ IS Sbjct: 293 DHDLNLLGFALEAGRALVIALNKWDGMTPGERDFVKIELERRLFFVDFADIHF--ISAMH 350 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G G+ +L SV K TR TS L L+ ++ PP + +R +L+Y ++P Sbjct: 351 GTGVGNLYQSVQNSFKSAVTRWPTSRLTQILEDAVSEHAPPMVGSRRIKLRYAHLGGANP 410 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 P +I K+P+SY RYL N R L G PIR+ F+ +NPY Sbjct: 411 PLIVIHGNQVEKVPKSYVRYLENTYRRVLKLVGTPIRIEFKGGENPY 457 >gi|161349991|ref|YP_175372.2| GTP-binding protein EngA [Bacillus clausii KSM-K16] Length = 437 Score = 259 bits (662), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 147/454 (32%), Positives = 235/454 (51%), Gaps = 29/454 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST+FNR+V +++A+V + PG+TRDRLY + F ++DT GI G Sbjct: 6 VAIVGRPNVGKSTIFNRIVGERVAIVEDLPGVTRDRLYSKGEWLNHEFYVIDTGGIELGD 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + QM Q E+AI+EA++I+F+++ + GIT D + + L + P+++ NK+D Sbjct: 66 EPLLV-QMRQQAEIAIDEANVIIFMVNGREGITAADQEVANMLFRSKKPVVLAVNKVDNP 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + YE YSL E IS H LG +L + + F Sbjct: 125 DMRELLYEFYSLGAGEPYGISGSHGLGIGDLLDEVVRHF--------------------- 163 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P+EN ++K +A++GRPNVGKS+L+N LLG R++ G TRD++ Sbjct: 164 PEENDDDYADDTIK-------MALIGRPNVGKSSLVNALLGEERVIVSQIPGTTRDAIDT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 S+ + DTAGMRK ++ E+ E+ +V +S++++ + +V+LD +QD Sbjct: 217 SFTRDGQHYVVIDTAGMRKRGKVYEATEKYSVLRSLKAIERSDVVLVVLDGEEGIIEQDK 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 +I G A+V+ +NKWD V +Q + I +S +T + L Sbjct: 277 KIAGYAHEAGRAIVIVVNKWDAVKKDDKTMQTFVEDIRSEFQFLSYAPICFLSAKTKQRL 336 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 L+ V ++++ R+ T LN + NP PT + ++ Y+TQ+ PP+F+ Sbjct: 337 HLLLPEVRKVSESHHLRVPTHVLNDMIMDAVAMNPTPTDKGKRLKINYVTQVAVQPPTFV 396 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 F P + SY+R+L NRLR F G PI + Sbjct: 397 FFVNEPELMHFSYRRFLENRLRATFEFEGTPIHI 430 >gi|54294416|ref|YP_126831.1| GTP-binding protein EngA [Legionella pneumophila str. Lens] gi|81822385|sp|Q5WWG8|DER_LEGPL RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|53754248|emb|CAH15725.1| hypothetical protein lpl1485 [Legionella pneumophila str. Lens] Length = 462 Score = 259 bits (662), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 164/470 (34%), Positives = 245/470 (52%), Gaps = 31/470 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI IA+VG PNVGKSTLFNR+ K + A+V + PG+TRDR YG A F IVDT GI Sbjct: 1 MIPVIALVGRPNVGKSTLFNRITKTQDALVADFPGLTRDRQYGHAQHENKSFIIVDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + + M+ Q+++A+NEA++ILFL+D ++G+T D I LRK N + +V NK Sbjct: 61 GV-DDIEVDTLMSKQSQVALNEANVILFLVDGRSGLTGIDQQIAQALRKLNKKVHLVVNK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 D + SL +I ISA H G S L I + F EM E Sbjct: 120 TDGINEDIACADFQSLGITDIHAISASHGGGISSLLEEILEPF-------ITEMHEATD- 171 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 K ++IA GRPNVGKSTLINR+LG R++ G TRD Sbjct: 172 --------------------DKAIKIAFAGRPNVGKSTLINRILGEERVVVYDMPGTTRD 211 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+SI + ++ + DTAG+R+ SRI E +E+ +V K++Q+++ ++LLDA Sbjct: 212 SISIPFTREDKQYVLIDTAGVRRKSRIDEKIEKFSVIKTLQAIKEAHVCLLLLDANEGIT 271 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 QD+ ++ + +G A+V+A+NKWD + ++ + ++++ + L I IS Sbjct: 272 DQDMNLLGFIIESGKALVIAVNKWDGLEEEHK--EKIKSELSRRLHFANFAKIRFISALH 329 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G G+ L + E +T L LQ ++ PP I R +L+Y +P Sbjct: 330 GSGVGGLFKDINEAYHSAIQSFSTPKLTRLLQDISAKHTPPCINGRRIKLRYAHLGGHNP 389 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 P +I + +PESYKRYL N + L G P+++ F+ +NP+ K Sbjct: 390 PVIVIHGNQLDALPESYKRYLNNEFIKHLGLVGTPLKIEFKGGQNPFANK 439 >gi|167630055|ref|YP_001680554.1| GTP-binding protein [Heliobacterium modesticaldum Ice1] gi|238687893|sp|B0TFW3|DER_HELMI RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|167592795|gb|ABZ84543.1| GTP-binding protein [Heliobacterium modesticaldum Ice1] Length = 442 Score = 259 bits (662), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 151/458 (32%), Positives = 245/458 (53%), Gaps = 35/458 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG- 63 +AIVG PNVGKSTLFNRL ++A+V + PG+TRDRLY A F +VDT G+ G Sbjct: 6 VAIVGRPNVGKSTLFNRLTGGRVAIVEDQPGVTRDRLYRDANWLDREFTVVDTGGLDFGD 65 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + + ++ Q E A+ EA +ILFL+D ++GIT D A+ + LRK P+ +V NK++ Sbjct: 66 RENPFSAIIHKQAEAAMEEADVILFLVDGRSGITADDEAVAAILRKAKKPVFLVVNKIED 125 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + +++ YSL E + ISA H + T +L + + + ENN +++ Sbjct: 126 FSQRERYFDFYSLGLGEPIPISASHGMNTGDLLDAVVAV-----------LPENNGEDDD 174 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 ++IAV+GRPNVGKS+L+N +LG R++ G TRD++ Sbjct: 175 P-----------------DTIKIAVIGRPNVGKSSLVNAILGQERVIVSDIPGTTRDAID 217 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 +++ + DTAGMR+ RI E++E+ +V +S++++ + ++++DA+ +QD Sbjct: 218 TAFDRDGKRYILIDTAGMRRKGRIEEAVERYSVMRSLRAIDRSDVVLMVIDASQGVTEQD 277 Query: 304 LRIVDSVFNTGHAVVLALNKWDMV--SDK-LNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 +I G A VL LNKWD+V DK ++ + + L IY++ + T Sbjct: 278 KKIAGYAHEAGKACVLVLNKWDLVPKDDKTMSRFDKVVRSEMSFLAYAPTIYVSAL---T 334 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 + L ++ V + + RI+TS LN L Q P PT R ++ ++TQ P Sbjct: 335 KQRLPKILELVDFVAEQATRRISTSVLNELLADIQRVTPAPTDRGRRLKILFVTQTAVKP 394 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 P+F+ F + SY+R++ NR R F G+P+R Sbjct: 395 PTFVFFVNDEDLFHFSYRRHVENRFRETFGFEGVPMRF 432 >gi|163754018|ref|ZP_02161141.1| hypothetical protein KAOT1_20387 [Kordia algicida OT-1] gi|161326232|gb|EDP97558.1| hypothetical protein KAOT1_20387 [Kordia algicida OT-1] Length = 434 Score = 259 bits (662), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 144/457 (31%), Positives = 249/457 (54%), Gaps = 29/457 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNR++K++ A+V + G+TRDR YG++ NG F+++DT G G Sbjct: 5 VAIVGRPNVGKSTLFNRMIKRREAIVDSVSGVTRDRHYGKSDWNGKEFSLIDTGGYVVGS 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + ++++ Q ELAI+EA ILF++D ++G+T D + + LR+ N P+++V NK+D Sbjct: 65 DDIFEQEIDKQVELAIDEADAILFVVDVESGVTGMDEEVANLLRRVNKPVLLVVNKVDAA 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + E YSL E I++ + GT E+ ++E EE+ Sbjct: 125 NRLHDATEFYSLGLGEYYPIASINGSGTGEMLDA---------------LVEALPDVEET 169 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 +EN+ R AVVGRPN GKS+LIN L+G +R + +G TRD++ Sbjct: 170 EEENLP--------------RFAVVGRPNAGKSSLINALIGEDRYIVTDIAGTTRDAIDT 215 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 +N + DTAG+R+ +++ E LE +V +S++++ + ++++DAT F+ Q Sbjct: 216 KYNRFGFEFNLVDTAGIRRKAKVKEDLEFYSVMRSIRAIEHSDVCLLVVDATRGFDSQVQ 275 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 I +V+ +NKWD+V + +++ + + D+ I IS T + + Sbjct: 276 NIFWLAEKNHKGIVILVNKWDLVEKDTSTVKEFEKHIRQQIEPFTDVPIVFISVLTKQRI 335 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 + + +++ K R+ TS LN + + PPP +Y ++K+ TQ+ + P F Sbjct: 336 FKAIETAVQVYKNRSNRVPTSKLNDTMLPIIERTPPPAHKGKYVKIKFCTQLPTPYPQFA 395 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 F P + + YKR++ N+LR F +G+P+++ F+ Sbjct: 396 FFANLPQYVRDPYKRFIENKLREQFDFNGVPVQVYFR 432 >gi|330894498|gb|EGH27159.1| GTP-binding protein Der [Pseudomonas syringae pv. mori str. 301020] Length = 490 Score = 259 bits (662), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 156/467 (33%), Positives = 244/467 (52%), Gaps = 10/467 (2%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ IA+VG PNVGKST+FNRL + + A+VG+ G+TRDR YG+A G + ++DT GI Sbjct: 1 MVPVIALVGRPNVGKSTMFNRLTRTRDAIVGDLSGLTRDRQYGEAKWQGRSYILIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + G + ++M +Q+ LAI EA ++LFL+D++AG T D I LRK+N +V+NK Sbjct: 61 S-GDEHGMDEKMAEQSLLAIKEADVVLFLVDARAGYTAADQMIGEHLRKRNKRSYVVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D E + + + ++ H G S++ + + F + Sbjct: 120 IDNIDENLARAEFSPMGLGDAIPVAGAHGRGISQMLEIALREFPKDEDELEEGEEVEEVA 179 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 + K K +K IA++GRPNVGKSTL+NR+LG +R++ + G TRD Sbjct: 180 EGQEAKRIPGPSEKDGIK-------IAIIGRPNVGKSTLVNRMLGEDRVIVYDEPGTTRD 232 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ I + + DTAG+RK +I E +E+ +V K++Q+++ I ++DA Sbjct: 233 SIYIPFERNEEKYTLIDTAGVRKRGKIHEEVEKFSVVKTLQAIKDANVVIFVMDAREGVV 292 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 DL ++ G A+V+ALNKWD ++ + + DI+ IS Sbjct: 293 DHDLNLLGFALEAGRALVIALNKWDGMTPGERDFVKIELERRLFFVDFADIHF--ISAMH 350 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G G+ +L SV K TR TS L L+ ++ PP + +R +L+Y ++P Sbjct: 351 GTGVGNLYQSVQNSFKSAVTRWPTSRLTQILEDAVSEHAPPMVGSRRIKLRYAHLGGANP 410 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 P +I K+P+SY RYL N R L G PIR+ F+ +NPY Sbjct: 411 PLIVIHGNQVEKVPKSYVRYLENTYRRVLKLVGTPIRIEFKGGENPY 457 >gi|289626149|ref|ZP_06459103.1| GTP-binding protein EngA [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289649055|ref|ZP_06480398.1| GTP-binding protein EngA [Pseudomonas syringae pv. aesculi str. 2250] gi|298486027|ref|ZP_07004101.1| GTP-binding protein EngA [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298159504|gb|EFI00551.1| GTP-binding protein EngA [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330869573|gb|EGH04282.1| GTP-binding protein Der [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 490 Score = 259 bits (662), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 156/467 (33%), Positives = 244/467 (52%), Gaps = 10/467 (2%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ IA+VG PNVGKST+FNRL + + A+VG+ G+TRDR YG+A G + ++DT GI Sbjct: 1 MVPVIALVGRPNVGKSTMFNRLTRTRDAIVGDLSGLTRDRQYGEAKWQGRSYILIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + G + ++M +Q+ LAI EA ++LFL+D++AG T D I LRK+N +V+NK Sbjct: 61 S-GDEHGMDEKMAEQSLLAIEEADVVLFLVDARAGYTAADQMIGEHLRKRNKRSYVVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D E + + + ++ H G S++ + + F + Sbjct: 120 IDNIDENLARAEFSPMGLGDAIPVAGAHGRGISQMLEIALREFPKDEDELEEGEEVEEVA 179 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 + K K +K IA++GRPNVGKSTL+NR+LG +R++ + G TRD Sbjct: 180 EGQEAKRIPGPSEKDGIK-------IAIIGRPNVGKSTLVNRMLGEDRVIVYDEPGTTRD 232 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ I + + DTAG+RK +I E +E+ +V K++Q+++ I ++DA Sbjct: 233 SIYIPFERNEEKYTLIDTAGVRKRGKIHEEVEKFSVVKTLQAIKDANVVIFVMDAREGVV 292 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 DL ++ G A+V+ALNKWD ++ + + DI+ IS Sbjct: 293 DHDLNLLGFALEAGRALVIALNKWDGMTPGERDFVKIELERRLFFVDFADIHF--ISALH 350 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G G+ +L SV K TR TS L L+ ++ PP + +R +L+Y ++P Sbjct: 351 GTGVGNLYQSVQNSFKSAVTRWPTSRLTQILEDAVSEHAPPMVGSRRIKLRYAHLGGANP 410 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 P +I K+P+SY RYL N R L G PIR+ F+ +NPY Sbjct: 411 PLIVIHGNQVEKVPKSYVRYLENTYRRVLKLVGTPIRIEFKGGENPY 457 >gi|260893088|ref|YP_003239185.1| ribosome-associated GTPase EngA [Ammonifex degensii KC4] gi|260865229|gb|ACX52335.1| ribosome-associated GTPase EngA [Ammonifex degensii KC4] Length = 447 Score = 259 bits (662), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 153/467 (32%), Positives = 235/467 (50%), Gaps = 35/467 (7%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 + IVG PNVGKSTLFNRLV K +A+V PG+TRDRLY + G F +VDT G+ + Sbjct: 5 VVVIVGRPNVGKSTLFNRLVGKGVAIVEEEPGVTRDRLYREVEWCGREFVLVDTGGVVES 64 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + + Q E A+ EA L+LF++D K G+T D AI S LR+ P ++V NK+D Sbjct: 65 PESPLEVAIRRQVEQALEEADLVLFVVDYKTGVTAEDQAIASMLRRTGKPTLLVVNKVDK 124 Query: 124 RIAQRNFYEIYSLDFK-EIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 + Y+L E + +SA L +L + ++ + R E Sbjct: 125 FDPPPVLSDFYALGLSTEPIPVSAAQGLNVGDLLDAV------------IDRLPPEDREE 172 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 E P+ ++ + +A+VGRPNVGKS+L+N LLG R++ G TRD+V Sbjct: 173 ERPQ--------------AEAIAVAIVGRPNVGKSSLVNALLGEERVIVSDIPGTTRDAV 218 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + W+ P + DTAG+R+ SRI E E+++ ++ Q++R +++LD Q Sbjct: 219 DTFFTWEGQPYILIDTAGLRRRSRIKEEAERQSCLRARQALRRAHVAVLVLDGAEGVTMQ 278 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMV----SDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 D RI + G AVV+A+NKWD+V D L+ LR + L I + Sbjct: 279 DKRIAGLIEEAGRAVVIAVNKWDLVPSSRKDAPRYLEALR----RELYFINYAPVVFTVA 334 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 G G+ ++ V + R+ L +++ QL+NPPP + ++ + Q+ Sbjct: 335 PEGFGVTQVLTEVERALANARRRVREQELWEVVEEAQLRNPPPRVKDKRLEIYRAYQVAV 394 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 PP FL+ P + Y++YL N+LR F +G PIR + K Sbjct: 395 EPPVFLLQVNDPELMTPYYRKYLENQLRAAFDFTGTPIRFVLRRHKK 441 >gi|220931895|ref|YP_002508803.1| small GTP-binding protein [Halothermothrix orenii H 168] gi|254783157|sp|B8CWY9|DER_HALOH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|219993205|gb|ACL69808.1| small GTP-binding protein [Halothermothrix orenii H 168] Length = 438 Score = 259 bits (662), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 150/458 (32%), Positives = 244/458 (53%), Gaps = 29/458 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNRL ++++V P +TRDR+Y F IVDT GI Sbjct: 6 VAIVGRPNVGKSTLFNRLAGYRISIVEGEPNVTRDRIYADVNWLDRSFIIVDTGGIDPYD 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 I + Q ++AI+EA LILF++D + G+T D + +FLRK N +I+V NK+D Sbjct: 66 RDQIKNMVKYQAQMAIDEASLILFVVDGRNGLTATDEEVAAFLRKSNKKVILVVNKVDDF 125 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + + +E Y+L F +++ ISAEH T +L I + +K P E+ Sbjct: 126 KNMEEDCWEFYTLGFDKLIPISAEHGKNTGDLLDEIVNMLPEKGP-------------ED 172 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 S + I +A++G+PNVGKS+L+N ++G R++ G TRD++ Sbjct: 173 SDDDAID---------------VAIIGKPNVGKSSLVNYIVGQERVIVSDIPGTTRDAID 217 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 H + DTAG+RK SR+ E+ E + ++++++ + I+++DA +QD Sbjct: 218 TLVEKNGHRYNLIDTAGLRKKSRVKEATEYYSALRTIKAIDRSDGVIMMIDALEGVTEQD 277 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 +I G A+VLA+NKWD+V + +++ + + NL + + IS TG+ Sbjct: 278 KKIAGYAHEAGKAIVLAVNKWDLVEKDTHTMENYKEEIYYNLKFLQYAPVTFISALTGKR 337 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 + +L+ + + R+ T LN +Q++ PPT + ++ Y TQ+ PP+F Sbjct: 338 VQELLKLIEYVVDQNSRRVKTGLLNEVVQESIQLREPPTRKGKKLKIFYTTQVGIKPPTF 397 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 + F P + +Y+RYL N LR F G PIR+ F+ Sbjct: 398 VFFVNNPGLVHFAYQRYLENSLRDAFGFVGSPIRLKFK 435 >gi|56909884|dbj|BAD64411.1| EngA subfamily GTP-binding protein [Bacillus clausii KSM-K16] Length = 439 Score = 259 bits (662), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 147/455 (32%), Positives = 235/455 (51%), Gaps = 29/455 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 +AIVG PNVGKST+FNR+V +++A+V + PG+TRDRLY + F ++DT GI G Sbjct: 7 VVAIVGRPNVGKSTIFNRIVGERVAIVEDLPGVTRDRLYSKGEWLNHEFYVIDTGGIELG 66 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + QM Q E+AI+EA++I+F+++ + GIT D + + L + P+++ NK+D Sbjct: 67 DEPLLV-QMRQQAEIAIDEANVIIFMVNGREGITAADQEVANMLFRSKKPVVLAVNKVDN 125 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + YE YSL E IS H LG +L + + F Sbjct: 126 PDMRELLYEFYSLGAGEPYGISGSHGLGIGDLLDEVVRHF-------------------- 165 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 P+EN ++K +A++GRPNVGKS+L+N LLG R++ G TRD++ Sbjct: 166 -PEENDDDYADDTIK-------MALIGRPNVGKSSLVNALLGEERVIVSQIPGTTRDAID 217 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 S+ + DTAGMRK ++ E+ E+ +V +S++++ + +V+LD +QD Sbjct: 218 TSFTRDGQHYVVIDTAGMRKRGKVYEATEKYSVLRSLKAIERSDVVLVVLDGEEGIIEQD 277 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 +I G A+V+ +NKWD V +Q + I +S +T + Sbjct: 278 KKIAGYAHEAGRAIVIVVNKWDAVKKDDKTMQTFVEDIRSEFQFLSYAPICFLSAKTKQR 337 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 L L+ V ++++ R+ T LN + NP PT + ++ Y+TQ+ PP+F Sbjct: 338 LHLLLPEVRKVSESHHLRVPTHVLNDMIMDAVAMNPTPTDKGKRLKINYVTQVAVQPPTF 397 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 + F P + SY+R+L NRLR F G PI + Sbjct: 398 VFFVNEPELMHFSYRRFLENRLRATFEFEGTPIHI 432 >gi|254786612|ref|YP_003074041.1| GTP-binding protein EngA [Teredinibacter turnerae T7901] gi|259645886|sp|C5BLV6|DER_TERTT RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|237684664|gb|ACR11928.1| GTP-binding protein EngA [Teredinibacter turnerae T7901] Length = 464 Score = 259 bits (662), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 151/467 (32%), Positives = 243/467 (52%), Gaps = 29/467 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI TIA+VG PNVGKSTLFNRL K + A+V N G+TRDR YG A G F +VDT GI Sbjct: 1 MIPTIALVGRPNVGKSTLFNRLTKTRDAIVANFAGLTRDRKYGDAEFEGKRFIVVDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + G I M +Q+ AI E+ +ILFL+D + G+T D I LR + P +V+NK Sbjct: 61 S-GDEEGIDSVMAEQSLQAIAESDIILFLVDCRDGLTHVDSQIAQHLRTLHKPTFLVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D + + L E+ ++A H G + L + + Sbjct: 120 VDGQNHDLAIAPFFELGLGEVHSVAAAHGRGVNTLMATVLA------------------- 160 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 +I E ++ + + L++A++GRPNVGKSTL+NR+LG R++ G TRD Sbjct: 161 -------DIAVESEADEADAERRLKMAIIGRPNVGKSTLVNRMLGEERVVVFDMPGTTRD 213 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ I + + DTAG+R+ + ++E+ ++ K++Q++ I+++DA+ Sbjct: 214 SIYIDYERDEKHYTLIDTAGVRRRKNVKLTVEKFSIIKTLQAINDANVVILVMDASEGIV 273 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 QDL ++ +G A+V+ALNKWD + D ++T+ + L + ++ IS Sbjct: 274 DQDLHLLGHAIESGRALVVALNKWDGLEDDHKSY--VKTELQRRLSFVDYADLHFISALH 331 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G G+ +L SV + + + +TS+L L+ + PP + R +L+Y +P Sbjct: 332 GTGVGNLYKSVEKAYQAATEKYSTSFLTRILEDAVTAHQPPLVRGRRIKLRYAHAGGHNP 391 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 P +I T +++P Y RYL R L G P+R+ ++S NP+ Sbjct: 392 PIIVIHGTQTSEVPNHYTRYLEKVYRRALELHGTPVRIEYRSGDNPF 438 >gi|254283197|ref|ZP_04958165.1| GTP-binding protein EngA [gamma proteobacterium NOR51-B] gi|219679400|gb|EED35749.1| GTP-binding protein EngA [gamma proteobacterium NOR51-B] Length = 472 Score = 259 bits (662), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 147/471 (31%), Positives = 244/471 (51%), Gaps = 32/471 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFN+L + + A+V N G+TRDR YG + V + ++DT GI Sbjct: 1 MVPVVALVGRPNVGKSTLFNQLTRTRDALVANLSGLTRDRQYGDGKVGAVPYIVIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + G I M Q++ AI EA ++L ++D +AGI D A+ S+LR+K+ P +V NK Sbjct: 61 S-GDESGIDAAMAGQSQTAIEEADIVLLMVDGRAGIQAGDEALVSYLRRKSKPFHLVINK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D + + Y + I+A H+ G S + + + Sbjct: 120 IDGVGEEAALSDFYGFGIDGMHAIAASHNRGISSMMQSVLSDY----------------- 162 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 S+G S++ +R+A +GRPNVGKSTLINRLLG +R++ + G TRD Sbjct: 163 ----------SQGDESLERSDGGIRVAAIGRPNVGKSTLINRLLGDDRVVVFDEPGTTRD 212 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ I + + + DTAG+R+ + E++E+ ++ K+++++ I+L+DA Sbjct: 213 SIYIDFERRGQAYTLIDTAGVRRRKNVRETVEKFSIVKTLKAIADAHVVILLMDAHEGVV 272 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVS-DKLNLLQDLRTKAIKNLPQIGDIYINTISGR 359 +QDL ++ + G +V+A+NKWD V D+ + +R++ + L + I+ IS Sbjct: 273 EQDLHLLGQCIDAGRGLVIAVNKWDGVDPDERDW---IRSELQRRLQFVDYADIHFISAL 329 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 G G+ L SV ++T+ L L+ +PPP + R +L+Y + Sbjct: 330 HGTGVGHLYESVGRAYSAAIKSLSTNRLTRILEDAVSTHPPPMVNGRRIKLRYAHAGGQN 389 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 PP +I T +P SY RYL R L G P+++ ++ NP+ + Sbjct: 390 PPLIVIHGTQTEALPSSYSRYLEKVFRRELELHGTPVKIELRTGDNPFAGR 440 >gi|330969066|gb|EGH69132.1| GTP-binding protein Der [Pseudomonas syringae pv. aceris str. M302273PT] Length = 490 Score = 259 bits (662), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 156/467 (33%), Positives = 245/467 (52%), Gaps = 10/467 (2%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ IA+VG PNVGKST+FNRL + + A+VG+ G+TRDR YG+A G + ++DT GI Sbjct: 1 MVPVIALVGRPNVGKSTMFNRLTRTRDAIVGDLSGLTRDRQYGEAKWQGRSYILIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + G + ++M +Q+ LAI EA ++LFL+D++AG T D I LRK+N +V+NK Sbjct: 61 S-GDEHGMDEKMAEQSLLAIEEADVVLFLVDARAGYTAADQMIGEHLRKRNKRSYVVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D E + + + ++ H G S++ + + F + + Sbjct: 120 IDNIDENLARAEFSPMGLGDAIPVAGGHGRGISQMLEIALREFPRDEDEPEEGVEVEEVA 179 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 + K K +K IA++GRPNVGKSTL+NR+LG +R++ + G TRD Sbjct: 180 EGQEAKRIPGPSEKDGIK-------IAIIGRPNVGKSTLVNRMLGEDRVIVYDEPGTTRD 232 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ I + + DTAG+RK +I E +E+ +V K++Q+++ I ++DA Sbjct: 233 SIYIPFERNEEKYTLIDTAGVRKRGKIHEEVEKFSVVKTLQAIKDANVVIFVMDAREGVV 292 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 DL ++ G A+V+ALNKWD ++ + + DI+ IS Sbjct: 293 DHDLNLLGFALEAGRALVIALNKWDGMTPGERDFVKIELERRLFFVDFADIHF--ISAMH 350 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G G+ +L SV K TR TS L L+ ++ PP + +R +L+Y ++P Sbjct: 351 GTGVGNLYQSVQNSFKSAVTRWPTSRLTQILEDAVSEHAPPMVGSRRIKLRYAHLGGANP 410 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 P +I K+P+SY RYL N R L G PIR+ F+ +NPY Sbjct: 411 PLIVIHGNQVEKVPKSYVRYLENTYRRVLKLVGTPIRIEFKGGENPY 457 >gi|261367335|ref|ZP_05980218.1| ribosome-associated GTPase EngA [Subdoligranulum variabile DSM 15176] gi|282570094|gb|EFB75629.1| ribosome-associated GTPase EngA [Subdoligranulum variabile DSM 15176] Length = 447 Score = 259 bits (662), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 147/467 (31%), Positives = 244/467 (52%), Gaps = 31/467 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST+FN+L +++A+V + PG+TRDR++ G F +VDT GI Sbjct: 6 VAIVGRPNVGKSTIFNKLTGQRLAIVEDTPGVTRDRIFCDCEWCGNKFLLVDTGGIEPRI 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + M +Q ++AI+ A I+ + + G+TP D I L + P+++ NK D + Sbjct: 66 DDGLLAHMREQAQIAIDSADCIIMVTELTNGVTPQDQDIAGMLMRSGKPVVLAVNKCD-K 124 Query: 125 IAQ--RNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 I + Y+ YSL EI+ +S H GT +L + + R++ Sbjct: 125 IGEPPMELYDFYSLGLGEIIPVSGVHGHGTGDLLDAVCAHL-------------DFTRDD 171 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 E + IT +AV+GRPNVGKS+LIN +LG NRL+ +++G TRD++ Sbjct: 172 EDGDDRIT---------------VAVIGRPNVGKSSLINHILGENRLIVANEAGTTRDAI 216 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 K DTAG+RK ++ +E+ +V +S+ +V ++++DAT+ F +Q Sbjct: 217 DTLVENKYGKFVFTDTAGLRKKGKVESGVERYSVLRSLAAVERSRVCVIMIDATVGFTEQ 276 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D ++ G A ++A+NKWD V + +R + ++ + I IS +TG+ Sbjct: 277 DSKVAGYAHEQGKACIIAVNKWDAVEKDSYTMDAMRKQLEEDFSFMSYAPIVFISAKTGQ 336 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 +D L ++ ++ TR+ T LN L + + PP+ + ++ YITQ + PP+ Sbjct: 337 RVDKLFETIHFVDIQNGTRVPTGALNEMLARATAKVQPPSDKGKRLKVFYITQTSTRPPT 396 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIK 469 F+ F SY+RYL N++R F L+G PIRM + + +K Sbjct: 397 FVCFVNQKALFHFSYQRYLENQIRETFGLTGTPIRMITREHGDGSVK 443 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 39/129 (30%), Positives = 63/129 (48%), Gaps = 16/129 (12%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRL-------YGQAIINGVIFNIVD 56 T+A++G PNVGKS+L N ++ + +V N G TRD + YG+ F D Sbjct: 179 TVAVIGRPNVGKSSLINHILGENRLIVANEAGTTRDAIDTLVENKYGK-------FVFTD 231 Query: 57 TAGI-ADGKNCSIAKQMNDQTEL-AINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPI 114 TAG+ GK S ++ + L A+ + + + +ID+ G T D + + ++ Sbjct: 232 TAGLRKKGKVESGVERYSVLRSLAAVERSRVCVIMIDATVGFTEQDSKVAGYAHEQGKAC 291 Query: 115 IIVSNKMDT 123 II NK D Sbjct: 292 IIAVNKWDA 300 >gi|68535955|ref|YP_250660.1| bifunctional cytidylate kinase/GTP-binding protein [Corynebacterium jeikeium K411] gi|68263554|emb|CAI37042.1| cytidylate kinase [Corynebacterium jeikeium K411] Length = 777 Score = 259 bits (662), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 151/464 (32%), Positives = 246/464 (53%), Gaps = 40/464 (8%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI- 60 + T+AIVG PNVGKSTL NR + ++ AVV + PG+TRDR+ +G F + DT G Sbjct: 342 LCTVAIVGRPNVGKSTLVNRFIGRREAVVEDFPGVTRDRISYLGEWSGRRFWVQDTGGWD 401 Query: 61 --ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVS 118 A G + +IA+Q E A+ A +I+F++DSK GIT D I L++ +P+I+V+ Sbjct: 402 PDAKGIHAAIARQ----AETAMETADVIVFVVDSKVGITSTDEVIARKLQRSKVPVIVVA 457 Query: 119 NKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 NK D + E ++L +SA+H G +++ + ++F P HP E+ Sbjct: 458 NKCDADAQLGDVAEFWALGLDNPYPVSAQHGKGAADVMDEVLRVF----PEHPREL---- 509 Query: 179 KRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 SV +S P R+A+VGRPNVGKS+L+N++ G R + + +G T Sbjct: 510 -----------------SV--VSGPRRVALVGRPNVGKSSLLNKITGEERSVVNNVAGTT 550 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 D V + + DTAG+RK ++ E ++ ++ E + L+DA+ P Sbjct: 551 VDPVDSIVELEEKTWKFVDTAGIRKKTKQARGHEFYASLRTRSAIDAAEVVVFLVDASEP 610 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMV-SDKLNLLQDLRTKAIKNLPQIGDIYINTIS 357 +QD R++ + ++G A+V+A NKWD+V D+ LL+ + ++P + I+ + Sbjct: 611 IAEQDQRVLRMILDSGRALVVAYNKWDLVDEDRRELLEREIELQLSHVPWARRVNISAKT 670 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 GR + L+ M+ LE W RI+T LN+WL+ + PPP R R+ + TQ Sbjct: 671 GRALQKLEPAMIEALES---WDQRISTGQLNTWLRAVIAETPPPMRGGRLPRVLFATQAS 727 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 + PP ++F T + Y+R+L +LR +F G P+R+ + Sbjct: 728 TKPPVIVLFTT--GFLEHGYRRFLERKLRESFGFEGSPVRIAVR 769 >gi|302185741|ref|ZP_07262414.1| GTP-binding protein EngA [Pseudomonas syringae pv. syringae 642] gi|330950783|gb|EGH51043.1| GTP-binding protein Der [Pseudomonas syringae Cit 7] Length = 490 Score = 259 bits (662), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 156/467 (33%), Positives = 245/467 (52%), Gaps = 10/467 (2%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ IA+VG PNVGKST+FNRL + + A+VG+ G+TRDR YG+A G + ++DT GI Sbjct: 1 MVPVIALVGRPNVGKSTMFNRLTRTRDAIVGDLSGLTRDRQYGEAKWQGRSYILIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + G + ++M +Q+ LAI EA ++LFL+D++AG T D I LRK+N +V+NK Sbjct: 61 S-GDEHGMDEKMAEQSLLAIEEADVVLFLVDARAGYTAADQMIGEHLRKRNKRSYVVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D E + + + ++ H G S++ + + F + + Sbjct: 120 IDNIDENLARAEFSPMGLGDAIPVAGAHGRGISQMLEIALREFPRDEDEPEEGVEVEEVA 179 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 + K K +K IA++GRPNVGKSTL+NR+LG +R++ + G TRD Sbjct: 180 EGQEAKRIPGPSEKDGIK-------IAIIGRPNVGKSTLVNRMLGEDRVIVYDEPGTTRD 232 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ I + + DTAG+RK +I E +E+ +V K++Q+++ I ++DA Sbjct: 233 SIYIPFERNEEKYTLIDTAGVRKRGKIHEEVEKFSVVKTLQAIKDANVVIFVMDAREGVV 292 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 DL ++ G A+V+ALNKWD ++ + + DI+ IS Sbjct: 293 DHDLNLLGFALEAGRALVIALNKWDGMTPGERDFVKIELERRLFFVDFADIHF--ISALH 350 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G G+ +L SV K TR TS L L+ ++ PP + +R +L+Y ++P Sbjct: 351 GTGVGNLYQSVQNSFKSAVTRWPTSRLTQILEDAVSEHAPPMVGSRRIKLRYAHLGGANP 410 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 P +I K+P+SY RYL N R L G PIR+ F+ +NPY Sbjct: 411 PLIVIHGNQVEKVPKSYVRYLENTYRRVLKLVGTPIRIEFKGGENPY 457 >gi|326797802|ref|YP_004315621.1| GTP-binding protein engA [Sphingobacterium sp. 21] gi|326548566|gb|ADZ76951.1| GTP-binding protein engA [Sphingobacterium sp. 21] Length = 433 Score = 259 bits (662), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 162/472 (34%), Positives = 241/472 (51%), Gaps = 60/472 (12%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL+NRL + + A+V + G+TRDR YGQA G F ++DT G G Sbjct: 5 IAIVGRPNVGKSTLYNRLTESRKAIVDDMSGVTRDRHYGQAEWVGKTFTVIDTGGYVHGS 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +Q +AI EA +ILF++D GIT D I LR+ N P+ +V NK+D Sbjct: 65 EDIFEAAIREQVLIAIEEASVILFMVDVTVGITDLDDDIAHLLRRSNKPVFVVVNKVDHH 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + Y+L EI IS+ GT EL + K F ++ EE Sbjct: 125 QLHTDASTFYALGLGEIYNISSMTGSGTGELLDEVVKHF--------------DEVQEE- 169 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 EG S P + A+VGRPNVGKS+ IN L+G R + +G TRDS+ I Sbjct: 170 -------EG-------SLP-KYAIVGRPNVGKSSFINALIGKERNIVTPIAGTTRDSIQI 214 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 +N H + DTAG+R+ +++ E++E +V ++++++ + I+++DAT E QD+ Sbjct: 215 HYNQFGHEFMLIDTAGLRRKTKVKENIEFYSVMRTIKALEEADVVILMIDATEGLESQDV 274 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 I VVL +NKWD+V D K +K + I +T Sbjct: 275 NIFHLAEKNKKGVVLLVNKWDLV--------DKDHKTLKRFEE-------EIRNKTAPFT 319 Query: 365 DDLMV--SVLEINKLWKT-------------RITTSYLNSWLQKTQLQNPPPTIFNRYNR 409 D +V SV+E +++K +I+TS LN + PPP +Y + Sbjct: 320 DYPIVFTSVIEKQRIFKAIEAATKVYENKYKKISTSKLNDVMLPIIENYPPPATKGKYIK 379 Query: 410 LKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 +KY+TQI P F FC P I + YKR++ N+LR +F +G+PI++ F+ Sbjct: 380 IKYVTQITGRSPMFAFFCNLPQYIKDPYKRFIENKLREHFDFTGVPIQIFFR 431 >gi|158316815|ref|YP_001509323.1| small GTP-binding protein [Frankia sp. EAN1pec] gi|158112220|gb|ABW14417.1| small GTP-binding protein [Frankia sp. EAN1pec] Length = 462 Score = 259 bits (662), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 152/462 (32%), Positives = 237/462 (51%), Gaps = 31/462 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ A+ NG F +VDT G + Sbjct: 28 LAVVGRPNVGKSTLVNRILGRRAAVVEDVPGVTRDRVAYDAVWNGRRFTLVDTGGW-EPD 86 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +A +++DQ A++ A +LF+ID+ G T D A+ L + P+I+ +NK+D Sbjct: 87 ARGLAARVSDQARAALDTADGVLFVIDATVGATDADEAVARVLHRSGRPVILAANKVDDA 146 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 A+ + ++SL E +SA H G+ +L + + E+ Sbjct: 147 RAEADAAALWSLGLGEPYPVSALHGRGSGDLLDAVLAVLP------------------EA 188 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P+E T E P R+A++GRPNVGKS+L+N+L G R L +G TRD V Sbjct: 189 PRERFTEE--------DGPRRVALIGRPNVGKSSLLNKLAGSERSLVHDVAGTTRDPVDE 240 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 DTAG+R+ + E + ++ ++ E IVLL A P +QD Sbjct: 241 LVTVGGETWMFIDTAGLRRRVKEASGAEYYSSLRTASALEAAEVAIVLLAADEPVTEQDQ 300 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 RI+ V + G A+VLA NKWD + + L DL + ++ L ++ IS RTG Sbjct: 301 RIISMVTDAGRALVLAFNKWDTLDTERRL--DLEQEIVRELGRVAWAPRVNISARTGRAT 358 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 D L ++ W TRI T LN+W+ + PPP+ + R+ + TQ PP F+ Sbjct: 359 DRLAPALRTSLDSWGTRIPTGRLNAWIGEVVAATPPPSRGGKLPRVLFATQAGVRPPRFV 418 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNP 466 +F T + +Y+R+L +LR +F +G PI + + + P Sbjct: 419 VFTT--GFLEPAYRRFLERKLREDFGFAGTPIEISIRVRERP 458 >gi|237747713|ref|ZP_04578193.1| GTP-binding protein engA [Oxalobacter formigenes OXCC13] gi|229379075|gb|EEO29166.1| GTP-binding protein engA [Oxalobacter formigenes OXCC13] Length = 446 Score = 259 bits (662), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 154/469 (32%), Positives = 251/469 (53%), Gaps = 31/469 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTLFNRL + + A+V ++PG+TRDR YG+ + F ++DT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRSRAALVADYPGLTRDRHYGEGRMGDRPFLVIDTGGFEPVV 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK---M 121 + ++M QT+ A+ EA +++F++D + GITP+D AIT +LRK P+I+ NK M Sbjct: 65 KEGVMQEMAKQTKQAVAEADVVIFIVDGRQGITPHDKAITDYLRKSGRPVILAVNKAEGM 124 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 +FYE+ L +V IS+ H G L K+ PL Sbjct: 125 KYTAVVADFYEL-GLGSDPLV-ISSAHGDGVHTLLDEALKMV-------PL--------- 166 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 SP E + +++ K +++A+VGRPNVGKST+IN LLG R++ G TRD+ Sbjct: 167 --SPAET-----EDEIESGQKHIKLAIVGRPNVGKSTMINALLGEERVIAFDLPGTTRDA 219 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 + I + + DTAG+RK ++ +++E+ +V K++Q++ ++L+DA + Sbjct: 220 IEIPFERDGKQYTLVDTAGLRKRGKVFQAIEKFSVVKTLQAISEANVVLLLMDAQQDISE 279 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTG 361 QD I V +G A+V+ +NKWD + + ++++++ + L + + +S Sbjct: 280 QDAHIAGFVLESGRALVVGINKWDGLDQ--DKRKEIKSEVERKLHFLSFAKFHYVSALKS 337 Query: 362 EGLDDLMVSVLEINKLWKTRITTSYLNSWLQKT-QLQNPPPTIFNRYNRLKYITQIQSSP 420 G+ LM S+ +++T L L++ + Q PP +L+Y Q +P Sbjct: 338 TGISALMRSIDSAYAAAMAKLSTPRLTRVLEEAVEHQQPPRKQGGTRPKLRYAHQGGQNP 397 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIK 469 P +I + I + YKRYL R FSL+G P+R+ F+S KNP+ K Sbjct: 398 PIIVIHGNSLDAISDDYKRYLEKHFRDAFSLTGTPLRIEFRSGKNPFAK 446 >gi|163856334|ref|YP_001630632.1| GTP-binding protein EngA [Bordetella petrii DSM 12804] gi|229710727|sp|A9IK66|DER_BORPD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|163260062|emb|CAP42363.1| putative GTP-binding protein [Bordetella petrii] Length = 451 Score = 259 bits (662), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 150/467 (32%), Positives = 244/467 (52%), Gaps = 24/467 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTLFNRL + + A+V ++ G+TRDR YG+ + F ++DT G Sbjct: 7 VALVGRPNVGKSTLFNRLTRSRAALVADYSGLTRDRHYGEGRVGDTPFIVIDTGGFEPVA 66 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIP-IIIVSNKMDT 123 I ++M QT AI EA +++FL+D++AG+ +DH I LRK +++ NK + Sbjct: 67 KTGILREMARQTRQAIAEADVVVFLVDARAGVNAHDHEIAQLLRKSGQQRVVLAVNKAEG 126 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 E + L ISA H G +L + + + P E + Sbjct: 127 MGVGNATSEFHELGLGTPYPISAAHGDGIVDLIGLALQDLVEPEP-------EPAPDAAD 179 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 P ++ +++A+VGRPNVGKSTLIN LLG R++ G TRD++ Sbjct: 180 LPPDHR--------------IKLAIVGRPNVGKSTLINTLLGEERVIAFDLPGTTRDAIE 225 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 I + + DTAG+R+ ++ E++E+ +V K++Q++ +++LDA +QD Sbjct: 226 IDFERDGRKYTLIDTAGLRRRGKVFEAVEKFSVIKTLQAIEASNVVLLMLDAQTEVSEQD 285 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 I V TG AVV+A+NKWD + ++ + + + + L + +TIS G+G Sbjct: 286 AHIAGFVLETGRAVVVAINKWDGLD--IDQRERIEREFRRKLRFLSFAPTHTISALKGQG 343 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 + ++ SV+ + +++T L L Q PPP +++Y Q +PP Sbjct: 344 IKPVLKSVVAAHAAAFAKLSTPKLTRELHAAVEQQPPPRKGIFRPKMRYAHQGGQNPPLV 403 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +I + IP+SY+RYL R R F L G P+R+ F+SS+NPY ++ Sbjct: 404 IIHGNALDAIPDSYRRYLETRFREAFKLDGTPLRIEFKSSRNPYTQE 450 >gi|325846572|ref|ZP_08169487.1| ribosome biogenesis GTPase Der [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481330|gb|EGC84371.1| ribosome biogenesis GTPase Der [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 438 Score = 259 bits (661), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 149/462 (32%), Positives = 256/462 (55%), Gaps = 33/462 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + +VG NVGKSTLFN+LV K+ A+ + G+TRDR+Y + G F + DT G+ Sbjct: 6 VTLVGRTNVGKSTLFNKLVGKRKAITEDENGVTRDRVYDKVEWTGKEFILADTGGLDISN 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +++ Q E A+ E+ LILF++D + GI P+D I+S LRK N +I+V+NK+D Sbjct: 66 KEIMNQEIKSQVEKALLESDLILFVVDGREGINPHDFEISSELRKYNKKVIVVANKIDRE 125 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + Y+ Y F ++V ISAE G+ L ++ K+ +E I+ +K + + Sbjct: 126 TIPDHIYDFYQFGFDDLVTISAE---GSKNLGDLLDKV---------VESIDFSKFDTDL 173 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 RIA++G+PN GKS+L+N LL R++ +G TRD++ Sbjct: 174 D-----------------ATRIAIIGKPNAGKSSLVNHLLNEERMIVTDIAGTTRDAIDT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 W +K++ + DTAG+R+ +++++++E +++ +V + E + L+DAT+ +QD Sbjct: 217 YWQYKDNNYVLIDTAGLRRKNKVSDNIEYYANQRTFDAVDSSEICLFLIDATVGVTEQDT 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIY--INTISGRTGE 362 +I N A+++A+NKWD V + N ++++ + I+N +Y I IS G+ Sbjct: 277 KIAGYAHNKRKAIIIAVNKWDKVEKETNTMRNME-REIRNKLSFA-LYAPIIFISVLKGQ 334 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 + DL+ + +N + TRI T LN+ LQ + PP + ++ YI+Q+Q++PP Sbjct: 335 RITDLLNLIEIVNSNYHTRIKTGVLNTILQDAIMMTAPPQDKGKRLKIYYISQVQTAPPK 394 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 FL+ + SY+RYL N++R N+SL G+P + K Sbjct: 395 FLLHVNDKELMHFSYQRYLENQIRQNYSLQGVPFTFEIRERK 436 >gi|307610240|emb|CBW99801.1| hypothetical protein LPW_15641 [Legionella pneumophila 130b] Length = 462 Score = 259 bits (661), Expect = 9e-67, Method: Compositional matrix adjust. Identities = 164/470 (34%), Positives = 245/470 (52%), Gaps = 31/470 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI IA+VG PNVGKSTLFNR+ K + A+V + PG+TRDR YG A F IVDT GI Sbjct: 1 MIPVIALVGRPNVGKSTLFNRITKTQDALVADFPGLTRDRQYGHAQHENKSFIIVDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + + M+ Q+++A+NEA++ILFL+D ++G+T D I LRK N + +V NK Sbjct: 61 GV-DDIEVDTLMSRQSQVALNEANVILFLVDGRSGLTGIDQQIAQALRKLNKKVHLVVNK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 D + SL +I ISA H G S L I + F EM E Sbjct: 120 TDGINEDIACADFQSLGITDIHAISASHGGGISSLLEEILEPF-------ITEMHEATD- 171 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 K ++IA GRPNVGKSTLINR+LG R++ G TRD Sbjct: 172 --------------------DKAIKIAFAGRPNVGKSTLINRILGEERVVVYDMPGTTRD 211 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+SI + ++ + DTAG+R+ SRI E +E+ +V K++Q+++ ++LLDA Sbjct: 212 SISIPFTREDKQYVLIDTAGVRRKSRIDEKIEKFSVIKTLQAIKEAHVCLLLLDANEGIT 271 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 QD+ ++ + +G A+V+A+NKWD + ++ + ++++ + L I IS Sbjct: 272 DQDMNLLGFIIESGKALVIAVNKWDGLEEEHK--EKIKSELSRRLHFANFAKIRFISALH 329 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G G+ L + E +T L LQ ++ PP I R +L+Y +P Sbjct: 330 GSGVGGLFKDINEAYHSAIQSFSTPKLTRLLQDISAKHTPPCINGRRIKLRYAHLGGHNP 389 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 P +I + +PESYKRYL N + L G P+++ F+ +NP+ K Sbjct: 390 PVIVIHGNQLDALPESYKRYLNNEFIKHLGLVGTPLKIEFKGGQNPFANK 439 >gi|116873379|ref|YP_850160.1| GTP-binding protein EngA [Listeria welshimeri serovar 6b str. SLCC5334] gi|123458584|sp|A0AK49|DER_LISW6 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|116742257|emb|CAK21381.1| GTPase family protein [Listeria welshimeri serovar 6b str. SLCC5334] Length = 436 Score = 259 bits (661), Expect = 9e-67, Method: Compositional matrix adjust. Identities = 148/463 (31%), Positives = 254/463 (54%), Gaps = 35/463 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST+FNR+V +++++V + PG+TRDR+Y A G FNI+DT GI D Sbjct: 6 VAIVGRPNVGKSTIFNRIVGERVSIVEDVPGVTRDRIYNSAEWLGKEFNIIDTGGI-DLS 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +Q+ Q E+AI+EA +I+F+ + + G+T D + L + N PI++ NK+D Sbjct: 65 DEPFLEQIRAQAEIAIDEADVIIFITNGREGVTDADEQVAKILYRSNKPIVLAINKVDNP 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + Y+ YSL F E IS H LG ++ + + +P + EE Sbjct: 125 EMRDQIYDFYSLGFGEPYPISGSHGLGLGDMLDAV----RAHFPK---------EEEEEY 171 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P + + + +++GRPNVGKS+++N LLG +R++ +G TRD++ Sbjct: 172 PDDTV---------------KFSLIGRPNVGKSSILNALLGEDRVIVSDIAGTTRDAIDT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 ++ + + DTAGMRK ++ ES E+ +V ++M+++ + +V+++A +QD Sbjct: 217 TYTFDGQDYVMIDTAGMRKRGKVYESTEKYSVLRAMRAIERSDVVLVVINAEEGIREQDK 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQ-IGDIYINTISGRTGEG 363 RI + G A+++ +NKWD ++ + ++ T+ I+ Q + I +S +T + Sbjct: 277 RIAGYAHDAGRAIIIVVNKWDAINKDEKTI-NVWTEDIREQFQFLSYAPIVFVSAKTKQR 335 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLK--YITQIQSSPP 421 L++L + +++ R+ +S LN + NP P +R RLK Y TQ+ PP Sbjct: 336 LNNLFPLINQVSDNHSLRVQSSMLNDVISDAVAMNPSP--MDRGKRLKIFYTTQVAVKPP 393 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 +F++F P + SY+R+L NR+R F G PIR+ + K Sbjct: 394 TFVVFVNDPELMHFSYERFLENRIREAFPFDGTPIRVIARKRK 436 >gi|134295839|ref|YP_001119574.1| GTP-binding protein EngA [Burkholderia vietnamiensis G4] gi|166224317|sp|A4JEN6|DER_BURVG RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|134138996|gb|ABO54739.1| small GTP-binding protein [Burkholderia vietnamiensis G4] Length = 445 Score = 259 bits (661), Expect = 9e-67, Method: Compositional matrix adjust. Identities = 162/469 (34%), Positives = 245/469 (52%), Gaps = 32/469 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+ + + +VDT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGERPYLVVDTGGFEPVA 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I +M QT A+ EA +++F++D + G+ P D +I +LRK PI +V NK + Sbjct: 65 KDGILHEMARQTRQAVEEADVVVFIVDGRNGLAPQDKSIADYLRKTGRPIFLVVNKAEGM 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + Y L + ISA H G +++ I + + Y P E +N+ Sbjct: 125 KYTAVATDFYELGLGDPRAISAAHGDGVTDM---INEALEVAYAGQPEEADDNDP----- 176 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 S+ ++IA+VGRPNVGKSTL+N L+G +R++ G TRDS+ + Sbjct: 177 ----------------SRGIKIAIVGRPNVGKSTLVNALIGEDRVIAFDMPGTTRDSIYV 220 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + DTAG+R+ ++ E++E+ +V K++QS+ I+LLDA QD Sbjct: 221 DFERNGKKYTLIDTAGLRRRGKVFEAIEKFSVVKTLQSISDANVVILLLDAQQDISDQDA 280 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSD--KLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 I V G A+V+ +NKWD + D + DL T+ +K L YI+ + +TG Sbjct: 281 HIAGFVVEQGRALVIGVNKWDGLDDHARDRAKADL-TRKLKFLDFAKSHYISA-AKKTGI 338 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWL-QKTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 G LM SV + ++ T L L + + Q P R +L+Y Q +PP Sbjct: 339 GA--LMRSVDDAYAAAMAKLPTPKLTRALIEAVEFQQPRRRGPVR-PKLRYAHQGGQNPP 395 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +I + + E+YKRYL NR R FSL+G P+R+ F+SS NPY K Sbjct: 396 LIVIHGNALDAVTETYKRYLENRFRETFSLTGTPLRIEFRSSNNPYADK 444 >gi|270291293|ref|ZP_06197515.1| ribosome-associated GTPase EngA [Pediococcus acidilactici 7_4] gi|304385042|ref|ZP_07367388.1| ribosome-associated GTPase EngA [Pediococcus acidilactici DSM 20284] gi|270280139|gb|EFA25975.1| ribosome-associated GTPase EngA [Pediococcus acidilactici 7_4] gi|304329236|gb|EFL96456.1| ribosome-associated GTPase EngA [Pediococcus acidilactici DSM 20284] Length = 435 Score = 259 bits (661), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 144/461 (31%), Positives = 242/461 (52%), Gaps = 30/461 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AIVG PNVGKST+FNR+ +++++V + PG+TRDR+Y + G FN++DT GI G Sbjct: 5 TVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYTHSEWLGRKFNLIDTGGIQIG 64 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + + +++ DQ ELAINEA +I+F++ + G++ D A+ L K + P+I+ NK+D Sbjct: 65 EEPFL-EEIRDQAELAINEADVIIFIVSVREGVSDADEAVAKILYKADKPVILAVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 +++ Y+ YSL F + +S H LG +L + F +K E I Sbjct: 124 PELRQDIYDFYSLGFGDPYPLSGSHGLGLGDLLDAVIANFPEKEAQEDDEAI-------- 175 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 R +++GRPNVGKS+L+N +LG R++ +G TRD++ Sbjct: 176 ---------------------RFSLIGRPNVGKSSLVNAILGEQRVIVSDIAGTTRDAID 214 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + + DTAGMRK +I E+ E+ +V ++M+++ +V+L+A +QD Sbjct: 215 TRFTSNGDEFVMVDTAGMRKKGKIYENTERYSVMRAMKAIDNSNVVLVVLNAEEGIREQD 274 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 RI G A+V+ +NKWD + + L + + + I +S T + Sbjct: 275 KRIAGYAHEAGRAIVIVVNKWDKLKKDNHSLSNFEQSIRQEFAYLSYAPIIFVSAVTKQR 334 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 L L + +++ + R+ +S LN L NP P+ + R+ Y TQ+ PP+F Sbjct: 335 LSQLPALIKRVDENHRRRVQSSTLNDVLMDAIAVNPTPSENGKRLRVYYGTQVSIQPPTF 394 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 +IF P+ + SY+R+L N++R F G P+ + + K Sbjct: 395 VIFVNDPDLMHFSYERFLENKIREAFDFEGTPVHLIERRRK 435 >gi|226357377|ref|YP_002787117.1| GTP-binding protein EngA [Deinococcus deserti VCD115] gi|259645869|sp|C1D094|DER_DEIDV RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|226319367|gb|ACO47363.1| putative GTP-binding protein [Deinococcus deserti VCD115] Length = 441 Score = 259 bits (661), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 136/467 (29%), Positives = 260/467 (55%), Gaps = 38/467 (8%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 ++ +AIVG PNVGKS+LFNRL+ ++ AVV + PG+TRD G + + +VDT G+ Sbjct: 1 MHKVAIVGRPNVGKSSLFNRLIGRREAVVADFPGVTRDAKEGLMLYHNHRITLVDTGGLW 60 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 G A + ++ E A+ A ++F++D + G++ D+ + +LR+ P+I+V+NK+ Sbjct: 61 SGDEWEAA--IREKAEWAMEGAQAVVFVLDPREGLSAADYEVADWLRRVGKPVIVVANKI 118 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D+ + E++ L F + V ISAEH G EL + M + Sbjct: 119 DSPKHEVYLAELWGLGFGDPVAISAEHARGLDELLDRV--------------MTHLPADD 164 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 E+ P+ P+RI+++GRPNVGKS+L+N + +R + Q G TRDS Sbjct: 165 EDVPE--------------VAPIRISLIGRPNVGKSSLLNAITNTDRAIVADQPGTTRDS 210 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 + + W++ + DTAG+RK + ++E +++S +++ + ++++AT Sbjct: 211 LDVEWDFGGQRFVLVDTAGIRK--KPDTAIEDYAIQRSQAAIQRSDLIWLVVNAT-DMGD 267 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVSDK-LNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 +L++ + + +G V++ +NKWD+V D+ L + + + ++ +Y + I+ Sbjct: 268 HELKLANLAYESGKPVIVVVNKWDLVPDEELKRTEKDLNQKLHHISFAPRVYTSAINDY- 326 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G+ +++ ++++ W++RI TS LN WL+ Q++ P + ++ ++TQ++++P Sbjct: 327 --GIHEMLAEAMKLHDKWQSRIPTSELNRWLEVWQMRQAVPNFHGKKLKMYFMTQVETAP 384 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 P+F IFC + + +Y+ YL NR+R + L+G+P+R+ + + K PY Sbjct: 385 PTFAIFCNRADFVTRAYEGYLQNRIREDLQLAGVPVRLKW-NEKGPY 430 >gi|261749359|ref|YP_003257044.1| GTP-binding protein EngA [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497451|gb|ACX83901.1| GTP-binding protein EngA [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 439 Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 157/463 (33%), Positives = 254/463 (54%), Gaps = 28/463 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M Y ++IVG PNVGKSTLFNRLV ++ A+V G+TRDR+YG++ NGV F++VDT G Sbjct: 1 MSYIVSIVGRPNVGKSTLFNRLVGRRKAIVHVRSGVTRDRIYGESEWNGVHFSLVDTGGY 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + ++ Q +AI EA +ILFL+D K GI D I+ LRK I++V NK Sbjct: 61 NPIHKNLLDAEIIKQILIAIKEADVILFLVDIKIGILDTDVEISQLLRKYKKYILLVVNK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D + + + L F+E ISA + GT EL + +IFK Sbjct: 121 VDNGKYMYHNTDFFCLGFREYYYISAINGSGTGELLDRLIEIFK---------------- 164 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 S GK + R +V+GRPNVGKSTLIN L N + + SG TRD Sbjct: 165 ----------SLGKREIMEKEVLPRFSVIGRPNVGKSTLINSFLEKNHHIVTNVSGTTRD 214 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ + + + DT G+RK S+I+ESLE + ++++S+ + + +++DA +E Sbjct: 215 SLDVFCKKLGYKCILVDTPGVRKKSKISESLEFYSTMRTVKSIESTDICFLMVDAVRGWE 274 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLN--LLQDLRTKAIKNLPQIGDIYINTISG 358 QD I V +++ +NKWD+++ + N L ++ K + ++ I IS Sbjct: 275 AQDRNIFRLVERNQKGIIILINKWDLLNSEKNCSLQKNFEIFIRKKIAPFDNVPILFISA 334 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 + +G+ +++ ++ ++ K R+ T+ LN + +NPPP++ + +KY TQ+ + Sbjct: 335 KNKDGIYNILPIADQVFQIRKKRLKTNLLNRVMLPIFQKNPPPSVQKKLITIKYCTQLPT 394 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 S P F+ F FP+ I +SYKR++ N++R +F G+PI++ F+ Sbjct: 395 STPKFIFFSNFPHYIKKSYKRFIENKIRDHFDFRGVPIQILFR 437 >gi|120437317|ref|YP_863003.1| GTP-binding protein EngA [Gramella forsetii KT0803] gi|166198719|sp|A0M5P1|DER_GRAFK RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|117579467|emb|CAL67936.1| GTP-binding protein EngA [Gramella forsetii KT0803] Length = 434 Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 142/457 (31%), Positives = 240/457 (52%), Gaps = 29/457 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST FNRL++++ A++ + G+TRDR YG++ NG F+++DT G G Sbjct: 5 VAIVGRPNVGKSTFFNRLIQRREAIIDSVSGVTRDRHYGKSDWNGKKFSLIDTGGYVKGS 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +++ Q ELAI+EA I+F++D ++G+T D + + LR+ N P+++ NK+D Sbjct: 65 DDIFEAEIDKQVELAIDEADAIIFIVDVESGVTSMDEEVANLLRRVNKPVLLAVNKVDNN 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 N E YSL E I++ + GT +L + + + E+ Sbjct: 125 KRLANAVEFYSLGLGEYFPIASTNGSGTGDLLDALIEALPEIEEEDESEL---------- 174 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 R AVVGRPN GKS+ IN L+G +R + +G TRDS+ Sbjct: 175 -------------------PRFAVVGRPNAGKSSFINALIGEDRYIVTDIAGTTRDSIDT 215 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 +N + DTAG+R+ S++ E+LE +V +S++++ C+ +V+LDAT F+ Q Sbjct: 216 RYNRFGFEFNLVDTAGIRRKSKVKENLEFYSVMRSVRAIENCDVCLVVLDATRGFDGQVQ 275 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 I +V+ +NKWD+V + N +++ + + D+ I IS T + + Sbjct: 276 NIFWLAQRNHKGIVILVNKWDLVDKETNTMKEYEAMIRREIEPFTDVPIVFISVLTKQRV 335 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 + + +++ + +I T N + +NPPP +Y ++K+ Q+ + P F Sbjct: 336 FKAIETAVKVFESRSKKIKTRQFNDVMLPIIERNPPPAYKGKYVKIKFCMQLPTPHPQFA 395 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 FC P + + YKR+L N+LR F G+PI + F+ Sbjct: 396 FFCNLPQYVRDPYKRFLENKLRQEFDFQGVPISIFFR 432 >gi|167040606|ref|YP_001663591.1| GTP-binding protein EngA [Thermoanaerobacter sp. X514] gi|300914647|ref|ZP_07131963.1| ribosome-associated GTPase EngA [Thermoanaerobacter sp. X561] gi|307724119|ref|YP_003903870.1| ribosome-associated GTPase EngA [Thermoanaerobacter sp. X513] gi|238687595|sp|B0K3E4|DER_THEPX RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|166854846|gb|ABY93255.1| small GTP-binding protein [Thermoanaerobacter sp. X514] gi|300889582|gb|EFK84728.1| ribosome-associated GTPase EngA [Thermoanaerobacter sp. X561] gi|307581180|gb|ADN54579.1| ribosome-associated GTPase EngA [Thermoanaerobacter sp. X513] Length = 439 Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 147/453 (32%), Positives = 249/453 (54%), Gaps = 30/453 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 ++IVG PNVGKSTLFN+++ K++++V + PG+TRDR+YG A F +VDT G+ Sbjct: 6 VSIVGRPNVGKSTLFNKIMGKRISIVEDKPGVTRDRIYGNAEWLDKKFILVDTGGLDPNA 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 + ++ Q E AI+ + +ILFL+D+K G+ P D I + LR+ +I+V NK+D+ Sbjct: 66 EDILFSKVRLQVEAAIDTSDVILFLVDAKEGLMPEDEEIANILRRAKKEVILVCNKVDSF 125 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + +Y+ +SL + ISA + LG EL + K + P LE E Sbjct: 126 KEMPPTYYDFFSLGLGNPIPISASNGLGIGELLDEVVK----RLPQEELEYTEET----- 176 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 ++IAV+G+PNVGKS+L+N++LG R++ + G TRD++ Sbjct: 177 --------------------IKIAVIGKPNVGKSSLVNKILGEERVIVSNIPGTTRDAID 216 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 ++ + DTAG+R+ SRI+ES+E+ +V +++ ++ + ++++DAT +QD Sbjct: 217 TPFSKDGKNYVLIDTAGIRRKSRISESIERYSVLRALAAIERSDICLLMIDATEGPTEQD 276 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 +I F G +++ +NKWD + N + + + L I I IS +TG+ Sbjct: 277 TKIAGYAFENGKGIIIVVNKWDAIKKDNNTVNEYTKMVREKLSFISFAPILFISAKTGQR 336 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 + ++ +V ++ + + RITT LN+ L + L PPP + ++ Y +Q+ PPSF Sbjct: 337 VHRVLETVDKVWEEYNKRITTGLLNNVLNEAILMFPPPADKGKPLKVYYTSQVGIKPPSF 396 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 ++F P + SY R++ N LR NF G+PI Sbjct: 397 VVFVNEPELMHFSYLRFIENTLRQNFGFEGVPI 429 >gi|227484953|ref|ZP_03915269.1| GTP-binding protein [Anaerococcus lactolyticus ATCC 51172] gi|227237108|gb|EEI87123.1| GTP-binding protein [Anaerococcus lactolyticus ATCC 51172] Length = 439 Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 150/458 (32%), Positives = 243/458 (53%), Gaps = 29/458 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + +VG NVGKSTLFNRLV K+ ++ + G+TRDR+ +A F +VDT GI Sbjct: 6 VTLVGRTNVGKSTLFNRLVGKRKSITEDVSGVTRDRIVDKAEWQNNEFLLVDTGGIDISS 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + ++ Q E A+ E +LILF++D K G+ P+D I + +RK N P+IIV+NK+D Sbjct: 66 KDMMNVEIRGQVEKALLETNLILFVVDGKEGVNPHDVDIANEIRKYNKPVIIVANKVDNM 125 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + Y+ YS F +V ISAE G +L I E N ++E+ Sbjct: 126 QVPDDLYDFYSFGFDNLVMISAEQAKGLGDLLDAIISYI-------DFSQFEGN--DDET 176 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 RIA++G+PN GKS+L+N LL +R++ +G TRD+V Sbjct: 177 --------------------RIAIIGKPNAGKSSLVNLLLNEDRMIVTDIAGTTRDAVDS 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 W + +H + DTAG+R+ S++ E++E +++ +V + E + L+DAT+ +QD Sbjct: 217 YWTYNDHNYVLIDTAGLRRKSKVKENIEYYANQRTFDAVDSAEICLFLIDATVGVTEQDA 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 +I N A+++A+NKWD+V N + ++ + K L I IS + + + Sbjct: 277 KIAGYAHNNKKAIIIAVNKWDLVEKDTNTMAEMEKEIRKTLSFALYAPIVFISVKDNDRI 336 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 D L+ + ++ ++ RI T LN+ LQ L N PP + ++ Y++Q+ + PP FL Sbjct: 337 DTLLDMIEVVDNNYRMRIKTGVLNTILQDAMLINQPPQDKGKRLKIYYMSQVGTCPPKFL 396 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 + + SY RYL N++R N+SL G+P F+ Sbjct: 397 LSINDRELLHFSYTRYLENQIRQNYSLVGVPFSFVFKE 434 >gi|319789668|ref|YP_004151301.1| ribosome-associated GTPase EngA [Thermovibrio ammonificans HB-1] gi|317114170|gb|ADU96660.1| ribosome-associated GTPase EngA [Thermovibrio ammonificans HB-1] Length = 479 Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 148/483 (30%), Positives = 256/483 (53%), Gaps = 36/483 (7%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 +AIVG PNVGKS+LFNRL+ +K+A++ N PG+TRDR+ +A I+ +VDT G+ + Sbjct: 6 VVAIVGRPNVGKSSLFNRLLGRKVAIIDNTPGVTRDRVVQEADIDEHKVVLVDTGGVVEK 65 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 AK+ +Q + A+ EA +I+F++D + GI P D + LR+ P+I+ NK+D Sbjct: 66 DAHEFAKETTEQAKRAMEEADVIVFVVDGQEGINPLDEEVAKLLRRWKKPVIVAVNKIDE 125 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + Y+ Y L F E++ IS H +G L I +K P E + + EE Sbjct: 126 PFMEDLVYDFYRLGFDEVIPISTIHKIGIPTLKEKIL----EKLPQELKESAQRAYQREE 181 Query: 184 SPKEN---ITSEGKSSVKNIS-----------------KPLRIAVVGRPNVGKSTLINRL 223 K+ I+ E ++ +S +P+++A+VGRPN+GKSTL+N L Sbjct: 182 KSKKAEQLISGESPEELQELSASLERGEEYEIEEEEEKEPIKVAIVGRPNMGKSTLLNAL 241 Query: 224 LGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSV 283 +G R + G TRD++ + DTAG+R+ +I + +E + +S+ ++ Sbjct: 242 VGEERAIVSDIPGTTRDAIDTYVRVGDDEFIFIDTAGIRRRGKIKD-IEYYSYLRSLDAI 300 Query: 284 RTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSD-----KLNLLQDLR 338 + ++++DA ++D +I +V+A+NK D + D +L DL Sbjct: 301 DRADVVVLMVDAQEGPTERDAKIAGMALEKFKPIVIAVNKIDTLKDQKEWERLQRELDLV 360 Query: 339 TKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQN 398 I P++ IS + +GL +L+ + ++ + + ++ T N L++ + Sbjct: 361 FDFIPFAPRV------FISAKERKGLKELLKQIKDLYRQYTKKVRTGEFNRTLRELMEIH 414 Query: 399 PPPTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 PP N+ ++ Y TQ+++ PP+FL+F +P IP+S++R+L NRLR F + IPIR+ Sbjct: 415 QPPVYKNKIVKIYYGTQVKTKPPTFLLFSNYPEGIPKSFRRFLENRLREKFGFNKIPIRI 474 Query: 459 CFQ 461 F+ Sbjct: 475 VFK 477 >gi|167037254|ref|YP_001664832.1| GTP-binding protein EngA [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256752010|ref|ZP_05492879.1| small GTP-binding protein [Thermoanaerobacter ethanolicus CCSD1] gi|320115673|ref|YP_004185832.1| ribosome-associated GTPase EngA [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|238687651|sp|B0K8N3|DER_THEP3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|166856088|gb|ABY94496.1| small GTP-binding protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256749120|gb|EEU62155.1| small GTP-binding protein [Thermoanaerobacter ethanolicus CCSD1] gi|319928764|gb|ADV79449.1| ribosome-associated GTPase EngA [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 439 Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 146/453 (32%), Positives = 248/453 (54%), Gaps = 30/453 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 ++IVG PNVGKSTLFN+++ K++++V + PG+TRDR+YG F +VDT G+ Sbjct: 6 VSIVGRPNVGKSTLFNKIMGKRISIVEDKPGVTRDRIYGNVEWLDKKFILVDTGGLDPNA 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 + ++ Q E AI+ + +ILFL+D+K G+ P D I + LR+ +I+V NK+D+ Sbjct: 66 EDILFSKVRLQVEAAIDASDVILFLVDAKEGLMPEDEEIANILRRAKKEVILVCNKVDSF 125 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + +Y+ +SL + ISA + LG EL + K K P LE E Sbjct: 126 KEMPPTYYDFFSLGLGNPIPISASNGLGIGELLDEVVK----KLPQEELEYTEET----- 176 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 ++IAV+G+PNVGKS+L+N++LG R++ + G TRD++ Sbjct: 177 --------------------IKIAVIGKPNVGKSSLVNKILGEERVIVSNIPGTTRDAID 216 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 ++ + DTAG+R+ SRI+ES+E+ +V +++ ++ + ++++DAT +QD Sbjct: 217 TPFSKDGKNYVLIDTAGIRRKSRISESIERYSVLRALAAIERSDICLLMIDATEGPTEQD 276 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 +I F G +++ +NKWD + N + + + L I I IS +TG+ Sbjct: 277 TKIAGYAFENGKGIIIVVNKWDAIKKDNNTVNEYTKMVREKLSFISFAPILFISAKTGQR 336 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 + ++ +V ++ + + RITT LN+ L + L PPP + ++ Y +Q+ PPSF Sbjct: 337 VHRVLETVDKVWEEYNKRITTGLLNNVLNEAMLMFPPPADKGKPLKVYYTSQVGIKPPSF 396 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 ++F P + SY R++ N LR NF G+P+ Sbjct: 397 VVFVNEPELMHFSYLRFIENTLRQNFGFEGVPV 429 >gi|118594978|ref|ZP_01552325.1| GTP-binding protein EngA [Methylophilales bacterium HTCC2181] gi|118440756|gb|EAV47383.1| GTP-binding protein EngA [Methylophilales bacterium HTCC2181] Length = 474 Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 163/469 (34%), Positives = 248/469 (52%), Gaps = 39/469 (8%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 ++AIVG PNVGKS+LFNRL K + A+V + PG+TRDR YG+ I F +VDT G Sbjct: 3 SVAIVGRPNVGKSSLFNRLTKSRDALVADLPGLTRDRHYGKITIEDAQFILVDTGGFEPK 62 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 K IAK+M QT LAI+E +ILF++D + G+ P D I +RK + I++ NK + Sbjct: 63 KKIGIAKKMALQTLLAIDECDVILFVVDGREGLHPIDQHIADVIRKNDKEKILLINKTEG 122 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + YSL FK I+ IS+ H G L ++ + NH Sbjct: 123 MQHEIVGADFYSLGFKNILSISSAHGEGVGLLKELLVDL------NHQ------------ 164 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 SE +S K K I +VGRPNVGKSTL+N L+G R + Q+G TRD+VS Sbjct: 165 ------DSEPQSIFKGAPK---ITIVGRPNVGKSTLVNALVGEERFIVFDQAGTTRDAVS 215 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + +++ + DTAG+RK ++ E++E+ +V K++ +V + + I+++D++ QD Sbjct: 216 VDFDFNGDRFVLTDTAGIRKKGKVFETVEKFSVLKTLAAVESSDVIILVIDSSGGIATQD 275 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKN-----LPQIGDIYINTISG 358 + ++ + TG ++V+A+NKWD VS +AIKN LP + IS Sbjct: 276 MHLIGFILETGKSIVIAINKWDSVS-------AYEREAIKNDIDLKLPFVNFAEKVFISA 328 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 GL LM SV++ + + +T +N L L + P I +LK+ Q Sbjct: 329 LKETGLKGLMRSVIKAYESSSRKFSTPQINEVLANAILSHQPKIIKGIRPKLKFAHQGGL 388 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 +PP+ +I I + Y RYL R F+L G P+R+ ++ KNPY Sbjct: 389 NPPTIIIHGNHLTDIRKDYVRYLETFFRKAFNLVGTPLRVELKNGKNPY 437 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/172 (25%), Positives = 78/172 (45%), Gaps = 11/172 (6%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 + +A+VGRPNVGKS+L NRL L G+TRD ++ + DT G Sbjct: 2 ISVAIVGRPNVGKSSLFNRLTKSRDALVADLPGLTRDRHYGKITIEDAQFILVDTGGFEP 61 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 +I + +K +++ ++ C+ + ++D D I D + +L +NK Sbjct: 62 KKKI--GIAKKMALQTLLAIDECDVILFVVDGREGLHPIDQHIADVIRKNDKEKILLINK 119 Query: 324 WDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEIN 375 + + ++ + D + KN I +IS GEG+ L ++++N Sbjct: 120 TEGMQHEI-VGADFYSLGFKN--------ILSISSAHGEGVGLLKELLVDLN 162 >gi|70726437|ref|YP_253351.1| GTP-binding protein EngA [Staphylococcus haemolyticus JCSC1435] gi|123660249|sp|Q4L6I0|DER_STAHJ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|68447161|dbj|BAE04745.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 436 Score = 258 bits (659), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 147/456 (32%), Positives = 244/456 (53%), Gaps = 31/456 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST+FNR+V +++++V + PG+TRDR+Y FNI+DT GI G Sbjct: 6 VAIVGRPNVGKSTIFNRVVGERVSIVEDTPGVTRDRIYSSGEWLTHEFNIIDTGGIEIG- 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + Q+ Q E+AI+EA +I+F+++ + G+T D + L K P+++ NK+D Sbjct: 65 DAPFQTQIRAQAEIAIDEADVIIFMVNVREGLTQSDEMVAQMLYKSKKPVVLAVNKVDNP 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + ++ YSL F + IS H LG +L + K F ++ E+S Sbjct: 125 EMRNDIFDFYSLGFGDPYPISGSHGLGLGDLLDEVVKHFDEE--------------TEDS 170 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 E+ +R++++GRPNVGKS+L+N +LG +R++ + +G TRD+V Sbjct: 171 YDEDT--------------IRLSIIGRPNVGKSSLVNAILGEDRVIVSNVAGTTRDAVDT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 +++ + DTAGMRK ++ ES E+ +V ++++++ ++++DA +QD Sbjct: 217 EYSYDGQDYVLIDTAGMRKKGKVYESTEKYSVLRALKAIERSNVVLIVIDAEEGIIEQDK 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGD-IYINTISGRTGEG 363 R+ G AVV+ +NKWD V N ++ ++N Q D I +S + G Sbjct: 277 RVAGYAHEEGKAVVIVVNKWDTVDKDSNTMKKF-ADDVRNQFQFLDYAQIAFVSAKEGTR 335 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 L L + E ++ K R+ +S LN + NP PT R + Y TQ+ + PP+F Sbjct: 336 LRTLFPYINEASENHKKRVQSSTLNEVVTDAISMNPTPTDKGRRLNVFYTTQVANEPPTF 395 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 ++F + SYKRYL N++R F G PI + Sbjct: 396 VVFVNDVELMHFSYKRYLENQIRHAFGFEGTPIHII 431 >gi|88703668|ref|ZP_01101384.1| GTP-binding protein engA [Congregibacter litoralis KT71] gi|88702382|gb|EAQ99485.1| GTP-binding protein engA [Congregibacter litoralis KT71] Length = 495 Score = 258 bits (659), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 146/468 (31%), Positives = 250/468 (53%), Gaps = 9/468 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +IA+VG PNVGKSTLFN+L + + A+V N G+TRDR YG+ + F ++DT G+ Sbjct: 1 MLPSIALVGRPNVGKSTLFNQLTRSRDALVANLSGLTRDRKYGEGRSDDRAFIVIDTGGV 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + G I M +Q+ LAI EA ++L L+D++ G+ P D + +LR+++ +V NK Sbjct: 61 S-GDEEGIDAAMAEQSLLAIEEADIVLLLVDARDGLNPVDEQLVQYLRQQSRDFHLVVNK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D R + ++L + I+A H G ++ + + + Y HP ++ + Sbjct: 120 IDGRDPDVAVSDFHALGIASMHAIAASHGRGVRQMIESVLETIPRSY-EHPEAEGDSEEE 178 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 E ++ + R+A+VGRPNVGKSTL+NR+LG R++ Q G TRD Sbjct: 179 GGIEGSGAEQGEDEAEDHGGT---RVAIVGRPNVGKSTLVNRILGEERVVVYDQPGTTRD 235 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 SV I + + P + DTAG+R+ + E++E+ ++ K++ ++ ++L+D Sbjct: 236 SVYIKFVREGRPYTLIDTAGVRRRKNVREAIEKFSIIKTLSAISDANVVVLLVDGQEGLV 295 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVS-DKLNLLQDLRTKAIKNLPQIGDIYINTISGR 359 QDL ++ G A+VLA+NKWD + D+ +++ + ++ + D++ IS Sbjct: 296 DQDLHLLGHCLEAGRALVLAVNKWDGLDPDQKEMIRSELDRRLR-FVEFADMHF--ISAL 352 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 G G+ L S+ + TS L L++ +PPP + R +L+Y + Sbjct: 353 HGSGVGTLFGSIDAAYAAAMQPMGTSRLTRILEEAVADHPPPLVNGRRIKLRYAHAGGRN 412 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 PP ++ +K+P SY+RYL L+G P+R+ F+SS NP+ Sbjct: 413 PPRVVVHGNQTDKVPNSYQRYLEKVFSRRLELTGTPLRIEFRSSDNPF 460 >gi|327440787|dbj|BAK17152.1| predicted GTPase [Solibacillus silvestris StLB046] Length = 436 Score = 258 bits (659), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 144/456 (31%), Positives = 244/456 (53%), Gaps = 29/456 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 IAIVG PNVGKST+FNR+V +++++V + PG+TRDR+Y A FNI+DT GI G Sbjct: 5 VIAIVGRPNVGKSTIFNRIVGERVSIVEDIPGVTRDRIYSSADWLAHEFNIIDTGGIEIG 64 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + +Q+ Q E+AI+EA +I+F+ + + G+T D + L K P+++ NK+D Sbjct: 65 DEPFL-EQIRQQAEIAIDEADVIIFMTNGREGVTAADEQVAKILYKTKKPVVLAINKIDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + Y+ YSL F E IS H LG +L K F Q +EE Sbjct: 124 PDMRHMIYDFYSLGFGEPWPISGSHGLGLGDLLDECAKHFPQP--------------DEE 169 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 ++ ++ +++GRPNVGKS+L+N LG +R++ G TRD++ Sbjct: 170 QYDDDT--------------IKFSLIGRPNVGKSSLVNAFLGQDRVIVSEIQGTTRDAID 215 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 +++ I DTAGMRK ++ ES E+ +V ++++++ + +V+L+A ++QD Sbjct: 216 SPYSYDGQDYVIIDTAGMRKKGKVYESTEKYSVLRALRAIERSDVVLVVLNADEGIQEQD 275 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 +I G AV++ +NKWD + + + ++ + I +S +T + Sbjct: 276 KKIAGYAHEAGKAVIIVVNKWDAIEKDEKTMNIFTEQIREHFLFLDYAPIVFVSAKTKQR 335 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 + +++ + +++ RI +S LN ++ + +NP PT R R+ Y TQ+ PP+F Sbjct: 336 VHNILPIIKRVSENHAMRIQSSILNEVIEDSIARNPAPTDKGRRLRIYYATQVAIKPPTF 395 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 ++F P + SY+R+L NR+R F G PIR+ Sbjct: 396 VVFVNEPEMMHFSYERFLENRIRETFDFEGTPIRLI 431 >gi|296117980|ref|ZP_06836563.1| ribosome-associated GTPase EngA [Corynebacterium ammoniagenes DSM 20306] gi|295969211|gb|EFG82453.1| ribosome-associated GTPase EngA [Corynebacterium ammoniagenes DSM 20306] Length = 539 Score = 258 bits (659), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 152/462 (32%), Positives = 246/462 (53%), Gaps = 40/462 (8%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI- 60 + T+AIVG PNVGKS+L NR + ++ AVV +HPG+TRDR+ NG F + DT G Sbjct: 103 LCTVAIVGRPNVGKSSLVNRFLGRREAVVEDHPGVTRDRISYIGDWNGQRFFVQDTGGWD 162 Query: 61 --ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVS 118 A G + +IA+Q E+A+ A +I+F++D+K GIT D + L++ ++P+I+V+ Sbjct: 163 PNAKGIHGAIARQ----AEVAMETADVIVFVVDTKVGITETDSVMARKLQRSDVPVILVA 218 Query: 119 NKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 NK D+ + E Y+L + +SA+H G +++ + K+F ++ P H Sbjct: 219 NKFDSDSMYADMAEFYALGLGDPWPVSAQHGRGGADVLDEVLKLFPEQ-PRH-------- 269 Query: 179 KRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 SS+ + P R+A+VG+PNVGKS+L+N++ G R + + SG T Sbjct: 270 ----------------SSI--TAGPRRVALVGKPNVGKSSLLNKITGQERSVVDNVSGTT 311 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 D V DTAG+RK + + E ++ + E ++L+DA+ Sbjct: 312 VDPVDSLVQLDKQLWRFVDTAGLRKKVKNAQGHEYYASLRTRGVIDAAEVCVMLIDASQE 371 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWD-MVSDKLNLLQDLRTKAIKNLPQIGDIYINTIS 357 +QD R+++ V G A+V+A NKWD M D+ L + + +LP + I I+ + Sbjct: 372 ISEQDQRVLNMVLEAGKALVIAFNKWDLMDEDRRYYLDREIDQQLAHLPWVTRINISAET 431 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 GR+ + L+ M+ LE W R+TT LN+W++ NPPP NR R+ + TQ Sbjct: 432 GRSLQRLEPAMIEALE---GWDKRVTTGQLNNWMRDAIAANPPPMKNNRLPRVLFATQAG 488 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 + PP+ ++F T + Y+RYL + R NF G P+R+ Sbjct: 489 TQPPTIVLFTT--GFLDAGYRRYLERKFRENFGFHGTPVRIA 528 >gi|289435286|ref|YP_003465158.1| GTPase family protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171530|emb|CBH28074.1| GTPase family protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|313632616|gb|EFR99602.1| ribosome-associated GTPase EngA [Listeria seeligeri FSL N1-067] gi|313637164|gb|EFS02696.1| ribosome-associated GTPase EngA [Listeria seeligeri FSL S4-171] Length = 436 Score = 258 bits (659), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 148/463 (31%), Positives = 254/463 (54%), Gaps = 35/463 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST+FNR+V +++++V + PG+TRDR+Y A G FNI+DT GI D Sbjct: 6 VAIVGRPNVGKSTIFNRIVGERVSIVEDVPGVTRDRIYNSAEWLGKDFNIIDTGGI-DLS 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +Q+ Q E+AI+EA +I+F+ + + G+T D + L + N PI++ NK+D Sbjct: 65 DEPFLEQIRAQAEIAIDEADVIIFITNGREGVTDADEQVAKILYRSNKPIVLAINKVDNP 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + Y+ YSL F E IS H LG ++ + + +P + EE Sbjct: 125 EMRDQIYDFYSLGFGEPYPISGSHGLGLGDMLDAV----RAHFPK---------EEEEEY 171 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P + + + +++GRPNVGKS+++N LLG +R++ +G TRD++ Sbjct: 172 PDDTV---------------KFSLIGRPNVGKSSILNALLGEDRVIVSDIAGTTRDAIDT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 ++ + + DTAGMRK ++ ES E+ +V ++M+++ + +V+++A +QD Sbjct: 217 TYTFDGQDYVMIDTAGMRKRGKVYESTEKYSVLRAMRAIERSDVVLVVINAEEGIREQDK 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQ-IGDIYINTISGRTGEG 363 RI + G A+++ +NKWD ++ + ++ T+ I+ Q + I +S +T + Sbjct: 277 RIAGYAHDAGRAMIIVVNKWDAINKDEKTI-NVWTEDIREQFQFLSYAPIVFVSAKTKQR 335 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLK--YITQIQSSPP 421 L++L + +++ R+ +S LN + NP P +R RLK Y TQ+ PP Sbjct: 336 LNNLFPLINQVSDNHSLRVQSSMLNDVISDAVAMNPSP--MDRGKRLKIFYTTQVAVKPP 393 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 +F++F P + SY+R+L NR+R F G PIR+ + K Sbjct: 394 TFVVFVNDPELMHFSYERFLENRIRDAFPFDGTPIRVIARKRK 436 >gi|225011402|ref|ZP_03701840.1| small GTP-binding protein [Flavobacteria bacterium MS024-2A] gi|225003905|gb|EEG41877.1| small GTP-binding protein [Flavobacteria bacterium MS024-2A] Length = 434 Score = 258 bits (659), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 148/462 (32%), Positives = 242/462 (52%), Gaps = 39/462 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST FNR+++K+ A+V + G+TRDR YG++ NG F ++DT G +G Sbjct: 5 VAIVGRPNVGKSTFFNRMIQKREAIVDSISGVTRDRHYGKSDWNGRNFTLIDTGGYVEGS 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + K+++ Q LAI EA +I+F++D G+T D I LR+ PI + NK+D Sbjct: 65 DDIFQKEIDKQVNLAIEEADVIVFMVDVMDGVTGMDEVIADLLRRSQKPIFLAINKVDNA 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + E YSL F++ IS+ + G+ EL I K K P + Sbjct: 125 QRLESTLEFYSLGFEQFYCISSVNGGGSGELLDDIVK----KLPEEEEREED-------- 172 Query: 185 PKENITSEGKSSVKNISKPL-RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 PL R AVVGRPN GKS+ IN L+G +R + +G TRDS+ Sbjct: 173 ------------------PLPRFAVVGRPNAGKSSFINSLIGKDRYIVTDIAGTTRDSID 214 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 +N + DTAG+R+ +++ E +E +V +S++++ C+ ++++D T F+ Q Sbjct: 215 TQYNRFGFDFNLVDTAGIRRKAKVKEDIEFYSVMRSVRAIEYCDVCLLVVDGTRGFDGQ- 273 Query: 304 LRIVDSVFNTGH----AVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGR 359 V ++F H +V+ +NKWD+V N + K + + D+ I IS Sbjct: 274 ---VQNIFWLAHRNNKGIVILVNKWDLVDKDTNASKAYEAKIREEIAPFTDVPIVFISSI 330 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 + + + + + +E+ K RI T N+ + + PPP +Y ++K+ TQ+ + Sbjct: 331 SKQRIFKAVETAVEVYKSRSRRIPTKAFNNTMLPIIEKTPPPAYKGKYVKIKFCTQLPTP 390 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 P F FC P + + Y+R+L N+LR + +GIPI++ F+ Sbjct: 391 HPQFAFFCNLPQYVKDPYRRFLENKLREEYDFTGIPIQIFFR 432 >gi|237654043|ref|YP_002890357.1| GTP-binding protein EngA [Thauera sp. MZ1T] gi|237625290|gb|ACR01980.1| small GTP-binding protein [Thauera sp. MZ1T] Length = 442 Score = 258 bits (659), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 154/470 (32%), Positives = 234/470 (49%), Gaps = 29/470 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M TI +VG PNVGKSTLFNRL + + A+V + PG+TRDR YG + + +VDTAG Sbjct: 1 MKPTIVLVGRPNVGKSTLFNRLTRTRDALVADQPGLTRDRHYGIGRVGDRDYLVVDTAGF 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 I +M Q E AI EA ++LFL+D +AG TP+D I + LR+ P+ +V NK Sbjct: 61 DPVAKDGIMHEMARQAEQAIAEADVLLFLVDGRAGRTPHDENIAARLRRAGRPVHVVVNK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + + ++L + + +SA H G +L ++ F E Sbjct: 121 AEGIDRAMVAADFHALGLGDPLPVSAAHGDGVKQLVELVLAPFPADD--------EKEHS 172 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 ++E PK +A+VGRPNVGKSTL+N LLG R++ G TRD Sbjct: 173 DDEGPK-------------------VAIVGRPNVGKSTLVNTLLGEERVIAFDMPGTTRD 213 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 ++SI + + DTAG+R+ ++ E++E+ +V K++Q+V+ C +++LDA Sbjct: 214 AISIPFERGGKRYTLIDTAGLRRRGKVFEAVEKFSVIKTLQAVQECNVVVLVLDAAQDIS 273 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 QD I G A+V+A+NKWD V D L+ + L + + IS Sbjct: 274 DQDAHIAGFALEAGRALVVAINKWDAVDDYRR--DRLKADIARKLAFLSFARFHQISALK 331 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 EG+ L+ SV + T L LQ+ + PP +++Y Q +P Sbjct: 332 AEGIAGLLKSVDAAYAAATANLATPRLTRALQQAVARQAPPRHGLARPKMRYAHQGGMNP 391 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 P +I + IP+SY RYL F L G P+R+ F+++ NPY + Sbjct: 392 PVIVIHGNALDDIPQSYVRYLERCFMDAFDLKGTPLRIQFRTTHNPYATR 441 >gi|194290002|ref|YP_002005909.1| gtp-binding protein enga [Cupriavidus taiwanensis LMG 19424] gi|238692737|sp|B3R1J8|DER_CUPTR RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|193223837|emb|CAQ69846.1| Ribosome-Associated GTP-binding protein protein [Cupriavidus taiwanensis LMG 19424] Length = 447 Score = 258 bits (659), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 154/469 (32%), Positives = 238/469 (50%), Gaps = 37/469 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTLFNR+ + + A+V + PG+TRDR YG+ I F +DT G Sbjct: 5 IALVGRPNVGKSTLFNRMTRSRDALVADLPGLTRDRHYGEGRIGERPFIAIDTGGFEPVV 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I +M QT+ A+ EA +++F++D + G+ P D AI +LRK I++ NK + Sbjct: 65 KEGIVAEMAKQTKQAVVEADVVIFIVDGRLGLAPQDRAIADYLRKTGRRIMLAVNKAEGM 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + Y L + ISA H G EL ++ Q+ P Sbjct: 125 KYTSVAADFYELGMGDPYAISAAHGDGVRELVDEAIELAVQERPEL-------------- 170 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 E + EGK ++IA+VGRPNVGKSTL+N L+G R++ G TRD++ + Sbjct: 171 -AEEASDEGKG--------VKIAIVGRPNVGKSTLVNTLIGEERVIAFDMPGTTRDAIYV 221 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + P + DTAG+R+ ++ E++E+ +V K++QS+ I+LLDA QD Sbjct: 222 EFERGGKPYTLIDTAGLRRRGKVFEAIEKFSVVKTLQSIADANVVILLLDAQQDISDQDA 281 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSD------KLNLLQDLRTKAIKNLPQIGDIYINTISG 358 I + +G A+V+ +NKWD + K +L + L+ + N + +S Sbjct: 282 HIAGFIVESGRALVVGVNKWDGLDGHTRDRIKHDLERKLQFLSFANF--------HFVSA 333 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 R G+ LM SV + ++ T L LQ+ P + +L+Y Q S Sbjct: 334 RERTGIGALMRSVDDAYAAAMVKLPTPQLTRVLQEAVEFQQPKRVGASRPKLRYAHQGGS 393 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 +PP +I + + E+Y+RYL NR R F L G P+R+ F+++KNPY Sbjct: 394 NPPIIVIHGNALSGVAETYRRYLENRFRAAFKLKGTPLRIEFRTNKNPY 442 >gi|261856783|ref|YP_003264066.1| ribosome-associated GTPase EngA [Halothiobacillus neapolitanus c2] gi|261837252|gb|ACX97019.1| ribosome-associated GTPase EngA [Halothiobacillus neapolitanus c2] Length = 567 Score = 258 bits (659), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 161/474 (33%), Positives = 245/474 (51%), Gaps = 34/474 (7%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M IA+VG PNVGKSTLFN++ + + A+V ++ G+TRDR YG A G F ++DT G+ Sbjct: 1 MKPVIALVGRPNVGKSTLFNQMTRSRAALVADYAGLTRDRQYGSAEHEGRDFIVIDTGGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 G+ I M DQ AI EA ++F++D++AG+T D I LR+ + PI +V NK Sbjct: 61 T-GERGGIEALMQDQAWAAIEEADCVVFMVDARAGLTVADQEIAEKLRRSSKPIQLVVNK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D E L E V +A H G S L + K L +++ Sbjct: 120 VDGVDESLVQAEFARLGLGEPVFTTASHGRGISTLWDAVLVRLADK-----LAVMDEEPE 174 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 +E K +R+A++GRPNVGKSTL NRLLG +R+L Q G TRD Sbjct: 175 YDE------------------KTIRVALIGRPNVGKSTLTNRLLGEDRVLAFDQPGTTRD 216 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ I + + DTAG+R+ +R+ E +E+ ++ K++Q++ I++ DA Sbjct: 217 SIYIPFEQNGKAYTLIDTAGVRRRARVNEMIEKFSIVKTLQAIEAANVVILVCDAHEGIS 276 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSD----KLNLLQDLRTKAIKNLPQIGDIYINTI 356 +QD ++ + + G A+V+A+NKWD ++D ++ DLR L I ++ I Sbjct: 277 EQDQHLLGFIHDRGRALVIAINKWDNLTDYARAEVKRQIDLR------LDFINYAEMHFI 330 Query: 357 SGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQI 416 S G G+ L SV + I+T+ L L+ + PP I R +L+Y Q Sbjct: 331 SALHGTGVGHLFESVDKAYLAAMRDISTNVLTRSLEAAVFAHQPPLIHGRRIKLRYAHQG 390 Query: 417 QSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 S+PP +I +++P +Y RYL R F L G PIR+ F++ NPY K Sbjct: 391 GSNPPIIVIHGKQTDRLPGNYSRYLEGWFRKEFQLMGTPIRLEFRTDSNPYEGK 444 >gi|226312035|ref|YP_002771929.1| GTP-binding protein EngA [Brevibacillus brevis NBRC 100599] gi|254783139|sp|C0ZCB6|DER_BREBN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|226094983|dbj|BAH43425.1| GTP-binding protein EngA [Brevibacillus brevis NBRC 100599] Length = 437 Score = 258 bits (659), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 137/454 (30%), Positives = 242/454 (53%), Gaps = 28/454 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST+FNRL+ +++A+V + PG+TRDRLYG+ F+++DT GI G+ Sbjct: 6 VAIVGRPNVGKSTIFNRLIGERVAIVEDMPGVTRDRLYGKGEWLTHTFHVIDTGGIEFGE 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I QM Q ELAI+EA +I+ + DS+ G+T D ++ L + P+++ NK D Sbjct: 66 TDEILTQMRYQAELAIDEADVIIMIADSRTGVTDADVELSRMLNRTGKPVVLAVNKADNP 125 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + Y+ YSL E +S H LG ++ + + F P E ++E Sbjct: 126 EMRADIYDFYSLGLGEPFPVSGSHGLGLGDMLEEVCQHF-------PAE-------DDEE 171 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 ++++ +R++++GRPNVGKS+L N +LG R++ +G TRD++ Sbjct: 172 KRDDV--------------IRVSIIGRPNVGKSSLTNAILGEERVIVSEVAGTTRDAIDT 217 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + + DTAGMRK ++ E+ E+ +V ++M+S+ + +V+++ +QD Sbjct: 218 PFERDDQSYVLVDTAGMRKRGKVYETTEKYSVMRAMRSIEDSDVVLVVINGEEGIIEQDK 277 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 +I G V++ +NKWD + +Q + + I +S ++ + + Sbjct: 278 KIAGYAHEAGRGVIIIVNKWDAIEKDDKTMQRFTELIREEFKYLDYAPILYVSAKSKQRV 337 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 ++ V E+ + RI T+ LN + ++ PPP+ + ++ Y TQ PP+F+ Sbjct: 338 HTILPKVNEVAQAHSMRIPTAVLNDLVTDATIRTPPPSDRGKRLKINYATQATVKPPTFI 397 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 +F P + SY+RY+ N++R F G P+R+ Sbjct: 398 LFVNDPELMHFSYERYIENKIREAFVFEGTPVRI 431 >gi|323340745|ref|ZP_08080997.1| ribosome-associated GTPase EngA [Lactobacillus ruminis ATCC 25644] gi|323091868|gb|EFZ34488.1| ribosome-associated GTPase EngA [Lactobacillus ruminis ATCC 25644] Length = 436 Score = 258 bits (659), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 142/461 (30%), Positives = 247/461 (53%), Gaps = 31/461 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST+FNR+ +++++V + PG+TRDR+Y ++ G FN++DT GI G Sbjct: 6 VAIVGRPNVGKSTVFNRIAGERISIVEDTPGVTRDRIYARSEWMGQAFNLIDTGGIDIGD 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + Q+ +Q E+AI+EA +I+F+ K G+T D + L K + P+I+ NK+D Sbjct: 66 EPFVT-QITEQAEIAIDEADVIVFVTSVKEGVTDADEKVARILYKTDKPVILAVNKVDNP 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + Y+ YSL F + V IS H +GT +L +I K F Sbjct: 125 EVRSEIYDFYSLGFGDPVPISGTHGIGTGDLLDLIVKNFP-------------------- 164 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 E++T E I ++ + +GRPNVGKS+L+N +LG NR++ + G TRD++ Sbjct: 165 --EDVTEE-------IDDSIKFSFIGRPNVGKSSLVNAILGENRVIVSNIEGTTRDAIDT 215 Query: 245 SWNWKNHPI-EIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + ++ + + DTAG+RK ++ E+ E+ +V ++MQ++ + V+L+A +QD Sbjct: 216 KFTTEDGSVYTMIDTAGIRKKGKVYENTEKYSVLRAMQAIDRSDVVCVVLNAEEGIREQD 275 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 + + G +V+ +NKWD + +++ + + I +S +T + Sbjct: 276 KHVAGYAHDAGRGIVIVVNKWDTLKKDSYTMKEFESHIRNEFQYLSYAPIVFVSAKTHQR 335 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 L++L + +++ R++++ LN + NP PT + R+ Y TQ+ PP+F Sbjct: 336 LNELPKLIRRVDENHSKRVSSAVLNDVIMDAIAHNPTPTDNGKRLRIYYATQVAVKPPTF 395 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 +IF P + SY+R+L N+LR F G P+ + + K Sbjct: 396 VIFVNDPELMHFSYERFLENQLRAAFDFEGTPLHLIERRRK 436 >gi|189502515|ref|YP_001958232.1| GTP-binding protein EngA [Candidatus Amoebophilus asiaticus 5a2] gi|238692314|sp|B3ETF1|DER_AMOA5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|189497956|gb|ACE06503.1| hypothetical protein Aasi_1169 [Candidatus Amoebophilus asiaticus 5a2] Length = 433 Score = 258 bits (659), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 141/461 (30%), Positives = 243/461 (52%), Gaps = 30/461 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +AIVG PNVGKSTLFNRLV+++ A++ + G TRDR YG A NG F +VDT G Sbjct: 1 MANIVAIVGRPNVGKSTLFNRLVEERKAIMASESGTTRDRHYGYATWNGKNFTVVDTGGY 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 G + K + +Q ++AI EA ++LF++D + GIT D + LR + P+++V+NK Sbjct: 61 VQGSSDIFEKSICEQAKIAIEEASVVLFMVDCQVGITAMDKEVAHILRAADKPVLLVANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 D +E ++L ISA GT +L Sbjct: 121 ADNVDTALMAHEFHALGLGNPYPISAASGTGTGDL------------------------- 155 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 + +T + +++ + +IA++GRPNVGKS+L+N LLG R + +G TRD Sbjct: 156 -----LDQVTVYCQDTIEQETDIPKIAILGRPNVGKSSLLNALLGEERSIVTPIAGTTRD 210 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 ++ ++N + DTAG+RK S++ E +E + +++++++ + I+++DAT+ E Sbjct: 211 AIDTTYNLYGKNFILTDTAGIRKKSKVKEDIEFYSTLRALKALQDADVCIIMIDATLGLE 270 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 QD+ ++ + ++L +NKWD++ + + + L I I IS Sbjct: 271 GQDVNLISLAYKYKKGILLLVNKWDLIKKDNHTNAQFKKNIEQELGAHSHIPILFISALH 330 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 + + + LE+ +I+T+ LN + + PPP + +Y ++KY+ ++ + Sbjct: 331 KQRIFQAIEKALEVYTNKTQKISTAALNQTMLPVIERYPPPAVKGKYIKIKYVARLPTHT 390 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 P FC P + YKRYL N+LR NF+L+G+P+++ F+ Sbjct: 391 PVIAFFCNLPQYVQPPYKRYLENQLRKNFNLAGVPVQLVFR 431 >gi|254248074|ref|ZP_04941395.1| Small GTP-binding protein domain [Burkholderia cenocepacia PC184] gi|124872850|gb|EAY64566.1| Small GTP-binding protein domain [Burkholderia cenocepacia PC184] Length = 445 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 162/469 (34%), Positives = 247/469 (52%), Gaps = 32/469 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+ + + IVDT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGERPYLIVDTGGFEPVA 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I +M QT A+ EA +++F++D + G+ P D +I +LRK PI +V NK + Sbjct: 65 KDGILHEMARQTRQAVEEADVVVFIVDGRNGLAPQDKSIADYLRKTGRPIFLVVNKAEGM 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + Y L + ISA H G +++ I + + Y P E +E+ Sbjct: 125 KYTAVATDFYELGLGDPRAISAAHGDGVTDM---INEALEVAYAGQPEEA------DEDD 175 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P S+ ++IA+VGRPNVGKSTL+N L+G +R++ G TRDS+ + Sbjct: 176 P---------------SRGIKIAIVGRPNVGKSTLVNALIGEDRVIAFDMPGTTRDSIYV 220 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + DTAG+R+ ++ E++E+ +V K++QS+ I+LLDA QD Sbjct: 221 DFERNGKKYTLIDTAGLRRRGKVFEAIEKFSVVKTLQSISDANVVILLLDAQQDISDQDA 280 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSD--KLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 I V G A+V+ +NKWD + D + DL T+ +K L +I+ + +TG Sbjct: 281 HIAGFVVEQGRALVIGVNKWDGLDDHARDRAKADL-TRKLKFLDFAKSHFISA-AKKTGI 338 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLN-SWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 G LM SV + ++ T L + ++ + Q P R +L+Y Q +PP Sbjct: 339 GA--LMRSVDDAYAAAMAKLPTPKLTRALIEAVEFQQPRRRGPVR-PKLRYAHQGGQNPP 395 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +I + + E+YKRYL NR R FSL+G P+R+ F+SS NPY K Sbjct: 396 IIVIHGNALDAVTETYKRYLENRFRETFSLTGTPLRIEFRSSNNPYADK 444 >gi|84624044|ref|YP_451416.1| GTP-binding protein EngA [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|161898989|ref|YP_201168.2| GTP-binding protein EngA [Xanthomonas oryzae pv. oryzae KACC10331] gi|188576711|ref|YP_001913640.1| GTP-binding protein EngA [Xanthomonas oryzae pv. oryzae PXO99A] gi|188576902|ref|YP_001913831.1| GTP-binding protein EngA [Xanthomonas oryzae pv. oryzae PXO99A] gi|123752759|sp|Q2P2T5|DER_XANOM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|84367984|dbj|BAE69142.1| GTP-binding protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188521163|gb|ACD59108.1| GTP-binding protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|188521354|gb|ACD59299.1| GTP-binding protein [Xanthomonas oryzae pv. oryzae PXO99A] Length = 465 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 158/473 (33%), Positives = 249/473 (52%), Gaps = 33/473 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVI-FNIVDTAG 59 M+ +A+VG PNVGKST+FN L + + A+V + PG+TRDR YG ++ F +VDT G Sbjct: 1 MLPLVALVGRPNVGKSTIFNALTRTRDALVHDQPGVTRDRNYGVCRLDEQQPFIVVDTGG 60 Query: 60 IADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 IA G +A Q A EA L+LF++D + G + D I ++LRK P ++V N Sbjct: 61 IA-GDEDGLAGATARQARAAAGEADLVLFVVDGREGESSLDDEILAWLRKLARPTVLVIN 119 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNK 179 K+D + E F ++V +SA H G EL LE + Sbjct: 120 KIDGTDEETVRSEFARYGFSDVVALSAAHRQGIDEL----------------LEEV---- 159 Query: 180 RNEESPKENITSEGKSS-VKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 + EG + N +RIA VGRPNVGKSTL+NRLLG R++ G T Sbjct: 160 ------GARLPEEGSGELLDNDPARVRIAFVGRPNVGKSTLVNRLLGEERMIASEVPGTT 213 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RDS+++ + DTAG+R+ ++ E++E+ + K++Q++ C+ +++LDAT Sbjct: 214 RDSIAVDLERDGRQYRLIDTAGLRRRGKVEEAVEKFSAFKTLQAIERCQVAVLMLDATEG 273 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSD-KLNLLQDLRTKAIKNLPQIGDIYINTIS 357 QD I+ ++ + G A+V+A+NKWD SD + +DL ++ + + + I+ + Sbjct: 274 VTDQDATILGAILDAGRALVVAINKWDGQSDYQRAQAEDLLSRKLGFVSWAEAVRISALH 333 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 G G+ +L ++ + +TS +N L+ NPPP+I ++L+Y+ Sbjct: 334 ---GSGMRELFQAIHRAHASATHEFSTSEVNQALEIAYETNPPPSIRGHVSKLRYVHPGG 390 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 ++PP+F++ T +PESYKRYL N R F L G P+ F+ NPY K Sbjct: 391 ANPPTFIVHGTRLKVLPESYKRYLENFFRKRFKLVGTPVCFIFREGANPYEGK 443 >gi|172060768|ref|YP_001808420.1| GTP-binding protein EngA [Burkholderia ambifaria MC40-6] gi|238689149|sp|B1YR40|DER_BURA4 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|171993285|gb|ACB64204.1| small GTP-binding protein [Burkholderia ambifaria MC40-6] Length = 445 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 162/469 (34%), Positives = 246/469 (52%), Gaps = 32/469 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+ + + +VDT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGERPYLVVDTGGFEPVA 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I QM QT A+ EA +++F++D + G+ P D +I +LRK PI +V NK + Sbjct: 65 KDGILHQMARQTRQAVEEADVVVFIVDGRNGLAPQDKSIADYLRKTGRPIFLVVNKAEGM 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + Y L + ISA H G +++ I + + Y P E +++ Sbjct: 125 KYTAVATDFYELGLGDPRAISAAHGDGVTDM---INEALEVAYAGQPEEA------DDDD 175 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P S+ ++IA+VGRPNVGKSTL+N L+G +R++ G TRDS+ + Sbjct: 176 P---------------SRGIKIAIVGRPNVGKSTLVNALIGEDRVIAFDMPGTTRDSIYV 220 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + DTAG+R+ ++ E++E+ +V K++QS+ I+LLDA QD Sbjct: 221 DFERNGKKYTLIDTAGLRRRGKVFEAIEKFSVVKTLQSISDANVVILLLDAQQDISDQDA 280 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSD--KLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 I V G A+V+ +NKWD + D + DL T+ +K L YI+ + +TG Sbjct: 281 HIAGFVVEQGRALVIGVNKWDGLDDHARDRAKADL-TRKLKFLDFAKSHYISA-AKKTGI 338 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWL-QKTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 G LM SV + ++ T L L + + Q P R +L+Y Q +PP Sbjct: 339 GA--LMRSVDDAYAAAMAKLPTPKLTRALIEAVEFQQPRRRGPVR-PKLRYAHQGGQNPP 395 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +I + + ++YKRYL NR R FSL+G P+R+ F+SS NPY K Sbjct: 396 LIVIHGNALDAVTDTYKRYLENRFRETFSLTGTPLRIEFRSSNNPYADK 444 >gi|242242754|ref|ZP_04797199.1| GTP-binding protein EngA [Staphylococcus epidermidis W23144] gi|242233890|gb|EES36202.1| GTP-binding protein EngA [Staphylococcus epidermidis W23144] Length = 436 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 147/456 (32%), Positives = 241/456 (52%), Gaps = 31/456 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST+FNR+V +++++V + PG+TRDR+Y FNI+DT GI G Sbjct: 6 VAIVGKPNVGKSTIFNRVVGERVSIVEDTPGVTRDRIYSSGEWLTHEFNIIDTGGIEIG- 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + Q+ Q E+AI EA +I+F+++ + G+T D + L K P+++ NK+D Sbjct: 65 DAPFQTQIRAQAEIAIEEADVIIFMVNVREGLTQSDEMVAQMLYKSKKPVVLAVNKVDNL 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + Y+ YSL F + IS H LG +L + +EN + E Sbjct: 125 EMRNDIYDFYSLGFGDPYPISGSHGLGLGDLLDAV---------------VENFNKESED 169 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P + T +R++++GRPNVGKS+L+N +LG R++ + +G TRD++ Sbjct: 170 PYDEDT-------------IRLSIIGRPNVGKSSLVNAILGEERVIVSNVAGTTRDAIDT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 +++ + DTAGMRK ++ ES E+ +V ++++++ E +V++DA +QD Sbjct: 217 EYSYDGQDYVLIDTAGMRKKGKVYESTEKYSVLRALKAIERSEVVLVVIDAEQGIIEQDK 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGD-IYINTISGRTGEG 363 R+ G A+V+ +NKWD V ++ T I+N Q D I +S + G Sbjct: 277 RVAGYAHEEGKAIVIVVNKWDTVEKDSKTMKKF-TDDIRNEFQFLDYAQIAFVSAKEGLR 335 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 L L + + ++ K R+ +S LN + NP PT R + Y TQ+ PP+F Sbjct: 336 LKTLFPYINQASENHKKRVQSSTLNEVVTDAISMNPTPTDKGRRLNVFYTTQVAIEPPTF 395 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 ++F + SY+RYL N++R F G PI + Sbjct: 396 VVFVNDVELMHFSYRRYLENQIRNAFGFEGTPIHII 431 >gi|166712110|ref|ZP_02243317.1| GTP-binding protein EngA [Xanthomonas oryzae pv. oryzicola BLS256] Length = 465 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 158/473 (33%), Positives = 248/473 (52%), Gaps = 33/473 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVI-FNIVDTAG 59 M+ +A+VG PNVGKST+FN L + + A+V + PG+TRDR YG ++ F +VDT G Sbjct: 1 MLPLVALVGRPNVGKSTIFNALTRTRDALVHDQPGVTRDRHYGVCRLDEQQPFIVVDTGG 60 Query: 60 IADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 IA G +A Q A EA L+LF++D + G + D I ++LRK ++V N Sbjct: 61 IA-GDEDGLAGATARQARAAAGEADLVLFVVDGREGASSLDDEILAWLRKLARQTVLVIN 119 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNK 179 K+D + E F +V +SA H G EL LE + Sbjct: 120 KIDGTDEETVRSEFARYGFCNVVALSAAHRQGIDEL----------------LEEV---- 159 Query: 180 RNEESPKENITSEGKSS-VKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 + EG + N +RIA VGRPNVGKSTL+NRLLG R++ G T Sbjct: 160 ------GARLPEEGSGELLDNDPARVRIAFVGRPNVGKSTLVNRLLGEERMIASEVPGTT 213 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RDS+++ + DTAG+R+ ++ E++E+ + K++Q++ C+ +++LDAT Sbjct: 214 RDSIAVDLERDGRQYRLIDTAGLRRRGKVEEAVEKFSAFKTLQAIEQCQVAVLMLDATEG 273 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSD-KLNLLQDLRTKAIKNLPQIGDIYINTIS 357 QD I+ ++ + G A+V+A+NKWD SD + +DL ++ + + + I+ + Sbjct: 274 VTDQDATILGAILDAGRALVVAINKWDGQSDYQRAQAEDLLSRKLGFVSWAEAVRISALH 333 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 G G+ +L ++ + +TS +N L+ NPPP+I ++L+Y+ Sbjct: 334 ---GSGMRELFQAIHRAHASATHEFSTSEVNQALEIAYETNPPPSIRGHVSKLRYVHPGG 390 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 ++PP+F++ T +PESYKRYL N R F L G P+R F+ NPY K Sbjct: 391 ANPPTFIVHGTRLKVLPESYKRYLENFFRKRFKLVGTPVRFIFREGANPYEGK 443 >gi|53802988|ref|YP_115285.1| GTPase family protein [Methylococcus capsulatus str. Bath] gi|81823578|sp|Q603B5|DER_METCA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|53756749|gb|AAU91040.1| GTPase family protein [Methylococcus capsulatus str. Bath] Length = 463 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 155/467 (33%), Positives = 240/467 (51%), Gaps = 29/467 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A++G NVGKSTLFN L + + A+V + PG+TRDR YG+ + +VDT GI Sbjct: 1 MLPVVALIGRTNVGKSTLFNYLTRTRDALVADFPGLTRDRQYGRVQRGERDYFVVDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + I Q Q + ++EA +ILFL+D AG+T D I LR+ N P+++V+NK Sbjct: 61 IEAAE-GIDDQAMKQVDHVLDEADVILFLVDVHAGMTAGDELIADRLRRINKPVLLVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D A E ++ E + ISA H G L LE +E Sbjct: 120 IDGTQALIAGAEFHAFGLGEPLLISAAHGTGVHAL----------------LERVE---- 159 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 + G++ +RIAVVGRPNVGKSTL+NR+LG R++ Q G TRD Sbjct: 160 ------ALLPESGETGETEAEGGIRIAVVGRPNVGKSTLVNRILGEERVVVYDQPGTTRD 213 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ I + + + DTAG+R+ +R+ E +E+ +V KS Q++ I L+DA+ Sbjct: 214 SIYIPFERRGERYTLIDTAGIRRRARVNEGVEKFSVIKSFQAIEKAHVVIYLVDASEGLT 273 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 QD ++ V G +++ NKWD + + + ++ + LP + IS Sbjct: 274 DQDANLLGMVLEIGRGLLIGFNKWDGLEPEQR--EKVKRQIDVKLPFLEFAKKYFISALH 331 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G G+ LM +V I + ++ S L LQ +PPP + R +LKY Q +P Sbjct: 332 GTGVGVLMDAVKPIYQSAMLDLSASRLTQVLQDCLTAHPPPLVRGRRIKLKYAHQGGHNP 391 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 P +I +P +Y+RYL N R F L G+P+++ F+S++NP+ Sbjct: 392 PVVVIHGNQTEDLPAAYRRYLGNEFRNAFKLQGVPLKLVFKSAENPF 438 >gi|150003043|ref|YP_001297787.1| GTP-binding protein EngA [Bacteroides vulgatus ATCC 8482] gi|254883681|ref|ZP_05256391.1| GTP-binding protein engA [Bacteroides sp. 4_3_47FAA] gi|294775667|ref|ZP_06741175.1| ribosome-associated GTPase EngA [Bacteroides vulgatus PC510] gi|319642181|ref|ZP_07996841.1| GTP-binding protein engA [Bacteroides sp. 3_1_40A] gi|166224306|sp|A6KXK1|DER_BACV8 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|149931467|gb|ABR38165.1| putative phosphoglycerate dehydrogenase [Bacteroides vulgatus ATCC 8482] gi|254836474|gb|EET16783.1| GTP-binding protein engA [Bacteroides sp. 4_3_47FAA] gi|294450511|gb|EFG19003.1| ribosome-associated GTPase EngA [Bacteroides vulgatus PC510] gi|317386167|gb|EFV67086.1| GTP-binding protein engA [Bacteroides sp. 3_1_40A] Length = 437 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 161/456 (35%), Positives = 243/456 (53%), Gaps = 30/456 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNRL K + A+V G TRDR YG++ G F++VDT G Sbjct: 5 VAIVGRPNVGKSTLFNRLTKTRQAIVNEQAGTTRDRQYGKSEWVGHEFSVVDTGGWVVNS 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +++ Q LAI+EA +ILF++D G+T D A+ S LR+ P+I+V+NK D Sbjct: 65 DDVFEEEIRKQVSLAIDEADVILFVVDVVNGVTDLDMAVASILRRTKKPVIMVANKTDNN 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 Q N E Y L + ISA GT EL ++ F +K EE Sbjct: 125 ELQYNAAEFYKLGLGDPYCISALSGSGTGELLDLVVGKF--------------SKEGEEL 170 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 E+I R AVVGRPN GKS++IN +G +R + +G TRDS+ Sbjct: 171 LDEDIP--------------RFAVVGRPNAGKSSIINAFIGEDRNIVTEIAGTTRDSIYT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + DTAG+RK ++++E LE +V +S++S+ + I++LDAT E QDL Sbjct: 217 RYEKFGFDFYLVDTAGIRKKNKVSEDLEYYSVIRSIRSIENSDVCILMLDATRGIEGQDL 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKN-LPQIGDIYINTISGRTGEG 363 I + +V+ +NKWD+V +K + +AI++ L D I S T + Sbjct: 277 NIFSLIQRNQKGLVVVVNKWDLVENKNAKVMKTYEEAIRSRLAPFVDFPIIFASALTKQR 336 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP-PS 422 + ++ + E+ + TRI T+ LN + PPP+ +Y ++KY TQ+ ++ PS Sbjct: 337 IFKVLETAKEVYQARTTRIPTARLNEEMLPLIEAYPPPSNKGKYIKIKYCTQLPNTQVPS 396 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 F+ F P + E YKR+L N++R ++LSG PI + Sbjct: 397 FVFFANLPQYVKEPYKRFLENKIREKWNLSGTPINI 432 >gi|325294541|ref|YP_004281055.1| GTP-binding protein engA [Desulfurobacterium thermolithotrophum DSM 11699] gi|325064989|gb|ADY72996.1| GTP-binding protein engA [Desulfurobacterium thermolithotrophum DSM 11699] Length = 478 Score = 257 bits (657), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 150/479 (31%), Positives = 259/479 (54%), Gaps = 29/479 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 I+IVG PNVGKS+LFNRL++KK+A++ + PG+TRDR+ +A I+ +VDT G+ D Sbjct: 6 VISIVGRPNVGKSSLFNRLLEKKVAIIDDTPGVTRDRIVQEADIDDHKVILVDTGGV-DT 64 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 AK+ +Q + A+ EA +I+F++D K GITP D + LRK PII+ NK+D Sbjct: 65 SGEGFAKETTEQAKRAMEEADIIVFVVDGKEGITPLDEEVAKILRKWKKPIIVAVNKIDE 124 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHP------------ 171 + Y+ Y L F E++ IS H +G L I ++ Q+ Sbjct: 125 PYMEDLIYDAYRLGFPEVIPISTIHKIGIPTLKERILELLPQELRESAKETFEKEEKRKK 184 Query: 172 -LEMIENNKRNEESPKENITSEGKSSV--KNISK-PLRIAVVGRPNVGKSTLINRLLGYN 227 ++I R E + GK + +++ K P+++A+VGRPN+GKSTL+N L+G Sbjct: 185 AEKLISGESREELEELIDTLEGGKDYIIEEDVEKEPIKVAIVGRPNMGKSTLLNALVGEE 244 Query: 228 RLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCE 287 R + G TRD++ + DTAG+R+ +I + +E + +++ ++ + Sbjct: 245 RAIVSDIPGTTRDAIDTYAKIGDDEFIFIDTAGIRRRGKIKD-IEYYSYLRALDAIDRAD 303 Query: 288 TTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVS-----DKLNLLQDLRTKAI 342 ++L+DA +D +I + +++A+NK D + ++L+ DL I Sbjct: 304 VVVLLVDAEEGPTDRDTKISGIALDKFKPIIIAVNKIDKLQNQKEWERLHRELDLNFDFI 363 Query: 343 KNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPT 402 P++ IS + +GL++L+ + ++ K + ++ T N L++ + PP Sbjct: 364 PYAPRV------FISAKEKKGLEELIKQIKDVYKQYTKKVRTGEFNRALKELMEIHQPPV 417 Query: 403 IFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 N+ ++ Y TQ+++ PP+FL+F +P IP+S++R+L NRLR F + IPIR+ F+ Sbjct: 418 YKNKVVKIYYGTQVKTKPPTFLLFSNYPEGIPKSFRRFLENRLREKFGFNKIPIRIVFK 476 >gi|16803976|ref|NP_465461.1| GTP-binding protein EngA [Listeria monocytogenes EGD-e] gi|46908170|ref|YP_014559.1| GTP-binding protein EngA [Listeria monocytogenes serotype 4b str. F2365] gi|217963911|ref|YP_002349589.1| GTP-binding protein EngA [Listeria monocytogenes HCC23] gi|224498613|ref|ZP_03666962.1| GTP-binding protein EngA [Listeria monocytogenes Finland 1988] gi|224501264|ref|ZP_03669571.1| GTP-binding protein EngA [Listeria monocytogenes FSL R2-561] gi|226224541|ref|YP_002758648.1| hypothetical protein Lm4b_01954 [Listeria monocytogenes Clip81459] gi|254825568|ref|ZP_05230569.1| GTPase [Listeria monocytogenes FSL J1-194] gi|254827178|ref|ZP_05231865.1| GTPase [Listeria monocytogenes FSL N3-165] gi|254831462|ref|ZP_05236117.1| GTP-binding protein EngA [Listeria monocytogenes 10403S] gi|254899366|ref|ZP_05259290.1| GTP-binding protein EngA [Listeria monocytogenes J0161] gi|254912495|ref|ZP_05262507.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|254931892|ref|ZP_05265251.1| GTPase [Listeria monocytogenes HPB2262] gi|254936822|ref|ZP_05268519.1| GTPase [Listeria monocytogenes F6900] gi|254993214|ref|ZP_05275404.1| GTP-binding protein EngA [Listeria monocytogenes FSL J2-064] gi|255028956|ref|ZP_05300907.1| GTP-binding protein EngA [Listeria monocytogenes LO28] gi|284802382|ref|YP_003414247.1| GTP-binding protein EngA [Listeria monocytogenes 08-5578] gi|284995524|ref|YP_003417292.1| GTP-binding protein EngA [Listeria monocytogenes 08-5923] gi|290892097|ref|ZP_06555093.1| GTPase [Listeria monocytogenes FSL J2-071] gi|300763753|ref|ZP_07073750.1| GTPase [Listeria monocytogenes FSL N1-017] gi|26006722|sp|Q8Y5W8|DER_LISMO RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|67460310|sp|Q71Y78|DER_LISMF RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|254783158|sp|B8DBY9|DER_LISMH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|259645882|sp|C1KWN7|DER_LISMC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|16411390|emb|CAD00015.1| lmo1937 [Listeria monocytogenes EGD-e] gi|46881440|gb|AAT04736.1| GTPase family protein [Listeria monocytogenes serotype 4b str. F2365] gi|217333181|gb|ACK38975.1| GTP-binding protein EngA [Listeria monocytogenes HCC23] gi|225877003|emb|CAS05712.1| Hypothetical protein of unknown function [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258599561|gb|EEW12886.1| GTPase [Listeria monocytogenes FSL N3-165] gi|258609417|gb|EEW22025.1| GTPase [Listeria monocytogenes F6900] gi|284057944|gb|ADB68885.1| GTP-binding protein EngA [Listeria monocytogenes 08-5578] gi|284060991|gb|ADB71930.1| GTP-binding protein EngA [Listeria monocytogenes 08-5923] gi|290558220|gb|EFD91738.1| GTPase [Listeria monocytogenes FSL J2-071] gi|293583444|gb|EFF95476.1| GTPase [Listeria monocytogenes HPB2262] gi|293590479|gb|EFF98813.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|293594811|gb|EFG02572.1| GTPase [Listeria monocytogenes FSL J1-194] gi|300515489|gb|EFK42539.1| GTPase [Listeria monocytogenes FSL N1-017] gi|307571519|emb|CAR84698.1| GTPase family protein [Listeria monocytogenes L99] gi|313607930|gb|EFR84070.1| ribosome-associated GTPase EngA [Listeria monocytogenes FSL F2-208] gi|328466285|gb|EGF37442.1| GTP-binding protein Der [Listeria monocytogenes 1816] gi|328472780|gb|EGF43629.1| GTP-binding protein Der [Listeria monocytogenes 220] gi|332312377|gb|EGJ25472.1| GTPase Der [Listeria monocytogenes str. Scott A] Length = 436 Score = 257 bits (657), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 144/461 (31%), Positives = 252/461 (54%), Gaps = 31/461 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST+FNR+V +++++V + PG+TRDR+Y A G FNI+DT GI D Sbjct: 6 VAIVGRPNVGKSTIFNRIVGERVSIVEDVPGVTRDRIYNSAEWLGKEFNIIDTGGI-DLS 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +Q+ Q E+AI+EA +I+F+ + + G+T D + L + N PI++ NK+D Sbjct: 65 DEPFLEQIRAQAEIAIDEADVIIFITNGREGVTDADEQVAKILYRSNKPIVLAINKVDNP 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + Y+ YSL F E IS H LG ++ + + +P + EE Sbjct: 125 EMRDQIYDFYSLGFGEPYPISGSHGLGLGDMLDAV----RAHFPK---------EEEEEY 171 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P + + + +++GRPNVGKS+++N LLG +R++ +G TRD++ Sbjct: 172 PDDTV---------------KFSLIGRPNVGKSSILNALLGEDRVIVSDIAGTTRDAIDT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 ++ + + DTAGMRK ++ ES E+ +V ++M+++ + +V+++A +QD Sbjct: 217 TYTFDGQDYVMIDTAGMRKRGKVYESTEKYSVLRAMRAIERSDVVLVVINAEEGIREQDK 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQ-IGDIYINTISGRTGEG 363 RI + G A+++ +NKWD ++ + ++ T+ I+ Q + I +S +T + Sbjct: 277 RIAGYAHDAGRAIIIVVNKWDAINKDEKTI-NVWTEDIREQFQFLSYAPIVFVSAKTKQR 335 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 L++L + +++ R+ +S LN + NP P + ++ Y TQ+ PP+F Sbjct: 336 LNNLFPLINQVSDNHSLRVQSSMLNDVISDAVAMNPSPMDKGKRLKIFYTTQVAVKPPTF 395 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 ++F P + SY+R+L NR+R F G PIR+ + K Sbjct: 396 VVFVNDPELMHFSYERFLENRIREAFPFEGTPIRVIARKRK 436 >gi|325280073|ref|YP_004252615.1| GTP-binding protein engA [Odoribacter splanchnicus DSM 20712] gi|324311882|gb|ADY32435.1| GTP-binding protein engA [Odoribacter splanchnicus DSM 20712] Length = 435 Score = 257 bits (657), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 146/455 (32%), Positives = 245/455 (53%), Gaps = 30/455 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNRLV + A+V G+TRDR YG++ NG F+++DT G Sbjct: 5 VAIVGRPNVGKSTLFNRLVGTRKAIVNEESGVTRDRNYGKSSWNGKDFSVIDTGGYVSNS 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +++N Q LA++EA +ILF++D++ G+T D LR + P+ +V+NK+D Sbjct: 65 DDIFEEEINKQVILALDEADVILFMVDAEIGVTDLDQNFARLLRNIDKPVYLVANKVDNH 124 Query: 125 IAQRNFYEIYSLDFK-EIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + Y L K ++ IS+ GT +L + F++ Sbjct: 125 ERLYEAQDFYRLGIKGDLFCISSVSGSGTGDLLDQVVSHFQE------------------ 166 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 +++++ RI +VGRPNVGKS+ IN L+G R + +G TRD+++ Sbjct: 167 -----------NTIEDTDHLPRITIVGRPNVGKSSTINALIGEERNIVTDIAGTTRDTLN 215 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 +N + + DTAG+RK ++++E +E +V +S++++ + I+L+DAT E QD Sbjct: 216 TRYNRFGYDFLLVDTAGLRKKAKVSEDVEFYSVMRSIRAIEESDVCILLIDATRGMEAQD 275 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 L I + VV+ +NKWD+V L + + + D+ I S T + Sbjct: 276 LNIFHLIERNRKGVVIVVNKWDLVEKDGKTLIEYEKSLREKIAPFKDVDIIFASALTKQR 335 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 L ++ + L++ +I TS LN + + PPP++ +Y ++KYITQ+ + PSF Sbjct: 336 LLKVLEAALQVYANRTQKIKTSELNRIMLEAIENYPPPSLKGKYVKIKYITQLPTHAPSF 395 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 +C P + + YKRYL N++R N+ +G+PI++ Sbjct: 396 AFYCNLPQYVKDPYKRYLENQIRENWKFTGVPIQI 430 >gi|170694783|ref|ZP_02885934.1| small GTP-binding protein [Burkholderia graminis C4D1M] gi|170140414|gb|EDT08591.1| small GTP-binding protein [Burkholderia graminis C4D1M] Length = 445 Score = 257 bits (657), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 160/469 (34%), Positives = 241/469 (51%), Gaps = 32/469 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+ + +VDT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRTGERPYLVVDTGGFEPVA 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I +M QT A+ E+ +++F++D + G+ P D +I +LRK PI +V NK + Sbjct: 65 KDGILHEMARQTRQAVEESDIVVFIVDGRNGLAPQDKSIADYLRKTGRPIFLVVNKAEGM 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + Y L + ISA H G +E+ I + Y P E E+ + Sbjct: 125 KYSTVAADFYELGLGDPRAISAAHGDGVTEM---INEALGVAYAGQPEESDEDKE----- 176 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 ++ ++IA+VGRPNVGKSTLIN L+G R++ G TRDS+ + Sbjct: 177 ----------------ARGVKIAIVGRPNVGKSTLINALVGEERVIAFDMPGTTRDSIYV 220 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + P + DTAG+R+ ++ E++E+ +V K++QS+ I+LLDA +QD Sbjct: 221 DFERQGKPYTLIDTAGLRRRGKVFEAIEKFSVVKTLQSISDANVVILLLDARQDISEQDA 280 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAI--KNLPQIGDIYINTISGRTGE 362 I V G A+V+ +NKWD + + RTKA + L + + IS Sbjct: 281 HIAGFVVEQGRALVVGVNKWDGLDSHVR----ERTKADLERKLKFLDFAKFHFISAAEKT 336 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWL-QKTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 G+ LM SV + +++ T L L + + Q P R +L+Y Q +PP Sbjct: 337 GIGPLMRSVDDAYAAAMSKLPTPKLTRALIEAVEFQQPRRRGPVR-PKLRYAHQGGQNPP 395 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +I + I E+YKRYL NR R F L+G P+R+ F+SS NPY K Sbjct: 396 IIVIHGNALDAITETYKRYLENRFRETFKLTGTPLRIEFRSSTNPYADK 444 >gi|154494318|ref|ZP_02033638.1| hypothetical protein PARMER_03672 [Parabacteroides merdae ATCC 43184] gi|154085762|gb|EDN84807.1| hypothetical protein PARMER_03672 [Parabacteroides merdae ATCC 43184] Length = 437 Score = 257 bits (657), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 157/456 (34%), Positives = 243/456 (53%), Gaps = 30/456 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNRL + + A+V G TRDR YG+A G F+++DT G Sbjct: 5 VAIVGRPNVGKSTLFNRLTQTRQAIVNEEAGTTRDRQYGKAEWTGKEFSLIDTGGWVINS 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +++N Q ++A+ EA +ILF++D G+T D+ + + LR+ P+I+V+NK D Sbjct: 65 DDVFEEEINKQVKVALEEADVILFVVDVLNGVTDLDNEVAAILRRAKKPVIVVANKADNF 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + E YS + ISA + T +L I P+ EM+E EE Sbjct: 125 ELHPSSAEFYSFGLGDPFCISAINGSCTGDLLDKIVATL----PDDKQEMLE-----EEL 175 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P RIA++GRPN GKS+LIN +G +R + +G TRDS+ Sbjct: 176 P-------------------RIAIIGRPNAGKSSLINAFIGEDRHIVTDIAGTTRDSIYT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 +N + DTAG+RK ++ E LE +V +S++++ + +++LDAT E QDL Sbjct: 217 KYNKFGLNFYLVDTAGIRKKGKVNEDLEYYSVIRSIRAIENSDVCVLMLDATRGIESQDL 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKN-LPQIGDIYINTISGRTGEG 363 I V +V+ +NKWD+V DK + D AI+ L D I IS T + Sbjct: 277 NIFSLVQKNKKGLVVCVNKWDLVEDKSQKVIDTFMSAIRERLAPFTDFPILFISALTKQR 336 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP-PS 422 + ++ + ++ + + R+ T+ LN + PPP +Y ++KYITQ+ + PS Sbjct: 337 ILKVLETAKDVYENRQRRVPTAKLNEIMLPIIENYPPPAWKGKYIKIKYITQLPAGQVPS 396 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 F+ FC P I E YKR+L N++R N++ +G PI + Sbjct: 397 FVFFCNLPQWIKEPYKRFLENKIRENWNFTGTPINV 432 >gi|229496957|ref|ZP_04390662.1| ribosome-associated GTPase EngA [Porphyromonas endodontalis ATCC 35406] gi|229316059|gb|EEN81987.1| ribosome-associated GTPase EngA [Porphyromonas endodontalis ATCC 35406] Length = 436 Score = 257 bits (657), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 156/455 (34%), Positives = 236/455 (51%), Gaps = 29/455 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNRLV + A+V G TRDR YG G F+IVDT G G Sbjct: 5 VAIVGRPNVGKSTLFNRLVGSRQAIVTEISGTTRDRQYGHTNWTGHEFSIVDTGGWVSGS 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 ++N Q ++AI EA +ILF++D AG+T D + LR+ PI++V+NK DT Sbjct: 65 EDVFESEINKQVQIAIEEADVILFVVDVMAGMTDLDREVAGLLRRAKKPILLVANKADTF 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 E Y+L + ISA + GT +L I +++ + +E Sbjct: 125 EIGYQSAEFYALGLGDPYAISAINGSGTGDLLDAIVNSLPEQH---------ERETEKEL 175 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P R AVVGRPN GKS+LIN +G R + + +G TRDS+ Sbjct: 176 P-------------------RFAVVGRPNAGKSSLINAFIGEERNIVTNVAGTTRDSIYT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 +N + DTAG+RK ++ E LE +V +S++++ + I ++D T E QD+ Sbjct: 217 EYNKFGFSFYLVDTAGIRKRGKVQEDLEYYSVIRSIRAIENSDICIAMIDVTRGIESQDV 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKN-LPQIGDIYINTISGRTGEG 363 I+ V +V+ +NKWD+V +K N + +AI++ L D I IS T + Sbjct: 277 NILSLVMRNSKGLVVCVNKWDLVENKTNEAIRVFEEAIRSRLAPFSDFPILFISALTKQR 336 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 + ++ + + RI T LN L + PPP+ +Y ++KY+TQ+ ++ PSF Sbjct: 337 IFKVLEVANAVYQRRSKRIPTHELNEVLLPIIEETPPPSWKGKYIKIKYVTQLPTAVPSF 396 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 + P + + YKR+L N++R N+ SGIPI + Sbjct: 397 AFYANLPQWVKDPYKRFLENQIRKNWDFSGIPINI 431 >gi|107029013|ref|YP_626108.1| GTP-binding protein EngA [Burkholderia cenocepacia AU 1054] gi|116689829|ref|YP_835452.1| GTP-binding protein EngA [Burkholderia cenocepacia HI2424] gi|170733168|ref|YP_001765115.1| GTP-binding protein EngA [Burkholderia cenocepacia MC0-3] gi|123370031|sp|Q1BGX0|DER_BURCA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|166224312|sp|A0K7T2|DER_BURCH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|238688579|sp|B1JT88|DER_BURCC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|105898177|gb|ABF81135.1| Small GTP-binding protein domain protein [Burkholderia cenocepacia AU 1054] gi|116647918|gb|ABK08559.1| small GTP-binding protein [Burkholderia cenocepacia HI2424] gi|169816410|gb|ACA90993.1| small GTP-binding protein [Burkholderia cenocepacia MC0-3] Length = 445 Score = 257 bits (657), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 161/469 (34%), Positives = 247/469 (52%), Gaps = 32/469 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+ + + +VDT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGERPYLVVDTGGFEPVA 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I +M QT A+ EA +++F++D + G+ P D +I +LRK PI +V NK + Sbjct: 65 KDGILHEMARQTRQAVEEADVVVFIVDGRNGLAPQDKSIADYLRKTGRPIFLVVNKAEGM 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + Y L + ISA H G +++ I + + Y P E +E+ Sbjct: 125 KYTAVATDFYELGLGDPRAISAAHGDGVTDM---INEALEVAYAGQPEEA------DEDD 175 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P S+ ++IA+VGRPNVGKSTL+N L+G +R++ G TRDS+ + Sbjct: 176 P---------------SRGIKIAIVGRPNVGKSTLVNALIGEDRVIAFDMPGTTRDSIYV 220 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + DTAG+R+ ++ E++E+ +V K++QS+ I+LLDA QD Sbjct: 221 DFERNGKKYTLIDTAGLRRRGKVFEAIEKFSVVKTLQSISDANVVILLLDAQQDISDQDA 280 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSD--KLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 I V G A+V+ +NKWD + D + DL T+ +K L +I+ + +TG Sbjct: 281 HIAGFVVEQGRALVIGVNKWDGLDDHARDRAKADL-TRKLKFLDFAKSHFISA-AKKTGI 338 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLN-SWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 G LM SV + ++ T L + ++ + Q P R +L+Y Q +PP Sbjct: 339 GA--LMRSVDDAYAAAMAKLPTPKLTRALIEAVEFQQPRRRGPVR-PKLRYAHQGGQNPP 395 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +I + + E+YKRYL NR R FSL+G P+R+ F+SS NPY K Sbjct: 396 IIVIHGNALDAVTETYKRYLENRFRETFSLTGTPLRIEFRSSNNPYADK 444 >gi|229918701|ref|YP_002887347.1| GTP-binding protein EngA [Exiguobacterium sp. AT1b] gi|229470130|gb|ACQ71902.1| small GTP-binding protein [Exiguobacterium sp. AT1b] Length = 436 Score = 257 bits (657), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 145/458 (31%), Positives = 242/458 (52%), Gaps = 29/458 (6%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 I +AIVG PN+GKST+FNR++ ++++V + PG+TRDR+YG F+++DT GI Sbjct: 3 IPVVAIVGRPNIGKSTIFNRIIGDRVSIVDDKPGVTRDRIYGTGEWLNRKFHLIDTGGIE 62 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 G + QM Q ELAI+EA +I+F+++ + GIT D + + L + N PI++ NK+ Sbjct: 63 VGDEPLLV-QMRHQAELAIDEADVIIFMVNGREGITAADEEVANLLFRSNKPIVLAVNKV 121 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D + YE YSL F + IS H LG +L +F++ +K + Sbjct: 122 DNFEMRDLMYEFYSLGFGDPFPISGTHGLGLGDLLDQVFELAPEK--------------D 167 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 E E++ ++ +++GRPNVGKS+L N +LG R++ + +G TRD+ Sbjct: 168 EYEYNEDV--------------IQFSLIGRPNVGKSSLTNSILGEERVIVSNIAGTTRDA 213 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 + + I DTAGMRK ++ ES E+ +V ++ +++ +V+LD + Sbjct: 214 IDTPFTRDGQEYVIIDTAGMRKRGKVYESTERYSVMRAQKAIERSNVVLVVLDGEEGIIE 273 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTG 361 QD R+ G A+V+ +NKWD V ++ + K + + + +S T Sbjct: 274 QDKRVAGLAHEAGKAIVIVVNKWDAVEKDDKTMKKMEEKIRQEFLFLDYAPVVFLSALTS 333 Query: 362 EGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 + L L+ + ++ + + RI+TS LN + NP PT + ++ Y TQ+ PP Sbjct: 334 KRLQTLLPVIKQVAETHRRRISTSVLNDVIVDAVAMNPTPTDKGQRLKINYATQVAIEPP 393 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 +F++F P + SYKRYL N++R F +G PI + Sbjct: 394 TFVLFVNDPELLHFSYKRYLENQIRKAFDFTGTPIHIV 431 >gi|126653372|ref|ZP_01725476.1| GTP-binding protein EngA [Bacillus sp. B14905] gi|126589888|gb|EAZ84019.1| GTP-binding protein EngA [Bacillus sp. B14905] Length = 436 Score = 257 bits (657), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 144/454 (31%), Positives = 241/454 (53%), Gaps = 29/454 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST+FNR+V +++++V + PG+TRDR+Y A FNI+DT GI G Sbjct: 6 VAIVGRPNVGKSTIFNRIVGERVSIVEDIPGVTRDRIYSSAEWLTHDFNIIDTGGIEIGD 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +Q+ Q E+AI EA +I+F+ + + G+T D + L K P+++ NK+D Sbjct: 66 EPFL-EQIRQQAEIAIEEADVIIFMTNGREGVTAADEQVAKILYKTKKPVVLAVNKIDNP 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + Y+ Y+L F E IS H LG +L K F Sbjct: 125 DMREMIYDFYALGFGEPWPISGSHGLGLGDLLDECAKHF--------------------- 163 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 PKE+ G +K +++GRPNVGKS+L+N LG +R++ +G TRD++ Sbjct: 164 PKEDEEQYGDDVIK-------FSLIGRPNVGKSSLVNAFLGQDRVIVSDIAGTTRDAIDT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + + I DTAGMRK +I E+ E+ +V ++++++ + +V+++A ++QD Sbjct: 217 PYAYDDQEYVIIDTAGMRKKGKIYETTEKYSVLRALRAIERSDVVLVVMNAEEGIQEQDK 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 +I G AVV+ +NKWD + + + ++ + I +S T + + Sbjct: 277 KIAGYAHEAGKAVVIVVNKWDAIEKDEKTMNVFTQQIREHFLFLDYAPIIFVSANTKQRV 336 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 ++ + +++ RI +S LN ++ + +NP PT R R+ Y TQ+ PP+F+ Sbjct: 337 HQILPIIQRVSENHAMRIQSSILNEVIEDSVARNPAPTDKGRRLRIYYATQVAIKPPTFV 396 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 +F P + SY+R+L NR+R F G PIR+ Sbjct: 397 VFVNEPELMHFSYERFLENRIRETFDFEGTPIRL 430 >gi|15807299|ref|NP_296029.1| GTP-binding protein EngA [Deinococcus radiodurans R1] gi|26006746|sp|Q9RS19|DER_DEIRA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|6460115|gb|AAF11852.1|AE002062_5 conserved hypothetical protein [Deinococcus radiodurans R1] Length = 438 Score = 257 bits (657), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 135/469 (28%), Positives = 260/469 (55%), Gaps = 38/469 (8%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 ++ +AIVG PNVGKS+LFNRL+ ++ AVV + PG+TRD G + + ++DT G+ Sbjct: 1 MHKVAIVGRPNVGKSSLFNRLIGRREAVVADFPGVTRDAKEGLMLYHNHRITLIDTGGLW 60 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 G A + ++ E A+ A ++F++D + G++ D+ + +LR+ P+I+ +NK+ Sbjct: 61 SGDEWEQA--IREKAEWAMEGAQAVIFVLDPREGLSAADYEVADWLRRLGKPVIVTANKI 118 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D++ + E++ L F + V ISAEH G +L + K Sbjct: 119 DSQKHEPYLAELWGLGFGDPVAISAEHARGLDDLMDRVMKYL------------------ 160 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 E V +I+ P+RI+++GRPNVGKS+L+N + +R + G TRDS Sbjct: 161 ---------PEDDEDVPDIA-PIRISLIGRPNVGKSSLLNAITQSDRAIVADLPGTTRDS 210 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 + + W++ + DTAG+RK + ++E +++S ++ + ++++AT Sbjct: 211 LDVEWDYGGQRFVLVDTAGIRK--KPDTAIEDFAIQRSQAAIERSDVIWLVVNAT-DIGD 267 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVSD-KLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 +L++ + +++G V++ +NKWD+V D +L + + + ++ +Y + I+ Sbjct: 268 HELKLANLAYDSGKPVIVVVNKWDLVPDAELKSTEKDLNQKLHHISFAPRVYTSAINDY- 326 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G+ D++ +++ + W++RI TS LN WL+ Q++ P + R+ ++TQ++++P Sbjct: 327 --GIHDMLAEAMKLYEKWQSRIGTSELNRWLEVWQMKQRVPNFHGKPLRMYFMTQVETAP 384 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIK 469 P+F IFC + + +Y+ +L NR+R + L+G+P+R+ ++ K PY K Sbjct: 385 PTFAIFCNRADFVTRAYEGFLQNRIREDLELAGVPVRLKWK-EKGPYKK 432 >gi|262182365|ref|ZP_06041786.1| GTP-binding protein EngA [Corynebacterium aurimucosum ATCC 700975] Length = 537 Score = 257 bits (657), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 149/462 (32%), Positives = 247/462 (53%), Gaps = 40/462 (8%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI- 60 + T+A+VG PNVGKS+L NR + ++ AVV +HPG+TRDR+ A NG F + DT G Sbjct: 102 LCTVAVVGRPNVGKSSLVNRFLGRREAVVEDHPGVTRDRVSYVADWNGQRFFVQDTGGWD 161 Query: 61 --ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVS 118 G + +IA+Q E A++ A +I+F++D+K GIT D + L++ +P+I+VS Sbjct: 162 PNVKGIHAAIARQ----AEQAMDTADVIVFVVDTKVGITETDAVMARKLQRSEVPVILVS 217 Query: 119 NKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 NK D+ + E Y+L + +SA+H G +++ I ++F ++ P H Sbjct: 218 NKFDSETMYADMAEFYALGLGDPWPVSAQHGRGGADVLDEILRLFPEE-PRH-------- 268 Query: 179 KRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 SS+ S P R+A+VG+PNVGKS+L+N+L R + + +G T Sbjct: 269 ----------------SSI--TSGPRRVALVGKPNVGKSSLLNKLTAEERSVVDNAAGTT 310 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 D V + DTAG+RK + + E ++ + E I+L+DA+ Sbjct: 311 VDPVDSLVQLDQRLWKFIDTAGLRKKVKNAQGHEYYASLRTRGVIDAAEVCIMLIDASQE 370 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMV-SDKLNLLQDLRTKAIKNLPQIGDIYINTIS 357 +QD R+++ + G A+V+A NKWD+V D+ L+ + +++LP + + I+ + Sbjct: 371 VSEQDQRVLNMILEAGKALVIAFNKWDLVDEDRRYYLEREIDENLRHLPWVTRVNISAET 430 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 GR + L+ M+ LE W R++T LN+W+++ NPPP NR R+ + TQ Sbjct: 431 GRALQKLEPAMIEALES---WDQRVSTGQLNNWMREAIAANPPPMNNNRLPRVLFATQAS 487 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 + PP+ ++F T + Y+RYL + R F G P+R+ Sbjct: 488 TQPPTIVLFTT--GFLDAGYRRYLERKFRERFGFHGSPVRIA 527 >gi|161524640|ref|YP_001579652.1| GTP-binding protein EngA [Burkholderia multivorans ATCC 17616] gi|189350604|ref|YP_001946232.1| GTP-binding protein EngA [Burkholderia multivorans ATCC 17616] gi|238687037|sp|A9AH00|DER_BURM1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|160342069|gb|ABX15155.1| small GTP-binding protein [Burkholderia multivorans ATCC 17616] gi|189334626|dbj|BAG43696.1| GTP-binding protein [Burkholderia multivorans ATCC 17616] Length = 445 Score = 257 bits (657), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 154/467 (32%), Positives = 242/467 (51%), Gaps = 28/467 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+ + + +VDT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGARPYLVVDTGGFEPVA 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I +M QT A+ EA +++F++D + G+ P D +I +LRK PI +V NK + Sbjct: 65 KDGILHEMARQTRQAVEEADVVVFIVDGRNGLAPQDKSIADYLRKTGRPIFLVVNKAEGM 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + Y L + ISA H G +++ I + + Y + P E +N+ Sbjct: 125 KYTAVATDFYELGLGDPRAISAAHGDGVTDM---INEALEVAYADQPEEEDDNDP----- 176 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 S+ ++IA+VGRPNVGKSTL+N L+G +R++ G TRDS+ + Sbjct: 177 ----------------SRGIKIAIVGRPNVGKSTLVNALIGEDRVIAFDMPGTTRDSIYV 220 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + DTAG+R+ ++ E++E+ +V K++QS+ I+LLDA QD Sbjct: 221 DFERNGKKYTLIDTAGLRRSGKVFEAIEKFSVVKTLQSISDANVVILLLDAQQDISDQDA 280 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 I V G A+V+ +NKWD + + + + + + L + + IS G+ Sbjct: 281 HIAGFVVEQGRALVIGVNKWDGLDE--HARERAKADLTRKLKFLDFAKSHFISAAKKTGI 338 Query: 365 DDLMVSVLEINKLWKTRITTSYLN-SWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 LM SV + ++ T L + ++ + Q P R +L+Y Q +PP Sbjct: 339 GALMRSVDDAYAAAMAKLPTPKLTRALIEAVEFQQPRRRGPVR-PKLRYAHQGGQNPPII 397 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +I + + E+YKRYL NR R FSL+G P+R+ F+SS NPY K Sbjct: 398 VIHGNALDAVTETYKRYLENRFRETFSLTGTPLRIEFRSSTNPYADK 444 >gi|117928440|ref|YP_872991.1| small GTP-binding protein [Acidothermus cellulolyticus 11B] gi|117648903|gb|ABK53005.1| small GTP-binding protein [Acidothermus cellulolyticus 11B] Length = 458 Score = 257 bits (657), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 159/458 (34%), Positives = 242/458 (52%), Gaps = 35/458 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTL NR+V ++ A+V + PG+TRDR+ + +G F IVDT G G Sbjct: 17 VAVVGRPNVGKSTLVNRIVGRRQAIVEDVPGVTRDRVSYEVTWSGRRFTIVDTGGWQPGA 76 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 ++ ++ Q ELA+ A L+LF++D+ GIT D A+ LR+ + P+++V+NK+D+ Sbjct: 77 G-GLSARVTAQAELAVAAADLVLFVVDATVGITETDAAVAKLLRRGDKPVLLVANKVDSA 135 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSE-LHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + E++SL + +SA H G+ + L +VI + P E Sbjct: 136 AGELDTGELWSLGLGQPYTVSALHGRGSGDLLDAVITALPSSGAGGEP----------ET 185 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 +P P R+A+VGRPNVGKS+L+NRL G R L + SG TRD V Sbjct: 186 AP---------------DAPRRVAIVGRPNVGKSSLLNRLAGEERALVDAVSGTTRDPVD 230 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + + DTAG+R+ R E ++ Q++R E +VLLDA P +QD Sbjct: 231 AIVRIGDRRWRVVDTAGLRRRMRDAVGAEFYAGLRTDQAIRDAEAAVVLLDAAEPITEQD 290 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSD--KLNLLQDLRTKAIKNLPQIGDIYINTISGRTG 361 +RIV V + G A+VLA NKWD V +L L +++ T+ L +G IS RTG Sbjct: 291 VRIVQKVIDAGRALVLAFNKWDAVDADRRLALAREIETE----LGHVGWAPRLNISARTG 346 Query: 362 EGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 G++ L ++ W+ R+ T+ LN+WL + P P R R + TQ + PP Sbjct: 347 RGVEKLAAALETALAGWEQRVPTARLNAWLSELVAARPHPVRGGRQPRPLFATQASTRPP 406 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 ++F + ++ +Y R+L RLR F G PI + Sbjct: 407 RIVLFTS--GELEPTYMRFLERRLRETFGFPGTPIDLS 442 >gi|227503688|ref|ZP_03933737.1| GTP-binding protein EngA [Corynebacterium accolens ATCC 49725] gi|227075724|gb|EEI13687.1| GTP-binding protein EngA [Corynebacterium accolens ATCC 49725] Length = 527 Score = 257 bits (657), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 153/462 (33%), Positives = 243/462 (52%), Gaps = 40/462 (8%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI- 60 + T+AIVG PNVGKS+L NR + ++ AVV +HPG+TRDR+ A NG F + DT G Sbjct: 90 LCTVAIVGRPNVGKSSLVNRFLGRREAVVEDHPGVTRDRVSYVADWNGQRFIVQDTGGWD 149 Query: 61 --ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVS 118 G + IA+ Q ELA++ A +I+ ++D+K GIT D + L+K +P+I+VS Sbjct: 150 PNVKGMHADIAR----QAELAMDTADVIVMVVDTKVGITETDEVMARRLQKSPVPVIVVS 205 Query: 119 NKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 NK D+ + + Y+L + +SA+H G +++ I + F Sbjct: 206 NKFDSDNQYADMAQFYALGLGDPWPVSAQHGRGGADVLDEILRSFP-------------- 251 Query: 179 KRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 E P+E + G P R+A+VGRPNVGKS+L+N+L R + + +G T Sbjct: 252 ----EEPRETSITSG---------PRRVALVGRPNVGKSSLLNKLTSEERSVVDNVAGTT 298 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 D V + DTAG+RK + + E ++ + E I+L+DA+ Sbjct: 299 VDPVDSLVQLDEQLWKFIDTAGLRKKVKNAQGHEYYASLRTRGVIDAAEVCIMLIDASEE 358 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWD-MVSDKLNLLQDLRTKAIKNLPQIGDIYINTIS 357 +QD R+++ V +G A+V+A NKWD M D+ L + +++LP + + I+ + Sbjct: 359 ISEQDQRVLNMVLESGKALVIAFNKWDLMDEDRRYYLDREIDEQLRHLPWVTRVNISAET 418 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 GR + L+ M+ LE W R++T LN+W+++ NPPP NR R+ + TQ Sbjct: 419 GRALQKLEPAMIEALES---WDQRVSTGQLNNWMREAIAANPPPMKNNRLPRVLFATQAS 475 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 + PP+ ++F T + SY+RYL + R F G PIR+ Sbjct: 476 TQPPTIVLFTT--GFLDASYRRYLERKFRERFGFHGTPIRIA 515 >gi|27468081|ref|NP_764718.1| GTP-binding protein EngA [Staphylococcus epidermidis ATCC 12228] gi|57867002|ref|YP_188620.1| GTP-binding protein EngA [Staphylococcus epidermidis RP62A] gi|251810897|ref|ZP_04825370.1| GTP-binding protein EngA [Staphylococcus epidermidis BCM-HMP0060] gi|282876093|ref|ZP_06284960.1| ribosome-associated GTPase EngA [Staphylococcus epidermidis SK135] gi|293366558|ref|ZP_06613235.1| ribosome-associated GTPase EngA [Staphylococcus epidermidis M23864:W2(grey)] gi|37999682|sp|Q8CP62|DER_STAES RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|71151866|sp|Q5HP70|DER_STAEQ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|27315626|gb|AAO04760.1|AE016747_257 GTP binding protein [Staphylococcus epidermidis ATCC 12228] gi|57637660|gb|AAW54448.1| GTP-binding protein, Era/TrmE family [Staphylococcus epidermidis RP62A] gi|251805577|gb|EES58234.1| GTP-binding protein EngA [Staphylococcus epidermidis BCM-HMP0060] gi|281295118|gb|EFA87645.1| ribosome-associated GTPase EngA [Staphylococcus epidermidis SK135] gi|291319327|gb|EFE59696.1| ribosome-associated GTPase EngA [Staphylococcus epidermidis M23864:W2(grey)] gi|329735360|gb|EGG71652.1| ribosome biogenesis GTPase Der [Staphylococcus epidermidis VCU045] gi|329737420|gb|EGG73674.1| ribosome biogenesis GTPase Der [Staphylococcus epidermidis VCU028] Length = 436 Score = 257 bits (657), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 146/456 (32%), Positives = 241/456 (52%), Gaps = 31/456 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST+FNR+V +++++V + PG+TRDR+Y FNI+DT GI G Sbjct: 6 VAIVGKPNVGKSTIFNRVVGERISIVEDTPGVTRDRIYSSGEWLTHEFNIIDTGGIEIG- 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + Q+ Q E+AI EA +I+F+++ + G+T D + L K P+++ NK+D Sbjct: 65 DAPFQTQIRAQAEIAIEEADVIIFMVNVREGLTQSDEMVAQMLYKSKKPVVLAVNKVDNL 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + Y+ YSL F + IS H LG +L + +EN + E Sbjct: 125 EMRNDIYDFYSLGFGDPYPISGSHGLGLGDLLDAV---------------VENFNKESED 169 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P + T +R++++GRPNVGKS+L+N +LG R++ + +G TRD++ Sbjct: 170 PYDEDT-------------IRLSIIGRPNVGKSSLVNAILGEERVIVSNVAGTTRDAIDT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 +++ + DTAGMRK ++ ES E+ +V ++++++ E +V++DA +QD Sbjct: 217 EYSYDGQDYVLIDTAGMRKKGKVYESTEKYSVLRALKAIERSEVVLVVIDAEQGIIEQDK 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGD-IYINTISGRTGEG 363 R+ G A+V+ +NKWD V ++ T ++N Q D I +S + G Sbjct: 277 RVAGYAHEEGKAIVIVVNKWDTVEKDSKTMKKF-TDDVRNEFQFLDYAQIAFVSAKEGLR 335 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 L L + + ++ K R+ +S LN + NP PT R + Y TQ+ PP+F Sbjct: 336 LKTLFPYINQASENHKKRVQSSTLNEVVTDAISMNPTPTDKGRRLNVFYTTQVAIEPPTF 395 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 ++F + SY+RYL N++R F G PI + Sbjct: 396 VVFVNDVELMHFSYRRYLENQIRNAFGFEGTPIHII 431 >gi|319892465|ref|YP_004149340.1| GTP-binding protein EngA [Staphylococcus pseudintermedius HKU10-03] gi|317162161|gb|ADV05704.1| GTP-binding protein EngA [Staphylococcus pseudintermedius HKU10-03] gi|323464432|gb|ADX76585.1| GTP-binding protein EngA [Staphylococcus pseudintermedius ED99] Length = 436 Score = 257 bits (657), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 144/455 (31%), Positives = 241/455 (52%), Gaps = 29/455 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST+FNR+V +++++V + PG+TRDR+Y FN++DT GI G Sbjct: 6 VAIVGRPNVGKSTIFNRIVGERVSIVEDTPGVTRDRIYSSGEWLTHEFNVIDTGGIEIG- 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + Q+ Q E+AI+EA +I+F+++ + G+T D + L K P+++ NK+D Sbjct: 65 DAPFQTQIRAQAEIAIDEADVIIFMVNVREGVTQNDELVAQILYKSKKPVVLAVNKVDNP 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + Y+ YSL F E +S H LG +L + K FK ++ Sbjct: 125 DMRNDIYDFYSLGFGEPFPLSGSHGLGLGDLLEEVAKHFK---------------KDTSD 169 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P ++ T +R++++GRPNVGKS+LIN +LG R++ + +G TRD++ Sbjct: 170 PYDDDT-------------IRLSLIGRPNVGKSSLINAILGEERVIVSNIAGTTRDAIDT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 ++++ + DTAGMRK ++ ES E+ +V ++++++ +V+LDA +QD Sbjct: 217 VYSYEGQDYVLIDTAGMRKKGKVYESTEKYSVLRALKAIERSNVVLVVLDAEQGIIEQDK 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 R+ G A+V+ +NKWD + N ++ + KN + I +S + L Sbjct: 277 RVAGYAHEEGKAIVIVVNKWDTLEKDSNTMKKFMDEVRKNFQFLDYAQIAFVSAKEKMRL 336 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 L + E ++ K R+ +S LN + NP PT R + Y TQ+ PP+F+ Sbjct: 337 RTLFPLINEASENHKKRVQSSTLNEVITDAIAMNPTPTDKGRRLNIFYATQVAIEPPTFV 396 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 +F + SYKRYL N++R F G P+ + Sbjct: 397 VFVNDVELMHFSYKRYLENQIRQAFGFEGTPVHII 431 >gi|229824833|ref|ZP_04450902.1| hypothetical protein GCWU000182_00182 [Abiotrophia defectiva ATCC 49176] gi|229790836|gb|EEP26950.1| hypothetical protein GCWU000182_00182 [Abiotrophia defectiva ATCC 49176] Length = 445 Score = 257 bits (657), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 149/465 (32%), Positives = 253/465 (54%), Gaps = 41/465 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFN+L +++V + PG+TRDR+Y A F ++DT GI Sbjct: 5 VAIVGRPNVGKSTLFNKLAGSDISIVKDTPGVTRDRIYADAEWLNKAFTMIDTGGIEPDT 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + M +Q E+AI+ A +I+F+ D K G+ D+ + LRK P+++V NK+D Sbjct: 65 SDMMLANMREQAEIAIDTADVIIFITDVKTGLVDSDNQVAHMLRKSKKPVVLVVNKVDNP 124 Query: 125 IAQR-NFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + Q+ + YE Y+L E IS+ + G ++ + K F + P ++ Sbjct: 125 VKQQADVYEFYNLGLGEPFPISSVNQTGIGDMLDEVIKHFPEDSP---------EAEEDD 175 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 +PK IA++G+PNVGKS++INRLLG NR++ +G TRD++ Sbjct: 176 TPK-------------------IAIIGKPNVGKSSIINRLLGENRVIVSDVAGTTRDAID 216 Query: 244 --ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 I N K++ + DTAG+R+ SRI E +E ++ +++ +V + ++++DAT + Sbjct: 217 TRIRRNGKDYI--MIDTAGIRRKSRIKEDIEYYSIVRTVSAVERADIVVLVIDATEGITE 274 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKN----LPQIGDIYINTIS 357 QD +I G +++A+NKWD++ +K + + TK +K +P ++I+ +S Sbjct: 275 QDAKIAGIAHERGKGIIVAVNKWDLI-EKTDKTMNEHTKKLKEILAYMPYAEFLFISAVS 333 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 G+ L DL+ V++ + L R++T LN L + PPT R ++ YIT++ Sbjct: 334 GQRLNKLFDLIDVVIQYHTL---RVSTGVLNDILAEAIAMQQPPTDKGRRLKIYYITEVS 390 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 PP+F++F + SY RY+ N++R F +G P+R + Sbjct: 391 VKPPTFILFVNSKKLMHYSYTRYIENKIREAFGFTGTPLRFIIRE 435 >gi|254514003|ref|ZP_05126064.1| GTP-binding protein EngA [gamma proteobacterium NOR5-3] gi|219676246|gb|EED32611.1| GTP-binding protein EngA [gamma proteobacterium NOR5-3] Length = 474 Score = 257 bits (657), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 149/468 (31%), Positives = 250/468 (53%), Gaps = 30/468 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +IA+VG PNVGKSTLFN+L + + A+V N G+TRDR YG+ F ++DT G+ Sbjct: 1 MLPSIALVGRPNVGKSTLFNQLTRSRDALVANLSGLTRDRKYGEGRSEDRAFIVIDTGGV 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + G I M +Q+ LAI+EA ++L L+D+K G+ P D + +LR+K+ +V NK Sbjct: 61 S-GDEEGIDAAMAEQSLLAIDEADVVLLLVDAKDGLNPVDVQLVQYLRQKSRDFHLVVNK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D R + +SL + I+A H G ++ + + P+ +++ + Sbjct: 120 IDGRDPDVAISDFHSLGIASMHAIAASHGRGVRQMIETVLESV-------PIPEADDDAQ 172 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 E+ R+AVVGRPNVGKSTL+NR+LG +R++ Q G TRD Sbjct: 173 EEQGGT------------------RVAVVGRPNVGKSTLVNRILGEDRVVVYDQPGTTRD 214 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 SV I+++ + P + DTAG+R+ + E++E+ ++ K++ ++ ++L+D Sbjct: 215 SVYINFSREGRPYTLIDTAGVRRRKNVREAVEKFSIIKTLSAISDANVVVLLVDGQEGLV 274 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVS-DKLNLLQDLRTKAIKNLPQIGDIYINTISGR 359 QDL ++ + G A+VLA+NKWD + D+ + +R++ + L + ++ IS Sbjct: 275 DQDLHLLGNCLEAGRALVLAVNKWDGLDPDQKDA---IRSELDRRLRFVDFADMHFISAL 331 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 G G+ L S+ + TS L L+ +PPP + R +L+Y + Sbjct: 332 HGSGVGTLFGSIDAAYTAAMQPMGTSRLTRILEDAVADHPPPLVNGRRIKLRYAHAGGRN 391 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 PP ++ +K+P SY+RYL L+G P+R+ F+SS NP+ Sbjct: 392 PPRVVVHGNQTDKVPSSYQRYLEKTFSRCLELTGTPLRIEFRSSDNPF 439 >gi|319400824|gb|EFV89043.1| small GTP-binding domain protein [Staphylococcus epidermidis FRI909] Length = 436 Score = 257 bits (657), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 146/456 (32%), Positives = 241/456 (52%), Gaps = 31/456 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST+FNR+V +++++V + PG+TRDR+Y FNI+DT GI G Sbjct: 6 VAIVGKPNVGKSTIFNRVVGERVSIVEDTPGVTRDRIYSSGEWLTHEFNIIDTGGIEIG- 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + Q+ Q E+AI EA +I+F+++ + G+T D + L K P+++ NK+D Sbjct: 65 DAPFQTQIRAQAEIAIEEADVIIFMVNVREGLTQSDEMVAQMLYKSKKPVVLAVNKVDNL 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + Y+ YSL F + IS H LG +L + +EN + E Sbjct: 125 EMRNDIYDFYSLGFGDPYPISGSHGLGLGDLLDAV---------------VENFNKESED 169 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P + T +R++++GRPNVGKS+L+N +LG R++ + +G TRD++ Sbjct: 170 PYDEDT-------------IRLSIIGRPNVGKSSLVNAILGEERVIVSNVAGTTRDAIDT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 +++ + DTAGMRK ++ ES E+ +V ++++++ E +V++DA +QD Sbjct: 217 EYSYDGQDYVLIDTAGMRKKGKVYESTEKYSVLRALKAIERSEVVLVVIDAEQGIIEQDK 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGD-IYINTISGRTGEG 363 R+ G A+V+ +NKWD V ++ T ++N Q D I +S + G Sbjct: 277 RVAGYAHEEGKAIVIVVNKWDTVEKDSKTMKKF-TDDVRNEFQFLDYAQIAFVSAKEGLR 335 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 L L + + ++ K R+ +S LN + NP PT R + Y TQ+ PP+F Sbjct: 336 LKTLFPYINQASENHKKRVQSSTLNEVVTDAISMNPTPTDKGRRLNVFYTTQVAIEPPTF 395 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 ++F + SY+RYL N++R F G PI + Sbjct: 396 VVFVNDVELMHFSYRRYLENQIRNAFGFEGTPIHII 431 >gi|329725422|gb|EGG61905.1| ribosome biogenesis GTPase Der [Staphylococcus epidermidis VCU144] Length = 436 Score = 257 bits (656), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 146/456 (32%), Positives = 241/456 (52%), Gaps = 31/456 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST+FNR+V +++++V + PG+TRDR+Y FNI+DT GI G Sbjct: 6 VAIVGKPNVGKSTIFNRVVGERVSIVEDTPGVTRDRIYSSGEWLTHEFNIIDTGGIEIG- 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + Q+ Q E+AI EA +I+F+++ + G+T D + L K P+++ NK+D Sbjct: 65 DAPFQTQIRAQAEIAIEEADVIIFMVNVREGLTQSDEMVAQMLYKSKKPVVLAVNKVDNL 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + Y+ YSL F + IS H LG +L + +EN + E Sbjct: 125 EMRNDIYDFYSLGFGDPYPISGSHGLGLGDLLDAV---------------VENFNKESED 169 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P + T +R++++GRPNVGKS+L+N +LG R++ + +G TRD++ Sbjct: 170 PYDEDT-------------IRLSIIGRPNVGKSSLVNAILGEERVIVSNVAGTTRDAIDT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 +++ + DTAGMRK ++ ES E+ +V ++++++ E +V++DA +QD Sbjct: 217 EYSYDGQDYVLIDTAGMRKKGKVYESTEKYSVLRALKAIERSEVVLVVIDAEQGIIEQDK 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGD-IYINTISGRTGEG 363 R+ G A+V+ +NKWD V ++ T ++N Q D I +S + G Sbjct: 277 RVAGYAHEEGKAIVIVVNKWDTVEKDSKTMKKF-TDDVRNEFQFLDYAQIAFVSAKEGLR 335 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 L L + + ++ K R+ +S LN + NP PT R + Y TQ+ PP+F Sbjct: 336 LKTLFPYINQASENHKKRVQSSTLNEVVTDAISMNPTPTDKGRRLNVFYTTQVAIEPPTF 395 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 ++F + SY+RYL N++R F G PI + Sbjct: 396 VVFVNDVELMHFSYRRYLENQIRNAFGFEGTPIHII 431 >gi|254492694|ref|ZP_05105865.1| putative GTPase [Methylophaga thiooxidans DMS010] gi|224462215|gb|EEF78493.1| putative GTPase [Methylophaga thiooxydans DMS010] Length = 468 Score = 257 bits (656), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 157/467 (33%), Positives = 248/467 (53%), Gaps = 23/467 (4%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M IA+VG PNVGKST+FNRL + + A+V ++ G+TRDR+YG + F ++DT G+ Sbjct: 1 MKPVIALVGRPNVGKSTIFNRLTRSRDALVADYAGLTRDRIYGTVREENLDFILIDTGGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 D + +++ M Q +LAI+EA L+LF++D +AG+ P D + LR P+ +V NK Sbjct: 61 TD-QTDNMSDLMRKQAKLAIDEADLVLFIVDGRAGLMPSDTDVAQQLRSDGKPVRLVINK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + + + YSL E ISA G +EL I K P + E ++ Sbjct: 120 TEGEQREMVAADFYSLGLGEPQVISATQGRGFTELLEEI----KVCLPQAEVLFEEEDEA 175 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 ++ P + +R+AV+GRPNVGKSTLINRLLG R++ + G TRD Sbjct: 176 TDDRPDD----------------IRLAVLGRPNVGKSTLINRLLGEERVVAFDEPGTTRD 219 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ I + + DTAG+R+ S+++E LE+ +V K++Q++ +++LDA Sbjct: 220 SIHIPFEKDGVNYTLIDTAGVRRRSKVSEKLEKFSVLKTLQALEDANVALLVLDAHEGIV 279 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 +QDL + + +G AVVLA+NKWD + + + T + LP + + IS Sbjct: 280 EQDLHLAGLILESGRAVVLAVNKWDGLEKSER--EWVATNIERRLPFMNFAKTHFISALH 337 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G G+ L+ +V + + T++ TS L L+ + PP + R + +Y +P Sbjct: 338 GSGVGLLLKTVRQAYQSAMTKVPTSRLTRVLEDAVSDHQPPLVRGRRIKFRYAHLGGKNP 397 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 P +I + P SYKRYL N R L G P+ + F++S NP+ Sbjct: 398 PRIIIHGNQTDATPNSYKRYLENYFRDVLKLQGTPVMIEFKTSDNPF 444 >gi|52786163|ref|YP_091992.1| GTP-binding protein EngA [Bacillus licheniformis ATCC 14580] gi|163119516|ref|YP_079584.2| GTP-binding protein EngA [Bacillus licheniformis ATCC 14580] gi|319645250|ref|ZP_07999483.1| GTP-binding protein engA [Bacillus sp. BT1B_CT2] gi|81825274|sp|Q65I15|DER_BACLD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|52348665|gb|AAU41299.1| YphC [Bacillus licheniformis ATCC 14580] gi|145903023|gb|AAU23946.2| GTP-binding protein essential for cell growth [Bacillus licheniformis ATCC 14580] gi|317393059|gb|EFV73853.1| GTP-binding protein engA [Bacillus sp. BT1B_CT2] Length = 436 Score = 257 bits (656), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 147/462 (31%), Positives = 242/462 (52%), Gaps = 33/462 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST+FNR+ +++++V + PG+TRDR+Y A FN++DT GI G Sbjct: 6 VAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNHDFNLIDTGGIEVGD 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +A Q+ Q E+A+ EA +I+F+ + + G+T D + L + P+++ NK+D Sbjct: 66 EPFLA-QIRHQAEIAMEEADVIIFMTNGREGVTAADEEVAKILYRTKKPVVLAVNKVDNP 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + N Y+ Y+L F E IS H LG +L + + FK I K +E Sbjct: 125 EMRANIYDFYALGFGEPFPISGTHGLGLGDLLDAVSEHFKN---------IPETKYEDEV 175 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 ++ ++GRPNVGKS+L+N ++G R++ + +G TRD++ Sbjct: 176 -------------------VQFCLIGRPNVGKSSLVNAMIGEERVIVSNIAGTTRDAIDT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + I DTAGMRK ++ E+ E+ +V ++++++ E V+LD +QD Sbjct: 217 RFTYNQRDFVIVDTAGMRKKGKVYEATEKYSVLRALKAIDRSEVVCVVLDGEEGIIEQDK 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 RI G AVV+ +NKWD V +++ K + + + +S T + + Sbjct: 277 RIAGYAHEAGKAVVIVVNKWDAVEKDERTMKEFEEKVRDHFQFLDYAPVLFMSALTKKRI 336 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLK--YITQIQSSPPS 422 LM +V+ ++ R+ T+ LN + NP PT + NRLK Y TQ+ PP+ Sbjct: 337 HTLMPAVMTASENHSMRVQTNILNDIIMDAVAMNPTPT--HNGNRLKIYYATQVAVKPPT 394 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 F++F P + SY+R+L NR+R F G PIR+ ++ K Sbjct: 395 FVVFVNDPELMHFSYERFLENRIRDAFGFEGTPIRIFARARK 436 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 38/124 (30%), Positives = 64/124 (51%), Gaps = 2/124 (1%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI- 60 + ++G PNVGKS+L N ++ ++ +V N G TRD + + N F IVDTAG+ Sbjct: 175 VVQFCLIGRPNVGKSSLVNAMIGEERVIVSNIAGTTRDAIDTRFTYNQRDFVIVDTAGMR 234 Query: 61 ADGKNCSIAKQMNDQTEL-AINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 GK ++ + L AI+ + ++ ++D + GI D I + + ++IV N Sbjct: 235 KKGKVYEATEKYSVLRALKAIDRSEVVCVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVN 294 Query: 120 KMDT 123 K D Sbjct: 295 KWDA 298 >gi|317132122|ref|YP_004091436.1| ribosome-associated GTPase EngA [Ethanoligenens harbinense YUAN-3] gi|315470101|gb|ADU26705.1| ribosome-associated GTPase EngA [Ethanoligenens harbinense YUAN-3] Length = 441 Score = 257 bits (656), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 145/455 (31%), Positives = 236/455 (51%), Gaps = 30/455 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFN+LV +++++V + PG+TRDR+Y G F + DT GI Sbjct: 6 VAIVGRPNVGKSTLFNKLVGRRISIVEDTPGVTRDRIYAPCEWCGHTFLLADTGGIEMKS 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + +Q + AI+ A +I+F+ D ++G+T D+ I LR+ + P+++ NK DT Sbjct: 66 DDVFLSGIREQAKAAIDTADVIIFMTDLRSGVTAQDNEIADMLRRSHRPVVLCVNKADTL 125 Query: 125 I-AQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 YE Y+L + +S+ H GT +L +H +E++ EE Sbjct: 126 GNTPSEVYEFYNLGLGDPFPVSSVHGHGTGDLL------------DHVVELLPGEGDGEE 173 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 + +R+AV+G+PN GKS+L+NR+ G R+L G TRD+V Sbjct: 174 D-----------------EAVRVAVIGKPNAGKSSLVNRIAGEERMLVSDIPGTTRDAVD 216 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + DTAG+R+ S++ E++E+ +V ++ +V + ++++DAT F +QD Sbjct: 217 TRIENEYGTFVFVDTAGIRRHSKVQEAVERYSVMRAFSAVERADVCVMMIDATTGFTEQD 276 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 +I G A ++A+NKWD+V + R K ++ + I +S +TG Sbjct: 277 SKIAGYAHEQGKASIIAVNKWDLVEKTEKTMDAFRKKLEQDFSFMSYAPILFLSAKTGRN 336 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 +D L V + ++ RI T LN L + PPT + ++ Y+TQ + PP+F Sbjct: 337 IDKLFQMVQRVRVAYERRIPTGQLNDVLADAVARVQPPTDKGKRLKILYMTQPTACPPTF 396 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 ++F SY+RYL NR+R F L G PIR Sbjct: 397 VVFVNRAALFHFSYQRYLENRIRETFGLEGTPIRF 431 >gi|299538553|ref|ZP_07051836.1| GTP-binding protein EngA [Lysinibacillus fusiformis ZC1] gi|298726140|gb|EFI66732.1| GTP-binding protein EngA [Lysinibacillus fusiformis ZC1] Length = 436 Score = 257 bits (656), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 145/455 (31%), Positives = 241/455 (52%), Gaps = 29/455 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST+FNR+V +++++V + PG+TRDR+Y A FNI+DT GI G Sbjct: 6 VAIVGRPNVGKSTIFNRIVGERVSIVEDIPGVTRDRIYSSAEWLTHDFNIIDTGGIEIGD 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +Q+ Q E+AI+EA +I+F+ + + G+T D + L K P+++ NK+D Sbjct: 66 EPFL-EQIRQQAEIAIDEADVIIFMTNGREGVTAADEQVAKILYKTKKPVVLAVNKIDNP 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + Y+ Y+L F E IS H LG +L K F Sbjct: 125 DMREMIYDFYALGFGEPWPISGSHGLGLGDLLDECAKHF--------------------- 163 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 PKE+ G +K +++GRPNVGKS+L+N LG R++ + +G TRD++ Sbjct: 164 PKEDEEQYGDDVIK-------FSLIGRPNVGKSSLVNAFLGQERVIVSNIAGTTRDAIDT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + I DTAGMRK +I E+ E+ +V ++++++ + +V+L+A ++QD Sbjct: 217 PYAYDGQEYVIIDTAGMRKKGKIYETTEKYSVLRALRAIERSDVVLVVLNAEEGIQEQDK 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 +I G AV++ +NKWD + + + ++ + I +S T + + Sbjct: 277 KIAGYAHEAGKAVIIVVNKWDAIEKDEKTMNVFTQQIREHFLFLDYAPIIFVSANTKQRV 336 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 ++ + +++ RI +S LN ++ + +NP PT R R+ Y TQ+ PP+F+ Sbjct: 337 HQILPIIQRVSENHAMRIQSSILNEVIEDSVARNPAPTDKGRRLRIYYATQVAIKPPTFV 396 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 IF P + SY+R+L NR+R F G PIR+ Sbjct: 397 IFVNEPELMHFSYERFLENRIRETFDFEGTPIRLI 431 >gi|242373782|ref|ZP_04819356.1| GTP-binding protein EngA [Staphylococcus epidermidis M23864:W1] gi|242348519|gb|EES40121.1| GTP-binding protein EngA [Staphylococcus epidermidis M23864:W1] Length = 436 Score = 257 bits (656), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 147/456 (32%), Positives = 241/456 (52%), Gaps = 31/456 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST+FNR+V +++++V + PG+TRDR+Y FNI+DT GI G Sbjct: 6 VAIVGKPNVGKSTIFNRVVGERVSIVEDTPGVTRDRIYSSGEWLTHEFNIIDTGGIEIG- 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + Q+ Q E+AI+EA +I+F+++ + G+T D + L K P+++ NK+D Sbjct: 65 DAPFQTQIRAQAEIAIDEADVIIFMVNVREGLTQSDEMVAQMLYKSKKPVVLAVNKVDNP 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + Y+ YSL F + IS H LG +L + +EN E Sbjct: 125 EMRNDIYDFYSLGFGDPYPISGSHGLGLGDLLDAV---------------VENFGEETED 169 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P + T +R++++GRPNVGKS+L+N +LG R++ + +G TRD+V Sbjct: 170 PYDEDT-------------IRLSIIGRPNVGKSSLVNAILGEERVIVSNVAGTTRDAVDT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + +++ + DTAGMRK ++ ES E+ +V ++++++ +V++DA +QD Sbjct: 217 EYTYEDQDYVLIDTAGMRKKGKVYESTEKYSVLRALKAIERSNVVLVVIDAEQGIIEQDK 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGD-IYINTISGRTGEG 363 R+ G A+V+ +NKWD V ++ T+ ++N Q D I +S + Sbjct: 277 RVAGYAHEEGKAIVIVVNKWDTVEKDSKTMKKF-TEDVRNEFQFLDYAQIAFVSAKESLR 335 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 L L + E ++ K R+ +S LN + NP PT R + Y TQ+ PP+F Sbjct: 336 LRTLFPYIKEASENHKKRVQSSTLNEVVTDAISMNPTPTDKGRRLNVFYTTQVAIEPPTF 395 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 ++F + SYKRYL N++R F G PI + Sbjct: 396 VVFVNDVELMHFSYKRYLENQIRDAFGFEGTPIHII 431 >gi|167587055|ref|ZP_02379443.1| GTP-binding protein EngA [Burkholderia ubonensis Bu] Length = 445 Score = 257 bits (656), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 160/469 (34%), Positives = 239/469 (50%), Gaps = 32/469 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+ + + +VDT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGERPYLVVDTGGFEPVA 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I +M QT A+ EA +++F++D + G+ P D +I +LRK PI +V NK + Sbjct: 65 KDGILHEMARQTRQAVEEADVVVFIVDGRNGLAPQDKSIADYLRKTGRPIFLVVNKSEGM 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + Y L + ISA H G +E+ I + Y P E E+ Sbjct: 125 KYTAVASDFYELGLGDPRAISAAHGDGVTEM---INEALGVAYAGQPEEEDEDKA----- 176 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 S+ +IA+VGRPNVGKSTL+N L+G +R++ G TRDS+ + Sbjct: 177 ----------------SRGTKIAIVGRPNVGKSTLVNTLIGEDRVIAFDMPGTTRDSIYV 220 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + P + DTAG+R+ ++ E++E+ +V K++QS+ I+LLDA QD Sbjct: 221 DFERNGKPYTLIDTAGLRRRGKVFEAIEKFSVVKTLQSIADANVVILLLDARQDISDQDA 280 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKA--IKNLPQIGDIYINTISGRTGE 362 I V G A+V+ +NKWD + + RTKA + L + + IS Sbjct: 281 HIAGFVVEQGRALVVGVNKWDGLDPHVR----ERTKADLTRKLKFLEFAKFHFISAAEKT 336 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWL-QKTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 G+ LM SV + ++ T L L + + Q P R +L+Y Q +PP Sbjct: 337 GIGPLMRSVDDAYGAAMAKLPTPKLTRALIEAVEFQQPRRRGPVR-PKLRYAHQGGQNPP 395 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +I + + ++YKRYL NR R FSL+G P+R+ F+SS NPY K Sbjct: 396 VIVIHGNALDAVTDTYKRYLENRFRETFSLTGTPLRIEFRSSHNPYADK 444 >gi|225018722|ref|ZP_03707914.1| hypothetical protein CLOSTMETH_02672 [Clostridium methylpentosum DSM 5476] gi|224948450|gb|EEG29659.1| hypothetical protein CLOSTMETH_02672 [Clostridium methylpentosum DSM 5476] Length = 440 Score = 257 bits (656), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 145/455 (31%), Positives = 238/455 (52%), Gaps = 29/455 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTLFN+L+ ++M++V + PG+TRDR+Y + F +VDT GI Sbjct: 6 VAVVGRPNVGKSTLFNKLIGRRMSIVDDTPGVTRDRIYSECEWCSRPFLLVDTGGIEPES 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N I QM Q ELAI A +I+ + D + G+T D + + L K P+++ NK D+ Sbjct: 66 NDIILSQMRRQAELAIQSAQVIILVTDLRDGVTATDQDVAAMLIKSGKPVVLCVNKCDSV 125 Query: 125 IAQR-NFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 A YE Y+L E + +SA H GT +L +F E Sbjct: 126 GAPPIGIYEFYNLGLGEPIAVSAAHGHGTGDLLDAVF---------------------EH 164 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 P++ + S+K +A+VG+PNVGKS+LIN++ G R++ +G TRD+V Sbjct: 165 MPEDAEAEYAEESIK-------VAIVGKPNVGKSSLINKIAGEERVIVSDIAGTTRDAVD 217 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + DTAG+R+ S++ +++E+ +V ++ +V + ++++DAT+ F +QD Sbjct: 218 TVVTRGEDQFVLIDTAGIRRKSKVLDTIERYSVLRAHMAVDRADVCVIIIDATVGFTEQD 277 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 +I G ++A+NKWD V + + + K + + IS +TG+ Sbjct: 278 SKIAGYAHEQGKGCIIAINKWDAVEKDTHTMNEFTKKLQTDFSFMSYAPFVFISAKTGQR 337 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 LD+L + ++ + RI+T LN L + PP+ + ++ Y+TQ ++PP+F Sbjct: 338 LDNLFTLIKKVKEQNSMRISTGMLNDLLSYATARVQPPSDKGKRLKIYYMTQPSTNPPTF 397 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 + F SY+RYL N++R F L G PIR Sbjct: 398 VAFVNKAELFHFSYQRYLENQIRETFGLEGTPIRF 432 >gi|78066578|ref|YP_369347.1| GTP-binding protein EngA [Burkholderia sp. 383] gi|123728977|sp|Q39FR3|DER_BURS3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|77967323|gb|ABB08703.1| Small GTP-binding protein [Burkholderia sp. 383] Length = 445 Score = 257 bits (656), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 162/469 (34%), Positives = 246/469 (52%), Gaps = 32/469 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+ + + +VDT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGERPYLVVDTGGFEPVA 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I +M QT A+ EA +++F++D + G+ P D +I +LRK PI +V NK + Sbjct: 65 KDGILHEMARQTRQAVEEADVVVFIVDGRNGLAPQDKSIADYLRKTGRPIFLVVNKAEGM 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + Y L + ISA H G +++ I + + Y P E +E+ Sbjct: 125 KYTAVATDFYELGLGDPRAISAAHGDGVTDM---INEALEVAYAGQPEEA------DEDD 175 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P S+ ++IA+VGRPNVGKSTL+N L+G +R++ G TRDS+ + Sbjct: 176 P---------------SRGIKIAIVGRPNVGKSTLVNALIGEDRVIAFDMPGTTRDSIYV 220 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + DTAG+R+ ++ E++E+ +V K++QS+ I+LLDA QD Sbjct: 221 DFERNGKKYTLIDTAGLRRRGKVFEAIEKFSVVKTLQSISDANVVILLLDAQQDISDQDA 280 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSD--KLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 I V G A+V+ +NKWD + + + DL T+ +K L YI+ + +TG Sbjct: 281 HIAGFVVEQGRALVIGVNKWDGLDEHARDRAKADL-TRKLKFLDFAKSHYISA-AKKTGI 338 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWL-QKTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 G LM SV + ++ T L L + + Q P R +L+Y Q +PP Sbjct: 339 GA--LMRSVDDAYAAAMAKLPTPKLTRALIEAVEFQQPRRRGPVR-PKLRYAHQGGQNPP 395 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +I + + E+YKRYL NR R FSL+G P+R+ F+SS NPY K Sbjct: 396 LIVIHGNALDAVTETYKRYLENRFRETFSLTGTPLRIEFRSSNNPYADK 444 >gi|58426746|gb|AAW75783.1| GTP-binding protein [Xanthomonas oryzae pv. oryzae KACC10331] Length = 490 Score = 257 bits (656), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 158/473 (33%), Positives = 249/473 (52%), Gaps = 33/473 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIIN-GVIFNIVDTAG 59 M+ +A+VG PNVGKST+FN L + + A+V + PG+TRDR YG ++ F +VDT G Sbjct: 26 MLPLVALVGRPNVGKSTIFNALTRTRDALVHDQPGVTRDRNYGVCRLDEQQPFIVVDTGG 85 Query: 60 IADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 IA G +A Q A EA L+LF++D + G + D I ++LRK P ++V N Sbjct: 86 IA-GDEDGLAGATARQARAAAGEADLVLFVVDGREGESSLDDEILAWLRKLARPTVLVIN 144 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNK 179 K+D + E F ++V +SA H G EL LE + Sbjct: 145 KIDGTDEETVRSEFARYGFSDVVALSAAHRQGIDEL----------------LEEV---- 184 Query: 180 RNEESPKENITSEGKSS-VKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 + EG + N +RIA VGRPNVGKSTL+NRLLG R++ G T Sbjct: 185 ------GARLPEEGSGELLDNDPARVRIAFVGRPNVGKSTLVNRLLGEERMIASEVPGTT 238 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RDS+++ + DTAG+R+ ++ E++E+ + K++Q++ C+ +++LDAT Sbjct: 239 RDSIAVDLERDGRQYRLIDTAGLRRRGKVEEAVEKFSAFKTLQAIERCQVAVLMLDATEG 298 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSD-KLNLLQDLRTKAIKNLPQIGDIYINTIS 357 QD I+ ++ + G A+V+A+NKWD SD + +DL ++ + + + I+ + Sbjct: 299 VTDQDATILGAILDAGRALVVAINKWDGQSDYQRAQAEDLLSRKLGFVSWAEAVRISALH 358 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 G G+ +L ++ + +TS +N L+ NPPP+I ++L+Y+ Sbjct: 359 ---GSGMRELFQAIHRAHASATHEFSTSEVNQALEIAYETNPPPSIRGHVSKLRYVHPGG 415 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 ++PP+F++ T +PESYKRYL N R F L G P+ F+ NPY K Sbjct: 416 ANPPTFIVHGTRLKVLPESYKRYLENFFRKRFKLVGTPVCFIFREGANPYEGK 468 >gi|116491039|ref|YP_810583.1| GTPase [Oenococcus oeni PSU-1] gi|290890519|ref|ZP_06553594.1| hypothetical protein AWRIB429_0984 [Oenococcus oeni AWRIB429] gi|116091764|gb|ABJ56918.1| Predicted GTPase [Oenococcus oeni PSU-1] gi|290479915|gb|EFD88564.1| hypothetical protein AWRIB429_0984 [Oenococcus oeni AWRIB429] Length = 442 Score = 257 bits (656), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 160/465 (34%), Positives = 249/465 (53%), Gaps = 30/465 (6%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 YTIAIVG PNVGKSTLFNR+V + A+V + G+TRDRLY +A NG F+++DT GI+ Sbjct: 5 YTIAIVGRPNVGKSTLFNRIVGTRKAIVNDISGVTRDRLYEKAEWNGSEFSVIDTGGISA 64 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + I K++ +Q ELAI EA I+F++D GIT D + L + PI + N +D Sbjct: 65 SNDVFI-KEIKEQAELAIKEADAIIFVVDGHNGITKDDQLVAKVLYRSKQPIYLAVNHLD 123 Query: 123 TRIAQRNF-YEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 I Q + Y+ YSL + ISA H G ++L I FK Sbjct: 124 N-IEQHDLIYDFYSLGLGDPYPISAVHGNGVADLLDDIVDAFKN---------------- 166 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 + G S ++ ++IA++GRPNVGKS++ N L+ NR + G TRD+ Sbjct: 167 --------GTNGGVSDQDQEDQIKIAIIGRPNVGKSSIFNSLIKRNRSIVSDIQGTTRDT 218 Query: 242 VSISW-NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 V + + + + I DTAG+RK ++ ES E+ V ++ ++ + + +V++DA+ + Sbjct: 219 VDSQFEDNQGNVFTISDTAGIRKSGKVIESTEKYAVLRAQMAIESADVILVVIDASTGIQ 278 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIY-INTISGR 359 QD I G AVV+ +NKWD + +K N T+ I+ + D I +S + Sbjct: 279 DQDKHIAGLATEEGRAVVIVVNKWDAI-EKDNYSMKQFTEQIREEFKFLDYAPIMFVSAK 337 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 T + LD + ++++ K RI +S LN + +P PT + R+ Y T++ + Sbjct: 338 TNQRLDQIPEMAIKVDNNHKMRIQSSILNQTILDAIALHPTPTKNGKRLRVYYATEVAVA 397 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 PP+F IF P + SY+RYL N++R NF +G PIR+ ++ K Sbjct: 398 PPTFAIFVNDPELMHFSYERYLENQIRKNFDFAGTPIRLRIRARK 442 Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 50/176 (28%), Positives = 86/176 (48%), Gaps = 16/176 (9%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 +SK IA+VGRPNVGKSTL NR++G + + SG+TRD + W + DT Sbjct: 1 MSKKYTIAIVGRPNVGKSTLFNRIVGTRKAIVNDISGVTRDRLYEKAEWNGSEFSVIDTG 60 Query: 260 GMRKPSR--ITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 G+ + I E EQ + +++ + I ++D K D + ++ + + Sbjct: 61 GISASNDVFIKEIKEQAEL-----AIKEADAIIFVVDGHNGITKDDQLVAKVLYRSKQPI 115 Query: 318 VLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 LA+N D + ++ +L+ D + +GD Y IS G G+ DL+ +++ Sbjct: 116 YLAVNHLDNI-EQHDLIYDFYSLG------LGDPY--PISAVHGNGVADLLDDIVD 162 >gi|221198076|ref|ZP_03571122.1| ribosome-associated GTPase EngA [Burkholderia multivorans CGD2M] gi|221204366|ref|ZP_03577383.1| ribosome-associated GTPase EngA [Burkholderia multivorans CGD2] gi|221212773|ref|ZP_03585749.1| ribosome-associated GTPase EngA [Burkholderia multivorans CGD1] gi|221166986|gb|EED99456.1| ribosome-associated GTPase EngA [Burkholderia multivorans CGD1] gi|221175223|gb|EEE07653.1| ribosome-associated GTPase EngA [Burkholderia multivorans CGD2] gi|221182008|gb|EEE14409.1| ribosome-associated GTPase EngA [Burkholderia multivorans CGD2M] Length = 445 Score = 257 bits (656), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 154/467 (32%), Positives = 242/467 (51%), Gaps = 28/467 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+ + + +VDT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGARPYLVVDTGGFEPVA 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I +M QT A+ EA +++F++D + G+ P D +I +LRK PI +V NK + Sbjct: 65 KDGILHEMARQTRQAVEEADVVVFIVDGRNGLAPQDKSIADYLRKTGRPIFLVVNKAEGM 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + Y L + ISA H G +++ I + + Y + P E +N+ Sbjct: 125 KYTAVATDFYELGLGDPRAISAAHGDGVTDM---INEALEVAYADQPEEEDDNDP----- 176 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 S+ ++IA+VGRPNVGKSTL+N L+G +R++ G TRDS+ + Sbjct: 177 ----------------SRGIKIAIVGRPNVGKSTLVNALIGEDRVIAFDMPGTTRDSIYV 220 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + DTAG+R+ ++ E++E+ +V K++QS+ I+LLDA QD Sbjct: 221 DFERNGKKYTLIDTAGLRRRGKVFEAIEKFSVVKTLQSISDANVVILLLDAQQDISDQDA 280 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 I V G A+V+ +NKWD + + + + + + L + + IS G+ Sbjct: 281 HIAGFVVEQGRALVIGVNKWDGLDE--HARERAKADLTRKLKFLDFAKSHFISAAKKTGI 338 Query: 365 DDLMVSVLEINKLWKTRITTSYLN-SWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 LM SV + ++ T L + ++ + Q P R +L+Y Q +PP Sbjct: 339 GALMRSVDDAYAAAMAKLPTPKLTRALIEAVEFQQPRRRGPVR-PKLRYAHQGGQNPPII 397 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +I + + E+YKRYL NR R FSL+G P+R+ F+SS NPY K Sbjct: 398 VIHGNALDAVTETYKRYLENRFRETFSLTGTPLRIEFRSSTNPYADK 444 >gi|206560243|ref|YP_002231007.1| GTP-binding protein EngA [Burkholderia cenocepacia J2315] gi|238693091|sp|B4EAW5|DER_BURCJ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|198036284|emb|CAR52180.1| GTP-binding protein EngA [Burkholderia cenocepacia J2315] Length = 445 Score = 257 bits (656), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 161/469 (34%), Positives = 245/469 (52%), Gaps = 32/469 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+ + + +VDT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGERPYLVVDTGGFEPVA 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I +M QT A+ EA +++F++D + G+ P D +I +LRK PI +V NK + Sbjct: 65 KDGILHEMARQTRQAVEEADVVVFIVDGRNGLAPQDKSIADYLRKTGRPIFLVVNKAEGM 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + Y L + ISA H G +++ I + + Y P E E++ Sbjct: 125 KYTAVATDFYELGLGDPRAISAAHGDGVTDM---INEALEVAYAGQPEEAEEDDP----- 176 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 S+ ++IA+VGRPNVGKSTL+N L+G +R++ G TRDS+ + Sbjct: 177 ----------------SRGIKIAIVGRPNVGKSTLVNALIGEDRVIAFDMPGTTRDSIYV 220 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + DTAG+R+ ++ E++E+ +V K++QS+ I+LLDA QD Sbjct: 221 DFERNGKKYTLIDTAGLRRRGKVFEAIEKFSVVKTLQSISDANVVILLLDAQQDISDQDA 280 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSD--KLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 I V G A+V+ +NKWD D + DL T+ +K L +I+ + +TG Sbjct: 281 HIAGFVVEQGRALVIGVNKWDGFDDHARDRAKADL-TRKLKFLDFAKSHFISA-AKKTGI 338 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWL-QKTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 G LM SV + +++ T L L + + Q P R +L+Y Q +PP Sbjct: 339 GA--LMRSVDDAYAAAMSKLPTPKLTRALIEAVEFQQPRRRGPVR-PKLRYAHQGGQNPP 395 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +I + + E+YKRYL NR R FSL+G P+R+ F+SS NPY K Sbjct: 396 IIVIHGNALDAVTETYKRYLENRFRETFSLTGTPLRIEFRSSNNPYADK 444 >gi|167772322|ref|ZP_02444375.1| hypothetical protein ANACOL_03699 [Anaerotruncus colihominis DSM 17241] gi|167665425|gb|EDS09555.1| hypothetical protein ANACOL_03699 [Anaerotruncus colihominis DSM 17241] Length = 442 Score = 257 bits (656), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 150/456 (32%), Positives = 236/456 (51%), Gaps = 31/456 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTLFN+L ++++V + PG+TRDR+Y + +VDT GI Sbjct: 6 IAIVGRPNVGKSTLFNKLAGARISIVEDTPGVTRDRVYYECEWRAKTVMLVDTGGIEPYS 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I QM Q +LAI+ A +I+ + D ++G+T D + L+K P+++ NK D R Sbjct: 66 TDKILSQMRRQAQLAIDSADVIILVTDIQSGVTATDQDVAVMLQKSGKPVVLAVNKCD-R 124 Query: 125 IAQ--RNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 + +FYE Y+L + + +S+ H GT +L + I+ N+ +E Sbjct: 125 LGDVPPDFYEFYNLGLGDPIAVSSVHGHGTGDLLDACYA------------HIDFNRADE 172 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 G+ VK +AV+G+PNVGKS+L+NR+ G R + +G TRD+V Sbjct: 173 ---------YGEEYVK-------VAVIGKPNVGKSSLVNRVAGEERSIVSDMAGTTRDAV 216 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + DTAG+R+ SR+ E +E+ +V ++ +V + ++++DAT+ F +Q Sbjct: 217 DTVVENEYGRFVFIDTAGIRRKSRVEEQIERYSVLRAYMAVDRSDVCVIMIDATVGFTEQ 276 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D +I G ++A+NKWD + +Q R K + + I IS TG+ Sbjct: 277 DSKIAGYAHERGKGCIVAVNKWDAIEKDGKTMQTFRKKLETDFSFMSYAPILFISAMTGQ 336 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 +D L + +N RI+T LN L + PPT + R+ + TQ + PP+ Sbjct: 337 RIDKLFEQIQYVNSQNAMRISTGRLNDMLSVATARVQPPTDKGKRLRIYFCTQAATRPPT 396 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 F+ FC SY+RYL N++R F LSG PIR+ Sbjct: 397 FVFFCNNSELFHFSYQRYLENQIRETFGLSGTPIRI 432 >gi|227833144|ref|YP_002834851.1| cytidylate kinase [Corynebacterium aurimucosum ATCC 700975] gi|227454160|gb|ACP32913.1| cytidylate kinase [Corynebacterium aurimucosum ATCC 700975] Length = 528 Score = 257 bits (656), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 149/462 (32%), Positives = 247/462 (53%), Gaps = 40/462 (8%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI- 60 + T+A+VG PNVGKS+L NR + ++ AVV +HPG+TRDR+ A NG F + DT G Sbjct: 93 LCTVAVVGRPNVGKSSLVNRFLGRREAVVEDHPGVTRDRVSYVADWNGQRFFVQDTGGWD 152 Query: 61 --ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVS 118 G + +IA+Q E A++ A +I+F++D+K GIT D + L++ +P+I+VS Sbjct: 153 PNVKGIHAAIARQ----AEQAMDTADVIVFVVDTKVGITETDAVMARKLQRSEVPVILVS 208 Query: 119 NKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 NK D+ + E Y+L + +SA+H G +++ I ++F ++ P H Sbjct: 209 NKFDSETMYADMAEFYALGLGDPWPVSAQHGRGGADVLDEILRLFPEE-PRH-------- 259 Query: 179 KRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 SS+ S P R+A+VG+PNVGKS+L+N+L R + + +G T Sbjct: 260 ----------------SSI--TSGPRRVALVGKPNVGKSSLLNKLTAEERSVVDNAAGTT 301 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 D V + DTAG+RK + + E ++ + E I+L+DA+ Sbjct: 302 VDPVDSLVQLDQRLWKFIDTAGLRKKVKNAQGHEYYASLRTRGVIDAAEVCIMLIDASQE 361 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMV-SDKLNLLQDLRTKAIKNLPQIGDIYINTIS 357 +QD R+++ + G A+V+A NKWD+V D+ L+ + +++LP + + I+ + Sbjct: 362 VSEQDQRVLNMILEAGKALVIAFNKWDLVDEDRRYYLEREIDENLRHLPWVTRVNISAET 421 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 GR + L+ M+ LE W R++T LN+W+++ NPPP NR R+ + TQ Sbjct: 422 GRALQKLEPAMIEALES---WDQRVSTGQLNNWMREAIAANPPPMNNNRLPRVLFATQAS 478 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 + PP+ ++F T + Y+RYL + R F G P+R+ Sbjct: 479 TQPPTIVLFTT--GFLDAGYRRYLERKFRERFGFHGSPVRIA 518 >gi|300854433|ref|YP_003779417.1| putative GTP-binding protein [Clostridium ljungdahlii DSM 13528] gi|300434548|gb|ADK14315.1| putative GTP-binding protein [Clostridium ljungdahlii DSM 13528] Length = 438 Score = 257 bits (656), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 143/463 (30%), Positives = 243/463 (52%), Gaps = 34/463 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFN+L K++++V + PG+TRDR+Y +A F I+DT GI Sbjct: 6 VAIVGRPNVGKSTLFNKLAGKRISIVEDTPGVTRDRVYAEAEWLKYNFTIIDTGGIEPES 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I QM Q ++A+ A I+F++D K G+T D + LRK P+++V NK+D Sbjct: 66 TDVIISQMRRQAQVAVETADTIIFIVDGKEGVTAADREVAQMLRKSKKPVVLVVNKIDNI 125 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 YE Y+L E + ISA LG ++ + + FK Sbjct: 126 NQNAYVYEFYNLGIGEPMAISASQALGLGDMLDKVVENFKD------------------- 166 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 S+ +++A +G+PNVGKS+LIN+LLG R++ G TRD+V Sbjct: 167 ---------DEDDDIDSEYIKVAFIGKPNVGKSSLINKLLGEERVIVSDIPGTTRDAVDS 217 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + DTAG+RK S++ E +E+ +V ++ ++ + +++LDA +QD Sbjct: 218 YLETDYGKLLLIDTAGLRKKSKVKEEIERYSVIRTYTAIERADVCVLILDAVHNISEQDE 277 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTK---AIKNLPQIGDIYINTISGRTG 361 +I+ ++++ +NKWD++ + +T+ ++ +P ++ IS +TG Sbjct: 278 KIIGYAHELSKSIMVIINKWDLIDKDTKTVDKYKTEIGTSLSFMPYAPYLF---ISAKTG 334 Query: 362 EGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 + ++ ++ + E + RI T LN + K + PP I + ++ Y+TQI + PP Sbjct: 335 QRVNKVLQLIKECYDNYCKRIKTGVLNDIISKAVMMKEPPVILGKRLKIYYVTQIGNKPP 394 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 +F+ F P+ + SY+RY+ N+LR NF +G I++ F+ K Sbjct: 395 TFVFFVNDPSCVHFSYRRYIENQLRDNFDFTGTGIKLEFRERK 437 >gi|254252261|ref|ZP_04945579.1| Small GTP-binding protein domain [Burkholderia dolosa AUO158] gi|124894870|gb|EAY68750.1| Small GTP-binding protein domain [Burkholderia dolosa AUO158] Length = 445 Score = 256 bits (655), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 155/467 (33%), Positives = 241/467 (51%), Gaps = 28/467 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+ + + +VDT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGARPYLVVDTGGFEPVA 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I +M QT A+ EA +++F++D + G+ P D +I +LRK PI +V NK + Sbjct: 65 KDGILHEMARQTRQAVEEADVVVFIVDGRNGLAPQDKSIADYLRKTGRPIFLVVNKAEGM 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + Y L + ISA H G +++ I + + Y + P E +N+ Sbjct: 125 KYTAVATDFYELGLGDPRAISAAHGDGVTDM---INEALEVAYADQPEEEDDNDP----- 176 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 S+ ++IA+VGRPNVGKSTL+N L+G +R++ G TRDS+ + Sbjct: 177 ----------------SRGVKIAIVGRPNVGKSTLVNALIGEDRVIAFDMPGTTRDSIYV 220 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + DTAG+R+ ++ E++E+ +V K++QS+ I+LLDA QD Sbjct: 221 DFERNGKKYTLIDTAGLRRRGKVFEAIEKFSVVKTLQSIADANVVILLLDAQQDISDQDA 280 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 I V G A+V+ +NKWD + + + + + + L + + IS G+ Sbjct: 281 HIAGFVVEQGRALVIGVNKWDGLDE--HARERAKADLTRKLKFLDFAKSHFISAAKKTGI 338 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWL-QKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 LM SV + ++ T L L + + Q P R +L+Y Q +PP Sbjct: 339 GALMRSVDDAYAAAMAKLPTPKLTRALIEAVEFQQPRRRGPVR-PKLRYAHQGGQNPPII 397 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +I + + E+YKRYL NR R FSL+G P+R+ F+SS NPY K Sbjct: 398 VIHGNALDAVTETYKRYLENRFRETFSLTGTPLRIEFRSSNNPYADK 444 >gi|42780705|ref|NP_977952.1| GTP-binding protein EngA [Bacillus cereus ATCC 10987] gi|81831124|sp|Q73AZ1|DER_BACC1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|42736625|gb|AAS40560.1| GTPase family protein [Bacillus cereus ATCC 10987] Length = 436 Score = 256 bits (655), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 148/458 (32%), Positives = 243/458 (53%), Gaps = 29/458 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKST+FNR+V +++++V + PG+TRDR+Y FNI+DT GI G Sbjct: 6 IAIVGRPNVGKSTIFNRIVGERVSIVEDIPGVTRDRIYSAGEWLNHEFNIIDTGGIDIGD 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + Q+ Q E+AI+EA +I+F+ + + G+T D + L + N P+++ NK+D Sbjct: 66 EPFLT-QIRQQAEVAIDEADVIIFMTNGRDGVTAADEEVAKILYRSNKPVVLAVNKVDNP 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + Y+ Y+L F E IS H LG +L Q +P IE + +E++ Sbjct: 125 EMRSDIYDFYALGFGEPFPISGTHGLGLGDL----LDEAAQHFPK-----IEEDGYDEDT 175 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 +R +++GRPNVGKS+L+N LLG R++ + +G TRD+V Sbjct: 176 -------------------IRFSLIGRPNVGKSSLVNALLGQERVIVSNVAGTTRDAVDT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 ++ I DTAGMRK ++ ES E+ +V ++++++ + +V+LD +QD Sbjct: 217 PYSKDGKDYVIIDTAGMRKKGKVYESTEKYSVLRALRAIERSDVVLVVLDGEEGIIEQDK 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 +I ++G AVV+ +NKWD V ++ + + I +S +T + Sbjct: 277 KIAGYAHDSGRAVVIVVNKWDAVKKDEKTMKAFEENIRAHFQFLDYAPIVFLSAKTRKRT 336 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 L+ + E+N+ RI T+ LN + NP PT ++ Y TQ+ PP+F+ Sbjct: 337 QTLIPVIDEVNESHSIRIQTNVLNDVIMDAVAMNPTPTHNGSRLKIFYATQVAVKPPTFV 396 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 +F P + SY+R+L NRLR +F G PI + ++ Sbjct: 397 VFVNDPELLHFSYERFLKNRLRESFGFVGTPIHIIARA 434 >gi|325524779|gb|EGD02753.1| GTP-binding protein Der [Burkholderia sp. TJI49] Length = 445 Score = 256 bits (655), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 156/467 (33%), Positives = 240/467 (51%), Gaps = 28/467 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+ + + +VDT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGERPYLVVDTGGFEPVA 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I +M QT A+ EA +++F++D + G+ P D I +LRK PI +V NK + Sbjct: 65 KDGILHEMARQTRQAVEEADVVVFIVDGRNGLAPQDKTIADYLRKTGRPIFLVVNKAEGM 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + Y L + ISA H G +++ I + + Y + P E EN+ Sbjct: 125 KYTAVATDFYELGLGDPRAISAAHGDGVTDM---INEALEVAYADQPEEEDENDP----- 176 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 S+ ++IA+VGRPNVGKSTL+N L+G +R++ G TRDS+ + Sbjct: 177 ----------------SRGIKIAIVGRPNVGKSTLVNALIGEDRVIAFDMPGTTRDSIYV 220 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + DTAG+R+ ++ E++E+ +V K++QS+ I+LLDA QD Sbjct: 221 DFERNGKKYTLIDTAGLRRRGKVFEAIEKFSVVKTLQSISDANVVILLLDAQQDISDQDA 280 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 I V G A+V+ +NKWD + + + + + + L + + IS G+ Sbjct: 281 HIAGFVVEQGRALVIGVNKWDGLDE--HARERAKADLTRKLKFLDFAKSHFISAAKKTGI 338 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWL-QKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 LM SV + ++ T L L + + Q P R +L+Y Q +PP Sbjct: 339 GALMRSVDDAYAAAMAKLPTPKLTRALIEAVEFQQPRRRGPVR-PKLRYAHQGGQNPPII 397 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +I + + E+YKRYL NR R FSL+G P+R+ F+SS NPY K Sbjct: 398 VIHGNALDAVTETYKRYLENRFRETFSLTGTPLRIEFRSSNNPYADK 444 >gi|330752119|emb|CBL87080.1| GTP-binding protein [uncultured Flavobacteria bacterium] Length = 434 Score = 256 bits (655), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 150/465 (32%), Positives = 243/465 (52%), Gaps = 37/465 (7%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +AIVG PNVGKST FNR+++K+ A+V G+TRDR YG+ NG F+++DT G Sbjct: 1 MSAIVAIVGRPNVGKSTFFNRMIQKREAIVDAVSGVTRDRHYGKTDWNGRDFSLIDTGGY 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 G + K+++ Q ELAI EA I+F+++ + G+T D + LR+ P+ + NK Sbjct: 61 VVGSDDVFEKEIDKQVELAIEEADAIIFMVEVETGVTGMDEEVAHLLRRSRKPVFLAVNK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D + Q E YSL F ++ IS + G+ EL + K E IE+N Sbjct: 121 VDNAMRQDGAVEFYSLGFDKVYPISGNNGGGSGELLDDLVKALP--------EEIESN-- 170 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 + + P R AVVGRPN GKS+ IN L+G +R + +G TRD Sbjct: 171 DADVP-------------------RFAVVGRPNAGKSSFINSLIGEDRYIVTDIAGTTRD 211 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ +N + DTAG+R+ +++ E +E +V +S++++ C+ I+++DAT F+ Sbjct: 212 SIDTRYNRFGFEFNLIDTAGIRRKAKVKEDIEFYSVMRSVRAIEHCDVCILVVDATRGFD 271 Query: 301 KQDLRIVDSVFNTGH----AVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTI 356 Q V ++F H +V+ +NKWD+V + K D+ I + Sbjct: 272 GQ----VQNIFWLAHRNNKGIVILVNKWDLVEKDHKTTKAFEEKIRAETAPFVDVPIVFV 327 Query: 357 SGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQI 416 S + + + + + +++ K R+ T LN L Q PPP ++ ++K+ TQ+ Sbjct: 328 SSISKQRIFKAIETAVDVFKNRSNRVPTRKLNDILLPVIEQKPPPAYKGKHVKIKFCTQL 387 Query: 417 QSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 ++ P F FC P + E YKR+L N++R F +GIPI + F+ Sbjct: 388 PTAHPQFAFFCNLPQYVKEPYKRFLENQMREIFDFNGIPITLFFR 432 >gi|311105363|ref|YP_003978216.1| GTP-binding protein EngA [Achromobacter xylosoxidans A8] gi|310760052|gb|ADP15501.1| GTP-binding protein EngA [Achromobacter xylosoxidans A8] Length = 450 Score = 256 bits (655), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 149/467 (31%), Positives = 240/467 (51%), Gaps = 25/467 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTLFNRL + + A+V ++ G+TRDR YG+ + + F ++DT G Sbjct: 7 VALVGRPNVGKSTLFNRLTRSRAALVADYSGLTRDRHYGEGRVGEIPFIVIDTGGFEPVA 66 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIP-IIIVSNKMDT 123 I +M QT AI EA +++FL+D++AGI +DH I LRK +++ NK + Sbjct: 67 KDGILLEMARQTRQAIAEADVVVFLVDARAGINAHDHEIAQLLRKSGQQRVLLAVNKAEG 126 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 A E + L + ISA H G +L + + + + Sbjct: 127 MGAGSAISEFHELGLGQPYPISAAHGDGIVDLIELALQDLAEPPAEEESPEEGEHDHR-- 184 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 +++A+VGRPNVGKSTLIN L+G R++ G TRD++ Sbjct: 185 --------------------IKLAIVGRPNVGKSTLINTLMGEERVIAFDMPGTTRDAIE 224 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 I + + DTAG+RK ++ E++E+ +V K++Q++ +++LDA +QD Sbjct: 225 IDFERDGRRYTLIDTAGLRKRGKVFEAVEKFSVIKTLQAIEASNVVLLMLDAQTEISEQD 284 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 I V TG AVV+A+NKWD + + + + + + L + ++TIS G+G Sbjct: 285 AHIAGFVLETGRAVVVAINKWDGLDGEAK--ERIEREFQRKLRFLSFARMHTISALRGQG 342 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 + L+ S+ + +++T L LQ Q PP +++Y Q +PP Sbjct: 343 VKPLLKSINAAHAAAFAKLSTPKLTRELQTAVEQQQPPRKGIFRPKMRYAHQGGQNPPLV 402 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +I + IP+SY+RYL R R F L+G P+R+ F+SS NPY ++ Sbjct: 403 VIHGNALDAIPDSYRRYLETRFRNAFDLAGTPLRIEFKSSHNPYAQE 449 >gi|300726752|ref|ZP_07060182.1| ribosome-associated GTPase EngA [Prevotella bryantii B14] gi|299775865|gb|EFI72445.1| ribosome-associated GTPase EngA [Prevotella bryantii B14] Length = 437 Score = 256 bits (655), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 157/458 (34%), Positives = 245/458 (53%), Gaps = 30/458 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +AIVG PNVGKSTLFNR + + A+V + G TRDR YG+ NG F++VDT G Sbjct: 1 MANLVAIVGRPNVGKSTLFNRFTQSRRAIVSDTAGTTRDRQYGKVSWNGKDFSVVDTGGW 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + + Q +A EA L+LFL+D++ G+T +D + LR+ +PII+V+NK Sbjct: 61 VVKSDDIFEDAIRRQVLVATEEADLVLFLVDTETGVTDWDVDVAKILRRAKLPIILVANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D E Y L + V ISA GT +L +I +K PN P E IE Sbjct: 121 VDNSGEYYEAAEFYKLGLGDPVCISAATGGGTGDLLDMIL----EKMPNSPEETIE---- 172 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 E+ P R AVVGRPN GKS++IN +G +R + +G TRD Sbjct: 173 -EDIP-------------------RFAVVGRPNAGKSSIINAFIGEDRNIVTEIAGTTRD 212 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ ++ + DTAG+R+ +++TE LE +V +S++++ + I++LDAT E Sbjct: 213 SIYTKYDKFGFDFYLVDTAGIRRKNKVTEDLEFYSVMRSIRAIENSDVCILMLDATRGIE 272 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAI-KNLPQIGDIYINTISGR 359 QD+ I + ++V+ +NKWD+V +K + D AI K + D I S Sbjct: 273 AQDMNIFQLIQRNNKSLVVVVNKWDLVEEKSQKVIDTFENAIRKRMAPFVDFPIIFASAL 332 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 T + + ++ + ++ + K I TS LN + PP +I +Y ++KY TQ+ ++ Sbjct: 333 TKQRIFRVLETAKDVYQNRKIHIGTSKLNEVMLPIIEATPPQSIKGKYIKIKYCTQLPNT 392 Query: 420 P-PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 PSF+ + P + E+Y+R+L N++R N++L G PI Sbjct: 393 QIPSFVFYANLPQYVKENYRRFLENKIRENWNLHGCPI 430 >gi|149277444|ref|ZP_01883585.1| GTP-binding protein EngA [Pedobacter sp. BAL39] gi|149231677|gb|EDM37055.1| GTP-binding protein EngA [Pedobacter sp. BAL39] Length = 433 Score = 256 bits (655), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 152/457 (33%), Positives = 232/457 (50%), Gaps = 30/457 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTLFNRL + + A+V + G+TRDR YG A F ++DT G Sbjct: 5 IAIVGRPNVGKSTLFNRLTESRKAIVDDFSGVTRDRHYGSAEWTDKQFTVIDTGGYVANS 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +Q +AI EA ++LF++D GIT D I LR+ P+ IV NK+D Sbjct: 65 EDVFEAAIREQVVIAIEEATVLLFMVDVVTGITDLDDDIAQLLRRSKKPVFIVVNKVDNT 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 Q + Y EI IS+ GT +L + K F E+ Sbjct: 125 QLQNDASVFYGFGLGEIYPISSMTGSGTGDLLDEVIKHF------------------EDI 166 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P+E + +I +VGRPNVGKS+LIN L+G R + +G TRDS+ I Sbjct: 167 PEEE------------NALPKITIVGRPNVGKSSLINALIGKERNIVTPIAGTTRDSIHI 214 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 +N H DTAG+RK +++ E++E +V ++++++ + ++++DA E QD+ Sbjct: 215 HYNQFGHEFMFIDTAGLRKKTKVKENIEFYSVMRTIKALEEADVVVLMIDAMEGLESQDV 274 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 I +V+ +NKWD+V ++ + + L D+ I S + + Sbjct: 275 NIFHLAEKNKKGIVILVNKWDLVEKDSKTIKIFEDQIRQKLQPFTDVPIIFTSVLNKQRI 334 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 + + LE+ K ++ TS LN + PPP + +Y ++KYITQI S P F Sbjct: 335 FQAIETSLEVFKNRGKKVPTSKLNDVMLPIIENYPPPALKGKYIKIKYITQINGSSPMFA 394 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 FC P I E YKR++ N+LR +F SG+PI++ F+ Sbjct: 395 FFCNLPQYIKEPYKRFIENKLREHFDFSGVPIQIYFR 431 >gi|314933657|ref|ZP_07841022.1| ribosome-associated GTPase EngA [Staphylococcus caprae C87] gi|313653807|gb|EFS17564.1| ribosome-associated GTPase EngA [Staphylococcus caprae C87] Length = 436 Score = 256 bits (655), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 147/456 (32%), Positives = 241/456 (52%), Gaps = 31/456 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST+FNR+V +++++V + PG+TRDR+Y FNI+DT GI G Sbjct: 6 VAIVGKPNVGKSTIFNRVVGERVSIVEDTPGVTRDRIYSSGEWLTHEFNIIDTGGIEIG- 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + Q+ Q E+AI+EA +I+F+++ + G+T D + L K P+++ NK+D Sbjct: 65 DAPFQTQIRAQAEIAIDEADVIIFMVNVREGLTQSDEMVAQMLYKSKKPVVLAVNKVDNP 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + Y+ YSL F + IS H LG +L + +EN E Sbjct: 125 EMRNDIYDFYSLGFGDPYPISGSHGLGLGDLLDAV---------------VENFGEETED 169 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P + T +R++++GRPNVGKS+L+N +LG R++ + +G TRD+V Sbjct: 170 PYDEDT-------------IRLSIIGRPNVGKSSLVNAILGEERVIVSNVAGTTRDAVDT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 ++++ + DTAGMRK ++ ES E+ +V ++++++ +V++DA +QD Sbjct: 217 EYSYEGQDYVLIDTAGMRKKGKVYESTEKYSVLRALKAIERSNVVLVVIDAEQGIIEQDK 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGD-IYINTISGRTGEG 363 R+ G A+V+ +NKWD V ++ T+ ++N Q D I +S + Sbjct: 277 RVAGYAHEEGKAIVIVVNKWDTVEKDSKTMKKF-TEDVRNEFQFLDYAQIAFVSAKESLR 335 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 L L + E ++ K R+ +S LN + NP PT R + Y TQ+ PP+F Sbjct: 336 LRTLFPYITEASENHKKRVQSSTLNEVVTDAISMNPTPTDKGRRLNVFYTTQVAIEPPTF 395 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 ++F + SYKRYL N++R F G PI + Sbjct: 396 VVFVNDVELMHFSYKRYLENQIRNAFGFEGTPIHII 431 >gi|319943736|ref|ZP_08018017.1| GTP-binding protein EngA [Lautropia mirabilis ATCC 51599] gi|319742969|gb|EFV95375.1| GTP-binding protein EngA [Lautropia mirabilis ATCC 51599] Length = 504 Score = 256 bits (654), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 153/504 (30%), Positives = 255/504 (50%), Gaps = 41/504 (8%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + IA+VG PNVGKSTLFNRL + + A+V N PG+TRDR YG A ++G ++DT G Sbjct: 5 VPVIALVGRPNVGKSTLFNRLTRSRDALVANIPGLTRDRHYGSATLDGQRVVLIDTGGFE 64 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 +A+QM QT A+ EA +++F++D + G+ D I LR+ +++ NK Sbjct: 65 PVAATGVAEQMARQTRQAVIEADVVVFVVDGRQGLLARDEEIAQELRRTARKVVLAVNKC 124 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPN------------ 169 + E ++L + ISA H G L + ++ + Sbjct: 125 EGISRPVAAAEFHALGLGVPMPISATHGDGVHALMEECLEDWRAERERLLAEAAEADAGM 184 Query: 170 ------HPLEMIENNKRNEESPKENITSEGKSSV-------------KNISKPLRIAVVG 210 ++ + E+ ++ + GK + + KP+R+AVVG Sbjct: 185 ADEAEGPADAAADDAGAHGEADQDGRPANGKRAGEAAEGAAGKGDAEADERKPVRVAVVG 244 Query: 211 RPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITES 270 RPN GKSTLIN LLG RL+ +Q G TRDS+++ + ++N ++ DTAG+R+ ++ E+ Sbjct: 245 RPNGGKSTLINALLGEERLIAFNQPGTTRDSITVDFRYRNRDYQLIDTAGLRRRGKVHET 304 Query: 271 LEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMV--S 328 +E+ +V K++Q++ C ++++DA +QD I + G A+V+ALNKWD V Sbjct: 305 VEKFSVVKTLQAIEDCNVAVLMIDAADGISEQDSAIAGYILEAGRALVIALNKWDAVPAD 364 Query: 329 DKLNLLQDLRTKA--IKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSY 386 ++ N+LQ+ + + + P + TIS LD LM +V E +++T Sbjct: 365 ERRNVLQECQRRLYFLDWAPML------TISALKNRALDKLMKAVDEARAAATRKLSTPK 418 Query: 387 LNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLR 446 L L L PP +L+Y Q +PP ++ + +K+ +SY+R+L R Sbjct: 419 LTRMLHAAVLHQQPPRNGPFRPKLRYAHQGGQNPPVIVVHGSSLDKVGDSYRRFLEGWFR 478 Query: 447 INFSLSGIPIRMCFQSSKNPYIKK 470 +L G P+R+ F++ NPY + Sbjct: 479 ERLALQGTPLRIEFRTGANPYANR 502 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 57/184 (30%), Positives = 83/184 (45%), Gaps = 12/184 (6%) Query: 199 NISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDT 258 N S P+ IA+VGRPNVGKSTL NRL L + G+TRD S + + DT Sbjct: 2 NPSVPV-IALVGRPNVGKSTLFNRLTRSRDALVANIPGLTRDRHYGSATLDGQRVVLIDT 60 Query: 259 AGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVV 318 G +P T EQ +++ Q+V + + ++D +D I + T VV Sbjct: 61 GGF-EPVAATGVAEQ-MARQTRQAVIEADVVVFVVDGRQGLLARDEEIAQELRRTARKVV 118 Query: 319 LALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLW 378 LA+NK + +S R A +G IS G+G+ LM LE + Sbjct: 119 LAVNKCEGIS---------RPVAAAEFHALGLGVPMPISATHGDGVHALMEECLEDWRAE 169 Query: 379 KTRI 382 + R+ Sbjct: 170 RERL 173 >gi|289449698|ref|YP_003474787.1| ribosome-associated GTPase EngA [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184245|gb|ADC90670.1| ribosome-associated GTPase EngA [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 441 Score = 256 bits (654), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 150/465 (32%), Positives = 244/465 (52%), Gaps = 37/465 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKST FN L +++++V + PG+TRDR+Y + G F+++DT GI Sbjct: 6 VAVVGRPNVGKSTFFNFLAGERISIVDDTPGVTRDRIYAEVEWLGRKFSLIDTGGIEPRT 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD-T 123 + + +QM Q ELAI A +ILF++D KAG+ D I + LRK P+I+ NK D Sbjct: 66 DDVLLQQMRIQAELAIETADVILFMVDLKAGLHAADADIANMLRKTKKPVILAVNKCDHV 125 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 YE Y+L + ISA H LG EL I + + + P N R Sbjct: 126 GDTPPEAYEFYNLGLGDFFPISAVHGLGMGELLDAIVENLPEPETDDPA-----NHR--- 177 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 ++I ++G+PN GKS+L NRLLG NR + S SG TRDS+ Sbjct: 178 --------------------VKICLIGKPNAGKSSLTNRLLGQNRSIVSSISGTTRDSLD 217 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + + DTAG+RK SRI + +E+ ++ +++ ++ + ++L+DA +QD Sbjct: 218 TPLTNEFGNYVLIDTAGLRKKSRIDDQVERYSMIRALAAIERSDVCLILIDAIDGITEQD 277 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKN----LPQIGDIYINTISGR 359 ++ N G A + +NKWD+V+ + +++ T++I+ +P ++++ + Sbjct: 278 TKVAGYAHNAGKASIFVVNKWDIVNKETGTMEEY-TRSIRERFSYMPYAQVLFLSAL--- 333 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 TG D + V + + ++TT LN ++ + Q P P R +++Y TQ+ Sbjct: 334 TGARCDKVFPMVNHVYEQACRKLTTGVLNDFIAEIQAMVPAPQDKGRRLKIRYATQVGIC 393 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 PP F++FC + SY+RY+ NRLR NF G P+R +S + Sbjct: 394 PPEFVLFCNDKELMHFSYERYIENRLRQNFGFDGTPVRFILRSRE 438 >gi|330504675|ref|YP_004381544.1| GTP-binding protein EngA [Pseudomonas mendocina NK-01] gi|328918961|gb|AEB59792.1| GTP-binding protein EngA [Pseudomonas mendocina NK-01] Length = 492 Score = 256 bits (654), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 158/467 (33%), Positives = 248/467 (53%), Gaps = 9/467 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ IA+VG PNVGKSTLFNRL + + A+VG+ G+TRDR YG+A G + ++DT GI Sbjct: 1 MVPVIALVGRPNVGKSTLFNRLTRSRDAIVGDLSGLTRDRQYGEAKWQGRTYIVIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + G I +M +Q+ AI EA +LFL+D++AG+T D I LR++N +V NK Sbjct: 61 S-GDEEGIDAKMAEQSLQAIEEADAVLFLVDARAGMTASDQMIGEHLRRRNKQSFLVVNK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D E + E + I+ H G +++ V+ F + E + Sbjct: 120 VDNLDVDLARAEFSPMGLGEPLAIAGAHGRGITQMLEVVLGAFPKDAGEPEEGAEEEEEV 179 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 E + I G S I ++A++GRPNVGKSTL+NR+LG R++ Q+G TRD Sbjct: 180 LEGQEAKRIP--GPSEKDGI----KLAIIGRPNVGKSTLVNRMLGEERVIVYDQAGTTRD 233 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ I + + + DTAG+R+ +I E++E+ +V K++Q+++ + ++DA Sbjct: 234 SIYIPFERDDEKYTLIDTAGVRRRGKIFEAVEKFSVVKTLQAIQDSNVVVFVMDAREGVV 293 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 DL ++ V +G A+V+ALNKWD + ++T+ + L + I+ IS Sbjct: 294 DHDLNLLGFVLESGRALVIALNKWDGMDQGQK--DYVKTELERRLFFVDFADIHFISALH 351 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G G+ L SV K TR TS L L+ + PP + R +L+Y ++P Sbjct: 352 GTGVGHLYKSVQASFKSAITRWPTSRLTQILEDAVSDHAPPLVNGRRIKLRYAHLGGANP 411 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 P +I + +P +Y RYL N R L G PIR+ ++ +NPY Sbjct: 412 PLIVIHGNQVDAVPRAYTRYLENTFRRVLKLVGTPIRIEYKGGENPY 458 >gi|229160554|ref|ZP_04288549.1| GTP-binding protein engA [Bacillus cereus R309803] gi|228622964|gb|EEK79795.1| GTP-binding protein engA [Bacillus cereus R309803] Length = 438 Score = 256 bits (654), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 148/458 (32%), Positives = 243/458 (53%), Gaps = 29/458 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKST+FNR+V +++++V + PG+TRDR+Y FNI+DT GI G Sbjct: 8 IAIVGRPNVGKSTIFNRIVGERVSIVEDIPGVTRDRIYSAGDWLNHEFNIIDTGGIDIGD 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + Q+ Q E+AI+EA +I+F+ + + G+T D + L + N P+++ NK+D Sbjct: 68 EPFLT-QIRQQAEVAIDEADVIIFMTNGRDGVTAADEEVAKILYRSNKPVVLAVNKVDNP 126 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + Y+ Y+L F E IS H LG +L Q +P IE + +E++ Sbjct: 127 EMRSDIYDFYALGFGEPFPISGTHGLGLGDL----LDEAAQHFPK-----IEEDGYDEDT 177 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 +R +++GRPNVGKS+L+N LLG R++ + +G TRD+V Sbjct: 178 -------------------IRFSLIGRPNVGKSSLVNALLGQERVIVSNVAGTTRDAVDT 218 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 ++ I DTAGMRK ++ ES E+ +V ++++++ + +V+LD +QD Sbjct: 219 PYSKDGKDYVIIDTAGMRKKGKVYESTEKYSVLRALRAIERSDVVLVVLDGEEGIIEQDK 278 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 +I ++G AVV+ +NKWD V ++ + + I +S +T + Sbjct: 279 KIAGYAHDSGRAVVIVVNKWDAVKKDEKTMKAFEENIRAHFQFLEYAPIVFLSAKTRKRT 338 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 L+ + E+N+ RI T+ LN + NP PT ++ Y TQ+ PP+F+ Sbjct: 339 QTLIPVIDEVNESHSIRIQTNVLNDVIMDAVAMNPTPTHNGSRLKIFYATQVAVKPPTFV 398 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 +F P + SY+R+L NRLR +F G PI + ++ Sbjct: 399 VFVNDPELLHFSYERFLKNRLRESFGFVGTPIHIIARA 436 >gi|73541770|ref|YP_296290.1| GTP-binding protein EngA [Ralstonia eutropha JMP134] gi|123732900|sp|Q46ZI7|DER_RALEJ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|72119183|gb|AAZ61446.1| Small GTP-binding protein domain:GTP-binding [Ralstonia eutropha JMP134] Length = 447 Score = 256 bits (654), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 154/470 (32%), Positives = 241/470 (51%), Gaps = 39/470 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTLFNR+ + + A+V + PG+TRDR YG+ I F +DT G Sbjct: 5 IALVGRPNVGKSTLFNRMTRSRDALVADLPGLTRDRHYGEGRIGDRPFIAIDTGGFEPVV 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I +M QT A+ EA +++F++D + G+ P D AI +LRK +++ NK + Sbjct: 65 KEGIVAEMAKQTRQAVVEADVVIFIVDGRLGLAPQDRAIADYLRKTGRRVMLAVNKAEGM 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + Y L + ISA H G EL ++ Q+ P E+ E + Sbjct: 125 KYTSVAADFYELGMGDPYAISAAHGDGVRELVDEALELAVQERP----ELAEEDA----- 175 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 + K ++IA+VGRPNVGKSTL+N L+G R++ G TRD++ + Sbjct: 176 --------------DSGKGVKIAIVGRPNVGKSTLVNTLIGEERVIAFDMPGTTRDAIYV 221 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + P + DTAG+R+ ++ E++E+ +V K++QS+ I+LLDA QD Sbjct: 222 EFERGGKPYTLIDTAGLRRRGKVFEAIEKFSVVKTLQSIADANVVILLLDAQQDISDQDA 281 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSD------KLNLLQDLRTKAIKNLPQIGDIYINTISG 358 I + +G A+V+ +NKWD + K +L + L+ + N + +S Sbjct: 282 HIAGFIVESGRALVVGVNKWDGLDGHTRDRIKHDLERKLQFLSFANF--------HFVSA 333 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKT-QLQNPPPTIFNRYNRLKYITQIQ 417 R G+ LM SV + ++ T L LQ+ + Q P +R +L+Y Q Sbjct: 334 RERTGIGALMRSVDDAYAAAMVKLPTPQLTRVLQEAVEFQQPKRAGVSR-PKLRYAHQGG 392 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 S+PP +I + + E+Y+RYL NR R F L G P+R+ F+++KNPY Sbjct: 393 SNPPIIVIHGNALSSVSETYRRYLENRYRAAFKLKGTPLRIEFRTNKNPY 442 >gi|297544868|ref|YP_003677170.1| ribosome-associated GTPase EngA [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842643|gb|ADH61159.1| ribosome-associated GTPase EngA [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 439 Score = 256 bits (654), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 149/455 (32%), Positives = 244/455 (53%), Gaps = 30/455 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 ++IVG PNVGKSTLFN+++ K++++V + PG+TRDR+ G A F +VDT G+ Sbjct: 6 VSIVGRPNVGKSTLFNKIMGKRISIVEDKPGVTRDRICGNAEWLNKKFILVDTGGLDPDA 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 I ++ Q E AI + +ILFL+D+K G+ P D I LR+ II+V NK+D Sbjct: 66 EDIIFSKVRLQVEAAIEASEVILFLVDAKEGLMPEDEEIADILRRAKKEIILVCNKVDNF 125 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + +Y+ +SL + ISA + LG EL I K K P LE E Sbjct: 126 KELPPTYYDFFSLGLGNPIPISASNGLGIGELLDEIVK----KLPQEGLEYSEET----- 176 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 ++IAV+GRPNVGKS+L+N++LG R++ G TRD++ Sbjct: 177 --------------------IKIAVIGRPNVGKSSLVNKILGEERVIVSDIPGTTRDAID 216 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 ++ + DTAG+R+ SRI+ES+E+ +V +++ ++ + ++++DA +QD Sbjct: 217 TPFSKDGKNYVLIDTAGIRRKSRISESIERYSVLRALTAIERSDICLLMIDAIEGPAEQD 276 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 +I F G +++ +NKWD + N + + + L I I IS +TG+ Sbjct: 277 TKIAGYAFENGKGIIIVVNKWDAIKKNNNTVNEYTKMIREKLSFISFAPILFISAKTGQR 336 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 + ++ +V ++ + RITT LN+ L + L PPP + ++ Y +Q+ PPSF Sbjct: 337 VHRVLQTVDKVWGEYNKRITTGLLNNVLNEAMLMFPPPADKGKQLKVYYTSQVGIKPPSF 396 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 ++F P + SY R++ N LR NF G+P+++ Sbjct: 397 VVFVNDPELMHFSYLRFMENTLRQNFGFEGVPLKI 431 >gi|30019652|ref|NP_831283.1| GTP-binding protein EngA [Bacillus cereus ATCC 14579] gi|30261599|ref|NP_843976.1| GTP-binding protein EngA [Bacillus anthracis str. Ames] gi|47526799|ref|YP_018148.1| GTP-binding protein EngA [Bacillus anthracis str. 'Ames Ancestor'] gi|47565966|ref|ZP_00237004.1| GTP-binding protein, Era/ThdF family [Bacillus cereus G9241] gi|49184431|ref|YP_027683.1| GTP-binding protein EngA [Bacillus anthracis str. Sterne] gi|49477254|ref|YP_035720.1| GTP-binding protein EngA [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52143844|ref|YP_082984.1| GTP-binding protein EngA [Bacillus cereus E33L] gi|65318869|ref|ZP_00391828.1| COG1160: Predicted GTPases [Bacillus anthracis str. A2012] gi|118477058|ref|YP_894209.1| GTP-binding protein EngA [Bacillus thuringiensis str. Al Hakam] gi|165869461|ref|ZP_02214120.1| GTPase family protein [Bacillus anthracis str. A0488] gi|167633435|ref|ZP_02391760.1| GTPase family protein [Bacillus anthracis str. A0442] gi|167639189|ref|ZP_02397462.1| GTPase family protein [Bacillus anthracis str. A0193] gi|170686176|ref|ZP_02877398.1| GTPase family protein [Bacillus anthracis str. A0465] gi|170706475|ref|ZP_02896935.1| GTPase family protein [Bacillus anthracis str. A0389] gi|177650444|ref|ZP_02933411.1| GTPase family protein [Bacillus anthracis str. A0174] gi|190568605|ref|ZP_03021510.1| ribosome-associated GTPase EngA [Bacillus anthracis Tsiankovskii-I] gi|196033560|ref|ZP_03100972.1| ribosome-associated GTPase EngA [Bacillus cereus W] gi|196038987|ref|ZP_03106294.1| ribosome-associated GTPase EngA [Bacillus cereus NVH0597-99] gi|196046647|ref|ZP_03113871.1| ribosome-associated GTPase EngA [Bacillus cereus 03BB108] gi|206970720|ref|ZP_03231672.1| ribosome-associated GTPase EngA [Bacillus cereus AH1134] gi|206974925|ref|ZP_03235840.1| ribosome-associated GTPase EngA [Bacillus cereus H3081.97] gi|217959081|ref|YP_002337629.1| GTP-binding protein EngA [Bacillus cereus AH187] gi|218231181|ref|YP_002366284.1| GTP-binding protein EngA [Bacillus cereus B4264] gi|218902715|ref|YP_002450549.1| ribosome-associated GTPase EngA [Bacillus cereus AH820] gi|222095233|ref|YP_002529293.1| gtp-binding protein enga [Bacillus cereus Q1] gi|225863467|ref|YP_002748845.1| ribosome-associated GTPase EngA [Bacillus cereus 03BB102] gi|227815649|ref|YP_002815658.1| ribosome-associated GTPase EngA [Bacillus anthracis str. CDC 684] gi|228914177|ref|ZP_04077795.1| GTP-binding protein engA [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228920314|ref|ZP_04083661.1| GTP-binding protein engA [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228926634|ref|ZP_04089703.1| GTP-binding protein engA [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228932889|ref|ZP_04095756.1| GTP-binding protein engA [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228945203|ref|ZP_04107559.1| GTP-binding protein engA [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228951980|ref|ZP_04114077.1| GTP-binding protein engA [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228957879|ref|ZP_04119619.1| GTP-binding protein engA [Bacillus thuringiensis serovar pakistani str. T13001] gi|228984682|ref|ZP_04144855.1| GTP-binding protein engA [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229043348|ref|ZP_04191066.1| GTP-binding protein engA [Bacillus cereus AH676] gi|229069156|ref|ZP_04202447.1| GTP-binding protein engA [Bacillus cereus F65185] gi|229078786|ref|ZP_04211339.1| GTP-binding protein engA [Bacillus cereus Rock4-2] gi|229090565|ref|ZP_04221800.1| GTP-binding protein engA [Bacillus cereus Rock3-42] gi|229109059|ref|ZP_04238659.1| GTP-binding protein engA [Bacillus cereus Rock1-15] gi|229121146|ref|ZP_04250383.1| GTP-binding protein engA [Bacillus cereus 95/8201] gi|229126917|ref|ZP_04255928.1| GTP-binding protein engA [Bacillus cereus BDRD-Cer4] gi|229138297|ref|ZP_04266892.1| GTP-binding protein engA [Bacillus cereus BDRD-ST26] gi|229144202|ref|ZP_04272616.1| GTP-binding protein engA [Bacillus cereus BDRD-ST24] gi|229149801|ref|ZP_04278030.1| GTP-binding protein engA [Bacillus cereus m1550] gi|229155169|ref|ZP_04283281.1| GTP-binding protein engA [Bacillus cereus ATCC 4342] gi|229178011|ref|ZP_04305383.1| GTP-binding protein engA [Bacillus cereus 172560W] gi|229183798|ref|ZP_04311015.1| GTP-binding protein engA [Bacillus cereus BGSC 6E1] gi|229189685|ref|ZP_04316699.1| GTP-binding protein engA [Bacillus cereus ATCC 10876] gi|229195804|ref|ZP_04322564.1| GTP-binding protein engA [Bacillus cereus m1293] gi|229602142|ref|YP_002866007.1| ribosome-associated GTPase EngA [Bacillus anthracis str. A0248] gi|254683091|ref|ZP_05146952.1| GTP-binding protein EngA [Bacillus anthracis str. CNEVA-9066] gi|254723679|ref|ZP_05185465.1| GTP-binding protein EngA [Bacillus anthracis str. A1055] gi|254734440|ref|ZP_05192152.1| GTP-binding protein EngA [Bacillus anthracis str. Western North America USA6153] gi|254740851|ref|ZP_05198539.1| GTP-binding protein EngA [Bacillus anthracis str. Kruger B] gi|254755089|ref|ZP_05207123.1| GTP-binding protein EngA [Bacillus anthracis str. Vollum] gi|254759626|ref|ZP_05211650.1| GTP-binding protein EngA [Bacillus anthracis str. Australia 94] gi|296502173|ref|YP_003663873.1| GTP-binding protein EngA [Bacillus thuringiensis BMB171] gi|300117468|ref|ZP_07055258.1| GTP-binding protein EngA [Bacillus cereus SJ1] gi|301053141|ref|YP_003791352.1| GTP-binding protein EngA [Bacillus anthracis CI] gi|37999522|sp|Q81FR5|DER_BACCR RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|37999526|sp|Q81SW9|DER_BACAN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|81824337|sp|Q63DM8|DER_BACCZ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|81828346|sp|Q6HL51|DER_BACHK RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|166224305|sp|A0RBV9|DER_BACAH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|226741128|sp|B7JGY9|DER_BACC0 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|226741130|sp|B7HHQ7|DER_BACC4 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|226741131|sp|B7HL14|DER_BACC7 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|254783135|sp|C3P591|DER_BACAA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|254783136|sp|C3L9F4|DER_BACAC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|254783137|sp|C1EN01|DER_BACC3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|254783138|sp|B9IVM6|DER_BACCQ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|29895196|gb|AAP08484.1| GTP-binding protein [Bacillus cereus ATCC 14579] gi|30255453|gb|AAP25462.1| ribosome-associated GTPase EngA [Bacillus anthracis str. Ames] gi|47501947|gb|AAT30623.1| GTPase family protein [Bacillus anthracis str. 'Ames Ancestor'] gi|47556883|gb|EAL15213.1| GTP-binding protein, Era/ThdF family [Bacillus cereus G9241] gi|49178358|gb|AAT53734.1| GTPase family protein [Bacillus anthracis str. Sterne] gi|49328810|gb|AAT59456.1| GTP-binding protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51977313|gb|AAU18863.1| GTP-binding protein [Bacillus cereus E33L] gi|118416283|gb|ABK84702.1| GTP-binding protein [Bacillus thuringiensis str. Al Hakam] gi|164714901|gb|EDR20419.1| GTPase family protein [Bacillus anthracis str. A0488] gi|167512979|gb|EDR88352.1| GTPase family protein [Bacillus anthracis str. A0193] gi|167531473|gb|EDR94151.1| GTPase family protein [Bacillus anthracis str. A0442] gi|170128573|gb|EDS97440.1| GTPase family protein [Bacillus anthracis str. A0389] gi|170669873|gb|EDT20614.1| GTPase family protein [Bacillus anthracis str. A0465] gi|172083588|gb|EDT68648.1| GTPase family protein [Bacillus anthracis str. A0174] gi|190560205|gb|EDV14185.1| ribosome-associated GTPase EngA [Bacillus anthracis Tsiankovskii-I] gi|195993994|gb|EDX57950.1| ribosome-associated GTPase EngA [Bacillus cereus W] gi|196022580|gb|EDX61263.1| ribosome-associated GTPase EngA [Bacillus cereus 03BB108] gi|196030132|gb|EDX68732.1| ribosome-associated GTPase EngA [Bacillus cereus NVH0597-99] gi|206734356|gb|EDZ51526.1| ribosome-associated GTPase EngA [Bacillus cereus AH1134] gi|206746944|gb|EDZ58336.1| ribosome-associated GTPase EngA [Bacillus cereus H3081.97] gi|217067748|gb|ACJ81998.1| ribosome-associated GTPase EngA [Bacillus cereus AH187] gi|218159138|gb|ACK59130.1| ribosome-associated GTPase EngA [Bacillus cereus B4264] gi|218536841|gb|ACK89239.1| ribosome-associated GTPase EngA [Bacillus cereus AH820] gi|221239291|gb|ACM12001.1| GTP-binding protein [Bacillus cereus Q1] gi|225788315|gb|ACO28532.1| ribosome-associated GTPase EngA [Bacillus cereus 03BB102] gi|227004060|gb|ACP13803.1| ribosome-associated GTPase EngA [Bacillus anthracis str. CDC 684] gi|228587701|gb|EEK45759.1| GTP-binding protein engA [Bacillus cereus m1293] gi|228593734|gb|EEK51539.1| GTP-binding protein engA [Bacillus cereus ATCC 10876] gi|228599647|gb|EEK57250.1| GTP-binding protein engA [Bacillus cereus BGSC 6E1] gi|228605499|gb|EEK62948.1| GTP-binding protein engA [Bacillus cereus 172560W] gi|228628296|gb|EEK85011.1| GTP-binding protein engA [Bacillus cereus ATCC 4342] gi|228633665|gb|EEK90265.1| GTP-binding protein engA [Bacillus cereus m1550] gi|228639210|gb|EEK95626.1| GTP-binding protein engA [Bacillus cereus BDRD-ST24] gi|228645189|gb|EEL01426.1| GTP-binding protein engA [Bacillus cereus BDRD-ST26] gi|228656517|gb|EEL12344.1| GTP-binding protein engA [Bacillus cereus BDRD-Cer4] gi|228662265|gb|EEL17868.1| GTP-binding protein engA [Bacillus cereus 95/8201] gi|228674337|gb|EEL29581.1| GTP-binding protein engA [Bacillus cereus Rock1-15] gi|228692768|gb|EEL46492.1| GTP-binding protein engA [Bacillus cereus Rock3-42] gi|228704468|gb|EEL56901.1| GTP-binding protein engA [Bacillus cereus Rock4-2] gi|228713908|gb|EEL65792.1| GTP-binding protein engA [Bacillus cereus F65185] gi|228725996|gb|EEL77235.1| GTP-binding protein engA [Bacillus cereus AH676] gi|228775076|gb|EEM23469.1| GTP-binding protein engA [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228801795|gb|EEM48672.1| GTP-binding protein engA [Bacillus thuringiensis serovar pakistani str. T13001] gi|228807705|gb|EEM54227.1| GTP-binding protein engA [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228814438|gb|EEM60703.1| GTP-binding protein engA [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228826810|gb|EEM72577.1| GTP-binding protein engA [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228833010|gb|EEM78578.1| GTP-binding protein engA [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228839337|gb|EEM84631.1| GTP-binding protein engA [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228845510|gb|EEM90543.1| GTP-binding protein engA [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229266550|gb|ACQ48187.1| ribosome-associated GTPase EngA [Bacillus anthracis str. A0248] gi|296323225|gb|ADH06153.1| GTP-binding protein EngA [Bacillus thuringiensis BMB171] gi|298725303|gb|EFI65955.1| GTP-binding protein EngA [Bacillus cereus SJ1] gi|300375310|gb|ADK04214.1| GTP-binding protein EngA [Bacillus cereus biovar anthracis str. CI] gi|324325620|gb|ADY20880.1| GTP-binding protein Der [Bacillus thuringiensis serovar finitimus YBT-020] Length = 436 Score = 256 bits (654), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 148/458 (32%), Positives = 243/458 (53%), Gaps = 29/458 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKST+FNR+V +++++V + PG+TRDR+Y FNI+DT GI G Sbjct: 6 IAIVGRPNVGKSTIFNRIVGERVSIVEDIPGVTRDRIYSAGEWLNHEFNIIDTGGIDIGD 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + Q+ Q E+AI+EA +I+F+ + + G+T D + L + N P+++ NK+D Sbjct: 66 EPFLT-QIRQQAEVAIDEADVIIFMTNGRDGVTAADEEVAKILYRSNKPVVLAVNKVDNP 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + Y+ Y+L F E IS H LG +L Q +P IE + +E++ Sbjct: 125 EMRSDIYDFYALGFGEPFPISGTHGLGLGDL----LDEAAQHFPK-----IEEDGYDEDT 175 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 +R +++GRPNVGKS+L+N LLG R++ + +G TRD+V Sbjct: 176 -------------------IRFSLIGRPNVGKSSLVNALLGQERVIVSNVAGTTRDAVDT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 ++ I DTAGMRK ++ ES E+ +V ++++++ + +V+LD +QD Sbjct: 217 PYSKDGKDYVIIDTAGMRKKGKVYESTEKYSVLRALRAIERSDVVLVVLDGEEGIIEQDK 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 +I ++G AVV+ +NKWD V ++ + + I +S +T + Sbjct: 277 KIAGYAHDSGRAVVIVVNKWDAVKKDEKTMKAFEENIRAHFQFLEYAPIVFLSAKTRKRT 336 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 L+ + E+N+ RI T+ LN + NP PT ++ Y TQ+ PP+F+ Sbjct: 337 QTLIPVIDEVNESHSIRIQTNVLNDVIMDAVAMNPTPTHNGSRLKIFYATQVAVKPPTFV 396 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 +F P + SY+R+L NRLR +F G PI + ++ Sbjct: 397 VFVNDPELLHFSYERFLKNRLRESFGFVGTPIHIIARA 434 >gi|289550746|ref|YP_003471650.1| GTP-binding protein EngA [Staphylococcus lugdunensis HKU09-01] gi|289180278|gb|ADC87523.1| GTP-binding protein EngA [Staphylococcus lugdunensis HKU09-01] Length = 436 Score = 256 bits (654), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 146/455 (32%), Positives = 237/455 (52%), Gaps = 29/455 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST+FNR+V +++++V + PG+TRDR+Y FNI+DT GI G Sbjct: 6 VAIVGKPNVGKSTIFNRVVGERVSIVEDTPGVTRDRIYSSGEWLTHEFNIIDTGGIEIG- 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + Q+ Q E+AI+EA +I+F+++ + G+T D + L K +++ NK+D Sbjct: 65 DAPFQTQIRAQAEIAIDEADVIIFMVNVREGLTQSDEMVAQILYKSKKTVVLAVNKVDNP 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + Y+ Y+L F E IS H LG +L + K F NK E+ Sbjct: 125 EMKTDIYDFYALGFGEPYPISGSHGLGLGDLLDEVVKHF--------------NKETEDP 170 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 E+ +R++++GRPNVGKS+L+N +LG R++ + +G TRD++ Sbjct: 171 YDEDT--------------IRLSIIGRPNVGKSSLVNAILGEERVIVSNVAGTTRDAIDT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + N + DTAGMRK ++ ES E+ +V ++++++ ++++DA +QD Sbjct: 217 EYTYDNQDYVLIDTAGMRKKGKVYESTEKYSVLRALKAIERSNVVLIVIDAEEGIIEQDK 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 R+ G AVV+ +NKWD V ++ KN + I +S + + L Sbjct: 277 RVAGYAHEEGKAVVIVVNKWDTVEKDSKTMKKFTDDIRKNFQFLDYAQIAFVSAKERQRL 336 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 L + E ++ K R+ +S LN + NP PT R + Y TQ+ PP+F+ Sbjct: 337 RTLFPYINEASENHKKRVQSSTLNEVVTDAISMNPTPTDKGRRLNVFYATQVAIEPPTFV 396 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 IF + SYKRYL N++R F G PI + Sbjct: 397 IFVNDVELMHFSYKRYLENQIRDAFGFEGTPIHII 431 >gi|149908865|ref|ZP_01897525.1| GTP-binding protein EngA [Moritella sp. PE36] gi|149808139|gb|EDM68080.1| GTP-binding protein EngA [Moritella sp. PE36] Length = 493 Score = 256 bits (654), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 160/478 (33%), Positives = 257/478 (53%), Gaps = 16/478 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M IA+VG PNVGKSTLFNRL + + A+V + PG+TRDR YGQA + G F +VDT GI Sbjct: 1 MTPVIALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQANLAGREFIVVDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 +G I +M DQ+ LAI EA +LF++D++AG+ D AI LRK+ + +V+NK Sbjct: 61 -NGDEEGIDAKMADQSLLAIEEADAVLFMVDARAGLMVADQAIAEHLRKQQKKVFLVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL------HSVIFKIFKQKY--PNHPL 172 +D E Y+L +I +I+A G + L H + ++ P Sbjct: 120 VDGLDGDVAVAEFYALALGDIYQIAASQGRGINILIEEALAHVEVADAEDEEEFSDADPF 179 Query: 173 EMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTG 232 E EE ++ T+E + + P+++A++G PNVGKSTL+NR+LG R++ Sbjct: 180 VNGELLPEEEEGEEDEQTAEDYARL-----PIKLAMIGCPNVGKSTLVNRILGEERVVVY 234 Query: 233 SQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVL 292 G TRDS+ I + DTAG+R+ I E++E+ ++ K++Q++ +++ Sbjct: 235 DMPGTTRDSIYIPMERAGRNYMLIDTAGVRRRKNINEAVEKFSIVKALQAIDDANVVLMV 294 Query: 293 LDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIY 352 LDA + QDL ++ N+G ++V+A+NKWD + + ++++ + L I Sbjct: 295 LDARVGVTSQDLTLLGFAINSGRSIVIAINKWDGLDAGVK--DRIKSELDRRLGFIDFAR 352 Query: 353 INTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKY 412 I+ IS G G+ +L S+ E R++TS L ++ + PP R +L+Y Sbjct: 353 IHFISALHGTGVGNLFESITEAFDSSTKRVSTSMLTRIVRMAVDDHQPPMHAGRRVKLRY 412 Query: 413 ITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP ++ K+ SY+RYLIN R + + G PI++ F+ S NP+ K Sbjct: 413 AHAGGYNPPLIVVHGNQVTKLSGSYRRYLINYFRRSLKIMGTPIKVEFRDSDNPFADK 470 >gi|223043265|ref|ZP_03613312.1| ribosome-associated GTPase EngA [Staphylococcus capitis SK14] gi|222443476|gb|EEE49574.1| ribosome-associated GTPase EngA [Staphylococcus capitis SK14] Length = 436 Score = 256 bits (654), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 147/456 (32%), Positives = 241/456 (52%), Gaps = 31/456 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST+FNR+V +++++V + PG+TRDR+Y FNI+DT GI G Sbjct: 6 VAIVGKPNVGKSTIFNRVVGERVSIVEDTPGVTRDRIYSSGEWLTHEFNIIDTGGIEIG- 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + Q+ Q E+AI+EA +I+F+++ + G+T D + L K P+++ NK+D Sbjct: 65 DAPFQTQIRAQAEIAIDEADVIIFMVNVREGLTQSDEMVAQMLYKSKKPVLLAVNKVDNP 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + Y+ YSL F + IS H LG +L + +EN E Sbjct: 125 EMRNDIYDFYSLGFGDPYPISGSHGLGLGDLLDAV---------------VENFGEETED 169 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P + T +R++++GRPNVGKS+L+N +LG R++ + +G TRD+V Sbjct: 170 PYDEDT-------------IRLSIIGRPNVGKSSLVNAILGEERVIVSNVAGTTRDAVDT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 ++++ + DTAGMRK ++ ES E+ +V ++++++ +V++DA +QD Sbjct: 217 EYSYEGQDYVLIDTAGMRKKGKVYESTEKYSVLRALKAIERSNVVLVIIDAEQGIIEQDK 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGD-IYINTISGRTGEG 363 R+ G A+V+ +NKWD V ++ T+ ++N Q D I +S + Sbjct: 277 RVAGYAHEEGKAIVIVVNKWDTVEKDSKTMKKF-TEDVRNEFQFLDYAQIAFVSAKESLR 335 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 L L + E ++ K R+ +S LN + NP PT R + Y TQ+ PP+F Sbjct: 336 LRTLFPYITEASENHKKRVQSSTLNEVVTDAISMNPTPTDKGRRLNVFYTTQVAIEPPTF 395 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 ++F + SYKRYL N++R F G PI + Sbjct: 396 VVFVNDVELMHFSYKRYLENQIRNAFGFEGTPIHII 431 >gi|323526574|ref|YP_004228727.1| ribosome-associated GTPase EngA [Burkholderia sp. CCGE1001] gi|323383576|gb|ADX55667.1| ribosome-associated GTPase EngA [Burkholderia sp. CCGE1001] Length = 445 Score = 256 bits (653), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 162/469 (34%), Positives = 239/469 (50%), Gaps = 32/469 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+ + +VDT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRTGERPYLVVDTGGFEPVA 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I +M QT A+ E+ +++F++D + G+ P D I +LRK PI +V NK + Sbjct: 65 KDGILHEMARQTRQAVEESDIVVFIVDGRNGLAPQDKVIADYLRKTGRPIFLVVNKAEGM 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + Y L + ISA H G +E+ I + Y P EES Sbjct: 125 KYSAVAADFYELGLGDPRAISAAHGDGVTEM---INEALGVAYAGQP----------EES 171 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 +E + ++IA+VGRPNVGKSTLIN L+G R++ G TRDS+ + Sbjct: 172 DEEKA-----------AHGIKIAIVGRPNVGKSTLINALVGEERVIAFDMPGTTRDSIYV 220 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + P + DTAG+R+ ++ E++E+ +V K++QS+ I+LLDA QD Sbjct: 221 DFERQGKPYTLIDTAGLRRRGKVFEAIEKFSVVKTLQSISDANVVILLLDARQDISDQDA 280 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAI--KNLPQIGDIYINTISGRTGE 362 I V G A+V+ +NKWD + + RTKA + L + + IS Sbjct: 281 HIAGFVVEQGRALVVGVNKWDGLDSHVR----ERTKADLERKLKFLDFAKFHFISAAEKT 336 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWL-QKTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 G+ LM SV + +++ T L L + + Q P R +L+Y Q +PP Sbjct: 337 GIGPLMRSVDDAYAAAMSKLPTPKLTRALIEAVEFQQPRRRGPVR-PKLRYAHQGGQNPP 395 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +I + I E+YKRYL NR R F L+G P+R+ F+SS NPY K Sbjct: 396 IIVIHGNALDAITETYKRYLENRFRETFKLTGTPLRIEFRSSTNPYADK 444 >gi|218960708|ref|YP_001740483.1| GTP-binding protein [Candidatus Cloacamonas acidaminovorans] gi|167729365|emb|CAO80276.1| GTP-binding protein [Candidatus Cloacamonas acidaminovorans] Length = 449 Score = 256 bits (653), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 149/463 (32%), Positives = 245/463 (52%), Gaps = 27/463 (5%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 Y ++IVG PNVGKSTLFNRL +K+ A+V GITRDR Y NG IF +VDT GI Sbjct: 4 YIVSIVGRPNVGKSTLFNRLCRKRSAIVDFEAGITRDRKYEDVEWNGKIFKLVDTGGIVF 63 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 +I K + Q LAI+E+ LI+F++D++ G T D I L +++V+NK D Sbjct: 64 NSIETIDKMVLHQVMLAIDESDLIIFMVDAQTGTTDIDKEIAKILYPHKDKVMLVANKAD 123 Query: 123 TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSE-LHSVIFKIFKQKYPNHPLEMIENNKRN 181 + Y+ L F +++ ISA T + L +VI +I Sbjct: 124 NEKYEWEVYDFLQLGFGDVIPISASQGRNTGDFLDAVIERI------------------- 164 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 + E KSS RIAVVG+PNVGKS+++N LLG +L+ G TRD+ Sbjct: 165 -PGTQSIFQLEEKSSAT------RIAVVGKPNVGKSSIVNLLLGNPKLIVTEIPGTTRDA 217 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 + + + N + DTAG+R+ +R+ +E + ++++++ C+ +++L A Sbjct: 218 IDSPFRYHNKDYILIDTAGLRRKTRVNYGVEYFSTLRTIEAIDRCDIVVLVLTADEELSV 277 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTG 361 QD++I +++ NKWD++ + N + + +P + + IS +T Sbjct: 278 QDIKIASYAKRKMKEIMVVYNKWDLIEKETNTINKYLKELHYQMPFLQFAPVLFISAKTT 337 Query: 362 EGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 + + +M +V +I + + RI+T+ LN +++K + PP R+ ++ Y+TQ PP Sbjct: 338 QRIHRIMETVAKIEEESEKRISTAELNRFMEKVIMHRPPTHPSGRHIKIYYLTQAAVKPP 397 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 +F+ FC P+ I E+Y+RYL N+LR F G+ I++ F+ K Sbjct: 398 TFIFFCNTPSLITENYRRYLHNQLREMFKFEGVSIKLIFKGRK 440 >gi|256383817|gb|ACU78387.1| ribosome-associated GTPase EngA [Mycoplasma mycoides subsp. capri str. GM12] gi|256384647|gb|ACU79216.1| ribosome-associated GTPase EngA [Mycoplasma mycoides subsp. capri str. GM12] gi|296455372|gb|ADH21607.1| ribosome-associated GTPase EngA [synthetic Mycoplasma mycoides JCVI-syn1.0] Length = 435 Score = 256 bits (653), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 157/467 (33%), Positives = 257/467 (55%), Gaps = 42/467 (8%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 +AIVG PNVGKS+LFNR++K+K ++V N PG+TRDR+Y A F ++DT GI+ Sbjct: 5 VVAIVGKPNVGKSSLFNRIIKEKKSIVDNKPGVTRDRIYSSAEWLTREFILIDTGGISLS 64 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + ++ QT++AI +A +I+F++D + D I L K P+I+ NK D Sbjct: 65 DQL-FSNEIKLQTQIAIEQADVIIFVVDFLNNLDNDDKMIAKILHKSKKPVILAVNKYDK 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + Y+ SL F ++ IS+ H +G +L ++I +NEE Sbjct: 124 KTIDDHNYQFMSLGFSDLYFISSTHGIGVGDLLD---------------KVISYISKNEE 168 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 K++ T +IA++GRPNVGKS+L+N L+ NR++ G T D+V Sbjct: 169 IIKDDST--------------KIAIIGRPNVGKSSLVNSLVNENRMIVSEIEGTTLDAVD 214 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 IS+++ + DTAG+RK S++ +++E+ + +S+ ++ + ++++DAT P QD Sbjct: 215 ISFSYNKKKYTVIDTAGIRKKSKLGQTIEKYSYLRSLSAISNADIVLLMIDATKPITDQD 274 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDK----LNLLQDLRTKAIKNLPQIGDIYINTISGR 359 I +++ V++ +NKWD++ +K L +++R K + I+I+T+ Sbjct: 275 TNIGGLIYDEKKPVIIVVNKWDLIKNKETEILKKEEEIRA-YFKYISYAKIIFISTLDKT 333 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLK--YITQIQ 417 + DL V EI + +I T LN L K QL NP P FN NRLK Y +Q+Q Sbjct: 334 RITKILDL---VDEIKQNLDIKIKTYVLNEVLNKAQLINPAPE-FNG-NRLKIYYASQVQ 388 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 + P+F++FC PN + SYKR+L N++R +F L IPI + F+ K Sbjct: 389 AYIPTFVLFCNNPNYLHFSYKRFLENQIRFSFGLDSIPINLIFREKK 435 >gi|121604778|ref|YP_982107.1| GTP-binding protein EngA [Polaromonas naphthalenivorans CJ2] gi|166225835|sp|A1VNF8|DER_POLNA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|120593747|gb|ABM37186.1| small GTP-binding protein [Polaromonas naphthalenivorans CJ2] Length = 445 Score = 256 bits (653), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 158/468 (33%), Positives = 245/468 (52%), Gaps = 30/468 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTLFNRL K + A+V + G+TRDR YG + + ++DT G Sbjct: 5 IALVGRPNVGKSTLFNRLTKTRDAIVADFAGLTRDRHYGNGKLGPHEYIVIDTGGFEPDA 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I K+M QT A+ E+ +++F++D++AGI+ D+ I ++LRK P ++ +NK + Sbjct: 65 VTGIYKEMARQTRQAVAESDVVIFVVDARAGISAQDYDIANYLRKLGKPTVLAANKAEGL 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 E + L E++ +SA H G L + PL N Sbjct: 125 PEGTQVSEFFELGLGEMLAVSASHGQGMRMLVDLALA---------PL--------NLPD 167 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P E E + +K +AV GRPNVGKSTLIN LG RL+ G TRD++S+ Sbjct: 168 PAEETEQEDPAVIK-------LAVAGRPNVGKSTLINTWLGEERLVAFDLPGTTRDAISV 220 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + E+ DTAG+R+ ++ E++E+ +V K++Q++ ++LLDAT QD Sbjct: 221 PFEHAGQKFELIDTAGLRRKGKVFEAIEKFSVVKTLQAIENANVVLLLLDATQGVTDQDA 280 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKN-LPQIGDIYINTISGRTGEG 363 I + +G AVVLA+NKWD V ++L ++I+ L + I+ IS +G Sbjct: 281 HIAGYILESGRAVVLAVNKWDAVD---AYQRELLQRSIETRLGFLKFASIHHISAIKRQG 337 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWL-QKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 L + S+++ + +++T L L + Q Q P + R +L+Y Q +PP Sbjct: 338 LGPVWKSIIQAHASANRKMSTPVLTRLLMEAVQFQQPQRSGVFR-PKLRYAHQGGMNPPI 396 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +I + + ESYKRYL R+R F L G P+R+ +SS NP+ K Sbjct: 397 VIIHGNSLDHVTESYKRYLEGRIRKEFDLVGTPLRIQLKSSVNPFKDK 444 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 48/154 (31%), Positives = 75/154 (48%), Gaps = 9/154 (5%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + +A+ G PNVGKSTL N + ++ V + PG TRD + G F ++DTAG+ Sbjct: 179 VIKLAVAGRPNVGKSTLINTWLGEERLVAFDLPGTTRDAISVPFEHAGQKFELIDTAGLR 238 Query: 62 DGKNC--SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 +I K +T AI A+++L L+D+ G+T D I ++ + +++ N Sbjct: 239 RKGKVFEAIEKFSVVKTLQAIENANVVLLLLDATQGVTDQDAHIAGYILESGRAVVLAVN 298 Query: 120 KMDTRIA-QRNFYE------IYSLDFKEIVEISA 146 K D A QR + + L F I ISA Sbjct: 299 KWDAVDAYQRELLQRSIETRLGFLKFASIHHISA 332 >gi|307729253|ref|YP_003906477.1| ribosome-associated GTPase EngA [Burkholderia sp. CCGE1003] gi|307583788|gb|ADN57186.1| ribosome-associated GTPase EngA [Burkholderia sp. CCGE1003] Length = 445 Score = 256 bits (653), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 159/469 (33%), Positives = 241/469 (51%), Gaps = 32/469 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+ + +VDT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRTGERPYLVVDTGGFEPVA 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I +M QT A+ E+ +++F++D + G+ P D +I +LRK PI +V NK + Sbjct: 65 KDGILHEMARQTRQAVEESDIVVFIVDGRNGLAPQDKSIADYLRKTGRPIFLVVNKAEGM 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + Y L + ISA H G +E+ I + Y P E ++ + Sbjct: 125 KYSAVAADFYELGLGDPRAISAAHGDGVTEM---INEALGVAYAGQPEESDDDKE----- 176 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 ++ ++IA+VGRPNVGKSTLIN L+G R++ G TRDS+ + Sbjct: 177 ----------------ARGVKIAIVGRPNVGKSTLINALVGEERVIAFDMPGTTRDSIYV 220 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + P + DTAG+R+ ++ E++E+ +V K++QS+ I+LLDA +QD Sbjct: 221 DFERQGKPYTLIDTAGLRRRGKVFEAIEKFSVVKTLQSISDANVVILLLDARQDISEQDA 280 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAI--KNLPQIGDIYINTISGRTGE 362 I V G A+V+ +NKWD + + RTKA + L + + IS Sbjct: 281 HIAGFVVEQGRALVVGVNKWDGLDSHVR----ERTKADLERKLKFLDFAKFHFISAAEKT 336 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWL-QKTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 G+ LM SV + +++ T L L + + Q P R +L+Y Q +PP Sbjct: 337 GIGPLMRSVDDAYTAAMSKLPTPKLTRALIEAVEFQQPRRRGPVR-PKLRYAHQGGQNPP 395 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +I + I E+YKRYL NR R F L+G P+R+ F+SS NPY K Sbjct: 396 IIVIHGNALDAITETYKRYLENRFRETFKLTGTPLRIEFRSSTNPYADK 444 >gi|56476106|ref|YP_157695.1| GTP-binding protein EngA [Aromatoleum aromaticum EbN1] gi|81821192|sp|Q5P7B7|DER_AZOSE RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|56312149|emb|CAI06794.1| GTP-binding protein engA [Aromatoleum aromaticum EbN1] Length = 442 Score = 256 bits (653), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 154/469 (32%), Positives = 239/469 (50%), Gaps = 33/469 (7%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TI +VG PNVGKSTLFNRL K + A+V + PG+TRDR YG + + +VDTAG Sbjct: 4 TIVLVGRPNVGKSTLFNRLTKTRDALVADQPGLTRDRHYGIGRVGDRDYLVVDTAGFDPV 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 I +M Q E AI EA +LF++D ++G+TP+D I + LR+ P+ +V NK + Sbjct: 64 AKDGIMHEMARQAEQAIAEADALLFMVDGRSGLTPHDEQIAARLRRAGRPVYLVVNKSEG 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 E ++L + + +SA H G +L ++ F + Sbjct: 124 MERTMVAAEFHALGLGDPLPVSASHGEGVKQLLDLVLGAFPP----------------DV 167 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 P+E+ EG++ RIA+VGRPNVGKST +N LLG R++ G TRD+++ Sbjct: 168 EPEED---EGRTP--------RIAIVGRPNVGKSTFVNSLLGEERVIAFDMPGTTRDAIA 216 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 I + + DTAG+R+ ++ E++E+ +V K++Q++ +++LDA+ QD Sbjct: 217 IPFERDGRHYTLIDTAGLRRRGKVFEAVEKFSVIKTLQAIEQANVVVLVLDASQDISDQD 276 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLL--QDLRTKAIKNLPQIGDIYINTISGRTG 361 I + G A+V+A+NKWD V D L QDL K L + + IS G Sbjct: 277 AHIAGFILEAGRALVVAVNKWDDVDDYRRELIKQDLTRK----LNFLSFARFHYISALKG 332 Query: 362 EGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 G+ +M SV ++T L +Q + PP +++Y Q ++PP Sbjct: 333 AGVAAVMKSVDAAYAAAMVNLSTPRLTRTMQAALAKQAPPRHGVFRPKMRYAHQGGNNPP 392 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +I + +P SY RYL F L G P+R+ F+++ NP+I K Sbjct: 393 VVVIHGAALDHVPTSYVRYLERTFMEAFKLQGTPLRIQFRTAHNPFIGK 441 >gi|237725292|ref|ZP_04555773.1| GTP-binding protein engA [Bacteroides sp. D4] gi|229436558|gb|EEO46635.1| GTP-binding protein engA [Bacteroides dorei 5_1_36/D4] Length = 437 Score = 256 bits (653), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 160/456 (35%), Positives = 242/456 (53%), Gaps = 30/456 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNRL K + A+V G TRDR YG++ G F++VDT G Sbjct: 5 VAIVGRPNVGKSTLFNRLTKTRQAIVNEQAGTTRDRQYGKSEWVGHEFSVVDTGGWVVNS 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +++ Q LAI+EA +ILF++D G+T D A+ S LR+ P+I+V+NK D Sbjct: 65 DDVFEEEIRKQVSLAIDEADVILFVVDVVNGVTDLDMAVASILRRTKKPVIMVANKTDNN 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 Q N E Y L + ISA GT EL ++ F +K EE Sbjct: 125 ELQYNAAEFYKLGLGDPYCISALSGSGTGELLDLVVGKF--------------SKEGEEL 170 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 E+I R AVVGRPN GKS++IN +G +R + +G TRDS+ Sbjct: 171 LDEDIP--------------RFAVVGRPNAGKSSIINAFIGEDRNIVTEIAGTTRDSIYT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + DTAG+RK +++ E LE +V +S++S+ + I++LDA+ E QDL Sbjct: 217 RYEKFGFDFYLVDTAGIRKKNKVNEDLEYYSVIRSIRSIENSDVCILMLDASRGIEGQDL 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKN-LPQIGDIYINTISGRTGEG 363 I + +V+ +NKWD+V +K + +AI++ L D I S T + Sbjct: 277 NIFSLIQRNQKGLVVVVNKWDLVENKDAKVMKTYEEAIRSRLAPFVDFPIIFASALTKQR 336 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP-PS 422 + ++ + E+ + TRI T+ LN + PPP+ +Y ++KY TQ+ ++ PS Sbjct: 337 IFKVLETAKEVYQARTTRIPTARLNEEMLPLIEAYPPPSNKGKYIKIKYCTQLPNTQVPS 396 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 F+ F P + E YKR+L N++R ++LSG PI + Sbjct: 397 FVFFANLPQYVKEPYKRFLENKIREKWNLSGTPINI 432 >gi|228990617|ref|ZP_04150582.1| GTP-binding protein engA [Bacillus pseudomycoides DSM 12442] gi|228996716|ref|ZP_04156353.1| GTP-binding protein engA [Bacillus mycoides Rock3-17] gi|228763035|gb|EEM11945.1| GTP-binding protein engA [Bacillus mycoides Rock3-17] gi|228769143|gb|EEM17741.1| GTP-binding protein engA [Bacillus pseudomycoides DSM 12442] Length = 436 Score = 256 bits (653), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 145/455 (31%), Positives = 241/455 (52%), Gaps = 29/455 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST+FNR+V +++++V + PG+TRDR+Y FNI+DT GI G Sbjct: 6 VAIVGRPNVGKSTIFNRIVGERVSIVEDIPGVTRDRIYSAGEWLNHEFNIIDTGGIDIGD 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + Q+ Q E+AI+EA +I+F+ + + G+T D + L + P+++ NK+D Sbjct: 66 EPFLT-QIRQQAEVAIDEADVIIFMTNGRDGVTAADEEVAKILYRSKKPVVLAVNKVDNP 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + Y+ Y+L F E IS H LG +L K F + IE ++E+ Sbjct: 125 EMRNDIYDFYALGFGEPFPISGTHGLGLGDLLDEAAKHFPK---------IEEEAYDDET 175 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 +R +++GRPNVGKS+L+N LLG R++ + +G TRD+V Sbjct: 176 -------------------IRFSLIGRPNVGKSSLVNALLGQERVIVSNVAGTTRDAVDT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 ++ I DTAGMRK ++ ES E+ +V ++++++ + +V+LD +QD Sbjct: 217 PYSKDGQDYVIIDTAGMRKKGKVYESTEKYSVLRALRAIERSDVVLVVLDGEEGIIEQDK 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 +I ++G AV++ +NKWD V ++ + + I +S +T + Sbjct: 277 KIAGYAHDSGRAVIIVVNKWDAVKKDEKTMKAFEENIRAHFQFLDYAPIVFLSAKTKKRT 336 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 L+ + E+N+ R+ T+ LN + NP PT + ++ Y TQ+ PP+F+ Sbjct: 337 QTLLPVINEVNESHSIRVQTNVLNDVIMDAVAMNPTPTHNGQRLKIFYATQVAVKPPTFV 396 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 +F P + SY+R+L NRLR +F G PIR+ Sbjct: 397 VFVNDPELMHFSYERFLKNRLRESFGFVGTPIRII 431 >gi|289578647|ref|YP_003477274.1| ribosome-associated GTPase EngA [Thermoanaerobacter italicus Ab9] gi|289528360|gb|ADD02712.1| ribosome-associated GTPase EngA [Thermoanaerobacter italicus Ab9] Length = 439 Score = 256 bits (653), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 149/455 (32%), Positives = 244/455 (53%), Gaps = 30/455 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 ++IVG PNVGKSTLFN+++ K++++V + PG+TRDR+ G A F +VDT G+ Sbjct: 6 VSIVGRPNVGKSTLFNKIMGKRISIVEDKPGVTRDRICGNAEWLNKKFILVDTGGLDPDA 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 I ++ Q E AI + +ILFL+D+K G+ P D I LR+ II+V NK+D Sbjct: 66 EDIIFSKVRLQVEAAIEASEVILFLVDAKEGLMPEDEEIADILRRAKKEIILVCNKVDNF 125 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + +Y+ +SL + ISA + LG EL I K K P LE E Sbjct: 126 KELPPTYYDFFSLGLGNPIPISASNGLGIGELLDEIVK----KLPQEGLEYSEET----- 176 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 ++IAV+GRPNVGKS+L+N++LG R++ G TRD++ Sbjct: 177 --------------------IKIAVIGRPNVGKSSLVNKILGEERVIVSDIPGTTRDAID 216 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 ++ + DTAG+R+ SRI+ES+E+ +V +++ ++ + ++++DA +QD Sbjct: 217 TPFSKDGKNYVLIDTAGIRRKSRISESIERYSVLRALTAIERSDICLLMIDAIEGPAEQD 276 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 +I F G +++ +NKWD + N + + + L I I IS +TG+ Sbjct: 277 TKIAGYAFENGKGIIIVVNKWDAIKKNNNTVNEYTKMIREKLSFISFAPILFISAKTGQR 336 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 + ++ +V ++ + RITT LN+ L + L PPP + ++ Y +Q+ PPSF Sbjct: 337 VHRVLQTVDKVWGEYNKRITTGLLNNVLNEAMLMFPPPADKGKQLKVYYTSQVGIKPPSF 396 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 ++F P + SY R++ N LR NF G+P+++ Sbjct: 397 VVFVNDPELMHFSYLRFIENTLRQNFGFEGVPLKI 431 >gi|257066409|ref|YP_003152665.1| small GTP-binding protein [Anaerococcus prevotii DSM 20548] gi|256798289|gb|ACV28944.1| small GTP-binding protein [Anaerococcus prevotii DSM 20548] Length = 439 Score = 256 bits (653), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 148/460 (32%), Positives = 241/460 (52%), Gaps = 35/460 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + +VG NVGKSTLFNRLV K+ ++ + G+TRDR+ + F +VDT G+ Sbjct: 6 VTLVGRTNVGKSTLFNRLVGKRKSITEDISGVTRDRIVDKVEWQNKEFLLVDTGGLDISN 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + ++ Q E A+ E +LILF++D K G+ PYD I + +RK N P+IIV+NK+D+ Sbjct: 66 KEVMNTEIKAQVEKALIETNLILFVVDGKEGVNPYDVDIANEIRKYNKPVIIVANKLDSF 125 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + Y+ Y F ++ ISAE G +L I Sbjct: 126 KIPDDIYDFYQFGFDDMSMISAEQSKGLGDLLDKIVSFIDF------------------- 166 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 SS I RIA++G+PN GKS+L+N LL R++ +G TRD+V Sbjct: 167 ----------SSFDQIEDETRIAIIGKPNAGKSSLVNLLLNEERMIVTDIAGTTRDAVDS 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 W + +H + DTAG+R+ S++ E++E +++ +V + E + L+DA + +QD Sbjct: 217 YWQYNDHNYVLIDTAGLRRKSKVKENVEYYANQRTFDAVDSSEICLFLIDANVGVTEQDA 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNL---PQIGDIYINTISGRTG 361 +I N A+++A+NKWD+V + N +++L L P ++I+ + + Sbjct: 277 KIAGYAHNQKKAIIIAVNKWDLVDKETNTMRNLEKDIRDTLSFAPYAPIVFISVLENKRI 336 Query: 362 EGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 + L DL V + + TRI T LN+ LQ L NPPP + ++ Y++Q+ ++PP Sbjct: 337 DRLLDLFEVV---SNNYHTRIKTGVLNNILQDAILLNPPPQDKGKRLKIYYMSQVSTAPP 393 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 F++ + + SY RYL N++R N+SL G+P F+ Sbjct: 394 KFMLSINDRDLVHFSYTRYLENQIRQNYSLVGVPFSFVFK 433 >gi|224025980|ref|ZP_03644346.1| hypothetical protein BACCOPRO_02731 [Bacteroides coprophilus DSM 18228] gi|224019216|gb|EEF77214.1| hypothetical protein BACCOPRO_02731 [Bacteroides coprophilus DSM 18228] Length = 437 Score = 256 bits (653), Expect = 8e-66, Method: Compositional matrix adjust. Identities = 157/454 (34%), Positives = 240/454 (52%), Gaps = 30/454 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNRL K + A+V G TRDR YG++ G F++VDT G Sbjct: 5 VAIVGRPNVGKSTLFNRLTKTRQAIVNEQAGTTRDRQYGKSEWLGKEFSVVDTGGWVVNS 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +++ Q LA+ EA +ILF++D G+T D + LR+ P+I+V+NK D+ Sbjct: 65 DDVFEEEIRKQVLLAVEEADVILFVVDVMNGVTDLDAQVAGILRRSKTPVILVANKTDSN 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 Q N E YSL + ISA GT +L ++ F+ K EE+ Sbjct: 125 ELQYNAAEFYSLGLGDPFCISAMSGSGTGDLLDLVLSKFR--------------KNVEET 170 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 +E+I R AVVGRPN GKS++IN +G R + +G TRDS+ Sbjct: 171 VEEDIP--------------RFAVVGRPNAGKSSIINAFIGEERNIVTDIAGTTRDSIYT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 ++ + DTAG+RK ++++E LE +V +S++++ + I++LDAT E QDL Sbjct: 217 RYDKFGFDFYLVDTAGIRKKNKVSEDLEYYSVIRSIRAIEGSDVCILMLDATRGVEGQDL 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKN-LPQIGDIYINTISGRTGEG 363 I + +V+ +NKWD+V DK + +AI+N L D I S T + Sbjct: 277 NIFSLIQRNQKGLVVVVNKWDLVEDKSAKVMKTFEEAIRNRLAPFTDFPIIFASALTKQR 336 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP-PS 422 + ++ + E+ RI T+ LN + PPP+ +Y ++KY+TQ+ ++ PS Sbjct: 337 IFKVLETAKEVYLAKTKRIPTARLNEEMLPLIEAYPPPSNKGKYIKIKYVTQLPNTQIPS 396 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 F+ F P + E YKR+L N++R + L G PI Sbjct: 397 FVFFANLPQYVKEPYKRFLENKIRERWDLCGTPI 430 >gi|212638926|ref|YP_002315446.1| GTP-binding protein EngA [Anoxybacillus flavithermus WK1] gi|212560406|gb|ACJ33461.1| Predicted GTPase [Anoxybacillus flavithermus WK1] Length = 449 Score = 256 bits (653), Expect = 8e-66, Method: Compositional matrix adjust. Identities = 145/455 (31%), Positives = 243/455 (53%), Gaps = 31/455 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST+FNR+V +++++V + PG+TRDR+Y A FN++DT GI G Sbjct: 19 VAIVGRPNVGKSTIFNRIVGERISIVEDVPGVTRDRIYSSAEWLNTTFNMIDTGGIDIGD 78 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + Q+ Q E+AI+EA +I+F+ + + G+T D + L + N P+++ NK+D Sbjct: 79 E-PLLTQIRQQAEIAIDEADVIIFMTNGRDGVTAADEEVAKILYRSNKPVVLAVNKIDNP 137 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + N Y+ Y+L F E + IS H LG +L + F Sbjct: 138 DMRENIYDFYTLGFGEPIPISGTHGLGIGDLLDAVVAHF--------------------- 176 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 PK T E + V ++ ++GRPNVGKS+L+N +LG R++ +G TRD++ Sbjct: 177 PKRE-TKEYDADV------IKFCLIGRPNVGKSSLVNAILGEERVIVSDIAGTTRDAIDT 229 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 ++ I DTAGMRK ++ ES E+ +V ++++++ + +V+++A +QD Sbjct: 230 TFKRDGQEYVIIDTAGMRKRGKVYESTEKYSVLRALKAIERSDVVLVVINAEEGIIEQDK 289 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIY-INTISGRTGEG 363 +I G VV+ +NKWD + + + K I++ Q D I +S +T + Sbjct: 290 KIAGYAHEAGRGVVIVVNKWDAIEKDEKTMNEFE-KNIRDHFQFLDYAPIVFVSAKTKQR 348 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 L L+ + +++ R+ T+ LN L NP PT + ++ Y+TQ+ PP+F Sbjct: 349 LHKLLPVIQMVSENHAMRVQTNVLNEVLMDAIAMNPTPTHNGQRLKIYYMTQVAVKPPTF 408 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 ++F P + SY+R+L NR+R F G PI++ Sbjct: 409 VVFVNDPELMHFSYERFLENRIRDTFGFEGTPIKI 443 >gi|15614201|ref|NP_242504.1| GTP-binding protein EngA [Bacillus halodurans C-125] gi|20137999|sp|Q9KCD4|DER_BACHD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|10174255|dbj|BAB05357.1| BH1638 [Bacillus halodurans C-125] Length = 437 Score = 256 bits (653), Expect = 8e-66, Method: Compositional matrix adjust. Identities = 142/455 (31%), Positives = 237/455 (52%), Gaps = 29/455 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 IAIVG PNVGKST+FNR+V +++A+V + PG+TRDR+Y FN++DT GI G Sbjct: 5 VIAIVGRPNVGKSTIFNRIVGERVAIVEDRPGVTRDRIYSHGEWLNREFNVIDTGGIEIG 64 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + QM Q ELAI EA +I+F+++ + G+T D + L + P+++ NK+D Sbjct: 65 DEPLLV-QMRAQAELAIKEADVIIFIVNGREGVTAADQEVAKLLFRSKKPVVLGVNKIDH 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 Q YE YSL + + IS H LG +L + F Sbjct: 124 PDMQEELYEFYSLGIGDPIPISGAHGLGLGDLLDACVEHF-------------------- 163 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 P++ + ++ RI+++GRPNVGKS+L+N +LG R++ + G TRD++ Sbjct: 164 -PEDEGDDYDEDTI-------RISLIGRPNVGKSSLVNAMLGEERVIVSNIPGTTRDAID 215 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 +++ + + DTAGMRK ++ ES E+ +V +S++++ + +V+L+ +QD Sbjct: 216 TAFSRDDQEYVLIDTAGMRKRGKVYESTEKYSVLRSLKAIERSDVVLVVLNGEEGIIEQD 275 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 +I G A+++ +NKWD V L + K + + +S +T + Sbjct: 276 KKIAGYAHEAGRAIIIVVNKWDAVEKDDKTLHRFQQKIRDEFQFLDYAPVLFVSAKTKQR 335 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 L ++ +V ++++ R+ T LN + NP PT + ++ Y+TQ+ PP+F Sbjct: 336 LQHVLPAVKKVSENHNLRVPTHVLNDLVMDAVAMNPTPTDHGKRLKINYVTQVAVGPPTF 395 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 + F P + SY R+L NRLR F G PI++ Sbjct: 396 VFFVNDPELMHFSYARFLENRLRDTFEFEGTPIKI 430 >gi|282860196|ref|ZP_06269270.1| ribosome-associated GTPase EngA [Prevotella bivia JCVIHMP010] gi|282587017|gb|EFB92248.1| ribosome-associated GTPase EngA [Prevotella bivia JCVIHMP010] Length = 437 Score = 256 bits (653), Expect = 8e-66, Method: Compositional matrix adjust. Identities = 153/460 (33%), Positives = 249/460 (54%), Gaps = 30/460 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +AIVG PNVGKSTLFNRL K + A+V + G TRDR YG+ NG F++VDT G Sbjct: 1 MANLVAIVGRPNVGKSTLFNRLTKTRHAIVSDVAGTTRDRQYGKCTWNGREFSVVDTGGW 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + + Q +A EA L+LF++D++ G+T +D + LR+ +P+++V+NK Sbjct: 61 VVKSDDIFEDAIRQQVLVATEEADLVLFVVDTETGVTDWDEDVALILRRTKLPVLLVANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D E Y L + + ISA+ GT +L ++ +K P+ P E +E Sbjct: 121 VDNSGEYYTSAEFYKLGLGDPICISAQTGGGTGDLLDILL----EKMPDTPEEGLE---- 172 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 E+ P R AVVGRPN GKS+LIN +G +R + +G TRD Sbjct: 173 -EDIP-------------------RFAVVGRPNAGKSSLINAFIGEDRNIVTEIAGTTRD 212 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ +N + DTAG+R+ ++++E LE +V +S++S+ + I+++DAT E Sbjct: 213 SIYTRYNKFGFDFYLVDTAGIRRKNKVSEDLEFYSVMRSIRSIENSDVCILMIDATRGIE 272 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKN-LPQIGDIYINTISGR 359 QD+ I + ++V+ +NKWD+V DK + D T AI+N + D I S Sbjct: 273 AQDMNIFQLIQRNNKSLVVVVNKWDLVPDKDQKVIDTFTNAIRNRMAPFVDFPIIFASAL 332 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 T + + ++ + E+ + K I T+ LN + PP ++ +Y ++KY +Q+ ++ Sbjct: 333 TKQRIFKVLETAKEVYQNRKAHIGTNKLNEVMLPIIEATPPQSVKGKYIKIKYCSQLPNT 392 Query: 420 P-PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 PSF+ + P I E Y+R+L N++R +++L G PI + Sbjct: 393 QIPSFVFYANLPQYIKEQYRRFLENQIRAHWNLHGSPINI 432 >gi|288556077|ref|YP_003428012.1| GTP-binding protein Der [Bacillus pseudofirmus OF4] gi|288547237|gb|ADC51120.1| GTP-binding protein EngA [Bacillus pseudofirmus OF4] Length = 437 Score = 256 bits (653), Expect = 8e-66, Method: Compositional matrix adjust. Identities = 146/455 (32%), Positives = 235/455 (51%), Gaps = 29/455 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST+FNR+V +++A+V + PG+TRDRLY FN++DT GI + Sbjct: 6 VAIVGRPNVGKSTIFNRIVGERVAIVEDMPGVTRDRLYSHGEWLDREFNLIDTGGI-ELA 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + QM +Q ELAI EA +I+F+++ + GIT D + L + P+++ NK+D Sbjct: 65 DEPLLNQMREQAELAIEEADVIVFIVNGREGITSADQEVAKILFRSKKPVVLGVNKVDNP 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 YE YSL IS H LG +L + K F +K ++ Sbjct: 125 DMHDLLYEFYSLGIGNPFPISGSHGLGLGDLLDEVLKHFPEKV------------EDDYD 172 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P +RI+++GRPNVGKS+L+N +LG R++ + G TRD++ Sbjct: 173 PDT----------------IRISLIGRPNVGKSSLVNAMLGEERVIVSNIPGTTRDAIDT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 S+ + DTAGMRK ++ ES E+ +V +S++++ +V+++A +QD Sbjct: 217 SFTRDGQDYVLIDTAGMRKRGKVYESTEKYSVLRSLKAIERSNVVLVVINAEEGIIEQDK 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 +I G AV++ +NKWD + +Q K + I S +T + L Sbjct: 277 KIAGYAHEAGRAVIIVVNKWDAIERDDKTMQKFEQKIRDEFLFLSYAPILFTSAKTKQRL 336 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 ++ V ++++ R+ T+ LN + NP PT + R+ Y+TQ+ PP+F+ Sbjct: 337 QHVLPMVKKVSQNHNLRVPTNVLNDLIMDAVAMNPTPTDKGKRLRINYVTQVAVEPPTFV 396 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 F P + SY+R+L NRLR F G PI++ Sbjct: 397 FFVNEPELLHFSYERFLENRLRATFEFEGTPIKII 431 >gi|187924514|ref|YP_001896156.1| GTP-binding protein EngA [Burkholderia phytofirmans PsJN] gi|238689579|sp|B2SXS6|DER_BURPP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|187715708|gb|ACD16932.1| small GTP-binding protein [Burkholderia phytofirmans PsJN] Length = 445 Score = 256 bits (653), Expect = 8e-66, Method: Compositional matrix adjust. Identities = 163/469 (34%), Positives = 240/469 (51%), Gaps = 32/469 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+ + +VDT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRTRDALVADLPGLTRDRHYGEGRAGDRPYLVVDTGGFEPVA 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I +M QT A+ E+ +++F++D + G+ P D +I +LRK PI +V NK + Sbjct: 65 KDGILHEMARQTRQAVEESDIVVFIVDGRNGLAPQDKSIADYLRKVGRPIFLVVNKAEGM 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + Y L + ISA H G +E+ I + + Y P EES Sbjct: 125 KYSNVAADFYELGLGDPRAISAAHGDGVTEM---INEALEVAYAGQP----------EES 171 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 +E T + ++IA+VGRPNVGKSTLIN L+G R++ G TRDS+ + Sbjct: 172 DEEKQT-----------RGVKIAIVGRPNVGKSTLINALVGEERVIAFDMPGTTRDSIYV 220 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + P + DTAG+R+ ++ E++E+ +V K++QS+ I+LLDA +QD Sbjct: 221 DFERGGKPYTLIDTAGLRRRGKVFEAIEKFSVVKTLQSISDANVVILLLDARQDISEQDA 280 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAI--KNLPQIGDIYINTISGRTGE 362 I V G A+V+ +NKWD + + RTKA + L + + IS Sbjct: 281 HIAGFVVEQGRALVVGVNKWDGLDPHVR----ERTKADLERKLKFLDFAKFHFISAAEKT 336 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWL-QKTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 G+ LM SV + ++ T L L + Q P R +L+Y Q +PP Sbjct: 337 GIGPLMRSVDDAYAAAMAKLPTPKLTRALIDAVEFQQPRRRGPVR-PKLRYAHQGGQNPP 395 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +I + I E+YKRYL NR R F L+G P+R+ F+SS NPY K Sbjct: 396 IIVIHGNALDAITETYKRYLENRFRETFKLTGTPLRIEFRSSTNPYADK 444 >gi|302874737|ref|YP_003843370.1| ribosome-associated GTPase EngA [Clostridium cellulovorans 743B] gi|307690648|ref|ZP_07633094.1| GTP-binding protein EngA [Clostridium cellulovorans 743B] gi|302577594|gb|ADL51606.1| ribosome-associated GTPase EngA [Clostridium cellulovorans 743B] Length = 438 Score = 255 bits (652), Expect = 8e-66, Method: Compositional matrix adjust. Identities = 153/468 (32%), Positives = 250/468 (53%), Gaps = 44/468 (9%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFN+L K++A+V + PG+TRDR+Y + G F I+DT GI Sbjct: 6 VAIVGRPNVGKSTLFNKLAGKRIAIVEDKPGVTRDRIYASSEWVGQEFTIIDTGGIEPKS 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + I QM Q +AI A++I+F++D K+G+T D + LRK I++ NK+D+ Sbjct: 66 DDIILAQMRRQALIAIETANVIIFIVDGKSGLTDTDREVAQMLRKSKKSIVLAVNKVDSI 125 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + N +E Y+L + V ISA LG ++ ++ FK I N++ +EE Sbjct: 126 KEEENKFEFYNLGLGDPVAISASQGLGLGDMLDMVVDNFKD---------ISNDEASEEY 176 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 ++IA++G+PNVGKS+LIN+LLG R + + G TRD++ Sbjct: 177 -------------------IKIAMIGKPNVGKSSLINKLLGEERNIVSNIPGTTRDAIDS 217 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + DTAG+R+ S++ E +E+ +V +++ ++ + I++LDAT +QD Sbjct: 218 PLETEIGKFMLIDTAGLRRKSKVKEEIERYSVIRTLTAIERADVCILMLDATEELSEQDE 277 Query: 305 RIVDSVFNTGHAVVLALNKWDMVS--DKL--NLLQDLRTKAIKNLPQIGDIYINTISGRT 360 +I+ A+++ +NKWD++ DK DLR K + + ++I+ +SG+ Sbjct: 278 KIIGYAHELNKAIMVIVNKWDLIEKDDKTMKKFTDDLRFK-LSFMNYAPYLFISALSGQR 336 Query: 361 GEGLDDLMVSVLEINKL----WKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQI 416 + VLE+ K + RI T LN + + L+ PP + ++ Y TQ+ Sbjct: 337 -------VHKVLELAKKCYDNYSKRIATGVLNDVISEAVLRQEPPVTHGKRLKIFYATQV 389 Query: 417 QSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 PP+F+ F + + SY+RYL N+LR NF G I+ F+ K Sbjct: 390 DVKPPTFVFFVNDSSALHYSYERYLNNQLRENFDFEGTGIKTIFRERK 437 >gi|284991408|ref|YP_003409962.1| ribosome-associated GTPase EngA [Geodermatophilus obscurus DSM 43160] gi|284064653|gb|ADB75591.1| ribosome-associated GTPase EngA [Geodermatophilus obscurus DSM 43160] Length = 447 Score = 255 bits (652), Expect = 9e-66, Method: Compositional matrix adjust. Identities = 148/457 (32%), Positives = 232/457 (50%), Gaps = 32/457 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL NR + ++ AVV + PG+TRDR+ +A+ NG F +VDT G D + Sbjct: 11 VAIVGRPNVGKSTLVNRFLGRRAAVVQDTPGVTRDRIAYEALWNGKRFTVVDTGGW-DPR 69 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + Q E A+ A +I+F++DS+ G T D A LR+ + P+I+V+NK+D Sbjct: 70 ASGLGASITRQAEYAMKTADVIVFVVDSQVGATDTDLAAARILRRSDRPVILVANKVDDE 129 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 ++ N E++SL E +SA H + +L ++ + P P E E Sbjct: 130 RSESNAAELWSLGLGEPQPVSALHGRASGDLLDLVL----EAVPEAPREQEEEG------ 179 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P R+A+VGRPNVGKS+L+NRL R + S +G T D V Sbjct: 180 -----------------GPRRVALVGRPNVGKSSLLNRLAKDERSVVDSVAGTTVDPVDS 222 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 DTAG+R+ +E ++ +++ E +VLL A +QD Sbjct: 223 IVTLGGEEWRFVDTAGLRRKVNTASGMEYYASLRTEAAIQAAEVAVVLLAADEVVSEQDQ 282 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 R++ V G A+V+A NKWD + + + L + ++L ++ IS TG G+ Sbjct: 283 RVITQVIEAGRALVIAFNKWDTLDE--DRRHQLEREIERDLARVKWASRVNISALTGRGV 340 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 D L + E W+TR+ T+ LN++++ + PPP R ++KY+TQ PP F+ Sbjct: 341 DKLAQHLREALASWETRVPTAELNTYVRALVQETPPPARGGRAPKIKYLTQADVRPPRFV 400 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 +F T + Y+R+L +LR F G PI + + Sbjct: 401 VFST--GFLEAGYRRFLERKLRERFGFHGTPIEISVK 435 >gi|317051076|ref|YP_004112192.1| ribosome-associated GTPase EngA [Desulfurispirillum indicum S5] gi|316946160|gb|ADU65636.1| ribosome-associated GTPase EngA [Desulfurispirillum indicum S5] Length = 457 Score = 255 bits (652), Expect = 9e-66, Method: Compositional matrix adjust. Identities = 151/465 (32%), Positives = 250/465 (53%), Gaps = 34/465 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI-ADG 63 + I+G PNVGKSTLFNR+ KK++A+V + PG+TRDR Y F IVDT G ++ Sbjct: 7 VCIIGRPNVGKSTLFNRIAKKRIAIVEDIPGVTRDRNYHDVEWEDKEFTIVDTGGFESET 66 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 S+ M +QT +A EA ++FL+D + G D AI LR+ P+ I NK+D Sbjct: 67 GKGSLEASMVEQTGIAAAEADRVIFLLDGQTGPIADDFAIMDMLRRHEKPVYIAVNKIDA 126 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 ++ + Y L E+ +SA H G +L + + F + +++ Sbjct: 127 PSHEKILLDFYQLGVDEVFPVSAAHGRGVDDLLDTVTEGFA-------------STAHQD 173 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 SP+E + S P+++A+VGRPNVGKS+L+N++ G NR++ G TRD++ Sbjct: 174 SPEE---------IDEDSIPIKVAIVGRPNVGKSSLVNKICGENRVVASEVPGTTRDTIH 224 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRI-TESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + + DTAG+R+ S+ +E+LE+ +V +S+ ++ I++LDAT Q Sbjct: 225 TPVRREGRDFILLDTAGIRRKSKAYSENLERYSVFRSITAIEEAHVVILMLDATEGITDQ 284 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGD----IYINTISG 358 DL++ + G +++A+NKWD+V+ + ++ K I++ + ++I+ +SG Sbjct: 285 DLKVASYAWEAGKPIIIAVNKWDLVAKETMTYREFE-KDIEHRFKFSTKPIILFISALSG 343 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLK--YITQI 416 + L DL S+ E + R+ T+ LN +Q ++ PP RLK Y+TQI Sbjct: 344 QRVVKLFDLARSLYEKTRF---RVNTNELNELIQSATAKHAPPAAHTGGKRLKFYYVTQI 400 Query: 417 QSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 P +IFC +P+ + SYKRYL N +R +SL +P+ + F+ Sbjct: 401 SRHPFIIVIFCNYPDSVHFSYKRYLTNVVREAYSLYNVPVILKFR 445 >gi|224476594|ref|YP_002634200.1| GTP-binding protein EngA [Staphylococcus carnosus subsp. carnosus TM300] gi|254783167|sp|B9DNV9|DER_STACT RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|222421201|emb|CAL28015.1| putative GTP-binding protein [Staphylococcus carnosus subsp. carnosus TM300] Length = 436 Score = 255 bits (652), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 144/455 (31%), Positives = 246/455 (54%), Gaps = 29/455 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST+FNR+V +++++V + PG+TRDR+Y FN++DT GI + Sbjct: 6 VAIVGRPNVGKSTIFNRIVGERVSIVEDTPGVTRDRIYSSGEWLTHDFNVIDTGGI-ELT 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + Q+ Q E+AI+EA +I+F+++ + G+T D I L K N P+++ NK+D Sbjct: 65 DAPFQTQIRAQAEIAIDEADVIIFMVNQREGLTQTDEMIAQMLYKTNKPVVLAVNKVDNP 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + Y+ Y+L F E IS H LG +L L+ + NN ++EE Sbjct: 125 EMRTDIYDFYALGFGEPFPISGSHGLGLGDL----------------LDEVANNFKDEED 168 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 + + ++++++GRPNVGKS+L+N +LG +R++ + +G TRD++ Sbjct: 169 DDYDEDT------------IKLSLIGRPNVGKSSLVNAILGEDRVIVSNIAGTTRDAIDT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 +++++ + DTAGMRK ++ ES E+ +V ++++++ +V+LDA +QD Sbjct: 217 EYSYEDQDYVLIDTAGMRKKGKVYESTEKYSVLRALKAIERSNVVLVVLDAEEGIIEQDK 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 R+ G AVV+ +NKWD + ++ K + + I +S + + L Sbjct: 277 RVAGYAHEEGKAVVIVVNKWDTLDKDSKTMKKFEDKIRQEFQFLDYAPIAFVSAKEKQRL 336 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 L + E ++ K R+ +S LN + NP PT R ++ Y TQ+ PP+F+ Sbjct: 337 RTLFPLIKEASENHKKRVQSSTLNEVITDAISMNPTPTDKGRRLKVFYATQVAVEPPTFV 396 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 +F + SYKRYL N++R F G PIR+ Sbjct: 397 VFVNDAELMHFSYKRYLENQIRDAFGFEGTPIRII 431 >gi|167836401|ref|ZP_02463284.1| GTP-binding protein EngA [Burkholderia thailandensis MSMB43] Length = 445 Score = 255 bits (652), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 159/469 (33%), Positives = 240/469 (51%), Gaps = 32/469 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+ + + +VDT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGARPYLVVDTGGFEPVA 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I +M QT A+ EA +++F++D + G+ P D +I +LRK PI +V NK + Sbjct: 65 KDGILHEMARQTRQAVEEADVVVFIVDGRNGLAPQDKSIADYLRKTGRPIFLVVNKAEGM 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + Y L + ISA H G +++ I + + Y P E Sbjct: 125 KYTAVASDFYELGLGDPRAISAAHGDGVTDM---INEALEVAYAGQP-----------EE 170 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 +E+ + G +IA+VGRPNVGKSTL+N L+G +R++ G TRDS+ + Sbjct: 171 SEEDAAARGT----------KIAIVGRPNVGKSTLVNTLIGEDRVIAFDMPGTTRDSIYV 220 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + DTAG+R+ ++ E++E+ +V K++QS+ I+LLDA QD Sbjct: 221 DFERNGKQYTLIDTAGLRRRGKVFEAIEKFSVVKTLQSISDANVVILLLDAQQDISDQDA 280 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKA--IKNLPQIGDIYINTISGRTGE 362 I V G A+V+ +NKWD + + RTKA + L + + IS Sbjct: 281 HIAGFVVEQGRALVVGVNKWDGLDPHVR----ERTKADLARKLKFLDFAKFHFISAAEKT 336 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWL-QKTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 G+ LM SV + ++ T L L + + Q P R +L+Y Q +PP Sbjct: 337 GIGALMRSVDDAYAAAMKKLPTPKLTRALIEAVEFQQPRRRGPVR-PKLRYAHQGGQNPP 395 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +I + + E+YKRYL NR R FSL+G P+R+ F+SS NPY K Sbjct: 396 IIVIHGNALDAVTETYKRYLENRFRETFSLTGTPLRIEFRSSTNPYADK 444 >gi|161723167|ref|YP_442759.2| GTP-binding protein EngA [Burkholderia thailandensis E264] gi|167581710|ref|ZP_02374584.1| GTP-binding protein EngA [Burkholderia thailandensis TXDOH] gi|167619826|ref|ZP_02388457.1| GTP-binding protein EngA [Burkholderia thailandensis Bt4] gi|257138969|ref|ZP_05587231.1| GTP-binding protein EngA [Burkholderia thailandensis E264] Length = 445 Score = 255 bits (652), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 158/469 (33%), Positives = 241/469 (51%), Gaps = 32/469 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+ + + +VDT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGARPYLVVDTGGFEPVA 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I +M QT A+ EA +++F++D + G+ P D +I +LRK PI +V NK + Sbjct: 65 KDGILHEMARQTRQAVEEADVVVFIVDGRNGLAPQDKSIADYLRKTGRPIFLVVNKAEGM 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + Y L + ISA H G +++ I + + Y P E Sbjct: 125 KYTAVASDFYELGLGDPRAISAAHGDGVTDM---INEALEVAYAGQP-----------EE 170 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 +E+ + G ++IA+VGRPNVGKSTL+N L+G +R++ G TRDS+ + Sbjct: 171 SEEDAAARG----------IKIAIVGRPNVGKSTLVNTLIGEDRVIAFDMPGTTRDSIYV 220 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + DTAG+R+ ++ E++E+ +V K++QS+ I+LLDA QD Sbjct: 221 DFERNGKQYTLIDTAGLRRRGKVFEAIEKFSVVKTLQSISDANVVILLLDAQQDISDQDA 280 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKA--IKNLPQIGDIYINTISGRTGE 362 I V G A+V+ +NKWD + + RTKA + L + + IS Sbjct: 281 HIAGFVVEQGRALVVGVNKWDGLDPHVR----ERTKADLARKLKFLEFAKFHFISAAEKT 336 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLN-SWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 G+ LM SV + ++ T L + + + Q P R +L+Y Q +PP Sbjct: 337 GIGALMRSVDDAYAAAMKKLPTPKLTRALIDAVEFQQPRRRGPVR-PKLRYAHQGGQNPP 395 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +I + + E+YKRYL NR R FSL+G P+R+ F+SS NPY K Sbjct: 396 IIVIHGNALDAVTETYKRYLENRFRETFSLTGTPLRIEFRSSTNPYADK 444 >gi|326336190|ref|ZP_08202362.1| ribosome-associated GTPase EngA [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325691699|gb|EGD33666.1| ribosome-associated GTPase EngA [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 434 Score = 255 bits (652), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 148/462 (32%), Positives = 236/462 (51%), Gaps = 29/462 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +AIVG PNVGKST FNRLV+++ A+V + G+TRDR YG+ NG F+++DT G Sbjct: 1 MSAIVAIVGRPNVGKSTFFNRLVQRREAIVDSISGVTRDRHYGKTDWNGRDFSVIDTGGY 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 G + K+++ Q LAI EA I+FL D ++GI D I LR+ P + NK Sbjct: 61 VAGGDDVFQKEIDKQVNLAIEEADAIIFLTDVESGIMSTDEEIAQLLRRSKKPTFLAVNK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D + E Y+L F+E+ IS+ + GT EL + K+ ++ Sbjct: 121 VDNTKRAMDANEFYALGFEELFPISSVNGSGTGELLDAVVKVLPEE-------------- 166 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 + + P R AVVGRPN GKS+ IN L+G R + +G TRD Sbjct: 167 --------------EKEEETTLP-RFAVVGRPNAGKSSFINALIGEERYIVTDIAGTTRD 211 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 ++ +N + DTAG+R+ +++ E LE +V +S++++ + ++L+DAT FE Sbjct: 212 AIDTRYNRFGFEFNLVDTAGIRRKAKVKEDLEFYSVMRSVRAIEHSDVCLLLVDATRGFE 271 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 QD I VV+ +NKWD+V + + K + D+ I IS T Sbjct: 272 GQDANIFWLAQRNKKGVVILVNKWDLVEKDTHTTKHFEEGIRKIIAPFTDVPIIFISALT 331 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 + + + +E+ + RI TS LN ++ PPP +Y ++KY Q+ ++ Sbjct: 332 KQRIYKAIEKAVEVYQNRSQRIKTSELNEYMLPIIEATPPPATKGKYIKIKYCMQLPTNL 391 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 P F+ F P I + Y+R++ N+LR F+ G+P+ + F+ Sbjct: 392 PQFVFFANLPQYIKDPYRRFVENKLREKFNFEGVPLDIFFRE 433 >gi|51246791|ref|YP_066675.1| GTP-binding protein (EngA) [Desulfotalea psychrophila LSv54] gi|50877828|emb|CAG37668.1| Probable GTP-binding protein (EngA) [Desulfotalea psychrophila LSv54] Length = 446 Score = 255 bits (652), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 142/458 (31%), Positives = 239/458 (52%), Gaps = 28/458 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTLFNR+ K + A+V PG+TRDR Y + + N +VDT GI D Sbjct: 9 VALVGRPNVGKSTLFNRITKSRNALVDPTPGVTRDRQYERVVWNNRAMILVDTGGIDDNP 68 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + DQ AI EA ++LFL+D + G+TP D+ + LR+ P+ V NK+D Sbjct: 69 EDVLVPHIRDQALAAIEEADIVLFLMDGREGLTPADYEVVDILRRAKKPVYHVINKIDGP 128 Query: 125 IAQRNFY-EIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + Y L + + +SA+H G + L + E IE + +++ Sbjct: 129 EKELELLCPFYELGVETLWSLSADHTFGFNTLMDALS------------ETIEASTMSQD 176 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 P + ++A GRPNVGKS++INR+LG +R++ SG TRDSV Sbjct: 177 LPDGTV---------------KVAFFGRPNVGKSSMINRILGEDRMIVSEISGTTRDSVD 221 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 N+ + DTAG+R+ + TE LE+ ++ KS+ ++ C+ ++L+DA +QD Sbjct: 222 TLLTHGNYSYLLIDTAGIRRKGKTTEKLEKFSILKSLGALERCDVAVILIDADEGITEQD 281 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 +++ + G +++ +NKWD++ ++ + + LP IG + T+S +G G Sbjct: 282 TKVIGYALDQGRGLIILVNKWDLLEGDKKRQDEVLAEVGRQLPFIGFAPLLTVSALSGFG 341 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 + L + + + + + +TS +N L++ + PP N+ + Y +QI + PP F Sbjct: 342 IKRLFPVIGSVYRQYSAQFSTSTINRLLREAVTVHAPPIYKNKRLKFYYSSQIGTCPPKF 401 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 +I + SY+R+L NR R L +PI++ F+ Sbjct: 402 VIMSNSSKGVHFSYQRFLSNRYREGLGLDKVPIQLIFK 439 >gi|304372871|ref|YP_003856080.1| Predicted GTPase protein [Mycoplasma hyorhinis HUB-1] gi|304309062|gb|ADM21542.1| Predicted GTPase protein [Mycoplasma hyorhinis HUB-1] Length = 433 Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 154/462 (33%), Positives = 251/462 (54%), Gaps = 37/462 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A++G PNVGKSTLFN+LV KK++++ + PG+TRDR+Y + G F ++DT GI + + Sbjct: 5 VALIGKPNVGKSTLFNKLVGKKVSIIHDSPGVTRDRIYSKVEWAGKEFYLIDTGGI-EIE 63 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N S +Q+ QT++AI EA+LI+FL+D + I DH + LRK + ++I +NK++ Sbjct: 64 NKSFQEQIRIQTQIAIEEANLIIFLVDGRVEIDSDDHFVIDLLRKSSKKVLIAANKLEGN 123 Query: 125 IAQRNFYE--IYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 F++ IYSL F+ I ISA H G +L E I + + Sbjct: 124 ----KFFDTSIYSLGFEHIFPISAIHGEGVGDLLD---------------ETIRSLDFTK 164 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 E KEN + R+A++G+PN GKSTL+N+L NR + +G TRDSV Sbjct: 165 E--KEN-------------EAFRLAIIGKPNAGKSTLLNKLANENRSIVSPIAGTTRDSV 209 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 S EI DTAG+ + S+I +S++ + ++ S+ + +++L+DAT Sbjct: 210 SSFIKIDKIDFEIIDTAGIIRKSKIAQSVDFYALLRAFNSLDDAQLSLILIDATQELSHF 269 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D R+ F ++L +NKWD++ + N K +N + I IS +TG Sbjct: 270 DARLAGYAFEKQKPIILVVNKWDLIEKETNTQHIFMKKIKQNYKFLDWAPICFISAQTGS 329 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 + L ++LE+ +++T+ LN ++ Q+ PPP++ + +K+ QIQ++ P Sbjct: 330 RISKLRETILEVKNNLDKKVSTNALNQFILDIQMLQPPPSVRGKKLNIKFAQQIQANIPI 389 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 FL F N I SY+RY+ N+ R F SG PI++ +++ K Sbjct: 390 FLFFVNDKNLIHFSYQRYIENQFRNYFGFSGCPIKIIYKNKK 431 Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 54/173 (31%), Positives = 88/173 (50%), Gaps = 15/173 (8%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + +AI+G PN GKSTL N+L + ++V G TRD + I+ + F I+DTAGI Sbjct: 171 FRLAIIGKPNAGKSTLLNKLANENRSIVSPIAGTTRDSVSSFIKIDKIDFEIIDTAGII- 229 Query: 63 GKNCSIAKQMNDQTEL----AINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVS 118 + IA+ ++ L ++++A L L LID+ ++ +D + + +K PII+V Sbjct: 230 -RKSKIAQSVDFYALLRAFNSLDDAQLSLILIDATQELSHFDARLAGYAFEKQKPIILVV 288 Query: 119 NKMDTRIAQRNFYEIYS---------LDFKEIVEISAEHDLGTSELHSVIFKI 162 NK D + N I+ LD+ I ISA+ S+L I ++ Sbjct: 289 NKWDLIEKETNTQHIFMKKIKQNYKFLDWAPICFISAQTGSRISKLRETILEV 341 >gi|325106044|ref|YP_004275698.1| ribosome-associated GTPase EngA [Pedobacter saltans DSM 12145] gi|324974892|gb|ADY53876.1| ribosome-associated GTPase EngA [Pedobacter saltans DSM 12145] Length = 433 Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 151/457 (33%), Positives = 234/457 (51%), Gaps = 30/457 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL+NRL + + A+V + G+TRDR YG A F ++DT G Sbjct: 5 VAIVGRPNVGKSTLYNRLTETRKAIVDDMSGVTRDRHYGLAEWTDKTFTVIDTGGYVANS 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +Q +AI EA I+F++D GIT D I LR+ P+ + +NK+D Sbjct: 65 EDIFEIAIREQVLIAIEEATAIIFMVDVTTGITDLDDDIAGILRRSKKPVFVTANKVDNN 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + YS EI +S+ GT EL + K F + E I+N E Sbjct: 125 MLLAEAAQFYSFGLGEIYSLSSMTGSGTGELLDDVIKTFDET------EEIQN-----EL 173 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P A+VGRPNVGKS++IN LLG +R + + +G TRDS+ I Sbjct: 174 P-------------------VYAIVGRPNVGKSSMINALLGKDRNIVTNVAGTTRDSIHI 214 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + H + DTAG+RK +++ E++E +V +++ ++ + I++LDAT E QD+ Sbjct: 215 HYKQFGHDFMLVDTAGLRKKTKVRENIEFYSVMRTIGALEEADVIILMLDATEGIESQDI 274 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 I +VL +NKWD+V + K + + D+ I S + + Sbjct: 275 NIFHLAEKNRKGLVLVVNKWDLVEKDHKTAKAFEQKINEKIAPFTDVPIIFTSVTEKQRI 334 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 ++ + ++ K +I+TS LN +L PPP ++ ++KYITQI +S P F Sbjct: 335 FKVLEAAQKVYDNRKKKISTSKLNDFLLPIIENTPPPATKGKHIKIKYITQISASTPMFA 394 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 FC P I + YKR+L N+LR F +G+PI++ F+ Sbjct: 395 FFCNLPQYIKDPYKRFLENKLREQFDFTGVPIQLFFR 431 >gi|330723544|gb|AEC45914.1| GTP-binding protein Der [Mycoplasma hyorhinis MCLD] Length = 433 Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 154/462 (33%), Positives = 251/462 (54%), Gaps = 37/462 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A++G PNVGKSTLFN+LV KK++++ + PG+TRDR+Y + G F ++DT GI + + Sbjct: 5 VALIGKPNVGKSTLFNKLVGKKVSIIHDSPGVTRDRIYSKVEWAGKEFYLIDTGGI-EIE 63 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N S +Q+ QT++AI EA+LI+FL+D + I DH + LRK + ++I +NK++ Sbjct: 64 NKSFQEQIRIQTQIAIEEANLIIFLVDGRVEIDSDDHFVIDLLRKSSKKVLIAANKLEGN 123 Query: 125 IAQRNFYE--IYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 F++ IYSL F+ I ISA H G +L E I + + Sbjct: 124 ----KFFDTSIYSLGFEHIFPISAIHGEGVGDLLD---------------ETIRSLDFTK 164 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 E KEN + R+A++G+PN GKSTL+N+L NR + +G TRDSV Sbjct: 165 E--KEN-------------EAFRLAIIGKPNAGKSTLLNKLANENRSIVSPIAGTTRDSV 209 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 S EI DTAG+ + S+I +S++ + ++ S+ + +++L+DAT Sbjct: 210 SSFIKIDKIDFEIIDTAGIIRKSKIAQSVDFYALLRAFNSLDDAQLSLILIDATQELSHF 269 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D R+ F ++L +NKWD++ + N K +N + I IS +TG Sbjct: 270 DARLAGYAFEKQKPIILVVNKWDLIEKETNTQHIFMKKMKQNYKFLDWAPICFISAQTGS 329 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 + L ++LE+ +++T+ LN ++ Q+ PPP++ + +K+ QIQ++ P Sbjct: 330 RISKLRETILEVKNNLDKKVSTNALNQFILDIQMLQPPPSVRGKKLNIKFAQQIQANIPI 389 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 FL F N I SY+RY+ N+ R F SG PI++ +++ K Sbjct: 390 FLFFVNDKNLIHFSYQRYIENQFRNYFGFSGCPIKIIYKNKK 431 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 54/173 (31%), Positives = 88/173 (50%), Gaps = 15/173 (8%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + +AI+G PN GKSTL N+L + ++V G TRD + I+ + F I+DTAGI Sbjct: 171 FRLAIIGKPNAGKSTLLNKLANENRSIVSPIAGTTRDSVSSFIKIDKIDFEIIDTAGII- 229 Query: 63 GKNCSIAKQMNDQTEL----AINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVS 118 + IA+ ++ L ++++A L L LID+ ++ +D + + +K PII+V Sbjct: 230 -RKSKIAQSVDFYALLRAFNSLDDAQLSLILIDATQELSHFDARLAGYAFEKQKPIILVV 288 Query: 119 NKMDTRIAQRNFYEIYS---------LDFKEIVEISAEHDLGTSELHSVIFKI 162 NK D + N I+ LD+ I ISA+ S+L I ++ Sbjct: 289 NKWDLIEKETNTQHIFMKKMKQNYKFLDWAPICFISAQTGSRISKLRETILEV 341 >gi|239827511|ref|YP_002950135.1| GTP-binding protein EngA [Geobacillus sp. WCH70] gi|259645879|sp|C5D3F4|DER_GEOSW RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|239807804|gb|ACS24869.1| small GTP-binding protein [Geobacillus sp. WCH70] Length = 436 Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 143/461 (31%), Positives = 244/461 (52%), Gaps = 29/461 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 +AIVG PNVGKST+FNR+V +++++V + PG+TRDR+Y A F ++DT GI G Sbjct: 5 VVAIVGRPNVGKSTIFNRIVGERISIVEDVPGVTRDRIYSSAEWLNHKFYLIDTGGIDIG 64 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + Q+ Q E+AI+EA +I+F+++ + G+T D + L + N P+++ NK+D Sbjct: 65 DEPLLV-QIRQQAEIAIDEADVIIFMVNGRDGVTAADEEVAKILHRSNKPVVLAVNKIDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + Y+ Y+L F + IS H G +L + + F KR +E Sbjct: 124 PEMRDLIYDFYALGFGDPYPISGSHGTGLGDLLDAVARHFP--------------KRGQE 169 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 +E++ ++ ++GRPNVGKS+L+N +LG R++ +G TRD+V Sbjct: 170 EYEEDV--------------IKFCLIGRPNVGKSSLVNAILGEERVIVSDIAGTTRDAVD 215 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 ++ + I DTAGMRK +I ES E+ +V ++++++ + +V+L+A +QD Sbjct: 216 TTFVREGQEYVIIDTAGMRKRGKIYESTEKYSVLRALKAIERSDVVLVVLNAEEGIIEQD 275 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 +I G V++ +NKWD + L + K + P + I +S +T + Sbjct: 276 KKIAGYAHEAGRGVIIVVNKWDAIEKDDKTLIEFERKIRDHFPFLDYAPIIFVSAKTKQR 335 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 L L+ V +++ R+ T+ LN + NP PT R ++ Y+TQ+ PP+F Sbjct: 336 LHKLLPLVRMVSENHAMRVQTNVLNEVIMDAVAMNPTPTHNGRRLKIYYMTQVAVKPPTF 395 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 ++F P + SY+R+L NR+R F G PI++ + K Sbjct: 396 VVFVNDPELMHFSYERFLENRIRDAFGFEGTPIKIIARPRK 436 >gi|229494892|ref|ZP_04388645.1| ribosome-associated GTPase EngA [Rhodococcus erythropolis SK121] gi|229318250|gb|EEN84118.1| ribosome-associated GTPase EngA [Rhodococcus erythropolis SK121] Length = 475 Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 154/463 (33%), Positives = 240/463 (51%), Gaps = 38/463 (8%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI- 60 + T+A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ +A G F + DT G Sbjct: 38 VPTLAVVGRPNVGKSTLVNRIIGRREAVVEDIPGVTRDRVSYEANWAGRRFLVQDTGGWE 97 Query: 61 --ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVS 118 A G ++A+Q ELA+ A IL ++D+ G T D A+ LR+ P+I+V+ Sbjct: 98 PDAKGLQQAVARQ----AELAMGTADAILLVVDAVVGATATDEAVARVLRRSKTPVILVA 153 Query: 119 NKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 NK+D + ++SL + +SA H GT +L + +K P Sbjct: 154 NKVDDGRTESEVAALWSLGLGQPYSVSATHGRGTGDLLDEVL----EKLP---------- 199 Query: 179 KRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 E+P+E I G P R+A+VG+PNVGKS+L+N+L G R + + +G T Sbjct: 200 ----ETPREGIPGGG---------PRRVALVGKPNVGKSSLLNKLSGDERSVVHNVAGTT 246 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 D V P DTAG+RK E ++ ++ E I+L+DA P Sbjct: 247 VDPVDSIVELGGRPWRFVDTAGLRKRVSHASGAEFYASLRTKSAIEAAEVAILLIDAHEP 306 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 +QDLR++ V +TG A+V+A NKWD+V + L+ D + ++L ++ IS Sbjct: 307 ITEQDLRVLSMVADTGRALVIAFNKWDLVDEDRRLMLD--KEVDRDLVRVPWAQRVNISA 364 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 TG + L+ ++ + W RI T LN+WL++ PPP R R+ + TQ + Sbjct: 365 HTGRAVAKLVPALDTALESWDKRIPTGRLNTWLKEVVAATPPPMRGGRLPRIMFATQAST 424 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 PP+F++F T + Y+R++ RLR F+ G PIR+ + Sbjct: 425 RPPTFVLFTT--GFLEAGYRRFIERRLREEFNFDGSPIRVSVR 465 >gi|237708020|ref|ZP_04538501.1| GTP-binding protein EngA [Bacteroides sp. 9_1_42FAA] gi|265754193|ref|ZP_06089382.1| ribosome-associated GTPase EngA [Bacteroides sp. 3_1_33FAA] gi|229458006|gb|EEO63727.1| GTP-binding protein EngA [Bacteroides sp. 9_1_42FAA] gi|263234902|gb|EEZ20457.1| ribosome-associated GTPase EngA [Bacteroides sp. 3_1_33FAA] Length = 437 Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 160/456 (35%), Positives = 241/456 (52%), Gaps = 30/456 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNRL K + A+V G TRDR YG++ G F++VDT G Sbjct: 5 VAIVGRPNVGKSTLFNRLTKTRQAIVNEQAGTTRDRQYGKSEWVGHEFSVVDTGGWVVNS 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +++ Q LAI+EA +ILF++D G+T D A+ S LR+ P+I+V+NK D Sbjct: 65 GDVFEEEIRKQVSLAIDEADVILFVVDVVNGVTDLDMAVASILRRTKKPVIMVANKTDNN 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 Q N E Y L + ISA GT EL ++ F +K EE Sbjct: 125 ELQYNAAEFYKLGLGDPYCISALSGSGTGELLDLVVGKF--------------SKEGEEL 170 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 E+I R AVVGRPN GKS++IN +G +R + +G TRDS+ Sbjct: 171 LDEDIP--------------RFAVVGRPNAGKSSIINAFIGEDRNIVTEIAGTTRDSIYT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + DTAG+RK +++ E LE +V +S++S+ + I++LDA+ E QDL Sbjct: 217 RYEKFGFDFYLVDTAGIRKKNKVNEDLEYYSVIRSIRSIENSDVCILMLDASRGIEGQDL 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKN-LPQIGDIYINTISGRTGEG 363 I + +V+ +NKWD+V +K + +AI++ L D I S T + Sbjct: 277 NIFSLIQRNQKGLVVVVNKWDLVENKDAKVMKTYEEAIRSRLAPFVDFPIIFASALTKQR 336 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP-PS 422 + ++ + E+ + TRI T+ LN + PPP+ +Y ++KY TQ+ ++ PS Sbjct: 337 IFKVLETAKEVYQARTTRIPTARLNEEMLPLIEAYPPPSNKGKYIKIKYCTQLPNTQVPS 396 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 F+ F P + E YKR+L N++R ++LSG PI + Sbjct: 397 FVFFANLPQYVKEPYKRFLENKIREKWNLSGTPINI 432 >gi|254449216|ref|ZP_05062665.1| GTP-binding protein EngA [gamma proteobacterium HTCC5015] gi|198261193|gb|EDY85489.1| GTP-binding protein EngA [gamma proteobacterium HTCC5015] Length = 472 Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 156/466 (33%), Positives = 250/466 (53%), Gaps = 33/466 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTLFN L + + A+V + PG+TRDR YG + + +VDT G++ + Sbjct: 5 IAIVGRPNVGKSTLFNCLTRTRDALVADMPGLTRDRKYGNGKLGDRAYVVVDTGGLSTDQ 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + M Q + A++EA ++LF++DS+ GI P D I +RKK P+ +V+NKMD Sbjct: 65 D-EMDNLMASQAQQAMDEADILLFMVDSREGINPIDENIAREIRKKGKPVFLVANKMDGC 123 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + Y L E + I+A H+ G +HS+I +F + P+H E I + + ++ Sbjct: 124 DPDVIRADFYQLGLGEPLTIAASHNRG---VHSLIETLF-ETLPDHFDEEIPDKEHDDS- 178 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 +RIAVVGRPNVGKSTLINR+LG R+L G TRDS+ + Sbjct: 179 -------------------VRIAVVGRPNVGKSTLINRILGETRVLAYDAPGTTRDSIFV 219 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + + DTAG+RK +I E++E+ +V K++Q++ + ++DA +QDL Sbjct: 220 PFESELGRYTLIDTAGVRKRGKIHETVEKFSVVKALQAIAEAHVVLQVIDARRGVAEQDL 279 Query: 305 RIVDSVFNTGHAVVLALNKWDMVS--DKLNLLQDL-RTKAIKNLPQIGDIYINTISGRTG 361 ++ V + G A+V +NKWD +S ++ + +DL R + P+ + IS G Sbjct: 280 TLLREVLHQGSALVFVINKWDGLSPEERDFIKEDLSRRLNFISFPE-----FHFISALHG 334 Query: 362 EGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 G+ ++ +V ++ T L L++ + + PP + +L+Y Q +PP Sbjct: 335 TGVGHILEAVNRAYDSAMIKLGTKQLTDVLEEATVAHQPPLVGRYRTKLRYAHQGGKNPP 394 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 ++ + SYKRYL N L+G P+ + F+S KNPY Sbjct: 395 RIVVHGNRVEHLSNSYKRYLNNHFMKRLKLTGTPLHIEFRSGKNPY 440 >gi|160931619|ref|ZP_02079014.1| hypothetical protein CLOLEP_00451 [Clostridium leptum DSM 753] gi|156869490|gb|EDO62862.1| hypothetical protein CLOLEP_00451 [Clostridium leptum DSM 753] Length = 440 Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 143/456 (31%), Positives = 235/456 (51%), Gaps = 31/456 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFN+L+ +++A+V + PG+TRDR+YG+ +VDT GI Sbjct: 6 VAIVGRPNVGKSTLFNKLIGQRVAIVNDTPGVTRDRIYGECEWRSRKVTLVDTGGIEPYS 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + I QM Q ELAI+ A +I+ + D K G+ D + + L K P+++ NK D Sbjct: 66 DDVILSQMRRQAELAIDTADVIVLVTDVKTGVVATDSEVAAMLLKSGRPVVLCVNKCDG- 124 Query: 125 IAQ--RNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 I + FYE Y+L + +++S+ H GT +L +F+ Sbjct: 125 IGEPPAEFYEFYNLGLGDPIQVSSVHGHGTGDLLDAVFE--------------------- 163 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 ++ + + +R+AV+G+PN GKS+LIN++ G +R + +G TRD++ Sbjct: 164 -------HLPEEAEEEEGLENIRVAVIGKPNAGKSSLINQIAGEDRCIVSDIAGTTRDAI 216 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + DTAG+R+ SR+ + +E+ +V ++ ++ + ++++DAT F +Q Sbjct: 217 DTQIENDYGRFTLIDTAGIRRKSRVDDEIEKYSVIRAQMAIDRSDVCVIMIDATEGFTEQ 276 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D ++ G V+A+NKWD V +Q+ R K + + + IS +TG+ Sbjct: 277 DSKVAGLAHEAGKGCVIAVNKWDAVEKDGRTMQEYRKKLEVDFSFMAYAPMVFISAKTGQ 336 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 LD L + + RITT LN L + + PPT + ++ Y+TQ + PP+ Sbjct: 337 RLDQLFELIQRVANFNAMRITTGMLNDVLAQATARVQPPTDKGKRLKIYYMTQASTKPPT 396 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 F+ F SY+RYL NR+R F + G PIR Sbjct: 397 FVCFVNRAELFHFSYQRYLENRIRETFGMEGTPIRF 432 >gi|298246134|ref|ZP_06969940.1| ribosome-associated GTPase EngA [Ktedonobacter racemifer DSM 44963] gi|297553615|gb|EFH87480.1| ribosome-associated GTPase EngA [Ktedonobacter racemifer DSM 44963] Length = 474 Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 152/487 (31%), Positives = 257/487 (52%), Gaps = 55/487 (11%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA--- 61 +AIVG PNVGKST FNR++ +++A+V + PG TRDRLYG A NG F ++DT G+ Sbjct: 5 VAIVGRPNVGKSTFFNRMIGERVAIVEDMPGTTRDRLYGDADWNGREFTLIDTGGLELGT 64 Query: 62 ---------DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNI 112 G++ I + Q +LAI EA +I+F++D+++GIT D + LR++ Sbjct: 65 GIPVGQVGLTGQSGDIMDHVMSQAQLAIEEADVIVFMVDARSGITAADDEVADLLRRRAT 124 Query: 113 -PIIIVSNKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHP 171 P+I+ +NK D + + E YSL E +IS+ GT +L I + P Sbjct: 125 KPVILAANKADNAERRLDVVEFYSLGLGEPTDISSIQGTGTGDLLDRIVEAL-------P 177 Query: 172 LEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLT 231 E+ ++++P RIA+VGRPNVGKS+L+N +LG NR + Sbjct: 178 PFSEEDEAEDDQTP-------------------RIAIVGRPNVGKSSLLNAILGVNRSIV 218 Query: 232 GSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIV 291 G TRD++ + + I++ DTAG+R+ R+ +E+ +V +S +++ C+ ++ Sbjct: 219 SDIPGTTRDAIDTELEFGDQKIKLVDTAGIRRRGRVGVGVEKYSVLRSTRAIERCDVALM 278 Query: 292 LLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDK---------------LNLLQD 336 L+DA+ QD I ++ G V++ +NKWD+ ++ ++ + Sbjct: 279 LIDASEGLTAQDTHIAGTIHEMGKGVIVVVNKWDLAQEQHKAEREGEFPKPDEEIDDAER 338 Query: 337 LRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQL 396 R I+ L I I S +TG + ++ + L+I+ + R+ T+ LN +Q+ + Sbjct: 339 YRKMLIRELKFIPYAPIIFASAKTGYHVKSILETALKISDMRYLRVPTARLNEVVQEAKR 398 Query: 397 QNPPPTIFN-RYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIP 455 + P + + R+ Y TQI+ +PP+F+ F P + SY+R++ NRLR FS G Sbjct: 399 RQTPAYVTGMKPLRVYYATQIRVNPPTFVFFVNDPRSVHFSYERFMENRLREAFSFKGTG 458 Query: 456 IRMCFQS 462 IR+ F++ Sbjct: 459 IRIYFRA 465 >gi|268608007|ref|ZP_06141738.1| small GTP-binding protein [Ruminococcus flavefaciens FD-1] Length = 442 Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 143/455 (31%), Positives = 238/455 (52%), Gaps = 29/455 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTLFN+L+ +++++V + PG+TRDR+Y + G F +VDT GI Sbjct: 6 VAVVGRPNVGKSTLFNKLIGQRLSIVEDTPGVTRDRIYSKCEWRGKEFMVVDTGGIEPDS 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 + I QM Q+ELAI +A +I+F+ D + G+T D+ + L K PI++ NK+D Sbjct: 66 DDVILSQMRRQSELAIEKADVIVFVTDIRCGVTADDYTVAQMLLKSGKPIVLAVNKVDNL 125 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 YE Y+L + IS+ H GT ++ +++ +EE Sbjct: 126 GEPPLELYEFYNLGLGDPFPISSVHGHGTGDMLDKVYEYLPAS--------------DEE 171 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 ++ +++AV+G+PN GKS+LIN++ G R++ +G TRDS Sbjct: 172 EYDDDC--------------IKVAVIGKPNAGKSSLINKIAGEERVIVSDIAGTTRDSTD 217 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + DTAG+RK S++TE +E +V ++ +V + +++LDAT F +QD Sbjct: 218 TVIENEQGKFVFIDTAGIRKKSKVTEKIEHYSVLRAYMAVDRADVCVIMLDATEGFTEQD 277 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 ++ G A V+A+NKWD++ +Q+ RTK + + + IS +TG+ Sbjct: 278 SKVAGYAHEQGKACVVAVNKWDLIEKDDKTMQEFRTKLENDFSFMSYVPFVFISAKTGQR 337 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 ++ L + + RI+T LN L + PP+ R ++ Y+TQ + PP+F Sbjct: 338 INKLYELIKYTYEQNSMRISTGMLNDVLAYATTRVQPPSDKGRRLKIYYMTQPSTKPPTF 397 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 + F + SY+RY+ N++R F L G P+R Sbjct: 398 VTFVNRADLFHFSYRRYIENQIRSTFGLEGTPVRF 432 >gi|146308511|ref|YP_001188976.1| GTP-binding protein EngA [Pseudomonas mendocina ymp] gi|166225842|sp|A4XY28|DER_PSEMY RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|145576712|gb|ABP86244.1| small GTP-binding protein [Pseudomonas mendocina ymp] Length = 492 Score = 254 bits (650), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 156/467 (33%), Positives = 246/467 (52%), Gaps = 9/467 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ IA+VG PNVGKSTLFNRL + + A+VG+ G+TRDR YG+A G + ++DT GI Sbjct: 1 MVPVIALVGRPNVGKSTLFNRLTRSRDAIVGDLSGLTRDRQYGEAKWQGRTYIVIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + G I +M +Q+ AI EA +LFL+D++AG+T D I LR++N +V NK Sbjct: 61 S-GDEEGIDAKMAEQSLQAIEEADAVLFLVDARAGMTASDQMIGEHLRRRNKRSFLVVNK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D E + E + I+ H G +++ + IF + + Sbjct: 120 VDNLDVDLARAEFSPMGLGEPLAIAGAHGRGITQMLEAVLGIFPKDAGEPEEGAEAEEEV 179 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 E + I G S I ++A++GRPNVGKSTL+NR+LG R++ Q+G TRD Sbjct: 180 QEGQEAKRIP--GPSEKDGI----KLAIIGRPNVGKSTLVNRMLGEERVIVYDQAGTTRD 233 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ I + + + DTAG+R+ +I E++E+ +V K++Q+++ + ++DA Sbjct: 234 SIYIPFERDDEKYTLIDTAGVRRRGKIFEAVEKFSVVKTLQAIQDSNVVVFVMDAREGVV 293 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 DL ++ V +G A+V+ALNKWD + ++T+ + L + I+ IS Sbjct: 294 DHDLNLLGFVLESGRALVIALNKWDGMDQGQK--DYVKTELERRLFFVDFADIHFISALH 351 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G G+ L SV TR TS L L+ + PP + R +L+Y ++P Sbjct: 352 GTGVGHLYKSVQAAFHSAVTRWPTSRLTQILEDAVSDHAPPLVNGRRIKLRYAHLGGANP 411 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 P +I + +P +Y RYL N R L G PIR+ ++ +NPY Sbjct: 412 PLIVIHGNQVDAVPRAYTRYLENTFRRVLKLVGTPIRIEYKGGENPY 458 >gi|83652896|gb|ABC36959.1| GTPase family protein [Burkholderia thailandensis E264] Length = 460 Score = 254 bits (650), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 159/469 (33%), Positives = 240/469 (51%), Gaps = 32/469 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+ + + +VDT G Sbjct: 20 IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGARPYLVVDTGGFEPVA 79 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I +M QT A+ EA +++F++D + G+ P D +I +LRK PI +V NK + Sbjct: 80 KDGILHEMARQTRQAVEEADVVVFIVDGRNGLAPQDKSIADYLRKTGRPIFLVVNKAEGM 139 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + Y L + ISA H G +++ I + + Y P E Sbjct: 140 KYTAVASDFYELGLGDPRAISAAHGDGVTDM---INEALEVAYAGQP-----------EE 185 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 +E+ + G ++IA+VGRPNVGKSTL+N L+G +R++ G TRDS+ + Sbjct: 186 SEEDAAARG----------IKIAIVGRPNVGKSTLVNTLIGEDRVIAFDMPGTTRDSIYV 235 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + DTAG+R+ ++ E++E+ +V K++QS+ I+LLDA QD Sbjct: 236 DFERNGKQYTLIDTAGLRRRGKVFEAIEKFSVVKTLQSISDANVVILLLDAQQDISDQDA 295 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKA--IKNLPQIGDIYINTISGRTGE 362 I V G A+V+ +NKWD + + RTKA + L + + IS Sbjct: 296 HIAGFVVEQGRALVVGVNKWDGLDPHVR----ERTKADLARKLKFLEFAKFHFISAAEKT 351 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWL-QKTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 G+ LM SV + ++ T L L + Q P R +L+Y Q +PP Sbjct: 352 GIGALMRSVDDAYAAAMKKLPTPKLTRALIDAVEFQQPRRRGPVR-PKLRYAHQGGQNPP 410 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +I + + E+YKRYL NR R FSL+G P+R+ F+SS NPY K Sbjct: 411 IIVIHGNALDAVTETYKRYLENRFRETFSLTGTPLRIEFRSSTNPYADK 459 >gi|313901830|ref|ZP_07835252.1| ribosome-associated GTPase EngA [Thermaerobacter subterraneus DSM 13965] gi|313467912|gb|EFR63404.1| ribosome-associated GTPase EngA [Thermaerobacter subterraneus DSM 13965] Length = 454 Score = 254 bits (650), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 142/462 (30%), Positives = 235/462 (50%), Gaps = 19/462 (4%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +AIVG PNVGKSTLFNR++++++A+ + PG+TRDRLY G F +VDT G+ Sbjct: 1 MKPVVAIVGRPNVGKSTLFNRIIERRLAIEDDVPGVTRDRLYADTDWAGREFTLVDTGGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 A+G + + Q+ Q E A+ EA L++ ++D +AG+TP D + LR+ P I+ NK Sbjct: 61 AEGDD-PLTVQVRRQVEAAVREADLLIMVVDGQAGVTPADEEVARLLRQSRKPTILAVNK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D Y+ + L E + ++A +L + + + P + + Sbjct: 120 VDDARWDGVQYDFFRLGLGEPIPVAAGPGRNVGDLLDAVVRGLPAPPADEPGDAGDRGPW 179 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 E T E + +A+VGRPNVGKS+L+NRLLG R++ G TRD Sbjct: 180 GE-------TGE-----------IAVAIVGRPNVGKSSLVNRLLGEERVVVSDIPGTTRD 221 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 +V + W DTAG+R+ SR+ + +E + ++ +++ + ++LDA P Sbjct: 222 AVDVLWRRGERVFRFIDTAGLRRKSRVKDDVEFYSTLRTQRALARADVACLVLDARDPAT 281 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 +QD RI + G A VLA+NKWD+V+ + R + + + +S T Sbjct: 282 EQDKRIAGMILEEGKACVLAVNKWDLVAKGPDTADQYREALYREYDFLQFAPVVFLSALT 341 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G+ +D L+ + + + R+ L L L + PP+ R R+ + Q+ P Sbjct: 342 GQRVDRLVEVLAGAAENHRRRVPEPVLRKVLDDALLVHEPPSRKGRRLRIHRVRQVAERP 401 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 P+FL P + S++R+L N LR F +G P+R+ F++ Sbjct: 402 PTFLFLVNDPEIVHFSFERFLENVLRQAFDFTGTPVRLIFRA 443 >gi|320159766|ref|YP_004172990.1| GTP-binding protein EngA [Anaerolinea thermophila UNI-1] gi|319993619|dbj|BAJ62390.1| GTP-binding protein EngA [Anaerolinea thermophila UNI-1] Length = 455 Score = 254 bits (650), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 157/476 (32%), Positives = 246/476 (51%), Gaps = 48/476 (10%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI---- 60 +A+VG PNVGKSTLFNRL + +A+V + PG TRDRL+ A +GV F+IVDT GI Sbjct: 6 VALVGRPNVGKSTLFNRLAGEPLAIVDDIPGTTRDRLFATAEWSGVEFDIVDTGGIDPSA 65 Query: 61 --ADGKNCSIA-----KQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKN-- 111 A + SI K++ Q ELAI +A ILFL+D+ +G+TP D + LR+K Sbjct: 66 ARAGREPLSIGSAEFIKEIRSQAELAIQDADAILFLVDAISGLTPADREVAQILRRKQQM 125 Query: 112 ------IPIIIVSNKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQ 165 P+ +V NK D+ + E Y L E ISA H GT +L Sbjct: 126 VDGKPYPPVFLVVNKADSANLRAVASEFYELGMGEPYPISALHGTGTGDLLD-------- 177 Query: 166 KYPNHPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLG 225 ++I + + EE+ +++ SVK IA+VG+PN GKS+L+NRL+G Sbjct: 178 -------DLIASLPKVEEAGEDD-------SVK-------IAIVGKPNAGKSSLLNRLVG 216 Query: 226 YNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRT 285 R + G TRD+V + PI + DTAG+R+ +I +E+ +V +S++++ Sbjct: 217 EERAIVSPIPGTTRDAVDTRIEYNGVPITLIDTAGIRRRGKIEPGVEKYSVLRSLRAIER 276 Query: 286 CETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNL 345 + ++++DAT QD I + + V+ +NKWD V + + + + L Sbjct: 277 SDVALLMIDATTGITAQDTHIAGFILEAWKSAVVLVNKWDAVEKDSHTMAEYTARLRHEL 336 Query: 346 PQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFN 405 + + I IS +TG+ +D ++ L + + R+ T +N +Q+ Q ++ P Sbjct: 337 NFMDYVPILFISAKTGQRVDQVLPLALRVQEERLARLNTGTINRLIQEAQERHAPVVRGG 396 Query: 406 RYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 R + Y TQ++S PP+FL+FC P SY R+L N R + +G PIR + Sbjct: 397 RSLHIYYGTQVRSDPPTFLLFCNDPKLAHFSYLRFLENVFRKEYPFTGTPIRFVLK 452 >gi|307244110|ref|ZP_07526228.1| ribosome-associated GTPase EngA [Peptostreptococcus stomatis DSM 17678] gi|306492481|gb|EFM64516.1| ribosome-associated GTPase EngA [Peptostreptococcus stomatis DSM 17678] Length = 442 Score = 254 bits (650), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 141/460 (30%), Positives = 246/460 (53%), Gaps = 28/460 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKST+FN+L K+++V + PG+TRDR++G+ F I+DT GI Sbjct: 9 VAVVGRPNVGKSTIFNKLTGTKISIVEDTPGVTRDRIFGEVEWLNKYFTIIDTGGIEPES 68 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + I QM +Q LA++ AH+ILF++D K+G+T D + LR+ P+++V NK+D++ Sbjct: 69 DDIILSQMRNQAMLAVDMAHVILFVVDGKSGLTAADKEVADILRRTKKPVLLVVNKIDSK 128 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 N Y+ Y L + IS + +G +L E++EN Sbjct: 129 SQFDNVYDFYELGLGNPIAISGANSMGLGDLLD---------------EVVENFP----- 168 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 E + +E V +R+A+ G+PN GKS+++N +LG R++ +G TRD++ Sbjct: 169 --EGMNTEYDEDV------IRVAITGKPNAGKSSILNNILGEERVIVSPIAGTTRDAIDT 220 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + ++ + DTAG+R+ S++ E++E+ +V +SM +V + ++++DAT +QD Sbjct: 221 YFEKDDNKFLLIDTAGIRRRSKVYENVERFSVIRSMSAVDRADVVLIVIDATEGVTEQDT 280 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 +I + G A + +NKWD++ + + R + P + I +S + + + Sbjct: 281 KIAGIAHDEGKACIFVVNKWDLIEKDNKTMGNFRMSVREKFPFMTYAPILFVSAVSNQRI 340 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 ++ +V++++ R+TTS LN + + + N PP+ R ++ Y TQ PP+F Sbjct: 341 GKILETVVQVSAEQNKRVTTSVLNQVIGEAIMLNQPPSDKGRRLKIYYGTQTGVKPPTFN 400 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 +F SY RYL NRLR NF G I++ + K Sbjct: 401 LFINDKELTHFSYTRYLENRLRENFGFEGTSIKIEYSQKK 440 >gi|212690523|ref|ZP_03298651.1| hypothetical protein BACDOR_00005 [Bacteroides dorei DSM 17855] gi|212666872|gb|EEB27444.1| hypothetical protein BACDOR_00005 [Bacteroides dorei DSM 17855] Length = 455 Score = 254 bits (650), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 160/454 (35%), Positives = 240/454 (52%), Gaps = 30/454 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNRL K + A+V G TRDR YG++ G F++VDT G Sbjct: 23 VAIVGRPNVGKSTLFNRLTKTRQAIVNEQAGTTRDRQYGKSEWVGHEFSVVDTGGWVVNS 82 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +++ Q LAI+EA +ILF++D G+T D A+ S LR+ P+I+V+NK D Sbjct: 83 GDVFEEEIRKQVSLAIDEADVILFVVDVVNGVTDLDMAVASILRRTKKPVIMVANKTDNN 142 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 Q N E Y L + ISA GT EL ++ F +K EE Sbjct: 143 ELQYNAAEFYKLGLGDPYCISALSGSGTGELLDLVVGKF--------------SKEGEEL 188 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 E+I R AVVGRPN GKS++IN +G +R + +G TRDS+ Sbjct: 189 LDEDIP--------------RFAVVGRPNAGKSSIINAFIGEDRNIVTEIAGTTRDSIYT 234 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + DTAG+RK +++ E LE +V +S++S+ + I++LDA+ E QDL Sbjct: 235 RYEKFGFDFYLVDTAGIRKKNKVNEDLEYYSVIRSIRSIENSDVCILMLDASRGIEGQDL 294 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKN-LPQIGDIYINTISGRTGEG 363 I + +V+ +NKWD+V +K + +AI++ L D I S T + Sbjct: 295 NIFSLIQRNQKGLVVVVNKWDLVENKDAKVMKTYEEAIRSRLAPFVDFPIIFASALTKQR 354 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP-PS 422 + ++ + E+ + TRI T+ LN + PPP+ +Y ++KY TQ+ ++ PS Sbjct: 355 IFKVLETAKEVYQARTTRIPTARLNEEMLPLIEAYPPPSNKGKYIKIKYCTQLPNTQVPS 414 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 F+ F P + E YKR+L N++R ++LSG PI Sbjct: 415 FVFFANLPQYVKEPYKRFLENKIREKWNLSGTPI 448 >gi|296269475|ref|YP_003652107.1| small GTP-binding protein [Thermobispora bispora DSM 43833] gi|296092262|gb|ADG88214.1| small GTP-binding protein [Thermobispora bispora DSM 43833] Length = 476 Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 152/459 (33%), Positives = 241/459 (52%), Gaps = 35/459 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ +A G F +VDT G D Sbjct: 41 VAVVGRPNVGKSTLVNRILGRRAAVVEDVPGVTRDRVAYEASWQGRRFTLVDTGGW-DPD 99 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +A ++ +Q ++A A ++LF++D+ G+T D A+ S LR+ P+++V+NK D + Sbjct: 100 ATGMALRIAEQAQVAAELADVVLFVVDATVGVTDADEAVGSVLRRSGKPVLLVANKADNQ 159 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + ++SL E ISA H GT +L + P P Sbjct: 160 QVELEATALWSLGLGEPYPISALHGRGTGDLLDAMLDAL----PTPP------------- 202 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P+E G P R+A+VGRPNVGKS+L+NR+ G R+L G TRD V Sbjct: 203 PQEAGAPRG---------PRRVALVGRPNVGKSSLLNRMAGEERVLVDPMPGTTRDPVDE 253 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 DTAG+R+ R + + ++ ++ E +VL+DA+ P +QDL Sbjct: 254 LIELGGKTYRFVDTAGIRRRDRELKGADFYAAMRTRSALERSEAAVVLIDASEPLTEQDL 313 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSD--KLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 RI+ V +G A+VLA NKWD++ + + L +++ K ++ P I +N IS +TG Sbjct: 314 RIISLVAESGRAMVLAFNKWDLLDEERRYYLEKEIDRKLVRT-PWA--IRVN-ISAKTGR 369 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 ++ L ++ + W TRI T+ LN ++ PPP + ++ ++TQ PP+ Sbjct: 370 HVEKLGPAIDRALESWGTRIPTARLNQFIGDQVRATPPPVRGGKQPKILFVTQASIEPPT 429 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 F+ F T + E+Y+R+L R+R F G PI M + Sbjct: 430 FVFFTT--GFLEETYRRFLERRIREEFGFVGSPIHMVMK 466 >gi|53719151|ref|YP_108137.1| GTP-binding protein EngA [Burkholderia pseudomallei K96243] gi|124383522|ref|YP_001026075.1| GTP-binding protein EngA [Burkholderia mallei NCTC 10229] gi|126439512|ref|YP_001059220.1| GTP-binding protein EngA [Burkholderia pseudomallei 668] gi|126449445|ref|YP_001080656.1| GTP-binding protein EngA [Burkholderia mallei NCTC 10247] gi|126454834|ref|YP_001066487.1| GTP-binding protein EngA [Burkholderia pseudomallei 1106a] gi|161579520|ref|YP_103001.2| GTP-binding protein EngA [Burkholderia mallei ATCC 23344] gi|162210023|ref|YP_333745.2| GTP-binding protein EngA [Burkholderia pseudomallei 1710b] gi|167719273|ref|ZP_02402509.1| GTP-binding protein EngA [Burkholderia pseudomallei DM98] gi|167738270|ref|ZP_02411044.1| GTP-binding protein EngA [Burkholderia pseudomallei 14] gi|167815459|ref|ZP_02447139.1| GTP-binding protein EngA [Burkholderia pseudomallei 91] gi|167823871|ref|ZP_02455342.1| GTP-binding protein EngA [Burkholderia pseudomallei 9] gi|167845410|ref|ZP_02470918.1| GTP-binding protein EngA [Burkholderia pseudomallei B7210] gi|167902402|ref|ZP_02489607.1| GTP-binding protein EngA [Burkholderia pseudomallei NCTC 13177] gi|167910644|ref|ZP_02497735.1| GTP-binding protein EngA [Burkholderia pseudomallei 112] gi|167918673|ref|ZP_02505764.1| GTP-binding protein EngA [Burkholderia pseudomallei BCC215] gi|254177966|ref|ZP_04884621.1| GTPase family protein [Burkholderia mallei ATCC 10399] gi|254189054|ref|ZP_04895565.1| GTP-binding protein EngA [Burkholderia pseudomallei Pasteur 52237] gi|254259698|ref|ZP_04950752.1| ribosome-associated GTPase EngA [Burkholderia pseudomallei 1710a] gi|254297432|ref|ZP_04964885.1| GTP-binding protein EngA [Burkholderia pseudomallei 406e] gi|254358306|ref|ZP_04974579.1| GTP-binding protein EngA [Burkholderia mallei 2002721280] gi|81824774|sp|Q63US9|DER_BURPS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|166224313|sp|A3MK70|DER_BURM7 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|166224314|sp|A2S2A6|DER_BURM9 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|166224315|sp|A3NVW6|DER_BURP0 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|166224316|sp|A3NA49|DER_BURP6 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|52209565|emb|CAH35518.1| putative GTPase [Burkholderia pseudomallei K96243] gi|124291542|gb|ABN00811.1| ribosome-associated GTPase EngA [Burkholderia mallei NCTC 10229] gi|126219005|gb|ABN82511.1| ribosome-associated GTPase EngA [Burkholderia pseudomallei 668] gi|126228476|gb|ABN92016.1| ribosome-associated GTPase EngA [Burkholderia pseudomallei 1106a] gi|126242315|gb|ABO05408.1| ribosome-associated GTPase EngA [Burkholderia mallei NCTC 10247] gi|148027433|gb|EDK85454.1| GTP-binding protein EngA [Burkholderia mallei 2002721280] gi|157808014|gb|EDO85184.1| GTP-binding protein EngA [Burkholderia pseudomallei 406e] gi|157936733|gb|EDO92403.1| GTP-binding protein EngA [Burkholderia pseudomallei Pasteur 52237] gi|160699005|gb|EDP88975.1| GTPase family protein [Burkholderia mallei ATCC 10399] gi|254218387|gb|EET07771.1| ribosome-associated GTPase EngA [Burkholderia pseudomallei 1710a] Length = 445 Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 160/469 (34%), Positives = 241/469 (51%), Gaps = 32/469 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+ + + +VDT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGARPYLVVDTGGFEPVA 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I +M QT A+ EA +++F++D + G+ P D +I +LRK PI +V NK + Sbjct: 65 KDGILHEMARQTRQAVEEADVVVFIVDGRNGLAPQDKSIADYLRKTGRPIFLVVNKAEGM 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + Y L + ISA H G +++ I + + Y P E Sbjct: 125 KYTAVASDFYELGLGDPRAISAAHGDGVNDM---INEALEVAYAGEPQE----------- 170 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 SE ++ + I +IA+VGRPNVGKSTL+N L+G +R++ G TRDS+ + Sbjct: 171 ------SEEAAAARGI----KIAIVGRPNVGKSTLVNTLIGEDRVIAFDMPGTTRDSIYV 220 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + DTAG+R+ ++ E++E+ +V K++QS+ I+LLDA QD Sbjct: 221 DFERNGKHYTLIDTAGLRRRGKVFEAIEKFSVVKTLQSISDANVVILLLDARQDISDQDA 280 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKA--IKNLPQIGDIYINTISGRTGE 362 I V G A+V+ +NKWD + + RTKA + L + + IS Sbjct: 281 HIAGFVVEQGRALVVGVNKWDGLDPHVR----ERTKADLARKLKFLEFAKFHFISAAEKT 336 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWL-QKTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 G+ LM SV + ++ T L L + + Q P R +L+Y Q +PP Sbjct: 337 GIGALMRSVDDAYAAAMKKLPTPKLTRALIEAVEFQQPRRRGPVR-PKLRYAHQGGQNPP 395 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +I + + E+YKRYL NR R FSL+G P+R+ F+SS NPY K Sbjct: 396 IIVIHGNALDAVTETYKRYLENRFRETFSLTGTPLRIEFRSSTNPYADK 444 >gi|226306741|ref|YP_002766701.1| GTP-binding protein EngA [Rhodococcus erythropolis PR4] gi|226185858|dbj|BAH33962.1| probable GTP-binding protein EngA [Rhodococcus erythropolis PR4] Length = 475 Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 154/463 (33%), Positives = 240/463 (51%), Gaps = 38/463 (8%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI- 60 + T+A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ +A G F + DT G Sbjct: 38 VPTLAVVGRPNVGKSTLVNRIIGRREAVVEDIPGVTRDRVSYEANWAGRRFLVQDTGGWE 97 Query: 61 --ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVS 118 A G ++A+Q ELA+ A IL ++D+ G T D A+ LR+ P+I+V+ Sbjct: 98 PDAKGLQQAVARQ----AELAMGTADAILLVVDAVVGATTTDEAVARVLRRSKTPVILVA 153 Query: 119 NKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 NK+D + ++SL + +SA H GT +L + +K P Sbjct: 154 NKVDDGRTESEVAALWSLGLGQPYSVSATHGRGTGDLLDEVL----EKLP---------- 199 Query: 179 KRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 E+P+E I G P R+A+VG+PNVGKS+L+N+L G R + + +G T Sbjct: 200 ----ETPREGIPGGG---------PRRVALVGKPNVGKSSLLNKLSGDERSVVHNVAGTT 246 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 D V P DTAG+RK E ++ ++ E I+L+DA P Sbjct: 247 VDPVDSIVELGGRPWRFVDTAGLRKRVSHASGAEFYASLRTKSAIEAAEVAILLIDAHEP 306 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 +QDLR++ V +TG A+V+A NKWD+V + L+ D + ++L ++ IS Sbjct: 307 ITEQDLRVLSMVADTGRALVIAFNKWDLVDEDRRLMLD--KEVDRDLVRVPWAQRVNISA 364 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 TG + L+ ++ + W RI T LN+WL++ PPP R R+ + TQ + Sbjct: 365 HTGRAVAKLVPALDTALESWDKRIPTGRLNTWLKEVVAATPPPMRGGRLPRIMFATQAST 424 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 PP+F++F T + Y+R++ RLR F+ G PIR+ + Sbjct: 425 RPPTFVLFTT--GFLEAGYRRFIERRLREEFNFDGSPIRVSVR 465 >gi|311739376|ref|ZP_07713211.1| ribosome-associated GTPase EngA [Corynebacterium pseudogenitalium ATCC 33035] gi|311305192|gb|EFQ81260.1| ribosome-associated GTPase EngA [Corynebacterium pseudogenitalium ATCC 33035] Length = 526 Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 150/462 (32%), Positives = 243/462 (52%), Gaps = 40/462 (8%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI- 60 + T+A+VG PNVGKS+L NR + ++ AVV +HPG+TRDR+ A NG F + DT G Sbjct: 90 LCTVAVVGRPNVGKSSLVNRFLGRREAVVEDHPGVTRDRISYVADWNGQRFLVQDTGGWD 149 Query: 61 --ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVS 118 G + +IA+Q E+A+ A +I+ ++D+K GIT D + L+K +P+I+VS Sbjct: 150 PNVKGIHAAIARQ----AEVAMETADVIVMVVDTKVGITETDEVMARRLQKSPVPVILVS 205 Query: 119 NKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 NK D+ + E Y+L + +SA+H G +++ I ++F Sbjct: 206 NKFDSDNQYADMAEFYALGLGDPWPVSAQHGRGGADVLDEILRVFP-------------- 251 Query: 179 KRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 E P++ + G P R+A+VG+PNVGKS+L+N+L R + + +G T Sbjct: 252 ----EEPRQTAITSG---------PRRVALVGKPNVGKSSLLNKLTSEERSVVDNVAGTT 298 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 D V + + DTAG+RK + + E ++ + E I+L+DA+ Sbjct: 299 VDPVDSLVQLDDQLWKFIDTAGLRKKVKNAQGHEYYASLRTRGVIDAAEVCIMLIDASEE 358 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWD-MVSDKLNLLQDLRTKAIKNLPQIGDIYINTIS 357 +QD R+++ V G A+V+A NKWD M D+ L + + +LP + + I+ + Sbjct: 359 ISEQDQRVLNMVLEAGKALVIAFNKWDLMDEDRRYYLDREIDQQLSHLPWVTRVNISAET 418 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 GR + L+ M+ LE W R++T LN+WL++ NPPP NR R+ + TQ Sbjct: 419 GRALQKLEPAMIEALES---WDQRVSTGQLNNWLREAIAANPPPMKNNRLPRVLFATQAS 475 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 + PP+ ++F T + +Y+RYL + R F G PIR+ Sbjct: 476 TQPPTIVLFTT--GFLDAAYRRYLERKFRERFGFHGTPIRIA 515 >gi|295426288|ref|ZP_06818948.1| ribosome-associated GTPase EngA [Lactobacillus amylolyticus DSM 11664] gi|295064027|gb|EFG54975.1| ribosome-associated GTPase EngA [Lactobacillus amylolyticus DSM 11664] Length = 436 Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 146/464 (31%), Positives = 251/464 (54%), Gaps = 35/464 (7%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA-- 61 +AIVG PNVGKSTLFNR++K+++A+V + PG+TRDR Y QA G F+++DT GI Sbjct: 5 VVAIVGRPNVGKSTLFNRIIKERLAIVEDEPGVTRDRNYAQAEWMGHNFDLIDTGGITWE 64 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 DGK I +++ Q E+AI+EA +I+ L G+T D + L + PII+ NK Sbjct: 65 DGK---IEEEIRAQAEIAIDEADVIVMLCSVVNGVTDLDERVAQLLYRTKKPIILAINKA 121 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D + Y+ YSL + + +S H G +L I K+P E +K++ Sbjct: 122 DNPELRAEVYDFYSLGLGDPIPVSGSHGTGIGDLLDKIV----SKFPR------ELDKKD 171 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 +++ + +V+GRPNVGKS+++N+LLG R++ +Q G TRD+ Sbjct: 172 KDT-------------------ISFSVIGRPNVGKSSIVNKLLGEKRVIVANQEGTTRDA 212 Query: 242 VSISWNWKNH-PIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 + + K+ + DTAG+R+ ++ E E+ +V +++ ++ + +++LDA+ Sbjct: 213 IDTPFIGKDGTKFRLIDTAGIRRRGKVYEKTEKYSVMRALSAIDRSDVALLVLDASTGIR 272 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 +QD + + G +++ +NKWD+ +D + + I +S +T Sbjct: 273 EQDKHVAGYAHDAGRGLIIVVNKWDIPKKDSGSGKDFEQVIRQEFQYLDYAPILFVSAKT 332 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G+ LD + V E+ K RI +S LN L + P P + + R+ Y+TQ++++P Sbjct: 333 GQRLDQIPEIVKEVYKNENQRIQSSVLNDLLLEASKLVPTPLVKGKRLRVYYMTQVKTNP 392 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 P+F++F P + SY+R+L+N+LR NF+ G PI++ + K Sbjct: 393 PTFVVFVNDPELMHFSYQRFLVNQLRENFNFEGTPIKIIPRKRK 436 >gi|229084606|ref|ZP_04216875.1| GTP-binding protein engA [Bacillus cereus Rock3-44] gi|228698682|gb|EEL51398.1| GTP-binding protein engA [Bacillus cereus Rock3-44] Length = 436 Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 144/455 (31%), Positives = 241/455 (52%), Gaps = 29/455 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST+FNR+V +++++V + PG+TRDR+Y FNI+DT GI G Sbjct: 6 VAIVGRPNVGKSTIFNRIVGERVSIVEDIPGVTRDRIYSAGEWLNHEFNIIDTGGIDIGD 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + Q+ Q E+AI+E+ +I+F+ + + G+T D + L + P+++ NK+D Sbjct: 66 EPFLT-QIRQQAEVAIDESDVIIFMTNGRDGVTAADEEVAKILYRSKKPVVLAVNKVDNP 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + Y+ Y+L F E IS H LG +L K F + IE ++E+ Sbjct: 125 EMRNDIYDFYALGFGEPFPISGTHGLGLGDLLDEAAKHFPK---------IEEEAYDDET 175 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 +R +++GRPNVGKS+L+N LLG R++ + +G TRD+V Sbjct: 176 -------------------IRFSLIGRPNVGKSSLVNALLGQERVIVSNVAGTTRDAVDT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 ++ I DTAGMRK ++ ES E+ +V ++++++ + +V+LD +QD Sbjct: 217 PYSKDGQDYVIIDTAGMRKKGKVYESTEKYSVLRALRAIERSDVVLVVLDGEEGIIEQDK 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 +I ++G AV++ +NKWD V ++ + + I +S +T + Sbjct: 277 KIAGYAHDSGRAVIIVVNKWDAVKKDEKTMKAFEENIRAHFQFLDYAPIVFLSAKTKKRT 336 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 L+ + E+N+ R+ T+ LN + NP PT + ++ Y TQ+ PP+F+ Sbjct: 337 QTLLPVINEVNESHSIRVQTNVLNDVIMDAVAMNPTPTHNGQRLKIFYATQVAVKPPTFV 396 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 +F P + SY+R+L NRLR +F G PIR+ Sbjct: 397 VFVNDPELMHFSYERFLKNRLRESFGFVGTPIRII 431 >gi|161485612|ref|YP_386558.2| GTP-binding protein EngA [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 455 Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 149/475 (31%), Positives = 253/475 (53%), Gaps = 41/475 (8%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ IA++G PNVGKSTLFNRL++ A+ + PG+TRDR+ G + F I+DT GI Sbjct: 1 MLPKIALIGRPNVGKSTLFNRLIRSNRAITHDRPGVTRDRMEGYVKVGDRKFIIIDTGGI 60 Query: 61 ADGKNCSIAKQMND----------QTELAINEAHLILFLIDSKAGITPYDHAITSFLRKK 110 ++ ++A+ ++ QTE AI ++ + ++D + G+TP+D ++ +++RK Sbjct: 61 TLDEHAAVAEGPDELRGFEAEILRQTEEAIADSVALCLVVDGREGLTPFDESLAAYVRKS 120 Query: 111 NIPIIIVSNKMD-TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPN 169 P+++ NK+D +A E ++L F ++ +S H +F + Sbjct: 121 GKPVLLAVNKVDGEEMADLYMAEFHTLGFP-VIPLSGAHGFNVRAFSGELFDLL------ 173 Query: 170 HPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRL 229 P E +E++P+E +PL++A++GRPN GKS+L+N L G R+ Sbjct: 174 -PPE-------DEDAPQEEE-----------ERPLKLAMLGRPNAGKSSLVNALSGSRRM 214 Query: 230 LTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETT 289 + +G TRDSV I+ DTAG+R+ ++I + +E+ +V S++S + T Sbjct: 215 IVSDVAGTTRDSVDIAVELGGRRYVFVDTAGVRRRAKIQDPVERYSVNSSLKSTTKADVT 274 Query: 290 IVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMV-SDKLNLLQDLRTKAIKNLPQI 348 +V+LDA +QD R++D + +L +NK D+V D L L+ L A+ + Sbjct: 275 LVVLDAVEGLTQQDKRLIDLLDERKTPFMLVINKIDLVPRDGLTALKRLYDDALTFCKHV 334 Query: 349 GDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYN 408 +Y IS R+G G+D L+ +INK R+ T LN L + ++ PP + Sbjct: 335 PIMY---ISARSGRGVDKLLPMARKINKECYVRVGTGLLNRTLTEAVTRHQPPVVKRVRP 391 Query: 409 RLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSS 463 + Y+TQ +++PP+F+ F +I ESY RYL +R F + P+R+ F+SS Sbjct: 392 KFFYLTQAETNPPTFVFFVNDHERIQESYARYLEKFMRKRFEIEHAPMRVRFRSS 446 >gi|282878065|ref|ZP_06286870.1| ribosome-associated GTPase EngA [Prevotella buccalis ATCC 35310] gi|281299805|gb|EFA92169.1| ribosome-associated GTPase EngA [Prevotella buccalis ATCC 35310] Length = 437 Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 154/458 (33%), Positives = 244/458 (53%), Gaps = 30/458 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +AIVG PNVGKSTLFNRL + + A+V + G TRDR YG+ NG F++VDT G Sbjct: 1 MAKLVAIVGRPNVGKSTLFNRLTQSRKAIVSDTAGTTRDRQYGKCSWNGREFSVVDTGGW 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + + Q +A EA L+LF++D K G+T +D + LR+ +P+I+V NK Sbjct: 61 VVNSDDVFEDAIRRQVIVATEEADLVLFMVDVKNGLTDWDADVAQILRRTKLPVILVGNK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D E Y L + ISA GT +L ++ +K P E +E Sbjct: 121 VDNSAEYYTAAEFYRLGLGDPQCISAATGGGTGDLLDLVL----EKLPADDKEALE---- 172 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 E+ P R AVVGRPN GKS+LIN +G +R + +G TRD Sbjct: 173 -EDIP-------------------RFAVVGRPNAGKSSLINAFIGEDRHIVTEIAGTTRD 212 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ ++ + DTAG+R+ S+++E LE +V +S++S+ + I+++DAT E Sbjct: 213 SIYTRFDKFGFDFYLVDTAGIRRKSKVSEDLEFYSVMRSIRSIENSDVCILMIDATRGIE 272 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKN-LPQIGDIYINTISGR 359 QD+ I + ++V+ +NKWD+V DK + + AI+ + D I S Sbjct: 273 SQDMNIFQLIQKNHKSLVVVVNKWDLVEDKDHKVIKTFENAIRERMAPFADFPIIFASAL 332 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 T + + ++ + ++ K RI TS LN + + PPP+I +Y ++KY TQ+ ++ Sbjct: 333 TKQRIFKVLETAKQVYLNRKLRIGTSKLNEVMLPIIEETPPPSIKGKYIKIKYCTQLPNT 392 Query: 420 P-PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 PSF+ + P + E+Y+R+L N++R N++L+G PI Sbjct: 393 QIPSFVFYANLPQYVKENYRRFLENKIRENWTLTGCPI 430 >gi|171463406|ref|YP_001797519.1| small GTP-binding protein [Polynucleobacter necessarius subsp. necessarius STIR1] gi|238689056|sp|B1XU78|DER_POLNS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|171192944|gb|ACB43905.1| small GTP-binding protein [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 454 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 151/470 (32%), Positives = 230/470 (48%), Gaps = 37/470 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 I IVG NVGKSTLFNRL + + A+V + G+TRDR YG+ I F VDT G Sbjct: 5 ITIVGRSNVGKSTLFNRLTRSRDALVADFSGLTRDRHYGKCRIGERAFICVDTGGFEPVA 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I +M QT+ + E+ +++FL+D + G+ P D I FLRK P+I+ NK + Sbjct: 65 KTGIVAEMAKQTKQVVAESDIVIFLVDGRLGMAPQDRVIADFLRKTGRPVILAVNKTEGM 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 A + + L E IS+ H G L P+ Sbjct: 125 QASVVTADFHELGLGEPFPISSAHGDGVRGLIDDALDSLGVAEPDE-------------- 170 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 V + ++P++IAVVGRPNVGKSTLIN+L+G R++ G TRD++ + Sbjct: 171 ---------DELVNDPNRPMKIAVVGRPNVGKSTLINKLIGEERVIAFDMPGTTRDAIEV 221 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + P + DTAG+R+ ++ E++E+ +V K++Q++ C I++LDA +QD Sbjct: 222 PFERNGKPYILVDTAGLRRRGKVFEAIEKFSVVKTLQAIADCNVVILMLDAQQDISEQDA 281 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSD------KLNLLQDLRTKAIKNLPQIGDIYINTISG 358 I + G A+V+A+NKWD + +L + Q LR N ++ IS Sbjct: 282 HIAGFIVEAGRALVVAVNKWDGIDTYVKERARLEIAQKLRFLDFAN--------VHPISA 333 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 + G GL DL V ++ L LQ+ P + +L+Y Q Sbjct: 334 KKGTGLKDLFKDVDAAYAAAMAKLPAPRLTRILQEAIEHQQPKRVGMGRPKLRYAHQGGM 393 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYI 468 +PP +I T + + +SYKRYL R + F L G P+R+ ++KNPY+ Sbjct: 394 NPPIVVIHGTSLSGVTDSYKRYLEGRFKDVFKLRGTPLRIQMNTAKNPYV 443 >gi|160890563|ref|ZP_02071566.1| hypothetical protein BACUNI_03006 [Bacteroides uniformis ATCC 8492] gi|270295703|ref|ZP_06201903.1| ribosome-associated GTPase EngA [Bacteroides sp. D20] gi|317479893|ref|ZP_07939009.1| ribosome-associated GTPase EngA [Bacteroides sp. 4_1_36] gi|156859562|gb|EDO52993.1| hypothetical protein BACUNI_03006 [Bacteroides uniformis ATCC 8492] gi|270273107|gb|EFA18969.1| ribosome-associated GTPase EngA [Bacteroides sp. D20] gi|316903940|gb|EFV25778.1| ribosome-associated GTPase EngA [Bacteroides sp. 4_1_36] Length = 437 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 155/454 (34%), Positives = 240/454 (52%), Gaps = 30/454 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNRL K + A+V G TRDR YG+ G F++VDT G Sbjct: 5 VAIVGRPNVGKSTLFNRLTKTRQAIVNEEAGTTRDRQYGKTEWLGREFSVVDTGGWVVNS 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +++ Q +A++EA +ILF++D G+T D + + LR+ P+++V+NK D Sbjct: 65 DDIFEEEIRKQVLMAVDEADVILFVVDVMNGVTDLDEQVAAILRRAKKPVLLVANKTDNH 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 Q N E YSL + ISA GT ++ +I FK K ++E Sbjct: 125 ELQYNAPEFYSLGLGDPYCISAVTGSGTGDMMDLIVSKFK--------------KESDEI 170 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 E+I R AVVGRPN GKS+++N +G +R + +G TRDS+ Sbjct: 171 LDEDIP--------------RFAVVGRPNAGKSSIVNAFIGEDRNIVTEIAGTTRDSIYT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 +N + DTAG+RK +++ E LE +V +S++S+ + I+++DAT E QDL Sbjct: 217 RYNKFGFDFYLVDTAGIRKKNKVNEDLEYYSVIRSIRSIENADVCILMVDATRGIESQDL 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKN-LPQIGDIYINTISGRTGEG 363 I + +V+ +NKWD+V DK + AI+N D I S T + Sbjct: 277 NIFSLIQKNAKGLVVVVNKWDLVKDKTVKVMKTFEDAIRNRFAPFVDFPIIFASALTKQR 336 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP-PS 422 + ++ ++ + TRI T+ LN + PPP+I +Y ++KYITQ+ ++ PS Sbjct: 337 ILKVLEEARDVYENRMTRIPTARLNEEMLPLIEAYPPPSIKGKYIKIKYITQLPNTQVPS 396 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 F+ F P + E Y+R+L N++R + L+G PI Sbjct: 397 FVYFANLPQYVKEPYRRFLENKMREKWKLTGTPI 430 >gi|323141760|ref|ZP_08076630.1| ribosome biogenesis GTPase Der [Phascolarctobacterium sp. YIT 12067] gi|322413749|gb|EFY04598.1| ribosome biogenesis GTPase Der [Phascolarctobacterium sp. YIT 12067] Length = 442 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 151/462 (32%), Positives = 244/462 (52%), Gaps = 34/462 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFN ++++V + PG+TRDRLY A F +VDT GI Sbjct: 6 VAIVGRPNVGKSTLFNIFANSRISIVEDTPGVTRDRLYATAEWLDHEFMMVDTGGIEIMN 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +IA + Q ++AI EA +ILF+ D++AGIT D + LR+ PI++ NK D+ Sbjct: 66 ADAIAVSIRQQAQIAIKEADVILFVCDARAGITTEDADVARLLRQSKKPIVLAVNKADSP 125 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + N +E Y+L + + +SA + LG +L + F P + + + E+ Sbjct: 126 KQEMNTFEFYNLGIGDPIAVSASNHLGLGDLLDAVVAKF-------PSDKMAGDLEEEDE 178 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 +++A++GRPNVGKS++ N L+G R + +G TRD++ Sbjct: 179 -------------------IKVALIGRPNVGKSSIFNALVGEERSIVSDIAGTTRDAIDT 219 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 DTAGMR+ +++ E +E+ +V +S+++V + +++ DA +QD Sbjct: 220 PVVRNGQKYLFIDTAGMRRKAKVDEPIEKYSVMRSLRAVDRSDVVLMVFDAVEGVTEQDK 279 Query: 305 RIVDSVFNTGHAVVLALNKWDMV----SDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 RIV G AV+L +NKWD+ S L + LR K + L ++++ ++ + Sbjct: 280 RIVGYAHEAGKAVILVVNKWDLYEKDNSSTLRYTETLR-KELVFLQYAPVVFVSAVTKQR 338 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 L +++ V E N + RI TS LN ++ NPPPT + ++ Y+TQ++ P Sbjct: 339 IHRLPEVISYVAEQNAM---RIATSILNQVIEDAVAINPPPTEKGKRLKILYVTQVKIKP 395 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 P+F+IF P + SY+RYL N+LR F G PI+M + Sbjct: 396 PTFVIFVNEPEIMHFSYQRYLENKLREAFGFEGTPIQMIIRG 437 >gi|121598397|ref|YP_993149.1| GTP-binding protein EngA [Burkholderia mallei SAVP1] gi|217421388|ref|ZP_03452892.1| ribosome-associated GTPase EngA [Burkholderia pseudomallei 576] gi|237812544|ref|YP_002896995.1| ribosome-associated GTPase EngA [Burkholderia pseudomallei MSHR346] gi|238563546|ref|ZP_00438709.2| ribosome-associated GTPase EngA [Burkholderia mallei GB8 horse 4] gi|242314802|ref|ZP_04813818.1| ribosome-associated GTPase EngA [Burkholderia pseudomallei 1106b] gi|251767656|ref|ZP_02268028.2| ribosome-associated GTPase EngA [Burkholderia mallei PRL-20] gi|254197870|ref|ZP_04904292.1| GTP-binding protein EngA [Burkholderia pseudomallei S13] gi|254199946|ref|ZP_04906312.1| GTP-binding protein EngA [Burkholderia mallei FMH] gi|254206279|ref|ZP_04912631.1| GTP-binding protein EngA [Burkholderia mallei JHU] gi|52426961|gb|AAU47554.1| GTPase family protein [Burkholderia mallei ATCC 23344] gi|76581515|gb|ABA50990.1| GTPase family protein [Burkholderia pseudomallei 1710b] gi|121227207|gb|ABM49725.1| GTPase family protein [Burkholderia mallei SAVP1] gi|147749542|gb|EDK56616.1| GTP-binding protein EngA [Burkholderia mallei FMH] gi|147753722|gb|EDK60787.1| GTP-binding protein EngA [Burkholderia mallei JHU] gi|169654611|gb|EDS87304.1| GTP-binding protein EngA [Burkholderia pseudomallei S13] gi|217395130|gb|EEC35148.1| ribosome-associated GTPase EngA [Burkholderia pseudomallei 576] gi|237503777|gb|ACQ96095.1| ribosome-associated GTPase EngA [Burkholderia pseudomallei MSHR346] gi|238520490|gb|EEP83949.1| ribosome-associated GTPase EngA [Burkholderia mallei GB8 horse 4] gi|242138041|gb|EES24443.1| ribosome-associated GTPase EngA [Burkholderia pseudomallei 1106b] gi|243062055|gb|EES44241.1| ribosome-associated GTPase EngA [Burkholderia mallei PRL-20] Length = 460 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 160/469 (34%), Positives = 241/469 (51%), Gaps = 32/469 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+ + + +VDT G Sbjct: 20 IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGARPYLVVDTGGFEPVA 79 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I +M QT A+ EA +++F++D + G+ P D +I +LRK PI +V NK + Sbjct: 80 KDGILHEMARQTRQAVEEADVVVFIVDGRNGLAPQDKSIADYLRKTGRPIFLVVNKAEGM 139 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + Y L + ISA H G +++ I + + Y P E Sbjct: 140 KYTAVASDFYELGLGDPRAISAAHGDGVNDM---INEALEVAYAGEPQE----------- 185 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 SE ++ + I +IA+VGRPNVGKSTL+N L+G +R++ G TRDS+ + Sbjct: 186 ------SEEAAAARGI----KIAIVGRPNVGKSTLVNTLIGEDRVIAFDMPGTTRDSIYV 235 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + DTAG+R+ ++ E++E+ +V K++QS+ I+LLDA QD Sbjct: 236 DFERNGKHYTLIDTAGLRRRGKVFEAIEKFSVVKTLQSISDANVVILLLDARQDISDQDA 295 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKA--IKNLPQIGDIYINTISGRTGE 362 I V G A+V+ +NKWD + + RTKA + L + + IS Sbjct: 296 HIAGFVVEQGRALVVGVNKWDGLDPHVR----ERTKADLARKLKFLEFAKFHFISAAEKT 351 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWL-QKTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 G+ LM SV + ++ T L L + + Q P R +L+Y Q +PP Sbjct: 352 GIGALMRSVDDAYAAAMKKLPTPKLTRALIEAVEFQQPRRRGPVR-PKLRYAHQGGQNPP 410 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +I + + E+YKRYL NR R FSL+G P+R+ F+SS NPY K Sbjct: 411 IIVIHGNALDAVTETYKRYLENRFRETFSLTGTPLRIEFRSSTNPYADK 459 >gi|254179556|ref|ZP_04886155.1| GTP-binding protein EngA [Burkholderia pseudomallei 1655] gi|184210096|gb|EDU07139.1| GTP-binding protein EngA [Burkholderia pseudomallei 1655] Length = 445 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 160/469 (34%), Positives = 241/469 (51%), Gaps = 32/469 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+ + + +VDT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGARPYLVVDTGGFEPVA 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I +M QT A+ EA +++F++D + G+ P D +I +LRK PI +V NK + Sbjct: 65 KDGILHEMARQTRQAVEEADVVVFIVDGRNGLAPQDKSIADYLRKTGRPIFLVVNKAEGM 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + Y L + ISA H G +++ I + + Y P E Sbjct: 125 KYTAVASDFYELGLGDPRAISATHGDGVNDM---INEALEVAYAGEPQE----------- 170 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 SE ++ + I +IA+VGRPNVGKSTL+N L+G +R++ G TRDS+ + Sbjct: 171 ------SEEAAAARGI----KIAIVGRPNVGKSTLVNTLIGEDRVIAFDMPGTTRDSIYV 220 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + DTAG+R+ ++ E++E+ +V K++QS+ I+LLDA QD Sbjct: 221 DFERNGKHYTLIDTAGLRRRGKVFEAIEKFSVVKTLQSISDANVVILLLDARQDISDQDA 280 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKA--IKNLPQIGDIYINTISGRTGE 362 I V G A+V+ +NKWD + + RTKA + L + + IS Sbjct: 281 HIAGFVVEQGRALVVGVNKWDGLDPHVR----ERTKADLARKLKFLEFAKFHFISAAEKT 336 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWL-QKTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 G+ LM SV + ++ T L L + + Q P R +L+Y Q +PP Sbjct: 337 GIGALMRSVDDAYAAAMKKLPTPKLTRALIEAVEFQQPRRRGPVR-PKLRYAHQGGQNPP 395 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +I + + E+YKRYL NR R FSL+G P+R+ F+SS NPY K Sbjct: 396 IIVIHGNALDAVTETYKRYLENRFRETFSLTGTPLRIEFRSSTNPYADK 444 >gi|332284650|ref|YP_004416561.1| GTP-binding protein [Pusillimonas sp. T7-7] gi|330428603|gb|AEC19937.1| GTP-binding protein [Pusillimonas sp. T7-7] Length = 478 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 149/473 (31%), Positives = 247/473 (52%), Gaps = 14/473 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG NVGKSTLFNR+ + + A+V + G+TRDR YG+ + F VDT G Sbjct: 10 VALVGRANVGKSTLFNRITRSRAALVADFSGLTRDRHYGEGRVGEHPFIAVDTGGFEPVA 69 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I +M QT+ AI E+ +++FL+D++AG+ +DH I LRK + + NK + Sbjct: 70 KDGILLEMARQTQQAIAESDVVIFLVDARAGVNAHDHEIARLLRKSGQRVFLAVNKAEGM 129 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 E + L E ISA H G EL + P+ + + ++ Sbjct: 130 RYGSATAEFHELGLGEPHAISASHGDGVVELIERALS-YMDDLPDAGTDDEPDFMPDDAE 188 Query: 185 PKENITSEGKSSVKN--------ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSG 236 P + ++G + ++ +S +++A+VGRPNVGKSTLIN LLG +R++ G Sbjct: 189 P---VLADGDLAEQDTNQEPEEPVSHRIKLAIVGRPNVGKSTLINTLLGEDRVIAFDMPG 245 Query: 237 ITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDAT 296 TRD++ I + + DTAG+R+ ++ E++E+ +V K++Q++ C +++LDA Sbjct: 246 TTRDAIEIEFERNGVSYTLIDTAGLRRRGKVFEAIEKFSVIKTLQAIEACNVVVLMLDAQ 305 Query: 297 IPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTI 356 QD I V TG A+V+A+NKWD + + + ++ + L + ++T+ Sbjct: 306 TEISDQDAHIAGFVLETGRALVVAINKWDGLDSEQR--ERIQRDFDRKLHFLSFAKMHTV 363 Query: 357 SGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQI 416 S G+G++ L+ SV + +++T L L Q PP +++Y Q Sbjct: 364 SALKGQGVNVLIKSVNAAHAAAFAKLSTPKLTRVLHAAVEQQQPPRKGIFRPKMRYAHQG 423 Query: 417 QSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIK 469 +PP +I + I +SY+RYL R R F L G P+R+ F+SS NPY++ Sbjct: 424 GQNPPLIIIHGNAIDAISDSYRRYLEGRFRSEFKLDGTPLRIEFKSSHNPYLQ 476 >gi|329897033|ref|ZP_08271805.1| GTP-binding protein EngA [gamma proteobacterium IMCC3088] gi|328921473|gb|EGG28859.1| GTP-binding protein EngA [gamma proteobacterium IMCC3088] Length = 463 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 142/467 (30%), Positives = 251/467 (53%), Gaps = 32/467 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA++G PNVGKSTLFN+L + + A+V + G+TRDR YG+ + + ++DT GI + Sbjct: 5 IALMGRPNVGKSTLFNQLTRSRDALVADFSGLTRDRKYGEGKVGERPYVVIDTGGITGDE 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N I M Q+ A +EA ++L ++D++AG+T D + S LR+++IP +V NK+D Sbjct: 65 N-GIDLPMAQQSMAAADEADIVLLILDARAGLTGVDQELVSLLRRQSIPFHVVVNKIDGM 123 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + YSL + I+A H+ G + + F Sbjct: 124 NSDTAMGDFYSLGIDPLYRIAASHNRGVRSMIEEVLAPF--------------------- 162 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P++ IT+E ++ +++A+VGRPNVGKSTL+NR+LG R++ G TRDSV I Sbjct: 163 PEDEITAEEQAH------GIKVAIVGRPNVGKSTLVNRMLGEERVVVYDHPGTTRDSVYI 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + + DTAG+R+ + ES+E+ ++ K+++++ ++L+DA QD+ Sbjct: 217 DFEREGEQYTLIDTAGVRRRKNVKESVEKFSIVKTLKAIDDSNVVLLLMDAHEGIVDQDM 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSD-KLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 ++ G A+V+ +NKWD + D + + ++D ++ +K + ++ IS G G Sbjct: 277 HLLGHCIEAGRALVVVVNKWDGLDDYQKDRIKDSISRRLK-FVEFAQMHF--ISALHGSG 333 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 + L ++ +++T+YL L+ +PPP + R +L+Y +PP Sbjct: 334 VGHLYQAIHTAYLAATQKLSTNYLTRILEGAVSDHPPPMVNGRRIKLRYAHAGGQNPPRI 393 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 ++ K+P SY+RYL N R + G PI++ F++++NPY + Sbjct: 394 VVHGNQTTKVPASYERYLENVYRRELGIEGTPIKIEFRTTENPYAGR 440 >gi|295706430|ref|YP_003599505.1| GTP-binding protein EngA [Bacillus megaterium DSM 319] gi|294804089|gb|ADF41155.1| GTP-binding protein EngA [Bacillus megaterium DSM 319] Length = 436 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 152/462 (32%), Positives = 243/462 (52%), Gaps = 33/462 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKST+FNR+V +++++V + PG+TRDR+Y V FNI+DT GI G Sbjct: 6 IAIVGRPNVGKSTIFNRIVGERVSIVEDIPGVTRDRIYSSGEWLNVDFNIIDTGGIDIGD 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +Q+ Q E+AI+EA +I+FL++ + GIT D + L K P+++ NK+D Sbjct: 66 EPFL-EQIKQQAEIAIDEADVIIFLVNGRDGITAADEEVAKILYKSKKPVVLAVNKVDNP 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + Y+ Y+L + E IS H LG +L K F Sbjct: 125 EMRELIYDFYALGYGEPFPISGTHGLGLGDLLDEAAKHF--------------------- 163 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 PKE G+ +K +++GRPNVGKS+L+N LLG +R++ +G TRD++ Sbjct: 164 PKEKDEDYGEEVIK-------FSLIGRPNVGKSSLVNALLGEDRVIVSDLAGTTRDAIDT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + ++ + DTAGMRK ++ ES E+ +V ++++++ + +V+L+A +QD Sbjct: 217 KFTKEDQEYVVIDTAGMRKRGKVYESTEKYSVLRALKAIERSDVVLVVLNAEEGIIEQDK 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 +I G AVV+ +NKWD V ++ ++ + I +S +T + Sbjct: 277 KIAGYAQEAGKAVVIVVNKWDTVEKDEKTMKKFEENIREHFQFLTYAPIVFLSAKTKKRT 336 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLK--YITQIQSSPPS 422 L+ + ++ R+ TS LN + NP PT + NRLK Y TQ+ PP+ Sbjct: 337 HTLLPMIDLASESHAVRVETSILNDVIMDAVAMNPTPT--HNGNRLKIYYTTQVAIKPPT 394 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 F++F P + SYKR+L N+LR F G PI++ + K Sbjct: 395 FVVFVNDPELMHFSYKRFLENKLREAFGFEGTPIKIIARPRK 436 >gi|167753390|ref|ZP_02425517.1| hypothetical protein ALIPUT_01664 [Alistipes putredinis DSM 17216] gi|167658015|gb|EDS02145.1| hypothetical protein ALIPUT_01664 [Alistipes putredinis DSM 17216] Length = 433 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 153/457 (33%), Positives = 235/457 (51%), Gaps = 29/457 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNRLV ++ A+V G TRDR YG+ NG F+++DT G + Sbjct: 4 VAIVGRPNVGKSTLFNRLVGQRKAIVDATAGTTRDRHYGKTDWNGREFSVIDTGGYSVNS 63 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + Q LAI EA +ILFL++ GIT D + LR+ + +++V NK+D Sbjct: 64 DDIFEDDIRRQVMLAIEEADVILFLVEVNTGITDLDQMMADILRRTSKKVLLVCNKVDNY 123 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + +E YSL E IS+ GT +L I + + N EE Sbjct: 124 DLIYSSHEFYSLGLGEPYCISSMSGSGTGDLMDEIVRDLPPETKNE----------EEEL 173 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P RI +VGRPNVGKS+L N LLG R + +G TRD++ Sbjct: 174 P-------------------RITIVGRPNVGKSSLTNALLGEERNIVTPIAGTTRDAIHS 214 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 +N + DTAGMRK ++TE LE +V +S++++ + I++LDA E QDL Sbjct: 215 RYNKYGLDFYLVDTAGMRKKGKVTEDLEFYSVMRSIRAIEESDVCILMLDAQQGLESQDL 274 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 I + + V+ +NKWD+V N +++ + K L DI I S + + Sbjct: 275 NIHNLIVRNRKGCVIVVNKWDLVEKGNNTMKEWKEALAKKLAPFNDIPIIFTSVLNKQRI 334 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 +++ + + + + K R+ TS LN +L PPP +Y ++KY+ Q+ + P F Sbjct: 335 LEVLQTAIRVYENRKRRVATSALNDYLLPIIENYPPPATKGKYIKIKYVMQLPTPTPQFA 394 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 F P I + Y+R+L N++R + SG+PI++ F+ Sbjct: 395 CFVNLPQYIKDPYRRFLENKIREEWDFSGVPIQIYFR 431 >gi|82703488|ref|YP_413054.1| GTP-binding protein EngA [Nitrosospira multiformis ATCC 25196] gi|123768150|sp|Q2Y6F9|DER_NITMU RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|82411553|gb|ABB75662.1| Small GTP-binding protein domain [Nitrosospira multiformis ATCC 25196] Length = 466 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 155/472 (32%), Positives = 238/472 (50%), Gaps = 33/472 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M T+ +VG NVGKSTLFNRL + + A+V + PG+TRDR YG + + +VDT G Sbjct: 1 MKPTLVLVGRSNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGHGKLGDRPYLVVDTGGF 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 I +M QT AI+EA ++LF++D ++G+T D + LR+ ++ NK Sbjct: 61 EPMATEGILHEMAKQTLQAIDEADVVLFIVDGRSGLTAQDKIVAEQLRRSGRRTLLAVNK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + E + L E ISA H +EL ++ Q +P+ P +R Sbjct: 121 TEGMAVSVVTAEFHELGLGEPCAISAAHGDNVNELVTLAL----QDFPDEP-----EQER 171 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 ++ PK IA+VGRPNVGKSTL+N LLG R++ Q G TRD Sbjct: 172 KDDHPK-------------------IAIVGRPNVGKSTLVNTLLGEERVIAFDQPGTTRD 212 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ I + + DTAG+R+ ++ E++E+ +V K++Q++ I++LDA Sbjct: 213 SIYIDFERNGRTYTLIDTAGLRRRGKVQETVEKFSVVKTLQAIEDANVVILVLDAASEIS 272 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAI-KNLPQIGDIY-INTISG 358 QD I + G A+VLA+NKWD + + +D+ + I + LP + + + IS Sbjct: 273 DQDAHIGGFILEAGRALVLAVNKWDSLDE---YQRDMIKRDINRKLPFLQNFARFHYISA 329 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 G G L+ SV + T L L + PPP +L+Y Q S Sbjct: 330 LHGTGTKGLLPSVDAAYGAAMAHLPTPRLTRTLLAAVEKQPPPRAGMSRPKLRYAHQGGS 389 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I + N +P++Y+RYL N R F L G P+R+ F++ +NPY K Sbjct: 390 NPPLIIIHGSALNAVPQTYQRYLENTFRDTFGLEGTPLRIEFRTGRNPYAGK 441 >gi|223985795|ref|ZP_03635838.1| hypothetical protein HOLDEFILI_03144 [Holdemania filiformis DSM 12042] gi|223962243|gb|EEF66712.1| hypothetical protein HOLDEFILI_03144 [Holdemania filiformis DSM 12042] Length = 434 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 137/461 (29%), Positives = 240/461 (52%), Gaps = 31/461 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 +AIVG PNVGKST+FNR++ +++++V + PG+TRDR+YG+ F ++DT GI Sbjct: 5 VVAIVGRPNVGKSTIFNRILGERVSIVEDTPGVTRDRIYGKGTWLTQDFRLIDTGGI-QL 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 +N +++ Q E+AI EA +ILF+++ + G+T D I LR+ P+++ NK+D Sbjct: 64 ENQPFQEEIKAQVEIAIEEADVILFVVNGRDGVTGDDEFIARMLRRSGKPVVLAVNKIDD 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 Q N YE Y+L E + +S H +G ++ + F +K + Sbjct: 124 ATLQGNIYEFYALGLSEPIAVSGSHGIGIGDVMDALVGAFPEK----------------Q 167 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 P+ EG +R A++GRPNVGKS+L+N LL R++ G TRD+V Sbjct: 168 QPE----LEG----------IRFAIIGRPNVGKSSLVNALLKEERVIVSDIEGTTRDAVD 213 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + + DTAG+RK ++ E++E+ +V ++M ++ C+ + ++D +QD Sbjct: 214 TPFEHDGKQYVVVDTAGIRKRGKVYENIEKYSVLRAMSAIERCDVVLFVIDGESGIREQD 273 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 + G +++ NKWD V + + + + + +S +T + Sbjct: 274 KHVAGYAHEAGKPIIIVYNKWDAVEKDEKTMNRVTEQIRAQFVYLSYAPVLFVSAKTHQR 333 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 ++ L+ + ++ + RI T+ LN + QL P PT + ++ Y +Q+ +PP+F Sbjct: 334 VNTLLPMIDDVYHYSQLRIATNVLNEVVMDAQLTTPAPTHNGQRLKILYASQVAVAPPTF 393 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 ++F P + SY+RY+ NRLR F G PIR+ +S + Sbjct: 394 VLFVNDPQLLHFSYRRYIENRLREAFGFDGSPIRIIARSKE 434 >gi|294501083|ref|YP_003564783.1| GTP-binding protein EngA [Bacillus megaterium QM B1551] gi|294351020|gb|ADE71349.1| GTP-binding protein EngA [Bacillus megaterium QM B1551] Length = 436 Score = 254 bits (648), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 152/462 (32%), Positives = 243/462 (52%), Gaps = 33/462 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKST+FNR+V +++++V + PG+TRDR+Y V FNI+DT GI G Sbjct: 6 IAIVGRPNVGKSTIFNRIVGERVSIVEDIPGVTRDRIYSSGEWLNVDFNIIDTGGIDIG- 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +Q+ Q E+AI+EA +I+FL++ + GIT D + L K P+++ NK+D Sbjct: 65 DEPFLEQIKQQAEIAIDEADVIIFLVNGRDGITAADEEVAKILYKSKKPVVLAVNKVDNP 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + Y+ Y+L + E IS H LG +L K F Sbjct: 125 EMRELIYDFYALGYGEPFPISGTHGLGLGDLLDEAAKHF--------------------- 163 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 PKE G+ +K +++GRPNVGKS+L+N LLG +R++ +G TRD++ Sbjct: 164 PKEKDEDYGEDVIK-------FSLIGRPNVGKSSLVNALLGEDRVIVSDLAGTTRDAIDT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + ++ + DTAGMRK ++ ES E+ +V ++++++ + +V+L+A +QD Sbjct: 217 KFTKEDQEYVVIDTAGMRKRGKVYESTEKYSVLRALKAIERSDVVLVVLNAEEGIIEQDK 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 +I G AVV+ +NKWD V ++ ++ + I +S +T + Sbjct: 277 KIAGYAQEAGKAVVIVVNKWDTVEKDEKTMKKFEENIREHFQFLTYAPIVFLSAKTKKRT 336 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLK--YITQIQSSPPS 422 L+ + ++ R+ TS LN + NP PT + NRLK Y TQ+ PP+ Sbjct: 337 HTLLPMIDLASESHAVRVETSILNDVIMDAVAMNPTPT--HNGNRLKIYYTTQVAIKPPT 394 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 F++F P + SYKR+L N+LR F G PI++ + K Sbjct: 395 FVVFVNDPELMHFSYKRFLENKLREAFGFEGTPIKIIARPRK 436 >gi|78217514|gb|ABB36863.1| GTP-binding protein EngA [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 475 Score = 254 bits (648), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 149/475 (31%), Positives = 253/475 (53%), Gaps = 41/475 (8%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ IA++G PNVGKSTLFNRL++ A+ + PG+TRDR+ G + F I+DT GI Sbjct: 21 MLPKIALIGRPNVGKSTLFNRLIRSNRAITHDRPGVTRDRMEGYVKVGDRKFIIIDTGGI 80 Query: 61 ADGKNCSIAKQMND----------QTELAINEAHLILFLIDSKAGITPYDHAITSFLRKK 110 ++ ++A+ ++ QTE AI ++ + ++D + G+TP+D ++ +++RK Sbjct: 81 TLDEHAAVAEGPDELRGFEAEILRQTEEAIADSVALCLVVDGREGLTPFDESLAAYVRKS 140 Query: 111 NIPIIIVSNKMD-TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPN 169 P+++ NK+D +A E ++L F ++ +S H +F + Sbjct: 141 GKPVLLAVNKVDGEEMADLYMAEFHTLGFP-VIPLSGAHGFNVRAFSGELFDLL------ 193 Query: 170 HPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRL 229 P E +E++P+E +PL++A++GRPN GKS+L+N L G R+ Sbjct: 194 -PPE-------DEDAPQEEE-----------ERPLKLAMLGRPNAGKSSLVNALSGSRRM 234 Query: 230 LTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETT 289 + +G TRDSV I+ DTAG+R+ ++I + +E+ +V S++S + T Sbjct: 235 IVSDVAGTTRDSVDIAVELGGRRYVFVDTAGVRRRAKIQDPVERYSVNSSLKSTTKADVT 294 Query: 290 IVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMV-SDKLNLLQDLRTKAIKNLPQI 348 +V+LDA +QD R++D + +L +NK D+V D L L+ L A+ + Sbjct: 295 LVVLDAVEGLTQQDKRLIDLLDERKTPFMLVINKIDLVPRDGLTALKRLYDDALTFCKHV 354 Query: 349 GDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYN 408 +Y IS R+G G+D L+ +INK R+ T LN L + ++ PP + Sbjct: 355 PIMY---ISARSGRGVDKLLPMARKINKECYVRVGTGLLNRTLTEAVTRHQPPVVKRVRP 411 Query: 409 RLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSS 463 + Y+TQ +++PP+F+ F +I ESY RYL +R F + P+R+ F+SS Sbjct: 412 KFFYLTQAETNPPTFVFFVNDHERIQESYARYLEKFMRKRFEIEHAPMRVRFRSS 466 >gi|58696986|ref|ZP_00372467.1| GTP-binding protein [Wolbachia endosymbiont of Drosophila simulans] gi|58698319|ref|ZP_00373236.1| GTP-binding protein [Wolbachia endosymbiont of Drosophila ananassae] gi|58535192|gb|EAL59274.1| GTP-binding protein [Wolbachia endosymbiont of Drosophila ananassae] gi|58536766|gb|EAL60014.1| GTP-binding protein [Wolbachia endosymbiont of Drosophila simulans] Length = 399 Score = 254 bits (648), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 144/429 (33%), Positives = 239/429 (55%), Gaps = 39/429 (9%) Query: 47 INGVIFNIVDTAGIADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF 106 I+ + F ++DT G D S + Q+ +Q E +++ +++I FL+D+K Sbjct: 4 ISDLEFKVIDTGGWND--QTSFSLQVIEQIEFSLSSSNIIFFLVDAKVQNERNKEFAKWL 61 Query: 107 LRKKNIPIIIVSNKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQK 166 RK N P+I+++NK ++ ++ Y + DF V ISAEH+LG +L+ + + Sbjct: 62 KRKINKPVILIANKCESHKSENVDY-LQFFDFLGPVYISAEHNLGMVDLYDALAGV---- 116 Query: 167 YPNHPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGY 226 IEN N E P ++ LRIA++GRPNVGKST +N LL Sbjct: 117 --------IENFNENTELPNNELSR------------LRIAIIGRPNVGKSTFLNGLLAE 156 Query: 227 NRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTC 286 NRL+T S+ G TRDSV I+++ I + DTAG+R+ + + + LE + V+KSM+S++ Sbjct: 157 NRLITSSEPGTTRDSVDITYDHDGELITLIDTAGIRRKANVVDGLESRFVEKSMESIKRS 216 Query: 287 ETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLP 346 +++LD+ + E+QDL I ++ G +++ LNKWD++ +D R++ IK + Sbjct: 217 HVVVLMLDSLVGIEQQDLSIGEAAIKGGKGIIVVLNKWDLIG------KDDRSRLIKFVK 270 Query: 347 Q--IGDIYIN----TISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPP 400 Q + +++ TIS G D++ LE+++ +I+T+ LN WL ++ Sbjct: 271 QQEVTRLFLEVPTITISALKGMRCGDVIDKCLEVSESLNKKISTAKLNKWLIDAVGKHSH 330 Query: 401 PTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCF 460 P + + ++KYI QI + PP+F + C P + ESYKRYLIN LR NF G+P+R+ Sbjct: 331 PLVKGKAVKMKYIAQIGTKPPAFSLICNIPESVDESYKRYLINDLRKNFFADGVPVRLLL 390 Query: 461 QSSKNPYIK 469 + +KNPY+K Sbjct: 391 KKNKNPYVK 399 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 40/120 (33%), Positives = 64/120 (53%), Gaps = 2/120 (1%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAI+G PNVGKST N L+ + + + PG TRD + +G + ++DTAGI Sbjct: 136 IAIIGRPNVGKSTFLNGLLAENRLITSSEPGTTRDSVDITYDHDGELITLIDTAGIRRKA 195 Query: 65 NC--SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 N + + +++ +I +H+++ ++DS GI D +I K II+V NK D Sbjct: 196 NVVDGLESRFVEKSMESIKRSHVVVLMLDSLVGIEQQDLSIGEAAIKGGKGIIVVLNKWD 255 >gi|319936463|ref|ZP_08010879.1| GTP-binding protein engA [Coprobacillus sp. 29_1] gi|319808578|gb|EFW05130.1| GTP-binding protein engA [Coprobacillus sp. 29_1] Length = 435 Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 140/456 (30%), Positives = 239/456 (52%), Gaps = 30/456 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 +AIVG NVGKST+FNR+V +++++V + PG+TRDR+Y A F ++DT GI + Sbjct: 5 VVAIVGRANVGKSTIFNRIVGERVSIVEDIPGVTRDRIYANASWLTRDFRLIDTGGI-EL 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 ++ S +Q+ Q E+AI EA +ILF+++ + GIT D + L+K PI++ NK+D Sbjct: 64 EDASFTEQIKMQAEIAIEEADVILFVVNGREGITREDAFVARMLQKSKKPIVLAVNKIDD 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 ++ + N Y+ Y+L + + +S H +G ++ I H + E+++ +E Sbjct: 124 QVYKDNIYDFYNLGVGDPIAVSGSHGIGIGDILDQII---------HLMPESEDHREEDE 174 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 +R +++GRPNVGKS+L N LLG R++ G TRD++ Sbjct: 175 --------------------IRFSIIGRPNVGKSSLTNALLGEERVIVSDIEGTTRDAID 214 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 ++ + DTAGMRK ++ E++E+ ++ +++ +V + +V++D +QD Sbjct: 215 TAFEKDGQKYRVIDTAGMRKKGKVYENIEKYSILRALSAVEKSDVVLVVIDGERGVVEQD 274 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 + + G V+L +NKWD+V +Q + + + + I S + + Sbjct: 275 KHVAGNAHEAGRGVILVVNKWDLVQKDGKTMQKMEKELREQFKYLDYAPIVFTSAKEKKR 334 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 +D L + E+ + R+TTS LN L Q NP T ++ Y+ Q+ PP+F Sbjct: 335 IDLLFPLIQEVYANNRKRVTTSVLNDVLIDAQAMNPTTTFNGGRLKIYYVNQVSVCPPTF 394 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 ++F P + SYKRYL NRLR F G PI + Sbjct: 395 VLFTNDPMYLHFSYKRYLENRLREAFGFEGTPIHII 430 >gi|212696217|ref|ZP_03304345.1| hypothetical protein ANHYDRO_00753 [Anaerococcus hydrogenalis DSM 7454] gi|212676846|gb|EEB36453.1| hypothetical protein ANHYDRO_00753 [Anaerococcus hydrogenalis DSM 7454] Length = 442 Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 147/462 (31%), Positives = 255/462 (55%), Gaps = 33/462 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + +VG NVGKSTLFN+LV K+ A+ + G+TRDR+Y + G F + DT G+ Sbjct: 10 VTLVGRTNVGKSTLFNKLVGKRKAITEDENGVTRDRVYDKVEWTGKEFILADTGGLDISN 69 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +++ Q E A+ E+ LILF++D + GI P+D I++ LRK N +I+V+NK+D Sbjct: 70 KEIMNQEIKSQVEKALLESDLILFVVDGREGINPHDFEISNELRKYNKKVIVVANKIDRE 129 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + Y+ Y F ++V ISAE G+ L ++ K+ +E I+ +K + + Sbjct: 130 TIPDHIYDFYQFGFDDLVTISAE---GSKNLGDLLDKV---------VESIDFSKFDTDL 177 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 RIA++G+PN GKS+L+N LL R++ +G TRD++ Sbjct: 178 D-----------------ATRIAIIGKPNAGKSSLVNHLLNEERMIVTDIAGTTRDAIDT 220 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 W +K++ + DTAG+R+ +++++++E +++ +V + E + L+DAT+ +QD Sbjct: 221 YWQYKDNNYVLIDTAGLRRKNKVSDNIEYYANQRTFDAVDSSEICLFLIDATVGVTEQDT 280 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIY--INTISGRTGE 362 +I N A+++A+NKWD V + N ++++ + I+N +Y I IS + Sbjct: 281 KIAGYAHNKRKAIIIAVNKWDKVEKETNTMRNME-REIRNKLSFA-LYAPIIFISVLKSQ 338 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 + DL+ + +N + TRI T LN+ LQ + PP + ++ YI+Q+Q++PP Sbjct: 339 RIIDLLNLIEIVNSNYHTRIKTGVLNTILQDAIMMTAPPQDKGKRLKIYYISQVQTAPPK 398 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 FL+ + SY+RYL N++R N+SL G+P + K Sbjct: 399 FLLHVNDKELMHFSYQRYLENQIRQNYSLQGVPFTFEIRERK 440 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 45/175 (25%), Positives = 81/175 (46%), Gaps = 12/175 (6%) Query: 199 NISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDT 258 N+ P+ + +VGR NVGKSTL N+L+G + +T ++G+TRD V W + DT Sbjct: 4 NMKAPI-VTLVGRTNVGKSTLFNKLVGKRKAITEDENGVTRDRVYDKVEWTGKEFILADT 62 Query: 259 AGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVV 318 G+ ++ E + Q+ + +++ + + ++D D I + + V+ Sbjct: 63 GGLDISNK--EIMNQEIKSQVEKALLESDLILFVVDGREGINPHDFEISNELRKYNKKVI 120 Query: 319 LALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 + NK D ++ I + Q G + TIS + L DL+ V+E Sbjct: 121 VVANKID---------RETIPDHIYDFYQFGFDDLVTISAEGSKNLGDLLDKVVE 166 >gi|138895798|ref|YP_001126251.1| GTP-binding protein EngA [Geobacillus thermodenitrificans NG80-2] gi|196248680|ref|ZP_03147380.1| small GTP-binding protein [Geobacillus sp. G11MC16] gi|166198718|sp|A4IQA2|DER_GEOTN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|134267311|gb|ABO67506.1| GTP-binding protein-like protein [Geobacillus thermodenitrificans NG80-2] gi|196211556|gb|EDY06315.1| small GTP-binding protein [Geobacillus sp. G11MC16] Length = 436 Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 146/461 (31%), Positives = 243/461 (52%), Gaps = 29/461 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 +AIVG PNVGKST+FNR+V +++++V + PG+TRDR+Y A F ++DT GI G Sbjct: 5 VVAIVGRPNVGKSTIFNRIVGERISIVEDVPGVTRDRIYSSAEWLNHSFYLIDTGGIDIG 64 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + Q+ Q E+AI+EA +I+F+ + + G+T D + LR+ N P+++ NK+D Sbjct: 65 DEPLLV-QIRQQAEIAIDEADVIIFMTNGRDGVTAADEEVAKLLRRSNKPVVLAVNKIDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + Y+ Y+L F E IS H G +L + + F Sbjct: 124 PEMRDLIYDFYALGFGEPYPISGAHGTGLGDLLDAVARHF-------------------- 163 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 PK++ G+ +++ ++ ++GRPNVGKS+L+N +LG R++ +G TRD+V Sbjct: 164 -PKDH----GQEYEEDV---IKFCLIGRPNVGKSSLVNAILGEERVIVSDIAGTTRDAVD 215 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 S+ + I DTAGMRK +I ES E+ +V ++++++ + +V+L+A +QD Sbjct: 216 TSFVREGQKYVIIDTAGMRKRGKIYESTEKYSVLRALRAIERSDVVLVVLNAEEGIIEQD 275 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 +I G V+L +NKWD V + + K + P + I +S +T + Sbjct: 276 KKIAGYAHEAGRGVILVVNKWDAVEKDDKTMVEFERKIRDHFPFLDYAPILFVSAKTKQR 335 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 L L+ V ++ R+ T+ LN + NP PT R ++ Y+TQ+ PP+F Sbjct: 336 LHKLLPLVQLVSDNHAMRVQTNVLNEVIMDAVAMNPTPTHNGRRLKIYYMTQVAVKPPTF 395 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 + F P + SY+R+L NR+R F G PI++ + K Sbjct: 396 VAFVNDPELMHFSYERFLENRIRDAFGFEGTPIKIIARPRK 436 >gi|152975027|ref|YP_001374544.1| GTP-binding protein EngA [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|189037136|sp|A7GN41|DER_BACCN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|152023779|gb|ABS21549.1| small GTP-binding protein [Bacillus cytotoxicus NVH 391-98] Length = 436 Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 144/458 (31%), Positives = 242/458 (52%), Gaps = 29/458 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST+FNR+V +++++V + PG+TRDR+Y FNI+DT GI G Sbjct: 6 VAIVGRPNVGKSTIFNRIVGERISIVEDIPGVTRDRIYSAGEWLNHEFNIIDTGGIDIGD 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + Q+ Q E+AI+EA +I+F+ + + G+T D + L + N P+++ NK+D Sbjct: 66 EPFLT-QIRQQAEVAIDEADVIIFMTNGRDGVTAADEEVAKILYRSNKPVVLAVNKVDNP 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + Y+ Y+L F E IS H LG +L + Q +P +E + ++E+ Sbjct: 125 EMRNEIYDFYALGFGEPFPISGTHGLGLGDLLDEV----AQHFPK-----VEEEEYDDET 175 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 +R ++GRPNVGKS+L+N LLG R++ + +G TRD+V Sbjct: 176 -------------------IRFCLIGRPNVGKSSLVNALLGQERVIVSNVAGTTRDAVDT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + I DTAGMRK ++ ES E+ +V ++++++ + +V+LD +QD Sbjct: 217 PYTKDGQDYVIIDTAGMRKKGKVYESTEKYSVLRALRAIERSDVVLVVLDGEEGIIEQDK 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 +I ++G AVV+ +NKWD V ++ + + I +S +T + Sbjct: 277 KIAGYAHDSGRAVVIVVNKWDAVKKDEKTMKAFEDNIRAHFQFLDYAPIVFLSAKTKKRT 336 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 L+ + ++++ R+ T+ LN + NP PT ++ Y TQ+ PP+F+ Sbjct: 337 QTLLPVINQVSESHNIRVQTNVLNDVIMDAVAMNPTPTHNGSRLKIFYATQVAVKPPTFV 396 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 +F P + SY+R+L NRLR +F G PIR+ ++ Sbjct: 397 VFVNDPELMHFSYERFLKNRLRESFGFVGTPIRIIARA 434 >gi|255325638|ref|ZP_05366735.1| ribosome-associated GTPase EngA [Corynebacterium tuberculostearicum SK141] gi|255297248|gb|EET76568.1| ribosome-associated GTPase EngA [Corynebacterium tuberculostearicum SK141] Length = 526 Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 151/462 (32%), Positives = 242/462 (52%), Gaps = 40/462 (8%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI- 60 + T+AIVG PNVGKS+L NR + ++ AVV +HPG+TRDR+ A NG F + DT G Sbjct: 90 LCTVAIVGRPNVGKSSLVNRFLGRREAVVEDHPGVTRDRISYVADWNGQRFLVQDTGGWD 149 Query: 61 --ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVS 118 G + +IA+ Q E+A+ A +I+ ++D+K GIT D + L+K +P+I+VS Sbjct: 150 PNVKGIHGAIAR----QAEVAMETADVIVMVVDTKVGITATDEVMARRLQKSPVPVILVS 205 Query: 119 NKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 NK D+ + E Y+L + +SA+H G +++ I ++F Sbjct: 206 NKFDSDNQYADMAEFYALGLGDPWPVSAQHGRGGADVLDEILRVFP-------------- 251 Query: 179 KRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 E P++ + G P R+A+VG+PNVGKS+L+N+L R + + +G T Sbjct: 252 ----EEPRQTAITSG---------PRRVALVGKPNVGKSSLLNKLTSEERSVVDNVAGTT 298 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 D V + DTAG+RK + + E ++ + E I+L+DA+ Sbjct: 299 VDPVDSLVQLDEQLWKFIDTAGLRKKVKNAQGHEYYASLRTRGVIDAAEVCIMLIDASEE 358 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWD-MVSDKLNLLQDLRTKAIKNLPQIGDIYINTIS 357 +QD R+++ V G A+V+A NKWD M D+ L + + +LP + + I+ + Sbjct: 359 ISEQDQRVLNMVLEAGKALVIAFNKWDLMDEDRRYYLDREIDQQLSHLPWVTRVNISAET 418 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 GR + L+ M+ LE W R++T LN+WL++ NPPP NR R+ + TQ Sbjct: 419 GRALQKLEPAMIEALES---WDQRVSTGQLNNWLREAIAANPPPMKNNRLPRVLFATQAS 475 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 + PP+ ++F T + +Y+RYL + R F G PIR+ Sbjct: 476 TQPPTIVLFTT--GFLDAAYRRYLERKFRERFGFHGTPIRIA 515 >gi|306836038|ref|ZP_07469028.1| ribosome-associated GTPase EngA [Corynebacterium accolens ATCC 49726] gi|304568065|gb|EFM43640.1| ribosome-associated GTPase EngA [Corynebacterium accolens ATCC 49726] Length = 527 Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 151/462 (32%), Positives = 242/462 (52%), Gaps = 40/462 (8%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI- 60 + T+AIVG PNVGKS+L NR + ++ AVV + PG+TRDR+ A NG F + DT G Sbjct: 90 LCTVAIVGRPNVGKSSLVNRFLGRREAVVEDQPGVTRDRVSYVADWNGQRFIVQDTGGWD 149 Query: 61 --ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVS 118 G + IA+ Q E+A++ A +I+ ++D+K GIT D + L+K +P+I+VS Sbjct: 150 PNVKGMHADIAR----QAEMAMDTADVIVMVVDTKVGITETDEVMARRLQKSPVPVIVVS 205 Query: 119 NKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 NK D+ + + Y+L + +SA+H G +++ I + F Sbjct: 206 NKFDSDNQYADMAQFYALGLGDPWPVSAQHGRGGADVLDEILRSFP-------------- 251 Query: 179 KRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 E P+E + G P R+A+VGRPNVGKS+L+N+L R + + +G T Sbjct: 252 ----EEPRETSITSG---------PRRVALVGRPNVGKSSLLNKLTSEERSVVDNVAGTT 298 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 D V + DTAG+RK + + E ++ + E I+L+DA+ Sbjct: 299 VDPVDSLVQLDEQLWKFIDTAGLRKKVKNAQGHEYYASLRTRGVIDAAEVCIMLIDASEE 358 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWD-MVSDKLNLLQDLRTKAIKNLPQIGDIYINTIS 357 +QD R+++ V +G A+V+A NKWD M D+ L + +++LP + + I+ + Sbjct: 359 ISEQDQRVLNMVLESGKALVIAFNKWDLMDEDRRYYLDREIDEQLRHLPWVTRVNISAET 418 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 GR + L+ M+ LE W R++T LN+W+++ NPPP NR R+ + TQ Sbjct: 419 GRALQKLEPAMIEALES---WDQRVSTGQLNNWMREAIAANPPPMKNNRLPRVLFATQAS 475 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 + PP+ ++F T + SY+RYL + R F G PIR+ Sbjct: 476 TQPPTIVLFTT--GFLDASYRRYLERKFRERFGFHGTPIRIA 515 >gi|255021269|ref|ZP_05293318.1| GTP-binding protein EngA [Acidithiobacillus caldus ATCC 51756] gi|254969280|gb|EET26793.1| GTP-binding protein EngA [Acidithiobacillus caldus ATCC 51756] Length = 447 Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 155/470 (32%), Positives = 238/470 (50%), Gaps = 34/470 (7%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M IA+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG A F ++DT G Sbjct: 1 MAAVIALVGRPNVGKSTLFNRLTRSREALVADLPGLTRDRHYGVAQHGTQRFLVIDTGGF 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + + M QT AI EA + FL+D+K G++ D I + LR+ + +V NK Sbjct: 61 EPEEREGLVAAMAAQTRQAIAEADAVCFLVDAKEGLSAQDEEIAAELRRSGKTVYLVVNK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 MD R A E + L I+A H G L IF Sbjct: 121 MDVRGAVAELPEFHRLGLGMPYTIAASHGHGVETLLDAIFA------------------- 161 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 + P+E ++ ++S P RIAV+GRPNVGKSTL+N +LG R++ G TRD Sbjct: 162 DLAVPEE------AAAELSLSGP-RIAVLGRPNVGKSTLVNAMLGEQRVIVYDAPGTTRD 214 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ I + P + DTAG+R+ +R+ E LE+ +V K++ +++ + +++LDA Sbjct: 215 SIRIPYERAGRPYVMIDTAGIRRRARVGEGLEKLSVLKTLAALKEADVVLMVLDARDGVT 274 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 QD +V ++L LNKWD + + Q + ++L + + TIS Sbjct: 275 DQDAHLVGVAAELWRPMILLLNKWDGLDARAR--QMAKAALERHLGFLSYAPVYTISALH 332 Query: 361 GEGLDDLMVSVLEINKLWKT---RITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 G G+ DL S I++LW+ +T+ LN L + + PP + R +L+Y Q Sbjct: 333 GSGVGDLYPS---IDRLWRDARRHFSTAELNRVLAQIIESHQPPMVGGRRIKLRYCHQGG 389 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 +P + + N++P +YKRYL + R L +P+R+ F+ +NPY Sbjct: 390 ENPITLVFHGNQLNRLPGAYKRYLESAFRKALGLGPVPLRLLFRQGENPY 439 >gi|257784531|ref|YP_003179748.1| small GTP-binding protein [Atopobium parvulum DSM 20469] gi|257473038|gb|ACV51157.1| small GTP-binding protein [Atopobium parvulum DSM 20469] Length = 441 Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 154/463 (33%), Positives = 246/463 (53%), Gaps = 39/463 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL NR+ +K+ A+V G+TRDR Y A NG F ++DT GI K Sbjct: 6 VAIVGRPNVGKSTLVNRIAEKRDAIVHESRGVTRDRSYHDADWNGREFKLIDTGGIESIK 65 Query: 65 NCS-IAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + A + +Q LA +EA +I+F++D G+T D + +RK P+ +V NK D Sbjct: 66 SQDRFAPHIREQALLACDEADVIVFVVDGTTGVTDEDEEVARIVRKSTKPVFLVVNKKDN 125 Query: 124 -RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 Q ++ Y+L E + +SA H GT +L I F + +E Sbjct: 126 PATEQDGLWDFYALGCGEPMPLSASHGHGTGDLLDDIVNAFPEA--------------DE 171 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 E + I L +A++GRPNVGKS+L NRL R + +G TRD++ Sbjct: 172 EPEDDGI--------------LNLAIIGRPNVGKSSLANRLANKKRSIVSDVAGTTRDAI 217 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 WK PI + DTAG+RK S++ E +E ++ + +Q++ + ++++DA++ +Q Sbjct: 218 DTMIEWKGTPIRLVDTAGIRKKSQVHEDVEYYSLVRGLQAMDRADICLLVVDASVGVTEQ 277 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSD--KLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 D ++ + G A+VL LNKWD++ K + + K + P I I ++ ++GR+ Sbjct: 278 DQKLANMAVERGCALVLLLNKWDLIDSETKRDEVAASVAKRLAFAPWIASINVSALTGRS 337 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLK--YITQIQS 418 +D ++ + L + ++ TS LN L Q++ T+ +R RLK Y TQ S Sbjct: 338 ---IDKVLAAALSAAESRAIQLKTSELNELL--AQIREGGHTVSDRGRRLKIQYATQTGS 392 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 PP +C P+ + ++Y+R++ NRLR FSL G PIR+ F+ Sbjct: 393 KPPVVSFWCNAPDLVDDNYERFIENRLREKFSLVGTPIRLKFR 435 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 40/128 (31%), Positives = 67/128 (52%), Gaps = 12/128 (9%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI- 60 I +AI+G PNVGKS+L NRL KK ++V + G TRD + G +VDTAGI Sbjct: 178 ILNLAIIGRPNVGKSSLANRLANKKRSIVSDVAGTTRDAIDTMIEWKGTPIRLVDTAGIR 237 Query: 61 ------ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPI 114 D + S+ + + A++ A + L ++D+ G+T D + + ++ + Sbjct: 238 KKSQVHEDVEYYSLVRGLQ-----AMDRADICLLVVDASVGVTEQDQKLANMAVERGCAL 292 Query: 115 IIVSNKMD 122 +++ NK D Sbjct: 293 VLLLNKWD 300 >gi|218781934|ref|YP_002433252.1| GTP-binding protein EngA [Desulfatibacillum alkenivorans AK-01] gi|226741134|sp|B8FM51|DER_DESAA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|218763318|gb|ACL05784.1| small GTP-binding protein [Desulfatibacillum alkenivorans AK-01] Length = 445 Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 149/462 (32%), Positives = 231/462 (50%), Gaps = 39/462 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKSTLFNR+ K + A+V + PG+TRDR Y A +GV F++VDT G + Sbjct: 4 LAIMGRPNVGKSTLFNRITKSRKAMVDDSPGVTRDRNYADAEHDGVKFSVVDTGGFSKND 63 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + ++ Q AI EA I + D K G +P+D + S LR + PI + NK+D+ Sbjct: 64 PDAFVDLIHFQVNQAIEEADAIAMVFDGKDGPSPFDRDLLSVLRPLDKPIFYLVNKIDSL 123 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + L ++ +S EH G ++ K+ + P +MI Sbjct: 124 DMEYLMADFAELGVDKLHPVSGEHGYGVPTFLDMVVKVLPKASPKLEEDMIS-------- 175 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 I VVGRPN GKS+LIN++LG RLL G TRD+V Sbjct: 176 ---------------------IGVVGRPNAGKSSLINKILGQERLLVSDTPGTTRDAVDT 214 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 P + DTAG+R+ ++ LE+ ++ ++++ + C+ +V+LDAT QD+ Sbjct: 215 VCQVNGKPYLLLDTAGIRRKGKVKHKLEKFSIVRALKGLERCDVALVMLDATEGITDQDV 274 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYIN-----TISGR 359 I + NKWD+V DK D K IK+ ++ ++N TIS Sbjct: 275 HIAGYAEERKCGCIFLANKWDLVKDK-----DWALKKIKDEVRMNAKFLNYAPFMTISAL 329 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 TG+ ++ + V ++ + TRI+TS LN L+ ++ PP R + Y TQ+ + Sbjct: 330 TGQRVNRIFELVDKVYAQYTTRISTSKLNRMLENAITRHEPPYHKGRRLKFYYATQVSTK 389 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 PP+ + F P+ + SYKR+LIN +R L PIR+ F+ Sbjct: 390 PPTIVCFVNHPDAVHFSYKRFLINHIREETGLDQTPIRLLFR 431 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 38/126 (30%), Positives = 65/126 (51%), Gaps = 12/126 (9%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI-AD 62 +I +VG PN GKS+L N+++ ++ +V + PG TRD + +NG + ++DTAGI Sbjct: 175 SIGVVGRPNAGKSSLINKILGQERLLVSDTPGTTRDAVDTVCQVNGKPYLLLDTAGIRRK 234 Query: 63 GK------NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIII 116 GK SI + + + + L ++D+ GIT D I + ++ I Sbjct: 235 GKVKHKLEKFSIVRALK-----GLERCDVALVMLDATEGITDQDVHIAGYAEERKCGCIF 289 Query: 117 VSNKMD 122 ++NK D Sbjct: 290 LANKWD 295 >gi|194016775|ref|ZP_03055388.1| ribosome-associated GTPase EngA [Bacillus pumilus ATCC 7061] gi|194011381|gb|EDW20950.1| ribosome-associated GTPase EngA [Bacillus pumilus ATCC 7061] Length = 436 Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 142/460 (30%), Positives = 246/460 (53%), Gaps = 29/460 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST+FNR+ +++++V + PG+TRDR+Y A FN++DT GI G Sbjct: 6 VAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGD 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +A Q+ Q E+A++EA +I+F+++ + G+T D + L + P+++ NK+D Sbjct: 66 EPFLA-QIRHQAEIAMDEADVIIFMVNGRDGVTSADEEVAKILYRTKKPVVLAVNKLDNP 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + Y+ Y+L F E IS H LG +L + + FK N P + + +E+ Sbjct: 125 EMRSDVYDFYALGFGEPYPISGTHGLGLGDLLDAVAEHFK----NLP-----DTQYDEQV 175 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 ++ ++GRPNVGKS+L+N +LG +R++ + +G TRD+V Sbjct: 176 -------------------VQFCLIGRPNVGKSSLVNAMLGEDRVIVSNIAGTTRDAVDT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + I DTAGMRK ++ E+ E+ +V ++++++ + V+LD +QD Sbjct: 217 MFTYNQRDFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSDVVAVVLDGEEGIIEQDK 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 RI G AVV+ +NKWD V +++ ++ + + +S T + + Sbjct: 277 RIAGYAHEAGKAVVIVVNKWDAVEKDERTMKEFEQNIREHFQFLDYAPVLFMSALTKKRI 336 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 LM S++ ++ R+ T+ LN + NP PT + ++ Y TQ+ PPSF+ Sbjct: 337 HTLMPSIITASENHAMRVQTNILNDIIMDAVAMNPTPTHNGQRLKIYYATQVAIKPPSFV 396 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 +F P + SY+R+L NR+R F G PI++ ++ K Sbjct: 397 VFVNDPELMHFSYERFLENRIRDAFGFEGTPIKIFARARK 436 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 38/124 (30%), Positives = 62/124 (50%), Gaps = 2/124 (1%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI- 60 + ++G PNVGKS+L N ++ + +V N G TRD + N F IVDTAG+ Sbjct: 175 VVQFCLIGRPNVGKSSLVNAMLGEDRVIVSNIAGTTRDAVDTMFTYNQRDFVIVDTAGMR 234 Query: 61 ADGKNCSIAKQMNDQTEL-AINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 GK ++ + L AI+ + ++ ++D + GI D I + + ++IV N Sbjct: 235 KKGKVYETTEKYSVLRALKAIDRSDVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVN 294 Query: 120 KMDT 123 K D Sbjct: 295 KWDA 298 >gi|91784203|ref|YP_559409.1| GTP-binding protein EngA [Burkholderia xenovorans LB400] gi|123168328|sp|Q13X32|DER_BURXL RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|91688157|gb|ABE31357.1| Small GTP-binding protein [Burkholderia xenovorans LB400] Length = 445 Score = 253 bits (647), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 162/469 (34%), Positives = 239/469 (50%), Gaps = 32/469 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+ + +VDT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRTGERPYLVVDTGGFEPVA 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I +M QT A+ E+ +++F++D + G+ P D +I +LRK PI +V NK + Sbjct: 65 KDGILHEMARQTRQAVEESDIVVFIVDGRNGLAPQDKSIADYLRKVGRPIFLVVNKAEGM 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + Y L + ISA H G +E+ N LE+ + Sbjct: 125 KYSTVAADFYELGLGDPRAISAAHGDGVTEMI------------NEALEVAYAGQ----- 167 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P+EN + VK IA+VGRPNVGKSTLIN L+G R++ G TRDS+ + Sbjct: 168 PEENDDEKAARGVK-------IAIVGRPNVGKSTLINALVGEERVIAFDMPGTTRDSIYV 220 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + P + DTAG+R+ ++ E++E+ +V K++QS+ I+LLDA +QD Sbjct: 221 DFERGGKPYTLIDTAGLRRRGKVFEAIEKFSVVKTLQSISDANVVILLLDARQDISEQDA 280 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAI--KNLPQIGDIYINTISGRTGE 362 I V G A+V+ +NKWD + + RTKA + L + + IS Sbjct: 281 HIAGFVVEQGRALVVGVNKWDGLDPHVR----ERTKADLERKLKFLDFAKFHFISAAEKT 336 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLN-SWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 G+ LM SV + ++ T L + + + Q P R +L+Y Q +PP Sbjct: 337 GIGPLMRSVDDAYAAAMAKLPTPKLTRALIDAVEFQQPRRRGPVR-PKLRYAHQGGQNPP 395 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +I + I E+YKRYL NR R F L+G P+R+ F+SS NPY K Sbjct: 396 IIVIHGNALDAITETYKRYLENRFRETFKLTGTPLRIEFRSSTNPYADK 444 >gi|330817163|ref|YP_004360868.1| GTPase family protein [Burkholderia gladioli BSR3] gi|327369556|gb|AEA60912.1| GTPase family protein [Burkholderia gladioli BSR3] Length = 448 Score = 253 bits (647), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 161/473 (34%), Positives = 245/473 (51%), Gaps = 40/473 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+ + +VDT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRAGARPYLVVDTGGFEPVA 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD-- 122 I +M QT A+ EA +++F++D + G+ P D +I +LRK PI +V NK + Sbjct: 65 KDGILHEMARQTRQAVEEADVVVFIVDGRNGLAPQDKSIADYLRKTGRPIFLVVNKAEGM 124 Query: 123 --TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 T +A +FYE+ D + I SA H G +++ I + + Y P E + Sbjct: 125 KYTAVAS-DFYELGMGDPRAI---SAAHGDGVTDM---INEALEVAYAGQPEEADDTQA- 176 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 S+ ++IA+VGRPNVGKSTL+N L+G +R++ G TRD Sbjct: 177 --------------------SRGVKIAIVGRPNVGKSTLVNTLIGEDRVIAFDMPGTTRD 216 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ + + P + DTAG+R+ ++ E++E+ +V K++QS+ I+LLDA Sbjct: 217 SIYVDFERNGKPYTLIDTAGLRRRGKVFEAIEKFSVVKTLQSISDANVVILLLDAQQDIS 276 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKA--IKNLPQIGDIYINTISG 358 QD I V G A+V+ +NKW D L+ RTKA + L + + IS Sbjct: 277 DQDAHIAGFVVEQGRALVVGVNKW----DGLDAHTRDRTKADLTRKLKFLEFAKFHFISA 332 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWL-QKTQLQNPPPTIFNRYNRLKYITQIQ 417 G+ L+ SV + ++ T L L + + Q P R +L+Y Q Sbjct: 333 AEKTGIGPLLRSVDDAYAAAMKKLPTPKLTRALIEAVEFQQPRRRGPVR-PKLRYAHQGG 391 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP ++ + + E+YKRYL NR R F+L+G P+R+ F+SS NPY K Sbjct: 392 QNPPVIVVHGNALDAVTETYKRYLENRFRETFALTGTPLRIEFRSSVNPYADK 444 >gi|296158988|ref|ZP_06841816.1| ribosome-associated GTPase EngA [Burkholderia sp. Ch1-1] gi|295890863|gb|EFG70653.1| ribosome-associated GTPase EngA [Burkholderia sp. Ch1-1] Length = 445 Score = 253 bits (647), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 163/469 (34%), Positives = 238/469 (50%), Gaps = 32/469 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+ + +VDT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRTGERPYLVVDTGGFEPVA 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I +M QT A+ E+ +++F++D + G+ P D +I +LRK PI +V NK + Sbjct: 65 KDGILHEMARQTRQAVEESDIVVFIVDGRNGLAPQDKSIADYLRKVGRPIFLVVNKAEGM 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + Y L + ISA H G +E+ N LE+ + Sbjct: 125 KYSTVAADFYELGLGDPRAISAAHGDGVTEMI------------NEALEVAYAGQ----- 167 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P+EN + VK IA+VGRPNVGKSTLIN L+G R++ G TRDS+ + Sbjct: 168 PEENDDEKAARGVK-------IAIVGRPNVGKSTLINALVGEERVIAFDMPGTTRDSIYV 220 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + P + DTAG+R+ ++ E++E+ +V K++QS+ I+LLDA +QD Sbjct: 221 DFERGGKPYTLIDTAGLRRRGKVFEAIEKFSVVKTLQSISDANVVILLLDARQDISEQDA 280 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAI--KNLPQIGDIYINTISGRTGE 362 I V G A+V+ +NKWD + + RTKA + L + + IS Sbjct: 281 HIAGFVVEQGRALVVGVNKWDGLDPHVR----ERTKADLERKLKFLDFAKFHFISAAEKT 336 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWL-QKTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 G+ LM SV + ++ T L L + Q P R +L+Y Q +PP Sbjct: 337 GIGPLMRSVDDAYAAAMAKLPTPKLTRALIDAVEFQQPRRRGPVR-PKLRYAHQGGQNPP 395 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +I + I E+YKRYL NR R F L+G P+R+ F+SS NPY K Sbjct: 396 IIVIHGNALDAITETYKRYLENRFRETFKLTGTPLRIEFRSSTNPYADK 444 >gi|160900447|ref|YP_001566029.1| GTP-binding protein EngA [Delftia acidovorans SPH-1] gi|238687162|sp|A9BMU9|DER_DELAS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|160366031|gb|ABX37644.1| small GTP-binding protein [Delftia acidovorans SPH-1] Length = 448 Score = 253 bits (647), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 158/471 (33%), Positives = 249/471 (52%), Gaps = 34/471 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTLFNRL K + A+V + G+TRDR YGQ + ++DT G Sbjct: 5 IALVGRPNVGKSTLFNRLTKSRDAIVADFAGLTRDRHYGQGRQGKHEYIVIDTGGFEPDA 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + I K+M QT+ A+ EA +++F++D++ G++ DH I +LR+ P ++V+NK + Sbjct: 65 SSGIFKEMARQTQQAVAEADVVVFVVDARLGMSAQDHDIAKYLRRLGKPCVLVANKAEGM 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 E Y L +++ +SA H G +L + P E+ Sbjct: 125 KEGVQLTEFYELGLGDVLPVSAAHGQGVRDLLDLALGQLNLPEPE------------EDD 172 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P +++ KP+R+ V GRPNVGKSTLIN LG RL+ G TRD++S+ Sbjct: 173 PFDDVAQ----------KPIRLTVAGRPNVGKSTLINTWLGEERLVAFDMPGTTRDAISV 222 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + E+ DTAG+R+ R+ E++E+ +V K++Q++ + ++L+DAT QD Sbjct: 223 PFERAGQKFELIDTAGLRRKGRVFEAIEKFSVVKTLQAIESANVVLLLIDATQGVTDQDA 282 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSD-KLNLLQ---DLRTKAIKNLPQIGDIYINTISGRT 360 I V +G AVVLA+NKWD V D + +L+ + R +K P ++ IS Sbjct: 283 HIAGYVLESGRAVVLAVNKWDAVDDYQRQMLERSIETRLSFLKFAP------MHFISAEK 336 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWL-QKTQLQNPPPTIFNRYNRLKYITQIQSS 419 +GL L S+++ +K ++ T L L + Q Q P T R +++Y Q + Sbjct: 337 RQGLGPLWNSIIQAHKAATCKMPTPVLTRLLMEAVQFQTPKKTGIYR-PKMRYAHQGGMN 395 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 PP +I + E+YKR+L R R F+L G P+R+ ++S NP+ K Sbjct: 396 PPVIVIHGNSLEHVTEAYKRFLEGRFRKEFNLVGTPLRIELKTSHNPFADK 446 >gi|308174076|ref|YP_003920781.1| GTPase [Bacillus amyloliquefaciens DSM 7] gi|307606940|emb|CBI43311.1| GTPase essential for ribosome 50S subunit assembly [Bacillus amyloliquefaciens DSM 7] gi|328552798|gb|AEB23290.1| GTP-binding protein Der [Bacillus amyloliquefaciens TA208] gi|328912406|gb|AEB64002.1| GTPase essential for ribosome 50S subunit assembly [Bacillus amyloliquefaciens LL3] Length = 436 Score = 253 bits (647), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 141/460 (30%), Positives = 244/460 (53%), Gaps = 29/460 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST+FNR+ +++++V + PG+TRDR+Y A FN++DT GI G Sbjct: 6 VAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGD 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + Q+ Q E+A++EA +I+F+++ + G+T D + L + P+++ NK+D Sbjct: 66 EPFLT-QIRQQAEIAMDEADVIIFMVNGREGVTSADEEVAKILYRTKKPVVLAVNKLDNT 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + N Y+ Y+L F E IS H LG +L + FK I K N++ Sbjct: 125 EMRANIYDFYALGFGEPYPISGTHGLGLGDLLDACAEHFKN---------IPETKYNDDV 175 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 ++ ++GRPNVGKS+L+N +LG R++ + +G TRD+V Sbjct: 176 -------------------VQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 ++ + I DTAGMRK ++ E+ E+ +V ++++++ + V+L+A +QD Sbjct: 217 AFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSDVVGVVLNAEEGILEQDK 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 RI G AVV+ +NKWD V + +++ ++ + + +S T + + Sbjct: 277 RIAGYAHEAGKAVVIIVNKWDAVDKDESTMKEFEQNIREHFQFLDYAPVLFMSALTTKRI 336 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 LM ++++ ++ R+ T+ LN + NP PT ++ Y TQ+ PPSF+ Sbjct: 337 HTLMPAIIKASENHSLRVQTNVLNDVIMDAVAMNPTPTHNGSRLKIYYATQVAVKPPSFV 396 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 +F P + SY+R+L NR+R F G PI++ ++ K Sbjct: 397 VFVNDPELMHFSYERFLENRIRDAFGFEGTPIKIFARARK 436 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 51/187 (27%), Positives = 92/187 (49%), Gaps = 15/187 (8%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI- 60 + ++G PNVGKS+L N ++ ++ +V N G TRD + N F IVDTAG+ Sbjct: 175 VVQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTAFTYNQQEFVIVDTAGMR 234 Query: 61 ADGKNCSIAKQMNDQTEL-AINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 GK ++ + L AI+ + ++ +++++ GI D I + + ++I+ N Sbjct: 235 KKGKVYETTEKYSVLRALKAIDRSDVVGVVLNAEEGILEQDKRIAGYAHEAGKAVVIIVN 294 Query: 120 KMDT--------RIAQRNFYEIYS-LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNH 170 K D + ++N E + LD+ ++ +SA L T +H+++ I K NH Sbjct: 295 KWDAVDKDESTMKEFEQNIREHFQFLDYAPVLFMSA---LTTKRIHTLMPAIIKAS-ENH 350 Query: 171 PLEMIEN 177 L + N Sbjct: 351 SLRVQTN 357 >gi|317056789|ref|YP_004105256.1| ribosome-associated GTPase EngA [Ruminococcus albus 7] gi|315449058|gb|ADU22622.1| ribosome-associated GTPase EngA [Ruminococcus albus 7] Length = 443 Score = 253 bits (647), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 146/454 (32%), Positives = 238/454 (52%), Gaps = 31/454 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTLFN+L+ +++++V + PG+TRDR+YG+ G F +VDT GI Sbjct: 6 VAVVGRPNVGKSTLFNKLIGQRLSIVEDTPGVTRDRIYGKCEWLGREFMLVDTGGIEPES 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N I QM Q+ELAI A++I+ + D K+G+T D + L K P+++ NK+D Sbjct: 66 NDIILSQMRRQSELAITSANVIILVTDIKSGVTSTDMEVAQMLLKSGKPVVLCVNKVDN- 124 Query: 125 IAQ--RNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 + + YE Y+L E +S+ H GT ++ + K Sbjct: 125 VGEPPMELYEFYNLGLGEPFPVSSVHGHGTGDMLDEVLKYL------------------- 165 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 P + + +VK +AV+G+PNVGKS+LINR+ G R++ +G TRD+ Sbjct: 166 --PDVEEDEDDEEAVK-------VAVIGKPNVGKSSLINRICGEERVIVSDIAGTTRDAT 216 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + DTAG+R+ S++ ES+E+ +V ++ +V + ++++DAT+ F +Q Sbjct: 217 DTDIENEFGKFVFIDTAGIRRKSKVLESVEKYSVLRAYMAVDRADVAVIVIDATVGFTEQ 276 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D ++ G A V+A+NKWD + + + R K + + + +S +TG Sbjct: 277 DSKVAGYAHEKGKACVVAVNKWDALEKDGKTMNEFRKKLENDFSFMSYVPFVFVSAKTGL 336 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 +D L + + + RI T LN L + PP+ R ++ Y+TQ+ ++PPS Sbjct: 337 RIDKLFEMIRYVKEQNSVRIATGKLNEVLAYATQRVQPPSDKGRRLKIYYMTQVSTNPPS 396 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 F+ F SY+RYL N++R FSL G PI Sbjct: 397 FVFFVNRAELFHFSYQRYLENQIRETFSLDGTPI 430 >gi|253999419|ref|YP_003051482.1| GTP-binding protein EngA [Methylovorus sp. SIP3-4] gi|313201441|ref|YP_004040099.1| small GTP-binding protein [Methylovorus sp. MP688] gi|253986098|gb|ACT50955.1| small GTP-binding protein [Methylovorus sp. SIP3-4] gi|312440757|gb|ADQ84863.1| small GTP-binding protein [Methylovorus sp. MP688] Length = 523 Score = 253 bits (647), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 157/471 (33%), Positives = 238/471 (50%), Gaps = 36/471 (7%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ TI +VG PNVGKSTLFNRL K + A+V + PG+TRDR YG+ I F +VDT G Sbjct: 1 MLPTIVLVGRPNVGKSTLFNRLTKSRDALVADLPGLTRDRHYGRGIGGDKPFLVVDTGGF 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + I K+M QT LAI+EA +++F++D + G+ P D I LRK P+++ NK Sbjct: 61 EPLVDSGILKEMAKQTLLAIDEADVVIFMVDGRNGLAPQDKVIADRLRKSQRPVLLAVNK 120 Query: 121 ---MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 M I F+E L + + IS+ H G +L + F + Sbjct: 121 TEGMQRAIVSAEFHE---LGLGDPLSISSAHGEGVRDLVELALADFPEPE---------- 167 Query: 178 NKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGI 237 + S+ ++A+VGRPNVGKSTL+N LLG R++ Q G Sbjct: 168 ----------------PEEENDGSRTPKVAIVGRPNVGKSTLVNALLGQERVIAFDQPGT 211 Query: 238 TRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATI 297 TRDS+ I I DTAG+RK ++ E++E+ +V K++Q++ I+++DA Sbjct: 212 TRDSIHIDLERNGKHYTIIDTAGVRKRGKVFEAIEKFSVIKTIQAIEEANVAILVVDAQE 271 Query: 298 PFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIY-INTI 356 +QD + + G A+V+A+NKWD + + +D + I Q D + I Sbjct: 272 GITEQDAHVAAYILEAGRALVVAINKWDGLKED---ERDWIKREIDRKLQFLDFAKFHYI 328 Query: 357 SGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQI 416 S +GL +L SV K +++T L L+ +Q+ PP +L+Y Q Sbjct: 329 SALRKKGLPELFTSVDGAYKAAMAKLSTPQLTRVLEDAIIQHQPPISKGIRPKLRYAHQG 388 Query: 417 QSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 S+PP +I + + +SYKRYL R F L+G P+R+ F NP+ Sbjct: 389 GSNPPIVVIHGNHVDGVKDSYKRYLEGVFRKAFQLTGTPLRVQFNQGANPF 439 >gi|114794390|pdb|2HJG|A Chain A, The Crystal Structure Of The B. Subtilis Yphc Gtpase In Complex With Gdp Length = 436 Score = 253 bits (647), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 146/460 (31%), Positives = 236/460 (51%), Gaps = 29/460 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST+FNR+ +++++V + PG+TRDR+Y A FN++DT GI G Sbjct: 6 VAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGD 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +A Q+ Q E+A +EA +I+F ++ + G+T D + L + P+++ NK+D Sbjct: 66 EPFLA-QIRQQAEIAXDEADVIIFXVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNT 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + N Y+ YSL F E IS H LG +L + + FK I K NEE Sbjct: 125 EXRANIYDFYSLGFGEPYPISGTHGLGLGDLLDAVAEHFKN---------IPETKYNEEV 175 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 ++ ++GRPNVGKS+L+N LG R++ + +G TRD+V Sbjct: 176 -------------------IQFCLIGRPNVGKSSLVNAXLGEERVIVSNVAGTTRDAVDT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 S+ + I DTAG RK ++ E+ E+ +V ++++++ E V+LD +QD Sbjct: 217 SFTYNQQEFVIVDTAGXRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDK 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 RI G AVV+ +NKWD V + ++ + + I S T + + Sbjct: 277 RIAGYAHEAGKAVVIVVNKWDAVDKDESTXKEFEENIRDHFQFLDYAPILFXSALTKKRI 336 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 L ++++ ++ R+ T+ LN + NP PT ++ Y TQ+ PPSF+ Sbjct: 337 HTLXPAIIKASENHSLRVQTNVLNDVIXDAVAXNPTPTHNGSRLKIYYATQVSVKPPSFV 396 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 +F P SY+R+L NR+R F G PI++ ++ K Sbjct: 397 VFVNDPELXHFSYERFLENRIRDAFGFEGTPIKIFARARK 436 >gi|228473598|ref|ZP_04058350.1| ribosome-associated GTPase EngA [Capnocytophaga gingivalis ATCC 33624] gi|228274970|gb|EEK13780.1| ribosome-associated GTPase EngA [Capnocytophaga gingivalis ATCC 33624] Length = 434 Score = 253 bits (647), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 148/462 (32%), Positives = 230/462 (49%), Gaps = 29/462 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +AIVG PNVGKST FNRLV+++ A+V + G+TRDR YG+ NG F+++DT G Sbjct: 1 MSAIVAIVGRPNVGKSTFFNRLVQRREAIVDSISGVTRDRHYGKTDWNGRDFSVIDTGGY 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 G + K+++ Q LAI EA I+FL D ++GI D I LR+ P + NK Sbjct: 61 VAGGDDIFQKEIDKQVNLAIEEADAIIFLTDVESGIMGIDEEIAQLLRRSKKPTFLAVNK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D + E Y+L F+EI IS+ + GT EL + K Sbjct: 121 VDNTKRAIDANEFYALGFEEIFPISSVNGSGTGELLDAVVK------------------- 161 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 + R AVVGRPN GKS+ IN L+G +R + +G TRD Sbjct: 162 ----------VLPEEEKVEEEPLPRFAVVGRPNAGKSSFINALIGEDRYIVTDIAGTTRD 211 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 ++ +N + DTAG+R+ +++ E LE +V +S++++ + ++L+DAT FE Sbjct: 212 AIDTRYNRFGFEFNLVDTAGIRRKAKVKEDLEFYSVMRSVRAIEHSDVCLLLVDATRGFE 271 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 QD I VV+ +NKWD+V + + K + D+ I IS T Sbjct: 272 GQDANIFWLAQRNKKGVVILVNKWDLVEKDTHTTKHFEEGIRKIIAPFTDVPIIFISALT 331 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 + + + +E+ RI TS LN ++ PPP +Y ++KY Q+ + Sbjct: 332 KQRIYKAIEKAVEVYNNRSQRIKTSVLNEYMLPIIEATPPPATKGKYIKIKYCMQLPTDL 391 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 P F+ F P I + Y+R++ N+LR F+ G+P+ + F+ Sbjct: 392 PQFVFFANLPQYIKDPYRRFVENKLREKFNFEGVPLDIFFRE 433 >gi|332663276|ref|YP_004446064.1| GTP-binding protein engA [Haliscomenobacter hydrossis DSM 1100] gi|332332090|gb|AEE49191.1| GTP-binding protein engA [Haliscomenobacter hydrossis DSM 1100] Length = 434 Score = 253 bits (647), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 148/459 (32%), Positives = 250/459 (54%), Gaps = 33/459 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST FNRL+ ++ ++V N G+TRDR YG + NG F +VDT G Sbjct: 5 VAIVGRPNVGKSTFFNRLIGERQSIVDNISGVTRDRQYGASYWNGKNFTVVDTGGFVPHS 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + +Q ++A++EA +I+FL+D GIT D + + LR+ P+ +V NK+D Sbjct: 65 DDVFEAAIREQVKIAVDEASVIIFLVDVTTGITDLDEEVANLLRRSKKPVFLVVNKVDN- 123 Query: 125 IAQRNFY--EIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 QR F E +SL F+ + +SA G+ E+ L+ + ++ ++ Sbjct: 124 -GQRLFEANEFWSLGFENTLFLSALTGSGSGEI----------------LDAVADHLSDD 166 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 E PKE+ S P R A+VG+PNVGKS+L N LLG +R + +G TRDS+ Sbjct: 167 EQPKED------------SLP-RFAIVGQPNVGKSSLTNALLGEDRNIVTEIAGTTRDSI 213 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + + + DTAG+RK +++ E+LE +V ++++++ C+ I+++DA E Q Sbjct: 214 DALYTKFDKEFILVDTAGIRKKAKVHENLEFYSVLRAIKAIEDCDVCILMIDAQTGVESQ 273 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D I +V+ +NKWD+V N +D+ + + D+ + +S Sbjct: 274 DQAIFRLAQRRNKGIVILVNKWDLVEKSTNTARDVEKVIKERIAPFTDVPVVFVSVHEKT 333 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 + + LE+ + ++ TS LN L + + PPP R+ ++KY+TQ+ + P+ Sbjct: 334 RIFRAIEVALEVYENRNRKVKTSELNELLLELIEKMPPPAHKGRHIKIKYVTQLPLAYPA 393 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 F FC P + E+Y+++L N+LR N++ +G+PI + F+ Sbjct: 394 FAFFCNHPAHVKENYRQFLENQLRKNYNFAGVPISIFFR 432 >gi|83747951|ref|ZP_00944982.1| GTP-binding protein [Ralstonia solanacearum UW551] gi|207723168|ref|YP_002253567.1| gtp-binding protein [Ralstonia solanacearum MolK2] gi|83725369|gb|EAP72516.1| GTP-binding protein [Ralstonia solanacearum UW551] gi|206588362|emb|CAQ35325.1| gtp-binding protein [Ralstonia solanacearum MolK2] Length = 447 Score = 253 bits (647), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 153/472 (32%), Positives = 241/472 (51%), Gaps = 39/472 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+ + F +DT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRSRDALVADMPGLTRDRHYGEGRVGERPFIAIDTGGFEPVA 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I +M QT A+ EA +++F++D + G+ P D I +LRK I++ NK + Sbjct: 65 KEGIVAEMAKQTRQAVVEADVVIFIVDGRLGLAPQDRVIADYLRKTGRRILLAVNKAEGM 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + Y L + IS+ H G +L + + Q + P E+ E + ++ Sbjct: 125 KYTAVATDFYELGLGDPRAISSAHGDGVRDL---VDEALDQAFSERP-ELAEAAQAHDHG 180 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 RIA+VGRPNVGKSTL+N L+G R++ G TRD++ + Sbjct: 181 -------------------TRIAIVGRPNVGKSTLVNALIGEERVIAFDMPGTTRDAIYV 221 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + P + DTAG+RK ++ E++E+ +V K++QS+ ++LLDA QD Sbjct: 222 DFERNGKPYTLIDTAGLRKRGKVFEAIEKFSVVKTLQSIADANVVVLLLDAQQDISDQDA 281 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSD------KLNLLQDLRTKAIKNLPQIGDIYINTISG 358 I + +G A+V+ +NKWD + K +L + L+ A N ++ IS Sbjct: 282 HIAGFIVESGRALVIGVNKWDGLDGHARDRIKHDLERKLQFLAFAN--------VHYISA 333 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKT-QLQNPPPTIFNRYNRLKYITQIQ 417 + G+ LM SV + ++ T L LQ+ + Q P +R +L+Y Q Sbjct: 334 KQRTGIGALMKSVDDAYAAAMVKLPTPKLTRVLQEAVEFQQPRRAGVSR-PKLRYAHQGG 392 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIK 469 S+PP +I + IPE+Y+R+L R R F L G P+R+ F+++KNPY + Sbjct: 393 SNPPIVVIHGNALSNIPETYRRFLEGRFRDAFQLKGTPLRIEFRTNKNPYAQ 444 >gi|34541718|ref|NP_906197.1| GTP-binding protein EngA [Porphyromonas gingivalis W83] gi|188994055|ref|YP_001928307.1| GTP-binding protein EngA [Porphyromonas gingivalis ATCC 33277] gi|41017000|sp|Q7MT48|DER_PORGI RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|34398036|gb|AAQ67096.1| GTP-binding protein, Era/ThdF family [Porphyromonas gingivalis W83] gi|188593735|dbj|BAG32710.1| GTP-binding protein EngA [Porphyromonas gingivalis ATCC 33277] Length = 437 Score = 253 bits (647), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 148/455 (32%), Positives = 234/455 (51%), Gaps = 28/455 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNRL + + A+V G TRDR YG+ NG F+IVDT G Sbjct: 5 VAIVGRPNVGKSTLFNRLTQSRQAIVAEEAGTTRDRQYGRVHWNGREFSIVDTGGWVVNS 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +++N Q +A+ EA ++LF+ D++ G+T D + LR+ P+I+V+NK+D Sbjct: 65 EDVFEEEINKQVYIAVEEADVVLFVADNQTGVTSLDEQVAEILRRSKKPVIVVANKVDNT 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + E YS + I+A GT +L + ++ Sbjct: 125 EDHYSASEFYSFGLGDPYCIAAVSGSGTGDLLDRVMELL--------------------- 163 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P EN S+ ++ RIA+VGRPN GKS+L+N +G +R + +G TRDS+ Sbjct: 164 PAENGQSDLDETLP------RIAIVGRPNAGKSSLLNAFIGEDRHIVTDIAGTTRDSIYT 217 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 +N + DTAG+RK ++ E LE +V +S++++ + +++LDAT E QDL Sbjct: 218 KYNKFGLNFYLVDTAGIRKRGKVNEDLEYYSVIRSIRAIENSDVCVLMLDATRGVESQDL 277 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKN-LPQIGDIYINTISGRTGEG 363 I + +V+ +NKWD+V DK + AI+ D + IS T + Sbjct: 278 NIFQIIQRNSKGLVVCINKWDLVEDKSQAVIKTFENAIRQRFAPFTDFPLLFISAMTKQR 337 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 + ++ +V ++ TRI T LN + PPP +Y ++KY+ Q+ ++ PSF Sbjct: 338 IFKVLETVNQVYAHRSTRIPTHKLNEVMLPIIEATPPPATKGKYIKIKYVMQLPTAVPSF 397 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 F P + E YKR+L N++R ++ G PI + Sbjct: 398 AFFANLPQWVKEPYKRFLENQIRAHWDFCGTPINI 432 >gi|325681451|ref|ZP_08160977.1| ribosome biogenesis GTPase Der [Ruminococcus albus 8] gi|324106941|gb|EGC01231.1| ribosome biogenesis GTPase Der [Ruminococcus albus 8] Length = 443 Score = 253 bits (647), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 142/454 (31%), Positives = 242/454 (53%), Gaps = 31/454 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTLFN+L+ +++++V + PG+TRDR+YG+ G F +VDT GI Sbjct: 6 VAVVGRPNVGKSTLFNKLIGQRLSIVEDTPGVTRDRIYGKCEWLGREFMLVDTGGIEPES 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + I QM Q+ELAI A++I+ + D K+G+T D + L K P+++ NK+D Sbjct: 66 DDIILSQMRRQSELAITSANVIILVTDIKSGVTSTDMEVAQMLMKSGKPVVLCVNKVDN- 124 Query: 125 IAQ--RNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 + + YE Y+L E +S+ H GT ++ + K + Sbjct: 125 VGEPPMELYEFYNLGLGEPFPVSSVHGHGTGDMLDEVLKYLPE----------------- 167 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 I++E ++ + +++AV+G+PNVGKS+LINR+ G R++ +G TRD+ Sbjct: 168 ------ISAE-----EDDDEAVKVAVIGKPNVGKSSLINRICGEERVIVSDIAGTTRDAT 216 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + DTAG+R+ S++ E++E+ +V ++ +V + ++++DAT+ F +Q Sbjct: 217 DTDIENEFGKFVFIDTAGIRRKSKVLETVEKYSVLRAYMAVDRADVAVIVIDATVGFTEQ 276 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D ++ G A V+A+NKWD + + + R K + + + +S +TG Sbjct: 277 DSKVAGYAHEKGKACVVAVNKWDALEKDGKTMNEFRKKLENDFSFMSYVPFVFVSAKTGL 336 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 +D L + + + RI T LN L + PP+ R ++ Y+TQ+ ++PP+ Sbjct: 337 RVDKLFEMIRYVKEKNSVRIATGKLNEVLAYATQRVQPPSDKGRRLKIYYMTQVSTNPPT 396 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 F+ F SY+RYL N++R FSL G PI Sbjct: 397 FVFFVNRAELFHFSYQRYLENQIRETFSLDGTPI 430 >gi|325479528|gb|EGC82624.1| ribosome biogenesis GTPase Der [Anaerococcus prevotii ACS-065-V-Col13] Length = 439 Score = 253 bits (647), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 147/460 (31%), Positives = 243/460 (52%), Gaps = 35/460 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + +VG NVGKSTLFNRLV KK ++ + G+TRDR+ + F +VDT G+ Sbjct: 6 VTLVGRTNVGKSTLFNRLVGKKKSITEDVSGVTRDRIVDKVEWQNNEFLLVDTGGLDISN 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + ++ Q E A+ E +ILF++D K G+ PYD I + +RK N P+IIV+NK+D+ Sbjct: 66 KEIMNTEVKSQVEKALLETDMILFVVDGKEGVNPYDIDIANEIRKYNKPVIIVANKLDSF 125 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + Y+ Y F ++ ISAE G +L I Sbjct: 126 KIPDDIYDFYQFGFDDLSMISAEQSKGLGDLLDKI------------------------- 160 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 I+ S+ + I RIA++G+PN GKS+L+N LL +R++ +G TRD+V Sbjct: 161 ----ISFIDFSAYEAIEDETRIAIIGKPNAGKSSLVNLLLNEDRMIVTDIAGTTRDAVDS 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 W + ++ + DTAG+R+ S++ E++E +++ +V + E + L+DA + +QD Sbjct: 217 YWTYNDNNYVLIDTAGLRRKSKVKENVEYYANQRTFDAVDSAEVCLFLIDANVGVTEQDA 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNL---PQIGDIYINTISGRTG 361 +I N A+++A+NKWD+V N +++L K L P ++I+ + + Sbjct: 277 KIAGYAHNNKKAMIIAVNKWDLVDKDTNTMRELEADIRKTLSFAPYAPIVFISVLENKR- 335 Query: 362 EGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 +D L+ ++ + TRI T LN+ LQ L NPPP + ++ Y++Q+ ++PP Sbjct: 336 --IDKLLELFEVVSNNYHTRIKTGVLNNILQDAILLNPPPQDKGKRLKIYYMSQVATAPP 393 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 FL+ + SY RYL N++R N+SL G+P F+ Sbjct: 394 KFLLSINDRELVHFSYMRYLENQIRQNYSLVGVPFSFVFK 433 >gi|313886089|ref|ZP_07819824.1| ribosome biogenesis GTPase Der [Porphyromonas asaccharolytica PR426713P-I] gi|312924435|gb|EFR35209.1| ribosome biogenesis GTPase Der [Porphyromonas asaccharolytica PR426713P-I] Length = 436 Score = 253 bits (647), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 153/453 (33%), Positives = 234/453 (51%), Gaps = 29/453 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNRL + + A+V G TRDR YG F+IVDT G Sbjct: 5 VAIVGRPNVGKSTLFNRLTRSRQAIVTEEAGTTRDRQYGHVTWCERTFSIVDTGGWVLRS 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +++N Q +A+ EA LILF++D G+T D I LR+ N P+I+V+NK D Sbjct: 65 DDVFEEEINKQVRIAVEEADLILFVVDILNGVTDLDDEIALMLRQTNKPVILVANKADNF 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + E YSL + ISA + T +L I ++ ++ + PL E Sbjct: 125 TQHNDAAEFYSLGIGDPYPISAINGSSTGDLLDHILELLPKEGNHEPL---------LEL 175 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P R A+VGRPN GKS+L+N L+G R + +SG TRDS+ Sbjct: 176 P-------------------RFAIVGRPNAGKSSLLNALIGEERNIVTDRSGTTRDSIFA 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 ++ N + DTAG+RK ++ E LE +V ++++++ + I+L+DAT E QD Sbjct: 217 EYDKFNQHFYLVDTAGIRKKGKVNEDLEYYSVIRAIRAIENADVCIMLIDATRGIEAQDA 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIK-NLPQIGDIYINTISGRTGEG 363 I + +V+ +NKWD+V DK +Q +AI+ D I IS + Sbjct: 277 NIFRVIQRNNKGLVVCVNKWDLVEDKSMPVQRTMEEAIRARFAPFTDFPIIFISALNKQR 336 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 + ++ + + + TRI T LN L + PPP+I +Y ++K++ Q+ ++ PSF Sbjct: 337 ILKVIETAQHVYDMRSTRIPTHQLNQVLLPLIEKTPPPSIKGKYIKIKFVQQLPTAVPSF 396 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 + P + E YKR+L N++R N+ G PI Sbjct: 397 AFYANLPQWVREPYKRFLENQIRKNWDFCGTPI 429 >gi|312796097|ref|YP_004029019.1| GTP-binding protein [Burkholderia rhizoxinica HKI 454] gi|312167872|emb|CBW74875.1| GTP-binding protein [Burkholderia rhizoxinica HKI 454] Length = 444 Score = 253 bits (646), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 160/469 (34%), Positives = 237/469 (50%), Gaps = 33/469 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+ + + +VDT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGERPYLVVDTGGFEPVA 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I +M QT A+ EA +++F++D + G+ P D I +LRK PI +V NK + Sbjct: 65 KDGILHEMARQTRQAVEEADVVVFVVDGRNGLAPQDKTIADYLRKTGRPIFLVVNKAEGM 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + Y L + ISA H G SE+ I + Y + + Sbjct: 125 KYSAVAADFYELGLGDPRAISAAHGDGVSEM---IGQALAVAYAD-------------RA 168 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P + + ++IA+VGRPNVGKSTL+N LLG R++ G TRDS+ I Sbjct: 169 PHDE---------AHAGHGVKIAIVGRPNVGKSTLVNALLGEERVIAFDLPGTTRDSIYI 219 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + P + DTAG+RK ++ E++E+ +V K++QS+ I+LLDA +QD Sbjct: 220 DFERQGRPYTLIDTAGLRKRGKVFEAVEKFSVVKTLQSIADANVVILLLDARQDISEQDA 279 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKA--IKNLPQIGDIYINTISGRTGE 362 I V G A+V+ +NKWD + + + RTKA + L + + IS Sbjct: 280 HIAGFVVEQGRALVIGVNKWDGLDEHVR----ERTKADLARKLKFLDFAKSHYISAAEKT 335 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWL-QKTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 G+ L+ SV ++ T L L Q Q P R +L+Y Q +PP Sbjct: 336 GIGALLRSVDAAYAAAMAKLPTPKLTRALIDAVQFQQPRRRGPVR-PKLRYAHQGGQNPP 394 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +I + I ++YKRYL R R F L+G P+R+ F+SS+NPY K Sbjct: 395 IIVIHGNALDAITDTYKRYLEGRFRETFGLTGTPLRIEFRSSRNPYADK 443 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 39/124 (31%), Positives = 60/124 (48%), Gaps = 3/124 (2%) Query: 202 KPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGM 261 KP+ IA+VGRPNVGKSTL NRL L G+TRD P + DT G Sbjct: 2 KPV-IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGERPYLVVDTGGF 60 Query: 262 RKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLAL 321 ++ + + + +++ Q+V + + ++D QD I D + TG + L + Sbjct: 61 EPVAK--DGILHEMARQTRQAVEEADVVVFVVDGRNGLAPQDKTIADYLRKTGRPIFLVV 118 Query: 322 NKWD 325 NK + Sbjct: 119 NKAE 122 >gi|309389060|gb|ADO76940.1| ribosome-associated GTPase EngA [Halanaerobium praevalens DSM 2228] Length = 438 Score = 253 bits (646), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 160/458 (34%), Positives = 240/458 (52%), Gaps = 33/458 (7%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AIVG PNVGKSTLFNRLV + A+V P +TRDR+YG+ G FN++DT GI Sbjct: 5 TVAIVGRPNVGKSTLFNRLVGGRRAIVEGEPNVTRDRIYGETEWLGKKFNVIDTGGIVLH 64 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 N I Q+ Q E+A+ EA LILF++DS+ G+T D I L + N +I+V NK++ Sbjct: 65 DNDKIKNQIKYQAEIAMEEADLILFVVDSRTGMTGVDEDIAQLLYRTNKEVILVVNKVED 124 Query: 124 RIAQRNF-YEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 Q +E YSL F ISAEH T +L + K P E +++K N Sbjct: 125 FSNQEEIGWEFYSLGFGTPFLISAEHGKNTGQLLDQV----KANLPEIETEEDDDDKIN- 179 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 IAV+G+PNVGKS+L+N L+G R++ G TRD+V Sbjct: 180 -----------------------IAVIGKPNVGKSSLVNHLIGKKRVIVSDMPGTTRDAV 216 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 WK+ DTAG+R+ SR+ E +E + ++++SV + ++++DA Q Sbjct: 217 DTMIKWKDISFNFIDTAGLRRKSRVKEDVEYYSNLRALRSVDRADAVLMMIDAQEGVTDQ 276 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D +I + G A+V+A+NKWD++ + + L + + + IS TGE Sbjct: 277 DKKIAGYAHDEGKAMVIAINKWDLMEKDSGTMDRYTDEVYYQLKFLNYVPVTYISALTGE 336 Query: 363 GLDDLMVSVLE-INKLWKTRITTSYLNSWL-QKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 +D+L+ S+LE + R+ T LN + + QL+ PP R ++ Y +Q+ P Sbjct: 337 RIDELL-SLLEFVVDQSNLRVKTGILNEVISEAVQLREPPSRKGKRL-KIYYGSQVGIKP 394 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 P+F+ F PN + +Y+RYL N LR F G P+ Sbjct: 395 PTFVFFVNDPNLMHFAYQRYLENVLREAFGYVGNPMHF 432 >gi|301299471|ref|ZP_07205746.1| ribosome-associated GTPase EngA [Lactobacillus salivarius ACS-116-V-Col5a] gi|300852934|gb|EFK80543.1| ribosome-associated GTPase EngA [Lactobacillus salivarius ACS-116-V-Col5a] Length = 436 Score = 253 bits (646), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 143/461 (31%), Positives = 242/461 (52%), Gaps = 31/461 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST+FNRL +++++V + PG+TRDR+Y + G FN++DT GI G Sbjct: 6 VAIVGRPNVGKSTIFNRLAGERISIVEDTPGVTRDRIYARTEWLGHPFNLIDTGGIDIGD 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + Q+ +Q E+AI EA +I+F++ K G+T D + L + + P+++ NK+D Sbjct: 66 EPFLT-QITEQAEIAIEEADVIIFVVSVKEGVTDADEKVARILYRTDKPVVLAVNKVDNP 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + Y+ YSL F E + ++ H +GT +L I K F Sbjct: 125 ELRADIYDFYSLGFGEPIPVAGTHGIGTGDLLDKIIKEF--------------------- 163 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 PK+ E S ++ + +GRPNVGKS+L+N +LG NR++ + G TRD++ Sbjct: 164 PKDATNEEDDS--------IKFSFIGRPNVGKSSLVNAILGENRVIVSNIEGTTRDAIDT 215 Query: 245 SWNWKNH-PIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + ++ + DTAG+RK ++ E+ E+ +V ++M+++ + V+L+A +QD Sbjct: 216 RFETEDGTKYTMIDTAGIRKKGKVYENTEKYSVLRAMRAIDRSDVVCVVLNAEEDIREQD 275 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 + G A+V+ +NKWD + + D + + I +S +T + Sbjct: 276 KHVAGYAHEAGRAIVIVVNKWDTLKKDNKTMSDFENLIRQEFQYLSYAPIVFVSAKTKQR 335 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 LD L + +N + RI+++ LN + NP PT + R+ Y TQ+ PP+F Sbjct: 336 LDKLPELIKRVNDNHEQRISSAVLNDVVMDAIAHNPTPTDNGKRLRIYYATQVAIKPPTF 395 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 +IF P + SY+R+L N++R F G PI + + K Sbjct: 396 VIFVNDPELMHFSYERFLENQIREAFDFEGTPIHIIERRRK 436 >gi|157692783|ref|YP_001487245.1| GTP-binding protein EngA [Bacillus pumilus SAFR-032] gi|166920097|sp|A8FEL8|DER_BACP2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|157681541|gb|ABV62685.1| GTPase [Bacillus pumilus SAFR-032] Length = 436 Score = 253 bits (646), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 142/460 (30%), Positives = 246/460 (53%), Gaps = 29/460 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST+FNR+ +++++V + PG+TRDR+Y A FN++DT GI G Sbjct: 6 VAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGD 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +A Q+ Q E+A++EA +I+F+++ + G+T D + L + P+++ NK+D Sbjct: 66 EPFLA-QIRHQAEIAMDEADVIIFMVNGRDGVTSADEEVAKILYRTKKPVVLAVNKLDNP 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + Y+ Y+L F E IS H LG +L + + FK N P + + +E+ Sbjct: 125 EMRSDVYDFYALGFGEPYPISGTHGLGLGDLLDAVAEHFK----NLP-----DTQYDEQV 175 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 ++ ++GRPNVGKS+L+N +LG +R++ + +G TRD+V Sbjct: 176 -------------------VQFCLIGRPNVGKSSLVNAMLGEDRVIVSNIAGTTRDAVDT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + I DTAGMRK ++ E+ E+ +V ++++++ + V+LD +QD Sbjct: 217 MFAYNQRDFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSDVVAVVLDGEEGIIEQDK 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 RI G AVV+ +NKWD V +++ ++ + + +S T + + Sbjct: 277 RIAGYAHEAGKAVVIVVNKWDAVEKDERTMKEFEQNIREHFQFLDYAPVLFMSALTKKRI 336 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 LM S++ ++ R+ T+ LN + NP PT + ++ Y TQ+ PPSF+ Sbjct: 337 HTLMPSIITASENHAMRVQTNILNDIIMDAVAMNPTPTHNGQRLKIYYATQVAIKPPSFV 396 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 +F P + SY+R+L NR+R F G PI++ ++ K Sbjct: 397 VFVNDPELMHFSYERFLENRIRDAFGFEGTPIKIFARARK 436 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 38/124 (30%), Positives = 62/124 (50%), Gaps = 2/124 (1%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI- 60 + ++G PNVGKS+L N ++ + +V N G TRD + N F IVDTAG+ Sbjct: 175 VVQFCLIGRPNVGKSSLVNAMLGEDRVIVSNIAGTTRDAVDTMFAYNQRDFVIVDTAGMR 234 Query: 61 ADGKNCSIAKQMNDQTEL-AINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 GK ++ + L AI+ + ++ ++D + GI D I + + ++IV N Sbjct: 235 KKGKVYETTEKYSVLRALKAIDRSDVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVN 294 Query: 120 KMDT 123 K D Sbjct: 295 KWDA 298 >gi|187935025|ref|YP_001885401.1| GTP-binding protein EngA [Clostridium botulinum B str. Eklund 17B] gi|238691598|sp|B2THQ9|DER_CLOBB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|187723178|gb|ACD24399.1| ribosome-associated GTPase EngA [Clostridium botulinum B str. Eklund 17B] Length = 438 Score = 253 bits (646), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 143/467 (30%), Positives = 250/467 (53%), Gaps = 42/467 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFN+L K++++V + PG+TRDR+Y +A F ++DT GI Sbjct: 6 VAIVGRPNVGKSTLFNKLAGKRISIVQDTPGVTRDRVYAEAEWLNYNFTMIDTGGIEPTN 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + I KQM Q +AI A +I+F++D K G+T D + + LRK P+++V NK+D+ Sbjct: 66 DDIIMKQMRRQANIAIETADVIVFIVDGKEGLTAADQEVANMLRKSKKPVVLVVNKIDSL 125 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + N +E Y+L + + ISA LG ++ ++E+ R + Sbjct: 126 KYEENSWEFYNLGIGDPITISASQALGLGDMLD---------------RVVEHFDRFDAD 170 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 +E+ + +RIA++G+PNVGKS+LIN+LLG RL+ +G TRD++ Sbjct: 171 AEED-------------EYIRIAMIGKPNVGKSSLINKLLGEERLIVSDVAGTTRDAIDS 217 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + DTAG+R+ S++ E +E+ +V ++ S+ + I+++DA +QD Sbjct: 218 YLETEQGKFILIDTAGLRRKSKVKEEIERYSVIRTYASIEKADVCILMIDAQDGVTEQDE 277 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTK---AIKNLPQIGDIYINTISGRTG 361 +I+ A+++ +NKWD+V ++ + ++K +P ++I+ ++G+ Sbjct: 278 KIIGYAHELNKAIIVLVNKWDLVEKDDKTMEKFKKDLQGSLKFMPYAEYLFISALTGQRT 337 Query: 362 EGLDDLMVSVLEINKL----WKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 +LE+ K + R++T LN + K L PP + + ++ Y TQ+ Sbjct: 338 H-------KILELAKKCYNNYNKRVSTGILNDVISKAILMKEPPIVSLKRMKIYYATQVA 390 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 + PP F+ F + SY+RYL N+LR +F G I++ ++ K Sbjct: 391 TKPPKFVFFVNDASASHFSYERYLENQLRNSFDFKGTGIQIEYRQRK 437 >gi|297571444|ref|YP_003697218.1| ribosome-associated GTPase EngA [Arcanobacterium haemolyticum DSM 20595] gi|296931791|gb|ADH92599.1| ribosome-associated GTPase EngA [Arcanobacterium haemolyticum DSM 20595] Length = 504 Score = 253 bits (646), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 151/469 (32%), Positives = 247/469 (52%), Gaps = 36/469 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAG---IA 61 +AI+G PNVGKSTL NR+V +++AVV + PG+TRDR+ A GV F I+DT G + Sbjct: 69 LAILGRPNVGKSTLVNRIVGQRVAVVQDTPGVTRDRVKYDAEWAGVDFTIMDTGGWEAVV 128 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 +G I K ++D +E AINEA +++ ++D+ G T D + LR+ P+I+ +NK+ Sbjct: 129 EG----IDKSVSDSSEQAINEADVVMLVVDATVGATDTDERMVRLLRRSGKPVILAANKV 184 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D+ + + +++L E ISA H GT +L K+ Sbjct: 185 DSPQGESDAAALWNLGLGEPHPISALHGRGTGDLLHAAVKML------------------ 226 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 P+ + + + + P R+A+VGRPNVGKS+L+N+L G NR++ +G TRD Sbjct: 227 ---PEVSAVALARPD----NGPRRVALVGRPNVGKSSLLNQLAGSNRVVVNELAGTTRDP 279 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 V P DTAG+R+ +T+ + ++ ++ E +VL+DA+ P + Sbjct: 280 VDEVIELDGQPWTFVDTAGVRRRVHLTKGADYYATLRTQSAIEKAELGLVLMDASEPMAE 339 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTG 361 QD+R+V V + G AVV+ +NKWD+V ++ L +L + + L QI +S +TG Sbjct: 340 QDIRVVQQVIDAGRAVVVIMNKWDLVEEERRL--ELDREFERELVQIQWAERINLSAKTG 397 Query: 362 EGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 + L ++ + W RI T LN++L + Q NP P + R+ + +Q+ + PP Sbjct: 398 WHTNRLTRAMSTALESWDMRIPTGKLNAFLGELQAANPHPVRSGKQPRILFASQVANRPP 457 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 F++F T Y+R++ NRLR F G P+ + + + KK Sbjct: 458 RFVLFTT--GFFDHGYRRFIENRLRREFGFVGTPVEISVRPRQKRQRKK 504 >gi|315038199|ref|YP_004031767.1| GTP-binding protein EngA [Lactobacillus amylovorus GRL 1112] gi|325956651|ref|YP_004292063.1| GTP-binding protein Der [Lactobacillus acidophilus 30SC] gi|312276332|gb|ADQ58972.1| GTP-binding protein EngA [Lactobacillus amylovorus GRL 1112] gi|325333216|gb|ADZ07124.1| GTP-binding protein Der [Lactobacillus acidophilus 30SC] gi|327183476|gb|AEA31923.1| GTP-binding protein Der [Lactobacillus amylovorus GRL 1118] Length = 435 Score = 253 bits (646), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 139/460 (30%), Positives = 245/460 (53%), Gaps = 30/460 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNR++ +++A+V + PG+TRDR Y QA G F+++DT GI + Sbjct: 6 VAIVGRPNVGKSTLFNRIINQRLAIVEDKPGVTRDRNYAQAEWMGHKFDLIDTGGIT-WE 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I +++ Q E+AI EA +I+ L +T D + L + P+I+ NK D Sbjct: 65 GGKIEEEIRAQAEIAIEEADVIVMLTSVVNHMTDLDERVAHLLYRTQKPVILAVNKADNP 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + Y+ YSL + + +S+ H G +L I K+P ++++ Sbjct: 125 EQRNDIYDFYSLGLGDPIPVSSSHGTGIGDLLDAIV----DKFPE-----------DKDT 169 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 E++ S +V+GRPNVGKS+++N+LLG +R++ ++ G TRD+V Sbjct: 170 QAEDVIS--------------FSVIGRPNVGKSSIVNKLLGEDRVIVANEEGTTRDAVDT 215 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + ++ DTAG+R+ ++ E E+ +V ++M ++ + +++LDA+ +QD Sbjct: 216 PFTKDGVKFKVVDTAGIRRRGKVYEKTEKYSVLRAMSAIERSDVVLLVLDASTGIREQDK 275 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 + G +++ +NKWD+ ++ + + + I +S +TG+ L Sbjct: 276 HVAGYAHEAGRGIIIVVNKWDLPKKNSTSAKEFEREIKEEFQYLDYAPILFVSAKTGQRL 335 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 D + V E+ RI +S LN L + P P + + R+ Y+TQ+ ++PP+F+ Sbjct: 336 DQIPSMVKEVYDNQNQRIQSSVLNDLLLEASKLVPTPMVKGKRLRVYYMTQVSTNPPTFV 395 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 +F P + SY+R+LIN+LR NF +G PI++ + K Sbjct: 396 VFVNDPELMHFSYERFLINQLRQNFDFTGTPIKIIPRKRK 435 Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 48/178 (26%), Positives = 89/178 (50%), Gaps = 21/178 (11%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI- 60 + + +++G PNVGKS++ N+L+ + +V N G TRD + +GV F +VDTAGI Sbjct: 174 VISFSVIGRPNVGKSSIVNKLLGEDRVIVANEEGTTRDAVDTPFTKDGVKFKVVDTAGIR 233 Query: 61 ------ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPI 114 + S+ + M+ AI + ++L ++D+ GI D + + + I Sbjct: 234 RRGKVYEKTEKYSVLRAMS-----AIERSDVVLLVLDASTGIREQDKHVAGYAHEAGRGI 288 Query: 115 IIVSNKMD--------TRIAQRNFYEIYS-LDFKEIVEISAEHDLGTSELHSVIFKIF 163 IIV NK D + +R E + LD+ I+ +SA+ ++ S++ +++ Sbjct: 289 IIVVNKWDLPKKNSTSAKEFEREIKEEFQYLDYAPILFVSAKTGQRLDQIPSMVKEVY 346 >gi|289423092|ref|ZP_06424907.1| ribosome-associated GTPase EngA [Peptostreptococcus anaerobius 653-L] gi|289156423|gb|EFD05073.1| ribosome-associated GTPase EngA [Peptostreptococcus anaerobius 653-L] Length = 439 Score = 253 bits (646), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 141/460 (30%), Positives = 244/460 (53%), Gaps = 28/460 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFN+L K+++V + PG+TRDR++G+ F I+DT GI Sbjct: 7 VAIVGRPNVGKSTLFNKLTGTKISIVEDTPGVTRDRIFGEVEWLNKYFTIIDTGGIEPES 66 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + I QM +Q LA++ AH+ILF++D K G+T D + LRK N P+++V NK+D++ Sbjct: 67 DDIIISQMRNQAMLAVDMAHVILFVVDGKGGLTAADREVADILRKTNKPVLLVVNKIDSK 126 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 N Y+ Y L +S + +G +L I K N P Sbjct: 127 SQWDNVYDFYELGLDVPFAVSGANAIGLGDLLDEIVK-------NFP------------- 166 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 + + +E V +++A+ G+PN GKS+++N +LG R++ +G TRD++ Sbjct: 167 --DGLNTEYDEDV------IKVAITGKPNAGKSSILNNILGEERVIVSPIAGTTRDAIDT 218 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + ++ + DTAG+R+ S++ E++E+ +V +SM +V + ++++DAT +QD Sbjct: 219 YFEQGDNKFLLIDTAGIRRRSKVYENVERFSVIRSMSAVDRADVVLIVIDATEGVTEQDT 278 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 +I + G A + +NKWD+V + + + + P + I +S T + + Sbjct: 279 KIAGIAHDEGKACIFVVNKWDLVEKDNKTMGNYKMSIREKFPFMAYAPIVFVSAVTNQRI 338 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 ++ +V+ ++ R++TS LN + + + N PP+ R ++ Y TQ PP+F Sbjct: 339 AKILETVVYVSSEQNKRVSTSVLNQVIAEAVMLNQPPSDKGRRLKIYYGTQTGVKPPTFT 398 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 +F SY RY+ NR+R NF G IR+ ++ + Sbjct: 399 LFINDKELTHFSYTRYIENRMRENFGYEGTSIRIEYKQKR 438 >gi|90961863|ref|YP_535779.1| GTP-binding protein EngA [Lactobacillus salivarius UCC118] gi|227890889|ref|ZP_04008694.1| GTP-binding protein EngA [Lactobacillus salivarius ATCC 11741] gi|122448999|sp|Q1WTQ4|DER_LACS1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|90821057|gb|ABD99696.1| GTP-binding protein [Lactobacillus salivarius UCC118] gi|227867298|gb|EEJ74719.1| GTP-binding protein EngA [Lactobacillus salivarius ATCC 11741] gi|300214593|gb|ADJ79009.1| GTP-binding protein engA [Lactobacillus salivarius CECT 5713] Length = 436 Score = 253 bits (646), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 143/461 (31%), Positives = 242/461 (52%), Gaps = 31/461 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST+FNRL +++++V + PG+TRDR+Y + G FN++DT GI G Sbjct: 6 VAIVGRPNVGKSTIFNRLAGERISIVEDTPGVTRDRIYARTEWLGHPFNLIDTGGIDIGD 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + Q+ +Q E+AI EA +I+F++ K G+T D + L + + P+++ NK+D Sbjct: 66 EPFLT-QITEQAEIAIEEADVIIFVVSVKEGVTDADEKVARILYRTDKPVVLAVNKVDNP 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + Y+ YSL F E + ++ H +GT +L I K F Sbjct: 125 ELRADIYDFYSLGFGEPIPVAGTHGIGTGDLLDKIIKEF--------------------- 163 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 PK+ E S ++ + +GRPNVGKS+L+N +LG NR++ + G TRD++ Sbjct: 164 PKDATNEEDDS--------IKFSFIGRPNVGKSSLVNAILGENRVIVSNIEGTTRDAIDT 215 Query: 245 SWNWKNH-PIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + ++ + DTAG+RK ++ E+ E+ +V ++M+++ + V+L+A +QD Sbjct: 216 RFETEDGTKYTMIDTAGIRKKGKVYENTEKYSVLRAMRAIDRSDVVCVVLNAEEGIREQD 275 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 + G A+V+ +NKWD + + D + + I +S +T + Sbjct: 276 KHVAGYAHEAGRAIVIVVNKWDTLKKDNKTMSDFENLIRQEFQYLSYAPIVFVSAKTKQR 335 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 LD L + +N + RI+++ LN + NP PT + R+ Y TQ+ PP+F Sbjct: 336 LDKLPELIKRVNDNHEQRISSAVLNDVVMDAIAHNPTPTDNGKRLRIYYATQVAIKPPTF 395 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 +IF P + SY+R+L N++R F G PI + + K Sbjct: 396 VIFVNDPELMHFSYERFLENQIREAFDFEGTPIHIIERRRK 436 >gi|116333425|ref|YP_794952.1| GTP-binding protein EngA [Lactobacillus brevis ATCC 367] gi|122269888|sp|Q03SA1|DER_LACBA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|116098772|gb|ABJ63921.1| Predicted GTPase [Lactobacillus brevis ATCC 367] Length = 435 Score = 253 bits (646), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 143/470 (30%), Positives = 252/470 (53%), Gaps = 41/470 (8%) Query: 1 MIY-TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAG 59 M Y +AIVG PNVGKSTLFNR+ +++++V + PG+TRDR+Y +A G F ++DT G Sbjct: 1 MAYPVVAIVGRPNVGKSTLFNRIAGERISIVEDTPGVTRDRIYSRAEWLGTEFRMIDTGG 60 Query: 60 IADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 I D + Q+ Q E+AI+EA +I+F++ + GIT D + L + + P+I+ N Sbjct: 61 I-DMGDEPFLTQITQQAEIAIDEADVIVFIVSAPEGITDADEKVAKILYRADKPVILAVN 119 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNK 179 K D + + Y+ YSL F + +S H LG +L + K F +K Sbjct: 120 KADNPEVRESIYDFYSLGFGDPYPVSGVHGLGLGDLLDAVVKEFPEK------------- 166 Query: 180 RNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITR 239 + +PK++ +R +++GRPNVGKS+L+N +LG R++ + +G TR Sbjct: 167 --DGAPKDD--------------SIRFSLIGRPNVGKSSLVNAMLGEERVIVSNIAGTTR 210 Query: 240 DSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPF 299 D++ + + + DTAG+RK ++ E+ E+ +V ++M+++ + +V+L+A Sbjct: 211 DAIDTKFVADDTKFTMVDTAGIRKRGKVYENTERYSVMRAMRAIDDSDVVLVVLNAEEGI 270 Query: 300 EKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINT---- 355 +QD R+ G +++ +NKWD + + L D +NL +I Y++ Sbjct: 271 REQDKRVAGYAHEAGRGIIILVNKWDTLKKDNHTLTDF-----QNLIRIEFQYLSYAPII 325 Query: 356 -ISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYIT 414 +S +TG+ L+ L + + R+ ++ LN + NP P+ + R+ Y T Sbjct: 326 FVSAKTGQRLEQLPEMIKRVADNHNKRVQSATLNDVVMDAIALNPTPSDNGKRLRVYYAT 385 Query: 415 QIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 Q+ +PP+F++F P + SY+R+L N++R +F G PI + ++ K Sbjct: 386 QVAIAPPTFVVFVNDPKMMHFSYERFLENQIREHFDFEGTPIHLIERARK 435 >gi|330997747|ref|ZP_08321586.1| ribosome biogenesis GTPase Der [Paraprevotella xylaniphila YIT 11841] gi|329569846|gb|EGG51604.1| ribosome biogenesis GTPase Der [Paraprevotella xylaniphila YIT 11841] Length = 437 Score = 253 bits (645), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 154/454 (33%), Positives = 241/454 (53%), Gaps = 30/454 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNRL + + A+V + G TRDR YG++ G F+++DT G Sbjct: 5 VAIVGRPNVGKSTLFNRLTQTRHAIVSDEAGTTRDRQYGKSEWTGCEFSVIDTGGWVVNS 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +++ Q LA EA ++LFL+D + G+T D A+ + LR+ P+I+V+NK DT Sbjct: 65 DDIFEEEIRKQVTLATEEADVVLFLVDVRNGVTDLDEAVANILRRTKKPVILVANKADTN 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + E Y+L + ISA GT EL I K+P K ++ Sbjct: 125 EWIYSAAEFYALGLGDPYCISAATGSGTGELLDQIV----SKFP----------KTIDDE 170 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 ENI R AVVGRPNVGKS+LIN +G R + +G TRDS+ Sbjct: 171 TDENIP--------------RFAVVGRPNVGKSSLINAFIGEERNIVTDIAGTTRDSIYT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + DTAG+R+ +++TE LE +V +S++++ + I++LDA E QDL Sbjct: 217 RYTKFGFDFYLVDTAGIRRKNKVTEDLEYYSVMRSIRAIENSDVCILMLDAERGIEAQDL 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKN-LPQIGDIYINTISGRTGEG 363 I + ++V+ +NKWD+V +K ++ + AI+N + D I S T + Sbjct: 277 NIFQLIQRNNKSLVVVVNKWDLVEEKNTVVMNEYEYAIRNRMAPFDDFPIIFASALTKQR 336 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP-PS 422 + ++ + E+ + K R+ TS LN + PPP+I +Y ++KY Q+ + PS Sbjct: 337 IFKVLETAKEVYQNRKKRVPTSKLNEEMLPLIEAYPPPSIKGKYIKIKYCMQLPDTQIPS 396 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 F+ + P + E Y+R+L N++R + SG PI Sbjct: 397 FVFYANLPQYVKEPYRRFLENKIRERWDFSGTPI 430 >gi|186476174|ref|YP_001857644.1| GTP-binding protein EngA [Burkholderia phymatum STM815] gi|238691310|sp|B2JIU7|DER_BURP8 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|184192633|gb|ACC70598.1| small GTP-binding protein [Burkholderia phymatum STM815] Length = 446 Score = 253 bits (645), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 158/468 (33%), Positives = 244/468 (52%), Gaps = 29/468 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGV-IFNIVDTAGIADG 63 IA+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+ + G + +VDT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGGERPYLVVDTGGFEPV 64 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 I +M QT A+ E+ +I+F++D + G+ P D +I +LRK PI +V NK + Sbjct: 65 AKDGILFEMARQTRQAVEESDVIVFIVDGRNGLAPQDKSIADYLRKTGRPIFLVVNKAEG 124 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + Y L + ISA H G +E+ I + Y P E +EE Sbjct: 125 MKYTNVAADFYELGLGDPRAISAAHGDGVTEM---INEALDVAYAGQPEES------DEE 175 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 + I +IA+VGRPNVGKSTL+N L+G +R++ G TRDS+ Sbjct: 176 KAQHGI---------------KIAIVGRPNVGKSTLVNTLIGEDRVIAFDMPGTTRDSIY 220 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + + + + DTAG+RK ++ E++E+ +V K++QS+ I+LLDA +QD Sbjct: 221 VDFERQGKKYTLIDTAGLRKRGKVFEAIEKFSVVKTLQSISDANVVILLLDARQDISEQD 280 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 I V G A+V+ +NKWD + ++ + ++ + L + + IS G Sbjct: 281 AHIAGFVVEQGRALVVGVNKWDGLDP--HVRERTKSDLQRKLKFLEFAKFHFISAAEKTG 338 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWL-QKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 + LM SV + K +++ T L L + + Q P R +L+Y Q +PP Sbjct: 339 IGPLMRSVDDAYKAAMSKLPTPKLTRALIEAVEFQQPRRRGPVR-PKLRYAHQGGQNPPI 397 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +I + + ++YKRYL NR R F+L+G P+R+ F+SS NPY K Sbjct: 398 IVIHGNALDAVTDTYKRYLENRFRETFALTGTPLRIEFRSSTNPYADK 445 >gi|256425494|ref|YP_003126147.1| small GTP-binding protein [Chitinophaga pinensis DSM 2588] gi|256040402|gb|ACU63946.1| small GTP-binding protein [Chitinophaga pinensis DSM 2588] Length = 441 Score = 253 bits (645), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 147/460 (31%), Positives = 244/460 (53%), Gaps = 25/460 (5%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 +T+AIVG PNVGKSTLFNRL++++ A+V + G+TRDR YG A NG FN++DT G Sbjct: 4 FTVAIVGRPNVGKSTLFNRLLEQRKAIVDDVSGVTRDRQYGVADWNGKSFNVIDTGGFVS 63 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 +++ Q ++A+ EA+L+LF+ D GIT D + LR+ + P+I+V NK+D Sbjct: 64 RSEDVFEREIRKQVKIAMEEANLLLFMCDVATGITDLDAEMADILRRSSKPVILVVNKVD 123 Query: 123 TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 Q E YSL F+++ +S+ G+ EL I Sbjct: 124 NATRQLEATEFYSLGFEKVFFMSSMSGSGSGELLDEI---------------------TG 162 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 + P+++ T E + + + K IA++G+PNVGKS+L+N L+G R + G TRD++ Sbjct: 163 QIPEDDETREAIEAAEALPK---IAIIGQPNVGKSSLLNALIGEERNIVSDIPGTTRDTI 219 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + + DTAG+R+ +++ E LE +V ++++++ + ++LLDAT Q Sbjct: 220 HTHYKMFQKDFVLIDTAGLRRKNKVQEDLEFYSVIRAIKAMDEADVCLLLLDATKGVTAQ 279 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDK-LNLLQDLRTKAIKNLPQIGDIYINTISGRTG 361 DL I G +V+ +NKWD++ DK N +D L D+ + S Sbjct: 280 DLSIFSLAGRKGKGLVVLVNKWDLIEDKSTNSARDYEKDLKGRLAPFSDVPVIFTSVVEK 339 Query: 362 EGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 + + + L + K ++ TS LN + K PP + ++KY+TQ+ + P Sbjct: 340 QRIFKAIEEALRVYDNRKRKVQTSKLNEVMLKAIESFHPPVVRGIPIKIKYVTQLPTFTP 399 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 +F FC P+ + + Y+ YL N+LR NF G+P+++ F+ Sbjct: 400 AFAFFCNLPDDVKQPYRNYLENQLRSNFDFEGVPLKLFFR 439 >gi|150016018|ref|YP_001308272.1| GTP-binding protein EngA [Clostridium beijerinckii NCIMB 8052] gi|189037141|sp|A6LSI6|DER_CLOB8 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|149902483|gb|ABR33316.1| small GTP-binding protein [Clostridium beijerinckii NCIMB 8052] Length = 438 Score = 253 bits (645), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 149/461 (32%), Positives = 238/461 (51%), Gaps = 30/461 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFN+L K++++V + PG+TRDR+Y +A F ++DT GI Sbjct: 6 VAIVGRPNVGKSTLFNKLAGKRISIVQDTPGVTRDRVYAEAEWLRYNFTMIDTGGIEPEN 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N I KQM Q +AI A +I+F++D K G+T D+ + + LRK P+++V NK+D Sbjct: 66 NDIIIKQMRRQANIAIETADVIIFIVDGKEGLTAADNEVATMLRKSKKPVVLVVNKVDNL 125 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF-KQKYPNHPLEMIENNKRNEE 183 + N YE Y+L + + ISA LG ++ + K F K Y E I Sbjct: 126 KDENNAYEFYNLGIGDPMAISAGQGLGLGDMLDEVVKHFDKSIYDEEDDEYI-------- 177 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 RIA++G+PNVGKS+LIN+LLG R++ G TRDS+ Sbjct: 178 ---------------------RIAMIGKPNVGKSSLINKLLGEERVIVSDIPGTTRDSID 216 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + + DTAG+R+ S++ E +E+ +V ++ ++ + I+++DAT +QD Sbjct: 217 SHLETEEGKFILVDTAGLRRKSKVKEEIERYSVIRTYAAIERADVCILMIDATEGITEQD 276 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 +I+ A+++ +NKWD+V L + NL + IS TG+ Sbjct: 277 EKIIGYAHELRKAIMVIVNKWDLVEKDDKTLDKFKKDLQSNLKFLSYAEYLFISALTGQR 336 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 + ++ + RI+T LN + K L PP + + ++ Y TQ+ + PP F Sbjct: 337 TNKVLKLARYCYDNYNKRISTGILNDVISKAVLMKEPPIVGIKRMKIYYATQVATKPPKF 396 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 + F + SY+RYL N+LR +F G I++ ++ K Sbjct: 397 VFFINDESARHFSYERYLENQLRDSFDFKGTGIQIEYRQRK 437 >gi|323435972|ref|ZP_01049346.2| GTP-binding protein EngA [Dokdonia donghaensis MED134] gi|321496287|gb|EAQ39318.2| GTP-binding protein EngA [Dokdonia donghaensis MED134] Length = 450 Score = 253 bits (645), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 145/457 (31%), Positives = 235/457 (51%), Gaps = 28/457 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST FNRLV+++ A+V G+TRDR YG+ NG F ++DT G G Sbjct: 20 VAIVGRPNVGKSTFFNRLVQRREAIVDAVSGVTRDRHYGKTDWNGREFTVIDTGGYVVGS 79 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +++ Q ELAI+EA I+F++D + GIT D + + LR+ PI + NK+D Sbjct: 80 DDIFEAEIDKQVELAIDEADAIIFMVDVEHGITGMDEEVANLLRRSKKPIFLAVNKVDNN 139 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + E Y+L + I+A + GT +L + + L E +E Sbjct: 140 KRAADAVEFYNLGLGDFYTIAATNGSGTGDLLDAVVE---------ALPEKEEESEEDEL 190 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P R AVVGRPN GKS+ IN L+G R + +G TRD++ Sbjct: 191 P-------------------RFAVVGRPNAGKSSFINALIGEERYIVTDIAGTTRDAMDT 231 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 +N + DTAG+R+ +++ E LE +V +S++++ + ++++DAT F+ Q Sbjct: 232 KYNRYGFEFNLVDTAGIRRKAKVKEDLEFYSVMRSVRAIEHADVVLLVVDATRGFDGQVQ 291 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 I +V+ +NKWD+V K N +++ + + D+ I IS + + Sbjct: 292 NIFWLAERNRKGIVILVNKWDLVEKKTNTMKEFEKHIRQQIEPFTDVPIVFISVLEKQRI 351 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 + + +++ + RI TS LN + PPP I +Y ++KY Q+ + P F Sbjct: 352 FKAIETAVKVYESKTKRIKTSELNEFFLPLVEAFPPPAIKGKYVKIKYCMQLPTPQPQFA 411 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 +FC P + E Y+R+L N+LR + SG+PI + F+ Sbjct: 412 LFCNLPQYLKEGYRRFLENKLRAAYDFSGVPISIYFR 448 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 49/176 (27%), Positives = 80/176 (45%), Gaps = 11/176 (6%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 KN + +A+VGRPNVGKST NRL+ + + SG+TRD +W + D Sbjct: 12 KNFTMSTIVAIVGRPNVGKSTFFNRLVQRREAIVDAVSGVTRDRHYGKTDWNGREFTVID 71 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 T G S + E + K+ ++ + I ++D D + + + + + Sbjct: 72 TGGYVVGS--DDIFEAEIDKQVELAIDEADAIIFMVDVEHGITGMDEEVANLLRRSKKPI 129 Query: 318 VLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 LA+NK D + ++ NL +GD Y TI+ G G DL+ +V+E Sbjct: 130 FLAVNKVDNNKRAADAVE------FYNL-GLGDFY--TIAATNGSGTGDLLDAVVE 176 >gi|227893492|ref|ZP_04011297.1| GTP-binding protein EngA [Lactobacillus ultunensis DSM 16047] gi|227864717|gb|EEJ72138.1| GTP-binding protein EngA [Lactobacillus ultunensis DSM 16047] Length = 435 Score = 253 bits (645), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 138/460 (30%), Positives = 244/460 (53%), Gaps = 30/460 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNR++ +++A+V + PG+TRDR Y QA G F+++DT GI + Sbjct: 6 VAIVGRPNVGKSTLFNRIINQRLAIVEDKPGVTRDRNYAQAEWMGHKFDLIDTGGIT-WE 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I +++ Q E+AI EA +I+ L +T D + L + P+I+ NK D Sbjct: 65 GGKIEEEIRAQAEIAIEEADVIVMLTSVVNHMTDLDERVAHLLYRTKKPVILAVNKADNP 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + Y+ YSL + + +S+ H G +L E++ N ++++ Sbjct: 125 EQRNDIYDFYSLGLGDPIPVSSSHGTGIGDLLD---------------EIVNNFPEDKDT 169 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 E++ S +V+GRPNVGKS+++N+LLG +R++ ++ G TRD+V Sbjct: 170 QSEDVIS--------------FSVIGRPNVGKSSIVNKLLGEDRVIVANEEGTTRDAVDT 215 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + ++ DTAG+R+ ++ E E+ +V ++M ++ + +++LDA+ +QD Sbjct: 216 PFTKNGVKYKVVDTAGIRRRGKVYEKTEKYSVLRAMSAIERSDVVLLVLDASTGIREQDK 275 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 + G +++ +NKWD++ ++ + + I +S +TG+ L Sbjct: 276 HVAGYAHEAGRGIIIVVNKWDLLKKNSTSAKEFEREIRAEFQYLDYAPILFVSAKTGQRL 335 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 D + V E+ RI +S LN L + P P + + R+ Y+TQ+ ++PP+F+ Sbjct: 336 DQIPTLVKEVYDNQNQRIQSSVLNDLLLEASKLVPTPMVKGKRLRVYYMTQVSTNPPTFV 395 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 +F P + SY+R+LIN+LR NF G PI++ + K Sbjct: 396 VFVNDPELMHFSYERFLINQLRQNFDFKGTPIKIIPRKRK 435 Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 47/178 (26%), Positives = 88/178 (49%), Gaps = 21/178 (11%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI- 60 + + +++G PNVGKS++ N+L+ + +V N G TRD + NGV + +VDTAGI Sbjct: 174 VISFSVIGRPNVGKSSIVNKLLGEDRVIVANEEGTTRDAVDTPFTKNGVKYKVVDTAGIR 233 Query: 61 ------ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPI 114 + S+ + M+ AI + ++L ++D+ GI D + + + I Sbjct: 234 RRGKVYEKTEKYSVLRAMS-----AIERSDVVLLVLDASTGIREQDKHVAGYAHEAGRGI 288 Query: 115 IIVSNKMD----TRIAQRNF-----YEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 IIV NK D + + F E LD+ I+ +SA+ ++ +++ +++ Sbjct: 289 IIVVNKWDLLKKNSTSAKEFEREIRAEFQYLDYAPILFVSAKTGQRLDQIPTLVKEVY 346 >gi|291543008|emb|CBL16118.1| ribosome-associated GTPase EngA [Ruminococcus bromii L2-63] Length = 440 Score = 253 bits (645), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 145/455 (31%), Positives = 237/455 (52%), Gaps = 29/455 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTLFN+L+ +++++V + PG+TRDR+YG+ G IVDT GI Sbjct: 6 IAVVGRPNVGKSTLFNKLIGQRLSIVDDTPGVTRDRIYGEVEWCGKTAFIVDTGGIEPKS 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + I QM Q +LAI+ A++I+ + D K+G+ D + L+K P+++ NK DT Sbjct: 66 DDIILVQMRRQAQLAIDTANVIILVTDCKSGMVATDMDVAQMLQKSGKPVVLCVNKCDTL 125 Query: 125 IAQR-NFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 FYE Y+L + +E+SA H GT +L F F + EN Sbjct: 126 GEPSPEFYEFYNLGLGDPIEVSAVHGYGTGDLLDKAFSSF---------DYDEN------ 170 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 +E ++ N +AV+G+PN GKS+L+N++ R + +G TRD++ Sbjct: 171 -------AEDDDTIIN------VAVIGKPNAGKSSLVNKITNEERCIVSDIAGTTRDTID 217 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 K DTAG+R+ S+I +++E+ ++ ++ ++ + ++++DAT +QD Sbjct: 218 TLVENKYGKFNFTDTAGLRRQSKIYDNIEKYSIIRAKMAIERSDVCVIMIDATEGVTEQD 277 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 ++ G A ++A+NKWD V +Q+ R K + + IS +TG Sbjct: 278 TKVAGLAHEAGRACIIAVNKWDAVEKNDKTMQEFRKKLDADFAFMSYAPKVFISAKTGMR 337 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 +D L ++ N RI T LN L + + PP+ + ++ Y+TQ PP+F Sbjct: 338 IDRLFEYIISCNDSANRRIRTGMLNELLAQATTRVQPPSDKGKRLKIFYMTQASVKPPTF 397 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 + FC SY+RYL NR+R F+L G PI++ Sbjct: 398 VFFCNNAQLFHFSYQRYLENRIREAFALEGTPIKI 432 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 37/131 (28%), Positives = 62/131 (47%), Gaps = 16/131 (12%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRL-------YGQAIINGVIFNI 54 I +A++G PN GKS+L N++ ++ +V + G TRD + YG+ FN Sbjct: 177 IINVAVIGKPNAGKSSLVNKITNEERCIVSDIAGTTRDTIDTLVENKYGK-------FNF 229 Query: 55 VDTAGIADGKNC--SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNI 112 DTAG+ +I K + ++AI + + + +ID+ G+T D + + Sbjct: 230 TDTAGLRRQSKIYDNIEKYSIIRAKMAIERSDVCVIMIDATEGVTEQDTKVAGLAHEAGR 289 Query: 113 PIIIVSNKMDT 123 II NK D Sbjct: 290 ACIIAVNKWDA 300 >gi|227510314|ref|ZP_03940363.1| GTP-binding protein EngA [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227189966|gb|EEI70033.1| GTP-binding protein EngA [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 435 Score = 253 bits (645), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 138/461 (29%), Positives = 243/461 (52%), Gaps = 30/461 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+A +G PNVGKST+FNR+ ++++V + PG+TRDR+Y A F ++DT GI Sbjct: 5 TVAFIGRPNVGKSTIFNRIAGDRISIVEDTPGVTRDRIYTHAEWLANEFAMIDTGGIQI- 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + Q+ +Q E+AI EA +I+F++ +K G+T D + L + + P+++ NK D Sbjct: 64 SDAPFNTQIKNQAEIAIEEADVIVFIVSAKEGLTSDDEQVAKILYRSDKPVVLAVNKADN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 A+ + Y+ Y+L F + + IS H G +L I + F ++ N P Sbjct: 124 PDAREDIYDFYALGFGDPMPISGVHGTGIGDLLDKIVEKFPKETGNVP------------ 171 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 + +R +++GRPNVGKS+L+N +LG NR++ +G TRD++ Sbjct: 172 -----------------NDDIRFSIIGRPNVGKSSLVNAILGENRVIVSDVAGTTRDAID 214 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + N + DTAG+RK ++ E+ E+ +V ++M+++ + + +++A +QD Sbjct: 215 TRFEADNIKFTMVDTAGIRKRGKVYENTERYSVMRAMKAIDQSDVILFVINAEEGIREQD 274 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 ++ G A++ +NKWDM+ + QD T + I +S +T + Sbjct: 275 KKVAGYAHEAGKAIITVVNKWDMLKKTNHTQQDFETLIRNEFQYMAYSPIIFVSAKTKQR 334 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 ++ L + + + R+ +S LN + +P PT+ + R+ Y TQ+ S PP+F Sbjct: 335 IEQLPALIKRVYDNHEKRVQSSALNDVIMDAVAVHPTPTVNGKRLRIYYATQVVSGPPTF 394 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 ++F P+ + SY R+L N++R NF SG PIR+ +S K Sbjct: 395 VVFVNNPDLMHFSYVRFLENQIRDNFDFSGTPIRIIKRSRK 435 >gi|16801117|ref|NP_471385.1| GTP-binding protein EngA [Listeria innocua Clip11262] gi|26006727|sp|Q92A71|DER_LISIN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|16414552|emb|CAC97281.1| lin2051 [Listeria innocua Clip11262] Length = 436 Score = 253 bits (645), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 144/463 (31%), Positives = 251/463 (54%), Gaps = 33/463 (7%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 +AIVG PNVGKST+FNR+V +++++V + PG+TRDR+Y A G FNI+DT GI D Sbjct: 5 VVAIVGRPNVGKSTIFNRIVGERVSIVEDVPGVTRDRIYNSAEWLGKEFNIIDTGGI-DL 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + +Q+ Q E+AI+EA +I+F+ + + G+T D + L + N PI++ NK+D Sbjct: 64 SDEPFLEQIRAQAEIAIDEADVIIFITNGREGVTDADEQVAKILYRSNKPIVLAINKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF-KQKYPNHPLEMIENNKRNE 182 + Y+ YSL F E IS H LG ++ + F K++ +P E + Sbjct: 124 PEMRDQIYDFYSLGFGEPYPISGSHGLGLGDMLDAVRAHFPKEEEEEYPDETV------- 176 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 + +++GRPNVGKS+++N LLG +R++ +G TRD++ Sbjct: 177 ----------------------KFSLIGRPNVGKSSILNALLGEDRVIVSDIAGTTRDAI 214 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 ++ + + DTAGMRK ++ ES E+ +V ++M+++ + +V+++A +Q Sbjct: 215 DTTYTFDGQDYVMIDTAGMRKRGKVYESTEKYSVLRAMRAIERSDVVLVVINAEEGIREQ 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQ-IGDIYINTISGRTG 361 D RI + G A+++ +NKWD ++ + ++ T+ I+ Q + I +S +T Sbjct: 275 DKRIAGYAHDAGRAIIIVVNKWDAINKDEKTI-NVWTEDIREQFQFLSYAPIVFVSAKTK 333 Query: 362 EGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 + L++L + +++ R+ +S LN + NP P + ++ Y TQ+ PP Sbjct: 334 QRLNNLFPLINQVSDNHSLRVQSSMLNDVISDAVAMNPSPMDKGKRLKIFYTTQVAVKPP 393 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 +F++F P + SY+R+L NR+R F G PIR+ + K Sbjct: 394 TFVVFVNDPELMHFSYERFLENRIREAFPFDGTPIRVIARKRK 436 >gi|182418977|ref|ZP_02950233.1| GTP-binding protein EngA [Clostridium butyricum 5521] gi|237668464|ref|ZP_04528448.1| ribosome-associated GTPase EngA [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377260|gb|EDT74828.1| GTP-binding protein EngA [Clostridium butyricum 5521] gi|237656812|gb|EEP54368.1| ribosome-associated GTPase EngA [Clostridium butyricum E4 str. BoNT E BL5262] Length = 438 Score = 253 bits (645), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 142/461 (30%), Positives = 242/461 (52%), Gaps = 28/461 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTLFNRL K++++V + PG+TRDR+Y +A F ++DT GI + Sbjct: 6 VAMVGRPNVGKSTLFNRLAGKRISIVQDTPGVTRDRVYAEAEWLTHTFTMIDTGGIEPER 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N I +QM Q +AI A +I+F++D K G+T DH + + LRK P+++V NK+D+ Sbjct: 66 NDIIVQQMRRQANIAIETADVIVFIVDGKEGLTAADHEVATMLRKSKKPVVLVVNKVDSL 125 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + N +E Y+L + + ISA LG ++ + + F ++ E+ Sbjct: 126 KEEDNAWEFYNLGIGDPITISASQGLGLGDMLDRVVENF-------------DSSIYEQD 172 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 E I RIA++G+PNVGKS+LIN+LLG +R++ +G TRD++ Sbjct: 173 EDEYI---------------RIAMIGKPNVGKSSLINKLLGEDRVIVSEVAGTTRDAIDS 217 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + DTAG+R+ S++ E +E+ +V ++ ++ + I+++DA +QD Sbjct: 218 ELETEEGKFILIDTAGLRRKSKVKEEIERYSVVRTYAAIERSDVCILMIDAQEGITEQDE 277 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 +I+ A+++ +NKWD+V L + + L I IS TG+ Sbjct: 278 KIIGYAHEMRKAIMIIVNKWDLVEKDDKTLDNFKRDLQGKLKFINYAEYLFISALTGQRT 337 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 ++ + + R++T LN + K L PP + + ++ Y TQ+ + PP F+ Sbjct: 338 HKVLQMARKCYDNYNKRVSTGILNDVISKAVLMKEPPVVGLKRMKIYYATQVATRPPKFV 397 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 F SY+RY+ N+LR +F G I++ ++ K Sbjct: 398 FFVNDSEARHFSYERYIENQLRDSFDFKGTGIQIEYRQRKE 438 >gi|94986202|ref|YP_605566.1| GTP-binding protein EngA [Deinococcus geothermalis DSM 11300] gi|166198711|sp|Q1IWI7|DER_DEIGD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|94556483|gb|ABF46397.1| Small GTP-binding protein domain [Deinococcus geothermalis DSM 11300] Length = 441 Score = 253 bits (645), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 134/457 (29%), Positives = 251/457 (54%), Gaps = 37/457 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKS+LFNRLV ++ AVV + PG+TRD G + + +VDT G+ G Sbjct: 4 VAIVGRPNVGKSSLFNRLVGRREAVVADFPGVTRDAKEGLMLYHNHRIVLVDTGGLWSGD 63 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 A + ++ E A+ A ++F++D + G+T D+ + +LR+ P+I+ +NK+D+ Sbjct: 64 EWEQA--IREKAEWAMEGAQAVIFVVDPREGLTAADYEVADWLRRLGKPVIVAANKIDSP 121 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 E++ L F + V ISAEH G +L + M E+ Sbjct: 122 KHDVYLAELWGLGFGDPVAISAEHARGLDDLMERV--------------MAHLPADEEDV 167 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P+ P+RI+++GRPNVGKS+L+N + R + Q G TRDS+ + Sbjct: 168 PE--------------VAPIRISLIGRPNVGKSSLLNAITQSERAIVADQPGTTRDSLDV 213 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 WN+ + DTAG+RK + ++E+ +++S ++ + ++++AT +L Sbjct: 214 EWNYGGQRFVLVDTAGIRK--KPDTAIEEYAIQRSEAAIERSDIIWLVVNAT-EIGDHEL 270 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDK-LNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 ++ + +++G V++ +NKWD+V D+ L + + + ++ +Y + I+ G Sbjct: 271 KLANLAYDSGKPVIVVVNKWDLVPDEALKQTEKELNQKLHHIAYAPRVYTSAINDY---G 327 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 + D++ +++ + W++RI T+ LN WL+ Q++ P + ++ ++TQ++++PP+F Sbjct: 328 IHDMLAEAMKLYEKWQSRIPTAELNRWLEIWQMRQAVPNFHGKPLKMYFMTQVETAPPTF 387 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCF 460 IFC + + +Y+ +L NR+R + L+GIP+R+ + Sbjct: 388 AIFCNRADFVTRAYEGFLQNRIREDLGLAGIPVRLKW 424 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 50/168 (29%), Positives = 77/168 (45%), Gaps = 13/168 (7%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP 264 ++A+VGRPNVGKS+L NRL+G + G+TRD+ + NH I + DT G+ Sbjct: 3 KVAIVGRPNVGKSSLFNRLVGRREAVVADFPGVTRDAKEGLMLYHNHRIVLVDTGGLWS- 61 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 + EQ +K+ ++ + I ++D D + D + G V++A NK Sbjct: 62 ---GDEWEQAIREKAEWAMEGAQAVIFVVDPREGLTAADYEVADWLRRLGKPVIVAANKI 118 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVL 372 D + L + L +G IS GLDDLM V+ Sbjct: 119 DSPKHDVYLAE---------LWGLGFGDPVAISAEHARGLDDLMERVM 157 >gi|94267274|ref|ZP_01290827.1| Small GTP-binding protein domain:GTP-binding [delta proteobacterium MLMS-1] gi|93452066|gb|EAT02754.1| Small GTP-binding protein domain:GTP-binding [delta proteobacterium MLMS-1] Length = 453 Score = 253 bits (645), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 143/459 (31%), Positives = 241/459 (52%), Gaps = 26/459 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKS+LFNR+ + A+V PG+TRDR Y Q N F ++DT GI K Sbjct: 10 VALVGRPNVGKSSLFNRIAGGRKAIVDPTPGVTRDRHYQQVSWNQRHFMLIDTGGIEGDK 69 Query: 65 NCSIA--KQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + + + + +Q+ A+ EA +IL L+D++ G+TP D+ + LR+ P+ + NK+D Sbjct: 70 SSEVPINRLIGEQSRQAVAEADVILLLLDARQGVTPDDYQVVEILRRSGKPVHYLVNKID 129 Query: 123 T-RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 + Y L ++ +SA H LG +EL + Sbjct: 130 APEQVDKLLPTFYELGVPQLWPLSASHGLGLAELLDAVVAELGPA--------------- 174 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 +E + ++ +P+R+A +GRPNVGKS+LINRLLG R++ G TRDS Sbjct: 175 --------PAEPAAEAESQPQPVRVAFIGRPNVGKSSLINRLLGSERMVVSEVPGTTRDS 226 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 V + DTAG+R+ ++ ES+E+ +V +++ ++ C+ ++++DA + Sbjct: 227 VDSLLIRGEKQYRLIDTAGIRRKGKVRESVEKFSVMRALAALERCDLALLVIDAAEGITE 286 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTG 361 QD +++ G A ++ LNKWD++ D + L + + + +G ++ +S +G Sbjct: 287 QDTKVIGYGLERGRACLVLLNKWDLLKDDRRQQKRLLAEVERAVHFVGYAPVHKLSALSG 346 Query: 362 EGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 G+ L+ V ++++ + TTS LN L +PP R +L Y+TQI + PP Sbjct: 347 SGVGRLLPLVDKVSEQYGREFTTSRLNQILTAAVADHPPALHKGRRIKLYYVTQISTRPP 406 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCF 460 + +IF P + SY+R+LINR R L +P+R+ F Sbjct: 407 TLIIFSNDPKNVHFSYQRFLINRFRDALGLDQVPVRIFF 445 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 47/175 (26%), Positives = 85/175 (48%), Gaps = 9/175 (5%) Query: 199 NISKPLR-IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 I +PL +A+VGRPNVGKS+L NR+ G + + G+TRD +W + D Sbjct: 2 TIPQPLPLVALVGRPNVGKSSLFNRIAGGRKAIVDPTPGVTRDRHYQQVSWNQRHFMLID 61 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 T G+ + + ++S Q+V + ++LLDA D ++V+ + +G V Sbjct: 62 TGGIEGDKSSEVPINRLIGEQSRQAVAEADVILLLLDARQGVTPDDYQVVEILRRSGKPV 121 Query: 318 VLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVL 372 +NK D ++++ K + ++G + +S G GL +L+ +V+ Sbjct: 122 HYLVNKID-APEQVD-------KLLPTFYELGVPQLWPLSASHGLGLAELLDAVV 168 >gi|294506233|ref|YP_003570291.1| GTPases [Salinibacter ruber M8] gi|294342561|emb|CBH23339.1| putative GTPases [Salinibacter ruber M8] Length = 505 Score = 253 bits (645), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 144/460 (31%), Positives = 243/460 (52%), Gaps = 33/460 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNRL + A+V + PG+TRDR+YG+A G +VDT G Sbjct: 76 VAIVGRPNVGKSTLFNRLTGSRQAIVEDTPGVTRDRVYGEAEWKGHTIPLVDTGGYVPRS 135 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + + +Q E+A+ +A +ILF++D GIT D I + LR P+++V+NK D Sbjct: 136 DDPYERAIREQAEIALEDADVILFVVDVTTGITEMDKEIATVLRPTETPVMVVANKADNE 195 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + E Y L E+ +S+ + G ++ + + ++ P E E+ Sbjct: 196 EREWDASEFYQLGLGEVYPVSSTNKRGVDDMMAALV----EELPGTEDEADEDR------ 245 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 +++++VG+PN GKS+L+N LG++R + + G TRD+V Sbjct: 246 -------------------VQVSLVGKPNAGKSSLVNATLGFDRAIVTERPGTTRDTVQS 286 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 ++ + + DTAGM+K S+ + +E +S +++R + +++LDAT KQDL Sbjct: 287 VVQYEGRDLMLVDTAGMQKRSK-ADGVEFYATVRSERAIRAGDVCVLVLDATEELHKQDL 345 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKN-LPQIGDIYINTISGRTGEG 363 ++ V +V+A+NKWD+V K + D TK ++ L + + I +S T + Sbjct: 346 SVLSEVNEHKKGMVVAVNKWDLVP-KDDGTMDQYTKYLRQYLGTLDHVPIVYVSAVTKQR 404 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKT-QLQNPPPTIFNRYNRLKYITQIQSSPPS 422 + +L+ LE+ + TR+ TS LN +Q ++PP T + + Y TQ++++PP Sbjct: 405 VYELLDKALEVAEARATRVQTSALNDVVQAALDEKHPPTTSSGAFVNITYATQVRTAPPV 464 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 F+ F P I YKRYL +LR G+P+ + F+ Sbjct: 465 FVFFANHPEGIRTDYKRYLEGKLRDALGFEGVPLTLVFKE 504 >gi|283770547|ref|ZP_06343439.1| GTP-binding protein engA [Staphylococcus aureus subsp. aureus H19] gi|283460694|gb|EFC07784.1| GTP-binding protein engA [Staphylococcus aureus subsp. aureus H19] Length = 436 Score = 253 bits (645), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 141/455 (30%), Positives = 234/455 (51%), Gaps = 29/455 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST+FNR+V +++++V + PG+TRDR+Y FNI+DT GI G Sbjct: 6 VAIVGRPNVGKSTIFNRIVGERVSIVEDTPGVTRDRIYSSGEWLTYDFNIIDTGGIEIG- 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + Q+ Q E+AI+EA +I+F+++ + G+T D + L K P+++ NK+D Sbjct: 65 DAPFQTQIRAQAEIAIDEADVIIFMVNVREGLTQSDEMVAQILYKSKKPVVLAVNKVDNM 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + Y+ YSL F E IS H LG +L + F ++ Sbjct: 125 EMRTDVYDFYSLGFGEPYPISGSHGLGLGDLLDAVVSHFGEE------------------ 166 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 +R++++GRPNVGKS+L+N +LG +R++ + +G TRD++ Sbjct: 167 ----------EEDPYDEDTIRLSIIGRPNVGKSSLVNAILGEDRVIVSNVAGTTRDAIDT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 ++++ + DTAGMRK ++ ES E+ +V ++++++ +V++DA +QD Sbjct: 217 EYSYEGQDYVLIDTAGMRKKGKVYESTEKYSVLRALKAIERSNVVLVVIDAEQGIIEQDK 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 R+ G AVV+ +NKWD V ++ + K + I +S + L Sbjct: 277 RVAGYAHEQGKAVVIVVNKWDTVEKDSKTMKKFEDEVRKEFQFLDYAQIAFVSAKERTRL 336 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 L + E ++ K R+ +S LN + NP PT R + Y TQ+ PP+F+ Sbjct: 337 RTLFPYINEASENHKKRVQSSTLNEVVTDAISMNPTPTDKGRRLNVFYATQVALEPPTFV 396 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 +F + SYKRYL N++R F G PI + Sbjct: 397 VFVNDVELMHFSYKRYLENQIRAAFGFEGTPIHII 431 >gi|238027075|ref|YP_002911306.1| GTP-binding protein EngA [Burkholderia glumae BGR1] gi|237876269|gb|ACR28602.1| GTPase family protein [Burkholderia glumae BGR1] Length = 448 Score = 253 bits (645), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 157/469 (33%), Positives = 243/469 (51%), Gaps = 32/469 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+ + +VDT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRTGARPYLVVDTGGFEPVA 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I +M QT A+ EA +++F++D + G+ P D +I +LRK PI +V NK + Sbjct: 65 KDGILHEMARQTRQAVEEADVVVFIVDGRNGLAPQDKSIADYLRKTGRPIFLVVNKAEGM 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + Y L + ISA H G +++ I + + Y P E +E++ Sbjct: 125 KYTAVAADFYELGLGDPRAISAAHGDGVTDM---INEALEVAYAGQPEE-------SEDA 174 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 + S+ ++IA+VGRPNVGKSTL+N L+G +R++ G TRDS+ + Sbjct: 175 AQ--------------SRGVKIAIVGRPNVGKSTLVNTLIGEDRVIAFDMPGTTRDSIYV 220 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + P + DTAG+R+ ++ E++E+ +V K++QS+ I+LLDA QD Sbjct: 221 DFERNGKPYTLIDTAGLRRRGKVFEAIEKFSVVKTLQSISDANVVILLLDAQQDISDQDA 280 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKA--IKNLPQIGDIYINTISGRTGE 362 I V G A+V+ +NKW D L+ RTKA + L + + IS Sbjct: 281 HIAGFVVEQGRALVVGVNKW----DGLDSHARERTKADLTRKLKFLEFAKFHFISAAEKT 336 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWL-QKTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 G+ L+ SV + ++ T L L + + Q P R +L+Y Q +PP Sbjct: 337 GIGPLLRSVDDAYAAAMKKLPTPKLTRALIEAVEFQQPRRRGPVR-PKLRYAHQGGQNPP 395 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +I + + ++YKRYL NR R F+L+G P+R+ F+S+ NPY K Sbjct: 396 IIVIHGNALDAVTDTYKRYLENRFRETFALTGTPLRIEFRSTTNPYTDK 444 >gi|258515338|ref|YP_003191560.1| GTP-binding protein EngA [Desulfotomaculum acetoxidans DSM 771] gi|257779043|gb|ACV62937.1| small GTP-binding protein [Desulfotomaculum acetoxidans DSM 771] Length = 443 Score = 252 bits (644), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 149/454 (32%), Positives = 246/454 (54%), Gaps = 30/454 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNR+V ++A+V PGITRDRLY +A +G F +VDT GI + Sbjct: 6 VAIVGRPNVGKSTLFNRIVGARVAIVEGQPGITRDRLYQEAEWSGRSFMLVDTGGIDFQE 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N I + Q LAI EA L+LF++D+++G+ D + + LR+ + P+++V+NK++ Sbjct: 66 NDEIVSNVRHQARLAIEEADLVLFVVDARSGLLGSDEEVANILRRTDTPVLLVANKVENF 125 Query: 125 IAQRN--FYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 + N F E YSL E + +SA T +L + + PLE+ +++ Sbjct: 126 SLEDNPQFLEFYSLGLGEPIPVSAAEGKNTGDLLDQVITLL-------PLEI-----KDD 173 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 P ++IAV+GRPNVGKS+L+N +LG R++ + G TRD++ Sbjct: 174 YDP----------------DVIKIAVIGRPNVGKSSLVNSILGQERVIVSNVPGTTRDAI 217 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + + + DTAG+R+ SRI S E+ +V +S++++ + +++LDA Q Sbjct: 218 DTPFERDDKHYVLIDTAGIRRKSRIYISTEKYSVLRSLKAIDRSDVALIVLDAEEGVTDQ 277 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D RI G A ++ +NKWD++ + + K + + I + IS T + Sbjct: 278 DKRIAGYAHEKGKASIIIINKWDLIEKDDHTMSIFTRKIREEMGFITYAPVLFISALTRQ 337 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 + ++ V +++ RI T+ LN+ +++ L N PP + ++ Y TQ PP+ Sbjct: 338 RVHRVLELVDYVSEQHSLRIATANLNTLIREALLHNAPPAPKGKRLKIYYATQKSVKPPT 397 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 +++F P + SY RYL N+LR+ + L G PI Sbjct: 398 YILFVNDPELMHFSYLRYLENQLRLAYGLEGTPI 431 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 67/123 (54%), Gaps = 2/123 (1%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + IA++G PNVGKS+L N ++ ++ +V N PG TRD + + + ++DTAGI Sbjct: 178 VIKIAVIGRPNVGKSSLVNSILGQERVIVSNVPGTTRDAIDTPFERDDKHYVLIDTAGIR 237 Query: 62 DGKNCSIAKQMND--QTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 I+ + ++ AI+ + + L ++D++ G+T D I + +K II+ N Sbjct: 238 RKSRIYISTEKYSVLRSLKAIDRSDVALIVLDAEEGVTDQDKRIAGYAHEKGKASIIIIN 297 Query: 120 KMD 122 K D Sbjct: 298 KWD 300 >gi|83815424|ref|YP_444485.1| Era/ThdF family GTP-binding protein [Salinibacter ruber DSM 13855] gi|83756818|gb|ABC44931.1| GTP-binding protein, Era/ThdF family [Salinibacter ruber DSM 13855] Length = 505 Score = 252 bits (644), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 144/460 (31%), Positives = 244/460 (53%), Gaps = 33/460 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNRL + A+V + PG+TRDR+YG+A G +VDT G Sbjct: 76 VAIVGRPNVGKSTLFNRLTGSRQAIVEDTPGVTRDRVYGEAEWKGHTIPLVDTGGYVPRS 135 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + + +Q E+A+ +A +ILF++D GIT D I + LR P+++V+NK D Sbjct: 136 DDPYERAIREQAEIALEDADVILFVVDVTTGITEMDKEIATVLRPTETPVMVVANKADNE 195 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + E Y L E+ +S+ + G ++ + + + E +E+ Sbjct: 196 EREWDASEFYQLGLGEVYPVSSTNKRGVDDMMAALVE--------------ELPGTEDEA 241 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 K+ + ++++VG+PN GKS+L+N LG++R + + G TRD+V Sbjct: 242 DKDRV---------------QVSLVGKPNAGKSSLVNATLGFDRAIVTERPGTTRDTVQS 286 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 ++ + + DTAGM+K S+ + +E +S +++R + +++LDAT KQDL Sbjct: 287 VVQYEGRDLMLVDTAGMQKRSK-ADGVEFYATVRSERAIRAGDVCVLVLDATEELHKQDL 345 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKN-LPQIGDIYINTISGRTGEG 363 ++ V +V+A+NKWD+V K + D TK ++ L + + I +S T + Sbjct: 346 SVLSEVNEHKKGMVVAVNKWDLVP-KDDGTMDQYTKYLRQYLGTLDHVPIVYVSAVTKQR 404 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKT-QLQNPPPTIFNRYNRLKYITQIQSSPPS 422 + +L+ LE+ + TR+ TS LN +Q ++PP T + + Y TQ++++PP Sbjct: 405 VYELLDKALEVAEARATRVQTSALNDVVQAALDEKHPPTTSSGAFVNITYATQVRTAPPV 464 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 F+ F P I YKRYL +LR G+P+ + F+ Sbjct: 465 FVFFANHPEGIRTDYKRYLEGKLRDALGFEGVPLTLVFKE 504 >gi|150390617|ref|YP_001320666.1| small GTP-binding protein [Alkaliphilus metalliredigens QYMF] gi|166920095|sp|A6TS39|DER_ALKMQ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|149950479|gb|ABR49007.1| small GTP-binding protein [Alkaliphilus metalliredigens QYMF] Length = 440 Score = 252 bits (644), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 141/458 (30%), Positives = 241/458 (52%), Gaps = 28/458 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFN+++ ++++V + PG+TRDR+Y + F ++DT GI Sbjct: 6 VAIVGRPNVGKSTLFNKIIGHRISIVEDQPGVTRDRIYAEVEWLDHYFTLIDTGGIDADT 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I QM +Q +LAI A + +F++D +AG+T D + LRK + P+++ NK+DT Sbjct: 66 EEIIPAQMREQAQLAIETADVTVFMVDGRAGLTTSDREVAEMLRKSHKPVLLAMNKVDTS 125 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 +FYE Y L + +EIS+ LG +L I K F Sbjct: 126 NRLDSFYEFYELGIGDPIEISSAQGLGIGDLLDEIVKHF--------------------- 164 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 E K + + +++A++G+PNVGKS+++N +LG NR++ +G TRD++ Sbjct: 165 ------PENKGVIYD-DDVIKVAIIGKPNVGKSSIVNSILGENRVIVSDIAGTTRDAIDT 217 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 +N + DTAG+R+ S+I E++E+ +V +S+ +V + ++++DAT +QD Sbjct: 218 PFNDGEDQYVLIDTAGLRRKSKIKENIEKYSVIRSIAAVERADVCLLVIDATEGVTEQDT 277 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 ++ G ++ +NKWD++ N + + L + I IS T + + Sbjct: 278 KVAGFSHENGKGTIIVVNKWDLIEKDNNTMNKFIKEIRTELAYLSYAPILFISALTRQRM 337 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 ++ +V I+ R+ T LN + + L N PP+ + ++ Y TQ PP+F+ Sbjct: 338 PKVLETVKFISNQRAMRVPTGGLNEVIGEATLLNQPPSDKGKRLKIFYGTQGSIKPPTFV 397 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 +F + SY+RY+ NR+R NF G PIR ++ Sbjct: 398 LFINDKKLMHFSYERYIENRIRENFGFEGTPIRFIYRE 435 >gi|240047358|ref|YP_002960746.1| GTP-binding protein EngA [Mycoplasma conjunctivae HRC/581] gi|239984930|emb|CAT04923.1| GTP-binding protein EngA [Mycoplasma conjunctivae] Length = 435 Score = 252 bits (644), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 145/463 (31%), Positives = 254/463 (54%), Gaps = 35/463 (7%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M T+A++G PNVGKSTLFN+++ KK ++ + PG+TRDR+Y + G FNI+DT GI Sbjct: 1 MKNTVALIGKPNVGKSTLFNKIIGKKKSITDSMPGVTRDRIYAKTTWLGKTFNIIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + +N + + Q+++AI EA +I+ ++D + I D+ + LRK N +++V+NK Sbjct: 61 -EIENRTFQDLIQMQSKVAIEEAQVIVLVLDGQNAIDSDDYYVVDLLRKSNKKVLVVANK 119 Query: 121 MDTRIAQRNF-YEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNK 179 ++ R ++F IYSL F+ I ISA H G +L L+ I N Sbjct: 120 LEGR---KSFDTSIYSLGFEHIFPISAIHGEGVGDL----------------LDEIIANM 160 Query: 180 RNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITR 239 + +N+ ++A++G+PN GKSTL+N+L+ R +T + G TR Sbjct: 161 SFSDKSDDNL--------------FKLAIIGKPNAGKSTLLNKLVKSERSITSNIPGTTR 206 Query: 240 DSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPF 299 DSVS W NH +EI DTAG+ + S++ ES++ + ++ S+ + ++V++DA+ P Sbjct: 207 DSVSSKWVVNNHELEIVDTAGIIRKSKVVESVDFYALLRAFNSLDEADLSLVIVDASQPL 266 Query: 300 EKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGR 359 D R+ F ++L +NKWD++ + N + K N I I +S + Sbjct: 267 SHFDSRLSGYAFEKNKPIILVINKWDLIEKETNTQHEFVKKIKNNYKFIDWAPIVFLSAK 326 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 TGE + L +++++ + K RI+T+ LN ++ + Q+ PP + + + + Q++ + Sbjct: 327 TGEKIHKLAETIIKVKENLKKRISTNVLNRFILEIQIMQPPRSHKGKRLHISFAQQVEGA 386 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 P+F+ + I SY+RY+ N+LR F G PI++ +++ Sbjct: 387 IPTFVFNVNDKDTIHFSYQRYIENQLRKYFGFEGCPIKIVYKN 429 >gi|260881015|ref|ZP_05403389.2| ribosome-associated GTPase EngA [Mitsuokella multacida DSM 20544] gi|260850181|gb|EEX70188.1| ribosome-associated GTPase EngA [Mitsuokella multacida DSM 20544] Length = 445 Score = 252 bits (644), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 149/465 (32%), Positives = 242/465 (52%), Gaps = 37/465 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFN++ KK++++V + PG+TRDR+Y A F ++DT GI + Sbjct: 8 VAIVGRPNVGKSTLFNQIGKKRVSIVDDMPGVTRDRIYLDAEWLNQHFTMIDTGGIEFDE 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + I K M Q +LA++EA +ILFL+D ++G+T D + LR P+I+ NK+D+ Sbjct: 68 SNHILKSMRQQAQLAMDEADVILFLVDGRSGLTTADEEVARLLRSTKKPVILAVNKIDSP 127 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + YE Y+L + + ISA + + +L I F + Sbjct: 128 QRAMDVYEFYNLGLGDPIPISASNAMNLGDLLDAIVAAFPK------------------- 168 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 K + IAV+GRPNVGKS+++N +LG R++ G TRD++ Sbjct: 169 ---------KEEEVKDEDEISIAVIGRPNVGKSSIVNAILGEERVIVSDVPGTTRDAIDT 219 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + DTAGMR+ +I E +E+ +V +S++++ + +++++A +QD Sbjct: 220 HFTKDGTKFTLIDTAGMRRRGKIDEPVERYSVMRSLRAIDRADVVLMMINAFEGITEQDK 279 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDK-----LNLLQDLRTKAIKNLPQIGDIYINTISGR 359 +I +G VV+ +NKWD+ DK L +LR K + L +Y + ++G+ Sbjct: 280 KIAGYAHESGKGVVIVVNKWDIYPDKDDKSTLRFTDELRDK-LGFLQYAPVLYTSALTGQ 338 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 + DL+ V E + RI TS LN ++ NPPP R ++ ++TQ Sbjct: 339 RVARVTDLVRYVAEQQAM---RIKTSVLNELIRDAVSVNPPPMHRGRQLKILFMTQTDIC 395 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 PP F+IF P + SY R++ NRLR F G P+R+ ++ K Sbjct: 396 PPKFIIFVNDPELMHFSYLRFIENRLREQFGFEGTPLRLIVRARK 440 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 40/121 (33%), Positives = 69/121 (57%), Gaps = 2/121 (1%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI-AD 62 +IA++G PNVGKS++ N ++ ++ +V + PG TRD + +G F ++DTAG+ Sbjct: 180 SIAVIGRPNVGKSSIVNAILGEERVIVSDVPGTTRDAIDTHFTKDGTKFTLIDTAGMRRR 239 Query: 63 GKNCSIAKQMNDQTEL-AINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 GK ++ + L AI+ A ++L +I++ GIT D I + + ++IV NK Sbjct: 240 GKIDEPVERYSVMRSLRAIDRADVVLMMINAFEGITEQDKKIAGYAHESGKGVVIVVNKW 299 Query: 122 D 122 D Sbjct: 300 D 300 >gi|238852698|ref|ZP_04643108.1| ribosome-associated GTPase EngA [Lactobacillus gasseri 202-4] gi|282852069|ref|ZP_06261427.1| ribosome-associated GTPase EngA [Lactobacillus gasseri 224-1] gi|238834844|gb|EEQ27071.1| ribosome-associated GTPase EngA [Lactobacillus gasseri 202-4] gi|282556829|gb|EFB62433.1| ribosome-associated GTPase EngA [Lactobacillus gasseri 224-1] Length = 435 Score = 252 bits (644), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 141/460 (30%), Positives = 238/460 (51%), Gaps = 30/460 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKST+FNR++ ++A+V + G+TRDR+Y +A G F ++DT GI Sbjct: 6 VALVGRPNVGKSTIFNRIINSRVAIVEDKAGVTRDRIYARAEWMGHEFILIDTGGIT-LD 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + I +Q+ Q E+AI+EA +I+ L D +T D I L + PII+ NK D Sbjct: 65 SGEIEEQIKAQAEIAIDEADVIVMLGDVTQHMTNMDETIAKMLYRTKKPIILAVNKADNP 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + Y+ YSL + + +S H G +L I F K H + I Sbjct: 125 EQRTDIYDFYSLGLGDPIPVSGSHGTGMGDLLDAIVGEFGDKANQHEDDSI--------- 175 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 R +V+GRPNVGKS+L+N +LG R++ + G TRD++ Sbjct: 176 --------------------RFSVIGRPNVGKSSLVNAILGEQRVIVSNIEGTTRDAIDT 215 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 ++ I DTAG+R+ ++ E E+ +V +++ ++ + T+++LDA+ +QD Sbjct: 216 TFTNDGQKYTIVDTAGIRRRGKVYEKTEKYSVLRAISAIEESDITLLVLDASTGIREQDK 275 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 + + G V++ +NKWD+ ++D + + I +S +TG+ + Sbjct: 276 HVAGYAHDAGRGVIIVVNKWDLPKKDSTSMKDFEDTIRQEFQYLDYAPIVFVSAKTGQRV 335 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 D++ V E++ RI +S LN L + P P + + R+ Y+TQ+ +PP+F+ Sbjct: 336 PDILKLVKEVHDNQTRRIKSSVLNDLLLEATRITPTPLVNGKRLRIYYMTQVAVTPPTFV 395 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 +F P + SY+R+LIN+LR NF G PI++ + K Sbjct: 396 VFVNDPELLHFSYQRFLINQLRQNFDFVGTPIKILARKRK 435 >gi|313623121|gb|EFR93388.1| ribosome-associated GTPase EngA [Listeria innocua FSL J1-023] Length = 436 Score = 252 bits (644), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 143/463 (30%), Positives = 251/463 (54%), Gaps = 33/463 (7%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 +AIVG PNVGKST+FNR+V +++++V + PG+TRDR+Y A G FNI+DT GI D Sbjct: 5 VVAIVGRPNVGKSTIFNRIVGERVSIVEDVPGVTRDRIYNSAEWLGKEFNIIDTGGI-DL 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + +Q+ Q E+AI+EA +I+F+ + + G+T D + L + N PI++ NK+D Sbjct: 64 SDEPFLEQIRAQAEIAIDEADVIIFITNGREGVTDADEQVAKILYRSNKPIVLAINKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF-KQKYPNHPLEMIENNKRNE 182 + Y+ YSL F E IS H LG ++ + F K++ +P E + Sbjct: 124 PEMRDQIYDFYSLGFGEPYPISGSHGLGLGDMLDAVRAHFPKEEEEEYPDETV------- 176 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 + +++GRPNVGKS+++N LLG +R++ +G TRD++ Sbjct: 177 ----------------------KFSLIGRPNVGKSSILNALLGEDRVIVSDIAGTTRDAI 214 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 ++ + + DTAGMRK ++ ES E+ +V ++M+++ + +V+++A +Q Sbjct: 215 DTTYTFDGQDYVMIDTAGMRKRGKVYESTEKYSVLRAMRAIERSDVVLVVINAEEGIREQ 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQ-IGDIYINTISGRTG 361 D RI + G A+++ +NKWD ++ + ++ T+ I+ Q + I +S +T Sbjct: 275 DKRIAGYAHDAGRAIIIVVNKWDAINKDEKTI-NVWTEDIREQFQFLSYAPIVFVSAKTK 333 Query: 362 EGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 + L++L + +++ R+ +S LN + NP P + ++ Y TQ+ PP Sbjct: 334 QRLNNLFPLINQVSDNHSLRVQSSMLNDVISDAVAMNPSPMDKGKRLKIFYTTQVAVKPP 393 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 +F++F P + SY+R+L NR+R F G P+R+ + K Sbjct: 394 TFVVFVNDPELMHFSYERFLENRIREAFPFDGTPVRVIARKRK 436 >gi|313157956|gb|EFR57362.1| ribosome biogenesis GTPase Der [Alistipes sp. HGB5] Length = 434 Score = 252 bits (644), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 152/457 (33%), Positives = 237/457 (51%), Gaps = 28/457 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNRLV ++ A+V G TRDR YG+ NG F+++DT G Sbjct: 4 VAIVGRPNVGKSTLFNRLVGQRKAIVDATAGTTRDRHYGKTDWNGKEFSVIDTGGYTVNS 63 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 ++ Q LAI+EA +ILFL++ GIT D + LR+ + +I+V NK+D Sbjct: 64 EDIFEDEIRRQVLLAIDEADVILFLVEVATGITDLDQLMADILRRTSKKVILVCNKVDNN 123 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + +E Y+L + IS+ GT +L I P E + + +E+ Sbjct: 124 DQIYSSHEFYALGLGDPFCISSMSGSGTGDLMDAILAAL-------PAETVP--EEDEDL 174 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P I +VGRPNVGKS++ N LLG R + S +G TRDS+ Sbjct: 175 P-------------------HITIVGRPNVGKSSMTNALLGEERNIVTSIAGTTRDSIHT 215 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 +N + DTAGMRK + E LE +V +S++++ + I++LDA E QDL Sbjct: 216 RYNKFGMDFYLVDTAGMRKKGKAMEDLEFYSVMRSIRAIENSDVCILMLDAQQGLESQDL 275 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 I + + V+ +NKWD++ N +++ K L DI I S + + + Sbjct: 276 NIHNLIVRNRKGCVIVVNKWDLIEKDNNTMKEWTEFLKKKLAPFNDIPIIFTSVLSKQRI 335 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 D++ + + + + K RI+TS LN +L PPP +Y ++KY+TQ+ + P F Sbjct: 336 FDVLQTAIRVYQSRKRRISTSELNDFLLPLIENYPPPATKGKYIKIKYVTQLPTPTPQFA 395 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 F P I E Y+R+L N +R ++ +G+P+++ F+ Sbjct: 396 FFVNLPQYIKEPYRRFLENNIRDHWDFAGVPMQIYFR 432 >gi|220929546|ref|YP_002506455.1| GTP-binding protein EngA [Clostridium cellulolyticum H10] gi|254783147|sp|B8I442|DER_CLOCE RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|219999874|gb|ACL76475.1| small GTP-binding protein [Clostridium cellulolyticum H10] Length = 441 Score = 252 bits (644), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 146/456 (32%), Positives = 239/456 (52%), Gaps = 31/456 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKST FN L ++++V + PG+TRDR+Y + F ++DT GI Sbjct: 6 VAVVGRPNVGKSTFFNYLAGSRISIVEDTPGVTRDRIYTEIEWRNTKFTLIDTGGIEPYS 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I +QM Q E+AI A +I+F++D+K G+T D + + LRK P+++ NK+D R Sbjct: 66 EDIIMQQMKRQAEIAIETADVIIFMVDAKDGMTATDKEVATMLRKSQKPVVLCVNKVD-R 124 Query: 125 IAQ--RNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 + + YE Y+L E+ IS+ H LG +L +F+ F Sbjct: 125 VGDPPPDVYEFYNLGMGEMQIISSVHGLGIGDLLDEVFEHF------------------- 165 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 E+I SE + V +++AVVG+PN GKS+LIN +LG NR++ + G TRD++ Sbjct: 166 ---PEDIASEEEEDV------IKVAVVGKPNAGKSSLINSILGENRVIVSNIPGTTRDAI 216 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 DTAG+R+ S+I+E++E+ + +S +V + ++++DA +Q Sbjct: 217 DTHVEKDGQKYTFIDTAGIRRRSKISENIEKYSTIRSWTAVERADVCLIMIDAEDGVTEQ 276 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D +I G A ++ +NKWD++ + L++ R + L + + IS +TG+ Sbjct: 277 DTKIAGYAHQQGKASIIVINKWDLIEKQTGTLEEYRKVVHEKLGFMTYAPVLFISAKTGQ 336 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 + + + + RI+T LN + + PP+ + ++ Y+TQI PPS Sbjct: 337 RVIKIYELIKFVADQAAFRISTGMLNDLVSEAVAMVQPPSDKGKRLKIYYMTQIGVKPPS 396 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 F++F SY+RYL N+LR NF G PIR Sbjct: 397 FVVFVNDVELFHYSYERYLENQLRKNFGFEGTPIRF 432 >gi|320140353|gb|EFW32209.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp. aureus MRSA131] Length = 436 Score = 252 bits (644), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 141/455 (30%), Positives = 234/455 (51%), Gaps = 29/455 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST+FNR+V +++++V + PG+TRDR+Y FNI+DT GI G Sbjct: 6 VAIVGRPNVGKSTIFNRIVGERVSIVEDTPGVTRDRIYSSGEWLTHDFNIIDTGGIEIG- 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + Q+ Q E+AI+EA++I+F+++ + G+T D + L K P+++ NK+D Sbjct: 65 DAPFQTQIRAQAEIAIDEAYVIIFMVNVREGLTQSDEMVAQILYKSKKPVVLAVNKVDNM 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + Y+ YSL F E IS H LG +L + F ++ Sbjct: 125 EMRTDVYDFYSLGFGEPYPISGSHGLGLGDLLDAVVSHFGEE------------------ 166 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 +R++++GRPNVGKS+L+N +LG +R++ + +G TRD++ Sbjct: 167 ----------EEDPYDEDTIRLSIIGRPNVGKSSLVNAILGEDRVIVSNVAGTTRDAIDT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 +++ + DTAGMRK ++ ES E+ +V ++++++ +V++DA +QD Sbjct: 217 EYSYDGQDYVLIDTAGMRKKGKVYESTEKYSVLRALKAIERSNVVLVVIDAEQGIIEQDK 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 R+ G AVV+ +NKWD V ++ + K + I +S + L Sbjct: 277 RVAGYAHEQGKAVVIVVNKWDTVEKDSKTMKKFEDEVRKEFQFLDYAQIAFVSAKERTRL 336 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 L + E ++ K R+ +S LN + NP PT R + Y TQ+ PP+F+ Sbjct: 337 RTLFPYINEASENHKKRVQSSTLNEVVTDAISMNPTPTDKGRRLNVFYATQVAIEPPTFV 396 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 +F + SYKRYL N++R F G PI + Sbjct: 397 VFVNDVELMHFSYKRYLENQIRAAFGFEGTPIHII 431 >gi|257068697|ref|YP_003154952.1| cytidylate kinase [Brachybacterium faecium DSM 4810] gi|256559515|gb|ACU85362.1| cytidylate kinase [Brachybacterium faecium DSM 4810] Length = 755 Score = 252 bits (644), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 143/452 (31%), Positives = 244/452 (53%), Gaps = 32/452 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR++ +A G F +VDT G D + Sbjct: 324 VAVVGRPNVGKSTLVNRILGRREAVVEDRPGVTRDRVFYEAEWTGKDFWLVDTGGWED-R 382 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 IA ++ +Q E+A++ A ++LF++D+ G+T D + LRK N+PI++V+NK+D + Sbjct: 383 VQGIAYRVAEQAEVAVSLADVVLFIVDANVGVTTTDEQLLKVLRKANVPIVLVANKVDDQ 442 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + +++L E +SA H G+ +L + + Sbjct: 443 RGELEAAALWNLGLGEPHAVSALHGRGSGDLLDAVVAAMPE------------------- 483 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 EG+ + + P R+A+VGRPNVGKS+L+NRL G R++ +G TRD V Sbjct: 484 -------EGRGAAAD-HGPRRVALVGRPNVGKSSLLNRLAGEQRVVVDDIAGTTRDPVDE 535 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + DTAG+R+ ++ + ++ ++ E +VLL+A+ P QDL Sbjct: 536 KISLGGKDWTFVDTAGIRRRVLQSQGADYYASLRTRAALDRAEVAVVLLEASEPLSTQDL 595 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 +I+D V +G A+VLA NKWD++ ++ + L + ++L + IS TG Sbjct: 596 KIIDMVLESGRALVLAFNKWDLIDEERR--RALEYEIERDLGHVAWAPRVNISAETGRHA 653 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 + L+ ++ + W RI T LN++L + +P P + +R+ + TQ ++ PP F+ Sbjct: 654 EKLVPAIETALESWDRRIPTGRLNAFLGQLVAAHPHPLRGGKQSRILFATQARTRPPRFV 713 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 IF + + Y+R++ RLR +F+ +G PI Sbjct: 714 IFAS--GFLEHGYRRFIERRLREDFAFTGSPI 743 >gi|167765447|ref|ZP_02437560.1| hypothetical protein BACSTE_03837 [Bacteroides stercoris ATCC 43183] gi|167697075|gb|EDS13654.1| hypothetical protein BACSTE_03837 [Bacteroides stercoris ATCC 43183] Length = 437 Score = 252 bits (643), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 157/454 (34%), Positives = 240/454 (52%), Gaps = 30/454 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNRL K + A+V G TRDR YG++ G F++VDT G Sbjct: 5 VAIVGRPNVGKSTLFNRLTKTRQAIVNEEAGTTRDRQYGKSEWLGREFSVVDTGGWVVNS 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +++ Q +A++EA +ILF++D G+T D + S LR+ P+++V+NK D Sbjct: 65 DDIFEEEIRKQVLMAVDEADVILFVVDVMNGVTDLDLQVASILRRTKKPVLLVANKTDNN 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 Q N E YSL + ISA GT +L +I + FK K ++E Sbjct: 125 ELQYNAPEFYSLGLGDPYCISAVTGSGTGDLMDLIVENFK--------------KESDEI 170 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 E+I R AVVGRPN GKS+++N +G +R + +G TRDS+ Sbjct: 171 LDEDIP--------------RFAVVGRPNAGKSSIVNAFIGEDRNIVTEIAGTTRDSIYT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 +N + DTAG+RK +++ E LE +V +S++S+ + I++LDAT E QDL Sbjct: 217 RYNKFGFDFYLVDTAGIRKKNKVNEDLEYYSVIRSIRSIENSDVCILMLDATRGIESQDL 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKN-LPQIGDIYINTISGRTGEG 363 I + +V+ +NKWD+V DK + AI+N D I S T + Sbjct: 277 NIFSLIQKNSKGLVVVVNKWDLVEDKTVKVMKTFENAIRNRFAPFVDFPIIFASALTKQR 336 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP-PS 422 + ++ + + RI T+ LN + PPP I +Y ++KYITQ+ ++ PS Sbjct: 337 ILKVLEEARTVYENRMIRIPTARLNEEMLPLIEAYPPPAIKGKYIKIKYITQLPNTQIPS 396 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 F+ F P + E Y+R+L N++R ++L+G PI Sbjct: 397 FVYFANLPQYVKEPYRRFLENKMREKWNLTGTPI 430 >gi|167569736|ref|ZP_02362610.1| GTP-binding protein EngA [Burkholderia oklahomensis C6786] Length = 445 Score = 252 bits (643), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 154/467 (32%), Positives = 240/467 (51%), Gaps = 28/467 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+ + + +VDT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGARPYLVVDTGGFEPVA 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I +M QT A+ EA +++F++D + G+ P D +I +LRK PI +V NK + Sbjct: 65 KDGILHEMARQTRQAVEEADVVVFIVDGRNGLAPQDKSIADYLRKTGRPIFLVVNKAEGM 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + Y L + ISA H G +++ I + + Y P E Sbjct: 125 KYTAVASDFYELGLGDPRAISAAHGDGVTDM---INEALEVAYAGQP-----------EE 170 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 +E+ + G ++IA+VGRPNVGKSTL+N L+G +R++ G TRDS+ + Sbjct: 171 SEEDAAARG----------IKIAIVGRPNVGKSTLVNTLIGEDRVIAFDMPGTTRDSIYV 220 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + DTAG+R+ ++ E++E+ +V K++QS+ I+LLDA QD Sbjct: 221 DFERNGKRYTLIDTAGLRRRGKVFEAIEKFSVVKTLQSISDANVVILLLDARQDISDQDA 280 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 I V G A+V+ +NKWD + ++ + + + L + + IS G+ Sbjct: 281 HIAGFVVEQGRALVVGVNKWDGLDP--HVRERAKADLARKLKFLDFAKSHFISAAEKTGI 338 Query: 365 DDLMVSVLEINKLWKTRITTSYLN-SWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 LM SV + ++ T L + + + Q P R +L+Y Q +PP Sbjct: 339 GPLMRSVDDAYAAAMKKLPTPKLTRALIDAVEFQQPRRRGPVR-PKLRYAHQGGQNPPII 397 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +I + + E+YKRYL NR R FSL+G P+R+ F+SS NPY K Sbjct: 398 VIHGNALDAVTETYKRYLENRFRETFSLTGTPLRIEFRSSTNPYADK 444 >gi|332300532|ref|YP_004442453.1| GTP-binding protein engA [Porphyromonas asaccharolytica DSM 20707] gi|332177595|gb|AEE13285.1| GTP-binding protein engA [Porphyromonas asaccharolytica DSM 20707] Length = 436 Score = 252 bits (643), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 152/459 (33%), Positives = 236/459 (51%), Gaps = 29/459 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNRL + + A+V G TRDR YG F+IVDT G Sbjct: 5 VAIVGRPNVGKSTLFNRLTRSRQAIVTEEAGTTRDRQYGHVTWCERTFSIVDTGGWVLRS 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +++N Q +A+ EA LILF++D G+T D I LR+ N P+I+V+NK D Sbjct: 65 DDVFEEEINKQVRIAVEEADLILFVVDILNGVTDLDDEIALMLRQTNKPVILVANKADNF 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + E Y+L + ISA + T +L I ++ ++ + PL E Sbjct: 125 TQHNDAAEFYTLGIGDPYPISAINGSSTGDLLDHILELLPKEGNHEPL---------LEL 175 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P R A+VGRPN GKS+L+N L+G R + +SG TRDS+ Sbjct: 176 P-------------------RFAIVGRPNAGKSSLLNALIGEERNIVTDRSGTTRDSIFA 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 ++ N + DTAG+RK ++ E LE +V ++++++ + I+L+DAT E QD Sbjct: 217 EYDKFNQHFYLVDTAGIRKKGKVNEDLEYYSVIRAIRAIENADVCIMLIDATRGIEAQDA 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIK-NLPQIGDIYINTISGRTGEG 363 I + +V+ +NKWD+V DK +Q +AI+ D I IS + Sbjct: 277 NIFRVIQRNNKGLVVCVNKWDLVEDKSMPVQRTMEEAIRARFAPFTDFPIIFISALNKQR 336 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 + ++ + + + TRI T LN L + PPP+I +Y ++K++ Q+ ++ PSF Sbjct: 337 ILKVIETAQHVYDMRSTRIPTHQLNQVLLPLIEKTPPPSIKGKYIKIKFVQQLPTAVPSF 396 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 + P + E YKR+L N++R N+ G PI + + Sbjct: 397 AFYANLPQWVREPYKRFLENQIRKNWDFCGTPINIFLRE 435 >gi|310827223|ref|YP_003959580.1| hypothetical protein ELI_1631 [Eubacterium limosum KIST612] gi|308738957|gb|ADO36617.1| hypothetical protein ELI_1631 [Eubacterium limosum KIST612] Length = 439 Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 143/454 (31%), Positives = 239/454 (52%), Gaps = 27/454 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTLFN+LV +++A+V + PG+TRDR+ A F ++DT GI Sbjct: 6 VAVVGRPNVGKSTLFNKLVGERIAIVEDTPGVTRDRIIADAEWQNHHFTLIDTGGIEPHT 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I QM Q ELAI+ A LI+ L+D + G+T D + + +RK + +++ NK+D++ Sbjct: 66 KDDILLQMRVQAELAIDMADLIVLLVDGREGMTASDLEVANMIRKHSKNVLLAVNKVDSQ 125 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + N +E Y+L E + ISAE LG + + + K+ Y +E Sbjct: 126 QLENNIFEFYNLGIGEPIAISAEQGLGLGDFLDEVIERVKKVY--------------DED 171 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 +E+ L+IAV+G+PN GKSTLIN+++G++RL+ G TRD++ Sbjct: 172 AQED-------------DNLKIAVIGKPNAGKSTLINKMVGHDRLIVSDVPGTTRDAIDT 218 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + DTAG+RK +I E +E+ ++ +++ +V + +VL+D +QD Sbjct: 219 EVRFNGRDYTLIDTAGLRKKKKIYEDIERYSIVRAIAAVDRSDVVLVLIDGEKGVTEQDA 278 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 +I N ++ +NKWD+V + ++ + L I I IS +TG+ + Sbjct: 279 KIAGIAHNRSKPSIIIVNKWDIVEKDTKTMDKMKREIRDTLSFIDYAPILFISAKTGQRV 338 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 + ++ + + RITT LN + + + PPT R ++ Y +Q +PP+F+ Sbjct: 339 SKIYETIDFVKSQTEKRITTGKLNEAMTEFIMMKQPPTKSGRRLKIFYASQTGVNPPTFV 398 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 +F + SY+RYL N++R F G PIR Sbjct: 399 VFVNDATLMHFSYQRYLENKIRDTFDFDGTPIRF 432 >gi|300361577|ref|ZP_07057754.1| ribosome-associated GTPase EngA [Lactobacillus gasseri JV-V03] gi|300354196|gb|EFJ70067.1| ribosome-associated GTPase EngA [Lactobacillus gasseri JV-V03] Length = 435 Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 141/460 (30%), Positives = 238/460 (51%), Gaps = 30/460 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKST+FNR++ ++A+V + G+TRDR+Y +A G F ++DT GI Sbjct: 6 VALVGRPNVGKSTIFNRIINSRVAIVEDKAGVTRDRIYARAEWMGHEFILIDTGGIT-LD 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + I +Q+ Q E+AI+EA +I+ L D +T D I L + PII+ NK D Sbjct: 65 SGEIEEQIKAQAEIAIDEADVIVMLGDVTQHMTNMDETIAKMLYRTKKPIILAVNKADNP 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + Y+ YSL + + +S H G +L I F K H + I Sbjct: 125 EQRTDIYDFYSLGLGDPIPVSGSHGTGMGDLLDAIVGEFGNKANQHEDDSI--------- 175 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 R +V+GRPNVGKS+L+N +LG R++ + G TRD++ Sbjct: 176 --------------------RFSVIGRPNVGKSSLVNAILGEQRVIVSNIEGTTRDAIDT 215 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 ++ I DTAG+R+ ++ E E+ +V +++ ++ + T+++LDA+ +QD Sbjct: 216 TFTNDGQKYTIVDTAGIRRRGKVYEKTEKYSVLRAISAIEESDITLLVLDASTGIREQDK 275 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 + + G V++ +NKWD+ ++D + + I +S +TG+ + Sbjct: 276 HVAGYAHDAGRGVIIVVNKWDLPKKDSTSMKDFENTIRQEFQYLDYAPIVFVSAKTGQRV 335 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 D++ V E++ RI +S LN L + P P + + R+ Y+TQ+ +PP+F+ Sbjct: 336 PDILKLVKEVHDNQTRRIKSSVLNDLLLEATRITPTPLVNGKRLRIYYMTQVAVTPPTFV 395 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 +F P + SY+R+LIN+LR NF G PI++ + K Sbjct: 396 VFVNDPELLHFSYQRFLINQLRQNFDFVGTPIKILARKRK 435 >gi|261417942|ref|YP_003251624.1| GTP-binding protein EngA [Geobacillus sp. Y412MC61] gi|297529610|ref|YP_003670885.1| ribosome-associated GTPase EngA [Geobacillus sp. C56-T3] gi|319767246|ref|YP_004132747.1| ribosome-associated GTPase EngA [Geobacillus sp. Y412MC52] gi|261374399|gb|ACX77142.1| ribosome-associated GTPase EngA [Geobacillus sp. Y412MC61] gi|297252862|gb|ADI26308.1| ribosome-associated GTPase EngA [Geobacillus sp. C56-T3] gi|317112112|gb|ADU94604.1| ribosome-associated GTPase EngA [Geobacillus sp. Y412MC52] Length = 436 Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 145/461 (31%), Positives = 242/461 (52%), Gaps = 29/461 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 +AIVG PNVGKST+FNR+V +++++V + PG+TRDR+Y +A F ++DT GI G Sbjct: 5 VVAIVGRPNVGKSTIFNRIVGERISIVEDVPGVTRDRIYSRAEWLNHSFYLIDTGGIDIG 64 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + Q+ Q E+AI+EA +I+F+ + + G+T D + LR+ N P+++ NK+D Sbjct: 65 DEPLLV-QIRQQAEIAIDEADVIIFMTNGRDGVTAADEEVAKLLRRSNKPVVLAVNKIDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + Y+ Y+L F E IS H G +L + + F Sbjct: 124 PEMRDLIYDFYALGFGEPYPISGAHGTGLGDLLDAVVRHF-------------------- 163 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 PK G+ +++ ++ ++GRPNVGKS+L+N +LG R++ +G TRD+V Sbjct: 164 -PK----GGGQEYEEDV---IKFCLIGRPNVGKSSLVNAILGEERVIVSDIAGTTRDAVD 215 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 S+ + I DTAGMRK +I ES E+ +V ++++++ + +V+L+A +QD Sbjct: 216 TSFVREGQEYVIIDTAGMRKRGKIYESTEKYSVLRALRAIERSDVVLVVLNAEEGIIEQD 275 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 +I G V+L +NKWD + + + K + P + I +S +T + Sbjct: 276 KKIAGYAHEAGRGVILVVNKWDAIEKDDKTMVEFERKIRDHFPFLDYAPILFVSAKTKQR 335 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 L L+ V ++ R+ T+ LN + NP PT R ++ Y+TQ+ PP+F Sbjct: 336 LHKLLPLVRLVSDNHAMRVQTNVLNEVIMDAVAMNPTPTHNGRRLKVYYMTQVAVKPPTF 395 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 + F P + SY+R+L NR+R F G PI++ + K Sbjct: 396 VAFVNDPELMHFSYERFLENRIRDAFGFEGTPIKIIARPRK 436 >gi|295676899|ref|YP_003605423.1| ribosome-associated GTPase EngA [Burkholderia sp. CCGE1002] gi|295436742|gb|ADG15912.1| ribosome-associated GTPase EngA [Burkholderia sp. CCGE1002] Length = 445 Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 158/469 (33%), Positives = 240/469 (51%), Gaps = 32/469 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+ + +VDT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRTGERPYLVVDTGGFEPVA 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I +M QT A+ E+ +++F++D + G+ P D +I +LRK PI +V NK + Sbjct: 65 KDGILHEMARQTRQAVEESDVVVFIVDGRNGLAPQDKSIADYLRKVGRPIFLVVNKAEGM 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + Y L + ISA H G +++ I + + Y P E E+ + Sbjct: 125 KYTNVAADFYELGLGDPRAISAAHGDGVTDM---INEALEVAYAGQPEESEEDKE----- 176 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 ++ ++IA+VGRPNVGKSTLIN L+G R++ G TRDS+ + Sbjct: 177 ----------------ARGVKIAIVGRPNVGKSTLINALVGEERVIAFDMPGTTRDSIYV 220 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + P + DTAG+R+ ++ E++E+ +V K++QS+ I+LLDA QD Sbjct: 221 DFERNGKPYTLIDTAGLRRRGKVFEAIEKFSVVKTLQSISDANVVILLLDARQDISDQDA 280 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAI--KNLPQIGDIYINTISGRTGE 362 I V G A+V+ +NKWD + + RTKA + L + + IS Sbjct: 281 HIAGFVVEQGRALVVGVNKWDGLDPHVR----ERTKADLERKLKFLDFAKFHFISAAEKT 336 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWL-QKTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 G+ LM SV + +++ T L L + + Q P R +L+Y Q +PP Sbjct: 337 GIGPLMRSVDDAYTAAMSKLPTPKLTRALIEAVEFQQPRRRGPVR-PKLRYAHQGGQNPP 395 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +I + I ++YKRYL NR R F L+G P+R+ F+SS NPY K Sbjct: 396 IIVIHGNALDAITDTYKRYLENRFRETFKLTGTPLRIEFRSSTNPYADK 444 >gi|329667448|gb|AEB93396.1| putative GTP-binding protein EngA [Lactobacillus johnsonii DPC 6026] Length = 435 Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 140/460 (30%), Positives = 239/460 (51%), Gaps = 30/460 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKST+FNR++ ++A+V + G+TRDR+Y +A G F ++DT GI Sbjct: 6 VALVGRPNVGKSTIFNRIINSRVAIVEDKAGVTRDRIYARAEWMGHEFILIDTGGIT-LD 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + I +Q+ Q E+AI+EA +I+ L D +T D I L + P+I+ NK D Sbjct: 65 SGEIEEQIKAQAEIAIDEADVIVMLGDVTQHMTNMDETIAKMLYRTKKPVILAINKADNP 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + Y+ YSL + + +S H G +L I F K H + I Sbjct: 125 EQRTDIYDFYSLGLGDPIPVSGSHGTGMGDLLDAIVGEFGDKANQHEDDSI--------- 175 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 R +V+GRPNVGKS+L+N +LG R++ + G TRD++ Sbjct: 176 --------------------RFSVIGRPNVGKSSLVNAILGEQRVIVSNIEGTTRDAIDT 215 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 ++ I DTAG+R+ ++ E E+ +V +++ ++ + T+++LDA+ +QD Sbjct: 216 TFTNDGQKYTIVDTAGIRRRGKVYEKTEKYSVLRAISAIEESDITLLVLDASTGIREQDK 275 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 + + G V++ +NKWD+ ++D + + I +S +TG+ + Sbjct: 276 HVAGYAHDAGRGVIIVVNKWDLPKKDSRSMKDFEDTIRREFQYLDYAPIIFVSAKTGQRV 335 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 D++ V E+++ RI +S LN L + P P + + R+ Y+TQ+ +PP+F+ Sbjct: 336 PDILKLVKEVHENQTRRIQSSVLNDLLLEATRITPTPLVNGKRLRIYYMTQVAVTPPTFV 395 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 +F P + SY+R+LIN+LR NF G PI++ + K Sbjct: 396 VFVNDPELLHFSYQRFLINQLRQNFDFVGTPIKILARKRK 435 >gi|87161650|ref|YP_494061.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|161509642|ref|YP_001575301.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|294848438|ref|ZP_06789184.1| ribosome-associated GTPase EngA [Staphylococcus aureus A9754] gi|123485886|sp|Q2FGW7|DER_STAA3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|189037166|sp|A8Z454|DER_STAAT RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|87127624|gb|ABD22138.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|160368451|gb|ABX29422.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|294824464|gb|EFG40887.1| ribosome-associated GTPase EngA [Staphylococcus aureus A9754] gi|315197778|gb|EFU28112.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus CGS01] gi|320142720|gb|EFW34523.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp. aureus MRSA177] Length = 436 Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 141/455 (30%), Positives = 234/455 (51%), Gaps = 29/455 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST+FNR+V +++++V + PG+TRDR+Y FNI+DT GI G Sbjct: 6 VAIVGRPNVGKSTIFNRIVGERVSIVEDTPGVTRDRIYSSGEWLTHDFNIIDTGGIEIG- 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + Q+ Q E+AI+EA++I+F+++ + G+T D + L K P+++ NK+D Sbjct: 65 DAPFQTQIRAQAEIAIDEAYVIIFMVNVREGLTQSDEMVAQILYKSKKPVVLAVNKVDNM 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + Y+ YSL F E IS H LG +L + F ++ Sbjct: 125 EMRTDVYDFYSLGFGEPYPISGSHGLGLGDLLDAVVSHFGEE------------------ 166 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 +R++++GRPNVGKS+L+N +LG +R++ + +G TRD++ Sbjct: 167 ----------EEDPYDEDTIRLSIIGRPNVGKSSLVNAILGEDRVIVSNVAGTTRDAIDT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 +++ + DTAGMRK ++ ES E+ +V ++++++ +V++DA +QD Sbjct: 217 EYSYDGQDYVLIDTAGMRKKGKVYESTEKYSVLRALKAIERSNVVLVVIDAEQGIIEQDK 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 R+ G AVV+ +NKWD V ++ + K + I +S + L Sbjct: 277 RVAGYAHEQGKAVVIVVNKWDTVEKDSKTMKKFEDEVRKEFQFLDYAQIAFVSAKERTRL 336 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 L + E ++ K R+ +S LN + NP PT R + Y TQ+ PP+F+ Sbjct: 337 RTLFPYINEASENHKKRVQSSTLNEVVTGAISMNPTPTDKGRRLNVFYATQVAIEPPTFV 396 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 +F + SYKRYL N++R F G PI + Sbjct: 397 VFVNDVELMHFSYKRYLENQIRAAFGFEGTPIHII 431 >gi|331703406|ref|YP_004400093.1| GTP binding protein EngA [Mycoplasma mycoides subsp. capri LC str. 95010] gi|328801961|emb|CBW54115.1| GTP binding protein EngA, probably truncated inC terminal [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 435 Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 155/467 (33%), Positives = 256/467 (54%), Gaps = 42/467 (8%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 +AIVG PNVGKS+LFNR++K+K ++V + PG+TRDR+Y A F ++DT GI+ Sbjct: 5 VVAIVGKPNVGKSSLFNRIIKEKKSIVDDKPGVTRDRIYSSAEWLTREFILIDTGGISLS 64 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + ++ QT++AI +A +I+F++D + D I L K P+I+ NK D Sbjct: 65 DQL-FSNEIKLQTQIAIEQADVIIFVVDFLNNLDNDDKMIAKILHKSKKPVILAVNKYDK 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + Y+ SL F ++ IS+ H +G +L ++I +NEE Sbjct: 124 KTIDDHNYQFMSLGFSDLYFISSTHGIGIGDLLD---------------KVISYISKNEE 168 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 K++ T +IA++GRPNVGKS+L+N L+ NR++ G T D+V Sbjct: 169 IIKDDST--------------KIAIIGRPNVGKSSLVNSLVNENRMIVSEIEGTTLDAVD 214 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 IS+++ + DTAG+RK S++ +++E+ + +S+ ++ + ++++DAT P QD Sbjct: 215 ISFSYNKKKYTVIDTAGIRKKSKLGQTIEKYSYLRSLSAISDADIVLLMIDATKPITDQD 274 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDK----LNLLQDLRTKAIKNLPQIGDIYINTISGR 359 I +++ V++ +NKWD++ +K L +++R K + I+I+ + Sbjct: 275 TNIGGLIYDEKKPVIIVVNKWDLIKNKETEILKKEEEIRA-YFKYISYAKIIFISALDKT 333 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLK--YITQIQ 417 + DL V EI + +I T LN L K QL NP P FN NRLK Y +Q+Q Sbjct: 334 RITKILDL---VDEIKQNLDIKIKTYVLNEVLNKAQLINPAPE-FNG-NRLKIYYASQVQ 388 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 + P+F++FC PN + SYKR+L N++R +F L IPI + F+ K Sbjct: 389 AYIPTFVLFCNNPNYLHFSYKRFLENQIRFSFGLDSIPINLIFREKK 435 >gi|304440203|ref|ZP_07400093.1| ribosome-associated GTPase EngA [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371252|gb|EFM24868.1| ribosome-associated GTPase EngA [Peptoniphilus duerdenii ATCC BAA-1640] Length = 442 Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 148/458 (32%), Positives = 247/458 (53%), Gaps = 29/458 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 ++I+G PNVGKSTLFN++V +K+++ + PG+TRDR+Y A G F +VDT G+ Sbjct: 10 VSIIGKPNVGKSTLFNKIVGRKISITEDTPGVTRDRIYSDASWQGRKFLLVDTGGLDLKD 69 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + Q +LA+ + +I+F++D G++P D I +LR+ N II+ NK D++ Sbjct: 70 EDIFMSSIKGQADLALETSDVIIFVLDGIHGLSPTDVDIAKYLRRSNKKIILCINKYDSK 129 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 A+ N+Y+ + L V ISAE G +L ++ F+ I+ + +E+ Sbjct: 130 SAKDNYYDFFELGLGIPVLISAEQGTGVGDLLDIVTSEFE----------IDTSDEYDET 179 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 +R+ ++G+PNVGKS+LIN +LG R + G TRDS+ Sbjct: 180 -------------------VRVTLIGKPNVGKSSLINFILGEERSIVTDIPGTTRDSIDS 220 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + +K+ + + DTAG+RK +I E++E+ +V +++ ++ I+L+DA +QD Sbjct: 221 HFIYKDTELTLVDTAGLRKKKKINEAVERYSVIRTLTAIERSNVCILLIDAEEGVSEQDS 280 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 +IV + A+V+A+NKWD V+ + ++ + LP I I IS TG+ + Sbjct: 281 KIVGYAHDNNKAIVVAVNKWDAVTKDNDSIKKYEKSIRERLPFINYAPIIFISALTGQRV 340 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 D L+ +VL N + RI TS LN L K L N PP+ + RL + Q+ + PP FL Sbjct: 341 DKLLDTVLIANNNYNHRIKTSVLNEILNKAVLMNQPPSDKGKRGRLYFGQQVATRPPRFL 400 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 + SY RY+ N++R ++S G PI++ ++ Sbjct: 401 LSVNDKELFHFSYIRYIENQIRESYSFIGTPIKIDLKN 438 >gi|329962635|ref|ZP_08300583.1| ribosome biogenesis GTPase Der [Bacteroides fluxus YIT 12057] gi|328529666|gb|EGF56564.1| ribosome biogenesis GTPase Der [Bacteroides fluxus YIT 12057] Length = 437 Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 155/454 (34%), Positives = 239/454 (52%), Gaps = 30/454 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNRL K + A+V G TRDR YG+ G F++VDT G Sbjct: 5 VAIVGRPNVGKSTLFNRLTKSRQAIVNEEAGTTRDRQYGKTEWLGREFSVVDTGGWVVNS 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +++ Q +A++EA +ILF++D G+T D + + LR+ P+++++NK D Sbjct: 65 DDIFEEEIRKQVLMAVDEADVILFVVDVMNGVTDLDLQVAAILRRAKKPVLLIANKTDNN 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 Q N E Y L + ISA GT ++ +I FK K +EE Sbjct: 125 ELQYNAPEFYKLGLGDPYCISAVTGSGTGDMMDLIVGSFK--------------KESEEI 170 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 E+I R AVVGRPN GKS+++N +G +R + +G TRDS+ Sbjct: 171 LDEDIP--------------RFAVVGRPNAGKSSIVNAFIGEDRNIVTEIAGTTRDSIYT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 +N + DTAG+RK ++++E LE +V +S++S+ + I++LDAT E QDL Sbjct: 217 RYNKFGFDFYLVDTAGIRKKNKVSEDLEYYSVIRSIRSIENSDVCILMLDATRGIESQDL 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKN-LPQIGDIYINTISGRTGEG 363 I + +V+ +NKWD+V DK + AI+N D I S T + Sbjct: 277 NIFSLIQKNSKGLVVVVNKWDLVQDKTVKVMKTFEDAIRNRFAPFVDFPIIFASALTKQR 336 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP-PS 422 + ++ + + TRI T+ LN + PPP I +Y ++KYITQ+ ++ PS Sbjct: 337 ILKVLEEARSVYENRMTRIPTARLNEEMLPLIEAYPPPAIKGKYIKIKYITQLPNTQVPS 396 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 F+ F P + E Y+R+L N++R ++L+G PI Sbjct: 397 FVYFANLPQYVKEPYRRFLENKMREKWNLTGTPI 430 >gi|116618390|ref|YP_818761.1| GTPase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|122271410|sp|Q03WN4|DER_LEUMM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|116097237|gb|ABJ62388.1| Predicted GTPase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 436 Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 142/461 (30%), Positives = 240/461 (52%), Gaps = 31/461 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST+FNR+ +++A+V + PG+TRDRLY A F ++DT GI G Sbjct: 6 VAIVGRPNVGKSTIFNRMAGERIAIVEDMPGVTRDRLYAPAEWLNYEFRMIDTGGIEIGD 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +A ++ Q ELAINEA +I+ ++ + G+T D + L K + P+++ NK+D Sbjct: 66 APFLA-EIRGQVELAINEADVIVMVVSGREGLTEADEVVARMLYKSDKPVVLAVNKVDNP 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + Y+ Y+L + +S H LG +L I K F Sbjct: 125 EMRHDVYDFYALGLGDPFPVSGSHGLGLGDLLDEIVKHF--------------------- 163 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P E E + +R +++GRPNVGKS+++N +LG R++ G TRD++ Sbjct: 164 PDEAAEQEDDA--------IRFSIIGRPNVGKSSIVNAMLGEKRVIVSDIEGTTRDAIDT 215 Query: 245 SW-NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + + + DTAGMRK +I E+ E+ +V ++M+++ ++++DA +QD Sbjct: 216 RFVTEEGDEFVMVDTAGMRKRGKIYENTEKYSVMRAMKAIDDSNVILMVIDAEAGIREQD 275 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 + G A+++ +NKWD + + D + + I +S +TG+ Sbjct: 276 KHVAGFAHEAGRAMIIVVNKWDAIEKNDRTMSDFENLIREEFKFLDYAPIVFVSAKTGQR 335 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 LD L V +++ + RIT+S LN + NP P+ R R+ Y TQ+ + PP+F Sbjct: 336 LDRLPQMVKDVDDNHRKRITSSTLNDVIMDAIAINPTPSDNGRRLRVYYATQVATQPPTF 395 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 +IF + SY+R+L N++R +F +G PI++ ++ K Sbjct: 396 VIFVNDVELMHFSYERFLENKIRESFDFTGTPIKLIVRARK 436 >gi|325912018|ref|ZP_08174420.1| ribosome biogenesis GTPase Der [Lactobacillus iners UPII 143-D] gi|325476203|gb|EGC79367.1| ribosome biogenesis GTPase Der [Lactobacillus iners UPII 143-D] Length = 435 Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 153/461 (33%), Positives = 243/461 (52%), Gaps = 32/461 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKST+FNR++ ++A+V + PG+TRDR+Y A G F +VDT GI Sbjct: 6 VALVGRPNVGKSTIFNRIINSRVAIVEDQPGVTRDRIYANAQWMGKQFVLVDTGGITFED 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N I +Q+ Q E+AINEA +I+ L D +T D I L K PII+ NK D Sbjct: 66 NV-IEEQIKTQAEIAINEADVIVLLSDVTGHVTNLDETIAKILYKAKKPIILAINKADNP 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + Y+ YSL + + +S H G +L I F N N Sbjct: 125 EQRNDIYDFYSLGLGDPIPVSGSHGTGLGDLLDAIVSKF--------------NGNNTTD 170 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 NI R +++GRPNVGKS+++N +LG NR++ G TRD++ Sbjct: 171 DDNNI---------------RFSIIGRPNVGKSSIVNSILGENRVIVADMEGTTRDAIDT 215 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + I DTAG+R+ ++ E +E+ +V +S+ ++ + I+++DA++ +QD Sbjct: 216 IFEKDGQKYTIVDTAGIRRKGKVYEKVEKYSVMRSISAIEQSDVAIIVIDASVGIIEQDK 275 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIY-INTISGRTGEG 363 I + G V++A+NKWD+ S +QD K I+ Q D I +S +TG+ Sbjct: 276 HIAGYAHDAGKGVIIAVNKWDVPSKTTTSMQDF-VKVIRQEFQYLDYAPIVFVSAKTGQR 334 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 ++D++ V + + + RI +S LN L P P + + R+ Y+TQ+ PP+F Sbjct: 335 IEDIVSLVKNVKENQQRRIQSSVLNDLLLDATRITPTPLVNGKRLRIYYMTQVAVVPPTF 394 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 ++F P + SYKR+LIN++R NF+ G PI++ + K Sbjct: 395 VVFVNDPELLHFSYKRFLINQMRQNFNFEGTPIKILARKRK 435 >gi|94311040|ref|YP_584250.1| GTP-binding protein EngA [Cupriavidus metallidurans CH34] gi|123383733|sp|Q1LLJ5|DER_RALME RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|93354892|gb|ABF08981.1| GTP-binding protein [Cupriavidus metallidurans CH34] Length = 447 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 150/466 (32%), Positives = 241/466 (51%), Gaps = 31/466 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTLFNR+ + + A+V + PG+TRDR YG+ I F ++DT G Sbjct: 5 IALVGRPNVGKSTLFNRMTRSRDALVADLPGLTRDRHYGEGRIGDRPFIVIDTGGFEPVA 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I +M QT A+ EA +++FL+D + G+ P D I +LRK +++ NK + Sbjct: 65 KEGIVAEMAKQTRQAVVEADVVIFLVDGRLGLAPQDRVIADYLRKTGRRVMLAINKAEGM 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + Y L + IS+ H G EL + Q+ P E + Sbjct: 125 KYTSVAADFYELGMGDPYAISSTHGDGVRELVDEALDLAVQERP-------------ELA 171 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 +E+ G ++IA+VGRPNVGKSTL+N L+G R++ G TRD++ + Sbjct: 172 DQEDAGQHG----------VKIAIVGRPNVGKSTLVNTLIGEERVIAFDMPGTTRDAIYV 221 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + P + DTAG+RK ++ E++E+ +V K++QS+ ++LLDA +QD Sbjct: 222 EFERGGKPYTLIDTAGLRKRGKVFEAIEKFSVVKTLQSIADANVVVLLLDAQQDISEQDA 281 Query: 305 RIVDSVFNTGHAVVLALNKWDMVS--DKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 I + +G A+V+ +NKWD + + + DL K L + I+ +S R Sbjct: 282 HIAGFIVESGRALVVGVNKWDGLDGHQRDRVKHDLERK----LQFLSFANIHFVSARERT 337 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKT-QLQNPPPTIFNRYNRLKYITQIQSSPP 421 G+ L+ SV + ++ T + LQ+ + Q P +R +L+Y Q S+PP Sbjct: 338 GIGALLRSVDDAYAAAMIKLPTPQITRVLQEAVEFQQPKRVGVSR-PKLRYAHQGGSNPP 396 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 ++ + + ++Y+RYL NR R F L G P+R+ F+++KNPY Sbjct: 397 IIVVHGNALSGVTDAYRRYLENRFRTAFKLKGTPLRIEFRTNKNPY 442 >gi|300704410|ref|YP_003746013.1| GTPase [Ralstonia solanacearum CFBP2957] gi|299072074|emb|CBJ43406.1| GTPase involved in ribosome synthesis and maintenance [Ralstonia solanacearum CFBP2957] Length = 447 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 152/472 (32%), Positives = 241/472 (51%), Gaps = 39/472 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+ + F +DT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRSRDALVADMPGLTRDRHYGEGRVGERPFIAIDTGGFEPVA 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I +M QT A+ EA +++F++D + G+ P D I +LRK I++ NK + Sbjct: 65 KEGIVAEMAKQTRQAVVEADVVIFIVDGRLGLAPQDRVIADYLRKTGRRILLAVNKAEGM 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + Y L + IS+ H G +L + + Q + P E+ + + ++ Sbjct: 125 KYTAVATDFYELGLGDPRAISSAHGDGVRDL---VDEALDQAFSERP-ELADAAQAHDHG 180 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 RIA+VGRPNVGKSTL+N L+G R++ G TRD++ + Sbjct: 181 -------------------TRIAIVGRPNVGKSTLVNALIGEERVIAFDMPGTTRDAIYV 221 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + P + DTAG+RK ++ E++E+ +V K++QS+ ++LLDA QD Sbjct: 222 DFERNGKPYTLIDTAGLRKRGKVFEAIEKFSVVKTLQSIADANVVVLLLDAQQDISDQDA 281 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSD------KLNLLQDLRTKAIKNLPQIGDIYINTISG 358 I + +G A+V+ +NKWD + K +L + L+ A N ++ IS Sbjct: 282 HIAGFIVESGRALVIGVNKWDGLDGHARDRIKHDLERKLQFLAFAN--------VHYISA 333 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKT-QLQNPPPTIFNRYNRLKYITQIQ 417 + G+ LM SV + ++ T L LQ+ + Q P +R +L+Y Q Sbjct: 334 KQRTGIGALMKSVDDAYAAAMVKLPTPKLTRVLQEAVEFQQPRRAGISR-PKLRYAHQGG 392 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIK 469 S+PP +I + IPE+Y+R+L R R F L G P+R+ F+++KNPY + Sbjct: 393 SNPPIVVIHGNALSNIPETYRRFLEGRFRDAFQLKGTPLRIEFRTNKNPYAQ 444 >gi|42519017|ref|NP_964947.1| GTP-binding protein EngA [Lactobacillus johnsonii NCC 533] gi|227889871|ref|ZP_04007676.1| GTP-binding protein EngA [Lactobacillus johnsonii ATCC 33200] gi|268319593|ref|YP_003293249.1| GTP-binding protein engA [Lactobacillus johnsonii FI9785] gi|81832245|sp|Q74JL6|DER_LACJO RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|41583304|gb|AAS08913.1| probable GTP-binding protein EngA [Lactobacillus johnsonii NCC 533] gi|227849735|gb|EEJ59821.1| GTP-binding protein EngA [Lactobacillus johnsonii ATCC 33200] gi|262397968|emb|CAX66982.1| GTP-binding protein engA [Lactobacillus johnsonii FI9785] Length = 435 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 139/460 (30%), Positives = 238/460 (51%), Gaps = 30/460 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKST+FNR++ ++A+V + G+TRDR+Y +A G F ++DT GI Sbjct: 6 VALVGRPNVGKSTIFNRIINSRVAIVEDKAGVTRDRIYARAEWMGHEFILIDTGGIT-LD 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + I +Q+ Q E+AI+EA +I+ L D +T D I L + P+I+ NK D Sbjct: 65 SGEIEEQIKAQAEIAIDEADVIVMLGDVTQHMTNMDETIAKMLYRTKKPVILAINKADNP 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + Y+ YSL + + +S H G +L I F K H Sbjct: 125 EQRTDIYDFYSLGLGDPIPVSGSHGTGMGDLLDAIVGEFGDKANQHE------------- 171 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 +R +V+GRPNVGKS+L+N +LG R++ + G TRD++ Sbjct: 172 ----------------DGSIRFSVIGRPNVGKSSLVNAILGEQRVIVSNIEGTTRDAIDT 215 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 ++ I DTAG+R+ ++ E E+ +V +++ ++ + T+++LDA+ +QD Sbjct: 216 TFTNDGQKYTIVDTAGIRRRGKVYEKTEKYSVLRAISAIEESDITLLVLDASTGIREQDK 275 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 + + G V++ +NKWD+ ++D + + I +S +TG+ + Sbjct: 276 HVAGYAHDAGRGVIIVVNKWDLPKKDSRSMKDFEDTIRREFQYLDYAPIIFVSAKTGQRV 335 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 D++ V E+++ RI +S LN L + P P + + R+ Y+TQ+ +PP+F+ Sbjct: 336 PDILKLVKEVHENQTRRIQSSVLNDLLLEATRITPTPLVNGKRLRIYYMTQVAVTPPTFV 395 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 +F P + SY+R+LIN+LR NF G PI++ + K Sbjct: 396 VFVNDPELLHFSYQRFLINQLRQNFDFVGTPIKILARKRK 435 >gi|282916742|ref|ZP_06324500.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp. aureus D139] gi|282319229|gb|EFB49581.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp. aureus D139] Length = 436 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 141/455 (30%), Positives = 234/455 (51%), Gaps = 29/455 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST+FNR+V +++++V + PG+TRDR+Y FNI+DT GI G Sbjct: 6 VAIVGRPNVGKSTIFNRIVGERVSIVEDTPGVTRDRIYSSGEWLTHDFNIIDTGGIEIG- 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + Q+ Q E+AI+EA +I+F+++ + G+T D + L K P+++ NK+D Sbjct: 65 DAPFQTQIRAQAEIAIDEADVIIFMVNVREGLTQSDEMVAQILYKSKKPVVLAVNKVDNM 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + Y+ YSL F E IS H LG +L + F ++ Sbjct: 125 EMRTDVYDFYSLGFGEPYPISGSHGLGLGDLLDAVVSHFGEE------------------ 166 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 +R++++GRPNVGKS+L+N +LG +R++ + +G TRD++ Sbjct: 167 ----------EEDPYDEDTIRLSIIGRPNVGKSSLVNAILGEDRVIVSNVAGTTRDAIDT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 ++++ + DTAGMRK ++ ES E+ +V ++++++ +V++DA +QD Sbjct: 217 EYSYEGQDYVLIDTAGMRKKGKVYESTEKYSVLRALKAIERSNVVLVVIDAEQGIIEQDK 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 R+ G AVV+ +NKWD V ++ + K + I +S + L Sbjct: 277 RVAGYAHEQGKAVVIVVNKWDTVEKDSKTMKKFEDEVRKEFQFLDYAQIAFVSAKERTRL 336 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 L + E ++ K R+ +S LN + NP PT R + Y TQ+ PP+F+ Sbjct: 337 RTLFPYINEASENHKKRVQSSTLNEVVTDAISMNPTPTDKGRRLNVFYATQVAIEPPTFV 396 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 +F + SYKRYL N++R F G PI + Sbjct: 397 VFVNDVELMHFSYKRYLENQIRAAFGFEGTPIHII 431 >gi|302191345|ref|ZP_07267599.1| GTP-binding protein EngA [Lactobacillus iners AB-1] gi|309804160|ref|ZP_07698238.1| ribosome biogenesis GTPase Der [Lactobacillus iners LactinV 11V1-d] gi|312872309|ref|ZP_07732379.1| ribosome biogenesis GTPase Der [Lactobacillus iners LEAF 2062A-h1] gi|312873983|ref|ZP_07734019.1| ribosome biogenesis GTPase Der [Lactobacillus iners LEAF 2052A-d] gi|325912827|ref|ZP_08175205.1| ribosome biogenesis GTPase Der [Lactobacillus iners UPII 60-B] gi|329921288|ref|ZP_08277726.1| ribosome biogenesis GTPase Der [Lactobacillus iners SPIN 1401G] gi|308163743|gb|EFO66012.1| ribosome biogenesis GTPase Der [Lactobacillus iners LactinV 11V1-d] gi|311090532|gb|EFQ48940.1| ribosome biogenesis GTPase Der [Lactobacillus iners LEAF 2052A-d] gi|311092132|gb|EFQ50506.1| ribosome biogenesis GTPase Der [Lactobacillus iners LEAF 2062A-h1] gi|325477820|gb|EGC80954.1| ribosome biogenesis GTPase Der [Lactobacillus iners UPII 60-B] gi|328934580|gb|EGG31084.1| ribosome biogenesis GTPase Der [Lactobacillus iners SPIN 1401G] Length = 435 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 153/461 (33%), Positives = 243/461 (52%), Gaps = 32/461 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKST+FNR++ ++A+V + PG+TRDR+Y A G F +VDT GI Sbjct: 6 VALVGRPNVGKSTIFNRIINSRVAIVEDQPGVTRDRIYANAQWMGKQFVLVDTGGITFED 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N I +Q+ Q E+AINEA +I+ L D +T D I L K PII+ NK D Sbjct: 66 NV-IEEQIKTQAEIAINEADVIVMLSDVTGHVTNLDETIAKILYKAKKPIILAINKADNP 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + Y+ YSL + + +S H G +L I F N N Sbjct: 125 EQRNDIYDFYSLGLGDPIPVSGSHGTGLGDLLDAIVSKF--------------NGNNTTD 170 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 NI R +++GRPNVGKS+++N +LG NR++ G TRD++ Sbjct: 171 DDNNI---------------RFSIIGRPNVGKSSIVNSILGENRVIVADMEGTTRDAIDT 215 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + I DTAG+R+ ++ E +E+ +V +S+ ++ + I+++DA++ +QD Sbjct: 216 IFEKDGQKYTIVDTAGIRRKGKVYEKVEKYSVMRSISAIEQSDVAIIVIDASVGIIEQDK 275 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIY-INTISGRTGEG 363 I + G V++A+NKWD+ S +QD K I+ Q D I +S +TG+ Sbjct: 276 HIAGYAHDAGKGVIIAVNKWDVPSKTTTSMQDF-VKVIRQEFQYLDYAPIVFVSAKTGQR 334 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 ++D++ V + + + RI +S LN L P P + + R+ Y+TQ+ PP+F Sbjct: 335 IEDIVSLVKNVKENQQRRIQSSVLNDLLLDATRITPTPLVNGKRLRIYYMTQVAVVPPTF 394 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 ++F P + SYKR+LIN++R NF+ G PI++ + K Sbjct: 395 VVFVNDPELLHFSYKRFLINQMRQNFNFEGTPIKILARKRK 435 >gi|56420756|ref|YP_148074.1| GTP-binding protein EngA [Geobacillus kaustophilus HTA426] gi|81819681|sp|Q5KXT0|DER_GEOKA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|56380598|dbj|BAD76506.1| GTP-binding protein [Geobacillus kaustophilus HTA426] Length = 436 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 145/461 (31%), Positives = 242/461 (52%), Gaps = 29/461 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 +AIVG PNVGKST+FNR+V +++++V + PG+TRDR+Y +A F ++DT GI G Sbjct: 5 VVAIVGRPNVGKSTIFNRIVGERISIVEDVPGVTRDRIYSRAEWLNHSFYLIDTGGIDIG 64 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + Q+ Q E+AI+EA +I+F+ + + G+T D + LR+ N P+++ NK+D Sbjct: 65 DEPLLV-QIRQQAEIAIDEADVIIFMTNGRDGVTAADEEVAKLLRRSNKPVVLAVNKIDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + Y+ Y+L F E IS H G +L + + F Sbjct: 124 PEMRDLIYDFYALGFGEPYPISGAHGTGLGDLLDAVVRHF-------------------- 163 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 PK G+ +++ ++ ++GRPNVGKS+L+N +LG R++ +G TRD+V Sbjct: 164 -PK----GGGQEYEEDV---IKFCLIGRPNVGKSSLVNAILGEERVIVSDIAGTTRDAVD 215 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 S+ + I DTAGMRK +I ES E+ +V ++++++ + +V+L+A +QD Sbjct: 216 TSFVREGQEYVIIDTAGMRKRGKIYESTEKYSVLRALRAIERSDVVLVVLNAEEGIIEQD 275 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 +I G V+L +NKWD + + + K + P + I +S +T + Sbjct: 276 KKIAGYAHEAGRGVILIVNKWDAIEKDDKTMVEFERKIRDHFPFLDYAPILFVSAKTKQR 335 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 L L+ V ++ R+ T+ LN + NP PT R ++ Y+TQ+ PP+F Sbjct: 336 LHKLLPLVRLVSDNHAMRVQTNVLNEVIMDAVAMNPTPTHNGRRLKVYYMTQVAVKPPTF 395 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 + F P + SY+R+L NR+R F G PI++ + K Sbjct: 396 VAFVNDPELMHFSYERFLENRIRDAFGFEGTPIKIIARPRK 436 >gi|168334058|ref|ZP_02692274.1| small GTP-binding protein [Epulopiscium sp. 'N.t. morphotype B'] Length = 455 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 142/459 (30%), Positives = 236/459 (51%), Gaps = 29/459 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTLFNRL K K++++ + PG+TRDR+Y A F +VDT GI Sbjct: 19 VAVVGRPNVGKSTLFNRLAKAKISIIDDTPGVTRDRIYADAEWLNKKFTLVDTGGIEPDS 78 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N I QM Q E+AI+ A +I+FL+D K G+ D + + +RK P+++V NK+D Sbjct: 79 NDVILSQMRKQAEVAIDTADVIIFLVDVKTGVVDSDMHVANMVRKSQKPVVLVVNKVDDM 138 Query: 125 IA-QRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 YE YSL E + +SA L ++ + F Sbjct: 139 AKYHMGIYEFYSLGLGEPIPVSASQPLNLGDMLDEVCAHF-------------------- 178 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 P+E + E + ++K +A+VG+PNVGKS+L+N++LG +R++ +G TR+SV Sbjct: 179 -PEEYVEIEDEDAIK-------VAIVGKPNVGKSSLVNKILGEDRVIVSDIAGTTRESVD 230 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + DTAG+RK ++ E +E+ +V +++ ++ + ++L+DA +QD Sbjct: 231 TEVVIDGQKYVLIDTAGVRKRKKVKEDIEKYSVIRTISAIERADIVLILIDANEGITEQD 290 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 +I G ++ +NKWD + + + + L + IS TG+ Sbjct: 291 TKIAGMAHEAGKGSIIVVNKWDAIEKNDKTMNQFTKELVNTLAYMKYAPCAFISALTGQR 350 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 ++ L ++ I + RI+T LN L + QN PP+ + ++ Y+TQ+ PP+F Sbjct: 351 VNKLFDTIKIIAQNQTLRISTGVLNDVLIEAMGQNQPPSDKGKALKIYYMTQVSIKPPTF 410 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 ++F N + SY+RY+ N++R F G PI + Sbjct: 411 ILFVNDKNLLHFSYQRYIENQMREAFGFKGTPIHFIVRE 449 >gi|259500656|ref|ZP_05743558.1| ribosome-associated GTPase EngA [Lactobacillus iners DSM 13335] gi|259168040|gb|EEW52535.1| ribosome-associated GTPase EngA [Lactobacillus iners DSM 13335] Length = 442 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 153/461 (33%), Positives = 243/461 (52%), Gaps = 32/461 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKST+FNR++ ++A+V + PG+TRDR+Y A G F +VDT GI Sbjct: 13 VALVGRPNVGKSTIFNRIINSRVAIVEDQPGVTRDRIYANAQWMGKQFVLVDTGGITFED 72 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N I +Q+ Q E+AINEA +I+ L D +T D I L K PII+ NK D Sbjct: 73 NV-IEEQIKTQAEIAINEADVIVMLSDVTGHVTNLDETIAKILYKAKKPIILAINKADNP 131 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + Y+ YSL + + +S H G +L I F N N Sbjct: 132 EQRNDIYDFYSLGLGDPIPVSGSHGTGLGDLLDAIVSKF--------------NGNNTTD 177 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 NI R +++GRPNVGKS+++N +LG NR++ G TRD++ Sbjct: 178 DDNNI---------------RFSIIGRPNVGKSSIVNSILGENRVIVADMEGTTRDAIDT 222 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + I DTAG+R+ ++ E +E+ +V +S+ ++ + I+++DA++ +QD Sbjct: 223 IFEKDGQKYTIVDTAGIRRKGKVYEKVEKYSVMRSISAIEQSDVAIIVIDASVGIIEQDK 282 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIY-INTISGRTGEG 363 I + G V++A+NKWD+ S +QD K I+ Q D I +S +TG+ Sbjct: 283 HIAGYAHDAGKGVIIAVNKWDVPSKTTTSMQDF-VKVIRQEFQYLDYAPIVFVSAKTGQR 341 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 ++D++ V + + + RI +S LN L P P + + R+ Y+TQ+ PP+F Sbjct: 342 IEDIVSLVKNVKENQQRRIQSSVLNDLLLDATRITPTPLVNGKRLRIYYMTQVAVVPPTF 401 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 ++F P + SYKR+LIN++R NF+ G PI++ + K Sbjct: 402 VVFVNDPELLHFSYKRFLINQMRQNFNFEGTPIKILARKRK 442 >gi|304317178|ref|YP_003852323.1| ribosome-associated GTPase EngA [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778680|gb|ADL69239.1| ribosome-associated GTPase EngA [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 439 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 150/458 (32%), Positives = 244/458 (53%), Gaps = 36/458 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + IVG PNVGKSTLFN++ +++++V + PG+TRDR+Y + G F +VDT G+ Sbjct: 6 VGIVGRPNVGKSTLFNKITGQRISIVEDKPGVTRDRIYYETEWLGRKFILVDTGGLEPDS 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 ++ Q E A+ LILF+ID+K G++P D I + LRK + +I+V NK+D+ Sbjct: 66 EDEFFSKIRMQVEAALKTVDLILFVIDAKDGLSPVDEDIANMLRKSHKKVILVLNKVDSF 125 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + ++Y+ L F E + ISA + LG EL + K P H + +EE Sbjct: 126 KEMPISYYDSMRLGFGEPIAISASNGLGIGELLDEVIK----NIPEHI------DDYDEE 175 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 + ++I +G+PNVGKS+L+N++LG R + G TRD++ Sbjct: 176 T-------------------IKICFIGKPNVGKSSLVNKILGEERAIVSDIPGTTRDALD 216 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + N I DTAGMRK RI + +E+ +V +++ ++ + I+++DAT +QD Sbjct: 217 TYFEKDNKKYVIIDTAGMRKKGRIEDKIERYSVLRALSAIDRSDICILVIDATEGPTEQD 276 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 +I F A+++A+NKWD++ N + + + + IS +TG+ Sbjct: 277 TKIAGYAFEQNKAIIIAVNKWDLIEKDNNTVNEYLKLIKEKFSFMSFASTIFISAKTGQR 336 Query: 364 LDDLMVSVLEINKLWKT---RITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 L+ L EIN +W+ RI+T LN+ + + L NPPP R ++ Y+TQ P Sbjct: 337 LNKLFE---EINSVWEEYNKRISTGLLNNVISEALLINPPPAEKGRLLKIYYVTQFGIKP 393 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 PSF +F P + SY R+L N +R NF G+P+++ Sbjct: 394 PSFAVFVNDPEIMHFSYVRFLENTIRDNFGFQGVPLKI 431 >gi|312871411|ref|ZP_07731506.1| ribosome biogenesis GTPase Der [Lactobacillus iners LEAF 3008A-a] gi|311093064|gb|EFQ51413.1| ribosome biogenesis GTPase Der [Lactobacillus iners LEAF 3008A-a] Length = 435 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 153/461 (33%), Positives = 243/461 (52%), Gaps = 32/461 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKST+FNR++ ++A+V + PG+TRDR+Y A G F +VDT GI Sbjct: 6 VALVGRPNVGKSTIFNRIINSRVAIVEDQPGVTRDRIYANAQWMGKQFVLVDTGGITFED 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N I +Q+ Q E+AINEA +I+ L D +T D I L K PII+ NK D Sbjct: 66 NV-IEEQIKTQAEIAINEADVIVMLSDVTGHVTNLDETIAKILYKAKKPIILAINKADNP 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + Y+ YSL + + +S H G +L I F N N Sbjct: 125 EQRNDIYDFYSLGLGDPIPVSGSHGTGLGDLLDAIVSKF--------------NGNNTTD 170 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 NI R +++GRPNVGKS+++N +LG NR++ G TRD++ Sbjct: 171 DDNNI---------------RFSIIGRPNVGKSSIVNSILGENRVIVAEMEGTTRDAIDT 215 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + I DTAG+R+ ++ E +E+ +V +S+ ++ + I+++DA++ +QD Sbjct: 216 IFEKDGQKYTIVDTAGIRRKGKVYEKVEKYSVMRSISAIEQSDVAIIVIDASVGIIEQDK 275 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIY-INTISGRTGEG 363 I + G V++A+NKWD+ S +QD K I+ Q D I +S +TG+ Sbjct: 276 HIAGYAHDAGKGVIIAVNKWDVPSKTTTSMQDF-VKVIRQEFQYLDYAPIVFVSAKTGQR 334 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 ++D++ V + + + RI +S LN L P P + + R+ Y+TQ+ PP+F Sbjct: 335 IEDIVSLVKNVKENQQRRIQSSVLNDLLLDATRITPTPLVNGKRLRIYYMTQVAVVPPTF 394 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 ++F P + SYKR+LIN++R NF+ G PI++ + K Sbjct: 395 VVFVNDPELLHFSYKRFLINQMRQNFNFEGTPIKILARKRK 435 >gi|297559956|ref|YP_003678930.1| ribosome-associated GTPase EngA [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296844404|gb|ADH66424.1| ribosome-associated GTPase EngA [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 478 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 141/457 (30%), Positives = 239/457 (52%), Gaps = 30/457 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKS+L NR++ ++ AVV + PG+TRDR+ A F +VDT G + Sbjct: 25 VAVVGRPNVGKSSLVNRIIGRREAVVEDVPGVTRDRVAYDAEWQNTRFTLVDTGGW-ETS 83 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +A + Q E A A +ILF++D+ G+T D A+T LR P+++ +NK+D Sbjct: 84 VSGLAAMVARQAEYAAQTADVILFVVDATVGVTDADAAVTRVLRSTKRPVVLAANKVDGS 143 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + + +++ L + ISA H GT +L + ++P PL EE Sbjct: 144 MQEADALDLWQLGVGQPFPISALHGRGTGDLLDALVA----EFPEQPL--------GEED 191 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 E+ P RIA++GRPNVGKS+L+NRL G +R++ + +G TRD+V Sbjct: 192 DGED-------------GPPRIALLGRPNVGKSSLLNRLAGEDRVVVDAVAGTTRDAVDE 238 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + DTAG+R+ R + + ++ ++ E +VL+D + P +QD+ Sbjct: 239 LIELGGKTWKFIDTAGIRRRFRALQGADYYATMRTGTALERAEAAVVLMDVSEPLAEQDI 298 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 R+V+ V G +VLA NKWD++ ++ L + + L ++ +S +TG + Sbjct: 299 RVVEQVVEAGRGLVLAFNKWDILDEERRTY--LEKEIDRQLARVSWAPRVNVSAKTGRHM 356 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 + L+ ++ W RI T LN+WL++ PPP + ++ + TQ S PP F+ Sbjct: 357 EKLVPAIETSLSGWNQRIPTGQLNNWLKELVAATPPPVRGGKQPKILFATQAGSRPPHFV 416 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 +F T + ++Y+R++ RLR +F G P+ + + Sbjct: 417 LFTT--GFLEDNYRRFIERRLREDFGFEGSPVHISMR 451 >gi|325283649|ref|YP_004256190.1| GTP-binding protein engA [Deinococcus proteolyticus MRP] gi|324315458|gb|ADY26573.1| GTP-binding protein engA [Deinococcus proteolyticus MRP] Length = 441 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 139/475 (29%), Positives = 261/475 (54%), Gaps = 50/475 (10%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 ++ +AIVG PNVGKS+LFNRL+ ++ AVV + PG+TRD + + +VDT G+ Sbjct: 1 MHKVAIVGRPNVGKSSLFNRLIGRREAVVADFPGVTRDAKEEIMLYHNHRITLVDTGGLW 60 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 G + ++ E A+ A ++F++D + G++ D+ + +LR+ P+++V+NK+ Sbjct: 61 SGDEWEAV--IREKAEWALEGADAVIFVLDPRDGLSAADYEVADWLRRLGRPVVVVANKI 118 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D+ + E+++L F E V ISAEH G +L I Sbjct: 119 DSPKHEPYLAELWALGFGEPVAISAEHARGLDDLMDRIM--------------------- 157 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 E P + + V ++ P+RI+++GRPNVGKS+L+N + +R + G TRDS Sbjct: 158 EHLPAD------EGDVSEVA-PIRISLIGRPNVGKSSLLNAITQSDRAIVADVPGTTRDS 210 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 + + W++ + DTAG+RK + ++E +++S ++ + ++L+A Sbjct: 211 LDVEWDYGGQRFVLVDTAGIRK--KPDTAIEDYAIQRSQAAIERSDLIWLVLNAD-DLGD 267 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQ-------IGDIYIN 354 +L++ + +++G V++ +NKWD+V D +DL+ +A K L Q +Y + Sbjct: 268 HELKLANLAYDSGKPVIVVVNKWDLVPD-----EDLK-RAEKELDQKLFHIAYAPRVYTS 321 Query: 355 TISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYIT 414 I+ G+ D++ +++ W++R+ T+ LN WL+ Q+++ P R ++ ++T Sbjct: 322 AINDY---GIHDMLAEAMKLYDKWQSRVPTAELNRWLEIWQMKHAVPNFGGRPLKMYFMT 378 Query: 415 QIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIK 469 Q++++PP+F IFC + + SY+ ++ NR+R + L+GIP+R+ ++ K PY K Sbjct: 379 QVETAPPTFAIFCNRADYVTRSYEGFIQNRIRDDLDLAGIPVRLKWK-EKGPYKK 432 >gi|218128437|ref|ZP_03457241.1| hypothetical protein BACEGG_00005 [Bacteroides eggerthii DSM 20697] gi|317475737|ref|ZP_07934996.1| ribosome-associated GTPase EngA [Bacteroides eggerthii 1_2_48FAA] gi|217989328|gb|EEC55641.1| hypothetical protein BACEGG_00005 [Bacteroides eggerthii DSM 20697] gi|316908120|gb|EFV29815.1| ribosome-associated GTPase EngA [Bacteroides eggerthii 1_2_48FAA] Length = 437 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 157/454 (34%), Positives = 240/454 (52%), Gaps = 30/454 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNRL K + A+V G TRDR YG++ G F++VDT G Sbjct: 5 VAIVGRPNVGKSTLFNRLTKTRQAIVNEEAGTTRDRQYGKSEWLGREFSVVDTGGWVVNS 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +++ Q +A++EA +ILF++D G+T D + S LR+ P+++V+NK D Sbjct: 65 DDIFEEEIRKQVLMAVDEADVILFVVDVMNGVTDLDLQVASILRRAKKPVLLVANKTDNN 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 Q N E YSL + ISA GT +L +I + FK K ++E Sbjct: 125 ELQYNAPEFYSLGLGDPYCISAVTGSGTGDLMDLIVENFK--------------KESDEI 170 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 E+I R AVVGRPN GKS+++N +G +R + +G TRDS+ Sbjct: 171 LDEDIP--------------RFAVVGRPNAGKSSIVNAFIGEDRNIVTEIAGTTRDSIYT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 +N + DTAG+RK +++ E LE +V +S++S+ + I++LDAT E QDL Sbjct: 217 RYNKFGFDFYLVDTAGIRKKNKVNEDLEYYSVIRSIRSIENSDVCILMLDATRGIESQDL 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKN-LPQIGDIYINTISGRTGEG 363 I + +V+ +NKWD+V DK + AI++ D I S T + Sbjct: 277 NIFSLIQKNSKGLVVVVNKWDLVEDKTVKVMKTFENAIRSRFAPFVDFPIIFASALTKQR 336 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP-PS 422 + ++ + + RI T+ LN + PPP I +Y ++KYITQ+ ++ PS Sbjct: 337 ILKVLEEARTVYENRMIRIPTARLNEEMLPLIEAYPPPAIKGKYIKIKYITQLPNTQIPS 396 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 F+ F P + E YKR+L N++R ++L+G PI Sbjct: 397 FVYFANLPQYVKEPYKRFLENKMREKWNLTGTPI 430 >gi|221194359|ref|ZP_03567416.1| ribosome-associated GTPase EngA [Atopobium rimae ATCC 49626] gi|221185263|gb|EEE17653.1| ribosome-associated GTPase EngA [Atopobium rimae ATCC 49626] Length = 440 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 152/463 (32%), Positives = 252/463 (54%), Gaps = 39/463 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTL NRL +++ A+V G+TRDR Y A NG F ++DT GI K Sbjct: 6 VAVVGRPNVGKSTLVNRLAQRREAIVHESRGVTRDRSYHDADWNGREFCLIDTGGIESVK 65 Query: 65 NCS-IAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + A + +Q LA EA +I+F++D K GIT D + +R+ + P+ +V NK D+ Sbjct: 66 SKDQFAPHIREQALLACEEADVIVFVVDGKTGITDEDEEVARIVRRSDKPVFLVVNKKDS 125 Query: 124 -RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 Q ++ Y+L E + ISA H +GT +L I + E + E Sbjct: 126 PETEQDGLWDFYALGVGEPLPISASHGIGTGDLLDGI--------------VAELPEERE 171 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 E ++I +R+A++GRPNVGKS+L NRL G R + + +G TRD++ Sbjct: 172 EPVDDSI--------------IRLAIIGRPNVGKSSLANRLAGKKRSIVSNVAGTTRDAI 217 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 WK+ PI + DTAGMR+ S++ E +E ++ + ++++ + ++++DAT+ +Q Sbjct: 218 DTMIMWKDQPICLVDTAGMRQKSKVHEDVEYYSLLRGLRAMDRADVCLLVIDATVGVTEQ 277 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMV--SDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 D ++ + G A+V LNKWD++ +K + K + P I I ++ ++GR Sbjct: 278 DQKLANMAVERGCALVGLLNKWDLIDTEEKQAEVSASVDKRMSFSPWIPFIRVSALTGRA 337 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLK--YITQIQS 418 +D ++ + L + I TS LN L T+++ ++ ++ RLK Y TQ S Sbjct: 338 ---IDKVLGAALAAAGARASEIRTSKLNDLL--TRIREGGHSVSDKGRRLKIHYATQTGS 392 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 PP +C P+ + ++Y+R++ NRLR F L+G P+R+ F+ Sbjct: 393 KPPVISFWCNAPDLVDDNYERFIENRLRECFDLTGTPLRLKFR 435 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 40/128 (31%), Positives = 66/128 (51%), Gaps = 12/128 (9%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI- 60 I +AI+G PNVGKS+L NRL KK ++V N G TRD + + +VDTAG+ Sbjct: 178 IIRLAIIGRPNVGKSSLANRLAGKKRSIVSNVAGTTRDAIDTMIMWKDQPICLVDTAGMR 237 Query: 61 ------ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPI 114 D + S+ + + A++ A + L +ID+ G+T D + + ++ + Sbjct: 238 QKSKVHEDVEYYSLLRGLR-----AMDRADVCLLVIDATVGVTEQDQKLANMAVERGCAL 292 Query: 115 IIVSNKMD 122 + + NK D Sbjct: 293 VGLLNKWD 300 >gi|332879048|ref|ZP_08446757.1| ribosome biogenesis GTPase Der [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332682997|gb|EGJ55885.1| ribosome biogenesis GTPase Der [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 437 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 152/454 (33%), Positives = 241/454 (53%), Gaps = 30/454 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNRL + + A+V + G TRDR YG++ G F+++DT G Sbjct: 5 VAIVGRPNVGKSTLFNRLTQTRHAIVSDEAGTTRDRQYGKSEWTGREFSVIDTGGWVVNS 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +++ Q LA EA +ILFL+D + G+T D A+ + LR+ P+I+V+NK DT Sbjct: 65 DDIFEEEIRKQVTLATEEADVILFLVDVRNGLTDLDEAVANILRRTKKPVILVANKADTN 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + E Y+L + ISA GT EL +I K+P K ++ Sbjct: 125 EWIYSAAEFYALGLGDPYCISAATGSGTGELLDLIV----SKFP----------KTTDDE 170 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 ENI R AVVGRPN GKS+LIN +G R + +G TRDS+ Sbjct: 171 TDENIP--------------RFAVVGRPNAGKSSLINAFIGEERNIVTDIAGTTRDSIYT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + DTAG+R+ +++TE LE +V +S++++ + I++LDA E QDL Sbjct: 217 RYTKFGFDFYLVDTAGIRRKNKVTEDLEYYSVMRSIRAIENSDVCILMLDAERGIEAQDL 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKN-LPQIGDIYINTISGRTGEG 363 I + ++V+ +NKWD+V +K ++ + AI++ + D I S T + Sbjct: 277 NIFQLIQRNNKSLVVVVNKWDLVENKTTVVMNEYEYAIRHRMAPFDDFPIIFASALTKQR 336 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP-PS 422 + ++ + E+ + K R+ T+ LN + PPP+I +Y ++KY Q+ + PS Sbjct: 337 IFKVLETAKEVYQNRKKRVATAKLNEEMLPLIEAYPPPSIKGKYIKIKYCMQLPDTQIPS 396 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 F+ + P + E Y+R+L N++R + SG PI Sbjct: 397 FVFYANLPQYVKEPYRRFLENKIRERWDFSGTPI 430 >gi|239907769|ref|YP_002954510.1| GTP-binding protein EngA [Desulfovibrio magneticus RS-1] gi|259645872|sp|C4XIQ6|DER_DESMR RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|239797635|dbj|BAH76624.1| GTP-binding protein EngA [Desulfovibrio magneticus RS-1] Length = 444 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 154/470 (32%), Positives = 250/470 (53%), Gaps = 42/470 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNRL + + A+ + PG+TRDRL A I G +VDT G+ Sbjct: 5 VAIVGRPNVGKSTLFNRLTRGRRAITHDLPGVTRDRLEAPAEIEGRFVTLVDTGGMDYEA 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD-- 122 S+A+Q+ +Q E A+ A ++LFL+D KAG T + + LR+ P+I+ NK+D Sbjct: 65 EESLARQIVEQAEAALVTADVVLFLVDGKAGRTALEDDLAERLRRLGKPVIVAVNKVDGL 124 Query: 123 TRIAQRNFYEIYSLDFKE----IVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 R+A + DF ++ ISA H G +EL I + + P P Sbjct: 125 ERVAA------MTADFHAWGLPLLAISAAHGQGMAELAEAIAERLPEAEPYDP------- 171 Query: 179 KRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 ++P + LR+AV+GRPN GKS+LIN L+G +RL+ +G T Sbjct: 172 ----DAPL-------------VQTVLRLAVLGRPNAGKSSLINALVGESRLIVSDIAGTT 214 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RD+V + + K DTAG+RK +RIT+ LE+ +V K++ S + + +V++DAT Sbjct: 215 RDAVDVVVHQKGKRYLFVDTAGVRKRTRITDGLERYSVAKALSSAKRADVAVVVIDATGG 274 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMV--SDKLNLLQDLRTKAIKNLPQIGDIYINTI 356 QD R++ + + A ++A+NK D+V D L L +D+ + L + + + Sbjct: 275 VGVQDKRLISFLDSERKAFLVAVNKTDLVPQKDMLALQKDI----ARELRMCSHVPVLYM 330 Query: 357 SGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQI 416 S G+G+ ++ I + RI T LN ++ + ++ PP + R + Y+TQ Sbjct: 331 SAAKGKGVAKVLPQAEAIWAECQIRIGTGELNRAMRASLDKHQPPLVNGRRAKFYYLTQA 390 Query: 417 QSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNP 466 +PP+F+ F + ++ +SY +YL N LR F ++ P+++ ++S P Sbjct: 391 ADAPPTFVFFVSDTERVRDSYIKYLENSLRKLFGIATAPVKVVCRASHKP 440 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 39/128 (30%), Positives = 63/128 (49%), Gaps = 12/128 (9%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAG-- 59 + +A++G PN GKS+L N LV + +V + G TRD + G + VDTAG Sbjct: 179 VLRLAVLGRPNAGKSSLINALVGESRLIVSDIAGTTRDAVDVVVHQKGKRYLFVDTAGVR 238 Query: 60 ----IADG-KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPI 114 I DG + S+AK ++ + A + + +ID+ G+ D + SFL + Sbjct: 239 KRTRITDGLERYSVAKALS-----SAKRADVAVVVIDATGGVGVQDKRLISFLDSERKAF 293 Query: 115 IIVSNKMD 122 ++ NK D Sbjct: 294 LVAVNKTD 301 >gi|227903851|ref|ZP_04021656.1| GTP-binding protein EngA [Lactobacillus acidophilus ATCC 4796] gi|227868738|gb|EEJ76159.1| GTP-binding protein EngA [Lactobacillus acidophilus ATCC 4796] Length = 435 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 141/460 (30%), Positives = 244/460 (53%), Gaps = 30/460 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNR++ +++A+V + PG+TRDR Y QA G F+++DT GI + Sbjct: 6 VAIVGQPNVGKSTLFNRIINQRLAIVEDKPGVTRDRNYAQAEWMGHKFDLIDTGGIT-WE 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I ++ Q E+AI EA +I+ L + +T D I L + P+I+ NK D Sbjct: 65 GGKIEDEIRAQAEIAIEEADVIVMLTNVVNHVTDLDERIARLLYRTKKPVILAVNKADNP 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + Y+ YSL + + +S+ H G +L I F P E ++S Sbjct: 125 EQRNDIYDFYSLGLGDPIPVSSSHGTGIGDLLDEIVNDF-------PAE--------KDS 169 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 +++ S +++GRPNVGKS+L+N+LLG +R++ ++ G TRD+V Sbjct: 170 EADDVIS--------------FSMIGRPNVGKSSLVNKLLGEDRVIVANEEGTTRDAVDT 215 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + ++ DTAG+R+ ++ E E+ +V ++M ++ + +++LDA+ +QD Sbjct: 216 PFTKDGIKFKVVDTAGIRRRGKVYEKTEKYSVLRAMSAIERSDVVLLVLDASTGIREQDK 275 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 + G +++ +NKWD+ ++ + + I +S +TG+ + Sbjct: 276 HVAGYAHEAGRGIIIVVNKWDLPEKNSTSAKEFEREIRSEFQYLDYAPILFVSAKTGQRI 335 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 D + V E+ + RI +S LN L + P P I + R+ Y+TQ+ ++PP+F+ Sbjct: 336 DQIPSMVKEVYENQNQRIQSSVLNDLLLEASKLVPTPMIKGKRLRVYYMTQVSTNPPTFV 395 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 +F P + SY+R+LIN+LR NF +G PI++ + K Sbjct: 396 VFVNDPELMHFSYERFLINQLRQNFDFTGTPIKILPRKRK 435 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 48/181 (26%), Positives = 90/181 (49%), Gaps = 21/181 (11%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI- 60 + + +++G PNVGKS+L N+L+ + +V N G TRD + +G+ F +VDTAGI Sbjct: 174 VISFSMIGRPNVGKSSLVNKLLGEDRVIVANEEGTTRDAVDTPFTKDGIKFKVVDTAGIR 233 Query: 61 ------ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPI 114 + S+ + M+ AI + ++L ++D+ GI D + + + I Sbjct: 234 RRGKVYEKTEKYSVLRAMS-----AIERSDVVLLVLDASTGIREQDKHVAGYAHEAGRGI 288 Query: 115 IIVSNKMD----TRIAQRNFY-----EIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQ 165 IIV NK D + + F E LD+ I+ +SA+ ++ S++ ++++ Sbjct: 289 IIVVNKWDLPEKNSTSAKEFEREIRSEFQYLDYAPILFVSAKTGQRIDQIPSMVKEVYEN 348 Query: 166 K 166 + Sbjct: 349 Q 349 >gi|227879096|ref|ZP_03996985.1| GTP-binding protein EngA [Lactobacillus crispatus JV-V01] gi|256843085|ref|ZP_05548573.1| ribosome-associated GTPase EngA [Lactobacillus crispatus 125-2-CHN] gi|256850263|ref|ZP_05555692.1| phosphoglycerate dehydrogenase [Lactobacillus crispatus MV-1A-US] gi|262046345|ref|ZP_06019307.1| ribosome-associated GTPase EngA [Lactobacillus crispatus MV-3A-US] gi|293379768|ref|ZP_06625900.1| ribosome-associated GTPase EngA [Lactobacillus crispatus 214-1] gi|312977269|ref|ZP_07789017.1| ribosome-associated GTPase EngA [Lactobacillus crispatus CTV-05] gi|227861337|gb|EEJ68967.1| GTP-binding protein EngA [Lactobacillus crispatus JV-V01] gi|256614505|gb|EEU19706.1| ribosome-associated GTPase EngA [Lactobacillus crispatus 125-2-CHN] gi|256712900|gb|EEU27892.1| phosphoglycerate dehydrogenase [Lactobacillus crispatus MV-1A-US] gi|260573216|gb|EEX29774.1| ribosome-associated GTPase EngA [Lactobacillus crispatus MV-3A-US] gi|290923677|gb|EFE00548.1| ribosome-associated GTPase EngA [Lactobacillus crispatus 214-1] gi|310895700|gb|EFQ44766.1| ribosome-associated GTPase EngA [Lactobacillus crispatus CTV-05] Length = 435 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 138/460 (30%), Positives = 243/460 (52%), Gaps = 30/460 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNR++ +++A+V + PG+TRDR Y QA G F+++DT GI + Sbjct: 6 VAIVGQPNVGKSTLFNRIINQRLAIVEDKPGVTRDRNYAQAEWMGHKFDLIDTGGIT-WE 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I +++ Q E+AI EA +I+ L + +T D I L + P+I+ NK D Sbjct: 65 GGKIEEEIRAQAEIAIEEADVIVMLTNVVNHVTDLDERIAHLLYRTKKPVILAVNKADNP 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + Y+ YSL + + +S+ H G +L I F ++++ Sbjct: 125 EQRSDIYDFYSLGLGDPIPVSSSHGTGIGDLLDQIVNDFPD---------------DKDT 169 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 +++ S +V+GRPNVGKS+++N+LLG +R++ ++ G TRD+V Sbjct: 170 EADDVIS--------------FSVIGRPNVGKSSIVNKLLGEDRVIVANEEGTTRDAVDT 215 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + ++ DTAG+R+ ++ E E+ +V ++M ++ + +++LDA+ +QD Sbjct: 216 PFTHDGVKFKVVDTAGIRRRGKVYEKTEKYSVMRAMSAIERSDVVLLVLDASTGIREQDK 275 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 + G +++ +NKWD+ ++ + + I +S +TG+ L Sbjct: 276 HVAGYAHEAGRGIIIVVNKWDLPKKNSTSAKEFEREIRDEFQYLDYAPILFVSAKTGQRL 335 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 D + V E+ RI +S LN L + P P + + R+ Y+TQ+ ++PP+F+ Sbjct: 336 DQIPNMVKEVYDNQNQRIQSSVLNDLLLEASKLVPTPMVKGKRLRVYYMTQVSTNPPTFV 395 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 +F P + SY+R+LIN+LR NF +G PI++ + K Sbjct: 396 VFVNDPELMHFSYERFLINQLRQNFDFTGTPIKILPRKRK 435 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 52/185 (28%), Positives = 88/185 (47%), Gaps = 25/185 (13%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI- 60 + + +++G PNVGKS++ N+L+ + +V N G TRD + +GV F +VDTAGI Sbjct: 174 VISFSVIGRPNVGKSSIVNKLLGEDRVIVANEEGTTRDAVDTPFTHDGVKFKVVDTAGIR 233 Query: 61 ------ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPI 114 + S+ + M+ AI + ++L ++D+ GI D + + + I Sbjct: 234 RRGKVYEKTEKYSVMRAMS-----AIERSDVVLLVLDASTGIREQDKHVAGYAHEAGRGI 288 Query: 115 IIVSNKMD----TRIAQRNFY-----EIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQ 165 IIV NK D + + F E LD+ I+ +SA+ T + I + K+ Sbjct: 289 IIVVNKWDLPKKNSTSAKEFEREIRDEFQYLDYAPILFVSAK----TGQRLDQIPNMVKE 344 Query: 166 KYPNH 170 Y N Sbjct: 345 VYDNQ 349 >gi|300934024|ref|ZP_07149280.1| bifunctional cytidylate kinase/GTP-binding protein [Corynebacterium resistens DSM 45100] Length = 811 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 151/465 (32%), Positives = 244/465 (52%), Gaps = 42/465 (9%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI- 60 + T+AIVG PNVGKSTL NR + ++ AVV + PG+TRDR+ G F + DT G Sbjct: 376 LCTVAIVGRPNVGKSTLVNRFIGRREAVVEDFPGVTRDRISYLGEWTGRRFWVQDTGGWD 435 Query: 61 --ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVS 118 A G + +IA+Q E A++ A +I+F++D+K GIT D I L++ +IP+I+V+ Sbjct: 436 PDAKGIHAAIARQ----AETAMDTADVIVFVVDTKVGITATDEVIARKLQRSSIPVILVA 491 Query: 119 NKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 NK D+ + E + L +SA+H G +++ + F P+ P E Sbjct: 492 NKFDSDSQYADMAEFWGLGLGNPFPVSAQHGRGAADVLDQVLSDF----PDQPRE----- 542 Query: 179 KRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 +S+ +S P R+A+VGRPNVGKS+L+N++ G R + + +G T Sbjct: 543 ----------------TSI--VSGPRRVALVGRPNVGKSSLLNKVTGEERSVVDNVAGTT 584 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 D V H DTAG+RK ++ E ++ ++ E I L+DA+ P Sbjct: 585 VDPVDSIVELDEHTWRFVDTAGIRKKTKTARGHEFYASLRTRAAIDAAEVAIFLVDASEP 644 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSD--KLNLLQDLRTKAIKNLPQIGDIYINTI 356 +QD R++ + ++G A+V+A NKWD+V + + L +++ + + ++P + I+ Sbjct: 645 IAEQDQRVLRLILDSGKALVVAYNKWDLVDEDRRWELEREIDLQ-LAHVPWARRVNISAK 703 Query: 357 SGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQI 416 +GR + L+ MV LE W RI T LN+WL+ Q PPP R R+ + TQ Sbjct: 704 TGRALKKLEPAMVEALES---WDKRIPTGQLNTWLRAVIAQTPPPMRGGRLPRVLFATQA 760 Query: 417 QSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 + PP ++F T + Y+R+L +LR F G P+R+ + Sbjct: 761 STKPPVIVLFTT--GFLEHGYRRFLERKLREAFGFEGSPVRIAVR 803 >gi|288941004|ref|YP_003443244.1| ribosome-associated GTPase EngA [Allochromatium vinosum DSM 180] gi|288896376|gb|ADC62212.1| ribosome-associated GTPase EngA [Allochromatium vinosum DSM 180] Length = 467 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 160/475 (33%), Positives = 243/475 (51%), Gaps = 36/475 (7%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ I ++G PNVGKSTLFNRL + + A+V + PG+TRDR YG I + IVDT GI Sbjct: 1 MLPVITLIGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRQYGIGRIGPRPYVIVDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 I M Q + A+ EA +LF++D++ G TP D I LR+ PI +V NK Sbjct: 61 GTAAE-GIEALMERQVQRAVEEADHLLFMVDTRDGCTPEDIDIAQRLRRLGKPITLVVNK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 DT + + L + SA LG L +F+ H E E + Sbjct: 120 SDTMDPTLAVTDFHRLGLGDPWAASATQGLGVRGLIDHVFE--------HLPESAEEDAA 171 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 + E + +++AVVGRPN GKSTLINRLLG R +T G TRD Sbjct: 172 DIEHDR-----------------IKVAVVGRPNAGKSTLINRLLGEERQVTFDSPGTTRD 214 Query: 241 SVSISWNWKNHP--IEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 S+ I + H + DTAG+R+ +R+ + +E+ +V K++Q++ I+++DA Sbjct: 215 SIFIPFERPGHDQRYTLIDTAGLRRRARVHDPIEKFSVIKTLQAIEEANVIILVIDAHEG 274 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVS-DKLNLLQD--LRTKAIKNLPQIGDIYINT 355 +QD + + +G A+V+A+NKWD + D N ++D R A + ++ + Sbjct: 275 IGEQDATLAGHIIESGRALVVAINKWDGLDPDARNRVRDQFARKLAFLDFAKLHRVSALY 334 Query: 356 ISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQ 415 SG G LDD+ ++ + ++T L L+ +++ PP + R +L+Y Q Sbjct: 335 GSG-VGHVLDDVDLAYANATR----DLSTPELTRLLEAAVMEHQPPLVHGRRIKLRYAHQ 389 Query: 416 IQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I + +PE+YKRYLINR R L G P+R+ F+S NPY K Sbjct: 390 GGRNPPIIVIHGNQTDVVPETYKRYLINRFRKELDLLGTPLRLEFKSGSNPYQGK 444 >gi|282890013|ref|ZP_06298547.1| hypothetical protein pah_c009o032 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281500105|gb|EFB42390.1| hypothetical protein pah_c009o032 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 493 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 143/458 (31%), Positives = 238/458 (51%), Gaps = 38/458 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKS LFN++ KK+A+V G+TRDRLY +A + G F ++DT GI Sbjct: 12 LALVGRPNVGKSALFNKICGKKIAIVDEAEGVTRDRLYAEADLFGRHFQVIDTGGINPRS 71 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +++ Q E+AI EA I+ ++DS G+T DH + L + + P+ + NK+D Sbjct: 72 DAPFNEEVKRQAEIAIEEADTIVMVVDSHVGLTALDHEVAQILLRTSKPLCLAVNKIDHP 131 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + YE SL V +SA +EL PL + Sbjct: 132 SQEHLIYEFQSLGITNKVAVSATQSWRIAELLEAALD---------PLSL---------- 172 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 I E KPL IA++GRPNVGKS+LIN LL R + G TRDSV + Sbjct: 173 ---EIGEE------ETDKPLAIAIIGRPNVGKSSLINYLLDEQRCIVSPIPGTTRDSVDV 223 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 S+ H + DTAG+R+ E +++ ++ +++ + +++LD+ Q+ Sbjct: 224 SFTHNEHAYTLIDTAGIRRKHSEHEVVDKFAAIRTERAIARADICLLVLDSQQGITVQEK 283 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSD--KLNLLQDLRTKA--IKNLPQIGDIYINTISGRT 360 RI + + G +L NKWD+V + L+++ ++A + + P+I +S +T Sbjct: 284 RIANLIEEAGKGCILLFNKWDLVKGFRMEHCLKEIESEASFLNHCPKI------FMSAKT 337 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G ++ + + +++ + RITT LN +++ +N PP + + R+ Y+ Q+ +P Sbjct: 338 GRNVEKIFEEIQTVHENSQKRITTHQLNKFIEVAMQRNHPPMMMGKRLRIYYMAQVAVNP 397 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 P F++F +PN + ESYK+YL N+ R + +G+PI M Sbjct: 398 PKFILFVNYPNLMMESYKKYLYNQFREAYGFTGVPILM 435 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 35/145 (24%), Positives = 73/145 (50%), Gaps = 3/145 (2%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 +S+ ++A+VGRPNVGKS L N++ G + G+TRD + + ++ DT Sbjct: 6 MSRLPKLALVGRPNVGKSALFNKICGKKIAIVDEAEGVTRDRLYAEADLFGRHFQVIDTG 65 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+ R ++ +++ ++ +T ++++D+ + D + + T + L Sbjct: 66 GIN--PRSDAPFNEEVKRQAEIAIEEADTIVMVVDSHVGLTALDHEVAQILLRTSKPLCL 123 Query: 320 ALNKWDMVSDKLNLLQDLRTKAIKN 344 A+NK D S + +L+ + ++ I N Sbjct: 124 AVNKIDHPSQE-HLIYEFQSLGITN 147 >gi|154686532|ref|YP_001421693.1| GTP-binding protein EngA [Bacillus amyloliquefaciens FZB42] gi|166224304|sp|A7Z636|DER_BACA2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|154352383|gb|ABS74462.1| EngA [Bacillus amyloliquefaciens FZB42] Length = 436 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 141/460 (30%), Positives = 241/460 (52%), Gaps = 29/460 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST+FNR+ +++++V + PG+TRDR+Y A FN++DT GI G Sbjct: 6 VAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGD 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + Q+ Q E+A++EA +I+F+++ + G+T D + L + P+++ NK+D Sbjct: 66 EPFLT-QIRQQAEIAMDEADVIIFMVNGREGVTSADEEVAKILYRTKKPVVLAVNKLDNT 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + N Y+ Y+L F E IS H LG +L + FK N P Sbjct: 125 EMRANIYDFYALGFGEPYPISGTHGLGLGDLLDACAEHFK----NIP------------- 167 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 K ++ ++GRPNVGKS+L+N +LG R++ + +G TRD+V Sbjct: 168 -----------ETKYSDDVVQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 ++ + I DTAGMRK ++ E+ E+ +V ++++++ + V+L+A +QD Sbjct: 217 AFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSDVVGVVLNAEEGILEQDK 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 RI G AVV+ +NKWD V +++ ++ + + +S T + + Sbjct: 277 RIAGYAHEAGKAVVIIVNKWDAVDKDERTMKEFEQNIREHFQFLDYAPVLFMSALTTKRI 336 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 LM ++++ ++ R+ T+ LN + NP PT ++ Y TQ+ PPSF+ Sbjct: 337 HTLMPAIIKASENHSLRVQTNVLNDVIMDAVAMNPTPTHNGSRLKIYYATQVAVKPPSFV 396 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 +F P + SY+R+L NR+R F G PI++ ++ K Sbjct: 397 VFVNDPELMHFSYERFLENRIRDAFGFEGTPIKIFARARK 436 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 51/187 (27%), Positives = 92/187 (49%), Gaps = 15/187 (8%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI- 60 + ++G PNVGKS+L N ++ ++ +V N G TRD + N F IVDTAG+ Sbjct: 175 VVQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTAFTYNQQEFVIVDTAGMR 234 Query: 61 ADGKNCSIAKQMNDQTEL-AINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 GK ++ + L AI+ + ++ +++++ GI D I + + ++I+ N Sbjct: 235 KKGKVYETTEKYSVLRALKAIDRSDVVGVVLNAEEGILEQDKRIAGYAHEAGKAVVIIVN 294 Query: 120 KMDT--------RIAQRNFYEIYS-LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNH 170 K D + ++N E + LD+ ++ +SA L T +H+++ I K NH Sbjct: 295 KWDAVDKDERTMKEFEQNIREHFQFLDYAPVLFMSA---LTTKRIHTLMPAIIKAS-ENH 350 Query: 171 PLEMIEN 177 L + N Sbjct: 351 SLRVQTN 357 >gi|313665450|ref|YP_004047321.1| ribosome-associated GTPase EngA [Mycoplasma leachii PG50] gi|312949987|gb|ADR24583.1| ribosome-associated GTPase EngA [Mycoplasma leachii PG50] Length = 435 Score = 251 bits (640), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 150/462 (32%), Positives = 250/462 (54%), Gaps = 34/462 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKS+LFNR++K+K ++V N PG+TRDR+Y A F +VDT GI+ + Sbjct: 6 VAIVGKPNVGKSSLFNRIIKEKKSIVDNKPGVTRDRIYSNAEWLTREFILVDTGGISIDQ 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + ++ QT++AI +A +I+F++D + D I L K P+I+ NK D + Sbjct: 66 QL-FSNEIQIQTQIAIEQADVIIFVVDFLNRLDKDDKMIAKILHKSKKPVILAINKYDKK 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + YE +L F ++ IS+ H +G +L ++I +N+ Sbjct: 125 TIDDHNYEFMNLGFSDLYFISSTHGIGIGDLLD---------------KVISYISKNDAD 169 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 K++ T +IA++GRPNVGKS+L+N L+ NR++ G T D+V I Sbjct: 170 LKDDST--------------KIAIIGRPNVGKSSLVNSLVNENRMIVSEIEGTTLDAVDI 215 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 S+++ + + DTAG+RK S++ +++E+ + +S+ ++ + ++++DAT P QD Sbjct: 216 SFSYNKNKYTVIDTAGIRKKSKLGQTVEKYSYLRSLSAITNSDIVLLMIDATKPITDQDT 275 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 I +++ V++ +NKWD+V +K + + I I IS + Sbjct: 276 NIGGLIYDEKKPVIIVVNKWDLVKNKQEQILKKEEEIRAYFKYISYAKIIFISAPDKTRV 335 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLK--YITQIQSSPPS 422 ++ V +I + ++ T LN L K QL NP P FN NRLK Y +Q+Q+ P+ Sbjct: 336 TKILDLVADIKQSLSVKVKTYVLNEVLNKAQLINPAPE-FNG-NRLKIYYASQVQAYIPT 393 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 F++FC PN + SYKR+L N++R +F IPI + F+ K Sbjct: 394 FVLFCNHPNYLHFSYKRFLENQIRFSFGFDSIPINLIFRERK 435 >gi|297591047|ref|ZP_06949685.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp. aureus MN8] gi|297575933|gb|EFH94649.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp. aureus MN8] Length = 436 Score = 251 bits (640), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 141/455 (30%), Positives = 233/455 (51%), Gaps = 29/455 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST+FNR+V +++++V + PG+TRDR+Y FNI+DT GI G Sbjct: 6 VAIVGRPNVGKSTIFNRIVGERVSIVEDTPGVTRDRIYSSGEWLTHDFNIIDTGGIEIG- 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + Q+ Q E+AI+EA +I+F+++ + G+T D + L K P+++ NK+D Sbjct: 65 DAPFQTQIRAQAEIAIDEADVIIFMVNVREGLTQSDEMVAQILYKSKKPVVLAVNKVDNM 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + Y+ YSL F E IS H LG +L + F ++ Sbjct: 125 EMRTDVYDFYSLGFGEPYPISGAHGLGLGDLLDAVVSHFGEE------------------ 166 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 +R++++GRPNVGKS+L+N +LG +R++ + +G TRD++ Sbjct: 167 ----------EEDPYDEDTIRLSIIGRPNVGKSSLVNAILGEDRVIVSNVAGTTRDAIDT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 +++ + DTAGMRK ++ ES E+ +V ++++++ +V++DA +QD Sbjct: 217 EYSYDGQDYVLIDTAGMRKKGKVYESTEKYSVLRALKAIERSNVVLVVIDAEQGIIEQDK 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 R+ G AVV+ +NKWD V ++ + K + I +S + L Sbjct: 277 RVAGYAHEQGKAVVIVVNKWDTVEKDSKTMKKFEDEVRKEFQFLDYAQIAFVSAKERTRL 336 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 L + E ++ K R+ +S LN + NP PT R + Y TQ+ PP+F+ Sbjct: 337 RTLFPYINEASENHKKRVQSSTLNEVVTDAISMNPTPTDKGRRLNVFYATQVAIEPPTFV 396 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 +F + SYKRYL N++R F G PI + Sbjct: 397 VFVNDVELMHFSYKRYLENQIRAAFGFEGTPIHII 431 >gi|15924465|ref|NP_371999.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus Mu50] gi|15927056|ref|NP_374589.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus N315] gi|21283093|ref|NP_646181.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus MW2] gi|49483662|ref|YP_040886.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus MRSA252] gi|49486314|ref|YP_043535.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus MSSA476] gi|57650430|ref|YP_186359.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus COL] gi|88195209|ref|YP_500010.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148267959|ref|YP_001246902.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus JH9] gi|150394023|ref|YP_001316698.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus JH1] gi|151221596|ref|YP_001332418.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus str. Newman] gi|156979794|ref|YP_001442053.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus Mu3] gi|221140958|ref|ZP_03565451.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253315982|ref|ZP_04839195.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253732117|ref|ZP_04866282.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253733278|ref|ZP_04867443.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus TCH130] gi|255006261|ref|ZP_05144862.2| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257425539|ref|ZP_05601964.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp. aureus 55/2053] gi|257428198|ref|ZP_05604596.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp. aureus 65-1322] gi|257430828|ref|ZP_05607210.1| small GTP-binding protein [Staphylococcus aureus subsp. aureus 68-397] gi|257433587|ref|ZP_05609945.1| GTP-binding protein engA [Staphylococcus aureus subsp. aureus E1410] gi|257436428|ref|ZP_05612475.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp. aureus M876] gi|257795470|ref|ZP_05644449.1| ribosome-associated GTPase EngA [Staphylococcus aureus A9781] gi|258413278|ref|ZP_05681554.1| small GTP-binding protein [Staphylococcus aureus A9763] gi|258420615|ref|ZP_05683557.1| ribosome-associated GTPase EngA [Staphylococcus aureus A9719] gi|258422494|ref|ZP_05685402.1| ribosome-associated GTPase EngA [Staphylococcus aureus A9635] gi|258426810|ref|ZP_05688030.1| GTP-binding protein engA [Staphylococcus aureus A9299] gi|258444808|ref|ZP_05693137.1| GTP-binding protein engA [Staphylococcus aureus A8115] gi|258447358|ref|ZP_05695502.1| small GTP-binding protein [Staphylococcus aureus A6300] gi|258449757|ref|ZP_05697858.1| GTP-binding protein engA [Staphylococcus aureus A6224] gi|258451133|ref|ZP_05699168.1| GTP-binding protein engA [Staphylococcus aureus A5948] gi|258454573|ref|ZP_05702537.1| ribosome-associated GTPase EngA [Staphylococcus aureus A5937] gi|262048997|ref|ZP_06021876.1| GTP-binding protein EngA [Staphylococcus aureus D30] gi|262051644|ref|ZP_06023864.1| GTP-binding protein EngA [Staphylococcus aureus 930918-3] gi|269203100|ref|YP_003282369.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus ED98] gi|282892972|ref|ZP_06301207.1| ribosome-associated GTPase EngA [Staphylococcus aureus A8117] gi|282904057|ref|ZP_06311945.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp. aureus C160] gi|282905821|ref|ZP_06313676.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp. aureus Btn1260] gi|282911052|ref|ZP_06318854.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp. aureus WBG10049] gi|282914265|ref|ZP_06322052.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp. aureus M899] gi|282919188|ref|ZP_06326923.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp. aureus C427] gi|282921722|ref|ZP_06329439.1| ribosome-associated GTPase EngA [Staphylococcus aureus A9765] gi|282924372|ref|ZP_06332046.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp. aureus C101] gi|282928003|ref|ZP_06335612.1| ribosome-associated GTPase EngA [Staphylococcus aureus A10102] gi|283958239|ref|ZP_06375690.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp. aureus A017934/97] gi|284024473|ref|ZP_06378871.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus 132] gi|293501290|ref|ZP_06667141.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp. aureus 58-424] gi|293510252|ref|ZP_06668960.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp. aureus M809] gi|293526847|ref|ZP_06671531.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp. aureus M1015] gi|295407224|ref|ZP_06817024.1| ribosome-associated GTPase EngA [Staphylococcus aureus A8819] gi|295427983|ref|ZP_06820615.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp. aureus EMRSA16] gi|296275328|ref|ZP_06857835.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus MR1] gi|297207866|ref|ZP_06924299.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297244648|ref|ZP_06928531.1| ribosome-associated GTPase EngA [Staphylococcus aureus A8796] gi|300911951|ref|ZP_07129394.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp. aureus TCH70] gi|304380942|ref|ZP_07363601.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|54037051|sp|P64060|DER_STAAN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|54037052|sp|P64061|DER_STAAW RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|54040975|sp|P64059|DER_STAAM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|56748972|sp|Q6G988|DER_STAAS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|56749026|sp|Q6GGT6|DER_STAAR RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|71151865|sp|Q5HFU8|DER_STAAC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|122539535|sp|Q2FYG0|DER_STAA8 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|166225860|sp|A7X2I1|DER_STAA1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|172048892|sp|A6QH24|DER_STAAE RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|189037164|sp|A6U1U3|DER_STAA2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|189037165|sp|A5IT03|DER_STAA9 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|13701274|dbj|BAB42568.1| SA1307 [Staphylococcus aureus subsp. aureus N315] gi|14247246|dbj|BAB57637.1| GTP-binding protein [Staphylococcus aureus subsp. aureus Mu50] gi|21204533|dbj|BAB95229.1| MW1364 [Staphylococcus aureus subsp. aureus MW2] gi|49241791|emb|CAG40482.1| putative GTPase [Staphylococcus aureus subsp. aureus MRSA252] gi|49244757|emb|CAG43193.1| putative GTPase [Staphylococcus aureus subsp. aureus MSSA476] gi|57284616|gb|AAW36710.1| GTP-binding protein, Era/TrmE family [Staphylococcus aureus subsp. aureus COL] gi|87202767|gb|ABD30577.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147741028|gb|ABQ49326.1| small GTP-binding protein [Staphylococcus aureus subsp. aureus JH9] gi|149946475|gb|ABR52411.1| small GTP-binding protein [Staphylococcus aureus subsp. aureus JH1] gi|150374396|dbj|BAF67656.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus str. Newman] gi|156721929|dbj|BAF78346.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|253724164|gb|EES92893.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253728818|gb|EES97547.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus TCH130] gi|257271996|gb|EEV04134.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp. aureus 55/2053] gi|257275039|gb|EEV06526.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp. aureus 65-1322] gi|257278956|gb|EEV09575.1| small GTP-binding protein [Staphylococcus aureus subsp. aureus 68-397] gi|257281680|gb|EEV11817.1| GTP-binding protein engA [Staphylococcus aureus subsp. aureus E1410] gi|257284710|gb|EEV14830.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp. aureus M876] gi|257789442|gb|EEV27782.1| ribosome-associated GTPase EngA [Staphylococcus aureus A9781] gi|257839842|gb|EEV64310.1| small GTP-binding protein [Staphylococcus aureus A9763] gi|257843563|gb|EEV67970.1| ribosome-associated GTPase EngA [Staphylococcus aureus A9719] gi|257847251|gb|EEV71257.1| ribosome-associated GTPase EngA [Staphylococcus aureus A9635] gi|257849971|gb|EEV73929.1| GTP-binding protein engA [Staphylococcus aureus A9299] gi|257850301|gb|EEV74254.1| GTP-binding protein engA [Staphylococcus aureus A8115] gi|257853549|gb|EEV76508.1| small GTP-binding protein [Staphylococcus aureus A6300] gi|257857005|gb|EEV79905.1| GTP-binding protein engA [Staphylococcus aureus A6224] gi|257861188|gb|EEV84001.1| GTP-binding protein engA [Staphylococcus aureus A5948] gi|257862956|gb|EEV85720.1| ribosome-associated GTPase EngA [Staphylococcus aureus A5937] gi|259160485|gb|EEW45509.1| GTP-binding protein EngA [Staphylococcus aureus 930918-3] gi|259162929|gb|EEW47492.1| GTP-binding protein EngA [Staphylococcus aureus D30] gi|262075390|gb|ACY11363.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus ED98] gi|269940966|emb|CBI49350.1| putative GTPase [Staphylococcus aureus subsp. aureus TW20] gi|282313759|gb|EFB44152.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp. aureus C101] gi|282316998|gb|EFB47372.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp. aureus C427] gi|282322333|gb|EFB52657.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp. aureus M899] gi|282324747|gb|EFB55057.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp. aureus WBG10049] gi|282331113|gb|EFB60627.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp. aureus Btn1260] gi|282590300|gb|EFB95380.1| ribosome-associated GTPase EngA [Staphylococcus aureus A10102] gi|282593984|gb|EFB98973.1| ribosome-associated GTPase EngA [Staphylococcus aureus A9765] gi|282595675|gb|EFC00639.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp. aureus C160] gi|282764969|gb|EFC05094.1| ribosome-associated GTPase EngA [Staphylococcus aureus A8117] gi|283470686|emb|CAQ49897.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus ST398] gi|283790388|gb|EFC29205.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp. aureus A017934/97] gi|285817155|gb|ADC37642.1| GTP-binding protein EngA [Staphylococcus aureus 04-02981] gi|290920405|gb|EFD97469.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp. aureus M1015] gi|291096295|gb|EFE26556.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp. aureus 58-424] gi|291467196|gb|EFF09714.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp. aureus M809] gi|294967937|gb|EFG43966.1| ribosome-associated GTPase EngA [Staphylococcus aureus A8819] gi|295128341|gb|EFG57975.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp. aureus EMRSA16] gi|296887440|gb|EFH26340.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297178678|gb|EFH37924.1| ribosome-associated GTPase EngA [Staphylococcus aureus A8796] gi|298694764|gb|ADI97986.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus ED133] gi|300886197|gb|EFK81399.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp. aureus TCH70] gi|302751305|gb|ADL65482.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340528|gb|EFM06463.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312438122|gb|ADQ77193.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp. aureus TCH60] gi|312829865|emb|CBX34707.1| small GTP-binding domain protein [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129191|gb|EFT85186.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus CGS03] gi|315195372|gb|EFU25759.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus CGS00] gi|323439522|gb|EGA97243.1| GTP-binding protein EngA [Staphylococcus aureus O11] gi|323442239|gb|EGA99870.1| GTP-binding protein EngA [Staphylococcus aureus O46] gi|329314151|gb|AEB88564.1| GTP-binding protein engA [Staphylococcus aureus subsp. aureus T0131] gi|329723199|gb|EGG59730.1| ribosome biogenesis GTPase Der [Staphylococcus aureus subsp. aureus 21189] gi|329727642|gb|EGG64098.1| ribosome biogenesis GTPase Der [Staphylococcus aureus subsp. aureus 21172] gi|329731317|gb|EGG67683.1| ribosome biogenesis GTPase Der [Staphylococcus aureus subsp. aureus 21193] Length = 436 Score = 251 bits (640), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 141/455 (30%), Positives = 233/455 (51%), Gaps = 29/455 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST+FNR+V +++++V + PG+TRDR+Y FNI+DT GI G Sbjct: 6 VAIVGRPNVGKSTIFNRIVGERVSIVEDTPGVTRDRIYSSGEWLTHDFNIIDTGGIEIG- 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + Q+ Q E+AI+EA +I+F+++ + G+T D + L K P+++ NK+D Sbjct: 65 DAPFQTQIRAQAEIAIDEADVIIFMVNVREGLTQSDEMVAQILYKSKKPVVLAVNKVDNM 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + Y+ YSL F E IS H LG +L + F ++ Sbjct: 125 EMRTDVYDFYSLGFGEPYPISGSHGLGLGDLLDAVVSHFGEE------------------ 166 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 +R++++GRPNVGKS+L+N +LG +R++ + +G TRD++ Sbjct: 167 ----------EEDPYDEDTIRLSIIGRPNVGKSSLVNAILGEDRVIVSNVAGTTRDAIDT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 +++ + DTAGMRK ++ ES E+ +V ++++++ +V++DA +QD Sbjct: 217 EYSYDGQDYVLIDTAGMRKKGKVYESTEKYSVLRALKAIERSNVVLVVIDAEQGIIEQDK 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 R+ G AVV+ +NKWD V ++ + K + I +S + L Sbjct: 277 RVAGYAHEQGKAVVIVVNKWDTVEKDSKTMKKFEDEVRKEFQFLDYAQIAFVSAKERTRL 336 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 L + E ++ K R+ +S LN + NP PT R + Y TQ+ PP+F+ Sbjct: 337 RTLFPYINEASENHKKRVQSSTLNEVVTDAISMNPTPTDKGRRLNVFYATQVAIEPPTFV 396 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 +F + SYKRYL N++R F G PI + Sbjct: 397 VFVNDVELMHFSYKRYLENQIRAAFGFEGTPIHII 431 >gi|167562554|ref|ZP_02355470.1| GTP-binding protein EngA [Burkholderia oklahomensis EO147] Length = 445 Score = 251 bits (640), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 155/467 (33%), Positives = 239/467 (51%), Gaps = 28/467 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+ + + +VDT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGVRPYLVVDTGGFEPVA 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I +M QT A+ EA +++F++D + G+ P D +I +LRK PI +V NK + Sbjct: 65 KDGILHEMARQTRQAVEEADVVVFIVDGRNGLAPQDKSIADYLRKTGRPIFLVVNKAEGM 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + Y L + ISA H G +++ I + + Y P E Sbjct: 125 KYTAVASDFYELGLGDPRAISAAHGDGVTDM---INEALEVAYAGQP-----------EE 170 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 +E+ + G ++IA+VGRPNVGKSTL+N L+G +R++ G TRDS+ + Sbjct: 171 SEEDAAARG----------IKIAIVGRPNVGKSTLVNTLIGEDRVIAFDMPGTTRDSIYV 220 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + DTAG+R+ ++ E++E+ +V K++QS+ I+LLDA QD Sbjct: 221 DFERNGKRYTLIDTAGLRRRGKVFEAIEKFSVVKTLQSISDANVVILLLDARQDISDQDA 280 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 I V G A+V+ +NKWD + ++ + + + L + + IS G+ Sbjct: 281 HIAGFVVEQGRALVVGVNKWDGLDP--HVRERAKADLARKLKFLDFAKSHFISAAEKTGI 338 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWL-QKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 LM SV + ++ T L L + Q P R +L+Y Q +PP Sbjct: 339 GPLMRSVDDAYAAAMKKLPTPKLTRALIDAVEFQQPRRRGPVR-PKLRYAHQGGQNPPII 397 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +I + + E+YKRYL NR R FSL+G P+R+ F+SS NPY K Sbjct: 398 VIHGNALDAVTETYKRYLENRFRETFSLTGTPLRIEFRSSTNPYADK 444 >gi|332970913|gb|EGK09889.1| ribosome-associated GTPase EngA [Psychrobacter sp. 1501(2011)] Length = 473 Score = 251 bits (640), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 151/468 (32%), Positives = 245/468 (52%), Gaps = 34/468 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI--AD 62 +A++G PNVGKST+FN++ K + A+V + G+TRDR YG A N F ++DT GI AD Sbjct: 7 VALIGRPNVGKSTIFNQMTKTRQALVADLSGLTRDRQYGDATYNNKSFVVIDTGGIGEAD 66 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 I M+ Q+ AI+EA +I+F++D++AG+ D I L P+ +V+NK+D Sbjct: 67 DGRGGIDDYMSAQSHTAIHEADIIVFVVDARAGMIGADAEIGKMLHTLGKPVYLVANKID 126 Query: 123 TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 + E Y+L E ++A H G L ++ EN Sbjct: 127 G-VHDAAPAEFYALGLGEPYPMTASHGRGIGNLLD---------------DLTENMP--- 167 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 E++ E + L++A++GRPNVGKSTL+NR+LG +R++ G TRDS+ Sbjct: 168 ----EDVEEEDQGG-------LKLAIIGRPNVGKSTLVNRMLGEDRVVVYDMPGTTRDSI 216 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 I + + DTAG+R+ RI E +E+ +V K++Q+++ + ++DA Q Sbjct: 217 YIPYERNGKNYVLIDTAGVRRRGRIDEKVEKFSVVKTLQAIKDSNVVVAVIDAQEGIVDQ 276 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 DL ++ + G A+V+A+NKWD +SD L +R + + I + ++ IS G Sbjct: 277 DLHMLGYALDAGRAIVVAINKWDGLSDDQKDL--IRFEIERRFNFIPYVKVHFISALHGT 334 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 + +L S+ + + +++T+ L L+ NPPP R +L+Y +PP Sbjct: 335 NVGNLYPSIHKAYESSMFKVSTNRLTQILEDAVAANPPPMSGGRRIKLRYAHLGGHNPPI 394 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +I +P+SY+RYL N R F L G P+R+ F+ + NPY K Sbjct: 395 VVIHGNQTGSLPKSYQRYLENEFRKVFKLEGTPLRIEFKLNTNPYAGK 442 >gi|332969954|gb|EGK08954.1| ribosome-associated GTPase EngA [Kingella kingae ATCC 23330] Length = 489 Score = 251 bits (640), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 157/467 (33%), Positives = 236/467 (50%), Gaps = 30/467 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M TIA+VG PNVGKSTLFNRL K K A+V + PG+TRDR YG A + + +VDT G Sbjct: 1 MKPTIALVGRPNVGKSTLFNRLTKTKDALVHDLPGLTRDRHYGHAKVGSKPYLVVDTGGF 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + I +M QT A++EA ++FL+D++ G+TP D I LR+ P+ + NK Sbjct: 61 EPVVDSGILHEMAKQTLQAVDEADAVIFLVDARTGLTPQDKIIADRLRQSPRPVFLAVNK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + E Y L E IS H G ++ + + N P Sbjct: 121 GEGGNRPVLAAEFYELALGEPYVISGAHGDG-------VYYLIEDVLENFP-------DA 166 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 ++E P E K V AV+GRPNVGKSTL+N +LG R++ +G TRD Sbjct: 167 SDEEP------ENKHPV--------FAVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRD 212 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ I + N P I DTAG+R+ ++ E++E+ +V K+MQ+V +++LDA Sbjct: 213 SIHIDFERDNKPFTIIDTAGVRRRGKVDEAVEKFSVIKAMQAVEAANVAVLVLDAQQDIA 272 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 QD I G A+V+A+NKWD +SD+ + ++ + L + ++ IS Sbjct: 273 DQDATIAGFALEAGRALVIAVNKWDGISDERR--EQVKRDIARKLYFLDFAKLHFISALK 330 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 +G+D L S+ ++ T + LQ + PP +++Y Q S+P Sbjct: 331 EKGIDGLFDSIQAAYNAAFIKMPTPKITRVLQSAVERQQPPRAGLVRPKMRYAHQGGSNP 390 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 P +I + I +SY RYL R F+L G P+R+ + S+NPY Sbjct: 391 PVIVIHGNSLHAIGDSYTRYLTQTFRKAFNLQGTPLRIQYNVSENPY 437 >gi|228475961|ref|ZP_04060669.1| ribosome-associated GTPase EngA [Staphylococcus hominis SK119] gi|314936392|ref|ZP_07843739.1| ribosome-associated GTPase EngA [Staphylococcus hominis subsp. hominis C80] gi|228269784|gb|EEK11264.1| ribosome-associated GTPase EngA [Staphylococcus hominis SK119] gi|313655011|gb|EFS18756.1| ribosome-associated GTPase EngA [Staphylococcus hominis subsp. hominis C80] Length = 436 Score = 251 bits (640), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 144/456 (31%), Positives = 241/456 (52%), Gaps = 31/456 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST+FNR+V +++++V + PG+TRDR+Y FNI+DT GI G Sbjct: 6 VAIVGRPNVGKSTIFNRVVGERVSIVEDTPGVTRDRIYSSGEWLTHEFNIIDTGGIEIG- 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + Q+ Q E+AI+EA +I+F+++ + G+T D + L K P+++ NK+D Sbjct: 65 DAPFQTQIRAQAEIAIDEADVIIFMVNVREGLTQSDEMVAQLLYKSKKPVVLAVNKVDNP 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + ++ YSL F + IS H LG +L + K FK++ + Sbjct: 125 EMRSDIFDFYSLGFGDPYPISGSHGLGLGDLLDEVVKHFKEE---------------DSD 169 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P ++ +R++++GRPNVGKS+L+N +LG R++ + +G TRD+V Sbjct: 170 PYDD-------------DIIRLSIIGRPNVGKSSLVNAILGEERVIVSNVAGTTRDAVDT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 +++ + DTAGMRK ++ ES E+ +V ++++++ ++++DA +QD Sbjct: 217 EYSYDGQDYVLIDTAGMRKKGKVYESTEKYSVLRALKAIERSNVVLLVIDAEEGIIEQDK 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIY-INTISGRTGEG 363 R+ G A+V+ +NKWD V N ++ ++N Q D I +S + Sbjct: 277 RVAGYAHEEGKAMVIVVNKWDAVEKDTNTMKKF-ADDVRNQFQFLDYAPIAFVSAKERLR 335 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 L L + E ++ K R+ +S LN + NP PT R + Y TQ+ PP+F Sbjct: 336 LKTLFPYIREASENHKKRVQSSTLNEVVTDAISMNPTPTDKGRRLNVFYTTQVAIEPPTF 395 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 ++F + SYKRYL N++R F G PI + Sbjct: 396 VVFVNDVELMHFSYKRYLENQIRDAFGFEGTPIHII 431 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 49/180 (27%), Positives = 89/180 (49%), Gaps = 15/180 (8%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI- 60 I ++I+G PNVGKS+L N ++ ++ +V N G TRD + + +G + ++DTAG+ Sbjct: 175 IIRLSIIGRPNVGKSSLVNAILGEERVIVSNVAGTTRDAVDTEYSYDGQDYVLIDTAGMR 234 Query: 61 ADGKNCSIAKQMNDQTEL-AINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 GK ++ + L AI ++++L +ID++ GI D + + ++ ++IV N Sbjct: 235 KKGKVYESTEKYSVLRALKAIERSNVVLLVIDAEEGIIEQDKRVAGYAHEEGKAMVIVVN 294 Query: 120 KMDTRIAQRNFYEIYS---------LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNH 170 K D N + ++ LD+ I +SA+ L L F ++ NH Sbjct: 295 KWDAVEKDTNTMKKFADDVRNQFQFLDYAPIAFVSAKERLRLKTL----FPYIREASENH 350 >gi|239500761|ref|ZP_04660071.1| GTP-binding protein EngA [Acinetobacter baumannii AB900] Length = 469 Score = 251 bits (640), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 153/465 (32%), Positives = 252/465 (54%), Gaps = 33/465 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA++G PNVGKSTLFN++ K + A+V + G+TRDR YG A F +VDT GI + Sbjct: 5 IALIGRPNVGKSTLFNQITKSRDALVADFAGLTRDRKYGDATYQNKSFIVVDTGGIGE-S 63 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I M +Q++ AINEA +I+F++D++AG+ D I LR I +V+NK+D Sbjct: 64 EGGIDNYMAEQSKTAINEADIIIFVVDARAGLLASDEQIARELRTLGKKIYLVANKVDGV 123 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 A+ E Y L E ++++A H G ++ LE + + +ES Sbjct: 124 HAEAALVEFYKLGMGEPLQVAASHGRGVQQM----------------LEDVLQDIPEDES 167 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P+E+ G LR+A++GRPNVGKSTL+NRLLG +R++ Q G TRDS+ I Sbjct: 168 PEEHDKDTG----------LRLAIIGRPNVGKSTLVNRLLGEDRVVAFDQPGTTRDSIYI 217 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + + DTAG+R+ ++ E +E+ ++ K++Q+++ +V++DA +QDL Sbjct: 218 PFEREGRKYTLIDTAGVRRKGKVDEMIEKFSIVKTLQAMKDAHVVVVVVDAREGIVEQDL 277 Query: 305 RIVDSVFNTGHAVVLALNKWDMVS--DKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 ++ G A+V+A+NKWD +S D+ D+ + I I+ IS G Sbjct: 278 HLIGYALEAGRAMVIAINKWDNMSEYDRKQCKLDVE----RRFDFIPWARIHLISALHGT 333 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 G+ +L S+ + +++ + L L Q+ PPT+ R +++Y +PP+ Sbjct: 334 GVGELYPSIHRAYESANLKVSPAKLTQILNDATDQHQPPTVQGRRIKMRYAHMGGQNPPT 393 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 +I +K P Y+RYL N R + L G P+++ F++S+NP+ Sbjct: 394 IVIHGNKVDKTPADYRRYLENVFRKVYKLEGTPVKIEFKTSENPF 438 >gi|309805732|ref|ZP_07699772.1| ribosome biogenesis GTPase Der [Lactobacillus iners LactinV 09V1-c] gi|309807723|ref|ZP_07701658.1| ribosome biogenesis GTPase Der [Lactobacillus iners LactinV 01V1-a] gi|312875513|ref|ZP_07735516.1| ribosome biogenesis GTPase Der [Lactobacillus iners LEAF 2053A-b] gi|315653509|ref|ZP_07906430.1| ribosome-associated GTPase EngA [Lactobacillus iners ATCC 55195] gi|308164985|gb|EFO67228.1| ribosome biogenesis GTPase Der [Lactobacillus iners LactinV 09V1-c] gi|308169034|gb|EFO71117.1| ribosome biogenesis GTPase Der [Lactobacillus iners LactinV 01V1-a] gi|311089024|gb|EFQ47465.1| ribosome biogenesis GTPase Der [Lactobacillus iners LEAF 2053A-b] gi|315489200|gb|EFU78841.1| ribosome-associated GTPase EngA [Lactobacillus iners ATCC 55195] Length = 435 Score = 251 bits (640), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 151/461 (32%), Positives = 246/461 (53%), Gaps = 32/461 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKST+FNR++ ++A+V + PG+TRDR+Y A G F +VDT GI Sbjct: 6 VALVGRPNVGKSTIFNRIINSRVAIVEDQPGVTRDRIYANAQWMGKQFVLVDTGGITFED 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N I +Q+ Q E+AINEA +I+ L D +T D I L K PII+ NK D Sbjct: 66 NV-IEEQIKTQAEIAINEADVIVMLSDVTGHVTNLDETIAKILYKAKKPIILAINKADNP 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + Y+ YSL + + +S H G +L I F NN ++++ Sbjct: 125 EQRNDIYDFYSLGLGDPIPVSGSHGTGLGDLLDAIVSKFDG-----------NNTTDDDN 173 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 +R +++GRPNVGKS+++N +LG NR++ G TRD++ Sbjct: 174 ------------------NIRFSIIGRPNVGKSSIVNSILGENRVIVADMEGTTRDAIDT 215 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + I DTAG+R+ ++ E +E+ +V +S+ ++ + I+++DA++ +QD Sbjct: 216 IFEKDGQKYTIVDTAGIRRKGKVYEKVEKYSVMRSISAIEQSDVAIIVIDASVGIIEQDK 275 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIY-INTISGRTGEG 363 I + G V++A+NKWD+ S +QD K I+ Q D I +S +TG+ Sbjct: 276 HIAGYAHDAGKGVIIAVNKWDVPSKTTTSMQDF-VKVIRQEFQYLDYAPIVFVSAKTGQR 334 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 ++D++ V + + + RI +S LN L P P + + R+ Y+TQ+ PP+F Sbjct: 335 IEDIVSLVKNVKENQQRRIQSSVLNDLLLDATRITPTPLVNGKRLRIYYMTQVAVVPPTF 394 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 ++F P + SYKR+LIN++R NF+ G PI++ + K Sbjct: 395 VVFVNDPELLHFSYKRFLINQMRQNFNFEGTPIKILARKRK 435 >gi|255994066|ref|ZP_05427201.1| ribosome-associated GTPase EngA [Eubacterium saphenum ATCC 49989] gi|255993734|gb|EEU03823.1| ribosome-associated GTPase EngA [Eubacterium saphenum ATCC 49989] Length = 441 Score = 251 bits (640), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 143/458 (31%), Positives = 235/458 (51%), Gaps = 29/458 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T AI+G+PN GKST FN+L+ KK+++V + G+TRDR+YG ++DT GI Sbjct: 6 TAAIIGSPNTGKSTFFNKLIGKKLSIVHDERGVTRDRIYGYTQWRNHEILLIDTGGIETD 65 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + + Q ++AI A +I+FL+D KAG+T D I L+K I++V NK+D Sbjct: 66 SKDEMMTNIRQQADVAIELADVIIFLVDGKAGLTSGDREIAMLLKKTRKKILLVVNKIDN 125 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + ++ Y L F ++ +SA + LG ++ I ++N + + Sbjct: 126 AGIESAVFDFYELGFNDVQGVSAANMLGLGDVLDFI---------------VDNAPKAQT 170 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 + E+I L +AV+GRPN GKS+L+N L NR + G TRDS+ Sbjct: 171 TLDEDI--------------LSVAVIGRPNAGKSSLLNYLASENRAIVSEMQGTTRDSID 216 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 +K I DTAG+R+ S+I +++E+ +V +++ ++ C+ ++++DA I +QD Sbjct: 217 EVVTYKGDRYNIIDTAGIRRKSKIGDAVEKFSVIRAISAIERCDVCVLMIDANIGVSEQD 276 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 RI G +++A+NKWD + + ++ + +NL I + IS G Sbjct: 277 QRIAGLAKEAGKGIIVAVNKWDSIEKATSTMKTYERELAENLKFISYAPVVFISATEGIR 336 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 +D+LM V + K RI TS LNS L PP+ + ++ Y++Q+ + PP F Sbjct: 337 IDNLMSLVKRVAASQKKRIKTSILNSMLADAMYNKEPPSTKGKKLKIYYVSQVGTEPPLF 396 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 + + SY RYL NR+R F G PI+ F+ Sbjct: 397 AFSINDKDLMKLSYSRYLENRIRDTFEFIGSPIKFVFR 434 Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 38/126 (30%), Positives = 62/126 (49%), Gaps = 6/126 (4%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 I ++A++G PN GKS+L N L + A+V G TRD + G +NI+DTAGI Sbjct: 176 ILSVAVIGRPNAGKSSLLNYLASENRAIVSEMQGTTRDSIDEVVTYKGDRYNIIDTAGIR 235 Query: 62 DGKNCSIAKQMNDQTEL----AINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIV 117 + I + + + AI + + +ID+ G++ D I ++ II+ Sbjct: 236 --RKSKIGDAVEKFSVIRAISAIERCDVCVLMIDANIGVSEQDQRIAGLAKEAGKGIIVA 293 Query: 118 SNKMDT 123 NK D+ Sbjct: 294 VNKWDS 299 >gi|218896533|ref|YP_002444944.1| ribosome-associated GTPase EngA [Bacillus cereus G9842] gi|228900184|ref|ZP_04064416.1| GTP-binding protein engA [Bacillus thuringiensis IBL 4222] gi|228938715|ref|ZP_04101319.1| GTP-binding protein engA [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228964578|ref|ZP_04125687.1| GTP-binding protein engA [Bacillus thuringiensis serovar sotto str. T04001] gi|228971597|ref|ZP_04132220.1| GTP-binding protein engA [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978207|ref|ZP_04138584.1| GTP-binding protein engA [Bacillus thuringiensis Bt407] gi|226741129|sp|B7IP82|DER_BACC2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|218545843|gb|ACK98237.1| ribosome-associated GTPase EngA [Bacillus cereus G9842] gi|228781224|gb|EEM29425.1| GTP-binding protein engA [Bacillus thuringiensis Bt407] gi|228788120|gb|EEM36076.1| GTP-binding protein engA [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228795112|gb|EEM42609.1| GTP-binding protein engA [Bacillus thuringiensis serovar sotto str. T04001] gi|228820956|gb|EEM66977.1| GTP-binding protein engA [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228859454|gb|EEN03882.1| GTP-binding protein engA [Bacillus thuringiensis IBL 4222] gi|326939221|gb|AEA15117.1| GTP-binding protein EngA [Bacillus thuringiensis serovar chinensis CT-43] Length = 436 Score = 251 bits (640), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 147/458 (32%), Positives = 240/458 (52%), Gaps = 29/458 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKST+FNR+V +++++V + PGITRDR+Y FNI+DT GI G Sbjct: 6 IAIVGRPNVGKSTIFNRIVGERVSIVEDIPGITRDRIYSAGEWLNHEFNIIDTGGIDIGD 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + Q+ Q E+AI+EA +I+F+ + + G+T D + L + PI++ NK+D Sbjct: 66 EPFLT-QIRQQAEVAIDEADVIIFMTNGRDGVTAADEEVAKILYRSKKPIVLAVNKVDNP 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + Y+ YSL F E IS H LG +L + NH IE ++E+ Sbjct: 125 EMRSDIYDFYSLGFGEPFPISGTHGLGLGDL--------LDEAANH-FPKIEEEAYDDET 175 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 +R +++GRPNVGKS+L+N LLG R++ + +G TRD+V Sbjct: 176 -------------------IRFSLIGRPNVGKSSLVNALLGQERVIVSNIAGTTRDAVDT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 ++ + I DTAGMRK ++ ES E+ +V ++++++ + +V+LD +QD Sbjct: 217 PYSKDDQDYVIIDTAGMRKKGKVYESTEKYSVLRALRAIERSDVVLVVLDGEEGIIEQDK 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 +I ++G AV++ +NKWD V ++ + + I +S +T + Sbjct: 277 KIAGYAHDSGRAVIIVVNKWDAVKKDEKTMKAFEENIRAHFQFLDYAPIVFLSAKTKKRT 336 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 L+ + E+N+ R+ T+ LN + NP PT ++ Y TQ+ PP+F+ Sbjct: 337 QTLLPVINEVNESHSIRVQTNVLNDVIMDAVAMNPTPTHNGSRLKIFYATQVAVKPPTFV 396 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 +F + SY+R+L NRLR F G PI + ++ Sbjct: 397 VFVNDTELMHFSYERFLKNRLREAFGFVGTPIHIIARA 434 >gi|288801362|ref|ZP_06406816.1| ribosome-associated GTPase EngA [Prevotella sp. oral taxon 299 str. F0039] gi|288331745|gb|EFC70229.1| ribosome-associated GTPase EngA [Prevotella sp. oral taxon 299 str. F0039] Length = 437 Score = 251 bits (640), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 156/460 (33%), Positives = 244/460 (53%), Gaps = 34/460 (7%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +AIVG PNVGKSTLFNRL K + A+V + G TRDR YG+ NG F+IVDT G Sbjct: 1 MANLVAIVGRPNVGKSTLFNRLTKTRSAIVSDTAGTTRDRQYGKVDWNGREFSIVDTGGW 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + Q +A EA+L+LF++D + G+T +D + LRK +PII+V NK Sbjct: 61 VVNSEDIFEDAIRRQVLIATEEANLVLFVVDVQTGLTDWDEDVAQILRKSKVPIILVVNK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D Q + E YSL E IS+ GT +L L+ + NN + Sbjct: 121 VDKNEQQYDAAEFYSLGLGEPFCISSSTGSGTGDL----------------LDEVINNLK 164 Query: 181 NE--ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 E ES ++ I R AVVGRPN GKS++IN +G +R + +G T Sbjct: 165 AEVDESLEDGIP--------------RFAVVGRPNAGKSSIINAFMGEDRNIVTEIAGTT 210 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RDS+ ++ + DTAG+R+ +++TE LE +V +S++++ + I+++DAT Sbjct: 211 RDSIYTRFDKFGFDFYLVDTAGIRRKNKVTEDLEFYSVMRSIRAIENSDVCILMIDATRG 270 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDK-LNLLQDLRTKAIKNLPQIGDIYINTIS 357 E QD+ I + ++V+ +NKWD+V DK ++ T K + D I S Sbjct: 271 IETQDMNIFQLIQRNNKSLVVVVNKWDLVPDKDQKVITTFETAIRKRMAPFTDFPIIFAS 330 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 T + + ++ + ++ K + TS LN + PPP++ +Y ++KY TQ+ Sbjct: 331 ALTKQRIFKVLETAKQVYLNRKAHVGTSKLNEVMLPLIEAFPPPSVKGKYIKIKYCTQLP 390 Query: 418 SSP-PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 ++ PSF+ + P I E YKR+L N++R N++++G PI Sbjct: 391 NTQIPSFVFYANLPQYIKEPYKRFLENKIRDNWTMTGSPI 430 >gi|257791089|ref|YP_003181695.1| small GTP-binding protein [Eggerthella lenta DSM 2243] gi|317488189|ref|ZP_07946760.1| ribosome-associated GTPase EngA [Eggerthella sp. 1_3_56FAA] gi|325830789|ref|ZP_08164173.1| ribosome biogenesis GTPase Der [Eggerthella sp. HGA1] gi|257474986|gb|ACV55306.1| small GTP-binding protein [Eggerthella lenta DSM 2243] gi|316912694|gb|EFV34232.1| ribosome-associated GTPase EngA [Eggerthella sp. 1_3_56FAA] gi|325487196|gb|EGC89639.1| ribosome biogenesis GTPase Der [Eggerthella sp. HGA1] Length = 438 Score = 251 bits (640), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 145/457 (31%), Positives = 233/457 (50%), Gaps = 27/457 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKST NR+ + A+V G+TRDR Y +A NGV F ++DT GI G Sbjct: 6 VAVVGRPNVGKSTFVNRIAQADEAIVHEMRGVTRDRSYHEADWNGVDFKLIDTGGIEMGD 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + + +Q NEA +ILFL+D K G+ D A+ LRK + P+ +V NK+DT Sbjct: 66 DDAFQGSIRNQALAGANEADVILFLVDGKTGVNADDEAVARILRKTSKPVFLVVNKLDTP 125 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 +E Y L + +SA H GT +L L+ + N + + Sbjct: 126 NRMDEVWEFYQLGLGDPWPVSAMHGHGTGDL----------------LDEVVNELKKVDL 169 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P + +G + +A++GRPN GKS+L N+L +R + +G TRD++ Sbjct: 170 PADADEEDG----------INVAIIGRPNAGKSSLTNKLTANDRSIVSDVAGTTRDAIDT 219 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 I DTAG+R+ S+I E +E ++M+++ ++++D+T+ QD Sbjct: 220 HIVHDGQRYTIVDTAGLRRKSQIDEDVEYYGFVRAMRAIDRANVALLVIDSTLGLTDQDQ 279 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 R+ G A+V+ LNKWD++ ++R + L +G + IS TG+ + Sbjct: 280 RVAGFAAERGCAMVIVLNKWDLIEGP-EAKAEIRERIADRLTFVGYAPVIAISALTGKKV 338 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 D + +V + + I T+ LN+WL + + R+KY+TQ + PP F Sbjct: 339 DRIWDAVNAAYENYSQTIPTNRLNTWLAGIREFGHTVSKGKAVLRMKYVTQTATCPPQFT 398 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 F P+ + ++++RYL NRLR NF L G PIR+ F+ Sbjct: 399 FFANRPDLVDDNFERYLENRLRENFELVGTPIRIKFK 435 >gi|309807087|ref|ZP_07701066.1| ribosome biogenesis GTPase Der [Lactobacillus iners LactinV 03V1-b] gi|308166517|gb|EFO68717.1| ribosome biogenesis GTPase Der [Lactobacillus iners LactinV 03V1-b] Length = 431 Score = 251 bits (640), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 152/456 (33%), Positives = 241/456 (52%), Gaps = 32/456 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKST+FNR++ ++A+V + PG+TRDR+Y A G F +VDT GI Sbjct: 6 VALVGRPNVGKSTIFNRIINSRVAIVEDQPGVTRDRIYANAQWMGKQFVLVDTGGITFED 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N I +Q+ Q E+AINEA +I+ L D +T D I L K PII+ NK D Sbjct: 66 NV-IEEQIKTQAEIAINEADVIVLLSDVTGHVTNLDETIAKILYKAKKPIILAINKADNP 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + Y+ YSL + + +S H G +L I F N N Sbjct: 125 EQRNDIYDFYSLGLGDPIPVSGSHGTGLGDLLDAIVSKF--------------NGNNTTD 170 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 NI R +++GRPNVGKS+++N +LG NR++ G TRD++ Sbjct: 171 DDNNI---------------RFSIIGRPNVGKSSIVNSILGENRVIVADMEGTTRDAIDT 215 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + I DTAG+R+ ++ E +E+ +V +S+ ++ + I+++DA++ +QD Sbjct: 216 IFEKDGQKYTIVDTAGIRRKGKVYEKVEKYSVMRSISAIEQSDVAIIVIDASVGIIEQDK 275 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIY-INTISGRTGEG 363 I + G V++A+NKWD+ S +QD K I+ Q D I +S +TG+ Sbjct: 276 HIAGYAHDAGKGVIIAVNKWDVPSKTTTSMQDF-VKVIRQEFQYLDYAPIVFVSAKTGQR 334 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 ++D++ V + + + RI +S LN L P P + + R+ Y+TQ+ PP+F Sbjct: 335 IEDIVSLVKNVKENQQRRIQSSVLNDLLLDATRITPTPLVNGKRLRIYYMTQVAVVPPTF 394 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 ++F P + SYKR+LIN++R NF+ G PI++ Sbjct: 395 VVFVNDPELLHFSYKRFLINQMRQNFNFEGTPIKIL 430 >gi|262196911|ref|YP_003268120.1| ribosome-associated GTPase EngA [Haliangium ochraceum DSM 14365] gi|262080258|gb|ACY16227.1| ribosome-associated GTPase EngA [Haliangium ochraceum DSM 14365] Length = 518 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 144/498 (28%), Positives = 251/498 (50%), Gaps = 40/498 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI-ADG 63 IAIVG PNVGKSTL+NRLV + A+V + PG+TRDR YG G +VDT G+ + Sbjct: 6 IAIVGRPNVGKSTLYNRLVGGRPALVHDTPGLTRDRRYGAFSYMGHRLRLVDTGGLDPEA 65 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 I ++ Q + A+ EA+ +LF++D+ AGITP DH + S LRK + P+++ +NK+D Sbjct: 66 AKEVIGAGIHRQADAALQEANAVLFVLDATAGITPLDHEVASKLRKLDKPLLVCANKVDH 125 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE- 182 + E+++L ++ +SA H G ++ + P P+E + E Sbjct: 126 AKREVLTAELFALGLGDVYPVSATHGRGVDDMLEALVATLGLP-PVAPVEDEPEDDEGEE 184 Query: 183 ------------------------------------ESPKENITSEGKSSVKNISKPLRI 206 + P E + + V + PLR+ Sbjct: 185 GQGRRRRRRRSAATAEAERAEQAARGEGEGTGEEDIDRPSEEEVARARRPVPGVDVPLRV 244 Query: 207 AVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSR 266 A++G+PN GKS+L+NRL+G R L Q G T D V + + + DTAG+R+ +R Sbjct: 245 AMLGKPNAGKSSLVNRLVGSERSLVHHQPGTTMDPVDTPFEFAGRSYVLVDTAGIRRRAR 304 Query: 267 ITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 + E+ V ++ + + ++++D + +QD R+ V ++G +V+A+NK D+ Sbjct: 305 VEAETEKIAVSMAISQIERADIVVLVIDGKLGPSEQDARLAGLVEDSGRGLVVAVNKVDL 364 Query: 327 VSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSY 386 +S + +++ L + + +S G+G+ DL+ +V + R+ T+ Sbjct: 365 LS-GVGAGSKVKSALSDTLHFLSYAPMVLVSALRGDGVADLLSTVDRVALEHAKRVPTAE 423 Query: 387 LNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLR 446 LN + + +PPP R R+ Y+TQ PP+FL++ P+ + +Y+RYL+N+LR Sbjct: 424 LNRFFAEVCETHPPPLYQRREVRIHYLTQGGVRPPTFLLWANRPDGVAPAYRRYLVNQLR 483 Query: 447 INFSLSGIPIRMCFQSSK 464 + G P+R+ ++ + Sbjct: 484 ARYGFEGSPVRLVVKAKQ 501 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 49/173 (28%), Positives = 88/173 (50%), Gaps = 11/173 (6%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 ++KPL IA+VGRPNVGKSTL NRL+G L G+TRD ++++ H + + DT Sbjct: 1 MTKPL-IAIVGRPNVGKSTLYNRLVGGRPALVHDTPGLTRDRRYGAFSYMGHRLRLVDTG 59 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+ P E + +++ +++ + +LDAT D + + +++ Sbjct: 60 GL-DPEAAKEVIGAGIHRQADAALQEANAVLFVLDATAGITPLDHEVASKLRKLDKPLLV 118 Query: 320 ALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVL 372 NK D +++ T + L +GD+Y +S G G+DD++ +++ Sbjct: 119 CANKVDHAK------REVLTAELFAL-GLGDVY--PVSATHGRGVDDMLEALV 162 >gi|257093699|ref|YP_003167340.1| GTP-binding protein EngA [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046223|gb|ACV35411.1| small GTP-binding protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 492 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 154/473 (32%), Positives = 242/473 (51%), Gaps = 36/473 (7%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +I +VG PNVGKSTLFNRL + + A+V + PG+TRDR YG + + ++DT G Sbjct: 1 MKTSIVLVGRPNVGKSTLFNRLTRTRDALVADLPGLTRDRHYGHGKLGSKPYLVIDTGGF 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 I M QTE AI+EA +++ ++D ++G+T D I + LRK + P+++ NK Sbjct: 61 EPLAKDGIMYHMARQTEQAIDEADVVILVVDGRSGLTALDKEIANRLRKVDRPVLVAVNK 120 Query: 121 ---MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 M + +F+E L E + ISA H G L + Sbjct: 121 SEGMSVGVVVSDFHE---LGLGEPLAISAAHGEGVRALIDLAL----------------- 160 Query: 178 NKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGI 237 E E + SE +S V +++A+VGRPNVGKSTLIN LLG +R++ Q G Sbjct: 161 -----EPCAEAVESEPESDV------VKVAIVGRPNVGKSTLINALLGEDRVIAFDQPGT 209 Query: 238 TRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATI 297 TRD++ + + + DTAG+R+ R+ E++E+ +V K++Q+V + I++LDA Sbjct: 210 TRDAIEVDFERGGKKYTLIDTAGLRRRGRVFETIEKFSVIKTLQAVEDAQVVILVLDARQ 269 Query: 298 PFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTIS 357 +QD I + +G A+V+A+NKWD + + + ++ L I + +S Sbjct: 270 DIAEQDAHIAAFIRESGRALVVAVNKWDGLDSYVR--EQIKGALEGQLGFIDFARFHYVS 327 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 G+GL+ L SV + + T L L + + PP +L+Y Q Sbjct: 328 ALRGQGLEPLFRSVDAAYRAAIADLPTPQLTRTLSEAVARQAPPRSGLFRPKLRYAHQGG 387 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I +K+PESY+RYL + R F L G P+R+ F S NP+ + Sbjct: 388 RNPPLIVIHGNALDKVPESYRRYLEHTFREVFKLQGTPLRIQFNVSSNPFADR 440 >gi|256832504|ref|YP_003161231.1| small GTP-binding protein [Jonesia denitrificans DSM 20603] gi|256686035|gb|ACV08928.1| small GTP-binding protein [Jonesia denitrificans DSM 20603] Length = 490 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 155/460 (33%), Positives = 240/460 (52%), Gaps = 37/460 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI-AD- 62 +AIVG PNVGKSTL NR++ ++ AVV + PG+TRDR+ A G F +VDT G AD Sbjct: 57 LAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYPAEWAGRDFMLVDTGGWEADV 116 Query: 63 -GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 G + S+A+Q E+AIN A ++F++DS G T D + LR+ P+++ +NK+ Sbjct: 117 LGIDASVAQQ----AEVAINLADAVIFVVDSTVGATATDERVVRLLRQSGKPVVLCANKV 172 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D+ A+ + ++SL E +SA H GT +L K + + E+ Sbjct: 173 DSFKAEADATALWSLGLGEPYPVSALHGRGTGDLLDAAMKALPR--------ISEHGTVR 224 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 + P+ R+A+VGRPNVGKS+L+N++ NR++ +G TRD Sbjct: 225 PDGPR------------------RVALVGRPNVGKSSLLNKVAHENRVVVDDTAGTTRDP 266 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 V K P DTAG+R+ + + + +++ ++ E ++LLDA+ + Sbjct: 267 VDELIELKGRPWIFVDTAGIRRRVHMMKGADYYASLRTVAAIEKAEVAVILLDASTTVSE 326 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTG 361 QD RI+ SV ++G AVV+A NKWD+V + D + ++L QI +S RTG Sbjct: 327 QDQRIISSVVDSGRAVVVAFNKWDLVDEDRRRFLDREIE--RDLGQIQWAPRVNVSARTG 384 Query: 362 EGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 LD L+ ++ W TRI T LNS+L + NP P + R+ + TQ + PP Sbjct: 385 WHLDKLVPALDRALTSWDTRIPTGRLNSFLGELVSGNPHPVRGGKQPRILFATQASTRPP 444 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 F++F T I Y+R++ RLR F G PI + + Sbjct: 445 RFVLFAT--GFIEPGYRRFIERRLREEFGFEGTPIEISVR 482 >gi|160946385|ref|ZP_02093594.1| hypothetical protein PEPMIC_00345 [Parvimonas micra ATCC 33270] gi|158447501|gb|EDP24496.1| hypothetical protein PEPMIC_00345 [Parvimonas micra ATCC 33270] Length = 441 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 154/458 (33%), Positives = 245/458 (53%), Gaps = 40/458 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + +VG PNVGKSTLFN+L+ K++A+ + PG+TRDRLY A F + DT G+ Sbjct: 6 VCVVGRPNVGKSTLFNKLINKRIAITEDTPGVTRDRLYQDAEWQNKHFILCDTGGLEPNS 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + I +++ Q ++A+ A +ILF++D K+G+ D I+++LR+ P+++ NK+DT Sbjct: 66 DDIILQKIKAQADVAMENADVILFVVDGKSGLMDEDREISNYLRRTKKPVVLAVNKVDTH 125 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 YE Y L F+ + ISA G +L I K F Sbjct: 126 KMPAEVYEFYELGFENLNIISATQGFGLGDLLDEIIKEF--------------------- 164 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P+ T E K IA++G+PNVGKS+L+NR+LG R++ +G TRDS+ Sbjct: 165 PENKYTGEEDEVTK-------IALIGKPNVGKSSLMNRILGEERMIVSDIAGTTRDSIDS 217 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 DTAG+R+ ITE+LE+ +V +++ +V + I+L+DAT +QD Sbjct: 218 RVEIDGKTYIFTDTAGLRRKRNITENLERYSVVRTLNAVERSDIAILLIDATEGVTEQDT 277 Query: 305 RIVDSVFNTGHAVVLALNKWDM-VSDKLN---LLQDLRTKAIKNLPQIGDIYINTISGRT 360 +++ A+++A+NKWD+ V D D+RTK + +P ++ IS +T Sbjct: 278 KVIGFAKEQNKALIIAVNKWDLIVKDNKTYKAFEDDIRTK-LSFVPYAQLVF---ISVKT 333 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLK--YITQIQS 418 G+ +D L ++ ++ + TRI+T LN + + N PPT ++ RLK Y +Q+ Sbjct: 334 GQRIDKLFEAIKIADENYSTRISTGILNDIINDAVVHNSPPT--DKGQRLKIFYASQVSV 391 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 PP F+IF + SY RYL N++R NFS + PI Sbjct: 392 RPPKFVIFVNKVELMHFSYLRYLENQIRKNFSFTSSPI 429 >gi|256545124|ref|ZP_05472490.1| ribosome-associated GTPase EngA [Anaerococcus vaginalis ATCC 51170] gi|256399165|gb|EEU12776.1| ribosome-associated GTPase EngA [Anaerococcus vaginalis ATCC 51170] Length = 442 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 146/462 (31%), Positives = 253/462 (54%), Gaps = 33/462 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + +VG NVGKSTLFN+LV K+ A+ + G+TRDR+Y + G F + DT G+ Sbjct: 10 VTLVGRTNVGKSTLFNKLVGKRKAITEDVNGVTRDRVYDKVEWIGHEFILADTGGLDISN 69 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +++ Q E A+ E+ LILF++D + GI P+D+ I +RK N +I+V+NK+D Sbjct: 70 KELMNQEIKSQVEKALLESDLILFVVDGREGINPHDYEIADEIRKYNKKVIVVANKIDGA 129 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + Y+ Y F +++ SAE G+ L ++ KI + I+ +K + + Sbjct: 130 NIPDHIYDFYQFGFDDLISTSAE---GSKNLGDLLDKI---------VSFIDFSKFDTDL 177 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 RIA++G+PN GKS+L+N LL R++ +G TRD++ Sbjct: 178 D-----------------ATRIAIIGKPNAGKSSLVNHLLNEERMIVTDIAGTTRDAIDT 220 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 W +K++ + DTAG+R+ +++++++E +++ +V + E + L+DAT+ +QD Sbjct: 221 YWQYKDNNYVLIDTAGLRRKNKVSDNIEYYANQRTFDAVDSSEICLFLIDATVGVTEQDT 280 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIY--INTISGRTGE 362 +I N A+++A+NKWD V + N ++++ K I+N +Y I IS G+ Sbjct: 281 KIAGYAHNQKKAIIIAVNKWDKVEKETNTMKNME-KEIRNKLSFA-LYAPIIFISVLKGQ 338 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 + DL+ + +N + TRI T LN+ LQ + PP + ++ YI+Q+Q++PP Sbjct: 339 RITDLLNLIEIVNSNYHTRIKTGVLNTILQDAIMMTAPPQDKGKRLKIFYISQVQTAPPK 398 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 FL+ + SY+RYL N++R N+SL G+P + K Sbjct: 399 FLLHVNDKELMHFSYQRYLENQIRQNYSLQGVPFTFEIRERK 440 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 36/129 (27%), Positives = 63/129 (48%), Gaps = 2/129 (1%) Query: 197 VKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIF 256 ++NI + +VGR NVGKSTL N+L+G + +T +G+TRD V W H + Sbjct: 1 MENIMNAPIVTLVGRTNVGKSTLFNKLVGKRKAITEDVNGVTRDRVYDKVEWIGHEFILA 60 Query: 257 DTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHA 316 DT G+ ++ E + Q+ + +++ + + ++D D I D + Sbjct: 61 DTGGLDISNK--ELMNQEIKSQVEKALLESDLILFVVDGREGINPHDYEIADEIRKYNKK 118 Query: 317 VVLALNKWD 325 V++ NK D Sbjct: 119 VIVVANKID 127 >gi|311745511|ref|ZP_07719296.1| ribosome-associated GTPase EngA [Algoriphagus sp. PR1] gi|126578066|gb|EAZ82286.1| ribosome-associated GTPase EngA [Algoriphagus sp. PR1] Length = 437 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 155/468 (33%), Positives = 247/468 (52%), Gaps = 38/468 (8%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +AIVG PNVGKSTLFNRLV+++ A+ N G+TRDR YG A G F+++DT G Sbjct: 1 MANIVAIVGRPNVGKSTLFNRLVEERKAIEDNMSGVTRDRHYGHAQWTGKFFSVIDTGGY 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 G + ++ Q +LA+ EA +ILF++D G+T D + LR PI++V+NK Sbjct: 61 VTGSDDVYEAEIRKQVKLAVEEADVILFVVDCHDGLTDLDTEFANELRGSEKPILVVANK 120 Query: 121 MDTRIAQRNFYEIYSL---DFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 D + E YSL DF E+ I+A GT +L + + E Sbjct: 121 ADNQEQSFMSAEFYSLGISDF-EVFPIAAVSGSGTGDLLDKVVEQ---------FEEEGE 170 Query: 178 NKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGI 237 +E +PK I+++GRPNVGKS+ +N LLG R + +++G Sbjct: 171 EDPDEGTPK-------------------ISILGRPNVGKSSFLNALLGKERSIVTNEAGT 211 Query: 238 TRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATI 297 TRD++ + I DTAG+RK +++ E +E +V +S++++ + IV++DA+ Sbjct: 212 TRDAIHTRYKLYGQDFIITDTAGIRKKAKVKEDVEFYSVMRSLRTLEESDVIIVMVDASR 271 Query: 298 PFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQ---IGDIYIN 354 E QD+ ++ +V+ +NKWD++ + ++ + ++ L + I I+ + Sbjct: 272 GLESQDINLISLGIKNNKGIVIMVNKWDLIEKDHKTMNKIKEEMMERLGENKWIPIIFTS 331 Query: 355 TISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYIT 414 ++ + +L V V E NK K I TS LN LQ+ + PPP +Y ++KY+T Sbjct: 332 VLTKQRIFQAIELAVKVYE-NKTRK--IQTSKLNDVLQQEMERYPPPAWKGKYIKIKYVT 388 Query: 415 QIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 Q+ + P F FC P I Y R+L NRLR NF G+PI++ ++S Sbjct: 389 QLPTKNPIFAFFCNLPQYIKPPYTRFLENRLRENFEFDGVPIKIIYKS 436 >gi|227513321|ref|ZP_03943370.1| GTP-binding protein EngA [Lactobacillus buchneri ATCC 11577] gi|227083194|gb|EEI18506.1| GTP-binding protein EngA [Lactobacillus buchneri ATCC 11577] Length = 435 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 137/461 (29%), Positives = 242/461 (52%), Gaps = 30/461 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+A +G PNVGKST+FNR+ ++++V + PG+TRDR+Y A F ++DT GI Sbjct: 5 TVAFIGRPNVGKSTIFNRIAGDRISIVEDTPGVTRDRIYTHAEWLANEFAMIDTGGIQ-I 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + Q+ +Q E+AI EA +I+F++ +K G+T D + L + + P+++ NK D Sbjct: 64 SDAPFNTQIKNQAEIAIEEADVIVFIVSAKEGLTSDDEQVAKILYRSDKPVVLAVNKADN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 A+ + Y+ Y+L F + + IS H G +L I + F ++ N P Sbjct: 124 PDAREDIYDFYALGFGDPMPISGVHGTGIGDLLDKIVEKFPKETGNVP------------ 171 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 + +R +++GRPNVGKS+L+N +LG NR++ +G TRD++ Sbjct: 172 -----------------NDDIRFSIIGRPNVGKSSLVNAILGENRVIVSDVAGTTRDAID 214 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + N + DTAG+RK ++ E+ E+ +V ++M+++ + + +++A +QD Sbjct: 215 TRFEADNIKFTMVDTAGIRKRGKVYENTERYSVMRAMKAIDQSDVILFVINAEEGIREQD 274 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 ++ G A++ +NKWD + + QD T + I +S +T + Sbjct: 275 KKVAGYAHEAGKAIITVVNKWDTLKKTNHTQQDFETLIRNEFQYMAYSPIIFVSAKTKQR 334 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 ++ L + + + R+ +S LN + +P PT+ + R+ Y TQ+ S PP+F Sbjct: 335 IEQLPALIKRVYDNHEKRVQSSALNDVIMDAVAVHPTPTVNGKRLRIYYATQVVSGPPTF 394 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 ++F P+ + SY R+L N++R NF SG PIR+ +S K Sbjct: 395 VVFVNNPDLMHFSYVRFLENQIRDNFDFSGTPIRIIKRSRK 435 >gi|58337266|ref|YP_193851.1| GTP-binding protein EngA [Lactobacillus acidophilus NCFM] gi|81311473|sp|Q5FKF4|DER_LACAC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|58254583|gb|AAV42820.1| phosphoglycerate dehydrogenase [Lactobacillus acidophilus NCFM] Length = 435 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 141/460 (30%), Positives = 243/460 (52%), Gaps = 30/460 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNR++ +++A+V + PG+TRDR Y QA G F+++DT GI + Sbjct: 6 VAIVGQPNVGKSTLFNRIINQRLAIVEDKPGVTRDRNYAQAEWMGHKFDLIDTGGIT-WE 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I ++ Q E+AI EA +I+ L + +T D I L + P+I+ NK D Sbjct: 65 GGKIEDEIRAQAEIAIEEADVIVMLTNVVNHVTDLDERIARLLYRTKKPVILAVNKADNP 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + Y+ YSL + + +S+ H G +L I F P E ++S Sbjct: 125 EQRNDIYDFYSLGLGDPIPVSSSHGTGIGDLLDEIVNDF-------PAE--------KDS 169 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 +++ S +++GRPNVGKS+L+N+LLG +R++ ++ G TRD+V Sbjct: 170 EADDVIS--------------FSMIGRPNVGKSSLVNKLLGEDRVIVANEEGTTRDAVDT 215 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + ++ DTAG+R+ ++ E E+ +V ++M ++ + +++LDA+ +QD Sbjct: 216 PFTKDGIKFKVVDTAGIRRRGKVYEKTEKYSVLRAMSAIERSDVVLLVLDASTGIREQDK 275 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 + G +++ +NKWD+ ++ + + I +S +TG+ + Sbjct: 276 HVAGYAHEAGRGIIIVVNKWDLPEKNSTSAKEFEREIRSEFQYLDYAPILFVSAKTGQRI 335 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 D + V E+ RI +S LN L + P P I + R+ Y+TQ+ ++PP+F+ Sbjct: 336 DQIPSMVKEVYDNQNQRIQSSVLNDLLLEASKLVPTPMIKGKRLRVYYMTQVSTNPPTFV 395 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 +F P + SY+R+LIN+LR NF +G PI++ + K Sbjct: 396 VFVNDPELMHFSYERFLINQLRQNFDFTGTPIKILPRKRK 435 Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 48/181 (26%), Positives = 89/181 (49%), Gaps = 21/181 (11%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI- 60 + + +++G PNVGKS+L N+L+ + +V N G TRD + +G+ F +VDTAGI Sbjct: 174 VISFSMIGRPNVGKSSLVNKLLGEDRVIVANEEGTTRDAVDTPFTKDGIKFKVVDTAGIR 233 Query: 61 ------ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPI 114 + S+ + M+ AI + ++L ++D+ GI D + + + I Sbjct: 234 RRGKVYEKTEKYSVLRAMS-----AIERSDVVLLVLDASTGIREQDKHVAGYAHEAGRGI 288 Query: 115 IIVSNKMD----TRIAQRNFY-----EIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQ 165 IIV NK D + + F E LD+ I+ +SA+ ++ S++ +++ Sbjct: 289 IIVVNKWDLPEKNSTSAKEFEREIRSEFQYLDYAPILFVSAKTGQRIDQIPSMVKEVYDN 348 Query: 166 K 166 + Sbjct: 349 Q 349 >gi|289522946|ref|ZP_06439800.1| ribosome-associated GTPase EngA [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503489|gb|EFD24653.1| ribosome-associated GTPase EngA [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 443 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 150/463 (32%), Positives = 253/463 (54%), Gaps = 31/463 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 +AI+G NVGKSTLFNRL++K+MA+V + PG+TRDRLY Q G F +VDT G + Sbjct: 7 VVAIIGRANVGKSTLFNRLIQKRMAIVDDIPGVTRDRLYAQVEWAGKSFYLVDTGGFPN- 65 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 ++ + + Q + AI EA +I+F++D + GI P D I LR+ N +I+ NK+D Sbjct: 66 EDEPLFDLVGKQIDRAIEEASVIIFVVDGREGILPLDFRIAEILRRSNRRVIVAVNKIDE 125 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + YE ++L F++++ +SAEH+ +L L+ + + +E+ Sbjct: 126 PMHEPLLYEAFALGFEDVIGVSAEHNRNIPDL----------------LDKVVSYIDSED 169 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 S +E+ K ++I++VGRPNVGKS++ N L+G R + + G TRD + Sbjct: 170 SFQED------------GKTIKISIVGRPNVGKSSIFNSLIGEERAIVSNLPGTTRDPID 217 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 ++ + DTAG+RK SR+ + +E ++ ++ +++ + +++LD T QD Sbjct: 218 TEITFEGKKYLLIDTAGLRKKSRLKDDIEFYSLLRAERAIDRSDVVLLVLDVTELVTDQD 277 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKN-LPQIGDIYINTISGRTGE 362 RI G +V+A+NKWD++ + L D K +K+ L I D I TIS + Sbjct: 278 KRIAGIALEKGKGIVVAINKWDLLPEGQPKLGDNIIKDVKDQLYFINDAPIVTISALSKR 337 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQK-TQLQNPPPTIFNRYNRLKYITQIQSSPP 421 L + E+ W+TRI+TS LN+ ++ Q P R+ + Y+TQ+ ++PP Sbjct: 338 NLFKIFNVCGEVYARWQTRISTSNLNNIIRDIISFQRLPSDGKGRFLNIFYVTQVGTAPP 397 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 SFL F N + + ++R +IN L G+PIR+ +++ + Sbjct: 398 SFLFFVNDKNLVDKPFERKVINELVKVGDFKGVPIRVFWKNRR 440 >gi|228907236|ref|ZP_04071096.1| GTP-binding protein engA [Bacillus thuringiensis IBL 200] gi|228852376|gb|EEM97170.1| GTP-binding protein engA [Bacillus thuringiensis IBL 200] Length = 436 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 147/458 (32%), Positives = 240/458 (52%), Gaps = 29/458 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKST+FNR+V +++++V + PGITRDR+Y FNI+DT GI G Sbjct: 6 IAIVGRPNVGKSTIFNRIVGERVSIVEDIPGITRDRIYSAGEWLNHEFNIIDTGGIDIGD 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + Q+ Q E+AI+EA +I+F+ + + G+T D + L + PI++ NK+D Sbjct: 66 EPFLT-QIRQQAEVAIDEADVIIFMTNGRDGVTAADEEVAKILYRSKKPIVLAVNKVDNP 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + Y+ YSL F E IS H LG +L + NH IE ++E+ Sbjct: 125 EMRSDIYDFYSLGFGEPFPISGTHGLGLGDL--------LDEAANH-FPKIEEEAYDDET 175 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 +R +++GRPNVGKS+L+N LLG R++ + +G TRD+V Sbjct: 176 -------------------IRFSLIGRPNVGKSSLVNALLGQERVIVSNIAGTTRDAVDT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 ++ + I DTAGMRK ++ ES E+ +V ++++++ + +V+LD +QD Sbjct: 217 PYSKDDQDYVIIDTAGMRKKGKVYESTEKYSVLRALRAIERSDVVLVVLDGEEGIIEQDK 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 +I ++G AV++ +NKWD V ++ + + I +S +T + Sbjct: 277 KIAGYAHDSGRAVIIVVNKWDAVKKDEKTMKAFEENIRAHFQFLDYAPIIFLSAKTKKRT 336 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 L+ + E+N+ R+ T+ LN + NP PT ++ Y TQ+ PP+F+ Sbjct: 337 QTLLPVINEVNESHSIRVQTNVLNDVIMDAVAMNPTPTHNGSRLKIFYATQVAVKPPTFV 396 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 +F + SY+R+L NRLR F G PI + ++ Sbjct: 397 VFVNDTELMHFSYERFLKNRLREAFGFVGTPIHIIARA 434 >gi|163786085|ref|ZP_02180533.1| GTP-binding protein EngA [Flavobacteriales bacterium ALC-1] gi|159877945|gb|EDP72001.1| GTP-binding protein EngA [Flavobacteriales bacterium ALC-1] Length = 434 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 144/452 (31%), Positives = 230/452 (50%), Gaps = 29/452 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKST FNRL+K++ A+V G+TRDR YG+ NG F+++DT G G Sbjct: 5 VAVVGRPNVGKSTFFNRLIKRREAIVDAVSGVTRDRHYGKTDWNGKEFSLIDTGGYVVGS 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +++ Q ELAI+EA I+F++D + GIT D + + LRK P+ +V NK+D Sbjct: 65 DDIFEAEIDKQVELAIDEADAIIFMVDVETGITGMDEDVANLLRKVKKPVFLVVNKVDNN 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + E YSL + I++ + GT +L + +K E+ Sbjct: 125 KRAEDAVEFYSLGLGDYFTIASINGSGTGDLLDAVVDALPEKEEVEEEEL---------- 174 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 R AVVGRPN GKS+ IN L+G R + +G TRDS+ Sbjct: 175 -------------------PRFAVVGRPNAGKSSFINALIGEERYIVTDIAGTTRDSIDT 215 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 +N + DTAG+R+ S++ E LE +V +S++++ C+ +++LDAT F+ Q Sbjct: 216 KYNRFGFEFNLVDTAGIRRKSKVKEDLEFYSVMRSVRAIEHCDVCLLVLDATRGFDGQVQ 275 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 I +V+ +NKWD++ + + + + D+ I IS + + Sbjct: 276 NIFWLAERNRKGIVILVNKWDLIEKETKTAKAFEKHIREQIAPFTDVPIVFISVLNKQRI 335 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 + + +++ K RI TS LN L PPP ++ ++KYI Q+ + P F Sbjct: 336 FKAIETAVDVYKNRAKRIKTSVLNDTLLPIIEHQPPPAYKGKFVKIKYIMQLPTPQPQFA 395 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 FC P + E YKR+L N+LR +F +G+P+ Sbjct: 396 FFCNLPQYVKEPYKRFLENQLRNHFDFNGVPV 427 >gi|312110436|ref|YP_003988752.1| ribosome-associated GTPase EngA [Geobacillus sp. Y4.1MC1] gi|311215537|gb|ADP74141.1| ribosome-associated GTPase EngA [Geobacillus sp. Y4.1MC1] Length = 436 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 142/461 (30%), Positives = 242/461 (52%), Gaps = 29/461 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 +AIVG PNVGKST+FNR+V +++++V + PG+TRDR+Y A F ++DT GI G Sbjct: 5 VVAIVGRPNVGKSTIFNRIVGERISIVEDVPGVTRDRIYSSAEWLNHKFYLIDTGGIDIG 64 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + Q+ Q E+AI+EA +I+F+ + + G+T D + L + N P+++ NK+D Sbjct: 65 DEPLLV-QIRQQAEIAIDEADVIIFMTNGRDGVTAADEEVAKILHRSNKPVVLAVNKIDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + Y+ Y+L F + IS H G +L + + F KR +E Sbjct: 124 PEMRDLIYDFYALGFGDPYPISGAHGTGLGDLLDAVARHFP--------------KRGQE 169 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 +E++ ++ ++GRPNVGKS+L+N +LG R++ +G TRD+V Sbjct: 170 EYEEDV--------------IKFCLIGRPNVGKSSLVNAILGEERVIVSDIAGTTRDAVD 215 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 ++ + I DTAGMRK +I E+ E+ +V ++++++ + +V+L+A +QD Sbjct: 216 TTFVREGQEYVIIDTAGMRKRGKIYENTEKYSVLRALKAIERSDVVLVVLNAEEGIIEQD 275 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 +I G V++ +NKWD + L + K + P + I +S +T + Sbjct: 276 KKIAGYAHEAGRGVIIVVNKWDAIEKDDKTLIEFERKIRNHFPFLDYAPIIFVSAKTKQR 335 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 L L+ V +++ R+ T+ LN + NP PT R ++ Y+TQ+ PP+F Sbjct: 336 LHKLLPLVRMVSENHAMRVQTNVLNEVIMDAVAMNPTPTHNGRRLKIYYMTQVAVKPPTF 395 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 + F P + SY+R+L NR+R F G PI++ + K Sbjct: 396 VAFVNDPELMHFSYERFLENRIRDAFGFEGTPIKIIARPRK 436 >gi|28378534|ref|NP_785426.1| GTP-binding protein EngA [Lactobacillus plantarum WCFS1] gi|254556748|ref|YP_003063165.1| GTP-binding protein EngA [Lactobacillus plantarum JDM1] gi|300767479|ref|ZP_07077391.1| ribosome-associated GTPase EngA [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308180691|ref|YP_003924819.1| GTP-binding protein EngA [Lactobacillus plantarum subsp. plantarum ST-III] gi|37999659|sp|Q88VZ6|DER_LACPL RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|28271370|emb|CAD64275.1| GTP-binding protein [Lactobacillus plantarum WCFS1] gi|254045675|gb|ACT62468.1| GTP-binding protein EngA [Lactobacillus plantarum JDM1] gi|300495298|gb|EFK30454.1| ribosome-associated GTPase EngA [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308046182|gb|ADN98725.1| GTP-binding protein EngA [Lactobacillus plantarum subsp. plantarum ST-III] Length = 436 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 138/461 (29%), Positives = 242/461 (52%), Gaps = 31/461 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST+FNR+ ++++V + PG+TRDR+Y + G F+++DT GI D + Sbjct: 6 VAIVGRPNVGKSTIFNRIAGDRISIVEDTPGVTRDRIYANSEWLGQEFSLIDTGGI-DIE 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + KQ+ Q E+AI+EA +I++L+ K G+T D + L + N P+++ NK+D Sbjct: 65 DAPFIKQITQQAEIAIDEADVIIYLVSIKEGVTDADEHVAQILYRSNKPVVLGVNKVDNP 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + Y+ YSL F + IS H LG +L + K F + K E+ Sbjct: 125 ELRSEVYDFYSLGFGDPYPISGAHGLGLGDLLDAVIKNFPE-------------KSGEDE 171 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P +R +++GRPNVGKS+++N LLG +R++ +G TRD++ Sbjct: 172 PGT----------------IRFSLIGRPNVGKSSIVNALLGEDRVIVSDVAGTTRDAIDT 215 Query: 245 SW-NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + + + DTAG+RK ++ E+ E+ +V ++++++ + + +++ +QD Sbjct: 216 KFTDQDGDRFVMVDTAGIRKKGKVYENTERYSVMRALKAIDNSDVALFVINGEEGIREQD 275 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 R+ G +++ +NKWD+V + +Q+ + I +S +T + Sbjct: 276 KRVAGYAHEAGKGIIIVVNKWDLVKKDNHTMQEFEAYIRDQFVYLSYAPIIFVSAKTNQR 335 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 L+ L + ++N RI +S LN + NP P+ + R+ Y TQ+ PP+F Sbjct: 336 LEQLPALIKKVNTNHMRRIQSSVLNDVIMDAIAMNPTPSDNGKRLRVYYATQVAIQPPTF 395 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 ++F P+ + SY+R+L N++R F SG PI M + K Sbjct: 396 VVFVNDPDMMHFSYERFLENQIRNAFDFSGTPIHMIERRRK 436 >gi|229016860|ref|ZP_04173788.1| GTP-binding protein engA [Bacillus cereus AH1273] gi|229023066|ref|ZP_04179580.1| GTP-binding protein engA [Bacillus cereus AH1272] gi|228738212|gb|EEL88694.1| GTP-binding protein engA [Bacillus cereus AH1272] gi|228744421|gb|EEL94495.1| GTP-binding protein engA [Bacillus cereus AH1273] Length = 436 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 147/458 (32%), Positives = 240/458 (52%), Gaps = 29/458 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKST+FNR+V +++++V + PGITRDR+Y FNI+DT GI G Sbjct: 6 IAIVGRPNVGKSTIFNRIVGERVSIVEDIPGITRDRIYSAGEWLNHEFNIIDTGGIDIGD 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + Q+ Q E+AI+EA +I+F+ + + G+T D + L + PI++ NK+D Sbjct: 66 EPFLT-QIRQQAEVAIDEADVIIFMTNGRDGVTAADEEVAKILYRSKKPIVLAVNKVDNP 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + Y+ Y+L F E IS H LG +L + NH IE ++E+ Sbjct: 125 EMRSDIYDFYALGFGEPFPISGTHGLGLGDL--------LDEAANH-FPKIEEEAYDDET 175 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 +R +++GRPNVGKS+L+N LLG R++ + +G TRD+V Sbjct: 176 -------------------IRFSLIGRPNVGKSSLVNALLGQERVIVSNIAGTTRDAVDT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 ++ + I DTAGMRK ++ ES E+ +V ++++++ + +V+LD +QD Sbjct: 217 PYSKDDQDYVIIDTAGMRKKGKVYESTEKYSVLRALRAIERSDVVLVVLDGEEGIIEQDK 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 +I ++G AV++ +NKWD V ++ + + I +S +T + Sbjct: 277 KIAGYAHDSGRAVIIVVNKWDAVKKDEKTMKAFEENIRAHFQFLDYAPIVFLSAKTKKRT 336 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 L+ + E+N+ R+ T+ LN + NP PT ++ Y TQ+ PP+F+ Sbjct: 337 QTLLPVINEVNESHSIRVQTNVLNDVIMDAVAMNPTPTHNGSRLKIFYATQVAVKPPTFV 396 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 IF + SY+R+L NRLR F G PI + ++ Sbjct: 397 IFVNDTELMHFSYERFLKNRLREAFGFVGTPIHIIARA 434 >gi|27262166|gb|AAN87364.1| GTP-binding protein [Heliobacillus mobilis] Length = 445 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 147/464 (31%), Positives = 243/464 (52%), Gaps = 35/464 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTLFNRL ++A+V + PG+TRDRLY A F +VDT G+ G Sbjct: 9 VAVVGRPNVGKSTLFNRLTGGRVAIVEDRPGVTRDRLYRNAKWLNREFTLVDTGGLEFGA 68 Query: 65 NCS-IAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + + ++ + Q E AI EA +ILF++D KAGIT D + + LR+ P+ +V NK++ Sbjct: 69 DGNPFSEVIYKQAEAAIAEADVILFMVDGKAGITADDETVAAVLRRTKKPVFLVVNKIED 128 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + +YE ++L + + ISA H + T +L + +E + E+ Sbjct: 129 FSQRDKYYEFFALGLGDPIPISATHGMNTGDLLDAV------------IEALPPEGDEED 176 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 P ++IAV+G+PNVGKS+++N +LG R++ + G TRD++ Sbjct: 177 DPDT----------------IKIAVIGKPNVGKSSMVNAILGEERVIVSNIPGTTRDAID 220 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + + + DTAGMR+ +I ES+E+ +V +S+++V + ++++DA+ +QD Sbjct: 221 TPFEREGKHYVLIDTAGMRRKGKIDESVERYSVMRSLRAVDRSDVVLMVIDASQGVTEQD 280 Query: 304 LRIVDSVFNTGHAVVLALNKWDMV--SDK-LNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 +I G A VL LNKWD+V DK +N + + L IY++ + T Sbjct: 281 KKIAGYAHEAGKACVLVLNKWDLVPKDDKTMNRFDKVVRSELGFLNYAPTIYVSAL---T 337 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G+ L ++ V + + RI TS +N + P P+ R ++ Y+TQ P Sbjct: 338 GQRLPKILELVDFVTEQANRRIPTSVINELMTDIIRVTPAPSDRGRRLKILYVTQTSVKP 397 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 P+F+ F SY+R+++NR R F G P+R + + Sbjct: 398 PTFVFFVNDEELFHFSYQRHIMNRFRETFGFEGTPVRFIIRQRE 441 >gi|78484970|ref|YP_390895.1| small GTP-binding protein domain-containing protein [Thiomicrospira crunogena XCL-2] gi|78363256|gb|ABB41221.1| GTP-binding protein [Thiomicrospira crunogena XCL-2] Length = 480 Score = 250 bits (638), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 146/469 (31%), Positives = 250/469 (53%), Gaps = 38/469 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTLFNRL + + A+V ++PG+TRDR YG + + +VDT G++ G+ Sbjct: 6 IALVGRPNVGKSTLFNRLTRSRDAIVADYPGLTRDRQYGTGRVGSTPYIVVDTGGLS-GE 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + M Q + AI EA +LFL+D +AG+ P D +I S++R N P+ ++ NK + Sbjct: 65 QEGVDPLMAGQVQSAIGEADAVLFLVDGRAGLIPADESIASYIRHFNKPVYLLVNKAEGH 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSEL-HSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + Y + E IS+ H +E+ SV+ + + L++ ++ Sbjct: 125 KKDVIANDFYQMGLGEPFVISSAHGDNVNEMIESVLSDVAQDVEDEDELDL-------DK 177 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 P +R+AV+GRPNVGKSTLINR++G R++ G TRDS+ Sbjct: 178 HPG-----------------IRVAVIGRPNVGKSTLINRMIGEERVVAFDMPGTTRDSIY 220 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + + + + DTAG+R+ I E +E+ ++ K+++++ + ++++D + QD Sbjct: 221 VPFERQGELYTLIDTAGVRRRKNIKEKIEKFSIVKAIEAMESSNVVVLVVDGSEGITDQD 280 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYIN-----TISG 358 L ++ +G +V+A+NKWD NL D R K IK+ + +++ IS Sbjct: 281 LTLLGLALESGRGLVIAINKWD------NLTSDQRAK-IKHELEYKLHFVDYAKRHLISA 333 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 G G+ DL ++ + +++TS LN L++ L + PP I R +L+Y Sbjct: 334 LHGTGVGDLFKTINAVYHAAMKQVSTSDLNRVLEQAVLDHQPPLIGGRRVKLRYAHLGGL 393 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 +PP ++ T +K+P++Y +YL+N R F G P+ + ++ + NPY Sbjct: 394 NPPRVIVHGTQVDKLPQAYSKYLMNVFRKAFKWVGTPVMIEYKVTSNPY 442 >gi|227524465|ref|ZP_03954514.1| GTP-binding protein EngA [Lactobacillus hilgardii ATCC 8290] gi|227088335|gb|EEI23647.1| GTP-binding protein EngA [Lactobacillus hilgardii ATCC 8290] Length = 435 Score = 250 bits (638), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 137/461 (29%), Positives = 242/461 (52%), Gaps = 30/461 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+A +G PNVGKST+FNR+ ++++V + PG+TRDR+Y A F ++DT GI Sbjct: 5 TVAFIGRPNVGKSTIFNRIAGDRISIVEDTPGVTRDRIYTHAEWLANEFAMIDTGGIQI- 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + Q+ +Q E+AI EA +I+F++ +K G+T D + L + + P+++ NK D Sbjct: 64 SDAPFNTQIKNQAEIAIEEADVIVFIVSAKEGLTSDDEQVAKILYRSDKPVVLAVNKADN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 A+ + Y+ Y+L F + + IS H G +L I + F ++ N P Sbjct: 124 PDAREDIYDFYALGFGDPMPISGVHGTGIGDLLDKIVEKFPKETGNVP------------ 171 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 + +R +++GRPNVGKS+L+N +LG NR++ +G TRD++ Sbjct: 172 -----------------NDDIRFSIIGRPNVGKSSLVNAILGENRVIVSDVAGTTRDAID 214 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + N + DTAG+RK ++ E+ E+ +V ++M+++ + + +++A +QD Sbjct: 215 TRFEADNIKFTMVDTAGIRKRGKVYENTERYSVMRAMKAIDQSDVILFVINAEGGIREQD 274 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 ++ G A++ +NKWD + + QD T + I +S +T + Sbjct: 275 KKVAGYAHEAGKAIITVVNKWDTLKKTNHTQQDFETLIRNEFQYMAYSPIIFVSAKTKQR 334 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 ++ L + + + R+ +S LN + +P PT+ + R+ Y TQ+ S PP+F Sbjct: 335 IEQLPALIKRVYDNHEKRVQSSALNDVIMDAVAVHPTPTVNGKRLRIYYATQVVSGPPTF 394 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 ++F P+ + SY R+L N++R NF SG PIR+ +S K Sbjct: 395 VVFVNNPDLMHFSYVRFLENQIRDNFDFSGTPIRIIKRSRK 435 >gi|331701406|ref|YP_004398365.1| GTP-binding protein engA [Lactobacillus buchneri NRRL B-30929] gi|329128749|gb|AEB73302.1| GTP-binding protein engA [Lactobacillus buchneri NRRL B-30929] Length = 435 Score = 250 bits (638), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 136/461 (29%), Positives = 246/461 (53%), Gaps = 30/461 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+A +G PNVGKST+FNR+ ++++V + PG+TRDR+Y F ++DT GI Sbjct: 5 TVAFIGRPNVGKSTIFNRIAGDRISIVEDTPGVTRDRIYSHGEWLATKFAMIDTGGIQI- 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + A Q+ Q E+AI+EA +I+F++ K G+T D + L + + P+++ NK+D Sbjct: 64 SDAPFATQIKSQAEIAIDEADVIVFIVSGKEGVTAEDEQVAKILYRSDKPVVLAVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 ++ + YE YSL F + + IS H LG +L + +K+P K +E+ Sbjct: 124 PESREDIYEFYSLGFGDPMPISGVHGLGLGDLLDKVV----EKFP----------KTDEK 169 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 + ++I R +++GRPNVGKS+L+N +LG +R++ +G TRD++ Sbjct: 170 TDNDDI---------------RFSIIGRPNVGKSSLVNAILGEDRVIVSDIAGTTRDAID 214 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + + DTAG+RK ++ E+ E+ +V ++M+++ + + +++A +QD Sbjct: 215 TRFEADGIKFTMVDTAGIRKRGKVYENTERYSVMRAMKAIDQSDVILFVMNAEEGIREQD 274 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 ++ G A++ +NKWD + + QD T + I +S T + Sbjct: 275 KKVAGYAHEAGKAIITVVNKWDTLKKTNHTQQDFETLIRNEFQYMSYSPIIFVSAVTKQR 334 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 ++ L + ++ + R+ +S LN + +P PT+ + R+ Y TQ+ + PP+F Sbjct: 335 IEKLPALIKQVYDNHEKRVQSSALNDVIMGAVAVHPTPTVNGKRLRIYYATQVVTGPPTF 394 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 ++F P+ + SY R+L N++R NF +G PIR+ +S K Sbjct: 395 VVFVNNPDLMHFSYVRFLENQIRDNFDFTGTPIRIIKRSRK 435 >gi|42560947|ref|NP_975398.1| GTP-binding protein EngA [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|81829393|sp|Q6MTJ6|DER_MYCMS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|42492444|emb|CAE77040.1| conserved GTPase of unknown function [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|301321230|gb|ADK69873.1| ribosome-associated GTPase EngA [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 435 Score = 250 bits (638), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 152/466 (32%), Positives = 256/466 (54%), Gaps = 42/466 (9%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKS+LFNR++K+K ++V N PG+TRDR+Y A F +VDT GI+ + Sbjct: 6 VAIIGRPNVGKSSLFNRIIKEKKSIVDNKPGVTRDRIYSNAEWLTREFILVDTGGISIDQ 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + ++ QT++AI +A +I+F++D + D I L K P+I+ NK D + Sbjct: 66 QL-FSNEIQIQTQIAIEQADVIIFVVDFLNRLDKDDKMIAKILHKSKKPVILAINKYDKK 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + YE +L F ++ IS+ H +G +L ++I +N+ Sbjct: 125 TIDDHNYEFMNLGFSDLYFISSTHGIGIGDLLD---------------KVISYISKNDVD 169 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 K++ T +IA++GRPNVGKS+L+N L+ NR++ G T D+V I Sbjct: 170 LKDDST--------------KIAIIGRPNVGKSSLVNSLVNENRMIVSEIEGTTLDAVDI 215 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 S+++ + + DTAG+RK S++ +++E+ + +S+ ++ + ++++DAT P QD Sbjct: 216 SFSYNKNKYTVIDTAGIRKKSKLGQTVEKYSYLRSLSAITNSDIVLLMIDATKPITDQDT 275 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDK----LNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 I +++ V++ +NKWD+V +K L +++R K + I+I+ + Sbjct: 276 NIGGLIYDEKKPVIIVVNKWDLVKNKQEQILKKEEEIRA-YFKYISYAKIIFISALDKTR 334 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLK--YITQIQS 418 + DL V +I + ++ T LN L K QL NP P FN NRLK Y +Q+Q+ Sbjct: 335 VTKILDL---VADIKQSLSVKVKTYVLNEVLNKAQLINPAPE-FNG-NRLKIYYASQVQA 389 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 P+F++FC PN + SYKR+L N++R +F IPI + F+ K Sbjct: 390 YIPTFVLFCNHPNYLHFSYKRFLENQIRFSFGFDSIPINLIFRERK 435 >gi|163939419|ref|YP_001644303.1| GTP-binding protein EngA [Bacillus weihenstephanensis KBAB4] gi|229010911|ref|ZP_04168107.1| GTP-binding protein engA [Bacillus mycoides DSM 2048] gi|229058239|ref|ZP_04196627.1| GTP-binding protein engA [Bacillus cereus AH603] gi|229132411|ref|ZP_04261265.1| GTP-binding protein engA [Bacillus cereus BDRD-ST196] gi|229166450|ref|ZP_04294206.1| GTP-binding protein engA [Bacillus cereus AH621] gi|229710726|sp|A9VMB3|DER_BACWK RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|163861616|gb|ABY42675.1| small GTP-binding protein [Bacillus weihenstephanensis KBAB4] gi|228617024|gb|EEK74093.1| GTP-binding protein engA [Bacillus cereus AH621] gi|228651117|gb|EEL07098.1| GTP-binding protein engA [Bacillus cereus BDRD-ST196] gi|228720103|gb|EEL71687.1| GTP-binding protein engA [Bacillus cereus AH603] gi|228750311|gb|EEM00141.1| GTP-binding protein engA [Bacillus mycoides DSM 2048] Length = 436 Score = 250 bits (638), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 147/458 (32%), Positives = 240/458 (52%), Gaps = 29/458 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKST+FNR+V +++++V + PGITRDR+Y FNI+DT GI G Sbjct: 6 IAIVGRPNVGKSTIFNRIVGERVSIVEDIPGITRDRIYSAGEWLNHEFNIIDTGGIDIGD 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + Q+ Q E+AI+EA +I+F+ + + G+T D + L + PI++ NK+D Sbjct: 66 EPFLT-QIRQQAEVAIDEADVIIFMTNGRDGVTAADEEVAKILYRSKKPIVLAVNKVDNP 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + Y+ Y+L F E IS H LG +L + NH IE ++E+ Sbjct: 125 DMRSDIYDFYALGFGEPFPISGTHGLGLGDL--------LDEAANH-FPKIEEEAYDDET 175 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 +R +++GRPNVGKS+L+N LLG R++ + +G TRD+V Sbjct: 176 -------------------IRFSLIGRPNVGKSSLVNALLGQERVIVSNIAGTTRDAVDT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 ++ + I DTAGMRK ++ ES E+ +V ++++++ + +V+LD +QD Sbjct: 217 PYSKDDQDYVIIDTAGMRKKGKVYESTEKYSVLRALRAIERSDVVLVVLDGEEGIIEQDK 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 +I ++G AV++ +NKWD V ++ + + I +S +T + Sbjct: 277 KIAGYAHDSGRAVIIVVNKWDAVKKDEKTMKAFEENIRAHFQFLEYAPIVFLSAKTKKRT 336 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 L+ + E+N+ R+ T+ LN + NP PT ++ Y TQ+ PP+F+ Sbjct: 337 QTLLPVINEVNESHSIRVQTNVLNDVIMDAVAMNPTPTHNGSRLKIFYATQVAVKPPTFV 396 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 IF + SY+R+L NRLR F G PI + ++ Sbjct: 397 IFVNDTELMHFSYERFLKNRLREAFGFVGTPIHIIARA 434 >gi|317121946|ref|YP_004101949.1| ribosome-associated GTPase EngA [Thermaerobacter marianensis DSM 12885] gi|315591926|gb|ADU51222.1| ribosome-associated GTPase EngA [Thermaerobacter marianensis DSM 12885] Length = 455 Score = 250 bits (638), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 140/458 (30%), Positives = 232/458 (50%), Gaps = 17/458 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNR++++++A+ + PG+TRDRLY G F +VDT G+A+G Sbjct: 5 VAIVGRPNVGKSTLFNRIIERRLAIEDDVPGVTRDRLYADTDWAGRAFTLVDTGGLAEGD 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + Q+ Q E A+ EA +++ ++D +AG+TP D + LR+ P I+ NK+D Sbjct: 65 D-PLTVQVRRQVEAAVREADVLVMVVDGQAGVTPADEEVARLLRQAQKPTILAVNKVDDP 123 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 Y+ + L E + ++A +L + + P + EE+ Sbjct: 124 HWDGVQYDFFRLGLGEPIPVAAGPGRNVGDLLDAVVRALPGPSP-------ADEPGGEEA 176 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 + G+ +V A+VGRPNVGKS+L+NRLLG R++ G TRD+V + Sbjct: 177 GRGAWGEPGEIAV---------AIVGRPNVGKSSLVNRLLGEERVVVSDIPGTTRDAVDV 227 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 W DTAG+R+ SR+ + +E + ++ +++ + ++LDA P QD Sbjct: 228 LWRRGERVFRFIDTAGLRRKSRVKDDVEFYSTLRTQRALARADVACLVLDARDPATDQDK 287 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 RI G A VLA+NKWD+V+ + R + + I +S TG+ + Sbjct: 288 RIAGMALEEGKACVLAVNKWDLVARGPDTADQYREALYREYDFLQFAPIVFLSALTGQRI 347 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 D L+ + + + ++ L L L + PP+ R R+ + Q+ PP+ L Sbjct: 348 DRLVEWIGRVADNHRRQVPEPVLRKVLDDALLVHEPPSRKGRRLRILRVRQVADRPPTIL 407 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 P + S++R+L N LR F +G P+R+ F++ Sbjct: 408 FLVNDPELVHFSFQRFLENVLRQAFDFTGTPLRLVFRA 445 >gi|311030574|ref|ZP_07708664.1| GTP-binding protein EngA [Bacillus sp. m3-13] Length = 436 Score = 250 bits (638), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 138/461 (29%), Positives = 240/461 (52%), Gaps = 29/461 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AIVG PNVGKST+FNR+V +++++V + PG+TRDR+Y FNI+DT GI + Sbjct: 5 TVAIVGRPNVGKSTIFNRIVGERISIVEDVPGVTRDRIYSSGEWLNQYFNIIDTGGI-EI 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + Q+ +Q E+AI+EA +I+F+ + + G+T D + L + P+++ NK+D Sbjct: 64 SDAPFMTQIREQAEIAIDEADVIIFMTNGREGLTSADEEVAKILYRSKKPVVVAVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + Y+ Y+L F E + IS H LG +L + + F + E I Sbjct: 124 PDMRDTLYDFYALGFGEPIPISGSHGLGLGDLLDFVIENFPKDEEEDYDEDI-------- 175 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 ++ +++GRPNVGKS+L+N LLG R++ +G TRD++ Sbjct: 176 --------------------IKFSLIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDAID 215 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 +++ I DTAGMRK ++ E+ E+ +V ++++++ + +V+++ +QD Sbjct: 216 TPYSYDGKDYVIIDTAGMRKKGKVYETTEKYSVLRALRAIERSDVVLVVINGEEGIIEQD 275 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 +I G A+V+ +NKWD V +++ K + + I +S +T + Sbjct: 276 KKIAGYAHEAGRAIVIVVNKWDAVEKDEKTMKEFEQKIRDHFLFLDYAPIVFLSAKTKKR 335 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 + L+ + ++ R+ T+ LN + NP PT + ++ Y TQ+ PP+F Sbjct: 336 VHTLIPKIDMASENHSMRVVTTVLNDVIMDAVAMNPTPTDKGQRLKIYYATQVAVKPPTF 395 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 +IF P + SYKR+L NR+R F G PI++ + K Sbjct: 396 VIFVNDPELLHFSYKRFLENRIRDAFGFEGTPIKLIARPRK 436 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 52/185 (28%), Positives = 88/185 (47%), Gaps = 15/185 (8%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI- 60 I +++G PNVGKS+L N L+ ++ +V + G TRD + +G + I+DTAG+ Sbjct: 175 IIKFSLIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDAIDTPYSYDGKDYVIIDTAGMR 234 Query: 61 ADGKNCSIAKQMNDQTEL-AINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 GK ++ + L AI + ++L +I+ + GI D I + + I+IV N Sbjct: 235 KKGKVYETTEKYSVLRALRAIERSDVVLVVINGEEGIIEQDKKIAGYAHEAGRAIVIVVN 294 Query: 120 KMDT---------RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNH 170 K D Q+ LD+ IV +SA+ +H++I KI NH Sbjct: 295 KWDAVEKDEKTMKEFEQKIRDHFLFLDYAPIVFLSAKT---KKRVHTLIPKI-DMASENH 350 Query: 171 PLEMI 175 + ++ Sbjct: 351 SMRVV 355 >gi|188587902|ref|YP_001920548.1| GTP-binding protein EngA [Clostridium botulinum E3 str. Alaska E43] gi|238689667|sp|B2V3Z1|DER_CLOBA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|188498183|gb|ACD51319.1| ribosome-associated GTPase EngA [Clostridium botulinum E3 str. Alaska E43] Length = 438 Score = 250 bits (638), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 141/467 (30%), Positives = 249/467 (53%), Gaps = 42/467 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFN+L K++++V + PG+TRDR+Y +A F ++DT GI Sbjct: 6 VAIVGRPNVGKSTLFNKLAGKRISIVQDTPGVTRDRVYAEAEWLNYNFTMIDTGGIEPTN 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + I KQM Q +AI A +I+F++D K G+T D + + LRK P+++V NK+D+ Sbjct: 66 DDIIMKQMRRQANIAIETADVIVFIVDGKEGLTAADQEVANMLRKSKKPVVLVVNKIDSL 125 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + N +E Y+L + + ISA LG ++ + + F + + + ++E Sbjct: 126 KYEENSWEFYNLGIGDPITISASQALGLGDMLDKVVEHFDR---------FDADAEDDEY 176 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 +RIA++G+PNVGKS+LIN+LLG RL+ +G TRD++ Sbjct: 177 -------------------IRIAMIGKPNVGKSSLINKLLGEERLIVSDVAGTTRDAIDS 217 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + DTAG+R+ S++ E +E+ +V ++ S+ + I+++DA +QD Sbjct: 218 YLETEQGKFILIDTAGLRRKSKVKEEIERYSVIRTYASIEKADVCILMIDAQDGVTEQDE 277 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTK---AIKNLPQIGDIYINTISGRTG 361 +I+ A+++ +NKWD+V ++ + ++K +P ++I+ ++G+ Sbjct: 278 KIIGYAHELNKAIMVLVNKWDLVEKDDKTMEKFKKDLQGSLKFMPYAEYLFISALTGQRT 337 Query: 362 EGLDDLMVSVLEINKL----WKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 +LE+ K + R++T LN + + L PP + + ++ Y TQ+ Sbjct: 338 H-------KILELAKKCYNNYNKRVSTGILNDVISQAILMKEPPIVSLKRMKIYYATQVA 390 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 + PP F+ F + SY+RYL N+LR +F G I++ ++ K Sbjct: 391 TKPPKFVFFVNDASASHFSYERYLENQLRNSFDFKGTGIQIEYRQRK 437 Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 51/174 (29%), Positives = 87/174 (50%), Gaps = 12/174 (6%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + KP+ +A+VGRPNVGKSTL N+L G + G+TRD V W N+ + DT Sbjct: 1 MGKPI-VAIVGRPNVGKSTLFNKLAGKRISIVQDTPGVTRDRVYAEAEWLNYNFTMIDTG 59 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+ +P+ + + ++ +++ ++ T + + ++D D + + + + VVL Sbjct: 60 GI-EPTN-DDIIMKQMRRQANIAIETADVIVFIVDGKEGLTAADQEVANMLRKSKKPVVL 117 Query: 320 ALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 +NK D + + N + NL IGD TIS GL D++ V+E Sbjct: 118 VVNKIDSLKYEENSWE------FYNLG-IGDPI--TISASQALGLGDMLDKVVE 162 >gi|302333085|gb|ADL23278.1| GTP-binding protein EngA [Staphylococcus aureus subsp. aureus JKD6159] Length = 436 Score = 250 bits (638), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 141/455 (30%), Positives = 232/455 (50%), Gaps = 29/455 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST+FNR+V +++++V + PG+TRDR+Y FNI+DT GI G Sbjct: 6 VAIVGRPNVGKSTIFNRIVGERVSIVEDTPGVTRDRIYSSGEWLTHDFNIIDTGGIEIG- 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + Q+ Q E+AI+EA +I+F+++ + G+T D + L K P+++ NK+D Sbjct: 65 DAPFQTQIRAQAEIAIDEADVIIFMVNVREGLTQSDEMVAQILYKSKKPVVLAVNKVDNM 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + Y+ YSL F E IS H LG +L + F ++ Sbjct: 125 EMRTDVYDFYSLGFGEPYPISGSHGLGLGDLLDAVVSHFGEE------------------ 166 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 +R++++GRPNVGKS+L+N +LG +R++ + +G TRD++ Sbjct: 167 ----------EEDPYDEDTIRLSIIGRPNVGKSSLVNAILGEDRVIVSNVAGTTRDAIDT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 +++ + DTAGMRK ++ ES E+ +V ++++++ +V++DA +QD Sbjct: 217 EYSYDGQDYVLIDTAGMRKKGKVYESTEKYSVLRALKAIERSNVVLVVIDAEQGIIEQDK 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 R+ G AVV +NKWD V ++ + K + I +S + L Sbjct: 277 RVAGYAHEQGKAVVTVVNKWDTVEKDSKTMKKFEDEVRKEFQFLDYAQIAFVSAKERTRL 336 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 L + E ++ K R+ +S LN + NP PT R + Y TQ+ PP+F+ Sbjct: 337 RTLFPYINEASENHKKRVQSSTLNEVVTDAISMNPTPTDKGRRLNVFYATQVAIEPPTFV 396 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 +F + SYKRYL N++R F G PI + Sbjct: 397 VFVNDVELMHFSYKRYLENQIRAAFGFEGTPIHII 431 >gi|295692881|ref|YP_003601491.1| GTP-binding protein enga [Lactobacillus crispatus ST1] gi|295030987|emb|CBL50466.1| GTP-binding protein engA [Lactobacillus crispatus ST1] Length = 435 Score = 250 bits (638), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 137/460 (29%), Positives = 243/460 (52%), Gaps = 30/460 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNR++ +++A+V + PG+TRDR Y QA G F+++DT GI + Sbjct: 6 VAIVGQPNVGKSTLFNRIINQRLAIVEDKPGVTRDRNYAQAEWMGHKFDLIDTGGIT-WE 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I +++ Q E+AI EA +I+ L + +T D I L + P+I+ NK D Sbjct: 65 GGKIEEEIRAQAEIAIEEADVIVMLTNVVNHVTDLDERIAHLLYRTKKPVILAVNKADNP 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + Y+ YSL + + +S+ H G +L I F ++++ Sbjct: 125 EQRSDIYDFYSLGLGDPIPVSSSHGTGIGDLLDQIVNDFPD---------------DKDT 169 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 +++ S +V+GRPNVGKS+++N+LLG +R++ ++ G TRD+V Sbjct: 170 EADDVIS--------------FSVIGRPNVGKSSIVNKLLGEDRVIVANEEGTTRDAVDT 215 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + ++ DTAG+R+ ++ E E+ +V ++M ++ + ++++DA+ +QD Sbjct: 216 PFTHDGVKFKVVDTAGIRRRGKVYEKTEKYSVMRAMSAIERSDVVLLVIDASTGIREQDK 275 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 + G +++ +NKWD+ ++ + + I +S +TG+ L Sbjct: 276 HVAGYAHEAGRGIIIVVNKWDLPKKNSTSAKEFEREIRDEFQYLDYAPILFVSAKTGQRL 335 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 D + V E+ RI +S LN L + P P + + R+ Y+TQ+ ++PP+F+ Sbjct: 336 DQIPNMVKEVYDNQNQRIQSSVLNDLLLEASKLVPTPMVKGKRLRVYYMTQVSTNPPTFV 395 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 +F P + SY+R+LIN+LR NF +G PI++ + K Sbjct: 396 VFVNDPELMHFSYERFLINQLRQNFDFTGTPIKILPRKRK 435 Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 41/128 (32%), Positives = 67/128 (52%), Gaps = 12/128 (9%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI- 60 + + +++G PNVGKS++ N+L+ + +V N G TRD + +GV F +VDTAGI Sbjct: 174 VISFSVIGRPNVGKSSIVNKLLGEDRVIVANEEGTTRDAVDTPFTHDGVKFKVVDTAGIR 233 Query: 61 ------ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPI 114 + S+ + M+ AI + ++L +ID+ GI D + + + I Sbjct: 234 RRGKVYEKTEKYSVMRAMS-----AIERSDVVLLVIDASTGIREQDKHVAGYAHEAGRGI 288 Query: 115 IIVSNKMD 122 IIV NK D Sbjct: 289 IIVVNKWD 296 >gi|251778692|ref|ZP_04821612.1| ribosome-associated GTPase EngA [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083007|gb|EES48897.1| ribosome-associated GTPase EngA [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 438 Score = 250 bits (638), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 141/467 (30%), Positives = 249/467 (53%), Gaps = 42/467 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFN+L K++++V + PG+TRDR+Y +A F ++DT GI Sbjct: 6 VAIVGRPNVGKSTLFNKLAGKRISIVQDTPGVTRDRVYAEAEWLNYNFTMIDTGGIEPTN 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + I KQM Q +AI A +I+F++D K G+T D + + LRK P+++V NK+D+ Sbjct: 66 DDIIMKQMRRQANIAIETADVIVFIVDGKEGLTAADQEVANMLRKSKKPVVLVVNKIDSL 125 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + N +E Y+L + + ISA LG ++ + + F + + + ++E Sbjct: 126 KYEENSWEFYNLGIGDPITISASQALGLGDMLDRVVEHFDR---------FDADAEDDEY 176 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 +RIA++G+PNVGKS+LIN+LLG RL+ +G TRD++ Sbjct: 177 -------------------IRIAMIGKPNVGKSSLINKLLGEERLIVSDVAGTTRDAIDS 217 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + DTAG+R+ S++ E +E+ +V ++ S+ + I+++DA +QD Sbjct: 218 YLETEQGKFILIDTAGLRRKSKVKEEIERYSVIRTYASIEKADVCILMIDAQDGVTEQDE 277 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTK---AIKNLPQIGDIYINTISGRTG 361 +I+ A+++ +NKWD+V ++ + ++K +P ++I+ ++G+ Sbjct: 278 KIIGYAHELNKAIMVLVNKWDLVEKDDKTMEKFKKDLQGSLKFMPYAEYLFISALTGQRT 337 Query: 362 EGLDDLMVSVLEINKL----WKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 +LE+ K + R++T LN + + L PP + + ++ Y TQ+ Sbjct: 338 H-------KILELAKKCYNNYNKRVSTGILNDVISQAILMKEPPIVSLKRMKIYYATQVA 390 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 + PP F+ F + SY+RYL N+LR +F G I++ ++ K Sbjct: 391 TKPPKFVFFVNDASASHFSYERYLENQLRNSFDFKGTGIQIEYRQRK 437 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 51/174 (29%), Positives = 87/174 (50%), Gaps = 12/174 (6%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + KP+ +A+VGRPNVGKSTL N+L G + G+TRD V W N+ + DT Sbjct: 1 MGKPI-VAIVGRPNVGKSTLFNKLAGKRISIVQDTPGVTRDRVYAEAEWLNYNFTMIDTG 59 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+ +P+ + + ++ +++ ++ T + + ++D D + + + + VVL Sbjct: 60 GI-EPTN-DDIIMKQMRRQANIAIETADVIVFIVDGKEGLTAADQEVANMLRKSKKPVVL 117 Query: 320 ALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 +NK D + + N + NL IGD TIS GL D++ V+E Sbjct: 118 VVNKIDSLKYEENSWE------FYNLG-IGDPI--TISASQALGLGDMLDRVVE 162 >gi|229029283|ref|ZP_04185373.1| GTP-binding protein engA [Bacillus cereus AH1271] gi|229172241|ref|ZP_04299805.1| GTP-binding protein engA [Bacillus cereus MM3] gi|228611229|gb|EEK68487.1| GTP-binding protein engA [Bacillus cereus MM3] gi|228732031|gb|EEL82923.1| GTP-binding protein engA [Bacillus cereus AH1271] Length = 436 Score = 249 bits (637), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 148/458 (32%), Positives = 239/458 (52%), Gaps = 29/458 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKST+FNR+V +++++V + PGITRDR+Y FNI+DT GI G Sbjct: 6 IAIVGRPNVGKSTIFNRIVGERVSIVEDIPGITRDRIYSAGEWLNHEFNIIDTGGIDIGD 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + Q+ Q E+AI+EA +I+F+ + + G+T D + L + PI++ NK+D Sbjct: 66 EPFLT-QIRQQAEVAIDEADVIIFMTNGRDGVTAADEEVAKILYRSKKPIVLAVNKVDNP 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + Y+ Y+L F E IS H LG +L + NH IE ++E+ Sbjct: 125 EMRSDIYDFYALGFGEPFPISGTHGLGLGDL--------LDEAANH-FPKIEEEAYDDET 175 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 +R +++GRPNVGKS+L+N LLG R++ + +G TRD+V Sbjct: 176 -------------------IRFSLIGRPNVGKSSLVNALLGQERVIVSNIAGTTRDAVDT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 ++ I DTAGMRK ++ ES E+ +V ++++++ + +V+LD +QD Sbjct: 217 PYSKDGQDYVIIDTAGMRKKGKVYESTEKYSVLRALRAIERSDVVLVVLDGEEGIIEQDK 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 +I ++G AV++ +NKWD V ++ + + I +S +T + Sbjct: 277 KIAGYAHDSGRAVIIVVNKWDAVKKDEKTMKAFEENIRAHFQFLEYAPIVFLSAKTKKRT 336 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 L+ + E+N+ RI T+ LN + NP PT ++ Y TQ+ PP+F+ Sbjct: 337 QTLLPVINEVNESHSIRIQTNVLNDVIMDAVAMNPTPTHNGSRLKIFYATQVAVKPPTFV 396 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 IF + SY+R+L NRLR F G PI + ++ Sbjct: 397 IFVNDTELMHFSYERFLKNRLREAFGFVGTPIHIIARA 434 >gi|307564580|ref|ZP_07627120.1| ribosome-associated GTPase EngA [Prevotella amnii CRIS 21A-A] gi|307346738|gb|EFN92035.1| ribosome-associated GTPase EngA [Prevotella amnii CRIS 21A-A] Length = 437 Score = 249 bits (637), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 148/458 (32%), Positives = 245/458 (53%), Gaps = 30/458 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +AIVG PNVGKSTLFNRL K + A+V + G TRDR YG+ + NG F++VDT G Sbjct: 1 MANLVAIVGRPNVGKSTLFNRLTKTRHAIVSDVAGTTRDRQYGKCLWNGREFSVVDTGGW 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + + Q +A EA ++LFL+D++ GIT +D + LR+ N+P+++V+NK Sbjct: 61 VVKSDDIFEDAIRQQVLVATEEADIVLFLVDTETGITDWDEDVALILRRTNLPVLLVANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D E Y L + + ISA+ GT +L ++ + + ++ + Sbjct: 121 VDNMGEYYTSAEFYKLGLGDPICISAQTGSGTGDLLDILLE---------KMTDVQEEEV 171 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 +++ P R AVVGRPN GKS+LIN +G R + +G TRD Sbjct: 172 DDDIP-------------------RFAVVGRPNAGKSSLINSFIGEERNIVTEIAGTTRD 212 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ +N + DTAG+R+ ++++E LE +V +S++S+ + I+++DAT E Sbjct: 213 SIYTRYNKFGFDFYLVDTAGIRRKNKVSEDLEFYSVMRSIRSIENSDVCILMIDATRGIE 272 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIK-NLPQIGDIYINTISGR 359 QD+ I + ++V+ +NKWD+V DK + D AI+ + D I S Sbjct: 273 SQDMNIFQLIQRNNKSLVVVVNKWDLVQDKNQKVIDTFVNAIRCRMAPFVDFPIIFASAL 332 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 T + + ++ + E+ K K I T+ LN + PP ++ ++ ++KY +Q+ ++ Sbjct: 333 TKQRIFKVLETAKEVYKNRKIHIGTNKLNEVMLPIIEGTPPQSVKGKFIKIKYCSQLPNT 392 Query: 420 P-PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 PSF+ + P I E Y+R+L N++R N++L G PI Sbjct: 393 QIPSFVFYANLPQYIKEQYRRFLENQIRANWNLHGCPI 430 >gi|329957356|ref|ZP_08297876.1| ribosome biogenesis GTPase Der [Bacteroides clarus YIT 12056] gi|328523069|gb|EGF50172.1| ribosome biogenesis GTPase Der [Bacteroides clarus YIT 12056] Length = 437 Score = 249 bits (637), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 156/454 (34%), Positives = 240/454 (52%), Gaps = 30/454 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNRL K + A+V G TRDR YG++ G F++VDT G Sbjct: 5 VAIVGRPNVGKSTLFNRLTKTRQAIVNEEAGTTRDRQYGKSEWLGREFSVVDTGGWVVNS 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +++ Q +A++EA +ILF++D G+T D + S LR+ P+++V+NK D Sbjct: 65 DDIFEEEIRKQVLMAVDEADVILFVVDVMNGVTDLDLQVASILRRAKKPVLLVANKTDNN 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 Q N E YSL + ISA GT +L +I FK K ++E Sbjct: 125 ELQYNAPEFYSLGLGDPYCISAVTGSGTGDLMDLIVGNFK--------------KESDEI 170 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 E+I R AVVGRPN GKS+++N +G +R + +G TRDS+ Sbjct: 171 LDEDIP--------------RFAVVGRPNAGKSSIVNAFIGEDRNIVTEIAGTTRDSIYT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 +N + DTAG+RK ++++E LE +V +S++S+ + I++LDAT E QDL Sbjct: 217 RYNKFGFDFYLVDTAGIRKKNKVSEDLEYYSVIRSIRSIENSDVCILMLDATRGIESQDL 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKN-LPQIGDIYINTISGRTGEG 363 I + +V+ +NKWD+V DK + AI++ D I S T + Sbjct: 277 NIFSLIQKNSKGLVVVVNKWDLVEDKTVKVMKTFENAIRSRFAPFVDFPIIFASALTKQR 336 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP-PS 422 + ++ + + RI T+ LN + PPP I +Y ++KYITQ+ ++ PS Sbjct: 337 ILKVLEEARTVYENRMIRIPTARLNEEMLPLIEAYPPPAIKGKYIKIKYITQLPNTQIPS 396 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 F+ F P + E Y+R+L N++R ++L+G PI Sbjct: 397 FVYFANLPQYVKEPYRRFLENKMREKWNLTGTPI 430 >gi|242278504|ref|YP_002990633.1| GTP-binding protein EngA [Desulfovibrio salexigens DSM 2638] gi|259645870|sp|C6C0G0|DER_DESAD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|242121398|gb|ACS79094.1| small GTP-binding protein [Desulfovibrio salexigens DSM 2638] Length = 450 Score = 249 bits (637), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 145/468 (30%), Positives = 256/468 (54%), Gaps = 33/468 (7%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ TIA++G PNVGKSTLFNRL++KK A+ + PGITRDR+Y + NGV + ++DT G+ Sbjct: 1 MLPTIALIGRPNVGKSTLFNRLLRKKRAITHDMPGITRDRIYAEGNYNGVHYALIDTGGL 60 Query: 61 ---ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIV 117 +D + + +Q AI EA ++ ++D + GIT D + +++R+ N PI+++ Sbjct: 61 VMESDNNSEEFQGDIFEQAREAIEEAQALILVVDGRTGITQLDEQVAAYIRQSNKPILLL 120 Query: 118 SNKMD-TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIE 176 NK+D + + + ++L F E++ +SAEH EL ++K + L Sbjct: 121 VNKVDGSELEATATADFHALGF-EMMAVSAEHGFNLLEL--------REKVADMALA--- 168 Query: 177 NNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSG 236 T +K L+IA++GRPN GKS+++N L G R++ +G Sbjct: 169 -------------TGIEYEEEDEEAKGLKIAMLGRPNAGKSSMVNALTGEERVIVSDVAG 215 Query: 237 ITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDAT 296 TRDSV +++ DTAG+R+ + IT+++E+ +V ++++S + T++++DA Sbjct: 216 TTRDSVDVTFESGGKIYTFVDTAGVRRRTNITDTIERFSVVRALRSSTKADITVMVVDAL 275 Query: 297 IPFEKQDLRIVDSVFNTGHAVVLALNKWDMVS-DKLNLLQDLRTKAIKNLPQIGDIYINT 355 KQD R+++ + ++A+NK D+VS + NLL++ +A++ + +Y + Sbjct: 276 AGITKQDKRLLEYLLREAVPFIIAVNKIDLVSKSERNLLREGFERALRMAHHVPVVYTSC 335 Query: 356 ISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQ 415 IS GL ++ ++ RI+T LN +++ ++ PP + R + KY+TQ Sbjct: 336 IS---KSGLGGILPLASKLKAECSLRISTGQLNRIMKEIIEKHQPPVVKRRRAKFKYMTQ 392 Query: 416 IQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSS 463 PP+F+ F I SY R+L NRLR ++ P+ + F+S+ Sbjct: 393 ADDEPPTFIFFINDEKLIKSSYHRFLENRLRKILNVKHAPLNIVFRST 440 >gi|294675553|ref|YP_003576169.1| ribosome-associated GTPase EngA [Prevotella ruminicola 23] gi|294472941|gb|ADE82330.1| ribosome-associated GTPase EngA [Prevotella ruminicola 23] Length = 437 Score = 249 bits (637), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 148/454 (32%), Positives = 239/454 (52%), Gaps = 30/454 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNRL K + A+V + G TRDR YG+ NG F++VDT G Sbjct: 5 VAIVGRPNVGKSTLFNRLTKTRHAIVSDEAGTTRDRQYGKCEWNGREFSVVDTGGWVVNS 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +++ Q +A EA L+LFL D G+T +D + LR+ +P+I+V+NK D Sbjct: 65 DDVFEEEIRKQVIIATEEADLVLFLCDINNGVTGWDMDVAQILRRAKLPVILVANKADDG 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + YE Y L + ISA GT +L + +I P P + +E+ Sbjct: 125 KDLYDQYEFYKLGLGDPFPISAATGSGTGDLLDKVLEIL----PEKPKDELEDG-----I 175 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P R AVVGRPN GKS++IN +G +R + +G TRDS+ Sbjct: 176 P-------------------RFAVVGRPNAGKSSIINAFIGEDRNIVTDIAGTTRDSIYT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 ++ + DTAG+R+ +++TE LE +V +S++++ + +++LDAT E QD+ Sbjct: 217 RYDKFGFDFYLVDTAGIRRKNKVTEDLEFYSVMRSIRAIENSDVCVLMLDATRGIEAQDM 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDK-LNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 I + ++V+ +NKWD+V DK +++ K + D I S T + Sbjct: 277 NIFQLIQKNNKSLVVVVNKWDLVEDKSQEVIKTFENAIRKRMAPFVDFPIIFASALTKQR 336 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP-PS 422 + ++ + ++ K +I TS LN + PPP++ +Y ++KY+ Q+ + P+ Sbjct: 337 IYKVLETAKQVYLNRKAKIGTSKLNEVMLPLIEAFPPPSVKGKYIKIKYVAQVPDTQIPT 396 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 F+ + P + E YKR+L N++R N+ L+G PI Sbjct: 397 FVFYANLPQYVKEPYKRFLENKIRENWELTGSPI 430 >gi|170017042|ref|YP_001727961.1| GTP-binding protein engA [Leuconostoc citreum KM20] gi|238688961|sp|B1MYB5|DER_LEUCK RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|169803899|gb|ACA82517.1| GTP-binding protein engA [Leuconostoc citreum KM20] Length = 437 Score = 249 bits (637), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 139/462 (30%), Positives = 242/462 (52%), Gaps = 30/462 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 +AIVG PNVGKST+FNR+ +++A+V + PG+TRDRLY A F ++DT GI G Sbjct: 5 VVAIVGRPNVGKSTIFNRMAGERIAIVEDKPGVTRDRLYAPAEWLNYEFRMIDTGGIELG 64 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 +A ++ Q ELAI+EA +I+ + + G+T D + L K + P+I+ NK+D Sbjct: 65 DEPFLA-EIRAQVELAIDEADVIVMVASGREGVTAADEVVAKMLYKTDKPVILAVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 +++ Y+ YSL ++ +S H LG +L + K F Sbjct: 124 PEMRQDIYDFYSLGLGDLFPVSGSHGLGLGDLLDAVVKHF-------------------- 163 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 P E E ++ R +++GRPNVGKS+++N +LG +R++ G TRD++ Sbjct: 164 -PDEAAEQEDDGAI-------RFSIIGRPNVGKSSIVNAMLGEDRVIVSDIEGTTRDAID 215 Query: 244 ISW-NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + + + DTAGMRK ++ E+ E+ +V ++++++ +++LDA +Q Sbjct: 216 SRFVTAEGDEFIMVDTAGMRKRGKVYENTEKYSVMRALKAIDNSNVILMVLDAEAGIREQ 275 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D + + G A+++ +NKWD + + +++ + I +S +TG+ Sbjct: 276 DKHVAGFAHDAGRAMIIIVNKWDAIEKDGHTMKEFENLIRSEFKFLDYAPIMFVSAKTGQ 335 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 LD + V +++ + RI++S LN + NP PT R R+ Y TQ+ PP+ Sbjct: 336 RLDRIPQLVKDVDDNHRKRISSSTLNDVIMDAIAVNPTPTDNGRRLRVYYATQVAIQPPT 395 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 F+IF + SY+R+L N++R F +G PI++ ++ K Sbjct: 396 FVIFVNDVELMHFSYERFLENKIREAFDFTGTPIKLIVRARK 437 >gi|161507460|ref|YP_001577414.1| GTP-binding protein EngA [Lactobacillus helveticus DPC 4571] gi|260101628|ref|ZP_05751865.1| ribosome-associated GTPase EngA [Lactobacillus helveticus DSM 20075] gi|172048280|sp|A8YV35|DER_LACH4 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|160348449|gb|ABX27123.1| phosphoglycerate dehydrogenase [Lactobacillus helveticus DPC 4571] gi|260084561|gb|EEW68681.1| ribosome-associated GTPase EngA [Lactobacillus helveticus DSM 20075] Length = 435 Score = 249 bits (637), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 141/460 (30%), Positives = 243/460 (52%), Gaps = 30/460 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNR++ +++A+V + PG+TRDR Y QA G F+++DT GI + Sbjct: 6 VAIVGQPNVGKSTLFNRIINQRLAIVEDKPGVTRDRNYAQAEWMGHKFDLIDTGGIT-WE 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I +++ Q E+AI EA +I+ L + +T D I L + P+I+ NK D Sbjct: 65 GGKIEEEIRAQAEIAIEEADVIVMLTNVVNHVTDLDERIAHLLYRTKKPVILAVNKADNP 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + Y+ YSL + + +S+ H G +L I F P E ++S Sbjct: 125 EQRNDIYDFYSLGLGDPIPVSSSHGTGIGDLLDEIVSDF-------PAE--------KDS 169 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 ++ S +V+GRPNVGKS+++N+LLG +R++ ++ G TRD+V Sbjct: 170 QANDVIS--------------FSVIGRPNVGKSSIVNKLLGEDRVIVANEEGTTRDAVDT 215 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + ++ DTAG+R+ ++ E E+ +V +++ ++ + +++LDA+ +QD Sbjct: 216 PFTKDGVKFKVVDTAGIRRRGKVYEKTEKYSVLRAVAAIERSDVVLLVLDASTGIREQDK 275 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 + G +++ +NKWD+ ++ + + I +S +TG+ L Sbjct: 276 HVAGYAHEAGRGIIIVVNKWDLPKKNSTSAKEFEREIRAEFQYLDYAPILFVSAKTGQRL 335 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 D + V E+ RI +S LN L + P P I + R+ Y+TQ+ ++PP+F+ Sbjct: 336 DQIPSMVKEVYDNQNQRIQSSVLNDLLLEASKLVPTPMIKGKRLRVYYMTQVSTNPPTFV 395 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 +F P + SY+R+LIN+LR NF +G PI++ + K Sbjct: 396 VFVNDPELMHFSYERFLINQLRQNFDFAGTPIKILPRKRK 435 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 47/175 (26%), Positives = 88/175 (50%), Gaps = 15/175 (8%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + + +++G PNVGKS++ N+L+ + +V N G TRD + +GV F +VDTAGI Sbjct: 174 VISFSVIGRPNVGKSSIVNKLLGEDRVIVANEEGTTRDAVDTPFTKDGVKFKVVDTAGIR 233 Query: 62 DGKNCSIAKQMNDQTEL----AINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIV 117 + + ++ + L AI + ++L ++D+ GI D + + + IIIV Sbjct: 234 --RRGKVYEKTEKYSVLRAVAAIERSDVVLLVLDASTGIREQDKHVAGYAHEAGRGIIIV 291 Query: 118 SNKMD----TRIAQRNF-----YEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 NK D + + F E LD+ I+ +SA+ ++ S++ +++ Sbjct: 292 VNKWDLPKKNSTSAKEFEREIRAEFQYLDYAPILFVSAKTGQRLDQIPSMVKEVY 346 >gi|169634401|ref|YP_001708137.1| GTP-binding protein EngA [Acinetobacter baumannii SDF] gi|254783130|sp|B0VKR4|DER_ACIBS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|169153193|emb|CAP02283.1| putative GTP-binding protein EngA [Acinetobacter baumannii] Length = 469 Score = 249 bits (637), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 152/465 (32%), Positives = 252/465 (54%), Gaps = 33/465 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA++G PNVGKSTLFN++ K + A+V + G+TRDR YG A F +VDT GI + Sbjct: 5 IALIGRPNVGKSTLFNQITKSRDALVADFAGLTRDRKYGDATYQNKSFIVVDTGGIGE-S 63 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I M +Q++ AINEA +I+F++D++AG+ D I LR I +V+NK+D Sbjct: 64 EGGIDNYMAEQSKTAINEADIIIFVVDARAGLLASDEQIARELRTLGKKIYLVANKVDGV 123 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 A+ E Y L E ++++A H G ++ LE + + +E+ Sbjct: 124 HAEAALVEFYKLGLGEPLQVAASHGRGVQQM----------------LEDVLQDIPEDEN 167 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P+E+ G LR+A++GRPNVGKSTL+NRLLG +R++ Q G TRDS+ I Sbjct: 168 PEEHDKDTG----------LRLAIIGRPNVGKSTLVNRLLGEDRVVAFDQPGTTRDSIYI 217 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + + DTAG+R+ ++ E +E+ ++ K++Q+++ +V++DA +QDL Sbjct: 218 PFEREGRKYTLIDTAGVRRKGKVDEMIEKFSIVKTLQAMKDAHVVVVVVDAREGIVEQDL 277 Query: 305 RIVDSVFNTGHAVVLALNKWDMVS--DKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 ++ G A+V+A+NKWD +S D+ D+ + I I+ IS G Sbjct: 278 HLIGYALEAGRAMVIAINKWDNMSEYDRKQCKLDVE----RRFDFIPWARIHLISALHGT 333 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 G+ +L S+ + +++ + L L Q+ PPT+ R +++Y +PP+ Sbjct: 334 GVGELYPSIHRAYESANLKVSPAKLTQILNDATDQHQPPTVQGRRIKMRYAHMGGQNPPT 393 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 +I +K P Y+RYL N R + L G P+++ F++S+NP+ Sbjct: 394 IVIHGNKVDKTPADYRRYLENVFRKVYKLEGTPVKIEFKTSENPF 438 >gi|332291461|ref|YP_004430070.1| ribosome-associated GTPase EngA [Krokinobacter diaphorus 4H-3-7-5] gi|332169547|gb|AEE18802.1| ribosome-associated GTPase EngA [Krokinobacter diaphorus 4H-3-7-5] Length = 435 Score = 249 bits (637), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 142/457 (31%), Positives = 235/457 (51%), Gaps = 28/457 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST FNRLV+++ A+V G+TRDR YG+ NG F ++DT G G Sbjct: 5 VAIVGRPNVGKSTFFNRLVQRREAIVDAVSGVTRDRHYGKTDWNGREFTVIDTGGYVVGS 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +++ Q ELAI+EA I+F++D + G+T D + LR+ PI + NK+D Sbjct: 65 DDVFEAEIDKQVELAIDEADAIIFMVDVEHGVTGMDEEVAKLLRRSKKPIFLAVNKVDNN 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + E Y+L + I+A + GT +L + + L + +E Sbjct: 125 KRAADAVEFYNLGLGDYYTIAATNGSGTGDLLDAVVE---------ALPEQVEEEEKDEL 175 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P R AVVGRPN GKS+ IN L+G +R + +G TRD++ Sbjct: 176 P-------------------RFAVVGRPNAGKSSFINALIGEDRYIVTDIAGTTRDAMDT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 +N + DTAG+R+ +++ E LE +V +S++++ + ++++DAT F+ Q Sbjct: 217 KYNRFGFEFNLVDTAGIRRKAKVKEDLEFYSVMRSVRAIEHADVILLVVDATRGFDGQVQ 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 I +V+ +NKWD+V + N +++ + + D+ I IS + + Sbjct: 277 NIFWLAERNRKGIVILVNKWDLVEKETNTMKNFEKHIRQQIEPFTDVPIVFISVLEKQRI 336 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 + + +++ + RI TS LN + PPP I +Y ++KY Q+ + P F Sbjct: 337 FKAIETAVKVYESKTKRIKTSELNEFFLPLVEAFPPPAIKGKYVKIKYCMQLPTPQPQFA 396 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 +FC P + E Y+R+L N+LR + SG+PI + F+ Sbjct: 397 LFCNLPQYLKEGYRRFLENKLRAAYDFSGVPISIYFR 433 >gi|227431693|ref|ZP_03913723.1| GTP-binding protein EngA [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352517|gb|EEJ42713.1| GTP-binding protein EngA [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 436 Score = 249 bits (637), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 141/461 (30%), Positives = 239/461 (51%), Gaps = 31/461 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST+FNR+ +++A+V + PG+TRDRLY A F ++DT GI G Sbjct: 6 VAIVGRPNVGKSTIFNRMAGERIAIVEDMPGVTRDRLYAPAEWLNYEFRMIDTGGIEIGD 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +A ++ Q ELAINEA +I+ ++ + G+T D + L K + P+++ NK+D Sbjct: 66 APFLA-EIRGQVELAINEADVIVMVVSGREGLTEADEVVARMLYKSDKPVVLAVNKVDNP 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + Y+ Y+L + +S H LG +L I K F Sbjct: 125 EMRHDVYDFYALGLGDPFPVSGSHGLGLGDLLDEIVKHF--------------------- 163 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P E E + +R +++GRPNVGKS+++N +LG R++ G TRD++ Sbjct: 164 PDEAAEQEDDA--------IRFSIIGRPNVGKSSIVNAMLGEKRVIVSDIEGTTRDAIDT 215 Query: 245 SW-NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + + + DTAGMRK +I E+ E+ +V ++M+++ ++++DA +QD Sbjct: 216 RFVTEEGDEFVMVDTAGMRKRGKIYENTEKYSVMRAMKAIDDSNVILMVIDAEAGIREQD 275 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 + G A+++ +NKWD + + D + + I +S +TG+ Sbjct: 276 KHVAGFAHEAGRAMIIVVNKWDAIEKNDRTMSDFENLIREEFKFLDYAPIVFVSAKTGQR 335 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 LD L V +++ + RI +S LN + NP P+ R R+ Y TQ+ + PP+F Sbjct: 336 LDRLPQMVKDVDDNHRKRIISSTLNDVIMDAIAINPTPSDNGRRLRVYYATQVATQPPTF 395 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 +IF + SY+R+L N++R +F +G PI++ ++ K Sbjct: 396 VIFVNDVELMHFSYERFLENKIRESFDFTGTPIKLIVRARK 436 >gi|153809063|ref|ZP_01961731.1| hypothetical protein BACCAC_03371 [Bacteroides caccae ATCC 43185] gi|149128396|gb|EDM19615.1| hypothetical protein BACCAC_03371 [Bacteroides caccae ATCC 43185] Length = 437 Score = 249 bits (637), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 155/454 (34%), Positives = 244/454 (53%), Gaps = 30/454 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNRL K + A+V G TRDR YG++ G F++VDT G Sbjct: 5 VAIVGRPNVGKSTLFNRLTKSRRAIVNEEAGTTRDRQYGKSEWLGREFSVVDTGGWVVNS 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +++ Q LA++EA +ILF++D G+T D + + LR+ N P+I+V+NK D Sbjct: 65 DDIFEEEIRKQVLLAVDEADVILFVVDVMNGVTDLDMQVATILRRANSPVIVVANKTDNN 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 Q N E Y L + ISA GT +L +I FK++ E+++ +E Sbjct: 125 ELQYNAPEFYKLGLGDPYCISAITGSGTGDLMDLIVGKFKKESS----EILD-----DEI 175 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P R AVVGRPN GKS+++N +G +R + +G TRDS+ Sbjct: 176 P-------------------RFAVVGRPNAGKSSIVNAFIGEDRNIVTEIAGTTRDSIYT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 +N + DTAG+RK +++ E LE +V +S++++ + I++LDAT E QDL Sbjct: 217 RYNKFGFDFYLVDTAGIRKKNKVNEDLEYYSVIRSIRAIEGSDVCILMLDATRGIESQDL 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKN-LPQIGDIYINTISGRTGEG 363 I + +V+ +NKWD+V DK +Q +A+++ D I S T + Sbjct: 277 NIFSLIQKNQKGLVVVINKWDLVEDKSVKVQKTFEEAVRSRFAPFVDFPIIFASALTKQR 336 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP-PS 422 + ++ + + T+I T+ LN + PPP+ +Y ++KYITQ+ ++ PS Sbjct: 337 ILKVLEEARNVYENRTTKIPTARLNEEMLPLIEAYPPPSNKGKYIKIKYITQLPNTQVPS 396 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 F+ F P + E YKR+L N++R ++L+G PI Sbjct: 397 FVYFANLPQYVKEPYKRFLENKMREKWNLTGTPI 430 >gi|225572013|ref|ZP_03780877.1| hypothetical protein RUMHYD_00307 [Blautia hydrogenotrophica DSM 10507] gi|225040546|gb|EEG50792.1| hypothetical protein RUMHYD_00307 [Blautia hydrogenotrophica DSM 10507] Length = 441 Score = 249 bits (637), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 150/461 (32%), Positives = 233/461 (50%), Gaps = 33/461 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFN L + +++V + PG+TRDR+Y + F ++DT GI Sbjct: 6 VAIVGRPNVGKSTLFNVLAGENISIVKDTPGVTRDRIYAEVTWLDKSFTMIDTGGIEPDS 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 N I QM +Q ++AI+ A +I+FL+D + G+ D + LR+ P+++V NK+D+ Sbjct: 66 NDIILSQMREQAQIAIDTADVIVFLVDVRQGMVDADAKVADMLRRSTKPVVLVVNKVDSF 125 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + YE Y+L E + +SA LG ++ I K F P H E +E Sbjct: 126 EKFMMDVYEFYNLGIGEPIPVSASSRLGLGDMLDEIVKHF----PEHAGE-----DEEDE 176 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 PK IAVVG+PNVGKS+LIN+L+G R++ +G TRD++ Sbjct: 177 IPK-------------------IAVVGKPNVGKSSLINKLVGEERVIVSDIAGTTRDAID 217 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 W+ DTAG+R+ +I E +E+ +V +++ +V ++++D +QD Sbjct: 218 TKVKWQGREYVFIDTAGLRRKGKIKEEIERYSVIRTVTAVERANVVVIMIDGVEGVTEQD 277 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 +I G V++A+NKWD V + K L + + IS +TG Sbjct: 278 AKIAGIAHEKGKGVIIAVNKWDAVEKNDKTIYRYTDKIRNTLAYMPYAELIFISAKTGLR 337 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLK--YITQIQSSPP 421 L L ++ + + RI T LN L + PP+ +R RLK Y+TQ+ PP Sbjct: 338 LQRLFETIDMVVENQTLRIQTGVLNEILTEAMAMQQPPS--DRGKRLKIFYMTQVSVRPP 395 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 +F+IF + SY RYL NR+R F G P++ + Sbjct: 396 TFVIFVNDKELMHFSYTRYLENRIREAFGFRGTPLKFIVRE 436 >gi|302342246|ref|YP_003806775.1| ribosome-associated GTPase EngA [Desulfarculus baarsii DSM 2075] gi|301638859|gb|ADK84181.1| ribosome-associated GTPase EngA [Desulfarculus baarsii DSM 2075] Length = 479 Score = 249 bits (637), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 143/477 (29%), Positives = 249/477 (52%), Gaps = 25/477 (5%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +AIVG PNVGKSTLFNRL + + A+V + PG+TRDRLYG+AII+ ++DT G Sbjct: 1 MSAIMAIVGRPNVGKSTLFNRLTRTRQALVHDLPGVTRDRLYGRAIIDDRQVTVIDTGGF 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + A +++ Q +A+ EA LILF+ D +AG+ P D I + LR+ P+I NK Sbjct: 61 DPPADQPFAAEVHAQIAMAMEEADLILFVCDGRAGLNPADLEIATRLRRSQKPVIHAVNK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPL-EMIENN- 178 +D + E ++L +++ ISA H G S+L I P+ L E +E Sbjct: 121 IDGPRQEDEASEFFALGVEKLHFISAAHGYGMSDLAD---DILAHLPPDDELTERLETPG 177 Query: 179 ----------KRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNR 228 +E P++ + +V I R+A++GRPNVGKS+L+N L G R Sbjct: 178 GAVFLSPSRLAERDEPPEDEDIDPKRLAVDEI----RVALIGRPNVGKSSLLNALFGGPR 233 Query: 229 LLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCET 288 ++ G TRD+V + I DTAG+R+ ++ +E+ V +S++++ Sbjct: 234 VVVSDVPGTTRDAVDTPIQVGDKKYVIIDTAGIRRRGKVAPGIEKAGVFRSLRAIDRAHV 293 Query: 289 TIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTK---AIKNL 345 + +++A QDL ++ + A+++ +NKWD+++ + L + A++ Sbjct: 294 VVAMMEAGEGVTDQDLHLIGAAMEQNRALIVVMNKWDLLAGDERRRKQLDARLEEALRFA 353 Query: 346 PQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFN 405 P + ++ + GR G+D ++ V +I + +R+ T LN L++ Q+++ PP++ + Sbjct: 354 PWAPVLRLSVLKGR---GVDKILPLVDQIFAQYNSRLGTGRLNQVLEQAQIKHTPPSVGS 410 Query: 406 RYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 R ++ Y Q+ PP+ + P + SY+R+L N R L P+++ + Sbjct: 411 RRLKIYYAAQVAVRPPTVALVVNDPKAVHFSYRRFLTNEFRKAMGLEQSPLKLILRG 467 >gi|197294798|ref|YP_001799339.1| GTP-binding protein EngA [Candidatus Phytoplasma australiense] gi|171854125|emb|CAM12114.1| GTP-binding protein [Candidatus Phytoplasma australiense] Length = 439 Score = 249 bits (637), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 147/461 (31%), Positives = 242/461 (52%), Gaps = 26/461 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKS+LFNRL+ K+ A+ + GITRDR+Y QA F+++DT GI + + Sbjct: 4 IAIVGRPNVGKSSLFNRLIGKRQAITHHKEGITRDRIYAQANWLTRTFDVIDTGGI-EFQ 62 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +Q+ Q +LAI+EA +I+F++D K G+T DH + L + +++V NK+D Sbjct: 63 AIPFLEQIKQQAQLAIDEADVIIFVVDGKTGLTQSDHYLAKILYQTKKKVLLVVNKIDNH 122 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 N YE Y+L F + +SA H +G +L I IF + L+ EN N Sbjct: 123 DLLSNIYEFYALGFDAPLPVSALHGVGVGDLLDKI--IFHLDFSKPSLQATENETDN--- 177 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 ++ ++GRPNVGKSTL N LL R++ +G T D++ Sbjct: 178 ------------------VIKFCIIGRPNVGKSTLTNSLLFSQRMVVSDIAGTTTDAIDT 219 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + +I DTAG++K +I E ++ +V +++Q++ C+ +++DA +QD Sbjct: 220 FFINEGQKYQIIDTAGIKKRGKIYEQEDKYSVLRALQTLANCDIACLVIDAQAGILEQDK 279 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 I + + ++ +NKWD++S + N ++ + + + D I +S L Sbjct: 280 NIAGLILEHHKSYIIIVNKWDLISKETNTMKKFEDQIRQEFKFLPDAPIIFLSAFKKNRL 339 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNR-YNRLKYITQIQSSPPSF 423 L + ++ + +++ +T LN LQ+ + PPT FN+ + +YI QI+S P F Sbjct: 340 QSLFPILKKVFQNYQSNFSTHLLNDILQEATIIT-PPTCFNQGIAKFRYIFQIKSKSPEF 398 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 L F P I SY+R+L N+ R SL G P+++ F K Sbjct: 399 LCFVNDPKYIHFSYERFLKNQFRQKLSLEGTPLKIVFHKKK 439 Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 41/122 (33%), Positives = 66/122 (54%), Gaps = 5/122 (4%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP 264 +IA+VGRPNVGKS+L NRL+G + +T + GITRD + NW ++ DT G+ Sbjct: 3 KIAIVGRPNVGKSSLFNRLIGKRQAITHHKEGITRDRIYAQANWLTRTFDVIDTGGIE-- 60 Query: 265 SRITESLEQKTVKKSMQ-SVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 + LEQ +K+ Q ++ + I ++D + D + ++ T V+L +NK Sbjct: 61 FQAIPFLEQ--IKQQAQLAIDEADVIIFVVDGKTGLTQSDHYLAKILYQTKKKVLLVVNK 118 Query: 324 WD 325 D Sbjct: 119 ID 120 >gi|291460309|ref|ZP_06599699.1| ribosome-associated GTPase EngA [Oribacterium sp. oral taxon 078 str. F0262] gi|291417064|gb|EFE90783.1| ribosome-associated GTPase EngA [Oribacterium sp. oral taxon 078 str. F0262] Length = 441 Score = 249 bits (636), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 151/459 (32%), Positives = 238/459 (51%), Gaps = 29/459 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTLFN + K++++V + PG+TRDR+Y F +VDT GI Sbjct: 6 VAVVGRPNVGKSTLFNVIAGKQISIVKDTPGVTRDRIYADCEWLNHPFTLVDTGGIEPDS 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + QM Q ELAI A +ILF++D ++G+T D+A+ LRK + PI++ NK+D+ Sbjct: 66 RDVLLSQMRSQAELAIETADVILFVVDVRSGVTDADYAVAELLRKSHKPIVLCVNKVDSF 125 Query: 125 IAQRN-FYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 N YE Y L + +S+ + LG +L + K F P E E+++ Sbjct: 126 QKLGNEIYEFYQLGLGDPFGVSSVNQLGLGDLLDELLKHF----PKGLEEEAEDDR---- 177 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 +R+A++G+PNVGKS++IN+LLG NR++ +G TRD++ Sbjct: 178 --------------------IRVALIGKPNVGKSSMINKLLGENRVIVSEIAGTTRDAID 217 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 DTAG+R+ R+T+ +E+ +V +++ +V + +VL+DA +QD Sbjct: 218 TEIVHDGERYIFIDTAGLRRKGRVTDEIERYSVIRTVSAVDRADICVVLIDAIEGITEQD 277 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 + I +G V++A+NKWD V ++D K + L + +S +TG+ Sbjct: 278 VHIAGIAHESGKGVIIAVNKWDAVEKDDRTMRDFTKKLREKLSYMDYAEYLFLSAKTGQR 337 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 L L + +++ R+ T LN L K PP+ + RL YITQ+ PPSF Sbjct: 338 LTKLFPLIDMVHQNQMLRVKTGLLNEILMKAAAMKQPPSDKGKRLRLFYITQVSVRPPSF 397 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 +IF + SY RYL NR+R F G P+R + Sbjct: 398 VIFVNDRELMHFSYTRYLENRIREAFGFRGTPLRFIIRE 436 >gi|262371080|ref|ZP_06064402.1| GTPase [Acinetobacter johnsonii SH046] gi|262313966|gb|EEY95011.1| GTPase [Acinetobacter johnsonii SH046] Length = 469 Score = 249 bits (636), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 149/467 (31%), Positives = 247/467 (52%), Gaps = 37/467 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA++G PNVGKSTLFN++ K + A+V + G+TRDR YG A+ F +VDT GI + Sbjct: 5 IALIGRPNVGKSTLFNQITKSRDALVADFAGLTRDRKYGDAVFQNKSFIVVDTGGIGE-N 63 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I M +Q++ AINEA +I+F++D++AG+ D I LR + +V+NK+D Sbjct: 64 EGGIDSYMAEQSKTAINEADIIVFVVDARAGLLASDEQIARELRTLGKKVYLVANKVDGV 123 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 A+ E Y L E ++++A H G ++ LE + ++ +E Sbjct: 124 HAEAALVEFYKLGMGEPMQVAASHGRGVQQM----------------LEDVLSSVPEDED 167 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 E+ + G LR+A++GRPNVGKSTL+NRLLG R++ Q G TRDS+ I Sbjct: 168 ADEHDKNTG----------LRLAIIGRPNVGKSTLVNRLLGEERVVAFDQPGTTRDSIYI 217 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + DTAG+R+ ++ E +E+ ++ K++Q+++ +V+LDA +QDL Sbjct: 218 PYERDGRQYTLIDTAGVRRKGKVDEMIEKFSIVKTLQAIKDAHVIVVVLDAREGVVEQDL 277 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSD----KLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 ++ G A+V+A+NKWD +S+ + L D R I ++ IS Sbjct: 278 HLIGYALEAGRAMVIAINKWDNMSEYDRKQCKLDVDRRFDFIPWAK------VHLISALH 331 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G G+ DL S+ +++ + + L + PP + R +++Y +P Sbjct: 332 GTGVGDLYPSIHRAYDSSHLKVSPAKITQILSDATDAHQPPMVGGRRIKMRYAHMGGQNP 391 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 P+ ++ +K P Y+RYL N R + L G P+R+ F++S+NP+ Sbjct: 392 PTIVVHGNKVDKTPADYRRYLENVFRKVYKLEGTPVRIEFKTSENPF 438 >gi|71908594|ref|YP_286181.1| GTP-binding protein EngA [Dechloromonas aromatica RCB] gi|123760409|sp|Q47BS0|DER_DECAR RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|71848215|gb|AAZ47711.1| Small GTP-binding protein protein domain:GTP-binding protein [Dechloromonas aromatica RCB] Length = 443 Score = 249 bits (636), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 159/475 (33%), Positives = 243/475 (51%), Gaps = 40/475 (8%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M T+ +VG PNVGKSTLFNRL K + A+V + PG+TRDR YG + + +VDT G Sbjct: 1 MKPTLVLVGRPNVGKSTLFNRLTKSRDAIVADMPGLTRDRHYGHGKLGKKPYLVVDTGGF 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 I +M QTE AI EA I+F++D ++G+TP+D I + LR+ + P+ + NK Sbjct: 61 EPLVKEGILHEMARQTEQAIAEADAIIFVVDGRSGLTPHDKEIANKLRRIDRPVFVAVNK 120 Query: 121 ---MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 M++ + + F+E L E ISA H G L + + F + Sbjct: 121 AEGMNSGMVEAEFHE---LGLGEPNAISAAHGEGIRGLVEMALESFPE------------ 165 Query: 178 NKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGI 237 P+E+ + S +R+A+VGRPNVGKSTLIN LLG R++ G Sbjct: 166 -------PEED---------EWHSDSVRVAIVGRPNVGKSTLINTLLGEERVIAFDAPGT 209 Query: 238 TRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATI 297 TRDS+ I + + DTAGMRK ++ ES+E+ +V K++QS+ I+++DA Sbjct: 210 TRDSIEIDFERGGRKYVLVDTAGMRKRGKVFESIEKFSVVKTLQSIEDANVVILMVDAQA 269 Query: 298 PFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAI--KNLPQIGDIYINT 355 QD I D + +G A+V+A+NKW D L+ +T+ I + L + + Sbjct: 270 DVSDQDAHIADFILQSGRALVVAVNKW----DGLDAYTREQTRQILQRKLKFLDFAKFHF 325 Query: 356 ISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQ 415 IS R GL ++ SV ++TT L L + P + +Y Q Sbjct: 326 ISARDNIGLGNMFRSVDSAYAAAMAKMTTPRLTRVLIDAVAKQAPAKHGLFRPKPRYAHQ 385 Query: 416 IQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 S+PP ++ +++ +SY+RYL + R F L G P+R+ F ++KNP+ K Sbjct: 386 GGSNPPIIVVHGNAVDQVTDSYRRYLEHTFREAFKLQGTPLRIQFVTAKNPFADK 440 >gi|319651358|ref|ZP_08005487.1| GTP-binding protein EngA [Bacillus sp. 2_A_57_CT2] gi|317396889|gb|EFV77598.1| GTP-binding protein EngA [Bacillus sp. 2_A_57_CT2] Length = 436 Score = 249 bits (636), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 147/461 (31%), Positives = 238/461 (51%), Gaps = 29/461 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 +AIVG PNVGKST+FNR+V +++++V + PG+TRDR+Y A FNI+DT GI G Sbjct: 5 VVAIVGRPNVGKSTIFNRIVGERISIVEDIPGVTRDRIYSSAEWLTHDFNIIDTGGIDIG 64 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + +Q+ Q E+AI+EA +I+FL++ + G+T D + L K P+++ NK+D Sbjct: 65 DEPFL-EQIRLQAEIAIDEADVIIFLVNGREGVTSADEEVAKILYKAKKPVVLGVNKIDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + Y+ Y+L F E IS H LG +L K F Sbjct: 124 PEMRDLVYDFYALGFGEPFPISGSHGLGLGDLLDEAAKHF-------------------- 163 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 PK T G+ +K +++GRPNVGKS+L+N +LG R++ + +G TRD++ Sbjct: 164 -PKHGQTEYGEDVIK-------FSLIGRPNVGKSSLVNAMLGEERVIVSNIAGTTRDAID 215 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 I DTAGMRK ++ E+ E+ +V ++++++ + +V++D +QD Sbjct: 216 SKVKVDGQEYVIIDTAGMRKKGKVYETTEKYSVLRALRAIERSDVVLVVIDGEEGIIEQD 275 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 RI G AVV+ +NKWD V ++ ++ + I +S +T + Sbjct: 276 KRIAGYAHEAGRAVVIVVNKWDAVEKDERTMKAFEQNIREHFQFLDYAPIVFLSAKTKKR 335 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 + L+ + ++ R+ TS LN + NP PT R R+ Y TQ+ PP+F Sbjct: 336 IHTLIPMINTASENHALRVETSVLNDVVMDAVAMNPTPTDKGRRLRIYYTTQVAVKPPTF 395 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 ++F P + SY+R+L NR+R F G PI++ + K Sbjct: 396 VVFVNDPELLHFSYERFLENRIRDAFGFEGTPIKIFARERK 436 >gi|169797239|ref|YP_001715032.1| GTP-binding protein EngA [Acinetobacter baumannii AYE] gi|184156836|ref|YP_001845175.1| GTP-binding protein EngA [Acinetobacter baumannii ACICU] gi|215484680|ref|YP_002326915.1| small GTP-binding domain protein [Acinetobacter baumannii AB307-0294] gi|260556121|ref|ZP_05828340.1| ribosome-associated GTPase EngA [Acinetobacter baumannii ATCC 19606] gi|301509976|ref|ZP_07235213.1| GTP-binding protein EngA [Acinetobacter baumannii AB058] gi|332851256|ref|ZP_08433329.1| ribosome biogenesis GTPase Der [Acinetobacter baumannii 6013150] gi|332866125|ref|ZP_08436840.1| ribosome biogenesis GTPase Der [Acinetobacter baumannii 6013113] gi|332873250|ref|ZP_08441207.1| ribosome biogenesis GTPase Der [Acinetobacter baumannii 6014059] gi|254783127|sp|B7H065|DER_ACIB3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|254783129|sp|B2I3F0|DER_ACIBC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|254783131|sp|B0V4V6|DER_ACIBY RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|254783285|sp|A3M215|DER_ACIBT RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|169150166|emb|CAM88060.1| putative GTP-binding protein EngA [Acinetobacter baumannii AYE] gi|183208430|gb|ACC55828.1| predicted GTPase [Acinetobacter baumannii ACICU] gi|193076314|gb|ABO10959.2| putative GTP-binding protein EngA [Acinetobacter baumannii ATCC 17978] gi|213986103|gb|ACJ56402.1| small GTP-binding domain protein [Acinetobacter baumannii AB307-0294] gi|260410176|gb|EEX03475.1| ribosome-associated GTPase EngA [Acinetobacter baumannii ATCC 19606] gi|322506727|gb|ADX02181.1| engA [Acinetobacter baumannii 1656-2] gi|323516601|gb|ADX90982.1| GTP-binding protein EngA [Acinetobacter baumannii TCDC-AB0715] gi|332730136|gb|EGJ61463.1| ribosome biogenesis GTPase Der [Acinetobacter baumannii 6013150] gi|332734766|gb|EGJ65860.1| ribosome biogenesis GTPase Der [Acinetobacter baumannii 6013113] gi|332738762|gb|EGJ69632.1| ribosome biogenesis GTPase Der [Acinetobacter baumannii 6014059] Length = 469 Score = 249 bits (636), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 152/465 (32%), Positives = 252/465 (54%), Gaps = 33/465 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA++G PNVGKSTLFN++ K + A+V + G+TRDR YG A F +VDT GI + Sbjct: 5 IALIGRPNVGKSTLFNQITKSRDALVADFAGLTRDRKYGDATYQNKSFIVVDTGGIGE-S 63 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I M +Q++ AINEA +I+F++D++AG+ D I LR I +V+NK+D Sbjct: 64 EGGIDNYMAEQSKTAINEADIIIFVVDARAGLLASDEQIARELRTLGKKIYLVANKVDGV 123 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 A+ E Y L E ++++A H G ++ LE + + +E+ Sbjct: 124 HAEAALVEFYKLGMGEPLQVAASHGRGVQQM----------------LEDVLQDIPEDEN 167 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P+E+ G LR+A++GRPNVGKSTL+NRLLG +R++ Q G TRDS+ I Sbjct: 168 PEEHDKDTG----------LRLAIIGRPNVGKSTLVNRLLGEDRVVAFDQPGTTRDSIYI 217 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + + DTAG+R+ ++ E +E+ ++ K++Q+++ +V++DA +QDL Sbjct: 218 PFEREGRKYTLIDTAGVRRKGKVDEMIEKFSIVKTLQAMKDAHVVVVVVDAREGIVEQDL 277 Query: 305 RIVDSVFNTGHAVVLALNKWDMVS--DKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 ++ G A+V+A+NKWD +S D+ D+ + I I+ IS G Sbjct: 278 HLIGYALEAGRAMVIAINKWDNMSEYDRKQCKLDVE----RRFDFIPWARIHLISALHGT 333 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 G+ +L S+ + +++ + L L Q+ PPT+ R +++Y +PP+ Sbjct: 334 GVGELYPSIHRAYESANLKVSPAKLTQILNDATDQHQPPTVQGRRIKMRYAHMGGQNPPT 393 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 +I +K P Y+RYL N R + L G P+++ F++S+NP+ Sbjct: 394 IVIHGNKVDKTPADYRRYLENVFRKVYKLEGTPVKIEFKTSENPF 438 >gi|319900091|ref|YP_004159819.1| ribosome-associated GTPase EngA [Bacteroides helcogenes P 36-108] gi|319415122|gb|ADV42233.1| ribosome-associated GTPase EngA [Bacteroides helcogenes P 36-108] Length = 437 Score = 249 bits (636), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 153/454 (33%), Positives = 237/454 (52%), Gaps = 30/454 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNRL K + A+V G TRDR YG+ G F++VDT G Sbjct: 5 VAIVGRPNVGKSTLFNRLTKTRQAIVNEEAGTTRDRQYGKTEWLGREFSVVDTGGWVVNS 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +++ Q +A++EA +ILF++D G+T D + + LR+ P+++++NK D Sbjct: 65 DDVFEEEIRKQVLMALDEADVILFVVDVMNGVTDLDLQVATILRRSKKPVLLIANKTDNN 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 Q N E YSL + +SA GT ++ +I FK K +E Sbjct: 125 ELQYNAPEFYSLGLGDPYCVSAITGSGTGDMMDLIVSKFK--------------KETDEI 170 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 E+I R AVVGRPN GKS+++N +G +R + +G TRDS+ Sbjct: 171 LDEDIP--------------RFAVVGRPNAGKSSIVNAFIGEDRNIVTEIAGTTRDSIYT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 +N + DTAG+RK +++ E LE +V +S++S+ + I++LDAT E QDL Sbjct: 217 RYNKFGFDFYLVDTAGIRKKNKVNEDLEYYSVIRSIRSIENSDVCILMLDATRGIESQDL 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKN-LPQIGDIYINTISGRTGEG 363 I + +V+ +NKWD+V DK + AI+N D I S T + Sbjct: 277 NIFSLIQKNAKGLVVVVNKWDLVEDKTAKVMKTFEDAIRNRFAPFVDFPIIFASALTKQR 336 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP-PS 422 + ++ + + RI T+ LN + PPP I +Y ++KYITQ+ ++ PS Sbjct: 337 ILKVLEQARNVYENRMVRIPTARLNEEMLPLIEAYPPPAIKGKYIKIKYITQLPNTQVPS 396 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 F+ F P + E Y+R+L N++R ++L+G PI Sbjct: 397 FVYFANLPQYVKEPYRRFLENKMREKWNLTGTPI 430 >gi|160882378|ref|ZP_02063381.1| hypothetical protein BACOVA_00327 [Bacteroides ovatus ATCC 8483] gi|237719052|ref|ZP_04549533.1| GTP-binding protein EngA [Bacteroides sp. 2_2_4] gi|260172013|ref|ZP_05758425.1| GTP-binding protein EngA [Bacteroides sp. D2] gi|299148136|ref|ZP_07041198.1| ribosome-associated GTPase EngA [Bacteroides sp. 3_1_23] gi|315920326|ref|ZP_07916566.1| conserved hypothetical protein [Bacteroides sp. D2] gi|156112191|gb|EDO13936.1| hypothetical protein BACOVA_00327 [Bacteroides ovatus ATCC 8483] gi|229451431|gb|EEO57222.1| GTP-binding protein EngA [Bacteroides sp. 2_2_4] gi|298512897|gb|EFI36784.1| ribosome-associated GTPase EngA [Bacteroides sp. 3_1_23] gi|313694201|gb|EFS31036.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 437 Score = 249 bits (636), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 154/454 (33%), Positives = 239/454 (52%), Gaps = 30/454 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNRL K + A+V G TRDR YG++ G F++VDT G Sbjct: 5 VAIVGRPNVGKSTLFNRLTKTRQAIVNEEAGTTRDRQYGKSEWLGREFSVVDTGGWVVNS 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +++ Q LA+ EA +ILF++D G+T D + + LR+ N P+I+V+NK D Sbjct: 65 DDVFEEEIRKQVLLAVEEADVILFVVDVMNGVTDLDMQVAAILRRANSPVIMVANKTDNH 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 Q N E Y L + +SA GT +L +I FK K + E Sbjct: 125 DLQYNAPEFYKLGLGDPYCVSAMTGSGTGDLMDLIVSNFK--------------KESSEI 170 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 ++I R AVVGRPN GKS+++N +G R + +G TRDS+ Sbjct: 171 LDDDIP--------------RFAVVGRPNAGKSSIVNAFIGEERNIVTEIAGTTRDSIYT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 +N + DTAG+RK +++ E LE +V +S++S+ + I++LDAT E QDL Sbjct: 217 RYNKFGFDFYLVDTAGIRKKNKVNEDLEYYSVVRSIRSIEGSDVCILMLDATRGVEGQDL 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKN-LPQIGDIYINTISGRTGEG 363 I + +V+ +NKWD+V DK +Q +A+++ D I S T + Sbjct: 277 NIFSLIQKNQKGLVVVINKWDLVEDKSVKVQKAFEEAVRSRFAPFVDFPIIFASALTKQR 336 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP-PS 422 + ++ + + T+I T+ LN + PPP+ +Y ++KYITQ+ ++ PS Sbjct: 337 ILKVLEEARSVYENRTTKIPTARLNEEMLPLIEAYPPPSNKGKYIKIKYITQLPNTQVPS 396 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 F+ F P + E YKR+L N++R ++L+G P+ Sbjct: 397 FVYFANLPQYVKEPYKRFLENKMREKWNLTGTPV 430 >gi|323466656|gb|ADX70343.1| GTP-binding protein engA [Lactobacillus helveticus H10] Length = 435 Score = 249 bits (636), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 139/460 (30%), Positives = 241/460 (52%), Gaps = 30/460 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNR++ +++A+V + PG+TRDR Y QA G F+++DT GI + Sbjct: 6 VAIVGQPNVGKSTLFNRIINQRLAIVEDKPGVTRDRNYAQAEWMGHKFDLIDTGGIT-WE 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I +++ Q E+AI EA +I+ L + +T D I L + P+I+ NK D Sbjct: 65 GGKIEEEIRAQAEIAIEEADVIVMLTNVVNHVTDLDERIAHLLYRTKKPVILAVNKADNP 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + Y+ YSL + + +S+ H G +L I F Sbjct: 125 EQRNDIYDFYSLGLGDPIPVSSSHGTGIGDLLDEIVSDF--------------------- 163 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 +E S ++ + +V+GRPNVGKS+++N+LLG +R++ ++ G TRD+V Sbjct: 164 -----PAEKDSQANDV---ISFSVIGRPNVGKSSVVNKLLGEDRVIVANEEGTTRDAVDT 215 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + ++ DTAG+R+ ++ E E+ +V +++ ++ + +++LDA+ +QD Sbjct: 216 PFTKDGVKFKVVDTAGIRRRGKVYEKTEKYSVLRAVAAIERSDVVLLVLDASTGIREQDK 275 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 + G +++ +NKWD+ ++ + + I +S +TG+ L Sbjct: 276 HVAGYAHEAGRGIIIVVNKWDLPKKNSTSAKEFEREIRAEFQYLDYAPILFVSAKTGQRL 335 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 D + V E+ RI +S LN L + P P I + R+ Y+TQ+ ++PP+F+ Sbjct: 336 DQIPSMVKEVYDNQNQRIQSSVLNDLLLEASKLVPTPMIKGKRLRVYYMTQVSTNPPTFV 395 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 +F P + SY+R+LIN+LR NF +G PI++ + K Sbjct: 396 VFVNDPELMHFSYERFLINQLRQNFDFAGTPIKILPRKRK 435 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 47/175 (26%), Positives = 88/175 (50%), Gaps = 15/175 (8%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + + +++G PNVGKS++ N+L+ + +V N G TRD + +GV F +VDTAGI Sbjct: 174 VISFSVIGRPNVGKSSVVNKLLGEDRVIVANEEGTTRDAVDTPFTKDGVKFKVVDTAGIR 233 Query: 62 DGKNCSIAKQMNDQTEL----AINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIV 117 + + ++ + L AI + ++L ++D+ GI D + + + IIIV Sbjct: 234 --RRGKVYEKTEKYSVLRAVAAIERSDVVLLVLDASTGIREQDKHVAGYAHEAGRGIIIV 291 Query: 118 SNKMD----TRIAQRNF-----YEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 NK D + + F E LD+ I+ +SA+ ++ S++ +++ Sbjct: 292 VNKWDLPKKNSTSAKEFEREIRAEFQYLDYAPILFVSAKTGQRLDQIPSMVKEVY 346 >gi|295398957|ref|ZP_06808939.1| ribosome-associated GTPase EngA [Geobacillus thermoglucosidasius C56-YS93] gi|294978423|gb|EFG54019.1| ribosome-associated GTPase EngA [Geobacillus thermoglucosidasius C56-YS93] Length = 436 Score = 249 bits (636), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 142/461 (30%), Positives = 241/461 (52%), Gaps = 29/461 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 +AIVG PNVGKST+FNR+V +++++V + PG+TRDR+Y A F ++DT GI G Sbjct: 5 VVAIVGRPNVGKSTIFNRIVGERISIVEDVPGVTRDRIYSSAEWLNHKFYLIDTGGIDIG 64 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + Q+ Q E+AI+EA +I+F+ + + G+T D + L + N P+++ NK+D Sbjct: 65 DEPLLV-QIRQQAEIAIDEADVIIFMTNGRDGVTAADEEVAKILHRSNKPVVLAVNKIDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + Y+ Y+L F + IS H G +L + + F KR +E Sbjct: 124 PEMRDLIYDFYALGFGDPYPISGAHGTGLGDLLDAVARHFP--------------KRGQE 169 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 +E++ ++ ++GRPNVGKS+L+N +LG R++ +G TRD+V Sbjct: 170 EYEEDV--------------IKFCLIGRPNVGKSSLVNAILGEERVIVSDIAGTTRDAVD 215 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 ++ + I DTAGMRK +I E+ E+ +V ++++++ + +V+L+A +QD Sbjct: 216 TTFVREGQEYVIIDTAGMRKRGKIYENTEKYSVLRALKAIERSDVVLVVLNAEEGIIEQD 275 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 +I G V++ +NKWD + L + K + P + I +S +T + Sbjct: 276 KKIAGYAHEAGRGVIIVVNKWDAIEKDDKTLIEFERKIRDHFPFLDYAPIIFVSAKTKQR 335 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 L L+ V +++ R+ T+ LN + NP PT R ++ Y+TQ+ PP+F Sbjct: 336 LHKLLPLVRMVSENHAMRVQTNVLNEVIMDAVAMNPTPTHNGRRLKIYYMTQVAVKPPTF 395 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 + F P + SY+R+L NR+R F G PI + + K Sbjct: 396 VAFVNDPELMHFSYERFLENRIRDAFGFEGTPITIIARPRK 436 >gi|229096095|ref|ZP_04227068.1| GTP-binding protein engA [Bacillus cereus Rock3-29] gi|229102207|ref|ZP_04232916.1| GTP-binding protein engA [Bacillus cereus Rock3-28] gi|229115051|ref|ZP_04244461.1| GTP-binding protein engA [Bacillus cereus Rock1-3] gi|228668191|gb|EEL23623.1| GTP-binding protein engA [Bacillus cereus Rock1-3] gi|228681108|gb|EEL35276.1| GTP-binding protein engA [Bacillus cereus Rock3-28] gi|228687055|gb|EEL40960.1| GTP-binding protein engA [Bacillus cereus Rock3-29] Length = 436 Score = 249 bits (636), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 146/458 (31%), Positives = 239/458 (52%), Gaps = 29/458 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKST+FNR+V +++++V + PGITRDR+Y FNI+DT GI G Sbjct: 6 IAIVGRPNVGKSTIFNRIVGERVSIVEDIPGITRDRIYSAGEWLNHEFNIIDTGGIDIGD 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + Q+ Q E+AI+EA +I+F+ + + G+T D + L + PI++ NK+D Sbjct: 66 EPFLT-QIRQQAEVAIDEADVIIFMTNGRDGVTAADEEVAKILYRSKKPIVLAVNKVDNP 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + Y+ Y+L F E IS H LG +L + NH IE ++E+ Sbjct: 125 EMRSDIYDFYALGFGEPFPISGTHGLGLGDL--------LDEAANH-FPKIEEEAYDDET 175 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 +R +++GRPNVGKS+L+N LLG R++ + +G TRD+V Sbjct: 176 -------------------IRFSLIGRPNVGKSSLVNALLGQERVIVSNIAGTTRDAVDT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 ++ I DTAGMRK ++ ES E+ +V ++++++ + +V+LD +QD Sbjct: 217 PYSKDGQDYVIIDTAGMRKKGKVYESTEKYSVLRALRAIERSDVVLVVLDGEEGIIEQDK 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 +I ++G AV++ +NKWD V ++ + + I +S +T + Sbjct: 277 KIAGYAHDSGRAVIIVVNKWDAVKKDEKTMKAFEENIRAHFQFLDYAPIVFLSAKTKKRT 336 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 L+ + E+N+ R+ T+ LN + NP PT ++ Y TQ+ PP+F+ Sbjct: 337 QTLLPVINEVNESHSIRVQTNVLNDVIMDAVAMNPTPTHNGSRLKIFYATQVAVKPPTFV 396 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 +F + SY+R+L NRLR F G PI + ++ Sbjct: 397 VFVNDTELMHFSYERFLKNRLREAFGFVGTPIHIIARA 434 >gi|29349244|ref|NP_812747.1| GTP-binding protein EngA [Bacteroides thetaiotaomicron VPI-5482] gi|253573091|ref|ZP_04850482.1| GTP-binding protein engA [Bacteroides sp. 1_1_6] gi|298384785|ref|ZP_06994344.1| ribosome-associated GTPase EngA [Bacteroides sp. 1_1_14] gi|37999664|sp|Q8A135|DER_BACTN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|29341152|gb|AAO78941.1| putative phosphoglycerate dehydrogenase [Bacteroides thetaiotaomicron VPI-5482] gi|251837314|gb|EES65414.1| GTP-binding protein engA [Bacteroides sp. 1_1_6] gi|298261929|gb|EFI04794.1| ribosome-associated GTPase EngA [Bacteroides sp. 1_1_14] Length = 437 Score = 249 bits (636), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 153/454 (33%), Positives = 237/454 (52%), Gaps = 30/454 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNRL K + A+V G TRDR YG++ G F++VDT G Sbjct: 5 VAIVGRPNVGKSTLFNRLTKTRQAIVNEEAGTTRDRQYGKSEWLGREFSVVDTGGWVVNS 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +++ Q LA+ EA +ILF++D G+T D + + LR+ N P+I+V+NK D Sbjct: 65 DDIFEEEIRKQVLLAVEEADVILFVVDVMNGVTDLDMQVATILRRANSPVIMVANKTDNN 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 Q N E Y L + ISA GT +L +I F NK E Sbjct: 125 ELQYNAPEFYKLGLGDPYCISAITGSGTGDLMDLIVSKF--------------NKETSEI 170 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 ++I R AVVGRPN GKS+++N +G +R + +G TRDS+ Sbjct: 171 LDDDIP--------------RFAVVGRPNAGKSSIVNAFIGEDRNIVTEIAGTTRDSIYT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 +N + DTAG+RK +++ E LE +V +S++S+ + I++LDAT E QDL Sbjct: 217 RYNKFGFDFYLVDTAGIRKKNKVNEDLEYYSVVRSIRSIENADVCILMLDATRGVESQDL 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDK-LNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 I+ + +V+ +NKWD++ DK ++++ D I S T + Sbjct: 277 NILSLIQKNQKGLVVVINKWDLIEDKTAKMMKEFEATIRSRFAPFVDFPIIFASALTKQR 336 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP-PS 422 + ++ + + T+I T+ LN + PPP+ +Y ++KYITQ+ ++ PS Sbjct: 337 ILKVLEEARNVYENRTTKIPTARLNEEMLPLIEAYPPPSNKGKYIKIKYITQLPNTQVPS 396 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 F+ F P + E YKR+L N++R ++L+G PI Sbjct: 397 FVYFANLPQYVKEPYKRFLENKMREKWNLTGTPI 430 >gi|121997392|ref|YP_001002179.1| GTP-binding protein EngA [Halorhodospira halophila SL1] gi|166198720|sp|A1WUL5|DER_HALHL RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|121588797|gb|ABM61377.1| small GTP-binding protein [Halorhodospira halophila SL1] Length = 472 Score = 249 bits (636), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 150/474 (31%), Positives = 237/474 (50%), Gaps = 36/474 (7%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M IA+VG PNVGKSTLFNRL + A+V +HPG+TRDR YG G +VDT G+ Sbjct: 1 MSAVIALVGRPNVGKSTLFNRLTGSRDALVADHPGLTRDRQYGIVRHQGGHAVVVDTGGM 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + + + M++Q AI A ++FL+D +AG T D I + LR+ +P+ + NK Sbjct: 61 GE-ELEGVGGCMHEQARAAIAGADAVVFLVDGQAGATVGDEEIAAELRRAQVPVFLAVNK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 D A + + L + + I+A G EL +F + P+ Sbjct: 120 TDGLDAGVAAADFHGLGLQPVHAIAATRGRGVGELLDAVFALLPPAEPD----------- 168 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 + S+G + +A++GRPNVGKSTL+NRLLG R++ + G TRD Sbjct: 169 -------AVGSDGPGGIP-------VAMIGRPNVGKSTLVNRLLGEERVVVYDEPGTTRD 214 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+++ + + DTAG+R+ +R+ E++E+ +V K+++++ +++ DA Sbjct: 215 SIAVPFERDGQHYTLIDTAGVRRRARVQETVEKFSVVKTLEAIERASVVMLVTDAQEGIT 274 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQ----IGDIYINTI 356 +QD + V G A+VL +NKWD L D R K ++L +G + + Sbjct: 275 EQDAHLAGHVLQAGRALVLVINKWD------GLDPDQRRKVRRDLDLRFAFLGFARHHFV 328 Query: 357 SGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQI 416 S G G+ L+ SV + + T LN LQ+ + PP R +L+Y Q Sbjct: 329 SALHGSGVGLLLESVERAHAAAHRDLATPELNDALQEALANHQPPLSRGRRIKLRYAHQG 388 Query: 417 QSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I ++P +Y RYL N R F L G P+R+ ++S NP+ K Sbjct: 389 GHNPPVIVIHGNQVQRLPRAYMRYLENFFRDTFDLYGTPVRIECRASDNPFADK 442 >gi|299771613|ref|YP_003733639.1| GTP-binding protein EngA [Acinetobacter sp. DR1] gi|298701701|gb|ADI92266.1| GTP-binding protein EngA [Acinetobacter sp. DR1] Length = 469 Score = 249 bits (636), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 148/467 (31%), Positives = 249/467 (53%), Gaps = 37/467 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA++G PNVGKSTLFN++ K + A+V + G+TRDR YG A F +VDT GI + Sbjct: 5 IALIGRPNVGKSTLFNQITKSRDALVADFAGLTRDRKYGDATYQNKSFIVVDTGGIGE-N 63 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I M +Q++ AINEA +I+F++D++AG+ D I LR I +V+NK+D Sbjct: 64 EGGIDNYMAEQSKTAINEADIIIFVVDARAGLLASDEQIARELRTLGKKIYLVANKVDGV 123 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 A+ E Y L E ++++A H G ++ LE + N +ES Sbjct: 124 HAEAALVEFYKLGMGEPLQVAASHGRGVQQM----------------LEDVLENVPEDES 167 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 +E+ + G LR+A++GRPNVGKSTL+NRLLG +R++ Q G TRDS+ I Sbjct: 168 EEEHDKATG----------LRLAIIGRPNVGKSTLVNRLLGEDRVVAFDQPGTTRDSIYI 217 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + DTAG+R+ ++ E +E+ ++ K++Q+++ +V+LDA +QDL Sbjct: 218 PFERDGRQYTLIDTAGVRRKGKVEEMIEKFSIVKTLQAIKDAHVVVVVLDAREGVVEQDL 277 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIY----INTISGRT 360 ++ G A+++A+NKWD N+ + R + ++ + D ++ IS Sbjct: 278 HLIGYALEAGRAMMIAINKWD------NMTEYDRKQCKLDVDRRFDFIPWAKVHLISALH 331 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G G+ D+ ++ +++ + L L + PP + + +++Y +P Sbjct: 332 GTGVGDMYPTIHRAYDSSHLKVSPAKLTQILNDATDAHQPPMVSGKRIKMRYAHMGGQNP 391 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 P+ +I +K P Y+RYL N R + L G P+R+ F++S+NP+ Sbjct: 392 PTIVIHGNKVDKTPADYRRYLENVFRKVYKLEGTPVRIDFKTSENPF 438 >gi|17545938|ref|NP_519340.1| GTP-binding protein EngA [Ralstonia solanacearum GMI1000] gi|26006721|sp|Q8Y026|DER_RALSO RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|17428233|emb|CAD14921.1| putative gtp-binding protein [Ralstonia solanacearum GMI1000] Length = 447 Score = 249 bits (636), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 153/468 (32%), Positives = 238/468 (50%), Gaps = 31/468 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+ + F +DT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRSRDALVADMPGLTRDRHYGEGRVGERPFIAIDTGGFEPVA 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I +M QT A+ EA +++F++D + G+ P D I +LRK I++ NK + Sbjct: 65 KEGIVAEMAKQTRQAVVEADVVIFIVDGRLGLAPQDRVIADYLRKTGRRILLAVNKAEGM 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + Y L + IS+ H G EL + + P E+ E Sbjct: 125 KYTAVATDFYELGLGDPRAISSAHGDGVRELVDEALDLAFAERP----ELAE-------- 172 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 +EG RIA+VGRPNVGKSTL+N L+G R++ G TRD++ + Sbjct: 173 -----AAEGH------DHGTRIAIVGRPNVGKSTLVNALIGEERVIAFDMPGTTRDAIYV 221 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + P + DTAG+RK ++ E++E+ +V K++QS+ ++LLDA QD Sbjct: 222 DFERNGKPYTLIDTAGLRKRGKVFEAIEKFSVVKTLQSIADANVVVLLLDAQQDISDQDA 281 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSD--KLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 I + +G A+V+ +NKWD + + + D+ K L + ++ IS + Sbjct: 282 HIAGFIVESGRALVIGVNKWDGLDGHARDRIKHDMERK----LQFLSFANVHYISAKQRT 337 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKT-QLQNPPPTIFNRYNRLKYITQIQSSPP 421 G+ LM SV + ++ T L LQ+ + Q P +R +L+Y Q S+PP Sbjct: 338 GIGALMKSVDDAYAAAMVKLPTPKLTRVLQEAVEFQQPRRAGVSR-PKLRYAHQGGSNPP 396 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIK 469 +I + IPE+Y+R+L R R F L G P+R+ F+++KNPY + Sbjct: 397 IVVIHGNALSNIPETYRRFLEGRFRDAFQLKGTPLRIEFRTNKNPYAQ 444 >gi|300176539|emb|CBK24204.2| GTP binding protein [Blastocystis hominis] Length = 607 Score = 249 bits (635), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 163/494 (32%), Positives = 259/494 (52%), Gaps = 34/494 (6%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAG-IA 61 +++A+VG NVGKSTLFNRLV ++ A+V G TRDR G+ I+G+ F ++DT G + Sbjct: 89 FSVALVGRTNVGKSTLFNRLVGRRDALVSKEAGTTRDRREGKGHISGLEFTLIDTGGYVP 148 Query: 62 DGKNCS-IAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPII---IV 117 + KN S I +Q+N QTE A+ +A ++ FL+D K G+T D AI S+ P+ I Sbjct: 149 ENKNISLIEQQINKQTEYAVEKADVLFFLLDGKVGVTNEDRAIASY----PFPLFTEGIF 204 Query: 118 SNKMDTRIA---QRNFYEIYSLDFKEIVEISAEHDLGTSELHSV------IFKIFKQKYP 168 S+ D + E+Y L E V +SAEH G +L V + + K Sbjct: 205 SHTDDNGNCPPWEELKSEVYQLGLGEPVGVSAEHGEGLLDLFEVLQPFGDLINLNKAAER 264 Query: 169 NHPLEMIENNKRNEESPKEN---------ITSEGKSSVKNI----SKPLRIAVVGRPNVG 215 +++E + ++ + S S+ KN + L++ ++G PN G Sbjct: 265 ERYAKILEAREAKASRSRQGYRVRTNVDMVESSEPSNEKNTRDLDDEILQLTILGIPNSG 324 Query: 216 KSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRIT-ESLEQK 274 KSTL+N LL +R +TGS G+TRD+VS + N I + DT G+ K + SL Sbjct: 325 KSTLLNTLLKTDRFITGSIPGLTRDTVSTEIEFHNRRIRVVDTPGIPKADGVLPPSLNSL 384 Query: 275 TVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLL 334 +V + + + ++LD + K DL + V + G + + LNK D++ Sbjct: 385 SVFHAHKQLDYSHVVALILDGSRLLTKHDLALAKEVLDKGRGLFVILNKSDVMQSPAAAK 444 Query: 335 QDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKT 394 + L + +PQ G + +S G G D + L++ W+TRI+T LN WL Sbjct: 445 KQLVQYMDRFVPQAGHVPSIVVSALYGRGTDAVFPLALDVFDRWRTRISTGILNRWLDAI 504 Query: 395 QLQNPPP-TIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSG 453 ++PPP T + +LKYITQ ++ PPSF++FC ++ +Y RYL + LR F+L+G Sbjct: 505 SFRHPPPRTKSGKEVKLKYITQTKARPPSFVLFCNV-KELDATYLRYLCSCLREEFNLNG 563 Query: 454 IPIRMCFQSSKNPY 467 +P+R+ ++S+NPY Sbjct: 564 VPVRIFVRASENPY 577 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/127 (29%), Positives = 63/127 (49%), Gaps = 9/127 (7%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI- 60 I + I+G PN GKSTL N L+K + G+ PG+TRD + + + +VDT GI Sbjct: 312 ILQLTILGIPNSGKSTLLNTLLKTDRFITGSIPGLTRDTVSTEIEFHNRRIRVVDTPGIP 371 Query: 61 -ADGKNCSIAKQMND----QTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPII 115 ADG + +N ++ +H++ ++D +T +D A+ + K + Sbjct: 372 KADG---VLPPSLNSLSVFHAHKQLDYSHVVALILDGSRLLTKHDLALAKEVLDKGRGLF 428 Query: 116 IVSNKMD 122 ++ NK D Sbjct: 429 VILNKSD 435 >gi|260588686|ref|ZP_05854599.1| ribosome-associated GTPase EngA [Blautia hansenii DSM 20583] gi|260541161|gb|EEX21730.1| ribosome-associated GTPase EngA [Blautia hansenii DSM 20583] Length = 441 Score = 249 bits (635), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 149/465 (32%), Positives = 242/465 (52%), Gaps = 35/465 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFN L +K+++V + PG+TRDR+Y + F ++DT GI Sbjct: 6 VAIVGRPNVGKSTLFNALAGEKISIVKDTPGVTRDRIYAEVTWLDKTFTMIDTGGIEPES 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 N I QM +Q ++AI+ A +I+F+ D + G+ D + LR+ P+++V NK+D+ Sbjct: 66 NDVILSQMREQAQIAIDTADVIIFMTDVRQGLVDADSKVADMLRRSKKPVVLVVNKVDSF 125 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + YE Y+L E V ISA LG ++ + + F N +E Sbjct: 126 QKFMMDTYEFYNLGIGEPVPISAASMLGLGDMLEKVVEHFDDD---------AQNDEEDE 176 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 PK IAVVG+PNVGKS+LIN++LG +R++ + +G TRD++ Sbjct: 177 IPK-------------------IAVVGKPNVGKSSLINKILGEDRVIVSNIAGTTRDAID 217 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 ++ DTAG+R+ ++I E LE+ ++ +++ +V + ++++DAT +QD Sbjct: 218 TKVTYQGKEYTFIDTAGLRRKNKIKEELERYSIIRTVTAVERADVVVMMIDATEGVTEQD 277 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 +I + G VV+A+NKWD + + K + L + I IS TG+ Sbjct: 278 AKIAGIAHDRGKGVVIAVNKWDAIEKNDKTIYKFTNKVRETLSYMPYAEIMFISAHTGQR 337 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWL-QKTQLQNPPPTIFNRYNRLK--YITQIQSSP 420 + +L ++ + + RI T LN + + T LQ PP ++ RLK Y TQ+ P Sbjct: 338 IPNLFETIDMVLENQTLRIQTGVLNEIITEATALQQPPS---DKGKRLKIFYTTQVSVKP 394 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 P+F+IF + SY RYL N++R F G ++ + K Sbjct: 395 PTFVIFVNDKELMHFSYVRYLENKIREAFGFKGTSLKFIIRERKE 439 >gi|218262398|ref|ZP_03476878.1| hypothetical protein PRABACTJOHN_02553 [Parabacteroides johnsonii DSM 18315] gi|218223401|gb|EEC96051.1| hypothetical protein PRABACTJOHN_02553 [Parabacteroides johnsonii DSM 18315] Length = 437 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 152/456 (33%), Positives = 241/456 (52%), Gaps = 30/456 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNRL + + A+V G TRDR YG+ F+++DT G Sbjct: 5 VAIVGRPNVGKSTLFNRLTQTRQAIVNEEAGTTRDRQYGKVEWTSKEFSLIDTGGWVINS 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +++N Q ++A+ EA +ILF++D G+T D+ + + LR+ P+I+V+NK D Sbjct: 65 DDVFEEEINKQVKIALEEADVILFVVDVLNGVTDLDNEVAAILRRAKKPVIVVANKADNF 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + E YS + +SA + T +L I P+ E++E EE Sbjct: 125 ELHPSSAEFYSFGLGDPFCVSAINGSCTGDLLDKIVATL----PDDKPEVLE-----EEL 175 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P RIA++GRPN GKS+LIN +G +R + +G TRDS+ Sbjct: 176 P-------------------RIAIIGRPNAGKSSLINAFIGEDRHIVTDIAGTTRDSIYT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 +N + DTAG+RK ++ E LE +V +S++++ + +++LDAT E QDL Sbjct: 217 KYNKFGLNFYLVDTAGIRKKGKVNEDLEYYSVIRSIRAIENSDVCVLMLDATRGIESQDL 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKN-LPQIGDIYINTISGRTGEG 363 I V +V+ +NKWD+V DK + D AI+ L D I IS T + Sbjct: 277 NIFSLVQKNKKGLVVCVNKWDLVEDKSQKVIDTFMNAIRERLAPFTDFPILFISALTKQR 336 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP-PS 422 + ++ + ++ + + R+ T+ LN + PPP +Y ++KYITQ+ + PS Sbjct: 337 ILKVLETAKDVYENRQRRVPTAKLNETMLPIIENYPPPAWKGKYIKIKYITQLPAGQVPS 396 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 F+ FC P I + YKR+L N++R N++ +G PI + Sbjct: 397 FVFFCNLPQWIKDPYKRFLENKIRENWNFTGTPINV 432 >gi|313904194|ref|ZP_07837573.1| ribosome-associated GTPase EngA [Eubacterium cellulosolvens 6] gi|313470996|gb|EFR66319.1| ribosome-associated GTPase EngA [Eubacterium cellulosolvens 6] Length = 443 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 154/468 (32%), Positives = 248/468 (52%), Gaps = 41/468 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFN L +++++V + PG+TRDR+Y F ++DT GI Sbjct: 6 VAIVGRPNVGKSTLFNALAGERISIVKDTPGVTRDRIYADVTWLNHEFTMIDTGGIEPDS 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + I KQM +Q +A+ A +I+F+ D + G+ D + + LRK P+++ NK+D Sbjct: 66 SDIILKQMREQAVIAMETADVIIFITDVRQGLVDADLQVATMLRKSKKPVVLAVNKVDDF 125 Query: 125 IAQR-NFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 Q YE Y+L E ISAE +G +L V+ F P EN + ++ Sbjct: 126 KTQEIGIYEFYNLGIGEPHAISAEGKMGLGDLLDVVISHF-------PEGAGENEE--DD 176 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 +PK IA+VG+PNVGKS++IN+LLG NR++ +G TRD++ Sbjct: 177 NPK-------------------IAIVGKPNVGKSSIINKLLGTNRVIVSDIAGTTRDAID 217 Query: 244 --ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 I N K++ DTAG+R+ S+I E LE+ ++ +++ +V C+ +V++DA + Sbjct: 218 TVIKRNGKDYT--FIDTAGLRRKSKIKEELERYSIVRTVAAVERCDIAVVVIDAVEGITE 275 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGD----IYINTIS 357 QD +I + G +++A+NKWD + +K + Q ++ +K D IYI+ + Sbjct: 276 QDAKIAGIAHDRGKGLIIAVNKWDAI-EKDDKTQKKFSEKVKATLSFADYAEIIYISAAT 334 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 G+ L D + VLE L R+ T LN L + PP+ R ++ Y+TQ+ Sbjct: 335 GQRLPKLFDTIEQVLESQNL---RVQTGVLNEILTEAVAMQQPPSDKGRRLKVFYMTQVA 391 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 PP+F+IF + SY+RY+ NR+R +F G I + ++ Sbjct: 392 VKPPTFVIFVNDKKLMHFSYQRYIENRIRDSFGFIGTAIHFIIREKQD 439 >gi|325855153|ref|ZP_08171776.1| ribosome biogenesis GTPase Der [Prevotella denticola CRIS 18C-A] gi|325483890|gb|EGC86834.1| ribosome biogenesis GTPase Der [Prevotella denticola CRIS 18C-A] Length = 437 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 148/458 (32%), Positives = 242/458 (52%), Gaps = 30/458 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +AIVG PNVGKSTLFNRL + + A+V + G TRDR YG+ NG F++VDT G Sbjct: 1 MANLVAIVGRPNVGKSTLFNRLTQTRHAIVSDTAGTTRDRQYGKCQWNGREFSVVDTGGW 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + + Q +A EA L+LFL+D++ G+T +D + LR+ +P+++V+NK Sbjct: 61 VVKSDDIFEDAIRKQVLVATEEADLVLFLVDTETGVTDWDEDVAMILRRTKLPVLLVANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D E Y L E + +SA GT +L ++ + K Sbjct: 121 VDNSGEYYQAAEFYKLGLGEPICVSAATGGGTGDLLDILLEKLK---------------- 164 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 ++P E++ + R AVVGRPN GKS++IN +G +R + +G TRD Sbjct: 165 --DAPDESVDQDIP----------RFAVVGRPNAGKSSIINAFIGEDRNIVTEIAGTTRD 212 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ + + DTAG+R+ +++TE LE +V +S++S+ + I++LDAT E Sbjct: 213 SIYTRYTKFGFDFYLVDTAGIRRKNKVTEDLEFYSVMRSIRSIENSDVCILMLDATRGIE 272 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAI-KNLPQIGDIYINTISGR 359 QD+ I + ++V+ +NKWD+V DK + D AI K + D I S Sbjct: 273 AQDMNIFQLIQRNNKSLVVVVNKWDLVEDKNQKVIDTFENAIRKRMAPFVDFPIIFASAL 332 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 T + + ++ + E+ + K I T+ LN + PP ++ +Y ++KY +Q+ ++ Sbjct: 333 TKQRIFKVLETAKEVYQNRKIHIGTTKLNEVMLPIIETTPPQSVKGKYIKIKYCSQLPNT 392 Query: 420 P-PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 PSF+ + P + E Y+R+L N++R N++L G PI Sbjct: 393 QIPSFVFYANLPQYVKEQYRRFLENKIRENWNLHGCPI 430 >gi|309809326|ref|ZP_07703195.1| ribosome biogenesis GTPase Der [Lactobacillus iners SPIN 2503V10-D] gi|308170439|gb|EFO72463.1| ribosome biogenesis GTPase Der [Lactobacillus iners SPIN 2503V10-D] Length = 435 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 150/461 (32%), Positives = 245/461 (53%), Gaps = 32/461 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKST+FNR++ ++A+V + PG+TRDR+Y A G F +VDT GI Sbjct: 6 VALVGRPNVGKSTIFNRIINSRVAIVEDQPGVTRDRIYANAQWMGKQFVLVDTGGITFED 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N I +Q+ Q E+AINEA +I+ L D +T D I L K PII+ NK D Sbjct: 66 NV-IEEQIKTQAEIAINEADVIVMLSDVTGHVTNLDETIAKILYKAKKPIILAINKADNP 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + Y+ YSL + + +S H G +L I F NN ++++ Sbjct: 125 EQRNDIYDFYSLGLGDPIPVSGSHGTGLGDLLDAIVSKFDG-----------NNTTDDDN 173 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 +R +++GRPNVGKS+++N +LG NR++ G TRD++ Sbjct: 174 ------------------NIRFSIIGRPNVGKSSIVNSILGENRVIVADMEGTTRDAIDT 215 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + I DTAG+R+ ++ E +E+ +V +S+ ++ + I+++DA++ +QD Sbjct: 216 IFEKDGQKYTIVDTAGIRRKGKVYEKVEKYSVMRSISAIEQSDVAIIVIDASVGIIEQDK 275 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIY-INTISGRTGEG 363 I + G V++A+NKWD+ +QD K I+ Q D I +S +TG+ Sbjct: 276 HIAGYAHDAGKGVIIAVNKWDVPYKTTTSMQDF-VKVIRQEFQYLDYAPIVFVSAKTGQR 334 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 ++D++ V + + + RI +S LN L P P + + R+ Y+TQ+ PP+F Sbjct: 335 IEDIVSLVKNVKENQQRRIQSSVLNDLLLDATRITPTPLVNGKRLRIYYMTQVAVVPPTF 394 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 ++F P + SYKR+LIN++R NF+ G PI++ + K Sbjct: 395 VVFVNDPELLHFSYKRFLINQMRQNFNFEGTPIKILARKRK 435 >gi|311113301|ref|YP_003984523.1| ribosome-associated GTPase EngA [Rothia dentocariosa ATCC 17931] gi|310944795|gb|ADP41089.1| ribosome-associated GTPase EngA [Rothia dentocariosa ATCC 17931] Length = 529 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 143/461 (31%), Positives = 244/461 (52%), Gaps = 38/461 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST+ NR++ ++ AVV + PG+TRDR+ +A G F +VDT G + Sbjct: 78 VAIVGRPNVGKSTIINRILGRREAVVEDKPGVTRDRVSYKAEWVGKRFTLVDTGGW-ESD 136 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I Q+ DQ E+A+ +A +++ ++D++ GIT D I LR+ PII+++NK+D Sbjct: 137 ARGIDAQVADQAEIAVEQADVVILVVDARVGITASDEQIVRMLRRVKKPIILMANKIDDS 196 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + Y ++SL + +S H G ++ + ++ P H + E+ Sbjct: 197 HLEPEIYSLWSLGMGQPFPVSGLHGRGLADALDELLEVM----PEH------SQYAQPEA 246 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P P R+A++GRPNVGKS+L+N+L G R + +G TRD + Sbjct: 247 P---------------GGPRRVALIGRPNVGKSSLLNKLAGSERAVVNDLAGTTRDPIDE 291 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + +P DTAG+R+ + + E + ++ ++ E +VLLD + P +QD+ Sbjct: 292 VIDLGGYPWRFIDTAGIRRRQHMAKGAEFYSSLRTQTALERSEVAVVLLDVSEPLSEQDV 351 Query: 305 RIVDSVFNTGHAVVLALNKWDMV-SDKLNLLQ---DLRTKAIKNLPQIGDIYINTISGRT 360 RI+ + ++G A+VLA NKWD + ++ ++L+ D +K P++ IS +T Sbjct: 352 RIIQTTIDSGRAMVLAFNKWDTLDEERRDMLEREIDRDLAHVKWAPRV------NISAKT 405 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G D L+ ++ + W +RI T LN++L + +P P + R+ + TQ+ S P Sbjct: 406 GWHKDKLVPALERSLESWDSRIPTGRLNAFLGELAAAHPHPLRGGKQPRILFGTQVSSRP 465 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 P F++F T + Y+R++ RLR F +G PI + + Sbjct: 466 PKFVLFTT--GFLDPGYRRFITRRLRETFEFTGTPIEISMR 504 >gi|326692494|ref|ZP_08229499.1| GTP-binding protein Der [Leuconostoc argentinum KCTC 3773] Length = 437 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 139/461 (30%), Positives = 239/461 (51%), Gaps = 30/461 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST+FNR+ +++A+V + PG+TRDRLY A F ++DT GI G Sbjct: 6 VAIVGRPNVGKSTIFNRMAGERIAIVEDQPGVTRDRLYAPAEWLNYEFRMIDTGGIELGD 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +A ++ Q ELA++EA +I+ + + G+T D + L K + P+++ NK+D Sbjct: 66 EPFLA-EIRAQVELALDEADVIVMVTSGREGVTSADEVVAKMLYKTDKPVVLAVNKVDNP 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 +++ Y+ YSL E +S H LG +L + K F Sbjct: 125 EMRQDIYDFYSLGLGEPYPVSGSHGLGLGDLLDEVVKNF--------------------- 163 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P E E ++ R +++GRPNVGKS+++N +LG R++ G TRD++ Sbjct: 164 PDEAAEQEDDGAI-------RFSIIGRPNVGKSSIVNAILGEERVIVSDIEGTTRDAIDT 216 Query: 245 SW-NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + + + DTAGMRK ++ E+ E+ +V ++++++ +++LDA +QD Sbjct: 217 RFVTPEGDEFIMVDTAGMRKRGKVYENTEKYSVMRALKAIDDSNVVLMVLDAEAGIREQD 276 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 + G A+++ +NKWD + + ++D + I +S +TG+ Sbjct: 277 KHVAGFAHEAGRAMIIVVNKWDAIEKDDHTMKDFENLIRAEFKFLDYAPIVFVSAKTGQR 336 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 LD L + +++ + RI++S LN + NP PT R R+ Y TQ+ PP+F Sbjct: 337 LDRLPQMIKDVDANHRKRISSSTLNDVIMDAIAVNPTPTDNGRRLRVYYATQVAVQPPTF 396 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 +IF + SY+R+L N++R F +G PI++ ++ K Sbjct: 397 VIFVNDVELMHFSYERFLENKIREAFDFTGTPIKLIVRARK 437 >gi|295106000|emb|CBL03543.1| ribosome-associated GTPase EngA [Gordonibacter pamelaeae 7-10-1-b] Length = 438 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 142/458 (31%), Positives = 235/458 (51%), Gaps = 29/458 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKST NR+ + A+V G+TRDR Y +A NGV F +VDT GI G Sbjct: 6 VAVVGRPNVGKSTFVNRIAQADEAIVHEMRGVTRDRSYHEADWNGVEFKLVDTGGIEMGD 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + + Q NEA +++F++D K GI D A+ LRK P+ +V NKMDT Sbjct: 66 DDAFQGSIRAQAIAGANEADVVIFIVDGKTGINADDEAVARILRKAGKPVFLVVNKMDTP 125 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSE-LHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 +E Y L + +S+ H GT + L +V+ ++ + + P EE Sbjct: 126 NRTDELWEFYQLGVGDPWPVSSTHGHGTGDLLDAVVEELRRAEVPAD----------EEE 175 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 P N +A++GRPN GKS+L N++ +R + +G TRD++ Sbjct: 176 EPSIN-----------------VAIIGRPNAGKSSLTNKMTKGDRSIVSDVAGTTRDAID 218 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + I DTAG+R+ S+I + +E ++M+++ + ++++D+T+ QD Sbjct: 219 TAVEHDGTLYTIVDTAGLRRKSQIDQDVEYYGFVRAMRAIDRADVALLVIDSTLGLTDQD 278 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 R+ G A+V+ LNKWD+V + D+R + + +G + IS TG+ Sbjct: 279 QRVAGYAAERGCAMVIVLNKWDLV-EGPEAKADIRERIADRMTFVGYAPVVAISALTGKK 337 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 +D + ++ E + + I T+ LN+WL + + R+KY+TQ + PP F Sbjct: 338 VDRIWEAIDEAYENFSQTIPTNKLNTWLSGIREGGHTVSNGKAVLRMKYVTQTGTCPPYF 397 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 F P+ + ++Y+R+L NRLR F L G P+++ F+ Sbjct: 398 TFFVNRPDLVTDNYERFLENRLREGFDLVGTPVKLKFK 435 >gi|126668584|ref|ZP_01739538.1| GTP-binding protein EngA [Marinobacter sp. ELB17] gi|126626989|gb|EAZ97632.1| GTP-binding protein EngA [Marinobacter sp. ELB17] Length = 474 Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 146/475 (30%), Positives = 250/475 (52%), Gaps = 39/475 (8%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M IA+VG PNVGKSTLFN++ + + A+V + PG+TRDR YG+ F ++DT G+ Sbjct: 1 MNLVIALVGRPNVGKSTLFNQMTRSRDALVADFPGLTRDRKYGEGNYENQRFIVIDTGGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 G + M Q+ A+ EA ++LF++D +AG+ P D + LR+ +V NK Sbjct: 61 M-GDELGLDAAMAKQSLQAVEEADIVLFIVDGRAGVMPGDQVLADQLRRSGTQAHLVINK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 D + + Y+L F+ I+A H+ G + ++ Sbjct: 120 TDGQDPNLVASDFYALGFQSQFRIAASHNRGVRSMLEILLP------------------- 160 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 +P+E+ +G + I RI +VGRPNVGKSTL+NR+LG R++ G TRD Sbjct: 161 ---TPEEDADIDGAHNHPGI----RIGIVGRPNVGKSTLVNRMLGEERVVVYDLPGTTRD 213 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ I + + DTAG+R+ + E +E+ ++ K++Q++ I+++DA Sbjct: 214 SIYIPYERLGQEYTLIDTAGVRRRKNVREVVEKFSIIKTLQAIDDAHVVILVIDAREGLV 273 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVS--DKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 QD+ ++ V + G ++V+A+NKWD ++ D+ + + +R + + L YI+ + G Sbjct: 274 DQDMHLMGFVLSAGRSLVIAINKWDGMNGEDRDKVKEQIRRR-LDFLDYADKHYISALHG 332 Query: 359 RTGEGLDDLMVSVLEINKLWKTRIT---TSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQ 415 +G G V +N +++ + T+ L + L+ Q+ PP + R +L+Y Q Sbjct: 333 -SGVG-----VMYQSVNACYESAMAKWPTNRLTTILEDAIAQHQPPMVHGRRIKLRYAHQ 386 Query: 416 IQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 S+PP+ ++ + +P +YKRYL N R +++G PIR F+SS+NP+ K Sbjct: 387 GGSNPPTIVVHGNQTDSLPGAYKRYLENSFRKVLAVTGTPIRFEFRSSENPFAHK 441 >gi|293610300|ref|ZP_06692601.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292827532|gb|EFF85896.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 469 Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 153/465 (32%), Positives = 249/465 (53%), Gaps = 33/465 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA++G PNVGKSTLFN++ K + A+V + G+TRDR YG A F +VDT GI + Sbjct: 5 IALIGRPNVGKSTLFNQITKSRDALVADFAGLTRDRKYGDATYQNKSFIVVDTGGIGE-S 63 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I M +Q++ AINEA +I+F++D++AG+ D I LR I +V+NK+D Sbjct: 64 EGGIDNYMAEQSKTAINEADIIIFVVDARAGLLASDEQIARELRTLGKKIYLVANKVDGV 123 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 A+ E Y L E ++++A H G ++ LE + +E+ Sbjct: 124 HAEAALVEFYKLGMGEPLQVAATHGRGVQQM----------------LEDVLAEVPEDEN 167 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P+E+ G LR+A++GRPNVGKSTL+NRLLG +R++ Q G TRDS+ I Sbjct: 168 PEEHDKDTG----------LRLAIIGRPNVGKSTLVNRLLGEDRVVAFDQPGTTRDSIYI 217 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + + DTAG+R+ ++ E +E+ ++ K++Q+++ +V++DA +QDL Sbjct: 218 PFEREGRKYTLIDTAGVRRKGKVDEMIEKFSIVKTLQAMKDAHVVVVVVDAREGIVEQDL 277 Query: 305 RIVDSVFNTGHAVVLALNKWDMVS--DKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 ++ G A+V+A+NKWD +S D+ D+ + I I+ IS G Sbjct: 278 HLIGYALEAGRAMVIAINKWDNMSEYDRKQCKLDVE----RRFDFIPWAKIHLISALHGT 333 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 G+ DL S+ + +++ + L L + PP I R +++Y +PP+ Sbjct: 334 GVGDLYPSIHRAYESANLKVSPAKLTQILSDATEAHQPPMISGRRIKMRYAHMGGQNPPT 393 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 +I +K P Y+RYL N R + L G P+R+ F++S+NP+ Sbjct: 394 IVIHGNKVDKTPADYRRYLENVFRKVYKLEGTPVRIDFKTSENPF 438 >gi|292670962|ref|ZP_06604388.1| GTP-binding protein EngA [Selenomonas noxia ATCC 43541] gi|292647583|gb|EFF65555.1| GTP-binding protein EngA [Selenomonas noxia ATCC 43541] Length = 428 Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 149/458 (32%), Positives = 245/458 (53%), Gaps = 37/458 (8%) Query: 13 VGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNCSIAKQM 72 +GKSTLFN++ KK++++V + PG+TRDR+Y A F ++DT GI ++ I + M Sbjct: 1 MGKSTLFNQIGKKRISIVDDMPGVTRDRIYMDAEWLNHEFIMIDTGGIEFDESDHILRSM 60 Query: 73 NDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQRNFYE 132 Q ELAI EA +ILFL+D +AG+T D + LR+ P+I+ NK+D+ + Y+ Sbjct: 61 RSQAELAIEEADVILFLVDGRAGLTSSDEEVARILRRTQKPVILAVNKIDSFDREALIYD 120 Query: 133 IYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEESPKENITSE 192 Y+L + + ISA + + +L ++ F R ++ E Sbjct: 121 FYALGLGDPIPISASNAMNLGDLLDMVAAAF---------------PRATDADAE----- 160 Query: 193 GKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHP 252 S + IAVVGRPNVGKS+L+NRLLG +R++ G TRD++ + Sbjct: 161 --------SDEIAIAVVGRPNVGKSSLVNRLLGEDRVIVSDVPGTTRDAIDTHFTRDGVK 212 Query: 253 IEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFN 312 + DTAGMR+ +IT +E+ +V +S++++ +++++A +QD +I V Sbjct: 213 YLLIDTAGMRRKGKITLPVERYSVMRSLRAIDRAGVVLMVINAAEGILEQDTKIAGYVHE 272 Query: 313 TGHAVVLALNKWDMVSDK-----LNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDL 367 +G V++ +NKWD+ DK L +LR K L +Y + ++G+ E + +L Sbjct: 273 SGKGVIIVVNKWDIFPDKNDKSTLRFTDELRDK-FGFLQYAPILYTSALTGQRIERVTEL 331 Query: 368 MVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFLIFC 427 + V E + RI TS LN ++ NPPPT + ++ ++TQ+ PP+F+IF Sbjct: 332 VKYVAEQQSM---RIKTSVLNELIRDAVSVNPPPTKKGKQLKILFVTQVSIIPPTFVIFV 388 Query: 428 TFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 P + SY R+L NRLR +F G P+R+ ++ K Sbjct: 389 NDPELMHFSYLRFLENRLRESFGFEGTPLRLIVRARKE 426 Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 44/121 (36%), Positives = 69/121 (57%), Gaps = 2/121 (1%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI-AD 62 IA+VG PNVGKS+L NRL+ + +V + PG TRD + +GV + ++DTAG+ Sbjct: 165 AIAVVGRPNVGKSSLVNRLLGEDRVIVSDVPGTTRDAIDTHFTRDGVKYLLIDTAGMRRK 224 Query: 63 GKNCSIAKQMNDQTEL-AINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 GK ++ + L AI+ A ++L +I++ GI D I ++ + +IIV NK Sbjct: 225 GKITLPVERYSVMRSLRAIDRAGVVLMVINAAEGILEQDTKIAGYVHESGKGVIIVVNKW 284 Query: 122 D 122 D Sbjct: 285 D 285 >gi|258545523|ref|ZP_05705757.1| GTP-binding protein EngA [Cardiobacterium hominis ATCC 15826] gi|258519223|gb|EEV88082.1| GTP-binding protein EngA [Cardiobacterium hominis ATCC 15826] Length = 463 Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 141/467 (30%), Positives = 249/467 (53%), Gaps = 22/467 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTL+N L + + ++V + PG+TRDR YG A + G+ IVDT G+ + Sbjct: 18 VALVGRPNVGKSTLYNALTRSRDSLVSDTPGLTRDRNYGDATLAGMPCRIVDTGGLLREE 77 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I ++++ Q A+ EA +++F++D + G+T D I + LR+ P+I+ NK D Sbjct: 78 EDQIDRRVDKQARAAVEEADIVVFVVDGRDGLTAVDETIAAELRRSQKPVILAVNKTDFA 137 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + Y+L + + I+AEH G +L I R E+ Sbjct: 138 DPDLILADFYTLGIADTLAIAAEHRRGLQQLTQRIV------------------TRLLET 179 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P + E + +N + + +AV+GRPN GKSTL+NRL+G RL+ +G TRD+++I Sbjct: 180 PDAALFGE-EDEAENQEEGIALAVIGRPNAGKSTLLNRLIGEERLVASPVAGTTRDAIAI 238 Query: 245 SW-NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + + + + DTAG+R+ +R+ + +E+ ++ K++ ++ I++LDA +QD Sbjct: 239 PYEDAQGDRFTLIDTAGIRRKARVNDKIEKFSIVKTLDAIERANVVILMLDAHEGVSEQD 298 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 ++ + G A+++A+NKWD ++D+ Q +R++ + L + + IS G Sbjct: 299 AHLLGEITRRGRALIIAINKWDHLNDEQR--QAIRSQFERKLHFVDYAEVFYISALHGSN 356 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 + L+ +V ++ + ++T+ L LQ ++ PP + +L+Y Q +PP Sbjct: 357 IRQLLPAVKKVYRAAMAELSTNKLTEALQAAYRRHQPPLVQGYSIKLQYAHQGGRNPPHI 416 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +I T +P SY YL R +F L G P+R+ ++ NPY K Sbjct: 417 IIHGTRTTNVPASYTTYLSKFFREHFKLHGTPVRISYRDKTNPYADK 463 >gi|331081965|ref|ZP_08331093.1| GTP-binding protein engA [Lachnospiraceae bacterium 6_1_63FAA] gi|330405560|gb|EGG85090.1| GTP-binding protein engA [Lachnospiraceae bacterium 6_1_63FAA] Length = 441 Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 149/465 (32%), Positives = 241/465 (51%), Gaps = 35/465 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFN L +K+++V + PG+TRDR+Y + F ++DT GI Sbjct: 6 VAIVGRPNVGKSTLFNALAGEKISIVKDTPGVTRDRIYAEVTWLDKTFTMIDTGGIEPES 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 N I QM +Q ++AI+ A +I+F+ D + G+ D + LR+ P+++V NK+D+ Sbjct: 66 NDVILSQMREQAQIAIDTADVIIFMTDVRQGLVDADSKVADMLRRSKKPVVLVVNKVDSF 125 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + YE Y+L E V ISA LG ++ + + F N +E Sbjct: 126 QKFMMDTYEFYNLGIGEPVPISAASMLGLGDMLEKVVEHFDDD---------AQNDEEDE 176 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 PK IAVVG+PNVGKS+LIN++LG +R++ + +G TRD++ Sbjct: 177 IPK-------------------IAVVGKPNVGKSSLINKILGEDRVIVSNIAGTTRDAID 217 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 ++ DTAG+R+ ++I E LE+ ++ +++ +V + ++++DAT +QD Sbjct: 218 TKVTYQGKEYTFIDTAGLRRKNKIKEELERYSIIRTVTAVERADVVVMMIDATEGVTEQD 277 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 +I + G VV+A+NKWD + + K + L + I IS TG+ Sbjct: 278 AKIAGIAHDRGKGVVIAVNKWDAIEKNDKTIYKFTNKVRETLSYMPYAEIMFISAHTGQR 337 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWL-QKTQLQNPPPTIFNRYNRLK--YITQIQSSP 420 + L ++ + + RI T LN + + T LQ PP ++ RLK Y TQ+ P Sbjct: 338 IPKLFETIDMVLENQTLRIQTGVLNEIITEATALQQPPS---DKGKRLKIFYTTQVSVKP 394 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 P+F+IF + SY RYL N++R F G ++ + K Sbjct: 395 PTFVIFVNDKELMHFSYVRYLENKIREAFGFKGTSLKFIIRERKE 439 >gi|269215396|ref|ZP_06159250.1| ribosome-associated GTPase EngA [Slackia exigua ATCC 700122] gi|269130883|gb|EEZ61958.1| ribosome-associated GTPase EngA [Slackia exigua ATCC 700122] Length = 440 Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 146/462 (31%), Positives = 234/462 (50%), Gaps = 37/462 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKST NR+ A+V G+TRDR Y +A +GV F +VDT GI G Sbjct: 8 VAVVGRPNVGKSTFVNRITHGNDAIVHEMRGVTRDRSYHEAEWSGVHFTLVDTGGIEMGD 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + +Q + EA I+F++D K GI D A+ LRK + P+ + NKMD Sbjct: 68 DDVFQGSIREQAFVGAEEADAIVFIVDGKTGIAADDDAVARILRKTSKPVFLTVNKMDNP 127 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + +E Y L + IS+EH GT +L + + + Sbjct: 128 ADESAMWEFYQLGLGDPWPISSEHGHGTGDLLDAVIDVIR-------------------- 167 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 +I +NI + +A++GRPN GKS+L NRL+G R + +G TRD++ Sbjct: 168 ---DIPEREPEERENI---VNVAIIGRPNAGKSSLTNRLIGKERSIVSDVAGTTRDAIDT 221 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + I DTAG+R+ ++I + +E ++M+++ + ++++DAT+ QD Sbjct: 222 TIEHEGTFYTIVDTAGLRRKAQIDQDVEYYGFVRAMRAIDRADVALLVVDATLGLTDQDQ 281 Query: 305 RIVDSVFNTGHAVVLALNKWDMV--SDKLNLLQ---DLRTKAIKNLPQIGDIYINTISGR 359 R+ G A+ + LNK D V D LN L+ + R +K P + +IS Sbjct: 282 RVAGYAHERGCALAILLNKRDAVESGDTLNALREDIEERMNFVKYAPVL------SISAL 335 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 TG+ +D + + ++ + ITT LN+WLQ + + R +LKY+TQ ++ Sbjct: 336 TGKSVDRIWNMIDDVFASYSAHITTGKLNAWLQTIREFGFTVSKGKRRLKLKYVTQTRTC 395 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 PP F +FC P+ + ++++RYL NR R F L G PI F+ Sbjct: 396 PPQFTVFCNMPDLVNDNFERYLENRFRQTFELPGTPIVFKFK 437 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 40/129 (31%), Positives = 65/129 (50%), Gaps = 12/129 (9%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI- 60 I +AI+G PN GKS+L NRL+ K+ ++V + G TRD + G + IVDTAG+ Sbjct: 180 IVNVAIIGRPNAGKSSLTNRLIGKERSIVSDVAGTTRDAIDTTIEHEGTFYTIVDTAGLR 239 Query: 61 ------ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPI 114 D + + M AI+ A + L ++D+ G+T D + + ++ + Sbjct: 240 RKAQIDQDVEYYGFVRAMR-----AIDRADVALLVVDATLGLTDQDQRVAGYAHERGCAL 294 Query: 115 IIVSNKMDT 123 I+ NK D Sbjct: 295 AILLNKRDA 303 >gi|50365015|ref|YP_053440.1| GTP-binding protein EngA [Mesoplasma florum L1] gi|81695689|sp|Q6F1R7|DER_MESFL RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|50363571|gb|AAT75556.1| GTP-binding protein, cell cycle control [Mesoplasma florum L1] Length = 435 Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 146/460 (31%), Positives = 243/460 (52%), Gaps = 30/460 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKS+LFNR++++K ++V + PG+TRDR+YG A F ++DT GI + Sbjct: 6 VAIVGRPNVGKSSLFNRIIREKKSIVEDTPGVTRDRIYGTAEWLTREFIVIDTGGIT-LE 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + AK++ Q E+A+ EA +I+FL++ + G++ D I L K PI++ NK D + Sbjct: 65 DQPFAKEIKVQAEIAMEEADVIVFLLNHQEGLSDEDKMIAKILYKTKKPIVLAVNKYDKK 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + YE SL F E + ISA H +GT +L I + P+H EE Sbjct: 125 TSDFDQYEYMSLGFGEPILISATHGIGTGDLLDDII----HQMPSH-----------EEI 169 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 K+N T R++++GRPNVGKS+L+N L+G R++ G T D+V Sbjct: 170 NKDNRT--------------RVSIIGRPNVGKSSLVNSLIGEERMIVSDIPGTTLDAVDS 215 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 N + DTAG+RK S+I +++E+ + +S+ ++ + +++LDA++P D Sbjct: 216 VVKVNNIEYTLIDTAGIRKKSKIFQNVEKYSYLRSLTTINGSDVVLLMLDASVPISDLDT 275 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 I F +++ NKWD+V +K + + + I +S + Sbjct: 276 NIGGLAFEEKKPIIIIANKWDLVENKEKEILKKEDEIRAYFKYLAYAKILFVSAHDKTRI 335 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 + +V +I +I TS N L K QL NP P ++ Y Q+++ P+F+ Sbjct: 336 TKIFTAVEDIRTALDKKIKTSVFNEVLNKAQLINPAPNFNGGRLKIYYGAQVEAYLPTFV 395 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 +F P+ + SYKR+L N++R+ F G+P+ + F+ K Sbjct: 396 LFVNNPDYVHFSYKRFLENQIRLQFGFEGVPMSIIFRERK 435 >gi|294788428|ref|ZP_06753671.1| ribosome-associated GTPase EngA [Simonsiella muelleri ATCC 29453] gi|294483859|gb|EFG31543.1| ribosome-associated GTPase EngA [Simonsiella muelleri ATCC 29453] Length = 489 Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 154/467 (32%), Positives = 233/467 (49%), Gaps = 30/467 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M TIA+VG PNVGKSTLFNRL K K A+V + PG+TRDR YG + + +VDT G Sbjct: 1 MKPTIALVGRPNVGKSTLFNRLTKTKDALVHDLPGLTRDRHYGHGRVGSKPYLVVDTGGF 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + I +M QT A++EA ++FL+D++ G+TP D I LR+ + P+ + NK Sbjct: 61 EPVVDSGILHEMAKQTLQAVDEADAVIFLVDARTGLTPQDKIIADRLRQSSRPVFLAVNK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + E Y L E IS H G L + +K+P+ E EN Sbjct: 121 GEGGNRPILAAEFYELALGEPYVISGAHGDGVYYLIEDVL----EKFPDTSDEQPENKH- 175 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 P+ AV+GRPNVGKSTL+N +LG R++ +G TRD Sbjct: 176 ----------------------PV-FAVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRD 212 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ I + + P I DTAG+RK ++ E++E+ +V K+MQ++ +++LDA Sbjct: 213 SIHIDFEREGKPFTIIDTAGVRKRGKVDEAVEKFSVIKAMQAIEAANVAVLVLDAQQDIA 272 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 QD I G A+V+A+NKWD +S++ D++ + L + + IS Sbjct: 273 DQDATIAGFALEAGRALVIAVNKWDGISEERR--NDIKRDIARKLYFLDFAKFHYISALK 330 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 +G+D L S+ ++ T + LQ + PP +++Y Q +P Sbjct: 331 EKGIDGLFDSIQAAYDAAFIKMPTPKITRVLQSAIERQQPPRAGLMRPKMRYAHQGGMNP 390 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 P +I + I +SY RYL R F+L G P+R+ + S+NPY Sbjct: 391 PVIVIHGNSLHAIGDSYTRYLTQTFRKAFNLQGTPLRIQYNVSENPY 437 >gi|281421766|ref|ZP_06252765.1| ribosome-associated GTPase EngA [Prevotella copri DSM 18205] gi|281404261|gb|EFB34941.1| ribosome-associated GTPase EngA [Prevotella copri DSM 18205] Length = 437 Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 153/458 (33%), Positives = 242/458 (52%), Gaps = 30/458 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +AIVG PNVGKSTLFNRL + + A+V + G TRDR YG+ NG F++VDT G Sbjct: 1 MANLVAIVGRPNVGKSTLFNRLTQSRRAIVSDTAGTTRDRQYGKCSWNGREFSVVDTGGW 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + + Q +A EA L+LFL+D G+T +D + LR+ +P+I+V+NK Sbjct: 61 VVKSDDIFEDAIRKQVLVATEEADLVLFLVDVNTGLTDWDEDVALILRRAKLPVILVANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D E Y L + ISA GT +L +I K ++P E IE Sbjct: 121 VDNSAEYYQAAEFYKLGLGDPQCISAATGGGTGDLLDMIL----DKLQDNPEEAIE---- 172 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 E+ P R AVVGRPN GKS++IN +G +R + +G TRD Sbjct: 173 -EDIP-------------------RFAVVGRPNAGKSSIINAFIGEDRNIVTEIAGTTRD 212 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ ++ + DTAG+R+ ++++E LE +V +S++++ + I++LDAT E Sbjct: 213 SIYTRYDKFGFDFYLVDTAGIRRKNKVSEDLEFYSVMRSIRAIENSDVCILMLDATRGIE 272 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAI-KNLPQIGDIYINTISGR 359 QD+ I + ++V+ +NKWD+V +K + D AI K + D I S Sbjct: 273 TQDMNIFQLIQKNNKSLVVVVNKWDLVEEKNQKVIDTFENAIRKRMAPFVDFPIIFASAL 332 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQI-QS 418 T + + ++ + ++ + K I TS LN + PP ++ +Y ++KY TQ+ + Sbjct: 333 TKQRIFRVLETAKDVYQNRKAHIGTSKLNEVMLPIIEAYPPQSVKGKYIKIKYCTQLPNT 392 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 + PSF+ + P + E+Y+R+L N++R N+SL G PI Sbjct: 393 TIPSFVFYANLPQYVKENYRRFLENKIRENWSLHGCPI 430 >gi|194334612|ref|YP_002016472.1| GTP-binding protein EngA [Prosthecochloris aestuarii DSM 271] gi|238693304|sp|B4S433|DER_PROA2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|194312430|gb|ACF46825.1| small GTP-binding protein [Prosthecochloris aestuarii DSM 271] Length = 436 Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 150/458 (32%), Positives = 240/458 (52%), Gaps = 31/458 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTLFNR+ +K A+V + PG+TRDR A G F ++DT G Sbjct: 5 VALVGRPNVGKSTLFNRITHQKSAIVDSTPGVTRDRHIMPAEWIGKEFLVMDTGGYCHDS 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKK--NIPIIIVSNKMD 122 + I+K M +QT AI EA +I+FL+D ++G+T D + L++ + P+ NK++ Sbjct: 65 D-GISKAMLEQTLTAIGEADVIIFLVDVRSGLTYLDLDMAKLLKRDFNDKPVYFAVNKVE 123 Query: 123 TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 + F E ISA G ++L + F Sbjct: 124 SPQLAYEGESFRKTGFTEPWFISARDGSGVADLLDAVVDSF------------------- 164 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 E KS + +R+A++GRPNVGKS+ +N LLG NR + ++ G TRD++ Sbjct: 165 ---------EEKSGQEEEDDSIRLAIIGRPNVGKSSFVNALLGTNRNIVSNKPGTTRDAI 215 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + I + DTAG+RK +RI +E + ++ +++ C+ +VL+DA EKQ Sbjct: 216 DTRFKRNGREIVLIDTAGLRKRARIDAGIEFYSSLRTERAIERCDVALVLIDAEQGLEKQ 275 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D++I++ V+L +NKWD++ + + ++ +G I I IS T + Sbjct: 276 DMKIIEMAAERKKGVLLLVNKWDLIEKDSKTSKLYSDRMYDDMGNLGWIPIQFISAMTKK 335 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 L + + L+I + +ITTS LN +LQ T LQ PP + + ++KY+TQI++ P Sbjct: 336 NLYRAIDAALDIQEQRSQQITTSDLNRFLQDTLLQAPPSSKSGKELKIKYMTQIRAPWPV 395 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCF 460 F FC P + +YKR+L R+R N++LSG+P + F Sbjct: 396 FAFFCNDPKLLQNNYKRFLEKRIRQNYNLSGVPFSLRF 433 >gi|282880854|ref|ZP_06289547.1| ribosome-associated GTPase EngA [Prevotella timonensis CRIS 5C-B1] gi|281305236|gb|EFA97303.1| ribosome-associated GTPase EngA [Prevotella timonensis CRIS 5C-B1] Length = 437 Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 156/458 (34%), Positives = 242/458 (52%), Gaps = 30/458 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +AIVG PNVGKSTLFNRL + + A+V + G TRDR YG+ NG F++VDT G Sbjct: 1 MANLVAIVGRPNVGKSTLFNRLTQSRKAIVSDTAGTTRDRQYGKCSWNGREFSVVDTGGW 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + + Q +A EA L+LF++D K G+T +D + LR+ +P+I+V+NK Sbjct: 61 VVNSDDIFEDAIRKQVVVATEEADLVLFVVDVKNGLTDWDADVAQILRQTKLPVILVANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D E Y L E ISA T + + +K P+ E +E Sbjct: 121 VDNSAEYYTAAEFYRLGLGEPQCISA----ATGGGTGDLLDLLLEKLPSDKREELE---- 172 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 E+ P R AVVGRPNVGKS++IN +G +R + +G TRD Sbjct: 173 -EDIP-------------------RFAVVGRPNVGKSSIINAFIGEDRNIVTEIAGTTRD 212 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ ++ + DTAG+R+ +++TE LE +V +S+ S+ + I++LDAT E Sbjct: 213 SIYTRYDKFGFDFYLVDTAGIRRKNKVTEDLEFYSVMRSIHSIENSDVCILMLDATRGIE 272 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKN-LPQIGDIYINTISGR 359 QD+ I + ++V+ +NKWD+V DK + + AI+ + D I S Sbjct: 273 SQDMNIFQLIQRNNKSLVVVVNKWDLVEDKDHKVIKTFENAIRERMAPFVDFPIIFASAL 332 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 T + + ++ + + K K RI TS LN + PPP+I +Y ++KY TQ+ ++ Sbjct: 333 TKQRIFKVLETAKNVYKSRKLRIGTSKLNEVMLPIIEATPPPSIKGKYIKIKYCTQLPNT 392 Query: 420 P-PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 PSF+ + P I E+Y+R+L N++R N++L+G PI Sbjct: 393 QIPSFVFYANLPQYIKENYRRFLENKIRENWTLTGSPI 430 >gi|325124482|gb|ADY84005.1| GTP-binding protein [Acinetobacter calcoaceticus PHEA-2] Length = 469 Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 153/465 (32%), Positives = 249/465 (53%), Gaps = 33/465 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA++G PNVGKSTLFN++ K + A+V + G+TRDR YG A F +VDT GI + Sbjct: 5 IALIGRPNVGKSTLFNQITKSRDALVADFAGLTRDRKYGDATYQNKSFIVVDTGGIGE-S 63 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I M +Q++ AINEA +I+F++D++AG+ D I LR I +V+NK+D Sbjct: 64 EGGIDNYMAEQSKTAINEADIIIFVVDARAGLLASDEQIARELRTLGKKIYLVANKVDGV 123 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 A+ E Y L E ++++A H G ++ LE + +E+ Sbjct: 124 HAEAALVEFYKLGMGEPLQVAASHGRGIQQM----------------LEDVLAEVPEDEN 167 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P+E+ G LR+A++GRPNVGKSTL+NRLLG +R++ Q G TRDS+ I Sbjct: 168 PEEHDKDTG----------LRLAIIGRPNVGKSTLVNRLLGEDRVVAFDQPGTTRDSIYI 217 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + + DTAG+R+ ++ E +E+ ++ K++Q+++ +V++DA +QDL Sbjct: 218 PFEREGRKYTLIDTAGVRRKGKVDEMIEKFSIVKTLQAMKDAHVVVVVVDAREGIVEQDL 277 Query: 305 RIVDSVFNTGHAVVLALNKWDMVS--DKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 ++ G A+V+A+NKWD +S D+ D+ + I I+ IS G Sbjct: 278 HLIGYALEAGRAMVIAINKWDNMSEYDRKQCKLDVE----RRFDFIPWAKIHLISALHGT 333 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 G+ DL S+ + +++ + L L + PP I R +++Y +PP+ Sbjct: 334 GVGDLYPSIHRAYESANLKVSPAKLTQILSDATEAHQPPMISGRRIKMRYAHMGGQNPPT 393 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 +I +K P Y+RYL N R + L G P+R+ F++S+NP+ Sbjct: 394 IVIHGNKVDKTPADYRRYLENVFRKVYKLEGTPVRIDFKTSENPF 438 >gi|299067270|emb|CBJ38467.1| GTPase involved in ribosome synthesis and maintenance [Ralstonia solanacearum CMR15] Length = 447 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 151/468 (32%), Positives = 237/468 (50%), Gaps = 31/468 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+ + F +DT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGERPFIAIDTGGFEPVA 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I +M QT A+ EA +++F++D + G+ P D I +LRK I++ NK + Sbjct: 65 KEGIVAEMAKQTRQAVVEADVVIFIVDGRLGLAPQDRVIADYLRKTGRRILLAVNKAEGM 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + Y L + IS+ H G EL + + P E+ E + ++ Sbjct: 125 KYTAVATDFYELGLGDPRAISSAHGDGVRELVDEALDLAFAERP----ELAEAAEGHDHG 180 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 RIA+VGRPNVGKSTL+N L+G R++ G TRD++ + Sbjct: 181 -------------------TRIAIVGRPNVGKSTLVNALIGEERVIAFDMPGTTRDAIYV 221 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + P + DTAG+RK ++ E++E+ +V K++QS+ ++LLDA QD Sbjct: 222 DFERNGKPYTLIDTAGLRKRGKVFEAIEKFSVVKTLQSIADANVVVLLLDAQQDISDQDA 281 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSD--KLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 I + +G A+V+ +NKWD + + + D+ K L + ++ IS + Sbjct: 282 HIAGFIVESGRALVIGVNKWDGLDGHARDRIKHDMERK----LQFLSFANVHYISAKQRT 337 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKT-QLQNPPPTIFNRYNRLKYITQIQSSPP 421 G+ LM SV + ++ T L LQ + Q P +R +L+Y Q S+PP Sbjct: 338 GIGALMKSVDDAYAAAMVKLPTPKLTRVLQDAVEFQQPRRAGVSR-PKLRYAHQGGSNPP 396 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIK 469 +I + IPE+Y+R+L R R F L G P+R+ F+++KNPY + Sbjct: 397 IVVIHGNALSNIPETYRRFLEGRFRDAFQLKGTPLRIEFRTNKNPYAQ 444 >gi|160892719|ref|ZP_02073509.1| hypothetical protein CLOL250_00249 [Clostridium sp. L2-50] gi|156865760|gb|EDO59191.1| hypothetical protein CLOL250_00249 [Clostridium sp. L2-50] Length = 440 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 150/466 (32%), Positives = 242/466 (51%), Gaps = 37/466 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFN L +K+++V + PG+TRDR+Y F I+DT GI Sbjct: 6 VAIVGRPNVGKSTLFNALAGEKISIVKDTPGVTRDRIYADVSWLDYNFTIIDTGGIEPES 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + I K M +Q E+AI A +I+F+ D + G+ DH + LRK P+I+V NK+D+ Sbjct: 66 DNIILKSMREQAEIAIETADVIIFMTDVRQGLVDDDHKVVQMLRKSKKPVILVVNKVDSF 125 Query: 125 IAQRN-FYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 N YE Y+L + V IS LG ++ + F E++K EE Sbjct: 126 EKYMNDVYEFYNLGLGDPVPISGASRLGIGDMLDEVVSHFD-----------EDSKNEEE 174 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 +P RIA++G+PNVGKS++IN+LLG NR++ +G TRD++ Sbjct: 175 D----------------DRP-RIAIIGKPNVGKSSIINKLLGENRVIVSDIAGTTRDAID 217 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 DTAG+R+ S+I E +E+ ++ +++ +V C ++++DAT QD Sbjct: 218 TEIVRNGTEYVFIDTAGLRRKSKIKEDIERYSIIRTVSAVERCNVAVLVIDATEGVTDQD 277 Query: 304 LRIVDSVFNTGHAVVLALNKWDMV--SDK--LNLLQDLRTKAIKNLPQIGDIYINTISGR 359 +I G +++ +NKWD V DK +++R K + +P ++++ +G+ Sbjct: 278 AKIAGIAHERGKGMIIVVNKWDAVEKDDKTIYKFTKEIREK-LSYMPYAELLFVSAATGQ 336 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 L + + +V+E + L R+ T LN + + PPT + +L YITQ+ Sbjct: 337 RLPKLFETIDAVIENHSL---RVATGVLNEIMTEAVAMQQPPTDKGKRLKLFYITQVAVK 393 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 PP+F+IF + SY RY+ N++R F G P++ + K Sbjct: 394 PPTFVIFVNDKELMHFSYTRYIENKIREAFGFRGTPLKFIIRERKE 439 >gi|228470615|ref|ZP_04055472.1| ribosome-associated GTPase EngA [Porphyromonas uenonis 60-3] gi|228307742|gb|EEK16718.1| ribosome-associated GTPase EngA [Porphyromonas uenonis 60-3] Length = 436 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 151/453 (33%), Positives = 233/453 (51%), Gaps = 29/453 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNRL + + A+V + G TRDR YG F+IVDT G Sbjct: 5 VAIVGRPNVGKSTLFNRLTRSRQAIVTDEAGTTRDRQYGHVTWCERTFSIVDTGGWVLRS 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +++N Q +A+ EA LILF++D G+T D I LR+ + P+I+V+NK D Sbjct: 65 DDVFEEEINKQVRIAVEEADLILFVVDILNGVTDLDDEIALMLRQTSKPVILVANKADNF 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + E YSL + ISA + T +L I + ++ + PL E Sbjct: 125 TQHNDAAEFYSLGLGDPHPISAINGSSTGDLLDHILGLLPKEGNHEPL---------LEL 175 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P R A+VGRPN GKS+L+N L+G R + +SG TRDS+ Sbjct: 176 P-------------------RFAIVGRPNAGKSSLLNALIGEERNIVTDRSGTTRDSIFA 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 ++ N + DTAG+RK ++ E LE +V ++++++ + I+L+DAT E QD Sbjct: 217 EYDKYNQHFYLVDTAGIRKKGKVNEDLEYYSVIRAIRAIENADVCIMLIDATRGIEAQDA 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIK-NLPQIGDIYINTISGRTGEG 363 I + +V+ +NKWD+V DK +Q +AI+ D I IS + Sbjct: 277 NIFRVIQRNSKGLVVCVNKWDLVEDKSLPVQRTMEEAIRARFAPFTDFPIIFISALNKQR 336 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 + ++ + + TRI T LN L + PPP+I +Y ++K++ Q+ ++ P+F Sbjct: 337 ILKVIEMAQHVYDMRSTRIPTHELNQVLLPLIEKTPPPSIKGKYIKIKFVQQLPTAVPTF 396 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 + P + E YKR+L N++R N+ G PI Sbjct: 397 AFYANLPQWVREPYKRFLENQIRKNWDFCGTPI 429 >gi|260549069|ref|ZP_05823290.1| small GTP-binding domain-containing protein [Acinetobacter sp. RUH2624] gi|260407797|gb|EEX01269.1| small GTP-binding domain-containing protein [Acinetobacter sp. RUH2624] Length = 469 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 152/465 (32%), Positives = 250/465 (53%), Gaps = 33/465 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA++G PNVGKSTLFN++ K + A+V + G+TRDR YG A F +VDT GI + Sbjct: 5 IALIGRPNVGKSTLFNQITKSRDALVADFAGLTRDRKYGDATYQNKSFIVVDTGGIGE-S 63 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I M +Q++ AINEA +I+F++D++AG+ D I LR I +V+NK+D Sbjct: 64 EGGIDNYMAEQSKTAINEADIIIFVVDARAGLLASDEQIARELRTLGKKIYLVANKVDGV 123 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 A+ E Y L E ++++A H G ++ LE + + +E+ Sbjct: 124 HAEAALVEFYKLGMGEPLQVAASHGRGVQQM----------------LEDVLQDVPEDEN 167 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P+E+ G LR+A++GRPNVGKSTL+NRLLG +R++ Q G TRDS+ I Sbjct: 168 PEEHDKDTG----------LRLAIIGRPNVGKSTLVNRLLGEDRVVAFDQPGTTRDSIYI 217 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + + DTAG+R+ ++ E +E+ ++ K++Q+++ +V++DA +QDL Sbjct: 218 PFEREGRKYTLIDTAGVRRKGKVDEMIEKFSIVKTLQAMKDAHVVVVVVDAREGIVEQDL 277 Query: 305 RIVDSVFNTGHAVVLALNKWDMVS--DKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 ++ G A+V+A+NKWD +S D+ D+ + I I+ IS G Sbjct: 278 HLIGYALEAGRAMVIAINKWDNMSEYDRKQCKLDVE----RRFDFIPWAKIHLISALHGT 333 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 G+ +L S+ + +++ + L L + PP I R +++Y +PP+ Sbjct: 334 GVGELYPSIHRAYESANLKVSPAKLTQILSDATEAHQPPMISGRRIKMRYAHMGGQNPPT 393 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 +I +K P Y+RYL N R + L G P+R+ F++S+NP+ Sbjct: 394 IVIHGNKVDKTPADYRRYLENVFRKVYKLEGTPVRIDFKTSENPF 438 >gi|225021514|ref|ZP_03710706.1| hypothetical protein CORMATOL_01535 [Corynebacterium matruchotii ATCC 33806] gi|224945896|gb|EEG27105.1| hypothetical protein CORMATOL_01535 [Corynebacterium matruchotii ATCC 33806] Length = 484 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 146/463 (31%), Positives = 241/463 (52%), Gaps = 42/463 (9%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI- 60 + T+AIVG PNVGKSTL NR + ++ AVV + PG+TRDR+ A G F + DT G Sbjct: 50 LCTVAIVGRPNVGKSTLVNRFLGRREAVVEDFPGVTRDRISYIADWGGQRFWVQDTGGWD 109 Query: 61 --ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVS 118 G + +IA+Q E A+ A +I+ ++D+K GIT D + L ++P+I+V+ Sbjct: 110 PNVKGIHGAIARQ----AETAMETADVIVMVVDTKVGITETDAVMARKLHGASVPVILVA 165 Query: 119 NKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 NK D+ + + E Y+L + +SA+H G +++ I + F Sbjct: 166 NKFDSDMQYADMAEFYALGLGDPWPVSAQHGRGGADVLDEILRSFP-------------- 211 Query: 179 KRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 + P++ +EG P R+A+VG+PNVGKS+L+N++ G R + +G T Sbjct: 212 ----DQPRQPSITEG---------PRRVALVGKPNVGKSSLLNKIAGEERSVVDDVAGTT 258 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 D V H + DTAG+RK + + E ++ + E + ++D++ P Sbjct: 259 VDPVDSLVQLDGHLWKFIDTAGLRKKVKNAQGHEYYASLRTRGVIDAAEVCLFMIDSSEP 318 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSD--KLNLLQDLRTKAIKNLPQIGDIYINTI 356 +QD R++ + + G A+VL NKWD++++ + L +D+ + + ++P + + I+ Sbjct: 319 VSEQDQRVLSMILDAGKALVLVFNKWDLMTEDRRWELERDIEQQ-LAHIPWVRRVNISAK 377 Query: 357 SGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQI 416 +GR + L+ M LE W RITT LN+WL+ T QNPPP R R+ + TQ Sbjct: 378 TGRALQKLEPYMEEALEN---WDKRITTGQLNTWLRATMAQNPPPMKGGRIPRVLFATQA 434 Query: 417 QSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 + PP ++F T + Y+RYL + R F G P+R+ Sbjct: 435 STQPPVIVLFTT--GFLDAGYRRYLERKFREAFGFEGTPVRIA 475 >gi|83319844|ref|YP_424546.1| GTP-binding protein EngA [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|123535633|sp|Q2SRR7|DER_MYCCT RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|83283730|gb|ABC01662.1| GTP-binding protein engA [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 435 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 151/466 (32%), Positives = 255/466 (54%), Gaps = 42/466 (9%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKS+LFNR++K+K ++V N PG+TRDR+Y A F ++DT GI+ + Sbjct: 6 VAIVGKPNVGKSSLFNRIIKEKKSIVDNKPGVTRDRIYSNAEWLTREFILIDTGGISVDQ 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + ++ QT++AI +A +I+F++D + D I L K P+I+ NK D + Sbjct: 66 QL-FSNEIQIQTQIAIEQADVIIFVVDFLNRLDKDDKIIAKILHKSKKPVILAINKYDKK 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + YE +L F ++ IS+ H +G +L ++I +N+ Sbjct: 125 TIDEHNYEFMNLGFSDLYFISSTHGIGIGDLLD---------------KVISYISKNDVE 169 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 K++ T +IA++G+PNVGKS+L+N L+ NR++ G T D+V I Sbjct: 170 LKDDST--------------KIAIIGKPNVGKSSLVNSLVNENRMIVSEIEGTTLDAVDI 215 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 S+++ + DTAG+RK S++ +++E+ + +S+ ++ + ++++DAT P QD Sbjct: 216 SFSYNKKKYIVIDTAGIRKKSKLGQTVEKYSYLRSLSAIANSDIVLLMIDATKPITDQDT 275 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDK----LNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 I +++ V++ +NKWD++ +K L +++R K L I+I+ + Sbjct: 276 NIGGLIYDEKKPVIIVVNKWDLIKNKQEQILKKEEEIRA-YFKYLSYAKIIFISALDKTR 334 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLK--YITQIQS 418 + DL + EI + ++ T LN L K QL NP P FN NRLK Y +Q+Q+ Sbjct: 335 VTKILDL---IDEIKQSLSVKVKTYVLNEVLNKAQLINPAPE-FNG-NRLKIYYASQVQA 389 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 P+F++FC PN + SYKR+L N++R +F IPI + F+ K Sbjct: 390 YIPTFVLFCNNPNYLHFSYKRFLENQIRFSFGFDSIPINLIFRERK 435 >gi|149183701|ref|ZP_01862112.1| GTP-binding protein EngA [Bacillus sp. SG-1] gi|148848583|gb|EDL62822.1| GTP-binding protein EngA [Bacillus sp. SG-1] Length = 436 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 144/463 (31%), Positives = 243/463 (52%), Gaps = 33/463 (7%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 +AIVG PNVGKST+FNR+V +++++V + PG+TRDR+Y A FNI+DT GI G Sbjct: 5 VVAIVGRPNVGKSTIFNRIVGERISIVEDVPGVTRDRIYSSADWLTHDFNIIDTGGIEIG 64 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + +Q+ Q E+AI+EA +I+FL + + G+T D + L + P+++ NK+D Sbjct: 65 DEPFL-EQIRQQAEIAIDEADVIVFLTNGREGVTAADEIVAKILYRSKKPVVLAVNKIDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + Y+ YSL F E IS H +G ++ + K FK K + E Sbjct: 124 PEMRELVYDFYSLGFGEPFPISGAHGIGLGDMLDEVAKNFK--------------KDSGE 169 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 E++ ++ +++GRPNVGKS+L+N LLG +R++ + +G TRD++ Sbjct: 170 GYAEDV--------------IKFSLIGRPNVGKSSLVNALLGEDRVIVSNVAGTTRDAID 215 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 I DTAGMRK ++ ES E+ +V ++++++ + +V++D +QD Sbjct: 216 SKLKVDGQEYVIIDTAGMRKKGKVYESTEKYSVLRALRAIERSDVVLVVIDGEEGIIEQD 275 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 +I G V++ +NKWD V ++ ++ + I +S +T Sbjct: 276 KKIAGYAHEAGRGVIIVVNKWDAVEKDEKTMKKFEENIREHFLFLDYAPIIFLSAKTKRR 335 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLK--YITQIQSSPP 421 + L+ + ++++ R+ +S LN + NP PT ++ RLK Y TQ+ PP Sbjct: 336 IHTLIPVIDQVSENHALRVQSSVLNEVIADAVAMNPTPT--DKGKRLKVFYATQVAVKPP 393 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 +F++F P + SY R+L NR+R F G PIR+ ++ K Sbjct: 394 TFVVFVNEPELMHFSYSRFLENRIREAFVFEGTPIRIIARARK 436 >gi|88810613|ref|ZP_01125870.1| GTP-binding protein EngA [Nitrococcus mobilis Nb-231] gi|88792243|gb|EAR23353.1| GTP-binding protein EngA [Nitrococcus mobilis Nb-231] Length = 476 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 157/466 (33%), Positives = 247/466 (53%), Gaps = 23/466 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 I +VG PNVGKSTLFN L + + A+V + P +TRDR YG+ I + +VDT G+ G Sbjct: 5 IVLVGRPNVGKSTLFNCLTRSRDALVADFPELTRDRQYGRGRIGPCAYIVVDTGGMGQG- 63 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N +I++ + Q AI +A +LFL+D+++G T D A+ LR + + +V NK+D Sbjct: 64 NGAISEGVQAQARQAIAQADAVLFLVDARSGPTAADEALAGELRAQGKQLFLVPNKVDGL 123 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 A+ + Y+L + I+A H G + L + + Q E++E R + Sbjct: 124 DARVVAADFYTLGLGDPHPIAAAHGTGVARLMASVL----QGMTAAVNEVVEPPYRRD-- 177 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 ++V+ I R+A+VGRPNVGKSTLINRLLG R+L Q G TRDS+ I Sbjct: 178 ----------TAVERI----RVAIVGRPNVGKSTLINRLLGEERVLVHDQPGTTRDSIFI 223 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + DTAGMR+ SR+ E++E+ + K++Q+V + I+LLDA +QD+ Sbjct: 224 PFERDGFAYTLIDTAGMRRRSRVYEAVEKFSAIKTLQAVTAAQVVILLLDAHESITEQDV 283 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 RI+ V + G A+VLA+NKWD + + +R + L + + IS G G+ Sbjct: 284 RIIGYVLDAGRALVLAVNKWDGLEPSRR--EQIRRGLERKLGFLDFAKLYFISALYGTGV 341 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 L +V + ++ T LN L + + PP + R +L+Y Q +PP + Sbjct: 342 GLLYGAVQQAYASSCRKLDTPQLNRILTEAVAAHQPPLVRGRRVKLRYAHQGGRNPPVIV 401 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 I ++ +Y+RYL+N + L G PIR+ ++ NPY + Sbjct: 402 IHGNQTARLTSAYRRYLVNIFQRQLGLWGTPIRLELRAGSNPYAGR 447 >gi|300741227|ref|ZP_07071248.1| ribosome-associated GTPase EngA [Rothia dentocariosa M567] gi|300380412|gb|EFJ76974.1| ribosome-associated GTPase EngA [Rothia dentocariosa M567] Length = 529 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 143/461 (31%), Positives = 243/461 (52%), Gaps = 38/461 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST+ NR++ ++ AVV + PG+TRDR+ +A G F +VDT G + Sbjct: 78 VAIVGRPNVGKSTIINRILGRREAVVEDKPGVTRDRVSYKAEWVGKRFTLVDTGGW-ESD 136 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I Q+ DQ E+A+ +A +++ ++D++ GIT D I LR+ PII+++NK+D Sbjct: 137 ARGIDAQVADQAEIAVEQADVVILVVDARVGITASDEQIVRMLRRVKKPIILMANKIDDS 196 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + Y ++SL + +S H G ++ + ++ P H + E+ Sbjct: 197 HLEPEIYSLWSLGMGQPFPVSGLHGRGLADALDELLEVM----PEH------SQYAQPEA 246 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P P R+A++GRPNVGKS+L+N+L G R + +G TRD + Sbjct: 247 P---------------GGPRRVALIGRPNVGKSSLLNKLAGSERAVVNDLAGTTRDPIDE 291 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 +P DTAG+R+ + + E + ++ ++ E +VLLD + P +QD+ Sbjct: 292 VIELGGYPWRFIDTAGIRRRQHMAKGAEFYSSLRTQTALERSEVAVVLLDVSEPLSEQDV 351 Query: 305 RIVDSVFNTGHAVVLALNKWDMV-SDKLNLLQ---DLRTKAIKNLPQIGDIYINTISGRT 360 RI+ + ++G A+VLA NKWD + ++ ++L+ D +K P++ IS +T Sbjct: 352 RIIQTTIDSGRAMVLAFNKWDTLDEERRDMLEREIDRDLAHVKWAPRV------NISAKT 405 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G D L+ ++ + W +RI T LN++L + +P P + R+ + TQ+ S P Sbjct: 406 GWHKDKLVPALERSLESWDSRIPTGRLNAFLGELAAAHPHPLRGGKQPRILFGTQVSSRP 465 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 P F++F T + Y+R++ RLR F +G PI + + Sbjct: 466 PKFVLFTT--GFLDPGYRRFITRRLRETFEFTGTPIEISMR 504 >gi|326384755|ref|ZP_08206432.1| GTP-binding protein Der [Gordonia neofelifaecis NRRL B-59395] gi|326196563|gb|EGD53760.1| GTP-binding protein Der [Gordonia neofelifaecis NRRL B-59395] Length = 479 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 144/456 (31%), Positives = 236/456 (51%), Gaps = 36/456 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA-DG 63 +AIVG PNVGKSTL NR++ ++ AVV + PG+TRDR+ +A G F + DT G D Sbjct: 46 LAIVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYKAEWTGKQFMVTDTGGWEPDA 105 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 K +A + Q E A+ A I+ ++D+ G T D A+ LR+ P+++ +NK+D+ Sbjct: 106 KGMGLA--IAAQAEYAMRTADAIVVVVDATVGATATDEAVARVLRRSKTPVLLAANKVDS 163 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + ++SL E + ISA H GT +L I E Sbjct: 164 ERMEAEAASLWSLGLGEPITISAAHGRGTGDLLDKILDALP------------------E 205 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 +P+E + P R+A+VG+PNVGKS+L+N+L G R + + +G T D V Sbjct: 206 TPRERFA---------VGGPRRVALVGKPNVGKSSLLNKLAGEERAVVDNVAGTTVDPVD 256 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 P + DTAG+R+ R E ++ ++ + E ++L+DA+ +QD Sbjct: 257 EMIELGGKPWQFVDTAGLRRKVRNATGHEYYASLRTRAALDSAEVALLLIDASQTITEQD 316 Query: 304 LRIVDSVFNTGHAVVLALNKWDMV-SDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 LR++ + ++G A+V+ NKWD+V D+ + L + + + +P + I+ ++GR+ + Sbjct: 317 LRVLSMIIDSGRALVVVFNKWDLVDEDRRHELDNEIDRELARVPWARRVNISAMTGRSVQ 376 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 L + LE W RI+T LN+WL++ PPP R R+ + TQ + PP+ Sbjct: 377 KLVPALEGALES---WDKRISTGQLNTWLKEIIAATPPPVRGGRQPRVMFATQAATRPPT 433 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 F++F T + Y+R+L +LR F G P+R+ Sbjct: 434 FVLFTT--GFLEAGYRRFLERKLRETFGFDGSPVRI 467 >gi|325289812|ref|YP_004265993.1| GTP-binding protein engA [Syntrophobotulus glycolicus DSM 8271] gi|324965213|gb|ADY55992.1| GTP-binding protein engA [Syntrophobotulus glycolicus DSM 8271] Length = 443 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 145/462 (31%), Positives = 245/462 (53%), Gaps = 30/462 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA-DG 63 +AIVG PNVGKSTLFNR+V + +A+V N PG+TRDRLY +A F ++DT GI Sbjct: 6 VAIVGRPNVGKSTLFNRVVGRMIAIVENTPGVTRDRLYFEAQWLNRNFTLIDTGGIEFKD 65 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 ++ ++ M Q E+A+ EA +++F++D K T D + FLR P+++V NK++ Sbjct: 66 QSTPLSSLMKQQAEIAVEEADVVVFVLDGKTKATVEDEMVAKFLRSSGKPVVLVVNKVEN 125 Query: 124 -RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 + + YE L F E + +SA H + ++ + + N P Sbjct: 126 FKNYEVESYEYLELGFGEPIPVSAAHGMNIGDMLDKVVE-------NLP----------- 167 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 E E+++ + ++IAV+GRPNVGKS+L+N+++G R++ +G TRD++ Sbjct: 168 EDDSEDVSPD----------VIKIAVIGRPNVGKSSLVNKMVGEERVIVSDIAGTTRDAI 217 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + +++ + DTAG+R+ +I E E +V +S +++ + +++LDA Q Sbjct: 218 DTPFRFEDRDYVLIDTAGIRRRKKIAELTENYSVIRSFRAIDRADVVLMMLDAVEGVTDQ 277 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D RI G A++L +NKWD++ + + L + IS +TG+ Sbjct: 278 DKRIAGYAHEAGKAIILVINKWDLIEKDDKTINRFERDIREELAFMAYAPTQFISAKTGQ 337 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 + ++ V + + RI TS LN+ L++ NPPP+ + ++ Y TQ + PP+ Sbjct: 338 RVHKIIELVDFVAEQNCHRILTSTLNNELREWLYLNPPPSDKGKRLKILYATQREVKPPT 397 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 F+ F P + SY+RYL N+LR F G PI+M + +K Sbjct: 398 FIFFVNDPELMHFSYQRYLENQLRKTFGFEGSPIKMIVRRNK 439 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 40/128 (31%), Positives = 66/128 (51%), Gaps = 12/128 (9%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + IA++G PNVGKS+L N++V ++ +V + G TRD + + ++DTAGI Sbjct: 178 VIKIAVIGRPNVGKSSLVNKMVGEERVIVSDIAGTTRDAIDTPFRFEDRDYVLIDTAGIR 237 Query: 62 DGK-------NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPI 114 K N S+ + AI+ A ++L ++D+ G+T D I + + I Sbjct: 238 RRKKIAELTENYSVIRSFR-----AIDRADVVLMMLDAVEGVTDQDKRIAGYAHEAGKAI 292 Query: 115 IIVSNKMD 122 I+V NK D Sbjct: 293 ILVINKWD 300 >gi|320335804|ref|YP_004172515.1| GTP-binding protein engA [Deinococcus maricopensis DSM 21211] gi|319757093|gb|ADV68850.1| GTP-binding protein engA [Deinococcus maricopensis DSM 21211] Length = 441 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 139/466 (29%), Positives = 251/466 (53%), Gaps = 49/466 (10%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 ++ +AIVG PNVGKS+LFNRLV ++ AVV + PG+TRD G + ++DT G+ Sbjct: 1 MHKVAIVGRPNVGKSSLFNRLVGRREAVVADFPGVTRDAKEGVMLYQNHRIVLIDTGGLW 60 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 G A + + E A+ A ++F++D + ++ D+ + +LR+ P+I+V+NK+ Sbjct: 61 SGDEWEEA--IRQKAEWAMEGAQCVIFVLDPRDDLSAADYEVAEWLRRLGKPVIVVANKI 118 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D E++ L F E + +SAEH G +L + Sbjct: 119 DNPKHDAYLAELWGLGFGEPLPVSAEHARGLDDLMDRVL--------------------- 157 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 + E + V ++ P+RI+++GRPNVGKS+L+N + G R++ G TRDS Sbjct: 158 ------DYLPEDDADVPEVA-PIRISLIGRPNVGKSSLLNAITGSERVIVSDVPGTTRDS 210 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 V + W++ + DTAG+RK R S+E+ + +S ++ + +++L+ T Sbjct: 211 VDVEWDYAGQRFVLVDTAGIRK--RPDTSIEEYAMMRSEAAITRSDVILLVLNVT-ELGD 267 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQ-------IGDIYIN 354 +L++ + +++G V++ +NKWD+V D +DL+ KA K+L Q +Y + Sbjct: 268 HELKLANLAYDSGKPVIVVVNKWDLVPD-----EDLK-KAEKDLDQKLFHIAFAPRVYTS 321 Query: 355 TISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYIT 414 I+ G+ DL+ +++ W++RI TS LN WL Q++ P + ++ ++T Sbjct: 322 AINEY---GIHDLLAEAMKLYAKWQSRIPTSELNRWLGVWQMRQRVPNFHGKQLKMYFMT 378 Query: 415 QIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCF 460 Q +++PP+F+IF + + SY+ +L NR+R + L+GIP+++ + Sbjct: 379 QAETAPPTFVIFANRADYVTRSYENFLHNRIREDLQLAGIPVKIVW 424 >gi|300691802|ref|YP_003752797.1| GTPase involved in ribosome synthesis and maintenance [Ralstonia solanacearum PSI07] gi|299078862|emb|CBJ51523.1| GTPase involved in ribosome synthesis and maintenance [Ralstonia solanacearum PSI07] Length = 447 Score = 247 bits (631), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 151/468 (32%), Positives = 238/468 (50%), Gaps = 31/468 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+ + F +DT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRSRDALVADIPGLTRDRHYGEGRVGERPFIAIDTGGFEPVA 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I +M QT A+ EA +++F++D + G+ P D I +LRK I++ NK + Sbjct: 65 KEGIVAEMAKQTRQAVVEADVVIFIVDGRLGLAPQDRVIADYLRKTGRRILLAVNKAEGM 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + Y L + IS+ H G +L + + P E+ E Sbjct: 125 KYTAVATDFYELGLGDPRAISSAHGDGVRDLVDEALDLAFAERP----ELAE-------- 172 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 + ++ RIA+VGRPNVGKSTL+N L+G R++ G TRD++ + Sbjct: 173 -----------AAEDHGYGTRIAIVGRPNVGKSTLVNALIGEERVIAFDMPGTTRDAIYV 221 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + P + DTAG+RK ++ E++E+ +V K++QS+ ++LLDA QD Sbjct: 222 DFERNGKPYTLIDTAGLRKRGKVFEAIEKFSVVKTLQSIADANVVVLLLDAQQDISDQDA 281 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSD--KLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 I + +G A+V+ +NKWD + + + DL K L + ++ IS + Sbjct: 282 HIAGFIVESGRALVIGVNKWDGLDGHARDRIKHDLERK----LQFLSFANVHYISAKQRS 337 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKT-QLQNPPPTIFNRYNRLKYITQIQSSPP 421 G+ LM SV + ++ T L LQ+ + Q P +R +L+Y Q S+PP Sbjct: 338 GIGALMKSVDDAYAAAMVKLPTPKLTRVLQEAVEFQQPRRAGVSR-PKLRYAHQGGSNPP 396 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIK 469 +I + IPE+Y+R+L R R F L G P+R+ F+++KNPY + Sbjct: 397 IVVIHGNALSNIPETYRRFLEGRFRDAFQLKGTPLRIEFRTNKNPYAQ 444 >gi|121535817|ref|ZP_01667617.1| small GTP-binding protein [Thermosinus carboxydivorans Nor1] gi|121305589|gb|EAX46531.1| small GTP-binding protein [Thermosinus carboxydivorans Nor1] Length = 440 Score = 247 bits (631), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 147/469 (31%), Positives = 247/469 (52%), Gaps = 44/469 (9%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFN + KK++++V + PG+TRDR+Y A G F ++DT GI Sbjct: 6 VAIVGRPNVGKSTLFNFIAKKRVSIVEDLPGVTRDRIYMDAEWLGREFTMIDTGGIEIET 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I Q +LAI EA +I+F++D K GIT D + + LR P+++ NK+D+ Sbjct: 66 TDRILAATRHQAQLAIEEADVIIFVVDGKTGITTADEEVAAMLRSTRKPVVLAVNKIDSP 125 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + YE Y+L + + ISA + L +L + ++ Q E+ + +++ Sbjct: 126 KDEPAVYEFYNLGLGDPIAISATNALSIGDLLDRVIELLPQT---------EDAEEDDDV 176 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 +++A +GRPNVGKS+L+N LLG R++ G TRD++ Sbjct: 177 -------------------IKVAFIGRPNVGKSSLVNALLGEERVIVSDIPGTTRDAIDT 217 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + DTAGMR+ +RI + +E+ +V +S+++V + +V++DA +QD Sbjct: 218 YFEKDGTKFILIDTAGMRRKARINQPVERYSVIRSLRAVERADVVLVVIDAVDGVTEQDK 277 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSD----KLNLLQDLRTKA--IKNLPQIGDIYINTISG 358 +I G +++ +NKWD++ L +++R++ I+ P ++ + ++ Sbjct: 278 KIAGYAHEAGRGIIIVVNKWDLIEKDSKTALRYTENIRSEMAFIQYAPV---LFTSALTK 334 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLK--YITQI 416 + + + +L+ V E + + R+ TS LN ++ NPPPT R RLK Y TQ Sbjct: 335 QRVQRISELVKFVAEQHAM---RVQTSVLNQVIEDAIRINPPPT--GRGTRLKIFYTTQA 389 Query: 417 QSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 + PP+F+ F P + SY RYL N+LR F G P+R+ + K Sbjct: 390 EVKPPTFIFFVNEPEIMHFSYLRYLENKLREAFGFEGTPLRLVVRGRKE 438 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 40/123 (32%), Positives = 66/123 (53%), Gaps = 2/123 (1%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + +A +G PNVGKS+L N L+ ++ +V + PG TRD + +G F ++DTAG+ Sbjct: 176 VIKVAFIGRPNVGKSSLVNALLGEERVIVSDIPGTTRDAIDTYFEKDGTKFILIDTAGMR 235 Query: 62 DGK--NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 N + + ++ A+ A ++L +ID+ G+T D I + + IIIV N Sbjct: 236 RKARINQPVERYSVIRSLRAVERADVVLVVIDAVDGVTEQDKKIAGYAHEAGRGIIIVVN 295 Query: 120 KMD 122 K D Sbjct: 296 KWD 298 >gi|241662759|ref|YP_002981119.1| GTP-binding protein EngA [Ralstonia pickettii 12D] gi|240864786|gb|ACS62447.1| small GTP-binding protein [Ralstonia pickettii 12D] Length = 447 Score = 247 bits (631), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 150/466 (32%), Positives = 237/466 (50%), Gaps = 31/466 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+ + F +DT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRSRDALVADIPGLTRDRHYGEGRVGDRPFIAIDTGGFEPVA 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I +M QT A+ EA +++F++D + G+ P D I +LRK I++ NK + Sbjct: 65 KEGIVAEMAKQTRQAVVEADVVIFIVDGRLGLAPQDRVIADYLRKTGRRILLAVNKAEGM 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + Y L + ISA H G ++L + + + P E+ E ++ Sbjct: 125 RYTAVASDFYELGLGDPAAISAAHGDGVNDLVAEALDLAFAERP----ELAEAADAHDHG 180 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 RIA+VGRPNVGKSTL+N L+G R++ G TRD++ + Sbjct: 181 -------------------TRIAIVGRPNVGKSTLVNALIGEERVIAFDMPGTTRDAIYV 221 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + P + DTAG+RK ++ E++E+ +V K++QS+ +++LDA QD Sbjct: 222 DFERNGKPYTLIDTAGLRKRGKVFEAIEKFSVVKTLQSIADANVVVLILDAQQDISDQDA 281 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSD--KLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 I + +G A+V+ +NKWD ++ + + D+ K L + ++ IS + Sbjct: 282 HIAGFIVESGRALVIGVNKWDGLTGHARDRIKHDMERK----LQFLSFANVHYISAKERT 337 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWL-QKTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 G+ LM SV ++ T L L + + Q P +R +L+Y Q S+PP Sbjct: 338 GIGALMKSVDAAYAAAMVKLPTPKLTRVLMEAVEYQQPRRAGVSR-PKLRYAHQGGSNPP 396 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 +I + IPE+Y+RYL R R F L G P+R+ F+++KNPY Sbjct: 397 IVVIHGNALSNIPETYRRYLEGRFREAFQLKGTPLRIEFRTNKNPY 442 >gi|282855425|ref|ZP_06264746.1| ribosome-associated GTPase EngA [Pyramidobacter piscolens W5455] gi|282586721|gb|EFB91968.1| ribosome-associated GTPase EngA [Pyramidobacter piscolens W5455] Length = 443 Score = 247 bits (631), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 147/468 (31%), Positives = 248/468 (52%), Gaps = 44/468 (9%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 ++IVG PNVGKS+LFNR++ ++ A+V + PG+TRDRLYG F +VDT G+ Sbjct: 4 VSIVGRPNVGKSSLFNRIIGERRAIVDDMPGVTRDRLYGCVQWKDKSFYVVDTGGLLLKD 63 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I + M DQ AI E+ +++F++D G+T D + LR + +I+ NK+D Sbjct: 64 KDPIMEGMKDQIFQAIEESDVVIFMVDGSRGVTWMDEDVAQVLRSHSSMVILAVNKIDDF 123 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + E YSL F+++V +SA HD G EL + ++ +K +E+ Sbjct: 124 SHEDDVAEAYSLGFEKVVGVSALHDRGIDELLDQVVQML-------------GDKEDEQG 170 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P+E + S +A+VGRPNVGKS+++N L G R L G TRDS+ Sbjct: 171 PEEGVIS--------------VALVGRPNVGKSSILNALTGSQRSLVSDIPGTTRDSIDA 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 +K I DTAG+R+ SR+ + +E + ++M +V C+ I ++D +QD Sbjct: 217 VLEYKGERFRIVDTAGLRRKSRVKDDIEFYSTVRTMDAVDQCDVAIFVMDVRELATEQDQ 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMV------SDKLN--LLQDLRTKAIKNLPQIGDIYINTI 356 R+V + G VVL +NKWD++ D++N L ++ R + + ++ + + Sbjct: 277 RLVGEILARGKGVVLVVNKWDLLPNTPETGDEVNGKLREEFRFASHAPV-----LFTSAV 331 Query: 357 SGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTI-FNRYNRLKYITQ 415 SGR L DL V ++++ ++R +T+ LN ++ + PT R R+ Y TQ Sbjct: 332 SGRRLHRLLDL---VSQVHRRRQSRFSTTVLNRIIRDMLAFDRLPTDGTGRRLRIYYCTQ 388 Query: 416 IQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSS 463 + PP+F+ F P + +S++ +L ++R G+P+R+ ++SS Sbjct: 389 SAAVPPTFIFFVNDPAIVTKSFENHLSRKIREAGDFDGVPLRLFWRSS 436 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 37/128 (28%), Positives = 66/128 (51%), Gaps = 12/128 (9%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI- 60 + ++A+VG PNVGKS++ N L + ++V + PG TRD + G F IVDTAG+ Sbjct: 175 VISVALVGRPNVGKSSILNALTGSQRSLVSDIPGTTRDSIDAVLEYKGERFRIVDTAGLR 234 Query: 61 ------ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPI 114 D + S + M+ A+++ + +F++D + T D + + + + Sbjct: 235 RKSRVKDDIEFYSTVRTMD-----AVDQCDVAIFVMDVRELATEQDQRLVGEILARGKGV 289 Query: 115 IIVSNKMD 122 ++V NK D Sbjct: 290 VLVVNKWD 297 >gi|330686012|gb|EGG97635.1| ribosome biogenesis GTPase Der [Staphylococcus epidermidis VCU121] Length = 436 Score = 247 bits (631), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 140/455 (30%), Positives = 231/455 (50%), Gaps = 29/455 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST+FNR+V +++++V + PG+TRDR+Y FNI+DT GI G Sbjct: 6 VAIVGKPNVGKSTIFNRVVGERVSIVEDTPGVTRDRIYSSGEWLTHEFNIIDTGGIEIG- 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + Q+ Q E+AI EA +I+F+++ + G+T D + L K P+++ NK+D Sbjct: 65 DAPFQTQIRAQAEIAIEEADVIVFMVNVREGLTQSDEMVAQMLYKSKKPVVLAVNKVDNV 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + Y+ YSL F E IS H LG +L + + F ++ Sbjct: 125 EMRNDIYDFYSLGFGEPYPISGSHGLGLGDLLDAVVENFGEE------------------ 166 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 +R++++GRPNVGKS+L+N +LG R++ + +G TRD+V Sbjct: 167 ----------EEDPYDDDTIRLSIIGRPNVGKSSLVNAILGEERVIVSNVAGTTRDAVDT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 +++ + DTAGMRK ++ ES E+ +V ++++++ +V++DA +QD Sbjct: 217 EYSYDGQDYVLIDTAGMRKKGKVYESTEKYSVLRALKAIERSNVVLVVIDAEQGIIEQDK 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 R+ G A+V+ +NKWD V ++ K + I +S + L Sbjct: 277 RVAGYAHEEGKAIVIVVNKWDTVEKDSKTMKKFTEDVRKEFQFLDYAQIAFVSAKEQLRL 336 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 L + E ++ K R+ +S LN + NP PT R + Y TQ+ PP+F+ Sbjct: 337 KTLFPYIKEASENHKKRVQSSTLNEVITDAISMNPTPTDKGRRLNVFYSTQVAIEPPTFV 396 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 +F + SYKRYL N++R F G P+ + Sbjct: 397 VFVNDVELMHFSYKRYLENQIRHAFGFEGTPVHII 431 >gi|147677944|ref|YP_001212159.1| GTP-binding protein EngA [Pelotomaculum thermopropionicum SI] gi|189037152|sp|A5D1U6|DER_PELTS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|146274041|dbj|BAF59790.1| predicted GTPase [Pelotomaculum thermopropionicum SI] Length = 440 Score = 247 bits (631), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 150/457 (32%), Positives = 239/457 (52%), Gaps = 28/457 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNR+V ++A+V PG+TRDRLY A +G F +VDT G+ + Sbjct: 6 VAIVGRPNVGKSTLFNRIVGNRVAIVEGEPGVTRDRLYQDAEWSGRSFTLVDTGGLDFKE 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + I + + Q E+AI EA +L ++D+KAG+ P D + S +R+ P ++V+NK++ Sbjct: 66 SDEIIQGVRRQAEIAIREADAVLLVVDAKAGLNPGDEEVASIIRRAEKPALLVANKVEKF 125 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + Y+ Y L + + +SA L T +L + +EM+ K +E Sbjct: 126 DSLEQIYDFYRLGLGDPLPVSAAEGLNTGDLLDRL------------VEMLPPEKEDEYP 173 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P+ ++IAV+GRPNVGKS+L+N +LG R++ + G TRD++ Sbjct: 174 PEA----------------IKIAVIGRPNVGKSSLVNLILGEERVIVSNVPGTTRDAIDT 217 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + I DTAGMR+ SRI E+ V ++++++ + +V+LDA QD Sbjct: 218 PFEANGRHYVIIDTAGMRRKSRIDRPTEKYGVIRALRAIDRSDVVLVVLDAVEGVTDQDK 277 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 RI G A V+ +NKWD+V + + K + L + + S TG+ + Sbjct: 278 RIAGYAHEAGKASVIVVNKWDLVEKDGHTMNRYTEKIREELAFMHYSPLLFTSAATGKRV 337 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 +M V + RI+T LN+ +++ L+ PPP+ R ++ Y Q PP F+ Sbjct: 338 GKIMELVDMVAGRHSMRISTPGLNALIREAVLRTPPPSDKGRRLKITYAVQGGIKPPKFV 397 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 +F P+ + SY RYL N++R F G PIR + Sbjct: 398 LFVNAPDLMHFSYLRYLENQIRAAFGFEGTPIRFVLR 434 >gi|317128566|ref|YP_004094848.1| ribosome-associated GTPase EngA [Bacillus cellulosilyticus DSM 2522] gi|315473514|gb|ADU30117.1| ribosome-associated GTPase EngA [Bacillus cellulosilyticus DSM 2522] Length = 438 Score = 247 bits (631), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 152/461 (32%), Positives = 241/461 (52%), Gaps = 38/461 (8%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 +AIVG PNVGKST+FNR+V +++A+V + PG+TRDR+Y A FNI+DT GI + Sbjct: 5 VLAIVGRPNVGKSTIFNRIVGERIAIVEDKPGVTRDRIYSSAEWLNKEFNIIDTGGI-EI 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + + QM Q ELAI EA +I F+++ + GIT D + L + PI++ NKMD Sbjct: 64 NDEPLMVQMRYQAELAIEEADVICFIVNGREGITSADEEVAQILFRSKKPIVLGVNKMDD 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 YE YSL + IS H +G +L + K F Sbjct: 124 PSMHDRLYEFYSLGIGDPKPISGSHGIGLGDLLDEVIKQFP------------------- 164 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 S E++ E +RI+++GRPNVGKS+L N +LG R++ G TRD++ Sbjct: 165 SQTEDVYDE---------DTIRISIIGRPNVGKSSLTNAILGEERVIVSDIPGTTRDAID 215 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 ++ + DTAGMRK ++ ES E+ +V ++++++ + +++++ +QD Sbjct: 216 TPFSKDGQDYVVIDTAGMRKKGKVYESTEKYSVLRALRAIERSDVVLMVINGEEGMIEQD 275 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVS--DK--LNLLQDLRTKAIKNLPQIGDIYINTISGR 359 +I G AV+L +NKWD+V DK LN Q LR + + + I +S + Sbjct: 276 KKIAGYAHEAGRAVILVVNKWDVVEKDDKTMLNFEQKLREEFL----YLSYAPIIFLSAK 331 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTI-FNRYNRLKYITQIQS 418 T + L+ V E+++ R+ T LN + NP PT + R+ Y TQ+ Sbjct: 332 TKRRMQHLLPLVNEVSENHNLRVQTHVLNDVIVDAVTMNPAPTDNGGKRLRINYATQVAV 391 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 +PP+F++F P + SY+R+L N++R F+ G PIR+ Sbjct: 392 APPTFVLFVNDPELLHFSYRRFLENKIRETFNFKGTPIRII 432 >gi|257869556|ref|ZP_05649209.1| GTP-binding protein engA [Enterococcus gallinarum EG2] gi|257803720|gb|EEV32542.1| GTP-binding protein engA [Enterococcus gallinarum EG2] Length = 436 Score = 247 bits (631), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 142/457 (31%), Positives = 236/457 (51%), Gaps = 31/457 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAIVG PNVGKST+FNR+ +++++V + PG+TRDR+Y G F+I+DT GI D Sbjct: 5 TIAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYATGEWLGREFSIIDTGGI-DL 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + Q+ Q E+AI+EA +I+F+ ++ G+T D + L K N P+I+ NK+D Sbjct: 64 GDEPFMDQIKHQAEIAIDEADVIVFITSAREGVTDADELVARLLYKSNKPVILAVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + YE Y+L + IS H LG ++ K F ++ +I Sbjct: 124 PEMRADIYEFYTLGLGDPYPISGSHGLGIGDVLDEAVKHFTEEAEEEDESII-------- 175 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 + +++GRPNVGKS+LIN +LG R++ G TRD++ Sbjct: 176 ---------------------KFSLIGRPNVGKSSLINAILGEERVIVSDIEGTTRDAID 214 Query: 244 ISWNWKN-HPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + +N + DTAGMRK ++ ES E+ +V ++M+++ + +++L+A +Q Sbjct: 215 THFTSENGQEFTMIDTAGMRKKGKVYESTEKYSVMRAMRAIERSDVVLMVLNAEEGIREQ 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D RI G ++L +NKWD++ + N ++D + + I +S T + Sbjct: 275 DKRIAGYAHEAGRGIILVVNKWDLLKKETNTMRDFEAEIRDEFQYLDYAPIIFVSAATKQ 334 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 L+ L + E++ RI ++ LN + NP PT + ++ Y TQ+ PP+ Sbjct: 335 RLNQLPALIEEVSMNQNMRIPSALLNDVIMDAVAINPTPTDKGKRLKIFYATQVAVKPPT 394 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 F+IF + SY R+L N++R F+ G PIR+ Sbjct: 395 FVIFVNEEELMHFSYARFLENQIRKAFTFEGTPIRII 431 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/162 (29%), Positives = 79/162 (48%), Gaps = 22/162 (13%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAII-NGVIFNIVDTAGI 60 I +++G PNVGKS+L N ++ ++ +V + G TRD + NG F ++DTAG+ Sbjct: 174 IIKFSLIGRPNVGKSSLINAILGEERVIVSDIEGTTRDAIDTHFTSENGQEFTMIDTAGM 233 Query: 61 -ADGK------NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIP 113 GK S+ + M AI + ++L +++++ GI D I + + Sbjct: 234 RKKGKVYESTEKYSVMRAMR-----AIERSDVVLMVLNAEEGIREQDKRIAGYAHEAGRG 288 Query: 114 IIIVSNKMDTRIAQ----RNFY-----EIYSLDFKEIVEISA 146 II+V NK D + R+F E LD+ I+ +SA Sbjct: 289 IILVVNKWDLLKKETNTMRDFEAEIRDEFQYLDYAPIIFVSA 330 >gi|46447114|ref|YP_008479.1| hypothetical protein pc1480 [Candidatus Protochlamydia amoebophila UWE25] gi|81697623|sp|Q6MB45|DER_PARUW RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|46400755|emb|CAF24204.1| conserved hypothetical protein [Candidatus Protochlamydia amoebophila UWE25] Length = 487 Score = 247 bits (631), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 142/456 (31%), Positives = 240/456 (52%), Gaps = 38/456 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKS LFNR+ K+K+A+V GITRDRLY + + G+ F ++DT GI Sbjct: 7 LAIVGRPNVGKSALFNRICKQKIAIVDEAEGITRDRLYAEGELFGLHFQVIDTGGINARS 66 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +++ Q E+AI EA I+ ++D+ G+T D + L + P+ + NK+D Sbjct: 67 KEVFNEEIKRQAEIAIEEADTIVQVVDAHVGLTELDKEVARVLLRTKKPVCLAVNKIDNL 126 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 ++ +SL K+++ +SA +EL F E+ Sbjct: 127 SQTSLMHQFHSLGIKQMIPVSAAQGWQIAELLETAF---------------------EKI 165 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 +E + E SS+K +A+VGR NVGKS+L+N LL +R + G TRDSV I Sbjct: 166 SREIESQETFSSIK-------VAIVGRANVGKSSLVNYLLDEDRCIVSPIPGTTRDSVDI 218 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 S+ K+ + DTAG+R+ E +++ ++ +++ + +++LD QD Sbjct: 219 SFTHKDECYTLIDTAGIRRKRAEHEVVDKFAAIRTERAIERADLCVLMLDVQEGITAQDK 278 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSD--KLNLLQDLRTKA--IKNLPQIGDIYINTISGRT 360 +I +++ G ++ LNKWD+V + LQ+L + +++ P+I S +T Sbjct: 279 KIANTIEEAGQGCIILLNKWDLVQGFRMEHCLQNLEEEVPFLRHCPKI------FTSAKT 332 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G +D L + E+ + RITT LN ++ + +N PP I + R+ Y+ Q+ P Sbjct: 333 GRNIDKLFPLIQEVYANSQKRITTHQLNKFIGEALQKNHPPMIQGKRLRIYYMAQVAVKP 392 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 P F++F +PN + ++YK+YL N+ R ++ +G+PI Sbjct: 393 PKFILFVNYPNLMTDTYKKYLYNQFREAYAFTGVPI 428 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 38/141 (26%), Positives = 70/141 (49%), Gaps = 3/141 (2%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP 264 ++A+VGRPNVGKS L NR+ + GITRD + ++ DT G+ Sbjct: 6 KLAIVGRPNVGKSALFNRICKQKIAIVDEAEGITRDRLYAEGELFGLHFQVIDTGGIN-- 63 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +R E ++ +++ ++ +T + ++DA + + D + + T V LA+NK Sbjct: 64 ARSKEVFNEEIKRQAEIAIEEADTIVQVVDAHVGLTELDKEVARVLLRTKKPVCLAVNKI 123 Query: 325 DMVSDKLNLLQDLRTKAIKNL 345 D +S + +L+ + IK + Sbjct: 124 DNLS-QTSLMHQFHSLGIKQM 143 >gi|260655278|ref|ZP_05860766.1| ribosome-associated GTPase EngA [Jonquetella anthropi E3_33 E1] gi|260629726|gb|EEX47920.1| ribosome-associated GTPase EngA [Jonquetella anthropi E3_33 E1] Length = 440 Score = 247 bits (631), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 144/470 (30%), Positives = 244/470 (51%), Gaps = 42/470 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 ++IVG PNVGKS+LFNRLV + A+V + PG+TRDRL+G+ F +VDT G+ Sbjct: 4 VSIVGRPNVGKSSLFNRLVGSRRAIVDDQPGVTRDRLFGRVEWGDRSFYLVDTGGLLLRD 63 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + I + M Q + AI E+ +LF++D +G+T D + LRK + +I+V NK+D Sbjct: 64 DDPIMRSMRGQIQQAIEESDAVLFVVDGPSGVTWMDQDVADVLRKASSRVIVVINKLDDW 123 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 E YSL F +++ +SA HD G EL + + Sbjct: 124 KHDDLAMEAYSLGFDKVIGVSALHDRGIDELKEAVCAVL--------------------- 162 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P + E + +K IA+VGRPN GKS+++NRL G +R L +G TRD++ Sbjct: 163 PDRQLPPEAEEVIK-------IALVGRPNCGKSSILNRLAGEDRSLVSDVAGTTRDAIDW 215 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + I DTAG+R+ SR ++E + ++MQ+V C+ + ++DA+ P +QD Sbjct: 216 ETAQNSRTFRIVDTAGLRRKSRQKGNVEFYSSVRTMQAVDECDVAVFIMDASEPATEQDQ 275 Query: 305 RIVDSVFNTGHAVVLALNKWDMVS-----DKLNLLQDLRTKAIKNLPQIGDIYINTISGR 359 R+V + + G +VL +NKWD+++ D++ D + + P+ ++ + +SGR Sbjct: 276 RLVAEILDRGKGLVLVVNKWDLITGERPGDEMTKKLDEEFRFAADAPR---LFTSALSGR 332 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKT-QLQNPPPTIFNRYNRLKYITQIQS 418 + L DL V + + R +++ LN ++ + P R R+ Y TQ Sbjct: 333 GLQKLLDLAAGVYDRR---RARFSSALLNRIVRDMLAFERLPSDGKGRLLRIFYCTQSSD 389 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK--NP 466 PP+F+ F P + ++++ ++ ++R SG+P+R+ ++ K NP Sbjct: 390 VPPTFVFFVNDPKLVTQAFENHMRKKIRELEDFSGVPLRLFWRGRKKENP 439 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 37/129 (28%), Positives = 68/129 (52%), Gaps = 2/129 (1%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI- 60 + IA+VG PN GKS++ NRL + ++V + G TRD + + N F IVDTAG+ Sbjct: 174 VIKIALVGRPNCGKSSILNRLAGEDRSLVSDVAGTTRDAIDWETAQNSRTFRIVDTAGLR 233 Query: 61 -ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 + ++ + +T A++E + +F++D+ T D + + + + +++V N Sbjct: 234 RKSRQKGNVEFYSSVRTMQAVDECDVAVFIMDASEPATEQDQRLVAEILDRGKGLVLVVN 293 Query: 120 KMDTRIAQR 128 K D +R Sbjct: 294 KWDLITGER 302 >gi|229543990|ref|ZP_04433049.1| small GTP-binding protein [Bacillus coagulans 36D1] gi|229325129|gb|EEN90805.1| small GTP-binding protein [Bacillus coagulans 36D1] Length = 436 Score = 247 bits (630), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 141/461 (30%), Positives = 239/461 (51%), Gaps = 31/461 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST+FNR+V +++++V + PG+TRDR+Y A FN++DT GI G Sbjct: 6 VAIVGRPNVGKSTIFNRIVGERVSIVEDVPGVTRDRIYSPAEWLTHEFNVIDTGGIDIGD 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +Q+ Q E+AI EA +I+F+ + G+T D + L + P+++ NK+D Sbjct: 66 EPFL-EQIRQQAEIAIQEADVIIFITSGREGVTSADEMVAKILYRSKKPVVLAVNKVDNP 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + Y+ Y+L F + IS H LG +L + K F +K +E Sbjct: 125 EMRTQIYDFYALGFGDPFPISGAHGLGLGDLLDAVVKHFPEK--------------ADEE 170 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 E++ ++ +GRPNVGKS+L N +LG R++ G TRD+V Sbjct: 171 YGEDV--------------IKFCFIGRPNVGKSSLFNAILGEERVIVSDIEGTTRDAVDT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + +++ + DTAGMRK ++ E+ E+ +V ++++++ + V+L+ +QD Sbjct: 217 VYTYEDQTYVMIDTAGMRKKGKVYENTEKYSVLRALRAIERSDVVCVVLNGEEGIREQDK 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIY-INTISGRTGEG 363 RI G V++ +NKWD V + T+ I++ Q D + +S +T + Sbjct: 277 RIAGYAHEAGRGVIIVVNKWDAVQKDEKTMNQF-TQKIRDHFQFLDYAPVIYVSAKTKKR 335 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 LD L + +++ R+ +S LN + NP PT R ++ Y TQ+ PP+ Sbjct: 336 LDQLFPLLKTVSENHAMRVKSSVLNEVITDAVAMNPTPTDKGRRLKIFYATQVSVKPPTI 395 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 ++F P + SY+R+L NR+R F +G PI + ++ K Sbjct: 396 VVFVNDPELMHFSYERFLENRIRDAFGFTGTPIHIIARARK 436 >gi|237712743|ref|ZP_04543224.1| GTP-binding protein EngA [Bacteroides sp. D1] gi|262408120|ref|ZP_06084667.1| ribosome-associated GTPase EngA [Bacteroides sp. 2_1_22] gi|293369492|ref|ZP_06616071.1| ribosome-associated GTPase EngA [Bacteroides ovatus SD CMC 3f] gi|294644223|ref|ZP_06721993.1| ribosome-associated GTPase EngA [Bacteroides ovatus SD CC 2a] gi|294808599|ref|ZP_06767339.1| ribosome-associated GTPase EngA [Bacteroides xylanisolvens SD CC 1b] gi|298480163|ref|ZP_06998361.1| ribosome-associated GTPase EngA [Bacteroides sp. D22] gi|229447220|gb|EEO53011.1| GTP-binding protein EngA [Bacteroides sp. D1] gi|262353672|gb|EEZ02765.1| ribosome-associated GTPase EngA [Bacteroides sp. 2_1_22] gi|292635377|gb|EFF53890.1| ribosome-associated GTPase EngA [Bacteroides ovatus SD CMC 3f] gi|292640433|gb|EFF58681.1| ribosome-associated GTPase EngA [Bacteroides ovatus SD CC 2a] gi|294444198|gb|EFG12925.1| ribosome-associated GTPase EngA [Bacteroides xylanisolvens SD CC 1b] gi|295088054|emb|CBK69577.1| ribosome-associated GTPase EngA [Bacteroides xylanisolvens XB1A] gi|298273444|gb|EFI15007.1| ribosome-associated GTPase EngA [Bacteroides sp. D22] Length = 437 Score = 247 bits (630), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 152/454 (33%), Positives = 240/454 (52%), Gaps = 30/454 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNRL K + A+V G TRDR YG++ G F++VDT G Sbjct: 5 VAIVGRPNVGKSTLFNRLTKTRQAIVNEEAGTTRDRQYGKSEWLGREFSVVDTGGWVVNS 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +++ Q LA++EA +ILF++D G+T D + + LR+ N P+I+V+NK D Sbjct: 65 DDVFEEEIRKQVLLAVDEADVILFVVDVMNGVTDLDMQVAAILRRANSPVIMVANKTDNH 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 Q N E Y L + +SA GT +L +I FK K + E Sbjct: 125 DLQYNAPEFYKLGLGDPYCVSAMTGSGTGDLMDLIVSNFK--------------KESSEI 170 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 ++I R AVVGRPN GKS+++N +G R + +G TRDS+ Sbjct: 171 LDDDIP--------------RFAVVGRPNAGKSSIVNAFIGEERNIVTEIAGTTRDSIYT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 +N + DTAG+RK +++ E LE +V +S++++ + I++LDAT E QDL Sbjct: 217 RYNKFGFDFYLVDTAGIRKKNKVNEDLEYYSVIRSIRAIEGSDVCILMLDATRGVESQDL 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKN-LPQIGDIYINTISGRTGEG 363 I + +V+ +NKWD+V DK +Q +A+++ D I S T + Sbjct: 277 NIFSLIQKNQKGLVVVINKWDLVEDKSVKVQKTFEEAVRSRFAPFVDFPIIFASALTKQR 336 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP-PS 422 + ++ + + T+I T+ LN + PPP+ +Y ++KYITQ+ ++ PS Sbjct: 337 ILKVLEEARNVYENRTTKIPTARLNEEMLPLIEAYPPPSNKGKYIKIKYITQLPNTQVPS 396 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 F+ F P + + YKR+L N++R ++L+G P+ Sbjct: 397 FVYFANLPQYVKDPYKRFLENKMREKWNLTGTPV 430 >gi|253996245|ref|YP_003048309.1| GTP-binding protein EngA [Methylotenera mobilis JLW8] gi|253982924|gb|ACT47782.1| small GTP-binding protein [Methylotenera mobilis JLW8] Length = 484 Score = 247 bits (630), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 155/474 (32%), Positives = 244/474 (51%), Gaps = 34/474 (7%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI TI +VG PNVGKSTLFNRL K + A+V + PG+TRDR YG+ I + +VDT G Sbjct: 1 MIPTIVLVGRPNVGKSTLFNRLTKTRDALVADLPGLTRDRHYGRGIGASQPYLVVDTGGF 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + I K M QT AI+EA I+FL+D + G++P D I + LR+ P+++ NK Sbjct: 61 EPHTDSGILKAMAKQTLQAIDEADAIIFLVDGRQGVSPQDMEIANRLRRSKCPVLLAVNK 120 Query: 121 ---MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 M + +F+E L + IS+ H G ++ + +EN Sbjct: 121 TEGMQKAVVSADFHE---LGLGYPLSISSAHGEGVRDIVEL---------------ALEN 162 Query: 178 NKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGI 237 K E+ P + T + + ++A+VGRPNVGKSTL+N LLG R++ + G Sbjct: 163 FKEVEDEPVTDYTGD---------RIPKVAIVGRPNVGKSTLVNALLGEERVIAYDEPGT 213 Query: 238 TRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATI 297 TRDS+ I + DTAG+RK R+ E++E+ +V K++Q++ I+++DA Sbjct: 214 TRDSIHIDLEKNGKHYTLIDTAGVRKRGRVFEAIEKFSVIKTIQAIEEANVVILVVDAQE 273 Query: 298 PFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIY-INTI 356 +QD + + + G A+V+A+NKWD + + +D + I Q D + I Sbjct: 274 GITEQDAHVAAYILDAGRALVVAINKWDGLKED---ERDWIKREIDRKLQFLDFAEFHYI 330 Query: 357 SGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQI 416 S +GL +L SV K ++ T L L Q+ PP +L+Y Q Sbjct: 331 SALRKKGLPELFKSVDVAYKAAFAKLATPQLTRVLIDALQQHQPPISKGIRPKLRYAHQG 390 Query: 417 QSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 S+PP +I + + + ++Y R+L R F LSG P+R+ ++ NP+ ++ Sbjct: 391 GSNPPIVVIHGSHVDGVKDAYTRFLEKTFRRTFQLSGTPLRVEYKQGHNPFAEE 444 >gi|325265768|ref|ZP_08132455.1| ribosome-associated GTPase EngA [Kingella denitrificans ATCC 33394] gi|324982751|gb|EGC18376.1| ribosome-associated GTPase EngA [Kingella denitrificans ATCC 33394] Length = 489 Score = 247 bits (630), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 155/467 (33%), Positives = 230/467 (49%), Gaps = 30/467 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M TIA+VG PNVGKSTLFNRL + K A+V + PG+TRDR YG + + +VDT G Sbjct: 1 MKPTIALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVVDTGGF 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + I +M QT AI+EA ++FL+D++ G+TP D I LR+ P+ + NK Sbjct: 61 EPVVDSGILHEMARQTLQAIDEADAVIFLVDARTGLTPQDKIIADRLRQSPRPVYLAVNK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + E Y L E IS H G L E++EN Sbjct: 121 GEGGRRDVLAAEFYELALGEPHVISGAHGDGVYYLME---------------EVLENFPE 165 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 EE EN P+ AV+GRPNVGKSTL+N +LG R++ +G TRD Sbjct: 166 AEEEQPEN------------KHPV-FAVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRD 212 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ I + + P I DTAG+R+ ++ E++E+ +V K+MQ+V +++LDA Sbjct: 213 SIHIDFEREGKPFTIIDTAGVRRRGKVDEAVEKFSVIKAMQAVEAANVAVLVLDAQQDIA 272 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 QD I G A+V+A+NKWD +S++ D++ + L + + IS Sbjct: 273 DQDATIAGFALEAGRALVIAVNKWDGISEERR--NDIKRDIARKLYFLDFAKFHYISALK 330 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G+D L S+ ++ T + LQ + PP +++Y Q +P Sbjct: 331 ERGIDGLFDSIQAAYDAAFIKMPTPKITRVLQSAIERQAPPRAGLVRPKMRYAHQGGMNP 390 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 P +I + I +SY RYL R F+L G P+R+ + +NPY Sbjct: 391 PVIVIHGNSLSAISDSYTRYLTQTFRKAFNLQGTPLRIQYNVGENPY 437 >gi|209521123|ref|ZP_03269851.1| small GTP-binding protein [Burkholderia sp. H160] gi|209498433|gb|EDZ98560.1| small GTP-binding protein [Burkholderia sp. H160] Length = 445 Score = 247 bits (630), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 156/469 (33%), Positives = 239/469 (50%), Gaps = 32/469 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+ + +VDT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRAGERPYLVVDTGGFEPVA 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I +M QT A+ E+ +++F++D + G+ P D +I +LRK PI +V NK + Sbjct: 65 KDGILHEMARQTRQAVEESDVVVFIVDGRNGLAPQDKSIADYLRKVGRPIFLVVNKAEGM 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + Y L + ISA H G +++ I + + Y P Sbjct: 125 KYANVAADFYELGLGDPRAISAAHGDGVTDM---INEALEVAYAGQPE------------ 169 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 +S ++ ++IA+VGRPNVGKSTLIN L+G R++ G TRDS+ + Sbjct: 170 ---------ESEEDEEARGVKIAIVGRPNVGKSTLINALVGEERVIAFDMPGTTRDSIYV 220 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + P + DTAG+R+ ++ E++E+ +V K++QS+ I+LLDA QD Sbjct: 221 DFERNGKPYTLIDTAGLRRRGKVFEAIEKFSVVKTLQSISDANVVILLLDARQDISDQDA 280 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAI--KNLPQIGDIYINTISGRTGE 362 I V G A+V+ +NKWD + + RTKA + L + + IS Sbjct: 281 HIAGFVVEQGRALVVGVNKWDGLDPHVR----ERTKADLERKLKFLDFAKFHFISAAEKT 336 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLN-SWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 G+ LM SV + +++ T L + ++ + Q P R +L+Y Q +PP Sbjct: 337 GIGPLMRSVDDAYTAAMSKLPTPKLTRALIEAVEFQQPRRRGPVR-PKLRYAHQGGQNPP 395 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +I + I ++YKRYL NR R F L+G P+R+ F+SS NPY K Sbjct: 396 IIVIHGNALDAITDTYKRYLENRFRETFKLTGTPLRIEFRSSTNPYADK 444 >gi|262280930|ref|ZP_06058713.1| conserved hypothetical protein [Acinetobacter calcoaceticus RUH2202] gi|262257830|gb|EEY76565.1| conserved hypothetical protein [Acinetobacter calcoaceticus RUH2202] Length = 469 Score = 246 bits (629), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 146/467 (31%), Positives = 250/467 (53%), Gaps = 37/467 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA++G PNVGKSTLFN++ K + A+V + G+TRDR YG A F +VDT GI + Sbjct: 5 IALIGRPNVGKSTLFNQITKSRDALVADFAGLTRDRKYGDATYQNKSFIVVDTGGIGE-N 63 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I M +Q++ AINEA +I+F++D++AG+ D I LR + +V+NK+D Sbjct: 64 EGGIDNYMAEQSKTAINEADIIIFVVDARAGLLASDEQIARELRTLGKKVYLVANKVDGV 123 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 A+ E Y L E ++++A H G ++ LE + + +E+ Sbjct: 124 HAEAALVEFYKLGMGEPLQVAASHGRGVQQM----------------LEDVLVDVPEDEN 167 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P+E+ + G LR+A++GRPNVGKSTL+NRLLG +R++ Q G TRDS+ I Sbjct: 168 PEEHDKATG----------LRLAIIGRPNVGKSTLVNRLLGEDRVVAFDQPGTTRDSIYI 217 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + DTAG+R+ ++ E +E+ ++ K++Q+++ +V+LDA +QDL Sbjct: 218 PFERDGRQYTLIDTAGVRRKGKVDEMIEKFSIVKTLQAIKDAHVIVVVLDAREGVVEQDL 277 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIY----INTISGRT 360 ++ G A+V+A+NKWD N+ + R + ++ + D ++ IS Sbjct: 278 HLIGYALEAGRAMVIAINKWD------NMTEYDRKQCKLDVDRRFDFIPWAKVHLISALH 331 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G G+ ++ ++ +++ + L L + PP + + +++Y +P Sbjct: 332 GTGVGEMYPTIHRAYDSSHLKVSPAKLTQILNDATDAHQPPMVGGKRIKMRYAHMGGQNP 391 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 P+ +I +K P Y+RYL N R + L G P+R+ F++S+NP+ Sbjct: 392 PTIVIHGNKVDKTPADYRRYLENVFRKVYKLEGTPVRVDFKTSENPF 438 >gi|224535783|ref|ZP_03676322.1| hypothetical protein BACCELL_00647 [Bacteroides cellulosilyticus DSM 14838] gi|224522603|gb|EEF91708.1| hypothetical protein BACCELL_00647 [Bacteroides cellulosilyticus DSM 14838] Length = 437 Score = 246 bits (629), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 154/454 (33%), Positives = 236/454 (51%), Gaps = 30/454 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNRL K + A+V G TRDR YG++ G F++VDT G Sbjct: 5 VAIVGRPNVGKSTLFNRLTKTRQAIVNEEAGTTRDRQYGKSEWLGKEFSVVDTGGWVVNS 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +++ Q +A++EA +ILF++D G+T D + + LR+ P+++++NK D Sbjct: 65 DDIFEEEIRKQVLMAVDEADVILFVVDVMNGVTDLDMQVAAILRRTQKPVLLIANKTDNG 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 Q N E Y L + ISA GT ++ +I FK K +E Sbjct: 125 ELQYNAPEFYKLGLGDPYCISAMTGSGTGDMMDLIVGTFK--------------KEADEI 170 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 E+I R AVVGRPN GKS+++N +G +R + +G TRDS+ Sbjct: 171 LDEDIP--------------RFAVVGRPNAGKSSIVNAFIGEDRNIVTEIAGTTRDSIYT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 +N + DTAG+RK +++ E LE +V +S++S+ + I++LDAT E QDL Sbjct: 217 RYNKFGFDFYLVDTAGIRKKNKVNEDLEYYSVIRSIRSIENADVCILMLDATRGVESQDL 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKN-LPQIGDIYINTISGRTGEG 363 I + +V+ +NKWD+V DK + AI++ D I S T + Sbjct: 277 NIFSLIQKNAKGLVVVVNKWDLVQDKTVKVMKTFEDAIRSRFAPFVDFPIIFGSALTKQR 336 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP-PS 422 + ++ + TRI T+ LN + PPP +Y ++KYITQ+ ++ PS Sbjct: 337 ILKVLEEARIVYDNRMTRIPTARLNEEMLPLIEAYPPPATKGKYIKIKYITQLPNTQVPS 396 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 F+ F P + E YKR+L N++R +SL+G PI Sbjct: 397 FVYFANLPQYVKEPYKRFLENKMREKWSLTGTPI 430 >gi|283769536|ref|ZP_06342432.1| ribosome-associated GTPase EngA [Bulleidia extructa W1219] gi|283103804|gb|EFC05190.1| ribosome-associated GTPase EngA [Bulleidia extructa W1219] Length = 437 Score = 246 bits (629), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 141/455 (30%), Positives = 234/455 (51%), Gaps = 30/455 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 +AIVG PNVGKST+FNRLV ++M++V + PG+TRDRLYG A G F ++DT GI Sbjct: 5 VVAIVGRPNVGKSTIFNRLVGERMSIVEDIPGVTRDRLYGSAEWAGNSFRVIDTGGIQLA 64 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 N ++ Q ++A+ EA +IL + D + G+ D I L+K P+++ N++D Sbjct: 65 -NQPFQTEIRAQVDIAMEEADVILMVCDGQMGVMEDDRFIAGLLQKNKKPVVLAVNRIDD 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + N YE Y L + + S H +G ++ F++ Sbjct: 124 QSRMVNIYEFYELGLGDPMACSGIHGVGVGDVLDRCFELM-------------------- 163 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 PK E +K +++AV+G PNVGKS+L+N +L R + + G TRD++ Sbjct: 164 -PKRMDIPE--------TKGVKMAVIGEPNVGKSSLVNAILNEERAIVSNIQGTTRDAID 214 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + + P I DTAG+RK +I ES+E+ +V ++M+++ C+ + ++D +QD Sbjct: 215 TPFTHEGKPYIIVDTAGIRKRGKIYESIEKYSVLRAMRAIERCDVVLFVMDGEAGIREQD 274 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 + +++ +NKWD+V + + K + + I +S +T + Sbjct: 275 KHVAGYAVEMNKPIIIVVNKWDIVEKDDRTMNEFTQKVRDHFLYLSYAPIVFVSAKTHQR 334 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 ++ ++ V I + K RI T+ LN + Q+ P PT + R+ Y TQ+ PP+F Sbjct: 335 VNRILPIVDMILENAKRRIPTNVLNEVVGDAQITTPSPTHNGKRFRIYYATQVGIQPPTF 394 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 ++ C P + SY+R+L N LR F L G PIR+ Sbjct: 395 MLSCNDPKLLHFSYERFLENTLRNAFPLEGTPIRI 429 Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 38/134 (28%), Positives = 69/134 (51%), Gaps = 3/134 (2%) Query: 202 KPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGM 261 K + +A+VGRPNVGKST+ NRL+G + G+TRD + S W + + DT G+ Sbjct: 2 KEMVVAIVGRPNVGKSTIFNRLVGERMSIVEDIPGVTRDRLYGSAEWAGNSFRVIDTGGI 61 Query: 262 RKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLAL 321 + ++ ++ + V +M+ + +++ D + + D I + VVLA+ Sbjct: 62 QLANQPFQTEIRAQVDIAMEE---ADVILMVCDGQMGVMEDDRFIAGLLQKNKKPVVLAV 118 Query: 322 NKWDMVSDKLNLLQ 335 N+ D S +N+ + Sbjct: 119 NRIDDQSRMVNIYE 132 >gi|299144092|ref|ZP_07037172.1| ribosome-associated GTPase EngA [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518577|gb|EFI42316.1| ribosome-associated GTPase EngA [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 439 Score = 246 bits (629), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 140/458 (30%), Positives = 237/458 (51%), Gaps = 29/458 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 ++I+G PNVGKSTLFN++V KK+++ + PG+TRDR+Y A F +VDT G+ Sbjct: 6 VSIIGTPNVGKSTLFNKIVGKKISITEDTPGVTRDRIYSDATWLNKQFLLVDTGGLDLKD 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + Q +LA++ + +I+FL D G++ D I+++LRK N II+ NK D++ Sbjct: 66 EDIFMSSIKAQVDLALDMSDVIIFLTDGIKGVSSNDLEISNYLRKSNKKIILAVNKFDSK 125 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 A+ N+Y+ + L + IS+E G +L Sbjct: 126 DAKNNYYDFFELGLGTPITISSEQGSGVGDLLD--------------------------- 158 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 E I +R+ +G+PNVGKS+LINR+LG R++ G TRD++ Sbjct: 159 --EVIVDFKDQEDDFFDDDIRVTFIGKPNVGKSSLINRILGEERVIVTDIPGTTRDAIDS 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 +N+ DTAG+RK +I E++E+ +V +++ ++ ++++DA +QD Sbjct: 217 KFNFNGENYVFVDTAGLRKKKKIYENIERYSVIRTLTAIERASVCVLVIDAYEGVSEQDS 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 +IV + A+++A+NKWD++ + ++ + K LP I I IS +TG+ + Sbjct: 277 KIVGYAHDNNKAIIVAVNKWDLIEKDNSTMKKFESDIRKRLPFINYAPILFISAQTGQRV 336 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 D L+ + +N + RI T LN L + L N PP+ + +L Y +Q+ PP FL Sbjct: 337 DKLLEMISLVNNNYNHRIKTGVLNDILNRAVLMNQPPSDKGKRGKLYYGSQVSVRPPKFL 396 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 I + SY RYL N++R +S G+P+ + ++ Sbjct: 397 ISVNDKDLFHFSYVRYLENQIRDAYSFDGVPLVLLLKN 434 >gi|256851011|ref|ZP_05556400.1| ribosome-associated GTPase EngA [Lactobacillus jensenii 27-2-CHN] gi|260661223|ref|ZP_05862137.1| ribosome-associated GTPase EngA [Lactobacillus jensenii 115-3-CHN] gi|282932036|ref|ZP_06337494.1| ribosome-associated GTPase EngA [Lactobacillus jensenii 208-1] gi|256616073|gb|EEU21261.1| ribosome-associated GTPase EngA [Lactobacillus jensenii 27-2-CHN] gi|260548160|gb|EEX24136.1| ribosome-associated GTPase EngA [Lactobacillus jensenii 115-3-CHN] gi|281303803|gb|EFA95947.1| ribosome-associated GTPase EngA [Lactobacillus jensenii 208-1] Length = 436 Score = 246 bits (629), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 145/463 (31%), Positives = 246/463 (53%), Gaps = 33/463 (7%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AIVG PNVGKSTLFNR++ +++A+V + PG+TRDR Y +A G FNI+DT GI Sbjct: 5 TVAIVGQPNVGKSTLFNRIINERLAIVEDRPGVTRDRNYAKASWLGHEFNIIDTGGIT-W 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + I ++ Q ++A+ EA +I+ + +T D I L + + P+I+ NK D Sbjct: 64 EGGRIEDEIRAQADIAMEEADVIVMITSVALHLTDLDERIARILYRSSKPVILAVNKADN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + Y+ YSL + + IS+ H G +L + + F E + ++E+ Sbjct: 124 PEQRADIYDFYSLGLGDPIPISSTHGTGIGDLLDAVVENFPP----------EADTKDED 173 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 + +V+GRPNVGKS++IN +LG R++ ++ G TRD+V Sbjct: 174 E-------------------IAFSVIGRPNVGKSSIINAMLGQKRVIVANEEGTTRDAVD 214 Query: 244 ISWNWKNH-PIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + ++ + DTAG+R+ ++ E E+ +V ++ +++ + ++LDA+ +Q Sbjct: 215 TPFVAEDGTKFRMIDTAGIRRRGKVYEKTEKYSVLRAQAAIQRSDVVCLVLDASTGIREQ 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIY-INTISGRTG 361 D + + G +++ +NKWD+ N +D T+ I+ Q D I +S +TG Sbjct: 275 DKHVAGFAHDAGRGMIIVVNKWDLPKKDSNSAKDF-TRVIREEFQYLDYAPIIFVSAKTG 333 Query: 362 EGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 + LD L + E+ + RI +S LN L + P P I + R+ Y+TQ+ PP Sbjct: 334 KNLDQLPDLIKEVAENQSQRIQSSVLNDMLIEASKLVPSPLIKGKRLRVYYMTQVAVQPP 393 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 +F++F P + SYKR+LIN+LR NF +G PI++ + K Sbjct: 394 TFVVFVNDPELMHFSYKRFLINQLRDNFDFTGTPIKILPRKRK 436 >gi|161349970|ref|YP_045311.2| GTP-binding protein EngA [Acinetobacter sp. ADP1] Length = 469 Score = 246 bits (629), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 150/467 (32%), Positives = 254/467 (54%), Gaps = 37/467 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA++G PNVGKSTLFN++ K + A+V + G+TRDR YG A+ F +VDT GI +G+ Sbjct: 5 IALIGRPNVGKSTLFNQITKSRDALVADFAGLTRDRKYGDAVYQNKSFIVVDTGGIGEGE 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 A M +Q++ AI+EA +I+F++D++AG+ D I +R + +V+NK+D Sbjct: 65 AGIDA-YMAEQSKTAIHEADIIIFVVDARAGLLASDEQIAREIRSLGKKVYLVANKVDGV 123 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 A+ E Y L F E + ++A H G +++ LE + + +E+ Sbjct: 124 HAEAAVVEFYKLGFGEPLHVAASHGRGVAQM----------------LEDVLVDVPEDEN 167 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P+++ + G LR+A++GRPNVGKSTL+NRLLG R++ Q G TRDS+ I Sbjct: 168 PEDHDKATG----------LRLAIIGRPNVGKSTLVNRLLGEERVVAFDQPGTTRDSIYI 217 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + DTAG+R+ ++ E +E+ +V K++Q+++ +V++DA +QDL Sbjct: 218 PFERDGRQYTLIDTAGVRRKGKVDEMIEKFSVVKTLQAMKDAHVVVVVVDAREGIVEQDL 277 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIY----INTISGRT 360 ++ G A+V+A+NKWD N+ + R + ++ + D I+ IS Sbjct: 278 HLIGYALEAGRAMVIAINKWD------NMTEYDRKQCKLDVERRFDFIPWAKIHLISALH 331 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G G+ +L S+ + +++ + L L + PP I R +++Y +P Sbjct: 332 GTGVGELYPSIHRAYESANLKVSPAKLTQILNDATEAHQPPMISGRRIKMRYAHMGGQNP 391 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 P+ +I +K P Y+RYL N R + L G P+R+ F++S+NP+ Sbjct: 392 PTIVIHGNKVDKTPADYRRYLENVFRKVYKLEGTPVRIDFKTSENPF 438 >gi|304382194|ref|ZP_07364702.1| ribosome-associated GTPase EngA [Prevotella marshii DSM 16973] gi|304336659|gb|EFM02887.1| ribosome-associated GTPase EngA [Prevotella marshii DSM 16973] Length = 437 Score = 246 bits (629), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 151/460 (32%), Positives = 240/460 (52%), Gaps = 30/460 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +AIVG PNVGKSTLFNRL K + A+V + G TRDR YG+ NG F++VDT G Sbjct: 1 MANLVAIVGRPNVGKSTLFNRLTKSRRAIVSDEAGTTRDRQYGKCEWNGREFSVVDTGGW 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + + Q +A EA L+LFL+D G+T +D + LR+ +P+I+V+NK Sbjct: 61 VVNSDDIFEDAIRKQVIVATEEADLVLFLVDITNGLTDWDEDVAKILRRAKLPVILVANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 D+ + E Y L + ISA GT +L + QK P E N Sbjct: 121 ADSNEQIYDAAEFYRLGLGDPYCISAATGSGTGDLLDFVL----QKMPAS-----ETNDI 171 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 + P R AVVGRPN GKS++IN +G +R + +G TRD Sbjct: 172 EDGIP-------------------RFAVVGRPNAGKSSIINAFIGEDRNIVTEIAGTTRD 212 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ ++ + DTAG+R+ +++TE LE +V +S++++ + I++LDAT E Sbjct: 213 SIYTRYDKFGFDFYLVDTAGIRRKNKVTEDLEFYSVMRSIRAIENSDVCILMLDATRGIE 272 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDK-LNLLQDLRTKAIKNLPQIGDIYINTISGR 359 QD+ I + ++V+ +NKWD+V +K +++ + + D I S Sbjct: 273 AQDMNIFQLIQKNSKSLVVVVNKWDLVENKDTKVIKTFENAIRERMAPFTDFPIIFASAL 332 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 T + + ++ + ++ K R+ TS LN + PPP+I +Y ++KY TQ+ ++ Sbjct: 333 TKQRIFKVLETAKQVYLNRKARVGTSKLNEVMLPLIEAFPPPSIKGKYIKIKYCTQLPNT 392 Query: 420 P-PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 PSF+ + P I E+Y+R+L N++R N+S+ G PI + Sbjct: 393 QIPSFVFYANLPQYIRENYRRFLENKIRENWSMHGCPIHV 432 >gi|146328838|ref|YP_001209431.1| GTP-binding family protein [Dichelobacter nodosus VCS1703A] gi|146232308|gb|ABQ13286.1| GTP-binding family protein [Dichelobacter nodosus VCS1703A] Length = 449 Score = 246 bits (629), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 143/470 (30%), Positives = 249/470 (52%), Gaps = 33/470 (7%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + T+A+VG PNVGKSTLFN L + + A+V N G+TRDR+Y + + GV ++DT G+ Sbjct: 5 LATVALVGRPNVGKSTLFNTLTRSRQAIVSNKAGLTRDRIYARTTLAGVPCMLIDTGGML 64 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 + + I ++++Q A+ EA +I+F++D++ G+T D I + LR+ PI++ NK+ Sbjct: 65 NTETAEIDFRVDEQARTAMEEADVIVFVLDARDGLTLDDEQIAAELRRVTKPIVLAVNKI 124 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D + Y L + ++ I+AE G +L +I + P P+E N Sbjct: 125 DGVDPDVAVADFYRLGMQPVLTIAAEQRRGIKQLEDLIVSLL----PPAPIE-----NAN 175 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 E + +E+I +AV+GRPN GKSTL+NRLLG RL+ +G TRD+ Sbjct: 176 ETAAQESI---------------HLAVLGRPNAGKSTLLNRLLGEERLVASPVAGTTRDA 220 Query: 242 VSISW-NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 + I + + + + DTAG+R+ +R+ + +E+ ++ K+++++ I++LDA Sbjct: 221 IRIPYVDNEGDAFTLIDTAGIRRKARVDDKIEKFSIVKALEAIEQANVVILVLDAQAGIT 280 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 QD ++ + G +V+A+NKWD + + + ++ + + L + I IS Sbjct: 281 DQDAHLLGEIIKRGRGLVIAVNKWDHLDGETR--EKIQAQLERKLNFVDYAEIFYISALH 338 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQL---QNPPPTIFNRYNRLKYITQIQ 417 G + L+ +V + + I+T N W Q +L ++ PP + R +L+Y Q Sbjct: 339 GSNIRALLPAVKTVYRSVMMEIST---NQWTQALELAYHRHQPPLVNGRAIKLQYAHQGG 395 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 +PP +I + +P SY +YL R F L G PIR+ ++ NP+ Sbjct: 396 KNPPHVIIHGARTDNVPASYTQYLSRFFRQYFHLHGTPIRISYRDKANPF 445 >gi|313673994|ref|YP_004052105.1| ribosome-associated gtpase enga [Calditerrivibrio nitroreducens DSM 19672] gi|312940750|gb|ADR19942.1| ribosome-associated GTPase EngA [Calditerrivibrio nitroreducens DSM 19672] Length = 440 Score = 246 bits (629), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 151/467 (32%), Positives = 248/467 (53%), Gaps = 40/467 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + I+G PNVGKSTLFNR+ +++A+ + PG+TRD L G F ++DT G D K Sbjct: 4 VGILGRPNVGKSTLFNRIAGRRIAITDDMPGVTRDMLETICHWEGKNFLLIDTPGF-DLK 62 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + I K+M+ Q A+ E L++ ++D K G+ P D + S +R++NIP I+V NK+D+ Sbjct: 63 DDIIKKEMHKQFFSALEEVDLVILMLDGKEGLHPLDEIVVSMMRERNIPFILVINKIDSD 122 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + N E Y L +I+ ISA H L I K++ P IEN + Sbjct: 123 ERELNVAEFYKLGIDDILSISANHGRNVDILLDRIVSHIKEE----PENFIENER----- 173 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 L+I V+GRPN+GKS+LIN L R++ G TRD+V Sbjct: 174 -------------------LKIVVIGRPNMGKSSLINAWLNEERVIVTPIPGTTRDAVDS 214 Query: 245 SWNWKNHPIEIFDTAGMRKPS-RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + + + DTAG+RK S + +E+ ++ S+ + + L+DAT ++D Sbjct: 215 YFEYNGEKYILIDTAGIRKKSVMFKDRIEKYGYYRAYDSIERSDVVVALIDATEGVTEKD 274 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLN----LLQDLRTKAIKNLPQIGDIYINTISGR 359 ++IV + G V++A+NKWD++ +K L+ D+ K K + + I+I+ + + Sbjct: 275 VKIVADAYELGKPVIIAINKWDLLENKAETQKRLVSDVEDK-FKFIYKPKYIFISAATKK 333 Query: 360 TGEGLDDLMVSVL-EINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 + ++ + E NK R+ TS LN L+ Q+++ PP I NR + Y+TQ+ Sbjct: 334 NIFKIFNIAKQLFDETNK----RVPTSKLNEILEIAQVKHQPPMIKNRRLKFYYMTQVGV 389 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 +PP F++F +P+ + SY+R+L N +R F GIP++M F+ K+ Sbjct: 390 NPPEFVVFVNYPDAVHFSYQRFLFNMVREYFGFEGIPMKMHFRGKKD 436 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 36/132 (27%), Positives = 64/132 (48%), Gaps = 3/132 (2%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 L++ ++GRPNVGKSTL NR+ G +T G+TRD + +W+ + DT G Sbjct: 2 LKVGILGRPNVGKSTLFNRIAGRRIAITDDMPGVTRDMLETICHWEGKNFLLIDTPGFDL 61 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 I ++++ K+ ++ + I++LD D +V + +L +NK Sbjct: 62 KDDI---IKKEMHKQFFSALEEVDLVILMLDGKEGLHPLDEIVVSMMRERNIPFILVINK 118 Query: 324 WDMVSDKLNLLQ 335 D +LN+ + Sbjct: 119 IDSDERELNVAE 130 >gi|255693537|ref|ZP_05417212.1| ribosome-associated GTPase EngA [Bacteroides finegoldii DSM 17565] gi|260620675|gb|EEX43546.1| ribosome-associated GTPase EngA [Bacteroides finegoldii DSM 17565] Length = 437 Score = 246 bits (629), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 154/454 (33%), Positives = 238/454 (52%), Gaps = 30/454 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNRL K + A+V G TRDR YG++ G F++VDT G Sbjct: 5 VAIVGRPNVGKSTLFNRLTKTRQAIVNEAAGTTRDRQYGKSEWLGREFSVVDTGGWVVNS 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +++ Q LA+ EA +ILF++D G+T D + + LR+ P+I+V+NK D Sbjct: 65 DDIFEEEIRKQVLLAVEEADVILFVVDVMNGVTDLDMQVAAILRRAKSPVIMVANKTDNH 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 Q N E Y L + +SA GT +L +I FK K E Sbjct: 125 ELQYNAPEFYKLGLGDPYCVSAITGSGTGDLMDLIVSKFK--------------KETSEI 170 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 ++I R AVVGRPN GKS+++N +G +R + +G TRDS+ Sbjct: 171 LDDDIP--------------RFAVVGRPNAGKSSIVNAFIGEDRNIVTEIAGTTRDSIYT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 +N + DTAG+RK S++ E LE +V +S++++ + I++LDAT E QDL Sbjct: 217 RYNKFGFDFYLVDTAGIRKKSKVNEDLEYYSVIRSIRAIEGSDVCILMLDATRGIESQDL 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKN-LPQIGDIYINTISGRTGEG 363 I + +V+ +NKWD+V DK +Q +A+++ D I S T + Sbjct: 277 NIFSLIQKNQKGLVVVINKWDLVEDKSVKVQKTFEEAVRSRFAPFVDFPIIFASALTKQR 336 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP-PS 422 + ++ + + T+I T+ LN + PPP+ +Y ++KYITQ+ ++ PS Sbjct: 337 ILKVLEEARNVYENRTTKIPTARLNEEMLPLIEAYPPPSNKGKYIKIKYITQLPNTQVPS 396 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 F+ F P + E YKR+L N++R ++L+G PI Sbjct: 397 FVYFANLPQYVKEPYKRFLENKMREKWNLTGTPI 430 >gi|126700246|ref|YP_001089143.1| GTP-binding protein EngA [Clostridium difficile 630] gi|254976225|ref|ZP_05272697.1| GTP-binding protein EngA [Clostridium difficile QCD-66c26] gi|255093612|ref|ZP_05323090.1| GTP-binding protein EngA [Clostridium difficile CIP 107932] gi|255101800|ref|ZP_05330777.1| GTP-binding protein EngA [Clostridium difficile QCD-63q42] gi|255307668|ref|ZP_05351839.1| GTP-binding protein EngA [Clostridium difficile ATCC 43255] gi|255315360|ref|ZP_05356943.1| GTP-binding protein EngA [Clostridium difficile QCD-76w55] gi|255518025|ref|ZP_05385701.1| GTP-binding protein EngA [Clostridium difficile QCD-97b34] gi|255651141|ref|ZP_05398043.1| GTP-binding protein EngA [Clostridium difficile QCD-37x79] gi|260684207|ref|YP_003215492.1| GTP-binding protein EngA [Clostridium difficile CD196] gi|260687866|ref|YP_003219000.1| GTP-binding protein EngA [Clostridium difficile R20291] gi|306520992|ref|ZP_07407339.1| GTP-binding protein EngA [Clostridium difficile QCD-32g58] gi|115251683|emb|CAJ69518.1| putative GTP-binding protein EngA [Clostridium difficile] gi|260210370|emb|CBA64741.1| putative GTP-binding protein [Clostridium difficile CD196] gi|260213883|emb|CBE05907.1| putative GTP-binding protein [Clostridium difficile R20291] Length = 441 Score = 246 bits (629), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 141/458 (30%), Positives = 241/458 (52%), Gaps = 30/458 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKST+FN+ K++++V N PG+TRDR++ + F +VDT GI Sbjct: 8 VAVVGRPNVGKSTIFNKFAGKRISIVENTPGVTRDRIFAEVEWLDKYFTLVDTGGIEPDS 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I QM +Q LA++ +H+ILF++D KAGIT D I LRK P+I+V NK+D++ Sbjct: 68 EDIILSQMRNQAMLAMDMSHVILFIVDGKAGITAADKEIAQLLRKTKKPVILVVNKIDSQ 127 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 N Y+ Y L F +S + +G +L E++EN ++ Sbjct: 128 SQFDNIYDFYELGFGTPFAVSGANSMGFGDLLD---------------EIVENFPAGLDT 172 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 E +R+A+ G+PN GKS+++N++LG R++ +G TRD++ Sbjct: 173 EYE-------------EDIIRVAITGKPNAGKSSILNKILGEERVIVSPIAGTTRDAIDT 219 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + DTAG+R+ S+I E++E+ +V ++M +V + ++++DA +QD Sbjct: 220 YFEKNGQKFLLIDTAGLRRKSKIYETIEKYSVIRAMSAVDRADVVLIVIDALEGVTEQDT 279 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKN-LPQIGDIYINTISGRTGEG 363 ++ + G + +NKWD++ +K N TK IK P + I +S +T + Sbjct: 280 KVAGIAHDEGKGCIFVINKWDLI-EKDNKTMSNYTKDIKEKFPFMMYAPIVFVSAKTNQR 338 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 ++ ++ +V ++ RI+TS LN + + + N PP+ R ++ Y TQ PP Sbjct: 339 MNKILDTVEYVSNEHSKRISTSALNEVIGEAVMLNQPPSDKGRRLKIYYGTQTDIRPPKI 398 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 +F + SY+RYL N++R NF G I+ ++ Sbjct: 399 TLFINDKDLTHFSYQRYLENKIRENFGFEGTSIKFEYR 436 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 41/141 (29%), Positives = 66/141 (46%), Gaps = 2/141 (1%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 I +AI G PN GKS++ N+++ ++ +V G TRD + NG F ++DTAG+ Sbjct: 178 IIRVAITGKPNAGKSSILNKILGEERVIVSPIAGTTRDAIDTYFEKNGQKFLLIDTAGLR 237 Query: 62 DGKNC--SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 +I K + A++ A ++L +ID+ G+T D + + I V N Sbjct: 238 RKSKIYETIEKYSVIRAMSAVDRADVVLIVIDALEGVTEQDTKVAGIAHDEGKGCIFVIN 297 Query: 120 KMDTRIAQRNFYEIYSLDFKE 140 K D Y+ D KE Sbjct: 298 KWDLIEKDNKTMSNYTKDIKE 318 >gi|262374928|ref|ZP_06068162.1| ribosome-associated GTPase EngA [Acinetobacter lwoffii SH145] gi|262309941|gb|EEY91070.1| ribosome-associated GTPase EngA [Acinetobacter lwoffii SH145] Length = 469 Score = 246 bits (629), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 147/467 (31%), Positives = 250/467 (53%), Gaps = 37/467 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA++G PNVGKSTLFN++ K + A+V + G+TRDR YG A F +VDT GI + Sbjct: 5 IALIGRPNVGKSTLFNQITKSRDALVADFAGLTRDRKYGDATYQNKSFIVVDTGGIGE-N 63 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I M +Q++ AI+EA +I+F++D++AG+ D I LR + +V+NK+D Sbjct: 64 EGGIDSYMAEQSKTAIHEADIIIFVVDARAGLLASDEQIARELRTLGKKVFLVANKVDGV 123 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 A+ E Y L E ++++A H G ++ LE + + +E+ Sbjct: 124 HAEAALVEFYKLGMGEPLQVAASHGRGVQQM----------------LEDVLADVPEDEN 167 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P+E+ + G LR+A++GRPNVGKSTL+NRLLG R++ Q G TRDS+ I Sbjct: 168 PEEHDKNTG----------LRLAIIGRPNVGKSTLVNRLLGEERVVAFDQPGTTRDSIYI 217 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + DTAG+R+ ++ E +E+ ++ K++Q+++ +V++DA +QDL Sbjct: 218 PFERDGRQYTLIDTAGVRRKGKVDEMIEKFSIVKTLQAMKDANVIVVVVDARDGIVEQDL 277 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIY----INTISGRT 360 ++ G A+V+A+NKWD N+ + R + ++ + D ++ IS Sbjct: 278 HLIGYALEAGRAMVIAVNKWD------NMTEYDRKQCKLDVERRFDFIPWAKVHLISALH 331 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G G+ DL S+ + +++ + + L + PP + R +++Y +P Sbjct: 332 GTGVGDLYPSIHRAYDSSRLKVSPAKITQILNDATDAHQPPMVQGRRIKMRYAHMGGQNP 391 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 P+ +I +K P Y+RYL N R + L G PI++ F++S+NP+ Sbjct: 392 PTIVIHGNKVDKTPADYRRYLENVFRKVYKLEGTPIKIEFKTSENPF 438 >gi|49529777|emb|CAG67489.1| putative GTP-binding protein EngA [Acinetobacter sp. ADP1] Length = 478 Score = 246 bits (629), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 150/467 (32%), Positives = 254/467 (54%), Gaps = 37/467 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA++G PNVGKSTLFN++ K + A+V + G+TRDR YG A+ F +VDT GI +G+ Sbjct: 14 IALIGRPNVGKSTLFNQITKSRDALVADFAGLTRDRKYGDAVYQNKSFIVVDTGGIGEGE 73 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 A M +Q++ AI+EA +I+F++D++AG+ D I +R + +V+NK+D Sbjct: 74 AGIDA-YMAEQSKTAIHEADIIIFVVDARAGLLASDEQIAREIRSLGKKVYLVANKVDGV 132 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 A+ E Y L F E + ++A H G +++ LE + + +E+ Sbjct: 133 HAEAAVVEFYKLGFGEPLHVAASHGRGVAQM----------------LEDVLVDVPEDEN 176 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P+++ + G LR+A++GRPNVGKSTL+NRLLG R++ Q G TRDS+ I Sbjct: 177 PEDHDKATG----------LRLAIIGRPNVGKSTLVNRLLGEERVVAFDQPGTTRDSIYI 226 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + DTAG+R+ ++ E +E+ +V K++Q+++ +V++DA +QDL Sbjct: 227 PFERDGRQYTLIDTAGVRRKGKVDEMIEKFSVVKTLQAMKDAHVVVVVVDAREGIVEQDL 286 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIY----INTISGRT 360 ++ G A+V+A+NKWD N+ + R + ++ + D I+ IS Sbjct: 287 HLIGYALEAGRAMVIAINKWD------NMTEYDRKQCKLDVERRFDFIPWAKIHLISALH 340 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G G+ +L S+ + +++ + L L + PP I R +++Y +P Sbjct: 341 GTGVGELYPSIHRAYESANLKVSPAKLTQILNDATEAHQPPMISGRRIKMRYAHMGGQNP 400 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 P+ +I +K P Y+RYL N R + L G P+R+ F++S+NP+ Sbjct: 401 PTIVIHGNKVDKTPADYRRYLENVFRKVYKLEGTPVRIDFKTSENPF 447 >gi|300173424|ref|YP_003772590.1| GTP-binding protein EngA [Leuconostoc gasicomitatum LMG 18811] gi|299887803|emb|CBL91771.1| GTP-binding protein EngA [Leuconostoc gasicomitatum LMG 18811] Length = 437 Score = 246 bits (629), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 139/461 (30%), Positives = 242/461 (52%), Gaps = 30/461 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST+FNR+ +++A+V + PG+TRDRLY A F ++DT GI G Sbjct: 6 VAIVGRPNVGKSTIFNRMAGERIAIVEDQPGVTRDRLYAPAEWLNYEFRMIDTGGIELGD 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +A ++ Q ELAI+EA +I+ + + G+T D + L K + P+++ NK+D Sbjct: 66 APFLA-EIRAQVELAIDEADVIVMITSGREGVTSADEVVAKMLYKTDKPVVLAINKVDNP 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 +++ Y+ YSL + +S H LG +L + K F Sbjct: 125 EMRQDIYDFYSLGLGDPFPVSGSHGLGLGDLLDEVVKHF--------------------- 163 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P E E + ++K +++GRPNVGKS+++N +LG +R++ S G TRD++ Sbjct: 164 PDEAAEQEDEGAIK-------FSIIGRPNVGKSSIVNAMLGEDRVIVSSIEGTTRDAIDS 216 Query: 245 SW-NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + + + DTAGMRK ++ E+ E+ +V ++++++ ++++DA +QD Sbjct: 217 RFVTPEGDEFIMVDTAGMRKRGKVYENTEKYSVMRALKAIDNSNVILMVIDAEAGIREQD 276 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 + G A+++ +NKWD V + +++ + I +S +TG+ Sbjct: 277 KHVAGFAHEAGRAMIIVVNKWDAVEKDDHTMKEFEDLIRSEFKFLDYAPITFVSAKTGQR 336 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 LD L V +++ + RI++S LN + NP P+ R R+ Y TQ+ PP+F Sbjct: 337 LDRLPQLVKDVDNNHRKRISSSTLNDVIMDAIAINPTPSDNGRRLRVYYATQVAIQPPTF 396 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 +IF + SY+R+L N++R F +G PI++ ++ K Sbjct: 397 VIFVNDVELMHFSYERFLENKIREAFDFTGTPIKLIVRARK 437 >gi|297205894|ref|ZP_06923289.1| ribosome-associated GTPase EngA [Lactobacillus jensenii JV-V16] gi|297149020|gb|EFH29318.1| ribosome-associated GTPase EngA [Lactobacillus jensenii JV-V16] Length = 439 Score = 246 bits (629), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 145/463 (31%), Positives = 246/463 (53%), Gaps = 33/463 (7%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AIVG PNVGKSTLFNR++ +++A+V + PG+TRDR Y +A G FNI+DT GI Sbjct: 8 TVAIVGQPNVGKSTLFNRIINERLAIVEDRPGVTRDRNYAKASWLGHEFNIIDTGGIT-W 66 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + I ++ Q ++A+ EA +I+ + +T D I L + + P+I+ NK D Sbjct: 67 EGGRIEDEIRAQADIAMEEADVIVMITSVALHLTDLDERIARILYRSSKPVILAVNKADN 126 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + Y+ YSL + + IS+ H G +L + + F E + ++E+ Sbjct: 127 PEQRADIYDFYSLGLGDPIPISSTHGTGIGDLLDAVVENFPP----------EADTKDED 176 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 + +V+GRPNVGKS++IN +LG R++ ++ G TRD+V Sbjct: 177 E-------------------IAFSVIGRPNVGKSSIINAMLGQKRVIVANEEGTTRDAVD 217 Query: 244 ISWNWKNH-PIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + ++ + DTAG+R+ ++ E E+ +V ++ +++ + ++LDA+ +Q Sbjct: 218 TPFVAEDGTKFRMIDTAGIRRRGKVYEKTEKYSVLRAQAAIQRSDVVCLVLDASTGIREQ 277 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIY-INTISGRTG 361 D + + G +++ +NKWD+ N +D T+ I+ Q D I +S +TG Sbjct: 278 DKHVAGFAHDAGRGMIIVVNKWDLPKKDSNSAKDF-TRVIREEFQYLDYAPIIFVSAKTG 336 Query: 362 EGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 + LD L + E+ + RI +S LN L + P P I + R+ Y+TQ+ PP Sbjct: 337 KNLDQLPDLIKEVAENQSQRIQSSVLNDMLIEASKLVPSPLIKGKRLRVYYMTQVAVQPP 396 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 +F++F P + SYKR+LIN+LR NF +G PI++ + K Sbjct: 397 TFVVFVNDPELMHFSYKRFLINQLRDNFDFTGTPIKILPRKRK 439 >gi|327312576|ref|YP_004328013.1| ribosome biogenesis GTPase Der [Prevotella denticola F0289] gi|326944058|gb|AEA19943.1| ribosome biogenesis GTPase Der [Prevotella denticola F0289] Length = 437 Score = 246 bits (629), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 147/458 (32%), Positives = 241/458 (52%), Gaps = 30/458 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +AIVG PNVGKSTLFNRL + + A+V + G TRDR YG+ NG F++VDT G Sbjct: 1 MANLVAIVGRPNVGKSTLFNRLTQTRHAIVSDTAGTTRDRQYGKCQWNGREFSVVDTGGW 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + + Q +A EA L+LFL+D++ G+T +D + LR+ +P+++V+NK Sbjct: 61 VVKSDDIFEDAIRKQVLVATEEADLVLFLVDTETGVTDWDEDVAMILRRTKLPVLLVANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D E Y L E + +SA GT +L ++ + K Sbjct: 121 VDNSGEYYQAAEFYKLGLGEPICVSAATGGGTGDLLDILLEKLK---------------- 164 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 ++P E++ + R AVVGRPN GKS++IN +G +R + +G TRD Sbjct: 165 --DAPDESVDQDIP----------RFAVVGRPNAGKSSIINAFIGEDRNIVTEIAGTTRD 212 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ + + DTAG+R+ +++TE LE +V +S++S+ + I++LDAT E Sbjct: 213 SIYTRYTKFGFDFYLVDTAGIRRKNKVTEDLEFYSVMRSIRSIENSDVCILMLDATRGIE 272 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAI-KNLPQIGDIYINTISGR 359 QD+ I + ++V+ +NKWD+V DK + D AI K + D I S Sbjct: 273 AQDMNIFQLIQRNNKSLVVVVNKWDLVEDKNQKVIDTFENAIRKRMAPFVDFPIIFASAL 332 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 T + + ++ + E+ + I T+ LN + PP ++ +Y ++KY +Q+ ++ Sbjct: 333 TKQRIFKVLETAKEVYQNRTIHIGTTKLNEVMLPIIEATPPQSVKGKYIKIKYCSQLPNT 392 Query: 420 P-PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 PSF+ + P + E Y+R+L N++R N++L G PI Sbjct: 393 QIPSFVFYANLPQYVKEQYRRFLENKIRENWNLHGCPI 430 >gi|326204998|ref|ZP_08194849.1| ribosome-associated GTPase EngA [Clostridium papyrosolvens DSM 2782] gi|325984864|gb|EGD45709.1| ribosome-associated GTPase EngA [Clostridium papyrosolvens DSM 2782] Length = 441 Score = 246 bits (629), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 142/456 (31%), Positives = 236/456 (51%), Gaps = 31/456 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKST FN L ++++V + PG+TRDR+Y + F ++DT GI Sbjct: 6 VAVVGRPNVGKSTFFNYLAGSRISIVEDTPGVTRDRIYTEIEWRSTKFTLIDTGGIEPYS 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I +QM Q E+AI A +I+F++D K G+T D + + LRK P+++ NK+D R Sbjct: 66 EDIIMQQMKRQAEIAIETADVIVFMVDGKDGMTATDKEVATMLRKSQKPVVLCVNKVD-R 124 Query: 125 IAQ--RNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 I + + YE Y+L ++ IS+ H LG +L IF+ F + E + Sbjct: 125 IGEPPPDVYEFYNLGMGDMQIISSVHGLGMGDLLDAIFEHFPEDTDAEEDEDV------- 177 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 +++AVVG+PN GKS+LIN +LG NR++ + G TRD++ Sbjct: 178 ---------------------IKVAVVGKPNAGKSSLINSILGENRVIVSNIPGTTRDAI 216 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 DTAG+RK S+I E++E+ + +S ++ + ++++DA +Q Sbjct: 217 DTHVEMDGQKYTFIDTAGIRKRSKINETIEKYSTIRSWTAIERADVCLIMIDAEDGVTEQ 276 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D +I G A ++ +NKWD++ + L++ R + L + + IS +TG+ Sbjct: 277 DTKIAGYAHQQGKASIIVVNKWDLIEKQTGTLEEYRKVVHEKLGFMTYAPVLFISAKTGQ 336 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 ++ + + + RI+T LN + + PP+ + ++ Y+TQ+ PP+ Sbjct: 337 RVNKIYELIKFVADQAAFRISTGMLNDLVNEAVAMVQPPSDKGKRLKIYYMTQVGIKPPA 396 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 F+IF + SY+RYL N+LR NF G PIR Sbjct: 397 FVIFVNDLDLFHYSYERYLENQLRKNFGFEGTPIRF 432 >gi|281425284|ref|ZP_06256197.1| hypothetical protein HMPREF0971_02256 [Prevotella oris F0302] gi|299141484|ref|ZP_07034620.1| ribosome-associated GTPase EngA [Prevotella oris C735] gi|281400577|gb|EFB31408.1| ribosome-associated GTPase EngA [Prevotella oris F0302] gi|298576820|gb|EFI48690.1| ribosome-associated GTPase EngA [Prevotella oris C735] Length = 437 Score = 246 bits (628), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 152/458 (33%), Positives = 242/458 (52%), Gaps = 30/458 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +AIVG PNVGKSTLFNRL + + A+V + G TRDR YG+ N F++VDT G Sbjct: 1 MANLVAIVGRPNVGKSTLFNRLTQSRRAIVSDTAGTTRDRQYGKCSWNAKEFSVVDTGGW 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + + Q +A EA L+LFL+D G+T +D + + LR+ +P+I+V+NK Sbjct: 61 VVKSDDIFEDAIRRQVLVATEEADLVLFLVDVTTGVTDWDEDVATILRRAKLPVILVANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D E Y L E ISA GT +L +I Q+ P E IE Sbjct: 121 VDNSSEYYEAAEFYKLGIGEPQCISAATGGGTGDLLDMIVDKLPQENP----ETIE---- 172 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 +E P R AVVGRPN GKS++IN +G +R + +G TRD Sbjct: 173 -DEIP-------------------RFAVVGRPNAGKSSIINAFIGEDRNIVTEIAGTTRD 212 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ ++ + DTAG+R+ ++++E LE +V +S++++ + I++LDAT E Sbjct: 213 SIYTRFDKFGFDFYLVDTAGIRRKNKVSEDLEFYSVMRSIRAIENSDVCILMLDATRGVE 272 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKN-LPQIGDIYINTISGR 359 QD+ I + ++V+ +NKWD+V +K + D AI+N + D I S Sbjct: 273 AQDMNIFQLIQKNNKSLVVVVNKWDLVEEKSQKVIDTFEAAIRNRMAPFVDFPIIFASAL 332 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 T + + ++ + ++ KT + TS LN + PP ++ +Y ++KY TQ+ ++ Sbjct: 333 TKQRIFRVLETAKQVYLNRKTHVGTSKLNEVMLPIIEAYPPQSVKGKYIKIKYCTQLPNT 392 Query: 420 P-PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 PSF+ + P + E+Y+R+L N++R N+S+ G PI Sbjct: 393 QIPSFVFYANLPQYVKENYRRFLENKIRENWSMHGCPI 430 >gi|260583467|ref|ZP_05851215.1| ribosome-associated GTPase EngA [Granulicatella elegans ATCC 700633] gi|260158093|gb|EEW93161.1| ribosome-associated GTPase EngA [Granulicatella elegans ATCC 700633] Length = 437 Score = 246 bits (628), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 148/463 (31%), Positives = 247/463 (53%), Gaps = 34/463 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKST+FNR+V +++++V + G+TRDR+Y + G F+I+DT GI D Sbjct: 6 IAIVGRPNVGKSTIFNRVVGERISIVEDIAGVTRDRIYSEGEWLGHQFHIIDTGGI-DIT 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + Q E+A+ EA +I+FL K G+T D I L + N P+++ NK+D Sbjct: 65 DEPFMSNIRMQAEIAMEEADVIIFLTSVKEGVTSTDEHIAKMLYRTNKPVLLAVNKVDNP 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + ++ Y+L F E IS H LG +L K F P H +++ ++ Sbjct: 125 ELRSDIFDFYALGFGEPFPISGSHGLGLGDLLDAAVKAF----PEH------DDQEDD-- 172 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 + +R + +GRPNVGKS+L+N +LG R++ + +G TRD++ Sbjct: 173 ----------------TDVIRFSFIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAIDT 216 Query: 245 SWNWKNHPI-EIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 S+ + I ++ DTAG+RK R+ ES E+ +V ++++++ + V+L+A ++QD Sbjct: 217 SFTDEEGTIFKMIDTAGIRKKGRVFESTEKYSVLRALRAIERSDIVCVVLNAEEGIQEQD 276 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 +I G V++ +NKWD + + ++ K + I +S +T + Sbjct: 277 KKIAGYAHEAGKGVIILVNKWDTLEKDNSTFKEFEQNIRKEFLYLSYAPILFVSAKTKQR 336 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLK--YITQIQSSPP 421 L + + EI+++ RI++S LN L NP PT ++ NRLK Y+TQ+ PP Sbjct: 337 LVKIAPLLKEIHEVRSKRISSSILNDVLMDAIAMNPTPT--DKGNRLKIYYMTQVAIQPP 394 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 +F++F + SY+R+L NR+R F G PI M + K Sbjct: 395 TFVVFVNDVELMHFSYERFLENRIRSAFGFEGTPIHMIVRQRK 437 >gi|305681382|ref|ZP_07404189.1| ribosome-associated GTPase EngA [Corynebacterium matruchotii ATCC 14266] gi|305659587|gb|EFM49087.1| ribosome-associated GTPase EngA [Corynebacterium matruchotii ATCC 14266] Length = 484 Score = 246 bits (628), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 145/463 (31%), Positives = 240/463 (51%), Gaps = 42/463 (9%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI- 60 + T+ IVG PNVGKSTL NR + ++ AVV + PG+TRDR+ A G F + DT G Sbjct: 50 LCTVTIVGRPNVGKSTLVNRFLGRREAVVEDFPGVTRDRISYIADWGGQRFWVQDTGGWD 109 Query: 61 --ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVS 118 G + +IA+Q E A+ A +I+ ++D+K GIT D + L ++P+I+V+ Sbjct: 110 PNVKGIHGAIARQ----AETAMETADVIVMVVDTKVGITETDAVMARKLHGASVPVILVA 165 Query: 119 NKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 NK D+ + + E Y+L + +SA+H G +++ I + F Sbjct: 166 NKFDSDMQYADMAEFYALGLGDPWPVSAQHGRGGADVLDEILRSFP-------------- 211 Query: 179 KRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 + P++ +EG P R+A+VG+PNVGKS+L+N++ G R + +G T Sbjct: 212 ----DQPRQPSITEG---------PRRVALVGKPNVGKSSLLNKIAGEERSVVDDVAGTT 258 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 D V H + DTAG+RK + + E ++ + E + ++D++ P Sbjct: 259 VDPVDSLVQLDGHLWKFIDTAGLRKKVKNAQGHEYYASLRTRGVIDAAEVCLFMIDSSEP 318 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSD--KLNLLQDLRTKAIKNLPQIGDIYINTI 356 +QD R++ + + G A+VL NKWD++++ + L +D+ + + ++P + + I+ Sbjct: 319 VSEQDQRVLSMILDAGKALVLVFNKWDLMTEDRRWELERDIEQQ-LAHIPWVRRVNISAK 377 Query: 357 SGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQI 416 +GR + L+ M LE W RITT LN+WL+ T QNPPP R R+ + TQ Sbjct: 378 TGRALQKLEPYMEEALEN---WDKRITTGQLNTWLRATMAQNPPPMKGGRIPRVLFATQA 434 Query: 417 QSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 + PP ++F T + Y+RYL + R F G P+R+ Sbjct: 435 STQPPVIVLFTT--GFLDAGYRRYLERKFREAFGFEGTPVRIA 475 >gi|291519504|emb|CBK74725.1| ribosome-associated GTPase EngA [Butyrivibrio fibrisolvens 16/4] Length = 441 Score = 246 bits (628), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 147/466 (31%), Positives = 245/466 (52%), Gaps = 37/466 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFN L +++++V + PG+TRDR+Y F ++DT GI Sbjct: 6 VAIVGRPNVGKSTLFNALAGERISIVKDTPGVTRDRIYADVSWLNYDFTMIDTGGIEPDT 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 N I QM +Q ++AI+ A +I+FL+D K G+ D + LR+ + P+I+V NK+D+ Sbjct: 66 NDIILSQMREQAQIAIDTADVIIFLVDVKQGLQDSDSKVADMLRRSHKPVILVVNKVDSF 125 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + YE Y+L + + +SA LG ++ + + F ++ + ++ Sbjct: 126 ERDMADVYEFYNLGIGDPIPVSASSRLGFGDMLDKVVEYFPEQ---------SGEEEEDD 176 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 +PK IAV+G+PNVGKS+LIN+L G R++ +G TRD+V Sbjct: 177 TPK-------------------IAVIGKPNVGKSSLINKLCGEERVIVSDIAGTTRDAVD 217 Query: 244 ISWNWKNHPIEIF-DTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + NH IF DTAG+R+ S+I E LE+ ++ +++ SV + I+++DAT +Q Sbjct: 218 TRVRY-NHKDYIFIDTAGLRRKSKIKEDLERYSIVRAVASVEKADVVIIMIDATEGVTEQ 276 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTK---AIKNLPQIGDIYINTISGR 359 D +I G +++ +NKWD + +++ TK + +P ++I+ SG+ Sbjct: 277 DAKIAGIAHERGKGIIICVNKWDAIEKNDKTMKEHETKIRQILSFMPYASILFISVKSGQ 336 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 + + + +V+E N + RI T LN + + PPT + ++ Y TQ+ Sbjct: 337 RLGKIYETIDAVIENNSM---RIATGVLNEIVSEAVALQQPPTDKGKRLKIFYTTQVAVK 393 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 PP+F+IF + SY RYL NR+R F G ++ + K Sbjct: 394 PPTFVIFVNEKYLMHFSYVRYLENRIRDAFGFEGTSLKFIIRERKE 439 >gi|256847158|ref|ZP_05552604.1| ribosome-associated GTPase EngA [Lactobacillus coleohominis 101-4-CHN] gi|256715822|gb|EEU30797.1| ribosome-associated GTPase EngA [Lactobacillus coleohominis 101-4-CHN] Length = 437 Score = 246 bits (628), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 143/461 (31%), Positives = 246/461 (53%), Gaps = 31/461 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNR+ +++++V + PG+TRDR+Y A G FN++DT GI D Sbjct: 7 VAIVGRPNVGKSTLFNRIAGERISIVEDTPGVTRDRIYTHAEWLGKNFNLIDTGGI-DMS 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + Q+ +Q E+AI+EA +I+ ++D + GIT D + L + N P+++ NK+D Sbjct: 66 DQPLTTQIREQAEVAIDEADVIVLVVDVQNGITDADEKVAQLLYRSNKPVVLAVNKVDNP 125 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + Y+ YSL E +S+ H +G +L + K F +N++++ Sbjct: 126 ERRSDIYDFYSLGLGEPYPVSSVHGIGLGDLLDAVIKNFPDT---------ADNQKDDS- 175 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 +R +++GRPNVGKS+L+N +LG R++ +G TRD+++ Sbjct: 176 -------------------IRFSLIGRPNVGKSSLVNAILGQQRVIVSDIAGTTRDAINT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + + DTAG++K ++ E+ E+ + +SM+++ + +V+L+A D Sbjct: 217 QFVADHRKFTMVDTAGIKKKGKLYENTERYALMRSMKAIDDSDVVLVVLNADEGIRDLDK 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQ-IGDIYINTISGRTGEG 363 I G V++ +NKWD++ ++ + T I+N Q + I +S T + Sbjct: 277 HIAGYAHEAGKGVIIVVNKWDLIKNRDHRTMTDFTTLIRNEFQYLSYAPIIFVSAVTKQR 336 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 L + + E+ + RI +S LN L NP P+ + R+ Y TQ+ PP+F Sbjct: 337 LIKIPQLIEEVYDHARRRIKSSTLNDVLMDAIAANPTPSTNGKRLRVYYGTQVAVEPPTF 396 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 +IF P+ + SY+RYL NR+R F SG PI + ++ K Sbjct: 397 VIFVNDPDLMHFSYERYLENRIREAFDFSGTPIHLIKRARK 437 >gi|297621840|ref|YP_003709977.1| GTP-binding protein EngA [Waddlia chondrophila WSU 86-1044] gi|297377141|gb|ADI38971.1| GTP-binding protein EngA [Waddlia chondrophila WSU 86-1044] Length = 454 Score = 246 bits (628), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 141/458 (30%), Positives = 243/458 (53%), Gaps = 41/458 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKS+LFNR+ KK+MA+V GITRDRLY +A G F ++DT GI Sbjct: 7 LAIVGRPNVGKSSLFNRICKKRMAIVDEAEGITRDRLYAEADCFGKEFEVIDTGGINPRS 66 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +Q+ Q E+AI EA ++ +D+ GIT DH + L N P+ + NK+D Sbjct: 67 QVPFNEQIMRQAEIAIEEADGLILAVDAHTGITDLDHEVARVLLHTNKPVTVAVNKID-H 125 Query: 125 IAQRNF-YEIYSLDFKEIVEISAEHDLGTSE-LHSVIFKIFKQKYPNHPLEMIENNKRNE 182 + Q + +E Y L F+ V +SAE + +E L S++ ++ + P+E + E Sbjct: 126 LGQIDLVHEFYGLGFEHCVGVSAEQNFQIAELLESIVSRL------SSPIE------KEE 173 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 E + +++A++GRPNVGKSTL N LL R L G TRDSV Sbjct: 174 E----------------LDTSIKVAIIGRPNVGKSTLTNYLLDEERCLVSPIPGTTRDSV 217 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + + + DTAG+R+ E++++ ++ +++ C+ ++++DA Q Sbjct: 218 DVRVSHDDEIYTFIDTAGIRRKGAEHEAVDKFAAIRTQRAIERCDICLLMVDAQQGITAQ 277 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSD--KLNLLQDLRTKA--IKNLPQIGDIYINTISG 358 + RI + G ++ LNKWD+V + +++ + ++ P+I +S Sbjct: 278 EKRIAKMIEKEGKCCIVLLNKWDLVKGFRMEHCFREIEEEIHFLRYCPKI------ILSA 331 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 TG ++ + ++ E+ + R++T LN ++++ QN PP I + R+ Y+ Q+ + Sbjct: 332 ETGRNVEKIFPTIREVRQESLKRVSTGELNKFVEEAIRQNHPPMIRGKRLRIYYLAQVST 391 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 PP+F++F + + ES+++YLIN+ R + +G P+ Sbjct: 392 EPPTFVLFINHQDLMAESWRKYLINQFRKVYRFTGAPL 429 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 36/137 (26%), Positives = 71/137 (51%), Gaps = 4/137 (2%) Query: 201 SKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAG 260 +KP ++A+VGRPNVGKS+L NR+ + GITRD + + E+ DT G Sbjct: 3 NKP-KLAIVGRPNVGKSSLFNRICKKRMAIVDEAEGITRDRLYAEADCFGKEFEVIDTGG 61 Query: 261 MRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLA 320 + S++ ++ ++++ ++ + I+ +DA D + + +T V +A Sbjct: 62 INPRSQV--PFNEQIMRQAEIAIEEADGLILAVDAHTGITDLDHEVARVLLHTNKPVTVA 119 Query: 321 LNKWDMVSDKLNLLQDL 337 +NK D + +++L+ + Sbjct: 120 VNKIDHLG-QIDLVHEF 135 >gi|296112016|ref|YP_003622398.1| GTP-binding protein EngA [Leuconostoc kimchii IMSNU 11154] gi|295833548|gb|ADG41429.1| GTP-binding protein EngA [Leuconostoc kimchii IMSNU 11154] Length = 437 Score = 246 bits (628), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 139/461 (30%), Positives = 239/461 (51%), Gaps = 30/461 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST+FNR+ +++A+V + PG+TRDRLY A F ++DT GI G Sbjct: 6 VAIVGRPNVGKSTIFNRMAGERIAIVEDQPGVTRDRLYAPAEWLNYEFRMIDTGGIELGD 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +A ++ Q ELAI+EA +I+ + + G+T D + L K PI++ NK+D Sbjct: 66 EPFLA-EIRAQVELAIDEADVIVMVASGREGVTSADEVVAKMLYKTAKPIVLAINKVDNP 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 +++ Y+ YSL E +S H LG ++ + K F Sbjct: 125 EMRQDIYDFYSLGLGEPYPVSGAHGLGLGDMLDAVVKNF--------------------- 163 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P E E + +K +++GRPNVGKS+++N +LG +R++ S G TRD++ Sbjct: 164 PDEAAEQEDEGVIK-------FSIIGRPNVGKSSIVNAMLGEDRVIVSSIEGTTRDAIDT 216 Query: 245 SW-NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + + + DTAGMRK ++ E+ E+ +V ++++++ ++++DA +QD Sbjct: 217 RFVTPEGDEFIMVDTAGMRKRGKVYENTEKYSVMRALKAIDNSNVILMVIDAEAGIREQD 276 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 + G A+++ +NKWD + ++D + I +S +TG+ Sbjct: 277 KHVAGFAHEAGRAMIIVVNKWDAIEKDDRTMKDFENLIRAEFKFLDYAPIIFVSAKTGQR 336 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 LD L V +++ + R+++S LN + NP P+ R R+ Y TQ+ PP+F Sbjct: 337 LDRLPQLVRDVDDNHRKRVSSSTLNDVIMDAIAVNPTPSDNGRRLRVYYATQVAIQPPTF 396 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 +IF + SY+R+L N++R F +G PI++ ++ K Sbjct: 397 VIFVNDVELMHFSYERFLENKIREAFDFTGTPIKLIIRARK 437 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/125 (32%), Positives = 69/125 (55%), Gaps = 3/125 (2%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAII-NGVIFNIVDTAGI 60 + +I+G PNVGKS++ N ++ + +V + G TRD + + + G F +VDTAG+ Sbjct: 175 VIKFSIIGRPNVGKSSIVNAMLGEDRVIVSSIEGTTRDAIDTRFVTPEGDEFIMVDTAGM 234 Query: 61 AD-GKNCSIAKQMNDQTEL-AINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVS 118 GK ++ + L AI+ +++IL +ID++AGI D + F + +IIV Sbjct: 235 RKRGKVYENTEKYSVMRALKAIDNSNVILMVIDAEAGIREQDKHVAGFAHEAGRAMIIVV 294 Query: 119 NKMDT 123 NK D Sbjct: 295 NKWDA 299 >gi|187928156|ref|YP_001898643.1| GTP-binding protein EngA [Ralstonia pickettii 12J] gi|238691801|sp|B2U9V3|DER_RALPJ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|187725046|gb|ACD26211.1| small GTP-binding protein [Ralstonia pickettii 12J] Length = 447 Score = 246 bits (628), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 149/468 (31%), Positives = 238/468 (50%), Gaps = 31/468 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+ + F +DT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRSRDALVADIPGLTRDRHYGEGRVGDRPFIAIDTGGFEPVA 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I +M QT A+ EA +++F++D + G+ P D I +LRK I++ NK + Sbjct: 65 KEGIVAEMAKQTRQAVVEADVVIFIVDGRLGLAPQDRVIADYLRKTGRRILLAVNKAEGM 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + Y L + ISA H G ++L + + + P E+ E ++ Sbjct: 125 RYTAVASDFYELGLGDPAAISAAHGDGVNDLVAEALDLAFAERP----ELAEAADAHDHG 180 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 RIA+VGRPNVGKSTL+N L+G R++ G TRD++ + Sbjct: 181 -------------------TRIAIVGRPNVGKSTLVNALIGEERVIAFDMPGTTRDAIYV 221 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + P + DTAG+RK ++ E++E+ +V K++QS+ +++LDA QD Sbjct: 222 DFERNGKPYTLIDTAGLRKRGKVFEAIEKFSVVKTLQSIADANVVVLILDAQQDISDQDA 281 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSD--KLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 I + +G A+V+ +NKWD ++ + + D+ K L + ++ IS + Sbjct: 282 HIAGFIVESGRALVIGVNKWDGLTGHARDRIKHDMERK----LQFLSFANVHYISAKERT 337 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWL-QKTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 G+ LM SV ++ T L L + + Q P +R +L+Y Q S+PP Sbjct: 338 GIGALMKSVDAAYAAAMVKLPTPKLTRVLMEAVEYQQPRRAGVSR-PKLRYAHQGGSNPP 396 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIK 469 +I + IPE+Y+R+L R R F L G P+R+ F+++KNPY + Sbjct: 397 IVVIHGNALSNIPETYRRFLEGRFREAFQLKGTPLRIEFRTNKNPYAQ 444 >gi|227515173|ref|ZP_03945222.1| GTP-binding protein EngA [Lactobacillus fermentum ATCC 14931] gi|227086505|gb|EEI21817.1| GTP-binding protein EngA [Lactobacillus fermentum ATCC 14931] Length = 437 Score = 246 bits (628), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 144/462 (31%), Positives = 242/462 (52%), Gaps = 32/462 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNR+ +++A+V + PG+TRDRLY G F+++DT GI + Sbjct: 6 VAIVGRPNVGKSTLFNRIAGERIAIVEDTPGVTRDRLYAHGEWLGKNFSMIDTGGI-EMS 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + Q+ Q E+AI EA +I+ +++ + G+T D + L + N P+++ NK+D Sbjct: 65 DQPLLTQIRQQAEIAIEEADVIIMVVNVENGVTDADEQVAQILYRSNKPVVLAVNKVDNP 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + Y+ Y L E +S+ H +G ++ + + F +K + E N R Sbjct: 125 ERRLDVYDFYQLGLGEPYPVSSVHGVGLGDMLDAVIENFAEK------DAEEENDR---- 174 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 +R + +GRPNVGKS+L+N +LG NR++ +G TRD+++ Sbjct: 175 -------------------IRFSFIGRPNVGKSSLVNAILGENRVIVSDMAGTTRDAINT 215 Query: 245 SWNWKN-HPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + K+ + DTAG++K ++ E+ E+ + +SM+++ + +V+L+A + D Sbjct: 216 QFTAKDGREFTMVDTAGIKKKGKLYENTERYALMRSMRAIDDSDVVLVVLNAEEGIRELD 275 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQ-IGDIYINTISGRTGE 362 I G AV++ +NKWD + D+ T I++ Q + I +S +T + Sbjct: 276 KHIAGYAHEAGRAVIIVVNKWDTIPDRDQRTMTDFTNLIRHEFQYLSYAPIVFVSAKTKQ 335 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 L L + E RI ++ LN L NP P+ R R+ Y TQ+ +PP+ Sbjct: 336 RLSRLPEMIEEAYDHQHRRIQSAVLNDVLMDALAANPTPSSNGRRLRVYYATQVAVAPPT 395 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 F+IF P+ + SY RYL NR+R F +G PIR+ + K Sbjct: 396 FVIFVNDPDLMHFSYARYLENRIRAAFDFTGTPIRLIKRRRK 437 >gi|145295562|ref|YP_001138383.1| GTP-binding protein EngA [Corynebacterium glutamicum R] gi|140845482|dbj|BAF54481.1| hypothetical protein [Corynebacterium glutamicum R] Length = 543 Score = 246 bits (628), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 148/463 (31%), Positives = 243/463 (52%), Gaps = 42/463 (9%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI- 60 + T+AIVG PNVGKSTL NR + ++ AVV + PG+TRDR+ + G F + DT G Sbjct: 104 LCTVAIVGRPNVGKSTLVNRFIGRREAVVEDFPGVTRDRISYISDWGGHRFWVQDTGGWD 163 Query: 61 --ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVS 118 G + SIA+Q E+A++ A +I+F++D+K GIT D + + L + +P+I+V+ Sbjct: 164 PNVKGIHASIAQQ----AEVAMSTADVIVFVVDTKVGITETDSVMAAKLLRSEVPVILVA 219 Query: 119 NKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 NK D+ + E YSL + +SA+H G +++ I ++F Sbjct: 220 NKFDSDSQWADMAEFYSLGLGDPYPVSAQHGRGGADVLDKILELFP-------------- 265 Query: 179 KRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 E P+ EG P R+A+VG+PNVGKS+L+N+ G R + + +G T Sbjct: 266 ----EEPRSKSIVEG---------PRRVALVGKPNVGKSSLLNKFAGETRSVVDNVAGTT 312 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 D V + DTAG+RK + E ++ ++ E ++L+D++ P Sbjct: 313 VDPVDSLIQLDQKLWKFVDTAGLRKKVKTASGHEYYASLRTHGAIDAAELCVLLIDSSEP 372 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSD--KLNLLQDLRTKAIKNLPQIGDIYINTI 356 +QD R++ + + G A+V+A NKWD++ + +++L ++L + + ++P I I Sbjct: 373 ITEQDQRVLAMITDAGKALVIAFNKWDLMDEDRRIDLDRELDLQ-LAHVPWAKRI---NI 428 Query: 357 SGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQI 416 S +TG L L ++LE W RI+T LN+WL++ NPPP R R+ + TQ Sbjct: 429 SAKTGRALQRLEPAMLEALDNWDRRISTGQLNTWLREAIAANPPPMRGGRLPRVLFATQA 488 Query: 417 QSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 + PP ++F T + Y+RYL + R F G P+R+ Sbjct: 489 STQPPVIVLFTT--GFLEAGYRRYLERKFRERFGFEGTPVRIA 529 >gi|148543995|ref|YP_001271365.1| GTP-binding protein EngA [Lactobacillus reuteri DSM 20016] gi|184153389|ref|YP_001841730.1| GTP-binding protein EngA [Lactobacillus reuteri JCM 1112] gi|194467923|ref|ZP_03073909.1| small GTP-binding protein [Lactobacillus reuteri 100-23] gi|166920101|sp|A5VJK4|DER_LACRD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|229784134|sp|B2G718|DER_LACRJ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|148531029|gb|ABQ83028.1| small GTP-binding protein [Lactobacillus reuteri DSM 20016] gi|183224733|dbj|BAG25250.1| GTP-binding protein [Lactobacillus reuteri JCM 1112] gi|194452776|gb|EDX41674.1| small GTP-binding protein [Lactobacillus reuteri 100-23] Length = 437 Score = 246 bits (628), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 142/456 (31%), Positives = 243/456 (53%), Gaps = 32/456 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTLFNR+ +++++V + PG+TRDR+Y A G F+++DT GI + Sbjct: 6 VAVVGRPNVGKSTLFNRIAGERISIVEDTPGVTRDRIYAHAEWLGKHFSMIDTGGI-EIS 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + Q+ Q E+AI+EA +I+F+ D + G+T D + L + N P+++ NK+D Sbjct: 65 DQPLLTQIRQQAEIAIDEADVIIFVADVENGVTDADEQVARILYRSNKPVVLAVNKVDNP 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + Y+ YSL E +S+ H +G +L + K F +N N+E Sbjct: 125 ERRSDIYDYYSLGLGEPYAVSSVHGIGMGDLLDAVIKEFP------------DNAANDE- 171 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 + + +GRPNVGKS+L+N +LG NR++ + +G TRD+++ Sbjct: 172 ----------------DDSIHFSFIGRPNVGKSSLVNAILGENRVIVSNVAGTTRDAINT 215 Query: 245 SWNWKN-HPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + + + DTAG+RK +I E+ E+ ++ +SM+++ + +V+L+A + D Sbjct: 216 QFETADGQKFTMVDTAGIRKKGKIYENTERYSLMRSMRAIDDSDVVLVVLNAEEGIRELD 275 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLN-LLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 I G V++ +NKWD + +K + + D + + I +S +T + Sbjct: 276 KHIAGYAHEAGCGVIIVVNKWDTLKEKDHRTMTDFTNLIRQEFQYLSYAPIIFVSAKTKQ 335 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 L+ L + E+ + + RI ++ LN L NP PT R R+ Y TQ+ + PP+ Sbjct: 336 RLNQLPGLIEEVYQHHRQRIQSAVLNDVLMDAIAANPTPTQNGRRLRVYYGTQVATEPPT 395 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 F+IF P + SY+RYL N++R F SG PI + Sbjct: 396 FVIFVNDPELMHFSYERYLENQIRKAFDFSGTPIHL 431 >gi|188997363|ref|YP_001931614.1| small GTP-binding protein [Sulfurihydrogenibium sp. YO3AOP1] gi|229807528|sp|B2V5W6|DER_SULSY RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|188932430|gb|ACD67060.1| small GTP-binding protein [Sulfurihydrogenibium sp. YO3AOP1] Length = 445 Score = 246 bits (627), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 148/465 (31%), Positives = 240/465 (51%), Gaps = 25/465 (5%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 ++ +AIVG PNVGKS+LFNR++ ++ A+V + PG+TRDR+ A GV F +VDT G Sbjct: 1 MFRVAIVGIPNVGKSSLFNRIIGQRKAIVEDIPGVTRDRIVSTAEWRGVKFEVVDTGGYI 60 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 G A + Q E + + L +F++D K G+TP D I + L + P+I+ NK+ Sbjct: 61 TGDEDKFAPYIRKQVEKELELSDLFIFVVDGKQGLTPLDKEIANILHRTEKPVIVAVNKI 120 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D ++ YE Y L F+ I+ ISA LG +EL +K Sbjct: 121 DDPEKEKLAYEFYELGFENIIPISAIQKLGLAELL---------------------DKVV 159 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 E P+ + + + +++A+VG+PN GKS+LIN LL R+L G TRD+ Sbjct: 160 EYIPEYEKEIQEEEEKEEKRDYIKVAIVGKPNAGKSSLINALLNEERVLVSEIPGTTRDT 219 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 V I + DTAGMRK S++ LE +V ++++++ + ++++DA + Sbjct: 220 VDILYEKDGQKFLFLDTAGMRKKSKVDFGLEFFSVGRTIEAIEKADVVVLVIDANQGATE 279 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTG 361 QD +I + V+ +NK D V K L+ + + + L I I S +T Sbjct: 280 QDTKIAGLIQRRYKPAVIVINKIDTVDKK--TLEKVEKQVRERLYFISYAPIVFTSAKTK 337 Query: 362 EGLDDLMVSVLEI-NKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 EGLD+L+ ++ + N+ WK R+ T LN +++ Q PPT + ++ Y TQ++ P Sbjct: 338 EGLDELLEKIVYVYNQAWK-RVGTGQLNRAIKQIQNLRQPPTYQGKPLKIYYATQLEGKP 396 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 P+FL+F E+Y ++L N LR L PI++ F+ + Sbjct: 397 PAFLLFVNKAEGFKENYVKFLENNLRKLLGLENAPIKLIFRGKEE 441 >gi|303239305|ref|ZP_07325833.1| ribosome-associated GTPase EngA [Acetivibrio cellulolyticus CD2] gi|302593091|gb|EFL62811.1| ribosome-associated GTPase EngA [Acetivibrio cellulolyticus CD2] Length = 440 Score = 246 bits (627), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 141/464 (30%), Positives = 242/464 (52%), Gaps = 39/464 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST FN L +++++V + PG+TRDR+Y + F ++DT GI Sbjct: 6 VAIVGRPNVGKSTFFNYLAGRRISIVEDTPGVTRDRIYTEVEWRNRKFTLIDTGGIEPYS 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I +QM Q E+AI A++I+F++D K G+T D+ + + LRK P+I+V NK+D R Sbjct: 66 EDKIMQQMKSQAEIAIETANVIVFMVDRKDGLTASDNEVATLLRKSKKPVILVVNKVD-R 124 Query: 125 IAQ--RNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 + + YE Y+L +++ +S+ H LG +L I+K F + E + Sbjct: 125 VGELPAEVYEFYNLGIGDLMTVSSIHGLGMGDLLDEIYKYFPDETEEEYDEEV------- 177 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 +++AV+G+PN GKS+LIN++LG +R++ G TRD++ Sbjct: 178 ---------------------IKVAVIGKPNAGKSSLINKVLGEDRVIVSDIPGTTRDAI 216 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + DTAG+R+ S+I E++E+ + +S ++ + ++++DA +Q Sbjct: 217 DTYVENEEGKFVFIDTAGIRRQSKINENIERYSTIRSWTAIERADVCLIMIDAEEGVTEQ 276 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D +I G A ++ +NKWD+V L++ R ++ L + + IS ++G+ Sbjct: 277 DTKIAGYAHEQGKASIVVVNKWDLVEKNTGTLEEYRKTVLEKLGFMLYAPVMFISAKSGQ 336 Query: 363 GLDDLMVSVLEINKLWKT----RITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 ++ V E+ K R++T LN L + PP+ + ++ Y+TQ Sbjct: 337 RVN----KVFELTKFVANQSALRVSTGVLNDLLNEATAMVQPPSDKGKRLKIYYMTQASV 392 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 PP+F++F + SY+RYL N+LR +F G PIR + Sbjct: 393 KPPTFVLFINSIELMHYSYERYLENQLRKSFGFEGTPIRFMLRE 436 >gi|295396781|ref|ZP_06806916.1| ribosome-associated GTPase EngA [Brevibacterium mcbrellneri ATCC 49030] gi|294970365|gb|EFG46305.1| ribosome-associated GTPase EngA [Brevibacterium mcbrellneri ATCC 49030] Length = 503 Score = 246 bits (627), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 153/462 (33%), Positives = 242/462 (52%), Gaps = 40/462 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL NR++ ++ AVV + PG+TRDR+ A G +VDT G D Sbjct: 70 LAIVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYTAHWAGRDITLVDTGGW-DID 128 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +A ++ +Q E+A+ A ++F++D GIT D I LRK P+I+ +NK+D Sbjct: 129 SKGMASRIAEQAEIAVELADAVVFVLDVHTGITSTDEHIVRMLRKTGKPVIVAANKVDDE 188 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 ++ +E+++L E +SA H G ++L +I E S Sbjct: 189 RSELAAFELWNLGLGEPSPVSAMHGRGVADLLDRAVEILP-----------------EVS 231 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 + + EG P R+A++GRPNVGKS+L+NRL+G R++ + +G TRD V Sbjct: 232 GVDQMVEEGG--------PRRVALIGRPNVGKSSLLNRLVGSERVMVDNVAGTTRDPVDE 283 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + DTAG+RK +R + + ++ ++ E +VLL+A P +QDL Sbjct: 284 LVVLGDRQWRFVDTAGIRKRARQSSGADYYAALRTQTALERAEVALVLLEADQPISEQDL 343 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLP-QIGDI----YINTISGR 359 R+++SV G A+VL NKWD+ L +D R + K + Q+G + +N IS + Sbjct: 344 RVINSVIEAGRALVLVFNKWDL------LDEDRRLELEKEIEMQLGHVSWAPRVN-ISAK 396 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 TG D L+ ++ K W TRI T LN++L + NP P + R+ + TQ Sbjct: 397 TGRHADKLVPALDAALKGWDTRIPTGRLNAFLGELVAANPHPLRGGKQPRILFGTQAHPR 456 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 PP F++F T + Y+R++ RLR F +G P+ + + Sbjct: 457 PPKFVLFTT--GFLDPGYRRFITRRLRETFDFTGTPVEINMR 496 >gi|255656611|ref|ZP_05402020.1| GTP-binding protein EngA [Clostridium difficile QCD-23m63] gi|296449935|ref|ZP_06891699.1| ribosome-associated GTPase EngA [Clostridium difficile NAP08] gi|296878317|ref|ZP_06902325.1| ribosome-associated GTPase EngA [Clostridium difficile NAP07] gi|296261205|gb|EFH08036.1| ribosome-associated GTPase EngA [Clostridium difficile NAP08] gi|296430615|gb|EFH16454.1| ribosome-associated GTPase EngA [Clostridium difficile NAP07] Length = 441 Score = 246 bits (627), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 141/458 (30%), Positives = 240/458 (52%), Gaps = 30/458 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKST+FN+ K++++V N PG+TRDR++ + F +VDT GI Sbjct: 8 VAVVGRPNVGKSTIFNKFAGKRISIVENTPGVTRDRIFAEVEWLDKYFTLVDTGGIEPDS 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I QM +Q LA++ +H+ILF++D KAGIT D I LRK P+I+V NK+D++ Sbjct: 68 EDIILSQMRNQAMLAMDMSHVILFIVDGKAGITAADKEIAQLLRKTKKPVILVVNKIDSQ 127 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 N Y+ Y L F +S + +G +L E++EN ++ Sbjct: 128 SQFDNIYDFYELGFGTPFAVSGANSMGFGDLLD---------------EIVENFPAGLDT 172 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 E +R+A+ G+PN GKS+++N++LG R++ +G TRD++ Sbjct: 173 EYE-------------EDIIRVAITGKPNAGKSSILNKILGEERVIVSPIAGTTRDAIDT 219 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + DTAG+R+ S+I E++E+ +V ++M +V + ++++DA +QD Sbjct: 220 YFEKNGQKFLLIDTAGLRRKSKIYETIEKYSVIRAMSAVDRADVVLIVIDALEGVTEQDT 279 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKN-LPQIGDIYINTISGRTGEG 363 ++ + G + +NKWD++ +K N TK IK P + I +S +T + Sbjct: 280 KVAGIAHDEGKGCIFVINKWDLI-EKDNKTMSNYTKDIKEKFPFMMYAPIVFVSAKTNQR 338 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 ++ ++ +V ++ RI+TS LN + + + N PP+ R ++ Y TQ PP Sbjct: 339 MNKILDTVEYVSNEHSKRISTSALNEVIGEAVMLNQPPSDKGRRLKIYYGTQTDIRPPKI 398 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 +F SY+RYL N++R NF G I+ ++ Sbjct: 399 TLFINDKELTHFSYQRYLENKIRENFGFEGTSIKFEYR 436 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 41/141 (29%), Positives = 66/141 (46%), Gaps = 2/141 (1%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 I +AI G PN GKS++ N+++ ++ +V G TRD + NG F ++DTAG+ Sbjct: 178 IIRVAITGKPNAGKSSILNKILGEERVIVSPIAGTTRDAIDTYFEKNGQKFLLIDTAGLR 237 Query: 62 DGKNC--SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 +I K + A++ A ++L +ID+ G+T D + + I V N Sbjct: 238 RKSKIYETIEKYSVIRAMSAVDRADVVLIVIDALEGVTEQDTKVAGIAHDEGKGCIFVIN 297 Query: 120 KMDTRIAQRNFYEIYSLDFKE 140 K D Y+ D KE Sbjct: 298 KWDLIEKDNKTMSNYTKDIKE 318 >gi|189463677|ref|ZP_03012462.1| hypothetical protein BACINT_00008 [Bacteroides intestinalis DSM 17393] gi|189438627|gb|EDV07612.1| hypothetical protein BACINT_00008 [Bacteroides intestinalis DSM 17393] Length = 437 Score = 246 bits (627), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 153/454 (33%), Positives = 235/454 (51%), Gaps = 30/454 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNRL K + A+V G TRDR YG++ G F++VDT G Sbjct: 5 VAIVGRPNVGKSTLFNRLTKTRQAIVNEEAGTTRDRQYGKSEWLGKEFSVVDTGGWVVNS 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +++ Q +A++EA +ILF++D G+T D + + LR+ P+++++NK D Sbjct: 65 DDIFEEEIRKQVLMAVDEADVILFVVDVMNGVTDLDMQVAAILRRTQKPVLLIANKTDNG 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 Q N E Y L + ISA GT ++ +I FK K +E Sbjct: 125 ELQYNAPEFYKLGLGDPYCISAMTGSGTGDMMDLIVGTFK--------------KDTDEI 170 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 E+I R AVVGRPN GKS+++N +G R + +G TRDS+ Sbjct: 171 LDEDIP--------------RFAVVGRPNAGKSSIVNAFIGEERNIVTEIAGTTRDSIYT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 +N + DTAG+RK +++ E LE +V +S++S+ + I++LDAT E QDL Sbjct: 217 RYNKFGFDFYLVDTAGIRKKNKVNEDLEYYSVIRSIRSIENADVCILMLDATRGVESQDL 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKN-LPQIGDIYINTISGRTGEG 363 I + +V+ +NKWD+V DK + AI++ D I S T + Sbjct: 277 NIFSLIQKNAKGLVVVVNKWDLVQDKTVKVMKTFEDAIRSRFAPFVDFPIIFGSALTKQR 336 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP-PS 422 + ++ + TRI T+ LN + PPP +Y ++KYITQ+ ++ PS Sbjct: 337 ILKVLEEARSVYDNRMTRIPTARLNEEMLPLIEAYPPPATKGKYIKIKYITQLPNTQVPS 396 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 F+ F P + E YKR+L N++R ++L+G PI Sbjct: 397 FVYFANLPQYVKEPYKRFLENKMREKWNLTGTPI 430 >gi|226954466|ref|ZP_03824930.1| GTP-binding protein EngA [Acinetobacter sp. ATCC 27244] gi|294651482|ref|ZP_06728795.1| GTP-binding protein EngA [Acinetobacter haemolyticus ATCC 19194] gi|226834815|gb|EEH67198.1| GTP-binding protein EngA [Acinetobacter sp. ATCC 27244] gi|292822632|gb|EFF81522.1| GTP-binding protein EngA [Acinetobacter haemolyticus ATCC 19194] Length = 469 Score = 246 bits (627), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 147/467 (31%), Positives = 250/467 (53%), Gaps = 37/467 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA++G PNVGKSTLFN++ K + A+V + G+TRDR YG A+ F +VDT GI + Sbjct: 5 IALIGRPNVGKSTLFNQITKSRDALVADFAGLTRDRKYGDAVYQNKSFIVVDTGGIGE-N 63 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I M +Q++ AI+EA +I+F++D++AG+ D I LR + +V+NK+D Sbjct: 64 EGGIDSYMAEQSKTAIHEADIIVFVVDARAGLLASDEQIARELRTLGKKVYLVANKVDGV 123 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 A+ E Y L E ++++A H G ++ LE + +E+ Sbjct: 124 HAEAALVEFYKLGMGEPLQVAASHGRGVQQM----------------LEDVLAEVPEDEN 167 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P+E+ + G LR+A++GRPNVGKSTL+NRLLG R++ Q G TRDS+ I Sbjct: 168 PEEHNKNTG----------LRLAIIGRPNVGKSTLVNRLLGEERVVAFDQPGTTRDSIYI 217 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + DTAG+R+ ++ E +E+ ++ K++Q+++ ++++DA +QDL Sbjct: 218 PFERDGRQYTLIDTAGVRRKGKVDEMIEKFSIVKTLQAMKDANVVVIVVDAREGIVEQDL 277 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIY----INTISGRT 360 ++ G A+V+A+NKWD N+ + R + ++ + D I+ IS Sbjct: 278 HLIGYALEAGRAMVIAINKWD------NMTEYDRKQCKLDVERRFDFIPWAKIHLISALH 331 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G G+ +L S+ + +++ + L L + PP I R +++Y +P Sbjct: 332 GTGVGELYPSIHRAYESSNLKVSPAKLTQILNDATEAHQPPMISGRRIKMRYAHMGGQNP 391 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 P+ +I +K P Y+RYL N R + L G P+++ F++S+NP+ Sbjct: 392 PTIVIHGNKVDKTPADYRRYLENVFRKVYKLEGTPVKIDFKTSENPF 438 >gi|134094495|ref|YP_001099570.1| GTP-binding protein EngA [Herminiimonas arsenicoxydans] gi|166198721|sp|A4G4K6|DER_HERAR RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|133738398|emb|CAL61443.1| GTP-binding protein EngA [Herminiimonas arsenicoxydans] Length = 447 Score = 246 bits (627), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 157/469 (33%), Positives = 243/469 (51%), Gaps = 37/469 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+ + F ++DT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRMGERPFLVIDTGGFEPVA 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK---M 121 I +M QT+ A+ EA +++F++D + G+TP+D IT FLRK +++V NK M Sbjct: 65 KEGIMHEMAKQTKQAVAEADVVIFIVDGRQGLTPHDKTITDFLRKSGRSVMLVVNKAEGM 124 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKI-FKQKYPNHPLEMIENNKR 180 + +FYE L + ISA H G S+L I F Q+ P Sbjct: 125 KYTMVTADFYE---LGLGDPYVISAAHGDGVSDLVEESLDIAFAQRPP------------ 169 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 EE P+ + +R+A+VGRPNVGKSTL+N LLG R++ G TRD Sbjct: 170 EEEVPESK------------DRSIRLAIVGRPNVGKSTLVNTLLGEERVIAFDLPGTTRD 217 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ I + + + DTAG+R+ ++ E++E+ +V K++QS+ ++LLDA Sbjct: 218 SIEIPFEREGKLYTLIDTAGIRRRGKVFEAIEKFSVVKTLQSISEANVVLLLLDAQQDIS 277 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWD-MVSDKLNLLQ-DLRTKAIKNLPQIGDIYINTISG 358 +QD I + +G A+V+ +NKWD + SD+ + ++ DL K L + + +S Sbjct: 278 EQDAHIAGFILESGRALVVGVNKWDGLTSDRRDEIKIDLERK----LGFLSFAKTHFVSA 333 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 G+ +M SV + ++T L L + P + +L+Y Q Sbjct: 334 LKSSGIGPMMKSVDNAYAAAMSNLSTPKLTRALIEAVEHQQPRRKGSIRPKLRYAHQGGM 393 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 +PP +I + I +YKR+L R FSL G P+R+ +S KNP+ Sbjct: 394 NPPIVVIHGNALDAIDANYKRFLEKHFRETFSLVGTPLRIELRSGKNPF 442 >gi|227364908|ref|ZP_03848953.1| GTP-binding protein EngA [Lactobacillus reuteri MM2-3] gi|325682467|ref|ZP_08161984.1| ribosome-associated GTPase EngA [Lactobacillus reuteri MM4-1A] gi|227070055|gb|EEI08433.1| GTP-binding protein EngA [Lactobacillus reuteri MM2-3] gi|324978306|gb|EGC15256.1| ribosome-associated GTPase EngA [Lactobacillus reuteri MM4-1A] Length = 440 Score = 246 bits (627), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 142/456 (31%), Positives = 243/456 (53%), Gaps = 32/456 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTLFNR+ +++++V + PG+TRDR+Y A G F+++DT GI + Sbjct: 9 VAVVGRPNVGKSTLFNRIAGERISIVEDTPGVTRDRIYAHAEWLGKHFSMIDTGGI-EIS 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + Q+ Q E+AI+EA +I+F+ D + G+T D + L + N P+++ NK+D Sbjct: 68 DQPLLTQIRQQAEIAIDEADVIIFVADVENGVTDADEQVARILYRSNKPVVLAVNKVDNP 127 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + Y+ YSL E +S+ H +G +L + K F +N N+E Sbjct: 128 ERRSDIYDYYSLGLGEPYAVSSVHGIGMGDLLDAVIKEFP------------DNAANDE- 174 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 + + +GRPNVGKS+L+N +LG NR++ + +G TRD+++ Sbjct: 175 ----------------DDSIHFSFIGRPNVGKSSLVNAILGENRVIVSNVAGTTRDAINT 218 Query: 245 SWNWKN-HPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + + + DTAG+RK +I E+ E+ ++ +SM+++ + +V+L+A + D Sbjct: 219 QFETADGQKFTMVDTAGIRKKGKIYENTERYSLMRSMRAIDDSDVVLVVLNAEEGIRELD 278 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLN-LLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 I G V++ +NKWD + +K + + D + + I +S +T + Sbjct: 279 KHIAGYAHEAGCGVIIVVNKWDTLKEKDHRTMTDFTNLIRQEFQYLSYAPIIFVSAKTKQ 338 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 L+ L + E+ + + RI ++ LN L NP PT R R+ Y TQ+ + PP+ Sbjct: 339 RLNQLPGLIEEVYQHHRQRIQSAVLNDVLMDAIAANPTPTQNGRRLRVYYGTQVATEPPT 398 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 F+IF P + SY+RYL N++R F SG PI + Sbjct: 399 FVIFVNDPELMHFSYERYLENQIRKAFDFSGTPIHL 434 >gi|326791376|ref|YP_004309197.1| ribosome-associated GTPase EngA [Clostridium lentocellum DSM 5427] gi|326542140|gb|ADZ83999.1| ribosome-associated GTPase EngA [Clostridium lentocellum DSM 5427] Length = 441 Score = 246 bits (627), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 143/458 (31%), Positives = 237/458 (51%), Gaps = 29/458 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A++G PNVGKSTLFNRL K K ++V + PG+TRDR+YG+ F I+DT GI Sbjct: 6 VAVIGRPNVGKSTLFNRLTKSKTSIVDDTPGVTRDRIYGEVEWLNHKFTIIDTGGIEPDS 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I QM Q E AI A +I+FL+D K G+T D + + LRK + P+++V NK+D Sbjct: 66 TDIILSQMRRQAEAAIESADVIIFLVDVKTGMTDADTHVANMLRKSHKPVVLVVNKVDDM 125 Query: 125 IAQ-RNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + Q YE Y+L E + IS+ L ++ + F P+ E E++K Sbjct: 126 VHQTMGMYEFYNLGLGEPIPISSGQALNLGDMLDEVVSYF----PDEDAEAEEDDK---- 177 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 +R+A++G+PNVGKS+L+N+++G R++ + +G TRDSV Sbjct: 178 --------------------IRVAIIGKPNVGKSSLVNKIVGEERVIVSNIAGTTRDSVD 217 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + + DTAG+R+ S+I E++E+ ++ +++ ++ + ++L+DA +QD Sbjct: 218 TEVTIEGQEYVLIDTAGIRRRSKIKENIEKYSIIRTIAAIDRADVVLILIDAEEGITEQD 277 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 +I G ++ +NKWD + + K L + IS TG+ Sbjct: 278 TKIAGMAHEAGKGCIIVVNKWDAIEKDDKTMNAYLKKITNTLAYMQYAPCMFISALTGQR 337 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 + L ++ I + RI+T LN L + N PP+ + ++ Y+TQ+ PP+F Sbjct: 338 IPKLFDTIYAIAQNQSQRISTGVLNDVLYEAMAMNQPPSDKGKPLKIFYMTQVSIKPPTF 397 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 +IF + SY+RY+ N++R F G P+R + Sbjct: 398 VIFVNDKELMHFSYQRYIENQMREAFGFKGTPLRFIVR 435 >gi|259046866|ref|ZP_05737267.1| ribosome-associated GTPase EngA [Granulicatella adiacens ATCC 49175] gi|259036489|gb|EEW37744.1| ribosome-associated GTPase EngA [Granulicatella adiacens ATCC 49175] Length = 437 Score = 246 bits (627), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 148/463 (31%), Positives = 244/463 (52%), Gaps = 34/463 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKST+FNR+V +++++V + G+TRDR+Y + G FNI+DT GI D Sbjct: 6 IAVVGRPNVGKSTIFNRIVGERISIVEDIAGVTRDRIYSEGEWLGHSFNIIDTGGI-DIT 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + Q E+A+ EA +I+FL K G+T D I L + N P+++ NK+D Sbjct: 65 DEPFMSNIRMQAEIAMEEADVIIFLTSVKEGVTTTDEHIAKLLYRTNKPVLLAVNKVDNP 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + ++ Y+L F E IS H LG +L K F Sbjct: 125 ELRSEIFDFYALGFGEPFPISGSHGLGLGDLLDAAVKAF--------------------- 163 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P++ E K +K + +GRPNVGKS+L+N +LG R++ + +G TRD++ Sbjct: 164 PEDKGDEEDKDVIK-------FSFIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAIDT 216 Query: 245 SWNWKNHPI-EIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 ++ + + ++ DTAG+RK R+ ES E+ +V ++++++ + V+L+A ++QD Sbjct: 217 TFEDEEGTVFKMIDTAGIRKKGRVFESTEKYSVLRALRAIERSDIVCVVLNAEEGIQEQD 276 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 +I G VV+ +NKWD + + ++ K + + I +S +T + Sbjct: 277 KKIAGYAHEAGKGVVILVNKWDTLEKDNSTYKEFEDKIRQEFLYLSYAPIIFVSAKTKQR 336 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLK--YITQIQSSPP 421 L + + EI+++ RI++S LN L NP PT ++ NRLK Y+TQ+ + PP Sbjct: 337 LSKIPPILKEIHEVRSRRISSSVLNDVLMDAIAMNPTPT--DKGNRLKIYYMTQVANQPP 394 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 +F+ F + SY+R+L NR+R F G PI M + K Sbjct: 395 TFVTFVNDVELMHFSYERFLENRIRSAFGFEGTPIHMITRQRK 437 >gi|294102070|ref|YP_003553928.1| ribosome-associated GTPase EngA [Aminobacterium colombiense DSM 12261] gi|293617050|gb|ADE57204.1| ribosome-associated GTPase EngA [Aminobacterium colombiense DSM 12261] Length = 436 Score = 245 bits (626), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 141/458 (30%), Positives = 237/458 (51%), Gaps = 29/458 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKS+LFNR++ ++ A+V + PG+TRDR+YG+ G F IVDT G+ Sbjct: 4 IAIVGRPNVGKSSLFNRILGRREAIVDDMPGVTRDRIYGETEWKGRQFYIVDTGGLLVRD 63 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + + Q LAI E+H+ILF+ID G D + LR+ P+I+V+NK+D Sbjct: 64 EHPLVEGIRKQATLAIEESHVILFVIDGFNGPNWMDEDVAHILRRSGKPVIVVANKLDDG 123 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 I + Y+ YSL F+ +V ISA H ++Y + ++M + Sbjct: 124 IHEDRVYDAYSLGFEHVVGISALH----------------KRYIDDLMDMAVS------- 160 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 + + +R+++VGRPNVGKS+L+N L G +R+L G TRD+ Sbjct: 161 -----LLPSDEEEERDPEEIRVSIVGRPNVGKSSLVNALAGSDRVLVSDIPGTTRDATDT 215 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 K DTAG+RK SRI +E + +++Q+V + ++++DA+ P QD Sbjct: 216 VIEMKEGKFRFIDTAGLRKKSRIDSDIEYYSFVRTLQAVDRSDVALLVMDASEPTTDQDK 275 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 ++ V G ++L +NKWD + L ++R + +P + + +S T GL Sbjct: 276 KMAAQVIEKGKGLILLINKWDTLEAADKLGDEMRKRVRDEMPFLSHAPLLFVSALTKRGL 335 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKT-QLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 + L ++ + + RI T+ LN ++ Q P + R ++ Y TQ PP+F Sbjct: 336 NKLTQTIKNVQENRSRRIGTTELNRLIRDVLAFQTLPTSRKGRVLKIYYCTQTSIEPPTF 395 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 + F P + +S+ +++ N++R + G P+R+ ++ Sbjct: 396 VFFVNDPEIVSQSFNKHIENKIREMDTFDGTPLRLYWR 433 >gi|288924558|ref|ZP_06418495.1| ribosome-associated GTPase EngA [Prevotella buccae D17] gi|315607420|ref|ZP_07882416.1| ribosome-associated GTPase EngA [Prevotella buccae ATCC 33574] gi|288338345|gb|EFC76694.1| ribosome-associated GTPase EngA [Prevotella buccae D17] gi|315250852|gb|EFU30845.1| ribosome-associated GTPase EngA [Prevotella buccae ATCC 33574] Length = 437 Score = 245 bits (626), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 150/458 (32%), Positives = 242/458 (52%), Gaps = 30/458 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +AIVG PNVGKSTLFNRL + + A+V + G TRDR YG+ NG F++VDT G Sbjct: 1 MASLVAIVGRPNVGKSTLFNRLTQSRRAIVSDTAGTTRDRQYGKCQWNGREFSVVDTGGW 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + + Q +A EA L+LFL+D G+T +D + LR+ +P+I+V+NK Sbjct: 61 VVKSDDIFEDAIRRQVLVATEEADLVLFLVDVSTGVTDWDEDVAMILRRTKLPVILVANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D E Y L + ISA GT +L +I + + K Sbjct: 121 VDNSSEYYEAAEFYKLGLGDPHCISAATGGGTGDLLDLILEKMQPK-------------- 166 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 EE +++I R AVVGRPNVGKS++IN +G +R + +G TRD Sbjct: 167 EEEELEDDIP--------------RFAVVGRPNVGKSSIINAFIGEDRNIVTEIAGTTRD 212 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ ++ + DTAG+R+ ++++E LE +V +S++++ + I+++DAT E Sbjct: 213 SIYTRYDKFGFDFYLVDTAGIRRKNKVSEDLEFYSVMRSIRAIENSDVCILMIDATRGIE 272 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIK-NLPQIGDIYINTISGR 359 QD+ I + ++V+ +NKWD+V DK + D AI+ + D I S Sbjct: 273 TQDMNIFQLIQKNNKSLVVVVNKWDLVEDKTQKVIDTFENAIRARMAPFVDFPIIFSSAV 332 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 T + + ++ + ++ K R+ TS LN + PP +I +Y ++KY TQ+ ++ Sbjct: 333 TKQRIFKVLETAKQVYLNRKIRVGTSKLNEVMLPIIEAYPPQSIKGKYIKIKYCTQLPNT 392 Query: 420 P-PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 PSF+ + P + E+Y+R+L N++R N+S+ G PI Sbjct: 393 QIPSFVFYANLPQYVKENYRRFLENKIRENWSMHGCPI 430 >gi|315641243|ref|ZP_07896320.1| ribosome-associated GTPase EngA [Enterococcus italicus DSM 15952] gi|315483010|gb|EFU73529.1| ribosome-associated GTPase EngA [Enterococcus italicus DSM 15952] Length = 442 Score = 245 bits (626), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 144/459 (31%), Positives = 243/459 (52%), Gaps = 35/459 (7%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAIVG PNVGKST+FNR+ +++++V + PG+TRDR+Y G F+I+DT GI D Sbjct: 11 TIAIVGRPNVGKSTVFNRIAGERISIVEDTPGVTRDRIYATGEWLGKDFSIIDTGGI-DL 69 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + +Q+ Q E+AI+EA +I+F+ ++ GIT D ++ L + P+I+ NK+D Sbjct: 70 SDEPFMEQIKHQAEIAIDEADVIVFVTSAREGITDADESVAHLLYRSKKPVILAVNKVDN 129 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + YE YSL E IS H LG ++ K F E+ Sbjct: 130 PEMRAEIYEFYSLGLGEPYPISGSHGLGLGDVLDEAVKHF-----------------GED 172 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 + +E+ ++ +R +++GRPNVGKS+LIN +LG +R++ G TRD++ Sbjct: 173 TEEEDDST------------IRFSLIGRPNVGKSSLINAILGEDRVIVSDVEGTTRDAID 220 Query: 244 ISWNWKN-HPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + ++ + DTAGMRK ++ ES E+ +V ++M+++ + +V+L+A +Q Sbjct: 221 THFTSESGQEFTMIDTAGMRKRGKVYESTEKYSVMRAMRAIERSDVVLVVLNADEGIREQ 280 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D +I G +++ +NKWD+V N ++D + + + I +S T + Sbjct: 281 DKKIAGYAHEEGRGIIIIVNKWDLVKKDTNTMRDFEKEIREEFQYLDYAPILFVSAMTKQ 340 Query: 363 GLDDL--MVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 L+ L M+ + +N+ R+ ++ LN + NP PT + ++ Y TQ+ P Sbjct: 341 RLNQLPEMIESVSMNQ--SMRVPSAVLNDVIMDAVAINPTPTDKGKRLKVFYATQVAIKP 398 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 P+F+IF + SY R+L N++R F G PIR+ Sbjct: 399 PTFVIFVNEEELMHFSYARFLENQIRKAFIFEGTPIRII 437 >gi|19552644|ref|NP_600646.1| GTP-binding protein EngA [Corynebacterium glutamicum ATCC 13032] gi|62390312|ref|YP_225714.1| GTP-binding protein EngA [Corynebacterium glutamicum ATCC 13032] gi|41325649|emb|CAF21438.1| GTPase of unknown function [Corynebacterium glutamicum ATCC 13032] Length = 543 Score = 245 bits (626), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 147/463 (31%), Positives = 243/463 (52%), Gaps = 42/463 (9%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI- 60 + T+AIVG PNVGKSTL NR + ++ AVV + PG+TRDR+ + G F + DT G Sbjct: 104 LCTVAIVGRPNVGKSTLVNRFIGRREAVVEDFPGVTRDRISYISDWGGHRFWVQDTGGWD 163 Query: 61 --ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVS 118 G + SIA+Q E+A++ A +I+F++D+K GIT D + + L + +P+I+V+ Sbjct: 164 PNVKGIHASIAQQ----AEVAMSTADVIVFVVDTKVGITETDSVMAAKLLRSEVPVILVA 219 Query: 119 NKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 NK D+ + E YSL + +SA+H G +++ + ++F Sbjct: 220 NKFDSDSQWADMAEFYSLGLGDPYPVSAQHGRGGADVLDKVLELFP-------------- 265 Query: 179 KRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 E P+ EG P R+A+VG+PNVGKS+L+N+ G R + + +G T Sbjct: 266 ----EEPRSKSIVEG---------PRRVALVGKPNVGKSSLLNKFAGETRSVVDNVAGTT 312 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 D V + DTAG+RK + E ++ ++ E ++L+D++ P Sbjct: 313 VDPVDSLIQLDQKLWKFVDTAGLRKKVKTASGHEYYASLRTHGAIDAAELCVLLIDSSEP 372 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSD--KLNLLQDLRTKAIKNLPQIGDIYINTI 356 +QD R++ + + G A+V+A NKWD++ + +++L ++L + + ++P I I Sbjct: 373 ITEQDQRVLAMITDAGKALVIAFNKWDLMDEDRRIDLDRELDLQ-LAHVPWAKRI---NI 428 Query: 357 SGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQI 416 S +TG L L ++LE W RI+T LN+WL++ NPPP R R+ + TQ Sbjct: 429 SAKTGRALQRLEPAMLEALDNWDRRISTGQLNTWLREAIAANPPPMRGGRLPRVLFATQA 488 Query: 417 QSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 + PP ++F T + Y+RYL + R F G P+R+ Sbjct: 489 STQPPVIVLFTT--GFLEAGYRRYLERKFRERFGFEGTPVRIA 529 >gi|172040767|ref|YP_001800481.1| bifunctional cytidylate kinase/GTP-binding protein [Corynebacterium urealyticum DSM 7109] gi|171852071|emb|CAQ05047.1| cytidylate kinase [Corynebacterium urealyticum DSM 7109] Length = 784 Score = 245 bits (626), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 147/464 (31%), Positives = 237/464 (51%), Gaps = 40/464 (8%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI- 60 + T+AIVG PNVGKSTL NR + ++ AVV + PG+TRDR+ G F + DT G Sbjct: 349 LCTVAIVGRPNVGKSTLVNRFIGRREAVVEDFPGVTRDRISYLGDWGGRRFWVQDTGGWD 408 Query: 61 --ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVS 118 A G + +IA+Q E A+ A I+F++D+K GIT D I L++ ++P+I+V+ Sbjct: 409 PDAKGIHAAIARQ----AETAMATADAIVFVVDTKVGITETDEVIARKLQRSDVPVIVVA 464 Query: 119 NKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 NK ++ + E ++L +SA H G +++ + ++F Sbjct: 465 NKFESDTQYADMAEFWALGLDNPYPVSALHGRGAADVLDKLLEVFP-------------- 510 Query: 179 KRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 E+P+E + +S P R+A+VGRPNVGKS+L+N++ G R + + +G T Sbjct: 511 ----ETPRE---------LSVVSGPRRVALVGRPNVGKSSLLNKISGEQRSVVDNVAGTT 557 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 D V + DTAG+RK + E ++ ++ E + L DA+ P Sbjct: 558 VDPVDSIVELEERTWRFVDTAGIRKKVKNAVGHEYYASLRTRAAIDASEVVVFLADASEP 617 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMV-SDKLNLLQDLRTKAIKNLPQIGDIYINTIS 357 +QD R++ + + G A+V+A NKWD+V D+ LL+ + ++P + IS Sbjct: 618 IAEQDQRVLRMILDAGKALVVAFNKWDLVDEDRRELLEREIDLQLSHVPWARRV---NIS 674 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 +TG L L +++E W RI T LN+WL+ + PPP R R+ + TQ Sbjct: 675 AKTGRALQKLEPAMMEALDSWDQRIPTGQLNTWLRAVIAETPPPMRGGRLPRVLFATQAS 734 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 S PP ++F T + Y+R+L +LR F G P+R+ + Sbjct: 735 SRPPVIVLFTT--GFLEHGYRRFLERKLRETFGFEGSPVRIAIR 776 >gi|227543422|ref|ZP_03973471.1| GTP-binding protein EngA [Lactobacillus reuteri CF48-3A] gi|300910088|ref|ZP_07127548.1| ribosome-associated GTPase EngA [Lactobacillus reuteri SD2112] gi|227186601|gb|EEI66672.1| GTP-binding protein EngA [Lactobacillus reuteri CF48-3A] gi|300892736|gb|EFK86096.1| ribosome-associated GTPase EngA [Lactobacillus reuteri SD2112] Length = 440 Score = 245 bits (626), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 142/456 (31%), Positives = 243/456 (53%), Gaps = 32/456 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTLFNR+ +++++V + PG+TRDR+Y A G F+++DT GI + Sbjct: 9 VAVVGRPNVGKSTLFNRIAGERISIVEDTPGVTRDRIYAHAEWLGKHFSMIDTGGI-EIS 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + Q+ Q E+AI+EA +I+F+ D + G+T D + L + N P+++ NK+D Sbjct: 68 DQPLLTQIRQQAEVAIDEADVIIFVADVENGVTDADEQVARILYRSNKPVVLAVNKVDNP 127 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + Y+ YSL E +S+ H +G +L + K F +N N+E Sbjct: 128 ERRSDIYDYYSLGLGEPYAVSSVHGIGMGDLLDAVIKEFP------------DNAANDE- 174 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 + + +GRPNVGKS+L+N +LG NR++ + +G TRD+++ Sbjct: 175 ----------------DDSIHFSFIGRPNVGKSSLVNAILGENRVIVSNVAGTTRDAINT 218 Query: 245 SWNWKN-HPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + + + DTAG+RK +I E+ E+ ++ +SM+++ + +V+L+A + D Sbjct: 219 QFETADGQKFTMVDTAGIRKKGKIYENTERYSLMRSMRAIDDSDVVLVVLNAEEGIRELD 278 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLN-LLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 I G V++ +NKWD + +K + + D + + I +S +T + Sbjct: 279 KHIAGYAHEAGCGVIIVVNKWDTLKEKDHRTMTDFTNLIRQEFQYLSYAPIIFVSAKTKQ 338 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 L+ L + E+ + + RI ++ LN L NP PT R R+ Y TQ+ + PP+ Sbjct: 339 RLNQLPGLIEEVYQHHRQRIQSAVLNDVLMDAIAANPTPTQNGRRLRVYYGTQVATEPPT 398 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 F+IF P + SY+RYL N++R F SG PI + Sbjct: 399 FVIFVNDPELMHFSYERYLENQIRKAFDFSGTPIHL 434 >gi|288803890|ref|ZP_06409315.1| ribosome-associated GTPase EngA [Prevotella melaninogenica D18] gi|288333655|gb|EFC72105.1| ribosome-associated GTPase EngA [Prevotella melaninogenica D18] Length = 437 Score = 245 bits (626), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 151/458 (32%), Positives = 242/458 (52%), Gaps = 30/458 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +AIVG PNVGKSTLFNRL + + A+V + G TRDR YG+ NG F+IVDT G Sbjct: 1 MANLVAIVGRPNVGKSTLFNRLTQTRHAIVSDTAGTTRDRQYGKCQWNGREFSIVDTGGW 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + + Q +A EA L+LF++D++ GIT +D + LR+ +P+++V+NK Sbjct: 61 VVKSDDIFEDAIRKQVLVATEEADLVLFVVDTETGITDWDEDVALILRRTKLPVLLVANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D E Y L E + ISA GT +L + ++EN K Sbjct: 121 VDNSGEYYQAAEFYKLGLGEPICISAATGGGTGDLLDI---------------LLENLK- 164 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 + P+E + + R AVVGRPN GKS++IN +G +R + +G TRD Sbjct: 165 --DVPEEAVDQDIP----------RFAVVGRPNAGKSSIINAFIGEDRNIVTEIAGTTRD 212 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ + + DTAG+R+ ++++E LE +V +S++S+ E I++LDAT E Sbjct: 213 SIYTRYTKFGFDFYLVDTAGIRRKNKVSEDLEFYSVMRSIRSIENSEVCILMLDATRGIE 272 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAI-KNLPQIGDIYINTISGR 359 QD+ I + ++V+ +NKWD+V DK + D AI K + D I S Sbjct: 273 AQDMNIFQLIQRNNKSLVVVVNKWDLVEDKNQKVIDTFENAIRKRMAPFVDFPIIFASAL 332 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 T + + ++ + E+ + I T+ LN + PP ++ +Y ++KY +Q+ ++ Sbjct: 333 TKQRIFKVLETAKEVYQNRTMHIGTTKLNEVMLPIIEATPPQSVKGKYIKIKYCSQLPNT 392 Query: 420 P-PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 PSF+ + P + E Y+R+L N++R N++L G PI Sbjct: 393 QIPSFVFYANLPQYVKEQYRRFLENKIRENWNLHGCPI 430 >gi|26006713|sp|Q8NQK6|DER_CORGL RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|21324196|dbj|BAB98821.1| Predicted GTPases [Corynebacterium glutamicum ATCC 13032] Length = 519 Score = 245 bits (626), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 147/463 (31%), Positives = 243/463 (52%), Gaps = 42/463 (9%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI- 60 + T+AIVG PNVGKSTL NR + ++ AVV + PG+TRDR+ + G F + DT G Sbjct: 80 LCTVAIVGRPNVGKSTLVNRFIGRREAVVEDFPGVTRDRISYISDWGGHRFWVQDTGGWD 139 Query: 61 --ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVS 118 G + SIA+Q E+A++ A +I+F++D+K GIT D + + L + +P+I+V+ Sbjct: 140 PNVKGIHASIAQQ----AEVAMSTADVIVFVVDTKVGITETDSVMAAKLLRSEVPVILVA 195 Query: 119 NKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 NK D+ + E YSL + +SA+H G +++ + ++F Sbjct: 196 NKFDSDSQWADMAEFYSLGLGDPYPVSAQHGRGGADVLDKVLELFP-------------- 241 Query: 179 KRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 E P+ EG P R+A+VG+PNVGKS+L+N+ G R + + +G T Sbjct: 242 ----EEPRSKSIVEG---------PRRVALVGKPNVGKSSLLNKFAGETRSVVDNVAGTT 288 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 D V + DTAG+RK + E ++ ++ E ++L+D++ P Sbjct: 289 VDPVDSLIQLDQKLWKFVDTAGLRKKVKTASGHEYYASLRTHGAIDAAELCVLLIDSSEP 348 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSD--KLNLLQDLRTKAIKNLPQIGDIYINTI 356 +QD R++ + + G A+V+A NKWD++ + +++L ++L + + ++P I I Sbjct: 349 ITEQDQRVLAMITDAGKALVIAFNKWDLMDEDRRIDLDRELDLQ-LAHVPWAKRI---NI 404 Query: 357 SGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQI 416 S +TG L L ++LE W RI+T LN+WL++ NPPP R R+ + TQ Sbjct: 405 SAKTGRALQRLEPAMLEALDNWDRRISTGQLNTWLREAIAANPPPMRGGRLPRVLFATQA 464 Query: 417 QSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 + PP ++F T + Y+RYL + R F G P+R+ Sbjct: 465 STQPPVIVLFTT--GFLEAGYRRYLERKFRERFGFEGTPVRIA 505 >gi|152981185|ref|YP_001353813.1| GTP-binding protein EngA [Janthinobacterium sp. Marseille] gi|166198722|sp|A6SZW6|DER_JANMA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|151281262|gb|ABR89672.1| GTP-binding protein EngA [Janthinobacterium sp. Marseille] Length = 447 Score = 245 bits (626), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 152/466 (32%), Positives = 239/466 (51%), Gaps = 31/466 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA++G PNVGKSTLFNRL + + A+V + PG+TRDR YG+ + F ++DT G Sbjct: 5 IALIGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGERPFLVIDTGGFEPVA 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I +M QT+ A+ EA +++F++D + G+TP+D IT FLRK +++V NK + Sbjct: 65 KEGIMHEMAKQTKQAVAEADVVIFIVDGRQGLTPHDKTITDFLRKSGRSVMLVVNKAEGM 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKI-FKQKYPNHPLEMIENNKRNEE 183 + Y L + ISA H G ++L I F Q+ P EE Sbjct: 125 KYTTVTADFYELGMGDPYVISAAHGDGVNDLVEEALNIAFAQRPP------------EEE 172 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 +P N + +++A+VGRPNVGKSTL+N LLG R++ G TRDS+ Sbjct: 173 APASN------------DRSIKLAIVGRPNVGKSTLVNTLLGEERVIAFDLPGTTRDSIE 220 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 I + + DTAG+R+ ++ E++E+ +V K++QS+ ++LLDA +QD Sbjct: 221 IPFERDGKHYTLIDTAGIRRRGKVFEAIEKFSVVKTLQSISEANVVLLLLDAQQDISEQD 280 Query: 304 LRIVDSVFNTGHAVVLALNKWD-MVSDKLNLLQ-DLRTKAIKNLPQIGDIYINTISGRTG 361 I + +G A+V+ +NKWD + SD+ + ++ DL K L + + +S Sbjct: 281 AHIAGFILESGRALVVGVNKWDGLTSDRRDEIKMDLERK----LSFLSFAKTHFVSALKS 336 Query: 362 EGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 G+ +M SV + ++T L L + P + +L+Y Q +PP Sbjct: 337 SGIGPMMKSVDGAYAAAMSNLSTPKLTRALIEAVEHQQPRRKGSIRPKLRYAHQGGMNPP 396 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 +I I +YKR+L R FSL G P+R+ +S KNP+ Sbjct: 397 IVVIHGNALEAIDANYKRFLEKHFRETFSLVGTPLRIELRSGKNPF 442 >gi|222151373|ref|YP_002560529.1| GTP-binding protein EngA [Macrococcus caseolyticus JCSC5402] gi|254783159|sp|B9E6L5|DER_MACCJ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|222120498|dbj|BAH17833.1| GTP-binding protein EngA [Macrococcus caseolyticus JCSC5402] Length = 436 Score = 245 bits (626), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 144/458 (31%), Positives = 240/458 (52%), Gaps = 33/458 (7%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAIVG NVGKST+FNR+V +++++V + PG+TRDR+Y FNI+DT GI G Sbjct: 5 TIAIVGRANVGKSTIFNRIVGERVSIVEDTPGVTRDRIYSSGEWLTHEFNIIDTGGIELG 64 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + +Q+ Q E+AI EA +I+F+++ + GIT D + L K + P+++ NK+D Sbjct: 65 -DEPFQEQIRAQAEIAIEEADVIIFMVNGRDGITNEDDFVAKLLFKSSKPVVLGVNKIDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + YE YSL F E IS H LG +L K F ++ EE Sbjct: 124 PEMRADIYEFYSLGFGEPFPISGSHGLGIGDLLDEAAKHFPEQ--------------QEE 169 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 +++ ++ +++GRPNVGKS+LIN +LG R++ +G TRD++ Sbjct: 170 DYDDDV--------------IKFSLIGRPNVGKSSLINAILGEERVIVSPVAGTTRDAID 215 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + ++N + DTAGMRK ++ E+ E+ +V ++++++ +V++DA +QD Sbjct: 216 TVYTFENQEYVMIDTAGMRKKGKVYEATERYSVLRALKAIERSNVVLVVIDAEEGIIEQD 275 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 +I G A+V+ +NKWD V ++ K +N + I +S + + Sbjct: 276 KKIAGYAHEAGKAIVIVVNKWDTVEKDSKTMKKFEDKVRENFQFLDYAPIAFVSAKERKR 335 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLK--YITQIQSSPP 421 L+ L + + + R+ +S LN + NP PT ++ +RL Y TQ+ PP Sbjct: 336 LNTLFPLINMAGENHRKRVQSSTLNEVITDAVAMNPTPT--HKGSRLNIFYTTQVAIEPP 393 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 +F+ F + SY+R+L NR+R F G P+ + Sbjct: 394 TFVFFVNDVEMMHFSYQRFLENRIRAAFGFEGTPLHLI 431 >gi|317504953|ref|ZP_07962902.1| ribosome-associated GTPase EngA [Prevotella salivae DSM 15606] gi|315663945|gb|EFV03663.1| ribosome-associated GTPase EngA [Prevotella salivae DSM 15606] Length = 437 Score = 245 bits (625), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 152/454 (33%), Positives = 239/454 (52%), Gaps = 30/454 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNRL + + A+V + G TRDR YG+ N F+IVDT G Sbjct: 5 VAIVGRPNVGKSTLFNRLTQSRRAIVSDTAGTTRDRQYGKCSWNSKEFSIVDTGGWVVNS 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + Q +A EA L+LFL+D G+T +D + LR+ +P+I+V+NK+D Sbjct: 65 DDIFEDAIRRQVLVATEEADLVLFLVDVSTGVTDWDEDVAMILRRAKLPVILVANKVDNN 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 E Y L E ISA GT +L +I Q+ P E +E EE Sbjct: 125 SEYYEAAEFYKLGLGEPQCISAATGGGTGDLLDLIIDKLPQENP----ESVE-----EEI 175 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P R AVVGRPN GKS++IN +G +R + +G TRDS+ Sbjct: 176 P-------------------RFAVVGRPNAGKSSIINAFIGEDRNIVTEIAGTTRDSIYT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 ++ + DTAG+R+ ++++E LE +V +S++++ + I++LDAT E QD+ Sbjct: 217 RYDKFGFDFYLVDTAGIRRKNKVSEDLEFYSVMRSIRAIENSDVCILMLDATRGVEAQDM 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKN-LPQIGDIYINTISGRTGEG 363 I + ++V+ +NKWD+V DK + AI+N + D I S T + Sbjct: 277 NIFQLIQKNKKSLVVVVNKWDLVEDKSQKAINTFEAAIRNRMAPFVDFPIIFASALTKQR 336 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP-PS 422 + ++ + ++ KT + TS LN + PP ++ +Y ++KY TQ+ ++ PS Sbjct: 337 IFRVLETAKQVYLNRKTHVGTSKLNEVMLPLIEAFPPQSVKGKYIKIKYCTQLPNTQIPS 396 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 F+ + P + E+Y+R+L N++R N+S+ G PI Sbjct: 397 FVFYANLPQYVKENYRRFLENKIRENWSMHGCPI 430 >gi|297538116|ref|YP_003673885.1| ribosome-associated GTPase EngA [Methylotenera sp. 301] gi|297257463|gb|ADI29308.1| ribosome-associated GTPase EngA [Methylotenera sp. 301] Length = 484 Score = 245 bits (625), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 155/471 (32%), Positives = 246/471 (52%), Gaps = 34/471 (7%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ T+ +VG PNVGKSTLFNRL K + A+V + PG+TRDR YG+ I + +VDT G Sbjct: 1 MLPTVVLVGRPNVGKSTLFNRLTKSRDALVADLPGLTRDRHYGRGIGASQPYLVVDTGGF 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + I K M QT LAI+EA +I+FL+D + G TP D I + LR+ P+++ NK Sbjct: 61 EPNTDSGILKAMAVQTLLAIDEADVIIFLVDGRQGATPQDMEIANRLRRSKCPVLLAVNK 120 Query: 121 ---MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 M+ + F+E L + + IS+ H G ++ + + F + Sbjct: 121 TEGMNKAVVSAEFHE---LGLGDPLSISSAHGEGVKDIIDLALESFHEV----------- 166 Query: 178 NKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGI 237 EE P+ + T + + ++A+VGRPNVGKSTL+N LLG R++ + G Sbjct: 167 ----EEEPELDQTGD---------RIPKVAIVGRPNVGKSTLVNALLGEERVIAFDEPGT 213 Query: 238 TRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATI 297 TRDS+SI + DTAG+RK R+ E++E+ +V K++QS+ I+++DA Sbjct: 214 TRDSISIDLEKNGKHYTLIDTAGVRKRGRVLEAIEKFSVIKTIQSIEEANVVILVVDAQE 273 Query: 298 PFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAI-KNLPQIGDIYINTI 356 +QD + + + G A+V+A+NKWD + ++ +D + I + L + + I Sbjct: 274 GITEQDAHVAAYILDAGRALVVAINKWDGLKEE---ERDWVKREIDRKLMFLDFAEFHYI 330 Query: 357 SGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQI 416 S +GL +L SV K ++ T L L Q+ PP +L+Y Q Sbjct: 331 SALRKKGLPELFKSVDIAFKAAFAKLATPQLTRVLIDALQQHQPPISKGIRPKLRYAHQG 390 Query: 417 QSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 S+PP +I + + ++Y R+L R F LSG P+R+ ++ NP+ Sbjct: 391 GSNPPIVVIHGNHVDGVKDAYTRFLEKTFRRTFQLSGTPLRVQYKQGANPF 441 >gi|162447731|ref|YP_001620863.1| EngA family GTP-binding protein [Acholeplasma laidlawii PG-8A] gi|161985838|gb|ABX81487.1| GTP-binding protein, EngA family [Acholeplasma laidlawii PG-8A] Length = 438 Score = 245 bits (625), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 135/468 (28%), Positives = 244/468 (52%), Gaps = 36/468 (7%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +T+AIVG PNVGKS+LFNR++ ++ ++ + G+TRDR+Y QA F+++DT GI Sbjct: 1 MPFTVAIVGRPNVGKSSLFNRIIGERFSITDDVAGVTRDRIYAQAEWLTKRFSLIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 D + Q+ Q E+A++EA++I+F++D +G+T D+ I L K + P+I+ NK Sbjct: 61 -DVGDAPFLTQIKHQAEIAMDEANVIIFVVDGLSGLTDSDYYIAKLLYKTDKPVIVAVNK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D + N +E Y+L F + + +S+ H +G +L M+E K Sbjct: 120 IDDIVHAHNAFEFYALGFGDPIAVSSHHGIGVGDLLDKTLSY-----------MVEEEKV 168 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 +E+ + +V+GRPNVGKS+L+N ++G R++ SG T D Sbjct: 169 HEKG------------------IISFSVLGRPNVGKSSLVNAIIGEERVIVSDISGTTTD 210 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 ++ ++ I DTAG++K ++ E+L++ +V ++M ++ + +++LDAT + Sbjct: 211 AIDTTFTKDKQKYTIIDTAGIKKRGKVYENLDKYSVLRAMTALERSDIALLVLDATAGIQ 270 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRT---KAIKNLPQIGDIYINTIS 357 +QD + + ++ +NKWD++ ++ T + K LP ++ +S Sbjct: 271 EQDGHVAGYIMQYMRGCIIVVNKWDLIEKDSKTMKKFETEIRETFKFLPYAPIVF---VS 327 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 + + + + + E+ + + ++ T +N L NPP + Y TQ+ Sbjct: 328 AKENQRVHTIFPVLREVYENFTKQLPTKLVNDTLYDAVAMNPPAIFNHGKANFSYATQVD 387 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 + PP+ IF P I SY+RYL N+ R NF L+G P++ F+ N Sbjct: 388 TKPPTIAIFVNDPVFIHFSYERYLQNQFRDNFELTGTPLKFVFRKKDN 435 >gi|300781237|ref|ZP_07091091.1| ribosome-associated GTPase EngA [Corynebacterium genitalium ATCC 33030] gi|300532944|gb|EFK54005.1| ribosome-associated GTPase EngA [Corynebacterium genitalium ATCC 33030] Length = 506 Score = 245 bits (625), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 150/462 (32%), Positives = 238/462 (51%), Gaps = 39/462 (8%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI--- 60 T+AIVG PNVGKSTL NR + ++ AVV +HPG+TRDR+ + NG F + DT G Sbjct: 72 TVAIVGRPNVGKSTLVNRFLGRREAVVEDHPGVTRDRVSYLSDWNGQRFWVQDTGGWDPD 131 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 A G + SIA Q+E A+ +A +I+ ++DS G+T D + + L++ +P+I+V+NK Sbjct: 132 AKGIHASIAH----QSEAAMADADIIVMVVDSHVGVTESDAVMANNLQRSEVPVILVANK 187 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 ++ + E YSL + +SA H G +++ I K F Sbjct: 188 FESESQWADVAEFYSLGLGDPWPVSALHGRGGADVLDEIVKSFP---------------- 231 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 EE N +EG P R+A+VG+PNVGKS+L+N+L +R + + +G T D Sbjct: 232 -EEPKSANSVTEG---------PRRVALVGKPNVGKSSLLNKLSRADRAVVDNVAGTTVD 281 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 V DTAG+RK + E E ++ ++ E +VL+DA+ Sbjct: 282 PVDELIQLDQKLWRFIDTAGLRKKVKNAEGHEYYASLRTRGTIDAAEVCVVLIDASQEIT 341 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLR-TKAIKNLPQIGDIYINTISGR 359 +QD R++ V + G A+V+A NKWD++ + D + +LP + I I+ +GR Sbjct: 342 EQDQRVISMVLDAGKAMVIAFNKWDLMDEDRRYYFDREFDMQLDHLPWVSKINISAETGR 401 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 L+ M + LE W RI+T LN+W++ NPPP NR ++ + T + + Sbjct: 402 GLHRLEKEMTTALEN---WDKRISTGQLNNWMRDAIAANPPPMKNNRLPKVLFATMVSTR 458 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 PP+ ++F T + Y+RYL + R F G P+R+ + Sbjct: 459 PPTIVLFTT--GFLDGGYRRYLERKFREQFGYHGTPVRIAVR 498 >gi|148653556|ref|YP_001280649.1| GTP-binding protein EngA [Psychrobacter sp. PRwf-1] gi|172048545|sp|A5WGA8|DER_PSYWF RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|148572640|gb|ABQ94699.1| small GTP-binding protein [Psychrobacter sp. PRwf-1] Length = 473 Score = 245 bits (625), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 148/469 (31%), Positives = 244/469 (52%), Gaps = 36/469 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI--AD 62 +A++G PNVGKST+FN++ K + A+V + G+TRDR YG A N F ++DT GI AD Sbjct: 7 VALIGRPNVGKSTIFNQMTKTRQALVADLSGLTRDRQYGDATYNNKSFVVIDTGGIGEAD 66 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 SI M+ Q+ AI+EA +++F++D++AG+ D I L P+ +V+NK+D Sbjct: 67 DGRGSIDDYMSAQSHTAIHEADILVFVVDARAGMIGADAEIGKMLHTLGKPVYLVANKID 126 Query: 123 TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 + E Y+L E ++A H G + L P Sbjct: 127 G-VHDAAPAEFYALGLGEPYPMTASHGRGIANL----LDDLTADMP-------------- 167 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 E++ E + L++A++GRPNVGKSTL+NR+LG R++ G TRDS+ Sbjct: 168 ----EDVEEEDQGG-------LKLAIIGRPNVGKSTLVNRMLGEERVVVYDMPGTTRDSI 216 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 I + + DTAG+R+ RI E +E+ +V K++Q+++ + ++DA Q Sbjct: 217 YIPFERNGKNYVLIDTAGVRRRGRIDEKVEKFSVIKALQAIKDANVVVAVIDAQEGIVDQ 276 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVS-DKLNLLQDLRTKAIKNLPQIGDIYINTISGRTG 361 DL ++ + G A+V+A+NKWD +S DK +++ + +P + ++ IS G Sbjct: 277 DLHMLGYALDAGRAMVVAINKWDGLSEDKKEMIRIELDRRFNFIPY---VKVHFISALHG 333 Query: 362 EGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 + +L S+ + +++T+ L L+ NPPP R +L+Y +PP Sbjct: 334 TNVGNLYPSIHKAYASSMFKVSTNRLTQILEDAVAANPPPMSGGRRIKLRYAHLGGHNPP 393 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +I +P+SY+RYL N R F+L G P+++ F+ + NPY K Sbjct: 394 IIVIHGNQTGSLPKSYQRYLENEFRKVFNLEGTPLKVEFKLNTNPYAGK 442 >gi|86740164|ref|YP_480564.1| GTP-binding protein EngA [Frankia sp. CcI3] gi|86567026|gb|ABD10835.1| Small GTP-binding protein domain [Frankia sp. CcI3] Length = 487 Score = 244 bits (624), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 152/453 (33%), Positives = 235/453 (51%), Gaps = 33/453 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ A+ +G F +VDT G + Sbjct: 51 VAVVGRPNVGKSTLVNRILGRRAAVVEDVPGVTRDRVAYDAVWSGRRFTLVDTGGW-EPD 109 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +A Q+++Q A++ A +LF++D G T D A+ L + +P+I+V+NK+D Sbjct: 110 ATGLAAQVSEQARAALDTADAVLFIVDVVTGATDADEAVARVLHRCGLPVILVANKVDDV 169 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + ++SL E +SA H G+ +L + E+ Sbjct: 170 RFEADAAALWSLGLGEPHPVSALHGRGSGDLLDAVLAALP------------------EA 211 Query: 185 PKENIT-SEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 P+E +T S+G P R+A++GRPNVGKS+L+N+L G R L +G TRD V Sbjct: 212 PREILTESDG---------PRRVALIGRPNVGKSSLLNKLAGSRRSLVHDVAGTTRDPVD 262 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 DTAG+R+ R E + ++ ++ E IVLL A P +QD Sbjct: 263 ELVTVGGEEWMFIDTAGLRRRVREASGAEYYSSLRTASALEAAEVAIVLLAADEPVTEQD 322 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 R++ V + G A+VLA NKWD+V L L + +++L ++ +S RTG Sbjct: 323 QRVISMVVDAGRALVLAFNKWDLVDTDRRLT--LEREIVRDLGRVAWAPRVNVSARTGRA 380 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 D L ++ + W TRI T LN+WL + PPP R ++ + TQ PP F Sbjct: 381 TDRLAPALRTALESWGTRIPTGRLNTWLGEVVAATPPPARGGRVPKVLFATQAGVRPPRF 440 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 ++F T + SY+R+L RLR +F +G PI Sbjct: 441 VVFTT--GFLESSYRRFLERRLREDFGFAGSPI 471 >gi|38233787|ref|NP_939554.1| GTP-binding protein EngA [Corynebacterium diphtheriae NCTC 13129] gi|38200048|emb|CAE49724.1| Putative GTP-binding protein [Corynebacterium diphtheriae] Length = 547 Score = 244 bits (624), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 149/464 (32%), Positives = 239/464 (51%), Gaps = 40/464 (8%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI- 60 + T+AIVG PNVGKS+L NR + ++ AVV + PG+TRDR+ A G F + DT G Sbjct: 112 LCTVAIVGRPNVGKSSLVNRFLGRREAVVEDFPGVTRDRISYLADWGGRRFWVQDTGGWD 171 Query: 61 --ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVS 118 G + IA+Q E A+ A +I+ ++D+K GIT D + L+K +P+I+V+ Sbjct: 172 PNVKGIHAVIARQ----AETAMATADVIVMVVDTKVGITETDSVMARKLQKSEVPVILVA 227 Query: 119 NKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 NK D+ + E Y+L + +SA+H G +++ I F Sbjct: 228 NKFDSDSQYADMAEFYALGLGDPWPVSAQHGRGGADVLEQILAAFP-------------- 273 Query: 179 KRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 E+P+ EG P R+A+VG+PNVGKS+L+N++ G +R + + SG T Sbjct: 274 ----ETPRATSIVEG---------PRRVALVGKPNVGKSSLLNKMSGEDRSVVDNVSGTT 320 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 D V H + DTAG+RK + + E ++ + E I ++D++ P Sbjct: 321 VDPVDSIVKLDKHLWKFIDTAGLRKKVKNAQGHEYYASLRTRGVIDAAEICIFMIDSSEP 380 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWD-MVSDKLNLLQDLRTKAIKNLPQIGDIYINTIS 357 +QD R++ + + G A+VL NKWD M D+ L+ + ++P + I I+ + Sbjct: 381 VSEQDQRVLAMILDAGKALVLVFNKWDLMEEDRRWELEREIDLQLAHIPWVKRINISAKT 440 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 GR + L+ M+ LE W R+TT LN+WL+ T QNPPP R R+ + TQ Sbjct: 441 GRALQRLEPYMLEALE---SWDKRVTTGQLNNWLRATIAQNPPPMKGGRVPRVLFATQAS 497 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 + PP+ ++F T + Y+RYL + R +F G P+++ + Sbjct: 498 TQPPTIVLFTT--GFLDAGYRRYLERKFRESFGFEGSPVKIAVR 539 >gi|311742420|ref|ZP_07716229.1| ribosome-associated GTPase EngA [Aeromicrobium marinum DSM 15272] gi|311314048|gb|EFQ83956.1| ribosome-associated GTPase EngA [Aeromicrobium marinum DSM 15272] Length = 450 Score = 244 bits (624), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 143/455 (31%), Positives = 238/455 (52%), Gaps = 31/455 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A++G PNVGKSTL NR++ ++ AVV + PG+TRDR+ +A NG F +VDT G D Sbjct: 17 LAVIGRPNVGKSTLVNRIIGRREAVVEDVPGVTRDRVAYEATWNGRTFTVVDTGGW-DPD 75 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +A+++ Q E+A+ A +LF++D+ GIT D A+ LR P+++ +NK+D + Sbjct: 76 ARGLAERIAAQAEIAVQVADAVLFVVDATIGITDSDEAVVKILRAAGKPVVLAANKVDDQ 135 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + +++L E +SA H G+ ++ I + P+ P Sbjct: 136 RTEAEAASLWNLGLGEPFPVSALHGRGSGDMLDAILGVL----PDAP------------- 178 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P++ EG P R+A+VG+PNVGKS+L+NRL G R++ SG T D V Sbjct: 179 PEDFDAPEG---------PRRVAIVGKPNVGKSSLLNRLAGEERVVVDDASGTTVDPVDE 229 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 DTAG+R+ R E ++ ++ E ++++DA+ P +QD Sbjct: 230 LVELGGGLWTFIDTAGIRRRVRDASGHEYYASLRTSAAIERAEVAVMIIDASQPLTEQDT 289 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 RI+ +V TG A+V+A NKWD V ++ D + + L Q+ I+ TG + Sbjct: 290 RIISTVAETGRALVIAFNKWDQVDEERRYYLDREIE--RELVQVQWAPRINIAALTGWHV 347 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 D L+ ++ W+TR+ T +LN++L + ++P P + ++ + TQ SPP+F+ Sbjct: 348 DRLVRALDSALDGWETRVPTGHLNAFLGRLVAEHPHPVRGGKQPKILFGTQASISPPTFV 407 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 +F + K+ + Y R++ RLR F G PI + Sbjct: 408 LFTS--GKVEDPYLRFIERRLREEFGFVGSPIHIT 440 >gi|303236880|ref|ZP_07323459.1| ribosome-associated GTPase EngA [Prevotella disiens FB035-09AN] gi|302483048|gb|EFL46064.1| ribosome-associated GTPase EngA [Prevotella disiens FB035-09AN] Length = 437 Score = 244 bits (624), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 152/458 (33%), Positives = 242/458 (52%), Gaps = 30/458 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +AIVG PNVGKSTLFNRL + + A+V + G TRDR YG+ NG F+IVDT G Sbjct: 1 MANLVAIVGRPNVGKSTLFNRLTQSRRAIVSDTAGTTRDRQYGKCQWNGREFSIVDTGGW 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + + Q +A EA +LFL+D++ GIT +D + LR+ +P+I+V+NK Sbjct: 61 VVNSDDIFEDAIRKQVLVATEEADFVLFLVDNETGITDWDEDVAQILRRSKLPVILVANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D E Y L + V ISA+ GT +L + +R Sbjct: 121 VDNSGEYYMSAEFYRLGLGDPVCISAQTGSGTGDLLDL------------------LLER 162 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 ++ P ENI E R AVVGRPN GKS+LIN +G +R + +G TRD Sbjct: 163 MKDLPDENIEEEIP----------RFAVVGRPNAGKSSLINAFIGEDRNIVTEIAGTTRD 212 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ +N + DTAG+R+ +++TE LE +V +S++S+ + I+++DAT E Sbjct: 213 SIYTRYNKFGFDFYLVDTAGIRRKNKVTEDLEFYSVMRSIRSIENSDVCILMIDATRGIE 272 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKN-LPQIGDIYINTISGR 359 QD+ I + ++V+ +NKWD+V DK + AI+ + D I S Sbjct: 273 AQDMNIFQLIQRNNKSLVVVVNKWDLVEDKDQKVIKTFENAIRERMAPFVDFPIIFASAL 332 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 T + + ++ ++ I T+ LN L + PPP++ +Y ++KY +Q+ ++ Sbjct: 333 TKQRIFKILDVAKQVYLNRNIHIGTTKLNEVLLPIIEETPPPSVKGKYIKIKYCSQLPNT 392 Query: 420 P-PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 PSF+ + P + E+Y+R+L N++R +++L+G PI Sbjct: 393 QIPSFVFYANLPQYVREAYRRFLENKIRSHWNLNGCPI 430 >gi|257876568|ref|ZP_05656221.1| GTP-binding protein engA [Enterococcus casseliflavus EC20] gi|257810734|gb|EEV39554.1| GTP-binding protein engA [Enterococcus casseliflavus EC20] Length = 436 Score = 244 bits (624), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 142/457 (31%), Positives = 237/457 (51%), Gaps = 31/457 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAIVG PNVGKST+FNR+ +++++V + PG+TRDR+Y G F+++DT GI D Sbjct: 5 TIAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYATGEWLGREFSVIDTGGI-DL 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + Q+ Q E+AI+EA +I+F+ ++ G+T D + L K N P+I+ NK+D Sbjct: 64 SDEPFMDQIKHQAEIAIDEADVIVFITSAREGVTDADELVARLLYKSNKPVILAVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + YE Y L + IS H LG ++ K F Sbjct: 124 PEMRTDIYEFYGLGLGDPYPISGSHGLGIGDVLDEAVKHF-------------------- 163 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 T+E + +I ++ +++GRPNVGKS+LIN +LG R++ G TRD++ Sbjct: 164 ------TNEAEEEDDSI---IKFSLIGRPNVGKSSLINAILGEERVIVSDIEGTTRDAID 214 Query: 244 ISWNWKN-HPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + ++ + DTAGMRK +I ES E+ +V ++M+++ + +++L+A +Q Sbjct: 215 THFTSESGQEFTMIDTAGMRKKGKIYESTEKYSVMRAMRAIERSDVVLMVLNAEEGIREQ 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D RI G +++ +NKWD + + N ++D + + I +S T + Sbjct: 275 DKRIAGYAHEAGRGIIIVVNKWDTLKKETNTMRDFEEEIRDEFQYLDYAPIIFVSAVTKQ 334 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 L+ L + E++ RI ++ LN + NP PT + ++ Y TQ+ PP+ Sbjct: 335 RLNKLPQLIEEVSMNQNMRIPSALLNDVIMDAVAINPTPTDKGKRLKIFYATQVAVKPPT 394 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 F+IF + SY R+L N++R F+ G PIR+ Sbjct: 395 FVIFVNEEELMHFSYARFLENQIRKAFTFEGTPIRII 431 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 48/162 (29%), Positives = 80/162 (49%), Gaps = 22/162 (13%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAII-NGVIFNIVDTAGI 60 I +++G PNVGKS+L N ++ ++ +V + G TRD + +G F ++DTAG+ Sbjct: 174 IIKFSLIGRPNVGKSSLINAILGEERVIVSDIEGTTRDAIDTHFTSESGQEFTMIDTAGM 233 Query: 61 -ADGK------NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIP 113 GK S+ + M AI + ++L +++++ GI D I + + Sbjct: 234 RKKGKIYESTEKYSVMRAMR-----AIERSDVVLMVLNAEEGIREQDKRIAGYAHEAGRG 288 Query: 114 IIIVSNKMDTRIAQ----RNFY-----EIYSLDFKEIVEISA 146 IIIV NK DT + R+F E LD+ I+ +SA Sbjct: 289 IIIVVNKWDTLKKETNTMRDFEEEIRDEFQYLDYAPIIFVSA 330 >gi|297584434|ref|YP_003700214.1| ribosome-associated GTPase EngA [Bacillus selenitireducens MLS10] gi|297142891|gb|ADH99648.1| ribosome-associated GTPase EngA [Bacillus selenitireducens MLS10] Length = 446 Score = 244 bits (623), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 145/455 (31%), Positives = 231/455 (50%), Gaps = 30/455 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNR+V +++++V + PG+TRDR+Y A F I+DT GI + Sbjct: 14 LAIVGRPNVGKSTLFNRVVGERISIVEDKPGVTRDRIYSSAEWLTHEFFIIDTGGI-EIS 72 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + +QM Q ELAI+EA +I F+++ + G+T D + L + PI++ NK+D Sbjct: 73 DEPLLEQMRYQAELAIDEADVICFVVNGRDGMTAADEEVAQILHRSKKPIVLAVNKIDDP 132 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 YE YSL + +S H LG +L F Q N+ ++ Sbjct: 133 SMFERLYEFYSLGVGDPHPVSGTHGLGLGDLLDTAAASFPQ------------NQGDDYH 180 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P +R++++GRPNVGKS+++N +LG R++ +G TRD++ Sbjct: 181 P----------------DTVRMSLIGRPNVGKSSMVNAILGEERVIVSDIAGTTRDAIDT 224 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 S+ + DTAGMRK ++ E+ E+ +V ++++++ + +V+LD +QD Sbjct: 225 SFTKDGKDYVVIDTAGMRKRGKVYETTEKYSVLRALKAIERSDVVLVVLDGEEGIIEQDK 284 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 +I G A+V+ +NKWD V +Q K + I +S T + Sbjct: 285 KIAGYAHEAGRAIVIVVNKWDAVEKDDKTMQKFEEKIRHEFVFLDYAPIVYVSALTKRRM 344 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYN-RLKYITQIQSSPPSF 423 L+ V E+++ R+ T LN + NP PT R+ Y TQ+ PP+F Sbjct: 345 QTLLPVVNEVSESHNMRVQTHVLNDVIVDAVTMNPTPTDHGGERLRINYATQVSVQPPTF 404 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 ++F P + SY+RYL NRLR F G PI + Sbjct: 405 VLFVNDPELLHFSYRRYLENRLREAFGFIGTPIHI 439 >gi|315651881|ref|ZP_07904884.1| ribosome-associated GTPase EngA [Eubacterium saburreum DSM 3986] gi|315485883|gb|EFU76262.1| ribosome-associated GTPase EngA [Eubacterium saburreum DSM 3986] Length = 443 Score = 244 bits (623), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 150/467 (32%), Positives = 251/467 (53%), Gaps = 40/467 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKSTLFN + + +++V + PG+TRDR+Y + F ++DT GI Sbjct: 6 VAIIGRPNVGKSTLFNAIAGEPISIVKDTPGVTRDRIYADCTWLDMNFTLIDTGGIEPES 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + I QM +Q E+AI A +I+F+ D + G+ D + LRK P+++ NK+D+ Sbjct: 66 SDVILSQMREQAEIAIETADVIVFITDVRQGLVDSDSKVCDMLRKSRKPVVLAVNKVDS- 124 Query: 125 IAQ--RNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 IA+ + YE Y+L + V ISA LG +L + FK Sbjct: 125 IAKFGNDVYEFYNLGIGDPVAISAASRLGIGDLLDAVAVHFK------------------ 166 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 S+G S ++ +P RIA+VG+PNVGKS++INRL G NR++ +G TRD++ Sbjct: 167 --------SKGNESEEDDDRP-RIAIVGKPNVGKSSIINRLTGQNRVIVSDIAGTTRDAI 217 Query: 243 -SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 ++ N K I I DTAG+R+ S++ E +E+ ++ +++ +V + I+++DA+ + Sbjct: 218 DTVVVNNKQEYIFI-DTAGLRRKSKVKEDIERYSIIRTVTAVERADVVILVIDASEGVTE 276 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVSDK----LNLLQDLRTKAIKNLPQIGDIYINTIS 357 QD +I + G +++A+NKWD++ D++ + + +P I+I+ +S Sbjct: 277 QDAKIAGIAHDRGKGIIVAVNKWDLIEKNNKTVYEYTNDIK-RVLSFMPYAEFIFISALS 335 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 G+ + L +L+ V E L RI T LN + + + PP+ + ++ Y TQ+ Sbjct: 336 GQRLQKLFELIDIVRENQTL---RIQTGVLNEIISEATVMQQPPSDKGKRLKIFYATQVA 392 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 PP+F+IF + SY+RYL N++R F G IR + K Sbjct: 393 VKPPTFVIFVNIKQLMHFSYQRYLENKIREAFGFKGTSIRFIIRERK 439 >gi|330752592|emb|CBL87538.1| GTP-binding protein [uncultured Flavobacteria bacterium] Length = 447 Score = 244 bits (623), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 143/457 (31%), Positives = 239/457 (52%), Gaps = 29/457 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST FNR+V+K+ A+V + G+TRDR YG++ NG F ++DT G + Sbjct: 18 VAIVGRPNVGKSTFFNRMVQKRDAIVDSQSGVTRDRHYGKSDWNGRGFTLIDTGGYLENS 77 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 K+++ Q LA+ EA I+F++D G+T D I LR+ + PI + NK+D Sbjct: 78 EDVFQKEIDKQVSLAVEEADAIIFIVDVIDGVTGMDQNIAKLLRRSSKPIYLAINKVDNT 137 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + E YSL +K IS+ GT EL + + P+ E K +E Sbjct: 138 SRTQMTSEFYSLGYKNFYCISSVSGSGTGELLDDLI----SQMPD------EEKKIGDEL 187 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P AVVGRPN GKS+ IN ++G R + +G TRDS++ Sbjct: 188 PN-------------------FAVVGRPNAGKSSFINAIIGKERNIVTKIAGTTRDSINS 228 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + DTAG+RK ++I E +E ++ +S++S+ + I+++DAT F+ Q Sbjct: 229 RYKRFGFDFNLIDTAGIRKKTKIKEDIEFYSIMRSVRSIEYADVCILIVDATRGFDGQVQ 288 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 I +V+ +NKWD+ N ++ + + + D+ I +S T + + Sbjct: 289 NIFWLTHRNNKGIVILVNKWDLFEKSSNATKEYEIQIREAISPFKDVPIVFVSSLTKQRI 348 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 + + +E+ K K +I T LN+ + + PPP+ +Y ++K+ TQ+ ++ P F+ Sbjct: 349 YKAVSTAIEVFKNRKRKIPTKILNNEILPIIEKTPPPSSKGKYIKIKFCTQLPTNYPQFV 408 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 FC P + + Y+R+L N++R F+ G+PI++ F+ Sbjct: 409 FFCNLPQYLKDPYRRFLENKIRNRFNFQGVPIQIFFR 445 >gi|225028014|ref|ZP_03717206.1| hypothetical protein EUBHAL_02283 [Eubacterium hallii DSM 3353] gi|224954728|gb|EEG35937.1| hypothetical protein EUBHAL_02283 [Eubacterium hallii DSM 3353] Length = 445 Score = 244 bits (623), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 139/468 (29%), Positives = 238/468 (50%), Gaps = 40/468 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTLFN L ++++V + PG+TRDR+Y + F ++DT GI Sbjct: 10 VAVVGRPNVGKSTLFNALAGSRISIVEDTPGVTRDRIYAEVSWLDYQFTLIDTGGIEPES 69 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + I +M +Q E AI A +ILFL+D + G+ D + LR+ + P+++V NK+D Sbjct: 70 DDIIISRMREQAETAIMTADVILFLVDVRQGLVDADFKVADMLRRSHRPVVLVVNKVD-- 127 Query: 125 IAQRNF-------YEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 NF YE Y+L + + +SA+ LG ++ + + F+ ++ Sbjct: 128 ----NFDKFMPDVYEFYNLGLGDPIPVSAQGKLGIGDMLDQVVEKFEAP--------VQE 175 Query: 178 NKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGI 237 + ++ PK IAV+G+PN GKS++IN+LLG R++ +G Sbjct: 176 EEEEDDRPK-------------------IAVIGKPNAGKSSIINKLLGEERVIVSPVAGT 216 Query: 238 TRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATI 297 TRD++ + DTAG+R+ S+I E LE+ ++ +++ +V C+ ++++DAT Sbjct: 217 TRDAIDTTVKRNGQEYVFIDTAGLRRKSKIKEELERYSIIRTVTAVERCDVAVLIIDATE 276 Query: 298 PFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTIS 357 +QD +I G +++A+NKWD+V ++ K + L + + +S Sbjct: 277 GITEQDAKIAGIAHERGKGMIIAVNKWDLVEKDNTTMKKFTEKIREKLSYMPYAELIFLS 336 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 +TG+ L L + + + R+ T LN L + PP+ + R+ YITQ+ Sbjct: 337 AKTGQRLPKLFEMIDAVIENCALRVQTGVLNEILTEAMAMKQPPSDKGKRLRIYYITQVS 396 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 PP+F++F SY RY+ N++R F G PI ++ K Sbjct: 397 VKPPTFVMFINEKKLTHFSYTRYIENQIRTTFGFRGTPIHFIYRERKE 444 >gi|50954356|ref|YP_061644.1| GTP-binding protein EngA [Leifsonia xyli subsp. xyli str. CTCB07] gi|71648669|sp|Q6AGF6|DER_LEIXX RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|50950838|gb|AAT88539.1| GTP-binding protein [Leifsonia xyli subsp. xyli str. CTCB07] Length = 481 Score = 244 bits (623), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 146/455 (32%), Positives = 238/455 (52%), Gaps = 37/455 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI---A 61 +AIVG PNVGKS L NR++ ++ AVV + PG+TRDR+ +A NG F +VDT G A Sbjct: 49 LAIVGRPNVGKSALVNRILGRREAVVEDTPGVTRDRVSYRAEWNGRRFTVVDTGGWEPDA 108 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 G + S+A Q E+AI+ A ++F++D+ G T D + LRK + P+ + +NK+ Sbjct: 109 RGIDASVAA----QAEVAIDLADAVMFVVDAMVGATSTDEHVVRLLRKSDKPVFLAANKV 164 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D + + E++SL E +SA H G ++L I K Sbjct: 165 DDARQEPSATELWSLGLGEPHPVSALHGRGVADLLDKILKALP----------------- 207 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 ++++ K + + P R+A++GRPNVGKS+L+N+ G R++ +G TRD Sbjct: 208 ------DVSAVAK---QEVGGPRRVAILGRPNVGKSSLLNKAAGEERVVVNELAGTTRDP 258 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 V DTAG+R+ + + + ++ ++ E +V+LD + P + Sbjct: 259 VDEQVELGGRVWRFVDTAGIRRRVHLQQGADFYASLRTSTALEKAEVAVVVLDVSQPISE 318 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTG 361 QD+RI+D V +G A+VLA NKWD++ D+ + L + ++L + IS RTG Sbjct: 319 QDVRIIDLVLESGRALVLAFNKWDLLDDERR--RYLEREIEQDLAHVSWAPRVNISARTG 376 Query: 362 EGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 L+ L+ ++ + W+TRI T N++L + +P P + R+ + TQ S PP Sbjct: 377 RHLEKLVPALERALESWETRIPTGKFNAFLAELTSAHPHPVRGGKQPRILFGTQSTSRPP 436 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 +F++F T + Y+RY+I RLR + G PI Sbjct: 437 TFVVFTT--GFLDPGYRRYVIRRLREVYGFEGTPI 469 >gi|225010004|ref|ZP_03700476.1| small GTP-binding protein [Flavobacteria bacterium MS024-3C] gi|225005483|gb|EEG43433.1| small GTP-binding protein [Flavobacteria bacterium MS024-3C] Length = 436 Score = 244 bits (623), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 148/461 (32%), Positives = 239/461 (51%), Gaps = 37/461 (8%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +AIVG PNVGKST FNRL++++ A+V G+TRDR YG++ NG F+++DT G Sbjct: 1 MSAIVAIVGRPNVGKSTFFNRLIQRREAIVDAVSGVTRDRHYGKSDWNGREFSVIDTGGY 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 G + K+++ Q ELAI+EA I+F++D + GIT D + LR+ P+++ NK Sbjct: 61 VLGSDDVFEKEIDKQVELAIDEADAIIFMVDVETGITGMDEDVAKLLRRVKKPVLLAVNK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D E Y+L + I++ GT EL + L K Sbjct: 121 VDNARRIEESVEFYNLGLGDFFTIASISGSGTGELLDALV---------LALPEEVEQKE 171 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 E P R AVVGRPN GKS+ IN L+G +R + +G TRD Sbjct: 172 EEVLP-------------------RFAVVGRPNAGKSSFINALIGEDRYIVTDIAGTTRD 212 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ +N + DTAG+R+ +++ E LE +V +S++++ + I++LDAT F+ Sbjct: 213 SIDTRYNRFGFEFNLVDTAGIRRKAKVREDLEFYSVMRSVRAIEHSDVCILILDATRGFD 272 Query: 301 KQDLRIVDSVF----NTGHAVVLALNKWDMVSDK-LNLLQDLRTKAIKNLPQIGDIYINT 355 Q V+++F +V+ +NKWD+V DK N ++ + + + D+ I Sbjct: 273 GQ----VENIFWLAQRNNKGIVILVNKWDLVEDKETNTVKAYTQRIQEAISPFVDVPIIF 328 Query: 356 ISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQ 415 +S T + + + + +E+ + +I T N ++ PPP +Y ++K+ TQ Sbjct: 329 MSVVTKQRIFKAIETAVEVYENRSRKIPTRKFNEFMLPLIEHYPPPAYKGKYVKIKFCTQ 388 Query: 416 IQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 + + P F FC P + E YKRYL N++R ++S SG+PI Sbjct: 389 LPTPYPQFAFFCNLPQYVREPYKRYLENKIREHYSFSGVPI 429 >gi|284048574|ref|YP_003398913.1| ribosome-associated GTPase EngA [Acidaminococcus fermentans DSM 20731] gi|283952795|gb|ADB47598.1| ribosome-associated GTPase EngA [Acidaminococcus fermentans DSM 20731] Length = 443 Score = 244 bits (623), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 144/456 (31%), Positives = 236/456 (51%), Gaps = 34/456 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFN ++++V + PG+TRDRLY A F +VDT GI Sbjct: 6 VAIVGRPNVGKSTLFNIFADSRISIVEDTPGVTRDRLYADAEWLDRKFTMVDTGGIEMQN 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 SIA + Q E+A+ EA +ILF+ D++ GIT D + LR+ P+++ NK DT Sbjct: 66 TDSIAVSIRQQAEVAVREADVILFVCDARTGITNDDMEVAKMLRQSRKPVVLAVNKADTP 125 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + YE Y+L E ISA + L +L + + F Sbjct: 126 KQEAEAYEFYNLGIGEPYLISASNRLNLGDLLDAVVEKF--------------------- 164 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P+E + V +++A++GRPNVGKS++ N ++G R + +G TRD++ + Sbjct: 165 PEEGDEDDDSEDV------IKVAIIGRPNVGKSSIFNDIIGQTRSIVSDVAGTTRDAIDV 218 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 DTAGMR+ +I E +E+ ++ +++++V + +++L+A +QD Sbjct: 219 PVEKDGQTYLFIDTAGMRRKGKIDEPIEKYSIIRTLRAVDRSDVVLLVLNAVEGITEQDK 278 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKN----LPQIGDIYINTISGRT 360 +I G +V+ +NKWD+ +K + + TK I++ +P +Y++ ++ + Sbjct: 279 KIAGYAHEAGKGIVIVVNKWDLYPNKTVMSTEEFTKQIRHELIFMPYANVVYVSALTQQR 338 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 L +++ E N + RI+TS LN + N PP + ++ Y TQ++ P Sbjct: 339 ISRLPEMIKDAAEANAM---RISTSVLNQVVTDAVAMNQPPMEKGKRLKILYTTQVKVKP 395 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 P+F+IFC P + SY+RYL N+LR F G PI Sbjct: 396 PTFVIFCNEPEIMHFSYQRYLENQLREAFGFKGTPI 431 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/123 (31%), Positives = 69/123 (56%), Gaps = 2/123 (1%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI- 60 + +AI+G PNVGKS++FN ++ + ++V + G TRD + +G + +DTAG+ Sbjct: 177 VIKVAIIGRPNVGKSSIFNDIIGQTRSIVSDVAGTTRDAIDVPVEKDGQTYLFIDTAGMR 236 Query: 61 ADGK-NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 GK + I K +T A++ + ++L ++++ GIT D I + + I+IV N Sbjct: 237 RKGKIDEPIEKYSIIRTLRAVDRSDVVLLVLNAVEGITEQDKKIAGYAHEAGKGIVIVVN 296 Query: 120 KMD 122 K D Sbjct: 297 KWD 299 >gi|210612261|ref|ZP_03289209.1| hypothetical protein CLONEX_01409 [Clostridium nexile DSM 1787] gi|210151635|gb|EEA82642.1| hypothetical protein CLONEX_01409 [Clostridium nexile DSM 1787] Length = 442 Score = 244 bits (623), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 141/464 (30%), Positives = 239/464 (51%), Gaps = 33/464 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFN L + +++V + PG+TRDR+Y + F ++DT GI Sbjct: 6 VAIVGRPNVGKSTLFNALAGEMISIVKDTPGVTRDRIYAEVTWLDKEFTMIDTGGIEPDS 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 I QM +Q ++AI+ A +I+F+ D + G+ D + LR+ P+++V NK+D+ Sbjct: 66 KDIILSQMREQAQIAIDTADVIVFITDVRQGLVDADSKVADMLRRSGKPVVLVVNKVDSF 125 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + YE Y+L + + ISA LG ++ + K F Sbjct: 126 QKLMPDVYEFYNLGIGDPIPISAASRLGIGDMLDEVVKFF-------------------- 165 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 P+ N T E +P RIA+VG+PNVGKS+++N+LLG NR++ +G TRD++ Sbjct: 166 -PERNATEEEDE------RP-RIAIVGKPNVGKSSIVNKLLGENRVIVSDVAGTTRDAID 217 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + + DTAG+R+ ++I E LE+ ++ +++ +V + ++++DA +QD Sbjct: 218 TAIKYHGKEYVFIDTAGLRRKNKIKEELERYSIIRTVTAVERADVVLMVIDAVEGITEQD 277 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 +I G +++ +NKWD + + + K + L + I +S TG+ Sbjct: 278 AKIAGIAHERGKGIIIVVNKWDAIEKHDKTMYEYEKKIRQTLAYMPYAEIMYVSAATGQR 337 Query: 364 LDDL--MVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 L+ L M+ V+ N+ R+ T LN + + PP+ + +L YITQ+ PP Sbjct: 338 LNKLYEMIDVVMENQTL--RVATGVLNEIMAEAVAMQQPPSDKGKRLKLYYITQVAVKPP 395 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 +F+IF + SY RYL N++R F G ++ + K Sbjct: 396 TFVIFVNDKELMHFSYTRYLENKIREAFGFKGTSLKFFIRERKE 439 >gi|53715371|ref|YP_101363.1| GTP-binding protein EngA [Bacteroides fragilis YCH46] gi|60683339|ref|YP_213483.1| GTP-binding protein EngA [Bacteroides fragilis NCTC 9343] gi|255011702|ref|ZP_05283828.1| GTP-binding protein EngA [Bacteroides fragilis 3_1_12] gi|265767858|ref|ZP_06095390.1| ribosome-associated GTPase EngA [Bacteroides sp. 2_1_16] gi|313149536|ref|ZP_07811729.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|81313609|sp|Q5L8K8|DER_BACFN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|81824906|sp|Q64NV3|DER_BACFR RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|52218236|dbj|BAD50829.1| putative phosphoglycerate dehydrogenase [Bacteroides fragilis YCH46] gi|60494773|emb|CAH09579.1| putative GTP-binding protein [Bacteroides fragilis NCTC 9343] gi|263252530|gb|EEZ24058.1| ribosome-associated GTPase EngA [Bacteroides sp. 2_1_16] gi|301164828|emb|CBW24388.1| putative GTP-binding protein [Bacteroides fragilis 638R] gi|313138303|gb|EFR55663.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 437 Score = 244 bits (623), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 149/454 (32%), Positives = 239/454 (52%), Gaps = 30/454 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNRL K + A+V + G TRDR YG++ G F++VDT G Sbjct: 5 VAIVGRPNVGKSTLFNRLTKTRQAIVNDEAGTTRDRQYGKSEWLGREFSVVDTGGWVVNS 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +++ Q +A++EA +ILF++D G+T D + + LR+ P+I+V+NK D Sbjct: 65 DDIFEEEIRKQVLMAVDEADVILFVVDVTNGVTDLDMQVAAILRRAKSPVIMVANKTDNH 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + N E Y L + ISA GT +L +I FK K ++E Sbjct: 125 ELRYNAPEFYRLGLGDPYCISAISGSGTGDLMDLIVSKFK--------------KESDEI 170 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 E+I R AVVGRPN GKS+++N +G R + +G TRDS+ Sbjct: 171 LDEDIP--------------RFAVVGRPNAGKSSIVNAFIGEERNIVTEIAGTTRDSIYT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 +N + DTAG+RK +++ E LE +V +S++++ + I+++DAT E QDL Sbjct: 217 RYNKFGFDFYLVDTAGIRKKNKVNEDLEYYSVVRSIRAIEGADVCILMVDATRGIESQDL 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKN-LPQIGDIYINTISGRTGEG 363 I + +V+ +NKWD+V +K + + +AI++ D I S T + Sbjct: 277 NIFSLIQKNSKGLVVVVNKWDLVENKTDKVMKTFEEAIRSRFAPFVDFPIVFASALTKQR 336 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP-PS 422 + ++ ++ + +I T+ LN + PPP +Y ++KY+TQ+ ++ PS Sbjct: 337 ILKVLEEARKVYENRMIKIPTARLNEEMLPLIEAYPPPATKGKYIKIKYVTQLPNTQVPS 396 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 F+ F P + E Y+R+L N++R + LSG PI Sbjct: 397 FVFFANLPQYVKEPYRRFLENKMREKWDLSGTPI 430 >gi|253567260|ref|ZP_04844710.1| GTP-binding protein engA [Bacteroides sp. 3_2_5] gi|251944091|gb|EES84610.1| GTP-binding protein engA [Bacteroides sp. 3_2_5] Length = 437 Score = 244 bits (623), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 152/457 (33%), Positives = 242/457 (52%), Gaps = 36/457 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNRL K + A+V + G TRDR YG++ G F++VDT G Sbjct: 5 VAIVGRPNVGKSTLFNRLTKTRQAIVNDEAGTTRDRQYGKSEWLGREFSVVDTGGWVVNS 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +++ Q +A++EA +ILF++D G+T D + + LR+ P+I+V+NK D Sbjct: 65 DDIFEEEIRKQVLMAVDEADVILFVVDVTNGVTDLDMQVAAILRRAKSPVIMVANKTDNH 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + N E Y L + ISA GT +L +I FK K ++E Sbjct: 125 ELRYNAPEFYRLGLGDPYCISAISGSGTGDLMDLIVSKFK--------------KESDEI 170 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 E+I R AVVGRPN GKS+++N +G R + +G TRDS+ Sbjct: 171 LDEDIP--------------RFAVVGRPNAGKSSIVNAFIGEERNIVTEIAGTTRDSIYT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 +N + DTAG+RK +++ E LE +V +S++++ + I+++DAT E QDL Sbjct: 217 RYNKFGFDFYLVDTAGIRKKNKVNEDLEYYSVVRSIRAIEGADVCILMVDATRGIESQDL 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKN-LPQIGDIYINTISGRTGEG 363 I + +V+ +NKWD+V +K + + +AI++ D I S T + Sbjct: 277 NIFSLIQKNSKGLVVVVNKWDLVENKTDKVMKTFEEAIRSRFAPFVDFPIVFASALTKQ- 335 Query: 364 LDDLMVSVLEINKLWKTR---ITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 ++ + E +K+++ R I T+ LN + PPP +Y ++KY+TQ+ ++ Sbjct: 336 --RILKVLEEAHKVYENRMIKIPTARLNEEMLPLIEAYPPPATKGKYIKIKYVTQLPNTQ 393 Query: 421 -PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 PSF+ F P + E Y+R+L N++R + LSG PI Sbjct: 394 VPSFVFFANLPQYVKEPYRRFLENKMREKWDLSGTPI 430 >gi|114332129|ref|YP_748351.1| GTP-binding protein EngA [Nitrosomonas eutropha C91] gi|122313190|sp|Q0AE46|DER_NITEC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|114309143|gb|ABI60386.1| small GTP-binding protein [Nitrosomonas eutropha C91] Length = 468 Score = 244 bits (623), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 156/473 (32%), Positives = 229/473 (48%), Gaps = 39/473 (8%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+ +VG PNVGKSTLFNRL + + A+V + PG+TRDR YG + + +VDT G Sbjct: 4 TLVLVGRPNVGKSTLFNRLTRSRDAIVADIPGLTRDRHYGHGRLGLKPYLVVDTGGFEPV 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 I M QT A++EA ++LF++D + G+ D I LRK II+V NK + Sbjct: 64 VKSGILHAMARQTLQAVDEADVVLFIVDGRQGLASQDKIIADQLRKTGRKIILVVNKAEG 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 E + L +SA H EL + F + + YP E IE E+ Sbjct: 124 MPYSTAAVEFHELGLGTPCVVSALHGEHLGEL--IDFAL--EDYPY--AEDIEAEPGQEK 177 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 P IA+ GRPNVGKSTLIN LLG R++ Q G TRDS+ Sbjct: 178 HPV-------------------IAIAGRPNVGKSTLINTLLGEERMIAFDQPGTTRDSIY 218 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 I + + + DTAG+R+ ++ E++E+ +V K++QS+ +++LDA +QD Sbjct: 219 IDFEYGQRRYTLIDTAGLRRSGKVWETVEKFSVVKTLQSIEAANVVVLVLDAQSGISEQD 278 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSD------KLNLLQDLRTKAIKNLPQIGDIYINTIS 357 I + TG A+V+A+NKWD + D K + L NL I +Y Sbjct: 279 AHIAGFILETGRALVIAINKWDGMDDYQRDTTKREFERKLAFLNFANLHYISALY----- 333 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 G G+ LM SV I T L + + PP +L+Y Q Sbjct: 334 ---GNGVKALMPSVDAAYTAAMAHIPTPKLTRVMLAAVAKQQPPRGGVSRPKLRYAHQGG 390 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP ++ + + +P++Y+RYL N R F L G P+R+ F++ NPY K Sbjct: 391 ENPPLIIVHGSMLDHVPQTYRRYLENTFRDVFELKGTPLRVEFRTGHNPYAGK 443 >gi|145219270|ref|YP_001129979.1| GTP-binding protein EngA [Prosthecochloris vibrioformis DSM 265] gi|189037154|sp|A4SDB8|DER_PROVI RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|145205434|gb|ABP36477.1| small GTP-binding protein [Chlorobium phaeovibrioides DSM 265] Length = 436 Score = 244 bits (623), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 149/461 (32%), Positives = 246/461 (53%), Gaps = 37/461 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTLFNR+++++ A+V + PG+TRDR + G F ++DT G A + Sbjct: 5 IALVGRPNVGKSTLFNRILRERAAIVDSTPGVTRDRHISEGFWQGRAFRLMDTGGYAP-E 63 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKK--NIPIIIVSNKMD 122 + I+ M +QT AIN+A +++F+ D++AG++ D + LR++ + P+ NK++ Sbjct: 64 DGVISNAMLEQTMTAINDADIVVFVADARAGLSYDDLELAKVLRQRFSHKPVFFAVNKVE 123 Query: 123 TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 + S + E ISA+ G ++L I LEM E++ E Sbjct: 124 SPQLAYEAASFVSTGYTEPWCISAKDGSGVADLLDAIL-----------LEMPESDADQE 172 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 E +R+AVVGRPNVGKS+ +N LLG NR + G TRD++ Sbjct: 173 ED-----------------GAIRLAVVGRPNVGKSSFVNALLGNNRQIVSDIPGTTRDAI 215 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + + DTAG+RK ++I+ +E + +S +++ CE +V++DA EKQ Sbjct: 216 DTRFTRNQQDFLLIDTAGLRKRTKISAGIEYYSSLRSEKAIERCEVVMVMIDAGPGIEKQ 275 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMV---SDKLNLLQDLRTKAIKNLPQIGDIYINTISGR 359 DL+I++ AV+L +NKWD++ S +D + NL + ++I+ + Sbjct: 276 DLKIINMATERKRAVLLLVNKWDLIEKDSKTSKQYEDTLRSHMGNLAYVPVLFISAL--- 332 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 T + L + + EI +I+TS LN +L++ NPP + ++KY+TQIQ++ Sbjct: 333 TKKNLYRAIDTAREIRDNRARKISTSALNRFLEEALAANPPSSKGGTELKIKYMTQIQAA 392 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCF 460 P F FC P + +++++L NRLR F L G+ I + F Sbjct: 393 WPVFAFFCNNPELVQTNFRKFLENRLREKFDLKGVTISLRF 433 >gi|184155357|ref|YP_001843697.1| GTP-binding protein EngA [Lactobacillus fermentum IFO 3956] gi|238692974|sp|B2GC35|DER_LACF3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|183226701|dbj|BAG27217.1| GTP-binding protein [Lactobacillus fermentum IFO 3956] Length = 437 Score = 244 bits (623), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 143/462 (30%), Positives = 242/462 (52%), Gaps = 32/462 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNR+ +++A+V + PG+TRDRLY G F+++DT GI + Sbjct: 6 VAIVGRPNVGKSTLFNRIAGERIAIVEDTPGVTRDRLYAHGEWLGKNFSMIDTGGI-EMS 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + Q+ Q E+AI EA +I+ +++ + G+T D + L + N P+++ NK+D Sbjct: 65 DQPLLTQIRQQAEIAIEEADVIIMVVNVENGVTDADEQVAQILYRSNKPVVLAVNKVDNP 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + Y+ Y L E +S+ H +G ++ + + F +K + E + R Sbjct: 125 ERRLDVYDFYRLGLGEPYPVSSVHGVGLGDMLDAVIENFAEK------DAEEEDDR---- 174 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 +R + +GRPNVGKS+L+N +LG NR++ +G TRD+++ Sbjct: 175 -------------------IRFSFIGRPNVGKSSLVNAILGENRVIVSDMAGTTRDAINT 215 Query: 245 SWNWKN-HPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + K+ + DTAG++K ++ E+ E+ + +SM+++ + +V+L+A + D Sbjct: 216 QFTAKDGREFTMVDTAGIKKKGKLYENTERYALMRSMRAIDDSDVVLVVLNAEEGIRELD 275 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQ-IGDIYINTISGRTGE 362 I G AV++ +NKWD + D+ T I++ Q + I +S +T + Sbjct: 276 KHIAGYAHEAGRAVIIVVNKWDTIPDRDQRTMTDFTNLIRHEFQYLSYAPIVFVSAKTKQ 335 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 L L + E RI ++ LN L NP P+ R R+ Y TQ+ +PP+ Sbjct: 336 RLSRLPEMIEEAYDHQHRRIQSAVLNDVLMDALAANPTPSSNGRRLRVYYATQVAVAPPT 395 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 F+IF P+ + SY RYL NR+R F +G PIR+ + K Sbjct: 396 FVIFVNDPDLMHFSYARYLENRIRAAFDFTGTPIRLIKRRRK 437 >gi|325571137|ref|ZP_08146709.1| ribosome-associated GTPase EngA [Enterococcus casseliflavus ATCC 12755] gi|325156222|gb|EGC68408.1| ribosome-associated GTPase EngA [Enterococcus casseliflavus ATCC 12755] Length = 436 Score = 244 bits (623), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 141/457 (30%), Positives = 237/457 (51%), Gaps = 31/457 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAIVG PNVGKST+FNR+ +++++V + PG+TRDR+Y G F+++DT GI D Sbjct: 5 TIAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYATGEWLGREFSVIDTGGI-DL 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + Q+ Q E+AI+EA +I+F+ ++ G+T D + L K N P+I+ NK+D Sbjct: 64 SDEPFMDQIKHQAEIAIDEADVIVFITSAREGVTDADELVARLLYKSNKPVILAVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + YE Y L + IS H LG ++ K F Sbjct: 124 PEMRNDIYEFYGLGLGDPYPISGSHGLGIGDVLDEAVKHF-------------------- 163 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 T+E + +I ++ +++GRPNVGKS+LIN +LG R++ G TRD++ Sbjct: 164 ------TNEAEEEDDSI---IKFSLIGRPNVGKSSLINAILGEERVIVSDIEGTTRDAID 214 Query: 244 ISWNWKN-HPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + ++ + DTAGMRK ++ ES E+ +V ++M+++ + +++L+A +Q Sbjct: 215 THFTSESGQEFTMIDTAGMRKKGKVYESTEKYSVMRAMRAIERSDVVLMVLNAEEGIREQ 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D RI G +++ +NKWD + + N ++D + + I +S T + Sbjct: 275 DKRIAGYAHEAGRGIIIVVNKWDTLKKETNTMRDFEEEIRDEFQYLDYAPIIFVSAVTKQ 334 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 L+ L + E++ RI ++ LN + NP PT + ++ Y TQ+ PP+ Sbjct: 335 RLNKLPQLIEEVSMNQNMRIPSALLNDVIMDAVAINPTPTDKGKRLKIFYATQVAVKPPT 394 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 F+IF + SY R+L N++R F+ G PIR+ Sbjct: 395 FVIFVNEEELMHFSYARFLENQIRKAFTFEGTPIRII 431 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 48/162 (29%), Positives = 80/162 (49%), Gaps = 22/162 (13%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAII-NGVIFNIVDTAGI 60 I +++G PNVGKS+L N ++ ++ +V + G TRD + +G F ++DTAG+ Sbjct: 174 IIKFSLIGRPNVGKSSLINAILGEERVIVSDIEGTTRDAIDTHFTSESGQEFTMIDTAGM 233 Query: 61 -ADGK------NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIP 113 GK S+ + M AI + ++L +++++ GI D I + + Sbjct: 234 RKKGKVYESTEKYSVMRAMR-----AIERSDVVLMVLNAEEGIREQDKRIAGYAHEAGRG 288 Query: 114 IIIVSNKMDTRIAQ----RNFY-----EIYSLDFKEIVEISA 146 IIIV NK DT + R+F E LD+ I+ +SA Sbjct: 289 IIIVVNKWDTLKKETNTMRDFEEEIRDEFQYLDYAPIIFVSA 330 >gi|238855193|ref|ZP_04645512.1| ribosome-associated GTPase EngA [Lactobacillus jensenii 269-3] gi|260664556|ref|ZP_05865408.1| ribosome-associated GTPase EngA [Lactobacillus jensenii SJ-7A-US] gi|282932513|ref|ZP_06337938.1| ribosome-associated GTPase EngA [Lactobacillus jensenii 208-1] gi|313471978|ref|ZP_07812470.1| ribosome-associated GTPase EngA [Lactobacillus jensenii 1153] gi|238832085|gb|EEQ24403.1| ribosome-associated GTPase EngA [Lactobacillus jensenii 269-3] gi|239529090|gb|EEQ68091.1| ribosome-associated GTPase EngA [Lactobacillus jensenii 1153] gi|260561621|gb|EEX27593.1| ribosome-associated GTPase EngA [Lactobacillus jensenii SJ-7A-US] gi|281303462|gb|EFA95639.1| ribosome-associated GTPase EngA [Lactobacillus jensenii 208-1] Length = 436 Score = 244 bits (622), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 144/463 (31%), Positives = 246/463 (53%), Gaps = 33/463 (7%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AIVG PNVGKSTLFNR++ +++A+V + PG+TRDR Y +A G FNI+DT GI Sbjct: 5 TVAIVGQPNVGKSTLFNRIINERLAIVEDRPGVTRDRNYAKASWLGHEFNIIDTGGIT-W 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + I ++ Q ++A+ EA +I+ + +T D I L + + P+++ NK D Sbjct: 64 EGGRIEDEIRAQADIAMEEADVIVMITSVALHLTDLDERIARILYRSSKPVLLAVNKADN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + Y+ YSL + + IS+ H G +L I + F E + ++E+ Sbjct: 124 PEQRADIYDFYSLGLGDPIPISSTHGTGIGDLLDAIVENFPP----------EADTKDED 173 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 + +V+GRPNVGKS++IN +LG R++ ++ G TRD+V Sbjct: 174 E-------------------IAFSVIGRPNVGKSSIINAMLGQKRVIVANEEGTTRDAVD 214 Query: 244 ISWNWKNH-PIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + ++ + DTAG+R+ ++ E E+ +V ++ +++ + ++LDA+ +Q Sbjct: 215 TPFVAEDGTKFRMIDTAGIRRRGKVYEKTEKYSVLRAQAAIQRSDVVCLVLDASTGIREQ 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIY-INTISGRTG 361 D + + G +++ +NKWD+ N +D T+ I+ Q D I +S +TG Sbjct: 275 DKHVAGFAHDAGRGMLIVVNKWDLPKKDSNSAKDF-TRVIREEFQYLDYAPIVFVSAKTG 333 Query: 362 EGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 + L+ L + E+ + RI +S LN L + P P I + R+ Y+TQ+ PP Sbjct: 334 KNLEQLPDLIKEVAENQSQRIQSSVLNDMLIEASKLVPSPLIKGKRLRVYYMTQVAVQPP 393 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 +F++F P + SYKR+LIN+LR NF +G PI++ + K Sbjct: 394 TFVVFVNDPELMHFSYKRFLINQLRDNFDFTGTPIKILPRKRK 436 >gi|302345898|ref|YP_003814251.1| ribosome-associated GTPase EngA [Prevotella melaninogenica ATCC 25845] gi|302149910|gb|ADK96172.1| ribosome-associated GTPase EngA [Prevotella melaninogenica ATCC 25845] Length = 437 Score = 244 bits (622), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 150/458 (32%), Positives = 242/458 (52%), Gaps = 30/458 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +AIVG PNVGKSTLFNRL + + A+V + G TRDR YG+ NG F+IVDT G Sbjct: 1 MANLVAIVGRPNVGKSTLFNRLTQTRHAIVSDTAGTTRDRQYGKCQWNGREFSIVDTGGW 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + + Q +A EA L+LF++D++ GIT +D + LR+ +P+++V+NK Sbjct: 61 VVKSDDIFEDAIRKQVLVATEEADLVLFVVDTETGITDWDEDVALILRRTKLPVLLVANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D E Y L E + ISA GT +L + ++EN K Sbjct: 121 VDNSGEYYQAAEFYKLGLGEPICISAATGGGTGDLLDI---------------LLENLK- 164 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 + P+E + + R AVVGRPN GKS++IN +G +R + +G TRD Sbjct: 165 --DVPEEAVDQDIP----------RFAVVGRPNAGKSSIINAFIGEDRNIVTEIAGTTRD 212 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ + + DTAG+R+ ++++E LE +V +S++S+ + I++LDAT E Sbjct: 213 SIYTRYTKFGFDFYLVDTAGIRRKNKVSEDLEFYSVMRSIRSIENSDVCILMLDATRGIE 272 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAI-KNLPQIGDIYINTISGR 359 QD+ I + ++V+ +NKWD+V DK + D AI K + D I S Sbjct: 273 AQDMNIFQLIQRNNKSLVVVVNKWDLVEDKNQKVIDTFENAIRKRMAPFVDFPIIFASAL 332 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 T + + ++ + E+ + I T+ LN + PP ++ +Y ++KY +Q+ ++ Sbjct: 333 TKQRIFKVLETAKEVYQNRTMHIGTTKLNEVMLPIIEATPPQSVKGKYIKIKYCSQLPNT 392 Query: 420 P-PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 PSF+ + P + E Y+R+L N++R N++L G PI Sbjct: 393 QIPSFVFYANLPQYVKEQYRRFLENKIRENWNLHGCPI 430 >gi|239636852|ref|ZP_04677851.1| ribosome-associated GTPase EngA [Staphylococcus warneri L37603] gi|239597526|gb|EEQ80024.1| ribosome-associated GTPase EngA [Staphylococcus warneri L37603] Length = 436 Score = 244 bits (622), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 139/455 (30%), Positives = 230/455 (50%), Gaps = 29/455 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST+FNR+V +++++V + PG+TRDR+Y FNI+DT GI G Sbjct: 6 VAIVGKPNVGKSTIFNRVVGERVSIVEDTPGVTRDRIYSSGEWLTHEFNIIDTGGIEIG- 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + Q+ Q E+AI EA +I+F+++ + G+T D + L K P+++ NK+D Sbjct: 65 DAPFQTQIRAQAEIAIEEADVIVFMVNVREGLTQSDEMVAQMLYKSKKPVVLAVNKVDNV 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + Y+ YSL F E IS H LG +L + + F ++ Sbjct: 125 EMRNDIYDFYSLGFGEPYPISGSHGLGLGDLLDAVVENFGEE------------------ 166 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 +R++++GRPNVGKS+L+N +LG R++ + +G TRD+V Sbjct: 167 ----------EEDPYDDDTIRLSIIGRPNVGKSSLVNAILGEERVIVSNVAGTTRDAVDT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 +++ + DTAGMRK ++ ES E+ +V ++++++ +V++DA +QD Sbjct: 217 EYSFDGQDYVLIDTAGMRKKGKVYESTEKYSVLRALKAIERSNVVLVVIDAEQGIIEQDK 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 R+ G A+V+ +NKWD V ++ + I +S + L Sbjct: 277 RVAGYAHEEGKAIVIVVNKWDTVEKDSKTMKKFTEDVRIEFQFLDYAQIAFVSAKEQLRL 336 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 L + E ++ K R+ +S LN + NP PT R + Y TQ+ PP+F+ Sbjct: 337 KTLFPYIKEASENHKKRVQSSTLNEVITDAISMNPTPTDKGRRLNVFYSTQVAIEPPTFV 396 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 +F + SYKRYL N++R F G P+ + Sbjct: 397 VFVNDVELMHFSYKRYLENQIRHAFGFEGTPVHII 431 >gi|302039510|ref|YP_003799832.1| GTP-binding protein EngA [Candidatus Nitrospira defluvii] gi|300607574|emb|CBK43907.1| GTP-binding protein EngA [Candidatus Nitrospira defluvii] Length = 464 Score = 244 bits (622), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 141/457 (30%), Positives = 243/457 (53%), Gaps = 31/457 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA++G PNVGKSTLFNR++ + A+V + PG+TRDR Y + F +VDT G+ Sbjct: 31 IALIGRPNVGKSTLFNRILGTRAAIVDDVPGVTRDRNYADSTYRNRRFRLVDTGGLDPTA 90 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + + Q++LAI EA +++ ++D+++G+TP D + LR + P+ V NK+DT Sbjct: 91 SEGMLSLIRQQSQLAIAEADILVLVLDARSGLTPADEEVVQTLRGSDKPVYYVINKIDTP 150 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 A + Y L +++ +SAEH +G +EL +F +H E ++ Sbjct: 151 KADPLVADFYRLGQEQLYPLSAEHGIGVAELLDDLF--------SHMAEPLD-------- 194 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 E TS+ RIA+VGRPNVGKSTL+N +LG R++ + G TRD V Sbjct: 195 --EEATSDTP----------RIAIVGRPNVGKSTLVNSVLGEARVVVSNVPGTTRDPVDS 242 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 +K+ + DTAG+R+ R+ +E +V +S++++ + ++LLDA +QD Sbjct: 243 VATFKDRQYVLTDTAGIRRRGRVERGIEGYSVARSLRAIGRSDIAVLLLDAEEGVTEQDT 302 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 +I V G A +L +NKWD+ +D ++ + + + P + + IS + L Sbjct: 303 KIAGLVLKQGRACILIVNKWDLKTDDVHAREAYKQDLERRFPFLAWAPVLFISALEQDFL 362 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFN---RYNRLKYITQIQSSPP 421 L + ++ + R+ T LN + Q ++P P + ++ ++TQ+ + PP Sbjct: 363 RGLFALIDQVYFSFCKRVPTGPLNQFFQGLLEEHPLPVRKGKPAKASKSAFMTQVATRPP 422 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 +F +F P+ + +Y R+L N++R + SG PIR+ Sbjct: 423 AFALFVGHPDNMTPAYLRFLENQIRKEYHFSGTPIRL 459 >gi|325981901|ref|YP_004294303.1| ribosome-associated GTPase EngA [Nitrosomonas sp. AL212] gi|325531420|gb|ADZ26141.1| ribosome-associated GTPase EngA [Nitrosomonas sp. AL212] Length = 464 Score = 244 bits (622), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 155/473 (32%), Positives = 238/473 (50%), Gaps = 43/473 (9%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+ +VG PNVGKSTLFNRL + + A+V + PG+TRDR YG + + +VDT G Sbjct: 4 TLVLVGRPNVGKSTLFNRLTRTRDAIVADIPGLTRDRHYGAGRVGDKPYLVVDTGGFEPV 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK--- 120 + M QT AI+EA +LF++D + G+T +D I LRK I++V NK Sbjct: 64 IKEGVLYAMAKQTIQAIDEADKVLFIVDGRQGLTAHDKIIAEQLRKSGQKILLVVNKTEG 123 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 M T + F+E L + +SA H EL + F E++E Sbjct: 124 MTTTVVTAEFFE---LGLGDPCAVSAMHGDNIHELADLALADFP--------EVVE---- 168 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 ++ SK +IA+VGRPNVGKSTLIN LLG R++ Q G TRD Sbjct: 169 -----------------ESASKHPKIAIVGRPNVGKSTLINTLLGEERVIAFDQPGTTRD 211 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ + + K+ + DTAG+R+ ++ E++E+ + K++Q++ +++LDA Sbjct: 212 SIYVDFTHKDKQYTLIDTAGLRRRGQVHETIEKFSAIKTLQAIEDANVVVLILDARNEIS 271 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSD--KLNLLQDLRTK-AIKNLPQIGDIYINTIS 357 QD I + TG A+V+A+NKWD + + + + DL K A + Q ++ IS Sbjct: 272 DQDAHIAGFILETGRALVIAINKWDGLDEYQRATIKSDLSRKLAFLSFAQ-----LHYIS 326 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 G G+ L+ S+ + T L L ++PPP +++Y Q Sbjct: 327 ALHGTGMKKLLPSIDIAYAAAMADLPTPKLTRVLIAAVEKHPPPRGGMSRPKMRYAHQGG 386 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 S+PP ++ + N +PE+Y+RYL N R F L P+R+ F+ NPY K Sbjct: 387 SNPPLIIVHGSMLNHVPETYRRYLENTFRETFKLWSTPLRVDFKIGHNPYADK 439 >gi|257873989|ref|ZP_05653642.1| GTP-binding protein engA [Enterococcus casseliflavus EC10] gi|257808153|gb|EEV36975.1| GTP-binding protein engA [Enterococcus casseliflavus EC10] Length = 436 Score = 244 bits (622), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 141/457 (30%), Positives = 237/457 (51%), Gaps = 31/457 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAIVG PNVGKST+FNR+ +++++V + PG+TRDR+Y G F+++DT GI D Sbjct: 5 TIAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYATGEWLGREFSVIDTGGI-DL 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + Q+ Q E+AI+EA +I+F+ ++ G+T D + L K N P+I+ NK+D Sbjct: 64 SDEPFMDQIKHQAEIAIDEADVIVFITSAREGVTDADELVARLLYKSNKPVILAVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + YE Y L + IS H LG ++ K F Sbjct: 124 PEMRTDIYEFYGLGLGDPYPISGSHGLGIGDVLDEAVKHF-------------------- 163 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 T+E + +I ++ +++GRPNVGKS+LIN +LG R++ G TRD++ Sbjct: 164 ------TNEAEEEDDSI---IKFSLIGRPNVGKSSLINAILGEERVIVSDIEGTTRDAID 214 Query: 244 ISWNWKN-HPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + ++ + DTAGMRK ++ ES E+ +V ++M+++ + +++L+A +Q Sbjct: 215 THFTSESGQEFTMIDTAGMRKKGKVYESTEKYSVMRAMRAIERSDVVLMVLNAEEGIREQ 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D RI G +++ +NKWD + + N ++D + + I +S T + Sbjct: 275 DKRIAGYAHEAGRGIIIVVNKWDTLKKETNTMRDFEEEIRDEFQYLDYAPIIFVSAVTKQ 334 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 L+ L + E++ RI ++ LN + NP PT + ++ Y TQ+ PP+ Sbjct: 335 RLNKLPQLIEEVSMNQNMRIPSALLNDVIMDAVAINPTPTDKGKRLKIFYATQVAVKPPT 394 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 F+IF + SY R+L N++R F+ G PIR+ Sbjct: 395 FVIFVNEEELMHFSYARFLENQIRKAFTFEGTPIRII 431 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 48/162 (29%), Positives = 80/162 (49%), Gaps = 22/162 (13%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAII-NGVIFNIVDTAGI 60 I +++G PNVGKS+L N ++ ++ +V + G TRD + +G F ++DTAG+ Sbjct: 174 IIKFSLIGRPNVGKSSLINAILGEERVIVSDIEGTTRDAIDTHFTSESGQEFTMIDTAGM 233 Query: 61 -ADGK------NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIP 113 GK S+ + M AI + ++L +++++ GI D I + + Sbjct: 234 RKKGKVYESTEKYSVMRAMR-----AIERSDVVLMVLNAEEGIREQDKRIAGYAHEAGRG 288 Query: 114 IIIVSNKMDTRIAQ----RNFY-----EIYSLDFKEIVEISA 146 IIIV NK DT + R+F E LD+ I+ +SA Sbjct: 289 IIIVVNKWDTLKKETNTMRDFEEEIRDEFQYLDYAPIIFVSA 330 >gi|227488997|ref|ZP_03919313.1| GTP-binding protein EngA [Corynebacterium glucuronolyticum ATCC 51867] gi|227091073|gb|EEI26385.1| GTP-binding protein EngA [Corynebacterium glucuronolyticum ATCC 51867] Length = 537 Score = 244 bits (622), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 144/464 (31%), Positives = 245/464 (52%), Gaps = 40/464 (8%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI- 60 + T+AIVG PNVGKS+L NR + ++ AVV + PG+TRDR+ A NG F + DT G Sbjct: 96 LCTVAIVGRPNVGKSSLVNRFLGRREAVVEDTPGVTRDRVSYLAEWNGQRFWVQDTGGWD 155 Query: 61 --ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVS 118 A G + +IA+ Q E+A+ A +I+ ++D+ GIT D + L++ ++P+I+V+ Sbjct: 156 PDAKGIHAAIAR----QAEVAMETADVIVMVVDTNVGITASDEVMARNLQRSDVPVILVA 211 Query: 119 NKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 NK+D+ + E + L +SA+H G +++ I ++F Sbjct: 212 NKVDSPKQEAETAEFWGLGLDYPYPVSAQHGKGGADVLDQILELFP-------------- 257 Query: 179 KRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 + P++ +EG P R+A+VG+PNVGKS+L+N+L R + + +G T Sbjct: 258 ----DEPRQTSITEG---------PRRVALVGKPNVGKSSLLNKLSNEERSVVDNVAGTT 304 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 D V + + DTAG+R+ + E ++ ++ E I+++DA+ P Sbjct: 305 VDPVDSLVQLEGGLWKFIDTAGLRRKVKNASGHEYYASLRTKTAIDAAEVCILIIDASEP 364 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMV-SDKLNLLQDLRTKAIKNLPQIGDIYINTIS 357 +QD +++ + +G A+V+A NKWD+V D+ + L + + ++P I I+ + Sbjct: 365 ISEQDQKLLGMIVESGKALVIAFNKWDLVDEDRRDYLDREIDEQLAHVPWAKRINISAKT 424 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 GR + L+ +M+ LE W R++T LN+WL++ NPPP R R+ + TQ Sbjct: 425 GRALQKLEPVMLEALES---WDQRVSTGQLNNWLRQAIAANPPPMRGGRLPRVLFATQAS 481 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 S PP ++F T + SY+RYL + R F G P+R+ + Sbjct: 482 SQPPVIVLFST--GFLDASYRRYLERKFREQFGFEGTPVRIAVR 523 >gi|227549322|ref|ZP_03979371.1| GTP-binding protein EngA [Corynebacterium lipophiloflavum DSM 44291] gi|227078641|gb|EEI16604.1| GTP-binding protein EngA [Corynebacterium lipophiloflavum DSM 44291] Length = 497 Score = 244 bits (622), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 152/462 (32%), Positives = 242/462 (52%), Gaps = 39/462 (8%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI--- 60 T++IVG PNVGKSTL NR + ++ AVV +HPG+TRDR+ + NG F + DT G Sbjct: 62 TVSIVGRPNVGKSTLVNRFIGRREAVVEDHPGVTRDRVSYISDWNGRRFWVQDTGGWDPD 121 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 A G + +IA Q +E A+ + +I+ ++DS+ GIT D + L++ ++P+I+V+NK Sbjct: 122 ARGLHAAIAHQ----SESAMETSDVIVMVVDSQTGITETDAVMARNLQRADVPVILVANK 177 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 ++ + E YSL + +SA H G +++ I ++F P P Sbjct: 178 FESESQWGDVAEFYSLGLGDPWPVSALHGRGGADVLDEILRLF----PAVP--------- 224 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 ++IT EG P R+A+VGRPNVGKS+L+N+L NR + + +G T D Sbjct: 225 ---RAADSIT-EG---------PRRVAIVGRPNVGKSSLLNKLSRSNRSVVDNVAGTTVD 271 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 V + DTAG+RK + E ++ ++ E +VL+DA+ Sbjct: 272 PVDELIQLDGALWKFIDTAGLRKKVKNARGHEYYASLRTRGTIEAAEVCVVLIDASQEIS 331 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLR-TKAIKNLPQIGDIYINTISGR 359 +QD R++ V G A+V+ NKWD++ + D + + +LP + + IS Sbjct: 332 EQDQRVISMVLEAGKAMVICFNKWDLMDEDRRYYFDREFDEMMGHLPWVTKL---NISAD 388 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 TG GL L ++ E + W RI+T LN+WL++T NPPP NR R+ + T + + Sbjct: 389 TGRGLHRLEAAMTEALENWDKRISTGQLNNWLRETIAANPPPMKNNRLPRVLFTTMVSTR 448 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 PP+ ++F T + Y+RYL + R F G PIR+ + Sbjct: 449 PPTIVLFTT--GFLDAGYRRYLERKFRERFGYHGTPIRVAVR 488 >gi|295094896|emb|CBK83987.1| ribosome-associated GTPase EngA [Coprococcus sp. ART55/1] Length = 440 Score = 244 bits (622), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 151/467 (32%), Positives = 248/467 (53%), Gaps = 41/467 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFN--IVDTAGIAD 62 +AIVG PNVGKSTLFN L +K+++V + PG+TRDR+Y A IN + +N ++DT GI Sbjct: 6 VAIVGRPNVGKSTLFNVLAGEKISIVQDTPGVTRDRIY--ADINWLDYNFTLIDTGGIEP 63 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + I K M +Q E+AI A +ILF+ D + G+ D + LR+ PI++V NK+D Sbjct: 64 ESDNIILKSMREQAEIAIETADVILFMTDVRQGMVDDDAKVADMLRRSKKPIVLVVNKVD 123 Query: 123 T-RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 + + YE Y+L + IS LG ++ + F Sbjct: 124 SFEKFMPDVYEFYNLGLGDPHPISGSSRLGIGDMLDEVVSHFN----------------- 166 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 ES K++ E +P RIA++G+PNVGKS++IN+LLG +R++ +G TRD+ Sbjct: 167 -ESAKDDTEDE---------RP-RIAIIGKPNVGKSSIINKLLGEDRVIVSDIAGTTRDA 215 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 V DTAG+R+ S+I E +E+ ++ +++ +V C ++++DAT Sbjct: 216 VDTEIVRNGREYVFIDTAGLRRKSKIKEDIERYSIIRTVSAVERCNVAVLVIDATEGITD 275 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMV--SDK--LNLLQDLRTKAIKNLPQIGDIYINTIS 357 QD +I + G +++A+NKWD + +DK +++R K + +P ++ IS Sbjct: 276 QDAKIAGIAHDRGKGMIIAVNKWDAIEKNDKTIYKFTEEIRNK-LSYMPYAELLF---IS 331 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 +TG+ L L ++ + + RI T LN + + PP+ + +L YITQ+ Sbjct: 332 AQTGQRLPKLFETIDAVIENHSLRIATGVLNEIMSEAVAMQQPPSDKGKRLKLYYITQVS 391 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 PP+F+IF + SY RY+ NR+R +F G P+++ + K Sbjct: 392 VKPPTFVIFVNDKELMHFSYTRYIENRIRESFGFRGTPLKLIIRERK 438 >gi|251771600|gb|EES52176.1| GTP-binding protein (EngA) [Leptospirillum ferrodiazotrophum] Length = 468 Score = 244 bits (622), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 149/464 (32%), Positives = 228/464 (49%), Gaps = 14/464 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKSTLFNRL+ + A+ + PG+TRDR Y + +VDT GI G Sbjct: 14 VAILGRPNVGKSTLFNRLLGENRAITMDMPGVTRDRHYATVTQGPYAYRLVDTGGILFGD 73 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + + + Q A+ EA L+++L D+K G P D + +R P + NK D Sbjct: 74 DHPLGEAIRKQALFALEEADLLIYLFDAKDGYNPMDREVVEKIRASGKPAVYAVNKSDAP 133 Query: 125 IAQRNFY-EIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEM--IENNKRN 181 + + Y +V +SA H LG EL + + P+ P+E + + Sbjct: 134 TRESVLMADFYKYGVNPLVPVSALHGLGMDELLAPLAPYLPSA-PDDPMEAHRLVLGDLS 192 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 EE +E I +K + +P RIAV+GRPNVGKSTLIN LLG RL+T G TRD+ Sbjct: 193 EEEIRERI-------LKRLEEPARIAVIGRPNVGKSTLINHLLGEERLVTSPLPGTTRDA 245 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 + WK P DTAG+RK +I E+ E + ++ +++ E +VL+ Sbjct: 246 IDTLVTWKGRPYRFVDTAGIRKRGKIAEASEMYGIIRTERTLIQAEIAVVLISTPDGLTD 305 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTG 361 DLRI+ V + +VL NKWD K DL TK + P + + +SG TG Sbjct: 306 GDLRIIRQVIDARRGLVLVFNKWDATDPKEA--PDL-TKLGERYPFLAFAPVIALSGLTG 362 Query: 362 EGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 + + L + + + RI TS LN + PPP + R+ Y TQ+Q +P Sbjct: 363 KNIPALFRHIDTVRSWYYRRIGTSALNRAILPVVEHTPPPRLKTGAVRILYATQVQIAPT 422 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 +F P+ + +Y ++L ++R +G+P + + K Sbjct: 423 VIHLFSNHPDGLSPTYLQFLTRKIREIHPFTGVPFLLRPRGKKE 466 >gi|258404637|ref|YP_003197379.1| GTP-binding protein EngA [Desulfohalobium retbaense DSM 5692] gi|257796864|gb|ACV67801.1| ribosome-associated GTPase EngA [Desulfohalobium retbaense DSM 5692] Length = 441 Score = 244 bits (622), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 154/470 (32%), Positives = 253/470 (53%), Gaps = 34/470 (7%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ T+A++G NVGKSTLFNRL++K+ A+ + PG+TRDRLY + F +VDT G+ Sbjct: 1 MLPTVALIGRRNVGKSTLFNRLIRKQKALTHDRPGVTRDRLYAEVPHGEPPFALVDTGGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 ++ + + +Q A+ A LILF++D + G++ D + +FLR+ + P+ +V NK Sbjct: 61 VLDESDGVEADVFEQAREAMEGAQLILFVVDGRQGVSTIDEQLAAFLRQTDKPVRLVINK 120 Query: 121 MDTRIAQRNF-YEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNK 179 +D + E Y+L F + +SA H GT L I + Q P+E Sbjct: 121 VDGAELEDTLSAEFYALGFP-LSAVSAAHGYGTLTLQEEIEETL-QGLGAVPVE------ 172 Query: 180 RNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITR 239 E +++IT LR+A++GRPNVGKS+LIN L+G RL+ ++G T Sbjct: 173 --EGEQEDDIT-------------LRLALLGRPNVGKSSLINALVGEKRLVVSPEAGTTT 217 Query: 240 DSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPF 299 D V + + K D+AG+R+ S+I +SLE+ +V +++++ + + T++ LDA Sbjct: 218 DIVDVLFEKKGKRYIFLDSAGVRRRSKIDDSLERFSVLRALRNSKRAQVTVLCLDALQGV 277 Query: 300 EKQDLRIVDSVFNTGHAVVLALNKWDMV-SDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 QD +++ + ++A+NK D+V SD+L L+ ++ L + IY + +S Sbjct: 278 VGQDKKLLSFLDREKIPFIVAVNKVDLVPSDRLGQLKKYFENELRFLSHVPRIYTSAVSK 337 Query: 359 RTGEGLDDLMVSVLEINKLWK---TRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQ 415 GL L KLW TRI T LN L+ ++ PP + +R + Y+TQ Sbjct: 338 AGLGGLLPLT------EKLWSECTTRIGTGQLNRGLEDMIGRHQPPVVKHRRAKFYYLTQ 391 Query: 416 IQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 ++PP+F+ F N + SY RYL +LR F L PI++ F++S+ Sbjct: 392 TGTTPPTFVFFVNDKNLVKPSYARYLEKQLRKRFQLRMTPIQLYFRTSRG 441 >gi|150009038|ref|YP_001303781.1| GTP-binding protein EngA [Parabacteroides distasonis ATCC 8503] gi|166225833|sp|A6LEP5|DER_PARD8 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|149937462|gb|ABR44159.1| GTP-binding protein, Era/ThdF family [Parabacteroides distasonis ATCC 8503] Length = 437 Score = 243 bits (621), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 153/456 (33%), Positives = 232/456 (50%), Gaps = 30/456 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNRL + A+V G TRDR YG+ G F+++DT G Sbjct: 5 VAIVGRPNVGKSTLFNRLTGTRQAIVNEEAGTTRDRQYGKVEWTGKEFSLIDTGGWVVNS 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +++N Q ++AI EA +ILF++D GIT D + LR+ P+I+V+NK D Sbjct: 65 EDVFEEEINKQVKVAIEEADVILFVVDVLNGITDLDMEVAQILRRCKRPVIVVANKADNY 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 E YS E ISA + T +L I ++ E + Sbjct: 125 DLHPASAEFYSFGLGEPFCISAINGSYTGDLLDKIVATLPEEKVEILEEELP-------- 176 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 RIA++GRPN GKS+LIN +G +R + +G TRDS+ Sbjct: 177 --------------------RIAIIGRPNAGKSSLINAFIGEDRHIVTDIAGTTRDSIYT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 +N + DTAG+RK ++ E LE +V +S++++ + +++LDAT E QD+ Sbjct: 217 KYNKFGLNFYLVDTAGIRKKGKVNEDLEYYSVIRSIRTIENSDVCVLMLDATRGIESQDM 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKN-LPQIGDIYINTISGRTGEG 363 I V +V+ +NKWD++ DK + D T AI+ L D I IS T + Sbjct: 277 NIFSLVQKNKKGLVVCVNKWDLIEDKSQKVIDSYTTAIRERLAPFTDFPILFISALTKQR 336 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS-SPPS 422 + ++ + E+ + R+ T+ LN + PPP +Y ++KYITQ+ + S PS Sbjct: 337 ILKVLETAKEVYENRSKRVPTAKLNEVMLPIIENYPPPAWKGKYIKIKYITQLPAGSVPS 396 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 F+ FC P I + YKR+L N++R N+ +G PI + Sbjct: 397 FVFFCNLPQWIKDPYKRFLENKIRENWDFTGTPINI 432 >gi|329770413|ref|ZP_08261795.1| GTP-binding protein engA [Gemella sanguinis M325] gi|328836536|gb|EGF86196.1| GTP-binding protein engA [Gemella sanguinis M325] Length = 435 Score = 243 bits (621), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 134/455 (29%), Positives = 245/455 (53%), Gaps = 30/455 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AI+G PNVGKST+FN+++ ++++V + G+TRDR+Y +A F ++DT GI + Sbjct: 5 TVAIIGRPNVGKSTIFNKIIGDRLSIVEDVAGVTRDRIYSKAEWLNYSFFMIDTGGI-EL 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 ++ KQ+ Q ELAI+EA +I+FL + + G+T D + L K + P+++ NK+D Sbjct: 64 EDTPFQKQIRAQAELAIDEADVIIFLTNGRDGVTSDDEEVAKLLYKTDKPVVLAVNKIDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 Y+ YSL F + IS H LG +L + K FK ++E ++ +E+ Sbjct: 124 FDMNHMIYDFYSLGFGDPFPISGSHGLGIGDLLDEVCKNFK---------VLEEDEEDEK 174 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 +R +++GRPNVGKS+LIN +LG R++ +G TRD++ Sbjct: 175 --------------------IRFSLIGRPNVGKSSLINTILGKERVIASEIAGTTRDAID 214 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + + + DTAG+RK ++ E+ E+ +V +S++++ + +V+L+A +QD Sbjct: 215 TDFKYNGDEYVVIDTAGIRKRGKVYENCEKYSVLRSLKAIERSDVVLVVLNAEEGIIEQD 274 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 ++ +G V++ +NKWD ++ +++ K + + I +S +T + Sbjct: 275 KKVAGYAHESGKGVIIVVNKWDAIAKDDKTMKEFDEKIRDSFAYLDYAKIVYVSAKTKQR 334 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 + + + E + + RI +S LN + NP P + + Y +Q+ +PP+F Sbjct: 335 VFSIFPLIKESYENRQRRIQSSTLNEIVVDAVSMNPTPMDKGKRLNIFYASQVAINPPTF 394 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 + F +P + SY+R+L NR+R +F+ G PI++ Sbjct: 395 VFFVNYPELMHFSYERFLENRIRDSFNFEGTPIKL 429 >gi|262371654|ref|ZP_06064933.1| ribosome-associated GTPase EngA [Acinetobacter junii SH205] gi|262311679|gb|EEY92764.1| ribosome-associated GTPase EngA [Acinetobacter junii SH205] Length = 469 Score = 243 bits (621), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 148/467 (31%), Positives = 251/467 (53%), Gaps = 37/467 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA++G PNVGKSTLFN++ K + A+V + G+TRDR YG A+ F +VDT GI + Sbjct: 5 IALIGRPNVGKSTLFNQITKSRDALVADFAGLTRDRKYGDAVYQNKSFIVVDTGGIGE-N 63 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I M +Q++ AI+EA +I+F++D++AG+ D I LR + +V+NK+D Sbjct: 64 EGGIDSYMAEQSKTAIHEADIIIFVVDARAGLLASDEQIARELRTLGKKVYLVANKVDGV 123 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 A+ E Y L E ++++A H G ++ LE + +E+ Sbjct: 124 HAEAALVEFYKLGMGEPMQVAASHGRGVQQM----------------LEEVLAEVPEDEN 167 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P+E+ + G LR+A++GRPNVGKSTL+NRLLG R++ Q G TRDS+ I Sbjct: 168 PEEHNKNTG----------LRLAIIGRPNVGKSTLVNRLLGEERVVAFDQPGTTRDSIYI 217 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + DTAG+R+ ++ E +E+ ++ K++Q+++ +V++DA +QDL Sbjct: 218 PFERDGRQYTLIDTAGVRRKGKVDEMIEKFSIVKTLQAMKDAHVVVVVVDAREGIVEQDL 277 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIY----INTISGRT 360 ++ G A+V+A+NKWD N+ + R + ++ + D I+ IS Sbjct: 278 HLIGYALEAGRAMVIAINKWD------NMTEYDRKQCKLDVERRFDFIPWAKIHLISALH 331 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G G+ +L S+ + +++ + L L + PP+I R +++Y +P Sbjct: 332 GTGVGELYPSIHRAYESSNLKVSPAKLTQILNDATEAHQPPSIGGRRIKMRYAHMGGQNP 391 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 P+ +I +K P Y+RYL N R + L G P+++ F++S+NP+ Sbjct: 392 PTIVIHGNKVDKTPADYRRYLENVFRKVYKLEGTPVKIDFKTSENPF 438 >gi|147669843|ref|YP_001214661.1| GTP-binding protein EngA [Dehalococcoides sp. BAV1] gi|146270791|gb|ABQ17783.1| small GTP-binding protein [Dehalococcoides sp. BAV1] Length = 442 Score = 243 bits (621), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 150/462 (32%), Positives = 245/462 (53%), Gaps = 37/462 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG NVGKSTL NRL K +A+ + PG TRDRL+ +VDT G+ Sbjct: 9 IAIVGRQNVGKSTLLNRLAHKNLAITEDLPGTTRDRLFATVSWLDRRLIMVDTGGLDPDI 68 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I +Q+N Q LAI EA L+L ++D K G+ D+ + +R+ P+I+V+NK D Sbjct: 69 ESVIGQQVNIQISLAIKEADLVLLVVDVKDGLITPDYEMADIIRRTGKPVILVANKADNL 128 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + E YSL F E ISA H G S+L + ++ P+ P+ + Sbjct: 129 KMGQEATEFYSLGFGEPAVISAFHGTGISDLMDRVL----EELPDQPIA----------T 174 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P+E+ +SVK +A+VGR NVGKSTL+N LG +R + + G TRD++ Sbjct: 175 PEED------TSVK-------LALVGRTNVGKSTLLNTFLGEDRSIVSNIPGTTRDAIDT 221 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 ++ + + DTAG+R+ ++ +E+ +V ++++++ + ++++D QD Sbjct: 222 PLDFDGTNVLLIDTAGIRRRGKVESGVEKYSVLRALKAIDRADVVLLVMDTEELVTAQDT 281 Query: 305 RIVDSVFNTGHAVVLALNKWDM--VSDKLNLLQDL--RTKAIKNLPQIGDIYINTISGRT 360 I V +T +++ LNKWD+ DK + Q + R K + P I +SG+T Sbjct: 282 HIAGYVRDTAKGIIIILNKWDLGKGQDKAEVTQTIQSRFKFLDYAP------ILFVSGKT 335 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G G+D ++ L++ + RI T+ +NS + + + PP ++ Y TQ +++P Sbjct: 336 GRGVDTIIPMALKVQEERSKRIPTAKVNSVVTEALSAHTPPRQGKVQLKIFYATQAETNP 395 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 PSF+ F P + SY+R++ NRLR +F G PIR+ F++ Sbjct: 396 PSFVFFVNNPKLVHFSYERFIENRLRESFGFFGTPIRLTFKA 437 >gi|256827122|ref|YP_003151081.1| small GTP-binding protein domain/GTP-binding hypothetical protein [Cryptobacterium curtum DSM 15641] gi|256583265|gb|ACU94399.1| small GTP-binding protein domain/GTP-binding conserved hypothetical protein [Cryptobacterium curtum DSM 15641] Length = 444 Score = 243 bits (621), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 143/463 (30%), Positives = 229/463 (49%), Gaps = 24/463 (5%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + +A+VG PNVGKST NR+V A+V G+TRDR Y A NG F ++DT GI Sbjct: 4 HLVAVVGRPNVGKSTFVNRIVHSDEAIVHAMRGVTRDRSYHDADWNGHHFTLIDTGGIEM 63 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 G + + +Q A E +IL L+D + GIT D + LR++ P+++V NK+D Sbjct: 64 GDEDAFQTSIRNQAFTAARECDVILLLVDGRTGITADDEEVARILRREKAPVLVVVNKLD 123 Query: 123 TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 YE Y L + ISA H GT +L + + PN E EN+ +E Sbjct: 124 NLDTADAMYEFYRLGLGDPWPISAIHGTGTGDLLDAVVAELDKVTPN---ETCENDDDDE 180 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 + +A++GRPN GKS+L N L +R + +G TRD++ Sbjct: 181 --------------------IINVAIIGRPNAGKSSLTNMLSRNDRSIVSDVAGTTRDAI 220 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + + DTAG+R+ S+I E +E +SM+++ + ++++D T+ Q Sbjct: 221 DTLVAHEGRAYRLVDTAGLRRKSKIDEDVEYYGFVRSMRAIDRADVVLLMVDGTLGLTDQ 280 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D RI G A+V+ LNKWD+V + + + +R + ++L +G + +S TG+ Sbjct: 281 DQRIAGFAHERGCAMVIVLNKWDIV-EGADRKEAVRDQITESLRFVGFAPVVAVSALTGK 339 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 + ++ + I TS LN+WL + + + ++KY TQ PP Sbjct: 340 NTHRIWEAIDTAWDGYHREIPTSQLNNWLTDIREFGHTVSSGKKLLKVKYATQTGICPPQ 399 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 F F P + ++Y+RYL NR+R F L+G PIR+ F+ + Sbjct: 400 FTFFANHPEMVTDNYRRYLENRMRRTFDLTGTPIRIKFKRKDD 442 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 40/128 (31%), Positives = 63/128 (49%), Gaps = 12/128 (9%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI- 60 I +AI+G PN GKS+L N L + ++V + G TRD + G + +VDTAG+ Sbjct: 181 IINVAIIGRPNAGKSSLTNMLSRNDRSIVSDVAGTTRDAIDTLVAHEGRAYRLVDTAGLR 240 Query: 61 ------ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPI 114 D + + M AI+ A ++L ++D G+T D I F ++ + Sbjct: 241 RKSKIDEDVEYYGFVRSMR-----AIDRADVVLLMVDGTLGLTDQDQRIAGFAHERGCAM 295 Query: 115 IIVSNKMD 122 +IV NK D Sbjct: 296 VIVLNKWD 303 >gi|116629548|ref|YP_814720.1| GTP-binding protein EngA [Lactobacillus gasseri ATCC 33323] gi|116095130|gb|ABJ60282.1| Predicted GTPase [Lactobacillus gasseri ATCC 33323] Length = 427 Score = 243 bits (620), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 137/448 (30%), Positives = 231/448 (51%), Gaps = 30/448 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKST+FNR++ ++A+V + G+TRDR+Y +A G F ++DT GI Sbjct: 6 VALVGRPNVGKSTIFNRIINSRVAIVEDKAGVTRDRIYARAEWMGHEFILIDTGGIT-LD 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + I +Q+ Q E+AI+EA +I+ L D +T D I L + PII+ NK D Sbjct: 65 SGEIEEQIKAQAEIAIDEADVIVMLGDVTQHMTNMDETIAKMLYRTKKPIILAVNKADNP 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + Y+ YSL + + +S H G +L I F K H + I Sbjct: 125 EQRTDIYDFYSLGLGDPIPVSGSHGTGMGDLLDAIVGEFGDKANQHEDDSI--------- 175 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 R +V+GRPNVGKS+L+N +LG R++ + G TRD++ Sbjct: 176 --------------------RFSVIGRPNVGKSSLVNAILGEQRVIVSNIEGTTRDAIDT 215 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 ++ I DTAG+R+ ++ E E+ +V +++ ++ + T+++LDA+ +QD Sbjct: 216 TFTNDGQKYTIVDTAGIRRRGKVYEKTEKYSVLRAISAIEESDITLLVLDASTGIREQDK 275 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 + + G V++ +NKWD+ ++D + + I +S +TG+ + Sbjct: 276 HVAGYAHDAGRGVIIVVNKWDLPKKYSTSMKDFEDTIRQEFQYLDYAPIVFVSAKTGQRV 335 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 D++ V E++ RI +S LN L + P P + + R+ Y+TQ+ +PP+F+ Sbjct: 336 PDILKLVKEVHDNQTRRIKSSVLNDLLLEATRITPTPLVNGKRLRIYYMTQVAVTPPTFV 395 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLS 452 +F P + SY+R+LIN+LR NF Sbjct: 396 VFVNDPELLHFSYQRFLINQLRQNFDFG 423 >gi|323706096|ref|ZP_08117665.1| ribosome-associated GTPase EngA [Thermoanaerobacterium xylanolyticum LX-11] gi|323534540|gb|EGB24322.1| ribosome-associated GTPase EngA [Thermoanaerobacterium xylanolyticum LX-11] Length = 439 Score = 243 bits (620), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 146/456 (32%), Positives = 245/456 (53%), Gaps = 32/456 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + IVG PNVGKSTLFN++ +++++V + PG+TRDR+Y + F +VDT G+ Sbjct: 6 VGIVGRPNVGKSTLFNKITGQRISIVEDQPGVTRDRIYFETEWMDKRFILVDTGGLEPDS 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 ++ Q E A+ LILF+ID K G++P D I + LRK +++V NK+D Sbjct: 66 EDEFFSKIKMQVEAALKTVDLILFVIDGKEGVSPVDEDIAAMLRKSRKKVLLVLNKVDNF 125 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + ++Y+ L F E + ISA + LG +L + + P+H ++ +EE Sbjct: 126 KEMPISYYDSMRLGFGEPIAISASNGLGIGDLLDEVI----ENIPDHI------DEYDEE 175 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 + ++I+ +G+PNVGKS+L+N++LG R + G TRD++ Sbjct: 176 T-------------------IKISFIGKPNVGKSSLVNKILGEERAIVSDIPGTTRDALD 216 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + + I DTAGMRK RI + +E+ +V +++ ++ + I+++DAT +QD Sbjct: 217 TYFEKDDRKYVIIDTAGMRKKGRIEDKIERYSVLRALAAIDRSDICILVIDATEGPTEQD 276 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKN-LPQIGDIYINTISGRTGE 362 +I F A+++A+NKWD++ +K N + TK I+ + I IS +TG+ Sbjct: 277 TKIAGYAFEQNKAMIIAVNKWDLI-EKDNSTVNEYTKLIREKFSFMSFAPITYISAKTGQ 335 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 L+ L + + + RI+T LN+ + + L NPPP R ++ Y+TQ PPS Sbjct: 336 RLNKLFELINSVWGEYNKRISTGTLNNVISEALLINPPPAEKGRVLKVYYMTQFGIKPPS 395 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 F +F P + SY R++ N LR NF G+P+++ Sbjct: 396 FAVFVNDPEIMHFSYVRFIENTLRDNFGFEGVPLKI 431 >gi|163813998|ref|ZP_02205391.1| hypothetical protein COPEUT_00150 [Coprococcus eutactus ATCC 27759] gi|158450692|gb|EDP27687.1| hypothetical protein COPEUT_00150 [Coprococcus eutactus ATCC 27759] Length = 445 Score = 243 bits (620), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 150/468 (32%), Positives = 246/468 (52%), Gaps = 41/468 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFN--IVDTAGIAD 62 +AIVG PNVGKSTLFN L +K+++V + PG+TRDR+Y A IN + +N ++DT GI Sbjct: 11 VAIVGRPNVGKSTLFNVLAGEKISIVQDTPGVTRDRIY--ADINWLDYNFTLIDTGGIEP 68 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + I K M +Q E+AI A +I+F+ D + G+ D + LR+ PI++V NK+D Sbjct: 69 ETDNIILKSMREQAEIAIETADVIIFMTDVRQGMVDDDSKVADMLRRSKKPIVLVVNKVD 128 Query: 123 T-RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 + + YE Y+L + IS LG ++ + F Sbjct: 129 SFEKFMPDVYEFYNLGLGDPHPISGSSRLGIGDMLDEVVSHF------------------ 170 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 +ES KE + E +P RIA++G+PNVGKS++IN+LLG +R++ +G TRD+ Sbjct: 171 DESAKEEVEDE---------RP-RIAIIGKPNVGKSSIINKLLGEDRVIVSDIAGTTRDA 220 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 + DTAG+RK S+I E +E+ ++ +++ +V C ++++DAT Sbjct: 221 IDTEVVRNGREYVFIDTAGLRKKSKIKEDIERYSIIRTVSAVERCNVAVLVIDATEGITD 280 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMV--SDK--LNLLQDLRTKAIKNLPQIGDIYINTIS 357 QD +I G +++A+NKWD + +DK +++R K + +P ++ IS Sbjct: 281 QDAKIAGIAHERGKGMIIAVNKWDAIEKNDKTIYKFTEEIRNK-LSYMPYAELLF---IS 336 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 TG+ L L ++ + + R+ T LN + + PP+ + +L YITQ+ Sbjct: 337 AETGQRLPKLFETIDAVIENHSLRVATGVLNEIMSEAVAMQQPPSDKGKRLKLFYITQVS 396 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 PP+F+IF + SY RY+ NR+R +F G P++ + K Sbjct: 397 VKPPTFVIFVNDKELMHFSYTRYIENRIRESFGFRGTPLKFIIRERKE 444 >gi|227542010|ref|ZP_03972059.1| GTP-binding protein EngA [Corynebacterium glucuronolyticum ATCC 51866] gi|227182225|gb|EEI63197.1| GTP-binding protein EngA [Corynebacterium glucuronolyticum ATCC 51866] Length = 537 Score = 243 bits (620), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 143/464 (30%), Positives = 245/464 (52%), Gaps = 40/464 (8%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI- 60 + T+A+VG PNVGKS+L NR + ++ AVV + PG+TRDR+ A NG F + DT G Sbjct: 96 LCTVAVVGRPNVGKSSLVNRFLGRREAVVEDTPGVTRDRVSYLAEWNGQRFWVQDTGGWD 155 Query: 61 --ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVS 118 A G + +IA+Q E+A+ A +I+ ++D+ GIT D + L++ ++P+I+V+ Sbjct: 156 PDAKGIHAAIARQ----AEVAMETADVIVMVVDTNVGITASDEVMARNLQRSDVPVILVA 211 Query: 119 NKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 NK+D+ + E + L +SA+H G +++ I ++F Sbjct: 212 NKVDSPKQEAETAEFWGLGLDYPYPVSAQHGKGGADVLDQILELFP-------------- 257 Query: 179 KRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 + P++ +EG P R+A+VG+PNVGKS+L+N+L R + + +G T Sbjct: 258 ----DEPRQTSITEG---------PRRVALVGKPNVGKSSLLNKLSNEERSVVDNVAGTT 304 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 D V + + DTAG+R+ + E ++ ++ E I+++DA+ P Sbjct: 305 VDPVDSLVQLEGGLWKFIDTAGLRRKVKNASGHEYYASLRTKTAIDAAEVCILIIDASEP 364 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMV-SDKLNLLQDLRTKAIKNLPQIGDIYINTIS 357 +QD +++ + +G A+V+A NKWD+V D+ + L + + ++P I I+ + Sbjct: 365 ISEQDQKLLGMIVESGKALVIAFNKWDLVDEDRRDYLDREIDEQLAHVPWAKRINISAKT 424 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 GR + L+ +M+ LE W R++T LN+WL++ NPPP R R+ + TQ Sbjct: 425 GRALQKLEPVMLEALES---WDQRVSTGQLNNWLRQAIAANPPPMRGGRLPRVLFATQAS 481 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 S PP ++F T + SY+RYL + R F G P+R+ + Sbjct: 482 SQPPVIVLFST--GFLDASYRRYLERKFREQFGFEGTPVRIAVR 523 >gi|262383937|ref|ZP_06077073.1| ribosome-associated GTPase EngA [Bacteroides sp. 2_1_33B] gi|262294835|gb|EEY82767.1| ribosome-associated GTPase EngA [Bacteroides sp. 2_1_33B] Length = 437 Score = 243 bits (620), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 153/456 (33%), Positives = 232/456 (50%), Gaps = 30/456 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNRL + A+V G TRDR YG+ G F+++DT G Sbjct: 5 VAIVGRPNVGKSTLFNRLTGTRQAIVNEEAGTTRDRQYGKVEWTGKEFSLIDTGGWVVNS 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +++N Q ++AI EA +ILF++D GIT D + LR+ P+I+V+NK D Sbjct: 65 EDVFEEEINKQVKVAIEEADVILFVVDVLNGITDLDMEVAQILRRCKRPVIVVANKADNY 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 E YS + ISA + T +L I ++ E + Sbjct: 125 ELHPASAEFYSFGLGDPFCISAINGSYTGDLLDKIVATLPEEKVEILEEELP-------- 176 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 RIA++GRPN GKS+LIN +G +R + +G TRDS+ Sbjct: 177 --------------------RIAIIGRPNAGKSSLINAFIGEDRHIVTDIAGTTRDSIYT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 +N + DTAG+RK ++ E LE +V +S++++ + +++LDAT E QD+ Sbjct: 217 KYNKFGLNFYLVDTAGIRKKGKVNEDLEYYSVIRSIRAIENSDVCVLMLDATRGIESQDM 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKN-LPQIGDIYINTISGRTGEG 363 I V +V+ +NKWD+V DK + D T AI+ L D I IS T + Sbjct: 277 NIFSLVQKNKKGLVVCVNKWDLVEDKSQKVIDSYTTAIRERLAPFTDFPILFISAMTKQR 336 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS-SPPS 422 + ++ + E+ + R+ T+ LN + PPP +Y ++KYITQ+ + S PS Sbjct: 337 ILKVLETAKEVYENRSKRVPTAKLNEVMLPIIENYPPPAWKGKYIKIKYITQLPAGSVPS 396 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 F+ FC P I + YKR+L N++R N+ +G PI + Sbjct: 397 FVFFCNLPQWIKDPYKRFLENKIRENWDFTGTPINI 432 >gi|227499570|ref|ZP_03929677.1| GTPase [Anaerococcus tetradius ATCC 35098] gi|227218329|gb|EEI83583.1| GTPase [Anaerococcus tetradius ATCC 35098] Length = 437 Score = 243 bits (620), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 142/457 (31%), Positives = 235/457 (51%), Gaps = 29/457 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + +VG NVGKSTLFNRLV K+ ++ + G+TRDR+ + F +VDT G+ Sbjct: 6 VTLVGRTNVGKSTLFNRLVGKRKSITEDISGVTRDRIVDKVEWQNKEFLLVDTGGLDISN 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + ++ Q E A+ E L+LF++D + G P+D I + +RK N P+IIV+NK+D+ Sbjct: 66 KEIMNAEVKSQVEKALLETDLVLFVVDGREGPNPHDVDIANEVRKYNKPVIIVANKIDSF 125 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 Y+ Y F +++ ISAE G +L I Sbjct: 126 KMPDEIYDFYQFGFDDLLMISAEQSKGLGDLLDKI------------------------- 160 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 ++ + + I RIA++G+PN GKS+L+N LL R++ +G TRD+V Sbjct: 161 ----VSYIDFEAYEKIEDETRIAIIGKPNAGKSSLVNLLLNEERMIVTDIAGTTRDAVDS 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 W + + + DTAG+R+ S++ ES+E +++ +V + E + L+DA + +QD Sbjct: 217 YWTYNGNNYVLIDTAGLRRKSKVKESVEYYANQRTFDAVDSAEICLFLIDANVGVTEQDA 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 +I N A+++A+NKWD+V N ++++ + L I IS + Sbjct: 277 KIAGYAHNNKKAIIIAVNKWDLVDKDTNTMKNMEKDIREKLSFAPYAPIVFISVLENNRI 336 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 D L+ ++ + TRI T LN+ LQ L NPPP + ++ YI+Q+ ++PP F+ Sbjct: 337 DRLLELFEIVSNNYHTRIKTGVLNNILQDAILLNPPPQDKGKRLKIYYISQVSTAPPKFM 396 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 + + SY RYL N++R N+SL G+P F+ Sbjct: 397 LSINDRELVHFSYNRYLENQIRQNYSLVGVPFSFVFK 433 >gi|332686552|ref|YP_004456326.1| GTP-binding protein EngA [Melissococcus plutonius ATCC 35311] gi|332370561|dbj|BAK21517.1| GTP-binding protein EngA [Melissococcus plutonius ATCC 35311] Length = 436 Score = 243 bits (620), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 146/458 (31%), Positives = 234/458 (51%), Gaps = 33/458 (7%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAIVG PNVGKST+FNR+ +++++V + PG+TRDR+Y G F+I+DT GI D Sbjct: 5 TIAIVGRPNVGKSTIFNRIAGERISIVEDVPGVTRDRIYATGEWLGQAFSIIDTGGI-DL 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 N +Q+ Q E+AI EA +ILF+ + GIT D + L + N PII+ NK D Sbjct: 64 GNEPFIEQIKQQAEIAIEEADVILFITSIREGITDADELVAKILYRSNKPIILAVNKADN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + YE YSL + + IS H LG ++ F Q Sbjct: 124 PELRSEVYEFYSLGLGDPIPISGSHGLGIGDMLDEAINYFSQ------------------ 165 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 ++ ++ +++GRPNVGKS+LIN +LG R++ G TRD++ Sbjct: 166 -----------EEIEEDEDIIKFSLIGRPNVGKSSLINAILGEERVIVSEIEGTTRDAID 214 Query: 244 ISWNWKN-HPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + N + DTAGMRK ++ E+ E+ +V ++M+++ + +++L+A +Q Sbjct: 215 TYFTSPNGQKFLMIDTAGMRKRGKVYENTEKYSVMRAMRAIERSDIVLMVLNAQEGIREQ 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIY-INTISGRTG 361 D R+ G +++ +NKWD V + N L + + I+N Q D I +S +T Sbjct: 275 DKRVAGYAHEAGRGIIILVNKWDAVEKETNTLHEFEEE-IRNEFQYLDYAPILFVSAKTK 333 Query: 362 EGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 + L+ L + E++ RI +S LN + NP PT + ++ Y TQ+ PP Sbjct: 334 QRLNKLPALIEEVSMGQNLRIPSSLLNDVIMDAVAMNPTPTDKGKRLKIFYATQVAVKPP 393 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 +F++F + SY R+L N++R F G PI++ Sbjct: 394 TFVVFVNEEELMHFSYTRFLENQIRKAFMFEGTPIKII 431 >gi|25028117|ref|NP_738171.1| GTP-binding protein EngA [Corynebacterium efficiens YS-314] gi|259507174|ref|ZP_05750074.1| ribosome-associated GTPase EngA [Corynebacterium efficiens YS-314] gi|23493401|dbj|BAC18371.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] gi|259165255|gb|EEW49809.1| ribosome-associated GTPase EngA [Corynebacterium efficiens YS-314] Length = 552 Score = 243 bits (620), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 147/465 (31%), Positives = 242/465 (52%), Gaps = 42/465 (9%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI- 60 + T+AIVG PNVGKSTL NR + ++ AVV + PG+TRDR+ + G F + DT G Sbjct: 113 LCTVAIVGRPNVGKSTLVNRFIGRREAVVEDFPGVTRDRISYLSDWGGQRFWVQDTGGWD 172 Query: 61 --ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVS 118 G + SIA Q ELA+ A +I+F++D+K GIT D + L++ ++P+I+V+ Sbjct: 173 PNVKGIHASIAHQ----AELAMASADVIVFVVDTKVGITETDAVMARKLKRADVPVILVA 228 Query: 119 NKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 NK D+ + E Y+L + +SA+H G +++ I + F Sbjct: 229 NKFDSDSQWADMAEFYALGLGDPFPVSAQHGRGGADVLDKILESFP-------------- 274 Query: 179 KRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 E P+ EG P R+A+VG+PNVGKS+L+N+ G R + + +G T Sbjct: 275 ----EEPRAKSIVEG---------PRRVALVGKPNVGKSSLLNKFAGEERSVVDNVAGTT 321 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 D V + DTAG+RK + E ++ + + E ++L+D++ P Sbjct: 322 VDPVDSIIQLDQKMWKFIDTAGLRKKVKTATGHEFYASLRTRSVIDSAEVCVLLIDSSEP 381 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSD--KLNLLQDLRTKAIKNLPQIGDIYINTI 356 +QD R++ + + G A+V+A NKWD++ + + L ++L + + ++P I I+ Sbjct: 382 ITEQDQRVLAMITDAGKALVVAFNKWDLMDEDRRWELDRELDLQ-LAHIPWAKRINISAK 440 Query: 357 SGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQI 416 +GR + L+ M+ LE W R++T LN+WL++ NPPP R R+ + TQ Sbjct: 441 TGRALQRLEPAMIEALEN---WDRRVSTGQLNNWLREAIAANPPPMRGGRLPRVLFATQA 497 Query: 417 QSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 + PP ++F T + Y+RYL + R F +G PIR+ + Sbjct: 498 STRPPVIVLFTT--GFLEAGYRRYLERKFRERFGFNGTPIRIAVR 540 >gi|260905263|ref|ZP_05913585.1| GTP-binding protein EngA [Brevibacterium linens BL2] Length = 503 Score = 243 bits (620), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 146/457 (31%), Positives = 235/457 (51%), Gaps = 30/457 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ +A N F +VDT G D Sbjct: 69 LAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYRAEWNTKEFTLVDTGGW-DSD 127 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +A ++ Q+E+A++ A ++ ++D+ G T D + LR+K P+I+ +NK+D Sbjct: 128 SKGMASRIAIQSEVAVDMADAVVLVVDATTGPTATDEMVVKMLRRKKKPVILAANKVDDE 187 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + E++ L + +S H G ++L + I E S Sbjct: 188 RGELMAAELWGLGLGQPFTVSGLHGRGVADLLDEVLTILP-----------------EVS 230 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 E EG P RIA+VGRPNVGKS+L+N+L+G +R+L + +G TRD V Sbjct: 231 AVETRIEEG--------GPRRIALVGRPNVGKSSLLNQLIGSDRVLVDNVAGTTRDPVDE 282 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + DTAG+R+ + + ++ ++ E +VLL+ P +QD+ Sbjct: 283 LIELGDKQWRFVDTAGIRRRAHQASGADFYAALRTQTALERAELALVLLEVQEPLSEQDV 342 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 RIV + G AVVLA NKWD++ D+ L + ++L + IS +TG Sbjct: 343 RIVTTAAEAGRAVVLAFNKWDLLDDERRYY--LEREIERDLAHVAWAPRVNISAKTGRHA 400 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 D L+ ++ + W TRI T LN++L + NP P + R+ + TQ QS PP F+ Sbjct: 401 DKLVPAMEAALEGWDTRIPTGRLNAFLGELVAANPHPVRGGKQPRILFGTQAQSRPPKFV 460 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 +F + + Y+R+++ RLR F G PI + + Sbjct: 461 LFTS--GFLDPGYRRFIVRRLRETFGFKGTPIEVSMR 495 >gi|295398578|ref|ZP_06808610.1| ribosome-associated GTPase EngA [Aerococcus viridans ATCC 11563] gi|294973179|gb|EFG48974.1| ribosome-associated GTPase EngA [Aerococcus viridans ATCC 11563] Length = 436 Score = 243 bits (620), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 139/461 (30%), Positives = 242/461 (52%), Gaps = 29/461 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAIVG PNVGKST+FNR+V ++++V + PG+TRDR+Y Q G N++DT GI + Sbjct: 5 TIAIVGRPNVGKSTIFNRVVGDRISIVQDEPGVTRDRIYAQGEWLGKQLNVIDTGGI-EF 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + Q+ Q E+A+ EA +I+ + + + G+T D I S LRK + P+++ NK+D Sbjct: 64 NDQDFMTQIRLQAEIAMEEADVIIMMTNVREGVTKTDSQIASMLRKTDKPVVLAVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + Y+ YSL + IS H LG ++ +F + Sbjct: 124 PEQRAEIYDFYSLGLGDPYPISGSHGLGIGDILEEVFHL--------------------- 162 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 +P + + ++ A++GRPNVGKS+L+N +LG NR++ + +G TRD++ Sbjct: 163 APDDIENDDDDDTIS-------FALIGRPNVGKSSLVNAILGENRVIVSNVAGTTRDAID 215 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 S+ +I DTAG+RK ++ E+ E+ +V ++M+++ + +V+L+A QD Sbjct: 216 TSFEDDGQVYKIIDTAGIRKRGKVYEATEKYSVMRAMRAIERAQVCLVVLNAEEGIRDQD 275 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 I G +++ +NKWD + + ++ ++ I I +S T + Sbjct: 276 KTIAGYAHEAGRGIIIVVNKWDTLEKDNHTMKKFTDDIRRDFQFIDYAPIIFVSAETKQR 335 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 L L + ++ + R+ +S LN L NP P+ R R+ Y+TQ++S+PP+F Sbjct: 336 LVQLPEMIAHVHGNFNRRVQSSLLNEVLVDAIRINPAPSDKGRKLRIYYLTQVKSAPPTF 395 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 + F + SY+R+L N++R +F G PI++ ++ K Sbjct: 396 VAFVNDEELMHFSYERFLSNQIRKSFDFLGTPIQIITRNRK 436 Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 48/171 (28%), Positives = 82/171 (47%), Gaps = 12/171 (7%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 L IA+VGRPNVGKST+ NR++G + + G+TRD + W + + DT G+ Sbjct: 4 LTIAIVGRPNVGKSTIFNRVVGDRISIVQDEPGVTRDRIYAQGEWLGKQLNVIDTGGIEF 63 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 + + + Q ++ + ++ + I++ + K D +I + T VVLA+NK Sbjct: 64 NDQ--DFMTQIRLQAEI-AMEEADVIIMMTNVREGVTKTDSQIASMLRKTDKPVVLAVNK 120 Query: 324 WDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEI 374 D + + D + +GD Y ISG G G+ D++ V + Sbjct: 121 VDNPEQRAEIY-DFYSLG------LGDPY--PISGSHGLGIGDILEEVFHL 162 >gi|323342077|ref|ZP_08082310.1| ribosome-associated GTPase EngA [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464502|gb|EFY09695.1| ribosome-associated GTPase EngA [Erysipelothrix rhusiopathiae ATCC 19414] Length = 436 Score = 243 bits (620), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 138/458 (30%), Positives = 235/458 (51%), Gaps = 30/458 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 +AIVG PNVGKS+LFNR++ +++++V + G+TRDRLYG+ +DT GI Sbjct: 5 VVAIVGRPNVGKSSLFNRIMGERISIVHDEAGVTRDRLYGKTTWLTKDLRFIDTGGIQ-M 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + +++ Q ++AI+EA +ILF++ +K G+T D I LR+ N P+II +NK+D Sbjct: 64 EGQPFQEEIKMQVDIAIDEADIILFVVSAKEGMTTDDEFIARLLRQTNKPVIIAANKVDD 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + YE Y+L + E +S EH +G +L + K K P + M E+ Sbjct: 124 VQFVSDIYEFYALGYDEPFAVSCEHGIGLGDLLDEVIK----KLPQDGITMYEDE----- 174 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 L +GRPNVGKS+L+N +L +R++ + G TRD++ Sbjct: 175 --------------------LSFCAIGRPNVGKSSLVNAMLNQDRVIVSNIEGTTRDAID 214 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + I DTAG+RK ++ E +E+ +V ++M ++ + + L+D QD Sbjct: 215 TPFRMNERDYVIIDTAGIRKRGKVYEDVEKYSVLRAMSAIDRSDVVLFLIDGEAGIRAQD 274 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 +V G +++ NKWD+V + ++D++ + I +S T + Sbjct: 275 KHVVGFAHEAGKPIIIVYNKWDVVDKEETAMEDVKKVIRSEFMYLSYAPIVFVSALTRKR 334 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 + L+ + +++ RI+TS +N + + PPP+ + ++ Y +Q+ + PP+F Sbjct: 335 VHTLIPLIEDVHANSIKRISTSVINEVIHDAVMLTPPPSHNGKRLKVFYASQVSTVPPTF 394 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 +IF P SYKRYL N LR F +G PIR+ + Sbjct: 395 VIFVNDPELCHFSYKRYLENALRNAFDFTGTPIRILIR 432 >gi|164686350|ref|ZP_02210380.1| hypothetical protein CLOBAR_02788 [Clostridium bartlettii DSM 16795] gi|164601952|gb|EDQ95417.1| hypothetical protein CLOBAR_02788 [Clostridium bartlettii DSM 16795] Length = 450 Score = 243 bits (619), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 134/458 (29%), Positives = 240/458 (52%), Gaps = 28/458 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTLFN+L K++++V + PG+TRDR++ + F ++DT GI Sbjct: 16 VAVVGRPNVGKSTLFNKLAGKRISIVEDTPGVTRDRIFAEVEWLNKYFTLIDTGGIEKDN 75 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I QM +Q LA++ AH+I+F++D KAG+T D + LRK N P+++ NK+D+ Sbjct: 76 GDVILSQMRNQAMLAVDMAHIIIFVVDGKAGLTAADKEVAQILRKTNKPVLLAVNKIDSI 135 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 N Y+ Y L IS+ + +G +L E++EN Sbjct: 136 NQMDNIYDFYELGLGNPYAISSANSMGLGDLLD---------------EVVEN------F 174 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 PK + +E + +R+A+ G+PN GKS+++N +LG NR++ +G TRD++ Sbjct: 175 PK-GLNTEYDEDI------IRVAITGKPNAGKSSILNNILGENRVIVSPIAGTTRDAIDT 227 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + DTAG+R+ S++ E +E+ +V +SM +V + ++++DAT +QD Sbjct: 228 YFEKDGQQYLLIDTAGIRRKSKVYERVEKFSVIRSMSAVERADVVLIVIDATEGVTEQDT 287 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 ++ + G + +NKWD++ L + + + P + + +S T + + Sbjct: 288 KVAGIAHDEGKGCIFIVNKWDLIEKDNKTLGNYTKEIREKFPFMMYAPVLFVSALTNQRM 347 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 + ++ +V + R++TS LN + + + N PP+ R ++ Y +Q + PP F Sbjct: 348 NKILETVDYVASEHAKRVSTSALNDVIGEAVMLNQPPSDKGRRLKIYYGSQTGTKPPKFT 407 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 +F SY+RYL N++R NF G ++ ++ Sbjct: 408 LFINDKQLTHFSYQRYLENKIRENFGFEGTSVQFEYRE 445 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 35/128 (27%), Positives = 59/128 (46%), Gaps = 12/128 (9%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 I +AI G PN GKS++ N ++ + +V G TRD + +G + ++DTAGI Sbjct: 186 IIRVAITGKPNAGKSSILNNILGENRVIVSPIAGTTRDAIDTYFEKDGQQYLLIDTAGIR 245 Query: 62 DGKNC-------SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPI 114 S+ + M+ A+ A ++L +ID+ G+T D + + Sbjct: 246 RKSKVYERVEKFSVIRSMS-----AVERADVVLIVIDATEGVTEQDTKVAGIAHDEGKGC 300 Query: 115 IIVSNKMD 122 I + NK D Sbjct: 301 IFIVNKWD 308 >gi|37999700|sp|Q8FTK5|DER_COREF RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA Length = 528 Score = 243 bits (619), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 147/465 (31%), Positives = 242/465 (52%), Gaps = 42/465 (9%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI- 60 + T+AIVG PNVGKSTL NR + ++ AVV + PG+TRDR+ + G F + DT G Sbjct: 89 LCTVAIVGRPNVGKSTLVNRFIGRREAVVEDFPGVTRDRISYLSDWGGQRFWVQDTGGWD 148 Query: 61 --ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVS 118 G + SIA Q ELA+ A +I+F++D+K GIT D + L++ ++P+I+V+ Sbjct: 149 PNVKGIHASIAHQ----AELAMASADVIVFVVDTKVGITETDAVMARKLKRADVPVILVA 204 Query: 119 NKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 NK D+ + E Y+L + +SA+H G +++ I + F Sbjct: 205 NKFDSDSQWADMAEFYALGLGDPFPVSAQHGRGGADVLDKILESFP-------------- 250 Query: 179 KRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 E P+ EG P R+A+VG+PNVGKS+L+N+ G R + + +G T Sbjct: 251 ----EEPRAKSIVEG---------PRRVALVGKPNVGKSSLLNKFAGEERSVVDNVAGTT 297 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 D V + DTAG+RK + E ++ + + E ++L+D++ P Sbjct: 298 VDPVDSIIQLDQKMWKFIDTAGLRKKVKTATGHEFYASLRTRSVIDSAEVCVLLIDSSEP 357 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSD--KLNLLQDLRTKAIKNLPQIGDIYINTI 356 +QD R++ + + G A+V+A NKWD++ + + L ++L + + ++P I I+ Sbjct: 358 ITEQDQRVLAMITDAGKALVVAFNKWDLMDEDRRWELDRELDLQ-LAHIPWAKRINISAK 416 Query: 357 SGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQI 416 +GR + L+ M+ LE W R++T LN+WL++ NPPP R R+ + TQ Sbjct: 417 TGRALQRLEPAMIEALEN---WDRRVSTGQLNNWLREAIAANPPPMRGGRLPRVLFATQA 473 Query: 417 QSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 + PP ++F T + Y+RYL + R F +G PIR+ + Sbjct: 474 STRPPVIVLFTT--GFLEAGYRRYLERKFRERFGFNGTPIRIAVR 516 >gi|206603829|gb|EDZ40309.1| GTP-binding protein (EngA) [Leptospirillum sp. Group II '5-way CG'] Length = 469 Score = 243 bits (619), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 143/462 (30%), Positives = 234/462 (50%), Gaps = 14/462 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAI+G PNVGKSTLFNRL+ ++ A+V + PG+TRDR Y Q I F +VDT GI G Sbjct: 7 IAILGRPNVGKSTLFNRLLSRREAIVEDRPGVTRDRHYSQGTIGRKSFRLVDTGGILFGD 66 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + + + Q A+ EA +++++D + G P D + +R+ P + NK+DT Sbjct: 67 DHPLGESIRKQALFALEEADAVIYVMDGREGYLPVDADVIGRIRRSGKPSVFAVNKVDTV 126 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + + ++ ISA H L + P ++ R E+ Sbjct: 127 KTEEVLADFHRHGVAPLIGISAAHGRNVDALLDPFLDLMPDTEDAFP---VDPGIRFSEA 183 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 + ++ + + + I+ P R+AV+GRPNVGKSTL+NRLLG RL+T G TRD++ Sbjct: 184 SESDLQAWLQ---RRIADPPRVAVIGRPNVGKSTLVNRLLGEERLVTSPIPGTTRDAIDT 240 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 +++ DTAG+RK ++ E+ E ++ +++ E +VLL A DL Sbjct: 241 LVTFRDKTYHFVDTAGLRKKGKVAEASELYAQIRTDRAILESEIAVVLLSAEDGLTDGDL 300 Query: 305 RIVDSVFNTGHAVVLALNKWDMVS----DKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 RI+ V + ++LA NKWD + + +D+R + P + + S RT Sbjct: 301 RIIRQVIDHRRGLILAWNKWDTLKSSGPSQAPPFRDVRER----YPFLSFAPMFGCSART 356 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G + L + + + TRITTS LN+ L +PPP + N R+ Y+TQ+Q +P Sbjct: 357 GFHVSQLFGHIATVRDWYFTRITTSELNNLLLPIVQASPPPRLKNYPVRIFYVTQVQIAP 416 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 + F P I Y+++L ++R + G+P + Q+ Sbjct: 417 TVIMAFSNKPEGISLQYRQFLSRKIREKYPFVGVPFLLKVQA 458 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 52/206 (25%), Positives = 91/206 (44%), Gaps = 17/206 (8%) Query: 203 PLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMR 262 P IA++GRPNVGKSTL NRLL + + G+TRD + DT G+ Sbjct: 4 PPLIAILGRPNVGKSTLFNRLLSRREAIVEDRPGVTRDRHYSQGTIGRKSFRLVDTGGIL 63 Query: 263 KPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALN 322 L + K+++ ++ + I ++D + D ++ + +G V A+N Sbjct: 64 FGD--DHPLGESIRKQALFALEEADAVIYVMDGREGYLPVDADVIGRIRRSGKPSVFAVN 121 Query: 323 KWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK------ 376 K D V + +L D + L I I+ GR + L D + ++ + Sbjct: 122 KVDTVKTE-EVLADFHRHGVAPL-----IGISAAHGRNVDALLDPFLDLMPDTEDAFPVD 175 Query: 377 --LWKTRITTSYLNSWLQKTQLQNPP 400 + + + S L +WLQ+ ++ +PP Sbjct: 176 PGIRFSEASESDLQAWLQR-RIADPP 200 >gi|329120372|ref|ZP_08249039.1| ribosome-associated GTPase EngA [Neisseria bacilliformis ATCC BAA-1200] gi|327462327|gb|EGF08653.1| ribosome-associated GTPase EngA [Neisseria bacilliformis ATCC BAA-1200] Length = 490 Score = 243 bits (619), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 152/467 (32%), Positives = 226/467 (48%), Gaps = 30/467 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M TIA+VG PNVGKSTLFNRL + K A+V + PG+TRDR YG + + ++DT G Sbjct: 1 MKPTIALVGRPNVGKSTLFNRLTRSKDALVHDLPGLTRDRHYGHGRLGSKPYLVIDTGGF 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + I +M QT A++EA ++FL+D++ G+TP D I LR+ P+ + NK Sbjct: 61 EPVVDSGILHEMAKQTLQAVDEADAVVFLVDARTGLTPQDKIIADRLRQSPRPVYLAVNK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + E Y L E IS H G L I F Sbjct: 121 GEGGRHDVLAAEFYELALGEPRVISGAHGDGVYHLIEDILDSFPDA-------------- 166 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 EE+ E P+ AV+GRPNVGKSTL+N +LG R++ +G TRD Sbjct: 167 QEETATEK-------------HPV-FAVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRD 212 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ I + + P I DTAG+R+ ++ E++E+ +V K+MQ+V +++LDA Sbjct: 213 SIHIDFEREGKPFTIIDTAGVRRRGKVDEAVEKFSVIKAMQAVEASNVAVLVLDAQQDIA 272 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 QD I G A+V+A+NKWD +S++ D++ + L + + IS Sbjct: 273 DQDATIAGFALEAGRALVVAVNKWDGISEERR--NDIKRDIARKLYFLDFAKFHFISALK 330 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 +G+D L S+ ++ T + LQ + PP +++Y Q +P Sbjct: 331 EKGIDGLFDSIQAAYDAAMIKMPTPKITRVLQSAVERQQPPRAGLVRPKMRYAHQGGMNP 390 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 P +I I ESY RYL R F L G P+R+ + +NPY Sbjct: 391 PVIVIHGNALQHISESYTRYLTQTFRKAFHLQGTPLRIQYNVGENPY 437 >gi|261365613|ref|ZP_05978496.1| ribosome-associated GTPase EngA [Neisseria mucosa ATCC 25996] gi|288565845|gb|EFC87405.1| ribosome-associated GTPase EngA [Neisseria mucosa ATCC 25996] Length = 485 Score = 243 bits (619), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 151/467 (32%), Positives = 230/467 (49%), Gaps = 30/467 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M TIA+VG PNVGKSTLFNRL + K A+V + PG+TRDR YG I + ++DT G Sbjct: 1 MKPTIALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKIGSKPYLVIDTGGF 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + I +M QT A++EA ++FL+D + G+TP D I LR+ P+ + NK Sbjct: 61 EPVVDSGILHEMAKQTLQAVDEADAVVFLVDGRTGLTPQDKIIADRLRQSPRPVYLAVNK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + E Y L E IS H G L I +K+P E E Sbjct: 121 GEGGNRAVLAAEFYELALGEPHVISGAHGDGVYYLIEEIL----EKFPEPEAEETE---- 172 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 + P+ AV+GRPNVGKSTL+N +LG R++ +G TRD Sbjct: 173 -------------------VKHPV-FAVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRD 212 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ I + + P I DTAG+R+ ++ E++E+ +V K+MQ+V +++LDA Sbjct: 213 SIHIDFEREGKPFTIIDTAGVRRRGKVDEAVEKFSVIKAMQAVEAANVAVLVLDAQQDIA 272 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 QD I G A+V+A+NKWD +S++ + ++ + L + + IS Sbjct: 273 DQDATIAGFALEAGRALVVAVNKWDGISEEWR--EQIKRDISRKLYFLDFAKFHFISALK 330 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G+D L S+ +++T + LQ + PP +++Y Q +P Sbjct: 331 ERGIDGLFDSIQAAYNAAMIKMSTPKITRVLQSAIERQQPPRAGLVRPKMRYAHQGGMNP 390 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 P ++ + I +SY RYL R F+L G P+R+ + S+NPY Sbjct: 391 PVIVVHGNSLHAISDSYTRYLTQTFRKAFNLQGTPLRIQYNVSENPY 437 >gi|302670901|ref|YP_003830861.1| GTP-binding protein [Butyrivibrio proteoclasticus B316] gi|302395374|gb|ADL34279.1| GTP-binding protein [Butyrivibrio proteoclasticus B316] Length = 442 Score = 243 bits (619), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 148/462 (32%), Positives = 238/462 (51%), Gaps = 31/462 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTLFN L ++A+V + PG+TRDR+Y F ++DT GI Sbjct: 7 VAVVGRPNVGKSTLFNALAGSRIAIVQDTPGVTRDRIYQDVEWLNHSFTLIDTGGIEPDS 66 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 I QM DQ ++AI+ A +I+F++D K G+T D + LRK PI++ NK+D Sbjct: 67 KDIILAQMRDQAQIAIDTADVIIFMVDVKQGLTDSDSKVADMLRKSGKPIVLCVNKVDNY 126 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + YE Y+L E ISA + G +L + F Sbjct: 127 NRDSMDVYEFYNLGIGEPFPISAVNKQGIGDLLEEVVSHF-------------------- 166 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 K + E SVK IA++G+PNVGKS++IN+L+G NRL+ +G TRD++ Sbjct: 167 -SKSSTDEEEDDSVK-------IAIIGKPNVGKSSIINKLIGENRLIVSDIAGTTRDAID 218 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + DTAG+R+ ++I + LE + +++ +V + I++++A +QD Sbjct: 219 TPVKYNGKKYTFIDTAGLRRKNKIKDELEHYMIVRTVGAVERADVAILVINAEDGVTEQD 278 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKN-LPQIGDIYINTISGRTGE 362 +I +G AV++A+NKWD++ + +++ TK I+N L + I IS TG+ Sbjct: 279 AKIAGIAHESGKAVIIAVNKWDLIEKDNHSVKEF-TKDIRNTLAFMNYAEIIFISAETGQ 337 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 L L + +++ R++T LN + + + PP+ + +L YITQ PP+ Sbjct: 338 RLVKLYDMIDMVSENHALRVSTGVLNEIMTQAVVMQQPPSDKGKILKLYYITQASVKPPT 397 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 F+IF + SY RY+ N++R F G P+R + K Sbjct: 398 FVIFVNDKKLMHFSYTRYIENQIREAFGFKGTPLRFIIRERK 439 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 40/126 (31%), Positives = 64/126 (50%), Gaps = 2/126 (1%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 +SK +AVVGRPNVGKSTL N L G + G+TRD + W NH + DT Sbjct: 1 MSKRNIVAVVGRPNVGKSTLFNALAGSRIAIVQDTPGVTRDRIYQDVEWLNHSFTLIDTG 60 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+ S+ + + + ++ ++ T + I ++D D ++ D + +G +VL Sbjct: 61 GIEPDSK--DIILAQMRDQAQIAIDTADVIIFMVDVKQGLTDSDSKVADMLRKSGKPIVL 118 Query: 320 ALNKWD 325 +NK D Sbjct: 119 CVNKVD 124 >gi|332519774|ref|ZP_08396238.1| ribosome-associated GTPase EngA [Lacinutrix algicola 5H-3-7-4] gi|332044333|gb|EGI80527.1| ribosome-associated GTPase EngA [Lacinutrix algicola 5H-3-7-4] Length = 435 Score = 243 bits (619), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 141/452 (31%), Positives = 227/452 (50%), Gaps = 28/452 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST FNRL++++ A+V G+TRDR YG++ NG F+++DT G G Sbjct: 5 VAIVGRPNVGKSTFFNRLIQRREAIVDAVSGVTRDRHYGKSDWNGKEFSLIDTGGYVKGS 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +++ Q ELAI EA I+F++D +AG+T D + LRK P+ +V NK+D Sbjct: 65 DDIFEAEIDKQVELAIEEADAIIFMVDVEAGVTGMDEDVARLLRKVTKPVFLVVNKVDNG 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + E YSL + I++ + GT +L + + ++ + + Sbjct: 125 KRAEDAVEFYSLGLGDYFTIASINGSGTGDLLDALVEALPEQEEEEEKDELP-------- 176 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 R AVVGRPN GKS+ IN L+G +R + +G TRD++ Sbjct: 177 --------------------RFAVVGRPNAGKSSFINALIGEDRYIVTDIAGTTRDAIDT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 +N + DTAG+RK S++ E LE +V +S++++ + ++++DA F+ Q Sbjct: 217 KYNRFGFDFNLVDTAGIRKKSKVKEDLEFYSVMRSVRAIEHSDVCLLVVDANRGFDGQVQ 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 I +V+ +NKWD+V + + D+ I IS T + + Sbjct: 277 NIFWLAERNRKGIVILVNKWDLVEKDNKTTNEFEKYIRSQIEPFTDVPIVFISALTKQRI 336 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 + + +E+ K +I TS LN L PPP ++ ++KYI Q+ + P F Sbjct: 337 YKAIETAVEVYKNRSKKIKTSVLNDTLLPIIENYPPPAYKGKFVKIKYIMQLPTPQPQFA 396 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 FC P + E YKR+L N+LR F G+P+ Sbjct: 397 FFCNLPQYVREPYKRFLENKLRDLFDFEGVPV 428 >gi|298368463|ref|ZP_06979781.1| ribosome-associated GTPase EngA [Neisseria sp. oral taxon 014 str. F0314] gi|298282466|gb|EFI23953.1| ribosome-associated GTPase EngA [Neisseria sp. oral taxon 014 str. F0314] Length = 492 Score = 243 bits (619), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 150/467 (32%), Positives = 231/467 (49%), Gaps = 30/467 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M TIA+VG PNVGKSTLFNRL + K A+V + PG+TRDR YG I + ++DT G Sbjct: 8 MKPTIALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKIGSKPYLVIDTGGF 67 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + I +M QT A++EA ++FL+D + G+TP D I LR+ P+ + NK Sbjct: 68 EPVVDSGILHEMAKQTLQAVDEADAVVFLVDGRTGLTPQDKIIADRLRQSQRPVYLAVNK 127 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + E Y L E IS H G L I +K+P Sbjct: 128 GEGGNRAVLAAEFYELALGEPHVISGAHGDGVYYLIEEIL----EKFP------------ 171 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 E ++ ++ P+ AV+GRPNVGKSTL+N +LG R++ +G TRD Sbjct: 172 -----------EPEAEEADVKHPV-FAVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRD 219 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ I + + P I DTAG+R+ ++ E++E+ +V K+MQ+V +++LDA Sbjct: 220 SIHIDFEREGKPFTIIDTAGVRRRGKVDEAVEKFSVIKAMQAVEAANVAVLVLDAQQDIA 279 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 QD I G A+V+A+NKWD +S++ + ++ + L + + IS Sbjct: 280 DQDATIAGFALEAGRALVVAVNKWDGISEERR--EQIKRDISRKLYFLDFAKFHFISALK 337 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G+D L S+ ++ T + LQ + PP +++Y Q +P Sbjct: 338 ERGIDGLFDSIQAAYNAAMIKMPTPKITRVLQSAIERQQPPRAGLVRPKMRYAHQGGMNP 397 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 P ++ + I +SY RYL R F+L G P+R+ + S+NPY Sbjct: 398 PVIVVHGNSLHAISDSYTRYLTQTFRKAFNLQGTPLRIQYNVSENPY 444 >gi|57233850|ref|YP_182104.1| GTP-binding protein EngA [Dehalococcoides ethenogenes 195] gi|57224298|gb|AAW39355.1| GTP-binding protein [Dehalococcoides ethenogenes 195] Length = 441 Score = 243 bits (619), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 152/462 (32%), Positives = 244/462 (52%), Gaps = 37/462 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG NVGKSTL NRL K +A+ + PG TRDRL+ +VDT G+ Sbjct: 8 IAIVGRQNVGKSTLLNRLAHKNLAITEDLPGTTRDRLFTTVSWLDRRLIMVDTGGLDPDL 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I +Q+N Q LAI EA L+L ++D KAG+ D+ + +R+ P+I+V+NK D Sbjct: 68 ESIIGQQVNIQISLAIKEADLVLLVVDVKAGLITPDYEMADIIRRTGKPVILVANKADNL 127 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + E YSL F E ISA H G S+L + ++ P+ P+ + Sbjct: 128 KMGQEAAEFYSLGFGEPSVISAFHGSGISDLMDRVL----EELPDQPIA----------T 173 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P+E+ +SVK +A+VGR NVGKSTL+N +G R + + G TRD++ Sbjct: 174 PEED------NSVK-------LALVGRTNVGKSTLLNTFMGQERSIVSNIPGTTRDAIDT 220 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 N+ + + DTAG+R+ ++ +E+ +V +++++V + ++++D QD Sbjct: 221 PLNFNGTNVLLIDTAGIRRRGKVESGVEKYSVLRALKAVDRADIVLLVMDTEELVTAQDT 280 Query: 305 RIVDSVFNTGHAVVLALNKWDM--VSDKLNLLQDL--RTKAIKNLPQIGDIYINTISGRT 360 I V +T +++ LNKWD+ DK + Q + R K + P I +SG+T Sbjct: 281 HIAGYVRDTAKGIIIILNKWDLGKGQDKAEVTQTIQSRFKFLDYAP------ILFVSGKT 334 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G G+D ++ L++ + RI T+ +NS + + + PP ++ Y TQ ++P Sbjct: 335 GRGVDTIIPMALKVQEERNKRIPTAKVNSVVTEALSAHTPPHQGKTQLKIYYATQADTNP 394 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 PSF+ F P + SY+R++ NRLR +F G PIR+ F++ Sbjct: 395 PSFVFFVNNPKLVHFSYERFIENRLRESFGFFGTPIRLTFKA 436 >gi|110004318|emb|CAK98656.1| putative gtp-binding protein enga [Spiroplasma citri] Length = 438 Score = 243 bits (619), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 150/466 (32%), Positives = 243/466 (52%), Gaps = 38/466 (8%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AIVG PNVGKSTLFNR++K ++A+V + PG+TRDR+Y + F I+DT GI Sbjct: 6 TVAIVGRPNVGKSTLFNRIIKNRLAIVEDTPGVTRDRIYAFSEWLTREFLIIDTGGITLN 65 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 A+++ Q E+AI EA +I+F++ K GITP D + L + P+++V NK D Sbjct: 66 NTAMFAQEIKMQAEIAIAEADIIIFVLSYKEGITPDDEMVAKILYRSKKPVLLVINKYDK 125 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + +E +L F E + +SA H +G +L + Q P P Sbjct: 126 QEKESELFEYMTLGFGEPIAVSATHGIGIGDLLDQVISYLDQ-IPIQP------------ 172 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 +EG + +++G+PNVGKS+L N +LG R++ +G T DS+ Sbjct: 173 ------KTEG----------IHFSLIGKPNVGKSSLTNAILGEERVIVSPIAGTTTDSID 216 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 S+ N + DTAG+R+ ++ E LE+ +V +++ +++ + ++++D T+P QD Sbjct: 217 TSFKRNNQLYTVIDTAGIRRKGKVYEKLEKYSVLRAVSAIKRSDLVLLIIDGTVPITDQD 276 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINT-----ISG 358 I F ++L +NKWD V +K ++I+ + Y+N +S Sbjct: 277 TNIAGITFEQNKPIILVVNKWDAVMEKDERSMKKIEQSIRGYFK----YLNYAKMVFVSA 332 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 + L L ++ E+ R+ TS LN L K QL NPPP ++ Y TQ + Sbjct: 333 LEKKRLHILFQTIDEVYAGLTQRVKTSILNEILVKAQLLNPPPDFNGGRLKIYYATQPEG 392 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 P+F++FC P + SYKR+L N+LR F G+PI++ F+ K Sbjct: 393 IIPTFIMFCNNPKYLHFSYKRFLENQLREYFGFEGVPIKILFRERK 438 >gi|167626610|ref|YP_001677110.1| GTP-binding protein EngA [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|189037148|sp|B0TZQ0|DER_FRAP2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|167596611|gb|ABZ86609.1| GTP-binding protein [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 465 Score = 243 bits (619), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 158/472 (33%), Positives = 250/472 (52%), Gaps = 25/472 (5%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M + +AIVG NVGKSTLFN L + A+V + G+TRDR YGQA + + + +VDT GI Sbjct: 1 MSFLVAIVGRANVGKSTLFNVLTNSRDALVFDFEGVTRDRQYGQAKYDDLGYLVVDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 +D ++ + M Q+++AI+EA+L+ F++D ++G+T D + + LR+K+ +++V NK Sbjct: 61 SD-QDAGFDEFMAKQSQMAIDEANLVFFVVDGRSGLTSGDEYVANLLRQKDKRVVVVVNK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D + E Y L F ++ +SA H T +L K+ PL Sbjct: 120 VDGVEEESAMAEFYELGFDKVFAVSAAHRRNTQKL--------LDKFLKKPL-------- 163 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 NE T E K ++ + +++GRPNVGKSTL NR+LG +R++ G T D Sbjct: 164 NEFYRDYTQTQEHKEQQRH---GIHFSLIGRPNVGKSTLTNRMLGEDRVVVFDMPGTTID 220 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 SVSI + H I DTAG+R+ ++ ++LE+ +V K++Q+++ + ++DA Sbjct: 221 SVSIPFERHGHKYTIVDTAGVRRRGKVKQTLEKFSVIKTLQAIQDSNVVVAVVDAREGIS 280 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWD-MVSDKLNLL-QDLRTKAIKNLPQIGDIYINTISG 358 QDL ++ G A+VLA+NKWD M + NL+ QDL+ K L D++ IS Sbjct: 281 DQDLSLIHFAIKNGRALVLAINKWDGMTEEDRNLVKQDLKRKLF-FLEDYVDVHF--ISA 337 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 G + + S+ +ITT+ +Q + PP + +LKY Sbjct: 338 LHGTNVGHVFESIDTAYACANKKITTADATRLMQLAVEAHSPPMVGKFRIKLKYAHVGGH 397 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I N++P SYKRYL N R G PI F+ S+NP+ + Sbjct: 398 NPPVIVIHGNQVNRLPNSYKRYLENFFREALDFRGTPIVFEFKQSENPFADR 449 >gi|260221255|emb|CBA29636.1| GTP-binding protein engA [Curvibacter putative symbiont of Hydra magnipapillata] Length = 445 Score = 243 bits (619), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 160/473 (33%), Positives = 250/473 (52%), Gaps = 32/473 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M IA+VG PNVGKSTLFNRL K + A+V ++ G+TRDR YG F ++DT G Sbjct: 1 MKPVIALVGRPNVGKSTLFNRLTKTRDAIVADYAGLTRDRHYGNGKHGKQEFIVIDTGGF 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 I K+M QT A+ EA +++F++D++AG++ DH I ++LRK P ++V+NK Sbjct: 61 EPDAGSGIFKEMAKQTRQAVAEADVVVFVVDARAGLSAQDHDIGNYLRKLGKPCLVVANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + A E + L E+ +SA H G L +EM + Sbjct: 121 AEGMKAGSQLAEFFELGLGEVFPVSAAHGQGMRSL----------------IEMALDALH 164 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 EE P+++ S +K +AV GRPNVGKSTLIN LG RL+ G TRD Sbjct: 165 LEE-PEDDPEPSDPSVIK-------LAVAGRPNVGKSTLINTWLGEERLVAFDMPGTTRD 216 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 ++S+ + + E+ DTAG+RK ++ E++E+ +V K++Q++ + ++L+DA Sbjct: 217 AISVPFEREGQKFELVDTAGLRKKGKVFEAIEKFSVVKTLQAIESASVVLLLIDAEQGVT 276 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLL--QDLRTKAIKNLPQIGDIYINTISG 358 QD I + +G AVV+A+NKWD + + L + L T+ L + ++ IS Sbjct: 277 DQDAHIAGYILESGRAVVVAVNKWDAIDEYQRELVKRSLETR----LGFLKFAALHLISA 332 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNS-WLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 + +GL L ++ + +K ++ T L L+ Q Q P T R +L+Y Q Sbjct: 333 KKRQGLGPLWGAIAQAHKAANCKMPTPVLTRLLLEAVQFQTPKKTGAYR-PKLRYAHQGG 391 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I + E+YKR+L R R F+L G P+R+ +SS+NP+ K Sbjct: 392 MNPPIIVIHGNSLEHVTEAYKRFLEGRFRKEFNLIGTPLRIEMKSSQNPFADK 444 >gi|289433056|ref|YP_003462929.1| ribosome-associated GTPase EngA [Dehalococcoides sp. GT] gi|288946776|gb|ADC74473.1| ribosome-associated GTPase EngA [Dehalococcoides sp. GT] Length = 442 Score = 243 bits (619), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 150/462 (32%), Positives = 244/462 (52%), Gaps = 37/462 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG NVGKSTL NRL K +A+ + PG TRDRL+ +VDT G+ Sbjct: 9 IAIVGRQNVGKSTLLNRLAHKNLAITEDLPGTTRDRLFATVSWLDRRLIMVDTGGLDPDI 68 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I +Q+N Q LAI EA L+L ++D K G+ D+ + +R+ P+I+V+NK D Sbjct: 69 ESVIGQQVNIQISLAIKEADLVLLVVDVKDGLITPDYEMADIIRRTGKPVILVANKADNL 128 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + E YSL F E ISA H G S+L + ++ P+ P+ + Sbjct: 129 KMGQEATEFYSLGFGEPAVISAFHGTGISDLMDRVL----EELPDQPIA----------T 174 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P+E+ +SVK +A+VGR NVGKSTL+N LG R + + G TRD++ Sbjct: 175 PEED------TSVK-------LALVGRTNVGKSTLLNTFLGEERSVVSNIPGTTRDAIDT 221 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 ++ + + DTAG+R+ ++ +E+ +V ++++++ + ++++D QD Sbjct: 222 PLDFDGTNVLLIDTAGIRRRGKVESGVEKYSVLRALKAIDRADVVLLVMDTEELVTAQDT 281 Query: 305 RIVDSVFNTGHAVVLALNKWDM--VSDKLNLLQDL--RTKAIKNLPQIGDIYINTISGRT 360 I V +T +++ LNKWD+ DK + Q + R K + P I +SG+T Sbjct: 282 HIAGYVRDTAKGIIIILNKWDLGKGQDKAEVTQTIQSRFKFLDYAP------ILFVSGKT 335 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G G+D ++ L++ + RI T+ +NS + + + PP ++ Y TQ +++P Sbjct: 336 GRGVDTIIPMALKVQEERSKRIPTAKVNSVVTEALSAHTPPRQGKVQLKIFYATQAETNP 395 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 PSF+ F P + SY+R++ NRLR +F G PIR+ F++ Sbjct: 396 PSFVFFVNNPKLVHFSYERFIENRLRESFGFFGTPIRLTFKA 437 >gi|218282475|ref|ZP_03488734.1| hypothetical protein EUBIFOR_01316 [Eubacterium biforme DSM 3989] gi|218216571|gb|EEC90109.1| hypothetical protein EUBIFOR_01316 [Eubacterium biforme DSM 3989] Length = 435 Score = 242 bits (618), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 139/455 (30%), Positives = 235/455 (51%), Gaps = 30/455 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AIVG PNVGKST+FNRL+ ++ ++V + PG+TRDR+YG+ F ++DT GI Sbjct: 5 TVAIVGRPNVGKSTIFNRLIGQRKSIVDDTPGVTRDRIYGEVEWLTQTFRLIDTGGIQI- 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 ++ + A+++N Q ++AI EA +I+FL +K G+ D I L+K P+I+ NK+D Sbjct: 64 EDQAFAQEINMQVDIAIEEADVIIFLTSAKEGVMTDDTVIARKLQKCKKPVILACNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 Q N YE Y+L + V +S H +G +L ++ +K P L Sbjct: 124 PEMQMNVYEFYALGLGDPVVLSGAHGIGLGDLLDIVL----EKLPEKNL----------- 168 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 SP E ITS V+GRPNVGKS+L+N +L +R++ + G TRD++ Sbjct: 169 SPYEGITS--------------FCVIGRPNVGKSSLVNSILKEDRVIVSNVEGTTRDAID 214 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 ++ + I DTAG+RK +I E++E+ ++ +++ ++ + L+D QD Sbjct: 215 TPFHVDDKEYMIIDTAGIRKKGKIYENIEKYSILRALSAIDRSNVVLFLIDGEKGIRDQD 274 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 + + G V++ NKWD V + + + + I S TG Sbjct: 275 KHVAGLAHDAGKGVIIVYNKWDTVEKDEKTMAKIEKEIRAQFLYLNYAPIAFTSALTGSK 334 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 ++ L+ + +++ RI T+ LN + Q+ NP + ++ Y +Q+ PP+ Sbjct: 335 VNQLIPLIDQVHDACTLRIPTNILNDVILDAQMMNPAKPHLGKQLKIYYASQVAVEPPTI 394 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 ++F P + SY RY+ N+LR F +G PI++ Sbjct: 395 VLFVNDPELLHFSYARYIENKLREAFGFTGTPIKI 429 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 43/126 (34%), Positives = 67/126 (53%), Gaps = 6/126 (4%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 I + ++G PNVGKS+L N ++K+ +V N G TRD + ++ + I+DTAGI Sbjct: 174 ITSFCVIGRPNVGKSSLVNSILKEDRVIVSNVEGTTRDAIDTPFHVDDKEYMIIDTAGIR 233 Query: 62 DGKNCSIAKQMNDQTEL----AINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIV 117 K I + + + L AI+ ++++LFLID + GI D + +IIV Sbjct: 234 --KKGKIYENIEKYSILRALSAIDRSNVVLFLIDGEKGIRDQDKHVAGLAHDAGKGVIIV 291 Query: 118 SNKMDT 123 NK DT Sbjct: 292 YNKWDT 297 >gi|229829020|ref|ZP_04455089.1| hypothetical protein GCWU000342_01105 [Shuttleworthia satelles DSM 14600] gi|229792183|gb|EEP28297.1| hypothetical protein GCWU000342_01105 [Shuttleworthia satelles DSM 14600] Length = 441 Score = 242 bits (618), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 144/455 (31%), Positives = 235/455 (51%), Gaps = 29/455 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTLFN L +++++V + PG+TRDR+Y F ++DT GI Sbjct: 6 VAVVGRPNVGKSTLFNALAGERISIVEDTPGVTRDRIYADVSWLDHEFTMIDTGGIEPDS 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + I QM +Q ++AI+ A +I+F+ D + G+ D + LR+ PI++V NK+D Sbjct: 66 SDIILSQMREQAQIAIDTADVIIFMTDVRQGLVDADAKVADMLRRSKKPIVLVVNKVDDF 125 Query: 125 IAQ-RNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + YE Y+L + ISA LG ++ + F + ++++ R ++ Sbjct: 126 DKHVMDSYEFYNLGIGDPHPISAAGKLGFGDMLDAVIAHFPEP------DILD---REDD 176 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 +P RIAVVG+PNVGKS+LINRL G RL+ +G TRD+V Sbjct: 177 TP-------------------RIAVVGKPNVGKSSLINRLCGKQRLIVSDIAGTTRDAVD 217 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + DTAG+R+ SRI +E+ ++ +++ +V + ++++D +QD Sbjct: 218 TRVRFNKKDYIFVDTAGLRRKSRIQGDIERYSIVRAVAAVEKADVVVLVIDGAEGVSEQD 277 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 +I G AV++A+NKWD V + + D + K L + I IS TG+ Sbjct: 278 AKIAGIAHERGKAVIIAVNKWDAVEKDNHTMSDQIDRIHKTLSFMLYARIIFISALTGQR 337 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 L L ++ ++ R+ T LN + + PPT + ++ Y+TQ+ PP+F Sbjct: 338 LGQLYEAIDQVIAASTMRVGTGVLNEIVAEAVAMQQPPTDKGKRLKIFYVTQVAVKPPTF 397 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 ++F + SY RYL N++R NF G P+RM Sbjct: 398 VVFVNDKKLMHFSYVRYLENQIRQNFGFEGTPLRM 432 >gi|294670887|ref|ZP_06735743.1| hypothetical protein NEIELOOT_02591 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307374|gb|EFE48617.1| hypothetical protein NEIELOOT_02591 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 491 Score = 242 bits (618), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 148/467 (31%), Positives = 226/467 (48%), Gaps = 30/467 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M TIA+VG PNVGKSTLFNRL + K A+V + PG+TRDR YG + + ++DT G Sbjct: 1 MKPTIALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGRLGSKPYLVIDTGGF 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + I +M QT A++EA ++FL+D++ G+TP D I LR+ P+ + NK Sbjct: 61 EPVVDSGILHEMAKQTLQAVDEADAVVFLVDARTGLTPQDKIIADRLRQSPRPVYLAVNK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + E Y L E IS H G L + + F Sbjct: 121 GEGGRHDVLAAEFYELALGEPHVISGAHGDGVYHLIEKVLEHF----------------- 163 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 + K + P+ AV+GRPNVGKSTL+N +LG R++ +G TRD Sbjct: 164 ----------PDAKEESNEVKHPV-FAVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRD 212 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ I + + P I DTAG+R+ ++ E++E+ +V K+MQ+V +++LDA Sbjct: 213 SIHIDFEREGKPFTIIDTAGVRRRGKVDEAVEKFSVIKAMQAVEAANVAVLVLDAQQDIA 272 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 QD I G A+V+A+NKWD +S++ D++ + L + + IS Sbjct: 273 DQDATIAGFALEAGRALVIAVNKWDGISEERR--NDIKRDIARKLYFLDFAKFHYISALK 330 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G+D L S+ ++ T + LQ + P +++Y Q +P Sbjct: 331 ERGIDGLFDSIQAAYDAAFIKMPTPKITRVLQSAIERQQPARAGLVRPKMRYAHQGGMNP 390 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 P +I IP+SY RYL R F+L G P+R+ + +NPY Sbjct: 391 PVIVIHGNSLQHIPDSYTRYLTQTFRKAFNLQGTPLRIQYNVGENPY 437 >gi|303248222|ref|ZP_07334485.1| ribosome-associated GTPase EngA [Desulfovibrio fructosovorans JJ] gi|302490360|gb|EFL50271.1| ribosome-associated GTPase EngA [Desulfovibrio fructosovorans JJ] Length = 443 Score = 242 bits (618), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 150/466 (32%), Positives = 244/466 (52%), Gaps = 33/466 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNRL K+ A+ + PG+TRDRL + I ++DT G+ Sbjct: 5 VAIVGRPNVGKSTLFNRLAKRPKAITHDRPGVTRDRLEATVELGDRIVTLIDTGGMDFDA 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD-- 122 + +Q+ Q E+A+ A ++LFL+D KAG T D + LR+ P+I+ NK+D Sbjct: 65 PEGLERQIVVQAEIALTMADVVLFLVDGKAGRTAMDDEMAERLRRAGKPVIVAVNKVDGS 124 Query: 123 TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 RI + ++ F I+ +SA H G +L + K +K Sbjct: 125 ERIPALT-GDFHAWGFP-ILPLSAAHGHGLQDLAETLAKALPEK---------------- 166 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 E+P E ++ + R+AV+GRPN GKS+L+N LLG RL+ +G TRD+V Sbjct: 167 ETPGEEALPAPEAGI-------RLAVLGRPNAGKSSLVNELLGQERLIVSDVAGTTRDAV 219 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 ++ DTAG+RK +RIT+ LE+ +V K++ S + +V++DAT Q Sbjct: 220 DVALVKNGRRYVFVDTAGVRKRTRITDGLERYSVGKALGSAKRANVAVVVIDATGGVGVQ 279 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMV--SDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 D R++ + ++A+NK D+V D + L +D++ + L G + + IS Sbjct: 280 DKRLISYLDKERTPFLIAVNKIDLVPQKDMIALRKDIQDE----LRMCGHVPVLYISAAQ 335 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 +G+ ++ EI K + R+ T LN +++ ++ PP + R + Y+TQ P Sbjct: 336 RKGIGKVLPMAEEIWKECQIRVGTGALNRAMREVLDKHQPPLVNGRRAKFYYLTQASDPP 395 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNP 466 P+F+ F + ++ +SY RYL N LR F +S P+++ ++S P Sbjct: 396 PTFVFFVSDTERVRDSYMRYLENGLRKLFGISMAPVKVVCRASHKP 441 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 76/165 (46%), Gaps = 11/165 (6%) Query: 203 PLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMR 262 P +A+VGRPNVGKSTL NRL + +T + G+TRD + + + + + DT GM Sbjct: 2 PPIVAIVGRPNVGKSTLFNRLAKRPKAITHDRPGVTRDRLEATVELGDRIVTLIDTGGMD 61 Query: 263 KPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALN 322 + E LE++ V ++ ++ + + L+D D + + + G V++A+N Sbjct: 62 FDA--PEGLERQIVVQAEIALTMADVVLFLVDGKAGRTAMDDEMAERLRRAGKPVIVAVN 119 Query: 323 KWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDL 367 K D L D LP +S G GL DL Sbjct: 120 KVDGSERIPALTGDFHAWGFPILP---------LSAAHGHGLQDL 155 >gi|225181110|ref|ZP_03734557.1| small GTP-binding protein [Dethiobacter alkaliphilus AHT 1] gi|225168307|gb|EEG77111.1| small GTP-binding protein [Dethiobacter alkaliphilus AHT 1] Length = 440 Score = 242 bits (618), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 144/454 (31%), Positives = 237/454 (52%), Gaps = 31/454 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNRL+++++A+ G+TRDR+YG+A G F ++DT G+ + Sbjct: 6 VAIVGRPNVGKSTLFNRLIQRRLAIEEPTAGVTRDRIYGRADWTGHEFWLIDTGGLTFEE 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + I+++++ Q +LA+ EA++I+F++D ++G D+ + + LRK P+I+ +NK ++ Sbjct: 66 D-KISREIHRQVKLAMEEANVIIFVVDVRSGPVTLDYEVAAMLRKTTKPVILAANKAES- 123 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + E Y+L E S H LGT +L + K + E I Sbjct: 124 -PNFDMSEFYALGLGEPTLTSGAHGLGTGDLLDEVAKHLPETEEFPEDEEI--------- 173 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 LR+A++GRPNVGKS+L N+L G R++ G TRD++ + Sbjct: 174 -------------------LRVAIIGRPNVGKSSLTNKLSGTERVIVSDMPGTTRDAIDL 214 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 N DTAG+R+ S++ E++E +V +S+++ + + ++L+DA +QD Sbjct: 215 LIERDNRKYLFVDTAGIRRKSKVDEAVEYYSVLRSIRAAESADVVLMLIDAAEGVTEQDK 274 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 RI G A+V+ +NKWD V + R L I I IS TG+ + Sbjct: 275 RIAGIAHEAGRALVIVVNKWDKVEKDDKTMDAYRDNLRDELAYITYAPILFISALTGQRV 334 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 + + + + R+ TS LN L+ PPP+ + ++ Y+TQ++ PP+F Sbjct: 335 QRVYELIDYVAEQHALRVKTSRLNELLEDATAVVPPPSKKGKQLKIYYLTQVRVKPPTFS 394 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 IF P SY R+L N+LR + G PIR+ Sbjct: 395 IFVNDPELAHFSYIRFLENKLRETYGFEGTPIRI 428 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/123 (33%), Positives = 61/123 (49%), Gaps = 2/123 (1%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 I +AI+G PNVGKS+L N+L + +V + PG TRD + + + VDTAGI Sbjct: 173 ILRVAIIGRPNVGKSSLTNKLSGTERVIVSDMPGTTRDAIDLLIERDNRKYLFVDTAGIR 232 Query: 62 DGKNCSIAKQMND--QTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 A + ++ A A ++L LID+ G+T D I + ++IV N Sbjct: 233 RKSKVDEAVEYYSVLRSIRAAESADVVLMLIDAAEGVTEQDKRIAGIAHEAGRALVIVVN 292 Query: 120 KMD 122 K D Sbjct: 293 KWD 295 >gi|312869092|ref|ZP_07729266.1| ribosome biogenesis GTPase Der [Lactobacillus oris PB013-T2-3] gi|311095338|gb|EFQ53608.1| ribosome biogenesis GTPase Der [Lactobacillus oris PB013-T2-3] Length = 437 Score = 242 bits (618), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 141/456 (30%), Positives = 246/456 (53%), Gaps = 32/456 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNR+ +++++V + PG+TRDR+Y G FN++DT GI + Sbjct: 6 VAIVGRPNVGKSTLFNRIAGERISIVEDTPGVTRDRIYAHGEWLGKNFNMIDTGGI-ELS 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + Q+ Q E+AI+EA +I+ ++D ++G+T D + L + N P+++ NK+D Sbjct: 65 DQPLLTQIRQQAEIAIDEADVIVLVVDVESGVTDADEQVARILYRSNKPVVLAVNKVDNP 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + Y+ YSL E +S+ H +G +L + F Sbjct: 125 ERRNDIYDFYSLGLGEPYPVSSVHGVGLGDLLDAVIHNF--------------------- 163 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 EN +E S+ R +++GRPNVGKS+L+N +LG NR++ + +G TRD+++ Sbjct: 164 -PENAANEDDDSI-------RFSLIGRPNVGKSSLVNGILGENRVIVSNMAGTTRDAINT 215 Query: 245 SWNWKN-HPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + K+ + DTAG+RK +I E+ E+ + ++M+++ + +V+L+A + D Sbjct: 216 RFVAKDGQEFTMIDTAGIRKQGKIYENTERYALMRAMRAIDGSDVVLVVLNAEEGIREID 275 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQ-IGDIYINTISGRTGE 362 I G V++ +NKWD + ++ T I++ Q + I +S +T + Sbjct: 276 KHIAGYAHEAGCGVIIVVNKWDTLEERDQRTMTDFTNLIRHEFQYLSYAPIIFVSAKTKQ 335 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 L+ L + E+ + RI +S LN+ + NP PT + R+ Y TQ+ ++PP+ Sbjct: 336 RLNKLPEMIEEVYAHHERRIKSSVLNNVIMDAIAANPTPTQNGKRLRIFYATQVATAPPT 395 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 F++F P + SY+RYL N++R F +G PI + Sbjct: 396 FVVFVNDPELMHFSYERYLENQIRQAFDFTGTPIHI 431 >gi|255014874|ref|ZP_05287000.1| GTP-binding protein EngA [Bacteroides sp. 2_1_7] gi|256840958|ref|ZP_05546465.1| ribosome-associated GTPase EngA [Parabacteroides sp. D13] gi|298375727|ref|ZP_06985683.1| ribosome-associated GTPase EngA [Bacteroides sp. 3_1_19] gi|256736801|gb|EEU50128.1| ribosome-associated GTPase EngA [Parabacteroides sp. D13] gi|298266764|gb|EFI08421.1| ribosome-associated GTPase EngA [Bacteroides sp. 3_1_19] Length = 437 Score = 242 bits (618), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 152/456 (33%), Positives = 232/456 (50%), Gaps = 30/456 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNRL + A+V G TRDR YG+ G F+++DT G Sbjct: 5 VAIVGRPNVGKSTLFNRLTGTRQAIVNEEAGTTRDRQYGKVEWTGKEFSLIDTGGWVVNS 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +++N Q ++AI EA +ILF++D GIT D + LR+ P+I+V+NK D Sbjct: 65 EDVFEEEINKQVKVAIEEADVILFVVDVLNGITDLDMEVAQILRRCKRPVIVVANKADNY 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 E YS + ISA + T +L I ++ E + Sbjct: 125 DLHPASAEFYSFGLGDPFCISAINGSYTGDLLDKIVATLPEEKVEILEEELP-------- 176 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 RIA++GRPN GKS+LIN +G +R + +G TRDS+ Sbjct: 177 --------------------RIAIIGRPNAGKSSLINAFIGEDRHIVTDIAGTTRDSIYT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 +N + DTAG+RK ++ E LE +V +S++++ + +++LDAT E QD+ Sbjct: 217 KYNKFGLNFYLVDTAGIRKKGKVNEDLEYYSVIRSIRAIENSDVCVLMLDATRGIESQDM 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKN-LPQIGDIYINTISGRTGEG 363 I V +V+ +NKWD++ DK + D T AI+ L D I IS T + Sbjct: 277 NIFSLVQKNKKGLVVCVNKWDLIEDKSQKVIDSYTTAIRERLAPFTDFPILFISALTKQR 336 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS-SPPS 422 + ++ + E+ + R+ T+ LN + PPP +Y ++KYITQ+ + S PS Sbjct: 337 ILKVLETAKEVYENRSKRVPTAKLNEVMLPIIENYPPPAWKGKYIKIKYITQLPAGSVPS 396 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 F+ FC P I + YKR+L N++R N+ +G PI + Sbjct: 397 FVFFCNLPQWIKDPYKRFLENKIRENWDFTGTPINI 432 >gi|73749080|ref|YP_308319.1| GTP-binding protein EngA [Dehalococcoides sp. CBDB1] gi|73660796|emb|CAI83403.1| GTP-binding protein EngA [Dehalococcoides sp. CBDB1] Length = 442 Score = 242 bits (618), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 150/462 (32%), Positives = 244/462 (52%), Gaps = 37/462 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG NVGKSTL NRL K +A+ + PG TRDRL+ +VDT G+ Sbjct: 9 IAIVGRQNVGKSTLLNRLAHKNLAITEDLPGTTRDRLFATVSWLDRRLIMVDTGGLDPDI 68 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I +Q+N Q LAI EA L+L ++D K G+ D+ + +R+ P+I+V+NK D Sbjct: 69 ESVIGQQVNIQISLAIKEADLVLLVVDVKDGLITPDYEMADIIRRTGKPVILVANKADNL 128 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + E YSL F E ISA H G S+L + ++ P+ P+ + Sbjct: 129 KMGQEATEFYSLGFGEPAVISAFHGTGISDLMDRVL----EELPDQPIA----------T 174 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P+E+ +SVK +A+VGR NVGKSTL+N LG R + + G TRD++ Sbjct: 175 PEED------TSVK-------LALVGRTNVGKSTLLNTFLGEERSIVSNIPGTTRDAIDT 221 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 ++ + + DTAG+R+ ++ +E+ +V ++++++ + ++++D QD Sbjct: 222 PLDFDGTNVLLIDTAGIRRRGKVESGVEKYSVLRALKAIDRADVVLLVMDTEELVTAQDT 281 Query: 305 RIVDSVFNTGHAVVLALNKWDM--VSDKLNLLQDL--RTKAIKNLPQIGDIYINTISGRT 360 I V +T +++ LNKWD+ DK + Q + R K + P I +SG+T Sbjct: 282 HIAGYVRDTAKGIIIILNKWDLGKGQDKAEVTQTIQSRFKFLDYAP------ILFVSGKT 335 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G G+D ++ L++ + RI T+ +NS + + + PP ++ Y TQ +++P Sbjct: 336 GRGVDAIIPMALKVQEERSKRIPTAKVNSVVTEALSAHTPPRQGKVQLKIFYATQAETNP 395 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 PSF+ F P + SY+R++ NRLR +F G PIR+ F++ Sbjct: 396 PSFVFFVNNPKLVHFSYERFIENRLRESFGFFGTPIRLTFKA 437 >gi|241667168|ref|ZP_04754746.1| GTP-binding protein EngA [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254875720|ref|ZP_05248430.1| GTP-binding protein engA [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254841741|gb|EET20155.1| GTP-binding protein engA [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 465 Score = 242 bits (618), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 156/472 (33%), Positives = 251/472 (53%), Gaps = 25/472 (5%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M + +AIVG NVGKSTLFN L + A+V + G+TRDR YGQA + + + +VDT GI Sbjct: 1 MSFLVAIVGRANVGKSTLFNVLTNSRDALVFDFEGVTRDRQYGQAKYDDLGYLVVDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 +D ++ + M Q+++AI+EA+L+ F++D ++G+T D +++ LR+K+ +++V NK Sbjct: 61 SD-QDAGFDEFMAKQSQMAIDEANLVFFVVDGRSGLTSGDEYVSNLLRQKDKRVVVVVNK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D + E Y L F ++ +SA H T +L K+ PL Sbjct: 120 VDGVEEESAMAEFYELGFDKVFAVSAAHRRNTQKL--------LDKFLKKPL-------- 163 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 NE T E K ++ + +++GRPNVGKSTL NR+LG +R++ G T D Sbjct: 164 NEFYRDYTQTQEHKEQQRH---GIHFSLIGRPNVGKSTLTNRMLGEDRVVVFDMPGTTID 220 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 SVSI + H I DTAG+R+ ++ ++LE+ +V K++Q+++ + ++DA Sbjct: 221 SVSIPFERHGHKYTIVDTAGVRRRGKVKQTLEKFSVIKTLQAIQDSNVVVAVVDAREGIS 280 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVS--DKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 QDL ++ G A+VLA+NKWD ++ D+ + QDL+ K L D++ IS Sbjct: 281 DQDLSLIHFAIKNGRALVLAINKWDGMTEEDRNQVKQDLKRKLF-FLEDYVDVHF--ISA 337 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 G + + S+ +ITT+ +Q + PP + +LKY Sbjct: 338 LHGTNVGHVFESIDTAYACANKKITTADATRLMQLAVEAHSPPMVGKFRIKLKYAHVGGH 397 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I N++P SYKRYL N R G PI F+ S+NP+ + Sbjct: 398 NPPVIVIHGNQVNRLPNSYKRYLENFFREALDFRGTPIVFEFKQSENPFADR 449 >gi|328675592|gb|AEB28267.1| GTP-binding protein EngA [Francisella cf. novicida 3523] Length = 465 Score = 242 bits (617), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 159/472 (33%), Positives = 249/472 (52%), Gaps = 25/472 (5%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M + +AIVG NVGKSTLFN L + A+V + G+TRDR YGQA + + + +VDT GI Sbjct: 1 MSFLVAIVGRANVGKSTLFNVLTNSRDALVFDFEGVTRDRQYGQAKYDDLDYLVVDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 +D K+ + M Q+++AI+EA+L+ F++D +AG+T D + LR+K+ +++V NK Sbjct: 61 SD-KDIGFDEFMAKQSQIAIDEANLVFFVVDGRAGLTAGDEYVAGLLRQKDKKVVVVVNK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D + + YS F ++ ISA H T +L K+ PL Sbjct: 120 VDGTEEEAAMADFYSFGFDKVFAISAAHRRNTQKL--------VDKFLKKPL-------- 163 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 NE T E K ++ + +++GRPNVGKSTL NR+LG +R++ G T D Sbjct: 164 NEYYQDYTQTQEHKEQQRH---GIHFSLIGRPNVGKSTLTNRMLGEDRVVVFDMPGTTID 220 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 SVSI + H I DTAG+RK ++ ++LE+ +V K++Q+++ + ++DA Sbjct: 221 SVSIPFERHGHKYTIVDTAGVRKRGKVKQTLEKFSVIKTLQAIQDSNVVVAVVDARQGIS 280 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVS--DKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 QDL ++ G A+VLA+NKWD ++ D+ + QDL+ K L DI+ IS Sbjct: 281 DQDLSLIHFAIKNGRALVLAVNKWDGMTEEDRTQVKQDLKRKLF-FLQDYVDIHF--ISA 337 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 G + + S+ +ITT+ +Q + PP + +LKY Sbjct: 338 LHGTNVGHVFESIDTAYACANKKITTADATRLMQLAVEAHSPPMVGKFRIKLKYAHVGGH 397 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I +++P SYKRYL N R G PI F+ S+NP+ + Sbjct: 398 NPPVIVIHGNQVSRLPNSYKRYLENFFREALDFRGTPIVFEFKQSENPFADR 449 >gi|74316616|ref|YP_314356.1| GTP-binding protein EngA [Thiobacillus denitrificans ATCC 25259] gi|123773049|sp|Q3SL66|DER_THIDA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|74056111|gb|AAZ96551.1| GTP-binding protein [Thiobacillus denitrificans ATCC 25259] Length = 469 Score = 242 bits (617), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 152/475 (32%), Positives = 244/475 (51%), Gaps = 38/475 (8%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ T+ +VG PNVGKSTLFNRL + A+V + PG+TRDR YG+ I G + +VDT G+ Sbjct: 1 MLPTLVLVGRPNVGKSTLFNRLTGTRDALVHDLPGMTRDRHYGRGRIGGKPYLVVDTGGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 I +M QT AI+EA I+F++D++AG+TP D I LR+ P+++ NK Sbjct: 61 EPVVKDGILAEMARQTLQAIDEADAIIFMVDARAGVTPQDKVIADRLRRVTSPVLLAVNK 120 Query: 121 ---MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 M+ + F+E L E + IS H G ++L + F Sbjct: 121 AEGMNRAVVTAEFHE---LGLGEPLAISGAHGDGIADLVAEALAPF-------------- 163 Query: 178 NKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGI 237 P+E S+ + P +IA+VGRPNVGKSTL+N L+G R++ Q G Sbjct: 164 -------PEEEEASD------DFGVP-KIALVGRPNVGKSTLVNALVGAERVIAFDQPGT 209 Query: 238 TRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATI 297 TRDS+ + + P + DTAG+R+ ++ E++E+ +V K++Q++ +++LDA Sbjct: 210 TRDSIYVDFERGGKPYVLIDTAGVRRRGKVFETVEKFSVIKTLQAIEDANVVVLVLDARE 269 Query: 298 PFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTIS 357 +QD + V TG A+V+A+NKWD +S + D++ + L + N IS Sbjct: 270 NISEQDAHLAGFVLETGRALVVAINKWDGLSAEQR--DDVKRDIGRKLAFLDFARFNYIS 327 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 +GL++L+ + + +++T L L+ Q+ PP + +Y Q Sbjct: 328 ALKAKGLENLLKDIEAAHAAAFIKLSTPKLTRVLEMAVEQHAPPKNGLFRPKPRYAHQGG 387 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ--SSKNPYIKK 470 +PP ++ + + YKRYL + R F L G P+R+ + KNP+ K Sbjct: 388 KNPPVIVLHGNALEGLRDDYKRYLESSFRKAFKLQGTPLRIQIKEDEGKNPFEGK 442 >gi|297626315|ref|YP_003688078.1| GTP binding protein [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922080|emb|CBL56648.1| GTP binding protein [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 449 Score = 242 bits (617), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 147/467 (31%), Positives = 237/467 (50%), Gaps = 49/467 (10%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI---A 61 +A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ A G F +VDT G A Sbjct: 16 VAVVGRPNVGKSTLVNRILGRREAVVQDTPGVTRDRVSYDANWAGREFVLVDTGGWIAKA 75 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 +G + IA +Q E+AI A +LF++D+K G+T D A+ LR+ P+++ +NK+ Sbjct: 76 EGMSAHIA----EQAEMAIQLADAVLFVVDAKVGLTDEDEAVVKVLRRSGKPVVLAANKV 131 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D + ++ L E +SA H G+ +L + K+ + P E Sbjct: 132 DDERVEAEASSLWQLGLGEPYPVSALHGRGSGDLLDALVKVLPKTSAVEPDE-------- 183 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 + P R+A+VG+PNVGKS+L+NRL R + SG T D Sbjct: 184 ------------------VGGPHRVAIVGKPNVGKSSLLNRLASAQRSVVSDVSGTTVDP 225 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 V P + DTAG+RK + E ++ ++ E +V++DA+ P Sbjct: 226 VDELVTIAGEPFRLIDTAGIRKRVKEASGSEYYAWLRTQAAIERSEVCVVVIDASEPISD 285 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVSDKLN------LLQDLRTKAIKNLPQIGDIYINT 355 QDL+I+ SV G A+V+A NKWD+ ++ + + QDL+T K P + Sbjct: 286 QDLKILSSVEEAGRAMVVAFNKWDLTDEERHRYLGREIEQDLQT--WKWAPTV------N 337 Query: 356 ISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQ 415 IS TG +D + +V + W+TR++T LN++L + NP P + R+ + TQ Sbjct: 338 ISALTGRNVDKIAKAVNKSLAGWETRVSTGKLNAFLGRIVAANPHPVRGGKQPRILFGTQ 397 Query: 416 IQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 Q+ PP+F++F + + Y R++ +LR F G P+ + ++ Sbjct: 398 AQNRPPTFILFTS--GLMDAGYVRFVERKLREEFGFEGSPVHIQVRA 442 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 41/131 (31%), Positives = 67/131 (51%), Gaps = 2/131 (1%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + +AIVG PNVGKS+L NRL + +VV + G T D + I G F ++DTAGI Sbjct: 188 HRVAIVGKPNVGKSSLLNRLASAQRSVVSDVSGTTVDPVDELVTIAGEPFRLIDTAGIRK 247 Query: 63 GKNCSIAKQMND--QTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + + +T+ AI + + + +ID+ I+ D I S + + +++ NK Sbjct: 248 RVKEASGSEYYAWLRTQAAIERSEVCVVVIDASEPISDQDLKILSSVEEAGRAMVVAFNK 307 Query: 121 MDTRIAQRNFY 131 D +R+ Y Sbjct: 308 WDLTDEERHRY 318 >gi|238021706|ref|ZP_04602132.1| hypothetical protein GCWU000324_01609 [Kingella oralis ATCC 51147] gi|237866320|gb|EEP67362.1| hypothetical protein GCWU000324_01609 [Kingella oralis ATCC 51147] Length = 489 Score = 242 bits (617), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 152/467 (32%), Positives = 229/467 (49%), Gaps = 30/467 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M TIA+VG PNVGKSTLFNRL + K A+V + PG+TRDR YG + + +VDT G Sbjct: 1 MKPTIALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVVDTGGF 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + I +M QT A++EA ++FL+D++ G+TP D I LR+ P+ + NK Sbjct: 61 EPVVDSGILHEMAKQTLQAVDEADAVVFLVDARTGLTPQDKIIADRLRQSPRPVYLAVNK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + E Y L E IS H G L E++EN Sbjct: 121 GEGGRRDVLAAEFYELALGEPHVISGAHGDGVYYLIE---------------EILENFPD 165 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 +E+ EN P+ AV+GRPNVGKSTL+N +LG R++ +G TRD Sbjct: 166 ADETQPEN------------KHPV-FAVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRD 212 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ I + + P I DTAG+R+ ++ E++E+ +V K+MQ++ +++LDA Sbjct: 213 SIHIDFEREGKPFTIIDTAGVRRRGKVDEAVEKFSVIKAMQAIEAANIAVLVLDAQQDIA 272 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 QD I G A+V+A+NKWD +S++ D++ + L + + IS Sbjct: 273 DQDATIAGFALEAGRALVIAVNKWDGISEERR--NDIKRDIARKLYFLDFAKFHYISALK 330 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G+D L S+ + T + LQ + PP +++Y Q +P Sbjct: 331 ERGIDGLFDSIQAAYNAAFINMPTPKITRVLQSAVERQAPPRAGLVRPKMRYAHQGGMNP 390 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 P +I I +SY RYL R F+L G P+R+ + +NPY Sbjct: 391 PVIVIHGNSLGAISDSYTRYLTQTFRKAFNLQGTPLRIQYNVGENPY 437 >gi|317374946|sp|B3DXK2|DER_METI4 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA Length = 460 Score = 241 bits (616), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 147/463 (31%), Positives = 236/463 (50%), Gaps = 38/463 (8%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAIVG PNVGKS LFNRL K++++V + PG+TRDR+ G +VDT G+ Sbjct: 3 TIAIVGRPNVGKSLLFNRLCGKEISLVYDQPGVTRDRIVCCIKKEGKEIVLVDTGGLVFD 62 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 +AK + DQ +A+ EAH ILF++D + G+ P D I FLR+K+ + +V NK+D Sbjct: 63 CQTDLAKSLFDQISMAVEEAHHILFVVDGRTGLLPLDKQIAKFLREKHKAVTVVVNKLDH 122 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + E +L F+EI +SA H+LG ++L IF + ++ N P+ Sbjct: 123 PGMEHFCAEFANLGFEEIFAVSAAHNLGINQLLEKIFSLGAEEREN-PI----------- 170 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 + RIAV+G+PN GKS+LIN L+G +RL+ + G T D+V Sbjct: 171 ----------------FAPSTRIAVIGQPNAGKSSLINSLIGESRLVVHEEPGTTHDAVE 214 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + P DTAG++K +++ E LE K +++ S+ ++D QD Sbjct: 215 VGIEVCGVPFTFIDTAGLKKKNKLQEGLEIKVSGRTVHSINRSHLVWFIIDGQKGITLQD 274 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAI---KNLPQIGDIYINTISGRT 360 +I + ++ LNK D++ D+LNL + + + + LP + + +S Sbjct: 275 KKIGGLIQKAFKPCMVILNKIDLLEDRLNLKEGNKKGMLYVQEQLPFLSYAPVVVVSAEK 334 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQI---- 416 L+ ++L +++ K RI T L + Q+T Q PPP + + ++ Y TQI Sbjct: 335 KWNFKTLLSTLLRVDQERKKRIPTHRLTQFFQETLNQYPPPQVQGKRLKIYYATQIYDKE 394 Query: 417 ---QSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 S P+F++F PN I E+Y+++L + R F G P+ Sbjct: 395 GSGGSPCPTFILFVNNPNCIKETYQKFLEKQFRQAFCFRGCPL 437 >gi|329766866|ref|ZP_08258394.1| GTP-binding protein engA [Gemella haemolysans M341] gi|328837591|gb|EGF87216.1| GTP-binding protein engA [Gemella haemolysans M341] Length = 435 Score = 241 bits (616), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 134/455 (29%), Positives = 243/455 (53%), Gaps = 30/455 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AI+G PNVGKST+FN+++ ++++V + G+TRDR+Y +A F ++DT GI + Sbjct: 5 TVAIIGRPNVGKSTIFNKIIGDRLSIVEDVAGVTRDRIYSKAEWLNYSFFMIDTGGI-EL 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 ++ KQ+ Q ELAI+EA +I+FL + + G+T D + L K + P+++ NK+D Sbjct: 64 EDTPFQKQIRAQAELAIDEADVIIFLTNGRDGVTSDDEEVAKLLYKTDKPVVLAVNKIDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 Y+ YSL F + IS H LG +L + K FK ++E + +++ Sbjct: 124 FDMNHMIYDFYSLGFGDPFPISGSHGLGIGDLLDEVCKNFK---------VLEEEEEDDK 174 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 +R +++GRPNVGKS+LIN +LG R++ +G TRD++ Sbjct: 175 --------------------IRFSLIGRPNVGKSSLINTILGEERVIASDIAGTTRDAID 214 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + + DTAG+RK ++ ES E+ +V +S++++ + +V+L+A +QD Sbjct: 215 TDFKHNGDEYVVIDTAGIRKRGKVYESCEKYSVLRSLKAIERSDVVLVVLNAEEGIIEQD 274 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 ++ +G V++ +NKWD + +++ K + + I +S +T + Sbjct: 275 KKVAGYAHESGKGVIIVVNKWDAIEKDDKTMKEFEEKIRDSFAYLDYAKIVYVSAKTKQR 334 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 + ++ + E + + RI +S LN + NP P + + Y +Q+ +PP+F Sbjct: 335 VFNIFPLIKESYENRQRRIQSSTLNEIVVDAVSMNPTPQDKGKRLNIFYASQVAINPPTF 394 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 + F +P + SY+R+L NR+R +F+ G PI++ Sbjct: 395 VFFVNYPELMHFSYERFLENRIRDSFNFEGTPIKL 429 >gi|226324619|ref|ZP_03800137.1| hypothetical protein COPCOM_02403 [Coprococcus comes ATCC 27758] gi|225207067|gb|EEG89421.1| hypothetical protein COPCOM_02403 [Coprococcus comes ATCC 27758] Length = 442 Score = 241 bits (616), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 144/465 (30%), Positives = 240/465 (51%), Gaps = 35/465 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFN L +K+A+V + PG+TRDR+Y + F ++DT GI Sbjct: 6 VAIVGRPNVGKSTLFNALAGEKIAIVKDTPGVTRDRIYAEVNWLDKEFTLIDTGGIEPDS 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 I QM +Q ++AI+ A +ILF+ D K G+ D + LR+ + P+I+V NK+D Sbjct: 66 RDVILSQMREQAQIAIDTADVILFMTDVKQGLVDSDSKVADMLRRSHKPVILVVNKVDNF 125 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + YE Y+L + V ISA +G ++ + F Sbjct: 126 NKMMPDVYEFYNLGIGDPVPISASERIGIGDMLDKVLAYF-------------------- 165 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 EG + +P R+A+VG+PNVGKS++INRL+G +R++ +G TRD++ Sbjct: 166 -------PEGAGQEEEDDRP-RVAIVGKPNVGKSSIINRLIGKDRVIVSDIAGTTRDAID 217 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 DTAG+R+ ++I E LE+ ++ +++ +V + +V++DA +QD Sbjct: 218 TEVVHNGKEYVFIDTAGLRRKNKIKEELERYSIIRTVTAVERADVVLVVIDAAEGVTEQD 277 Query: 304 LRIVDSVFNTGHAVVLALNKWDMV--SDKLNLLQDLRTKAIKN-LPQIGDIYINTISGRT 360 +I G V++ +NKWD + +DK + + + + + LP +Y++ ++G+ Sbjct: 278 AKIAGIAHERGKGVIIVVNKWDAIEKNDKTTREYEHQIRMVLSFLPYAEIMYVSALTGQR 337 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 L D++ +V+E L R+ T LN + + PP+ + +L YITQ+ P Sbjct: 338 LPKLFDMIDTVIENQTL---RVATGVLNEIMTEAVAMQQPPSDKGKRLKLYYITQVAVKP 394 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 P+F+IF + SY RYL N++R F G ++ + K Sbjct: 395 PTFVIFVNDKELMHFSYTRYLENKIREAFGFRGTSLKFFIRERKE 439 >gi|255065190|ref|ZP_05317045.1| ribosome-associated GTPase EngA [Neisseria sicca ATCC 29256] gi|255050611|gb|EET46075.1| ribosome-associated GTPase EngA [Neisseria sicca ATCC 29256] Length = 535 Score = 241 bits (616), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 150/467 (32%), Positives = 231/467 (49%), Gaps = 30/467 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M TIA+VG PNVGKSTLFNRL + K A+V + PG+TRDR YG I + ++DT G Sbjct: 51 MKPTIALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKIGSKPYLVIDTGGF 110 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + I +M QT A++EA ++FL+D + G+TP D I LR+ P+ + NK Sbjct: 111 EPVVDSGILHEMAKQTFQAVDEADAVVFLVDGRTGLTPQDKIIADRLRQSPRPVYLAVNK 170 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + E Y L E IS H G L I +K+P Sbjct: 171 GEGGNRAVLAAEFYELALGEPHVISGAHGDGVYYLIEEIL----EKFP------------ 214 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 E ++ ++ P+ AV+GRPNVGKSTL+N +LG R++ +G TRD Sbjct: 215 -----------EPEAEEADVKHPV-FAVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRD 262 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ I + + P I DTAG+R+ ++ E++E+ +V K+MQ+V +++LDA Sbjct: 263 SIHIDFEREGKPFTIIDTAGVRRRGKVDEAVEKFSVIKAMQAVEAANVAVLVLDAQQDIA 322 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 QD I G A+V+A+NKWD +S++ + ++ + L + + IS Sbjct: 323 DQDATIAGFALEAGRALVVAVNKWDGISEERR--EQIKRDISRKLYFLDFAKFHFISALK 380 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G+D L S+ ++ T + LQ + PP +++Y Q +P Sbjct: 381 ERGIDGLFDSIQAAYNAAMIKMPTPKITRVLQSAIERQQPPRAGLVRPKMRYAHQGGMNP 440 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 P ++ + I +SY RYL R F+L G P+R+ + S+NPY Sbjct: 441 PVIVVHGNSLHAISDSYTRYLTQTFRKAFNLQGTPLRIQYNVSENPY 487 >gi|259503207|ref|ZP_05746109.1| ribosome-associated GTPase EngA [Lactobacillus antri DSM 16041] gi|259168864|gb|EEW53359.1| ribosome-associated GTPase EngA [Lactobacillus antri DSM 16041] Length = 437 Score = 241 bits (616), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 140/456 (30%), Positives = 245/456 (53%), Gaps = 32/456 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNR+ +++++V + PG+TRDR+Y G FN++DT GI + Sbjct: 6 VAIVGRPNVGKSTLFNRIAGERISIVEDTPGVTRDRIYAHGEWLGKNFNMIDTGGI-ELS 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + Q+ Q E+AI+EA +I+ ++D ++G+T D + L + N P+++ NK+D Sbjct: 65 DQPLLTQIRQQAEIAIDEADVIVLVVDVESGVTDADEQVARILYRSNKPVVLAVNKVDNP 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + Y+ YSL E +S+ H +G +L + F Sbjct: 125 ERRNDVYDFYSLGLGEPYPVSSVHGVGLGDLLDAVIHHF--------------------- 163 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 EN +E S+ R +++GRPNVGKS+L+N +LG NR++ + +G TRD+++ Sbjct: 164 -PENAANEADDSI-------RFSLIGRPNVGKSSLVNGILGENRVIVSNMAGTTRDAINT 215 Query: 245 SWNWKN-HPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + + + DTAG+RK +I E+ E+ + ++M+++ + +V+L+A + D Sbjct: 216 RFVAPDGQEFTMIDTAGIRKQGKIYENTERYALMRAMRAIDDSDVVLVVLNAEEGIREID 275 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQ-IGDIYINTISGRTGE 362 I G V++A+NKWD + + T I++ Q + I +S +T + Sbjct: 276 KHIAGYAHEAGCGVIIAVNKWDTIEGRDQRTMTDFTNLIRHEFQYLSYAPIIFVSAKTKQ 335 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 L+ L + E+ + RI +S LN+ + NP PT + R+ Y TQ+ ++PP+ Sbjct: 336 RLNKLPEMIEEVYAHHERRIKSSVLNNVIMDAIAANPTPTQNGKRLRIFYATQVATAPPT 395 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 F++F P + SY+RYL N++R F +G P+ + Sbjct: 396 FVVFVNDPELMHFSYERYLENQIRQAFDFTGTPLHI 431 >gi|224541354|ref|ZP_03681893.1| hypothetical protein CATMIT_00514 [Catenibacterium mitsuokai DSM 15897] gi|224525688|gb|EEF94793.1| hypothetical protein CATMIT_00514 [Catenibacterium mitsuokai DSM 15897] Length = 435 Score = 241 bits (616), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 135/454 (29%), Positives = 234/454 (51%), Gaps = 30/454 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG NVGKSTLFNR++ +++++V + PG+TRDR+Y +A F I+DT GI + K Sbjct: 6 VAIVGRANVGKSTLFNRIIGERVSIVEDVPGVTRDRIYAKASWLTKEFRIIDTGGI-ELK 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N +Q+ Q E+AI EA +I+F+++ + G+T D+ + L+K P+++ NK+D Sbjct: 65 NADFTEQIKTQAEIAIEEADVIIFVVNGREGLTSEDNFVARMLQKSGKPVLLAVNKIDDV 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + N Y+ YSL E + +S+ H +G +L + ++ + + I Sbjct: 125 AFRDNIYDFYSLGIGEPIPVSSAHGIGVGDLLDEVIRVLPDEEDEFEEDEI--------- 175 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 +++++GRPNVGKS+L N +LG +R++ + G TRD++ Sbjct: 176 --------------------KVSIIGRPNVGKSSLTNAILGEDRVIVSNIEGTTRDAIDT 215 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 ++ + I DTAGMRK ++ E++E+ +V +++++V + + ++D +QD Sbjct: 216 AFEKDGYKYRIIDTAGMRKKGKVYENIEKYSVLRALKAVEQSDVILCVVDGERGIIEQDK 275 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 + G +VVL +NKWD V+ + + + + I +S + + Sbjct: 276 HVAGYAHELGKSVVLVVNKWDAVTKDEKTMAKMEKNLREQFKYLDYARIAFVSALKKQRI 335 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 + L ++E R+TTS LN + Q NP T ++ Y Q+ PP+F+ Sbjct: 336 NTLFDLIVEAYMNAHKRVTTSVLNDVIVDAQAMNPTTTFEGGRLKIYYANQVAVQPPTFV 395 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 +F P + SYKRYL N LR F G PI + Sbjct: 396 LFVNDPKFMHFSYKRYLENCLRDRFGFEGTPIHI 429 >gi|238916971|ref|YP_002930488.1| GTP-binding protein [Eubacterium eligens ATCC 27750] gi|259645875|sp|C4Z0C8|DER_EUBE2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|238872331|gb|ACR72041.1| GTP-binding protein [Eubacterium eligens ATCC 27750] Length = 441 Score = 241 bits (616), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 143/461 (31%), Positives = 235/461 (50%), Gaps = 29/461 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTLFN L +++++V + PG+TRDR+Y + F ++DT GI Sbjct: 6 VAVVGRPNVGKSTLFNSLCGQQISIVKDTPGVTRDRIYAEVSWLNHNFTLIDTGGIEPDT 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 I QM +Q E+AI A +I+F+ D K G+ D + LR+ + P+I+V NK+D+ Sbjct: 66 GDIILSQMREQAEIAIETADVIIFMTDVKQGLVDSDSKVADMLRRSHKPVILVVNKVDSF 125 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + YE Y+L E ISA + LG E+ + F Sbjct: 126 EKMMPDVYEFYNLGIGEPFPISAVNKLGFGEVLDEVVSHF-------------------- 165 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 EG + K +P ++A++G+PNVGKS++IN+L+G NR++ +G TRD++ Sbjct: 166 -------PEGSDTDKEDDRP-KVAIIGKPNVGKSSIINKLVGKNRVIVSDIAGTTRDAID 217 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + + DTAG+R+ S+I E LE+ ++ +++ +V + I+++DAT +QD Sbjct: 218 TAIKYNGKEYVFIDTAGLRRKSKIKEDLERFSIIRTVAAVERADIAILVIDATEGVTEQD 277 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 +I G +++A+NKWD + + + K L + I +S +TG+ Sbjct: 278 AKIAGIAHERGKGIIIAVNKWDDIEKNDKTIYEFTNKIKDTLAFMSYAEIIFVSAKTGQR 337 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 L+ + V I RI T LN L + PP+ + ++ Y+TQ+ PP+F Sbjct: 338 LNKIYELVDHIVDAQTMRIPTGVLNEILTEAVAMKQPPSDKGKRLKIYYMTQVSVKPPTF 397 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 ++F SY RY+ NR+R +F G IR + K Sbjct: 398 VMFVNDVALTHFSYTRYIENRIRESFGFRGTSIRFINRERK 438 >gi|284031167|ref|YP_003381098.1| small GTP-binding protein [Kribbella flavida DSM 17836] gi|283810460|gb|ADB32299.1| small GTP-binding protein [Kribbella flavida DSM 17836] Length = 460 Score = 241 bits (616), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 142/460 (30%), Positives = 235/460 (51%), Gaps = 31/460 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL NR++ ++ AVV + PG+TRDR+ A G F +VDT G D Sbjct: 27 LAIVGRPNVGKSTLVNRIIGRREAVVEDTPGVTRDRVSYDADWAGRAFTVVDTGGW-DPD 85 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +A + Q E+AI+ A +LF++D+ GIT D A+ LRK P+++ +NK+D + Sbjct: 86 AVGMAALVAAQAEVAIHAADAVLFVVDATVGITDADEAVVRVLRKSGKPVVLAANKVDDQ 145 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + ++SL E ISA H GT ++ + + P E Sbjct: 146 RVEAEAMNLWSLGIGEPFPISAMHGRGTGDMLDAVLAALPEAPPERDAE----------- 194 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 I P R+A+VG+PNVGKS+L+N++ +R++ SG T D V Sbjct: 195 ---------------IGGPRRVAIVGKPNVGKSSLLNKVAKEDRVVVSDVSGTTVDPVDE 239 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 DTAG+R+ + + E ++ ++ E +V++DA+ P +QDL Sbjct: 240 LITLAGRQWRFIDTAGIRRKVKNVQGHEYYASLRTNSAIERAEVVVVVIDASEPMTEQDL 299 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 RI+++V G A+V+A NKWD+V + L + ++L Q IS TG + Sbjct: 300 RIMNTVEEAGKALVIAYNKWDLVDEDRRYY--LEREIDRDLVQFRWAPRVNISALTGRHM 357 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 + L+ ++ W+TR+ T LN++L + +P P + ++ + TQ + PP+F Sbjct: 358 EKLVPAIEAALDGWQTRVPTGQLNAFLGRLVAAHPHPVRSGKQPKILFGTQASTMPPTFA 417 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 +F + +I SY+R++ RLR +F G P+ + ++ + Sbjct: 418 LFTS--GQIESSYQRFIERRLREDFGFVGSPVHVQVRARQ 455 >gi|291522204|emb|CBK80497.1| ribosome-associated GTPase EngA [Coprococcus catus GD/7] Length = 441 Score = 241 bits (616), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 145/466 (31%), Positives = 240/466 (51%), Gaps = 37/466 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKSTLFN L +++++V + PG+TRDR+Y F ++DT GI Sbjct: 6 VAIIGRPNVGKSTLFNALAGQQISIVKDTPGVTRDRIYADVNWLNTQFTMIDTGGIEPST 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 N I K M +Q E+AI A +I+FL D + G+ D + + +R+ P+++V NK+D Sbjct: 66 NDLILKSMREQAEIAIETADVIIFLTDVRQGVVDADFQVANMIRRSGKPVVLVVNKVDNF 125 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + YE Y+L + + IS LG ++ + K FK P E +E Sbjct: 126 KTMMADVYEFYNLGLGDPMPISGNSKLGLGDMLDEVIKHFK---PGTAEE------EADE 176 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 P +A+VG+PNVGKS+LIN+L G NR++ + +G TRD++ Sbjct: 177 RP-------------------HVAIVGKPNVGKSSLINKLTGENRVIVSNIAGTTRDAID 217 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 DTAG+R+ S+I E +E+ ++ +++ +V ++++DA +QD Sbjct: 218 TVIKHNGKEYVFIDTAGLRRKSKIKEDIERYSIIRTVSAVERANVVVLMIDAKEGVTEQD 277 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVS--DKL--NLLQDLRTKAIKNLPQIGDIYINTISGR 359 +I G +++A+NKWD + DK +D+R K + +P ++I+ +G+ Sbjct: 278 AKIAGIAHERGKGMIIAVNKWDAIEKDDKTMNKFTKDVREK-LAFMPYAEMLFISAETGQ 336 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 L D + +V+E + + R+ T LN L + PP+ R RL YITQ+ Sbjct: 337 RLPKLFDTIDAVIENHAM---RVGTGVLNEILSEAVAMKQPPSDKGRRLRLYYITQVSVK 393 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 PP+F+IF SY RY+ N++R F G P+ ++ K+ Sbjct: 394 PPTFVIFINDKELTHFSYTRYIENQIRETFGFRGTPLHFIYRERKD 439 >gi|301312102|ref|ZP_07218024.1| ribosome-associated GTPase EngA [Bacteroides sp. 20_3] gi|300830204|gb|EFK60852.1| ribosome-associated GTPase EngA [Bacteroides sp. 20_3] Length = 437 Score = 241 bits (616), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 151/456 (33%), Positives = 232/456 (50%), Gaps = 30/456 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNRL + A+V G TRDR YG+ G F+++DT G Sbjct: 5 VAIVGRPNVGKSTLFNRLTGTRQAIVNEEAGTTRDRQYGKVEWTGKEFSLIDTGGWVVNS 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +++N Q ++AI EA +ILF++D GIT D + LR+ P+I+V+NK D Sbjct: 65 EDVFEEEINKQVKVAIEEADVILFVVDVLNGITDLDMEVAQILRRCKRPVIVVANKADNY 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 E YS + ISA + T +L I ++ E + Sbjct: 125 ELHPASAEFYSFGLGDPFCISAINGSYTGDLLDKIVATLPEEKVEILEEELP-------- 176 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 RIA++GRPN GKS+LIN +G +R + +G TRDS+ Sbjct: 177 --------------------RIAIIGRPNAGKSSLINAFIGEDRHIVTDIAGTTRDSIYT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 +N + DTAG+RK ++ E LE +V +S++++ + +++LDAT E QD+ Sbjct: 217 KYNKFGLNFYLVDTAGIRKKGKVNEDLEYYSVIRSIRAIENSDVCVLMLDATRGIESQDM 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKN-LPQIGDIYINTISGRTGEG 363 I V +V+ +NKWD++ DK + D T AI+ L D + IS T + Sbjct: 277 NIFSLVQKNKKGLVVCVNKWDLIEDKSQKVIDSYTTAIRERLAPFTDFPMLFISAMTKQR 336 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS-SPPS 422 + ++ + E+ + R+ T+ LN + PPP +Y ++KYITQ+ + S PS Sbjct: 337 ILKVLETAKEVYENRSKRVPTAKLNEVMLPIIENYPPPAWKGKYIKIKYITQLPAGSVPS 396 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 F+ FC P I + YKR+L N++R N+ +G PI + Sbjct: 397 FVFFCNLPQWIKDPYKRFLENKIRENWDFTGTPINI 432 >gi|30248179|ref|NP_840249.1| GTP-binding protein EngA [Nitrosomonas europaea ATCC 19718] gi|37999533|sp|Q82XU6|DER_NITEU RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|30180064|emb|CAD84064.1| GTP-binding protein (HSR1-related):AAA ATPase superfamily [Nitrosomonas europaea ATCC 19718] Length = 467 Score = 241 bits (616), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 158/474 (33%), Positives = 233/474 (49%), Gaps = 41/474 (8%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+ +VG PNVGKSTLFNRL + + A+V + PG+TRDR YG + + +VDT G Sbjct: 4 TLVLVGRPNVGKSTLFNRLTRSRDAIVADIPGLTRDRHYGHGRLGLKPYLVVDTGGFEPV 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 I M QT A++EA ++LF++D + G+ D I LRK II+V NK + Sbjct: 64 VKSGILHAMAKQTLQAVDEADIVLFIVDGRQGLAAQDKIIAEQLRKTGQKIILVVNKTEG 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 E + L +SA H EL + F + + YP EE Sbjct: 124 MPYSSVTAEFHELGLGTPCAVSALHGDHLGEL--IDFAL--EGYPY-----------EEE 168 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 + E + K V IA+ GRPNVGKSTLIN LLG R++ Q G TRDS+ Sbjct: 169 TAAE--PGQEKCPV--------IAIAGRPNVGKSTLINTLLGEERVIAFDQPGTTRDSIY 218 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + + + + DTAG+R+ ++ E++E+ +V K++QS+ I++LDA QD Sbjct: 219 VDFEYGQRSYTLIDTAGLRRSGKVWETVEKFSVVKTLQSIEAANVVILVLDAHHEISDQD 278 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSD------KLNLLQDLRTKAIKNLPQIGDIYINTIS 357 I + TG ++V+A+NKWD + D K + L + NL I +Y N + Sbjct: 279 AHIAGFILETGRSLVVAINKWDGLDDYQREIIKREFERKLGFLSFANLHYISALYGNGVK 338 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLN-SWLQKTQLQNPPPTIFNRYNRLKYITQI 416 G LM SV + I T L + L Q PP +R +L+Y Q Sbjct: 339 G--------LMPSVDAAYAAARAHIPTPKLTRAMLAAVAKQQPPRGGMSR-PKLRYAHQG 389 Query: 417 QSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP ++ + +P++Y+RYL N R F L G P+R+ F++ NPY K Sbjct: 390 GENPPLIIVHGSMLEHVPQTYRRYLENTFREVFKLKGTPLRVEFRTGHNPYAGK 443 >gi|261880032|ref|ZP_06006459.1| ribosome-associated GTPase EngA [Prevotella bergensis DSM 17361] gi|270333272|gb|EFA44058.1| ribosome-associated GTPase EngA [Prevotella bergensis DSM 17361] Length = 437 Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 149/458 (32%), Positives = 239/458 (52%), Gaps = 30/458 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +AIVG PNVGKSTLFNRL + + A+V + G TRDR YG+ NG F+IVDT G Sbjct: 1 MANLVAIVGRPNVGKSTLFNRLTRTRHAIVSDIAGTTRDRQYGKCNWNGREFSIVDTGGW 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + + Q +A +EA LILFL+D + G+T +D + LR PII+V+NK Sbjct: 61 VVKSDDIFEDAIRQQVRIASDEADLILFLVDVETGLTDWDEDVAMVLRCSRKPIILVANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D E Y L + V ISA GT +L ++ K Sbjct: 121 VDNSGEAYISAEFYKLGLGDPVSISAISGSGTGDLLDLVVKTL----------------- 163 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 P +N + R AVVGRPN GKS+L+N +G +R + +G TRD Sbjct: 164 ----PSDNEEEIEEEIP-------RFAVVGRPNAGKSSLVNAFIGEDRHIVTEIAGTTRD 212 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ ++ + DTAG+R+ +++TE LE +V +S++++ + I+++DAT E Sbjct: 213 SIYTRFDKFGFDFYLVDTAGIRRKNKVTEDLEFYSVMRSIRAIENSDVCILMIDATRGIE 272 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKN-LPQIGDIYINTISGR 359 QD+ I + ++V+ +NKWD+V DK + + AI+ + D I S Sbjct: 273 AQDMNIFQLIQRNRKSLVVVVNKWDLVEDKDHQVVKTFENAIRERMSPFSDFPIIFASAL 332 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 T + + ++ + ++ K R+ T+ LN + Q PPP+I +Y ++KY +Q+ ++ Sbjct: 333 TKQRIFKVLETAKQVYINRKARVGTTKLNEVMLPIIEQTPPPSIKGKYIKIKYCSQLPNT 392 Query: 420 P-PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 PSF+ + P + E+Y+R+L N++R ++ + G PI Sbjct: 393 QIPSFVFYANLPQYVKENYRRFLENKIREHWPMHGCPI 430 >gi|118497053|ref|YP_898103.1| GTP-binding protein EngA [Francisella tularensis subsp. novicida U112] gi|194324288|ref|ZP_03058062.1| GTPase of unknown function family protein, putative [Francisella tularensis subsp. novicida FTE] gi|166198716|sp|A0Q534|DER_FRATN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|118422959|gb|ABK89349.1| GTP-binding protein [Francisella novicida U112] gi|194321735|gb|EDX19219.1| GTPase of unknown function family protein, putative [Francisella tularensis subsp. novicida FTE] Length = 465 Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 159/472 (33%), Positives = 250/472 (52%), Gaps = 25/472 (5%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M + +AIVG NVGKSTLFN L + A+V + G+TRDR YGQA + + + +VDT GI Sbjct: 1 MSFLVAIVGRANVGKSTLFNVLTNSRDALVFDFEGVTRDRQYGQAKYDDLDYLVVDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 +D K+ + M Q+++AI+EA+L+ F++D ++G+T D + S LR+K+ +++V NK Sbjct: 61 SD-KDVGFDEFMAKQSQIAIDEANLVFFVVDGRSGLTTGDEYVASLLRQKDKKVVVVVNK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D + E YS F ++ ISA H T +L K+ PL Sbjct: 120 VDGTDEEAAMAEFYSFGFDKVFAISAAHRRNTQKL--------VDKFLKKPL-------- 163 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 NE T E K ++ + +++GRPNVGKSTL NR+LG +R++ G T D Sbjct: 164 NEYYQDYTQTQEHKEQQRH---GIHFSLIGRPNVGKSTLTNRMLGEDRVVVFDMPGTTID 220 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 SVSI + I DTAG+RK ++ ++LE+ +V K++Q+++ + ++DA Sbjct: 221 SVSIPFERHGQKYTIVDTAGVRKRGKVKQTLEKFSVIKTLQAIQDSNVVVAVVDARQGIS 280 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVS--DKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 QDL ++ G A+VLA+NKWD ++ D++ + QDL+ K L DI+ IS Sbjct: 281 DQDLSLIHFAIKNGRALVLAVNKWDGMTEEDRIQVKQDLKRKLF-FLQDYVDIHF--ISA 337 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 G + + S+ +ITT+ +Q + PP + +LKY Sbjct: 338 LHGTNVGHVFESIDTAYACANKKITTADATRLMQLAVEAHSPPMVGKFRIKLKYAHVGGH 397 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I +++P SYKRYL N R G PI F+ S+NP+ + Sbjct: 398 NPPVIVIHGNQVSRLPNSYKRYLENFFREALDFRGTPIVFEFKQSENPFADR 449 >gi|254373886|ref|ZP_04989368.1| hypothetical protein FTDG_00040 [Francisella novicida GA99-3548] gi|151571606|gb|EDN37260.1| hypothetical protein FTDG_00040 [Francisella novicida GA99-3548] Length = 465 Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 159/472 (33%), Positives = 250/472 (52%), Gaps = 25/472 (5%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M + +AIVG NVGKSTLFN L + A+V + G+TRDR YGQA + + + +VDT GI Sbjct: 1 MSFLVAIVGRANVGKSTLFNVLTNSRDALVFDFEGVTRDRQYGQAKYDDLDYLVVDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 +D K+ + M Q+++AI+EA+L+ F++D ++G+T D + S LR+K+ +++V NK Sbjct: 61 SD-KDVGFDEFMAKQSQIAIDEANLVFFVVDGRSGLTTGDEYVASLLRQKDKKVVVVVNK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D + E YS F ++ ISA H T +L K+ PL Sbjct: 120 VDGTEEEAAMAEFYSFGFDKVFAISAAHRRNTQKL--------VDKFLKKPL-------- 163 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 NE T E K ++ + +++GRPNVGKSTL NR+LG +R++ G T D Sbjct: 164 NEYYQDYTQTQEHKEQQRH---GIHFSLIGRPNVGKSTLTNRMLGEDRVVVFDMPGTTID 220 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 SVSI + I DTAG+RK ++ ++LE+ +V K++Q+++ + ++DA Sbjct: 221 SVSIPFERHGQKYTIVDTAGVRKRGKVKQTLEKFSVIKTLQAIQDSNVVVAVVDARQGIS 280 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVS--DKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 QDL ++ G A+VLA+NKWD ++ D++ + QDL+ K L DI+ IS Sbjct: 281 DQDLSLIHFAIKNGRALVLAVNKWDGMTEEDRIQVKQDLKRKLF-FLQDYVDIHF--ISA 337 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 G + + S+ +ITT+ +Q + PP + +LKY Sbjct: 338 LHGTNVGHVFESIDTAYACANKKITTADATRLMQLAVEAHSPPMVGKFRIKLKYAHVGGH 397 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I +++P SYKRYL N R G PI F+ S+NP+ + Sbjct: 398 NPPVIVIHGNQVSRLPNSYKRYLENFFREALDFRGTPIVFEFKQSENPFADR 449 >gi|269795286|ref|YP_003314741.1| hypothetical protein Sked_19830 [Sanguibacter keddieii DSM 10542] gi|269097471|gb|ACZ21907.1| small GTP-binding protein domain/GTP-binding conserved hypothetical protein [Sanguibacter keddieii DSM 10542] Length = 531 Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 148/457 (32%), Positives = 235/457 (51%), Gaps = 31/457 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ A G F +VDT G + Sbjct: 99 LAVVGRPNVGKSTLVNRIIGRREAVVEDKPGVTRDRVSYPAEWGGRRFMLVDTGGW-EVD 157 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I ++ +Q E+AI+ A ++F++D+ G T D + LRK P+++ +NK+D Sbjct: 158 VAGIEARVAEQAEVAISLADAVMFVVDATVGPTATDEQVVKLLRKSGKPVVLCANKVDGP 217 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 A+ + E++SL E +SA H GT +L + K Sbjct: 218 RAEADASELWSLGLGEPHPVSALHGRGTGDLLDAAMRKLPTK------------------ 259 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 +E +V N P R+A+VGRPNVGKS+L+N++ G NR++ +G TRD V Sbjct: 260 ------TEHGVAVPN--GPRRVALVGRPNVGKSSLLNKVAGSNRVVVDPTAGTTRDPVDE 311 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 K DTAG+R+ T+ + ++ ++ E +VLLDA+ +QD Sbjct: 312 LIQLKGKDWVFVDTAGIRRRVHQTQGADFYASLRTQAAIEKAEVAVVLLDASEKLTEQDT 371 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 R++ V ++G +VV+A NKWD++ + L + K+L Q+ IS TG Sbjct: 372 RVISQVIDSGRSVVIAYNKWDLMDEDRRPF--LEREIEKDLVQVQWAPRVNISAATGWHT 429 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 D L+ ++ + W TRI+T LNS++ + NP P + R+ + TQ + PP F+ Sbjct: 430 DRLVPALERSLESWDTRISTGRLNSFMGELVAANPHPLRGGKQPRILFATQASTRPPRFV 489 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 IF T + Y+R++ RLR F G PI + + Sbjct: 490 IFAT--GFLEAGYRRFIERRLRETFGFEGSPISISVR 524 >gi|317153825|ref|YP_004121873.1| ribosome-associated GTPase EngA [Desulfovibrio aespoeensis Aspo-2] gi|316944076|gb|ADU63127.1| ribosome-associated GTPase EngA [Desulfovibrio aespoeensis Aspo-2] Length = 497 Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 145/474 (30%), Positives = 256/474 (54%), Gaps = 38/474 (8%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL++K A+ + PG+TRDR+YG+ + V F++VDT G+ Sbjct: 1 MLPIVALVGRPNVGKSTLFNRLLRKSRAITHDLPGVTRDRIYGECQMGDVKFDLVDTGGM 60 Query: 61 ADGKNCS--IAKQMND----QTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPI 114 + ++K D Q AINEAH ILF++D K G++P D F+R+ P+ Sbjct: 61 VLESEATPELSKDFEDEIFEQAREAINEAHAILFVVDGKQGMSPLDEQAAEFVRRSGKPV 120 Query: 115 IIVSNKMDT-RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLE 173 +++ NK+D+ +A + E ++L + +SA H LH V ++K L+ Sbjct: 121 MVLVNKVDSHEVAAQGTAEFHALGLP-VFPVSAAHGYN---LHEV-----REKVRRFVLD 171 Query: 174 MIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGS 233 + ++ +E+ T G LR+ ++GRPN GKS++INR++G +RL+ Sbjct: 172 L------GMDTDEEDTTERG----------LRLTMLGRPNAGKSSIINRIIGTDRLIVSD 215 Query: 234 QSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLL 293 +G TRDS+ +++ + DTAG+R+ + I E LE+ +V +++++ + + TI+++ Sbjct: 216 VAGTTRDSIDVTFERQGKRYTFVDTAGVRRRANIQEHLEKISVIRALKNSKRSDVTILVI 275 Query: 294 DATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMV--SDKLNLLQDLRTKAIKNLPQIGDI 351 D T+ +QD R+++ + ++ NK D++ S+ L+ R + ++ +P + I Sbjct: 276 DITLGVGRQDKRLIEFLAKEKTPFMVVCNKADLIPRSETKRALEAFREE-LRIIPYVPLI 334 Query: 352 YINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLK 411 S G G+ ++ + + + RI T LN L + + PP + R + Sbjct: 335 M---TSANKGVGIGKIIPLAETLRRECEIRIGTGVLNRALAQVLEKLQPPVVKRRRPKFF 391 Query: 412 YITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 Y+TQ P+F+ FC + ESY RYL N+ R ++ P+ + F+SS + Sbjct: 392 YVTQADEPVPTFVFFCNDHTLVKESYARYLENQFRKLLGINSAPVDVVFRSSHD 445 >gi|293374967|ref|ZP_06621262.1| ribosome-associated GTPase EngA [Turicibacter sanguinis PC909] gi|325843340|ref|ZP_08167923.1| ribosome biogenesis GTPase Der [Turicibacter sp. HGF1] gi|292646377|gb|EFF64392.1| ribosome-associated GTPase EngA [Turicibacter sanguinis PC909] gi|325489369|gb|EGC91742.1| ribosome biogenesis GTPase Der [Turicibacter sp. HGF1] Length = 436 Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 144/458 (31%), Positives = 236/458 (51%), Gaps = 29/458 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST+FNR+V ++++V + PGITRDR+Y FN++DT GI G Sbjct: 6 VAIVGRPNVGKSTIFNRIVGSRVSIVEDEPGITRDRIYSSGEWLTRKFNVIDTGGIEIG- 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +Q+ Q E+A++EA +I+F+ +++ GIT D + + L K P++++ NK+D Sbjct: 65 DEPFMRQIKYQAEIAMDEADVIVFVTNARDGITQADQEVANMLYKTKKPVVLIVNKVDDI 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + YE YSL + + SA H +G ++ I L M E + E Sbjct: 125 NFKEQIYEFYSLGLGDPIATSAIHGIGFGDMLDQIV-----------LNMPEKKGMDYE- 172 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 E++ ++ +++GRPNVGKS+L N LLG R++ +G TRD++ Sbjct: 173 --EDV--------------IKFSLIGRPNVGKSSLTNALLGEERVIVSDIAGTTRDAIDT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + DTAGMRK ++ E+ E+ +V +++ ++ + ++++DA+ +QD Sbjct: 217 EFTKDGQKYVVIDTAGMRKRGKVYETTEKYSVLRALSAIERSDVCLIVIDASKGLIEQDK 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 R+ G AVV+ +NKWD + ++D + + I +S T + L Sbjct: 277 RVAGYAHEAGKAVVIVVNKWDAIEKDDKTMRDWEELIRTEMSFLDYAPIVFLSALTKKRL 336 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 L + + K R+ T LN + NP PT + R+ Y TQ+ PP+F+ Sbjct: 337 HTLFEPLNLAAENHKKRVVTHVLNDVIMDAVAMNPTPTHNGQRLRIYYATQVSIQPPTFV 396 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 IF P + SYKRYL NRLR F G PI + ++ Sbjct: 397 IFVNDPELLHFSYKRYLENRLRQAFGFEGTPIHIIART 434 >gi|325268712|ref|ZP_08135341.1| ribosome-associated GTPase EngA [Prevotella multiformis DSM 16608] gi|324988956|gb|EGC20910.1| ribosome-associated GTPase EngA [Prevotella multiformis DSM 16608] Length = 437 Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 150/458 (32%), Positives = 242/458 (52%), Gaps = 30/458 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +AIVG PNVGKSTLFNRL + + A+V + G TRDR YG+ NG F++VDT G Sbjct: 1 MANLVAIVGRPNVGKSTLFNRLTQTRHAIVSDTAGTTRDRQYGKCQWNGREFSVVDTGGW 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + + Q +A EA L+LFL+D++ G+T +D + LR+ +P+++V+NK Sbjct: 61 VVKSDDIFEDAIRKQVLVATEEADLVLFLVDTETGVTDWDEDVAMILRRTKLPVLLVANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D E Y L + V ISA GT +L + +R Sbjct: 121 VDNSGESYQAAEFYKLGLGDPVCISAATGGGTGDLLDL------------------LLER 162 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 +++P E + + R AVVGRPN GKS++IN +G +R + +G TRD Sbjct: 163 LKDAPDETVDQDIP----------RFAVVGRPNAGKSSIINAFIGEDRNIVTEIAGTTRD 212 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ +N + DTAG+R+ +++TE LE +V +S++S+ + I++LDAT E Sbjct: 213 SIYTRYNKFGFDFYLVDTAGIRRKNKVTEDLEFYSVMRSIRSIENSDVCILMLDATRGIE 272 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAI-KNLPQIGDIYINTISGR 359 QD+ I + ++V+ +NKWD+V DK + D AI K + D I S Sbjct: 273 AQDMNIFQLIQRNNKSLVVVVNKWDLVEDKNQKVIDTFENAIRKRMAPFVDFPIIFASAL 332 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 T + + ++ + E+ + K I T+ LN + PP ++ +Y ++KY +Q+ ++ Sbjct: 333 TKQRIFKVLETAKEVYQNRKRHIGTTKLNEVMLPIIEATPPQSVKGKYIKIKYCSQLPNT 392 Query: 420 P-PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 PSF+ + P + E Y+R+L N++R N++L G PI Sbjct: 393 QIPSFVFYANLPQYVKEQYRRFLENKIRENWNLHGCPI 430 >gi|313888319|ref|ZP_07821990.1| ribosome biogenesis GTPase Der [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845722|gb|EFR33112.1| ribosome biogenesis GTPase Der [Peptoniphilus harei ACS-146-V-Sch2b] Length = 446 Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 139/466 (29%), Positives = 240/466 (51%), Gaps = 29/466 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 I+I+G PNVGKSTLFN++V +K+++ + PG+TRDR+Y A F +VDT G+ Sbjct: 6 ISIIGRPNVGKSTLFNKIVGRKVSITEDTPGVTRDRIYQPATWLNYKFLLVDTGGLDLKD 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + Q ++A+ + +++F++D G+ P D I++FLRK +++ NK D++ Sbjct: 66 EDIFMSSIKAQIDIALETSDVVIFVVDGAEGVNPTDREISNFLRKTKTKVVLAVNKYDSK 125 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 I + N Y+ Y L E + ISAE G +L + + P LE +N Sbjct: 126 ITKDNIYDFYELGLGEPIGISAEQGTGVGDL---LDEAVDGLTPVDELEEDDN------- 175 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 +R+ ++G+PNVGKS+L+N L G NR + + G TRDS+ Sbjct: 176 -------------------IRVTLIGKPNVGKSSLLNYLTGENRSIVTNIPGTTRDSIDS 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 +K + DTAG+RK +I +E+ +V +++ ++ ++++DA +QD Sbjct: 217 LIKYKGNEYIFVDTAGLRKKKKIVPGVERYSVIRTLTAIERSNVCVLMIDALEGVTEQDS 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 +IV + A+++A+NKWD + + +++ K + LP + I IS +TG+ + Sbjct: 277 KIVGYAHDNNKAIIIAVNKWDALEKETKTMRNFEKKIREELPFVTYAPIVFISAKTGQRV 336 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 ++ + + +N + RI T LN L K L N PP+ + +L Y +Q+ PP FL Sbjct: 337 NEFLDMIELVNNNYNHRIQTGVLNDILNKAVLMNQPPSDKGKRGKLYYGSQVSVRPPKFL 396 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 + SY RY+ N++R +S G PI + ++ +P K Sbjct: 397 LSVNDKELFHFSYLRYIENQIRDTYSFDGTPIILELKNRVSPRADK 442 >gi|331002253|ref|ZP_08325772.1| GTP-binding protein engA [Lachnospiraceae oral taxon 107 str. F0167] gi|330411347|gb|EGG90763.1| GTP-binding protein engA [Lachnospiraceae oral taxon 107 str. F0167] Length = 443 Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 149/463 (32%), Positives = 250/463 (53%), Gaps = 38/463 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKSTLFN + + +++V + PG+TRDR+Y + F ++DT GI Sbjct: 6 VAIIGRPNVGKSTLFNAIAGEPISIVKDTPGVTRDRIYADCTWLDMNFTLIDTGGIEPDS 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + I QM +Q E+AI A +I+F+ D + G+ D + LRK P+++ NK+D+ Sbjct: 66 SDIILSQMREQAEIAIETADVIVFITDVRQGLVDSDSKVCDMLRKSRKPVVLAVNKVDS- 124 Query: 125 IAQ--RNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 IA+ + YE Y+L + V ISA LG +L + FK Sbjct: 125 IAKFGNDVYEFYNLGIGDPVAISAASRLGIGDLLDAVAVHFK------------------ 166 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 S+G S ++ +P RIA+VG+PNVGKS++INRL G NR++ +G TRD++ Sbjct: 167 --------SKGNESEEDDDRP-RIAIVGKPNVGKSSIINRLTGQNRVIVSDIAGTTRDAI 217 Query: 243 -SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 ++ N K + I DTAG+R+ S++ E +E+ ++ +++ +V + I+++DA + Sbjct: 218 DTVVVNNKQEYVFI-DTAGLRRKSKVKEDIERYSIIRTVTAVERADVVILVIDANEGVTE 276 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVS-DKLNLLQ--DLRTKAIKNLPQIGDIYINTISG 358 QD +I + G +++A+NKWD+V D + + D + + +P I+I+ +SG Sbjct: 277 QDAKIAGIAHDRGKGIIVAVNKWDLVEKDNKTIYEYTDNIKRILSFMPYAEYIFISALSG 336 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 + + L +++ V E L RI T LN + + + PP+ + ++ Y TQ+ Sbjct: 337 QRLQKLFEMIDIVRENQTL---RIQTGVLNEIISEATVMQQPPSDKGKRLKIFYTTQVAV 393 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 PP+F+IF + SY+RYL N++R F G IR + Sbjct: 394 KPPTFVIFVNIKQLMHFSYQRYLENKIREAFGFKGTSIRFIIR 436 >gi|237785456|ref|YP_002906161.1| bifunctional cytidylate kinase/GTP-binding protein [Corynebacterium kroppenstedtii DSM 44385] gi|237758368|gb|ACR17618.1| cytidylate kinase [Corynebacterium kroppenstedtii DSM 44385] Length = 784 Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 143/464 (30%), Positives = 240/464 (51%), Gaps = 40/464 (8%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI- 60 + T+AI+G PNVGKSTL NR + ++ AVV + PG+TRDR+ NG F + DT G Sbjct: 349 LCTVAILGRPNVGKSTLVNRFIGRREAVVEDFPGVTRDRISYLGEWNGRRFWVQDTGGWD 408 Query: 61 --ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVS 118 A G + +IA+ Q E A+ A +I+F++DS+ GIT D + L + P+++V+ Sbjct: 409 PDAKGMHAAIAR----QAEGAMKTADVIVFVVDSQVGITASDEMLARKLHRAEQPVVLVA 464 Query: 119 NKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 NK D+ + E ++L +SA+H G +++ + ++F P+ P + Sbjct: 465 NKFDSPTQYGDLAEFWALGLDNPYPVSAKHGHGAADVLDEVIRLF----PDKPRQ----- 515 Query: 179 KRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 E+IT S P R+A+VG+PNVGKS+L+N++ G +R + +G T Sbjct: 516 --------ESIT----------SGPRRVALVGKPNVGKSSLLNKMTGEDRAVVDDVAGTT 557 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 D V DTAG+RK ++ E ++ ++ E + ++DA+ P Sbjct: 558 VDPVDSLVELDQKTWTFVDTAGIRKKTKKATGHEYYAGLRTRGAIDAAEVVVFIVDASEP 617 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVS-DKLNLLQDLRTKAIKNLPQIGDIYINTIS 357 +QD R++ + ++G A+V+A NKWDMV D+ ++L + ++P + I+ + Sbjct: 618 VTEQDQRVLRMILDSGRALVVAYNKWDMVDEDRRDMLDREIELQLSHIPWARRVNISAKT 677 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 GR L+ M+ LE W R+ T LN+WL+ + PPP R R+ + TQ Sbjct: 678 GRAIHKLEPAMIEALE---SWDGRVPTGQLNTWLRAVIAETPPPMRGGRLPRVLFATQAS 734 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 + PP ++F T + Y+R+L + R F +G P+R+ + Sbjct: 735 TRPPVIVLFTT--GFLEHGYRRFLERKFRETFGFTGSPVRIAVR 776 >gi|169348409|ref|ZP_02866347.1| hypothetical protein CLOSPI_00124 [Clostridium spiroforme DSM 1552] gi|169293878|gb|EDS76011.1| hypothetical protein CLOSPI_00124 [Clostridium spiroforme DSM 1552] Length = 434 Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 142/458 (31%), Positives = 230/458 (50%), Gaps = 30/458 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +AIVG NVGKST+FNR+V +++++V + G+TRDR+Y A F ++DT GI Sbjct: 1 MAGVVAIVGRANVGKSTIFNRIVGERISIVEDIAGVTRDRIYATASWLTKEFRLIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + K+ S Q+ Q E+AI EA LI+F+++ + G+T D + L+K PI++ NK Sbjct: 61 -ELKDASFTTQIKMQAEIAIEEADLIIFVVNGREGVTQEDEYVARLLQKNKKPILLAVNK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D + Y+ YSL + + +S H +G +L E+I+ Sbjct: 120 IDDGAFINDIYDFYSLGIGDPIPVSGSHGIGIGDLLD---------------EVIKKLDF 164 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 EE E+ +R +++GRPNVGKS+L N +LG R++ + G TRD Sbjct: 165 TEEEFAED--------------EIRFSIIGRPNVGKSSLTNSILGEERVIVSNIEGTTRD 210 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 ++ + + DTAGMRK +I E++E+ +V +++ S+ + +V++D Sbjct: 211 AIDTVFEKDGQKYRVIDTAGMRKKGKIYENVEKYSVLRALSSIEKSDVIVVVIDGERGVI 270 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 +QD + G V+L +NKWD+V +Q + + I +S +T Sbjct: 271 EQDKHVAGYAHEAGKGVILVVNKWDLVEKDEKTMQKKEKELRSQFKYLDYARIIFLSAKT 330 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 + + L + E + R+ TS LN L Q NP T ++ Y Q+ P Sbjct: 331 HQRVHQLFPLIQESFENSHKRVQTSVLNDVLVDAQAVNPTTTFNGGRLKIFYANQVSVCP 390 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 P+F++F P + SYKRYL NRLR +F G PI + Sbjct: 391 PTFILFVNDPQYLHFSYKRYLENRLRDSFGFEGTPIHI 428 >gi|85057761|ref|YP_456677.1| GTP-binding protein EngA [Aster yellows witches'-broom phytoplasma AYWB] gi|84789866|gb|ABC65598.1| GTP-binding protein [Aster yellows witches'-broom phytoplasma AYWB] Length = 479 Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 149/481 (30%), Positives = 247/481 (51%), Gaps = 16/481 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M + IAIVG PNVGKS+LFNR++ K+ A+ GITRDR+Y A F ++DT GI Sbjct: 1 MSFKIAIVGRPNVGKSSLFNRIIGKRHAITHQKKGITRDRIYATAHWLTKTFGVIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + K+ +Q+ Q +LA++EA +I+F++D + G+T D + L K P+I+ NK Sbjct: 61 -EIKSTPFLEQIKIQAQLAVDEADVIVFVVDGQIGLTQNDSYLAKLLYKTKKPVILAVNK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKY---PNHPLEMIEN 177 +D N YE Y+L F IS +H +G +L I + + + LE + Sbjct: 120 IDNHNLLFNTYEFYALGFDTPFAISTQHGVGIGDLLDKIVFLLRDASLTSDSSFLEALPT 179 Query: 178 NKR--------NEESPKENITS--EGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYN 227 +K N E P++ + + ++ K +K ++ VVGRPNVGKSTL N LL Sbjct: 180 DKSLQSSLFESNYEIPEKQLLEPEQKQNQEKEENKIIKFCVVGRPNVGKSTLTNSLLASQ 239 Query: 228 RLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCE 287 R++ +G T D+V + +I DTAG++K +I E ++ + +++ ++ + Sbjct: 240 RMIVSDMAGTTTDAVDTFFENDGQKYQIIDTAGIKKRGKIYEQEDKYSFLRALGALEKAD 299 Query: 288 TTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQ 347 ++LDA +QD I + A ++ +NKWD++ N L++ K + Sbjct: 300 IACLVLDAKEGILEQDKNIAGFILENYKACIIIVNKWDLLEKDTNTLKNFEQKIRQEFVF 359 Query: 348 IGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFN-R 406 + + +S L + + + +K++ +TS LN LQ+ L PPT FN + Sbjct: 360 LSYAPVIFLSALKKSRLTQIFAILKRVFNNYKSQFSTSLLNDILQEATLIT-PPTFFNQK 418 Query: 407 YNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNP 466 + +YI Q ++ P FL F P I SY+R+L N+ R N L G P+++ F K+ Sbjct: 419 KAKFQYIFQTKTKAPEFLCFVNDPKYIHFSYERFLKNQFRKNLDLEGTPLKIIFHKKKSN 478 Query: 467 Y 467 + Sbjct: 479 F 479 >gi|134277744|ref|ZP_01764459.1| GTP-binding protein EngA [Burkholderia pseudomallei 305] gi|226197301|ref|ZP_03792878.1| ribosome-associated GTPase EngA [Burkholderia pseudomallei Pakistan 9] gi|134251394|gb|EBA51473.1| GTP-binding protein EngA [Burkholderia pseudomallei 305] gi|225930680|gb|EEH26690.1| ribosome-associated GTPase EngA [Burkholderia pseudomallei Pakistan 9] Length = 433 Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 153/461 (33%), Positives = 234/461 (50%), Gaps = 32/461 (6%) Query: 13 VGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNCSIAKQM 72 +GKSTLFNRL + + A+V + PG+TRDR YG+ + + +VDT G I +M Sbjct: 1 MGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGARPYLVVDTGGFEPVAKDGILHEM 60 Query: 73 NDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQRNFYE 132 QT A+ EA +++F++D + G+ P D +I +LRK PI +V NK + + Sbjct: 61 ARQTRQAVEEADVVVFIVDGRNGLAPQDKSIADYLRKTGRPIFLVVNKAEGMKYTAVASD 120 Query: 133 IYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEESPKENITSE 192 Y L + ISA H G +++ I + + Y P E SE Sbjct: 121 FYELGLGDPRAISAAHGDGVNDM---INEALEVAYAGEPQE-----------------SE 160 Query: 193 GKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHP 252 ++ + I +IA+VGRPNVGKSTL+N L+G +R++ G TRDS+ + + Sbjct: 161 EAAAARGI----KIAIVGRPNVGKSTLVNTLIGEDRVIAFDMPGTTRDSIYVDFERNGKH 216 Query: 253 IEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFN 312 + DTAG+R+ ++ E++E+ +V K++QS+ I+LLDA QD I V Sbjct: 217 YTLIDTAGLRRRGKVFEAIEKFSVVKTLQSISDANVVILLLDARQDISDQDAHIAGFVVE 276 Query: 313 TGHAVVLALNKWDMVSDKLNLLQDLRTKA--IKNLPQIGDIYINTISGRTGEGLDDLMVS 370 G A+V+ +NKWD + + RTKA + L + + IS G+ LM S Sbjct: 277 QGRALVVGVNKWDGLDPHVR----ERTKADLARKLKFLEFAKFHFISAAEKTGIGALMRS 332 Query: 371 VLEINKLWKTRITTSYLNSWL-QKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFLIFCTF 429 V + ++ T L L + + Q P R +L+Y Q +PP +I Sbjct: 333 VDDAYAAAMKKLPTPKLTRALIEAVEFQQPRRRGPVR-PKLRYAHQGGQNPPIIVIHGNA 391 Query: 430 PNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 + + E+YKRYL NR R FSL+G P+R+ F+SS NPY K Sbjct: 392 LDAVTETYKRYLENRFRETFSLTGTPLRIEFRSSTNPYADK 432 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 49/160 (30%), Positives = 84/160 (52%), Gaps = 9/160 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N L+ + + + PG TRD +Y NG + ++DTAG+ Sbjct: 170 IAIVGRPNVGKSTLVNTLIGEDRVIAFDMPGTTRDSIYVDFERNGKHYTLIDTAGLRRRG 229 Query: 65 NC--SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK-- 120 +I K +T +I++A++++ L+D++ I+ D I F+ ++ +++ NK Sbjct: 230 KVFEAIEKFSVVKTLQSISDANVVILLLDARQDISDQDAHIAGFVVEQGRALVVGVNKWD 289 Query: 121 -MDTRIAQRNFYEIYS----LDFKEIVEISAEHDLGTSEL 155 +D + +R ++ L+F + ISA G L Sbjct: 290 GLDPHVRERTKADLARKLKFLEFAKFHFISAAEKTGIGAL 329 >gi|317495375|ref|ZP_07953744.1| ribosome-associated GTPase EngA [Gemella moribillum M424] gi|316914434|gb|EFV35911.1| ribosome-associated GTPase EngA [Gemella moribillum M424] Length = 435 Score = 241 bits (614), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 136/455 (29%), Positives = 241/455 (52%), Gaps = 30/455 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AI+G PNVGKST+FN+++ ++++V + G+TRDR+Y +A F ++DT GI + Sbjct: 5 TVAIIGRPNVGKSTIFNKIIGDRLSIVEDVAGVTRDRIYSKAEWLNYSFFMIDTGGI-EL 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 ++ KQ+ Q ELAI+EA +I+FL + + G+T D + L K + P+++ NK+D Sbjct: 64 EDTPFQKQIRAQAELAIDEADVIIFLTNGRDGVTSDDEEVAKLLYKTDKPVVLAVNKIDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 Y+ YSL F + IS H LG +L + K FK +EE Sbjct: 124 FDMNHMIYDFYSLGFGDPFPISGSHGLGIGDLLDEVCKNFKV--------------LDEE 169 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 E I R +++GRPNVGKS+LIN +LG R++ +G TRD++ Sbjct: 170 EEDEKI---------------RFSLIGRPNVGKSSLINTILGEERVIASDIAGTTRDAID 214 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + + DTAG+RK ++ E+ E+ +V +S++++ + +V+L+A +QD Sbjct: 215 TDFKHNGDEYVVIDTAGIRKRGKVYEACEKYSVLRSLKAIERSDVVLVVLNAEEGIIEQD 274 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 ++ +G V++ +NKWD ++ +++ K + + I +S +T + Sbjct: 275 KKVAGYAHESGKGVIIVVNKWDAIAKDDKTMKEFDEKIRDSFAYLDYAKIVYVSAKTKQR 334 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 + ++ + E + + RI +S LN + NP P + + Y +Q+ +PP+F Sbjct: 335 VFNIFPLIKESYENRQRRIQSSTLNEIVVDAVSMNPTPQDKGKRLNIFYASQVAINPPTF 394 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 + F +P + SY+R+L NR+R +F+ G PI++ Sbjct: 395 VFFVNYPELMHFSYERFLENRIRDSFNFEGTPIKL 429 >gi|258647985|ref|ZP_05735454.1| ribosome-associated GTPase EngA [Prevotella tannerae ATCC 51259] gi|260851826|gb|EEX71695.1| ribosome-associated GTPase EngA [Prevotella tannerae ATCC 51259] Length = 437 Score = 241 bits (614), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 154/456 (33%), Positives = 235/456 (51%), Gaps = 30/456 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNRL + A+V G TRDR YG+ G IF+IVDT G Sbjct: 5 VAIVGRPNVGKSTLFNRLTGTRQAIVSEEAGTTRDRQYGKCEWGGQIFSIVDTGGWVVNS 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + ++ Q +A EA LILFL+D++ GIT D + LR+ NIP+I+ +NK++ Sbjct: 65 DDIFEGEIRKQVLVATEEADLILFLVDNQTGITDLDEDVAMILRQANIPVILCANKIENN 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 I + N E Y L E +SA GT +L I IE ++ Sbjct: 125 IDRYNASEFYKLGLGEPNCLSAITGSGTGDLLDTI---------------IERLGADQTE 169 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 +EN NI A+VGRPN GKS+LIN +G R + +G TRDS+ Sbjct: 170 EEEN----------NIP---HFAIVGRPNAGKSSLINAFIGEERNIVTDIAGTTRDSILT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 ++ + DTAG+RK ++ E LE +V +S++++ + I+L+DAT E QD+ Sbjct: 217 RYDKFGFDFYLVDTAGIRKKGKVNEDLEFYSVMRSIRAIEHSDVCILLIDATRGIESQDM 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKN-LPQIGDIYINTISGRTGEG 363 I + ++V+A+NKWD+ +K + IK+ + D I S T + Sbjct: 277 NIFKVIQKNNKSLVVAINKWDIAENKSQEAIKHFIEVIKSRMAPFDDFPIVFCSALTKQR 336 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP-PS 422 + ++ + E+ K I TS LN L PPP+I ++ ++KY +Q+ + PS Sbjct: 337 IYKVLETAKEVYVQRKMHINTSKLNEELLPLIEAYPPPSIKGKFIKIKYCSQLPDTQIPS 396 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 F+ + P + + YKR+L N++R ++ SG PI + Sbjct: 397 FVFYANLPQYVKDPYKRFLENKIREKWNFSGTPINI 432 >gi|298373119|ref|ZP_06983109.1| ribosome-associated GTPase EngA [Bacteroidetes oral taxon 274 str. F0058] gi|298276023|gb|EFI17574.1| ribosome-associated GTPase EngA [Bacteroidetes oral taxon 274 str. F0058] Length = 438 Score = 241 bits (614), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 148/455 (32%), Positives = 241/455 (52%), Gaps = 33/455 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNRL K + A+V + G TRDR YG+ NG F+++DT G G Sbjct: 5 VAIVGRPNVGKSTLFNRLTKSRRAIVNDEAGTTRDRHYGKVEWNGKEFSVIDTGGWVVGS 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +++N Q +AI EA +ILF++D +G+T D + LRK +I+V+NK+DT Sbjct: 65 EDIFEEEINRQVSIAIEEADVILFVVDVLSGVTDLDMFVAQVLRKSGKNVIVVANKVDTF 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 Q E YSL + +S+ + LG+ +L + F Sbjct: 125 DLQYQATEFYSLGLGDPFILSSVNGLGSGDLLDEVLNRF--------------------- 163 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 PK +E N+ ++AVVGRPN GKS+L+N L NR + +G TRDS+ Sbjct: 164 PKNEKEAE------NLDDLPKLAVVGRPNAGKSSLVNAFLDDNRNIVTEIAGTTRDSIYT 217 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 +N + + DTAG+RK +++ E +E +V ++++++ + ++++DA E QDL Sbjct: 218 RYNKFGYDFYLVDTAGIRKKAKVNEDVEYYSVIRAIRAIENSDVCVLMIDAERGIESQDL 277 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRT--KAIKN-LPQIGDIYINTISGRTG 361 I + +V+ +NKWD++ +K N +D++T AI+ D I S Sbjct: 278 NIFSLIQKNKKGLVVCVNKWDLIENKSN--KDVKTFENAIRERFAPFTDFPIVFTSVINK 335 Query: 362 EGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQI-QSSP 420 + + ++ + +++ + +I+T+ LN + PPP I +Y ++KYITQ+ + Sbjct: 336 QRIFKVIETAMQVYENKTRKISTNKLNEFFLPLIENYPPPAIKGKYVKIKYITQLPDTQV 395 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIP 455 P+F+ F P I E Y R+L N+LR + +G P Sbjct: 396 PTFIFFTNLPQYIREPYFRFLENKLRSQWQFTGTP 430 >gi|167893952|ref|ZP_02481354.1| GTP-binding protein EngA [Burkholderia pseudomallei 7894] Length = 454 Score = 241 bits (614), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 153/461 (33%), Positives = 234/461 (50%), Gaps = 32/461 (6%) Query: 13 VGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNCSIAKQM 72 +GKSTLFNRL + + A+V + PG+TRDR YG+ + + +VDT G I +M Sbjct: 1 MGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGARPYLVVDTGGFEPVAKDGILHEM 60 Query: 73 NDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQRNFYE 132 QT A+ EA +++F++D + G+ P D +I +LRK PI +V NK + + Sbjct: 61 ARQTRQAVEEADVVVFIVDGRNGLAPQDKSIADYLRKTGRPIFLVVNKAEGMKYTAVASD 120 Query: 133 IYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEESPKENITSE 192 Y L + ISA H G +++ I + + Y P E SE Sbjct: 121 FYELGLGDPRAISAAHGDGVNDM---INEALEVAYAGEPQE-----------------SE 160 Query: 193 GKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHP 252 ++ + I +IA+VGRPNVGKSTL+N L+G +R++ G TRDS+ + + Sbjct: 161 EAAAARGI----KIAIVGRPNVGKSTLVNTLIGEDRVIAFDMPGTTRDSIYVDFERNGKH 216 Query: 253 IEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFN 312 + DTAG+R+ ++ E++E+ +V K++QS+ I+LLDA QD I V Sbjct: 217 YTLIDTAGLRRRGKVFEAIEKFSVVKTLQSISDANVVILLLDARQDISDQDAHIAGFVVE 276 Query: 313 TGHAVVLALNKWDMVSDKLNLLQDLRTKA--IKNLPQIGDIYINTISGRTGEGLDDLMVS 370 G A+V+ +NKWD + + RTKA + L + + IS G+ LM S Sbjct: 277 QGRALVVGVNKWDGLDPHVR----ERTKADLARKLKFLEFAKFHFISAAEKTGIGALMRS 332 Query: 371 VLEINKLWKTRITTSYLNSWL-QKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFLIFCTF 429 V + ++ T L L + + Q P R +L+Y Q +PP +I Sbjct: 333 VDDAYAAAMKKLPTPKLTRALIEAVEFQQPRRRGPVR-PKLRYAHQGGQNPPIIVIHGNA 391 Query: 430 PNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 + + E+YKRYL NR R FSL+G P+R+ F+SS NPY K Sbjct: 392 LDAVTETYKRYLENRFRETFSLTGTPLRIEFRSSTNPYADK 432 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 49/160 (30%), Positives = 84/160 (52%), Gaps = 9/160 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N L+ + + + PG TRD +Y NG + ++DTAG+ Sbjct: 170 IAIVGRPNVGKSTLVNTLIGEDRVIAFDMPGTTRDSIYVDFERNGKHYTLIDTAGLRRRG 229 Query: 65 NC--SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK-- 120 +I K +T +I++A++++ L+D++ I+ D I F+ ++ +++ NK Sbjct: 230 KVFEAIEKFSVVKTLQSISDANVVILLLDARQDISDQDAHIAGFVVEQGRALVVGVNKWD 289 Query: 121 -MDTRIAQRNFYEIYS----LDFKEIVEISAEHDLGTSEL 155 +D + +R ++ L+F + ISA G L Sbjct: 290 GLDPHVRERTKADLARKLKFLEFAKFHFISAAEKTGIGAL 329 >gi|222110307|ref|YP_002552571.1| gtp-binding protein enga [Acidovorax ebreus TPSY] gi|254783151|sp|B9MFY0|DER_ACIET RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|221729751|gb|ACM32571.1| Miro domain protein [Acidovorax ebreus TPSY] Length = 447 Score = 241 bits (614), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 156/471 (33%), Positives = 247/471 (52%), Gaps = 36/471 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTLFNRL K + A+V + G+TRDR YG + ++DT G Sbjct: 5 IALVGRPNVGKSTLFNRLTKSRDAIVADFAGLTRDRHYGNGRQGKHEYIVIDTGGFEPDA 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + I ++M QT+ A+ EA +++F++D + G++ DH I ++LR+ P ++ NK + Sbjct: 65 SSGIYREMARQTQQAVAEADVVVFVVDVRGGLSAQDHDIANYLRRLGKPCVLAGNKAEGM 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + E Y L E+ +SA H G L + K PL + Sbjct: 125 QDSMHLAEFYELGLGEVHPVSAAHGQGVRSLVDLALK---------PLAL---------- 165 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 I E ++ KN+ +R+AV GRPNVGKSTLIN LG RL+ G TRD++S+ Sbjct: 166 --PEIEEEDAAAEKNV---IRLAVAGRPNVGKSTLINTWLGEERLVAFDMPGTTRDAISV 220 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + E+ DTAG+R+ ++ E++E+ +V K++Q++ + ++LLDAT QD Sbjct: 221 PFERNGQKFELIDTAGLRRKGKVFEAIEKFSVVKTLQAIESANVVLLLLDATQGVTDQDA 280 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSD----KLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 I + +G AVV+A+NKWD V D +L + R +K P ++ IS + Sbjct: 281 HIAGYILESGRAVVIAVNKWDAVDDYGRQQLERSIETRLSFLKFAP------LHFISAKK 334 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKT-QLQNPPPTIFNRYNRLKYITQIQSS 419 +G+ L S+++ K ++ T L LQ+ Q Q+P + R +++Y Q + Sbjct: 335 RQGIGPLWSSIIQAYKSANRKMPTPVLTRLLQEAVQFQSPKRSGMFR-PKMRYAHQGGMN 393 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 PP +I + ++YKR+L R R F L G P+R+ ++S NPY K Sbjct: 394 PPVIVIHGNSLEHVTDAYKRFLEARFRKEFDLVGTPLRIEMKTSSNPYTDK 444 Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 59/199 (29%), Positives = 94/199 (47%), Gaps = 12/199 (6%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + +A+ G PNVGKSTL N + ++ V + PG TRD + NG F ++DTAG+ Sbjct: 179 VIRLAVAGRPNVGKSTLINTWLGEERLVAFDMPGTTRDAISVPFERNGQKFELIDTAGLR 238 Query: 62 DGKNC--SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 +I K +T AI A+++L L+D+ G+T D I ++ + ++I N Sbjct: 239 RKGKVFEAIEKFSVVKTLQAIESANVVLLLLDATQGVTDQDAHIAGYILESGRAVVIAVN 298 Query: 120 KMDT------RIAQRNFYEIYS-LDFKEIVEISAEHDLGTSELHSVIFKIFK---QKYPN 169 K D + +R+ S L F + ISA+ G L S I + +K +K P Sbjct: 299 KWDAVDDYGRQQLERSIETRLSFLKFAPLHFISAKKRQGIGPLWSSIIQAYKSANRKMPT 358 Query: 170 HPLEMIENNKRNEESPKEN 188 L + +SPK + Sbjct: 359 PVLTRLLQEAVQFQSPKRS 377 >gi|166030917|ref|ZP_02233746.1| hypothetical protein DORFOR_00598 [Dorea formicigenerans ATCC 27755] gi|166029184|gb|EDR47941.1| hypothetical protein DORFOR_00598 [Dorea formicigenerans ATCC 27755] Length = 442 Score = 241 bits (614), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 140/465 (30%), Positives = 240/465 (51%), Gaps = 35/465 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFN L +K+++V + PG+TRDR+Y F ++DT GI Sbjct: 6 VAIVGRPNVGKSTLFNALAGEKISIVKDTPGVTRDRIYADVSWLDKDFTLIDTGGIEPES 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 I QM +Q ++AI+ + +I+F+ D K G+ D + LR+ P+I+V NK+D Sbjct: 66 KDIILSQMREQAQIAIDTSDVIIFITDVKQGLVDSDSKVADMLRRSGKPVILVVNKVDNF 125 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + YE Y+L + V ISA LG ++ + + +P H E E+ Sbjct: 126 DKYMADTYEFYNLGIGDPVPISASSRLGLGDMLDKVI----EHFPEHAGEEEED------ 175 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 S+P R+A+VG+PNVGKS++IN+LLG R++ +G TRD++ Sbjct: 176 -----------------SRP-RVAIVGKPNVGKSSIINKLLGEQRVIVSDIAGTTRDAID 217 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 DTAG+R+ ++I E LE+ ++ +++ +V + +V++DAT +QD Sbjct: 218 TEIVHNGKEYVFIDTAGLRRKNKIKEELERYSIIRTVTAVERADVVLVVIDATQGVTEQD 277 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRT---KAIKNLPQIGDIYINTISGRT 360 ++ G V++ +NKWD + +++ + + +P +Y++ ++G+ Sbjct: 278 AKVAGIAHERGKGVIIVVNKWDAIEKNDKTMREYENEVRRVLSFMPYAEIMYVSAVTGQR 337 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 + D++ V+E L R+ T LN L + PP+ + ++ Y+TQ+ P Sbjct: 338 LPKMFDMIDMVIENQTL---RVATGVLNEILMEATAMQQPPSDKGKRLKIYYMTQVAVKP 394 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 PSF+IF + SY+RYL N++R +F G ++ + K Sbjct: 395 PSFVIFVNDKELMHFSYQRYLENKIRESFGFKGTSLKFFVRERKE 439 >gi|330874711|gb|EGH08860.1| GTP-binding protein Der [Pseudomonas syringae pv. glycinea str. race 4] Length = 440 Score = 241 bits (614), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 147/446 (32%), Positives = 232/446 (52%), Gaps = 10/446 (2%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ IA+VG PNVGKST+FNRL + + A+VG+ G+TRDR YG+A G + ++DT GI Sbjct: 1 MVPVIALVGRPNVGKSTMFNRLTRTRDAIVGDLSGLTRDRQYGEAKWQGRSYILIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + G + ++M +Q+ LAI EA ++LFL+D++AG T D I LRK+N +V+NK Sbjct: 61 S-GDEHGMDEKMAEQSLLAIEEADVVLFLVDARAGYTAADQMIGEHLRKRNKRSYVVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D E + + + ++ H G S++ + + F + Sbjct: 120 IDNIDENLARAEFSPMGLGDAIPVAGAHGRGISQMLEIALREFPKDEDELEEGEEVEEVA 179 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 + K K +K IA++GRPNVGKSTL+NR+LG +R++ + G TRD Sbjct: 180 EGQEAKRIPGPSEKDGIK-------IAIIGRPNVGKSTLVNRMLGEDRVIVYDEPGTTRD 232 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ I + + DTAG+RK +I E +E+ +V K++Q+++ I ++DA Sbjct: 233 SIYIPFERNEEKYTLIDTAGVRKRGKIHEEVEKFSVVKTLQAIKDANVVIFVMDAREGVV 292 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 DL ++ G A+V+ALNKWD ++ + + DI+ IS Sbjct: 293 DHDLNLLGFALEAGRALVIALNKWDGMTPGERDFVKIELERRLFFVDFADIHF--ISAMH 350 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G G+ +L SV K TR TS L L+ ++ PP + +R +L+Y ++P Sbjct: 351 GTGVGNLYQSVQNSFKSAVTRWPTSRLTQILEDAVSEHAPPMVGSRRIKLRYAHLGGANP 410 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLR 446 P +I K+P+SY RYL N R Sbjct: 411 PLIVIHGNQVEKVPKSYVRYLENTYR 436 >gi|320353154|ref|YP_004194493.1| ribosome-associated GTPase EngA [Desulfobulbus propionicus DSM 2032] gi|320121656|gb|ADW17202.1| ribosome-associated GTPase EngA [Desulfobulbus propionicus DSM 2032] Length = 445 Score = 241 bits (614), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 143/463 (30%), Positives = 238/463 (51%), Gaps = 37/463 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A++G PNVGKSTLFNR+VK++ A+V PG+TRDR Y + F +VDT GI D + Sbjct: 9 VALIGRPNVGKSTLFNRMVKRRDALVDPTPGVTRDRHYARVSWEEHPFILVDTGGI-DDE 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 + +I + Q LAI EA +I FL+D + G+TP D I LR+ + + NK+D+ Sbjct: 68 DDTITNHIRHQALLAIEEADVIFFLMDGREGLTPSDIEIVDLLRRTEKKVFFIVNKIDSP 127 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 I + L ++ +S +H G L + L +E E Sbjct: 128 EIEDALLAPFWELGVDQLWALSGDHGYGYQTLMEGL------------LPYLEKTDLQTE 175 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 P +RIA +GRPNVGKS+++N ++G R++ +G TRDSV Sbjct: 176 LPDNT---------------MRIAFLGRPNVGKSSMVNAIIGQERMVVSDIAGTTRDSVD 220 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + + DTAG+R+ + T+ LE+ +V K+++++ C+ +VL+DA +QD Sbjct: 221 TLVTRDPYTYLLIDTAGIRRKGKTTDKLEKFSVLKALKALGRCDIALVLIDAEEGITEQD 280 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSD----KLNLLQDLRTKAIKNLPQIGDIYINTISGR 359 +++ + G A+++ +NKWD++ D + L+Q++ AIK +P + +S Sbjct: 281 TKVIGYTQDQGRALIVLINKWDLIKDDKKRQEQLMQEVEI-AIKFIPFAP---VLKVSAL 336 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 TG G+ L + ++++ + R T+ LN L ++ PP R + Y Q+ ++ Sbjct: 337 TGTGIKRLFPEIGKVHRQFHQRFPTAALNRLLADAVARHEPPYYHGRRLKFYYTAQLGTA 396 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 PP F + + P I SY+RYL N R L +P+R+ F+ Sbjct: 397 PPLFAVVASDPKGIHFSYQRYLTNCFREGLGLDKVPVRLLFRE 439 >gi|330719101|ref|ZP_08313701.1| GTP-binding protein Der [Leuconostoc fallax KCTC 3537] Length = 436 Score = 241 bits (614), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 138/459 (30%), Positives = 234/459 (50%), Gaps = 31/459 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST+FNR+ +++A+V + PG+TRDRLY A F I+DT GI G Sbjct: 6 VAIVGRPNVGKSTIFNRMAGERIAIVEDLPGVTRDRLYASADWLNYDFKIIDTGGIEIG- 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N ++ Q E+A+ EA +I+ + + G+T D + L K + P+++ NK+D Sbjct: 65 NEPFLSEIRGQVEIALEEADVIVMVASGREGLTEADEVVAKLLYKTDKPVVLAINKVDNP 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + YE Y+L + IS H LG +L I K F Sbjct: 125 EMRADIYEFYALGLGDPFPISGSHGLGLGDLLDEIVKHF--------------------- 163 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P E E + +R +++GRPNVGKS+++N +LG R++ G TRD++ Sbjct: 164 PDEAAEQEDDA--------IRFSIIGRPNVGKSSIVNAILGEERVIVSDIEGTTRDAIDS 215 Query: 245 SW-NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + + DTAGMRK ++ E+ E+ +V +++++V ++++DA +QD Sbjct: 216 RFMTADGDEFVMVDTAGMRKRGKVYENTEKYSVLRALKAVDESNVILMVIDAEAGIREQD 275 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 + G ++++ +NKWD + +Q+ + I +S +TG+ Sbjct: 276 KHVAGFAHEAGRSMIIVVNKWDAIDKNTKTMQEFEETIRTEFKFLDYAPIVFVSAKTGQR 335 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 LD L + +++ + RI++S LN + NP P+ R R+ Y TQ+ PP+F Sbjct: 336 LDRLPQLIKDVDANHRKRISSSTLNDVIMDAIAVNPTPSDNGRRLRVYYATQVAIQPPTF 395 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 +IF + SY+R+L N++R +F SG PI++ ++ Sbjct: 396 VIFVNDVELMHFSYERFLENQIRDSFDFSGTPIKLIIRA 434 >gi|319442278|ref|ZP_07991434.1| bifunctional cytidylate kinase/GTPase Der [Corynebacterium variabile DSM 44702] Length = 567 Score = 241 bits (614), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 151/461 (32%), Positives = 244/461 (52%), Gaps = 38/461 (8%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI- 60 + T+AIVG PNVGKSTL NR + ++ AVV + PG+TRDR+ G F + DT G Sbjct: 129 LCTVAIVGRPNVGKSTLVNRFIGRREAVVEDFPGVTRDRISYIGDWGGRRFWVQDTGGWD 188 Query: 61 --ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVS 118 A G + +IA+Q E A+ A +I+F++D+K GIT D I L++ IP+++V+ Sbjct: 189 PDAKGIHGAIARQ----AETAMATADVIVFVVDTKVGITATDEIIARRLQRSEIPVVLVA 244 Query: 119 NKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 NK D+ + E +SL + +SA+H G +++ + F Sbjct: 245 NKFDSDSQYGDMAEFWSLGLGDPYPVSAQHGRGAADVLDQVLASFP-------------- 290 Query: 179 KRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 E+P+E +S+ ++ P R+A+VGRPNVGKS+L+N++ G +R + + +G T Sbjct: 291 ----ETPRE-------TSI--VAGPRRVALVGRPNVGKSSLLNKITGEDRSVVDNVAGTT 337 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 D V + DTAG+RK ++ E ++ ++ + E I L+DA+ P Sbjct: 338 VDPVDSVVELEQQMWRFVDTAGIRKKTKTARGHEFYASLRTRAAIDSAEVAIFLVDASEP 397 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 +QD R++ + ++G A+V+A NKWD+V + + +DL + + L + IS Sbjct: 398 IAEQDQRVLRMILDSGRALVVAYNKWDLVDE--DRREDLEREIDQQLAHVPWARRVNISA 455 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 +TG L L +++E + W RI T LN+WL+ Q PPP R R+ + TQ S Sbjct: 456 KTGRALQRLEPAMIEALESWDQRIPTGQLNTWLRAVIAQTPPPMRGGRLPRVLFATQAAS 515 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 PP ++F T + Y+R+L RLR +F G P+R+ Sbjct: 516 KPPVIVLFTT--GFLEHGYRRFLERRLRESFGFEGSPVRIA 554 >gi|325000201|ref|ZP_08121313.1| GTP-binding protein Der [Pseudonocardia sp. P1] Length = 441 Score = 241 bits (614), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 138/463 (29%), Positives = 235/463 (50%), Gaps = 40/463 (8%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI--- 60 T+A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ + NG F ++DT G Sbjct: 6 TLAVVGRPNVGKSTLVNRMLGRREAVVQDVPGVTRDRVVYDGLWNGRRFKLMDTGGWEPD 65 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 ADG +A+Q E A+ A +L ++D+ G T D A LR+ +P+++ + K Sbjct: 66 ADGLQGFVAQQ----AETAMRTADAVLLVVDASVGATATDQAAARVLRRAKVPVMLAATK 121 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D + E++ L + +S H G+ +L I ++ Sbjct: 122 VDDDRLTSDTAELWRLGLGQPHPVSGLHGRGSGDLLDAILEVLP---------------- 165 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 E+P+++ + G + P R+A+VG+PNVGKS+L+N+L G R + +G T D Sbjct: 166 --ETPRDDFGASG-------AGPRRVALVGKPNVGKSSLLNKLAGEERSVVHDVAGTTVD 216 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 V + DTAG+RK ++ +E ++ ++ E +VL+DA+ P Sbjct: 217 PVDSLVDLDGEVFRFVDTAGLRKRVKMASGMEYYASLRTSSAIEAAEVALVLIDASQPIA 276 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSD--KLNLLQDLRTKAIKNLPQIGDIYINTISG 358 +QD R++ V G A+V+ NKWD+V + + L ++L I ++ + ++ ++G Sbjct: 277 EQDQRVLTMVAEAGRALVILFNKWDLVDEERRHQLTRELERDLI-SVRWAERVNVSALTG 335 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 R + + + LE W TR+ T LN WL PPP + ++ + TQ Q+ Sbjct: 336 RATQRVAPALRRALES---WDTRVPTGRLNQWLSDLVAATPPPVRGGKQPKIMFATQAQT 392 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 PP+F++F + + Y+R++ RLR F G PIR+ + Sbjct: 393 RPPTFVLFSS--GFLEAGYRRFVERRLREEFGFGGSPIRVSVR 433 >gi|241889489|ref|ZP_04776788.1| ribosome-associated GTPase EngA [Gemella haemolysans ATCC 10379] gi|241863796|gb|EER68179.1| ribosome-associated GTPase EngA [Gemella haemolysans ATCC 10379] Length = 435 Score = 241 bits (614), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 133/455 (29%), Positives = 244/455 (53%), Gaps = 30/455 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AI+G PNVGKST+FN+++ ++++V + G+TRDR+Y +A F ++DT GI + Sbjct: 5 TVAIIGRPNVGKSTIFNKIIGDRLSIVEDVAGVTRDRIYSKAEWLNYSFFMIDTGGI-EL 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 ++ KQ+ Q ELAI+EA +I+FL + + G+T D + L K + P+++ NK+D Sbjct: 64 EDTPFQKQIRAQAELAIDEADVIIFLTNGRDGVTSDDEEVARLLYKTDKPVVLAVNKIDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 Y+ YSL F + IS H LG +L + K FK ++E + +++ Sbjct: 124 FDMNHMIYDFYSLGFGDPFPISGSHGLGIGDLLDEVCKNFK---------VLEEEEEDDK 174 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 +R +++GRPNVGKS+LIN +LG R++ +G TRD++ Sbjct: 175 --------------------IRFSLIGRPNVGKSSLINTILGEERVIASDIAGTTRDAID 214 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + + DTAG+RK ++ ES E+ +V +S++++ + +V+L+A +QD Sbjct: 215 TDFKHNGDEYVVIDTAGIRKRGKVYESCEKYSVLRSLKAIERSDVVLVVLNAEEGIIEQD 274 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 ++ +G V++ +NKWD ++ +++ K + + I +S +T + Sbjct: 275 KKVAGYAHESGKGVIIVVNKWDAIAKDDKTMKEFDEKIRDSFAYLDYAKIIYVSAKTKQR 334 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 + ++ + E + + R+ +S LN + NP P + + Y +Q+ +PP+F Sbjct: 335 VFNIFPLIKESYENRQRRVQSSTLNEIVVDAVSMNPTPQDKGKRLNIFYASQVAINPPTF 394 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 + F +P + SY+R+L NR+R +F+ G PI++ Sbjct: 395 VFFVNYPELMHFSYERFLENRIRDSFNFEGTPIKL 429 >gi|238064002|ref|ZP_04608711.1| small GTP-binding protein [Micromonospora sp. ATCC 39149] gi|237885813|gb|EEP74641.1| small GTP-binding protein [Micromonospora sp. ATCC 39149] Length = 466 Score = 240 bits (613), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 152/462 (32%), Positives = 233/462 (50%), Gaps = 35/462 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI-ADG 63 +A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ A +G F +VDT G D Sbjct: 26 VAVVGRPNVGKSTLVNRIIGRRQAVVEDIPGVTRDRVPYDAQWSGRAFTVVDTGGWEPDA 85 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 K+ + A + +A A ++LF++D+ G T D A LR+ P+I+V+NK D Sbjct: 86 KDRAAAIAAQAEIAVAT--ADVVLFVVDAMVGSTDVDEAAVKMLRRSAKPVILVANKADN 143 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + ++SL E +SA H G+ +L I Q P P ++EN R Sbjct: 144 ATIEMESTSLWSLGLGEPYPVSALHGRGSGDLLDKIL----QALPEAPA-IVENRPRG-- 196 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 P R+A+VGRPNVGKS+L+NR G R + S +G T D V Sbjct: 197 -------------------PRRVALVGRPNVGKSSLLNRFSGEERAVVDSVAGTTVDPVD 237 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 ++ DTAG+RK E ++ ++ E +VLLD++ P +QD Sbjct: 238 SLVEIGGETWQLVDTAGLRKRVGKASGTEYYASLRTASAIEAAEVAVVLLDSSEPISEQD 297 Query: 304 LRIVDSVFNTGHAVVLALNKWDMV-SDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 RI+ V G A+V+A NKWD+V D+ L + ++ +P + IN +S +TG Sbjct: 298 QRILSMVTEAGRALVIAFNKWDLVDGDRRYYLDKEIERELRRIPWA--LRIN-LSAKTGR 354 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 +D L S+ + W+TR+ T+ LNSWL P P R ++ + TQ +PP Sbjct: 355 AVDKLAPSLRKALASWETRVPTAQLNSWLTALVQATPHPVRGGRAPKILFATQAGVAPPR 414 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 F++F T P + Y+R++ +LR F G P+ + + K Sbjct: 415 FVLFTTAP--LDAGYQRFVERKLREEFGFEGSPVEISVRPRK 454 >gi|134301774|ref|YP_001121742.1| GTP-binding protein EngA [Francisella tularensis subsp. tularensis WY96-3418] gi|166198717|sp|A4IXH0|DER_FRATW RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|134049551|gb|ABO46622.1| GTP-binding protein [Francisella tularensis subsp. tularensis WY96-3418] Length = 465 Score = 240 bits (613), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 159/472 (33%), Positives = 249/472 (52%), Gaps = 25/472 (5%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M + +AIVG NVGKSTLFN L A+V + G+TRDR YGQA + + + +VDT GI Sbjct: 1 MSFLVAIVGRANVGKSTLFNVLTNSHDALVFDFEGVTRDRQYGQAKYDDLDYLVVDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 +D K+ + M Q+++AI+EA+L+ F++D ++G+T D + S LR+K+ +++V NK Sbjct: 61 SD-KDVGFDEFMAKQSQIAIDEANLVFFVVDGRSGLTTGDEYVASLLRQKDKKVVVVVNK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D + E YS F ++ ISA H T +L K+ PL Sbjct: 120 VDGTDEEAAMAEFYSFGFDKVFAISAAHRRNTQKL--------VDKFLKKPL-------- 163 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 NE T E K ++ + +++GRPNVGKSTL NR+LG +R++ G T D Sbjct: 164 NEYYQDYTQTQEHKEQQRH---GIHFSLIGRPNVGKSTLTNRMLGEDRVVVFDMPGTTID 220 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 SVSI + I DTAG+RK ++ ++LE+ +V K++Q+++ + ++DA Sbjct: 221 SVSIPFERHGQKYTIVDTAGVRKRGKVKQTLEKFSVIKTLQAIQDSNVVVAVVDARQGIS 280 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVS--DKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 QDL ++ G A+VLA+NKWD ++ D++ + QDL+ K L DI+ IS Sbjct: 281 DQDLSLIHFAIKNGRALVLAVNKWDGMTEEDRIQVKQDLKRKLF-FLQDYVDIHF--ISA 337 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 G + + S+ +ITT+ +Q + PP + +LKY Sbjct: 338 LHGTNVGHVFESIDTAYACANKKITTADATRLMQLAVEAHSPPMVGKFRIKLKYAHVGGH 397 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I +++P SYKRYL N R G PI F+ S+NP+ + Sbjct: 398 NPPVIVIHGNQVSRLPNSYKRYLENFFREALDFRGTPIVFEFKQSENPFADR 449 >gi|153816157|ref|ZP_01968825.1| hypothetical protein RUMTOR_02405 [Ruminococcus torques ATCC 27756] gi|317500477|ref|ZP_07958701.1| GTP-binding protein engA [Lachnospiraceae bacterium 8_1_57FAA] gi|331089422|ref|ZP_08338321.1| GTP-binding protein engA [Lachnospiraceae bacterium 3_1_46FAA] gi|145846492|gb|EDK23410.1| hypothetical protein RUMTOR_02405 [Ruminococcus torques ATCC 27756] gi|316898232|gb|EFV20279.1| GTP-binding protein engA [Lachnospiraceae bacterium 8_1_57FAA] gi|330404790|gb|EGG84328.1| GTP-binding protein engA [Lachnospiraceae bacterium 3_1_46FAA] Length = 441 Score = 240 bits (613), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 146/467 (31%), Positives = 244/467 (52%), Gaps = 41/467 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFN L + +++V + PG+TRDR+Y F ++DT GI Sbjct: 6 VAIVGRPNVGKSTLFNALAGEMISIVKDTPGVTRDRIYADVTWLDKEFTMIDTGGIEPDS 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 I QM +Q ++AI+ A +I+F+ D K G+ D + LR+ P+++V NK+D Sbjct: 66 KDIILSQMREQAQIAIDTADVIIFITDVKQGLVDADSKVADMLRRSGKPVVLVVNKVDNF 125 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + YE Y+L + V ISA LG ++ I + +P Sbjct: 126 DKYMADVYEFYNLGIGDPVPISAASRLGLGDM----LDIVAENFP--------------- 166 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV- 242 EG + ++ +P R+A+VG+PNVGKS++IN+LLG NR++ +G TRD++ Sbjct: 167 --------EGSAQAEDDDRP-RVAIVGKPNVGKSSIINKLLGENRVIVSDIAGTTRDAID 217 Query: 243 -SISWNWKNHPIEIF-DTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 I N K + IF DTAG+R+ ++I E LE+ ++ +++ +V + ++++DAT Sbjct: 218 TEILHNGKEY---IFIDTAGLRRKNKIKEELERYSIIRTVTAVERADVVLMVIDATEGVT 274 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRT---KAIKNLPQIGDIYINTIS 357 +QD +I G V++ +NKWD + +++ + + + +P +Y++ + Sbjct: 275 EQDAKIAGIAHERGKGVIIVVNKWDAIEKNDRTMREYESDIRQVLSYMPYAEIMYVSAAT 334 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 G+ L D++ V+E L RI T LN + + PP+ + +L YITQ+ Sbjct: 335 GQRLNRLYDMIDMVIENQTL---RIATGVLNEIMTEAVAMQQPPSDKGKRLKLYYITQVA 391 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 PP+F+IF + SY RYL N++R F G ++ + K Sbjct: 392 VKPPTFVIFVNDKELMHFSYTRYLENKIREAFGFRGTSLKFFIRERK 438 >gi|325661996|ref|ZP_08150615.1| GTP-binding protein engA [Lachnospiraceae bacterium 4_1_37FAA] gi|331085846|ref|ZP_08334929.1| GTP-binding protein engA [Lachnospiraceae bacterium 9_1_43BFAA] gi|325471659|gb|EGC74878.1| GTP-binding protein engA [Lachnospiraceae bacterium 4_1_37FAA] gi|330406769|gb|EGG86274.1| GTP-binding protein engA [Lachnospiraceae bacterium 9_1_43BFAA] Length = 442 Score = 240 bits (613), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 139/465 (29%), Positives = 238/465 (51%), Gaps = 35/465 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFN L + +++V + PG+TRDR+Y + F ++DT GI Sbjct: 6 VAIVGRPNVGKSTLFNALAGEMISIVKDTPGVTRDRIYAEVTWLDREFTLIDTGGIEPDS 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 I QM +Q ++AI+ A +I+F+ D + G+ D + LR+ P+++V NK+D+ Sbjct: 66 KDIILAQMREQAQIAIDTADVIIFITDVRQGLQDSDSKVADMLRRSGKPVVLVVNKVDSF 125 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + YE Y+L + + ISA LG ++ + +P H Sbjct: 126 QKLMADVYEFYNLGIGDPIPISASSRLGLGDMLDAV----AAHFPEH------------- 168 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 + + +P RIA+VG+PNVGKS++IN+L+G NR++ + +G TRD++ Sbjct: 169 ----------SAEEEEDERP-RIAIVGKPNVGKSSIINKLVGENRVIVSNIAGTTRDAID 217 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 W DTAG+R+ ++I E LE+ ++ +++ +V + +V++DA +QD Sbjct: 218 TEITWNGKEYVFIDTAGLRRKNKIKEELERYSIIRTVTAVERADVVLVVIDAVEGVTEQD 277 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRT---KAIKNLPQIGDIYINTISGRT 360 +I G V++ +NKWD + + + + + +P +Y++ +G+ Sbjct: 278 AKIAGIAHERGKGVIIIVNKWDAIEKNDKTMYEYEKNVRQVLSYMPYAEIMYVSAKTGQR 337 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 L D++ VLE L RI+T LN + + PP+ + +L YITQ+ P Sbjct: 338 LPKLFDMIDMVLENQTL---RISTGVLNEIMMEAVAMQQPPSDKGKRLKLYYITQVAVKP 394 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 P+F+IF + SY RYL N++R F G ++ + K Sbjct: 395 PTFVIFVNDKELMHFSYTRYLENKIREAFGFKGTSLKFFIRERKE 439 >gi|160872137|ref|ZP_02062269.1| GTP-binding protein EngA [Rickettsiella grylli] gi|159120936|gb|EDP46274.1| GTP-binding protein EngA [Rickettsiella grylli] Length = 455 Score = 240 bits (613), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 157/464 (33%), Positives = 249/464 (53%), Gaps = 32/464 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 +I +VG PNVGKS+LFNRL K + A+VG+ PG+TRDRLYG+ I+ F ++DT G+ Sbjct: 16 SIVLVGRPNVGKSSLFNRLTKTRQALVGDIPGLTRDRLYGRGIVGNRPFIVIDTGGLTGC 75 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 K +IA QM Q AI EA +LFL+D++ G++ D + LR N I +V NK + Sbjct: 76 KEKNIAFQMEQQARNAIKEADHVLFLVDAREGLSLLDQQLIQQLRPFNKKITLVINKSEG 135 Query: 124 RIAQRNFYEIYSLDFK--EIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 A E L F+ + ISA H G L +++ K+F Sbjct: 136 LDAALLQSEFSPLGFRTSSLSIISAIHGYG---LQTLMEKVF-----------------T 175 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 + + +T+E S K I +++A+VG+PNVGKSTL+NR+LG R++ Q G TRDS Sbjct: 176 HGACIKTLTAEHILSEKAIKPKIKVAIVGKPNVGKSTLLNRILGEERVIVFDQPGTTRDS 235 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 ++ ++ DTAG+R+ S+ E++++ +V KS+Q++ ++L+DA + Sbjct: 236 IANDIEYRGQHYIFIDTAGIRRKSKTWEAIDKFSVIKSLQAIEASHVVLLLIDAQEGISE 295 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQ----IGDIYINTIS 357 QDL ++ + +G AV++A+NKWD +S +D R + K+L + I + IS Sbjct: 296 QDLHLLGFILESGKAVIIAVNKWDGLS------KDQRDQIKKDLDRRLQFISFAQVIFIS 349 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 G G+ L + + + ++TS L L++ + PP R +L+Y Sbjct: 350 ALHGTGVGHLFTLIRQAYQSATRNLSTSQLTRLLEQAVNTHQPPLSHGRQVKLRYAHPGG 409 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 +PP LI + + +PESY+RYL N R + G PIR+ F+ Sbjct: 410 YNPPIILIHGQYASFLPESYRRYLENFYRKALKIVGSPIRIEFR 453 >gi|89255825|ref|YP_513187.1| GTP-binding protein EngA [Francisella tularensis subsp. holarctica LVS] gi|115314316|ref|YP_763039.1| GTP-binding protein EngA [Francisella tularensis subsp. holarctica OSU18] gi|156501805|ref|YP_001427870.1| GTP-binding protein EngA [Francisella tularensis subsp. holarctica FTNF002-00] gi|167009589|ref|ZP_02274520.1| GTP-binding protein [Francisella tularensis subsp. holarctica FSC200] gi|254367186|ref|ZP_04983217.1| GTP-binding protein [Francisella tularensis subsp. holarctica 257] gi|254367192|ref|ZP_04983222.1| GTP-binding protein [Francisella tularensis subsp. holarctica 257] gi|254368682|ref|ZP_04984696.1| hypothetical protein FTAG_01704 [Francisella tularensis subsp. holarctica FSC022] gi|290953028|ref|ZP_06557649.1| GTP-binding protein EngA [Francisella tularensis subsp. holarctica URFT1] gi|295313760|ref|ZP_06804335.1| GTP-binding protein EngA [Francisella tularensis subsp. holarctica URFT1] gi|122325651|sp|Q0BND2|DER_FRATO RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|122501151|sp|Q2A515|DER_FRATH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|166198715|sp|A7NAB1|DER_FRATF RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|89143656|emb|CAJ78854.1| GTP-binding protein [Francisella tularensis subsp. holarctica LVS] gi|115129215|gb|ABI82402.1| GTP-binding protein [Francisella tularensis subsp. holarctica OSU18] gi|134253007|gb|EBA52101.1| GTP-binding protein [Francisella tularensis subsp. holarctica 257] gi|134253012|gb|EBA52106.1| GTP-binding protein [Francisella tularensis subsp. holarctica 257] gi|156252408|gb|ABU60914.1| GTP-binding protein [Francisella tularensis subsp. holarctica FTNF002-00] gi|157121597|gb|EDO65774.1| hypothetical protein FTAG_01704 [Francisella tularensis subsp. holarctica FSC022] Length = 465 Score = 240 bits (613), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 159/472 (33%), Positives = 249/472 (52%), Gaps = 25/472 (5%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M + +AIVG NVGKSTLFN L A+V + G+TRDR YGQA + + + +VDT GI Sbjct: 1 MSFLVAIVGRANVGKSTLFNVLTNSHDALVFDFEGVTRDRQYGQAKYDDLDYLVVDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 +D K+ + M Q+++AI+EA+L+ F++D ++G+T D + S LR+K+ +++V NK Sbjct: 61 SD-KDVGFDEFMAKQSQIAIDEANLVFFVVDGRSGLTTGDEYVASLLRQKDKKVVVVVNK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D + E YS F ++ ISA H T +L K+ PL Sbjct: 120 VDGTDEEAAMAEFYSFGFDKVFAISAAHRRNTQKL--------VDKFLKKPL-------- 163 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 NE T E K ++ + +++GRPNVGKSTL NR+LG +R++ G T D Sbjct: 164 NEYYQDYTQTQEHKEQQRH---GIHFSLIGRPNVGKSTLTNRMLGEDRVVVFDMPGTTID 220 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 SVSI + I DTAG+RK ++ ++LE+ +V K++Q+++ + ++DA Sbjct: 221 SVSIPFERHGQKYTIVDTAGVRKRGKVKQTLEKFSVIKTLQAIQDSNVVVAVVDARQGIS 280 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVS--DKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 QDL ++ G A+VLA+NKWD ++ D++ + QDL+ K L DI+ IS Sbjct: 281 DQDLSLIHFAIKNGRALVLAVNKWDGMTEEDRIQVKQDLKRKLF-FLQDYVDIHF--ISA 337 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 G + + S+ +ITT+ +Q + PP + +LKY Sbjct: 338 LYGTNVGHVFESIDTAYACANKKITTADATRLMQLAVEAHSPPMVGKFRIKLKYAHVGGH 397 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I +++P SYKRYL N R G PI F+ S+NP+ + Sbjct: 398 NPPVIVIHGNQVSRLPNSYKRYLENFFREALDFRGTPIVFEFKQSENPFADR 449 >gi|258654174|ref|YP_003203330.1| small GTP-binding protein [Nakamurella multipartita DSM 44233] gi|258557399|gb|ACV80341.1| small GTP-binding protein [Nakamurella multipartita DSM 44233] Length = 483 Score = 240 bits (612), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 142/468 (30%), Positives = 242/468 (51%), Gaps = 33/468 (7%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+A+VG PNVGKSTL NRL+ ++ AVV + PG+TRDR+ A+ G F +VDT G D Sbjct: 48 TLAVVGRPNVGKSTLVNRLIGRREAVVQDVPGVTRDRVSHDALWRGRRFTVVDTGGW-DP 106 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + ++ Q E A+ + +L ++D+ G T + AI LR+ P+I+ NK+D Sbjct: 107 MASGLQAEVTAQAERAMQTSDAVLVVVDASVGATETEDAIAKVLRRSKRPVILAVNKVDD 166 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 A+ + ++SL E + +S H G+ +L + + P P E + + Sbjct: 167 ERAEADAAALWSLGLGEPIAVSGLHGRGSGDLLDAVLEAL----PTAPEEFVGSG----- 217 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 P R+A++GRPNVGKS+L+N+L G +R + + +G T D V Sbjct: 218 -----------------GGPRRVALIGRPNVGKSSLLNKLTGESRSVVHAVAGTTVDPVD 260 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 DTAG+R+ + +E ++ ++ + E I L+D++ P +QD Sbjct: 261 SLVEIDGQLWRFVDTAGLRRRVNQAKGMEYYASLRTQTALESAEVAIALIDSSTPITEQD 320 Query: 304 LRIVDSVFNTGHAVVLALNKWDMV-SDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 R++ V ++G A+V+ALNK D+V +D+ ++D + +++L ++ IS ++G Sbjct: 321 QRVISMVIDSGRALVIALNKADLVDADRRAEVED---EVLRDLARVAWAQRINISAQSGR 377 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 G+ L ++ + W RI T LNSWL + PPP + R+ + TQ + PP+ Sbjct: 378 GVHRLAPAMTRALESWDRRIPTGRLNSWLGELIAATPPPVRGGKQPRVLFATQASNRPPT 437 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 F++F T + Y+R++ RLR +F +G P+R+ + + KK Sbjct: 438 FVLFTT--GFLEAGYRRFIERRLREDFEFTGSPVRVNVRVREKRGAKK 483 >gi|78186288|ref|YP_374331.1| GTP-binding protein EngA [Chlorobium luteolum DSM 273] gi|123583448|sp|Q3B5U3|DER_PELLD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|78166190|gb|ABB23288.1| Small GTP-binding protein domain [Chlorobium luteolum DSM 273] Length = 436 Score = 240 bits (612), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 148/458 (32%), Positives = 241/458 (52%), Gaps = 31/458 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTLFNR++++K A+V PG+TRDR + G F ++DT G A + Sbjct: 5 IALVGRPNVGKSTLFNRILREKAAIVDPTPGVTRDRHIAEGHWQGREFRLMDTGGYAP-E 63 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRK--KNIPIIIVSNKMD 122 + I+ M +QT +AI +A +I+FL D ++G++ D + L++ + PI + NK + Sbjct: 64 DGVISTAMLEQTMMAIQDADIIIFLADVRSGVSYDDLELAKILKRDFSDKPIFLAVNKAE 123 Query: 123 TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 + S F E ISA G ++L I F + ++ Sbjct: 124 SPQLAIEAASFVSTGFTEPWAISARDGSGVADLLDEILLTFPE---------------SD 168 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 P+E+ +R+AV+GRPNVGKS+ +N LLG NR + S G TRD++ Sbjct: 169 GPPEED-------------GAIRLAVIGRPNVGKSSFVNALLGSNRQIVSSIPGTTRDAI 215 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + K + DTAG+RK ++I+ +E + +S +++ CE IV+LDAT EKQ Sbjct: 216 DTRFTRKQQEFMLIDTAGLRKRTKISAGIEYYSSLRSERAIERCEVAIVMLDATPGIEKQ 275 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 DL+I++ V+L +NKWD+V + ++ + I + S T + Sbjct: 276 DLKIINIAAERKRGVLLLVNKWDLVEKDSKTSKQYEESLRSHMGNLSYIPVIFTSALTKK 335 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 L + + EI++ +I+TS LN +L++ N P T + ++KY+TQI++ P Sbjct: 336 NLYRAIDTAKEISQNRSRKISTSALNRFLEEALAANHPSTRTGKELKIKYMTQIEAPWPV 395 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCF 460 F FC P + +++++L N+LR FSL G+ I + F Sbjct: 396 FAFFCNNPELVQTNFRKFLENKLREKFSLEGVTISLRF 433 >gi|328676517|gb|AEB27387.1| GTP-binding protein EngA [Francisella cf. novicida Fx1] Length = 465 Score = 240 bits (612), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 158/472 (33%), Positives = 249/472 (52%), Gaps = 25/472 (5%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M + +AIVG NVGKSTLFN L + A+V + G+TRDR YGQA + + + +VDT GI Sbjct: 1 MSFLVAIVGRANVGKSTLFNVLTNSRDALVFDFEGVTRDRQYGQAKYDDLDYLVVDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 +D K+ + M Q+++AI+EA+L+ F++D ++G+T D + LR+K+ +++V NK Sbjct: 61 SD-KDAGFDEFMAKQSQIAIDEANLVFFVVDGRSGLTTGDEYVADLLRQKDKKVVVVVNK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D + E YS F ++ ISA H T +L K+ PL Sbjct: 120 VDGTDEEAAMAEFYSFGFDKVFAISAAHRRNTQKL--------VDKFLKKPL-------- 163 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 NE T E K ++ + +++GRPNVGKSTL NR+LG +R++ G T D Sbjct: 164 NEYYQDYTQTQEHKEQQRH---GIHFSLIGRPNVGKSTLTNRMLGEDRVVVFDMPGTTID 220 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 SVSI + I DTAG+RK ++ ++LE+ +V K++Q+++ + ++DA Sbjct: 221 SVSIPFERHGQKYTIVDTAGVRKRGKVKQTLEKFSVIKTLQAIQDSNVVVAVVDARQGIS 280 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVS--DKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 QDL ++ G A+VLA+NKWD ++ D++ + QDL+ K L DI+ IS Sbjct: 281 DQDLSLIHFAIKNGRALVLAINKWDGMTEEDRIQVKQDLKRKLF-FLQDYVDIHF--ISA 337 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 G + + S+ +ITT+ +Q + PP + +LKY Sbjct: 338 LHGTNVGHVFESIDTAYACANKKITTADATRLMQLAVEAHSPPMVGKFRIKLKYAHVGGH 397 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I +++P SYKRYL N R G PI F+ S+NP+ + Sbjct: 398 NPPVIVIHGNQVSRLPNSYKRYLENFFREALDFRGTPIVFEFKQSENPFADR 449 >gi|124515035|gb|EAY56546.1| GTP-binding protein (EngA) [Leptospirillum rubarum] Length = 466 Score = 240 bits (612), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 140/458 (30%), Positives = 229/458 (50%), Gaps = 6/458 (1%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAI+G PNVGKSTLFNRL+ ++ A+V + PG+TRDR Y Q I F +VDT GI G Sbjct: 8 IAILGRPNVGKSTLFNRLLSRREAIVEDRPGVTRDRHYSQGTIGRKSFRLVDTGGILFGD 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + + + Q A+ EA +++++D + G P D + +R+ P + NK+DT Sbjct: 68 DHPLGESIRKQALFALEEADAVIYVMDGREGYLPVDADVIGRIRRSGKPSVFAVNKVDTV 127 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + + ++ ISA H L + P ++ R E+ Sbjct: 128 KTEEVLADFHRHGVAPLIGISAAHGRNVDALLDPFLDLMPDTEDAFP---VDPGIRFSEA 184 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 + +I + + + P R+AV+GRPNVGKSTL+NRLLG RL+T G TRD++ Sbjct: 185 SESDIQAWLQ---RRKDDPPRVAVIGRPNVGKSTLVNRLLGEERLVTSPIPGTTRDAIDT 241 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 +++ DTAG+RK ++ E+ E ++ +++ E +VLL A DL Sbjct: 242 LVTFRDKTYHFVDTAGLRKKGKVAEASELYAQIRTDRAILESEIAVVLLSAEDGLTDGDL 301 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 RI+ V + ++LA NKWD + + L + P + + S +TG + Sbjct: 302 RIIRQVIDHRRGLILAWNKWDTLKSTDHSLAPPFRDVRERYPFLSFAPMFGCSAKTGFHV 361 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 L + + + TR+TTS LN+ L +PPP + N R+ Y+TQ+Q +P + Sbjct: 362 SQLFGHIATVRDWYFTRVTTSELNNLLLPIVQASPPPRLKNHPVRIFYVTQVQIAPTVIM 421 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 F P I Y+++L ++R + G+P + Q+ Sbjct: 422 AFSNKPEGISLQYRQFLSRKIREKYPFVGVPFLLKVQA 459 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 53/214 (24%), Positives = 92/214 (42%), Gaps = 16/214 (7%) Query: 203 PLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMR 262 P IA++GRPNVGKSTL NRLL + + G+TRD + DT G+ Sbjct: 5 PPLIAILGRPNVGKSTLFNRLLSRREAIVEDRPGVTRDRHYSQGTIGRKSFRLVDTGGIL 64 Query: 263 KPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALN 322 L + K+++ ++ + I ++D + D ++ + +G V A+N Sbjct: 65 FGD--DHPLGESIRKQALFALEEADAVIYVMDGREGYLPVDADVIGRIRRSGKPSVFAVN 122 Query: 323 KWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK------ 376 K D V + +L D + P IG I+ GR + L D + ++ + Sbjct: 123 KVDTVKTE-EVLADFHRHGVA--PLIG---ISAAHGRNVDALLDPFLDLMPDTEDAFPVD 176 Query: 377 --LWKTRITTSYLNSWLQKTQLQNPPPTIFNRYN 408 + + + S + +WLQ+ + P + R N Sbjct: 177 PGIRFSEASESDIQAWLQRRKDDPPRVAVIGRPN 210 >gi|308389025|gb|ADO31345.1| putative GTP-binding protein EngA [Neisseria meningitidis alpha710] Length = 485 Score = 240 bits (612), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 148/467 (31%), Positives = 231/467 (49%), Gaps = 30/467 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M TIA+VG PNVGKSTLFNRL + K A+V + PG+TRDR YG + + ++DT G Sbjct: 1 MKPTIALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVIDTGGF 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + I +M QT A++EA ++FL+D + G+TP D I LR+ P+ + NK Sbjct: 61 EPVVDSGILHEMAKQTLQAVDEADAVVFLVDGRTGLTPQDKIIADRLRQSPRPVYLAVNK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + E Y L + IS H G ++ + ++ N P +E Sbjct: 121 GEGGNRAVLAAEFYELALGDPYVISGAHGDG-------VYYLIEEILENFPEPEVEE--- 170 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 ++ K V AV+GRPNVGKSTL+N +LG R++ +G TRD Sbjct: 171 ----------ADAKHPV--------FAVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRD 212 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ I + K P I DTAG+R+ ++ E++E+ +V K+MQ+V +++LDA Sbjct: 213 SIHIDFERKGKPFTIIDTAGVRRRGKVDEAVEKFSVIKAMQAVEAANVAVLVLDAQQDIA 272 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 QD I G A+V+A+NKWD +S++ + ++ + L + + IS Sbjct: 273 DQDATIAGFALEAGRALVVAVNKWDGISEERR--EQVKRDINRKLYFLDFAKFHFISALK 330 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G+D L S+ ++ T + LQ + PP +++Y Q +P Sbjct: 331 ERGIDGLFDSIQAAYNAAMIKMPTPKITRVLQSAIERQQPPRAGLVRPKMRYAHQGGMNP 390 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 P ++ + I +SY RYL R F+L G P+R+ + S+NPY Sbjct: 391 PVIVVHGNSLHAISDSYTRYLTQTFRKAFNLQGTPLRIQYNVSENPY 437 >gi|223937585|ref|ZP_03629488.1| small GTP-binding protein [bacterium Ellin514] gi|223893748|gb|EEF60206.1| small GTP-binding protein [bacterium Ellin514] Length = 519 Score = 240 bits (612), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 146/490 (29%), Positives = 244/490 (49%), Gaps = 41/490 (8%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M IAIVG PNVGKS LFNR+ +++A+V + PG+TRDR+ + G F +VDT GI Sbjct: 1 MSGLIAIVGRPNVGKSALFNRIAGRRIAIVHDMPGVTRDRVSAEVEWGGHAFTLVDTGGI 60 Query: 61 A----DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIII 116 + I K +Q +LAI AH+I+ + + GI P D + LR+ P+++ Sbjct: 61 GLLRREKAADVITKAALEQVDLAIEAAHVIILAANVQEGIVPLDQEVADKLRRSGKPVLV 120 Query: 117 VSNKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIE 176 +NK+DT+ + E L F ++ +SA H G +L + + P E++E Sbjct: 121 AANKVDTQKVEAAALEFTELGFDKVFPVSAIHGEGIVDLMNAATALLP------PREILE 174 Query: 177 NNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSG 236 + +E+ + EGK+ + PL++A+VGRPNVGKS++IN L R++ G Sbjct: 175 KAEVDEDVFEGTPEVEGKTK-SELKGPLKLAIVGRPNVGKSSIINALTQSERVIVSPIPG 233 Query: 237 ITRDSVSISWNWKNHPIE----IFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVL 292 TRD+V + + + I + DTAG+RK R+ +S+E +VK++ S+ + +++ Sbjct: 234 TTRDAVDVPFEVEADGIRQSYLLIDTAGLRKSRRVDDSVEFYSVKRTEDSIARADICVLV 293 Query: 293 LDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLN------------LLQDLRTK 340 LDA +QD ++ D + A ++ +NKWD+V + + +D + Sbjct: 294 LDAEAGITEQDKKVADKIVEERRACIVVVNKWDLVEESVRESREQEIERRDAKTRDRDER 353 Query: 341 AIKNLPQIGDI------------YINTI--SGRTGEGLDDLMVSVLEINKLWKTRITTSY 386 ++ L +G+ Y I S ++G LD L+ +V + + ++ TS Sbjct: 354 KVRRLTTLGEFGQWVQEHLFFLDYAPVIFTSAKSGFHLDRLLEAVRYVADQLQQKVPTSI 413 Query: 387 LNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLR 446 LN L P + + Y TQ++ +PP+FL+F + Y++YL LR Sbjct: 414 LNRALNDAVENRQPISAAGHRLKFFYATQVRQAPPTFLLFVNRDELFSDPYRKYLAGELR 473 Query: 447 INFSLSGIPI 456 F G PI Sbjct: 474 KAFGYEGCPI 483 >gi|227495416|ref|ZP_03925732.1| bifunctional cytidylate kinase/GTP-binding protein [Actinomyces coleocanis DSM 15436] gi|226830963|gb|EEH63346.1| bifunctional cytidylate kinase/GTP-binding protein [Actinomyces coleocanis DSM 15436] Length = 727 Score = 240 bits (612), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 150/458 (32%), Positives = 242/458 (52%), Gaps = 32/458 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA-DG 63 +AI+G PNVGKSTL NR+++++ AVV + PG+TRDR+ A G F +VDT G D Sbjct: 294 LAIIGRPNVGKSTLVNRILERRAAVVQDTPGVTRDRVSYPAQWAGRDFTLVDTGGWEMDV 353 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 K K + DQ E+AI A ++F++D+ G T D + LR+ N PI++ +NK+D+ Sbjct: 354 KGLD--KSVADQAEIAIEMADAVIFVVDATVGATHTDEQLVRVLRRSNKPILLAANKVDS 411 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + ++SL E +SA H G +L +I PLE Sbjct: 412 ANQEADAAYLWSLGLGEPFPVSALHGRGAGDLLDKAMEIL-------PLE---------S 455 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 S +++ +G P RIA++GRPNVGKS+L+N+L G +R++ +G TRD V Sbjct: 456 SVAQSMPKDG---------PRRIALIGRPNVGKSSLLNQLAGSDRVVVNDLAGTTRDPVD 506 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 P DTAG+R+ T + ++ ++ E +VLLDA+ +QD Sbjct: 507 ELIEIDGRPWWFVDTAGVRRKMHRTTGADYYASIRTQAALEKAELALVLLDASEKMTEQD 566 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 +R+V + + G AVV+ NKWD+V + + + L+ + + L QI +S +TG Sbjct: 567 VRVVQAAIDAGRAVVIINNKWDLVDE--DRREQLKFEHERELKQIQWASRINLSAKTGWH 624 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 + ++ ++ E W+TRI+T LNS+L + P P + R+ + TQ + PP F Sbjct: 625 TNRIVRAMDEALAGWETRISTGRLNSFLGELVAAKPHPVRGGKQPRILFATQASTKPPRF 684 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 +IF T + +Y+R++ RLR +F G PI++ + Sbjct: 685 VIFTT--GFLDPAYRRFIERRLREDFGFHGTPIQISVR 720 >gi|15676748|ref|NP_273893.1| GTP-binding protein EngA [Neisseria meningitidis MC58] gi|26006741|sp|Q9JZY1|DER_NEIMB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|7226088|gb|AAF41263.1| essential GTPase [Neisseria meningitidis MC58] gi|316984259|gb|EFV63235.1| small GTP-binding domain protein [Neisseria meningitidis H44/76] gi|325140003|gb|EGC62532.1| GTP-binding protein [Neisseria meningitidis CU385] gi|325200471|gb|ADY95926.1| GTP-binding protein [Neisseria meningitidis H44/76] Length = 485 Score = 239 bits (611), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 149/467 (31%), Positives = 231/467 (49%), Gaps = 30/467 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M TIA+VG PNVGKSTLFNRL + K A+V + PG+TRDR YG + + ++DT G Sbjct: 1 MKPTIALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVIDTGGF 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + I +M QT A++EA ++FL+D + G+TP D I LR+ P+ + NK Sbjct: 61 EPVVDSGILHEMAKQTLQAVDEADAVVFLVDGRTGLTPQDKIIADRLRQSPRPVYLAVNK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + E Y L + IS H G L I +K+P Sbjct: 121 GEGGNRAVLAAEFYELALGDPYVISGAHGDGVYYLIEDIL----EKFP------------ 164 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 E ++ + P+ AV+GRPNVGKSTL+N +LG R++T +G TRD Sbjct: 165 -----------EPEAEEADARHPV-FAVIGRPNVGKSTLVNAILGEERVITFDMAGTTRD 212 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ I + + P I DTAG+R+ ++ E++E+ +V K+MQ+V +++LDA Sbjct: 213 SIHIDFEREGKPFTIIDTAGVRRRGKVDEAVEKFSVIKAMQAVEAANVAVLVLDAQQDIA 272 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 QD I G A+V+A+NKWD +S++ + ++ + L + + IS Sbjct: 273 DQDATIAGFALEAGRALVVAVNKWDGISEERR--EQVKRDINRKLYFLDFAKFHFISALK 330 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G+D L S+ ++ T + LQ + PP +++Y Q +P Sbjct: 331 ERGIDGLFDSIQAAYNAAMIKMPTPKITRVLQSAIERQQPPRAGLVRPKMRYAHQGGMNP 390 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 P ++ + I +SY RYL R F+L G P+R+ + S+NPY Sbjct: 391 PVIVVHGNSLHAISDSYTRYLTQTFRKAFNLQGTPLRIQYNVSENPY 437 >gi|22298421|ref|NP_681668.1| GTP-binding protein EngA [Thermosynechococcus elongatus BP-1] gi|34222551|sp|Q8DKI1|DER_THEEB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|22294600|dbj|BAC08430.1| GTP-binding protein [Thermosynechococcus elongatus BP-1] Length = 449 Score = 239 bits (611), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 142/466 (30%), Positives = 237/466 (50%), Gaps = 38/466 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKST NRL ++ A+V + PG+TRDR Y A F +VDT G+ Sbjct: 6 VAVVGRPNVGKSTFVNRLAGERDAIVHDEPGVTRDRTYRPAFWQDREFLVVDTGGLVFDD 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + Q ELA+ EA +F++D +AG T D+ I ++LR+ ++P+++ NK ++R Sbjct: 66 DSDFLPLIRQQAELALQEATAAIFVVDGQAGPTALDYEIAAWLRQLSLPVLVAVNKCESR 125 Query: 125 -IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + Q E +SL E IS+ H GT EL ++I E Sbjct: 126 QMGQVQAAEFWSLGLGEPYPISSIHGSGTGELLD---------------QLITYLPAGET 170 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 P+ + +++A+ GRPNVGKS+L+N L+G +R + SG TRD++ Sbjct: 171 LPE--------------APEIQVAIAGRPNVGKSSLLNALIGSDRAIVSPISGTTRDAID 216 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 DTAG+RK + + E +V ++ +++ + +++LDA +QD Sbjct: 217 TVIEHGGTQYRFIDTAGIRKRTHVAYGPEMFSVHRAFKAIHRSDVVLLVLDALEEITEQD 276 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDK----LNLLQDLRTKAIKNLPQIGDIYINTISGR 359 R+ + + G A VL +NKWD V DK +N +D + + L ++ +S Sbjct: 277 QRLAGHIADQGRACVLIVNKWDAVLDKDTYTINAYRDRLYQRLHFLEWADALF---VSAH 333 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKT-QLQNPPPTIFNRYNRLKYITQIQS 418 TG+ L+ + +V + + R+TT+ +N +Q+ PP T R ++ Y TQ+ + Sbjct: 334 TGQRLEKIFAAVDAAVEQHRRRVTTAVVNDVIQEALHWHTPPATRQGRQGKIYYATQVAT 393 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 PP+F IF E+Y+RY+ +++R G PIR+ ++S K Sbjct: 394 QPPTFAIFVNDAKLFKENYRRYIESQIRQQLGFRGTPIRLLWRSKK 439 >gi|291288774|ref|YP_003505590.1| ribosome-associated GTPase EngA [Denitrovibrio acetiphilus DSM 12809] gi|290885934|gb|ADD69634.1| ribosome-associated GTPase EngA [Denitrovibrio acetiphilus DSM 12809] Length = 450 Score = 239 bits (611), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 144/463 (31%), Positives = 234/463 (50%), Gaps = 39/463 (8%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 ++T+ I+G PNVGKSTLFNRL K++A+V + PG+TRDR+ G F IVDTAG Sbjct: 1 MFTVGIIGRPNVGKSTLFNRLAGKRLAIVDDMPGVTRDRIEFTTEWEGEKFRIVDTAGF- 59 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 D K + K+M Q A++EA + + D G+ P D + LR KN P +V NK+ Sbjct: 60 DLKEELVKKEMQQQFYSALDEADYFILMADGTEGVHPLDEIVIDLLRHKNKPFQLVVNKV 119 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D+ + Y+ Y + + I+ ISA H L I K Sbjct: 120 DSDSKEDFIYDFYRMGVEHIIAISASHGRNVDMLLDEIIKFI------------------ 161 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 EG + ++I V GRPNVGKS++IN+ LG RL+ G TRD+ Sbjct: 162 ---------PEGHDTTDPYEGRIKIVVTGRPNVGKSSMINKWLGEERLIVTPIPGTTRDA 212 Query: 242 VSISWNWKNHPIEIFDTAGMR-KPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 V + + DTAG+R K S + +E+ + +V + ++ L+DA Sbjct: 213 VDTFFELDGDKYVLIDTAGIRKKKSMFKDKIEKYGYYRWKDAVERADISVCLIDAEEGIT 272 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLN----LLQDLRTK-AIKNLPQIGDIYINT 355 ++D++++ + G V+L +NKWD++ DK + L+D+ K N P + I+ +T Sbjct: 273 ERDVKVIADTWEAGRPVILVVNKWDLIEDKDDAAKAFLKDVDYKLQFLNNPSM--IFTST 330 Query: 356 ISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQ 415 I TG+ + + + ++ RI T L +++ ++ PP + N+ + YITQ Sbjct: 331 I---TGKNIYKIFKAAKDLYIEASKRIGTHKLQQIIEEAVYRHQPPVVKNKRIKFYYITQ 387 Query: 416 IQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 + PP F++F +P+ + SY+R+L+N +R SG+P+R+ Sbjct: 388 VSILPPEFVVFVNYPDSVHFSYQRFLVNLVREYHGFSGVPVRV 430 >gi|300858400|ref|YP_003783383.1| hypothetical protein cpfrc_00982 [Corynebacterium pseudotuberculosis FRC41] gi|300685854|gb|ADK28776.1| hypothetical protein cpfrc_00982 [Corynebacterium pseudotuberculosis FRC41] gi|302330667|gb|ADL20861.1| GTP-binding protein EngA [Corynebacterium pseudotuberculosis 1002] gi|308276351|gb|ADO26250.1| GTP-binding protein EngA [Corynebacterium pseudotuberculosis I19] Length = 540 Score = 239 bits (611), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 139/462 (30%), Positives = 236/462 (51%), Gaps = 40/462 (8%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI- 60 + T+AIVG PNVGKS+L NR + ++ AVV + PG+TRDR+ A G F + DT G Sbjct: 105 LCTVAIVGRPNVGKSSLVNRFLGRREAVVEDFPGVTRDRVSYLADWGGQRFWVQDTGGWD 164 Query: 61 --ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVS 118 G + +IA+Q E+A+ A +I+ ++D+K GIT D + L++ +P+++V+ Sbjct: 165 PNVKGIHGAIARQ----AEVAMATADVIIMVVDTKVGITETDSVMARKLQRAEVPVLLVA 220 Query: 119 NKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 NK D+ + E Y+L + +SA+H G +++ + F P P Sbjct: 221 NKFDSDSQYADMAEFYALGLGDPWPVSAQHGRGGADVLEQVLAAF----PEEP------- 269 Query: 179 KRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 S + P R+A+VG+PNVGKS+L+N++ G +R + + SG T Sbjct: 270 ----------------RSASIVEGPRRVALVGKPNVGKSSLLNKISGEDRSVVDNASGTT 313 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 D V + DTAG+RK + + E ++ + E + ++D++ P Sbjct: 314 VDPVDSLVQLDQKLWKFIDTAGLRKKVKNAQGHEYYASLRTRGVIDAAEVCVFMIDSSEP 373 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLR-TKAIKNLPQIGDIYINTIS 357 +QD R++ + G A+VL NKWD++ + D + + ++P + + I+ + Sbjct: 374 VSEQDQRVLAMILEAGKALVLVFNKWDLMDEDRRWELDREIDQQLAHIPWVKRVNISAKT 433 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 GR + L+ M+ LE W R++T LN+WL+ T QNPPP R R+ + TQ Sbjct: 434 GRALQKLEPYMLEALEN---WDKRVSTGQLNTWLRATIAQNPPPMKGGRVPRVLFATQAT 490 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 + PP+ ++F T + Y+RYL + R +F G P+++ Sbjct: 491 TQPPTIVLFTT--GFLDAGYRRYLERKFRESFGFEGTPVKIA 530 >gi|208780512|ref|ZP_03247852.1| GTPase of unknown function family protein, putative [Francisella novicida FTG] gi|254372413|ref|ZP_04987903.1| hypothetical protein FTCG_01637 [Francisella tularensis subsp. novicida GA99-3549] gi|151570141|gb|EDN35795.1| hypothetical protein FTCG_01637 [Francisella novicida GA99-3549] gi|208743658|gb|EDZ89962.1| GTPase of unknown function family protein, putative [Francisella novicida FTG] Length = 465 Score = 239 bits (611), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 158/472 (33%), Positives = 249/472 (52%), Gaps = 25/472 (5%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M + +AIVG NVGKSTLFN L + A+V + G+TRDR YGQA + + + +VDT GI Sbjct: 1 MSFLVAIVGRANVGKSTLFNVLTNSRDALVFDFEGVTRDRQYGQAKYDDLDYLVVDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 +D K+ + M Q+++AI+EA+L+ F++D ++G+T D + LR+K+ +++V NK Sbjct: 61 SD-KDVGFDEFMAKQSQIAIDEANLVFFVVDGRSGLTTGDEYVADLLRQKDKKVVVVVNK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D + E YS F ++ ISA H T +L K+ PL Sbjct: 120 VDGTEEEAAMAEFYSFGFDKVFAISAAHRRNTQKL--------VDKFLKKPL-------- 163 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 NE T E K ++ + +++GRPNVGKSTL NR+LG +R++ G T D Sbjct: 164 NEYYQDYTQTQEHKEQQRH---GIHFSLIGRPNVGKSTLTNRMLGEDRVVVFDMPGTTID 220 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 SVSI + I DTAG+RK ++ ++LE+ +V K++Q+++ + ++DA Sbjct: 221 SVSIPFERHGQKYTIVDTAGVRKRGKVKQTLEKFSVIKTLQAIQDSNVVVAVVDARQGIS 280 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVS--DKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 QDL ++ G A+VLA+NKWD ++ D++ + QDL+ K L DI+ IS Sbjct: 281 DQDLSLIHFAIKNGRALVLAVNKWDGMTEEDRIQVKQDLKRKLF-FLQDYVDIHF--ISA 337 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 G + + S+ +ITT+ +Q + PP + +LKY Sbjct: 338 LHGTNVGHVFESIDTAYACANKKITTADATRLMQLAVEAHSPPMVGKFRIKLKYAHVGGH 397 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I +++P SYKRYL N R G PI F+ S+NP+ + Sbjct: 398 NPPVIVIHGNQVSRLPNSYKRYLENFFREALDFRGTPIVFEFKQSENPFADR 449 >gi|218887353|ref|YP_002436674.1| GTP-binding protein EngA [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758307|gb|ACL09206.1| small GTP-binding protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 506 Score = 239 bits (611), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 154/491 (31%), Positives = 258/491 (52%), Gaps = 42/491 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIING-VIFNIVDTAGIADG 63 IA+VG PNVGKSTLFNRL++ A+ + PG+TRDR+ GQ G F IVDT GI Sbjct: 20 IALVGRPNVGKSTLFNRLIRANRAITHDRPGVTRDRMEGQVRSRGKQTFAIVDTGGITLD 79 Query: 64 KNCSIAK----------QMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIP 113 + ++A+ ++ Q E A+ EA I ++D + G+TP+D + + LR+ P Sbjct: 80 AHAAVAEGPEGIRGFEAEILRQAEAAMAEAAGICLVVDGRDGLTPFDEHLAAHLRRAGKP 139 Query: 114 IIIVSNKMD-TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPL 172 +++V NK+D E ++L F ++ +SA H V+ ++ P+ P Sbjct: 140 VLVVVNKVDGVEREDEMLAEFHALGFP-LLPVSAAHGHNVR----VLEDEMREMLPDEPE 194 Query: 173 EMIENNKRNEESPKENITSEGKS--------SVKNISKP---------LRIAVVGRPNVG 215 E N + + + SEG+ S ++ ++P LR+A++GRPN G Sbjct: 195 EEGAANGEDGDDADDPYASEGEGDANADGAESGESAAEPKGPPYDPTHLRLAMLGRPNAG 254 Query: 216 KSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKT 275 KS+L+N L G R++ +G TRDSV +S+ + I DTAG+R+ SRIT+S+E+ + Sbjct: 255 KSSLVNALTGQQRMIVSDMAGTTRDSVDVSFESGDKTITFVDTAGVRRRSRITDSVERYS 314 Query: 276 VKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQ 335 V S++S T+++LDA +QD R+VD + ++ +NK D+V K LL Sbjct: 315 VNASLKSTTKAHVTLLVLDALQGVTQQDKRLVDLLDERKTPFMVLVNKIDLVPRK--LLP 372 Query: 336 DLRTK---AIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQ 392 DL ++ P + +Y +S ++G+GL ++ + R+ T LN ++ Sbjct: 373 DLEASFKGMLEFCPHVPLLY---VSAKSGKGLGPVLPMAERVRAECHVRVGTGQLNRAME 429 Query: 393 KTQLQNPPPTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLS 452 + ++ PP + + Y+TQ +++PP+F+ F ++I Y RY+ LR F + Sbjct: 430 EVLTRHQPPVVRRLRPKFFYLTQAETNPPTFVFFVNDADRIQTPYARYVEKALRRMFRIE 489 Query: 453 GIPIRMCFQSS 463 P+R+ F+SS Sbjct: 490 HAPMRVRFRSS 500 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/152 (26%), Positives = 68/152 (44%), Gaps = 11/152 (7%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKN-HPIEIFDTAGM-- 261 +IA+VGRPNVGKSTL NRL+ NR +T + G+TRD + + I DT G+ Sbjct: 19 KIALVGRPNVGKSTLFNRLIRANRAITHDRPGVTRDRMEGQVRSRGKQTFAIVDTGGITL 78 Query: 262 -------RKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTG 314 P I E + ++++ ++ +++D D + + G Sbjct: 79 DAHAAVAEGPEGI-RGFEAEILRQAEAAMAEAAGICLVVDGRDGLTPFDEHLAAHLRRAG 137 Query: 315 HAVVLALNKWDMVSDKLNLLQDLRTKAIKNLP 346 V++ +NK D V + +L + LP Sbjct: 138 KPVLVVVNKVDGVEREDEMLAEFHALGFPLLP 169 >gi|302206113|gb|ADL10455.1| GTP-binding protein EngA [Corynebacterium pseudotuberculosis C231] Length = 540 Score = 239 bits (610), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 139/462 (30%), Positives = 236/462 (51%), Gaps = 40/462 (8%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI- 60 + T+AIVG PNVGKS+L NR + ++ AVV + PG+TRDR+ A G F + DT G Sbjct: 105 LCTVAIVGRPNVGKSSLVNRFLGRREAVVEDFPGVTRDRVSYLADWGGQRFWVQDTGGWD 164 Query: 61 --ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVS 118 G + +IA+Q E+A+ A +I+ ++D+K GIT D + L++ +P+++V+ Sbjct: 165 PNVKGIHGAIARQ----AEVAMATADVIIMVVDTKVGITETDSVMARKLQRAEVPVLLVA 220 Query: 119 NKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 NK D+ + E Y+L + +SA+H G +++ + F P P Sbjct: 221 NKFDSDSQYADMAEFYALALGDPWPVSAQHGRGGADVLEQVLAAF----PEEP------- 269 Query: 179 KRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 S + P R+A+VG+PNVGKS+L+N++ G +R + + SG T Sbjct: 270 ----------------RSASIVEGPRRVALVGKPNVGKSSLLNKISGEDRSVVDNASGTT 313 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 D V + DTAG+RK + + E ++ + E + ++D++ P Sbjct: 314 VDPVDSLVQLDQKLWKFIDTAGLRKKVKNAQGHEYYASLRTRGVIDAAEVCVFMIDSSEP 373 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLR-TKAIKNLPQIGDIYINTIS 357 +QD R++ + G A+VL NKWD++ + D + + ++P + + I+ + Sbjct: 374 VSEQDQRVLAMILEAGKALVLVFNKWDLMDEDRRWELDREIDQQLAHIPWVKRVNISAKT 433 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 GR + L+ M+ LE W R++T LN+WL+ T QNPPP R R+ + TQ Sbjct: 434 GRALQKLEPYMLEALEN---WDKRVSTGQLNTWLRATIAQNPPPMKGGRVPRVLFATQAT 490 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 + PP+ ++F T + Y+RYL + R +F G P+++ Sbjct: 491 TQPPTIVLFTT--GFLDAGYRRYLERKFRESFGFEGTPVKIA 530 >gi|59800867|ref|YP_207579.1| GTP-binding protein EngA [Neisseria gonorrhoeae FA 1090] gi|8134430|sp|O87407|DER_NEIG1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|3722226|gb|AAC63508.1| essential Gc protein [Neisseria gonorrhoeae] gi|59717762|gb|AAW89167.1| putative GTP-binding protein [Neisseria gonorrhoeae FA 1090] Length = 485 Score = 239 bits (610), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 146/467 (31%), Positives = 231/467 (49%), Gaps = 30/467 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M TIA++G PNVGKSTLFNRL + K A+V + PG+TRDR YG + + ++DT G Sbjct: 1 MKPTIALIGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYFVIDTGGF 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + I +M QT A++EA ++FL+D + G+TP D I LR+ P+ + NK Sbjct: 61 EPVVDSGILHEMAKQTLQAVDEADAVVFLVDGRTGLTPQDKIIADRLRQSPRPVYLAVNK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + E Y L E IS H G ++ + ++ N P Sbjct: 121 GEGGDRAVLAAEFYELALGEPHVISGAHGDG-------VYYLIEEILENFP--------- 164 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 E ++ + P+ AV+GRPNVGKSTL+N +LG R++ +G TRD Sbjct: 165 -----------EPEAEEADAKHPV-FAVIGRPNVGKSTLVNAILGEKRVIAFDMAGTTRD 212 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ I + + P I DTAG+R+ ++ E++E+ +V K+MQ+V +++LDA Sbjct: 213 SIHIDFEREGKPFTIIDTAGVRRRGKVDEAVEKFSVIKAMQAVEAANVAVLVLDAQQDIA 272 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 QD I G A+V+A+NKWD +S++ + ++ + L + + IS Sbjct: 273 DQDATIAGFALEAGRALVVAVNKWDGISEERR--EQVKRDISRKLYFLDFAKFHFISALK 330 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G+D L S+ ++ T + LQ + PP +++Y Q +P Sbjct: 331 ERGIDGLFESIQAAYNAAMIKMPTPKITRVLQTAVERQQPPRAGLVRPKMRYAHQGGMNP 390 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 P ++ + I +SY RYL R F+L G P+R+ + S+NPY Sbjct: 391 PVIVVHGNSLHAISDSYTRYLTQTFRKAFNLQGTPLRIQYNVSENPY 437 >gi|268594476|ref|ZP_06128643.1| GTP-binding protein engA [Neisseria gonorrhoeae 35/02] gi|268596471|ref|ZP_06130638.1| GTP-binding protein engA [Neisseria gonorrhoeae FA19] gi|291044231|ref|ZP_06569940.1| GTP-binding protein engA [Neisseria gonorrhoeae DGI2] gi|293399430|ref|ZP_06643583.1| ribosome-associated GTPase EngA [Neisseria gonorrhoeae F62] gi|268547865|gb|EEZ43283.1| GTP-binding protein engA [Neisseria gonorrhoeae 35/02] gi|268550259|gb|EEZ45278.1| GTP-binding protein engA [Neisseria gonorrhoeae FA19] gi|291011125|gb|EFE03121.1| GTP-binding protein engA [Neisseria gonorrhoeae DGI2] gi|291609999|gb|EFF39121.1| ribosome-associated GTPase EngA [Neisseria gonorrhoeae F62] Length = 502 Score = 239 bits (610), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 146/467 (31%), Positives = 231/467 (49%), Gaps = 30/467 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M TIA++G PNVGKSTLFNRL + K A+V + PG+TRDR YG + + ++DT G Sbjct: 18 MKPTIALIGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYFVIDTGGF 77 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + I +M QT A++EA ++FL+D + G+TP D I LR+ P+ + NK Sbjct: 78 EPVVDSGILHEMAKQTLQAVDEADAVVFLVDGRTGLTPQDKIIADRLRQSPRPVYLAVNK 137 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + E Y L E IS H G ++ + ++ N P Sbjct: 138 GEGGDRAVLAAEFYELALGEPHVISGAHGDG-------VYYLIEEILENFP--------- 181 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 E ++ + P+ AV+GRPNVGKSTL+N +LG R++ +G TRD Sbjct: 182 -----------EPEAEEADAKHPV-FAVIGRPNVGKSTLVNAILGEKRVIAFDMAGTTRD 229 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ I + + P I DTAG+R+ ++ E++E+ +V K+MQ+V +++LDA Sbjct: 230 SIHIDFEREGKPFTIIDTAGVRRRGKVDEAVEKFSVIKAMQAVEAANVAVLVLDAQQDIA 289 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 QD I G A+V+A+NKWD +S++ + ++ + L + + IS Sbjct: 290 DQDATIAGFALEAGRALVVAVNKWDGISEERR--EQVKRDISRKLYFLDFAKFHFISALK 347 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G+D L S+ ++ T + LQ + PP +++Y Q +P Sbjct: 348 ERGIDGLFESIQAAYNAAMIKMPTPKITRVLQTAVGRQQPPRAGLVRPKMRYAHQGGMNP 407 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 P ++ + I +SY RYL R F+L G P+R+ + S+NPY Sbjct: 408 PVIVVHGNSLHAISDSYTRYLTQTFRKAFNLQGTPLRIQYNVSENPY 454 >gi|197302999|ref|ZP_03168047.1| hypothetical protein RUMLAC_01725 [Ruminococcus lactaris ATCC 29176] gi|197297854|gb|EDY32406.1| hypothetical protein RUMLAC_01725 [Ruminococcus lactaris ATCC 29176] Length = 442 Score = 239 bits (610), Expect = 8e-61, Method: Compositional matrix adjust. Identities = 139/465 (29%), Positives = 236/465 (50%), Gaps = 35/465 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFN L + +++V + PG+TRDR+Y F ++DT GI Sbjct: 6 VAIVGRPNVGKSTLFNVLAGEMISIVKDTPGVTRDRIYADVDWLDREFTLIDTGGIEPDS 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 I QM +Q ++AI+ A +I+F+ D K G+ D + LR+ P+++V NK+D Sbjct: 66 RDIILSQMREQAQIAIDTADVIIFITDVKQGLVDSDSKVADMLRRSGKPVVLVVNKVDNF 125 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + YE Y+L + + ISA LG ++ + F + + + +++ Sbjct: 126 DKYMADVYEFYNLGIGDPIPISAASRLGLGDMLDAVIAHFPES---------DGTEEDDD 176 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 P R+A+VG+PNVGKS++INRLLG NR++ +G TRD++ Sbjct: 177 RP-------------------RVAIVGKPNVGKSSIINRLLGENRVIVSDIAGTTRDAID 217 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 DTAG+R+ ++I E LE+ ++ +++ +V + ++++DAT +QD Sbjct: 218 TEIVHNGKEYVFIDTAGLRRKNKIKEELERYSIIRTVSAVERADVVLMVIDATEGVTEQD 277 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTK---AIKNLPQIGDIYINTISGRT 360 +I G V++ +NKWD + +++ K + +P +Y++ ++G+ Sbjct: 278 AKIAGIAHERGKGVIIVVNKWDAIEKNDKTMREYEAKIRQVLSYMPYAEIMYVSAMTGQR 337 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 L D++ V+E L RI T LN + + PP+ + +L YITQ+ P Sbjct: 338 LPKLYDMIDMVIENQTL---RIATGVLNEIMTEAVAMQQPPSDKGKRLKLYYITQVAVKP 394 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 P+F+IF + SY RYL N++R F G ++ + K Sbjct: 395 PTFVIFVNDKELMHFSYTRYLENKIREAFGFRGTSLKFFIRERKE 439 >gi|289641297|ref|ZP_06473463.1| small GTP-binding protein [Frankia symbiont of Datisca glomerata] gi|289508895|gb|EFD29828.1| small GTP-binding protein [Frankia symbiont of Datisca glomerata] Length = 457 Score = 239 bits (610), Expect = 8e-61, Method: Compositional matrix adjust. Identities = 148/457 (32%), Positives = 235/457 (51%), Gaps = 31/457 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ A NG F +VDT G + Sbjct: 23 LAVVGRPNVGKSTLVNRILGRRAAVVEDVPGVTRDRVAYDATWNGRRFVVVDTGGW-EPD 81 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +A ++ +Q A++ A +LF++D+ G T D A+ L + +P+++ +NK+D Sbjct: 82 ARGLAARVAEQARAALDTADAVLFVVDTTVGATDADEAVARVLHRSGLPVVLAANKVDDS 141 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + ++SL E +S+ H G+ +L I + P P E E Sbjct: 142 RGEADATALWSLGLGEPHPVSSLHGRGSGDLLDAIL----EALPPAPRERFE-------- 189 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 I P R+A++G+PNVGKS+L+NRL G R L +G TRD V Sbjct: 190 --------------EIDGPRRVALLGKPNVGKSSLLNRLAGTQRSLVHDVAGTTRDPVDE 235 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + DTAG+R+ R E + ++ ++ E IVLLDA+ +QD Sbjct: 236 LVTVGGETWKFVDTAGLRRRVREASGAEYYSSLRTAAALEAAEVAIVLLDASESLTEQDQ 295 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 R++ V G A+VLA NKWD++ + L L + +++L ++ +S TG + Sbjct: 296 RVITMVVEAGRALVLAFNKWDLLDEDRRLT--LEREIVRDLGRVAWAPRVNVSAATGRAV 353 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 D L ++ + W TRI+T LN+WL + PPP+ R R+ + TQ PP F+ Sbjct: 354 DRLAPALRTSLESWGTRISTGRLNAWLGEVVAATPPPSRGGRLPRVLFATQAGVRPPRFV 413 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 IF T + +Y+R+L RLR +F +G PI + + Sbjct: 414 IFST--GFLEPAYRRFLERRLREDFGFAGTPIEISVR 448 >gi|299115668|emb|CBN75868.1| MEngA, mitochondrial EngA GTPase [Ectocarpus siliculosus] Length = 629 Score = 239 bits (610), Expect = 8e-61, Method: Compositional matrix adjust. Identities = 145/488 (29%), Positives = 248/488 (50%), Gaps = 34/488 (6%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + + IVG PNVGKSTL+NRL + A+V G TRDR + G+ F+ DT G+ D Sbjct: 114 FRVVIVGRPNVGKSTLYNRLATRNRAIVTPIAGTTRDRKESTVSLGGMTFDFADTGGLED 173 Query: 63 GKN-----------CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKK- 110 G + + + + +TE AI ++ ++LF++D++ G+T D ++RK+ Sbjct: 174 GADEPWKGPPGTPHPGMPQVVLKKTEEAIEDSDIVLFMVDARQGVTEADRHYARWVRKRQ 233 Query: 111 --NIPIIIVSNKMDTRIAQR---NFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQ 165 + + IV+NK + ++ ++ E L F E + IS+ H G ++ + + +++ Sbjct: 234 GRHRGVYIVANKTEGQLTEQMSQTLEECGRLGFGEPLAISSSHGDGMADFATALVPHYEE 293 Query: 166 KYPNHPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLG 225 + N S + +P+++A+VGRPNVGKS+L+N +L Sbjct: 294 WEKEQEAAAEAGLESNRP----------LSEEEEAEEPVQLALVGRPNVGKSSLLNAVLR 343 Query: 226 YNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSR--ITESLEQKTVKKSMQSV 283 +R LTG G+TRD+V++ W W + + DTAG+RK T LE+ VK SM ++ Sbjct: 344 EDRALTGPTPGLTRDAVAVEWTWGGKAVRLVDTAGIRKSGSRDTTTPLEELAVKDSMNAI 403 Query: 284 RTCETTIVLLDATIP-FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAI 342 + +++LD + K +L I V G A+V+A NK D+ + + Sbjct: 404 HKAQVVVLVLDGSEGMLRKTELSIASMVATEGRALVVAANKSDLSGVSPGEYAKGVIRQV 463 Query: 343 KNL-PQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPP 401 ++L P + + ++ G G+ LM SV++ + W+ R+ T+ LN WL+K +PPP Sbjct: 464 EDLMPDVRAPPVLSVCALDGSGVGSLMRSVIKARERWRARVPTAVLNRWLRKIVFLHPPP 523 Query: 402 --TIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 + LKY+TQ++ PP F +F + IP Y+RY+ L+ F G+ +R+ Sbjct: 524 RDSTTGGACSLKYLTQVKRGPPEFRVFVNHLS-IPADYQRYITKNLQKEFGFHGMQVRLS 582 Query: 460 FQSSKNPY 467 + S N Y Sbjct: 583 LKKSVNVY 590 >gi|194098169|ref|YP_002001217.1| GTP-binding protein EngA [Neisseria gonorrhoeae NCCP11945] gi|239998620|ref|ZP_04718544.1| GTP-binding protein EngA [Neisseria gonorrhoeae 35/02] gi|240013743|ref|ZP_04720656.1| GTP-binding protein EngA [Neisseria gonorrhoeae DGI18] gi|240016181|ref|ZP_04722721.1| GTP-binding protein EngA [Neisseria gonorrhoeae FA6140] gi|240080325|ref|ZP_04724868.1| GTP-binding protein EngA [Neisseria gonorrhoeae FA19] gi|240112536|ref|ZP_04727026.1| GTP-binding protein EngA [Neisseria gonorrhoeae MS11] gi|240115276|ref|ZP_04729338.1| GTP-binding protein EngA [Neisseria gonorrhoeae PID18] gi|240117563|ref|ZP_04731625.1| GTP-binding protein EngA [Neisseria gonorrhoeae PID1] gi|240120813|ref|ZP_04733775.1| GTP-binding protein EngA [Neisseria gonorrhoeae PID24-1] gi|240123118|ref|ZP_04736074.1| GTP-binding protein EngA [Neisseria gonorrhoeae PID332] gi|240125369|ref|ZP_04738255.1| GTP-binding protein EngA [Neisseria gonorrhoeae SK-92-679] gi|240127821|ref|ZP_04740482.1| GTP-binding protein EngA [Neisseria gonorrhoeae SK-93-1035] gi|260440907|ref|ZP_05794723.1| GTP-binding protein EngA [Neisseria gonorrhoeae DGI2] gi|238690187|sp|B4RKD2|DER_NEIG2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|193933459|gb|ACF29283.1| essential Gc protein [Neisseria gonorrhoeae NCCP11945] gi|317163893|gb|ADV07434.1| GTP-binding protein EngA [Neisseria gonorrhoeae TCDC-NG08107] Length = 485 Score = 239 bits (610), Expect = 8e-61, Method: Compositional matrix adjust. Identities = 146/467 (31%), Positives = 231/467 (49%), Gaps = 30/467 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M TIA++G PNVGKSTLFNRL + K A+V + PG+TRDR YG + + ++DT G Sbjct: 1 MKPTIALIGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYFVIDTGGF 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + I +M QT A++EA ++FL+D + G+TP D I LR+ P+ + NK Sbjct: 61 EPVVDSGILHEMAKQTLQAVDEADAVVFLVDGRTGLTPQDKIIADRLRQSPRPVYLAVNK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + E Y L E IS H G ++ + ++ N P Sbjct: 121 GEGGDRAVLAAEFYELALGEPHVISGAHGDG-------VYYLIEEILENFP--------- 164 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 E ++ + P+ AV+GRPNVGKSTL+N +LG R++ +G TRD Sbjct: 165 -----------EPEAEEADAKHPV-FAVIGRPNVGKSTLVNAILGEKRVIAFDMAGTTRD 212 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ I + + P I DTAG+R+ ++ E++E+ +V K+MQ+V +++LDA Sbjct: 213 SIHIDFEREGKPFTIIDTAGVRRRGKVDEAVEKFSVIKAMQAVEAANVAVLVLDAQQDIA 272 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 QD I G A+V+A+NKWD +S++ + ++ + L + + IS Sbjct: 273 DQDATIAGFALEAGRALVVAVNKWDGISEERR--EQVKRDISRKLYFLDFAKFHFISALK 330 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G+D L S+ ++ T + LQ + PP +++Y Q +P Sbjct: 331 ERGIDGLFESIQAAYNAAMIKMPTPKITRVLQTAVGRQQPPRAGLVRPKMRYAHQGGMNP 390 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 P ++ + I +SY RYL R F+L G P+R+ + S+NPY Sbjct: 391 PVIVVHGNSLHAISDSYTRYLTQTFRKAFNLQGTPLRIQYNVSENPY 437 >gi|189500937|ref|YP_001960407.1| GTP-binding protein EngA [Chlorobium phaeobacteroides BS1] gi|238692267|sp|B3EMI7|DER_CHLPB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|189496378|gb|ACE04926.1| small GTP-binding protein [Chlorobium phaeobacteroides BS1] Length = 435 Score = 239 bits (609), Expect = 9e-61, Method: Compositional matrix adjust. Identities = 146/459 (31%), Positives = 239/459 (52%), Gaps = 32/459 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTLFNRL + K A+ + PG+TRDR A G F ++DT G K Sbjct: 5 VALVGRPNVGKSTLFNRLSRSKSAITDSTPGVTRDRHIASAEWQGRKFMVMDTGGYCHDK 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRK--KNIPIIIVSNKMD 122 + S+ + M +QT AI EA +ILF++D ++G+ D ++ L+K ++ P+ +V NK++ Sbjct: 65 D-SLNRAMMEQTLAAIAEADVILFMVDVRSGLAYLDLDMSRMLKKNFRDKPVYLVVNKVE 123 Query: 123 TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 TR E E ISA G ++L + F Sbjct: 124 TRQLAFEGEEFRRTGLTEPWFISAREGNGVADLLDEVVASF------------------- 164 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 P E T E +++K +A++GRPNVGKS+ +N LLG NR + G TRD++ Sbjct: 165 --PDET-TEEEDTAIK-------LAIIGRPNVGKSSFVNALLGTNRHIVSDIPGTTRDAI 214 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + + DTAG+RK ++I +E + ++ +S+ C+ ++L+DA EKQ Sbjct: 215 DSRLKRNGKEVLLIDTAGLRKRTKIDRGIEFYSSVRTDKSIERCDVALLLIDAEQGLEKQ 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D++I+ +V+ +NKWD++ + N + + + + I + IS T + Sbjct: 275 DIKIIQMAAEKRKGIVILVNKWDLIEKETNTSKQYSDRIYDQIGNLSWIPVLFISALTKK 334 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 L + + LE + + +I+TS LN +LQ+ + PP T R ++KY+TQI + P Sbjct: 335 NLYRAIDTALETGQNRQKKISTSELNRFLQQVLSELPPSTKSGRELKIKYVTQIGAHYPV 394 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 F FC P+ + +YKR+L RLR F +G+P+ ++ Sbjct: 395 FAFFCNNPDLVLSNYKRFLEKRLRQTFDFTGVPVSFRYR 433 >gi|254493337|ref|ZP_05106508.1| GTP-binding protein engA [Neisseria gonorrhoeae 1291] gi|268598604|ref|ZP_06132771.1| GTP-binding protein engA [Neisseria gonorrhoeae MS11] gi|268600957|ref|ZP_06135124.1| GTP-binding protein engA [Neisseria gonorrhoeae PID18] gi|268603264|ref|ZP_06137431.1| GTP-binding protein engA [Neisseria gonorrhoeae PID1] gi|268681744|ref|ZP_06148606.1| GTP-binding protein engA [Neisseria gonorrhoeae PID332] gi|268683971|ref|ZP_06150833.1| GTP-binding protein engA [Neisseria gonorrhoeae SK-92-679] gi|268686216|ref|ZP_06153078.1| GTP-binding protein engA [Neisseria gonorrhoeae SK-93-1035] gi|226512377|gb|EEH61722.1| GTP-binding protein engA [Neisseria gonorrhoeae 1291] gi|268582735|gb|EEZ47411.1| GTP-binding protein engA [Neisseria gonorrhoeae MS11] gi|268585088|gb|EEZ49764.1| GTP-binding protein engA [Neisseria gonorrhoeae PID18] gi|268587395|gb|EEZ52071.1| GTP-binding protein engA [Neisseria gonorrhoeae PID1] gi|268622028|gb|EEZ54428.1| GTP-binding protein engA [Neisseria gonorrhoeae PID332] gi|268624255|gb|EEZ56655.1| GTP-binding protein engA [Neisseria gonorrhoeae SK-92-679] gi|268626500|gb|EEZ58900.1| GTP-binding protein engA [Neisseria gonorrhoeae SK-93-1035] Length = 500 Score = 239 bits (609), Expect = 9e-61, Method: Compositional matrix adjust. Identities = 146/467 (31%), Positives = 231/467 (49%), Gaps = 30/467 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M TIA++G PNVGKSTLFNRL + K A+V + PG+TRDR YG + + ++DT G Sbjct: 16 MKPTIALIGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYFVIDTGGF 75 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + I +M QT A++EA ++FL+D + G+TP D I LR+ P+ + NK Sbjct: 76 EPVVDSGILHEMAKQTLQAVDEADAVVFLVDGRTGLTPQDKIIADRLRQSPRPVYLAVNK 135 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + E Y L E IS H G ++ + ++ N P Sbjct: 136 GEGGDRAVLAAEFYELALGEPHVISGAHGDG-------VYYLIEEILENFP--------- 179 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 E ++ + P+ AV+GRPNVGKSTL+N +LG R++ +G TRD Sbjct: 180 -----------EPEAEEADAKHPV-FAVIGRPNVGKSTLVNAILGEKRVIAFDMAGTTRD 227 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ I + + P I DTAG+R+ ++ E++E+ +V K+MQ+V +++LDA Sbjct: 228 SIHIDFEREGKPFTIIDTAGVRRRGKVDEAVEKFSVIKAMQAVEAANVAVLVLDAQQDIA 287 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 QD I G A+V+A+NKWD +S++ + ++ + L + + IS Sbjct: 288 DQDATIAGFALEAGRALVVAVNKWDGISEERR--EQVKRDISRKLYFLDFAKFHFISALK 345 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G+D L S+ ++ T + LQ + PP +++Y Q +P Sbjct: 346 ERGIDGLFESIQAAYNAAMIKMPTPKITRVLQTAVGRQQPPRAGLVRPKMRYAHQGGMNP 405 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 P ++ + I +SY RYL R F+L G P+R+ + S+NPY Sbjct: 406 PVIVVHGNSLHAISDSYTRYLTQTFRKAFNLQGTPLRIQYNVSENPY 452 >gi|291550925|emb|CBL27187.1| ribosome-associated GTPase EngA [Ruminococcus torques L2-14] Length = 442 Score = 239 bits (609), Expect = 9e-61, Method: Compositional matrix adjust. Identities = 142/465 (30%), Positives = 238/465 (51%), Gaps = 35/465 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFN L + +++V + PG+TRDR+Y F ++DT GI Sbjct: 6 VAIVGRPNVGKSTLFNVLAGEMISIVKDTPGVTRDRIYADVDWLDRDFTLIDTGGIEPDS 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 + I QM +Q ++AI+ A +I+F+ D K G+ D + LR+ P+++V NK+D Sbjct: 66 SDIILSQMREQAQIAIDTADVIIFITDVKQGLVDSDSKVADMLRRSGKPVVLVVNKVDNF 125 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + YE Y+L + V ISA LG ++ + F + P+ +++ Sbjct: 126 DKYMADVYEFYNLGIGDPVPISAASRLGLGDMLDAVTAHFPEWDPSEA---------DDD 176 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 P RIA+VG+PNVGKS++INRLLG NR++ + +G TRD++ Sbjct: 177 RP-------------------RIAIVGKPNVGKSSIINRLLGENRVIVSNIAGTTRDAID 217 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 DTAG+R+ ++I E LE+ ++ +++ +V + ++++DAT +QD Sbjct: 218 TEIVHDGKEYIFIDTAGLRRKNKIKEELERYSIIRTVSAVERADVVLMVIDATEGVTEQD 277 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTK---AIKNLPQIGDIYINTISGRT 360 +I G V++ +NKWD + +++ K + +P +Y++ ++G+ Sbjct: 278 AKIAGIAHERGKGVIIVVNKWDAIEKNDKTMKEYEGKIRQVLSYMPYAEIMYVSALTGQR 337 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 L D++ V+E L RI T LN + + PP+ + +L YITQ+ P Sbjct: 338 LPKLYDMIDMVIENQTL---RIATGVLNEIMTEAVAMQQPPSDKGKRLKLYYITQVAVKP 394 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 P+F+IF + SY RYL N++R F G ++ + K Sbjct: 395 PTFVIFVNDKELMHFSYTRYLENKIREAFGFRGTSLKFFIRERKE 439 >gi|238924644|ref|YP_002938160.1| GTP-binding protein EngA [Eubacterium rectale ATCC 33656] gi|259645876|sp|C4ZD63|DER_EUBR3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|238876319|gb|ACR76026.1| GTP-binding protein EngA [Eubacterium rectale ATCC 33656] gi|291525305|emb|CBK90892.1| ribosome-associated GTPase EngA [Eubacterium rectale DSM 17629] gi|291529236|emb|CBK94822.1| ribosome-associated GTPase EngA [Eubacterium rectale M104/1] Length = 441 Score = 239 bits (609), Expect = 9e-61, Method: Compositional matrix adjust. Identities = 143/464 (30%), Positives = 244/464 (52%), Gaps = 35/464 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFN L +++++V + PG+TRDR+Y F ++DT GI Sbjct: 6 VAIVGRPNVGKSTLFNALAGERISIVKDTPGVTRDRIYADVSWLDYNFTMIDTGGIEPES 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 I QM +Q ++AI+ A +I+F+ D K G+ D + LR+ + P+++V NK+D+ Sbjct: 66 GDVILSQMREQAQIAIDTADVIIFITDVKQGLVDSDSKVADMLRRSHKPVVLVVNKVDSF 125 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + YE Y+L + ISA LG ++ + K F +++K+++E Sbjct: 126 EKYMTDVYEFYNLGIGDPHPISAASMLGLGDMLDEVVKHFP-----------DSSKQDDE 174 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 + R+A+VG+PNVGKS+LIN+L +R++ +G TRD++ Sbjct: 175 DDRP-----------------RVAIVGKPNVGKSSLINKLAREDRVIVSDIAGTTRDAID 217 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + + DTAG+R+ ++I E +E+ ++ +++ +V + IV++DAT +QD Sbjct: 218 TAIKYDGKEYIFIDTAGLRRKNKIKEDIERYSIIRAVSAVERADVVIVVIDATEGVTEQD 277 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 +I G +++A+NKWD + N ++ K + L I I IS ++G+ Sbjct: 278 AKIAGIAHERGKGIIIAVNKWDAIEKDNNTVKQHTEKIRQILSFIPYAEILFISAKSGQR 337 Query: 364 LD---DLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 L+ +L+ V+E N + R+ T LN + + PPT + ++ Y+TQ+ P Sbjct: 338 LNKIFELIDVVIENNSM---RVATGVLNEIVTEAVAMQQPPTDKGKRLKIYYVTQVSVKP 394 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 P+F+IF N + SY RYL NR+R F G ++ + K Sbjct: 395 PTFVIFVNDKNLMHFSYTRYLENRIRDTFGFRGTALKFITRERK 438 >gi|86605901|ref|YP_474664.1| GTP-binding protein EngA [Synechococcus sp. JA-3-3Ab] gi|123506716|sp|Q2JV46|DER_SYNJA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|86554443|gb|ABC99401.1| GTP-binding protein EngA [Synechococcus sp. JA-3-3Ab] Length = 459 Score = 239 bits (609), Expect = 9e-61, Method: Compositional matrix adjust. Identities = 141/469 (30%), Positives = 236/469 (50%), Gaps = 30/469 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKS+L NRL + A+V + PGITRDRLY + NG +VDT G+ G Sbjct: 6 VAVVGRPNVGKSSLVNRLAGVRSAIVHDEPGITRDRLYQEVEWNGRRLRVVDTGGLVFGD 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 + + Q A+ EAH ++F++D + G+TP D + +LR++ +P+++ NK ++ Sbjct: 66 DSEFLPHIRQQAMAAMAEAHAVIFVVDGREGLTPADKELADWLRRQPLPVVVAVNKCESG 125 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 ++ + L E + SA H G +EL + P+ P Sbjct: 126 QLGLAQAAAFWELGLGEPIPCSAVHGNGVAELLEAVL-------PHLP------------ 166 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 E + P+ +A+VGRPNVGKS+L+NRL+G R + +G TRD+V Sbjct: 167 --------EVAQEAADEPDPIAVAIVGRPNVGKSSLLNRLVGSERAIVSPIAGTTRDAVD 218 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 W+ + DTAG+R+ SR+ +E ++ ++ ++++ + ++++DA +QD Sbjct: 219 TLVEWEGQSYRLIDTAGIRRKSRVEYGVEFFSINRAFKAIQRSDVVLLVIDALEGVTEQD 278 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKN-LPQIGDIYINTISGRTGE 362 R+ + G A ++ +NKWD V +K + T+ I+ L I + +S TG+ Sbjct: 279 QRLAGRIEEEGRACIIVVNKWDAVENKDTHTINEYTREIRERLYFIDWAPLLFVSALTGQ 338 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKT-QLQNPPPTIFNRYNRLKYITQIQSSPP 421 + V + RI TS +N LQ Q+PP + ++ Y TQ+ PP Sbjct: 339 RTHKIFAEVNTAVAAHRKRIATSVVNEVLQDALAWQSPPANRQGKQGKIYYGTQVAERPP 398 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +FL+F P+ E+Y+RYL R N +G PIR ++S + + Sbjct: 399 TFLLFVNDPDLFKENYRRYLEKHFRQNLDFTGTPIRFRWRSKSERLVGR 447 >gi|210622342|ref|ZP_03293111.1| hypothetical protein CLOHIR_01059 [Clostridium hiranonis DSM 13275] gi|210154330|gb|EEA85336.1| hypothetical protein CLOHIR_01059 [Clostridium hiranonis DSM 13275] Length = 441 Score = 239 bits (609), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 135/460 (29%), Positives = 235/460 (51%), Gaps = 28/460 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKST+FN+ +++++V + PG+TRDR++ + F ++DT GI Sbjct: 9 VAVVGRPNVGKSTIFNKFAGRRISIVEDTPGVTRDRIFTEVEWLNKYFTLIDTGGIEPKS 68 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + I QM +Q LA++ AH+IL ++D K GIT D I LR+ N P+I+V NK+D+ Sbjct: 69 DDIIVSQMRNQAMLAMDMAHVILMVVDGKQGITAADREIAETLRRTNKPVILVVNKIDSM 128 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 N Y+ Y L E IS + +G +L I F + N + +E++ Sbjct: 129 SQYDNVYDFYELGLGEPFAISGANSMGLGDLLDEIVANFPEGL---------NTEIDEDT 179 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 +++A+ G+PN GKS+++N +LG +R++ +G TRD+V Sbjct: 180 -------------------IKVAITGKPNAGKSSILNNILGEDRVIVSPIAGTTRDAVDT 220 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + DTAG+R+ S++ ES+E+ +V ++M +V + ++++DA +QD Sbjct: 221 YFEKNGQNYLLIDTAGLRRKSKVYESVEKYSVIRAMSAVDRADVVLIVIDAQEGVTEQDT 280 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 ++ + G A + +NKWD++ ++ + P + I +S T + + Sbjct: 281 KVAGIAHDEGKACIFVINKWDLIEKDNKTVKKYTDEIRTKFPFMAYAPILFVSALTNKRM 340 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 + ++ +V + RI+TS LN + + + N PP+ R ++ Y Q PP Sbjct: 341 NKILETVDFVASEHAKRISTSALNEVIGEAVMLNQPPSDKGRRLKIYYGAQTDVKPPKIT 400 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 +F SY+RYL NR+R NF G IR ++ K Sbjct: 401 LFINDKELTHFSYQRYLENRIRENFGFEGTSIRFEYRQKK 440 >gi|225849583|ref|YP_002729817.1| GTP-binding protein EngA [Persephonella marina EX-H1] gi|254783162|sp|C0QT02|DER_PERMH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|225645742|gb|ACO03928.1| ribosome-associated GTPase EngA [Persephonella marina EX-H1] Length = 447 Score = 239 bits (609), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 136/465 (29%), Positives = 235/465 (50%), Gaps = 22/465 (4%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 +Y +AIVG PNVGKS+LFNR++ K+ A+V + PG+TRDR+ A GV F +VDT G Sbjct: 1 MYRVAIVGRPNVGKSSLFNRIIGKRKAIVEDIPGVTRDRIVSTAEWRGVTFEVVDTGGYI 60 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 + + A + Q E + + + ++D K G+TP D I L + + P+ + NK+ Sbjct: 61 ESDKDTFAPYIRKQIEKELELSDAFILVVDGKEGLTPADKEIARILHRTDKPVYVAVNKI 120 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D ++ YE Y L F+++ +S+ G ++L + Q P + Sbjct: 121 DNPEMEKAIYEFYELGFEKVFPVSSIQKYGVADLLDAVV----QDIPEY----------E 166 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 E+ KE E KS V +++A+VG+PN GKS+L+N +LG R + G TRD Sbjct: 167 REASKEVGEKEEKSDV------IKVAIVGKPNAGKSSLLNAILGEERAVVSEIPGTTRDV 220 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 V + WK+ DTAG+RK S++ +E ++ +++ +++ + + ++DA + Sbjct: 221 VDTLFEWKDQKFLFLDTAGLRKKSKVDYGIEFFSIGRTLDAIKKADVIVHVIDAQQGATE 280 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTG 361 QD +I + V+ +NK D V K +L ++ + + L I I S + Sbjct: 281 QDTKIAHLIQKYTKPAVIVINKIDTVPPKSEVLNRIKNQVRERLYFIPYAPIVMTSAKNR 340 Query: 362 EGLDDLMVSVLEI-NKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 +G+ L+ + ++ N+ WK R+ T LN +++ PP+ + ++ Y TQ++ P Sbjct: 341 KGIKQLLKEITDVYNQSWK-RVGTGQLNRAIKQILSLRQPPSYHGKPLKIYYATQLEGKP 399 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 P FL+F P E + R+L N LR PI++ + + Sbjct: 400 PCFLLFVNHPEGFKEHFLRFLENNLRTVLGFEKAPIKLLLRGKEE 444 >gi|121593586|ref|YP_985482.1| GTP-binding protein EngA [Acidovorax sp. JS42] gi|166224299|sp|A1W581|DER_ACISJ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|120605666|gb|ABM41406.1| small GTP-binding protein [Acidovorax sp. JS42] Length = 447 Score = 239 bits (609), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 156/471 (33%), Positives = 248/471 (52%), Gaps = 36/471 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTLFNRL K + A+V + G+TRDR YG + ++DT G Sbjct: 5 IALVGRPNVGKSTLFNRLTKSRDAIVADFAGLTRDRHYGNGRQGKHEYIVIDTGGFEPDA 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + I ++M QT+ A+ EA +++F++D + G++ DH I ++LR+ P ++ NK + Sbjct: 65 SSGIYREMARQTQQAVAEADVVVFVVDVRGGLSAQDHDIANYLRRLGKPCVLAGNKAEGM 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + E Y L E+ +SA H G L + K PL + Sbjct: 125 QDSMHLAEFYELGLGEVHPVSAAHGQGVRSLVDLALK---------PLAL---------- 165 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 I E ++ KN+ +R+AV GRPNVGKSTLIN LG RL+ G TRD++S+ Sbjct: 166 --PEIEEEDAAAEKNV---IRLAVAGRPNVGKSTLINTWLGEERLVAFDMPGTTRDAISV 220 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + E+ DTAG+R+ ++ E++E+ +V K++Q++ + ++LLDAT QD Sbjct: 221 PFERNGQKFELIDTAGLRRKGKVFEAIEKFSVVKTLQAIESANVVLLLLDATQGVTDQDA 280 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSD--KLNLLQDLRT--KAIKNLPQIGDIYINTISGRT 360 I + +G AVV+A+NKWD V D + L + + T +K P ++ IS + Sbjct: 281 HIAGYILESGRAVVIAVNKWDAVDDYGRQQLERSIETCLSFLKFAP------LHFISAKK 334 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKT-QLQNPPPTIFNRYNRLKYITQIQSS 419 +G+ L S+++ K ++ T L LQ+ Q Q+P + R +++Y Q + Sbjct: 335 RQGIGPLWSSIIQAYKSANRKMPTPVLTRLLQEAVQFQSPKRSGMFR-PKMRYAHQGGMN 393 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 PP +I + ++YKR+L R R F L G P+R+ ++S NPY K Sbjct: 394 PPVIVIHGNSLEHVTDAYKRFLEARFRKEFDLVGTPLRIEMKTSSNPYTDK 444 Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 59/199 (29%), Positives = 94/199 (47%), Gaps = 12/199 (6%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + +A+ G PNVGKSTL N + ++ V + PG TRD + NG F ++DTAG+ Sbjct: 179 VIRLAVAGRPNVGKSTLINTWLGEERLVAFDMPGTTRDAISVPFERNGQKFELIDTAGLR 238 Query: 62 DGKNC--SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 +I K +T AI A+++L L+D+ G+T D I ++ + ++I N Sbjct: 239 RKGKVFEAIEKFSVVKTLQAIESANVVLLLLDATQGVTDQDAHIAGYILESGRAVVIAVN 298 Query: 120 KMDT------RIAQRNFYEIYS-LDFKEIVEISAEHDLGTSELHSVIFKIFK---QKYPN 169 K D + +R+ S L F + ISA+ G L S I + +K +K P Sbjct: 299 KWDAVDDYGRQQLERSIETCLSFLKFAPLHFISAKKRQGIGPLWSSIIQAYKSANRKMPT 358 Query: 170 HPLEMIENNKRNEESPKEN 188 L + +SPK + Sbjct: 359 PVLTRLLQEAVQFQSPKRS 377 >gi|300787849|ref|YP_003768140.1| GTP-binding protein EngA [Amycolatopsis mediterranei U32] gi|299797363|gb|ADJ47738.1| GTP-binding protein EngA [Amycolatopsis mediterranei U32] Length = 487 Score = 239 bits (609), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 146/459 (31%), Positives = 227/459 (49%), Gaps = 41/459 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI---A 61 +A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ A G F +VDT G A Sbjct: 44 LAVVGRPNVGKSTLVNRILGRREAVVQDVPGVTRDRVAYDAYWGGRKFTLVDTGGWEPDA 103 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 G S+A Q ELA+ A +L +ID+ G T D A++ LR+ P+++ +NK+ Sbjct: 104 TGLQASVAAQ----AELAMQTADAVLLVIDASVGATATDEAVSKVLRRSKKPVLLAANKV 159 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D + ++SL E +SA H + +L I K Sbjct: 160 DDDRLLADTASLWSLGLGEPHPVSALHGRSSGDLLDAILKALP----------------- 202 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 ESP+E + S P R+A+VG+PNVGKS+L+N+L G R + S +G T D Sbjct: 203 -ESPREGGAA--------TSGPRRVALVGKPNVGKSSLLNKLSGEERSVVDSVAGTTVDP 253 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 V DTAG+RK E ++ ++ E IVLLDA P + Sbjct: 254 VDSLVELDGETWRFVDTAGLRKRVNFAAGAEYYASLRTKTAIDAAEVAIVLLDAAEPLSE 313 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVSD--KLNLLQDLRTKAIKNLPQIGDIYINTISGR 359 QDLR++ V G A VLA NKWD+V + + ++++L + + +P + I+ ++GR Sbjct: 314 QDLRVLTMVVEAGRACVLAFNKWDLVDEDRRYAMVREL-DRGLVRVPWAEKVNISALTGR 372 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 + L + + L W R+ T LN+WL PPP + ++ + TQ Sbjct: 373 SVRKLAPALRTALAS---WDKRVPTGQLNAWLSDLVAATPPPVRSGKQPKVLFATQAGIR 429 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 PP+ ++F T + Y+R++ + R F +G P+R+ Sbjct: 430 PPTLVLFTT--GFLEAGYRRFIERKFREQFGFTGSPVRV 466 >gi|313668681|ref|YP_004048965.1| GTP-binding protein [Neisseria lactamica ST-640] gi|313006143|emb|CBN87604.1| putative GTP-binding protein [Neisseria lactamica 020-06] Length = 485 Score = 239 bits (609), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 147/467 (31%), Positives = 231/467 (49%), Gaps = 30/467 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M TIA+VG PNVGKSTLFNRL + K A+V + PG+TRDR YG + + ++DT G Sbjct: 1 MKPTIALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVIDTGGF 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + I +M QT A++EA ++FL+D + G+TP D I LR+ P+ + NK Sbjct: 61 EPVVDSGILHEMAKQTLQAVDEADAVVFLVDGRTGLTPQDKIIADRLRQSPRPVYLAVNK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + E Y L E IS H G ++ + ++ N P Sbjct: 121 GEGGNRAVLAAEFYELALGEPHVISGAHGDG-------VYYLIEEILENFP--------- 164 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 E ++ + P+ AV+GRPNVGKSTL+N +LG R++ +G TRD Sbjct: 165 -----------EPEAEEADAKHPV-FAVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRD 212 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ I + + P I DTAG+R+ ++ E++E+ +V K+MQ+V +++LDA Sbjct: 213 SIHIDFEREGKPFTIIDTAGVRRRGKVDEAVEKFSVIKAMQAVEAANVAVLVLDAQQDIA 272 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 QD I G A+V+A+NKWD +S++ + ++ + L + + IS Sbjct: 273 DQDATIAGFALEAGRALVVAVNKWDGISEERR--EQVKRDINRKLYFLDFAKFHFISALK 330 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G+D L S+ ++ T + LQ + PP +++Y Q +P Sbjct: 331 EHGIDGLFDSIQAAYNAAMIKMPTPKITRVLQTAVERQQPPRAGLVRPKMRYAHQGGMNP 390 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 P ++ + I +SY RYL R F+L G P+R+ + S+NPY Sbjct: 391 PVIVVHGNSLHAISDSYTRYLTQTFRKAFNLQGTPLRIQYNVSENPY 437 >gi|161833759|ref|YP_001597955.1| GTP-binding protein EngA [Candidatus Sulcia muelleri GWSS] gi|293977869|ref|YP_003543299.1| ribosome-associated GTPase EngA [Candidatus Sulcia muelleri DMIN] gi|229807527|sp|A8Z608|DER_SULMW RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|152206249|gb|ABS30559.1| GTP-binding protein EngA [Candidatus Sulcia muelleri GWSS] gi|292667800|gb|ADE35435.1| ribosome-associated GTPase EngA [Candidatus Sulcia muelleri DMIN] Length = 433 Score = 238 bits (608), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 154/461 (33%), Positives = 245/461 (53%), Gaps = 30/461 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M ++IVG PNVGKSTLFNR++ K ++V + GITRDR YG NG+ F ++DT G Sbjct: 1 MTKIVSIVGRPNVGKSTLFNRIIGYKKSIVNSKSGITRDRNYGFCNWNGIEFCLIDTGGY 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + K++ +Q A+ E+ +ILFL+D I D+ I+ +RK I +V NK Sbjct: 61 TNESKNIFDKKICEQFLFALAESDVILFLVDPSNDILGIDYDISKRIRKLKKSIYLVINK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D N Y+ + IS+ + GT +L I + N + Sbjct: 121 IDIYKNIYNTYKYCKFGITKTYCISSINGTGTEKLLDSI---------------VSNFDK 165 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 N + K+NI RIA+VGRPNVGKSTLIN LL N+ + + SG TRD Sbjct: 166 NIKIYKKNIP--------------RIAIVGRPNVGKSTLINTLLNKNKNIVTNISGTTRD 211 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ + ++ + DTAG+RK I E +E +V ++++S++ + +++++D+ FE Sbjct: 212 SIDVLYSKFGIECILVDTAGIRKKKNIKEDIEFYSVMRAIKSIQNSDVSLLIIDSKSGFE 271 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 QD+ I + N +VL +NKWD+ ++ L+ K K + D+ I S T Sbjct: 272 SQDINIFKIIENNNKGIVLLINKWDIFNNNY-LINSYENKIKKIIAPFNDVPIFFTSSFT 330 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 + + + + ++I + RI TS LN + +NP P+I + +KY +QIQ+ Sbjct: 331 KKDIIKSIKTAVKITFNLRLRIKTSLLNKIILPILNKNPHPSINGKLITIKYCSQIQTYN 390 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 P F+ F +PN I ESYKR++ N +R F+ +GIPI++ F+ Sbjct: 391 PQFIFFTNYPNNIKESYKRFIENNIREKFNFTGIPIKILFR 431 >gi|260662130|ref|ZP_05863026.1| ribosome-associated GTPase EngA [Lactobacillus fermentum 28-3-CHN] gi|260553513|gb|EEX26405.1| ribosome-associated GTPase EngA [Lactobacillus fermentum 28-3-CHN] Length = 437 Score = 238 bits (608), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 140/462 (30%), Positives = 238/462 (51%), Gaps = 32/462 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNR+ +++A+V + PG+TRDRLY G F+++DT GI + Sbjct: 6 VAIVGRPNVGKSTLFNRIAGERIAIVEDTPGVTRDRLYAHGEWLGKNFSMIDTGGI-EMS 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + Q+ Q E+AI EA +I+ +++ + G+T D + L + N P+++ NK+D Sbjct: 65 DQPLLTQIRQQAEIAIEEADVIIMVVNVENGVTDADEQVAQILYRSNKPVVLAVNKVDNP 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + Y+ Y L E +S+ H +G ++ + + F Sbjct: 125 ERRLDVYDFYQLGLGEPYPVSSVHGVGLGDMLDAVIENFA-------------------- 164 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 + + +R + +GRPNVGKS+L+N +LG NR++ +G TRD+++ Sbjct: 165 ---------EEDAEEEDDRIRFSFIGRPNVGKSSLVNAILGENRVIVSDMAGTTRDAINT 215 Query: 245 SWNWKN-HPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + K+ + DTAG++K ++ E+ E+ + +SM+++ + +V+L+A + D Sbjct: 216 QFTAKDGREFTMVDTAGIKKKGKLYENTERYALMRSMRAIDNSDVVLVVLNAEEGIRELD 275 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQ-IGDIYINTISGRTGE 362 I G AV++ +NKWD + D+ T I++ Q + I +S +T + Sbjct: 276 KHIAGYAHEAGRAVIIVVNKWDTIPDRDQRTMTDFTNLIRHEFQYLSYAPIVFVSAKTKQ 335 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 L L + E RI ++ LN L NP P+ R R+ Y TQ+ +PP+ Sbjct: 336 RLSRLPEMIEEAYDHQHRRIQSAVLNDVLMDALAANPTPSSNGRRLRVYYATQVAVAPPT 395 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 F+IF P+ + SY RYL NR+R F +G PIR+ + K Sbjct: 396 FVIFVNDPDLMHFSYARYLENRIRAAFDFTGTPIRLIKRRRK 437 >gi|325127951|gb|EGC50852.1| GTP-binding protein [Neisseria meningitidis N1568] gi|325134015|gb|EGC56670.1| GTP-binding protein [Neisseria meningitidis M13399] gi|325202361|gb|ADY97815.1| GTP-binding protein [Neisseria meningitidis M01-240149] gi|325206317|gb|ADZ01770.1| GTP-binding protein [Neisseria meningitidis M04-240196] gi|325207887|gb|ADZ03339.1| GTP-binding protein [Neisseria meningitidis NZ-05/33] Length = 485 Score = 238 bits (608), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 147/467 (31%), Positives = 231/467 (49%), Gaps = 30/467 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M TIA+VG PNVGKSTLFNRL + K A+V + PG+TRDR YG + + ++DT G Sbjct: 1 MKPTIALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVIDTGGF 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + I +M QT A++EA ++FL+D + G+TP D I LR+ P+ + NK Sbjct: 61 EPVVDSGILHEMAKQTLQAVDEADAVVFLVDGRTGLTPQDKIIADRLRQSPRPVYLAVNK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + E Y L + IS H G ++ + ++ N P +E Sbjct: 121 GEGGNRAVLAAEFYELALGDPYVISGAHGDG-------VYYLIEEILENFPEPEVEE--- 170 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 ++ K V AV+GRPNVGKSTL+N +LG R++ +G TRD Sbjct: 171 ----------ADAKHPV--------FAVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRD 212 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ I + + P I DTAG+R+ ++ E++E+ +V K+MQ+V +++LDA Sbjct: 213 SIHIDFEREGKPFTIIDTAGVRRRGKVDEAVEKFSVIKAMQAVEAANVAVLVLDAQQDIA 272 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 QD I G A+V+A+NKWD +S++ + ++ + L + + IS Sbjct: 273 DQDATIAGFALEAGRALVVAVNKWDGISEERR--EQVKRDINRKLYFLDFAKFHFISALK 330 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G+D L S+ ++ T + LQ + PP +++Y Q +P Sbjct: 331 ERGIDGLFDSIQAAYNAAMIKMPTPKITRVLQSAIERQQPPRAGLVRPKMRYAHQGGMNP 390 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 P ++ + I +SY RYL R F+L G P+R+ + S+NPY Sbjct: 391 PVIVVHGNSLHAISDSYTRYLTQTFRKAFNLQGTPLRIQYNVSENPY 437 >gi|302866909|ref|YP_003835546.1| ribosome-associated GTPase EngA [Micromonospora aurantiaca ATCC 27029] gi|315506749|ref|YP_004085636.1| ribosome-associated gtpase enga [Micromonospora sp. L5] gi|302569768|gb|ADL45970.1| ribosome-associated GTPase EngA [Micromonospora aurantiaca ATCC 27029] gi|315413368|gb|ADU11485.1| ribosome-associated GTPase EngA [Micromonospora sp. L5] Length = 468 Score = 238 bits (608), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 150/462 (32%), Positives = 232/462 (50%), Gaps = 35/462 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI-ADG 63 +A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ A NG F +VDT G D Sbjct: 28 VAVVGRPNVGKSTLVNRIIGRRQAVVEDIPGVTRDRVPYDAQWNGRAFTVVDTGGWEPDA 87 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 K+ + A + + A ++LF++D+ G T D A LR+ P+I+V+NK D Sbjct: 88 KDRAAAIAAQAEIAVVT--ADVVLFVVDAMVGSTDVDEAAVKMLRRSAKPVILVANKADN 145 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + ++SL E +SA H G+ +L I P P +++EN R Sbjct: 146 TTIEMEATSLWSLGLGEPFPVSALHGRGSGDLLDAILDAL----PEAP-KIVENRPRG-- 198 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 P R+A+VGRPNVGKS+L+NR G R + S +G T D V Sbjct: 199 -------------------PRRVALVGRPNVGKSSLLNRFSGEERAVVDSVAGTTVDPVD 239 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 ++ DTAG+RK E ++ ++ E +VL+D++ +QD Sbjct: 240 SLVEIGGETWQLVDTAGLRKRVGKASGTEYYASLRTASAIEAAEVAVVLIDSSEVISEQD 299 Query: 304 LRIVDSVFNTGHAVVLALNKWDMV-SDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 RI+ V +G A+V+A NKWD+V D+ L + ++ +P I +N +S +TG Sbjct: 300 QRILTMVVESGRALVIAFNKWDLVDGDRRYYLDKEIDRELRRIPWA--IRLN-LSAKTGR 356 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 +D L ++ + W+TRI T+ LN WL P P R R+ + TQ ++PP Sbjct: 357 AVDKLAPALRKALASWETRIPTAQLNQWLTALVQATPHPVRGGRAPRILFATQAGAAPPR 416 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 F++F T P + Y+R++ +LR F G PI + + K Sbjct: 417 FVLFTTGP--LDAGYQRFVERKLREEFGYEGSPIEISVRPRK 456 >gi|89099128|ref|ZP_01172007.1| GTP-binding protein EngA [Bacillus sp. NRRL B-14911] gi|89086258|gb|EAR65380.1| GTP-binding protein EngA [Bacillus sp. NRRL B-14911] Length = 436 Score = 238 bits (608), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 148/460 (32%), Positives = 243/460 (52%), Gaps = 29/460 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKST+FNR+V +++++V + PG+TRDR+Y A + FNI+DT GI G Sbjct: 6 IAIVGRPNVGKSTIFNRIVGERISIVEDIPGVTRDRIYSSAEWLNLDFNIIDTGGIDIGD 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +Q+ Q E+AI EA +ILFL + + G+T D A+ L K P+++ NK+D Sbjct: 66 EPFL-EQIRQQAEIAIEEADVILFLTNGREGVTSADEAVAKILYKSKKPVVLGVNKIDNP 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + Y+ Y+L F E + IS H LG +L +E+ Sbjct: 125 DMRDQIYDFYALGFGEPIPISGSHGLGLGDLL-------------------------DEA 159 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 K ++ K ++ ++ +++GRPNVGKS+L+N +LG R++ + +G TRD+V Sbjct: 160 AKHFPDTKDKDYGDDV---IKFSLIGRPNVGKSSLVNAILGEERVIVSNIAGTTRDAVDS 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + I DTAGMRK ++ ES E+ +V ++++++ + +V++DA +QD Sbjct: 217 LLTYNGDQYVIIDTAGMRKKGKVYESTEKYSVLRALRAIERSDVVLVVIDADEGILEQDK 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 +I G AVV+ +NKWD V ++ T ++ + I +S T + + Sbjct: 277 KIAGYAHEAGRAVVIVVNKWDAVEKDEKTMKAFETNIREHFQFLDYAPIVFLSALTKKRI 336 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 L+ + + ++ R+ TS LN + NP PT + R+ Y TQ+ PP F+ Sbjct: 337 HTLIPQINQASENHSMRVETSVLNDVVMDAVAMNPTPTDKGKRLRIYYTTQVAVKPPVFV 396 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 +F P + SY+R+L NR+R F G PI++ + K Sbjct: 397 VFVNDPELMHFSYERFLENRIRDAFGFEGTPIKIFARERK 436 >gi|323343319|ref|ZP_08083546.1| ribosome-associated GTPase EngA [Prevotella oralis ATCC 33269] gi|323095138|gb|EFZ37712.1| ribosome-associated GTPase EngA [Prevotella oralis ATCC 33269] Length = 458 Score = 238 bits (608), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 142/458 (31%), Positives = 238/458 (51%), Gaps = 30/458 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +AIVG PNVGKSTLFNRL + + A+V + G TRDR YG+ NG F++VDT G Sbjct: 22 MANLVAIVGRPNVGKSTLFNRLTQSRKAIVSDTAGTTRDRQYGKCNWNGREFSVVDTGGW 81 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + + Q +A EA +++FL+D+ G+T +D + LR+ +P+++V+NK Sbjct: 82 VVNSDDIFEDAIRRQVLVATEEADIVIFLVDTMTGVTDWDEDVAQILRRSKLPVLLVANK 141 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D + Y L + V +SA GT +L ++ K + + I Sbjct: 142 VDNSSDYYQAADFYRLGLGDPVCVSAATGGGTGDLLDLLITKLKTDDFDDVQDDIP---- 197 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 R AVVGRPNVGKS++IN +G +R + +G TRD Sbjct: 198 ------------------------RFAVVGRPNVGKSSIINAFIGEDRNIVTEIAGTTRD 233 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ ++ + DTAG+R+ +++TE LE +V +S++S+ + I+++DAT E Sbjct: 234 SIYTRFDKFGFDFYLVDTAGIRRKNKVTEDLEFYSVMRSIRSIENSDVCILMIDATRGIE 293 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDK-LNLLQDLRTKAIKNLPQIGDIYINTISGR 359 QD+ I + ++V+ +NKWD+V +K N+++ + + D I S Sbjct: 294 AQDMNIFQLIQKNNKSLVVVVNKWDLVENKDQNVIKTFENAIRERMAPFVDFPIIFASAL 353 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 T + + ++ + ++ K + TS LN + PPP+I +Y ++KY TQ+ ++ Sbjct: 354 TKQRIFKVLETAKQVYLNRKAHVGTSKLNEVMLPIIEATPPPSIKGKYIKIKYCTQLPNT 413 Query: 420 P-PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 PSF+ + P + E Y+R+L N++R N+S+ G PI Sbjct: 414 QIPSFVFYANLPQYVKEPYRRFLENKIRENWSMHGCPI 451 >gi|254804723|ref|YP_003082944.1| putative GTP-binding protein [Neisseria meningitidis alpha14] gi|254668265|emb|CBA05137.1| putative GTP-binding protein [Neisseria meningitidis alpha14] gi|254673335|emb|CBA08527.1| putative GTP-binding protein [Neisseria meningitidis alpha275] gi|325132265|gb|EGC54958.1| GTP-binding protein [Neisseria meningitidis M6190] gi|325137764|gb|EGC60339.1| GTP-binding protein [Neisseria meningitidis ES14902] Length = 485 Score = 238 bits (608), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 147/467 (31%), Positives = 231/467 (49%), Gaps = 30/467 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M TIA+VG PNVGKSTLFNRL + K A+V + PG+TRDR YG + + ++DT G Sbjct: 1 MKPTIALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVIDTGGF 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + I +M QT A++EA ++FL+D + G+TP D I LR+ P+ + NK Sbjct: 61 EPVVDSGILHEMAKQTLQAVDEADAVVFLVDGRTGLTPQDKIIADRLRQSPRPVYLAVNK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + E Y L + IS H G ++ + ++ N P +E Sbjct: 121 GEGGNRAVLAAEFYELALGDPYVISGAHGDG-------VYYLIEEILENFPEPEVEE--- 170 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 ++ K V AV+GRPNVGKSTL+N +LG R++ +G TRD Sbjct: 171 ----------ADAKHPV--------FAVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRD 212 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ I + + P I DTAG+R+ ++ E++E+ +V K+MQ+V +++LDA Sbjct: 213 SIHIDFEREGKPFTIIDTAGVRRRGKVDEAVEKFSVIKAMQAVEAANVAVLVLDAQQDIA 272 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 QD I G A+V+A+NKWD +S++ + ++ + L + + IS Sbjct: 273 DQDATIAGFALEAGRALVVAVNKWDGISEERR--EQVKRDINRKLYFLDFAKFHFISALK 330 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G+D L S+ ++ T + LQ + PP +++Y Q +P Sbjct: 331 ERGIDGLFDSIQAAYNAAMIKMPTPKITRVLQSAIERQQPPRAGLVRPKMRYAHQGGMNP 390 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 P ++ + I +SY RYL R F+L G P+R+ + S+NPY Sbjct: 391 PVIVVHGNSLHAISDSYTRYLTQTFRKAFNLQGTPLRIQYNVSENPY 437 >gi|329939204|ref|ZP_08288578.1| GTP-binding protein EngA [Streptomyces griseoaurantiacus M045] gi|329302089|gb|EGG45982.1| GTP-binding protein EngA [Streptomyces griseoaurantiacus M045] Length = 513 Score = 238 bits (608), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 151/478 (31%), Positives = 242/478 (50%), Gaps = 53/478 (11%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD-- 62 +A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ +A G F +VDT G Sbjct: 76 LAVVGRPNVGKSTLVNRIIGRREAVVEDKPGVTRDRVTYEAEWAGRRFKVVDTGGWEQDV 135 Query: 63 -GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 G + S+A Q E AI A ++F++D+K G T D A+ LRK P+++ +NK+ Sbjct: 136 LGIDASVAA----QAEYAIEAADAVVFVVDAKVGATDTDEAVVRLLRKAGKPVVLCANKV 191 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D + + ++SL E +SA H GT ++ + + Sbjct: 192 DGPSGEADASYLWSLGLGEPHPVSALHGRGTGDMLDKVLEALP----------------- 234 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 E+P+EN G + P RIA++GRPNVGKS+L+N++ G R++ +G TRD Sbjct: 235 -EAPRENFGGTG------LGGPRRIALIGRPNVGKSSLLNKVAGEERVVVNELAGTTRDP 287 Query: 242 V-------SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLD 294 V ++W + DTAG+RK + + + ++ +V E ++LLD Sbjct: 288 VDELIELGGVTWKF-------VDTAGIRKRVHLQQGADYYASLRTAAAVEKAEVAVILLD 340 Query: 295 ATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSD--KLNLLQDLRTKAIKNLPQIGDIY 352 A+ QD RIV G AVVLA NKWD + + + L +++ T+ L Q+ Sbjct: 341 ASENISVQDQRIVTMAVEAGRAVVLAFNKWDTLDEERRYYLEREIETE----LGQVAWAP 396 Query: 353 INTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKY 412 +S RTG ++ L+ ++ W+TR+ T LN++L + +P P + R+ + Sbjct: 397 RVNVSARTGRHMEKLVPAIETALAGWETRVPTGRLNAFLGELVAAHPHPVRGGKQPRILF 456 Query: 413 ITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 TQ + PP F++F + I Y+R++ RLR FS G PI + + + KK Sbjct: 457 GTQAGTKPPRFVLFAS--GFIEAGYRRFIERRLREEFSFEGTPIHISVRVREKRGAKK 512 >gi|326803715|ref|YP_004321533.1| ribosome biogenesis GTPase Der [Aerococcus urinae ACS-120-V-Col10a] gi|326651282|gb|AEA01465.1| ribosome biogenesis GTPase Der [Aerococcus urinae ACS-120-V-Col10a] Length = 436 Score = 238 bits (608), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 133/455 (29%), Positives = 236/455 (51%), Gaps = 29/455 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKST+FNR+ +++++V + PG+TRDR+Y Q G ++DT GI + Sbjct: 6 IAIVGRPNVGKSTIFNRIAGQRISIVEDVPGVTRDRVYAQGEWLGRKLRLIDTGGI-EFN 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +Q+ Q E+A+ EA LI+ + G+T D I L+K + P+++ NK+D Sbjct: 65 DEPFVEQIRLQAEIAVEEADLIIMMTSVVDGVTKTDEMIARLLQKSDKPVLLAVNKVDNP 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 Q Y+ Y L + IS H LG +L + I+++F PL Sbjct: 125 ELQAEIYDFYRLGLNDPYPISGAHGLGIGDLLAEIYRLF-------PL------------ 165 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 + + + A++GRPNVGKS+L+N +LG NR++ +G TRD+V Sbjct: 166 ---------EDEDSEDEETISFALIGRPNVGKSSLVNAILGENRVIVSDIAGTTRDAVDT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 +++ +I DTAG+R+ R++ES E+ +V +SM ++ +++L+A QD Sbjct: 217 YFSYNERSFKIIDTAGIRRKGRVSESTEKYSVMRSMSAIEQASVVLLVLNAEEGIRDQDK 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 + G +++ +NKWD + + +++ + I +S ++ + L Sbjct: 277 TVAGYAHEAGKGIIILVNKWDALKKDSHTMKEFEDNIRAQFQFLSYAPILFVSAKSKQRL 336 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 D + ++++++ + RI +S LN L NP P+ + R+ Y+TQ+ PP+F+ Sbjct: 337 DKIPDLIIQVHENFNRRIQSSLLNQVLADAIRINPAPSDKGKKLRVYYMTQVSVGPPTFV 396 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 + + + SY+R+L N++R F SG P+ + Sbjct: 397 VMVNDTDLMHFSYERFLANQIRQAFDFSGTPLHII 431 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 65/127 (51%), Gaps = 12/127 (9%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI--- 60 + A++G PNVGKS+L N ++ + +V + G TRD + N F I+DTAGI Sbjct: 177 SFALIGRPNVGKSSLVNAILGENRVIVSDIAGTTRDAVDTYFSYNERSFKIIDTAGIRRK 236 Query: 61 ----ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIII 116 + S+ + M+ AI +A ++L +++++ GI D + + + III Sbjct: 237 GRVSESTEKYSVMRSMS-----AIEQASVVLLVLNAEEGIRDQDKTVAGYAHEAGKGIII 291 Query: 117 VSNKMDT 123 + NK D Sbjct: 292 LVNKWDA 298 Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 56/184 (30%), Positives = 80/184 (43%), Gaps = 34/184 (18%) Query: 202 KPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGM 261 K L IA+VGRPNVGKST+ NR+ G + G+TRD V W + + DT G+ Sbjct: 2 KTLNIAIVGRPNVGKSTIFNRIAGQRISIVEDVPGVTRDRVYAQGEWLGRKLRLIDTGGI 61 Query: 262 RKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL-----RIVDSVFNTGHA 316 E ++ V++ + L A I E+ DL +VD V T Sbjct: 62 -------EFNDEPFVEQ------------IRLQAEIAVEEADLIIMMTSVVDGVTKTDEM 102 Query: 317 VVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIY---INT---ISGRTGEGLDDLMVS 370 + L K SDK LL + + +I D Y +N ISG G G+ DL+ Sbjct: 103 IARLLQK----SDKPVLLAVNKVDNPELQAEIYDFYRLGLNDPYPISGAHGLGIGDLLAE 158 Query: 371 VLEI 374 + + Sbjct: 159 IYRL 162 >gi|304387839|ref|ZP_07370013.1| ribosome-associated GTPase EngA [Neisseria meningitidis ATCC 13091] gi|304338104|gb|EFM04240.1| ribosome-associated GTPase EngA [Neisseria meningitidis ATCC 13091] Length = 536 Score = 238 bits (607), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 148/467 (31%), Positives = 228/467 (48%), Gaps = 30/467 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M TIA+VG PNVGKSTLFNRL + K A+V + PG+TRDR YG + + ++DT G Sbjct: 52 MKPTIALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVIDTGGF 111 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + I +M QT A++EA ++FL+D + G+TP D I LR+ P+ + NK Sbjct: 112 EPVVDSGILHEMAKQTLQAVDEADAVVFLVDGRTGLTPQDKIIADRLRQSPRPVYLAVNK 171 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + E Y L + IS H G L I + F + Sbjct: 172 GEGGNRAVLAAEFYELALGDPYVISGAHGDGVYYLIEDILETFPEP-------------- 217 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 E ++ K V AV+GRPNVGKSTL+N +LG R++ +G TRD Sbjct: 218 ------EAEEADAKHPV--------FAVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRD 263 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ I + + P I DTAG+R+ ++ E++E+ +V K+MQ+V +++LDA Sbjct: 264 SIHIDFEREGKPFTIIDTAGVRRRGKVDEAVEKFSVIKAMQAVEAANVAVLVLDAQQDIA 323 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 QD I G A+V+A+NKWD +S++ + ++ + L + + IS Sbjct: 324 DQDATIAGFALEAGRALVVAVNKWDGISEERR--EQVKRDINRKLYFLDFAKFHFISALK 381 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G+D L S+ ++ T + LQ + PP +++Y Q +P Sbjct: 382 ERGIDGLFDSIQAAYNAAMIKMPTPKITRVLQSAIERQQPPRAGLVRPKMRYAHQGGMNP 441 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 P ++ + I +SY RYL R F+L G P+R+ + S+NPY Sbjct: 442 PVIVVHGNSLHAISDSYTRYLTQTFRKAFNLQGTPLRIQYNVSENPY 488 >gi|313897444|ref|ZP_07830987.1| ribosome biogenesis GTPase Der [Clostridium sp. HGF2] gi|312957814|gb|EFR39439.1| ribosome biogenesis GTPase Der [Clostridium sp. HGF2] Length = 436 Score = 238 bits (607), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 133/454 (29%), Positives = 229/454 (50%), Gaps = 30/454 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST+FNR++ ++ ++V + PG+TRDR+YG+A F ++DT GI Sbjct: 6 VAIVGRPNVGKSTIFNRIIGERKSIVEDTPGVTRDRIYGKAEWLTREFRVIDTGGIQLA- 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N ++N Q E+AI+EA I+F++ K G+T D + L K P+I+ NK+D Sbjct: 65 NQDFQTEINMQVEIAIDEADCIVFVVSGKDGLTHDDEYVARLLHKTKKPVILAVNKVDDF 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 YE YSL + + +S H +G ++ + +K E++ Sbjct: 125 AQNDAIYEFYSLGLGDPLAVSGAHGIGIGDVLDAVIHALPEK---------------EKN 169 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 + +T + V+GRPNVGKS+L+N +L R++ + G TRD++ Sbjct: 170 EYDGMT--------------KFCVIGRPNVGKSSLVNAILNQERVIVSNIEGTTRDAIDT 215 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + + DTAG+RK ++ E++E+ +V ++M ++ + +V++D QD Sbjct: 216 PFKREGKEYVVIDTAGIRKRGKVYENIEKYSVLRAMSAIERSDVVLVVIDGEKGIRDQDK 275 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 + G VV+ NKWD V + + + + + +S + + Sbjct: 276 HVAGYAHEAGKGVVIVYNKWDAVEKDEQTMHTIEKEIRAQFLYLSYAPVLFVSALKKQRI 335 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 ++ + E++ RI T+ LN + QL PPPT + ++ Y +Q+ +PP+F+ Sbjct: 336 HTILPVIDEVHDYSVLRIQTNVLNEVIMDAQLMTPPPTHKGQRLKIYYASQVSVAPPTFV 395 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 +F P + SYKRYL NRLR F +G +R+ Sbjct: 396 LFVNDPELLHFSYKRYLENRLREAFGFTGTTLRI 429 >gi|229545835|ref|ZP_04434560.1| GTP-binding protein EngA [Enterococcus faecalis TX1322] gi|229550027|ref|ZP_04438752.1| GTP-binding protein EngA [Enterococcus faecalis ATCC 29200] gi|255972808|ref|ZP_05423394.1| GTP-binding protein engA [Enterococcus faecalis T1] gi|256619052|ref|ZP_05475898.1| GTP-binding protein engA [Enterococcus faecalis ATCC 4200] gi|256762478|ref|ZP_05503058.1| GTP-binding protein engA [Enterococcus faecalis T3] gi|256853114|ref|ZP_05558484.1| GTP-binding protein engA [Enterococcus faecalis T8] gi|256958969|ref|ZP_05563140.1| GTP-binding protein engA [Enterococcus faecalis DS5] gi|256965136|ref|ZP_05569307.1| GTP-binding protein engA [Enterococcus faecalis HIP11704] gi|257079000|ref|ZP_05573361.1| GTP-binding protein engA [Enterococcus faecalis JH1] gi|257085194|ref|ZP_05579555.1| GTP-binding protein engA [Enterococcus faecalis Fly1] gi|257086755|ref|ZP_05581116.1| GTP-binding protein engA [Enterococcus faecalis D6] gi|257416082|ref|ZP_05593076.1| GTP-binding protein engA [Enterococcus faecalis AR01/DG] gi|257422630|ref|ZP_05599620.1| GTP-binding protein engA [Enterococcus faecalis X98] gi|294781352|ref|ZP_06746695.1| ribosome-associated GTPase EngA [Enterococcus faecalis PC1.1] gi|300861220|ref|ZP_07107307.1| ribosome-associated GTPase EngA [Enterococcus faecalis TUSoD Ef11] gi|307271029|ref|ZP_07552312.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX4248] gi|307273236|ref|ZP_07554482.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0855] gi|307274973|ref|ZP_07556136.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX2134] gi|307289094|ref|ZP_07569050.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0109] gi|312900749|ref|ZP_07760046.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0470] gi|312951482|ref|ZP_07770378.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0102] gi|229304833|gb|EEN70829.1| GTP-binding protein EngA [Enterococcus faecalis ATCC 29200] gi|229309034|gb|EEN75021.1| GTP-binding protein EngA [Enterococcus faecalis TX1322] gi|255963826|gb|EET96302.1| GTP-binding protein engA [Enterococcus faecalis T1] gi|256598579|gb|EEU17755.1| GTP-binding protein engA [Enterococcus faecalis ATCC 4200] gi|256683729|gb|EEU23424.1| GTP-binding protein engA [Enterococcus faecalis T3] gi|256711573|gb|EEU26611.1| GTP-binding protein engA [Enterococcus faecalis T8] gi|256949465|gb|EEU66097.1| GTP-binding protein engA [Enterococcus faecalis DS5] gi|256955632|gb|EEU72264.1| GTP-binding protein engA [Enterococcus faecalis HIP11704] gi|256987030|gb|EEU74332.1| GTP-binding protein engA [Enterococcus faecalis JH1] gi|256993224|gb|EEU80526.1| GTP-binding protein engA [Enterococcus faecalis Fly1] gi|256994785|gb|EEU82087.1| GTP-binding protein engA [Enterococcus faecalis D6] gi|257157910|gb|EEU87870.1| GTP-binding protein engA [Enterococcus faecalis ARO1/DG] gi|257164454|gb|EEU94414.1| GTP-binding protein engA [Enterococcus faecalis X98] gi|294451582|gb|EFG20041.1| ribosome-associated GTPase EngA [Enterococcus faecalis PC1.1] gi|295112973|emb|CBL31610.1| ribosome-associated GTPase EngA [Enterococcus sp. 7L76] gi|300850259|gb|EFK78009.1| ribosome-associated GTPase EngA [Enterococcus faecalis TUSoD Ef11] gi|306499803|gb|EFM69164.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0109] gi|306508421|gb|EFM77528.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX2134] gi|306510221|gb|EFM79245.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0855] gi|306512527|gb|EFM81176.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX4248] gi|310630448|gb|EFQ13731.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0102] gi|311292230|gb|EFQ70786.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0470] gi|315027277|gb|EFT39209.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX2137] gi|315029396|gb|EFT41328.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX4000] gi|315033958|gb|EFT45890.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0017] gi|315036967|gb|EFT48899.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0027] gi|315144428|gb|EFT88444.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX2141] gi|315147253|gb|EFT91269.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX4244] gi|315152495|gb|EFT96511.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0031] gi|315155773|gb|EFT99789.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0043] gi|315158060|gb|EFU02077.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0312] gi|315160456|gb|EFU04473.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0645] gi|315164003|gb|EFU08020.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX1302] gi|315169046|gb|EFU13063.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX1341] gi|315169716|gb|EFU13733.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX1342] gi|323480712|gb|ADX80151.1| small GTP-binding domain protein [Enterococcus faecalis 62] gi|327535121|gb|AEA93955.1| ribosome-associated GTPase EngA [Enterococcus faecalis OG1RF] Length = 436 Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 140/457 (30%), Positives = 235/457 (51%), Gaps = 31/457 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAIVG PNVGKST+FNR+ +++++V + PG+TRDR+Y G F+I+DT GI D Sbjct: 5 TIAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYTTGEWLGREFSIIDTGGI-DL 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + Q+ Q E+AI+EA +I+F+ + GIT D + L + N P+I+ NK+D Sbjct: 64 GDEPFMDQIKHQAEIAIDEADVIIFVASGREGITDADELVAKILYRSNKPVILAVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + YE Y+L + +S H LG ++ K F PN E E+ Sbjct: 124 PEMRNDIYEFYALGLGDPFPVSGSHGLGIGDVLDEAVKHF----PNTSEEEDEDT----- 174 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 ++ +++GRPNVGKS+LIN +LG +R++ G TRD++ Sbjct: 175 --------------------IKFSLIGRPNVGKSSLINAILGEDRVIVSDIEGTTRDAID 214 Query: 244 ISW-NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + + + + DTAGMRK ++ ES E+ +V ++M+++ + +++L+A +Q Sbjct: 215 TYFESEEGQKFLMIDTAGMRKRGKVYESTEKYSVMRAMRAIERSDIVLMVLNAEEGIREQ 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D R+ G +++ +NKWD V N ++D + + I +S T + Sbjct: 275 DKRVAGYAHEAGRGIIIVVNKWDTVKKDTNTMRDFEAEIRDEFQYLDYAPIIFVSALTKQ 334 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 L+ L + ++ RI ++ LN + NP PT + ++ Y TQ+ PP+ Sbjct: 335 RLNKLPELIETVSMNQNLRIPSALLNDVVMDAVAINPTPTDKGKRLKIFYATQVAVKPPT 394 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 F+IF + SY R+L N++R F+ G PI++ Sbjct: 395 FVIFVNEEELMHFSYARFLENQIRKAFTFEGTPIKII 431 >gi|325135934|gb|EGC58544.1| GTP-binding protein [Neisseria meningitidis M0579] Length = 536 Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 148/467 (31%), Positives = 228/467 (48%), Gaps = 30/467 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M TIA+VG PNVGKSTLFNRL + K A+V + PG+TRDR YG + + ++DT G Sbjct: 52 MKPTIALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVIDTGGF 111 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + I +M QT A++EA ++FL+D + G+TP D I LR+ P+ + NK Sbjct: 112 EPVVDSGILHEMAKQTLQAVDEADAVVFLVDGRTGLTPQDKIIADRLRQSPRPVYLAVNK 171 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + E Y L + IS H G L I + F + Sbjct: 172 GEGGNRAVLAAEFYELALGDPYVISGAHGDGVYYLIEDILETFPEP-------------- 217 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 E ++ K V AV+GRPNVGKSTL+N +LG R++ +G TRD Sbjct: 218 ------EAEEADAKHPV--------FAVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRD 263 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ I + + P I DTAG+R+ ++ E++E+ +V K+MQ+V +++LDA Sbjct: 264 SIHIDFEREGKPFTIIDTAGVRRRGKVDEAVEKFSVIKAMQAVEAANVAVLVLDAQQDIA 323 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 QD I G A+V+A+NKWD +S++ + ++ + L + + IS Sbjct: 324 DQDATIAGFALEAGRALVVAVNKWDGISEERR--EQVKRDINRKLYFLDFAKFHFISALK 381 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G+D L S+ ++ T + LQ + PP +++Y Q +P Sbjct: 382 ERGIDGLFDSIQAAYNAAMIKMPTPKITRVLQSAIERQQPPRAGLVRPKMRYAHQGGMNP 441 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 P ++ + I +SY RYL R F+L G P+R+ + S+NPY Sbjct: 442 PVIVVHGNSLHAISDSYTRYLTQTFRKAFNLQGTPLRIQYNVSENPY 488 >gi|255975864|ref|ZP_05426450.1| GTP-binding protein engA [Enterococcus faecalis T2] gi|256961938|ref|ZP_05566109.1| GTP-binding protein engA [Enterococcus faecalis Merz96] gi|257082561|ref|ZP_05576922.1| GTP-binding protein engA [Enterococcus faecalis E1Sol] gi|293383006|ref|ZP_06628924.1| ribosome-associated GTPase EngA [Enterococcus faecalis R712] gi|293389505|ref|ZP_06633962.1| ribosome-associated GTPase EngA [Enterococcus faecalis S613] gi|307278085|ref|ZP_07559169.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0860] gi|312907523|ref|ZP_07766514.1| ribosome-associated GTPase EngA [Enterococcus faecalis DAPTO 512] gi|312910141|ref|ZP_07768988.1| ribosome-associated GTPase EngA [Enterococcus faecalis DAPTO 516] gi|255968736|gb|EET99358.1| GTP-binding protein engA [Enterococcus faecalis T2] gi|256952434|gb|EEU69066.1| GTP-binding protein engA [Enterococcus faecalis Merz96] gi|256990591|gb|EEU77893.1| GTP-binding protein engA [Enterococcus faecalis E1Sol] gi|291079671|gb|EFE17035.1| ribosome-associated GTPase EngA [Enterococcus faecalis R712] gi|291081122|gb|EFE18085.1| ribosome-associated GTPase EngA [Enterococcus faecalis S613] gi|306505482|gb|EFM74668.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0860] gi|310626551|gb|EFQ09834.1| ribosome-associated GTPase EngA [Enterococcus faecalis DAPTO 512] gi|311289414|gb|EFQ67970.1| ribosome-associated GTPase EngA [Enterococcus faecalis DAPTO 516] gi|315172323|gb|EFU16340.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX1346] Length = 436 Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 140/457 (30%), Positives = 235/457 (51%), Gaps = 31/457 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAIVG PNVGKST+FNR+ +++++V + PG+TRDR+Y G F+I+DT GI D Sbjct: 5 TIAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYTTGEWLGREFSIIDTGGI-DL 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + Q+ Q E+AI+EA +I+F+ + GIT D + L + N P+I+ NK+D Sbjct: 64 GDEPFMDQIKHQAEIAIDEADVIIFVASGREGITDADELVAKILYRSNKPVILAVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + YE Y+L + +S H LG ++ K F PN E E+ Sbjct: 124 PEMRNDIYEFYALGLGDPFPVSGSHGLGIGDVLDEAVKHF----PNTSEEEDEDT----- 174 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 ++ +++GRPNVGKS+LIN +LG +R++ G TRD++ Sbjct: 175 --------------------IKFSLIGRPNVGKSSLINAILGEDRVIVSDIEGTTRDAID 214 Query: 244 ISW-NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + + + + DTAGMRK ++ ES E+ +V ++M+++ + +++L+A +Q Sbjct: 215 TYFESEEGQKFLMIDTAGMRKRGKVYESTEKYSVMRAMRAIERSDIVLMVLNAEEGIREQ 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D R+ G +++ +NKWD V N ++D + + I +S T + Sbjct: 275 DKRVAGYAHEAGRGIIIVVNKWDTVKKDTNTMRDFEAEIRDEFQYLDYAPIIFVSALTKQ 334 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 L+ L + ++ RI ++ LN + NP PT + ++ Y TQ+ PP+ Sbjct: 335 RLNKLPELIETVSMNQNLRIPSALLNDVIMDAVAINPTPTDKGKRLKIFYATQVAVKPPT 394 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 F+IF + SY R+L N++R F+ G PI++ Sbjct: 395 FVIFVNEEELMHFSYARFLENQIRKAFTFEGTPIKII 431 >gi|331090851|ref|ZP_08339697.1| GTP-binding protein engA [Lachnospiraceae bacterium 2_1_46FAA] gi|330399710|gb|EGG79372.1| GTP-binding protein engA [Lachnospiraceae bacterium 2_1_46FAA] Length = 442 Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 141/464 (30%), Positives = 239/464 (51%), Gaps = 33/464 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFN L + +++V + PG+TRDR+Y + F ++DT GI Sbjct: 6 VAIVGRPNVGKSTLFNALAGEMISIVKDTPGVTRDRIYAEVNWLDKEFTLIDTGGIEPDS 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 I QM +Q ++AI+ A +I+FL D K G+ D + LR+ P+++V NK+D+ Sbjct: 66 KDIILSQMREQAQIAIDTADVIIFLTDVKQGLVDSDSKVADMLRRSGKPVVLVVNKVDSF 125 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + YE Y+L + ISA LG ++ + K F P E E+++ Sbjct: 126 QKFMADVYEFYNLGIGDPFPISASSRLGIGDMLDEVVKHF----PETTAEEAEDDRP--- 178 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 RIA+VG+PNVGKS++IN+L G NR++ +G TRD++ Sbjct: 179 ---------------------RIAIVGKPNVGKSSIINKLQGDNRVIVSDIAGTTRDAID 217 Query: 244 --ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 I++N K + DTAG+R+ ++I E LE+ ++ +++ +V + ++++DAT + Sbjct: 218 TPITYNGKEYV--FIDTAGLRRKNKIKEELERYSIIRTVTAVERADVVLIVIDATEGVTE 275 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTG 361 QD +I G +++ +NKWD + + + + + L + I +S TG Sbjct: 276 QDAKIAGIAHERGKGIIIVVNKWDAIEKHDKTMYEYEKQVRQVLSYMPYAEIMYVSAHTG 335 Query: 362 EGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 + L+ L + + + R+ T LN + + PP+ + +L YITQ+ PP Sbjct: 336 QRLNKLYEKIDMVIENQTLRVATGVLNEIMMEAVAMQQPPSDKGKRLKLYYITQVSVKPP 395 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 +F+IF + SY RYL N++R F G ++ + K+ Sbjct: 396 TFVIFVNDKELMHFSYTRYLENKIREAFGFKGTSLKFFIRERKD 439 >gi|299821633|ref|ZP_07053521.1| ribosome-associated GTPase EngA [Listeria grayi DSM 20601] gi|299817298|gb|EFI84534.1| ribosome-associated GTPase EngA [Listeria grayi DSM 20601] Length = 447 Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 145/463 (31%), Positives = 243/463 (52%), Gaps = 33/463 (7%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 +AIVG PNVGKST+FNR+V +++++V + PG+TRDR+Y A G FNI+DT GI D Sbjct: 16 VVAIVGRPNVGKSTIFNRIVGERISIVEDVPGVTRDRIYNSAEWLGKDFNIIDTGGI-DL 74 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + Q+ Q E+AI+EA +I+F+ + + G+T D + L + P+++ NK+D Sbjct: 75 SDEPFLDQIRAQAEIAIDEADVIIFITNGREGVTDADEQVAKILYRSQKPVVLAINKVDN 134 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + Y+ YSL F E IS H LG +L + K F + + I Sbjct: 135 PEMRTQIYDFYSLGFGEPFPISGSHGLGLGDLLDEVRKHFPAEDEVEEDDDI-------- 186 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 ++ +++GRPNVGKS+++N LLG R++ +G TRD++ Sbjct: 187 --------------------IKFSLIGRPNVGKSSILNALLGEERVIVSDIAGTTRDAID 226 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 S+ + + + DTAGMRK ++ E E+ +V ++M+++ + +V+L+A +QD Sbjct: 227 TSYIYDDQEYIMIDTAGMRKRGKVYEGTEKYSVLRAMRAIERSDVVLVVLNAEEGIREQD 286 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 +I + G A+V+ +NKWD + ++ T + + I +S +T + Sbjct: 287 KKIAGYAHDAGRAIVIVVNKWDAIEKDEKTMKAFETDIREQFLFLSYAPIVYVSAKTKQR 346 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLK--YITQIQSSPP 421 L +L + ++++ R+ +S LN + NP P ++ RLK Y TQ+ PP Sbjct: 347 LTNLFPIINQVSENHSLRVQSSMLNDIISDAVAMNPSP--MDKGKRLKIFYTTQVAVKPP 404 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 F++F P + SY+R+L NR+R FS G PIR+ + K Sbjct: 405 VFVVFVNEPELMHFSYERFLENRIRDTFSFEGTPIRVIARKRK 447 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 49/189 (25%), Positives = 88/189 (46%), Gaps = 25/189 (13%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAG-- 59 I +++G PNVGKS++ N L+ ++ +V + G TRD + I + + ++DTAG Sbjct: 186 IIKFSLIGRPNVGKSSILNALLGEERVIVSDIAGTTRDAIDTSYIYDDQEYIMIDTAGMR 245 Query: 60 ----IADG-KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPI 114 + +G + S+ + M AI + ++L +++++ GI D I + I Sbjct: 246 KRGKVYEGTEKYSVLRAMR-----AIERSDVVLVVLNAEEGIREQDKKIAGYAHDAGRAI 300 Query: 115 IIVSNKMDTRIAQRNFYEIYSLDFKE---------IVEISAEHDLGTSELHSVIFKIFKQ 165 +IV NK D + + D +E IV +SA+ T + + +F I Q Sbjct: 301 VIVVNKWDAIEKDEKTMKAFETDIREQFLFLSYAPIVYVSAK----TKQRLTNLFPIINQ 356 Query: 166 KYPNHPLEM 174 NH L + Sbjct: 357 VSENHSLRV 365 >gi|254670450|emb|CBA06089.1| putative GTP-binding protein [Neisseria meningitidis alpha153] Length = 536 Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 147/467 (31%), Positives = 231/467 (49%), Gaps = 30/467 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M TIA+VG PNVGKSTLFNRL + K A+V + PG+TRDR YG + + ++DT G Sbjct: 52 MKPTIALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVIDTGGF 111 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + I +M QT A++EA ++FL+D + G+TP D I LR+ P+ + NK Sbjct: 112 EPVVDSGILHEMAKQTLQAVDEADAVVFLVDGRTGLTPQDKIIADRLRQSPRPVYLAVNK 171 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + E Y L + IS H G ++ + ++ N P +E Sbjct: 172 GEGGNRAVLAAEFYELALGDPYVISGAHGDG-------VYYLIEEILENFPEPEVEE--- 221 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 ++ K V AV+GRPNVGKSTL+N +LG R++ +G TRD Sbjct: 222 ----------ADAKHPV--------FAVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRD 263 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ I + + P I DTAG+R+ ++ E++E+ +V K+MQ+V +++LDA Sbjct: 264 SIHIDFEREGKPFTIIDTAGVRRRGKVDEAVEKFSVIKAMQAVEAANVAVLVLDAQQDIA 323 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 QD I G A+V+A+NKWD +S++ + ++ + L + + IS Sbjct: 324 DQDATIAGFALEAGRALVVAVNKWDGISEERR--EQVKRDINRKLYFLDFAKFHFISALK 381 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G+D L S+ ++ T + LQ + PP +++Y Q +P Sbjct: 382 ERGIDGLFDSIQAAYNAAMIKMPTPKITRVLQSAIERQQPPRAGLVRPKMRYAHQGGMNP 441 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 P ++ + I +SY RYL R F+L G P+R+ + S+NPY Sbjct: 442 PVIVVHGNSLHAISDSYTRYLTQTFRKAFNLQGTPLRIQYNVSENPY 488 >gi|325144121|gb|EGC66428.1| GTP-binding protein [Neisseria meningitidis M01-240013] Length = 536 Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 147/467 (31%), Positives = 231/467 (49%), Gaps = 30/467 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M TIA+VG PNVGKSTLFNRL + K A+V + PG+TRDR YG + + ++DT G Sbjct: 52 MKPTIALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVIDTGGF 111 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + I +M QT A++EA ++FL+D + G+TP D I LR+ P+ + NK Sbjct: 112 EPVVDSGILHEMAKQTLQAVDEADAVVFLVDGRTGLTPQDKIIADRLRQSPRPVYLAVNK 171 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + E Y L + IS H G ++ + ++ N P +E Sbjct: 172 GEGGNRAVLAAEFYELALGDPYVISGAHGDG-------VYYLIEEILENFPEPEVEE--- 221 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 ++ K V AV+GRPNVGKSTL+N +LG R++ +G TRD Sbjct: 222 ----------ADAKHPV--------FAVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRD 263 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ I + + P I DTAG+R+ ++ E++E+ +V K+MQ+V +++LDA Sbjct: 264 SIHIDFEREGKPFTIIDTAGVRRRGKVDEAVEKFSVIKAMQAVEAANVAVLVLDAQQDIA 323 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 QD I G A+V+A+NKWD +S++ + ++ + L + + IS Sbjct: 324 DQDATIAGFALEAGRALVVAVNKWDGISEERR--EQVKRDINRKLYFLDFAKFHFISALK 381 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G+D L S+ ++ T + LQ + PP +++Y Q +P Sbjct: 382 ERGIDGLFDSIQAAYNAAMIKMPTPKITRVLQSAIERQQPPRAGLVRPKMRYAHQGGMNP 441 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 P ++ + I +SY RYL R F+L G P+R+ + S+NPY Sbjct: 442 PVIVVHGNSLHAISDSYTRYLTQTFRKAFNLQGTPLRIQYNVSENPY 488 >gi|121634628|ref|YP_974873.1| GTP-binding protein EngA [Neisseria meningitidis FAM18] gi|166225830|sp|A1KT93|DER_NEIMF RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|120866334|emb|CAM10076.1| putative GTP-binding protein [Neisseria meningitidis FAM18] gi|261392799|emb|CAX50375.1| putative GTP-binding protein EngA [Neisseria meningitidis 8013] gi|325142105|gb|EGC64531.1| GTP-binding protein [Neisseria meningitidis 961-5945] gi|325198052|gb|ADY93508.1| GTP-binding protein [Neisseria meningitidis G2136] gi|325203920|gb|ADY99373.1| GTP-binding protein [Neisseria meningitidis M01-240355] Length = 485 Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 148/467 (31%), Positives = 228/467 (48%), Gaps = 30/467 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M TIA+VG PNVGKSTLFNRL + K A+V + PG+TRDR YG + + ++DT G Sbjct: 1 MKPTIALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVIDTGGF 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + I +M QT A++EA ++FL+D + G+TP D I LR+ P+ + NK Sbjct: 61 EPVVDSGILHEMAKQTLQAVDEADAVVFLVDGRTGLTPQDKIIADRLRQSPRPVYLAVNK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + E Y L + IS H G L I + F + Sbjct: 121 GEGGNRAVLAAEFYELALGDPYVISGAHGDGVYYLIEDILETFPEP-------------- 166 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 E ++ K V AV+GRPNVGKSTL+N +LG R++ +G TRD Sbjct: 167 ------EAEEADAKHPV--------FAVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRD 212 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ I + + P I DTAG+R+ ++ E++E+ +V K+MQ+V +++LDA Sbjct: 213 SIHIDFEREGKPFTIIDTAGVRRRGKVDEAVEKFSVIKAMQAVEAANVAVLVLDAQQDIA 272 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 QD I G A+V+A+NKWD +S++ + ++ + L + + IS Sbjct: 273 DQDATIAGFALEAGRALVVAVNKWDGISEERR--EQVKRDINRKLYFLDFAKFHFISALK 330 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G+D L S+ ++ T + LQ + PP +++Y Q +P Sbjct: 331 ERGIDGLFDSIQAAYNAAMIKMPTPKITRVLQSAIERQQPPRAGLVRPKMRYAHQGGMNP 390 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 P ++ + I +SY RYL R F+L G P+R+ + S+NPY Sbjct: 391 PVIVVHGNSLHAISDSYTRYLTQTFRKAFNLQGTPLRIQYNVSENPY 437 >gi|56708364|ref|YP_170260.1| GTP-binding protein EngA [Francisella tularensis subsp. tularensis SCHU S4] gi|110670834|ref|YP_667391.1| GTP-binding protein EngA [Francisella tularensis subsp. tularensis FSC198] gi|224457492|ref|ZP_03665965.1| GTP-binding protein EngA [Francisella tularensis subsp. tularensis MA00-2987] gi|254370986|ref|ZP_04986989.1| hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|254875187|ref|ZP_05247897.1| GTP-binding protein engA [Francisella tularensis subsp. tularensis MA00-2987] gi|81820765|sp|Q5NFD2|DER_FRATT RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|123169321|sp|Q14GT5|DER_FRAT1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|56604856|emb|CAG45939.1| GTP-binding protein [Francisella tularensis subsp. tularensis SCHU S4] gi|110321167|emb|CAL09322.1| GTP-binding protein [Francisella tularensis subsp. tularensis FSC198] gi|151569227|gb|EDN34881.1| hypothetical protein FTBG_01608 [Francisella tularensis subsp. tularensis FSC033] gi|254841186|gb|EET19622.1| GTP-binding protein engA [Francisella tularensis subsp. tularensis MA00-2987] gi|282159981|gb|ADA79372.1| GTP-binding protein EngA [Francisella tularensis subsp. tularensis NE061598] Length = 465 Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 156/472 (33%), Positives = 248/472 (52%), Gaps = 25/472 (5%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M + +AIVG NVGKSTLFN L A+V + G+TRDR YGQA + + + +VDT GI Sbjct: 1 MSFLVAIVGRANVGKSTLFNVLTNSYDALVFDFEGVTRDRQYGQAKYDDLDYLVVDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 +D K+ + M Q+++AI+EA+L+ F++D ++G+T D + S LR+K+ +++V NK Sbjct: 61 SD-KDVGFDEFMAKQSQIAIDEANLVFFVVDGRSGLTTGDEYVASLLRQKDKKVVVVVNK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D + E YS F ++ ISA H T +L F +K N + + Sbjct: 120 VDGTDEEAAMAEFYSFGFDKVFAISAAHRRNTQKL----VDKFLKKTLNEYYQDYTQTQE 175 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 ++E + I +++GRPNVGKSTL NR+LG +R++ G T D Sbjct: 176 HKEQQRHGI---------------HFSLIGRPNVGKSTLTNRMLGEDRVVVFDMPGTTID 220 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 SVSI + I DTAG+RK ++ ++LE+ +V K++Q+++ + ++DA Sbjct: 221 SVSIPFERHGQKYTIVDTAGVRKRGKVKQTLEKFSVIKTLQAIQDSNVVVAVVDARQGIS 280 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVS--DKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 QDL ++ G A+VLA+NKWD ++ D++ + QDL+ K L DI+ IS Sbjct: 281 DQDLSLIHFAIKNGRALVLAVNKWDGMTEEDRIQVKQDLKRKLF-FLQDYVDIHF--ISA 337 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 G + + S+ +ITT+ +Q + PP + +LKY Sbjct: 338 LHGTNVGHVFESIDTAYACASKKITTADATRLMQLAVEAHSPPMVGKFRIKLKYAHVGGH 397 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I +++P SYKRYL N R G PI F+ S+NP+ + Sbjct: 398 NPPVIVIHGNQVSRLPNSYKRYLENFFREALDFRGTPIVFEFKQSENPFADR 449 >gi|320527698|ref|ZP_08028870.1| ribosome-associated GTPase EngA [Solobacterium moorei F0204] gi|320131941|gb|EFW24499.1| ribosome-associated GTPase EngA [Solobacterium moorei F0204] Length = 437 Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 135/454 (29%), Positives = 231/454 (50%), Gaps = 30/454 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKST+FNR+ ++++V + PG+TRDR+Y G F ++DT GI Sbjct: 6 IAIVGRPNVGKSTIFNRIAGSRVSIVEDFPGVTRDRIYTTGEWTGKKFQLIDTGGIQLAD 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +++ Q ++A+NEA +ILF+++ K G+T D I L+K+ P+++ N +D Sbjct: 66 Q-PYQEEIRAQVQIAMNEADVILFVVNGKMGMTDDDSYIAGILQKQTKPVVLAVNMIDDS 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 N YE Y+L + + +S H +G ++ ++ M E +K ++ + Sbjct: 125 TRMMNIYEFYNLGLGDPIAVSGVHGIGIGDVLDECLRL-----------MPEEDKEDKHT 173 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 + IAV+G PNVGKS+L+N +L R + + G TRD+V Sbjct: 174 G------------------IHIAVIGEPNVGKSSLVNAILKEKRSIVSNVQGTTRDAVDT 215 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + ++ P I DTAG+RK ++ ES+E+ +V ++M ++ C+ + ++D +QD Sbjct: 216 PFVYEGKPYVIVDTAGIRKRGKVYESVEKYSVLRAMTAIERCDVALFVIDGEAGIREQDK 275 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 + G +V+ +NKWD V + + + I +S T + + Sbjct: 276 HVAGYACEAGKPIVIVVNKWDAVEKDDKTMNAFIERIRIEFAYLSYAPIVFVSALTHQRV 335 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 D ++ V ++ + RI T+ LN + TQ+ P P + R+ Y TQ+ PP+F+ Sbjct: 336 DTIIPVVDQVYENSCRRIATNILNEVITDTQITTPAPARNGKRFRVYYGTQVSIQPPTFV 395 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 + C P + +Y+R+L N LR F G PIR+ Sbjct: 396 LSCNDPRLMHFTYERFLENSLRQAFDFIGTPIRI 429 >gi|161869787|ref|YP_001598955.1| GTP-binding protein EngA [Neisseria meningitidis 053442] gi|161595340|gb|ABX73000.1| GTP-binding protein engA [Neisseria meningitidis 053442] Length = 536 Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 148/467 (31%), Positives = 228/467 (48%), Gaps = 30/467 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M TIA+VG PNVGKSTLFNRL + K A+V + PG+TRDR YG + + ++DT G Sbjct: 52 MKPTIALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVIDTGGF 111 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + I +M QT A++EA ++FL+D + G+TP D I LR+ P+ + NK Sbjct: 112 EPVVDSGILHEMAKQTLQAVDEADAVVFLVDGRTGLTPQDKIIADRLRQSPRPVYLAVNK 171 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + E Y L + IS H G L I + F + Sbjct: 172 GEGGNRAVLAAEFYELALGDPYVISGAHGDGVYYLIEDILETFPEP-------------- 217 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 E ++ K V AV+GRPNVGKSTL+N +LG R++ +G TRD Sbjct: 218 ------EAEEADAKHPV--------FAVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRD 263 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ I + + P I DTAG+R+ ++ E++E+ +V K+MQ+V +++LDA Sbjct: 264 SIHIDFEREGKPFTIIDTAGVRRRGKVDEAVEKFSVIKAMQAVEAANVAVLVLDAQQDIA 323 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 QD I G A+V+A+NKWD +S++ + ++ + L + + IS Sbjct: 324 DQDATIAGFALEAGRALVVAVNKWDGISEERR--EQVKRDINRKLYFLDFAKFHFISALK 381 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G+D L S+ ++ T + LQ + PP +++Y Q +P Sbjct: 382 ERGIDGLFDSIQAAYNAAMIKMPTPKITRVLQSAIERQQPPRAGLVRPKMRYAHQGGMNP 441 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 P ++ + I +SY RYL R F+L G P+R+ + S+NPY Sbjct: 442 PVIVVHGNSLHAISDSYTRYLTQTFRKAFNLQGTPLRIQYNVSENPY 488 >gi|257089874|ref|ZP_05584235.1| GTP-binding protein engA [Enterococcus faecalis CH188] gi|312903296|ref|ZP_07762476.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0635] gi|256998686|gb|EEU85206.1| GTP-binding protein engA [Enterococcus faecalis CH188] gi|310633172|gb|EFQ16455.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0635] gi|315577718|gb|EFU89909.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0630] Length = 436 Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 140/457 (30%), Positives = 235/457 (51%), Gaps = 31/457 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAIVG PNVGKST+FNR+ +++++V + PG+TRDR+Y G F+I+DT GI D Sbjct: 5 TIAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYTTGEWLGREFSIIDTGGI-DL 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + Q+ Q E+AI+EA +I+F+ + GIT D + L + N P+I+ NK+D Sbjct: 64 GDEPFMDQIKHQAEIAIDEADVIIFVASGREGITDADELVAKILYRSNKPVILAVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + YE Y+L + +S H LG ++ K F PN E E+ Sbjct: 124 PEMRNDIYEFYALGLGDPFPVSGSHGLGIGDVLDEAVKHF----PNTSEEEDEDT----- 174 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 ++ +++GRPNVGKS+LIN +LG +R++ G TRD++ Sbjct: 175 --------------------IKFSLIGRPNVGKSSLINAILGEDRVIVSDIEGTTRDAID 214 Query: 244 ISW-NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + + + + DTAGMRK ++ ES E+ +V ++M+++ + +++L+A +Q Sbjct: 215 TYFESEEGQKFLMIDTAGMRKRGKVYESTEKYSVMRAMRAIERSDIVLMVLNAEEGIREQ 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D R+ G +++ +NKWD V N ++D + + I +S T + Sbjct: 275 DKRVAGYAHEAGRGIIIVVNKWDTVKKDTNTMRDFEAEIRDEFQYLDYAPIIFVSALTKQ 334 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 L+ L + ++ RI ++ LN + NP PT + ++ Y TQ+ PP+ Sbjct: 335 RLNKLPELIETVSMNQNLRIPSALLNDVVMDAVAINPTPTDKGKRLKIFYATQVAVKPPT 394 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 F+IF + SY R+L N++R F+ G PI++ Sbjct: 395 FVIFVNEEELMHFSYARFLENQIRKAFTFEGTPIKII 431 >gi|325130014|gb|EGC52808.1| GTP-binding protein [Neisseria meningitidis OX99.30304] Length = 485 Score = 238 bits (606), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 146/467 (31%), Positives = 231/467 (49%), Gaps = 30/467 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M TIA+VG PNVGKSTLFNRL + K A+V + PG+TRDR YG + + ++DT G Sbjct: 1 MKPTIALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVIDTGGF 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + I +M QT A++EA ++FL+D + G+TP D I LR+ P+ + NK Sbjct: 61 EPVVDSGILHEMAKQTLQAVDEADAVVFLVDGRTGLTPQDKIIADRLRQSPRPVYLAVNK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + E Y L + IS H G ++ + ++ N P Sbjct: 121 GEGGNRAVLAAEFYELALGDPYVISGAHGDG-------VYYLIEEILENFP--------- 164 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 E ++ + P+ AV+GRPNVGKSTL+N +LG R++ +G TRD Sbjct: 165 -----------EPEAEEADAKHPV-FAVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRD 212 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ I + + P I DTAG+R+ ++ E++E+ +V K+MQ+V +++LDA Sbjct: 213 SIHIDFEREGKPFTIIDTAGVRRRGKVDEAVEKFSVIKAMQAVEAANVAVLVLDAQQDIA 272 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 QD I G A+V+A+NKWD +S++ + ++ + L + + IS Sbjct: 273 DQDATIAGFALEAGRALVVAVNKWDGISEERR--EQVKRDINRKLYFLDFAKFHFISALK 330 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G+D L S+ ++ T + LQ + PP +++Y Q +P Sbjct: 331 ERGIDGLFESIQAAYNAAMIKMPTPKITRVLQSAIERQQPPRAGLVRPKMRYAHQGGMNP 390 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 P ++ + I +SY RYL R F+L G P+R+ + S+NPY Sbjct: 391 PVIVVHGNSLHAISDSYTRYLTQTFRKAFNLQGTPLRIQYNVSENPY 437 >gi|296140071|ref|YP_003647314.1| ribosome-associated GTPase EngA [Tsukamurella paurometabola DSM 20162] gi|296028205|gb|ADG78975.1| ribosome-associated GTPase EngA [Tsukamurella paurometabola DSM 20162] Length = 482 Score = 238 bits (606), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 154/459 (33%), Positives = 236/459 (51%), Gaps = 40/459 (8%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI--- 60 T+AIVG PNVGKSTL NR++ ++ AVV + PG+TRDR+ +A G F + DT G Sbjct: 49 TVAIVGRPNVGKSTLVNRILGRREAVVEDIPGVTRDRISYEADWAGRRFLVQDTGGWEPD 108 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 A G S+A Q E+A+ A ++ ++D+ G T D A+ LR+ P+I+ +NK Sbjct: 109 AKGMQQSVAAQ----AEVAMRTADAVVVVVDATVGATSTDEAVARVLRRSKTPVILAANK 164 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D + + ++SL E ISA H GT +L VI +K P Sbjct: 165 VDDQRVESEAAALWSLGLGEPYTISAAHGRGTGDLLDVIL----EKLP------------ 208 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 E+P+E G P R+A+VG+PNVGKS+L+N+L G NR + + +G T D Sbjct: 209 --ETPREGTGGFG---------PRRVALVGKPNVGKSSLLNKLTGENRSVVDNVAGTTVD 257 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 V + DTAG+RK E ++ ++ E IVL+DA+ P Sbjct: 258 PVDSLVELGGKTWKFIDTAGLRKKVNQASGHEFYASLRTKGAIEAAEVAIVLIDASQPIT 317 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMV-SDKLNLLQDLRTKAIKNLPQIGDIYINTISGR 359 +QDLR++ V +G A+V+A NKWD+V D+ L+ + + LP + IS + Sbjct: 318 EQDLRVLSMVVESGRALVIAYNKWDLVDEDRRYQLEKEIDRELVQLPWAQRV---NISAQ 374 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 TG L L+ ++ + W RI T LN+WL+ PPP + ++ + TQ + Sbjct: 375 TGRALQKLVPAIDTALESWDKRIPTGRLNNWLRDVMAATPPPLRGGKLPKVLFATQAGTR 434 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 PP+F++F T + Y+R+L +LR F G P+R+ Sbjct: 435 PPTFVLFTT--GFLEAGYRRFLERKLREEFGFEGSPVRV 471 >gi|154483558|ref|ZP_02026006.1| hypothetical protein EUBVEN_01262 [Eubacterium ventriosum ATCC 27560] gi|149735468|gb|EDM51354.1| hypothetical protein EUBVEN_01262 [Eubacterium ventriosum ATCC 27560] Length = 441 Score = 238 bits (606), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 141/461 (30%), Positives = 233/461 (50%), Gaps = 29/461 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFN L KK+++V + PG+TRDR++ F ++DT GI Sbjct: 6 VAIVGRPNVGKSTLFNALAGKKISIVKDTPGVTRDRIHADIDWLDHKFTMIDTGGIEPDS 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 N I QM +Q ++AI+ A +I+F+ D K G+ D + LR+ + P+I+V NK+D Sbjct: 66 NDIILSQMREQAQIAIDTADVIIFMTDVKQGLVDSDAKVADMLRRSHKPVILVVNKVDNF 125 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + YE Y+L + V ISA G ++ + F + LE E+++ Sbjct: 126 NKMMADVYEFYNLGIGDPVPISASQRSGLGDMLDKVVSYF----ADLNLEQEEDDRP--- 178 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 RIA+VG+PNVGKS++IN++ G +R++ + +G TRD++ Sbjct: 179 ---------------------RIAIVGKPNVGKSSIINKITGESRVIVSNIAGTTRDAID 217 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 W DTAG+R+ S++ E +E+ ++ +++ +V + I+++DA +QD Sbjct: 218 TDVKWNGKDYVFIDTAGLRRKSKVKEEIEKYSIIRTVTAVERADVVIIVIDAVEGVTEQD 277 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 +I G +++A+NKWD + + + K L + I IS +TG+ Sbjct: 278 AKIAGIAHENGKGIIIAVNKWDAIEKNDKTVYEYTNKVRDILSFMPYAEIMFISAKTGQR 337 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 L L + + RI T +N + + PP+ + +L YITQ+ PP+F Sbjct: 338 LPKLFDMIDFVIANHAMRIETGVVNEIMAEAVALQQPPSDKGKRLKLYYITQVSVKPPTF 397 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 +IF + SY RY+ N++R F G P+R + K Sbjct: 398 VIFVNDKQLMHFSYTRYIENKIREAFGFKGTPLRFIIRERK 438 >gi|332703981|ref|ZP_08424069.1| GTP-binding protein engA [Desulfovibrio africanus str. Walvis Bay] gi|332554130|gb|EGJ51174.1| GTP-binding protein engA [Desulfovibrio africanus str. Walvis Bay] Length = 443 Score = 238 bits (606), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 142/468 (30%), Positives = 243/468 (51%), Gaps = 32/468 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M T+AI+G PNVGKSTLFNRL++++ A+ + PG+TRDR+Y + + G VDT G+ Sbjct: 1 MPATVAIIGRPNVGKSTLFNRLLRREAAITHDRPGVTRDRIYAETDLGGRKVAFVDTGGL 60 Query: 61 ADGKNCS-IAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 + I + Q A+ E+H IL ++D + G+T D + +F+R N P+++ N Sbjct: 61 EMEEQVEDIQAAIFAQAREAVKESHGILLVMDGREGLTALDERVAAFIRTSNKPVLLAVN 120 Query: 120 KMD-TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 K+D + A E + L F ++ +SA H G + L I P Sbjct: 121 KIDGSENADLMLAEFHGLGFP-LLAVSASHGHGITTLREQIADFLLADVPE--------- 170 Query: 179 KRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 +E++T+E + LRIA +G+PN GKS+L+N L G +R++ +G T Sbjct: 171 -------EEDLTAE---------QGLRIAFLGKPNAGKSSLVNSLTGSDRVIVSPVAGTT 214 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RDSV +++ + DTAG+RK ++I ++LEQ +V +++++ + + T+++LDA Sbjct: 215 RDSVDVTFEVEGKRYTFVDTAGVRKRTKIEDNLEQFSVLRALKASKKAQITVLVLDAQAG 274 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMV-SDKLNLLQDLRTKAIKNLPQIGDIYINTIS 357 QD +++ + + +NK D+V D+ + R K L + S Sbjct: 275 MTTQDKKLLSFLEKEKTPFIAVINKMDLVPRDERKV---AREHYKKELSIASYAPVTFTS 331 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 TG G+ +L+ + + + RI T LN L+ ++ PP + R + Y+TQ++ Sbjct: 332 AMTGVGVAELLPMAERLLEECRIRIGTGALNRALRAALGKHQPPVVKRRRAKFYYLTQVE 391 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 + PP+F+ F P I SY RYL N LR ++ P+R+ ++ S + Sbjct: 392 TEPPTFVFFVNDPELIKPSYARYLENSLRKLLGITMAPVRVFYKPSHD 439 >gi|315924473|ref|ZP_07920695.1| ribosome-associated GTPase EngA [Pseudoramibacter alactolyticus ATCC 23263] gi|315622352|gb|EFV02311.1| ribosome-associated GTPase EngA [Pseudoramibacter alactolyticus ATCC 23263] Length = 440 Score = 238 bits (606), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 146/464 (31%), Positives = 240/464 (51%), Gaps = 35/464 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTLFN+LV +++A+V N PG+TRDR+ A F ++DT GI Sbjct: 5 VAVVGKPNVGKSTLFNKLVGERIAIVENTPGVTRDRIIADAEWQNHRFTLIDTGGIELKT 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I QM Q E+AI A LIL L D + G+T D + LRK++ +I+V NK+D+ Sbjct: 65 GNTIMHQMRVQAEIAIETADLILLLCDGREGMTAADEDVADMLRKQHKKVIVVVNKLDSV 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + YE Y+L + + ISAE LG +L L+ I +N Sbjct: 125 KLEERLYEFYNLGLGDPLPISAEQGLGLGDL----------------LDAIVDN------ 162 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 T+ + L IAVVG+PN GKSTL+N+L+G NR++ G TRD++ Sbjct: 163 -----TAALYQLADDEDGSLHIAVVGKPNAGKSTLVNQLIGENRMIVSDIPGTTRDAIDS 217 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 DTAG+R+ S+I + +E+ ++ +++ +V + +++++A +QD Sbjct: 218 KIERGGVEYTFIDTAGLRRKSKIADEVERYSIIRAIAAVDRADVVLMMVNAQTGVTEQDS 277 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKN----LPQIGDIYINTISGRT 360 +I N ++ +NKWD++ +Q + T I+N +P ++I+ +G+ Sbjct: 278 KIAGIAHNRFIPTIIVVNKWDLIEKDTKTMQKM-TGDIRNSLAFMPYAPMLFISAKTGKR 336 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 E + D + V+ + + R+ T+ LN L PP+ R +L Y +Q+ +P Sbjct: 337 AEKIYDKIQYVVTQS---RKRVLTAKLNEALIDFVSLKEPPSKNGRRLKLFYGSQVDIAP 393 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 P+F+IF + SYKRYL N++ F G P R+ ++ + Sbjct: 394 PTFVIFVNDDTLMHFSYKRYLENKINETFDFDGTPFRLLIRNRE 437 >gi|313678873|ref|YP_004056613.1| ribosome-associated GTPase EngA [Mycoplasma bovis PG45] gi|312950564|gb|ADR25159.1| ribosome-associated GTPase EngA [Mycoplasma bovis PG45] Length = 436 Score = 238 bits (606), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 148/465 (31%), Positives = 248/465 (53%), Gaps = 35/465 (7%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 IAI+G PNVGKSTLFNRLV K+ ++ + PG+TRDRLY + NG N++DT GI Sbjct: 5 VIAIIGKPNVGKSTLFNRLVGKRSSITFDRPGVTRDRLYESFMWNGKEINVIDTGGIQIE 64 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 K Q+ Q ++AI EA++++F++D ++ IT D I S L+K PII+V+NK+D Sbjct: 65 KK-DFQDQILIQAKIAIQEANVVIFIVDGQSSITSDDKMIYSMLQKSGKPIIVVANKLDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 I++ + Y YSL + ISA H G ++ KY N + Sbjct: 124 -ISKFD-YGWYSLGADHVFRISALHGNGIGDVLDQCL-----KYLNFDTD---------- 166 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 N+S +++++G+PN GKS+L+N + NR + +G TRDSV Sbjct: 167 ---------------NVSPYFKLSIIGQPNSGKSSLLNAITHENRSIVSDIAGTTRDSVK 211 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + H IEI DTAG+ K S+I +++E +K++M S+ + +IVL+D+T D Sbjct: 212 SVVELRGHKIEIIDTAGITKKSKIDDTVEHLALKRAMSSLDESDLSIVLIDSTRELAHFD 271 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 RI+ +++ +NKWD+++ + + + R K + + + IS +TG Sbjct: 272 ARIIGYALENNKPIIICVNKWDLINKTQDTMNEYRKKLKNRFHFVPWVPVEFISAKTGAR 331 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNP-PPTIFNRYNRLKYITQIQSSPPS 422 +D L+ VL++ + + I S L + ++++QL P PP R N + + + ++ P+ Sbjct: 332 IDKLIDIVLKVKENLEREIKPSVLTNLIRESQLIQPAPPYNGGRLN-IYFARKTENKIPT 390 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 F+ F + SY+R+L ++R N +G PI + F++ N + Sbjct: 391 FIFFVNNKKFVHFSYQRFLEKQIRQNIEYTGCPINIIFKNKSNEF 435 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 66/127 (51%), Gaps = 12/127 (9%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + ++I+G PN GKS+L N + + ++V + G TRD + + G I+DTAGI Sbjct: 172 FKLSIIGQPNSGKSSLLNAITHENRSIVSDIAGTTRDSVKSVVELRGHKIEIIDTAGITK 231 Query: 63 G-------KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPII 115 ++ ++ + M+ +++E+ L + LIDS + +D I + + N PII Sbjct: 232 KSKIDDTVEHLALKRAMS-----SLDESDLSIVLIDSTRELAHFDARIIGYALENNKPII 286 Query: 116 IVSNKMD 122 I NK D Sbjct: 287 ICVNKWD 293 >gi|320093654|ref|ZP_08025534.1| ribosome-associated GTPase EngA [Actinomyces sp. oral taxon 178 str. F0338] gi|319979402|gb|EFW10884.1| ribosome-associated GTPase EngA [Actinomyces sp. oral taxon 178 str. F0338] Length = 503 Score = 238 bits (606), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 141/456 (30%), Positives = 237/456 (51%), Gaps = 32/456 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI-ADG 63 +A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ A G F +VDT G D Sbjct: 70 LAVVGRPNVGKSTLVNRVLGRREAVVQDTPGVTRDRVSYPAEWAGRDFTLVDTGGWEVDV 129 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 K + + +Q E A++ A ++ ++D+ G+T D I + LR K P+++ +NK+D+ Sbjct: 130 KGLD--RSVAEQAETAVDLADAVVLVLDATVGVTASDERIVTMLRAKRKPVVLAANKVDS 187 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + + ++ L E +SA H G +L + + Sbjct: 188 AVQEADAAYLWGLGMGEPHPVSALHGRGVGDLLDAVAAVL-------------------- 227 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 P E+ + S P R+A+VGRPNVGKS+L+N L G +R++ +G TRD V Sbjct: 228 -PDESAHAPAPPS----GGPRRVALVGRPNVGKSSLLNALAGSSRVVVNELAGTTRDPVD 282 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 P DTAG+R+ + T + ++ ++ E +VL+D + P +QD Sbjct: 283 ELIELDGRPWWFVDTAGIRRKAHRTTGADYYASIRTQAAIEKAEVALVLIDGSEPLTEQD 342 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 +R+V V + G A+V+ NKWD+V ++ + LR + ++L QI ++ RTG Sbjct: 343 VRVVQQVIDAGRALVVVTNKWDLVDEERQ--RALRGELERDLVQIQWAPRINLAARTGWH 400 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 + ++ ++ + W+TRI T +LN++L + +P P + R+ + TQ S PP F Sbjct: 401 TNRIVRALDTALEGWQTRIPTGHLNAFLGQLVAAHPHPLRGGKQPRILFGTQASSKPPRF 460 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 ++F T + Y+R++ RLR F +G PIR+ Sbjct: 461 VLFTT--GFLDPGYRRFIERRLREAFGFAGTPIRIS 494 >gi|149369730|ref|ZP_01889582.1| GTP-binding protein EngA [unidentified eubacterium SCB49] gi|149357157|gb|EDM45712.1| GTP-binding protein EngA [unidentified eubacterium SCB49] Length = 433 Score = 238 bits (606), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 139/456 (30%), Positives = 233/456 (51%), Gaps = 37/456 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST FNR+++++ A+V G+TRDR YG++ NG F+++DT G G Sbjct: 4 VAIVGRPNVGKSTFFNRMIQRREAIVDAVSGVTRDRHYGKSDWNGREFSLIDTGGYVKGS 63 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +++ Q ELAI+EA I+F++ + G+T D + LR+ P + NK+D Sbjct: 64 DDVFETEIDKQVELAIDEADAIIFMVSVEDGVTGMDEDVLKLLRRSQKPFFVAVNKVDAA 123 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 Q + E Y++ ++ +S+ + GT +L + Sbjct: 124 NRQNDAVEFYNMGIEKFYTLSSINGSGTGDLLDAL------------------------- 158 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 + S + K + R AVVGRPN GKS+ IN L+G +R + +G TRDS+ Sbjct: 159 ----VDSLPEEEEKVEEELPRFAVVGRPNAGKSSFINALIGEDRYIVTDIAGTTRDSIDT 214 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 +N + DTAG+R+ +++ E LE +V +S++++ + I++ DAT F+ Q Sbjct: 215 RYNRFGFEFNLVDTAGIRRKAKVKEDLEFYSVMRSVRAIEHSDVIILVFDATRGFDGQ-- 272 Query: 305 RIVDSVFNTGH----AVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 V ++F H VV+ NKWD+V +++ + D+ I +S Sbjct: 273 --VQNIFWLAHRNNKGVVILANKWDLVEKDNESVKEYEKMIRQQCEPFVDVPIVFMSVLN 330 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 + + + + +E+ + RI TS LN + + PPP +Y ++KYITQ+ + Sbjct: 331 KQRIFKAIETAVEVYQNRSKRIKTSVLNDTMLPIIERYPPPAYKAKYIKIKYITQLPTPY 390 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 P+F F P + E+YKR+L N+LR F G+P+ Sbjct: 391 PAFAFFANLPQYVKEAYKRFLENKLREEFDFKGVPV 426 >gi|307292007|ref|ZP_07571876.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0411] gi|306497005|gb|EFM66553.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0411] Length = 436 Score = 237 bits (605), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 140/457 (30%), Positives = 235/457 (51%), Gaps = 31/457 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAIVG PNVGKST+FNR+ +++++V + PG+TRDR+Y G F+I+DT GI D Sbjct: 5 TIAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYTTGEWLGREFSIIDTGGI-DL 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + Q+ Q E+AI+EA +I+F+ + GIT D + L + N P+I+ NK+D Sbjct: 64 GDEPFMDQIKHQAEIAIDEADVIIFVASGREGITDADELVAKILYRSNKPVILAVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + YE Y+L + +S H LG ++ K F PN E E+ Sbjct: 124 PEMRNDIYEFYALGLGDPFPVSGSHGLGIGDVLDEAVKHF----PNTSEEEDEDT----- 174 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 ++ +++GRPNVGKS+LIN +LG +R++ G TRD++ Sbjct: 175 --------------------IKFSLIGRPNVGKSSLINAILGEDRVIVSDIEGTTRDAID 214 Query: 244 ISW-NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + + + + DTAGMRK ++ ES E+ +V ++M+++ + +++L+A +Q Sbjct: 215 TYFESEEGQKFLMIDTAGMRKRGKVYESTEKYSVMRAMRAIERSDIVLMVLNAEEGIREQ 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D R+ G +++ +NKWD V N ++D + + I +S T + Sbjct: 275 DKRVAGYAHEAGRGIIIVVNKWDTVKKDTNTMRDFEAEIRDEFQYLDYAPIIFVSALTKQ 334 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 L+ L + ++ RI ++ LN + NP PT + ++ Y TQ+ PP+ Sbjct: 335 RLNKLPELIETVSMNQNLRIPSALLNDVVMDAVSINPTPTDKGKRLKIFYATQVAVKPPT 394 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 F+IF + SY R+L N++R F+ G PI++ Sbjct: 395 FVIFVNEEELMHFSYARFLENQIRKAFTFEGTPIKII 431 >gi|260591202|ref|ZP_05856660.1| ribosome-associated GTPase EngA [Prevotella veroralis F0319] gi|260537067|gb|EEX19684.1| ribosome-associated GTPase EngA [Prevotella veroralis F0319] Length = 437 Score = 237 bits (605), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 150/458 (32%), Positives = 239/458 (52%), Gaps = 30/458 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +AIVG PNVGKSTLFNRL + + A+V + G TRDR YG+ NG F++VDT G Sbjct: 1 MANLVAIVGRPNVGKSTLFNRLTQTRHAIVSDTAGTTRDRQYGKCQWNGREFSVVDTGGW 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + + Q +A EA L+LFL+D++ G+T +D + LR+ +P+++V+NK Sbjct: 61 VVKSDDVFEDAIRKQVLVATEEADLVLFLVDTETGVTDWDEDVAMILRRTKLPVLLVANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D E Y L + + ISA T + K + P E I Sbjct: 121 VDNSGEYYQAAEFYKLGLGDPICISA----ATGGGTGDLLDTLLDKLKDVPDETI----- 171 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 NE+ P R AVVGRPN GKS++IN +G +R + +G TRD Sbjct: 172 NEDIP-------------------RFAVVGRPNAGKSSIINAFIGEDRNIVTEIAGTTRD 212 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ + + DTAG+R+ +++TE LE +V +S++S+ + I++LDAT E Sbjct: 213 SIYTRYTKFGFDFYLVDTAGIRRKNKVTEDLEFYSVMRSIRSIENADVCILMLDATRGIE 272 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKN-LPQIGDIYINTISGR 359 QD+ I + ++V+ +NKWD+V DK + D AI++ + D I S Sbjct: 273 SQDMNIFQLIQRNNKSLVVVVNKWDLVPDKNQKVIDTFVNAIRSRMAPFVDFPIIFASAL 332 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 T + + ++ + E+ + K I T+ LN + PP ++ +Y ++KY +Q+ ++ Sbjct: 333 TKQRIFKVLETAKEVYQNRKIHIGTTKLNEVMLPIIEATPPQSVKGKYIKIKYCSQLPNT 392 Query: 420 P-PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 PSF+ + P + E Y+R+L N+LR N++L G PI Sbjct: 393 QIPSFVFYANLPQYVKEQYRRFLENKLRENWNLHGCPI 430 >gi|225024393|ref|ZP_03713585.1| hypothetical protein EIKCOROL_01268 [Eikenella corrodens ATCC 23834] gi|224942774|gb|EEG23983.1| hypothetical protein EIKCOROL_01268 [Eikenella corrodens ATCC 23834] Length = 485 Score = 237 bits (605), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 153/469 (32%), Positives = 232/469 (49%), Gaps = 34/469 (7%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M TIA+VG PNVGKSTLFNRL + K A+V + PG+TRDR YG + + +VDT G Sbjct: 1 MKPTIALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVVDTGGF 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + I +M QT A++EA ++FL+D++ G+TP D I LR+ P+ + NK Sbjct: 61 EPVVDSGILHEMAKQTLQAVDEADAVIFLVDARTGLTPQDKIIADRLRQSPRPVYLAVNK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + E Y L E IS H G ++ + ++ N P Sbjct: 121 GEGGRRDVLAAEFYELALGEPHVISGAHGDG-------VYYLMEEVLENFP--------- 164 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 E+ +E+ SE K V AV+GRPNVGKSTL+N +LG R++ +G TRD Sbjct: 165 --EATEED--SEVKHPV--------FAVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRD 212 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ I + P I DTAG+R+ ++ E++E+ +V K+MQ+V +++LDA Sbjct: 213 SIHIDFERDGKPFTIIDTAGVRRRGKVEEAVEKFSVIKAMQAVEASNVAVLVLDAQQDIA 272 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKL--NLLQDLRTKAIKNLPQIGDIYINTISG 358 QD I G A+V+A+NKWD +S++ + +D+ K L + + IS Sbjct: 273 DQDATIAGFALEAGRALVVAVNKWDGISEERRNTIKKDIEHK----LHFLDFAKFHFISA 328 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 G+D L S+ ++ T + LQ + P +++Y Q Sbjct: 329 LKERGIDGLFASIQSAYDAAFIKMPTPKITRVLQSAIERQQPARAGLVRPKMRYAHQGGM 388 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 +PP +I + +SY RYL R F+L G P+R+ + S NPY Sbjct: 389 NPPVIVIHGNSLQHVADSYTRYLTQTFRKAFNLQGTPLRIQYNISDNPY 437 >gi|332637852|ref|ZP_08416715.1| GTP-binding protein Der [Weissella cibaria KACC 11862] Length = 436 Score = 237 bits (605), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 131/456 (28%), Positives = 238/456 (52%), Gaps = 31/456 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKST+FNR+ ++++V + PG+TRDR+Y +A F ++DT GI D Sbjct: 6 VAVVGRPNVGKSTIFNRIAGDRISIVEDTPGVTRDRIYTRAEWLTREFRLIDTGGI-DMA 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + Q+ Q E+AI+EA +I+F++ ++ G+T D + L + P+++ NK+D Sbjct: 65 DEPFMTQIVQQAEIAIDEADVIVFMVSAQEGLTEADERVAKILYRSKKPVVLAVNKVDNI 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + YE Y+L F + IS H G +L + F + +N+ +++S Sbjct: 125 EMRSEIYEFYALGFGDPFPISGSHGTGLGDLLDQVVSHFPET----------DNEADDDS 174 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 +R + +GRPNVGKS+L+N +LG R++ SG TRD++ Sbjct: 175 -------------------IRFSFIGRPNVGKSSLVNAILGEERVIVSDISGTTRDAIDT 215 Query: 245 SWNWKN-HPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + + + DTAG+RK ++ ES E+ +V ++M+++ +++L+A +QD Sbjct: 216 RFTSADGDEFVMVDTAGIRKRGKVYESTEKYSVMRAMRAIDDSNVVLMVLNAEEGIREQD 275 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 + G A+++ +NKWD + + + D + + I +S +T + Sbjct: 276 KHVAGYAHEAGRAIIIVVNKWDTLEKDNHTMSDFENQIRDEFQYLSYAPIIFVSAKTKQR 335 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 L+ L + ++N+ + R+ ++ LN + NP PT+ + R+ Y TQ+ PP+F Sbjct: 336 LNKLPELIKQVNENHQKRVQSATLNEVIMDALALNPTPTVNGKRLRVYYATQVAIQPPTF 395 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 ++F P + SY R+L N++R +F +G PI + Sbjct: 396 VVFVNDPELMHFSYARFLENQIRKSFDFTGTPIHLI 431 >gi|317506861|ref|ZP_07964633.1| ribosome-associated GTPase EngA [Segniliparus rugosus ATCC BAA-974] gi|316254789|gb|EFV14087.1| ribosome-associated GTPase EngA [Segniliparus rugosus ATCC BAA-974] Length = 449 Score = 237 bits (605), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 151/458 (32%), Positives = 227/458 (49%), Gaps = 40/458 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI---A 61 +A+VG PNVGKSTL NR V ++ AVV + PG+TRDR+ A G F + DT G A Sbjct: 13 VAVVGRPNVGKSTLVNRFVGRRAAVVEDVPGVTRDRVSYDAEWGGRSFLVQDTGGWEPDA 72 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 G SIA+Q ELA+ A +IL ++D++AG T D A+ LR+ P+ +V+NK Sbjct: 73 TGIGLSIAQQ----AELAMATADVILLVVDAQAGPTGVDEALAKSLRRSKKPVFLVANKS 128 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D + ++SL +SA H G+ +L + + P ++ + Sbjct: 129 DNPQIEDESSGLWSLGLGRPYPVSALHGKGSGDLLDAALE-------SVPAVLVAEH--- 178 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 E P+ P R+A+VGRPNVGKS+LIN+L G R + +G T D Sbjct: 179 -EGPR----------------PRRVALVGRPNVGKSSLINKLAGETRSVVNEMAGTTVDP 221 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 V + + DTAG+R+ E ++ ++ E IVL+DA++P + Sbjct: 222 VDSIITLDDEEWQFVDTAGLRRKVGHASGHEFYAAVRTKSAIEAAEVVIVLIDASVPLTE 281 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMV-SDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 QD RI V G A+VLA NKWD+V D+ + L+ + + + + I+ +SGR Sbjct: 282 QDQRIFGMVGEAGRAMVLACNKWDLVDEDRRHELEKELDRGLTRVTWAPRVNISALSGRA 341 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 L + L W+ RI T LN W + PPP + RL Y+TQ + P Sbjct: 342 VHKLAPALRVAL---SSWEERIPTGELNQWFSEIIAATPPPPRSGKIPRLLYVTQATTQP 398 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 P+F++F T + Y+R+L +LR F G PI++ Sbjct: 399 PTFVLFTT--GFLEAGYRRFLERKLRETFGFEGTPIQI 434 >gi|302335702|ref|YP_003800909.1| ribosome-associated GTPase EngA [Olsenella uli DSM 7084] gi|301319542|gb|ADK68029.1| ribosome-associated GTPase EngA [Olsenella uli DSM 7084] Length = 439 Score = 237 bits (605), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 142/465 (30%), Positives = 236/465 (50%), Gaps = 43/465 (9%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTL NRL + A+V G+TRDR Y NG F ++DT GI + Sbjct: 6 VAVVGRPNVGKSTLVNRLAVNRDAIVHESRGVTRDRSYHACDWNGREFVLIDTGGIESAR 65 Query: 65 NCSI-AKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + + A ++ +Q +A +EA I+F++D G+T D + +R+ P+ + NKMD Sbjct: 66 SKDVFAPRIREQALVACDEADAIIFVVDGSVGVTDEDEEVARVVRRTRKPVFLCVNKMDD 125 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + + YSL E +SA H GT +L + E Sbjct: 126 PSTELDAWNFYSLGVGEPRALSAGHGYGTGDLLDDVVASLP------------------E 167 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 +E +G L +A++GRPNVGKS+L NRL R + +G TRD+V Sbjct: 168 IREEPAVDDGT---------LNVAIIGRPNVGKSSLTNRLARRERSIVADVAGTTRDAVD 218 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 I+ WK + DTAGMRK +++ E +E ++ + ++++ + ++++D+T+ +QD Sbjct: 219 ITIAWKGQRFCLVDTAGMRKRNQVHEDVEYYSLVRGLEAMDRADVCLLVVDSTVGVTEQD 278 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVS-----DKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 ++ + G AVV+ LNKWD+++ D++ D R P + +S Sbjct: 279 QKLAGMAIDRGCAVVIVLNKWDLITGDRQRDEVMSSLDARMTFATWAPAV------NVSA 332 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLK--YITQI 416 TG +D ++ + + +++ T LN+ + TQ++ T+ + RLK Y Q Sbjct: 333 LTGRAVDSVLAAAAKAAANHSSQVKTPQLNNLV--TQIRESGHTVTQKNRRLKIHYAAQT 390 Query: 417 QSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 S PP + FC P+ + + Y+R+L +RLR F L G PIR+ F+ Sbjct: 391 GSRPPVYTFFCNAPDLVDDGYERFLEHRLRDAFDLEGTPIRLKFR 435 >gi|154505327|ref|ZP_02042065.1| hypothetical protein RUMGNA_02842 [Ruminococcus gnavus ATCC 29149] gi|153794370|gb|EDN76790.1| hypothetical protein RUMGNA_02842 [Ruminococcus gnavus ATCC 29149] Length = 450 Score = 237 bits (605), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 142/472 (30%), Positives = 241/472 (51%), Gaps = 49/472 (10%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFN L +++++V + PG+TRDR+Y F ++DT GI Sbjct: 14 VAIVGRPNVGKSTLFNTLAGERISIVKDTPGVTRDRIYADVSWLDKEFTMIDTGGIEPDS 73 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + I QM +Q ++AI+ A +I+F+ D + G+ D + LR+ P+++V NK+D Sbjct: 74 SDIILSQMREQAQIAIDTADVIVFITDVRQGLVDADSKVADMLRRSKKPVVLVVNKVD-- 131 Query: 125 IAQRNF-------YEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 NF YE Y+L + V ISA LG ++ + F Sbjct: 132 ----NFDKFMPDVYEFYNLGIGDPVPISAASRLGIGDMLDEVVSHF-------------- 173 Query: 178 NKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGI 237 EG + +P +IA+VG+PNVGKS+++N+LLG NR++ +G Sbjct: 174 -------------PEGAGETEEDERP-KIAIVGKPNVGKSSIVNKLLGENRVIVSDIAGT 219 Query: 238 TRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATI 297 TRD++ + ++ DTAG+R+ ++I E LE+ ++ +++ +V + ++++DAT Sbjct: 220 TRDAIDTAIKHEDREYIFIDTAGLRRKNKIKEELERFSIIRTVTAVERADVVLMVIDATE 279 Query: 298 PFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQ----DLRTKAIKNLPQIGDIYI 353 +QD +I G V++ +NKWD + ++ D+RT + +P +Y+ Sbjct: 280 GVTEQDAKIAGIAHERGKGVIIVVNKWDAIEKNDKTMKQYENDIRT-TLAYMPYAEIMYV 338 Query: 354 NTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYI 413 + +G+ L D++ V++ L RI T LN + + PP+ + +L YI Sbjct: 339 SAKTGQRLNKLYDMIDMVIDSQTL---RIQTGVLNEIMMEAVAMQQPPSDKGKRLKLYYI 395 Query: 414 TQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 TQ+ PP+F+IF + SY RYL N++R F G ++ + K Sbjct: 396 TQVSVKPPTFVIFVNDKELMHFSYTRYLENKIREAFGFRGTSLKFFIRERKE 447 >gi|291563224|emb|CBL42040.1| ribosome-associated GTPase EngA [butyrate-producing bacterium SS3/4] Length = 441 Score = 237 bits (605), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 140/464 (30%), Positives = 237/464 (51%), Gaps = 35/464 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFN L +++V + PG+TRDR+Y F ++DT GI Sbjct: 6 VAIVGRPNVGKSTLFNVLAGSTISIVKDTPGVTRDRIYADCTWLNNNFTLIDTGGIEPDS 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I QM +Q ++AI+ A +I+F++D + G+ D + LRK P+++ NK+D+ Sbjct: 66 KDIILAQMREQAQIAIDTADVIIFIVDVRQGLVDADSKVADMLRKSKKPVVLAVNKVDSM 125 Query: 125 IAQRN-FYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 N YE Y+L + V +SA LG EL + K F++ + + ++ Sbjct: 126 AKFGNDVYEFYNLGIGDPVPVSAASRLGLGELLDEVVKYFRED---------QYDDSEDD 176 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 P RIA+VG+PNVGKS++IN+LLG NR++ + +G TRD+V Sbjct: 177 RP-------------------RIAIVGKPNVGKSSIINKLLGENRVIVSNIAGTTRDAVD 217 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 DTAG+R+ S+I E +E+ ++ +++ +V + ++++DA +QD Sbjct: 218 TEIVRNGTEYIFIDTAGLRRKSKIKEDIERYSIIRTVTAVERADVVLMVIDAVEGITEQD 277 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTK---AIKNLPQIGDIYINTISGRT 360 +I + G V++ +NKWD + + + K + +P I+++ ++G+ Sbjct: 278 AKIAGIAHDRGKGVIVVVNKWDAIEKNDKTIYEYTRKLKETLSYMPYAEYIFVSALTGQR 337 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 E L +L+ V E L R+ T LN + + PP+ + ++ Y+TQ+ P Sbjct: 338 MEKLFELIDMVRENQTL---RVATGVLNEIVTEAVAMQQPPSDKGKRLKIYYVTQVAVKP 394 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 P+F+IF + SY RYL N++R F G ++ + K Sbjct: 395 PTFVIFVNDKELMHFSYTRYLENKIREAFGFRGTSLKFIIRERK 438 >gi|315150548|gb|EFT94564.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0012] Length = 436 Score = 237 bits (604), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 140/457 (30%), Positives = 238/457 (52%), Gaps = 31/457 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAIVG PNVGKST+FNR+ +++++V + PG+TRDR+Y G F+I+DT GI D Sbjct: 5 TIAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYTTGEWLGREFSIIDTGGI-DL 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + Q+ Q E+AI+EA +I+F+ + GIT D + L + N P+I+ NK+D Sbjct: 64 GDEPFMDQIKHQAEIAIDEADVIIFVASGREGITDADELVAKILYRSNKPVILAVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + YE Y+L + +S H LG ++ K F PN Sbjct: 124 PEMRNDIYEFYALGLGDPFPVSGSHGLGIGDVLDEAVKHF----PNT------------- 166 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 S +E++ + ++ +++GRPNVGKS+LIN +LG +R++ G TRD++ Sbjct: 167 SEEEDVDT------------IKFSLIGRPNVGKSSLINAILGEDRVIVSDIEGTTRDAID 214 Query: 244 ISW-NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + + + + DTAGMRK ++ ES E+ +V ++M+++ + +++L+A +Q Sbjct: 215 TYFESEEGQKFLMIDTAGMRKRGKVYESTEKYSVMRAMRAIERSDIVLMVLNAEEGIREQ 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D R+ G +++ +NKWD V N ++D + + I +S T + Sbjct: 275 DKRVAGYAHEAGRGIIIVVNKWDTVKKDTNTMRDFEAEIRDEFQYLDYAPIIFVSALTKQ 334 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 L+ L + ++ RI ++ LN + NP PT + ++ Y TQ+ PP+ Sbjct: 335 RLNKLPELIETVSMNQNLRIPSALLNDVVMDAVAINPTPTDKGKRLKIFYATQVAVKPPT 394 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 F+IF + SY R+L N++R F+ G PI++ Sbjct: 395 FVIFVNEEELMHFSYVRFLENQIRKAFTFEGTPIKII 431 >gi|254499341|ref|ZP_05112012.1| GTP-binding protein EngA [Legionella drancourtii LLAP12] gi|254351446|gb|EET10310.1| GTP-binding protein EngA [Legionella drancourtii LLAP12] Length = 468 Score = 237 bits (604), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 155/473 (32%), Positives = 244/473 (51%), Gaps = 37/473 (7%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI IA+VG PNVGKSTLFNRL K + A+V + PG+TRDR YGQA N + +VDT GI Sbjct: 1 MIPVIALVGRPNVGKSTLFNRLTKTQDALVADFPGLTRDRQYGQAQHNEKSYIVVDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + ++ M+ Q+ +A+NEA ++LFL+D ++G+T D I + LRK + + +V NK Sbjct: 61 G-VDDIAVDSLMSKQSTIALNEADIVLFLVDGRSGLTGVDEKIANNLRKLSKKVHLVVNK 119 Query: 121 ---MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 +D +A +F + D I S L +V+ Q P E+ E+ Sbjct: 120 TEGLDDDVACADFQSLGIADIHSISSSHGSGIY--SLLDAVLAPFLSQ-----PDEVAED 172 Query: 178 NKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGI 237 + ++IA GRPNVGKSTLINR+LG R++ G Sbjct: 173 D------------------------AIKIAFAGRPNVGKSTLINRILGEERVVVYDMPGT 208 Query: 238 TRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATI 297 TRDS++I + + DTAG+R+ SRI E +E+ +V K++Q+++ + LLDA Sbjct: 209 TRDSIAIPFVRDEQRYILIDTAGVRRKSRIDEKIEKFSVIKTLQAIKESNVCLQLLDANE 268 Query: 298 PFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTIS 357 QD+ ++ + +G A+V+A+NKWD + ++ + ++++ + L I IS Sbjct: 269 GITDQDMNLLGFIIESGKALVIAVNKWDGLDEEHKDM--IKSELSRRLHFANFAKIRFIS 326 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 G G+ L + E +T L LQ ++ PP + R +L+Y Sbjct: 327 ALHGSGVGTLFKDINEAYASAIQSFSTPRLTRLLQDISTKHTPPCVNGRRIKLRYAHLGG 386 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I +P+SYKRYL N + L G P+++ F+ NP+ +K Sbjct: 387 HNPPVIVIHGNQLADLPDSYKRYLNNEFTKHLELVGTPLKIEFKGGANPFAEK 439 >gi|261379855|ref|ZP_05984428.1| ribosome-associated GTPase EngA [Neisseria subflava NJ9703] gi|284797551|gb|EFC52898.1| ribosome-associated GTPase EngA [Neisseria subflava NJ9703] Length = 485 Score = 237 bits (604), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 148/472 (31%), Positives = 227/472 (48%), Gaps = 40/472 (8%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M TIA+VG PNVGKSTLFNRL + K A+V + PG+TRDR YG + + ++DT G Sbjct: 1 MKPTIALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVIDTGGF 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + I +M QT A++EA ++FL+D + G+TP D I LR+ P+ + NK Sbjct: 61 EPVVDSGILHEMAKQTLQAVDEADAVVFLVDGRTGLTPQDKIIADRLRQSPRPVYLAVNK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKY-----PNHPLEMI 175 + E Y L + IS H G L I + F + HP+ Sbjct: 121 GEGGNRAVLAAEFYELALGDPYVISGAHGDGVYYLIEDILETFPEPEKEEEEAKHPV--- 177 Query: 176 ENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQS 235 AV+GRPNVGKSTL+N +LG R++ + Sbjct: 178 ------------------------------FAVIGRPNVGKSTLVNAILGEERVIAFDMA 207 Query: 236 GITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDA 295 G TRDS+ I + + P I DTAG+R+ ++ E++E+ +V K+MQ+V +++LDA Sbjct: 208 GTTRDSIHIDFEREGKPFTIIDTAGVRRRGKVDEAVEKFSVIKAMQAVEAANVAVLVLDA 267 Query: 296 TIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINT 355 QD I V G A+V+A+NKWD +S++ + ++ + L + + Sbjct: 268 QQDIADQDATIAGFVLEAGRALVVAVNKWDGISEERR--EQVKRDINRKLYFLDFAKFHF 325 Query: 356 ISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQ 415 IS G+D L S+ ++ T + LQ + PP +++Y Q Sbjct: 326 ISALKERGIDGLFESIQAAYNAAMIKMPTPKITRVLQSAIERQQPPRAGLVRPKMRYAHQ 385 Query: 416 IQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 +PP ++ + I +SY RYL R F+L G P+R+ + S+NPY Sbjct: 386 GGMNPPVIVVHGNSLHAISDSYTRYLTQTFRKAFNLQGTPLRIQYNVSENPY 437 >gi|326331287|ref|ZP_08197579.1| ribosome-associated GTPase EngA [Nocardioidaceae bacterium Broad-1] gi|325950920|gb|EGD42968.1| ribosome-associated GTPase EngA [Nocardioidaceae bacterium Broad-1] Length = 461 Score = 237 bits (604), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 143/452 (31%), Positives = 235/452 (51%), Gaps = 30/452 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ A NG F +VDT G D Sbjct: 28 VAVVGRPNVGKSTLVNRIIGRREAVVQDVPGVTRDRVSYDADWNGKAFTLVDTGGW-DPD 86 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +A+++ Q E+A++ A +LF++D+ GIT D A+ LRK P+++V+NK+D Sbjct: 87 AQGLAERIAAQAEIAVSLADAVLFVVDATVGITDADEAVVRILRKSGKPVVLVANKVDDM 146 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + +++L E +SA H G+ ++ I + P Sbjct: 147 RTEAEASALWNLGLGEPWPVSALHGRGSGDMLDAILAVLPDPPP---------------- 190 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 EG I P RIA+VG+PNVGKS+L+N+L R + + +G T D V Sbjct: 191 -----LPEG----TEIGGPRRIALVGKPNVGKSSLLNKLAKEERAVVDNVAGTTVDPVDE 241 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 DTAG+RK + + E ++ ++ E ++++D +QD+ Sbjct: 242 LIELGGREWRFIDTAGIRKRVKESSGHEYYASLRTTTAIDRAEVAVLVIDGGEKISEQDI 301 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 RI+ +V G A+V+A NKWD+V + D + + L Q+ I+ RTG + Sbjct: 302 RILQTVREAGRALVIAFNKWDLVDEDRRWQLDREIE--RELVQVQWAPRINITARTGWHV 359 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 D L+ ++ + + W+TRI T LNS+L + ++P P + ++ + TQ ++PP+F+ Sbjct: 360 DRLVPALDKALEGWETRIGTGALNSFLGRLVAEHPHPVRSGKQPKILFGTQPSTAPPTFI 419 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 +F + K+ SY+R++ RLR F G PI Sbjct: 420 LFTS--GKLDASYERFIERRLREEFGFVGTPI 449 >gi|262341130|ref|YP_003283985.1| GTP-binding protein EngA [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272467|gb|ACY40375.1| GTP-binding protein EngA [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 443 Score = 237 bits (604), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 158/465 (33%), Positives = 248/465 (53%), Gaps = 28/465 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M YT++IVG PNVGKST FNRLV ++ A+V G+TRDR++G + NGV F++VDT G Sbjct: 1 MNYTVSIVGRPNVGKSTFFNRLVGRRKAIVHITSGVTRDRIFGNSEWNGVKFSVVDTGGF 60 Query: 61 --ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVS 118 A +N + K++ +Q +AI EA +ILFL+D K G+ D I LRK ++V Sbjct: 61 SFATSENDVLEKEIKNQIFIAIKEADVILFLVDIKMGVLDTDREIAKILRKSQKITLLVV 120 Query: 119 NKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 NK+D I + + + L F+ ISA + GT EL + +IFK K+ ++I Sbjct: 121 NKVDNGILYSD-TDFFHLGFENCYYISAINGSGTGELLDKLVEIFKDKFVQKKEKIINK- 178 Query: 179 KRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 E P R +VVGRPNVGKSTLIN L N + SG T Sbjct: 179 ---EFLP-------------------RFSVVGRPNVGKSTLINSFLDKNHHIVTHISGTT 216 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RDS+ + + + + DT G+RK S+I E++E + ++++++ + ++++DA Sbjct: 217 RDSLDVFYKKWGYECILVDTPGVRKKSKIRENIEFYSSIRTVRTIEYTDVCLLMVDAVRG 276 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDK-LNLLQDLRTKAIKNLPQIGDIYINTIS 357 +EKQD I V +++ +NKWD+ +K ++ + K + ++ I IS Sbjct: 277 WEKQDTNIFRLVKTNHKGIIILVNKWDLFHNKNFSIQKHFEFLIRKKISPFENVPILFIS 336 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNS-WLQKTQLQNPPPTIFNRYNRLKYITQI 416 + G+ ++ +I K K R+ T+ LN L + PP + +KY TQ+ Sbjct: 337 AKNKNGIHHIIPLADQILKSRKNRLKTNILNKIMLPILKKNPPPSKKKKKLITIKYCTQL 396 Query: 417 QSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 S P F+ F FP I ESYKR++ N++R +F G+PI++ F+ Sbjct: 397 PSCTPIFIFFSNFPQYIKESYKRFVENQIRSHFDFRGVPIQIFFR 441 >gi|332670393|ref|YP_004453401.1| ribosome-associated GTPase EngA [Cellulomonas fimi ATCC 484] gi|332339431|gb|AEE46014.1| ribosome-associated GTPase EngA [Cellulomonas fimi ATCC 484] Length = 491 Score = 236 bits (603), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 144/457 (31%), Positives = 233/457 (50%), Gaps = 31/457 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ A G F +VDT G + Sbjct: 59 LAVVGRPNVGKSTLVNRILGRREAVVEDMPGVTRDRVSYPAEWAGRRFTLVDTGGW-EVD 117 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I ++ +Q E+AI A +LF++D+ G T D + LR+ P+++ +NK+D Sbjct: 118 VAGIDARVAEQAEVAIALADAVLFVVDATVGATDTDEQVVRLLRRSGKPVVLCANKVDGP 177 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + +++L E +SA H GT +L E+ + K + Sbjct: 178 AVEADAAALWALGLGEPHPVSALHGRGTGDLLEAAVDALP--------EVSAHAKPVPDG 229 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P+ R+A+VGRPNVGKS+L+N++LG R++ + +G TRD V Sbjct: 230 PR------------------RVALVGRPNVGKSSLLNKVLGAERVVVDAVAGTTRDPVDE 271 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 K P DTAG+R+ T + ++ ++ E +VL+DA+ P +QD Sbjct: 272 LVLLKGEPWVFVDTAGIRRRVHQTSGPDFYASLRTQAAIEKAEVAVVLVDASAPLTEQDT 331 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 R++ V + G A+V+A NKWD++ + L + K+L Q+ IS RTG Sbjct: 332 RVISQVVDAGRALVVAYNKWDLMDEDRRPY--LEREIEKDLVQVQWAPRVNISARTGWHT 389 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 D L+ ++ + W TRI+T LN++L + +P P + R+ + TQ + PP F+ Sbjct: 390 DRLVPALQRSLESWDTRISTGRLNAFLGELVAAHPHPLRGGKQPRILFATQASTRPPRFV 449 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 +F T + Y+RY+ RLR F G PI + + Sbjct: 450 VFTT--GFLDPGYRRYIERRLRETFGFEGSPISISVR 484 >gi|225389099|ref|ZP_03758823.1| hypothetical protein CLOSTASPAR_02845 [Clostridium asparagiforme DSM 15981] gi|225044833|gb|EEG55079.1| hypothetical protein CLOSTASPAR_02845 [Clostridium asparagiforme DSM 15981] Length = 441 Score = 236 bits (603), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 142/462 (30%), Positives = 232/462 (50%), Gaps = 29/462 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFN L + +++V + PG+TRDR+Y + F ++DT GI Sbjct: 6 VAIVGRPNVGKSTLFNVLAGETISIVKDTPGVTRDRIYADCSWLNMNFTLIDTGGIEPDT 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + I QM +Q E+AI A +I+F++D + G+ D + LRK P+++ NK+D+ Sbjct: 66 SDVILSQMREQAEIAIATADVIVFIVDVRQGLVDADTKVADMLRKSRKPVVLAVNKVDSY 125 Query: 125 IAQRN-FYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 N YE Y+L + V +SA LG +L + K F + + + +E Sbjct: 126 EKFGNDVYEFYNLGIGDPVPVSAASRLGIGDLLDEVVKYF---------DCAKLEEEEDE 176 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 P RIAVVG+PNVGKS++IN+LLG NR++ +G TRD+V Sbjct: 177 RP-------------------RIAVVGKPNVGKSSIINKLLGENRVIVSDIAGTTRDAVD 217 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 P DTAG+R+ S+I E LE+ ++ +++ +V + +V++DA +QD Sbjct: 218 TEIVHDGTPYVFIDTAGLRRKSKIHEELERYSIIRTVTAVERADIVVVVIDAKEGVTEQD 277 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 +I G +++A+NKWD + + + K + L I +S TG+ Sbjct: 278 AKIAGIAHERGKGIIVAVNKWDAIEKNDKTIYEYTNKLKEILSFIPYAEYLFVSAATGQR 337 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 L L + + + R++T LN + + PP+ + ++ Y+TQ+ PP+F Sbjct: 338 LPKLFEVIDAVRQNQNLRVSTGVLNEIMAEAVAMQQPPSDKGKRLKIYYMTQVAVKPPTF 397 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 + F + SY RYL N++R F G ++ + K Sbjct: 398 VAFVNDKELMHFSYVRYLENQIRSAFGFRGTSLKFVIRERKE 439 >gi|29376112|ref|NP_815266.1| GTP-binding protein EngA [Enterococcus faecalis V583] gi|227518740|ref|ZP_03948789.1| GTP-binding protein EngA [Enterococcus faecalis TX0104] gi|227553350|ref|ZP_03983399.1| GTP-binding protein EngA [Enterococcus faecalis HH22] gi|257419285|ref|ZP_05596279.1| GTP-binding protein engA [Enterococcus faecalis T11] gi|37999534|sp|Q834T4|DER_ENTFA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|29343574|gb|AAO81336.1| GTPase, putative [Enterococcus faecalis V583] gi|227073821|gb|EEI11784.1| GTP-binding protein EngA [Enterococcus faecalis TX0104] gi|227177519|gb|EEI58491.1| GTP-binding protein EngA [Enterococcus faecalis HH22] gi|257161113|gb|EEU91073.1| GTP-binding protein engA [Enterococcus faecalis T11] gi|315575878|gb|EFU88069.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0309B] gi|315580530|gb|EFU92721.1| ribosome-associated GTPase EngA [Enterococcus faecalis TX0309A] Length = 436 Score = 236 bits (603), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 140/457 (30%), Positives = 234/457 (51%), Gaps = 31/457 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAIVG PNVGKST+FNR+ ++++V + PG+TRDR+Y G F+I+DT GI D Sbjct: 5 TIAIVGRPNVGKSTIFNRIAGVRISIVEDTPGVTRDRIYTTGEWLGREFSIIDTGGI-DL 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + Q+ Q E+AI+EA +I+F+ + GIT D + L + N P+I+ NK+D Sbjct: 64 GDEPFMDQIKHQAEIAIDEADVIIFVASGREGITDADELVAKILYRSNKPVILAVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + YE Y+L + +S H LG ++ K F PN E E+ Sbjct: 124 PEMRNDIYEFYALGLGDPFPVSGSHGLGIGDVLDEAVKHF----PNTSEEEDEDT----- 174 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 ++ +++GRPNVGKS+LIN +LG +R++ G TRD++ Sbjct: 175 --------------------IKFSLIGRPNVGKSSLINAILGEDRVIVSDIEGTTRDAID 214 Query: 244 ISW-NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + + + + DTAGMRK ++ ES E+ +V ++M+++ + +++L+A +Q Sbjct: 215 TYFESEEGQKFLMIDTAGMRKRGKVYESTEKYSVMRAMRAIERSDIVLMVLNAEEGIREQ 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D R+ G +++ +NKWD V N ++D + + I +S T + Sbjct: 275 DKRVAGYAHEAGRGIIIVVNKWDTVKKDTNTMRDFEAEIRDEFQYLDYAPIIFVSALTKQ 334 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 L+ L + ++ RI ++ LN + NP PT + ++ Y TQ+ PP+ Sbjct: 335 RLNKLPELIETVSMNQNLRIPSALLNDVVMDAVAINPTPTDKGKRLKIFYATQVAVKPPT 394 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 F+IF + SY R+L N++R F+ G PI++ Sbjct: 395 FVIFVNEEELMHFSYARFLENQIRKAFTFEGTPIKII 431 >gi|218294927|ref|ZP_03495781.1| small GTP-binding protein [Thermus aquaticus Y51MC23] gi|218244835|gb|EED11359.1| small GTP-binding protein [Thermus aquaticus Y51MC23] Length = 432 Score = 236 bits (603), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 143/473 (30%), Positives = 248/473 (52%), Gaps = 52/473 (10%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 ++ + IVG PNVGKS+LFNRL+ K+ AVV + PG+TRD G F +VDT G+ Sbjct: 1 MHKVVIVGRPNVGKSSLFNRLLGKRSAVVADEPGVTRDLKEGVVETEQGRFLLVDTGGLW 60 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 G K++ ++ + A+ EA L+LF +D ++ +TP D+ + +LRKK P+I+V+ K+ Sbjct: 61 SGDRWE--KKIQEKVDRALEEAELVLFAVDGRSDLTPADYEVAEYLRKKGKPVILVATKV 118 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D+ + +Y+L F + + S+EH G EL I+ Q+ P + Sbjct: 119 DSPSHEAYLGPLYALGFGDPIPTSSEHKRGLEELLRAIW----QRLPVKQM--------- 165 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 + + V I R+A+VGRPN GKS+L+N +LG R++ + G TRD+ Sbjct: 166 ----------DAEPEVAGI----RLAIVGRPNAGKSSLLNAILGEERVIVSEEPGTTRDT 211 Query: 242 VSISWNWKNHPIEIFDTAGMRK-PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 + + + + DTAG+RK P I E L +++S++++ + ++++D PF+ Sbjct: 212 IDVEVYRNGNRFVLLDTAGIRKRPESIVEEL---AIRRSLRAIEEADVVLLVVD---PFQ 265 Query: 301 KQD--LRIVDSVFNTGHAVVLALNKWDMV--SDKLNLLQDLRTKAIKNLPQIGDIYINTI 356 D L++ + G V+L + KWD+V + + ++LR K + +L + +Y + Sbjct: 266 VGDRELKLANHAMEKGKPVLLVITKWDLVKKEEAPRVRRELREK-LAHLEHLPRVYTSAF 324 Query: 357 SGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWL----QKTQLQNPPPTIFNRYNRLKY 412 T + LD + L + +L TR+ T+ LN WL K QL P + ++ Y Sbjct: 325 ---TKQNLDRIFQEALRLYQLNHTRVPTAELNRWLGVWTAKVQL----PNFKGKPLKILY 377 Query: 413 ITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 TQ + +PP+F+ F P + +++ YL NR+ + L +P R+ F+ + Sbjct: 378 ATQPEVAPPTFVFFVNHPEFVTRAFENYLRNRVGEDLGLKEVPFRLVFRGRRE 430 >gi|288575053|ref|ZP_06393410.1| small GTP-binding protein [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570794|gb|EFC92351.1| small GTP-binding protein [Dethiosulfovibrio peptidovorans DSM 11002] Length = 444 Score = 236 bits (603), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 147/466 (31%), Positives = 244/466 (52%), Gaps = 37/466 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + IVG PNVGKS+LFNRL+ ++ A+V + PG+TRDRLYGQ G F +VDT G+ Sbjct: 4 VTIVGRPNVGKSSLFNRLIGERRAIVDDVPGVTRDRLYGQVEWRGNSFYLVDTGGLLLRD 63 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKN-IPIIIVSNKMDT 123 I + M Q A+ E+ +IL +D + G+T D I +RK P+I+V NK+D Sbjct: 64 EDPIMEGMKGQIVQAMEESDVILLSVDGREGLTWMDEDIAMVIRKSAPKPVIVVVNKLDD 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 YE Y L F+++V ISA H G +L + E++ + R E Sbjct: 124 MKFDELVYEAYGLGFQDVVGISAIHARGIDDLL------------DRVCELLPEDDRFFE 171 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV- 242 E +++A+VGRPNVGKS+++NRLLG NR L G TRDS+ Sbjct: 172 EEDE----------------IKVALVGRPNVGKSSILNRLLGENRSLVSDVPGTTRDSID 215 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 S+ + + DTAG+R+ SR + +E + ++M+S+ + +I+++DA Q Sbjct: 216 SLMELDDGRKLRLIDTAGLRRKSRFKDDIEYYSFVRTMESIDRSDVSILVVDAVEGVTDQ 275 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGD----IYINTISG 358 D ++ S+ G +VL +NKWD++ + D + ++++ D ++ + ++G Sbjct: 276 DKKLASSIVERGKGIVLVMNKWDLLKGDGERIGDEKRDSVRDSLVFVDHAPLVFCSALTG 335 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKT-QLQNPPPTIFNRYNRLKYITQIQ 417 R G G L+ +VL + + + R +T+ LN L+ + P + R+ Y TQ Sbjct: 336 R-GVGA-KLLGAVLGVYERRRNRFSTTKLNGLLRDVLAFERLPSDKKGKLLRIYYCTQAG 393 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSS 463 PP F+ F N + S++ +++N++R G+PIR+ +++S Sbjct: 394 VEPPMFVFFVNDRNIVTRSFENHMVNQIRRLGDYDGVPIRLFWRNS 439 >gi|296314652|ref|ZP_06864593.1| ribosome-associated GTPase EngA [Neisseria polysaccharea ATCC 43768] gi|296838560|gb|EFH22498.1| ribosome-associated GTPase EngA [Neisseria polysaccharea ATCC 43768] Length = 485 Score = 236 bits (603), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 148/472 (31%), Positives = 228/472 (48%), Gaps = 40/472 (8%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M TIA+VG PNVGKSTLFNRL + K A+V + PG+TRDR YG + + ++DT G Sbjct: 1 MKPTIALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVIDTGGF 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + I +M QT A++EA ++FL+D + G+TP D I LR+ P+ + NK Sbjct: 61 EPVVDSGILHEMAKQTLQAVDEADAVVFLVDGRTGLTPQDKIIADRLRQSPRPVYLAVNK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF-----KQKYPNHPLEMI 175 + E Y L E IS H G L I + F +++ HP+ Sbjct: 121 GEGGNRAVLAAEFYELALGEPHVISGAHGDGVYYLIEDILETFPESEKEEEEAKHPV--- 177 Query: 176 ENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQS 235 AV+GRPNVGKSTL+N +LG R++ + Sbjct: 178 ------------------------------FAVIGRPNVGKSTLVNAILGEERVIAFDMA 207 Query: 236 GITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDA 295 G TRDS+ I + + P I DTAG+R+ ++ E++E+ +V K+MQ+V +++LDA Sbjct: 208 GTTRDSIHIDFEREGKPFTIIDTAGVRRRGKVDEAVEKFSVIKAMQAVEAANVAVLVLDA 267 Query: 296 TIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINT 355 QD I G A+V+A+NKWD +S++ + ++ + L + + Sbjct: 268 QQDIADQDATIAGFALEAGRALVVAVNKWDGISEEHR--EQIKRDISRKLYFLDFAKFHF 325 Query: 356 ISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQ 415 IS G+D L S+ ++ T + LQ + PP +++Y Q Sbjct: 326 ISALKERGIDGLFDSIQAAYNAAMIKMPTPKITRVLQSAIERQQPPRAGLVRPKMRYAHQ 385 Query: 416 IQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 +PP ++ + I +SY RYL R F+L G P+R+ + S+NPY Sbjct: 386 GGMNPPVIVVHGNSLHAISDSYTRYLTQTFRKAFNLQGTPLRIQYNVSENPY 437 >gi|225374467|ref|ZP_03751688.1| hypothetical protein ROSEINA2194_00082 [Roseburia inulinivorans DSM 16841] gi|225213705|gb|EEG96059.1| hypothetical protein ROSEINA2194_00082 [Roseburia inulinivorans DSM 16841] Length = 449 Score = 236 bits (602), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 142/466 (30%), Positives = 242/466 (51%), Gaps = 39/466 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFN L +++++V + PG+TRDR+Y + F ++DT GI Sbjct: 13 VAIVGRPNVGKSTLFNALAGERISIVQDTPGVTRDRIYAEVSWLDHNFTMIDTGGIEPDS 72 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 N I QM +Q E+AI A +I+F++D + G+ D + LR+ P+++V NK+D+ Sbjct: 73 NDIILSQMREQAEIAIATADVIMFIVDVRQGLQDSDSKVADMLRRSGKPVVLVVNKVDSF 132 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + YE Y+L + +SA LG ++ + K F E K +EE Sbjct: 133 EKYMADVYEFYNLGIGDPFPVSAASMLGLGDMLDEVVKYFP-----------EYKKDDEE 181 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 +P +IA++G+PNVGKS+LIN+L +R++ +G TRD++ Sbjct: 182 D----------------DRP-KIAIIGKPNVGKSSLINKLAQEDRVIVSDIAGTTRDAID 224 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + DTAG+R+ ++I E +E+ ++ +++ +V + I+++DAT +QD Sbjct: 225 TDIKYNGKEYVFIDTAGLRRKNKIKEEIERYSIIRAVTAVERADVCIIVIDATEGVTEQD 284 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVS-DKLNLLQDLRTKAIKN----LPQIGDIYINTISG 358 +I + G +++A+NKWD + D + + T+ I++ +P I+I+ SG Sbjct: 285 AKIAGIAHDRGKGIIIAVNKWDAIEKDDKTIYR--HTEKIRDILSFMPYAEIIFISAKSG 342 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 + + + + V+E N + R+ T LN + + PP+ + R+ Y TQ+ Sbjct: 343 QRLNKIFETIDVVIENNSM---RVATGVLNEIVTEAVAMQQPPSDKGKRLRIYYTTQVSV 399 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 PP+F+IF + SY RYL NR+R F G +R + K Sbjct: 400 KPPTFVIFVNDKQLMHFSYTRYLENRIRDTFGFRGTALRFIIRERK 445 >gi|329571714|gb|EGG53395.1| ribosome biogenesis GTPase Der [Enterococcus faecalis TX1467] Length = 436 Score = 236 bits (602), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 139/457 (30%), Positives = 234/457 (51%), Gaps = 31/457 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAIVG PNVGKST+FNR+ +++++V + PG+TRDR+Y G F+I+DT G D Sbjct: 5 TIAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYTTGEWLGREFSIIDTGGF-DL 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + Q+ Q E+AI+EA +I+F+ + GIT D + L + N P+I+ NK+D Sbjct: 64 GDEPFMDQIKHQAEIAIDEADVIIFVASGREGITDADELVAKILYRSNKPVILAVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + YE Y+L + +S H LG ++ K F PN E E+ Sbjct: 124 PEMRNDIYEFYALGLGDPFPVSGSHGLGIGDVLDEAVKHF----PNTSEEEDEDT----- 174 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 ++ +++GRPNVGKS+LIN +LG +R++ G TRD++ Sbjct: 175 --------------------IKFSLIGRPNVGKSSLINAILGEDRVIVSDIEGTTRDAID 214 Query: 244 ISW-NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + + + + DTAGMRK ++ ES E+ +V ++M+++ + +++L+A +Q Sbjct: 215 TYFESEEGQKFLMIDTAGMRKRGKVYESTEKYSVMRAMRAIERSDIVLMVLNAEEGIREQ 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D R+ G +++ +NKWD V N ++D + + I +S T + Sbjct: 275 DKRVAGYAHEAGRGIIIVVNKWDTVKKDTNTMRDFEAEIRDEFQYLDYAPIIFVSALTKQ 334 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 L+ L + ++ RI ++ LN + NP PT + ++ Y TQ+ PP+ Sbjct: 335 RLNKLPELIETVSMNQNLRIPSALLNDVVMDAVAINPTPTDKGKRLKIFYATQVAVKPPT 394 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 F+IF + SY R+L N++R F+ G PI++ Sbjct: 395 FVIFVNEEELMHFSYARFLENQIRKAFTFEGTPIKII 431 >gi|307700914|ref|ZP_07637939.1| ribosome-associated GTPase EngA [Mobiluncus mulieris FB024-16] gi|307613909|gb|EFN93153.1| ribosome-associated GTPase EngA [Mobiluncus mulieris FB024-16] Length = 524 Score = 236 bits (602), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 151/462 (32%), Positives = 239/462 (51%), Gaps = 38/462 (8%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AIVG PNVGKSTL NR++ +++AVV + PG+TRDR+ A NG F+++DT G G Sbjct: 90 TVAIVGRPNVGKSTLVNRILGRRVAVVLDEPGVTRDRVIYDADWNGRDFHLIDTGGWDVG 149 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + K + Q E+AI A + LF++D+ G T D A+ LR P+I+V+NK+D+ Sbjct: 150 VK-GLDKAVATQAEIAIEMADVSLFVVDANVGATATDEAMMRLLRASKKPVILVANKVDS 208 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 A+ + +++L E ISA H G EL V+ P +E Sbjct: 209 ERAEADASGLWNLGLGEPYPISALHGRGVGELLDVLLDAL----PTVAAHRVER------ 258 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 P + S P R+A+VGRPNVGKS+L+N L G R + G TRD V Sbjct: 259 -PAD-------------STP-RVALVGRPNVGKSSLLNSLAGSGRSVVSDTPGTTRDPVD 303 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 DTAG+++ + T + +V ++ ++ + E +VLLD P +QD Sbjct: 304 EVLELDGKEWVFVDTAGIKRRIKQTVGADYYSVLRAQSAIESAEVALVLLDGGEPLSEQD 363 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSD----KLNLLQDLRTKAIKNLPQIGDIYINTISGR 359 +++V+ V +G A+VL NKWD+V + +L Q+L + P+I I+ + Sbjct: 364 VKVVNLVVESGRALVLVNNKWDLVDEYRQQELKREQELDLAHVSWAPKI------NIAAK 417 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 TG + ++ ++ + W TRI+TS LN++L + +P P + R+ Y TQ Sbjct: 418 TGWHTNRIVRALEAALEGWTTRISTSRLNTFLGELVAAHPHPLRGGKQPRILYATQAGVC 477 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 PP F++F T + Y+R++ RLR F G P+++ + Sbjct: 478 PPRFVLFTT--GFLDPQYRRFIERRLRETFGFVGTPVQIGVR 517 >gi|94676730|ref|YP_588490.1| GTP-binding protein EngA [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|166224308|sp|Q1LU74|DER_BAUCH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|94219880|gb|ABF14039.1| GTP-binding protein EngA [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 472 Score = 236 bits (602), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 160/469 (34%), Positives = 241/469 (51%), Gaps = 20/469 (4%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI IA+VG PNVGKSTLFN+L A+V ++ G+TRDR YG A F ++DT GI Sbjct: 1 MIPIIALVGRPNVGKSTLFNKLTHTNDAIVADYSGLTRDRKYGHAKWKNYNFIVIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 K +A + Q+ LAI EA +I F++D+ G+ D +I +LRK P I+ NK Sbjct: 61 GISKK-GLAIHIIKQSLLAIKEADVIFFVVDAITGLMIEDQSIAKYLRKLQKPTFIIINK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D + + Y+++ +I I+A G + L +F L +I+NN Sbjct: 120 IDGIDITQVKLQFYAINIGQIFPIAALQGRGINILLKAVF-----------LSLIQNNI- 167 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 N +E + + P+++A+VG NVGKSTL N LG R++ G TRD Sbjct: 168 ---PLTNNSFTESTKYIDQLLMPIKLAIVGSSNVGKSTLANSFLGEERVVVFDMPGTTRD 224 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S I + DTAG+RK S+IT+ E+ + K++QS+ +++LDA Sbjct: 225 STYIPMIRAEREYVLIDTAGLRKRSKITDIAEKLSTVKTLQSIEESNVVLLVLDAHKGIS 284 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVS-DKLNLLQDLRTKAIKNLPQIGDIYINTISGR 359 QDL ++ + ++G A V+ +NKWD +S ++ N ++D T A + L I I+ IS Sbjct: 285 DQDLSLLSLIIDSGRAFVIVVNKWDNLSIERRNSIKD--TLAYR-LSFINFARIHFISAL 341 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 G +D + SV E RI+T+ L L ++ PP I +LKY + Sbjct: 342 YGTNIDQIFQSVNEAYHCSTKRISTALLTKILHIAIKEHQPPIISGYRVKLKYAHYGGYN 401 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYI 468 PP +I ++P SYKRYL N R + + G PIR+ F NP+I Sbjct: 402 PPIVVIHGNKATELPVSYKRYLSNFFRHSLQIMGTPIRIQFNEPANPFI 450 >gi|270308559|ref|YP_003330617.1| GTP-binding protein [Dehalococcoides sp. VS] gi|270154451|gb|ACZ62289.1| GTP-binding protein [Dehalococcoides sp. VS] Length = 441 Score = 236 bits (602), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 150/462 (32%), Positives = 242/462 (52%), Gaps = 37/462 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG NVGKSTL NRL K +A+ + PG TRDRL+ +VDT G+ Sbjct: 8 IAIVGRQNVGKSTLLNRLAHKNLAITEDLPGTTRDRLFTTVSWLDRKLIMVDTGGLDPDI 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I +Q+N Q LAI EA L+L ++D K G+ D+ + +R+ +I+V+NK D Sbjct: 68 ESVIGQQVNIQISLAIKEADLVLLVVDVKTGLVTSDYEMADIIRRTGKSVILVANKADNL 127 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 ++ E YSL F E ISA H G S+L + ++ P+ P+ S Sbjct: 128 KMGQDAAEFYSLGFGEPSVISAFHGNGISDLMDRVL----EELPDQPIA----------S 173 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P+E+ +SVK +A+VGR NVGKSTL+N LG R + + G TRD++ Sbjct: 174 PEED------NSVK-------LALVGRANVGKSTLLNTFLGQERSIVSNIPGTTRDAIDT 220 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 ++ + + DTAG+R+ ++ +E+ +V +++++V + ++++D QD Sbjct: 221 PLDFNGTNVLLIDTAGIRRRGKVESGVEKYSVLRALKAVDRADVVLLVMDTEELVTAQDT 280 Query: 305 RIVDSVFNTGHAVVLALNKWDM--VSDKLNLLQDL--RTKAIKNLPQIGDIYINTISGRT 360 I V +T +++ LNKWD+ DK + Q + R K + P I +SG+T Sbjct: 281 HIAGYVRDTAKGIIIILNKWDLGKGQDKAEVTQTIQSRFKFLDYAP------ILFVSGKT 334 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G +D ++ L++ + RI T+ +NS + + + PP ++ Y TQ + +P Sbjct: 335 GRDVDTIIPMALKVQEERSKRIPTAKVNSVVTEALSAHTPPRQGKTQLKIFYATQAEINP 394 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 PSF+ F P + SY+R++ NRLR +F G PIR+ F++ Sbjct: 395 PSFVFFVNNPKLVHFSYERFIENRLRESFGFFGTPIRLTFKA 436 >gi|291320725|ref|YP_003515990.1| GTP binding protein EngA [Mycoplasma agalactiae] gi|290753061|emb|CBH41037.1| GTP binding protein engA [Mycoplasma agalactiae] Length = 436 Score = 236 bits (602), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 148/465 (31%), Positives = 246/465 (52%), Gaps = 35/465 (7%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 IAI+G PNVGKSTLFNRLV K+ ++ + PG+TRDRLY NG N++DT GI Sbjct: 5 VIAIIGKPNVGKSTLFNRLVGKRSSITFDRPGVTRDRLYESFTWNGKEINVIDTGGIQIE 64 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 K Q+ Q ++AI EA++++F++D +A IT D I S L+K PII+V+NK+D Sbjct: 65 KK-DFQDQILIQAKIAIEEANVVIFIVDGQAAITSDDKMIYSMLQKSGKPIIVVANKLDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 I++ + Y YSL + ISA H G ++ KY N + Sbjct: 124 -ISKFD-YGWYSLGADHVFRISALHGNGIGDVLDQCL-----KYLNFDTD---------- 166 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 N+S +++++G+PN GKS+L+N + NR + +G TRDSV Sbjct: 167 ---------------NVSPYFKLSIIGQPNSGKSSLLNAITHENRSIVSDIAGTTRDSVK 211 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + H IEI DTAG+ + S+I + +E +K++M S+ + +IVL+D+T D Sbjct: 212 SVVELRGHKIEIIDTAGITRKSKIDDIVEHLALKRAMSSLDESDLSIVLIDSTRELAHFD 271 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 RI+ +++ +NKWD+++ + + + R K + + + IS +TG Sbjct: 272 ARIIGYALENNKPIIICVNKWDLINKTQDTMNEYRKKLKNRFHFVPWVPVEFISAKTGSR 331 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNP-PPTIFNRYNRLKYITQIQSSPPS 422 +D L+ VL++ + + I S L + ++++QL P PP R N + + + ++ P+ Sbjct: 332 IDKLIDIVLKVKENLEREIKPSVLTNLIRESQLIQPAPPYNGGRLN-IYFARKTENKIPT 390 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 F+ F + SY+R+L ++R N +G PI + F++ N + Sbjct: 391 FIFFVNNKKFVHFSYQRFLEKQIRQNIEYTGCPINIIFKNKSNEF 435 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/122 (31%), Positives = 65/122 (53%), Gaps = 2/122 (1%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA- 61 + ++I+G PN GKS+L N + + ++V + G TRD + + G I+DTAGI Sbjct: 172 FKLSIIGQPNSGKSSLLNAITHENRSIVSDIAGTTRDSVKSVVELRGHKIEIIDTAGITR 231 Query: 62 DGKNCSIAKQMNDQTEL-AINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 K I + + + + +++E+ L + LIDS + +D I + + N PIII NK Sbjct: 232 KSKIDDIVEHLALKRAMSSLDESDLSIVLIDSTRELAHFDARIIGYALENNKPIIICVNK 291 Query: 121 MD 122 D Sbjct: 292 WD 293 >gi|187931320|ref|YP_001891304.1| GTP-binding protein EngA [Francisella tularensis subsp. mediasiatica FSC147] gi|238691534|sp|B2SF94|DER_FRATM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|187712229|gb|ACD30526.1| GTP-binding protein [Francisella tularensis subsp. mediasiatica FSC147] Length = 465 Score = 236 bits (602), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 158/472 (33%), Positives = 248/472 (52%), Gaps = 25/472 (5%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M + +AIVG NVGKSTLFN L A+V + G+TRDR YGQA + + + +VDT GI Sbjct: 1 MSFLVAIVGRANVGKSTLFNVLTNSHDALVFDFEGVTRDRQYGQAKYDDLDYLVVDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 +D K+ + M Q+++AI+EA+L+ F++D ++G+T D + S LR+K+ +++V NK Sbjct: 61 SD-KDVGFDEFMAKQSQIAIDEANLVFFVVDGRSGLTTGDEYVASLLRQKDKKVVVVVNK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D + E YS F ++ ISA H T +L K+ PL Sbjct: 120 VDGTDEEAAMAEFYSFGFDKVFAISAAHRRNTQKL--------VDKFLKKPL-------- 163 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 NE T E K ++ + +++GRPNVGKSTL NR+LG +R++ G T D Sbjct: 164 NEYYQDYTQTQEHKEQQRH---GIHFSLIGRPNVGKSTLTNRMLGEDRVVVFDMPGTTID 220 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 SVSI + I DTAG+RK ++ ++LE+ +V K++Q+++ + ++DA Sbjct: 221 SVSIPFERHGQKYTIVDTAGVRKRGKVKQTLEKFSVIKTLQAIQDSNVVVAVVDARQGIS 280 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVS--DKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 QDL ++ G A+VLA+NKWD ++ D++ + QDL+ K L DI+ IS Sbjct: 281 DQDLSLIHFAIKNGRALVLAVNKWDGMTEEDRIQVKQDLKRKLF-FLQDYVDIHF--ISA 337 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 G + + S+ +ITT+ +Q + P + +LKY Sbjct: 338 LHGTNVGHVFESIDTAYACANKKITTADATCLMQLAVEAHSLPMVGKFRIKLKYAHVGGH 397 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I +++P SYKRYL N R G PI F+ S+NP+ + Sbjct: 398 NPPVIVIHGNQVSRLPNSYKRYLENFFREALDFRGTPIVFEFKQSENPFADR 449 >gi|270156684|ref|ZP_06185341.1| putative GTP-binding protein EngA [Legionella longbeachae D-4968] gi|289164869|ref|YP_003455007.1| GTPase involved in ribosome synthesis and maintenance [Legionella longbeachae NSW150] gi|269988709|gb|EEZ94963.1| putative GTP-binding protein EngA [Legionella longbeachae D-4968] gi|288858042|emb|CBJ11902.1| GTPase involved in ribosome synthesis and maintenance [Legionella longbeachae NSW150] Length = 466 Score = 236 bits (602), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 158/473 (33%), Positives = 247/473 (52%), Gaps = 37/473 (7%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI IA+VG PNVGKSTLFN+L K + A+V ++PG+TRDR YGQA + + +VDT GI Sbjct: 1 MIPVIALVGRPNVGKSTLFNKLTKTQDALVADYPGLTRDRQYGQAQHDDKHYIVVDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + ++ M+ Q+E+A++EA ++LFL+D + G+T D I + LRK N + +V NK Sbjct: 61 GI-DDIAVDSLMSKQSEIALHEADIVLFLVDGRDGLTGIDEKIATNLRKLNKKVHLVVNK 119 Query: 121 ---MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 +D IA +F SL I IS+ H G L I F + Sbjct: 120 TEGLDDDIACADF---QSLGITSIHSISSSHGTGIRTLLDDILSPF-----------VPQ 165 Query: 178 NKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGI 237 ++ EE ++IA GRPNVGKSTLINR+LG R++ G Sbjct: 166 CEKVEE-----------------MHAIKIAFAGRPNVGKSTLINRILGEERVVVYDMPGT 208 Query: 238 TRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATI 297 TRDS++I + N + DTAG+R+ SRI E +E+ +V K+++++ + LLDA Sbjct: 209 TRDSIAIPFARDNQQYVLIDTAGVRRKSRIDEKIEKFSVIKTLKAIEESNVCLQLLDANE 268 Query: 298 PFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTIS 357 QD+ ++ + +G A+V+A+NKWD + ++ + ++++ + L I IS Sbjct: 269 GITDQDMNLLGFIIESGKALVIAVNKWDGLDEEHK--EKIKSELSRRLHFANFAKIRFIS 326 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 G G+ +L + E +T L LQ ++ PP + R +L+Y Sbjct: 327 ALHGSGVGNLFKDINEAYTSAIQSFSTPKLTRLLQDLSTKHTPPCVNGRRIKLRYAHLGG 386 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I +P+SYKRYL N + L G P+++ F+ NP+ +K Sbjct: 387 HNPPVIVIHGNQLADLPDSYKRYLNNEFIRHLGLVGTPLKLEFKGGMNPFAEK 439 >gi|241896284|ref|ZP_04783580.1| GTP-binding protein EngA [Weissella paramesenteroides ATCC 33313] gi|241870525|gb|EER74276.1| GTP-binding protein EngA [Weissella paramesenteroides ATCC 33313] Length = 436 Score = 236 bits (602), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 136/461 (29%), Positives = 238/461 (51%), Gaps = 31/461 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKST+FNR+ ++++V + PG+TRDR+Y +A F ++DT GI D Sbjct: 6 VAVVGRPNVGKSTIFNRIAGDRISIVEDTPGVTRDRIYTRAEWLTHEFRLIDTGGI-DMG 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + Q+ Q E+AI+EA +I+F++ ++ G+T D + L + P+++ NK+D Sbjct: 65 DEPFMSQIVQQAEIAIDEADVIVFMVSAREGLTEADERVAKILYRSKKPVVLAVNKVDNI 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + YE Y+L F + IS H G +L Q N P IE + ++ Sbjct: 125 ELRSEIYEFYALGFGDPYPISGAHGTGLGDL-------LDQVVANFP--EIEAQEEDD-- 173 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 +R + +GRPNVGKS+L+N +LG R++ SG TRD++ Sbjct: 174 ------------------AVRFSFIGRPNVGKSSLVNAILGEERVIVSDISGTTRDAIDT 215 Query: 245 SW-NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + + + DTAG+RK ++ ES E+ +V ++M+++ +V+L+A +QD Sbjct: 216 RFTSAYGDEFVMVDTAGIRKRGKVYESTEKYSVMRAMRAIDDSNVVLVVLNAEEGIREQD 275 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 + G AV++ +NKWD + + + D + + + I +S T + Sbjct: 276 KHVAGYAHEAGRAVIIVVNKWDTLEKDNHTMADFENQIRQEFQYLSYAPIVFVSAMTKQR 335 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 L+ L + ++N + RI ++ LN + NP T+ + R+ Y TQ+ PP+F Sbjct: 336 LNKLPALIKQVNDNHQKRIQSATLNEVIMDALALNPTSTVNGKRLRVYYATQVAIQPPTF 395 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 ++F P + SY+R+L N++R +F +G PI + ++ K Sbjct: 396 VVFVNDPELMHFSYERFLENQIRKSFDFTGTPIHLIKRARK 436 >gi|160915095|ref|ZP_02077308.1| hypothetical protein EUBDOL_01103 [Eubacterium dolichum DSM 3991] gi|158432894|gb|EDP11183.1| hypothetical protein EUBDOL_01103 [Eubacterium dolichum DSM 3991] Length = 436 Score = 236 bits (602), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 134/462 (29%), Positives = 233/462 (50%), Gaps = 30/462 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 +AIVG PNVGKST+FNR++ ++ ++V + PG+TRDR+YG+A F ++DT GI Sbjct: 5 VVAIVGRPNVGKSTIFNRIIGERKSIVEDTPGVTRDRIYGKAEWLTKEFRLIDTGGI-QL 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 ++ +++ Q E+AI EA I+F++ + G+T D I L+K N II+ NK+D Sbjct: 64 EDQDFQQEIQMQVEIAIEEADAIVFVVSGREGVTRDDEYIARLLQKTNKKIILAVNKIDD 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 Q + YE Y L + + +S H +G ++ I F +K N Sbjct: 124 ESLQPSIYEFYQLGVGDPIAVSGSHGIGIGDILDEIVHSFPKKAFNE------------- 170 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 EG + R ++GRPNVGKS+L+N +L +R++ + G TRD++ Sbjct: 171 -------YEGMT---------RFCLIGRPNVGKSSLVNAILDQDRVIVSNIEGTTRDAID 214 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + + + DTAG+R+ ++ E++E+ +V ++M ++ + +V++D +QD Sbjct: 215 TPFTREGKDYVVIDTAGIRRRGKVYENIEKYSVLRAMSAIERSDVVLVVIDGETGIREQD 274 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 + G V++ NKWD V + + + + + I +S + Sbjct: 275 KHVAGYAHEAGKGVIIVYNKWDAVEKDERTMVKIEKEIYAHFLYLNYAPIVFVSALKKQR 334 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 + L+ + E++ RI T+ LN + QL PPPT + ++ Y +Q+ ++PP+ Sbjct: 335 IHTLLPMIDEVHDYSLLRIPTNVLNEVIMDAQLMTPPPTHKGQRLKIYYASQVSTAPPTL 394 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 ++F P + SY RYL NRLR F G +R+ + N Sbjct: 395 VLFVNDPELLHFSYSRYLENRLREAFGFKGTTLRIIAREKNN 436 >gi|241758625|ref|ZP_04756739.1| ribosome-associated GTPase EngA [Neisseria flavescens SK114] gi|241321136|gb|EER57332.1| ribosome-associated GTPase EngA [Neisseria flavescens SK114] Length = 485 Score = 236 bits (602), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 148/472 (31%), Positives = 227/472 (48%), Gaps = 40/472 (8%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M TIA+VG PNVGKSTLFNRL + K A+V + PG+TRDR YG I + ++DT G Sbjct: 1 MKPTIALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKIGSKPYLVIDTGGF 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + I +M QT A++EA ++FL+D + G+TP D I LR+ P+ + NK Sbjct: 61 EPVVDSGILHEMAKQTLQAVDEADAVVFLVDGRTGLTPQDKIIADRLRQSPRPVYLAVNK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKY-----PNHPLEMI 175 + E Y L + IS H G L I + F + HP+ Sbjct: 121 GEGGNRAVLAAEFYELALGDPYVISGAHGDGVYYLIEDILETFPEPEKEEEEAKHPV--- 177 Query: 176 ENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQS 235 AV+GRPNVGKSTL+N +LG R++ + + Sbjct: 178 ------------------------------FAVIGRPNVGKSTLVNAILGEERVIAFNMA 207 Query: 236 GITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDA 295 G TRDS+ I + + P I DTAG+R+ ++ E++E+ +V K+MQ+V +++LDA Sbjct: 208 GTTRDSIHIDFEREGKPFTIIDTAGVRRRGKVDEAVEKFSVIKAMQAVEAANVAVLVLDA 267 Query: 296 TIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINT 355 QD I G A+V+A+NKWD +S++ + ++ + L + + Sbjct: 268 QQDIADQDATIAGFALEAGRALVVAVNKWDGISEERR--EQVKRDINRKLYFLDFAKFHF 325 Query: 356 ISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQ 415 IS G+D L S+ ++ T + LQ + PP +++Y Q Sbjct: 326 ISALKERGIDGLFESIQAAYNAAMIKMPTPKITRVLQSAIERQQPPRAGLVRPKMRYAHQ 385 Query: 416 IQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 +PP ++ + I +SY RYL R F+L G P+R+ + S+NPY Sbjct: 386 GGMNPPVIVVHGNSLHAISDSYTRYLTQTFRKAFNLQGTPLRIQYNVSENPY 437 >gi|54113771|gb|AAV29519.1| NT02FT0401 [synthetic construct] Length = 465 Score = 236 bits (602), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 156/472 (33%), Positives = 247/472 (52%), Gaps = 25/472 (5%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +AIVG NVGKSTLFN L A+V + G+TRDR YGQA + + + +VDT GI Sbjct: 1 MSVLVAIVGRANVGKSTLFNVLTNSYDALVFDFEGVTRDRQYGQAKYDDLDYLVVDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 +D K+ + M Q+++AI+EA+L+ F++D ++G+T D + S LR+K+ +++V NK Sbjct: 61 SD-KDVGFDEFMAKQSQIAIDEANLVFFVVDGRSGLTTGDEYVASLLRQKDKKVVVVVNK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D + E YS F ++ ISA H T +L F +K N + + Sbjct: 120 VDGTDEEAAMAEFYSFGFDKVFAISAAHRRNTQKL----VDKFLKKTLNEYYQDYTQTQE 175 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 ++E + I +++GRPNVGKSTL NR+LG +R++ G T D Sbjct: 176 HKEQQRHGI---------------HFSLIGRPNVGKSTLTNRMLGEDRVVVFDMPGTTID 220 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 SVSI + I DTAG+RK ++ ++LE+ +V K++Q+++ + ++DA Sbjct: 221 SVSIPFERHGQKYTIVDTAGVRKRGKVKQTLEKFSVIKTLQAIQDSNVVVAVVDARQGIS 280 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVS--DKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 QDL ++ G A+VLA+NKWD ++ D++ + QDL+ K L DI+ IS Sbjct: 281 DQDLSLIHFAIKNGRALVLAVNKWDGMTEEDRIQVKQDLKRKLF-FLQDYVDIHF--ISA 337 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 G + + S+ +ITT+ +Q + PP + +LKY Sbjct: 338 LHGTNVGHVFESIDTAYACASKKITTADATRLMQLAVEAHSPPMVGKFRIKLKYAHVGGH 397 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I +++P SYKRYL N R G PI F+ S+NP+ + Sbjct: 398 NPPVIVIHGNQVSRLPNSYKRYLENFFREALDFRGTPIVFEFKQSENPFADR 449 >gi|306818602|ref|ZP_07452325.1| ribosome-associated GTPase EngA [Mobiluncus mulieris ATCC 35239] gi|304648775|gb|EFM46077.1| ribosome-associated GTPase EngA [Mobiluncus mulieris ATCC 35239] Length = 526 Score = 236 bits (602), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 148/462 (32%), Positives = 237/462 (51%), Gaps = 38/462 (8%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AIVG PNVGKSTL NR++ +++AVV + PG+TRDR+ A NG F+++DT G G Sbjct: 92 TVAIVGRPNVGKSTLVNRILGRRVAVVLDEPGVTRDRVIYDADWNGRDFHLIDTGGWDVG 151 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + K + Q E+AI A + LF++D+ G T D A+ LR P+I+V+NK+D+ Sbjct: 152 VK-GLDKAVATQAEIAIEMADVSLFVVDANVGATATDEAMMRLLRASKKPVILVANKVDS 210 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 A+ + +++L E ISA H G EL V+ P+ + + Sbjct: 211 ERAEADASGLWNLGLGEPYPISALHGRGVGELLDVLLDALP------PVAAHRVERPADS 264 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 +P R+A+VGRPNVGKS+L+N L G R + G TRD V Sbjct: 265 TP-------------------RVALVGRPNVGKSSLLNSLAGSGRSVVSDTPGTTRDPVD 305 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 DTAG+++ + T + +V ++ ++ + E +VLLD P +QD Sbjct: 306 EVLELDGKEWVFVDTAGIKRRIKQTVGADYYSVLRAQSAIESAEVALVLLDGGEPLSEQD 365 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSD----KLNLLQDLRTKAIKNLPQIGDIYINTISGR 359 +++V+ V +G A+VL NKWD+V + +L Q+L + P+I I+ + Sbjct: 366 VKVVNLVVESGRALVLVNNKWDLVDEYRQQELKREQELDLAHVSWAPKI------NIAAK 419 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 TG + ++ ++ + W TRI TS LN++L + +P P + R+ Y TQ Sbjct: 420 TGWHTNRIVRALEAALEGWTTRIGTSRLNTFLGELVAAHPHPLRGGKQPRILYATQAGVC 479 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 PP F++F T + Y+R++ RLR F G P+++ + Sbjct: 480 PPRFVLFTT--GFLDPQYRRFIERRLRETFGFVGTPVQIGVR 519 >gi|227875339|ref|ZP_03993481.1| GTP-binding protein EngA [Mobiluncus mulieris ATCC 35243] gi|227844244|gb|EEJ54411.1| GTP-binding protein EngA [Mobiluncus mulieris ATCC 35243] Length = 517 Score = 236 bits (601), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 148/462 (32%), Positives = 237/462 (51%), Gaps = 38/462 (8%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AIVG PNVGKSTL NR++ +++AVV + PG+TRDR+ A NG F+++DT G G Sbjct: 83 TVAIVGRPNVGKSTLVNRILGRRVAVVLDEPGVTRDRVIYDADWNGRDFHLIDTGGWDVG 142 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + K + Q E+AI A + LF++D+ G T D A+ LR P+I+V+NK+D+ Sbjct: 143 VK-GLDKAVATQAEIAIEMADVSLFVVDANVGATATDEAMMRLLRASKKPVILVANKVDS 201 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 A+ + +++L E ISA H G EL V+ P+ + + Sbjct: 202 ERAEADASGLWNLGLGEPYPISALHGRGVGELLDVLLDALP------PVAAHRVERPADS 255 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 +P R+A+VGRPNVGKS+L+N L G R + G TRD V Sbjct: 256 TP-------------------RVALVGRPNVGKSSLLNSLAGSGRSVVSDTPGTTRDPVD 296 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 DTAG+++ + T + +V ++ ++ + E +VLLD P +QD Sbjct: 297 EVLELDGKEWVFVDTAGIKRRIKQTVGADYYSVLRAQSAIESAEVALVLLDGGEPLSEQD 356 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSD----KLNLLQDLRTKAIKNLPQIGDIYINTISGR 359 +++V+ V +G A+VL NKWD+V + +L Q+L + P+I I+ + Sbjct: 357 VKVVNLVVESGRALVLVNNKWDLVDEYRQQELKREQELDLAHVSWAPKI------NIAAK 410 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 TG + ++ ++ + W TRI TS LN++L + +P P + R+ Y TQ Sbjct: 411 TGWHTNRIVRALEAALEGWTTRIGTSRLNTFLGELVAAHPHPLRGGKQPRILYATQAGVC 470 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 PP F++F T + Y+R++ RLR F G P+++ + Sbjct: 471 PPRFVLFTT--GFLDPQYRRFIERRLRETFGFVGTPVQIGVR 510 >gi|302386477|ref|YP_003822299.1| ribosome-associated GTPase EngA [Clostridium saccharolyticum WM1] gi|302197105|gb|ADL04676.1| ribosome-associated GTPase EngA [Clostridium saccharolyticum WM1] Length = 442 Score = 236 bits (601), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 146/463 (31%), Positives = 238/463 (51%), Gaps = 37/463 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFN L +++V + PG+TRDR+Y + F ++DT GI Sbjct: 6 VAIVGRPNVGKSTLFNVLAGDTISIVKDTPGVTRDRIYADCTWLDMNFTLIDTGGIEPDS 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 + I QM +Q E+AI A +I+F++D + G+ D + LRK PI++ NK+D+ Sbjct: 66 SDIILSQMREQAEIAIATADVIIFIVDVRQGLVDADSKVADMLRKSKKPIVLAVNKVDSF 125 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + YE Y+L + + +SA LG +L + K F ++ E + ++ Sbjct: 126 QKFGNDVYEFYNLGIGDPIPVSAASRLGLGDLLDEVAKHF---------DLSETEEEEDD 176 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 P RIA+VG+PNVGKS++IN+LLG NR++ + +G TRD+V Sbjct: 177 RP-------------------RIAIVGKPNVGKSSIINQLLGENRVIVSNIAGTTRDAVD 217 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + DTAG+R+ S+I E LE+ ++ +++ +V + +V++DA +QD Sbjct: 218 TEIVHEGTEYVFIDTAGLRRKSKIKEELERYSIIRTVTAVERADVVVVVIDAEEGVTEQD 277 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKN----LPQIGDIYINTISGR 359 +I G +V+A+NKWD + + + T IKN +P ++ IS + Sbjct: 278 AKIAGIAHERGKGIVVAVNKWDAIEKNDKTIYEY-TNKIKNTLSFMPYAEFVF---ISAK 333 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 TG ++ L + + + RI T LN + + PP+ + RL YITQ+ Sbjct: 334 TGLRMNKLFEVIDMVRENQTLRIATGILNEIMTEAVALQQPPSDKGKRLRLYYITQVAVK 393 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 PP+F+IF SY RYL N++R F G ++ ++ Sbjct: 394 PPTFVIFVNDKELTHFSYTRYLENKIREAFGFRGTSLKFIYRE 436 >gi|297565398|ref|YP_003684370.1| ribosome-associated GTPase EngA [Meiothermus silvanus DSM 9946] gi|296849847|gb|ADH62862.1| ribosome-associated GTPase EngA [Meiothermus silvanus DSM 9946] Length = 437 Score = 236 bits (601), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 141/472 (29%), Positives = 244/472 (51%), Gaps = 49/472 (10%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 +Y + IVG PNVGKS+LFNRL+ K+ AVV + PG+TRD F +VDT G+ Sbjct: 1 MYKVVIVGRPNVGKSSLFNRLLGKRHAVVADQPGVTRDLKEATVESERGRFKLVDTGGLW 60 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 G +++ ++ E A+ +A L+LF +D +A I+P D + FLR+K+ +++V+ K+ Sbjct: 61 SGDVWE--QKIKEKVEAALEDADLVLFTVDGRADISPADLEVADFLRRKHSNVLLVATKV 118 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D + ++++L F E V S+ H G EL I+ K P Sbjct: 119 DDPKHENYLGDLWALGFGEPVPTSSSHARGLDELEDKIW----SKLP------------- 161 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 + EG+S + + P++IA+VGRPN GKS+L+N +LG R++ + G TRDS Sbjct: 162 -------VRQEGESEPEVV--PIKIAIVGRPNAGKSSLLNAILGEERVIVSEEPGTTRDS 212 Query: 242 VSISWNWKNHPIEIFDTAGMRK-PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 + + +++ ++ DTAG+RK P + E L + ++ +S+ + +++D F Sbjct: 213 IDVEFDYGGTLFQLVDTAGIRKRPETLVEEL---AIARAHKSIEEADIVFLVIDPA-NFG 268 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 ++L++ + G V+L + KWD+V K + +R + + L +G + +S T Sbjct: 269 DRELKLANEALEAGKPVILTVTKWDLV--KKDDQPKVRREISERLAHLGHLPRVYVSSLT 326 Query: 361 GEGLDDLMVSVLEINKLWKTRITTS----YLNSWLQKTQLQN---PPPTIFNRYNRLKYI 413 G L L + L + R T+ YL++W K L N P IF ++ Sbjct: 327 GLNLHKLFTEATRLYALARERFETAELNRYLSAWTAKVALPNFKGKPLKIF-------FV 379 Query: 414 TQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 TQ + +PP+F+ F +P + +++ YL NR+ + L+ +P RM F+ + Sbjct: 380 TQPEVAPPTFVFFVNYPEFVTRAFEGYLRNRIGEDLGLAEVPFRMVFKGRRG 431 >gi|149923268|ref|ZP_01911678.1| GTP-binding protein EngA [Plesiocystis pacifica SIR-1] gi|149815865|gb|EDM75385.1| GTP-binding protein EngA [Plesiocystis pacifica SIR-1] Length = 487 Score = 236 bits (601), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 149/468 (31%), Positives = 237/468 (50%), Gaps = 37/468 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKSTLFNRLV ++ A+V + PG+TRDRLYG A G F +VDT G+ Sbjct: 30 VAIIGRPNVGKSTLFNRLVGRREAIVEDRPGVTRDRLYGVASWEGRHFLVVDTGGVDPSL 89 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + + Q E+A+ EA LILF++D+K G T D I + LR+ P+++ +NK D+ Sbjct: 90 DTGLPGHIRSQAEVAMEEADLILFVVDAKEGATAVDIDIAAELRRSGKPVMLAANKADSP 149 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + ++ L E+ +SA H G + + LE + + + Sbjct: 150 SRELAAAAMHELGLGEVHAVSAAHGRGVGDFCDAL------------LERLPAATEAQPT 197 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P I RIA +GRPN GKSTL+N LL R++ G TRD V + Sbjct: 198 P--------------IPPGTRIAFIGRPNAGKSTLVNTLLEEQRVIVSDTPGTTRDPVYL 243 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + +K+ + + DTAG+R+ +I ++E+ KS++++ + ++++DA+ QD Sbjct: 244 PFRYKDRDLVLTDTAGLRRRKQIARAMEKLAAIKSIRTMERTQVVVLVIDASQGVTDQDQ 303 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 R+ F G VV+AL+KWD++ L +D + L + + YI S GEG Sbjct: 304 RLARMAFERGKGVVVALHKWDLIRRDGKLAKDTLAYTQEALGFLENPYI-IKSSVIGEGR 362 Query: 365 D----------DLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYIT 414 D +L+ + L RI TS LN LQ + PP + RL + T Sbjct: 363 DEGKGRAFNLAELLDACLSTAAALGKRIPTSALNEELQGAVADHSPPMYRAKSVRLYFAT 422 Query: 415 QIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 Q ++ PP +I + +Y+RYL+ R+R + L G+P+R+ + Sbjct: 423 QAENEPPLIVISANHGRCLSPAYERYLLRRIRRRWHLRGVPVRLVVRG 470 >gi|167754612|ref|ZP_02426739.1| hypothetical protein CLORAM_00114 [Clostridium ramosum DSM 1402] gi|237733753|ref|ZP_04564234.1| GTP-binding protein engA [Mollicutes bacterium D7] gi|167705444|gb|EDS20023.1| hypothetical protein CLORAM_00114 [Clostridium ramosum DSM 1402] gi|229383091|gb|EEO33182.1| GTP-binding protein engA [Coprobacillus sp. D7] Length = 434 Score = 236 bits (601), Expect = 9e-60, Method: Compositional matrix adjust. Identities = 137/458 (29%), Positives = 228/458 (49%), Gaps = 30/458 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +AIVG NVGKST+FNR+V +++++V + G+TRDR+Y A F ++DT GI Sbjct: 1 MAGVVAIVGRANVGKSTIFNRIVGERISIVEDVAGVTRDRIYATATWLTKEFRLIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + ++ S Q+ Q E+AI EA LI+F+++ + GIT D + L+K + P+++ NK Sbjct: 61 -ELQDASFTAQIKMQAEIAIEEADLIVFVVNGREGITREDEYVARLLQKTSKPVLLAVNK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D + + YE Y+L + + +S H +G +L I K + I Sbjct: 120 IDDNAFKDDIYEFYNLGIGDPIAVSGSHGIGIGDLLDEIIKNLDFVEEEFDEDEI----- 174 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 R +++GRPNVGKS+L N +LG R++ + G TRD Sbjct: 175 ------------------------RFSIIGRPNVGKSSLTNAILGEERVIVSNIEGTTRD 210 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 ++ ++ + DTAGMRK ++ E++E+ ++ +++ S+ + +V++D Sbjct: 211 AIDTAFVKDGQKYRVIDTAGMRKKGKVYENIEKYSILRALSSIEKSDVIVVVIDGNQGVI 270 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 +QD + G V+L +NKWD+V +Q + + I +S +T Sbjct: 271 EQDKHVAGYAHEAGKGVILVVNKWDLVEKDEKTMQKKEKELRSQFKYLDYARIIFLSAKT 330 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 + + L + E + R+ TS LN L Q NP T ++ Y Q+ P Sbjct: 331 HQRVQQLFPLIQESFENSHKRVQTSVLNDVLVDAQAINPTTTFNGGRLKIFYANQVSICP 390 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 P+F++F P + SYKRYL NRLR +F G PI + Sbjct: 391 PTFVLFVNDPQYMHFSYKRYLENRLRDSFGFEGTPIHI 428 >gi|163841322|ref|YP_001625727.1| GTP-binding protein EngA [Renibacterium salmoninarum ATCC 33209] gi|162954798|gb|ABY24313.1| GTP-binding protein [Renibacterium salmoninarum ATCC 33209] Length = 504 Score = 235 bits (600), Expect = 9e-60, Method: Compositional matrix adjust. Identities = 147/464 (31%), Positives = 231/464 (49%), Gaps = 44/464 (9%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA-DG 63 +AIVG PNVGKSTL NR++ ++ AVV + PG+TRDR+ A NG F +VDT G D Sbjct: 69 LAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVMYNAEWNGREFTVVDTGGWEFDA 128 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 K I +++ +Q E+AI A +LF++D+ G T D ++ LR+ PII+V NK D Sbjct: 129 KG--IHQRVAEQAEMAIELADAVLFVVDATVGATAMDESMMKMLRRSKKPIILVGNKADD 186 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + ++ L E +SA+H G ++L I +I + +E R Sbjct: 187 PRTDSDVAALWGLGLGEPWSVSAQHGRGVADLLDKIMEILPE------FSEVETTDRR-- 238 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 P RIA++GRPNVGKS+L+N+L G R++ +G TRD V Sbjct: 239 -----------------GGPRRIALIGRPNVGKSSLLNKLAGSERVVVDPMAGTTRDPVD 281 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + DTAG+R+ + + + ++ ++ E +VLL +QD Sbjct: 282 EFIELGDRTWRFVDTAGIRRRQHMAQGTDFYASLRTQSALEKAEVAVVLLAVDEVLSEQD 341 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSD------KLNLLQDLRTKAIKNLPQIGDIYINTIS 357 +RI+ +G A+VLA NKWD++ D + + QDL ++ P++ IS Sbjct: 342 VRILQLAIESGRALVLAFNKWDLLDDERRRYLEREIEQDL--AHVEWAPRV------NIS 393 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 +TG D L+ ++ + W RI T LN++L + +P P + R+ + TQ Sbjct: 394 AKTGWHKDRLVPALDTALESWDRRIATGRLNAFLGELVAAHPHPVRGGKQPRILFGTQAS 453 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 S PP F++F T + Y+R++ RLR F G PI + + Sbjct: 454 SRPPKFVLFTT--GFLDPGYRRFITRRLRETFGFEGTPIEVSMR 495 >gi|296875953|ref|ZP_06900012.1| ribosome-associated GTPase EngA [Streptococcus parasanguinis ATCC 15912] gi|312868488|ref|ZP_07728688.1| ribosome biogenesis GTPase Der [Streptococcus parasanguinis F0405] gi|322390089|ref|ZP_08063624.1| ribosome-associated GTPase EngA [Streptococcus parasanguinis ATCC 903] gi|296433028|gb|EFH18816.1| ribosome-associated GTPase EngA [Streptococcus parasanguinis ATCC 15912] gi|311096233|gb|EFQ54477.1| ribosome biogenesis GTPase Der [Streptococcus parasanguinis F0405] gi|321143216|gb|EFX38659.1| ribosome-associated GTPase EngA [Streptococcus parasanguinis ATCC 903] Length = 436 Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 140/462 (30%), Positives = 243/462 (52%), Gaps = 31/462 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAIVG PNVGKSTLFNR+ +++++V + G+TRDR+Y A F+I+DT GI D Sbjct: 5 TIAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATAEWLNRKFSIIDTGGI-DD 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + +Q+ Q E+A++EA +I+F++ K GIT D +T L K + P+I+ NK+D Sbjct: 64 VDAPFMEQIKHQAEIAMDEADVIVFVVSGKEGITDADEYVTRILYKTHKPVILAVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + Y+ Y+L E + +S+ H +GT ++ I + N P N+ EE Sbjct: 124 PEMRNDIYDFYALGLGEPLPVSSVHGIGTGDVLDAIIE-------NLP------NETEEE 170 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 +P ++ +++GRPNVGKS+LIN +LG +R++ +G TRD++ Sbjct: 171 NP----------------DIIKFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAID 214 Query: 244 ISW-NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + + + DTAGMRK +I E+ E+ +V ++M+++ + +++++A + Sbjct: 215 THFTDADGQEFTMIDTAGMRKSGKIYENTEKYSVMRAMRAIDRSDVVLMVINAEEGIREY 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D RI G +++ +NKWD + + ++ + I +S T + Sbjct: 275 DKRIAGFAHEAGKGMIIVVNKWDTIEKDNHTMKQWEDDIRDQFQYLSYAPIVFVSALTKQ 334 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 L L + +I++ TRI ++ LN + NP PT + ++ Y TQ+ + PP+ Sbjct: 335 RLHKLPEMIKQISESQNTRIPSAVLNDVIMDAIAINPTPTDKGKRLKIFYATQVATKPPT 394 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 F++F + SY R+L N++R F G PI + + K Sbjct: 395 FVVFVNEEELMHFSYLRFLENQIRKAFVFEGTPIHLIARKRK 436 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/130 (30%), Positives = 66/130 (50%), Gaps = 13/130 (10%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAI-INGVIFNIVDTAGI 60 I +++G PNVGKS+L N ++ + + G TRD + +G F ++DTAG+ Sbjct: 174 IIKFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTHFTDADGQEFTMIDTAGM 233 Query: 61 -------ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIP 113 + + S+ + M AI+ + ++L +I+++ GI YD I F + Sbjct: 234 RKSGKIYENTEKYSVMRAMR-----AIDRSDVVLMVINAEEGIREYDKRIAGFAHEAGKG 288 Query: 114 IIIVSNKMDT 123 +IIV NK DT Sbjct: 289 MIIVVNKWDT 298 >gi|320451137|ref|YP_004203233.1| ribosome-associated GTPase EngA [Thermus scotoductus SA-01] gi|320151306|gb|ADW22684.1| ribosome-associated GTPase EngA [Thermus scotoductus SA-01] Length = 432 Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 136/469 (28%), Positives = 249/469 (53%), Gaps = 44/469 (9%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 ++ + IVG PNVGKS+LFNRL+ K+ AVV + PG+TRD G F +VDT G+ Sbjct: 1 MHKVVIVGRPNVGKSSLFNRLLGKRSAVVADVPGVTRDLKEGVVESEKGRFLLVDTGGLW 60 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 G K++ ++ + A+ +A ++LF +D ++ +T D+ + +LRKK P+I+V+ K+ Sbjct: 61 SGDRWE--KKIQEKVDQALEDAEVVLFAVDGRSELTQADYEVAEYLRKKGRPVILVATKV 118 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D + +Y+L F + + S+EH G EL I+ Sbjct: 119 DDPKHEHYLGPLYALGFGDPIPTSSEHARGLEELLEAIW--------------------- 157 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 E+ P +I SE + + +++A+VGRPN GKS+L+N +LG R++ + G TRD+ Sbjct: 158 EKLPVRHIESEPEVA------GIKLAIVGRPNAGKSSLLNAILGEERVIVSEEPGTTRDA 211 Query: 242 VSISWNWKNHPIEIFDTAGMRK-PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 + + + ++ P + DTAG+RK P + E L +++S++++ + ++++D PF+ Sbjct: 212 IDVHFTFRGQPFVLVDTAGIRKRPESLVEEL---AIRRSLKAIEEADVVLLVVD---PFQ 265 Query: 301 KQD--LRIVDSVFNTGHAVVLALNKWDMV--SDKLNLLQDLRTKAIKNLPQIGDIYINTI 356 D L++ + G V+L + KWD+V + + ++L+ K + +L + +Y + Sbjct: 266 VGDRELKLANHALEAGKPVLLVITKWDLVRKEEAPKVRRELKEK-LAHLEHLPRVYTSAF 324 Query: 357 SGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQI 416 T + LD + + + +L TRI T+ LN WL + P + ++ Y TQ Sbjct: 325 ---TKQNLDKIFSEAVRLFELNHTRIPTAELNRWLSVWTAKVQLPNFKGKPLKIFYATQP 381 Query: 417 QSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 + +PP+F+ F P + +++ YL NR+ + L +P R+ F+ + Sbjct: 382 EVAPPTFVFFVNHPEFVTRAFENYLKNRIGEDLGLKEVPFRLVFRGRRE 430 >gi|269978226|ref|ZP_06185176.1| ribosome-associated GTPase EngA [Mobiluncus mulieris 28-1] gi|269933735|gb|EEZ90319.1| ribosome-associated GTPase EngA [Mobiluncus mulieris 28-1] Length = 547 Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 151/462 (32%), Positives = 238/462 (51%), Gaps = 38/462 (8%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AIVG PNVGKSTL NR++ +++AVV + PG+TRDR+ A NG F+++DT G G Sbjct: 113 TVAIVGRPNVGKSTLVNRILGRRVAVVLDEPGVTRDRVIYDADWNGRDFHLIDTGGWDVG 172 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + K + Q E+AI A + LF++D+ G T D A+ LR P+I+V+NK+D+ Sbjct: 173 VK-GLDKAVATQAEIAIEMADVSLFVVDANVGATATDEAMMRLLRASKKPVILVANKVDS 231 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 A+ + +++L E ISA H G EL V+ P +E Sbjct: 232 ERAEADASGLWNLGLGEPYPISALHGRGVGELLDVLLDAL----PTVAAHRVER------ 281 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 P + S P R+A+VGRPNVGKS+L+N L G R + G TRD V Sbjct: 282 -PAD-------------STP-RVALVGRPNVGKSSLLNSLAGSGRSVVSDTPGTTRDPVD 326 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 DTAG+++ + T + +V ++ ++ + E +VLLD P +QD Sbjct: 327 EVLELDGKEWVFVDTAGIKRRIKQTVGADYYSVLRAQSAIESAEVALVLLDGGEPLSEQD 386 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSD----KLNLLQDLRTKAIKNLPQIGDIYINTISGR 359 +++V+ V +G A+VL NKWD+V + +L Q+L + P+I I+ + Sbjct: 387 VKVVNLVVESGRALVLVNNKWDLVDEYRQQELKREQELDLAHVSWAPKI------NIAAK 440 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 TG + ++ ++ + W TRI TS LN++L + +P P + R+ Y TQ Sbjct: 441 TGWHTNRIVRALEAALEGWTTRIGTSRLNTFLGELVAAHPHPLRGGKQPRILYATQAGVC 500 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 PP F++F T + Y+R++ RLR F G P+++ + Sbjct: 501 PPRFVLFTT--GFLDPQYRRFIERRLRETFGFVGTPVQIGVR 540 >gi|309379417|emb|CBX21984.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 485 Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 147/472 (31%), Positives = 226/472 (47%), Gaps = 40/472 (8%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M TIA+VG PNVGKSTLFNRL + K A+V + PG+TRDR YG + + ++DT G Sbjct: 1 MKPTIALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVIDTGGF 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + I +M QT A++EA ++FL+D + G+TP D I LR+ P+ + NK Sbjct: 61 EPVVDSGILHEMAKQTLQAVDEADAVVFLVDGRTGLTPQDKIIADRLRQSPRPVYLAVNK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKY-----PNHPLEMI 175 + E Y L + IS H G L I + F + HP+ Sbjct: 121 GEGGNRAVLAAEFYELALGDPYVISGAHGDGVYYLIEDILETFPEPEKEEEEAKHPV--- 177 Query: 176 ENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQS 235 AV+GRPNVGKSTL+N +LG R++ + Sbjct: 178 ------------------------------FAVIGRPNVGKSTLVNAILGEERVIAFDMA 207 Query: 236 GITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDA 295 G TRDS+ I + + P I DTAG+R+ ++ E++E+ +V K+MQ+V +++LDA Sbjct: 208 GTTRDSIHIDFEREGKPFTIIDTAGVRRRGKVDEAVEKFSVIKAMQAVEAANVAVLVLDA 267 Query: 296 TIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINT 355 QD I G A+V+A+NKWD +S++ + ++ + L + + Sbjct: 268 QQDIADQDATIAGFALEAGRALVVAVNKWDGISEERR--EQVKRDINRKLYFLDFAKFHF 325 Query: 356 ISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQ 415 IS G+D L S+ ++ T + LQ + PP +++Y Q Sbjct: 326 ISALKERGIDGLFESIQAAYNAAMIKMPTPKITRVLQTAVERQQPPRAGLVRPKMRYAHQ 385 Query: 416 IQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 +PP ++ + I +SY RYL R F+L G P+R+ + S+NPY Sbjct: 386 GGMNPPVIVVHGNSLHAISDSYTRYLTQTFRKAFNLQGTPLRIQYNVSENPY 437 >gi|116511562|ref|YP_808778.1| GTP-binding protein EngA [Lactococcus lactis subsp. cremoris SK11] gi|125624594|ref|YP_001033077.1| GTP-binding protein EngA [Lactococcus lactis subsp. cremoris MG1363] gi|123320527|sp|Q030L6|DER_LACLS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|166198724|sp|A2RM49|DER_LACLM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|116107216|gb|ABJ72356.1| Predicted GTPase [Lactococcus lactis subsp. cremoris SK11] gi|124493402|emb|CAL98376.1| putative phosphoglycerate dehydrogenase [Lactococcus lactis subsp. cremoris MG1363] gi|300071385|gb|ADJ60785.1| GTP-binding protein EngA [Lactococcus lactis subsp. cremoris NZ9000] Length = 436 Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 142/466 (30%), Positives = 251/466 (53%), Gaps = 39/466 (8%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AIVG PNVGKST+FNR+ +++++V + PG+TRDR+Y FNI+DT GI + Sbjct: 5 TVAIVGRPNVGKSTIFNRIAGERISIVEDIPGVTRDRIYATGEWLTRKFNIIDTGGI-EL 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + ++ Q E+A+ EA +I+ ++D + GIT D A+ + L + + P+I++ NK+D Sbjct: 64 SDEPFMTEIRAQAEIAMTEADVIIAVVDGETGITDADEAVANILYRTDKPVILIVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + ++ YSL + +SA H +GT ++ I Q PN E + NE+ Sbjct: 124 PERRMEIFDFYSLGLGDPYPVSAVHGIGTGDVLDAIV----QNLPN------EIEEENED 173 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 ++ +++GRPNVGKS+LIN +LG +R++ +G TRD++ Sbjct: 174 V-------------------IKFSLIGRPNVGKSSLINAILGEDRVIASPIAGTTRDAID 214 Query: 244 ISW-NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + + ++ + DTAGMRK +I E+ E+ +V ++M+++ + +++++A + Sbjct: 215 THFVDSEDQEFVMIDTAGMRKSGKIYENTEKYSVMRAMRAIDRSDIVLMVINAEEGIREY 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQ----DLRTKAIKNLPQIGDIYINTISG 358 D+RI G +++ +NKWD + + ++ ++RTK K L +Y+ S Sbjct: 275 DMRIAGFAHEAGKGILIVVNKWDTLEKDNDTMKKFELEIRTK-FKFLDYAPIVYV---SA 330 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 +TG+ L+ L + EI+ RI++S LN + NP PT + ++ Y TQ+ Sbjct: 331 KTGQRLNKLPDMIKEIHHAQNLRISSSVLNDVIMDAVAINPTPTDKGKRLKIFYATQVAI 390 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 PP+F++F + SY R+L N++R F G PI + + K Sbjct: 391 KPPTFVVFVNEEELMHFSYLRFLENQIRKAFVFEGTPIHLIARKRK 436 >gi|319949180|ref|ZP_08023269.1| GTP-binding protein Der [Dietzia cinnamea P4] gi|319437166|gb|EFV92197.1| GTP-binding protein Der [Dietzia cinnamea P4] Length = 488 Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 152/462 (32%), Positives = 235/462 (50%), Gaps = 39/462 (8%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 ++ T+AIVG PNVGKSTL NR++ ++ AVV + PG+TRDR+ +A+ NG F + DT G Sbjct: 51 ILPTVAIVGRPNVGKSTLVNRIIGRREAVVEDVPGVTRDRVSYEALWNGRTFMVQDTGGW 110 Query: 61 ---ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIV 117 A G + SIA+ Q E+A+ A LI+ + D GIT D + LR+ + P+I+ Sbjct: 111 EQDAKGMHRSIAQ----QAEIAMGTADLIVLVCDGTVGITAADETVARSLRRSDTPVILA 166 Query: 118 SNKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 NK+D+ A+ E + L + ISA H GT++L I + K Sbjct: 167 VNKVDSDKAELEAAEFWGLGLDQPYAISAAHGRGTADLLDEILRQLPSK----------- 215 Query: 178 NKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGI 237 R E+ P R+A+VG+PNVGKS+L+N+L G +R + + +G Sbjct: 216 -ARMREA---------------ADVPRRVALVGKPNVGKSSLLNKLTGEDRAVVDNVAGT 259 Query: 238 TRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATI 297 T D V DTAG+R+ E ++ ++ E ++LLDA+ Sbjct: 260 TVDPVDSLVELGGRTWRFVDTAGLRRKVNQAYGHEYYASLRTRGAIEAAEVVVLLLDASE 319 Query: 298 PFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQI-GDIYINTI 356 P +QDLR++ V + G A+V+A NKWD+V + DL + + L ++ + I Sbjct: 320 PITEQDLRVISMVADAGRALVIAFNKWDLVDEDRRY--DLDKEIDRELSRVLSWAHRVNI 377 Query: 357 SGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQI 416 S +TG L L+ ++ W RI T LN+W+ + PPP R R+++ TQ Sbjct: 378 SAKTGRALAKLVPAMETALDSWDKRIPTGPLNTWMNEVVAATPPPMRGGRLPRIRFCTQA 437 Query: 417 QSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 + PP+F+ F T + Y+R+L RLR F G P+R+ Sbjct: 438 TTRPPTFVFFST--GFLEAGYRRFLERRLRETFGFDGSPVRV 477 >gi|226360071|ref|YP_002777849.1| GTP-binding protein EngA [Rhodococcus opacus B4] gi|226238556|dbj|BAH48904.1| GTP-binding protein EngA [Rhodococcus opacus B4] Length = 475 Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 151/461 (32%), Positives = 236/461 (51%), Gaps = 38/461 (8%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI- 60 + T+A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ +A +G F + DT G Sbjct: 38 VPTLAVVGRPNVGKSTLVNRIIGRREAVVEDIPGVTRDRVSYEANWSGRRFMVQDTGGWE 97 Query: 61 --ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVS 118 A G S+A+Q ELA+ A IL ++D+ G T D A+ LR+ P+++V+ Sbjct: 98 PDAKGLQQSVARQ----AELAMQTADAILLVVDAVVGATATDEAVAKVLRRSKTPVLLVA 153 Query: 119 NKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 NK+D + ++SL + +SA H GT +L + Sbjct: 154 NKVDDGRTESEVAALWSLGLGQPHSVSATHGRGTGDLLDEVLAALP-------------- 199 Query: 179 KRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 E+P+E I G P R+A+VG+PNVGKS+L+N+L G R + + +G T Sbjct: 200 ----ETPREGIPGGG---------PRRVALVGKPNVGKSSLLNKLSGDERSVVHNVAGTT 246 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 D V P DTAG+RK E ++ ++ E I+L+DA+ P Sbjct: 247 VDPVDSIVELGGRPWRFVDTAGLRKRVSHASGAEFYASLRTKSAIEAAEVAILLIDASEP 306 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 +QDLR++ V + G A+V+A NKWD+V + L D ++L ++ IS Sbjct: 307 ISEQDLRVLSMVADAGRALVIAFNKWDLVDEDRRLQLDREVD--RDLVRVPWAQRVNISA 364 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 +TG + L+ ++ + W RI T LN+WL++ PPP R R+ + TQ + Sbjct: 365 QTGRAVQKLVPALDTALESWDKRIPTGRLNTWLKEVVAATPPPMRGGRLPRVMFATQAGT 424 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 PP+F++F T + Y+R+L RLR F+ G P+R+ Sbjct: 425 RPPTFVLFTT--GFLEAGYRRFLERRLREEFNFDGSPVRIS 463 >gi|295110181|emb|CBL24134.1| ribosome-associated GTPase EngA [Ruminococcus obeum A2-162] Length = 441 Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 153/464 (32%), Positives = 239/464 (51%), Gaps = 39/464 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFN L + +++V + PG+TRDR+Y F ++DT GI Sbjct: 6 VAIVGRPNVGKSTLFNALAGEMISIVKDTPGVTRDRIYADVTWLDKSFTLIDTGGIEPDS 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 I QM +Q ++AI+ A +I+F+ D + G+ D + LR+ P+++V NK+D+ Sbjct: 66 GDIILSQMREQAQIAIDTADVIVFITDVQQGLVDSDAKVADMLRRSQKPVVLVVNKVDSV 125 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + YE Y+L E + ISA + G ++ I K F + + I Sbjct: 126 QKYMMDVYEFYNLGIGEPIAISAANRTGIGDMLDEIVKEFPEDADTDEDDDI-------- 177 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 PK IAVVG+PNVGKS+LIN+LLG +R++ +G TRD+V Sbjct: 178 -PK-------------------IAVVGKPNVGKSSLINKLLGEDRVIVSDIAGTTRDAVD 217 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 WK+ DTAG+R+ +I E LE+ +V +++ +V + +V++DAT +QD Sbjct: 218 AKVKWKDREYIFIDTAGLRRKGKIKEELERYSVIRTVTAVERADVVVVVIDATEGVTEQD 277 Query: 304 LRIVDSVFNTGHAVVLALNKWDMV--SDKLNLLQDLRTKAI-KNLPQIGDIYINTISGRT 360 +I G VV+A+NKWD V DK R + + +P ++I+ SG+ Sbjct: 278 AKIAGIAHERGKGVVIAVNKWDAVEKDDKTIYKHTNRIREVLAYMPYAELVFISAKSGQR 337 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLK--YITQIQS 418 L + + +V+E L RI T LN L + PP+ +R RLK Y+TQ+ Sbjct: 338 LPRLFETIDAVIENQTL---RIQTGVLNEILSEAVAMQQPPS--DRGKRLKIFYMTQVGV 392 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 PP+F+IF + SY RY+ N++R F G ++ + Sbjct: 393 KPPTFVIFVNDKELMHFSYTRYIENKVRDAFGFRGTSLKFIIRE 436 >gi|39938726|ref|NP_950492.1| GTP-binding protein EngA [Onion yellows phytoplasma OY-M] gi|39721835|dbj|BAD04325.1| conserved hypothetical protein [Onion yellows phytoplasma OY-M] Length = 478 Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 144/480 (30%), Positives = 245/480 (51%), Gaps = 15/480 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M + IAIVG PNVGKS+LFNR++ ++ A+ GITRDR+Y A F ++DT GI Sbjct: 1 MSFKIAIVGRPNVGKSSLFNRIIGRRHAITHQKAGITRDRIYATAEWFTKTFGVIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + ++ +Q+ Q +LA++EA +I+F++D + G+T D + L K P+++ NK Sbjct: 61 -EIQSTPFLEQIKLQAQLAVDEADVIVFVVDGQTGLTQNDIYLAKLLYKTKKPVLLAVNK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN--- 177 +D N YE Y+L F IS +H +G +L I + + +E+ Sbjct: 120 IDNHNLLSNTYEFYALGFDTPFAISTQHGIGIGDLLDKIVFLMRDAALISDSSFLEDLSI 179 Query: 178 --------NKRNEESP-KENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNR 228 ++ N E P K+ + E + + + ++ VVGRPNVGKSTL N LL R Sbjct: 180 DTPLQSPPSEFNYEIPEKQLLEPEQNQNQEKDNNIIKFCVVGRPNVGKSTLTNSLLASQR 239 Query: 229 LLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCET 288 ++ +G T D+V + +I DTAG++K +I E ++ +V +++ ++ + Sbjct: 240 MIVSDMAGTTTDAVDTFFENDGQKYQIIDTAGIKKRGKIYEQEDKYSVLRALGALEKADI 299 Query: 289 TIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQI 348 ++LDA +QD I + A ++ +NKWD++ N L++ K + + Sbjct: 300 ACLVLDAKEGILEQDKNIAGFILEHHKACIIIVNKWDLLEKDTNTLKNFEQKIRQEFVFL 359 Query: 349 GDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFN-RY 407 + +S L + + + +K++ +TS LN LQ+ L PPT FN + Sbjct: 360 SYAPVIFLSALKKSRLTQIFAILKRVFNNYKSQFSTSLLNDILQEATLIT-PPTFFNQKK 418 Query: 408 NRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 + +YI Q ++ P FL F P I SY+R+L N+ R + L G P+++ F K+ + Sbjct: 419 AKFQYIFQTKTKAPEFLCFVNDPKHIHFSYERFLKNQFRKSLDLEGTPLKIIFHQKKSNF 478 >gi|284931171|gb|ADC31109.1| predicted GTPase EngA [Mycoplasma gallisepticum str. F] Length = 456 Score = 235 bits (599), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 155/465 (33%), Positives = 245/465 (52%), Gaps = 41/465 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNRL+K ++A+V + PGITRDR++G F I+DT G+ Sbjct: 4 VAIVGKPNVGKSTLFNRLIKNRIAIVDDTPGITRDRIFGDVEWLTKRFQIIDTGGLTTES 63 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDH-AITSFLRKKNIPIIIVSNKMDT 123 + + + Q + AI+EA +ILF+ K GI DH A + KN II V NK++ Sbjct: 64 DI-FQRAIEQQVQFAIDEADIILFVCSYKEGINADDHYAAKLLKKHKNKKIIFVLNKIEN 122 Query: 124 R-IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 + Q N +SL F + + ISAEH +G +L I ++ Q E++ Sbjct: 123 QNKDQLNLSSYFSLGFGKPMIISAEHAIGIGDLLDEIIRLKNQFANKKEQELVAT----- 177 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 ++G+PNVGKS+L+N+LL R+L G TRD++ Sbjct: 178 -----------------------FCIIGKPNVGKSSLLNQLLKKERVLVSDIPGTTRDAI 214 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 ++++ ++ DTAG+R+ +I +E+ +V+++ Q++ + +++LD ++ +Q Sbjct: 215 DATFSYNKELYKVIDTAGIRRKGKIETRIEKFSVQRTQQAISRSKMILLMLDGSVDLSEQ 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMV--SDK-LNLLQDLRTKAIKNLPQIGDIYINTISGR 359 D I + ++ +NKWD+V DK + L + K LP I+ IS + Sbjct: 275 DEVIGGLCYEANLPTIIVVNKWDLVKKDDKTMELFKKQIRSKFKYLPWSPIIF---ISAK 331 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLK--YITQIQ 417 +D + ++ I K +I+TS LN +QK + N PP IFN NRL Y TQ Q Sbjct: 332 ANLRIDTIFQTIKLIQAQLKIKISTSLLNDVVQKAHMINQPP-IFNG-NRLSITYTTQAQ 389 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 P+F++FC P+ + SY RYL N++R F LS +PI + F+S Sbjct: 390 GQIPTFVLFCNNPDYLHFSYARYLENKIREAFGLSYVPITLYFKS 434 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 46/124 (37%), Positives = 71/124 (57%), Gaps = 2/124 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 ++ T I+G PNVGKS+L N+L+KK+ +V + PG TRD + N ++ ++DTAGI Sbjct: 174 LVATFCIIGKPNVGKSSLLNQLLKKERVLVSDIPGTTRDAIDATFSYNKELYKVIDTAGI 233 Query: 61 -ADGK-NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVS 118 GK I K +T+ AI+ + +IL ++D ++ D I + N+P IIV Sbjct: 234 RRKGKIETRIEKFSVQRTQQAISRSKMILLMLDGSVDLSEQDEVIGGLCYEANLPTIIVV 293 Query: 119 NKMD 122 NK D Sbjct: 294 NKWD 297 Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 1/72 (1%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 L++A+VG+PNVGKSTL NRL+ + GITRD + W +I DT G+ Sbjct: 2 LKVAIVGKPNVGKSTLFNRLIKNRIAIVDDTPGITRDRIFGDVEWLTKRFQIIDTGGLTT 61 Query: 264 PSRITE-SLEQK 274 S I + ++EQ+ Sbjct: 62 ESDIFQRAIEQQ 73 >gi|148241565|ref|YP_001226722.1| GTP-binding protein EngA [Synechococcus sp. RCC307] gi|166225929|sp|A5GR60|DER_SYNR3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|147849875|emb|CAK27369.1| GTP-binding protein engA [Synechococcus sp. RCC307] Length = 452 Score = 235 bits (599), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 137/467 (29%), Positives = 241/467 (51%), Gaps = 39/467 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKSTL NRL + + A+V + PG+TRDR Y + G F +VDT G+ Sbjct: 6 VAIIGRPNVGKSTLVNRLCRSRDAIVHDEPGVTRDRTYQEGFWGGRTFRVVDTGGLVFDD 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 + ++ +Q LA+ EA + L ++D + G+T D AI ++LR++ P+++ NK ++ Sbjct: 66 DSEFLPEIREQASLAMAEACVALVIVDGQQGLTAADEAIAAWLRQQKCPVLLGVNKCESP 125 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 E ++L E ISA H GT +L + + EE Sbjct: 126 EQGLAMAAEFWALGLGEPKPISAIHGAGTGDLLDQVLDFLP-------------PQDEEE 172 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 +P +P+++A+VGRPNVGKS+L+N + G NR + G TRD++ Sbjct: 173 AP----------------EPIQMAIVGRPNVGKSSLLNTVCGENRAIVSPIRGTTRDTID 216 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 S + ++ DTAG+R+ + E + +S +++ + ++++DA +QD Sbjct: 217 TSIEREGQSWKLLDTAGIRRRRSVNYGPEFFGINRSFKAIERSDVCVLVIDAEEGVTEQD 276 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLL----QDLRTKAIKNLPQIGDIYINTISGR 359 R+ + G A ++ +NKWD+V + + ++LR+K + L ++I+ ++G+ Sbjct: 277 QRLAGRIEEEGRACLVVVNKWDLVEKDSHTMPAMEKELRSK-LYFLEWAPMLFISALTGQ 335 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKT-QLQNPPPTIFNRYNRLKYITQIQS 418 E + L V +E + + R+TT+ +N LQ+ ++PP T R RL Y TQ+ Sbjct: 336 RVERIFPLAVLAVEQH---RRRVTTAVVNEVLQEALSWRSPPTTRGGRQGRLYYGTQVAV 392 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 PPSF +F P ++Y+RY+ ++R G P+R+ ++ + Sbjct: 393 RPPSFTLFVNEPKLFGDTYRRYVERQIRQGLGFEGSPVRLFWRGKQQ 439 >gi|81428627|ref|YP_395627.1| GTP-binding protein EngA [Lactobacillus sakei subsp. sakei 23K] gi|123564226|sp|Q38WW3|DER_LACSS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|78610269|emb|CAI55318.1| Putative GTP-binding protein [Lactobacillus sakei subsp. sakei 23K] Length = 436 Score = 235 bits (599), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 136/462 (29%), Positives = 245/462 (53%), Gaps = 33/462 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKST+FNR+ +++++V + PG+TRDR+Y + G F+++DT GI + Sbjct: 6 IAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYTASEWLGHEFSLIDTGGI-EIS 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +Q+ Q E+AI+EA +I+FL+ ++ G+T D + L + PI++ NK D Sbjct: 65 DAPFMEQIKQQAEIAIDEADVIIFLVSAREGVTDADERVAQILYRAEKPILLGVNKADNP 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 +++ ++ YSL F + + +S H G +L K+P Sbjct: 125 EQRQDIFDFYSLGFGDPIPVSGAHGQGVGDLLDAAVA----KFPT--------------- 165 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 ++ E S+K +++GRPNVGKS+L+N +L +R++ G TRD++ Sbjct: 166 ---DLEEEDDDSIK-------FSLIGRPNVGKSSLVNAMLKEDRVIVSQIEGTTRDAIDT 215 Query: 245 SWNWK-NHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + + N + DTAG+RK ++ E+ E+ V ++++++ + +V+L+A +QD Sbjct: 216 KFMAENNQEFTMIDTAGIRKRGKVYENTEKYAVMRALRAIDRSDVVLVVLNAEEGIREQD 275 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIY-INTISGRTGE 362 ++ G +++ +NKWD + + +++ I+N Q D I +S +TG Sbjct: 276 KKVAGYAHEAGRGIIIVVNKWDTLEKDNHTMKEFEDH-IRNQFQYLDYAPIIFVSAKTGV 334 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 L +L + +++ RI ++ LN L + P P I + R+ Y+TQ+ PP+ Sbjct: 335 RLQNLPAMIELVSENQNRRIQSALLNDVLMEATTVTPTPAINGKRLRIYYMTQVAVQPPT 394 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 F++F N + SY+R+L N+LR F +G PI + + K Sbjct: 395 FVVFVNDINLLHFSYQRFLKNQLRKTFDFTGTPIHLIPRQRK 436 >gi|159490690|ref|XP_001703306.1| hypothetical protein CHLREDRAFT_114154 [Chlamydomonas reinhardtii] gi|158280230|gb|EDP05988.1| predicted protein [Chlamydomonas reinhardtii] Length = 450 Score = 235 bits (599), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 140/470 (29%), Positives = 252/470 (53%), Gaps = 33/470 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPG--ITRDRLYGQAIINGVIFNIVDTAGIAD 62 +A+VG PNVGKS LFNRL++++ A+V + P +TRD G+A + ++F + DT+G+ + Sbjct: 1 VALVGRPNVGKSALFNRLIRRRQALVYDTPASHVTRDYQEGRAQLGDLVFRVADTSGL-E 59 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIP---IIIVSN 119 + + A + Q ++++HL L ++D+K G+ P D + +LR+ ++P +++V+N Sbjct: 60 PRTAAAAGTIQVQRVRLLSQSHLALMVVDAKTGVLPADEELAEWLRR-HVPAGRVMVVAN 118 Query: 120 KMDTRIAQ----RNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 K + AQ + Y+ Y L F E + +SA G ++L + + PL+ Sbjct: 119 KAEGGRAQEEMPQTVYDCYRLGFGEPMAVSASTGEGLADLFAAL---------QPPLDAA 169 Query: 176 ENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQS 235 ++ EE +E+ G V +++A++G PN GKSTL+N LLG R +TG + Sbjct: 170 SDSDDEEEEDEEDAKPAGGLGV------MKLAIMGLPNAGKSTLLNALLGEQRAVTGPEP 223 Query: 236 GITRDSVSISWNWKNHPIEIFDTAG--MRKPSRITESLEQKTVKKSMQSVRTCETTIVLL 293 G+TRDSV +W + + +E+ DTAG MR+ R ++ ++ S+ V +++L Sbjct: 224 GLTRDSVRAAWTYGDTAVELVDTAGWVMRRNWRGVAAMSRRAALTSLAQV---HVVLLVL 280 Query: 294 DATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM--VSDKLNLLQDLRTKAIKNLPQIGDI 351 DA + + +V G A+V+ NK D+ V+ + + L+ + G++ Sbjct: 281 DAERALASDRVSLAGTVLREGKALVVVANKADVLSVAQRRAFTKALQRHLGERFLDAGEL 340 Query: 352 YINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLK 411 + +S R G GLDD+M + L W R++T+ LN ++QK QL+ + R+K Sbjct: 341 PVVEVSARAGTGLDDVMPTALAAYTAWNKRVSTARLNRFMQKLQLRMVGTGLDRTLERVK 400 Query: 412 YITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 Y+TQ+++ PP+F F + + +L +LR G+P+R+ F+ Sbjct: 401 YLTQLKARPPTFTAFMAGSTPVGREFGVFLAAQLREVLGFQGVPLRVWFR 450 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 47/175 (26%), Positives = 86/175 (49%), Gaps = 14/175 (8%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + +AI+G PN GKSTL N L+ ++ AV G PG+TRD + +VDTAG Sbjct: 191 VMKLAIMGLPNAGKSTLLNALLGEQRAVTGPEPGLTRDSVRAAWTYGDTAVELVDTAGWV 250 Query: 62 DGKNCSIAKQMNDQTEL-AINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 +N M+ + L ++ + H++L ++D++ + ++ + ++ +++V+NK Sbjct: 251 MRRNWRGVAAMSRRAALTSLAQVHVVLLVLDAERALASDRVSLAGTVLREGKALVVVANK 310 Query: 121 MD----------TRIAQRNFYEIYSLDFKE--IVEISAEHDLGTSELHSVIFKIF 163 D T+ QR+ E + LD E +VE+SA G ++ + Sbjct: 311 ADVLSVAQRRAFTKALQRHLGERF-LDAGELPVVEVSARAGTGLDDVMPTALAAY 364 >gi|225077176|ref|ZP_03720375.1| hypothetical protein NEIFLAOT_02231 [Neisseria flavescens NRL30031/H210] gi|224951524|gb|EEG32733.1| hypothetical protein NEIFLAOT_02231 [Neisseria flavescens NRL30031/H210] Length = 486 Score = 235 bits (599), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 146/469 (31%), Positives = 225/469 (47%), Gaps = 40/469 (8%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIA+VG PNVGKSTLFNRL + K A+V + PG+TRDR YG + + ++DT G Sbjct: 5 TIALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVIDTGGFEPV 64 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + I +M QT A++EA ++FL+D + G+TP D I LR+ P+ + NK + Sbjct: 65 VDSGILHEMAKQTLQAVDEADAVVFLVDGRTGLTPQDKIIADRLRQSPRPVYLAVNKGEG 124 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPN-----HPLEMIENN 178 E Y L + IS H G L I + F + HP+ Sbjct: 125 GNRAVLAAEFYELALGDPYVISGAHGDGVYYLIEDILETFPEPEKEEEAAKHPV------ 178 Query: 179 KRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 AV+GRPNVGKSTL+N +LG R++ +G T Sbjct: 179 ---------------------------FAVIGRPNVGKSTLVNAILGEERVIAFDMAGTT 211 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RDS+ I + + P I DTAG+R+ ++ E++E+ +V K+MQ+V +++LDA Sbjct: 212 RDSIHIDFEREGKPFTIIDTAGVRRRGKVDEAVEKFSVIKAMQAVEAANVAVLVLDAQQD 271 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 QD I G A+V+A+NKWD +S++ + ++ + L + + IS Sbjct: 272 IADQDATIAGFALEAGRALVVAVNKWDGISEERR--EQVKRDINRKLYFLDFAKFHFISA 329 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 G+D L S+ ++ T + LQ + PP +++Y Q Sbjct: 330 LKERGIDGLFESIQAAYNAAMIKMPTPKITRVLQSAIERQQPPRAGLVRPKMRYAHQGGM 389 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 +PP ++ + I +SY RYL R F+L G P+R+ + S+NPY Sbjct: 390 NPPVIVVHGNSLHAISDSYTRYLTQTFRKAFNLQGTPLRIQYNVSENPY 438 >gi|218767960|ref|YP_002342472.1| GTP-binding protein EngA [Neisseria meningitidis Z2491] gi|26006740|sp|Q9JV01|DER_NEIMA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|121051968|emb|CAM08277.1| putative GTP-binding protein [Neisseria meningitidis Z2491] Length = 485 Score = 235 bits (599), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 147/472 (31%), Positives = 226/472 (47%), Gaps = 40/472 (8%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M TIA+VG PNVGKSTLFNRL + K A+V + PG+TRDR YG + + ++DT G Sbjct: 1 MKPTIALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVIDTGGF 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + I +M QT A++EA ++FL+D + G+TP D I LR+ P+ + NK Sbjct: 61 EPVVDSGILHEMAKQTLQAVDEADAVVFLVDGRTGLTPQDKIIADRLRQSPRPVYLAVNK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKY-----PNHPLEMI 175 + E Y L + IS H G L I + F + HP+ Sbjct: 121 GEGGNRAVLAAEFYELALGDPYVISGAHGDGVYYLIEDILETFPEPEKEEEEAKHPV--- 177 Query: 176 ENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQS 235 AV+GRPNVGKSTL+N +LG R++ + Sbjct: 178 ------------------------------FAVIGRPNVGKSTLVNAILGEERVIAFDMA 207 Query: 236 GITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDA 295 G TRDS+ I + + P I DTAG+R+ ++ E++E+ +V K+MQ+V +++LDA Sbjct: 208 GTTRDSIHIDFEREGKPFTIIDTAGVRRRGKVDEAVEKFSVIKAMQAVEAANVAVLVLDA 267 Query: 296 TIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINT 355 QD I G A+V+A+NKWD +S++ + ++ + L + + Sbjct: 268 QQDIADQDATIAGFALEAGRALVVAVNKWDGISEERR--EQVKRDINRKLYFLDFAKFHF 325 Query: 356 ISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQ 415 IS G+D L S+ ++ T + LQ + PP +++Y Q Sbjct: 326 ISALKERGIDGLFDSIQAAYNAAMIKMPTPKITRVLQSAIERQQPPRAGLVRPKMRYAHQ 385 Query: 416 IQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 +PP ++ + I +SY RYL R F+L G P+R+ + S+NPY Sbjct: 386 GGMNPPVIVVHGNSLHAISDSYTRYLTQTFRKAFNLQGTPLRIQYNVSENPY 437 >gi|40062766|gb|AAR37660.1| GTP-binding protein, Era/TrmE family [uncultured marine bacterium 439] Length = 463 Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 146/467 (31%), Positives = 247/467 (52%), Gaps = 32/467 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIING-VIFNIVDTAGIADG 63 I++VG PNVGKSTLFNRL + A+V + G+TRDR Y ++ + +I+DT G+ + Sbjct: 6 ISLVGRPNVGKSTLFNRLSNSRQALVSDFEGLTRDRQYATVQLDDETMCSIIDTGGLTN- 64 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 ++ I +++Q A++E+ +I F++ +K G+T D I+S LRK II+V NK + Sbjct: 65 EDSLIDTGIHEQVLSALDESDVIFFIVSNKDGVTSLDLDISSQLRKLKKNIILVCNKAEG 124 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + Q E + L E V ISAEH+ G SEL + + Q + N+ E+ Sbjct: 125 -LNQVTAAEFFELGLGEPVLISAEHNQGISELIEITIPLLPQNFENNETEV--------- 174 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 K + +AV+GRPNVGKSTLINR+LG R+L G TRD++ Sbjct: 175 ------------------KGIAVAVLGRPNVGKSTLINRILGEERVLAIDIPGTTRDTIF 216 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 I + + + DTAG+R+ + E +E+ ++ K+++++ I++LDA +QD Sbjct: 217 IPFTREGEQYTLIDTAGIRRKRSVEEKVEKFSIIKAIEALEDSHVVILVLDAHEGVTEQD 276 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 ++ + + G A+++ +NKWD + D +++ K L I ++ IS G G Sbjct: 277 ATLLGMIADKGRALLIVINKWDGLDDYQK--SEVKRKLDVKLSFISYASVHYISALHGSG 334 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 + L + + + + +TS LN L+K ++ P + R +LKY+ Q PP+ Sbjct: 335 VGKLFTHIRKSFEHAGAKFSTSSLNKILEKANNKHQAPAVGGRRPKLKYVHQSDVFPPTL 394 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 + +IP+SY+++L N + LS PI++ F++ NP+ K Sbjct: 395 TMHGNHLQRIPKSYEQFLKNFFIDSLKLSNTPIKLLFKTGDNPFKDK 441 >gi|261400171|ref|ZP_05986296.1| ribosome-associated GTPase EngA [Neisseria lactamica ATCC 23970] gi|269210170|gb|EEZ76625.1| ribosome-associated GTPase EngA [Neisseria lactamica ATCC 23970] Length = 485 Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 146/469 (31%), Positives = 225/469 (47%), Gaps = 40/469 (8%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIA+VG PNVGKSTLFNRL + K A+V + PG+TRDR YG + + ++DT G Sbjct: 4 TIALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVIDTGGFEPV 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + I +M QT A++EA ++FL+D + G+TP D I LR+ P+ + NK + Sbjct: 64 VDSGILHEMAKQTLQAVDEADAVVFLVDGRTGLTPQDKIIADRLRQSPRPVYLAVNKGEG 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPN-----HPLEMIENN 178 E Y L + IS H G L I + F + HP+ Sbjct: 124 GNRAVLAAEFYELALGDPYVISGAHGDGVYYLIEDILETFPEPEKEEEAAKHPV------ 177 Query: 179 KRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 AV+GRPNVGKSTL+N +LG R++ +G T Sbjct: 178 ---------------------------FAVIGRPNVGKSTLVNAILGEERVIAFDMAGTT 210 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RDS+ I + + P I DTAG+R+ ++ E++E+ +V K+MQ+V +++LDA Sbjct: 211 RDSIHIDFEREGKPFTIIDTAGVRRRGKVDEAVEKFSVIKAMQAVEAANVAVLVLDAQQD 270 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 QD I G A+V+A+NKWD +S++ + ++ + L + + IS Sbjct: 271 IADQDATIAGFALEAGRALVVAVNKWDGISEERR--EQVKRDISRKLYFLDFAKFHFISA 328 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 G+D L S+ ++ T + LQ + PP +++Y Q Sbjct: 329 LKERGIDGLFDSIQAAYNAAMIKMPTPKITRVLQTAVERQQPPRAGLVRPKMRYAHQGGM 388 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 +PP ++ + I +SY RYL R F+L G P+R+ + S+NPY Sbjct: 389 NPPVIVVHGNSLHAISDSYTRYLTQTFRKAFNLQGTPLRIQYNVSENPY 437 >gi|301632619|ref|XP_002945379.1| PREDICTED: hypothetical protein LOC100487340 [Xenopus (Silurana) tropicalis] Length = 937 Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 130/398 (32%), Positives = 214/398 (53%), Gaps = 25/398 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTLFNRL + + A+V + G+TRDR YG + ++DT G Sbjct: 12 IALVGRPNVGKSTLFNRLTRSRDAIVADFAGLTRDRHYGNGRQGKHAYIVIDTGGFEPDA 71 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + I ++M QT A+ E+ ++LF++D++AG++ DH I+++LR+ P ++V+NK + Sbjct: 72 SSGIFREMAKQTRQAVAESDVVLFVVDARAGVSAQDHGISNYLRRLGKPCLLVANKAEGM 131 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + E Y L E+ +SA H G L + PL + + + Sbjct: 132 QSGAQLSEFYELGLGEVYPVSAAHGQGVRGLVERALE---------PLNLPDPDA----- 177 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 G + ++ P+++AV GRPNVGKSTLIN LG RL+ G TRD++S+ Sbjct: 178 --------GAAELQEGLGPVKLAVAGRPNVGKSTLINTWLGEERLVAFDLPGTTRDAISV 229 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + E+ DTAG+R+ R+ E++E+ +V K++Q++ + ++LLDAT QD Sbjct: 230 PFERQGQKFELIDTAGLRRKGRVFEAIEKFSVVKTLQAIESANVVLLLLDATQGVTDQDA 289 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 I + +G AVV+A+NKWD V D + +A + + +++ IS + +GL Sbjct: 290 HIAGYILESGRAVVIAVNKWDAVDDYQRQMLGRSIEARLSFLKFANLHF--ISAQKRQGL 347 Query: 365 DDLMVSVLEINKLWKTRITTSYLNS-WLQKTQLQNPPP 401 L S+++ +K ++ T L L+ Q Q P P Sbjct: 348 GPLWTSIMQAHKAAGCKMPTPILTRLLLESVQFQTPKP 385 >gi|111017940|ref|YP_700912.1| GTP-binding protein EngA [Rhodococcus jostii RHA1] gi|110817470|gb|ABG92754.1| GTP-binding protein [Rhodococcus jostii RHA1] Length = 475 Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 151/461 (32%), Positives = 236/461 (51%), Gaps = 38/461 (8%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI- 60 + T+A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ +A +G F + DT G Sbjct: 38 VPTLAVVGRPNVGKSTLVNRIIGRREAVVEDIPGVTRDRVSYEANWSGRRFMVQDTGGWE 97 Query: 61 --ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVS 118 A G S+A+Q ELA+ A IL ++D+ G T D A+ LR+ P+++V+ Sbjct: 98 PDAKGLQQSVARQ----AELAMQTADAILLVVDAVVGATATDEAVAKVLRRSKTPVLLVA 153 Query: 119 NKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 NK+D + ++SL + +SA H GT +L + Sbjct: 154 NKVDDGRTESEVAALWSLGLGQPHSVSATHGRGTGDLLDEVLAALP-------------- 199 Query: 179 KRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 E+P+E I G P R+A+VG+PNVGKS+L+N+L G R + + +G T Sbjct: 200 ----ETPREGIPGGG---------PRRVALVGKPNVGKSSLLNKLSGDERSVVHNVAGTT 246 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 D V P DTAG+RK E ++ ++ E I+L+DA+ P Sbjct: 247 VDPVDSIVELGGRPWRFVDTAGLRKRVSHASGAEFYASLRTKSAIEAAEVAILLIDASEP 306 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 +QDLR++ V + G A+V+A NKWD+V + L D ++L ++ IS Sbjct: 307 ISEQDLRVLSMVADAGRALVIAFNKWDLVDEDRRLQLDREVD--RDLVRVPWAQRVNISA 364 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 +TG + L+ ++ + W RI T LN+WL++ PPP R R+ + TQ + Sbjct: 365 QTGRAVQKLVPALDTALESWDKRIPTGRLNTWLKEVIAATPPPMRGGRLPRVMFATQAGT 424 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 PP+F++F T + Y+R+L RLR F+ G P+R+ Sbjct: 425 RPPTFVLFTT--GFLEAGYRRFLERRLREEFNFDGSPVRIS 463 >gi|253578391|ref|ZP_04855663.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251850709|gb|EES78667.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 441 Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 140/462 (30%), Positives = 237/462 (51%), Gaps = 35/462 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFN L +K+++V + PG+TRDR+Y F ++DT GI Sbjct: 6 VAIVGRPNVGKSTLFNALAGEKISIVKDTPGVTRDRIYADVTWLDKTFTMIDTGGIEPDS 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 + I QM +Q ++AI+ A +I+F+ D G+ D + LR+ P+++V NK+D+ Sbjct: 66 SDIILSQMREQAQIAIDTADVIIFITDVHQGLVDSDAKVADMLRRSGKPVVLVVNKVDSI 125 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + YE Y+L E + ISA + +G ++ + K F + + I Sbjct: 126 QKFMMDVYEFYNLGIGEPIPISAANRMGLGDMLDEVAKHFPEDADTEEDDEIP------- 178 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 RIA+VG+PNVGKS+L+N+LLG +R++ +G TRD+V Sbjct: 179 ---------------------RIAIVGKPNVGKSSLVNKLLGEDRVIVSDIAGTTRDAVD 217 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 W+ DTAG+R+ ++ E +E+ +V +++ +V + IV++DA+ +QD Sbjct: 218 TRVKWQGKDYIFIDTAGLRRKGKVKEEIERYSVIRTVTAVERADVVIVMIDASEGVTEQD 277 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVS--DKLNLLQDLRTKAI-KNLPQIGDIYINTISGRT 360 +I G V++A+NKWD + DK R + + +P ++I+ +G Sbjct: 278 AKIAGIAHERGKGVIIAVNKWDAIEKNDKTIYKHTNRIREVLAYMPYAELVFISAKTGLR 337 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 + + + +V+E L RI T LN L + PP+ + ++ Y+TQ+ P Sbjct: 338 ISRMFETIDAVIENQTL---RIQTGVLNEILSEAVAMQQPPSDKGKRLKIYYMTQVAVKP 394 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 P+F+IF + SY RYL N++R F +G ++ + Sbjct: 395 PTFVIFVNDKELMHFSYTRYLENKIRDAFGFAGTSLKFIIRE 436 >gi|13357944|ref|NP_078218.1| GTP-binding protein EngA [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|170762344|ref|YP_001752466.1| GTP-binding protein EngA [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171920231|ref|ZP_02931603.1| GTP-binding protein EngA [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|183508601|ref|ZP_02958112.1| GTP-binding protein EngA [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186701797|ref|ZP_02971472.1| GTP-binding protein EngA [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|26006745|sp|Q9PQA7|DER_UREPA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|189037169|sp|B1AJ22|DER_UREP2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|11280266|pir||B82899 conserved hypothetical ATP/GTP-binding protein UU383 [imported] - Ureaplasma urealyticum gi|6899367|gb|AAF30793.1|AE002135_9 conserved hypothetical ATP/GTP-binding protein [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168827921|gb|ACA33183.1| GTP-binding protein EngA [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171902626|gb|EDT48915.1| GTP-binding protein EngA [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|182676057|gb|EDT87962.1| GTP-binding protein EngA [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186701078|gb|EDU19360.1| GTP-binding protein EngA [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 442 Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 147/462 (31%), Positives = 248/462 (53%), Gaps = 35/462 (7%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAIVG PNVGKS+LFNR++ ++ ++V + PG+TRDR+Y F ++DT GI Sbjct: 3 TIAIVGKPNVGKSSLFNRILMRRKSIVDDQPGVTRDRIYDIGNWLTRSFMLIDTGGIISS 62 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKK--NIPIIIVSNKM 121 K+ + +N+Q AINEA+ I+FL+ +K GI D I L++K + II+V NK+ Sbjct: 63 KD-TYQDNINEQVLFAINEANTIIFLVSAKDGINNDDKKIAKMLKEKAKDKKIILVINKI 121 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 ++ N E+YS F + +ISAEH +G +L + K + P I+NN Sbjct: 122 ESEKYYLNEGELYSFGFGKFFKISAEHGIGMGDLLDELVK-------DMP---IQNNLEK 171 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 +E + ++GRPNVGKS+L N +LG R++ +++G TRDS Sbjct: 172 QER-------------------FKFCIIGRPNVGKSSLTNTILGEQRVIVNAEAGSTRDS 212 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 + +N+ N I DTAG+R+ +I ES+E+ V ++ +++ + +++LD + PF++ Sbjct: 213 IDNDFNYYNKKYTIIDTAGIRRKGKIVESVEKYAVLRTKKAIERSQLILLVLDGSEPFKE 272 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKN-LPQIGDIYINTISGRT 360 QD + +N ++ +NKWD + +K + ++ K I++ + I +S Sbjct: 273 QDEVVGGLAYNANIPTIIIVNKWDNIINKNSHTMEMVKKQIRSQFKYLSWAPIVFVSALD 332 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQ-LQNPPPTIFNRYNRLKYITQIQSS 419 + + + ++ + + +I TS LN + K Q PPP R + + YI Q+QS Sbjct: 333 NKRIHTIFEAIEFVREQAMRKIATSLLNDVVIKANAFQEPPPFKGGRIS-ISYIVQVQSQ 391 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 P+F++ C P + SY RY+ N +R F +PI + +Q Sbjct: 392 IPTFVLKCNNPKFLHFSYARYIENEIRKAFGFDSVPITLYWQ 433 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 41/122 (33%), Positives = 60/122 (49%), Gaps = 2/122 (1%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI-A 61 + I+G PNVGKS+L N ++ ++ +V G TRD + + I+DTAGI Sbjct: 175 FKFCIIGRPNVGKSSLTNTILGEQRVIVNAEAGSTRDSIDNDFNYYNKKYTIIDTAGIRR 234 Query: 62 DGKNC-SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 GK S+ K +T+ AI + LIL ++D D + NIP II+ NK Sbjct: 235 KGKIVESVEKYAVLRTKKAIERSQLILLVLDGSEPFKEQDEVVGGLAYNANIPTIIIVNK 294 Query: 121 MD 122 D Sbjct: 295 WD 296 >gi|315655298|ref|ZP_07908198.1| ribosome-associated GTPase EngA [Mobiluncus curtisii ATCC 51333] gi|315490238|gb|EFU79863.1| ribosome-associated GTPase EngA [Mobiluncus curtisii ATCC 51333] Length = 523 Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 146/462 (31%), Positives = 234/462 (50%), Gaps = 38/462 (8%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ A NG F++VDT G D Sbjct: 88 TLAVVGRPNVGKSTLVNRILGRREAVVLDEPGVTRDRVMYDAHWNGRNFHLVDTGGW-DV 146 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + + + DQ E+AI+ A LF++D+ G T D + LR+ P+++V+NK+D+ Sbjct: 147 GVSGLDRAVADQAEIAIDLADAALFVVDANVGATATDERLMKLLRRAGKPVLLVANKVDS 206 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + +++L + ISA H GT +L I ++ E Sbjct: 207 ERQEADAAALWNLGMGQPYPISALHGRGTGDLLDAILQVLP------------------E 248 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 S +T S+ R+A+VGRPNVGKS+L+N L G R + G TRD V Sbjct: 249 SGATQVTRAEDSTP-------RVALVGRPNVGKSSLLNSLSGAGRAVVSEVPGTTRDPVD 301 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 DTAG+R+ + + + +V ++ ++ + +VLLD P +QD Sbjct: 302 EVLELDGQQWVFVDTAGVRRRVKRSVGADYYSVLRTQAAIENADVALVLLDGGEPLTEQD 361 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSD----KLNLLQDLRTKAIKNLPQIGDIYINTISGR 359 +R+V+ V G A+VL NKWD+V + +L Q+ + P+I IS + Sbjct: 362 VRVVNQVIEAGRALVLVNNKWDLVDEYRQGELKYEQEADLAHVSWAPKI------NISAK 415 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 TG + + ++ + W RI TS LN++L + +P P + R+ Y TQ Sbjct: 416 TGWHTNRITRALQAALEGWTIRIPTSRLNAFLGELVAAHPHPLRGGKQPRILYATQAGVC 475 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 PP F++F T + Y+R++ +RLR F G P+R+ + Sbjct: 476 PPRFVLFTT--GFLDPQYRRFIEHRLRDAFGFVGTPVRIGVR 515 >gi|297161654|gb|ADI11366.1| GTP-binding protein EngA [Streptomyces bingchenggensis BCW-1] Length = 488 Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 138/471 (29%), Positives = 240/471 (50%), Gaps = 58/471 (12%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD-- 62 +A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ +A +G F +VDT G Sbjct: 53 LAVVGRPNVGKSTLVNRIIGRREAVVEDRPGVTRDRVTYEAEWSGRRFKVVDTGGWEQDV 112 Query: 63 -GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 G + S+A Q E AI A ++F++D+ G T D A+ LR+ P+++ +NK+ Sbjct: 113 LGIDASVAA----QAEFAIEAADAVVFVVDATVGATDTDEAVVKLLRRAGKPVVLCANKV 168 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D A+ + ++SL E +SA H GT ++ + + Sbjct: 169 DGPSAEADAAMLWSLGLGEPYPVSALHGRGTGDMLDAVLEALP----------------- 211 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 E+P + + I P RIA++GRPNVGKS+L+N++ G R++ +G TRD Sbjct: 212 -EAPAQTFGA-------AIGGPRRIALIGRPNVGKSSLLNKVAGEERVVVNEMAGTTRDP 263 Query: 242 V-------SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLD 294 V ++W + DTAG+R+ + E + ++ +V E ++L+D Sbjct: 264 VDELIELGGVTWKF-------VDTAGIRRRVHLQEGADYYASLRTAAAVEKAELAVILID 316 Query: 295 ATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSD--KLNLLQDLRTK--AIKNLPQIGD 350 ++ QD RI+ G A+V+A NKWD + + + L +++ T+ I+ P++ Sbjct: 317 SSESISVQDQRIISMAVEAGRAIVVAYNKWDTLDEERRYYLEREIETELGQIQWAPRV-- 374 Query: 351 IYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRL 410 +S RTG ++ L+ ++ W+TR+ T LN++L + +P P + R+ Sbjct: 375 ----NVSARTGRHMEKLVPAIETALTGWETRVPTGRLNAFLGEIVASHPHPVRGGKQPRI 430 Query: 411 KYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 + TQ + PP F++F + + Y+R++ RLR F G P+++ + Sbjct: 431 LFGTQAGTKPPRFVLFAS--GFLEAGYRRFVERRLREEFGFEGTPLQISVR 479 >gi|312139844|ref|YP_004007180.1| gtpase [Rhodococcus equi 103S] gi|325674279|ref|ZP_08153968.1| ribosome-associated GTPase EngA [Rhodococcus equi ATCC 33707] gi|311889183|emb|CBH48497.1| GTPase [Rhodococcus equi 103S] gi|325554959|gb|EGD24632.1| ribosome-associated GTPase EngA [Rhodococcus equi ATCC 33707] Length = 481 Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 155/464 (33%), Positives = 237/464 (51%), Gaps = 40/464 (8%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI- 60 + T+A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ A G F + DT G Sbjct: 42 VPTLAVVGRPNVGKSTLVNRIIGRREAVVEDIPGVTRDRVSYDANWAGRRFMVQDTGGWE 101 Query: 61 --ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVS 118 A G S+A+Q ELA+N A IL ++D+ G T D A LR+ P+I+V+ Sbjct: 102 PDAKGLQQSVARQ----AELAMNTADAILLVVDAVVGATATDEAAVRVLRRSKTPVILVA 157 Query: 119 NKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 NK+D + ++SL E +SA H GT +L + ++ Sbjct: 158 NKVDDARTEAEAAALWSLGLGEPHMVSATHGRGTGDLLDEVLRVLP-------------- 203 Query: 179 KRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 E+P+E G P R+A+VG+PNVGKS+L+N+L G R + +G T Sbjct: 204 ----ETPREGTGGGG---------PRRVALVGKPNVGKSSLLNKLSGDERSVVHDVAGTT 250 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 D V + DTAG+RK E ++ ++ E I+L+DA+ P Sbjct: 251 VDPVDSLVELGGKVWKFVDTAGLRKKVSHASGHEFYASLRTKSAIEAAEVAILLIDASKP 310 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMV-SDKLNLLQDLRTKAIKNLPQIGDIYINTIS 357 +QDLR++ V +TG A+VLA NKWD+V D+ +L+ + + +P + I+ + Sbjct: 311 ITEQDLRVLSMVADTGRALVLAFNKWDLVDEDRRLMLEKEIDRELVRVPWAQRVNISAHT 370 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 GR + L + + LE W RI T LN+WL++ PPP R R+ + TQ Sbjct: 371 GRAVQKLVPALDTALES---WDKRIPTGRLNNWLKEVVAATPPPMRGGRLPRIMFATQAG 427 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 + PP+F++F T + Y+R+L RLR F G P+R+ + Sbjct: 428 TRPPTFVLFTT--GFLEAGYRRFLERRLREEFGFDGSPVRISVR 469 >gi|319410209|emb|CBY90548.1| GTP-binding protein engA [Neisseria meningitidis WUE 2594] Length = 536 Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 147/472 (31%), Positives = 226/472 (47%), Gaps = 40/472 (8%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M TIA+VG PNVGKSTLFNRL + K A+V + PG+TRDR YG + + ++DT G Sbjct: 52 MKPTIALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVIDTGGF 111 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + I +M QT A++EA ++FL+D + G+TP D I LR+ P+ + NK Sbjct: 112 EPVVDSGILHEMAKQTLQAVDEADAVVFLVDGRTGLTPQDKIIADRLRQSPRPVYLAVNK 171 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKY-----PNHPLEMI 175 + E Y L + IS H G L I + F + HP+ Sbjct: 172 GEGGNRAVLAAEFYELALGDPYVISGAHGDGVYYLIEDILETFPEPEKEEEEAKHPV--- 228 Query: 176 ENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQS 235 AV+GRPNVGKSTL+N +LG R++ + Sbjct: 229 ------------------------------FAVIGRPNVGKSTLVNAILGEERVIAFDMA 258 Query: 236 GITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDA 295 G TRDS+ I + + P I DTAG+R+ ++ E++E+ +V K+MQ+V +++LDA Sbjct: 259 GTTRDSIHIDFEREGKPFTIIDTAGVRRRGKVDEAVEKFSVIKAMQAVEAANVAVLVLDA 318 Query: 296 TIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINT 355 QD I G A+V+A+NKWD +S++ + ++ + L + + Sbjct: 319 QQDIADQDATIAGFALEAGRALVVAVNKWDGISEERR--EQVKRDINRKLYFLDFAKFHF 376 Query: 356 ISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQ 415 IS G+D L S+ ++ T + LQ + PP +++Y Q Sbjct: 377 ISALKERGIDGLFDSIQAAYNAAMIKMPTPKITRVLQSAIERQQPPRAGLVRPKMRYAHQ 436 Query: 416 IQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 +PP ++ + I +SY RYL R F+L G P+R+ + S+NPY Sbjct: 437 GGMNPPVIVVHGNSLHAISDSYTRYLTQTFRKAFNLQGTPLRIQYNVSENPY 488 >gi|241068611|ref|XP_002408485.1| GTP-binding protein EngA, putative [Ixodes scapularis] gi|215492473|gb|EEC02114.1| GTP-binding protein EngA, putative [Ixodes scapularis] Length = 317 Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 131/338 (38%), Positives = 194/338 (57%), Gaps = 25/338 (7%) Query: 134 YSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEESPKENITSEG 193 Y L F +V ISAEH G L+ I K P EES + NI Sbjct: 2 YKLGFDSMVAISAEHGTGLINLYDEII----AKLPE------------EESIETNIADPI 45 Query: 194 KSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPI 253 K L+I V GRPN GKST IN L+ RLLTG ++GITR+S+ I W +KN+ I Sbjct: 46 KGDC------LQIVVSGRPNAGKSTFINALINDERLLTGPEAGITRESIEIDWQYKNNHI 99 Query: 254 EIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNT 313 ++ DTAG+RK S ITESLE+ + ++ S++ T I+++DA +P ++QDL I V N Sbjct: 100 KLIDTAGLRKKSTITESLEKLSASDTINSIKFANTVILMIDALVPLKQQDLNIASHVVNE 159 Query: 314 GHAVVLALNKWDMV--SDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSV 371 G ++V+ +NKWD+V S+K ++ + +LPQ+ + + IS + ++ ++ + Sbjct: 160 GRSIVIVVNKWDLVKESEKEAFQEEFYYQINTHLPQVKGVPVLFISAINKQNIEQVLDAC 219 Query: 372 LEINKLWKTRITTSYLNSWLQKTQLQNP-PPTIFNRYNRLKYITQIQSSPPSFLIFCTFP 430 L+I K+W +ITTS LN WL T +P P + R+KY+ Q ++ PP+F +F P Sbjct: 220 LKIYKIWNKKITTSKLNEWLNFTTEAHPLPLQKGGKRVRVKYMAQTKTRPPTFKLFSNNP 279 Query: 431 NKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYI 468 KI +SY RYL+N +R F + GIPIR + +KNPY+ Sbjct: 280 GKITDSYTRYLVNNMREAFDMPGIPIRFTYVKTKNPYV 317 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 55/120 (45%), Gaps = 2/120 (1%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 I + G PN GKST N L+ + + G GITR+ + ++DTAG+ Sbjct: 52 IVVSGRPNAGKSTFINALINDERLLTGPEAGITRESIEIDWQYKNNHIKLIDTAGLRKKS 111 Query: 65 NC--SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 S+ K T +I A+ ++ +ID+ + D I S + + I+IV NK D Sbjct: 112 TITESLEKLSASDTINSIKFANTVILMIDALVPLKQQDLNIASHVVNEGRSIVIVVNKWD 171 >gi|288930105|ref|ZP_06423943.1| ribosome-associated GTPase EngA [Prevotella sp. oral taxon 317 str. F0108] gi|288328578|gb|EFC67171.1| ribosome-associated GTPase EngA [Prevotella sp. oral taxon 317 str. F0108] Length = 437 Score = 234 bits (597), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 148/462 (32%), Positives = 236/462 (51%), Gaps = 38/462 (8%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +AIVG PNVGKSTLFNRL K + A+V + G TRDR YG+ G F++VDT G Sbjct: 1 MANLVAIVGRPNVGKSTLFNRLTKTRSAIVSDTAGTTRDRQYGKCDWAGREFSVVDTGGW 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + + Q +A EA L+LFL+D G+T D + LR+ +P+++V NK Sbjct: 61 VVNSDDIFEDAIRRQVLVATEEADLVLFLVDVNTGVTDLDEDVAQILRRTKVPVVLVVNK 120 Query: 121 MDTRIAQRNFYE---IYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 D YE YSL + ISA GT +L + K Sbjct: 121 ADN---NEQIYEAPAFYSLGLGDPFPISAATGSGTGDLLDAVIAQLK------------- 164 Query: 178 NKRNEESPKENITSEGKSSVKNISKPL-RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSG 236 P EN +N+ + R AVVGRPN GKS+++N +G +R + +G Sbjct: 165 -------PGEN---------ENVEDGIPRFAVVGRPNAGKSSIVNAFIGEDRNIVTEIAG 208 Query: 237 ITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDAT 296 TRDS+ ++ + DTAG+R+ +++TE LE +V +S++++ + I+++DAT Sbjct: 209 TTRDSIYTRFDKFGFDFYLVDTAGIRRKNKVTEDLEFYSVMRSIRAIEHSDVCILMIDAT 268 Query: 297 IPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKN-LPQIGDIYINT 355 E QD+ I + ++V+ +NKWD+V DK + AI+ + D I Sbjct: 269 RGIESQDMNIFQLIQKNQKSLVVVVNKWDLVPDKDQKVIKTFENAIRERMAPFVDFPIIF 328 Query: 356 ISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQ 415 S T + + ++ + ++ K R+ TS LN + PPP+ +Y ++KY TQ Sbjct: 329 ASALTKQRIFKVLETAKQVYLNRKARVGTSKLNEVMLPLIEAYPPPSTKGKYIKIKYCTQ 388 Query: 416 IQSSP-PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 + ++ PSF+ + P + E+Y+R+L N++R N+++ G PI Sbjct: 389 LPNTQIPSFVFYANLPQYVKENYRRFLENKIRENWNMHGCPI 430 >gi|325265091|ref|ZP_08131818.1| ribosome-associated GTPase EngA [Clostridium sp. D5] gi|324029781|gb|EGB91069.1| ribosome-associated GTPase EngA [Clostridium sp. D5] Length = 442 Score = 234 bits (597), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 146/470 (31%), Positives = 235/470 (50%), Gaps = 45/470 (9%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFN L + +++V + PG+TRDR+Y F ++DT GI Sbjct: 6 VAIVGRPNVGKSTLFNALAGEMISIVKDTPGVTRDRIYADVSWLDREFTMIDTGGIEPDS 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I QM +Q ++AI+ A +I+F+ D K G+ D + LR+ P+I+V NK+D Sbjct: 66 RDVILSQMREQAQIAIDTADVIIFITDVKQGLVDSDSKVADMLRRSGKPVILVVNKVD-- 123 Query: 125 IAQRNF-------YEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 NF YE Y+L + V ISA LG ++ + +P E E+ Sbjct: 124 ----NFDKFMPDVYEFYNLGIGDPVPISAASRLGLGDMLDEV----TAHFPKSAGEEEED 175 Query: 178 NKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGI 237 ++ P RIA+VG+PNVGKS++IN+LLG NR++ +G Sbjct: 176 DR-----P-------------------RIAIVGKPNVGKSSIINKLLGENRVIVSDVAGT 211 Query: 238 TRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATI 297 TRD++ DTAG+R+ SRI E LE+ ++ +++ +V + ++++DA Sbjct: 212 TRDAIDTEILHDGKEYIFIDTAGLRRKSRIKEELERYSIIRTVTAVERADVVLIVIDAEE 271 Query: 298 PFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTIS 357 +QD +I G +++ +NKWD V +++ K + L + I +S Sbjct: 272 GVTEQDAKIAGIAHERGKGIIIVVNKWDAVEKNDKTMREYDNKIRQVLSYLSYAEIMYVS 331 Query: 358 GRTGEGLDDL--MVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQ 415 TG+ L+ L M+ ++ N+ R+ T LN + + PP+ + +L YITQ Sbjct: 332 AVTGQRLNKLYEMIDIVIENQTL--RVATGVLNEIMTEAVAMQQPPSDKGKRLKLYYITQ 389 Query: 416 IQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 + PP+F+IF + SY RYL N++R F G ++ + K Sbjct: 390 VSVKPPTFVIFVNDKELMHFSYTRYLENKIREAFGFRGTSLKFFIRERKE 439 >gi|294660274|ref|NP_852940.2| putative GTPase EngA [Mycoplasma gallisepticum str. R(low)] gi|298286805|sp|Q7NBV2|DER_MYCGA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|284811930|gb|AAP56508.2| predicted GTPase EngA [Mycoplasma gallisepticum str. R(low)] gi|284930404|gb|ADC30343.1| predicted GTPase EngA [Mycoplasma gallisepticum str. R(high)] Length = 456 Score = 234 bits (597), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 157/465 (33%), Positives = 246/465 (52%), Gaps = 41/465 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNRL+K ++A+V + PGITRDR++G F I+DT G+ Sbjct: 4 VAIVGKPNVGKSTLFNRLIKNRIAIVDDTPGITRDRIFGDVEWLTKRFQIIDTGGLTTES 63 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDH-AITSFLRKKNIPIIIVSNKMDT 123 + + + Q + AI+EA +ILF+ K GI DH A + KN II V NK++ Sbjct: 64 DV-FQRAIEQQVQFAIDEADIILFVCSYKEGINADDHYAAKLLKKHKNKKIIFVLNKIEN 122 Query: 124 R-IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 + Q N +SL F + + ISAEH +G +L I + Q NK+ + Sbjct: 123 QNKDQLNLSSYFSLGFGKPMIISAEHAIGIGDLLDEIIGLKDQ----------FGNKKEQ 172 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 E ++G+PNVGKS+L+N+LL R+L G TRD++ Sbjct: 173 ELVAT------------------FCIIGKPNVGKSSLLNQLLKKERVLVSDIPGTTRDAI 214 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 ++++ ++ DTAG+R+ +I +E+ +V+++ Q++ + +++LD ++ +Q Sbjct: 215 DATFSYNKELYKVIDTAGIRRKGKIATRIEKFSVQRTQQAISRSKMILLMLDGSVDLSEQ 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMV--SDK-LNLLQDLRTKAIKNLPQIGDIYINTISGR 359 D I + ++ +NKWD+V DK + L + K LP I+ IS + Sbjct: 275 DEVIGGLCYEANLPTIIVVNKWDLVKKDDKTMELFKKQIRSKFKYLPWSPIIF---ISAK 331 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLK--YITQIQ 417 +D + ++ I K +I+TS LN +QK + N PP IFN NRL Y TQ Q Sbjct: 332 ANLRIDTIFQTIKLIQAQLKIKISTSLLNDVVQKAHMINQPP-IFNG-NRLSITYTTQAQ 389 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 P+F++FC P+ + SY RYL N++R F LS +PI + F+S Sbjct: 390 GQIPTFVLFCNNPDYLHFSYARYLENKIREAFGLSYVPITLYFKS 434 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 46/124 (37%), Positives = 72/124 (58%), Gaps = 2/124 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 ++ T I+G PNVGKS+L N+L+KK+ +V + PG TRD + N ++ ++DTAGI Sbjct: 174 LVATFCIIGKPNVGKSSLLNQLLKKERVLVSDIPGTTRDAIDATFSYNKELYKVIDTAGI 233 Query: 61 -ADGKNCS-IAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVS 118 GK + I K +T+ AI+ + +IL ++D ++ D I + N+P IIV Sbjct: 234 RRKGKIATRIEKFSVQRTQQAISRSKMILLMLDGSVDLSEQDEVIGGLCYEANLPTIIVV 293 Query: 119 NKMD 122 NK D Sbjct: 294 NKWD 297 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 1/72 (1%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 L++A+VG+PNVGKSTL NRL+ + GITRD + W +I DT G+ Sbjct: 2 LKVAIVGKPNVGKSTLFNRLIKNRIAIVDDTPGITRDRIFGDVEWLTKRFQIIDTGGLTT 61 Query: 264 PSRITE-SLEQK 274 S + + ++EQ+ Sbjct: 62 ESDVFQRAIEQQ 73 >gi|111221687|ref|YP_712481.1| GTP-binding protein EngA [Frankia alni ACN14a] gi|111149219|emb|CAJ60904.1| GTP-binding protein [Frankia alni ACN14a] Length = 502 Score = 234 bits (597), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 147/457 (32%), Positives = 231/457 (50%), Gaps = 31/457 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ A+ NG F +VDT G + Sbjct: 64 VAVVGRPNVGKSTLVNRILGRRAAVVEDVPGVTRDRIAYDAVWNGRRFTLVDTGGW-EPD 122 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +A Q+++Q A++ A +LF++D G T D A+ L + +P+I+V+NK+D Sbjct: 123 ASGLAAQVSEQASAALDTADAVLFIVDVTTGATDADEAVARVLHRSGLPVILVANKVDDN 182 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + ++ L E +SA H G+ +L + + E+ Sbjct: 183 RFESDAAALWGLGLGEPHPVSALHGRGSGDLLDAVLAVLP------------------EA 224 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P+E T P R+A++GRPNVGKS+L+N++ G R L +G TRD V Sbjct: 225 PREVFT--------ETDGPRRVALIGRPNVGKSSLLNKIAGSRRSLVHDVAGTTRDPVDE 276 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 DTAG+R+ R E + ++ ++ E IVLL A P +QD Sbjct: 277 LVTVGGEEWMFIDTAGLRRRIREASGAEYYSSLRTAAALEAAEVAIVLLAADEPLTEQDQ 336 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 R++ V G A+V+A NKWD+V + L + ++L +I IS RTG Sbjct: 337 RVITMVIEAGRALVIAFNKWDLVDEDRRYT--LEREIDRDLGRIAWAPRVNISARTGRAT 394 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 D L ++ + W TRI T LN+WL + PPP + ++ + TQ PP F+ Sbjct: 395 DRLAPALRTALESWGTRIPTGRLNTWLGEVVGATPPPARGGKVPKILFATQAGVRPPRFV 454 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 +F T + +Y+R+L RLR +F +G PI + + Sbjct: 455 VFTT--GFLEPAYRRFLERRLREDFGFAGSPIAISVR 489 >gi|269127039|ref|YP_003300409.1| small GTP-binding protein [Thermomonospora curvata DSM 43183] gi|268311997|gb|ACY98371.1| small GTP-binding protein [Thermomonospora curvata DSM 43183] Length = 463 Score = 234 bits (597), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 142/461 (30%), Positives = 234/461 (50%), Gaps = 40/461 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAG-IADG 63 +A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ +A +G IVDT G + D Sbjct: 27 VAVVGRPNVGKSTLVNRVLGRREAVVEDVPGVTRDRVSYEADWSGRRLTIVDTGGWLPDA 86 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 +A + +Q LA+ A ++LF++D+ G T D A+ LR+ P+++V+NK+D Sbjct: 87 --TGLAAAVAEQARLAVELADVVLFVVDATVGATDVDEAVVDILRRSGKPVLLVANKVDD 144 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + ++SL E +SA H G+ +L + + Sbjct: 145 AATELDAAALWSLGIGEPHPVSALHGRGSGDLLDAVLAALPEPP---------------- 188 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 P E+ G P R+A++GRPNVGKS+L+N+L G NR++ +G TRD V Sbjct: 189 PPTEDAAGGG---------PRRVALLGRPNVGKSSLLNKLAGENRVVVDDVAGTTRDPVD 239 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 DTAG+R+ R ++ + ++ ++ E +VL+DA+ P +QD Sbjct: 240 ELIELGGRTWRFIDTAGIRRRYRESQGADFYATLRTQSALERAEVAVVLIDASQPLAEQD 299 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDK----LNLLQDLRTKAIKNLPQIGDIYINTISGR 359 LRI+ V G A+V+A NKWD++ ++ L D + + P++ IS Sbjct: 300 LRIISMVIEAGRALVIAYNKWDLLDEERRHYLEREIDRQLHNARWAPRV------NISAL 353 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 TG +D L+ ++ W +R+ T+ LN + +P P + ++ + TQ Sbjct: 354 TGRHVDKLVPALDTALAGWGSRVPTAKLNQFFSALVAAHPHPVRGGKQPKILFATQADVR 413 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCF 460 PP F++F T + ESY+R++ RLR F +G PI + Sbjct: 414 PPRFVLFTT--GFLEESYRRFIERRLREEFGFAGTPIDITM 452 Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 57/192 (29%), Positives = 93/192 (48%), Gaps = 12/192 (6%) Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 +E +++ V+ P +AVVGRPNVGKSTL+NR+LG + G+TRD Sbjct: 2 SEHDVYQSVAEAAGDGVRQDRVPPVVAVVGRPNVGKSTLVNRVLGRREAVVEDVPGVTRD 61 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 VS +W + I DT G + L +++ +V + + ++DAT+ Sbjct: 62 RVSYEADWSGRRLTIVDTGGWLPDA---TGLAAAVAEQARLAVELADVVLFVVDATVGAT 118 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 D +VD + +G V+L NK D + +L+ A+ +L IG+ + +S Sbjct: 119 DVDEAVVDILRRSGKPVLLVANKVDDAATELD------AAALWSL-GIGEPH--PVSALH 169 Query: 361 GEGLDDLMVSVL 372 G G DL+ +VL Sbjct: 170 GRGSGDLLDAVL 181 >gi|153812950|ref|ZP_01965618.1| hypothetical protein RUMOBE_03357 [Ruminococcus obeum ATCC 29174] gi|149830897|gb|EDM85987.1| hypothetical protein RUMOBE_03357 [Ruminococcus obeum ATCC 29174] Length = 441 Score = 234 bits (597), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 151/464 (32%), Positives = 239/464 (51%), Gaps = 39/464 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFN L + +++V + PG+TRDR+Y F ++DT GI Sbjct: 6 VAIVGRPNVGKSTLFNALAGEMISIVKDTPGVTRDRIYADVTWLDKSFTLIDTGGIEPDS 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 I QM +Q ++AI+ A +I+F+ D + G+ D + LR+ P+++V NK+D+ Sbjct: 66 GDIILSQMREQAQIAIDTADVIVFITDVQQGLVDSDAKVADMLRRSQKPVVLVVNKVDSV 125 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + YE Y+L E V ISA + G ++ I K F + + I Sbjct: 126 QKYMMDVYEFYNLGIGEPVAISAANRTGIGDMLDEIIKEFPEDLDAEEDDDI-------- 177 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 PK +AVVG+PNVGKS+LIN+LLG +R++ +G TRD+V Sbjct: 178 -PK-------------------VAVVGKPNVGKSSLINKLLGEDRVIVSDIAGTTRDAVD 217 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 WK+ DTAG+R+ +I E +E+ +V +++ +V + +V++DAT +QD Sbjct: 218 AKVKWKDREYIFIDTAGLRRKGKIKEEIERYSVIRTVTAVERADVVVVVIDATEGVTEQD 277 Query: 304 LRIVDSVFNTGHAVVLALNKWDMV--SDKLNLLQDLRTKAI-KNLPQIGDIYINTISGRT 360 +I G V++A+NKWD V DK R + + +P ++I+ SG+ Sbjct: 278 AKIAGIAHERGKGVIIAVNKWDAVEKDDKTIYKHTNRIREVLAYMPYAELVFISAKSGQR 337 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLK--YITQIQS 418 L + + +V+E L RI T LN L + PP+ +R RLK Y+TQ+ Sbjct: 338 LPKLFETIDAVIENQTL---RIQTGVLNEILSEAVAMQQPPS--DRGKRLKIFYMTQVGV 392 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 PP+F+IF + SY RY+ N++R F G ++ + Sbjct: 393 KPPTFVIFVNDKELMHFSYTRYIENKVRDAFGFRGTSLKFIIRE 436 >gi|260910017|ref|ZP_05916700.1| ribosome-associated GTPase EngA [Prevotella sp. oral taxon 472 str. F0295] gi|260635847|gb|EEX53854.1| ribosome-associated GTPase EngA [Prevotella sp. oral taxon 472 str. F0295] Length = 437 Score = 234 bits (597), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 148/461 (32%), Positives = 237/461 (51%), Gaps = 36/461 (7%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +AIVG PNVGKSTLFNRL K + A+V + G TRDR YG+ +G F++VDT G Sbjct: 1 MANLVAIVGRPNVGKSTLFNRLTKTRSAIVSDTAGTTRDRQYGKCDWSGREFSVVDTGGW 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + + Q +A EA L+LFL+D G+T D + LR+ +P+++V NK Sbjct: 61 VVNSDDIFEDAIRRQVLVATEEADLVLFLVDVNTGVTDLDEDVAQILRRTKVPVLLVVNK 120 Query: 121 MDTRIAQRNFYE---IYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 D YE YSL + ISA GT +L + + K Sbjct: 121 ADN---NEQIYEAPVFYSLGLGDPFPISAATGSGTGDLLDAVIEKLKPG----------- 166 Query: 178 NKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGI 237 + E+ ++ I R AVVGRPNVGKS++IN +G +R + +G Sbjct: 167 ---DSENVEDGIP--------------RFAVVGRPNVGKSSIINAFIGEDRNIVTEIAGT 209 Query: 238 TRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATI 297 TRDS+ ++ + DTAG+R+ +++TE LE +V +S++S+ + I+++DAT Sbjct: 210 TRDSIYTRFDKFGFDFYLVDTAGIRRKNKVTEDLEFYSVMRSIRSIEHSDVCILMIDATR 269 Query: 298 PFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKN-LPQIGDIYINTI 356 E QD+ I + ++V+ +NKWD+V+DK + AI+ + D I Sbjct: 270 GIEAQDMNIFQLIQKNQKSLVVVVNKWDLVADKDQKVIKTFENAIRERMAPFVDFPIIFA 329 Query: 357 SGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQI 416 S T + + ++ + ++ K + TS LN + PPP+ +Y ++KY TQ+ Sbjct: 330 SALTKQRIFKVLETAKQVYLNRKAHVGTSKLNEVMLPLIEAYPPPSTKGKYIKIKYCTQL 389 Query: 417 QSSP-PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 ++ PSF+ + P + E+Y+R+L N++R N+ + G PI Sbjct: 390 PNTQIPSFVFYANLPQYVKENYRRFLENKIRDNWDMHGCPI 430 >gi|220912306|ref|YP_002487615.1| GTP-binding protein EngA [Arthrobacter chlorophenolicus A6] gi|219859184|gb|ACL39526.1| small GTP-binding protein [Arthrobacter chlorophenolicus A6] Length = 516 Score = 234 bits (597), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 145/463 (31%), Positives = 233/463 (50%), Gaps = 42/463 (9%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKSTL NR++ ++ AVV + PG+TRDR+ A NG F +VDT G + Sbjct: 81 LAIIGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVMYSASWNGRNFTLVDTGGW-EHD 139 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I ++ +Q E+A+ A +LF++DS G T D + LR+ P+I+V+NK+D Sbjct: 140 ARGIHARVAEQAEMAVELADAVLFVVDSAVGATATDEGVMKMLRRSKKPVIMVANKVDDF 199 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + ++ L F E +SA H G ++L + + Sbjct: 200 AQEADSAALWGLGFGEPYPVSALHGRGVADLLDHVMDVL--------------------- 238 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 E T EG V+ P RIA++GRPNVGKS+L+N+L G R++ + +G TRD V Sbjct: 239 -PEFSTVEG---VERSGGPRRIALIGRPNVGKSSLLNKLAGTERVVVDNTAGTTRDPVDE 294 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + DTAG+R+ + + + ++ ++ E +VLL +QD+ Sbjct: 295 FIELGDRTWRFVDTAGIRRRQHMAQGADYYASLRTQAALEKAEVAVVLLAVDEVLSEQDV 354 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSD------KLNLLQDLRTKAIKNLPQIGDIYINTISG 358 RI+ +G A+VLA NKWD++ D + + QDL ++ P++ IS Sbjct: 355 RILQLAIESGRALVLAFNKWDLLDDERRRYLEREIEQDL--AHVEWAPRV------NISA 406 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 +TG D L+ ++ + W RI T LN++L + +P P + R+ + TQ S Sbjct: 407 KTGWHKDRLVPALDLALENWDRRIPTGRLNAFLGELVAAHPHPVRGGKQPRILFGTQASS 466 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 PP F++F T + Y+R++ RLR F G PI + + Sbjct: 467 RPPKFVLFTT--GFLDPGYRRFITRRLRETFGFEGTPIEVSMR 507 >gi|167768008|ref|ZP_02440061.1| hypothetical protein CLOSS21_02551 [Clostridium sp. SS2/1] gi|317498398|ref|ZP_07956693.1| ribosome-associated GTPase EngA [Lachnospiraceae bacterium 5_1_63FAA] gi|167710337|gb|EDS20916.1| hypothetical protein CLOSS21_02551 [Clostridium sp. SS2/1] gi|291561010|emb|CBL39810.1| ribosome-associated GTPase EngA [butyrate-producing bacterium SSC/2] gi|316894292|gb|EFV16479.1| ribosome-associated GTPase EngA [Lachnospiraceae bacterium 5_1_63FAA] Length = 440 Score = 234 bits (597), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 141/464 (30%), Positives = 235/464 (50%), Gaps = 35/464 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTLFN L +K+++V + PG+TRDR+Y F ++DT GI Sbjct: 6 IAIVGRPNVGKSTLFNALAGEKISIVKDTPGVTRDRIYADVTWLNYQFTLIDTGGIEPDS 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 + M Q E+A+ A +I+FL D + G+ D+ + LR+ PI++ NK+D Sbjct: 66 GDLLLSHMRGQAEIAMETADVIIFLTDVRQGLVDADYQVADMLRRSGKPIVLAVNKVDNY 125 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + YE Y+L +SA +G +L + ++ P + +++ +E Sbjct: 126 EKFVLDTYEFYNLGLGTPFPVSANSKIGFGDL---LDEVLVHCNPQ------DADEKEDE 176 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 P R+A++G+PN GKS+LIN+LLG +RL+ +G TRD++ Sbjct: 177 RP-------------------RVAIIGKPNAGKSSLINKLLGEDRLIVSDIAGTTRDAID 217 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + DTAG+RK +R+ E +E+ +V +++ +V C+ I+++DA +QD Sbjct: 218 TTVKRNGKEYVFIDTAGLRKKARVKEDIERYSVIRTVAAVERCDVAILVIDAEEGITEQD 277 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 +I G +++A+NKWD++ + + + L + + IS +TG+ Sbjct: 278 AKIAGIAHERGKGMIIAVNKWDLIEKNDKTIYKFTNQVREVLSYMSYAELVFISAKTGQR 337 Query: 364 LD---DLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 L D++ V+E + L R+ T LN L + PP+ + +L YITQ+ P Sbjct: 338 LPKIFDVLDMVIENHAL---RVQTGVLNEILTEAVAMKQPPSDKGKRLKLYYITQVSVKP 394 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 P+F++F + SY RYL N++R F G PI + + K Sbjct: 395 PTFVVFINDRQLMHFSYTRYLENQIRNTFGFRGTPIHIIARERK 438 >gi|262202714|ref|YP_003273922.1| ribosome-associated GTPase EngA [Gordonia bronchialis DSM 43247] gi|262086061|gb|ACY22029.1| ribosome-associated GTPase EngA [Gordonia bronchialis DSM 43247] Length = 478 Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 140/426 (32%), Positives = 221/426 (51%), Gaps = 34/426 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA-DG 63 +AIVG PNVGKSTL NR++ ++ AVV + PG+TRDR+ A +G F +VDT G D Sbjct: 44 LAIVGRPNVGKSTLVNRILGRREAVVEDIPGVTRDRVSYAASWSGRRFTVVDTGGWEPDA 103 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 K + + + Q ELA+ A I+ ++D+ G T D A+ LR+ P+I+ +NK+D+ Sbjct: 104 KG--LQQAVAAQAELAMRTADAIVLVVDATVGATATDEAVARVLRRSKTPVILAANKVDS 161 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + ++SL E +SA H G +L VI +K P E Sbjct: 162 ERLEAEAASLWSLGLGEPFTVSAAHGRGAGDLLDVIL----EKLP--------------E 203 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 +P+E + P R+A+VG+PNVGKS+L+N+L G R + + +G T D V Sbjct: 204 TPREG---------PALGGPRRVALVGKPNVGKSSLLNKLAGAERSVVDNVAGTTVDPVD 254 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + DTAG+R+ R E ++ ++ E I+L+DA+ P +QD Sbjct: 255 ELIELDGKTWQFVDTAGLRRKVRTASGHEYYASLRTRAALDAAEVAILLIDASEPITEQD 314 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVS-DKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 LR++ + ++G A+++A NKWD+V D+ L + + +P + I+ +GR Sbjct: 315 LRVLSLIIDSGRALIIAFNKWDLVDEDRRYQLDKEIDRELARVPWASRVNISASTGRAVH 374 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 L + S L+ W RI+T LN+WL+ NPPP R R+ + TQ + PP+ Sbjct: 375 KLVPALESALDS---WDKRISTGPLNNWLKDVIAANPPPLRGGRQPRVLFATQAATRPPT 431 Query: 423 FLIFCT 428 F++F T Sbjct: 432 FVLFTT 437 Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 56/193 (29%), Positives = 100/193 (51%), Gaps = 12/193 (6%) Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 ++ES E ++G ++ +A+VGRPNVGKSTL+NR+LG + G+TRD Sbjct: 19 SDESDWELGQADGFDGAADVEHMPVLAIVGRPNVGKSTLVNRILGRREAVVEDIPGVTRD 78 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 VS + +W + DT G ++ L+Q ++ ++RT + ++++DAT+ Sbjct: 79 RVSYAASWSGRRFTVVDTGGWEPDAK---GLQQAVAAQAELAMRTADAIVLVVDATVGAT 135 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 D + + + V+LA NK D S++L + ++ +L +G+ + T+S Sbjct: 136 ATDEAVARVLRRSKTPVILAANKVD--SERL----EAEAASLWSL-GLGEPF--TVSAAH 186 Query: 361 GEGLDDLMVSVLE 373 G G DL+ +LE Sbjct: 187 GRGAGDLLDVILE 199 >gi|37522779|ref|NP_926156.1| GTP-binding protein EngA [Gloeobacter violaceus PCC 7421] gi|41017005|sp|Q7NGF9|DER_GLOVI RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|35213781|dbj|BAC91151.1| gll3210 [Gloeobacter violaceus PCC 7421] Length = 455 Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 140/462 (30%), Positives = 233/462 (50%), Gaps = 32/462 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKSTL NRL A+V + PG+TRDRLY A G F +VDT G+ Sbjct: 6 VAIIGRPNVGKSTLLNRLAGGSEAIVYDQPGVTRDRLYLPAEWCGYRFEVVDTGGLVFED 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 + + +Q E+A+ EA +LF++D + GIT D + +LR + P++IV+NK++ Sbjct: 66 SEVFLPLIREQVEIALAEAAAVLFVVDGQQGITGGDREVADWLRGRKPPVLIVANKLEEP 125 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 A E Y+L E +SA H GT +L + + + P +E Sbjct: 126 STALSLAAEFYALGLGEPYAVSAIHGSGTGDLLDALVAVLPKDQPEE-----------QE 174 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLG--YNRLLTGSQSGITRDS 241 P+ LR+++VGRPNVGKS+L+N L+G + R + +G TRD+ Sbjct: 175 LPE-----------------LRVSIVGRPNVGKSSLLNALVGGEHPRSMVSEVAGTTRDA 217 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 + + DTAG+R+ SR+ E V ++++++R + ++++DAT Sbjct: 218 IDTLVEHGERRYRLIDTAGIRRKSRVDYGPEAFGVTRAIRAIRRADVVVLVVDATEGIHD 277 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTG 361 Q+ + + + G A VL +NKWD + + R + + L + + S TG Sbjct: 278 QERNLAAKIASAGRACVLVVNKWDAIEKDTYTMNHYRDEMRRELDFVEWAPVVFTSALTG 337 Query: 362 EGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQL-QNPPPTIFNRYNRLKYITQIQSSP 420 + ++ + ++ + R++TS LN LQ L ++PP + R ++ Y TQI ++P Sbjct: 338 QRVEKIFDAIDAAAGQHQRRVSTSVLNEALQDALLWRSPPASRQGRQGKVYYATQIATNP 397 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 P+F++F E Y+RYL + R + G P+R F+ Sbjct: 398 PTFVLFVNDTKLFKEGYRRYLEGQFRGSLGFEGSPVRFIFRG 439 >gi|160939128|ref|ZP_02086479.1| hypothetical protein CLOBOL_04022 [Clostridium bolteae ATCC BAA-613] gi|158438091|gb|EDP15851.1| hypothetical protein CLOBOL_04022 [Clostridium bolteae ATCC BAA-613] Length = 442 Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 146/464 (31%), Positives = 236/464 (50%), Gaps = 33/464 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFN + +++V + PG+TRDR+Y + F ++DT GI Sbjct: 6 VAIVGRPNVGKSTLFNVIAGDTISIVKDTPGVTRDRIYADCDWLNMNFTLIDTGGIEPDS 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I QM +Q E+AI+ A +I+F++D + G+ D + LRK + P+++ NK+D+ Sbjct: 66 KDIILSQMREQAEIAISTADVIIFIVDVRQGLVDSDSKVADLLRKSHKPVVLAVNKVDSV 125 Query: 125 IAQRN-FYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 N YE Y+L E V +SA LG +L + K F + Sbjct: 126 AKYGNDVYEFYNLGIGEPVAVSAASRLGIGDLLDEVVKHFDSE----------------- 168 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 + + +P RIAVVG+PNVGKS++IN+L+G NR++ +G TRD+V Sbjct: 169 ----------QMEEEEDERP-RIAVVGKPNVGKSSIINKLVGENRVIVSDIAGTTRDAVD 217 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + P DTAG+R+ S+I E LE+ ++ +++ +V + +V++DAT +QD Sbjct: 218 TEVIHEGTPYVFIDTAGLRRKSKIKEELERYSIIRTVSAVERADVVVVVIDATEGVTEQD 277 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 +I G +++A+NKWD + + + K + L I IS TG+ Sbjct: 278 AKIAGIAHERGKGIIVAVNKWDAIEKTDKTIYEYTRKIKEVLSFIPYAEYLFISAATGQR 337 Query: 364 LDDL--MVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 L L M+ V+ N+ R+ T LN + + PP+ + ++ Y+TQ+ PP Sbjct: 338 LTKLFEMIDVVRQNQ--NLRVATGVLNEIMTEAVAMQQPPSDKGKRLKIYYMTQVAVKPP 395 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 +F+IF + SY RYL N++R F G ++ + K Sbjct: 396 TFVIFVNDKELMHFSYTRYLENQIRNAFGFKGTSLKFLVRERKG 439 >gi|71893425|ref|YP_278871.1| GTP-binding protein EngA [Mycoplasma hyopneumoniae J] Length = 434 Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 141/459 (30%), Positives = 237/459 (51%), Gaps = 35/459 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG NVGKSTLFNR+ KK+++ PG+TRDR+Y N F ++DT GI + Sbjct: 6 VALVGKSNVGKSTLFNRIAGKKISITNPLPGVTRDRIYQNVTWNQHSFLLIDTGGIQI-E 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N + + Q ++A+ EA ++++++D I DH + S LRK II+V+NK++ Sbjct: 65 NENFQDLVRIQVQIALEEADILVWVLDGTKEIDSEDHFVLSLLRKSKKKIILVANKLEN- 123 Query: 125 IAQRNF-YEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 ++F ++ L F+++ ISA H G + + F +K N +NE Sbjct: 124 --NKSFDISLFELGFEKVFPISALHGHGVGDFLDELVGNFNKK-----------NFKNEI 170 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 ++ ++GRPN GKS+L+N LLG NR + G TRDS+S Sbjct: 171 F-------------------FKLTLIGRPNAGKSSLLNWLLGENRSIISEIPGTTRDSIS 211 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 W +EI DTAG+RK S++ ES++ ++ +S+ + T++LLDA F D Sbjct: 212 GFWKINGQTLEIIDTAGIRKKSKLAESVDFYAFLRAFRSLDQADLTLILLDACQDFHHFD 271 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 LRI F ++L +NKWD++ Q+ K + + IS +TGE Sbjct: 272 LRIAGYAFERNKPIILVINKWDLIQKDTRTQQEYLRKIKGKFKFLDWAPVVFISAKTGEK 331 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 + L+ + ++ + +I+T+ LN +L + Q+ P P + + ++ QI P+F Sbjct: 332 IHKLIDVIFQVKNNLEKKISTNLLNQFLMEIQMIQPHPNVNGKKVYFNFLEQIYGKIPTF 391 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 + F T N + SY+RY+ N++R F G PI++ +++ Sbjct: 392 IFFVTDKNLVHFSYQRYIENQMRKYFDFFGCPIKIIYKN 430 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 56/175 (32%), Positives = 91/175 (52%), Gaps = 15/175 (8%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 + + + ++G PN GKS+L N L+ + +++ PG TRD + G ING I+DTAGI Sbjct: 170 IFFKLTLIGRPNAGKSSLLNWLLGENRSIISEIPGTTRDSISGFWKINGQTLEIIDTAGI 229 Query: 61 ADGKNCSIAKQMNDQTEL----AINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIII 116 K +A+ ++ L ++++A L L L+D+ +D I + ++N PII+ Sbjct: 230 R--KKSKLAESVDFYAFLRAFRSLDQADLTLILLDACQDFHHFDLRIAGYAFERNKPIIL 287 Query: 117 VSNKM-----DTRIAQRNFYEIYS----LDFKEIVEISAEHDLGTSELHSVIFKI 162 V NK DTR Q +I LD+ +V ISA+ +L VIF++ Sbjct: 288 VINKWDLIQKDTRTQQEYLRKIKGKFKFLDWAPVVFISAKTGEKIHKLIDVIFQV 342 >gi|256370714|ref|YP_003108539.1| GTP-binding protein EngA [Candidatus Sulcia muelleri SMDSEM] gi|256009506|gb|ACU52866.1| GTP-binding protein EngA [Candidatus Sulcia muelleri SMDSEM] Length = 438 Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 152/461 (32%), Positives = 243/461 (52%), Gaps = 25/461 (5%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M ++IVG NVGKSTLFNRL+ K ++V + G+TRDR YG NG+ F ++DT G Sbjct: 1 MTKLVSIVGRSNVGKSTLFNRLIGYKKSIVNSKSGVTRDRNYGFCNWNGIDFCLIDTGGY 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + N K++ +Q A+ E+ LILFL+D I D+ I+ L K I +V NK Sbjct: 61 TNKFNNIFDKKICEQFFFALEESDLILFLVDPSNKILEIDYEISKILHKLKKTIYLVINK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D + N E + L F + IS+ + GT EL I +IFK + ++ K+ Sbjct: 121 IDLLKKKENISEFFKLGFSKKYCISSINGAGTGELLDSIVEIFKNTETDFFVK-----KK 175 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 N+ PK +A+VGRPNVGKSTLIN LL N+ + + SG TRD Sbjct: 176 NQFIPK-------------------LAIVGRPNVGKSTLINTLLKKNQNIVSNISGTTRD 216 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ + + + DTAG+RK ++I E++E +V ++++S++ + ++L+D+ E Sbjct: 217 SLEVFYKKFGIECILVDTAGIRKKNKIKENIEFYSVMRAIKSIKNSDVCLLLIDSISGME 276 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 QDL I + N ++L +NK D++ +K + P D+ I S Sbjct: 277 SQDLNIFKIIENNNKGIILLINKCDLIKNKFLEKIFKKQIKKIIAP-FKDVPIFFTSSYK 335 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 + L + + ++I K +I TS LN + + P P I + +KY +Q+ + Sbjct: 336 KKNLIKSLKTAIKIAFKLKLKIKTSLLNKIMLPIINKYPHPLINGKPITIKYCSQLPTYN 395 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 P F+ F +PN I +SYKR++ +LR F+ +GIPI++ F+ Sbjct: 396 PQFIFFSNYPNLIKKSYKRFIEKKLREKFNFTGIPIKILFR 436 >gi|255326187|ref|ZP_05367273.1| ribosome-associated GTPase EngA [Rothia mucilaginosa ATCC 25296] gi|255296641|gb|EET75972.1| ribosome-associated GTPase EngA [Rothia mucilaginosa ATCC 25296] Length = 526 Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 143/461 (31%), Positives = 244/461 (52%), Gaps = 38/461 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST+ NR++ ++ AVV + PG+TRDR+ +A G F +VDT G + Sbjct: 77 VAIVGRPNVGKSTIINRILGRREAVVEDKPGVTRDRVSYKAEWLGKSFTLVDTGGW-ESD 135 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I Q+ +Q E+A+ +A +++ ++D++ G+T D I LR+ PII+++NK+D Sbjct: 136 ARGIDAQVAEQAEIAVEQADVVVLVVDARVGVTASDEQIVRMLRRVKKPIILIANKIDDA 195 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + Y ++SL + +S H G ++ I ++ P H Sbjct: 196 HLEPEIYNLWSLGMGQPFPVSGLHGRGLADALDEILEVM----PEHSQ------------ 239 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 + + + P R+A+VGRPNVGKS+L+N+L G R + +G TRD + Sbjct: 240 ---------FAQPEALGGPRRVALVGRPNVGKSSLLNKLAGSERAVVNDLAGTTRDPIDE 290 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 +P DTAG+R+ + + E + ++ ++ E +VLLD + P +QD+ Sbjct: 291 IIELGGYPWRFVDTAGIRRRQHMAKGAEFYSSLRTQTALERSEVAVVLLDVSEPISEQDV 350 Query: 305 RIVDSVFNTGHAVVLALNKWDMV-SDKLNLLQ---DLRTKAIKNLPQIGDIYINTISGRT 360 RIV +V ++G A+VLA NKWD + D+ ++L+ D ++ P++ IS +T Sbjct: 351 RIVQTVIDSGRAMVLAFNKWDTLDEDRRDMLEREIDRDLAHVQWAPRV------NISAKT 404 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G D L+ ++ + W +RI T LN++L + +P P + R+ + TQ+ S P Sbjct: 405 GWHKDKLVPALEHSLESWDSRIPTGRLNAFLGEIVAAHPHPMRGGKQPRILFGTQVSSRP 464 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 P F++F T + Y+R+++ RLR F +G PI + + Sbjct: 465 PKFVLFTT--GFLDPGYRRFIMRRLRETFDFTGTPIEISMR 503 >gi|293192791|ref|ZP_06609686.1| ribosome-associated GTPase EngA [Actinomyces odontolyticus F0309] gi|292820038|gb|EFF79036.1| ribosome-associated GTPase EngA [Actinomyces odontolyticus F0309] Length = 517 Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 148/465 (31%), Positives = 237/465 (50%), Gaps = 46/465 (9%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI---A 61 +A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ A G F +VDT G Sbjct: 84 LAVVGRPNVGKSTLVNRILGRREAVVQDTPGVTRDRVSYPAEWAGRDFTLVDTGGWEIDV 143 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 G + S+A+Q E+A++ A ++ ++D+ G+T D I LR K PII+ +NK+ Sbjct: 144 KGLDRSVAEQ----AEIAVDLADAVVLVLDATVGVTASDERIVEMLRAKKKPIILAANKV 199 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D+ + + + ++SL E ISA H GT +L V+ ++ Sbjct: 200 DSPLQEADAAYLWSLGLGEPHPISALHGRGTGDLLDVVMEVL------------------ 241 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 P E+ + S P R+A+VGRPNVGKS+L+N L G R++ +G TRD Sbjct: 242 ---PTESAVASALPS----GGPRRVALVGRPNVGKSSLLNALAGGERVVVNELAGTTRDP 294 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 V DTAG+R+ T + ++ ++ E +VL+D + P + Sbjct: 295 VDELIELDGRSWWFVDTAGIRRKMHRTTGADYYASIRTQAAIEKAEVALVLIDGSTPLTE 354 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKN-----LPQIGDIYINTI 356 QD+R+V V + G A+V+ NKWD+V + R K IKN L QI + Sbjct: 355 QDVRVVQQVIDAGRALVVVTNKWDLVDED-------RQKEIKNELERELVQIQWAPRINL 407 Query: 357 SGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQI 416 + +TG + ++ ++ + W+TRI T LN++L + +P P + R+ + TQ Sbjct: 408 AAKTGWHTNRIVRALDTALEGWETRIPTGQLNAFLGQLVAAHPHPLRGGKQPRILFGTQA 467 Query: 417 QSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 S PP F++F T + Y+R++ RLR F +G PI++ + Sbjct: 468 SSKPPRFVLFTT--GFLDPGYRRFIERRLRETFGFAGTPIQISVR 510 >gi|257898848|ref|ZP_05678501.1| GTP-binding protein engA [Enterococcus faecium Com15] gi|257836760|gb|EEV61834.1| GTP-binding protein engA [Enterococcus faecium Com15] Length = 436 Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 134/457 (29%), Positives = 236/457 (51%), Gaps = 31/457 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAIVG PNVGKST+FNR+ +++++V + PG+TRDR+Y + G F+++DT GI D Sbjct: 5 TIAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYAKGEWLGREFSVIDTGGI-DL 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + Q+ Q E+AI EA +I+ ++ + G+T D + L + N P+I+ NK+D Sbjct: 64 GDEPFMDQIKHQAEIAIEEADVIICVVSGREGVTDADEMVAKILYRSNKPVILAVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + YE YSL + +S H LG ++ K F ++ + I Sbjct: 124 PEMRNDIYEFYSLGLGDPYPVSGSHGLGIGDILDEAVKYFSEETEEEDDDTI-------- 175 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 + +++GRPNVGKS+LIN +LG R++ G TRD++ Sbjct: 176 ---------------------KFSLIGRPNVGKSSLINAILGEERVIVSDIEGTTRDAID 214 Query: 244 ISWNWKN-HPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + +N + DTAGMRK ++ E+ E+ +V ++M+++ + +++L+A +Q Sbjct: 215 THFVSENGQKFLMIDTAGMRKRGKVYENTEKYSVMRAMRAIDRSDIVLMVLNAEEGIREQ 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D R+ G +++ +NKWD+V + N ++D + + I +S T + Sbjct: 275 DKRVAGYAHEAGRGIIIVVNKWDLVKKETNTMRDFEQEIRDEFRYLDYAPIVFVSAVTKQ 334 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 L+ L + +++ RI+++ LN + NP PT + ++ Y TQ+ PP+ Sbjct: 335 RLERLPEMIEQVSMNQNLRISSAVLNDIIMDAVAINPTPTDKGKRLKIFYATQVAVKPPT 394 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 F++F + SY+R+L N++R F+ G IR+ Sbjct: 395 FVVFVNEEELMHFSYERFLENQIRKAFTFEGTSIRII 431 >gi|323486971|ref|ZP_08092286.1| hypothetical protein HMPREF9474_04037 [Clostridium symbiosum WAL-14163] gi|323692018|ref|ZP_08106266.1| GTP-binding protein engA [Clostridium symbiosum WAL-14673] gi|323399743|gb|EGA92126.1| hypothetical protein HMPREF9474_04037 [Clostridium symbiosum WAL-14163] gi|323503941|gb|EGB19755.1| GTP-binding protein engA [Clostridium symbiosum WAL-14673] Length = 444 Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 143/462 (30%), Positives = 226/462 (48%), Gaps = 29/462 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTLFN L +++V + PG+TRDR+Y F ++DT GI Sbjct: 8 VAVVGRPNVGKSTLFNVLAGDMISIVKDTPGVTRDRIYADCTWLDKAFTLIDTGGIEPDT 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 I QM +Q E+AI A +I+F++D + G+T D + LRK P+++ NK+D+ Sbjct: 68 KDVILAQMREQAEIAIATADVIIFIVDVRQGLTDSDSKVADMLRKSKKPVVLAVNKVDSF 127 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + YE Y+L + V ISA LG EL + F+ Sbjct: 128 QKFGNDVYEFYNLGIGDPVGISAASRLGLGELLDAVVSHFEDG----------------- 170 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 + +P RIA+VG+PNVGKS++IN+LLG NR++ +G TRD+V Sbjct: 171 ----------TGEEEEDERP-RIAIVGKPNVGKSSIINKLLGENRVIVSDIAGTTRDAVD 219 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 DTAG+R+ S+I E LE+ ++ +++ +V + +V++DA +QD Sbjct: 220 TEIIHNGTEYVFIDTAGLRRKSKIKEELERYSIIRTVTAVERADVVLVVIDAVEGVTEQD 279 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 +I G +++ +NKWD + + + K L I IS TG+ Sbjct: 280 AKIAGIAHERGKGIIIVVNKWDAIEKTDKTIYEYTNKIKMTLSFIPYAEFIFISAATGQR 339 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 ++ L + + + RI T LN + + PP+ + +L YITQ+ PP+F Sbjct: 340 INKLYEIIDMVRENQTLRIATGVLNEIMTEAVALQQPPSDKGKRLKLYYITQVSVKPPTF 399 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 +IF + SY RYL NR+R F G ++ + K Sbjct: 400 VIFVNDKELMHFSYTRYLENRIRDAFGFRGTSLKFLVRERKG 441 >gi|148377986|ref|YP_001256862.1| GTP-binding protein EngA [Mycoplasma agalactiae PG2] gi|238686669|sp|A5IZG5|DER_MYCAP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|148292032|emb|CAL59424.1| GTP binding protein engA [Mycoplasma agalactiae PG2] Length = 436 Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 146/465 (31%), Positives = 246/465 (52%), Gaps = 35/465 (7%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 IAI+G PNVGKSTLFNRLV K+ ++ + PG+TRDRLY NG N++DT GI Sbjct: 5 VIAIIGKPNVGKSTLFNRLVGKRSSITFDRPGVTRDRLYESFTWNGKEINVIDTGGIQIE 64 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 K Q+ Q ++AI EA++++F++D +A IT D I S L+K PII+V+NK+D Sbjct: 65 KK-DFQDQILIQAKIAIEEANVVIFIVDGQAAITSDDKMIYSMLQKSGKPIIVVANKLDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 I++ + Y YSL + ISA H G ++ K Sbjct: 124 -ISKFD-YGWYSLGADHVFRISALHGNGIGDVLDQCLKYL-------------------- 161 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 N S+ N+S +++++G+PN GKS+L+N + NR + +G TRD V Sbjct: 162 ----NFDSD------NVSPYFKLSIIGQPNSGKSSLLNAITHENRSIVSDIAGTTRDGVK 211 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + H IEI DTAG+ + S+I +++E +K++M S+ + +IVL+++T D Sbjct: 212 SVVELRGHKIEIIDTAGITRKSKIDDTVEHLALKRAMSSLDESDLSIVLINSTRELAHFD 271 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 RI+ +++ +NKWD+++ + + + R K + + + IS +TG Sbjct: 272 ARIIGYALENNKPIIICVNKWDLINKTQDTMNEYRKKLKNRFHFVPWVPVEFISAKTGSR 331 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNP-PPTIFNRYNRLKYITQIQSSPPS 422 +D L+ VL++ + + I S L + ++++QL P PP R N + + + ++ P+ Sbjct: 332 IDKLIDIVLKVKENLEREIKPSVLTNLIRESQLIQPAPPYNGGRLN-IYFARKTENKIPT 390 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 F+ F + SY+R+L ++R N +G PI + F++ N + Sbjct: 391 FIFFVNNKKFVHFSYQRFLEKQIRQNIEYTGCPINIIFKNKSNEF 435 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/127 (29%), Positives = 66/127 (51%), Gaps = 12/127 (9%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + ++I+G PN GKS+L N + + ++V + G TRD + + G I+DTAGI Sbjct: 172 FKLSIIGQPNSGKSSLLNAITHENRSIVSDIAGTTRDGVKSVVELRGHKIEIIDTAGITR 231 Query: 63 G-------KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPII 115 ++ ++ + M+ +++E+ L + LI+S + +D I + + N PII Sbjct: 232 KSKIDDTVEHLALKRAMS-----SLDESDLSIVLINSTRELAHFDARIIGYALENNKPII 286 Query: 116 IVSNKMD 122 I NK D Sbjct: 287 ICVNKWD 293 >gi|121607080|ref|YP_994887.1| GTP-binding protein EngA [Verminephrobacter eiseniae EF01-2] gi|166225932|sp|A1WE12|DER_VEREI RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|121551720|gb|ABM55869.1| small GTP-binding protein [Verminephrobacter eiseniae EF01-2] Length = 468 Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 145/469 (30%), Positives = 240/469 (51%), Gaps = 13/469 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG NVGKSTLFNRL + + A+V + G+TRDR YG + ++DT G Sbjct: 5 MALVGRANVGKSTLFNRLTRSRDALVADFAGLTRDRHYGNGKQGRHEYIVIDTGGFEPDV 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I ++M QT+ AI EA +++F++D +AG+T DH I +LR+ P ++ +NK + Sbjct: 65 ASGIYREMARQTQQAIAEADVVVFVVDVRAGVTAQDHDIAHYLRRAGKPCVLAANKAEGM 124 Query: 125 IAQRN--FYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 + + E Y L + +SA H G L + + P P + Sbjct: 125 QQDQGGKWAEFYELGLGTVHPVSAAHGQGIRSLVEMALE------PLSP-PDDGADAAAR 177 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 + P + + +R+AV GRPNVGKSTLIN LG RL+ G TRD++ Sbjct: 178 DLPDADGVDGVDGVDGADGRIIRLAVAGRPNVGKSTLINTWLGEERLVAFDTPGTTRDAI 237 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 ++ + E+ DTAG+R+ ++ ++E+ +V K++Q++ + ++LLDA+ +Q Sbjct: 238 TVPFERNGQRFELVDTAGLRRKGKVFAAVEKFSVVKTLQAIESAHVVLLLLDASQGVTEQ 297 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D I + +G AVVLA+NKWD D L L L + ++ IS + + Sbjct: 298 DAHIAGYILESGRAVVLAVNKWDATDDYQRQL--LERSIETRLAFLKFASLHRISAKKRQ 355 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNS-WLQKTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 GL L ++++ +K +++T L L+ Q Q+P R +++Y Q +PP Sbjct: 356 GLGPLWTAIVQAHKAATCKMSTPVLTRLLLEAVQFQSPQRQGLFR-PKMRYAHQGGMNPP 414 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +I + ++YKR+L R R F L G P+R+ ++S NPY+ + Sbjct: 415 VIVIHGNGLEHVTDTYKRFLEGRFRKEFDLVGTPLRIELKTSHNPYVDE 463 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 56/172 (32%), Positives = 86/172 (50%), Gaps = 9/172 (5%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI- 60 I +A+ G PNVGKSTL N + ++ V + PG TRD + NG F +VDTAG+ Sbjct: 198 IIRLAVAGRPNVGKSTLINTWLGEERLVAFDTPGTTRDAITVPFERNGQRFELVDTAGLR 257 Query: 61 ADGKNCSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 GK + ++ + +T AI AH++L L+D+ G+T D I ++ + +++ N Sbjct: 258 RKGKVFAAVEKFSVVKTLQAIESAHVVLLLLDASQGVTEQDAHIAGYILESGRAVVLAVN 317 Query: 120 KMD-TRIAQRNFYE------IYSLDFKEIVEISAEHDLGTSELHSVIFKIFK 164 K D T QR E + L F + ISA+ G L + I + K Sbjct: 318 KWDATDDYQRQLLERSIETRLAFLKFASLHRISAKKRQGLGPLWTAIVQAHK 369 >gi|256825342|ref|YP_003149302.1| small GTP-binding domain-containing protein [Kytococcus sedentarius DSM 20547] gi|256688735|gb|ACV06537.1| small GTP-binding protein domain/GTP-binding conserved hypothetical protein [Kytococcus sedentarius DSM 20547] Length = 527 Score = 233 bits (595), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 140/457 (30%), Positives = 234/457 (51%), Gaps = 34/457 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA-DG 63 +AIVG PNVGKSTL NR + ++ AVV + PG+TRDR+ A NGV F ++DT G D Sbjct: 94 VAIVGRPNVGKSTLVNRFLGRREAVVQDEPGVTRDRVTYPAEWNGVPFMVMDTGGWEIDA 153 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 K I K + Q E+A+ A +++F++D+ G T D + LR+ P+++V+NK+D Sbjct: 154 KG--IQKHVAQQAEVAVELADVVIFVVDATVGATDADEDVVKLLRRSRKPVLLVANKVDD 211 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + ++S+ + +SA H G+ +L + F Sbjct: 212 LHLEGEAAALWSMGLGQPWPLSALHGKGSGDLLDEVLAKF-------------------- 251 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 P E + G+ + P R+A++GRPNVGKS+L+NRL G R++ + +G TRD V Sbjct: 252 -PAEPQSDAGRV----VGGPRRVALLGRPNVGKSSLLNRLAGSERVVVDNVAGTTRDPVD 306 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 DTAG+R+ T ++ ++ ++ E +VL+DA +QD Sbjct: 307 EYIELGGRTWMFVDTAGIRRRVHQTRGVDFYASLRTQSALEKAEVAVVLIDAGEEIAEQD 366 Query: 304 LRIVDSVFNTGHAVVLALNKWDMV-SDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 +R+V V ++G A+V+A NKWD ++ + L+ + + +P + ++ GR Sbjct: 367 IRVVQQVIDSGRALVIAYNKWDTTDEERRHYLEREIERDLVQVPWAPRVNMSATRGRH-- 424 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 +D L+ ++ + + W RI T LN++L + +P P + R+ + TQ S PP Sbjct: 425 -VDKLVPALDQALESWDARIPTGRLNAFLGEVVAAHPHPVRSGKQPRILFATQASSRPPK 483 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 F++F + + SY+R+L +LR F G PI + Sbjct: 484 FVVFAS--GFLEHSYRRFLERKLRERFGFEGSPIEIS 518 >gi|325690931|gb|EGD32931.1| ribosome-associated GTPase EngA [Streptococcus sanguinis SK115] Length = 436 Score = 233 bits (595), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 140/462 (30%), Positives = 242/462 (52%), Gaps = 31/462 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAIVG PNVGKSTLFNR+ +++++V + G+TRDR+Y A F+I+DT GI D Sbjct: 5 TIAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATASWLNRKFSIIDTGGI-DD 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + +Q+ Q E+A++EA +I+F++ K GIT D + L K + PII+ NK+D Sbjct: 64 VDAPFMEQIKHQAEIAMDEADVIVFVVSGKEGITDADEYVARMLYKTHKPIILAVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + ++ Y+L + +S+ H +GT ++ I + PN E++EN Sbjct: 124 PEMRNEIFDFYALGLGDPFPVSSVHGIGTGDVLDAIV----ENLPNE--EVVEN------ 171 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV- 242 ++ +++GRPNVGKS+LIN +LG +R++ +G TRD++ Sbjct: 172 -----------------PDMIKFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAID 214 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 ++ + + + DTAGMRK ++ E+ E+ +V ++M+++ + +++L+A + Sbjct: 215 TVFTDSEGQEFTMIDTAGMRKSGKVYENTEKYSVMRAMRAIDRSDVVLMVLNAEEGIREY 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D RI G +V+ +NKWD + + ++D + I +S T + Sbjct: 275 DKRIAGFAHEAGKGIVIVVNKWDTLEKDNHTMKDWEEDIRDQFQYLSYAPIIFVSALTKQ 334 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 L L + +I++ TRI ++ LN + NP PT + ++ Y TQ+ + PP+ Sbjct: 335 RLHKLPDMIKQISQSQNTRIPSAVLNDVIMDAIAINPTPTDKGKRLKIFYATQVATKPPT 394 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 F+IF + SY R+L N++R F G PI + + K Sbjct: 395 FVIFVNEEELMHFSYLRFLENQIRKAFVFEGTPIHLIARKRK 436 >gi|296129768|ref|YP_003637018.1| ribosome-associated GTPase EngA [Cellulomonas flavigena DSM 20109] gi|296021583|gb|ADG74819.1| ribosome-associated GTPase EngA [Cellulomonas flavigena DSM 20109] Length = 515 Score = 233 bits (595), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 144/461 (31%), Positives = 235/461 (50%), Gaps = 39/461 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTL NR++ ++ AVV ++PG+TRDR+ A +G F +VDT G + Sbjct: 83 LAVVGRPNVGKSTLVNRILGRREAVVEDNPGVTRDRVSYPAEWSGRRFTLVDTGGW-EVD 141 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I K++ Q E+AI+ A +LF++D+ G T D + LR+ P+++V+NK+D Sbjct: 142 VAGIDKRVAQQAEVAIDLADAVLFVVDATVGSTDTDEQVVRLLRRSGKPVVLVANKVDGP 201 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + ++SL E ISA H GT +L + H + + Sbjct: 202 AVEADAAVLWSLGLGEPHPISALHGRGTGDLLDAAMRALP-TVSAHATPLPDG------- 253 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P R+A+VGRPNVGKS+L+N+++G R++ +G TRD V Sbjct: 254 ------------------PRRVALVGRPNVGKSSLLNKVVGSERVVVDDLAGTTRDPVDE 295 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 P DTAG+R+ T + ++ ++ E +VL+DA+ P +QD+ Sbjct: 296 LVALGGKPWVFVDTAGIRRRVHQTSGADFYASLRTQAAIEKAEVAVVLVDASQPMTEQDI 355 Query: 305 RIVDSVFNTGHAVVLALNKWD-MVSDKLNLLQ---DLRTKAIKNLPQIGDIYINTISGRT 360 RIV V + G A+V+A NKWD M D+ L+ + + ++ P++ +S RT Sbjct: 356 RIVQQVIDAGRALVVAYNKWDLMDEDRRPYLEREIEQQLVHVQWAPRV------NVSART 409 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G D L+ ++ W TRI+T LN++L + +P P + R+ + TQ + P Sbjct: 410 GWHTDRLVPALERSLDSWDTRISTGRLNAFLGELVAAHPHPLRGGKQPRILFATQASTRP 469 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 P F+IF + + Y+R++ RLR F G P+ + + Sbjct: 470 PRFVIFAS--GFLEPQYRRFIERRLRETFGFEGTPVTISVR 508 >gi|54023981|ref|YP_118223.1| GTP-binding protein EngA [Nocardia farcinica IFM 10152] gi|54015489|dbj|BAD56859.1| putative GTP-binding protein [Nocardia farcinica IFM 10152] Length = 472 Score = 233 bits (595), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 153/463 (33%), Positives = 242/463 (52%), Gaps = 42/463 (9%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI--- 60 T+A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ +A G F + DT G Sbjct: 37 TLAVVGRPNVGKSTLVNRILGRREAVVEDIPGVTRDRVSYEATWAGRRFLVQDTGGWEPD 96 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 A G ++A+Q ELA+ A IL ++D+ G T D A LR+ IP+I+V+NK Sbjct: 97 AKGLQQAVARQ----AELAMATADAILLVVDATVGATATDEAAVKKLRRSQIPVILVANK 152 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D + + ++SL E +SA H GT +L + ++ Sbjct: 153 VDDQRLEAEAAALWSLGLGEPRMVSAAHGRGTGDLLDDVLEVLP---------------- 196 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 E+P+E G P R+A+VG+PNVGKS+L+N+L G R + +G T D Sbjct: 197 --ETPREGTGGTG---------PRRVALVGKPNVGKSSLLNKLAGDERSVVHDVAGTTVD 245 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 V + DTAG+R+ E ++ ++ E I+L+DA+ P Sbjct: 246 PVDSLVELGGKIWKFVDTAGLRRKVSNASGTEFYASLRTKSALEASEVAIMLIDASQPIT 305 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSD--KLNLLQDLRTKAIKNLPQIGDIYINTISG 358 +QDLR++ V ++G A+VLA NKWD+V + +L L +++ + ++ +P + I+ +G Sbjct: 306 EQDLRVISLVADSGRALVLAFNKWDLVDEDRRLQLEKEVDRELVR-VPWAQRVNISAHTG 364 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 R + L M + LE W RI+T LN+WL++ PPP R R+ + TQ + Sbjct: 365 RAVQKLVPAMETALES---WDKRISTGRLNNWLKEVVAATPPPMRGGRLPRVLFATQAAT 421 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 PP+F++F T + Y+R+L RLR F G P+R+ + Sbjct: 422 RPPTFVLFTT--GFLEAGYRRFLERRLREEFGFDGSPVRISVR 462 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 58/195 (29%), Positives = 90/195 (46%), Gaps = 14/195 (7%) Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 ++ES E EG+ + +AVVGRPNVGKSTL+NR+LG + G+TRD Sbjct: 13 SDESDWEIADLEGEQEGEAQQAMPTLAVVGRPNVGKSTLVNRILGRREAVVEDIPGVTRD 72 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 VS W + DT G ++ L+Q +++ ++ T + ++++DAT+ Sbjct: 73 RVSYEATWAGRRFLVQDTGGWEPDAK---GLQQAVARQAELAMATADAILLVVDATVGAT 129 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKA-IKNLPQIGDIYINTISGR 359 D V + + V+L NK D D R +A L +G +S Sbjct: 130 ATDEAAVKKLRRSQIPVILVANKVD----------DQRLEAEAAALWSLGLGEPRMVSAA 179 Query: 360 TGEGLDDLMVSVLEI 374 G G DL+ VLE+ Sbjct: 180 HGRGTGDLLDDVLEV 194 >gi|227529194|ref|ZP_03959243.1| GTP-binding protein EngA [Lactobacillus vaginalis ATCC 49540] gi|227350919|gb|EEJ41210.1| GTP-binding protein EngA [Lactobacillus vaginalis ATCC 49540] Length = 437 Score = 233 bits (595), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 145/456 (31%), Positives = 244/456 (53%), Gaps = 32/456 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNR+ +++++V + PG+TRDR+Y A G FN++DT GI + Sbjct: 6 VAIVGRPNVGKSTLFNRIAGERISIVEDTPGVTRDRIYAHAEWLGKNFNLIDTGGI-EIS 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + Q+ Q E+AI+EA +I+ ++D + G+T D + L + + PI++ NK+D Sbjct: 65 DQPLLTQIRQQAEVAIDEADVIVLVVDIQNGVTDADEQVAKILYRSDKPIVLAVNKVDNP 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + Y+ YSL E +S H +G +L + NH E +N Sbjct: 125 ERRSDIYDFYSLGLGEPYPVSGVHGVGVGDLLDAVI--------NHFPETADNED----- 171 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 + +++GRPNVGKS+L+N +LG NR++ + +G TRD+++ Sbjct: 172 ----------------DGTIHFSLIGRPNVGKSSLVNAILGENRVIVSNVAGTTRDAINT 215 Query: 245 SWNWKN-HPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + K+ + DTAG+RK +I E+ E+ ++ +SM+++ + +V+L+A + D Sbjct: 216 RFTAKDGREFTMIDTAGIRKKGKIYENTERYSLMRSMRAIDDSDVVLVVLNAEEGIRELD 275 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQ-IGDIYINTISGRTGE 362 I G V++ +NKWD + +K + T I+N Q + I +S +T + Sbjct: 276 KHIAGYAHEAGCGVIIVVNKWDTIKNKDHRTMTDFTTLIRNEFQYLSYAPIIFVSAKTQQ 335 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 L+ L + ++ + RI ++ LN L NP PT R R+ Y TQ+ PP+ Sbjct: 336 RLNQLPTMIEDVYDHSRRRIQSAVLNDVLMDALAANPTPTQNGRRLRVYYGTQVAIQPPT 395 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 F+IF P+ + SY+RYL N++R F +G PIR+ Sbjct: 396 FVIFVNDPDLMHFSYQRYLENQIRRAFDFTGTPIRI 431 >gi|116670099|ref|YP_831032.1| GTP-binding protein EngA [Arthrobacter sp. FB24] gi|116610208|gb|ABK02932.1| small GTP-binding protein [Arthrobacter sp. FB24] Length = 516 Score = 233 bits (595), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 145/454 (31%), Positives = 231/454 (50%), Gaps = 30/454 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKSTL NR++ ++ AVV + PG+TRDR+ A NG F +VDT G + Sbjct: 81 LAIIGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVMYSATWNGRNFTVVDTGGW-EHD 139 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I ++ +Q E+A+ A +LF++DS G T D A+ LRK P+I+V+NK+D Sbjct: 140 ARGIHARVAEQAEMAVELADAVLFVVDSAVGATATDEAVVKMLRKSKKPVIMVANKVDDF 199 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + ++ L F E +SA H G ++L +H ++ + Sbjct: 200 AQEADSATLWGLGFGEPYPVSALHGRGVADLL------------DHVMDTL--------- 238 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 E T EG ++ P RIA++GRPNVGKS+L+N+L G R++ + +G TRD V Sbjct: 239 -PEYSTIEG---LERSGGPRRIALIGRPNVGKSSLLNKLAGSERVVVDNTAGTTRDPVDE 294 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 DTAG+R+ + + + ++ ++ E +VLL +QD+ Sbjct: 295 FIELGGRTWRFVDTAGIRRRQHMAQGADFYASLRTQSALEKAEVAVVLLAVDEVLSEQDV 354 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 RI+ +G A+VLA NKWD++ D+ L + ++L + IS TG Sbjct: 355 RILQLAIESGRALVLAFNKWDLLDDERRTY--LEREIEQDLAHVAWAPRVNISALTGWHK 412 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 D L+ ++ + W RI T LN++L + +P P + R+ + TQ S PP F+ Sbjct: 413 DRLVPALDTALESWDKRIPTGRLNAFLGELVAAHPHPVRGGKQPRILFGTQASSRPPKFV 472 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 +F T + Y+R++ RLR F G PI + Sbjct: 473 LFTT--GFLDPGYRRFITRRLRETFGFEGTPIEV 504 >gi|158339018|ref|YP_001520195.1| GTP-binding protein EngA [Acaryochloris marina MBIC11017] gi|189037135|sp|B0C1P2|DER_ACAM1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|158309259|gb|ABW30876.1| GTP-binding protein engA [Acaryochloris marina MBIC11017] Length = 453 Score = 233 bits (595), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 139/467 (29%), Positives = 242/467 (51%), Gaps = 41/467 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL NRL A+V + PG+TRDR Y A+ NG F++VDT G+ Sbjct: 6 VAIVGRPNVGKSTLVNRLTGMMDAIVHDSPGVTRDRTYRPALWNGRDFSLVDTGGLVFDD 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD-- 122 + Q +A+ EA +++ ++D +AG TP DH I +LR+++ P+++ NK + Sbjct: 66 QTEFLPFIRQQVMIALAEATVVVMVVDGQAGPTPADHEIAHWLRQQDTPVLLAVNKCESP 125 Query: 123 ----TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 T+ AQ F+E+ SLD E + +S H GT +L + + F + Sbjct: 126 EQGITQAAQ--FWEL-SLD--EPLPVSGIHGNGTGDLLDQVVEYFSE------------T 168 Query: 179 KRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 +E+ P+ +++A+VGRPNVGKS+L+N +G NR + SG T Sbjct: 169 PESEDEPE-----------------IKVALVGRPNVGKSSLLNAFVGENRSIVSPISGTT 211 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RD++ + DTAG+R+ ++ E + ++ +++R + + ++DA Sbjct: 212 RDTIDMVVRRGEQTYRFIDTAGIRRKKNVSYGPEFFGINRAFKAIRRSQVVLFVIDALDG 271 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 +QD ++ + + G A VL +NKWD V+ + + + L + + +S Sbjct: 272 VTEQDQKLAGRIIDDGRACVLVVNKWDAVTKDTYTINEFSKQIRSRLNFMEWAEMIFVSA 331 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKT-QLQNPPPTIFNRYNRLKYITQIQ 417 +TG+ ++ ++ V + ++ R+TTS +N L++ PP T R ++ Y TQ+ Sbjct: 332 QTGQRVEKILNLVDTAARQFEQRVTTSVINEVLEEAVSWHTPPTTRQGRQGKIYYGTQVS 391 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 S PP+ +F P+ ++Y+RY+ + R N +G PIR+ ++ K Sbjct: 392 SQPPTIALFVNNPDHFKDNYRRYIERQFRENLDFTGTPIRLLWRGKK 438 >gi|72080412|ref|YP_287470.1| GTP-binding protein EngA [Mycoplasma hyopneumoniae 7448] Length = 434 Score = 233 bits (595), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 141/459 (30%), Positives = 237/459 (51%), Gaps = 35/459 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG NVGKSTLFNR+ KK+++ PG+TRDR+Y N F ++DT GI + Sbjct: 6 VALVGKSNVGKSTLFNRIAGKKISITDPLPGVTRDRIYQNVTWNQHSFLLIDTGGIQI-E 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N + + Q ++A+ EA ++++++D I DH + S LRK II+V+NK++ Sbjct: 65 NENFQDLVRIQVQIALEEADILVWVLDGTKEIDSEDHFVLSLLRKSKKKIILVANKLEN- 123 Query: 125 IAQRNF-YEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 ++F ++ L F+++ ISA H G + + F +K N +NE Sbjct: 124 --NKSFDISLFELGFEKVFPISALHGHGVGDFLDELVGNFNKK-----------NFKNEI 170 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 ++ ++GRPN GKS+L+N LLG NR + G TRDS+S Sbjct: 171 F-------------------FKLTLIGRPNAGKSSLLNWLLGENRSIISEIPGTTRDSIS 211 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 W +EI DTAG+RK S++ ES++ ++ +S+ + T++LLDA F D Sbjct: 212 GFWKINGQTLEIIDTAGIRKKSKLAESVDFYAFLRAFRSLDQADLTLILLDACHDFHHFD 271 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 LRI F ++L +NKWD++ Q+ K + + IS +TGE Sbjct: 272 LRIAGYAFERNKPIILVINKWDLIQKDTRTQQEYLRKIKGKFKFLDWAPVVFISAKTGEK 331 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 + L+ + ++ + +I+T+ LN +L + Q+ P P + + ++ QI P+F Sbjct: 332 IHKLIDVIFQVKNNLEKKISTNLLNQFLMEIQMIQPHPNVNGKKVYFNFLEQIYGKIPTF 391 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 + F T N + SY+RY+ N++R F G PI++ +++ Sbjct: 392 IFFVTDKNLVHFSYQRYIENQMRKYFDFFGCPIKIIYKN 430 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 56/175 (32%), Positives = 91/175 (52%), Gaps = 15/175 (8%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 + + + ++G PN GKS+L N L+ + +++ PG TRD + G ING I+DTAGI Sbjct: 170 IFFKLTLIGRPNAGKSSLLNWLLGENRSIISEIPGTTRDSISGFWKINGQTLEIIDTAGI 229 Query: 61 ADGKNCSIAKQMNDQTEL----AINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIII 116 K +A+ ++ L ++++A L L L+D+ +D I + ++N PII+ Sbjct: 230 R--KKSKLAESVDFYAFLRAFRSLDQADLTLILLDACHDFHHFDLRIAGYAFERNKPIIL 287 Query: 117 VSNKM-----DTRIAQRNFYEIYS----LDFKEIVEISAEHDLGTSELHSVIFKI 162 V NK DTR Q +I LD+ +V ISA+ +L VIF++ Sbjct: 288 VINKWDLIQKDTRTQQEYLRKIKGKFKFLDWAPVVFISAKTGEKIHKLIDVIFQV 342 >gi|315656788|ref|ZP_07909675.1| ribosome-associated GTPase EngA [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492743|gb|EFU82347.1| ribosome-associated GTPase EngA [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 523 Score = 233 bits (595), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 146/462 (31%), Positives = 234/462 (50%), Gaps = 38/462 (8%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ A NG F++VDT G D Sbjct: 88 TLAVVGRPNVGKSTLVNRILGRREAVVLDEPGVTRDRVTYDAHWNGRNFHLVDTGGW-DV 146 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + + + DQ E+AI+ A LF++D+ G T D + LR+ P+++V+NK+D+ Sbjct: 147 GVSGLDRAVADQAEIAIDLADAALFVVDANVGATATDERLMKLLRRAGKPVLLVANKVDS 206 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + +++L + ISA H GT +L I ++ E Sbjct: 207 ERQEADAAALWNLGMGQPYPISALHGRGTGDLLDAILQVLP------------------E 248 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 S +T S+ R+A+VGRPNVGKS+L+N L G R + G TRD V Sbjct: 249 SGATQVTRAEDSTP-------RVALVGRPNVGKSSLLNSLSGAGRAVVSEVPGTTRDPVD 301 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 DTAG+R+ + + + +V ++ ++ + +VLLD P +QD Sbjct: 302 EVLELDGQQWVFVDTAGVRRRVKRSVGADYYSVLRTQAAIENADVALVLLDGGEPLTEQD 361 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSD----KLNLLQDLRTKAIKNLPQIGDIYINTISGR 359 +R+V+ V G A+VL NKWD+V + +L Q+ + P+I IS + Sbjct: 362 VRVVNQVIEAGRALVLVNNKWDLVDEYRQGELKYEQESDLAHVSWAPKI------NISAK 415 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 TG + + ++ + W RI TS LN++L + +P P + R+ Y TQ Sbjct: 416 TGWHTNRITRALRAALEGWTIRIPTSRLNAFLGELVAAHPHPLRGGKQPRILYATQAGVC 475 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 PP F++F T + Y+R++ +RLR F G P+R+ + Sbjct: 476 PPRFVLFTT--GFLDPQYRRFIEHRLRDAFGFVGTPVRIGVR 515 >gi|323350996|ref|ZP_08086653.1| ribosome-associated GTPase EngA [Streptococcus sanguinis VMC66] gi|322122720|gb|EFX94429.1| ribosome-associated GTPase EngA [Streptococcus sanguinis VMC66] Length = 436 Score = 233 bits (595), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 142/462 (30%), Positives = 242/462 (52%), Gaps = 31/462 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAIVG PNVGKSTLFNR+ +++++V + G+TRDR+Y A F+I+DT GI D Sbjct: 5 TIAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATANWLNRKFSIIDTGGI-DD 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + +Q+ Q E+A++EA +I+F++ K GIT D + L K + PII+ NK+D Sbjct: 64 VDAPFMEQIKHQAEIAMDEADVIVFVVSGKEGITDADEYVARMLYKTHKPIILAVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + ++ Y+L + +S+ H +GT ++ L+ I N NEE Sbjct: 124 PEMRNEIFDFYALGLGDPFPVSSVHGIGTGDV----------------LDAIVENLPNEE 167 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV- 242 +E +K +++GRPNVGKS+LIN +LG R++ +G TRD++ Sbjct: 168 ------VAENPDMIK-------FSLIGRPNVGKSSLINAILGEERVIASPVAGTTRDAID 214 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 ++ + + + DTAGMRK ++ E+ E+ +V ++M+++ + +++L+A + Sbjct: 215 TVFTDSEGQEFTMIDTAGMRKSGKVYENTEKYSVMRAMRAIDRSDVVLMVLNAEEGIREY 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D RI G +V+ +NKWD + + ++D + I +S T + Sbjct: 275 DKRIAGFAHEAGKGIVIVVNKWDTLEKDNHTMKDWEEDIRDQFQYLSYAPIIFVSALTKQ 334 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 L L + +I++ TRI ++ LN + NP PT + ++ Y TQ+ + PP+ Sbjct: 335 RLHKLPDMIKQISQSQNTRIPSAVLNDVIMDAIAINPTPTDKGKRLKIFYATQVATKPPT 394 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 F+IF + SY R+L N++R F+ G PI + + K Sbjct: 395 FVIFVNEEELMHFSYLRFLENQIRKAFAFEGTPIHLIARKRK 436 >gi|294628589|ref|ZP_06707149.1| ribosome-associated GTPase EngA [Streptomyces sp. e14] gi|292831922|gb|EFF90271.1| ribosome-associated GTPase EngA [Streptomyces sp. e14] Length = 494 Score = 233 bits (595), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 144/462 (31%), Positives = 236/462 (51%), Gaps = 39/462 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD-- 62 +A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ +A G F +VDT G Sbjct: 57 LAVVGRPNVGKSTLVNRIIGRREAVVEDKPGVTRDRVTYEAEWAGRRFKVVDTGGWEQDV 116 Query: 63 -GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 G + S+A Q E AI A ++F++D+K G T D A+ LRK P+++ +NK+ Sbjct: 117 LGIDASVAA----QAEYAIEAADAVVFVVDAKVGATDTDEAVVRLLRKAGKPVVLCANKV 172 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D + + + ++SL E +SA H GT ++ + ++ Sbjct: 173 DGQSGEADAAYLWSLGLGEPHPVSALHGRGTGDMLDRVLEVLP----------------- 215 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 E+P+E G I P R+A++GRPNVGKS+L+N++ G R++ +G TRD Sbjct: 216 -EAPRETFGGTG------IGGPRRVALIGRPNVGKSSLLNKVAGEERVVVDELAGTTRDP 268 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 V + DTAG+RK + + + ++ +V E +VL+DA+ Sbjct: 269 VDELIELGGKTWKFVDTAGIRKRVHLQQGADYYASLRTAAAVEKAEVAVVLIDASESVSV 328 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVSD--KLNLLQDLRTKAIKNLPQIGDIYINTISGR 359 QD RI+ G A+V+A NKWD + + + L +++ T +L QI +S R Sbjct: 329 QDQRIITMAVEAGRALVVAYNKWDTLDEERRFYLEREIET----DLAQIAWAPRVNVSAR 384 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 TG ++ L+ ++ W+TR+ T LN++L + +P P + R+ + TQ + Sbjct: 385 TGRHMERLVPAIETALAGWETRVPTGRLNAFLGELVAAHPHPIRGGKQPRILFGTQAGTR 444 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 PP F++F + I Y+R++ RLR F G PI + + Sbjct: 445 PPRFVLFAS--GFIEAGYRRFIERRLREEFGFEGTPIHLSVR 484 >gi|298346752|ref|YP_003719439.1| GTP-binding protein EngA [Mobiluncus curtisii ATCC 43063] gi|298236813|gb|ADI67945.1| GTP-binding protein EngA [Mobiluncus curtisii ATCC 43063] Length = 523 Score = 233 bits (595), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 146/462 (31%), Positives = 234/462 (50%), Gaps = 38/462 (8%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ A NG F++VDT G D Sbjct: 88 TLAVVGRPNVGKSTLVNRILGRREAVVLDEPGVTRDRVTYDAHWNGRNFHLVDTGGW-DV 146 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + + + DQ E+AI+ A LF++D+ G T D + LR+ P+++V+NK+D+ Sbjct: 147 GVSGLDRAVADQAEIAIDLADAALFVVDANVGATATDERLMKLLRRAGKPVLLVANKVDS 206 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + +++L + ISA H GT +L I ++ E Sbjct: 207 ERQEADAAALWNLGMGQPYPISALHGRGTGDLLDAILQVLP------------------E 248 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 S +T S+ R+A+VGRPNVGKS+L+N L G R + G TRD V Sbjct: 249 SGATQVTRAEDSTP-------RVALVGRPNVGKSSLLNSLSGAGRAVVSEVPGTTRDPVD 301 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 DTAG+R+ + + + +V ++ ++ + +VLLD P +QD Sbjct: 302 EVLELDGQQWVFVDTAGVRRRVKRSVGADYYSVLRTQAAIENADVALVLLDGGEPLTEQD 361 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSD----KLNLLQDLRTKAIKNLPQIGDIYINTISGR 359 +R+V+ V G A+VL NKWD+V + +L Q+ + P+I IS + Sbjct: 362 VRVVNQVIEAGRALVLVNNKWDLVDEYRQGELKYEQESDLAHVSWAPKI------NISAK 415 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 TG + + ++ + W RI TS LN++L + +P P + R+ Y TQ Sbjct: 416 TGWHTNRITRALRAALEGWTIRIPTSRLNAFLGELVAAHPHPLRGGKQPRILYATQAGVC 475 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 PP F++F T + Y+R++ +RLR F G P+R+ + Sbjct: 476 PPRFVLFTT--GFLDPQYRRFIEHRLRDAFGFVGTPVRIGVR 515 >gi|327470401|gb|EGF15857.1| ribosome-associated GTPase EngA [Streptococcus sanguinis SK330] Length = 436 Score = 233 bits (595), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 143/462 (30%), Positives = 243/462 (52%), Gaps = 31/462 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAIVG PNVGKSTLFNR+ +++++V + G+TRDR+Y A F+I+DT GI D Sbjct: 5 TIAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATASWLNRKFSIIDTGGI-DD 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + +Q+ Q E+A++EA +I+F++ K GIT D + L K + PII+ NK+D Sbjct: 64 VDAPFMEQIKHQAEIAMDEADVIVFVVSGKEGITDADEYVARMLYKTHKPIILAVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + ++ Y+L + +S+ H +GT ++ L+ I N NEE Sbjct: 124 PEMRNEIFDFYALGLGDPFPVSSVHGIGTGDV----------------LDAIVENLPNEE 167 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV- 242 VKN ++ +++GRPNVGKS+LIN +LG +R++ +G TRD++ Sbjct: 168 ------------VVKN-PDMIKFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAID 214 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 ++ + + + DTAGMRK ++ E+ E+ +V ++M+++ + +++L+A + Sbjct: 215 TVFTDSEGQEFTMIDTAGMRKSGKVYENTEKYSVMRAMRAIDRSDVVLMVLNAEEGIREY 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D RI G +V+ +NKWD + + ++D + I +S T + Sbjct: 275 DKRIAGFAHEAGKGIVIVVNKWDTLEKDNHTMKDWEEDIRDQFQYLSYAPIIFVSALTKQ 334 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 L L + +I++ TRI ++ LN + NP PT + ++ Y TQ+ + PP+ Sbjct: 335 RLHKLPDMIKQISQSQNTRIPSAVLNDVIMDAIAINPTPTDKGKRLKIFYATQVVTKPPT 394 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 F+IF + SY R+L N++R F G PI + + K Sbjct: 395 FVIFVNEEELMHFSYLRFLENQIRKAFVFEGTPIHLIARKRK 436 >gi|304389543|ref|ZP_07371506.1| ribosome-associated GTPase EngA [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304327353|gb|EFL94588.1| ribosome-associated GTPase EngA [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 523 Score = 233 bits (595), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 146/462 (31%), Positives = 234/462 (50%), Gaps = 38/462 (8%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ A NG F++VDT G D Sbjct: 88 TLAVVGRPNVGKSTLVNRILGRREAVVLDEPGVTRDRVTYDAHWNGRNFHLVDTGGW-DV 146 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + + + DQ E+AI+ A LF++D+ G T D + LR+ P+++V+NK+D+ Sbjct: 147 GVSGLDRAVADQAEIAIDLADAALFVVDANVGATATDERLMKLLRRAGKPVLLVANKVDS 206 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + +++L + ISA H GT +L I ++ E Sbjct: 207 ERQEADAAALWNLGMGQPYPISALHGRGTGDLLDAILQVLP------------------E 248 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 S +T S+ R+A+VGRPNVGKS+L+N L G R + G TRD V Sbjct: 249 SGATQVTRAEDSTP-------RVALVGRPNVGKSSLLNSLSGAGRAVVSEVPGTTRDPVD 301 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 DTAG+R+ + + + +V ++ ++ + +VLLD P +QD Sbjct: 302 EVLELDGQQWVFVDTAGVRRRVKRSVGADYYSVLRTQAAIENADVALVLLDGGEPLTEQD 361 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSD----KLNLLQDLRTKAIKNLPQIGDIYINTISGR 359 +R+V+ V G A+VL NKWD+V + +L Q+ + P+I IS + Sbjct: 362 VRVVNQVIEAGRALVLVNNKWDLVDEYRQGELKYEQESDLAHVSWAPKI------NISAK 415 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 TG + + ++ + W RI TS LN++L + +P P + R+ Y TQ Sbjct: 416 TGWHTNRITRALRAALEGWTIRIPTSRLNAFLGELVAAHPHPLRGGKQPRILYATQAGVC 475 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 PP F++F T + Y+R++ +RLR F G P+R+ + Sbjct: 476 PPRFVLFTT--GFLDPQYRRFIEHRLRDAFGFVGTPVRIGVR 515 >gi|144227450|gb|AAZ44160.2| GTP-binding protein EngA [Mycoplasma hyopneumoniae J] Length = 433 Score = 233 bits (595), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 141/459 (30%), Positives = 237/459 (51%), Gaps = 35/459 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG NVGKSTLFNR+ KK+++ PG+TRDR+Y N F ++DT GI + Sbjct: 5 VALVGKSNVGKSTLFNRIAGKKISITNPLPGVTRDRIYQNVTWNQHSFLLIDTGGIQI-E 63 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N + + Q ++A+ EA ++++++D I DH + S LRK II+V+NK++ Sbjct: 64 NENFQDLVRIQVQIALEEADILVWVLDGTKEIDSEDHFVLSLLRKSKKKIILVANKLEN- 122 Query: 125 IAQRNF-YEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 ++F ++ L F+++ ISA H G + + F +K N +NE Sbjct: 123 --NKSFDISLFELGFEKVFPISALHGHGVGDFLDELVGNFNKK-----------NFKNEI 169 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 ++ ++GRPN GKS+L+N LLG NR + G TRDS+S Sbjct: 170 F-------------------FKLTLIGRPNAGKSSLLNWLLGENRSIISEIPGTTRDSIS 210 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 W +EI DTAG+RK S++ ES++ ++ +S+ + T++LLDA F D Sbjct: 211 GFWKINGQTLEIIDTAGIRKKSKLAESVDFYAFLRAFRSLDQADLTLILLDACQDFHHFD 270 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 LRI F ++L +NKWD++ Q+ K + + IS +TGE Sbjct: 271 LRIAGYAFERNKPIILVINKWDLIQKDTRTQQEYLRKIKGKFKFLDWAPVVFISAKTGEK 330 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 + L+ + ++ + +I+T+ LN +L + Q+ P P + + ++ QI P+F Sbjct: 331 IHKLIDVIFQVKNNLEKKISTNLLNQFLMEIQMIQPHPNVNGKKVYFNFLEQIYGKIPTF 390 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 + F T N + SY+RY+ N++R F G PI++ +++ Sbjct: 391 IFFVTDKNLVHFSYQRYIENQMRKYFDFFGCPIKIIYKN 429 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 56/175 (32%), Positives = 91/175 (52%), Gaps = 15/175 (8%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 + + + ++G PN GKS+L N L+ + +++ PG TRD + G ING I+DTAGI Sbjct: 169 IFFKLTLIGRPNAGKSSLLNWLLGENRSIISEIPGTTRDSISGFWKINGQTLEIIDTAGI 228 Query: 61 ADGKNCSIAKQMNDQTEL----AINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIII 116 K +A+ ++ L ++++A L L L+D+ +D I + ++N PII+ Sbjct: 229 R--KKSKLAESVDFYAFLRAFRSLDQADLTLILLDACQDFHHFDLRIAGYAFERNKPIIL 286 Query: 117 VSNKM-----DTRIAQRNFYEIYS----LDFKEIVEISAEHDLGTSELHSVIFKI 162 V NK DTR Q +I LD+ +V ISA+ +L VIF++ Sbjct: 287 VINKWDLIQKDTRTQQEYLRKIKGKFKFLDWAPVVFISAKTGEKIHKLIDVIFQV 341 >gi|144575266|gb|AAZ53447.2| GTP-binding protein EngA [Mycoplasma hyopneumoniae 7448] Length = 433 Score = 233 bits (594), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 141/459 (30%), Positives = 237/459 (51%), Gaps = 35/459 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG NVGKSTLFNR+ KK+++ PG+TRDR+Y N F ++DT GI + Sbjct: 5 VALVGKSNVGKSTLFNRIAGKKISITDPLPGVTRDRIYQNVTWNQHSFLLIDTGGIQI-E 63 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N + + Q ++A+ EA ++++++D I DH + S LRK II+V+NK++ Sbjct: 64 NENFQDLVRIQVQIALEEADILVWVLDGTKEIDSEDHFVLSLLRKSKKKIILVANKLEN- 122 Query: 125 IAQRNF-YEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 ++F ++ L F+++ ISA H G + + F +K N +NE Sbjct: 123 --NKSFDISLFELGFEKVFPISALHGHGVGDFLDELVGNFNKK-----------NFKNEI 169 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 ++ ++GRPN GKS+L+N LLG NR + G TRDS+S Sbjct: 170 F-------------------FKLTLIGRPNAGKSSLLNWLLGENRSIISEIPGTTRDSIS 210 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 W +EI DTAG+RK S++ ES++ ++ +S+ + T++LLDA F D Sbjct: 211 GFWKINGQTLEIIDTAGIRKKSKLAESVDFYAFLRAFRSLDQADLTLILLDACHDFHHFD 270 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 LRI F ++L +NKWD++ Q+ K + + IS +TGE Sbjct: 271 LRIAGYAFERNKPIILVINKWDLIQKDTRTQQEYLRKIKGKFKFLDWAPVVFISAKTGEK 330 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 + L+ + ++ + +I+T+ LN +L + Q+ P P + + ++ QI P+F Sbjct: 331 IHKLIDVIFQVKNNLEKKISTNLLNQFLMEIQMIQPHPNVNGKKVYFNFLEQIYGKIPTF 390 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 + F T N + SY+RY+ N++R F G PI++ +++ Sbjct: 391 IFFVTDKNLVHFSYQRYIENQMRKYFDFFGCPIKIIYKN 429 Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 56/175 (32%), Positives = 91/175 (52%), Gaps = 15/175 (8%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 + + + ++G PN GKS+L N L+ + +++ PG TRD + G ING I+DTAGI Sbjct: 169 IFFKLTLIGRPNAGKSSLLNWLLGENRSIISEIPGTTRDSISGFWKINGQTLEIIDTAGI 228 Query: 61 ADGKNCSIAKQMNDQTEL----AINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIII 116 K +A+ ++ L ++++A L L L+D+ +D I + ++N PII+ Sbjct: 229 R--KKSKLAESVDFYAFLRAFRSLDQADLTLILLDACHDFHHFDLRIAGYAFERNKPIIL 286 Query: 117 VSNKM-----DTRIAQRNFYEIYS----LDFKEIVEISAEHDLGTSELHSVIFKI 162 V NK DTR Q +I LD+ +V ISA+ +L VIF++ Sbjct: 287 VINKWDLIQKDTRTQQEYLRKIKGKFKFLDWAPVVFISAKTGEKIHKLIDVIFQV 341 >gi|308234454|ref|ZP_07665191.1| small GTP-binding protein [Atopobium vaginae DSM 15829] gi|328944301|ref|ZP_08241765.1| ribosome-associated GTPase EngA [Atopobium vaginae DSM 15829] gi|327491220|gb|EGF22995.1| ribosome-associated GTPase EngA [Atopobium vaginae DSM 15829] Length = 438 Score = 233 bits (594), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 149/460 (32%), Positives = 239/460 (51%), Gaps = 33/460 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL NRL K A+V G+TRDR Y NG F ++DT GI K Sbjct: 6 VAIVGRPNVGKSTLVNRLATTKSAIVHESRGVTRDRSYHACDWNGREFTLIDTGGIESLK 65 Query: 65 NCS-IAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + A + +Q L +EA +I+ ++D G+T D + +R+ + P+ +V NK+D Sbjct: 66 SKDRFALGIREQALLGCDEADVIVMVVDGSIGLTDEDETVAQIVRRMHKPVFLVVNKIDN 125 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + L E ISA H T +L I P H EE Sbjct: 126 PDEVLDSWNYLKLGLGEPRAISATHGTATGDLLDDIVNAL----PVH-----------EE 170 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 +P+ +S + IAV+GRPNVGKS+L+N+L R L +G TRD++ Sbjct: 171 APQPKDSS------------VAIAVIGRPNVGKSSLVNKLSRSQRSLVADYAGTTRDAID 218 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 I++++K I + DTAGMRK +++ E +E ++ + +Q++ + ++++DA +QD Sbjct: 219 ITFDYKGQTIRLVDTAGMRKKTQVHEDVEYYSMVRGLQAMDKADVCLLVIDAHEGMTEQD 278 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 ++ + G A+VL LNK D++ D+ + + L + AI+ I +I TG+ Sbjct: 279 QKLAGMAIDRGCALVLVLNKTDLLRDEQDRQKLLDSFAIRLTFATWAEQI-SICALTGKS 337 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLK--YITQIQSSPP 421 ++ + + L + + I TS LN+ + T+++ TI ++ R K Y+TQ PP Sbjct: 338 VNKALDAALRAYRTHASSIKTSQLNNLV--TKIREAGHTIVHKNRRFKIHYVTQTGYCPP 395 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 F FC + + ++Y R+L NRLR F L G PIR+ F+ Sbjct: 396 EFTFFCNAKDLLDDAYMRFLENRLRETFDLQGTPIRLKFR 435 >gi|50842690|ref|YP_055917.1| GTP-binding protein EngA [Propionibacterium acnes KPA171202] gi|289428509|ref|ZP_06430193.1| ribosome-associated GTPase EngA [Propionibacterium acnes J165] gi|295130771|ref|YP_003581434.1| ribosome-associated GTPase EngA [Propionibacterium acnes SK137] gi|50840292|gb|AAT82959.1| putative GTP binding protein [Propionibacterium acnes KPA171202] gi|289158203|gb|EFD06422.1| ribosome-associated GTPase EngA [Propionibacterium acnes J165] gi|291376501|gb|ADE00356.1| ribosome-associated GTPase EngA [Propionibacterium acnes SK137] gi|313772016|gb|EFS37982.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL074PA1] gi|313807708|gb|EFS46195.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL087PA2] gi|313810216|gb|EFS47937.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL083PA1] gi|313818745|gb|EFS56459.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL046PA2] gi|313820515|gb|EFS58229.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL036PA1] gi|313822679|gb|EFS60393.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL036PA2] gi|313825388|gb|EFS63102.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL063PA1] gi|313830547|gb|EFS68261.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL007PA1] gi|313833583|gb|EFS71297.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL056PA1] gi|314924995|gb|EFS88826.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL036PA3] gi|314960338|gb|EFT04440.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL002PA2] gi|314973547|gb|EFT17643.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL053PA1] gi|314975769|gb|EFT19864.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL045PA1] gi|314978673|gb|EFT22767.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL072PA2] gi|314983751|gb|EFT27843.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL005PA1] gi|314987933|gb|EFT32024.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL005PA2] gi|314989743|gb|EFT33834.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL005PA3] gi|315080449|gb|EFT52425.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL078PA1] gi|315084779|gb|EFT56755.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL027PA2] gi|315085464|gb|EFT57440.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL002PA3] gi|315088479|gb|EFT60455.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL072PA1] gi|315095821|gb|EFT67797.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL038PA1] gi|315105878|gb|EFT77854.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL030PA1] gi|327326374|gb|EGE68164.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL096PA2] gi|327330445|gb|EGE72194.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL097PA1] gi|327331752|gb|EGE73489.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL096PA3] gi|327443529|gb|EGE90183.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL013PA2] gi|327445732|gb|EGE92386.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL043PA2] gi|327448285|gb|EGE94939.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL043PA1] gi|328754740|gb|EGF68356.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL020PA1] gi|328760937|gb|EGF74502.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL099PA1] gi|332675613|gb|AEE72429.1| GTP-binding protein EngA [Propionibacterium acnes 266] Length = 456 Score = 233 bits (594), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 141/458 (30%), Positives = 233/458 (50%), Gaps = 40/458 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ A +G F +VDT G A Sbjct: 24 VAVVGRPNVGKSTLVNRILGRRAAVVQDVPGVTRDRVSYDAEWSGRQFVLVDTGGWAS-D 82 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +A + +Q ELAI+ A +LF++D+ G T D A+ LR+ P+++ +NK+D Sbjct: 83 ASGMAAMIAEQAELAISTADAVLFVVDANVGTTDEDEAVVQVLRQSRKPVVVAANKVDNA 142 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + +++L E +SA H G+ +L + + Sbjct: 143 RGESEAATMWNLGLGEPHPVSAMHGRGSGDLLDALIAVL--------------------- 181 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 PKE ++S ++ P R+A+VG+PNVGKS+L+NR+ NR++ SG T D V Sbjct: 182 PKE------QASYESSDGPRRVAIVGKPNVGKSSLLNRIARQNRVVVSDISGTTVDPVDE 235 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + DTAG+RK + E ++ ++ E +V++DA+ QDL Sbjct: 236 LVTVGGTVYQFIDTAGLRKRVKEASGHEYYASLRTQAAIERAEVCVVVIDASESISDQDL 295 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLR----TKAIKNLPQIGDIYINTISGRT 360 RI+ V N G A+V+A NKWD+ ++ + +A P++ IS Sbjct: 296 RILTMVENAGRAMVIAYNKWDLTDEERRRYLEREIERDVQAYSWAPRV------NISALN 349 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G +D L ++ + W+TRI+T LN++L + +P P + R+ + TQ + P Sbjct: 350 GRNVDKLEKAIETAAEGWETRISTGKLNAFLGRLAAAHPHPVRGGKQPRILFGTQAHNCP 409 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 P+F +F + + Y R++I RLR +F +G P+ + Sbjct: 410 PTFALFTS--GVFDQGYVRFIIRRLREDFGFAGSPVHV 445 >gi|332358244|gb|EGJ36072.1| ribosome-associated GTPase EngA [Streptococcus sanguinis SK355] Length = 436 Score = 233 bits (594), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 140/462 (30%), Positives = 242/462 (52%), Gaps = 31/462 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAIVG PNVGKSTLFNR+ +++++V + G+TRDR+Y A F+I+DT GI D Sbjct: 5 TIAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATANWLNRKFSIIDTGGI-DD 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + +Q+ Q E+A++EA +I+F++ K GIT D + L K + PII+ NK+D Sbjct: 64 VDAPFMEQIKHQAEIAMDEADVIVFVVSGKEGITDADEYVARMLYKTHKPIILAVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + ++ Y+L + +S+ H +GT ++ I + PN E++EN Sbjct: 124 PEMRNEIFDFYALGLGDPFPVSSVHGIGTGDVLDAIV----ENLPNE--EVVEN------ 171 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV- 242 ++ +++GRPNVGKS+LIN +LG +R++ +G TRD++ Sbjct: 172 -----------------PDMIKFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAID 214 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 ++ + + + DTAGMRK ++ E+ E+ +V ++M+++ + +++L+A + Sbjct: 215 TVFTDSEGQEFTMIDTAGMRKSGKVYENTEKYSVMRAMRAIDRSDVVLMVLNAEEGIREY 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D RI G +V+ +NKWD + + ++D + I +S T + Sbjct: 275 DKRIAGFAHEAGKGIVIVVNKWDTLEKDNHTMKDWEEDIRDQFQYLSYAPIIFVSALTKQ 334 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 L L + +I++ TRI ++ LN + NP PT + ++ Y TQ+ + PP+ Sbjct: 335 RLHKLPDMIKQISQSQNTRIPSAVLNDVIMDAIAINPTPTDKGKRLKIFYATQVATKPPT 394 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 F+IF + SY R+L N++R F G PI + + K Sbjct: 395 FVIFVNEEELMHFSYLRFLENQIRKAFVFEGTPIHLIARKRK 436 >gi|227551166|ref|ZP_03981215.1| GTP-binding protein EngA [Enterococcus faecium TX1330] gi|257896210|ref|ZP_05675863.1| GTP-binding protein engA [Enterococcus faecium Com12] gi|293379548|ref|ZP_06625690.1| ribosome-associated GTPase EngA [Enterococcus faecium PC4.1] gi|293570249|ref|ZP_06681318.1| GTP-binding protein EngA [Enterococcus faecium E980] gi|227179728|gb|EEI60700.1| GTP-binding protein EngA [Enterococcus faecium TX1330] gi|257832775|gb|EEV59196.1| GTP-binding protein engA [Enterococcus faecium Com12] gi|291609656|gb|EFF38917.1| GTP-binding protein EngA [Enterococcus faecium E980] gi|292641857|gb|EFF60025.1| ribosome-associated GTPase EngA [Enterococcus faecium PC4.1] Length = 436 Score = 233 bits (594), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 134/456 (29%), Positives = 235/456 (51%), Gaps = 31/456 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAIVG PNVGKST+FNR+ +++++V + PG+TRDR+Y + G F+++DT GI D Sbjct: 5 TIAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYAKGEWLGREFSVIDTGGI-DL 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + Q+ Q E+AI EA +I+ ++ + G+T D + L + N P+I+ NK+D Sbjct: 64 GDEPFMDQIKHQAEIAIEEADVIICVVSGREGVTDADEMVAKILYRSNKPVILAVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + YE YSL + +S H LG ++ K F ++ + I Sbjct: 124 PEMRNDIYEFYSLGLGDPYPVSGSHGLGIGDILDEAVKYFSEETEEEDDDTI-------- 175 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 + +++GRPNVGKS+LIN +LG R++ G TRD++ Sbjct: 176 ---------------------KFSLIGRPNVGKSSLINAILGEERVIVSDIEGTTRDAID 214 Query: 244 ISW-NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + + + DTAGMRK ++ E+ E+ +V ++M+++ + +++L+A +Q Sbjct: 215 THFVSESGQKFLMIDTAGMRKRGKVYENTEKYSVMRAMRAIDRSDIVLMVLNAEEGIREQ 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D R+ G V++ +NKWD+V + N ++D + + I +S T + Sbjct: 275 DKRVAGYAHEAGRGVIIVVNKWDLVKKETNTMRDFEQEIRDEFRYLDYAPIVFVSAVTKQ 334 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 L+ L + +++ RI+++ LN + NP PT + ++ Y TQ+ PP+ Sbjct: 335 RLERLPEMIEQVSMNQNLRISSAVLNDIIMDAVAINPTPTDKGKRLKIFYATQVAVKPPT 394 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 F++F + SY+R+L N++R F+ G IR+ Sbjct: 395 FVVFVNEEELMHFSYERFLENQIRKAFTFEGTSIRI 430 >gi|291087651|ref|ZP_06347028.2| ribosome-associated GTPase EngA [Clostridium sp. M62/1] gi|291074566|gb|EFE11930.1| ribosome-associated GTPase EngA [Clostridium sp. M62/1] Length = 446 Score = 233 bits (594), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 140/462 (30%), Positives = 231/462 (50%), Gaps = 29/462 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTLFN L + +++V + PG+TRDR+Y F ++DT GI Sbjct: 10 VAVVGCPNVGKSTLFNVLAGEMISIVKDTPGVTRDRIYADCTWLDKAFTLIDTGGIEPDS 69 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I QM +Q E+AI A +I+F++D + G+T D + LRK P+I+ NK+D+ Sbjct: 70 RDIILAQMREQAEIAIATADVIIFIVDVRQGLTDSDSKVADMLRKSRKPVILAVNKVDSF 129 Query: 125 IAQRN-FYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 N YE Y+L + + ISA LG EL + F + Sbjct: 130 AKFGNDVYEFYNLGIGDPIPISAASRLGLGELLDAVVAHFPED----------------- 172 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 ++ +P RIA+VG+PNVGKS+++N+LLG NR++ + +G TRD+V Sbjct: 173 ----------TGEEEDDDRP-RIAIVGKPNVGKSSIVNKLLGENRVIVSNIAGTTRDAVD 221 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 DTAG+R+ ++I E LE+ ++ +++ +V + +V++DAT +QD Sbjct: 222 TEIVHNGTEYVFIDTAGLRRKNKIKEELERYSIIRTVTAVERADVVLVVIDATEGVTEQD 281 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 +I + G +++ +NKWD + + + K L + +S +TG+ Sbjct: 282 AKIAGIAHDRGKGIIIVVNKWDAIEKNDKTIYEYTNKIKTILSFVPYAEYVFVSAQTGQR 341 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 L+ L + + + RI T LN + + PP+ + +L Y+TQ+ PP+F Sbjct: 342 LNKLYDLIDMVRENQTMRIQTGVLNEIMTEAVALQQPPSDKGKRLKLYYMTQVAVKPPTF 401 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 ++F + SY RYL NR+R F G ++ + K Sbjct: 402 VVFVNDKELMHFSYTRYLENRIRDAFGFRGTALKFIIRERKG 443 >gi|257887716|ref|ZP_05667369.1| GTP-binding protein engA [Enterococcus faecium 1,141,733] gi|257823770|gb|EEV50702.1| GTP-binding protein engA [Enterococcus faecium 1,141,733] Length = 436 Score = 233 bits (594), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 134/456 (29%), Positives = 235/456 (51%), Gaps = 31/456 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAIVG PNVGKST+FNR+ +++++V + PG+TRDR+Y + G F+++DT GI D Sbjct: 5 TIAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYAKGEWLGREFSVIDTGGI-DL 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + Q+ Q E+AI EA +I+ ++ + G+T D + L + N P+I+ NK+D Sbjct: 64 GDEPFMDQIKHQAEIAIEEADVIICVVSGREGVTDADEMVAKILYRSNKPVILAVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + YE YSL + +S H LG ++ K F ++ + I Sbjct: 124 PEMRNDIYEFYSLGLGDPYPVSGSHGLGIGDILDEAVKYFTEETEEEDDDTI-------- 175 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 + +++GRPNVGKS+LIN +LG R++ G TRD++ Sbjct: 176 ---------------------KFSLIGRPNVGKSSLINAILGEERVIVSDIEGTTRDAID 214 Query: 244 ISW-NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + + + DTAGMRK ++ E+ E+ +V ++M+++ + +++L+A +Q Sbjct: 215 THFVSESGQKFLMIDTAGMRKRGKVYENTEKYSVMRAMRAIDRSDIVLMVLNAEEGIREQ 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D R+ G V++ +NKWD+V + N ++D + + I +S T + Sbjct: 275 DKRVAGYAHEAGRGVIIVVNKWDLVKKETNTMRDFEQEIRDEFRYLDYAPIVFVSAVTKQ 334 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 L+ L + +++ RI+++ LN + NP PT + ++ Y TQ+ PP+ Sbjct: 335 RLERLPEMIEQVSMNQNLRISSAVLNDIIMDAVAINPTPTDKGKRLKIFYATQVAVKPPT 394 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 F++F + SY+R+L N++R F+ G IR+ Sbjct: 395 FVVFVNEEELMHFSYERFLENQIRKAFTFEGTSIRI 430 >gi|332362231|gb|EGJ40031.1| ribosome-associated GTPase EngA [Streptococcus sanguinis SK1056] Length = 436 Score = 233 bits (594), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 142/462 (30%), Positives = 242/462 (52%), Gaps = 31/462 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAIVG PNVGKSTLFNR+ +++++V + G+TRDR+Y A F+I+DT GI D Sbjct: 5 TIAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATASWLNRKFSIIDTGGI-DD 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + +Q+ Q E+A++EA +I+F++ K GIT D + L K + PII+ NK+D Sbjct: 64 VDAPFMEQIKHQAEIAMDEADVIVFVVSGKEGITDADEYVARMLYKTHKPIILAVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + ++ Y+L + +S+ H +GT ++ L+ I N NEE Sbjct: 124 PEMRNEIFDFYALGLGDPFPVSSVHGIGTGDV----------------LDAIVENLPNEE 167 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV- 242 +E +K +++GRPNVGKS+LIN +LG +R++ +G TRD++ Sbjct: 168 ------VAENPDMIK-------FSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAID 214 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 ++ + + + DTAGMRK ++ E+ E+ +V ++M+++ + +++L+A + Sbjct: 215 TVFTDSEGQEFTMIDTAGMRKSGKVYENTEKYSVMRAMRAIDRSDVVLMVLNAEEGIREY 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D RI G +V+ +NKWD + + ++D + I +S T + Sbjct: 275 DKRIAGFAHEAGKGIVIVVNKWDTLDKDNHTMKDWEEDIRDQFQYLSYAPIIFVSALTKQ 334 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 L L + +I++ TRI ++ LN + NP PT + ++ Y TQ+ + PP+ Sbjct: 335 RLHKLPDMIKQISQSQNTRIPSAVLNDVIMDAIAINPTPTDKGKRLKIFYATQVATKPPT 394 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 F+IF + SY R+L N++R F G PI + + K Sbjct: 395 FVIFVNEEELMHFSYLRFLENQIRKAFVFEGTPIHLIARKRK 436 >gi|297180284|gb|ADI16503.1| predicted GTPases [uncultured bacterium HF4000_05M23] Length = 440 Score = 233 bits (594), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 146/463 (31%), Positives = 233/463 (50%), Gaps = 31/463 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD-G 63 IAI+G PNVGKSTLFNRL +++A+V + PG TRDR+ A + +VDTAG+ D Sbjct: 6 IAIIGRPNVGKSTLFNRLAGRRIAIVSDIPGTTRDRVSIDAEWGRHRYLLVDTAGVEDRP 65 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 N + + Q E+A+N+A I+F +D G+T D +R+ P+++ +NK D+ Sbjct: 66 HNALLWDDIKKQVEIALNQADGIIFTVDVNEGVTDADEDAADMVRRACRPVVVAANKTDS 125 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + Y+ YSL E ISA HD G +L +F P P M Sbjct: 126 LAREDLIYDFYSLGLGEPHPISAYHDSGIGDLMEAMFAAMP---PFEPESM--------- 173 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 G S+ R+A+ GRPN GKS L N L G +R + G TRD++ Sbjct: 174 ---------GPHSI-------RVAIAGRPNAGKSALFNALAGEDRAIVSPVPGTTRDTLD 217 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 ++++ I DTAG+R+ + +E+ + +++ ++ +I++LDAT QD Sbjct: 218 SQFDFEGTRITFLDTAGLRRRGKAEAGIEKYSAIRTIGAIERSYVSILVLDATEFVTAQD 277 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKN-LPQIGDIYINTISGRTGE 362 I + + A V+ +NKWD+ D L L + + +KN I D+ + S TG Sbjct: 278 THIGGYIDDASRAAVVVVNKWDLAYD-LKLDRAEAEEEVKNRFKFIPDVPVVFTSALTGR 336 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 G++ L+ +++ + + +I + ++ + NP P +R R+ Q ++SPP+ Sbjct: 337 GVNKLLPTIINVYGEFTKQIPRAEVSRAIFDAMGDNPMPGFGSRRPRIFRSVQSRTSPPT 396 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 F P I SY+RYL NRLR NF G P++M F S ++ Sbjct: 397 FEFTARNPELIHFSYRRYLENRLRENFGFIGSPLKMSFVSRED 439 >gi|282853835|ref|ZP_06263172.1| ribosome-associated GTPase EngA [Propionibacterium acnes J139] gi|282583288|gb|EFB88668.1| ribosome-associated GTPase EngA [Propionibacterium acnes J139] gi|314981499|gb|EFT25593.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL110PA3] gi|315092162|gb|EFT64138.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL110PA4] Length = 456 Score = 233 bits (594), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 141/458 (30%), Positives = 233/458 (50%), Gaps = 40/458 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ A +G F +VDT G A Sbjct: 24 VAVVGRPNVGKSTLVNRILGRRAAVVQDVPGVTRDRVSYDAEWSGRQFVLVDTGGWAS-D 82 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +A + +Q ELAI+ A +LF++D+ G T D A+ LR+ P+++ +NK+D Sbjct: 83 ASGMAAMIAEQAELAISTADAVLFVVDANVGTTDEDEAVVQVLRQSRKPVVVAANKVDNA 142 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + +++L E +SA H G+ +L + + Sbjct: 143 RGESEAATMWNLGLGEPHPVSAMHGRGSGDLLDALIAVL--------------------- 181 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 PKE ++S ++ P R+A+VG+PNVGKS+L+NR+ NR++ SG T D V Sbjct: 182 PKE------QASYESSDGPRRVAIVGKPNVGKSSLLNRIARQNRVVVSDISGTTVDPVDE 235 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + DTAG+RK + E ++ ++ E +V++DA+ QDL Sbjct: 236 LVTVGGTVYQFIDTAGLRKRVKEASGHEYYASLRTQAAIERAEVCVVVIDASESISDQDL 295 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLR----TKAIKNLPQIGDIYINTISGRT 360 RI+ V N G A+V+A NKWD+ ++ + +A P++ IS Sbjct: 296 RILTMVENAGRAMVIAYNKWDLTDEERRRYLEREIERDVQAYSWAPRV------NISALN 349 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G +D L ++ + W+TRI+T LN++L + +P P + R+ + TQ + P Sbjct: 350 GRNVDKLEKAIETAAEGWETRISTGKLNAFLGRLAAAHPHPVRGGKQPRILFGTQAHNCP 409 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 P+F +F + + Y R++I RLR +F +G P+ + Sbjct: 410 PTFALFTS--GVFDQGYVRFIIRRLREDFGFAGSPVHV 445 >gi|154508812|ref|ZP_02044454.1| hypothetical protein ACTODO_01321 [Actinomyces odontolyticus ATCC 17982] gi|153798446|gb|EDN80866.1| hypothetical protein ACTODO_01321 [Actinomyces odontolyticus ATCC 17982] Length = 517 Score = 233 bits (594), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 148/465 (31%), Positives = 237/465 (50%), Gaps = 46/465 (9%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI---A 61 +A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ A G F +VDT G Sbjct: 84 LAVVGRPNVGKSTLVNRILGRREAVVQDTPGVTRDRVSYPAEWAGRDFTLVDTGGWEIDV 143 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 G + S+A +Q E+A++ A ++ ++D+ G+T D I LR K PII+ +NK+ Sbjct: 144 KGLDRSVA----EQAEIAVDLADAVVLVLDATVGVTASDERIVEMLRAKKKPIILAANKV 199 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D+ + + + ++SL E ISA H GT +L V+ ++ Sbjct: 200 DSPLQEADAAYLWSLGLGEPHPISALHGRGTGDLLDVVLEVL------------------ 241 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 P E+ + S P R+A+VGRPNVGKS+L+N L G R++ +G TRD Sbjct: 242 ---PTESAVASPLPS----GGPRRVALVGRPNVGKSSLLNALAGGERVVVNELAGTTRDP 294 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 V DTAG+R+ T + ++ ++ E +VL+D + P + Sbjct: 295 VDELIELDGRSWWFVDTAGIRRKMHRTTGADYYASIRTQAAIEKAEVALVLIDGSTPLTE 354 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKN-----LPQIGDIYINTI 356 QD+R+V V + G A+V+ NKWD+V + R K IKN L QI + Sbjct: 355 QDVRVVQQVIDAGRALVVVTNKWDLVDED-------RQKEIKNELERELVQIQWAPRINL 407 Query: 357 SGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQI 416 + +TG + ++ ++ + W+TRI T LN++L + +P P + R+ + TQ Sbjct: 408 AAKTGWHTNRIVRALDTALEGWETRIPTGQLNAFLGQLVAAHPHPLRGGKQPRILFGTQA 467 Query: 417 QSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 S PP F++F T + Y+R++ RLR F +G PI++ + Sbjct: 468 SSKPPRFVLFTT--GFLDPGYRRFIERRLRETFGFAGTPIQISVR 510 >gi|322386141|ref|ZP_08059775.1| ribosome-associated GTPase EngA [Streptococcus cristatus ATCC 51100] gi|321269833|gb|EFX52759.1| ribosome-associated GTPase EngA [Streptococcus cristatus ATCC 51100] Length = 436 Score = 233 bits (594), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 140/462 (30%), Positives = 242/462 (52%), Gaps = 31/462 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAIVG PNVGKSTLFNR+ +++++V + G+TRDR+Y A F+I+DT GI D Sbjct: 5 TIAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATADWLNRKFSIIDTGGI-DD 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + +Q+ Q E+A++EA +I+F++ K GIT D + L K + PII+ NK+D Sbjct: 64 VDAPFMEQIKHQAEIAMDEADVIVFVVSGKEGITDADEYVARMLYKTHKPIILAVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + Y+ Y+L + +S+ H +GT ++ I + P+ E++EN Sbjct: 124 PEMRNEIYDFYALGLGDPFPVSSVHGIGTGDVLDAIV----ENLPHE--EVVEN------ 171 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV- 242 ++ +++GRPNVGKS+LIN +LG +R++ +G TRD++ Sbjct: 172 -----------------PDMIKFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAID 214 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 ++ + + + DTAGMRK ++ E+ E+ +V ++M+++ + +++L+A + Sbjct: 215 TVFTDSEGQEFTMIDTAGMRKSGKVYENTEKYSVMRAMRAIDRSDVVLMVLNAEEGIREY 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D RI G +V+ +NKWD + + ++D + I +S T + Sbjct: 275 DKRIAGFAHEAGKGIVIVVNKWDTLEKDNHTMKDWEEDIRDQFQYLSYAPIIFVSALTKQ 334 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 L L + +I++ TRI ++ LN + NP PT + ++ Y TQ+ + PP+ Sbjct: 335 RLHKLPDMIKQISQSQNTRIPSAVLNDVIMDAIAINPTPTDKGKRLKIFYATQVATKPPT 394 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 F+IF + SY R+L N++R F G PI + + K Sbjct: 395 FVIFVNEEELMHFSYLRFLENQIRKAFVFEGTPIHLIARKRK 436 >gi|116620165|ref|YP_822321.1| GTP-binding protein EngA [Candidatus Solibacter usitatus Ellin6076] gi|116223327|gb|ABJ82036.1| small GTP-binding protein [Candidatus Solibacter usitatus Ellin6076] Length = 441 Score = 233 bits (594), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 142/454 (31%), Positives = 225/454 (49%), Gaps = 35/454 (7%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+ IVG PNVGKSTLFNR+ ++ A+VG+ PGITRDRL+G A +G F ++DT GI Sbjct: 7 TVVIVGRPNVGKSTLFNRITGQRRAIVGDEPGITRDRLHGAAEHDGRHFELIDTGGIVVH 66 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 I Q+ Q E A+ A I+FL+D +A IT D + L+K P+ + NK+D Sbjct: 67 DQEYIPAQILKQAEFALKAADHIIFLVDGRAEITGSDRDLAQMLKKLGKPVSLAVNKIDA 126 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 ++ Q E Y L ++ ISAEH G + + E R E+ Sbjct: 127 QVRQDLVNEFYGLGIADVFAISAEHGTGVDAMLD---------------RVTEGFARGEK 171 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 E+ +G +++A++GRPNVGKSTL+N L G +R + +G TRD+V Sbjct: 172 PTAESTEPKG----------IKVAIIGRPNVGKSTLLNALTGADRAIVSPIAGTTRDAVD 221 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + + DTAG+R+ + + E+ +V + + +R +++LDAT D Sbjct: 222 ETVSHDGQEYVFVDTAGIRRKGKTHDMAEKLSVVMARRHIRMAHVVLLVLDATEGVVALD 281 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIY-INTISGRTGE 362 I G AV++ +NKWD V + ++ + I++ + D + +S ++G Sbjct: 282 TTIAGYAHEGGRAVIICVNKWDEVKGQAAQKKNEFEQQIRDEFKFLDYAPVVFLSAKSGS 341 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 + L + EI + R+TT LN ++ + ++ YITQ PP+ Sbjct: 342 NVPKLFRLIKEIYESASKRVTTGELNRFVDHLHFEE---------RKIFYITQHSIRPPA 392 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 F +F + S++RYL+N+LR F G PI Sbjct: 393 FAVFTDKGPALHFSHERYLVNQLRKQFGFKGTPI 426 >gi|160880522|ref|YP_001559490.1| small GTP-binding protein [Clostridium phytofermentans ISDg] gi|189037143|sp|A9KLK7|DER_CLOPH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|160429188|gb|ABX42751.1| small GTP-binding protein [Clostridium phytofermentans ISDg] Length = 441 Score = 233 bits (594), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 149/470 (31%), Positives = 238/470 (50%), Gaps = 47/470 (10%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTLFN L ++++V + PG+TRDR+Y F +VDT GI Sbjct: 6 VAVVGRPNVGKSTLFNALAGDRISIVKDTPGVTRDRIYADITWLDKQFTLVDTGGIEPES 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + M +Q E+AI A +I+F++D + G+ D+ + LR+ P+I+V NK+D Sbjct: 66 KDMMLTYMREQAEIAIATADVIMFVVDVRQGLLDADNKVADMLRRSGKPVILVVNKVD-- 123 Query: 125 IAQRNF-------YEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 NF YE Y+L + V +SA LG +L ++ F + Sbjct: 124 ----NFDKFMPDVYEFYNLGIGDPVPVSAASMLGFGDLLDLVVGHFPPE----------- 168 Query: 178 NKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGI 237 + +P RIA+VG+PNVGKS++IN+LLG NR++ +G Sbjct: 169 ----------------ALEEEEDERP-RIAIVGKPNVGKSSIINKLLGENRVIVSDVAGT 211 Query: 238 TRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATI 297 TRD++ + W DTAG+R+ S+I E LE+ ++ +++ +V + +V++DA Sbjct: 212 TRDAIDTAVTWNKKDYVFIDTAGLRRKSKIKEELERFSIIRTVSAVERADVVVVVIDANE 271 Query: 298 PFEKQDLRIVDSVFNTGHAVVLALNKWDMV--SDKLNLLQDLRTKAIKNLPQIGDIYINT 355 +QD +I G +++A+NKWD + DK R + I + +I Sbjct: 272 GVTEQDAKIAGIAHERGKGIIIAVNKWDAIEKDDKTIYKYTNRIREILSFLPYAEIMF-- 329 Query: 356 ISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNS-WLQKTQLQNPPPTIFNRYNRLKYIT 414 +S +TG+ + L S+ + + RI+T LN ++ T LQ PP R RL YIT Sbjct: 330 LSAKTGQRVTKLFDSIEVVIQNRNLRISTGVLNEIMMEATALQQPPSDKGKRL-RLYYIT 388 Query: 415 QIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 Q+ PP+F+IF + SY RY+ N++R F SG ++ + K Sbjct: 389 QVAVKPPTFVIFVNDKELMHYSYTRYIENKIREAFGFSGTSLKFFIRERK 438 >gi|239623754|ref|ZP_04666785.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239521785|gb|EEQ61651.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 442 Score = 233 bits (594), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 147/463 (31%), Positives = 238/463 (51%), Gaps = 31/463 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFN + +++V + PG+TRDR+Y + F ++DT GI Sbjct: 6 VAIVGRPNVGKSTLFNVIAGDTISIVKDTPGVTRDRIYADCTWLDMNFTLIDTGGIEPDT 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I QM +Q E+AI+ A +I+F++D + G+ D + LRK P+++ NK+D+ Sbjct: 66 KDIILSQMREQAEIAISTADVIIFIVDVRQGLVDSDAKVADMLRKSRKPVVLAVNKVDS- 124 Query: 125 IAQ--RNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 IA+ + YE Y+L E V +SA LG +L + K F E IE + + Sbjct: 125 IAKFGNDVYEFYNLGIGEPVPVSAASRLGIGDLLDEVVKHFDG-------EKIEEEE--D 175 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 + P RIAVVG+PNVGKS++IN+LLG NR++ +G TRD+V Sbjct: 176 DRP-------------------RIAVVGKPNVGKSSIINKLLGENRVIVSDIAGTTRDAV 216 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + P DTAG+R+ SRI E LE+ ++ +++ +V + +V++DA +Q Sbjct: 217 DTEIVYNGTPYVFIDTAGLRRKSRIKEELERYSIIRTVTAVERADIVVVVIDAVEGVTEQ 276 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D +I G V++A+NKWD + + + K + L + IS TG+ Sbjct: 277 DAKIAGIAHERGKGVIVAVNKWDAIEKTDKTIYEYTNKIKETLSFMPYAEYIFISAATGQ 336 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 L L + + + R+ T LN + + PP+ + ++ Y+TQ+ PP+ Sbjct: 337 RLPKLFEMIDAVRQNQNLRVATGVLNEIMTEAVAMQQPPSDKGKRLKIYYMTQVAVKPPT 396 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 F++F + SY RYL N++R +F G ++ + K+ Sbjct: 397 FVVFVNDKELMHFSYTRYLENQIRNSFGFKGTSLKFLIRERKS 439 >gi|6681650|dbj|BAA88823.1| phosphoglycerate dehydrogenase [Streptococcus mutans] Length = 436 Score = 233 bits (594), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 137/462 (29%), Positives = 241/462 (52%), Gaps = 31/462 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AIVG PNVGKS LFNR+ +++++V + G+TRDR+Y +A F+I+DT GI D Sbjct: 5 TVAIVGRPNVGKSALFNRIAGERISIVEDVEGVTRDRIYTKAEWLNRQFSIIDTGGI-DD 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + +Q+ Q ++A+ EA +I+F++ +K GIT D + L + + P+I+ NK+D Sbjct: 64 VDAPFMEQIKHQADIAMTEADVIVFVVSAKEGITDADEYVAKILYRTHKPVILAVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + Y+ Y+L + +S+ H +GT ++ I Sbjct: 124 PEMRSAIYDFYALGLGDPYPVSSAHGIGTGDVLDAIV----------------------- 160 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 +N+ +E + +I ++ +++GRPNVGKS+LIN +LG +R++ +G TRD++ Sbjct: 161 ---DNLPAEAQEESSDI---IKFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAID 214 Query: 244 ISW-NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 ++ + + + DTAGMRK ++ E+ E+ +V ++M+++ + +++L+A + Sbjct: 215 TTFTDEEGQEFTMIDTAGMRKSGKVYENTEKYSVMRAMRAIDRSDIVLMVLNAEEGIREY 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D RI G +V+ +NKWD + + T N I I +S T + Sbjct: 275 DKRIAGFAHEAGKGIVVVVNKWDAIKKDNRTVAQWETDIRDNFQYIPYAPIVFVSAVTKQ 334 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 L L + ++++ TRI +S LN + NP PT + ++ Y TQ+ PP+ Sbjct: 335 RLHKLPDVIKQVSQSQNTRIPSSVLNDVVMDAVAINPTPTDKGKRLKIFYATQVSVKPPT 394 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 F+IF + SY R+L N++R F G PIR+ + K Sbjct: 395 FVIFVNEEELMHFSYLRFLENQIRQAFVFEGTPIRLIARKRK 436 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 64/130 (49%), Gaps = 13/130 (10%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAII-NGVIFNIVDTAGI 60 I +++G PNVGKS+L N ++ + + G TRD + G F ++DTAG+ Sbjct: 174 IIKFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTTFTDEEGQEFTMIDTAGM 233 Query: 61 -------ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIP 113 + + S+ + M AI+ + ++L +++++ GI YD I F + Sbjct: 234 RKSGKVYENTEKYSVMRAMR-----AIDRSDIVLMVLNAEEGIREYDKRIAGFAHEAGKG 288 Query: 114 IIIVSNKMDT 123 I++V NK D Sbjct: 289 IVVVVNKWDA 298 >gi|327474514|gb|EGF19919.1| ribosome-associated GTPase EngA [Streptococcus sanguinis SK408] Length = 436 Score = 233 bits (594), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 140/462 (30%), Positives = 241/462 (52%), Gaps = 31/462 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAIVG PNVGKSTLFNR+ +++++V + G+TRDR+Y A F+I+DT GI D Sbjct: 5 TIAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATASWLNRKFSIIDTGGI-DD 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + +Q+ Q E+A++EA +I+F++ K GIT D + L K + PII+ NK+D Sbjct: 64 VDAPFMEQIKHQAEIAMDEADVIVFVVSGKEGITDADEYVARMLYKTHKPIILAVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + ++ Y+L + +S+ H +GT ++ I + PN E++EN Sbjct: 124 PEMRNEIFDFYALGLGDPFPVSSVHGIGTGDVLDAIV----ENLPNE--EVVEN------ 171 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV- 242 ++ +++GRPNVGKS+LIN +LG R++ +G TRD++ Sbjct: 172 -----------------PDMIKFSLIGRPNVGKSSLINAILGEERVIASPVAGTTRDAID 214 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 ++ + + + DTAGMRK ++ E+ E+ +V ++M+++ + +++L+A + Sbjct: 215 TVFTDSEGQEFTMIDTAGMRKSGKVYENTEKYSVMRAMRAIDRSDVVLMVLNAEEGIREY 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D RI G +V+ +NKWD + + ++D + I +S T + Sbjct: 275 DKRIAGFAHEAGKGIVIVVNKWDTLEKDNHTMKDWEEDIRDQFQYLSYAPIIFVSALTKQ 334 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 L L + +I++ TRI ++ LN + NP PT + ++ Y TQ+ + PP+ Sbjct: 335 RLHKLPDMIKQISQSQNTRIPSAVLNDVIMDAIAINPTPTDKGKRLKIFYATQVATKPPT 394 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 F+IF + SY R+L N++R F G PI + + K Sbjct: 395 FVIFVNEEELMHFSYLRFLENQIRKAFVFEGTPIHLIARKRK 436 >gi|293568055|ref|ZP_06679393.1| GTP-binding protein EngA [Enterococcus faecium E1071] gi|291589276|gb|EFF21086.1| GTP-binding protein EngA [Enterococcus faecium E1071] Length = 436 Score = 233 bits (594), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 134/457 (29%), Positives = 235/457 (51%), Gaps = 31/457 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAIVG PNVGKST+FNR+ +++++V + PG+TRDR+Y + G F+++DT GI D Sbjct: 5 TIAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYAKGEWLGREFSVIDTGGI-DL 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + Q+ Q E+AI EA +I+ ++ + G+T D + L + N P+I+ NK+D Sbjct: 64 GDEPFMDQIKHQAEIAIEEADVIICVVSGREGVTDADEMVAKILYRSNKPVILAVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + YE YSL + IS H LG ++ K F ++ + I Sbjct: 124 PEMRNDIYEFYSLGLGDPYPISGSHGLGIGDILDEAVKYFSEETEEEDDDTI-------- 175 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 + +++GRPNVGKS+LIN +LG R++ G TRD++ Sbjct: 176 ---------------------KFSLIGRPNVGKSSLINAILGEERVIVSDIEGTTRDAID 214 Query: 244 ISW-NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + + + DTAGMRK ++ E+ E+ +V ++M+++ + +++L+A +Q Sbjct: 215 THFVSESGQKFLMIDTAGMRKRGKVYENTEKYSVMRAMRAIDRSDIVLMVLNAEEGIREQ 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D R+ G +++ +NKWD+V + N ++D + + I +S T + Sbjct: 275 DKRVAGYAHEAGRGIIIVVNKWDLVKKETNTMRDFEQEIRDEFRYLDYAPIVFVSAVTKQ 334 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 L+ L + +++ RI+++ LN + NP PT + ++ Y TQ+ PP+ Sbjct: 335 RLERLPEMIEQVSMNQNLRISSAVLNDIIMDAVAINPTPTDKGKRLKIFYATQVAVKPPT 394 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 F++F + SY+R+L N++R F+ G IR+ Sbjct: 395 FVVFVNEEELMHFSYERFLENQIRKAFTFEGTSIRII 431 >gi|313884154|ref|ZP_07817920.1| ribosome biogenesis GTPase Der [Eremococcus coleocola ACS-139-V-Col8] gi|312620601|gb|EFR32024.1| ribosome biogenesis GTPase Der [Eremococcus coleocola ACS-139-V-Col8] Length = 438 Score = 233 bits (593), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 140/458 (30%), Positives = 233/458 (50%), Gaps = 30/458 (6%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 I +A+VG PNVGKST+FNRLV ++++V + PG+TRDR+Y G + ++DT GI Sbjct: 4 IPVVALVGRPNVGKSTIFNRLVGDRVSIVEDFPGVTRDRVYATGKWLGNDYRLIDTGGI- 62 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 + + + KQ+ Q E+AI+EA +I+ L + + G+T D I S L K + PII+ NK Sbjct: 63 ELDDQPLMKQIRYQAEIAIDEADVIVMLANGQEGLTREDEVIASMLLKTDKPIILAVNKT 122 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D + + ++ Y+L E +S H G +L I F Sbjct: 123 DNPEQRMDIFDFYALGLGEPHPVSGAHGTGLGDLLDQIVASF------------------ 164 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 PK+ T +S+K + +GRPNVGKS+L+N +L R++ + G TR++ Sbjct: 165 ---PKDLATHYEDTSIK-------FSFIGRPNVGKSSLVNAVLKEERVIVSNIEGTTREA 214 Query: 242 VSISW-NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 V + + + + DTAG+RK ++ E+ E+ +V +S+ ++ + ++LDA Sbjct: 215 VDSKFISETGKEMTVIDTAGIRKKGKVYENTEKYSVMRSLAAIDRSDVVCIVLDAETGIR 274 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 QD + + G +++ +NKWD + + +D K + I +S +T Sbjct: 275 DQDKHVAGYAYEAGKGIIIVVNKWDALKKDNDSFKDFTDKVRSEFRYLNFAPILFVSAKT 334 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G+ LD L + +I + R+ +S LN + NP PT R ++ Y+TQ+ P Sbjct: 335 GQRLDQLSPLIEQIYENRNRRVQSSLLNDVVMDAVATNPTPTDKGRRLKIYYMTQVAVGP 394 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 P+F++F + SYKR+L N+LR F G PI + Sbjct: 395 PTFVVFVNDAELMHFSYKRFLENQLREVFYFEGTPIHL 432 >gi|322411159|gb|EFY02067.1| GTP-binding protein EngA [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 436 Score = 233 bits (593), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 136/462 (29%), Positives = 237/462 (51%), Gaps = 31/462 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AIVG PNVGKSTLFNR+ +++++V N G+TRDR+Y F+++DT GI D Sbjct: 5 TVAIVGRPNVGKSTLFNRIAGERISIVENVEGVTRDRIYATGEWLNRQFSLIDTGGI-DD 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + +Q+ +Q ++A+ EA +I+F++ K G+T D ++ L + N P+I+ NK+D Sbjct: 64 VDAPFMEQIKNQAQIAMEEADVIVFVVSGKEGVTDADEYVSKILYRTNTPVILAVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + Y+ YSL + +S+ H +GT ++ I + N P+E +E N Sbjct: 124 PEMRNDIYDFYSLGLGDPYPVSSVHGIGTGDILDAIVE-------NLPVEEVEEN----- 171 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 +R +++GRPNVGKS+LIN +LG +R++ +G TRD++ Sbjct: 172 -----------------DDIIRFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAID 214 Query: 244 ISW-NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + + + DTAGMRK +I E+ E+ +V ++M+++ + +++++A + Sbjct: 215 THFTDADGQEFTMIDTAGMRKSGKIYENTEKYSVMRAMRAIDRSDVVLMVINAEEGIREY 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D RI G +++ +NKWD + + + + I +S T + Sbjct: 275 DKRIAGFAHEAGKGMIIVVNKWDTIDKDNHTVAQWEADIRDQFQFLAYAPIIFVSALTKQ 334 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 L+ L + I+ RI ++ LN + NP PT + ++ Y TQ+ PP+ Sbjct: 335 RLNKLPELIKRISDSQNKRIPSAVLNDVIMDAIAINPTPTDKGKRLKIFYATQVAVKPPT 394 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 F+IF + SY R+L N++R FS G PI + + K Sbjct: 395 FVIFVNEEELMHFSYLRFLENQIRAAFSFEGTPIHLIARKRK 436 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 68/132 (51%), Gaps = 17/132 (12%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRL---YGQAIINGVIFNIVDTA 58 I +++G PNVGKS+L N ++ + + G TRD + + A +G F ++DTA Sbjct: 174 IIRFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTHFTDA--DGQEFTMIDTA 231 Query: 59 GI-------ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKN 111 G+ + + S+ + M AI+ + ++L +I+++ GI YD I F + Sbjct: 232 GMRKSGKIYENTEKYSVMRAMR-----AIDRSDVVLMVINAEEGIREYDKRIAGFAHEAG 286 Query: 112 IPIIIVSNKMDT 123 +IIV NK DT Sbjct: 287 KGMIIVVNKWDT 298 >gi|262282140|ref|ZP_06059909.1| GTP-binding protein engA [Streptococcus sp. 2_1_36FAA] gi|262262594|gb|EEY81291.1| GTP-binding protein engA [Streptococcus sp. 2_1_36FAA] Length = 436 Score = 233 bits (593), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 143/462 (30%), Positives = 240/462 (51%), Gaps = 31/462 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAIVG PNVGKSTLFNR+ +++++V N G+TRDR+Y A F+I+DT GI D Sbjct: 5 TIAIVGRPNVGKSTLFNRIAGERISIVENVEGVTRDRIYATADWLNRKFSIIDTGGI-DD 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + +Q+ Q E+A++EA I+F++ K GIT D + L K + PII+ NK+D Sbjct: 64 VDAPFMEQIKHQAEIAMDEADAIVFVVSGKEGITDADEYVARMLYKTHKPIILAVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + ++ Y+L + +S+ H +GT ++ L+ I N NEE Sbjct: 124 PEMRNEIFDFYALGLGDPFPVSSVHGIGTGDV----------------LDAIVENLPNEE 167 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV- 242 +E +K +++GRPNVGKS+LIN +LG +R++ +G TRD++ Sbjct: 168 ------VAENPDMIK-------FSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAID 214 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 ++ + + + DTAGMRK ++ E+ E+ +V ++M+++ + +++L+A + Sbjct: 215 TVFTDSEGQEFTMIDTAGMRKSGKVYENTEKYSVMRAMRAIDRSDVVLMVLNAEEGIREY 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D RI G +V+ +NKWD + ++D + I +S T + Sbjct: 275 DKRIAGFAHEAGKGIVIVVNKWDTLEKDNYTMKDWEADIRDQFQYLSYAPIIFVSALTKQ 334 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 L L + +I++ TRI ++ LN + NP PT + ++ Y TQ+ + PP+ Sbjct: 335 RLHKLPDMIKQISQSQNTRIPSAVLNDVIMDAIAINPTPTDKGKRLKIFYATQVATKPPT 394 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 F+IF + SY R+L N++R F G PI + + K Sbjct: 395 FVIFVNEEELMHFSYLRFLENQIRKAFVFEGTPIHLIARKRK 436 >gi|311087490|gb|ADP67570.1| GTP-binding protein EngA [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] Length = 453 Score = 233 bits (593), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 164/479 (34%), Positives = 261/479 (54%), Gaps = 39/479 (8%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAII--NGVIFNIVDTA 58 MI I ++G NVGKSTLFN L K + A+V N+PGITRDR YG + N I ++DTA Sbjct: 1 MIPIIVLIGRTNVGKSTLFNVLTKTRDALVANYPGITRDRQYGYCKLQSNKKII-LIDTA 59 Query: 59 GIADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVS 118 G+ D K I KQ QT +AI EAHLILFL++++ G+ P ++ I+ +RK I+V Sbjct: 60 GL-DIKLNEIEKQAQAQTLIAIKEAHLILFLVNARDGLMPQEYEISKNIRKYQKKTILVI 118 Query: 119 NKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL-HSVIFKIFKQKYPNHPLEMIEN 177 NK+D E YSL F++I +ISA H+ G + L + + +K+ ++ EN Sbjct: 119 NKIDGINEASKINEFYSLGFEKIQKISASHNQGINTLINRYLIPWISEKFKK---KITEN 175 Query: 178 NKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGI 237 ++ E +K I+ +++A +GRPNVGKSTLIN +L R++T + G Sbjct: 176 LYKDTE-------------LKKIA--IKVAFIGRPNVGKSTLINGILKEERMITSNTPGT 220 Query: 238 TRDSVS--ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDA 295 T DS+S I +N++N+ + DTAG K + ++ ++ K++Q++ ++++DA Sbjct: 221 TLDSISTPIKYNYENYT--LIDTAGASKKKKKINDFQRFSIIKTLQTIEKSNVILLIIDA 278 Query: 296 TIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNL--PQIGDIY- 352 ++ QDL + D + ++G +V+ +NK D L + K IK L ++ +Y Sbjct: 279 SLQTCHQDLSLADFIIHSGKGIVVVVNKCD-------LFNSVELKKIKELIKSKLKFLYF 331 Query: 353 --INTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRL 410 I+ IS +G+ L S+ E + K +I+TS L + ++ PP I R +L Sbjct: 332 SKIHFISALYKKGIFQLFTSIKESYEDSKRKISTSTLIKTMHIAIKKHQPPIIKGRRIKL 391 Query: 411 KYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIK 469 KY S+PP +I + YKRYLIN + G PI++ F+ ++NPY+K Sbjct: 392 KYAHLGSSNPPKIIIHGNQVKYLSLPYKRYLINFFYKTLKIKGTPIQIQFKDNENPYVK 450 >gi|182414655|ref|YP_001819721.1| small GTP-binding protein [Opitutus terrae PB90-1] gi|177841869|gb|ACB76121.1| small GTP-binding protein [Opitutus terrae PB90-1] Length = 501 Score = 233 bits (593), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 147/480 (30%), Positives = 240/480 (50%), Gaps = 54/480 (11%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M T+AIVG PNVGKS LFNRL +K++++V + PG+TRD + G + ++DT GI Sbjct: 1 MNRTVAIVGRPNVGKSRLFNRLARKRISIVHDQPGVTRDVVSTDIADGG--YTLLDTGGI 58 Query: 61 A-DGKN--CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIV 117 G + ++ +Q E AI A LILF++D GI+ D I LRK P+ +V Sbjct: 59 GYRGSDTPAALTAASEEQVEFAIATAALILFVVDGLDGISGLDAKIAERLRKSGKPVRLV 118 Query: 118 SNKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 NK D + + E+Y L E + +SAEH G SEL + I +E + Sbjct: 119 VNKADFDDEKIDLAEVYRLGLGEPLRVSAEHGRGESELRAAI------------IEALGT 166 Query: 178 NKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGI 237 EE+ ++ KPL + +GRPNVGKS+L NRLL +RL+ G Sbjct: 167 APEIEEA-------------RDPQKPLGVCFIGRPNVGKSSLSNRLLQSDRLIVSEVPGT 213 Query: 238 TRDSVSISWNW-----KNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVL 292 TRD++ + + + K++P + DTAG++ +++ +E + +S+ +++ + ++ Sbjct: 214 TRDAIELPFEFIGRDGKSYPFRLIDTAGIKAATKLASPVEYFSRLRSLDAIKETDVVFLV 273 Query: 293 LDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVS---------DKLNLLQDLRTKAIK 343 LDA +QD I +VL +NKWD+V + +D R K K Sbjct: 274 LDALEGVTQQDKAIAGEAVKEHKPIVLVVNKWDLVKRAFKERGAFEPYKSERDYREKYEK 333 Query: 344 NL-------PQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQL 396 L P I+++ +SG +D ++ + +++N++ ++ T+ LN ++ Sbjct: 334 ALFDRLYFTPGSPVIFVSAVSGYE---VDRMLNAAVKVNRMMDAKLPTAKLNRAIEFLTE 390 Query: 397 QNPPPTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 + PPP I + R+ Y TQ + P +FC ++ E Y+RYL L F L+G PI Sbjct: 391 RTPPPAIGGKRFRVYYATQTGNRPFRIRLFCNREEQLSEQYRRYLEAGLVDEFGLAGCPI 450 >gi|157150518|ref|YP_001449828.1| GTP-binding protein EngA [Streptococcus gordonii str. Challis substr. CH1] gi|189037167|sp|A8AVL8|DER_STRGC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|157075312|gb|ABV09995.1| GTP-binding protein engA [Streptococcus gordonii str. Challis substr. CH1] Length = 436 Score = 233 bits (593), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 142/462 (30%), Positives = 241/462 (52%), Gaps = 31/462 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAIVG PNVGKSTLFNR+ +++++V + G+TRDR+Y A F+I+DT GI D Sbjct: 5 TIAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATADWLNRKFSIIDTGGI-DD 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + +Q+ Q E+A++EA +I+F++ K GIT D + L K + PII+ NK+D Sbjct: 64 VDAPFMEQIKHQAEIAMDEADVIVFVVSGKEGITDADEYVARMLYKTHKPIILAVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + ++ Y+L + +S+ H +GT ++ L+ I N NEE Sbjct: 124 PEMRNEIFDFYALGLGDPFPVSSVHGIGTGDV----------------LDAIVENLPNEE 167 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV- 242 +E +K +++GRPNVGKS+LIN +LG R++ +G TRD++ Sbjct: 168 ------VAENPDMIK-------FSLIGRPNVGKSSLINAILGEERVIASPVAGTTRDAID 214 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 ++ + + + DTAGMRK ++ E+ E+ +V ++M+++ + +++L+A + Sbjct: 215 TVFTDSEGQEFTMIDTAGMRKSGKVYENTEKYSVMRAMRAIDRSDVVLMVLNAEEGIREY 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D RI G +V+ +NKWD + + ++D + I +S T + Sbjct: 275 DKRIAGFAHEAGKGIVIVVNKWDTLEKDNHTMKDWEADIRDQFQYLSYAPIIFVSALTKQ 334 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 L L + +I++ TRI ++ LN + NP PT + ++ Y TQ+ + PP+ Sbjct: 335 RLHKLPDMIKQISQSQNTRIPSAVLNDVIMDAIAINPTPTDKGKRLKIFYATQVATKPPT 394 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 F+IF + SY R+L N++R F G PI + + K Sbjct: 395 FVIFVNEEELMHFSYLRFLENQIRKAFVFEGTPIHLIARKRK 436 >gi|314923527|gb|EFS87358.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL001PA1] gi|314966574|gb|EFT10673.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL082PA2] gi|315092905|gb|EFT64881.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL060PA1] gi|315103573|gb|EFT75549.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL050PA2] Length = 456 Score = 233 bits (593), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 141/458 (30%), Positives = 233/458 (50%), Gaps = 40/458 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ A +G F +VDT G A Sbjct: 24 VAVVGRPNVGKSTLVNRILGRRAAVVQDVPGVTRDRVSYDAEWSGRQFVLVDTGGWAS-D 82 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +A + +Q ELAI+ A +LF++D+ G T D A+ LR+ P+++ +NK+D Sbjct: 83 ASGMAAMIAEQAELAISTADAVLFVVDANVGTTDEDEAVVQVLRQSRKPVVVAANKVDNT 142 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + +++L E +SA H G+ +L + + Sbjct: 143 RGESEAATMWNLGLGEPHPVSAMHGRGSGDLLDALIAVL--------------------- 181 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 PKE ++S ++ P R+A+VG+PNVGKS+L+NR+ NR++ SG T D V Sbjct: 182 PKE------QASYESSDGPRRVAIVGKPNVGKSSLLNRIARQNRVVVSDISGTTVDPVDE 235 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + DTAG+RK + E ++ ++ E +V++DA+ QDL Sbjct: 236 LVTVGGTVYQFIDTAGLRKRVKEASGHEYYASLRTQAAIERAEVCVVVIDASESISDQDL 295 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLR----TKAIKNLPQIGDIYINTISGRT 360 RI+ V N G A+V+A NKWD+ ++ + +A P++ IS Sbjct: 296 RILTMVENAGRAMVIAYNKWDLTDEERRRYLEREIERDVQAYSWAPRV------NISALN 349 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G +D L ++ + W+TRI+T LN++L + +P P + R+ + TQ + P Sbjct: 350 GRNVDKLEKAIETAAEGWETRISTGKLNAFLGRLAAAHPHPVRGGKQPRILFGTQAHNCP 409 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 P+F +F + + Y R++I RLR +F +G P+ + Sbjct: 410 PTFALFTS--GVFDQGYVRFIIRRLREDFGFAGSPVHV 445 >gi|327327397|gb|EGE69173.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL103PA1] Length = 456 Score = 233 bits (593), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 141/458 (30%), Positives = 233/458 (50%), Gaps = 40/458 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ A +G F +VDT G A Sbjct: 24 VAVVGRPNVGKSTLVNRILGRRAAVVQDVPGVTRDRVSYDAEWSGRQFVLVDTGGWAS-D 82 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +A + +Q ELAI+ A +LF++D+ G T D A+ LR+ P+++ +NK+D Sbjct: 83 ASGMAAMIAEQAELAISTADAVLFVVDANVGTTDEDEAVVQVLRQSRKPVVVAANKVDNT 142 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + +++L E +SA H G+ +L + + Sbjct: 143 RGESEAATMWNLGLGEPHPVSAMHGRGSGDLLDALIAVL--------------------- 181 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 PKE ++S ++ P R+A+VG+PNVGKS+L+NR+ NR++ SG T D V Sbjct: 182 PKE------QASYESSEGPRRVAIVGKPNVGKSSLLNRIARQNRVVVSDISGTTVDPVDE 235 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + DTAG+RK + E ++ ++ E +V++DA+ QDL Sbjct: 236 LVTVGGTVYQFIDTAGLRKRVKEASGHEYYASLRTQAAIERAEVCVVVIDASESISDQDL 295 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLR----TKAIKNLPQIGDIYINTISGRT 360 RI+ V N G A+V+A NKWD+ ++ + +A P++ IS Sbjct: 296 RILTMVENAGRAMVIAYNKWDLTDEERRRYLEREIERDVQAYSWAPRV------NISALN 349 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G +D L ++ + W+TRI+T LN++L + +P P + R+ + TQ + P Sbjct: 350 GRNVDKLEKAIETAAEGWETRISTGKLNAFLGRLAAAHPHPVRGGKQPRILFGTQAHNCP 409 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 P+F +F + + Y R++I RLR +F +G P+ + Sbjct: 410 PTFALFTS--GVFDQGYVRFIIRRLREDFGFAGSPVHV 445 >gi|325687138|gb|EGD29161.1| ribosome-associated GTPase EngA [Streptococcus sanguinis SK72] Length = 436 Score = 233 bits (593), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 142/462 (30%), Positives = 242/462 (52%), Gaps = 31/462 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAIVG PNVGKSTLFNR+ +++++V + G+TRDR+Y A F+I+DT GI D Sbjct: 5 TIAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATANWLNRKFSIIDTGGI-DD 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + +Q+ Q E+A++EA +I+F++ K GIT D + L K + PII+ NK+D Sbjct: 64 VDAPFMEQIKHQAEIAMDEADVIVFVVSGKEGITDADEYVARMLYKTHKPIILAVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + ++ Y+L + + +S+ H +GT ++ L+ I N NEE Sbjct: 124 PEMRNEIFDFYALGLGDPLPVSSVHGIGTGDV----------------LDAIVENLPNEE 167 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV- 242 +E +K +++GRPNVGKS+LIN +LG R++ +G TRD++ Sbjct: 168 ------VAENPDMIK-------FSLIGRPNVGKSSLINAILGEERVIASPVAGTTRDAID 214 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 ++ + + + DTAGMRK ++ E+ E+ +V ++M+++ + +++L+A + Sbjct: 215 TVFTDSEGQEFTMIDTAGMRKSGKVYENTEKYSVMRAMRAIDRSDVVLMVLNAEEGIREY 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D RI G +V+ +NKWD + + ++D + I +S T + Sbjct: 275 DKRIAGFAHEAGKGIVIVVNKWDTLDKDNHTMKDWEEDIRDQFQYLSYAPIIFVSALTKQ 334 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 L L + +I++ TRI ++ LN + NP PT + ++ Y TQ+ + PP+ Sbjct: 335 RLHKLPDMIKQISQSQNTRIPSAVLNDVIMDAIAINPTPTDKGKRLKIFYATQVATKPPT 394 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 F+IF + SY R+L N++R F G PI + + K Sbjct: 395 FVIFVNEEELMHFSYLRFLENQIRKAFVFEGTPIHLIARKRK 436 >gi|125718602|ref|YP_001035735.1| GTP-binding protein EngA [Streptococcus sanguinis SK36] gi|166225867|sp|A3CPT0|DER_STRSV RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|125498519|gb|ABN45185.1| GTP-binding protein, putative [Streptococcus sanguinis SK36] Length = 436 Score = 233 bits (593), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 140/462 (30%), Positives = 241/462 (52%), Gaps = 31/462 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAIVG PNVGKSTLFNR+ +++++V + G+TRDR+Y A F+I+DT GI D Sbjct: 5 TIAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATANWLNRKFSIIDTGGI-DD 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + +Q+ Q E+A++EA +I+F++ K GIT D + L K + PII+ NK+D Sbjct: 64 VDAPFMEQIKHQAEIAMDEADVIVFVVSGKEGITDADEYVARMLYKTHKPIILAVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + ++ Y+L + +S+ H +GT ++ I + PN E++EN Sbjct: 124 PEMRNEIFDFYALGLGDPFPVSSVHGIGTGDVLDAIV----ENLPNE--EVVEN------ 171 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV- 242 ++ +++GRPNVGKS+LIN +LG R++ +G TRD++ Sbjct: 172 -----------------PDMIKFSLIGRPNVGKSSLINAILGEERVIASPVAGTTRDAID 214 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 ++ + + + DTAGMRK ++ E+ E+ +V ++M+++ + +++L+A + Sbjct: 215 TVFTDSEGQEFTMIDTAGMRKSGKVYENTEKYSVMRAMRAIDRSDVVLMVLNAEEGIREY 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D RI G +V+ +NKWD + + ++D + I +S T + Sbjct: 275 DKRIAGFAHEAGKGIVIVVNKWDTLEKDNHTMKDWEEDIRDQFQYLSYAPIIFVSALTKQ 334 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 L L + +I++ TRI ++ LN + NP PT + ++ Y TQ+ + PP+ Sbjct: 335 RLHKLPDMIKQISQSQNTRIPSAVLNDVIMDAIAINPTPTDKGKRLKIFYATQVATKPPT 394 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 F+IF + SY R+L N++R F G PI + + K Sbjct: 395 FVIFVNEEELMHFSYLRFLENQIRKAFVFEGTPIHLIARKRK 436 >gi|257877995|ref|ZP_05657648.1| GTP-binding protein engA [Enterococcus faecium 1,230,933] gi|257881218|ref|ZP_05660871.1| GTP-binding protein engA [Enterococcus faecium 1,231,502] gi|257884882|ref|ZP_05664535.1| GTP-binding protein engA [Enterococcus faecium 1,231,501] gi|257889806|ref|ZP_05669459.1| GTP-binding protein engA [Enterococcus faecium 1,231,410] gi|257892257|ref|ZP_05671910.1| GTP-binding protein engA [Enterococcus faecium 1,231,408] gi|258616518|ref|ZP_05714288.1| GTP-binding protein EngA [Enterococcus faecium DO] gi|260559046|ref|ZP_05831232.1| GTP-binding protein engA [Enterococcus faecium C68] gi|261207580|ref|ZP_05922265.1| GTP-binding protein engA [Enterococcus faecium TC 6] gi|289565092|ref|ZP_06445545.1| ribosome-associated GTPase EngA [Enterococcus faecium D344SRF] gi|293556739|ref|ZP_06675302.1| ribosome-associated GTPase EngA [Enterococcus faecium E1039] gi|293563397|ref|ZP_06677846.1| GTP-binding protein EngA [Enterococcus faecium E1162] gi|294614846|ref|ZP_06694741.1| GTP-binding protein EngA [Enterococcus faecium E1636] gi|294618677|ref|ZP_06698211.1| GTP-binding protein EngA [Enterococcus faecium E1679] gi|294621937|ref|ZP_06701085.1| GTP-binding protein EngA [Enterococcus faecium U0317] gi|314938008|ref|ZP_07845318.1| ribosome-associated GTPase EngA [Enterococcus faecium TX0133a04] gi|314942006|ref|ZP_07848867.1| ribosome-associated GTPase EngA [Enterococcus faecium TX0133C] gi|314948741|ref|ZP_07852113.1| ribosome-associated GTPase EngA [Enterococcus faecium TX0082] gi|314951759|ref|ZP_07854798.1| ribosome-associated GTPase EngA [Enterococcus faecium TX0133A] gi|314991834|ref|ZP_07857292.1| ribosome-associated GTPase EngA [Enterococcus faecium TX0133B] gi|314995875|ref|ZP_07860962.1| ribosome-associated GTPase EngA [Enterococcus faecium TX0133a01] gi|257812223|gb|EEV40981.1| GTP-binding protein engA [Enterococcus faecium 1,230,933] gi|257816876|gb|EEV44204.1| GTP-binding protein engA [Enterococcus faecium 1,231,502] gi|257820720|gb|EEV47868.1| GTP-binding protein engA [Enterococcus faecium 1,231,501] gi|257826166|gb|EEV52792.1| GTP-binding protein engA [Enterococcus faecium 1,231,410] gi|257828636|gb|EEV55243.1| GTP-binding protein engA [Enterococcus faecium 1,231,408] gi|260074803|gb|EEW63119.1| GTP-binding protein engA [Enterococcus faecium C68] gi|260077963|gb|EEW65669.1| GTP-binding protein engA [Enterococcus faecium TC 6] gi|289163099|gb|EFD10946.1| ribosome-associated GTPase EngA [Enterococcus faecium D344SRF] gi|291592308|gb|EFF23922.1| GTP-binding protein EngA [Enterococcus faecium E1636] gi|291595060|gb|EFF26403.1| GTP-binding protein EngA [Enterococcus faecium E1679] gi|291598486|gb|EFF29555.1| GTP-binding protein EngA [Enterococcus faecium U0317] gi|291601071|gb|EFF31360.1| ribosome-associated GTPase EngA [Enterococcus faecium E1039] gi|291604658|gb|EFF34143.1| GTP-binding protein EngA [Enterococcus faecium E1162] gi|313589979|gb|EFR68824.1| ribosome-associated GTPase EngA [Enterococcus faecium TX0133a01] gi|313593645|gb|EFR72490.1| ribosome-associated GTPase EngA [Enterococcus faecium TX0133B] gi|313596038|gb|EFR74883.1| ribosome-associated GTPase EngA [Enterococcus faecium TX0133A] gi|313599258|gb|EFR78103.1| ribosome-associated GTPase EngA [Enterococcus faecium TX0133C] gi|313642583|gb|EFS07163.1| ribosome-associated GTPase EngA [Enterococcus faecium TX0133a04] gi|313644807|gb|EFS09387.1| ribosome-associated GTPase EngA [Enterococcus faecium TX0082] Length = 436 Score = 233 bits (593), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 133/456 (29%), Positives = 235/456 (51%), Gaps = 31/456 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAIVG PNVGKST+FNR+ +++++V + PG+TRDR+Y + G F+++DT GI D Sbjct: 5 TIAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYAKGEWLGREFSVIDTGGI-DL 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + Q+ Q E+AI EA +I+ ++ + G+T D + L + N P+I+ NK+D Sbjct: 64 GDEPFMDQIKHQAEIAIEEADVIICVVSGREGVTDADEMVAKILYRSNKPVILAVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + YE YSL + +S H LG ++ K F ++ + I Sbjct: 124 PEMRNDIYEFYSLGLGDPYPVSGSHGLGIGDILDEAVKYFSEETEEEDDDTI-------- 175 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 + +++GRPNVGKS+LIN +LG R++ G TRD++ Sbjct: 176 ---------------------KFSLIGRPNVGKSSLINAILGEERVIVSDIEGTTRDAID 214 Query: 244 ISW-NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + + + DTAGMRK ++ E+ E+ +V ++M+++ + +++L+A +Q Sbjct: 215 THFVSESGQKFLMIDTAGMRKRGKVYENTEKYSVMRAMRAIDRSDIVLMVLNAEEGIREQ 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D R+ G +++ +NKWD+V + N ++D + + I +S T + Sbjct: 275 DKRVAGYAHEAGRGIIIVVNKWDLVKKETNTMRDFEQEIRDEFRYLDYAPIVFVSAVTKQ 334 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 L+ L + +++ RI+++ LN + NP PT + ++ Y TQ+ PP+ Sbjct: 335 RLERLPEMIEQVSMNQNLRISSAVLNDIIMDAVAINPTPTDKGKRLKIFYATQVAVKPPT 394 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 F++F + SY+R+L N++R F+ G IR+ Sbjct: 395 FVVFVNEEELMHFSYERFLENQIRKAFTFEGTSIRI 430 >gi|332367384|gb|EGJ45117.1| ribosome-associated GTPase EngA [Streptococcus sanguinis SK1059] Length = 436 Score = 232 bits (592), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 142/462 (30%), Positives = 241/462 (52%), Gaps = 31/462 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAIVG PNVGKSTLFNR+ +++++V + G+TRDR+Y A F+I+DT GI D Sbjct: 5 TIAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATASWLNRKFSIIDTGGI-DD 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + +Q+ Q E+A++EA +I+F++ K GIT D + L K + PII+ NK+D Sbjct: 64 VDAPFMEQIKHQAEIAMDEADVIVFVVSGKEGITDADEYVARMLYKTHKPIILAVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + ++ Y+L + +S+ H +GT ++ L+ I N NEE Sbjct: 124 PEMRNEIFDFYALGLGDPFPVSSVHGIGTGDV----------------LDAIVENLPNEE 167 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV- 242 +E +K +++GRPNVGKS+LIN +LG R++ +G TRD++ Sbjct: 168 ------VAENPDMIK-------FSLIGRPNVGKSSLINAILGEERVIASPVAGTTRDAID 214 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 ++ + + + DTAGMRK ++ E+ E+ +V ++M+++ + +++L+A + Sbjct: 215 TVFTDSEGQEFTMIDTAGMRKSGKVYENTEKYSVMRAMRAIDRSDVVLMVLNAEEGIREY 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D RI G +V+ +NKWD + + ++D + I +S T + Sbjct: 275 DKRIAGFAHEAGKGIVIVVNKWDTLEKDNHTMKDWEEDIRDQFQYLSYAPIIFVSALTKQ 334 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 L L + +I++ TRI ++ LN + NP PT + ++ Y TQ+ + PP+ Sbjct: 335 RLHKLPDMIKQISQSQNTRIPSAVLNDVIMDAIAINPTPTDKGKRLKIFYATQVATKPPT 394 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 F+IF + SY R+L N++R F G PI + + K Sbjct: 395 FVIFVNEEELMHFSYLRFLENQIRKAFVFEGTPIHLIARKRK 436 >gi|315604206|ref|ZP_07879272.1| ribosome-associated GTPase EngA [Actinomyces sp. oral taxon 180 str. F0310] gi|315313912|gb|EFU61963.1| ribosome-associated GTPase EngA [Actinomyces sp. oral taxon 180 str. F0310] Length = 512 Score = 232 bits (592), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 140/460 (30%), Positives = 239/460 (51%), Gaps = 36/460 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI---A 61 +A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ A G F +VDT G Sbjct: 79 LAVVGRPNVGKSTLVNRILGRREAVVQDTPGVTRDRVSYPAEWAGRNFTLVDTGGWEIDV 138 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 G + S+A+Q E+A++ A ++ ++D+ G+T D I LR K+ PII+ +NK+ Sbjct: 139 KGLDRSVAEQ----AEIAVDLADAVVLVLDATVGVTASDERIVEMLRSKDKPIILAANKV 194 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D+ + + + ++SL E ISA H GT +L V+ + Sbjct: 195 DSALQEADAAYLWSLGLGEPHPISALHGRGTGDLLDVVMETLP----------------- 237 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 T +S + P R+A+VGRPNVGKS+L+N L G +R++ +G TRD Sbjct: 238 --------TESSVASALPVGGPRRVALVGRPNVGKSSLLNALAGGHRVVVNELAGTTRDP 289 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 V + DTAG+R+ T + ++ ++ E +VL+D P + Sbjct: 290 VDELVELDSRQWWFVDTAGIRRKMHRTTGADYYASIRTQAAIEKAEVALVLIDGAAPLTE 349 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTG 361 QD+R++ V + G A+V+ NKWD+V + ++++++ + L Q+ ++ +TG Sbjct: 350 QDVRVIQQVIDAGRALVVVTNKWDLVDEDRQ--KEIKSELERELVQVQWAPRINLAAKTG 407 Query: 362 EGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 + ++ ++ + W+TRI T LN++L + +P P + R+ + TQ S PP Sbjct: 408 WHTNRIVRALDTALEGWETRIPTGQLNAFLGQLVAAHPHPLRGGKQPRILFGTQASSKPP 467 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 F++F T + Y+R++ RLR F +G PI++ + Sbjct: 468 RFVLFTT--GFLDPGYRRFIERRLRETFGFAGTPIQISVR 505 >gi|260434834|ref|ZP_05788804.1| ribosome-associated GTPase EngA [Synechococcus sp. WH 8109] gi|260412708|gb|EEX06004.1| ribosome-associated GTPase EngA [Synechococcus sp. WH 8109] Length = 455 Score = 232 bits (592), Expect = 9e-59, Method: Compositional matrix adjust. Identities = 139/467 (29%), Positives = 234/467 (50%), Gaps = 38/467 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKSTL NRL + + A+V + PG+TRDR Y F +VDT G+ Sbjct: 6 VAIIGRPNVGKSTLVNRLCRSREAIVHDQPGVTRDRTYQDGYWGDREFKVVDTGGLVFDD 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 + ++ +Q LA+ EA + L ++D + G+T D +I FLR P ++ NK ++ Sbjct: 66 DSEFLPEIREQAALALEEASVALVIVDGQQGLTAADESIAEFLRSHRCPTLLAVNKCESP 125 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 E +SL E ISA H GT EL + F Sbjct: 126 EQGLAMAGEFWSLGLGEPHPISAIHGAGTGELLDQVLTFF-------------------- 165 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 SPK+ E +P+++A++GRPNVGKS+L+N + G R + G TRD++ Sbjct: 166 SPKDQEGDE--------EEPIQMAIIGRPNVGKSSLLNAICGEQRAIVSPIRGTTRDTID 217 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 S +N P + DTAG+R+ + E + +S +++ + ++++DA +QD Sbjct: 218 TSIIRENRPWRLVDTAGIRRRRSVNYGPEFFGINRSFKAIERSDVCVLVIDALDGVTEQD 277 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLL----QDLRTKAIKNLPQIGDIYINTISGR 359 R+ + G A V+ +NKWD V + + ++LR+K + L ++ + ++G+ Sbjct: 278 QRLAGRIEEDGRACVVVVNKWDAVEKDSHTMTAMEKELRSK-LYFLDWAPMLFTSALTGQ 336 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKT-QLQNPPPTIFNRYNRLKYITQIQS 418 E + L +E + + R++TS +N L++ ++PP T R +L Y TQ+ S Sbjct: 337 RVESIFALAALAVEQH---RRRVSTSVVNEVLKEALSWRSPPTTRGGRQGKLYYGTQVAS 393 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 PPSF +F P E+Y+RY+ ++R G P+R+ ++ + Sbjct: 394 RPPSFTLFVNDPKLFGETYRRYVERQIREGLGFDGSPLRLFWRGKQQ 440 >gi|332359145|gb|EGJ36966.1| ribosome-associated GTPase EngA [Streptococcus sanguinis SK49] Length = 436 Score = 232 bits (592), Expect = 9e-59, Method: Compositional matrix adjust. Identities = 141/462 (30%), Positives = 242/462 (52%), Gaps = 31/462 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAIVG PNVGKSTLFNR+ +++++V + G+TRDR+Y A F+I+DT GI D Sbjct: 5 TIAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATANWLNRKFSIIDTGGI-DD 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + +Q+ Q E+A++EA +I+F++ K GIT D + L K + PII+ NK+D Sbjct: 64 VDAPFMEQIKHQAEIAMDEADVIVFVVSGKEGITDADEYVARMLYKTHKPIILAVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + ++ Y+L + +S+ H +GT ++ L+ I N NEE Sbjct: 124 PEMRNEIFDFYALGLGDPFPVSSVHGIGTGDV----------------LDAIVENLPNEE 167 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV- 242 +E +K +++GRPNVGKS+LIN +LG +R++ +G TRD++ Sbjct: 168 ------VAENPDMIK-------FSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAID 214 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 ++ + + + DTAGMRK ++ E+ E+ +V ++M+++ + +++L+A + Sbjct: 215 TVFTDSEGQEFTMIDTAGMRKSGKVYENTEKYSVMRAMRAIDRSDVVLMVLNAEEGIREY 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D RI G +++ +NKWD + + ++D + I +S T + Sbjct: 275 DKRIAGFAHEAGKGIIIVVNKWDTLEKDNHTMKDWEEDIRDQFQYLSYAPIIFVSALTKQ 334 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 L L + +I++ TRI ++ LN + NP PT + ++ Y TQ+ + PP+ Sbjct: 335 RLHKLPDMIKQISQSQNTRIPSAVLNDVIMDAIAINPTPTDKGKRLKIFYATQVATKPPT 394 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 F+IF + SY R+L N++R F G PI + + K Sbjct: 395 FVIFVNEEELMHFSYLRFLENQIRKAFVFEGTPIHLIARKRK 436 >gi|119716729|ref|YP_923694.1| GTP-binding protein EngA [Nocardioides sp. JS614] gi|119537390|gb|ABL82007.1| small GTP-binding protein [Nocardioides sp. JS614] Length = 461 Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 137/452 (30%), Positives = 234/452 (51%), Gaps = 31/452 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ A NG F +VDT G D Sbjct: 29 LAVVGRPNVGKSTLVNRIIGRREAVVEDVPGVTRDRVSYDASWNGRAFTVVDTGGW-DPD 87 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +A+++ Q E+A++ A +LF++D+ GIT D A+ LRK P+++ +NK+D + Sbjct: 88 ARGLAERIAGQAEVAVSLADAVLFVVDATVGITDADEAVVRILRKSAKPVVLAANKVDDQ 147 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + Y +++L E +SA H G+ +L + + Sbjct: 148 RTEAEAYGLWNLGLGEPYAVSALHGRGSGDLLDAVLAALPEPP----------------- 190 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P RIA+VG+PNVGKS+L+N+L G R + + +G T D V Sbjct: 191 ---------PEREPEPGGPRRIAIVGKPNVGKSSLLNKLAGEERAVVDNVAGTTVDPVDE 241 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 DTAG+RK + E ++ ++ E ++++D +QD+ Sbjct: 242 LIELGGKTWRFIDTAGIRKRVKEASGHEYYASLRTATAIDRAEVAVLVVDGGESISEQDV 301 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 RI+ +V G A+V+A NKWD+V ++ D + ++L Q+ I+ RTG + Sbjct: 302 RIIQTVREAGRALVIAFNKWDLVDEERRYYLDREIE--RDLVQVQWAPRINITARTGWHV 359 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 D L+ ++ + + W+TR++T LN +L + ++P P + ++ + TQ ++PP+F+ Sbjct: 360 DRLVPALEKALEGWETRVSTGALNGFLGRLVAEHPHPVRSGKQPKILFGTQASTAPPTFI 419 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 +F + K+ +Y+R++ RLR F G PI Sbjct: 420 LFTS--GKLDAAYERFIERRLREEFGFVGTPI 449 >gi|295091914|emb|CBK78021.1| ribosome-associated GTPase EngA [Clostridium cf. saccharolyticum K10] Length = 444 Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 140/462 (30%), Positives = 231/462 (50%), Gaps = 29/462 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTLFN L + +++V + PG+TRDR+Y F ++DT GI Sbjct: 8 VAVVGRPNVGKSTLFNVLAGEMISIVKDTPGVTRDRIYADCTWLDKAFTLIDTGGIEPDS 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I QM +Q E+AI A +I+F++D + G+T D + LRK P+I+ NK+D+ Sbjct: 68 RDIILAQMREQAEIAIATADVIIFIVDVRQGLTDSDSKVADMLRKSRKPVILAVNKVDSF 127 Query: 125 IAQRN-FYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 N YE Y+L + + ISA LG EL + F + Sbjct: 128 AKFGNDVYEFYNLGIGDPIPISAASRLGLGELLDAVVAHFPED----------------- 170 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 ++ +P RIA+VG+PNVGKS+++N+LLG NR++ + +G TRD+V Sbjct: 171 ----------TGEEEDDDRP-RIAIVGKPNVGKSSIVNKLLGENRVIVSNIAGTTRDAVD 219 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 DTAG+R+ ++I E LE+ ++ +++ +V + +V++DAT +QD Sbjct: 220 TEIVHNGTEYVFIDTAGLRRKNKIKEELERYSIIRTVTAVERADVVLVVIDATEGVTEQD 279 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 +I + G +++ +NKWD + + + K L + +S +TG+ Sbjct: 280 AKIAGIAHDRGKGIIIVVNKWDAIEKNDKTIYEYTNKIKTILSFVPYAEYVFVSAQTGQR 339 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 L+ L + + + RI T LN + + PP+ + +L Y+TQ+ PP+F Sbjct: 340 LNKLYDLIDMVRENQTMRIQTGVLNEIMTEAVALQQPPSDKGKRLKLYYMTQVAVKPPTF 399 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 ++F + SY RYL NR+R F G ++ + K Sbjct: 400 VVFVNDKELMHFSYTRYLENRIRDAFGFRGTALKFIIRERKG 441 >gi|302527998|ref|ZP_07280340.1| ribosome-associated GTPase EngA [Streptomyces sp. AA4] gi|302436893|gb|EFL08709.1| ribosome-associated GTPase EngA [Streptomyces sp. AA4] Length = 493 Score = 232 bits (591), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 140/459 (30%), Positives = 227/459 (49%), Gaps = 41/459 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI---A 61 +A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ A G F +VDT G A Sbjct: 50 LAVVGRPNVGKSTLVNRILGRREAVVQDVPGVTRDRVAYDAFWAGRRFTLVDTGGWEPDA 109 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 G S+A+Q E+A+ A +L ++D+ G T D A+ LR+ P+++ +NK+ Sbjct: 110 TGLQASVAQQ----AEMAMQTADAVLLVVDATVGATATDEAVARVLRRSKKPVLLAANKV 165 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D + ++SL E +SA H + +L I Sbjct: 166 DDDRLLADTASLWSLGLGEPHPVSALHGRSSGDLLDSIMAALP----------------- 208 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 E+P+E T+ + P R+A+VG+PNVGKS+L+NRL G R + S +G T D Sbjct: 209 -EAPREAGTA--------TAGPRRVALVGKPNVGKSSLLNRLSGEQRSVVDSVAGTTVDP 259 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 V DTAG+RK + E ++ ++ E +VLLDA+ P + Sbjct: 260 VDSLVELDGEIWRFVDTAGLRKRVNFADGAEYYASLRTKTAIDAAEVALVLLDASEPLTE 319 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVSD--KLNLLQDLRTKAIKNLPQIGDIYINTISGR 359 QDLR++ V G A VL NKWD+V + + ++++L + + +P + ++ ++GR Sbjct: 320 QDLRVLTMVVEAGRACVLVFNKWDLVDEDRRYAMVREL-DRGLVRVPWAEKVNVSALTGR 378 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 L + + L W R++T LN WL PPP + ++ + TQ Sbjct: 379 AVRKLAPALRTALAS---WDQRVSTGQLNGWLSDLVAATPPPVRGGKQPKVLFATQAGIR 435 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 PP+ ++F T + Y+R++ + R F +G P+R+ Sbjct: 436 PPTLVLFTT--GFLEAGYRRFIERKFREQFGFAGSPVRV 472 >gi|325962917|ref|YP_004240823.1| GTP-binding protein Era [Arthrobacter phenanthrenivorans Sphe3] gi|323469004|gb|ADX72689.1| GTP-binding protein Era [Arthrobacter phenanthrenivorans Sphe3] Length = 516 Score = 232 bits (591), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 141/457 (30%), Positives = 228/457 (49%), Gaps = 30/457 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKSTL NR++ ++ AVV + PG+TRDR+ A NG F +VDT G + Sbjct: 81 LAIIGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVMYSANWNGRNFTLVDTGGW-EHD 139 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I ++ +Q E+A+ A +LF++DS G T D + LR+ P+I+V+NK+D Sbjct: 140 ARGIHARVAEQAEMAVELADAVLFVVDSAVGATATDEGVMKMLRRSKKPVIMVANKVDDF 199 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + ++ L F E +SA H G ++L + + + IE R+ Sbjct: 200 AQEADSATLWGLGFGEPYPVSALHGRGVADLLDHVMDVLPE------FSTIEGTDRS--- 250 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P RIA++GRPNVGKS+L+N+L G R++ + +G TRD V Sbjct: 251 ----------------GGPRRIALIGRPNVGKSSLLNKLAGTERVVVDNTAGTTRDPVDE 294 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 DTAG+R+ + + + ++ ++ E +VLL +QD+ Sbjct: 295 FIELGGRTWRFVDTAGIRRRQHMAQGADFYASLRTQAALEKAEVAVVLLAVDEVLSEQDV 354 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 RI+ +G A+VLA NKWD++ D+ L + ++L + IS +TG Sbjct: 355 RILQLAIESGRALVLAFNKWDLLDDERRRY--LEREIEQDLAHVNWAPRVNISAKTGWHK 412 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 D L+ ++ + W RI T LN++L + +P P + R+ + TQ S PP F+ Sbjct: 413 DRLVPALDLALENWDKRIATGRLNAFLGELVAAHPHPVRGGKQPRILFGTQASSRPPKFV 472 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 +F T + Y+R++ RLR F G PI + + Sbjct: 473 LFTT--GFLDPGYRRFITRRLRETFGFEGTPIEVSMR 507 >gi|283458421|ref|YP_003363045.1| putative GTPase [Rothia mucilaginosa DY-18] gi|283134460|dbj|BAI65225.1| predicted GTPase [Rothia mucilaginosa DY-18] Length = 528 Score = 232 bits (591), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 141/457 (30%), Positives = 239/457 (52%), Gaps = 30/457 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST+ NR++ ++ AVV + PG+TRDR+ +A G F +VDT G + Sbjct: 79 VAIVGRPNVGKSTIINRILGRREAVVEDKPGVTRDRVSYKAEWLGKSFTLVDTGGW-ESD 137 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I Q+ +Q E+A+ +A +++ ++D++ G+T D I LR+ PII+++NK+D Sbjct: 138 ARGIDAQVAEQAEIAVEQADVVVLVVDARVGVTASDEQIVRMLRRVKKPIILIANKIDDA 197 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + Y ++SL + +S H G ++ I ++ P H Sbjct: 198 HLEPEIYNLWSLGMGQPFPVSGLHGRGLADALDEILEVM----PEHSQ------------ 241 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 + + + P R+A+VGRPNVGKS+L+N+L G R + +G TRD + Sbjct: 242 ---------FAQPEALGGPRRVALVGRPNVGKSSLLNKLAGSERAVVNDLAGTTRDPIDE 292 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 +P DTAG+R+ + + E + ++ ++ E +VLLD + P +QD+ Sbjct: 293 IIELGGYPWRFVDTAGIRRRQHMAKGAEFYSSLRTQTALERSEVAVVLLDVSEPISEQDV 352 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 RIV +V ++G A+VLA NKWD + + + L + ++L + IS +TG Sbjct: 353 RIVQTVIDSGRAMVLAFNKWDTLDEDRRYM--LEREIERDLAHVQWAPRVNISAKTGWHK 410 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 D L+ ++ + W +RI T LN++L + +P P + R+ + TQ+ S PP F+ Sbjct: 411 DKLVPALERSLESWDSRIPTGRLNAFLGEIVAAHPHPLRGGKQPRILFGTQVSSRPPKFV 470 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 +F T + Y+R++ RLR F +G PI + + Sbjct: 471 LFTT--GFLDPGYRRFITRRLRETFDFTGTPIEISMR 505 >gi|193215037|ref|YP_001996236.1| GTP-binding protein EngA [Chloroherpeton thalassium ATCC 35110] gi|238692727|sp|B3QZ96|DER_CHLT3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|193088514|gb|ACF13789.1| small GTP-binding protein [Chloroherpeton thalassium ATCC 35110] Length = 435 Score = 232 bits (591), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 142/466 (30%), Positives = 250/466 (53%), Gaps = 44/466 (9%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AIVG PNVGKSTLFNR++ K++A+V + PG+TRDR + +A G F+++DT G + Sbjct: 4 TVAIVGRPNVGKSTLFNRILNKRVAIVDDVPGVTRDRNFSEAEWCGKQFSLIDTGGYSRT 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKK--NIPIIIVSNKM 121 + A + +Q+ +A+ EA++I+ ++D + GIT D IT LRK+ + + NK+ Sbjct: 64 GDTFSAAVL-EQSLIALQEANIIILVVDLRTGITDIDLEITELLRKQASEKTVFLAVNKV 122 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D + + + L E +SA G +EL + H E Sbjct: 123 DNNLMESDAQLFRKLGLSEPYFVSALDGRGVAELLDAVIA--------HIPE-------- 166 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 +++P+ + T +++ V+GRPNVGKS+ +N +LG NR + G TRD+ Sbjct: 167 DDAPESDDT-------------VKLTVIGRPNVGKSSFVNAILGQNRQIVTDIPGTTRDA 213 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 V + + DTAG+R+ +++ +++E + ++ +++ C+ I+LLDAT E Sbjct: 214 VDSRFKRNGQDFLLIDTAGLRRKAKVDDNIELFSALRTEKAIERCDVAIILLDATQGLEN 273 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVS--DKLNLLQDLRTK-AIKNLPQIGDIYINTISG 358 QDL+++++ +V+A+NKWD++ DK + + R + ++NL + ++I+ ++ Sbjct: 274 QDLKVINAAAQKKRGMVIAVNKWDLIEKDDKTAIAYEKRLREELRNLSYVPLLFISALTK 333 Query: 359 RTGEGLDDLMVSVLEINKLWKTR---ITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQ 415 + D+ V W+ R I TS LN+ + + PP + + ++KY+TQ Sbjct: 334 QRIYKAIDIAYQV------WQNRRMKIDTSRLNNLMLNDIKRTPPSSKSGKEIKIKYLTQ 387 Query: 416 IQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 + + PP F +F P I E YKR+L +LR +F G PI + F+ Sbjct: 388 LATEPPLFGLFAGNPQLIEEHYKRFLERKLREHFGFEGTPIELKFR 433 >gi|54020024|ref|YP_115589.1| GTP-binding protein EngA [Mycoplasma hyopneumoniae 232] gi|53987197|gb|AAV27398.1| putative GTP-binding protein [Mycoplasma hyopneumoniae 232] Length = 433 Score = 232 bits (591), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 140/459 (30%), Positives = 236/459 (51%), Gaps = 35/459 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG NVGKSTLFNR+ KK+++ PG+TRDR+Y N F ++DT GI + Sbjct: 5 VALVGKSNVGKSTLFNRIAGKKISITDPLPGVTRDRIYQNVTWNQHSFLLIDTGGIQI-E 63 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N + + Q ++A+ EA ++++++D I DH + S LRK II+ +NK++ Sbjct: 64 NENFQDLIRIQVQIALEEADILVWVLDGTKEIDSEDHFVLSLLRKSKKKIILAANKLEN- 122 Query: 125 IAQRNF-YEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 ++F ++ L F+++ ISA H G + + F +K N +NE Sbjct: 123 --NKSFDISLFELGFEKVFPISALHGHGVGDFLDELVGNFNKK-----------NFKNEI 169 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 ++ ++GRPN GKS+L+N LLG NR + G TRDS+S Sbjct: 170 F-------------------FKLTLIGRPNAGKSSLLNWLLGENRSIISEIPGTTRDSIS 210 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 W +EI DTAG+RK S++ ES++ ++ +S+ + T++LLDA F D Sbjct: 211 GFWKINGQTLEIIDTAGIRKKSKLAESVDFYAFLRAFRSLDQADLTLILLDACQDFHHFD 270 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 LRI F ++L +NKWD++ Q+ K + + IS +TGE Sbjct: 271 LRIAGYAFERNKPIILVINKWDLIQKDTRTQQEYLRKIKGKFKFLDWAPVVFISAKTGEK 330 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 + L+ + ++ + +I+T+ LN +L + Q+ P P + + ++ QI P+F Sbjct: 331 IHKLIDVIFQVKNNLEKKISTNLLNQFLMEIQMIQPHPNVNGKKVYFNFLEQIYGKIPTF 390 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 + F T N + SY+RY+ N++R F G PI++ +++ Sbjct: 391 IFFVTDKNLVHFSYQRYIENQMRKYFDFFGCPIKIIYKN 429 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 56/175 (32%), Positives = 91/175 (52%), Gaps = 15/175 (8%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 + + + ++G PN GKS+L N L+ + +++ PG TRD + G ING I+DTAGI Sbjct: 169 IFFKLTLIGRPNAGKSSLLNWLLGENRSIISEIPGTTRDSISGFWKINGQTLEIIDTAGI 228 Query: 61 ADGKNCSIAKQMNDQTEL----AINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIII 116 K +A+ ++ L ++++A L L L+D+ +D I + ++N PII+ Sbjct: 229 R--KKSKLAESVDFYAFLRAFRSLDQADLTLILLDACQDFHHFDLRIAGYAFERNKPIIL 286 Query: 117 VSNKM-----DTRIAQRNFYEIYS----LDFKEIVEISAEHDLGTSELHSVIFKI 162 V NK DTR Q +I LD+ +V ISA+ +L VIF++ Sbjct: 287 VINKWDLIQKDTRTQQEYLRKIKGKFKFLDWAPVVFISAKTGEKIHKLIDVIFQV 341 >gi|15617192|ref|NP_240405.1| GTP-binding protein EngA [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219681942|ref|YP_002468328.1| 50S ribosomal subunit stability factor (YfgK) [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|257471654|ref|ZP_05635653.1| GTP-binding protein EngA [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|11132317|sp|P57662|DER_BUCAI RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|254783141|sp|B8D8G4|DER_BUCA5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|25328230|pir||C85000 hypothetical GTP-binding protein [imported] - Buchnera sp. (strain APS) gi|10039257|dbj|BAB13291.1| hypothetical GTP-binding protein [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219624785|gb|ACL30940.1| 50S ribosomal subunit stability factor (YfgK) [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] Length = 453 Score = 232 bits (591), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 164/479 (34%), Positives = 261/479 (54%), Gaps = 39/479 (8%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAII--NGVIFNIVDTA 58 MI I ++G NVGKSTLFN L K + A+V N+PGITRDR YG + N I ++DTA Sbjct: 1 MIPIIVLIGRTNVGKSTLFNVLTKTRDALVANYPGITRDRQYGYCKLQSNKKII-LIDTA 59 Query: 59 GIADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVS 118 G+ D K I KQ QT +AI EAHLILFL++++ G+ P ++ I+ +RK I+V Sbjct: 60 GL-DIKLNEIEKQAQAQTLIAIKEAHLILFLVNARDGLMPQEYEISKNIRKYQKKTILVI 118 Query: 119 NKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL-HSVIFKIFKQKYPNHPLEMIEN 177 NK+D E YSL F++I +ISA H+ G + L + + +K+ ++ EN Sbjct: 119 NKIDGINEASKINEFYSLGFEKIQKISASHNQGINTLINRYLIPWISEKFKK---KITEN 175 Query: 178 NKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGI 237 ++ E +K I+ +++A +GRPNVGKSTLIN +L R++T + G Sbjct: 176 LYKDTE-------------LKKIA--IKVAFIGRPNVGKSTLINGILKEERMITSNTPGT 220 Query: 238 TRDSVS--ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDA 295 T DS+S I +N++N+ + DTAG K + ++ ++ K++Q++ ++++DA Sbjct: 221 TLDSISTPIKYNYENYT--LIDTAGASKKKKKINDFQRFSIIKTLQTIEKSNVILLIIDA 278 Query: 296 TIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNL--PQIGDIY- 352 ++ QDL + D + ++G +V+ +NK D L + K IK L ++ +Y Sbjct: 279 SLQTCHQDLSLADFIIHSGKGIVVVVNKCD-------LFNSVELKKIKELIKSKLKFLYF 331 Query: 353 --INTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRL 410 I+ IS +G+ L S+ E + K +I+TS L + ++ PP I R +L Sbjct: 332 SKIHFISALYKKGIFQLFKSIKESYEDSKRKISTSTLIKTMHIAIKKHQPPIIKGRRIKL 391 Query: 411 KYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIK 469 KY S+PP +I + YKRYLIN + G PI++ F+ ++NPY+K Sbjct: 392 KYAHLGSSNPPKIIIHGNQVKYLSLPYKRYLINFFYKTLKIKGTPIQIQFKDNENPYVK 450 >gi|291546330|emb|CBL19438.1| ribosome-associated GTPase EngA [Ruminococcus sp. SR1/5] Length = 441 Score = 232 bits (591), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 149/465 (32%), Positives = 247/465 (53%), Gaps = 41/465 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFN L +++V + PG+TRDR+Y F ++DT GI Sbjct: 6 VAIVGRPNVGKSTLFNALAGDNISIVKDTPGVTRDRIYADVTWLDRTFTLIDTGGIEPDS 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 + I +M +Q ++AI+ A +I+F+ D + G+ D + LR+ P+ +V NK+D+ Sbjct: 66 SDIILSRMREQAQIAIDTADVIIFITDVRQGLVDSDAKVADMLRRSGKPVRLVVNKVDSH 125 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + YE Y+L E + ISA + G ++ + K F K +EE Sbjct: 126 QKYMMDVYEFYNLGIGEPIPISAANRQGLGDMLDEVIKEFPDK--------------SEE 171 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 +++I +IA+VG+PNVGKS+LIN+LLG R++ + +G TRD++ Sbjct: 172 EDQDDIP--------------KIAIVGKPNVGKSSLINKLLGEERVIVSNIAGTTRDAID 217 Query: 244 --ISWNWKNHPIEIF-DTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 ++WN K++ IF DTAG+R+ ++ E +E+ +V +++ +V + +V++DA+ Sbjct: 218 TKVTWNKKDY---IFIDTAGLRRKGKVKEEIERYSVIRTVTAVERADVVVVVIDASEGVT 274 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 +QD +I + G +++A+NKWD + + K + L + I IS +T Sbjct: 275 EQDAKIAGIAHDRGKGIIVAVNKWDAIEKNDKTIYKHTEKIRQILSFMPYAQIIFISAKT 334 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWL-QKTQLQNPPPTIFNRYNRLK--YITQIQ 417 G+ L L ++ + + RI T LN L + LQ PP +R RLK Y+TQ+ Sbjct: 335 GQRLPKLFENIDTVIENQTLRIQTGVLNEILSEAVALQQPPS---DRGRRLKIFYMTQVA 391 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 PP+F+IF + SY RYL N++R F SG ++ + Sbjct: 392 VKPPTFVIFVNDKELMHFSYVRYLENKIRDAFGFSGTSLKFIIRE 436 >gi|324991285|gb|EGC23218.1| ribosome-associated GTPase EngA [Streptococcus sanguinis SK353] Length = 436 Score = 232 bits (591), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 139/462 (30%), Positives = 241/462 (52%), Gaps = 31/462 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAIVG PNVGKSTLFNR+ +++++V + G+TRDR+Y A F+I+DT GI D Sbjct: 5 TIAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATANWLNRKFSIIDTGGI-DD 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + +Q+ Q E+A++EA +I+F++ K GIT D + L K + PII+ NK+D Sbjct: 64 VDAPFMEQIKHQAEIAMDEADVIVFVVSGKEGITDADEYVARMLYKTHKPIILAVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + ++ Y+L + +S+ H +GT ++ I + PN E++EN Sbjct: 124 PEMRNEIFDFYALGLGDPFPVSSVHGIGTGDVLDAIV----ENLPNE--EVVEN------ 171 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV- 242 ++ +++GRPNVGKS+LIN +LG R++ +G TRD++ Sbjct: 172 -----------------PDMIKFSLIGRPNVGKSSLINAILGEERVIASPVAGTTRDAID 214 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 ++ + + + DTAGMRK ++ E+ E+ +V ++M+++ + +++L+A + Sbjct: 215 TVFTDSEGQEFTMIDTAGMRKSGKVYENTEKYSVMRAMRAIDRSDVVLMVLNAEEGIREY 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D RI G +++ +NKWD + + ++D + I +S T + Sbjct: 275 DKRIAGFAHEAGKGMIIVVNKWDTLEKDNHTMKDWEADIRDQFQYLSYAPIIFVSALTKQ 334 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 L L + +I++ TRI ++ LN + NP PT + ++ Y TQ+ + PP+ Sbjct: 335 RLHKLPDMIKQISQSQNTRIPSAVLNDVIMDAVAINPTPTDKGKRLKIFYATQVATKPPT 394 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 F+IF + SY R+L N++R F G PI + + K Sbjct: 395 FVIFVNEEELMHFSYLRFLENQIRKAFVFEGTPIHLIARKRK 436 >gi|213966005|ref|ZP_03394195.1| bifunctional cytidylate kinase/GTP-binding protein [Corynebacterium amycolatum SK46] gi|213951419|gb|EEB62811.1| bifunctional cytidylate kinase/GTP-binding protein [Corynebacterium amycolatum SK46] Length = 773 Score = 232 bits (591), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 145/462 (31%), Positives = 235/462 (50%), Gaps = 40/462 (8%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI--- 60 T+AIVG PNVGKST+ NR + ++ AVV + PG+TRDR+ G F + DT G Sbjct: 340 TVAIVGRPNVGKSTMVNRFIGRREAVVEDFPGVTRDRISYLGEWGGRRFWVQDTGGWDPD 399 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 A G + +IA+Q E A+ A +I+ ++D+ GIT + + L++ P+I+ +NK Sbjct: 400 AKGMHAAIARQ----AETAMETADVIVMVVDTTVGITATEEVMARRLQRAEQPVILAANK 455 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 ++ + E ++L E SA H G +++ + F P P R Sbjct: 456 FESDSQLGDVAEFWALGLGEPHPTSALHGRGNADVMDEVVASF----PEVP--------R 503 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 + P + P R+A+VG+PNVGKS+L+N+L G NR + + +G T D Sbjct: 504 AKSLP---------------TGPRRVALVGKPNVGKSSLLNKLSGENRAVVSNVAGTTVD 548 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 V DTAG+RK ++ + E ++ ++ E I L+DA+ Sbjct: 549 PVDSLVQMDETLWRFVDTAGIRKKTKTAKGHEFYASLRTRSTIDNAEVVIFLVDASEQIT 608 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWD-MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGR 359 +QD R++ + ++G A+V+A NKWD M D+ +LL+ + + ++P + IS + Sbjct: 609 EQDQRVLRMILDSGRALVVAYNKWDLMDEDRRDLLEREIEEQLAHVPWARRV---NISAK 665 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 TG + L ++LE + W RI+T LN+WL+ QNPPP R R+ + TQ S Sbjct: 666 TGRAVQKLEPAMLEAVESWDKRISTGRLNTWLRAIMQQNPPPLRGGRQPRVLFATQASSR 725 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 PP ++F T + Y+R+L +LR F G P+R+ + Sbjct: 726 PPVIVLFTT--GFLEHGYRRFLERKLREEFGFEGSPVRIAVR 765 >gi|325695118|gb|EGD37020.1| ribosome-associated GTPase EngA [Streptococcus sanguinis SK150] Length = 436 Score = 232 bits (591), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 142/462 (30%), Positives = 241/462 (52%), Gaps = 31/462 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAIVG PNVGKSTLFNR+ +++++V + G+TRDR+Y A F+I+DT GI D Sbjct: 5 TIAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATANWLNRKFSIIDTGGI-DD 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + +Q+ Q E+A++EA +I+F++ K GIT D + L K + PII+ NK+D Sbjct: 64 VDAPFMEQIKHQAEIAMDEADVIVFVVSGKEGITDADEYVARMLYKTHKPIILAVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + ++ Y+L + +S+ H +GT ++ L+ I N NEE Sbjct: 124 PEMRNEIFDFYALGLGDPFPVSSVHGIGTGDV----------------LDAIVENLPNEE 167 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV- 242 +E +K +++GRPNVGKS+LIN +LG R++ +G TRD++ Sbjct: 168 ------VAENPDMIK-------FSLIGRPNVGKSSLINAILGEERVIASPVAGTTRDAID 214 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 ++ + + + DTAGMRK ++ E+ E+ +V ++M+++ + +++L+A + Sbjct: 215 TVFTDSEGQEFTMIDTAGMRKSGKVYENTEKYSVMRAMRAIDRSDVVLMVLNAEEGIREY 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D RI G +V+ +NKWD + + ++D + I +S T + Sbjct: 275 DKRIAGFAHEAGKGIVIVVNKWDTLEKDNHTMKDWEEDIRDQFQYLSYAPIIFVSALTKQ 334 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 L L + +I++ TRI ++ LN + NP PT + ++ Y TQ+ + PP+ Sbjct: 335 RLHKLPDMIKQISQSQNTRIPSAVLNDVIMDAIAINPTPTDKGKRLKIFYATQVATKPPT 394 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 F+IF + SY R+L N++R F G PI + + K Sbjct: 395 FVIFVNEEELMHFSYLRFLENQIRKAFIFEGTPIHLIARKRK 436 >gi|327490071|gb|EGF21859.1| ribosome-associated GTPase EngA [Streptococcus sanguinis SK1058] Length = 436 Score = 232 bits (591), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 140/462 (30%), Positives = 241/462 (52%), Gaps = 31/462 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAIVG PNVGKSTLFNR+ +++++V + G+TRDR+Y A F+I+DT GI D Sbjct: 5 TIAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATASWLNRKFSIIDTGGI-DD 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + +Q+ Q E+A++EA +I+F++ K GIT D + L K + PII+ NK+D Sbjct: 64 VDAPFMEQIKHQAEIAMDEADVIVFVVSGKEGITDADEYVARMLYKTHKPIILAVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + ++ Y+L + +S+ H +GT ++ I + PN E++EN Sbjct: 124 PEMRNEIFDFYALGLGDPFPVSSVHGIGTGDVLDAIV----ENLPNE--EVVEN------ 171 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV- 242 ++ +++GRPNVGKS+LIN +LG R++ +G TRD++ Sbjct: 172 -----------------PDMIKFSLIGRPNVGKSSLINAILGEERVIASPVAGTTRDAID 214 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 ++ + + + DTAGMRK ++ E+ E+ +V ++M+++ + +++L+A + Sbjct: 215 TVFTDSEGQEFTMIDTAGMRKSGKVYENTEKYSVMRAMRAIDRSDVVLMVLNAEEGIREY 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D RI G +V+ +NKWD + + ++D + I +S T + Sbjct: 275 DKRIAGFAHEAGKGIVIVVNKWDTLEKDNHTMKDWEEDIRDQFQYLSYAPIIFVSALTKQ 334 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 L L + +I++ TRI ++ LN + NP PT + ++ Y TQ+ + PP+ Sbjct: 335 RLHMLPDMIKQISQSQNTRIPSAVLNDVIMDAIAINPTPTDKGKRLKIFYATQVATKPPT 394 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 F+IF + SY R+L N++R F G PI + + K Sbjct: 395 FVIFVNEEELMHFSYLRFLENQIRKAFVFEGTPIHLIARKRK 436 >gi|324993642|gb|EGC25561.1| ribosome-associated GTPase EngA [Streptococcus sanguinis SK405] gi|324995046|gb|EGC26959.1| ribosome-associated GTPase EngA [Streptococcus sanguinis SK678] gi|327462911|gb|EGF09232.1| ribosome-associated GTPase EngA [Streptococcus sanguinis SK1] Length = 436 Score = 231 bits (590), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 141/462 (30%), Positives = 241/462 (52%), Gaps = 31/462 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAIVG PNVGKSTLFNR+ +++++V + G+TRDR+Y A F+I+DT GI D Sbjct: 5 TIAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATASWLNRKFSIIDTGGI-DD 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + +Q+ Q E+A++EA +I+F++ K GIT D + L K + PII+ NK+D Sbjct: 64 VDAPFMEQIKHQAEIAMDEADVIVFVVSGKEGITDADEYVARMLYKTHKPIILAVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + ++ Y+L + +S+ H +GT ++ L+ I N NEE Sbjct: 124 PEMRNEIFDFYALGLGDPFPVSSVHGIGTGDV----------------LDAIVENLPNEE 167 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV- 242 +E +K +++GRPNVGKS+LIN +LG R++ +G TRD++ Sbjct: 168 ------VAENPDMIK-------FSLIGRPNVGKSSLINAILGEERVIASPVAGTTRDAID 214 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 ++ + + + DTAGMRK ++ E+ E+ +V ++M+++ + +++L+A + Sbjct: 215 TVFTDSEGQEFTMIDTAGMRKSGKVYENTEKYSVMRAMRAIDRSDVVLMVLNAEEGIREY 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D RI G +V+ +NKWD + + ++D + I +S T + Sbjct: 275 DKRIAGFAHEAGKGIVIVVNKWDTLEKDNHTMKDWEEDIRDQFQYLSYAPIIFVSALTKQ 334 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 L L + +I++ TRI ++ LN + NP PT + ++ Y TQ+ + PP+ Sbjct: 335 RLHKLPDMIKQISQSQNTRIPSAVLNDVIMDAIAINPTPTDKGKRLKIFYATQVATKPPT 394 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 F+IF + SY R+L N++R F G P+ + + K Sbjct: 395 FVIFVNEEELMHFSYLRFLENQIRKAFVFEGTPLHLIARKRK 436 >gi|327462002|gb|EGF08331.1| ribosome-associated GTPase EngA [Streptococcus sanguinis SK1057] Length = 436 Score = 231 bits (590), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 141/462 (30%), Positives = 242/462 (52%), Gaps = 31/462 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAIVG PNVGKSTLFNR+ +++++V + G+TRDR+Y A F+I+DT GI D Sbjct: 5 TIAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATASWLNRKFSIIDTGGI-DD 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + +Q+ Q E+A++EA +I+F++ K GIT D + L K + PII+ NK+D Sbjct: 64 VDAPFMEQIKHQAEIAMDEADVIVFVVSGKEGITDADEYVARMLYKTHKPIILAVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + ++ Y+L + +S+ H +GT ++ L+ I N NEE Sbjct: 124 PEMRNEIFDFYALGLGDPFPVSSVHGIGTGDV----------------LDAIVENLPNEE 167 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV- 242 +E +K +++GRPNVGKS+LIN +LG +R++ +G TRD++ Sbjct: 168 ------VAENPDMIK-------FSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAID 214 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 ++ + + + DTAGMRK ++ E+ E+ +V ++M+++ + +++L+A + Sbjct: 215 TVFTDSEGQEFTMIDTAGMRKSGKVYENTEKYSVMRAMRAIDRSDVVLMVLNAEEGIREY 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D RI G +++ +NKWD + + ++D + I +S T + Sbjct: 275 DKRIAGFAHEAGKGMIIVVNKWDTLEKDNHTMKDWEEDIRDQFQYLSYAPIIFVSALTKQ 334 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 L L + +I++ TRI ++ LN + NP PT + ++ Y TQ+ + PP+ Sbjct: 335 RLHKLPDMIKQISQSQNTRIPSAVLNDVIMDAIAINPTPTDKGKRLKIFYATQVATKPPT 394 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 F+IF + SY R+L N++R F G PI + + K Sbjct: 395 FVIFVNEEELMHFSYLRFLENQIRKAFIFEGTPIHLIARKRK 436 >gi|170781664|ref|YP_001709996.1| GTP-binding protein EngA [Clavibacter michiganensis subsp. sepedonicus] gi|169156232|emb|CAQ01374.1| putative GTP binding protein [Clavibacter michiganensis subsp. sepedonicus] Length = 502 Score = 231 bits (590), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 142/457 (31%), Positives = 234/457 (51%), Gaps = 41/457 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI---A 61 +A+VG PNVGKS L NR++ ++ AVV + PG+TRDR+ +A G F +VDT G A Sbjct: 70 LAVVGRPNVGKSALINRILGRREAVVEDTPGVTRDRVSYKAEYAGRWFTLVDTGGWEPDA 129 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 G N S+A Q E+A++ A +LF++D+ G T D + LRK +I+ +NK+ Sbjct: 130 KGINASVAM----QAEIAMDLADAVLFVVDANVGATSTDEHVVRLLRKTKKTVILAANKV 185 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D + N ++SL E +SA H G ++L ++ K PL Sbjct: 186 DDARQEPNAASLWSLGLGEPHPVSALHGRGVADLLDLVLKTL-------PL--------- 229 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 K + + + P R+A++GRPNVGKS+L+N+ G R++ +G TRD Sbjct: 230 ----------VSKVAKEEVGGPRRVAILGRPNVGKSSLLNKAAGEERVVVNELAGTTRDP 279 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 V + DTAG+R+ + + + ++ ++ E +V++D + + Sbjct: 280 VDEQVEIADKVWRFVDTAGIRRRMHLAQGADFYASLRTSAALEKAEVAVVMIDVSEVISE 339 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVSDKLN--LLQDLRTKAIKNLPQIGDIYINTISGR 359 QD+RI++ V +G A+VLA NKWD++ D+ L +++ T +L + IS R Sbjct: 340 QDIRIIELVLESGRALVLAFNKWDLLDDERRRYLEREIET----DLAHVSWAPRVNISAR 395 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 TG ++ L+ ++ + W TRI T N++L + +P P + R+ + TQ S Sbjct: 396 TGRHMEKLVPALETALESWDTRIATGKFNAFLAELTAAHPHPVRGGKQPRILFGTQASSR 455 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 PP+F++F T + Y+RY+ RLR + G PI Sbjct: 456 PPTFVLFTT--GYLDPQYRRYIQRRLREIYGFEGSPI 490 >gi|332523593|ref|ZP_08399845.1| ribosome biogenesis GTPase Der [Streptococcus porcinus str. Jelinkova 176] gi|332314857|gb|EGJ27842.1| ribosome biogenesis GTPase Der [Streptococcus porcinus str. Jelinkova 176] Length = 436 Score = 231 bits (590), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 138/462 (29%), Positives = 242/462 (52%), Gaps = 31/462 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AIVG PNVGKSTLFNR+ +++++V + G+TRDR+Y F+++DT GI D Sbjct: 5 TVAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTTGEWLNRKFSLIDTGGI-DD 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 N +Q+ Q ++A++EA +I+F++ K G+T D + L + + P+I+ NK+D Sbjct: 64 VNAPFMEQIKHQAQIAMDEADVIVFVVSGKEGVTDADEYVAKMLYRTHKPVILAINKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + Y+ YSL + +S+ H +GT ++ I + N P+E +E+N Sbjct: 124 PEMRNDIYDFYSLGLGDPYPLSSVHGIGTGDVLDAIVE-------NLPVEEVEDN----- 171 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 ENI +R +++GRPNVGKS+LIN +LG +R++ +G TRD++ Sbjct: 172 ---ENI--------------IRFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAID 214 Query: 244 ISW-NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 S+ + + DTAGMRK +I E+ E+ +V ++M+++ + +++++A + Sbjct: 215 TSFTDSDGQEFTMIDTAGMRKSGKIYENTEKYSVMRAMRAIDRSDVVLMVINAEEGIREY 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D RI G +++ +NKWD ++ + + + I +S T + Sbjct: 275 DKRIAGFAHEAGKGMIIVVNKWDTIAKDNHTVSKWEEDIRDQFQFLSYAPIIFVSALTKQ 334 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 L+ L + I+ RI ++ LN + NP PT + ++ Y TQ+ PP+ Sbjct: 335 RLNKLPELIKRISDSQSRRIPSAVLNDVIMDAIAINPTPTDKGKRLKIFYATQVSVKPPT 394 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 F+IF + SY R+L N++R F+ G PI + + K Sbjct: 395 FVIFVNEEELMHFSYLRFLENQIRAAFTFEGTPIHLIARKRK 436 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/136 (30%), Positives = 70/136 (51%), Gaps = 14/136 (10%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAI-INGVIFNIVDTAGI 60 I +++G PNVGKS+L N ++ + + G TRD + +G F ++DTAG+ Sbjct: 174 IIRFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTSFTDSDGQEFTMIDTAGM 233 Query: 61 -------ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIP 113 + + S+ + M AI+ + ++L +I+++ GI YD I F + Sbjct: 234 RKSGKIYENTEKYSVMRAMR-----AIDRSDVVLMVINAEEGIREYDKRIAGFAHEAGKG 288 Query: 114 IIIVSNKMDTRIAQRN 129 +IIV NK DT IA+ N Sbjct: 289 MIIVVNKWDT-IAKDN 303 >gi|225848630|ref|YP_002728793.1| GTP-binding protein EngA [Sulfurihydrogenibium azorense Az-Fu1] gi|225644538|gb|ACN99588.1| ribosome-associated GTPase EngA [Sulfurihydrogenibium azorense Az-Fu1] Length = 443 Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 137/465 (29%), Positives = 240/465 (51%), Gaps = 26/465 (5%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 ++ +AIVG PNVGKS+LFNRL+ K+ A+V + PG+TRDR+ Q GV F +VDT G Sbjct: 1 MFRVAIVGRPNVGKSSLFNRLIGKRKAIVEDIPGVTRDRIISQTEWRGVKFEVVDTGGYI 60 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 A + Q E + EA L++F++D K G+TP D I + L + P+I+ NK+ Sbjct: 61 TSDEDKFAPYIRKQVEKELQEADLLVFVVDGKQGLTPLDKEIATLLHRTEKPVIVAVNKI 120 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D ++ YE Y L F++++ IS LG ++L I+ Sbjct: 121 DDPEKEKLAYEFYELGFQDVIPISTIQKLGIADLLDKIY--------------------- 159 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 E + + +++A+VG+PN GKS+L+N +L R+L G TRD+ Sbjct: 160 -EYIPDYEKEVEYEEEEEEKDYIKVAIVGKPNAGKSSLLNAILNEERVLVSDIPGTTRDT 218 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 V + + DTAG+RK S++ +E +V +S++++ + ++++DA I + Sbjct: 219 VDTLFEKDSQRFLFLDTAGIRKRSKVEYGVEFFSVGRSIEAIEKADVVVLVIDAIIGATE 278 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTG 361 QD +I + V+ +NK DM+ +K ++ + + + L + I S Sbjct: 279 QDQKIAGLIQRRYKPAVIVINKIDMLKEK--DIEKVIRQVKEKLYFLDYAPIVLTSAYKK 336 Query: 362 EGLDDLMVSVLEI-NKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G+++L+ ++++ N++WK R++T LN L++ PP+ + ++ Y TQ++ P Sbjct: 337 IGIEELLNQIVKVYNQVWK-RVSTGQLNRALKQITSLRQPPSYQGKPLKIYYATQLEGKP 395 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 P+FL+F E+Y ++L N LR L PI++ F+ + Sbjct: 396 PAFLLFVNKAEGFKENYVKFLENNLRKLLGLENSPIKLIFRGKEE 440 >gi|319637814|ref|ZP_07992580.1| GTP-binding protein engA [Neisseria mucosa C102] gi|317400969|gb|EFV81624.1| GTP-binding protein engA [Neisseria mucosa C102] Length = 485 Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 146/472 (30%), Positives = 224/472 (47%), Gaps = 40/472 (8%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M TIA+VG PNVGKSTLFNRL + K A+V + PG+TRDR YG + + ++DT G Sbjct: 1 MKPTIALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVIDTGGF 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + I +M QT A++EA ++FL+D + G+TP D I LR+ P+ + NK Sbjct: 61 EPVVDSGILHEMAKQTLQAVDEADAVVFLVDGRTGLTPQDKIIADRLRQSPRPVYLAVNK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKY-----PNHPLEMI 175 + E Y L + IS H G L I + F + HP+ Sbjct: 121 GEGGNRAVLAAEFYELALGDPYVISGAHGDGVYYLIEDILETFPEPEKEEEEAKHPV--- 177 Query: 176 ENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQS 235 AV+GRPNVGKSTL+N +LG R++ + Sbjct: 178 ------------------------------FAVIGRPNVGKSTLVNAILGEERVIAFDMA 207 Query: 236 GITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDA 295 G TRDS+ I + P I DTAG+R+ ++ + +E+ +V K+MQ+V +++LDA Sbjct: 208 GTTRDSIHIDFERDGKPFTIIDTAGVRRRGKVDKVVEKFSVIKAMQAVEAANVAVLVLDA 267 Query: 296 TIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINT 355 QD I G A+V+A+NKWD +S++ + ++ + L + + Sbjct: 268 QQDIADQDATIAGFALEAGRALVVAVNKWDGISEERR--EQVKRDINRKLYFLDFAKFHF 325 Query: 356 ISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQ 415 IS G+D L S+ ++ T + LQ + PP +++Y Q Sbjct: 326 ISALKERGIDGLFESIQAAYNAAMIKMPTPKITRVLQSAIERQQPPRAGLVRPKMRYAHQ 385 Query: 416 IQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 +PP ++ + I +SY RYL R F+L G P+R+ + S+NPY Sbjct: 386 GGMNPPVIVVHGNSLHAISDSYTRYLTQTFRKAFNLQGTPLRIQYNVSENPY 437 >gi|329116373|ref|ZP_08245090.1| ribosome biogenesis GTPase Der [Streptococcus parauberis NCFD 2020] gi|326906778|gb|EGE53692.1| ribosome biogenesis GTPase Der [Streptococcus parauberis NCFD 2020] Length = 436 Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 133/462 (28%), Positives = 239/462 (51%), Gaps = 31/462 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AIVG PNVGKSTLFNR+ +++++V + G+TRDR+Y F+++DT GI D Sbjct: 5 TVAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTTGEWLNRKFSLIDTGGI-DD 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + +Q+ Q ++A++EA +I+F++ K G+T D ++ L + N P+I+ NK+D Sbjct: 64 VDAPFMEQIKHQAQIAMDEADVIVFVVSGKEGVTDADEYVSKILYRTNKPVILAVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + Y+ Y+L + +S+ H +GT ++ I + N P+E+ E N Sbjct: 124 PEMRNDIYDFYALGLGDPYPVSSVHGIGTGDVLDAIVE-------NLPIEVTEEN----- 171 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 +R +++GRPNVGKS+LIN +LG +R++ +G TRD++ Sbjct: 172 -----------------DDVIRFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAID 214 Query: 244 ISW-NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 S+ + + DTAGMRK ++ E+ E+ +V ++M+++ + +++++A + Sbjct: 215 TSFKDEDGQEFTMIDTAGMRKSGKVYENTEKYSVMRAMRAIDRSDVVLMVINAEEGIREY 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D RI G +++ +NKWD + + + + I +S TG+ Sbjct: 275 DKRIAGFAHEAGKGMIIVVNKWDTLEKDNHTVSKWEADIRDQFQFLSYAPIIFVSAETGQ 334 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 L+ L + I+ RI ++ LN + NP PT + ++ Y TQ+ PP+ Sbjct: 335 RLNKLPEMIKRISDSQSRRIPSAVLNDVIMDAIAINPTPTDKGKRLKIFYATQVSVKPPT 394 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 F++F + SY R+L N++R F+ G PI + + K Sbjct: 395 FVVFVNEEELMHFSYLRFLENQIRAAFTFEGTPIHLIARKRK 436 >gi|319938676|ref|ZP_08013040.1| GTP-binding protein engA [Streptococcus anginosus 1_2_62CV] gi|319811726|gb|EFW07992.1| GTP-binding protein engA [Streptococcus anginosus 1_2_62CV] Length = 436 Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 140/462 (30%), Positives = 241/462 (52%), Gaps = 31/462 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAIVG PNVGKSTLFNR+ +++++V + G+TRDR+Y A F+++DT GI D Sbjct: 5 TIAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATADWLNRKFSMIDTGGI-DD 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + +Q+ Q E+A+ EA +I+F++ K GIT D + L K + PII+ NK+D Sbjct: 64 VDAPFMEQIKHQAEIAMEEADVIVFVVSGKEGITDADEYVARMLYKTHKPIILAVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + ++ Y+L + +S+ H +GT ++ L+ I N NEE Sbjct: 124 PEMRSEIFDFYALGLGDPYPVSSVHGIGTGDV----------------LDAIVENLPNEE 167 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV- 242 + EN + ++ +++GRPNVGKS+LIN +LG +R++ +G TRD++ Sbjct: 168 A-AEN------------TDMIKFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAID 214 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 ++ + + + DTAGMRK ++ E+ E+ +V ++M+++ + +++L+A + Sbjct: 215 TVFTDSEGQEFTMIDTAGMRKSGKVYENTEKYSVMRAMRAIDRSDVVLMVLNAEEGIREY 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D RI G +++ +NKWD + +Q+ + I +S T + Sbjct: 275 DKRIAGFAHEAGKGIIIVVNKWDTLEKDNKTMQNWEADIRDQFQYLSYAPIVFVSALTKQ 334 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 L L + I++ TRI ++ LN + NP PT + ++ Y TQ+ + PP+ Sbjct: 335 RLHKLPEMIKNISQSQNTRIPSAVLNDVIMDAIAINPTPTDKGKRLKIFYATQVATKPPT 394 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 F+IF + SY R+L N++R F G PI + + K Sbjct: 395 FIIFVNEEELMHFSYMRFLENQIRKAFVFEGTPIHLIARKRK 436 >gi|240146998|ref|ZP_04745599.1| ribosome-associated GTPase EngA [Roseburia intestinalis L1-82] gi|257200843|gb|EEU99127.1| ribosome-associated GTPase EngA [Roseburia intestinalis L1-82] gi|291535193|emb|CBL08305.1| ribosome-associated GTPase EngA [Roseburia intestinalis M50/1] gi|291539724|emb|CBL12835.1| ribosome-associated GTPase EngA [Roseburia intestinalis XB6B4] Length = 441 Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 140/465 (30%), Positives = 237/465 (50%), Gaps = 35/465 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFN L +++++V + PG+TRDR+Y F ++DT GI Sbjct: 6 VAIVGRPNVGKSTLFNVLAGERISIVKDTPGVTRDRIYADVTWLDYHFTMIDTGGIEPDS 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 I QM +Q E+AI A +I+FL D + G+ D + LR+ P+++V NK+D+ Sbjct: 66 KDIILSQMREQAEIAIATADVIIFLTDVRQGLQDSDSKVADMLRRSGKPVVLVVNKVDSF 125 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + YE Y+L + ISA LG ++ + K F P + ++ +E Sbjct: 126 EKFMPDVYEFYNLGIGDPYPISASSMLGLGDMLDEVVKNF----PEY-----NKDEAEDE 176 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 PK +A++G+PNVGKS+LIN+L +R++ +G TRD++ Sbjct: 177 RPK-------------------VAIIGKPNVGKSSLINKLAQEDRVIVSDIAGTTRDAID 217 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + DTAG+R+ ++I E +E+ ++ +++ +V + I+++DAT +QD Sbjct: 218 TDIRYNGKEYVFIDTAGLRRKNKIKEEIERYSIIRAVTAVERADVCIIVIDATEGVTEQD 277 Query: 304 LRIVDSVFNTGHAVVLALNKWDMV--SDKLNLLQDLRTKAIKN-LPQIGDIYINTISGRT 360 +I G +++A+NKWD + DK + + I + +P ++I+ SG+ Sbjct: 278 AKIAGIAHERGKGIIIAVNKWDAIEKDDKTIYRHTEKIRQILSFMPYAEILFISAKSGQR 337 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 L D++ V+E N + R+ T LN + + PP+ + ++ Y TQ+ P Sbjct: 338 LNKLFDMIDLVIENNSM---RVATGVLNEIVAEAVAMQQPPSDKGKRLKIYYTTQVAVKP 394 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 P+F+IF + SY RYL NR+R F G ++ + K Sbjct: 395 PTFVIFVNDKELMHFSYTRYLENRIRDTFGFRGTALKFIIRERKE 439 >gi|325696369|gb|EGD38260.1| ribosome-associated GTPase EngA [Streptococcus sanguinis SK160] Length = 436 Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 141/462 (30%), Positives = 241/462 (52%), Gaps = 31/462 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAIVG PNVGKSTLFNR+ +++++V + G+TRDR+Y A F+I+DT GI D Sbjct: 5 TIAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATASWLNRKFSIIDTGGI-DD 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + +Q+ Q E+A++EA +I+F++ K GIT D + L K + PII+ NK+D Sbjct: 64 VDAPFMEQIKHQAEIAMDEADVIVFVVSGKEGITDADEYVARMLYKTHKPIILAVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + ++ Y+L + +S+ H +GT ++ L+ I N NEE Sbjct: 124 PEMRNEIFDFYALGLGDPFPVSSVHGIGTGDV----------------LDAIVENLPNEE 167 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV- 242 +E +K +++GRPNVGKS+LIN +LG R++ +G TRD++ Sbjct: 168 ------IAENPDMIK-------FSLIGRPNVGKSSLINAILGEERVIASPVAGTTRDAID 214 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 ++ + + + DTAGMRK ++ E+ E+ +V ++M+++ + +++L+A + Sbjct: 215 TVFTDSEGQEFTMIDTAGMRKSGKVYENTEKYSVMRAMRAIDRSDVVLMVLNAEEGIREY 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D RI G +++ +NKWD + + ++D + I +S T + Sbjct: 275 DKRIAGFAHEAGKGMIIVVNKWDTLEKDNHTMKDWEADIRDQFQYLSYAPIIFVSALTKQ 334 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 L L + +I++ TRI ++ LN + NP PT + ++ Y TQ+ + PP+ Sbjct: 335 RLHKLPDMIKQISQSQNTRIPSAVLNDVIMDAIAINPTPTDKGKRLKIFYATQVATKPPT 394 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 F+IF + SY R+L N++R F G PI + + K Sbjct: 395 FVIFVNEEELMHFSYLRFLENQIRKAFVFEGTPIHLIARKRK 436 >gi|269956364|ref|YP_003326153.1| cytidylate kinase [Xylanimonas cellulosilytica DSM 15894] gi|269305045|gb|ACZ30595.1| cytidylate kinase [Xylanimonas cellulosilytica DSM 15894] Length = 725 Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 144/457 (31%), Positives = 226/457 (49%), Gaps = 31/457 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKSTL NR++ ++ AVV + PG+TRDR+ A G F++VDT G + Sbjct: 293 LAIIGRPNVGKSTLVNRVIGRREAVVEDKPGVTRDRVTYPAEWAGREFHVVDTGGW-EVD 351 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I ++ +Q E+AI A ++F++D+ G T D + LR+ P+++ +NK+D Sbjct: 352 VAGIESKVAEQAEVAITLADAVMFVVDATVGATATDERVVELLRRSGKPVVLAANKVDGP 411 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + ++SL E ISA H G +L + K H E Sbjct: 412 SGEADAAYLWSLGLGEPHPISALHGRGVGDLLEAAMAVLP-KVSEH----------GELR 460 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P + P R+A+VGRPNVGKS+L+N++ G R++ +G TRD V Sbjct: 461 P---------------TGPRRVALVGRPNVGKSSLLNKVAGSERVVVDEIAGTTRDPVDE 505 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 K P DTAG+R+ T + ++ ++ E +VLLDA+ P +QD Sbjct: 506 LILLKGVPYWFVDTAGIRRRVHQTSGADFYASLRTAAAIEKAEVAVVLLDASQPLTEQDT 565 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 R++ V + G A+V+A NKWD++ + L + K L Q+ +S RTG Sbjct: 566 RVLQQVVDAGRALVIAYNKWDLMDEDRRPY--LEREIEKELVQLTWAPRVNVSARTGWHT 623 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 D L +V + W RI T LN++L + P P + R+ + TQ + PP F+ Sbjct: 624 DRLAGAVERSLESWDMRIPTGRLNAFLGELVAAKPHPLRGGKQPRILFATQASTRPPRFV 683 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 IF + + Y+R++ RLR F G PI + + Sbjct: 684 IFAS--GFLEAGYRRFIERRLRETFGFEGTPIEISVR 718 >gi|309798864|ref|ZP_07693125.1| GTP-binding protein EngA [Streptococcus infantis SK1302] gi|308117513|gb|EFO54928.1| GTP-binding protein EngA [Streptococcus infantis SK1302] Length = 436 Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 142/466 (30%), Positives = 247/466 (53%), Gaps = 39/466 (8%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AIVG PNVGKSTLFNR+ +++++V + G+TRDR+Y F+++DT GI D Sbjct: 5 TVAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRSFSMIDTGGI-DD 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + +Q+ Q E+A+ EA +I+F++ K GIT D + L K + P+I+ NK+D Sbjct: 64 VDAPFMEQIKHQAEIAMEEADVIVFVVSGKEGITDADEYVARKLYKTHKPVILAVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + Y+ Y+L E + IS+ H +GT ++ I + N P E+ EE Sbjct: 124 PEMRNDIYDFYALGLGEPLPISSVHGIGTGDVLDAIVE-------NLPHEI------EEE 170 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 +P ++ +++GRPNVGKS+LIN +LG +R++ +G TRD++ Sbjct: 171 NP----------------DVIKFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAID 214 Query: 244 ISW-NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + + + DTAGMRK ++ E+ E+ +V ++M+++ + +++L+A + Sbjct: 215 THFTDADGQEFTMIDTAGMRKSGKVYENTEKYSVMRAMRAIDRSDVVLMVLNAEEGIREY 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDK----LNLLQDLRTKAIKNLPQIGDIYINTISG 358 D RI G +++ +NKWD + N +D+R + + LP I+++ + Sbjct: 275 DKRIAGFAHEAGKGMIIVVNKWDTLEKDNHTMKNWEEDIREQ-FQYLPYAPIIFVSAL-- 331 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 T + L L + +I++ TRI ++ LN + NP PT + ++ Y TQ+ + Sbjct: 332 -TKQRLHKLPEMIKQISESQNTRIPSAVLNDVIMDAIAINPTPTDKGKRLKIFYATQVAT 390 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 PP+F+IF + SY R+L N++R F G PI + + K Sbjct: 391 KPPTFVIFVNEEELMHFSYLRFLENQIRKAFVFEGTPIHLIARKRK 436 >gi|219682497|ref|YP_002468881.1| 50S ribosomal subunit stability factor (YfgK) [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|254783142|sp|B8D8C1|DER_BUCAT RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|219622230|gb|ACL30386.1| 50S ribosomal subunit stability factor (YfgK) [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|311086326|gb|ADP66408.1| GTP-binding protein EngA [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086900|gb|ADP66981.1| GTP-binding protein EngA [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] Length = 453 Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 164/479 (34%), Positives = 261/479 (54%), Gaps = 39/479 (8%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAII--NGVIFNIVDTA 58 MI I ++G NVGKSTLFN L K + A+V N+PGITRDR YG + N I ++DTA Sbjct: 1 MIPIIVLIGRTNVGKSTLFNVLTKTRDALVANYPGITRDRQYGYCKLQSNKKII-LIDTA 59 Query: 59 GIADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVS 118 G+ D K I KQ QT +AI EAHLILFL++++ G+ P ++ I+ +RK I+V Sbjct: 60 GL-DIKLNEIEKQAQAQTLIAIKEAHLILFLVNARDGLMPQEYEISKNIRKYQKKTILVI 118 Query: 119 NKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL-HSVIFKIFKQKYPNHPLEMIEN 177 NK+D E YSL F++I +ISA H+ G + L + + +K+ ++ EN Sbjct: 119 NKIDGINEASKINEFYSLGFEKIQKISASHNQGINTLINRYLIPWISEKFKK---KITEN 175 Query: 178 NKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGI 237 ++ E +K I+ +++A +GRPNVGKSTLIN +L R++T + G Sbjct: 176 LYKDTE-------------LKKIA--IKVAFIGRPNVGKSTLINGILKEERMITSNTPGT 220 Query: 238 TRDSVS--ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDA 295 T DS+S I +N++N+ + DTAG K + ++ ++ K++Q++ ++++DA Sbjct: 221 TLDSISTPIKYNYENYT--LIDTAGASKKKKKINDFQRFSIIKTLQTIEKSNVILLIIDA 278 Query: 296 TIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNL--PQIGDIY- 352 ++ QDL + D + ++G +V+ +NK D L + K IK L ++ +Y Sbjct: 279 SLQTCHQDLSLADFIIHSGKGIVVVVNKCD-------LFNSVELKKIKELIKSKLKFLYF 331 Query: 353 --INTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRL 410 I+ IS +G+ L S+ E + K +I+TS L + ++ PP I R +L Sbjct: 332 SKIHFISALYKKGIFQLFKSIKESYEDSKRKISTSTLIRTMHIAIKKHQPPIIKGRRIKL 391 Query: 411 KYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIK 469 KY S+PP +I + YKRYLIN + G PI++ F+ ++NPY+K Sbjct: 392 KYAHLGSSNPPKIIIHGNQVKYLSLPYKRYLINFFYKTLKIKGTPIQIQFKDNENPYVK 450 >gi|289706512|ref|ZP_06502865.1| ribosome-associated GTPase EngA [Micrococcus luteus SK58] gi|289556770|gb|EFD50108.1| ribosome-associated GTPase EngA [Micrococcus luteus SK58] Length = 512 Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 149/457 (32%), Positives = 238/457 (52%), Gaps = 32/457 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA-DG 63 +AIVG PNVGKSTL NR++ ++ AVV + PG+TRDR+ A NG F +VDT G D Sbjct: 77 LAIVGRPNVGKSTLVNRIIGRREAVVEDVPGVTRDRVSYDAEWNGREFTVVDTGGWEHDA 136 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 K I +++ +Q ELA++ A ++F++D+ G+T D A+ S LR+K+ P+I+ +NK+D Sbjct: 137 KG--IHRRVAEQAELAVDVADAVVFVVDATVGMTATDEAVVSMLRRKDRPVIVAANKVDD 194 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + + ++SL F +SA H G ++L + EE Sbjct: 195 MVQEADAATLWSLGFGYPYPVSAVHGRGVADLLDAALEALP-----------------EE 237 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 S + G P RIA+VGRPNVGKS+L+N+L G +R++ +G TRD V Sbjct: 238 SAHGGLVPRG--------GPRRIALVGRPNVGKSSLLNKLAGSDRVVVDDLAGTTRDPVD 289 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 DTAG+R+ + + ++ ++ E +VLL+A +QD Sbjct: 290 ELVELGGRLWRFVDTAGIRRRQHMAHGADYYASLRTASALDRAEVAVVLLEAPQVVSEQD 349 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 +RI+ V ++G A+V+A NKWD V + L L + ++L + IS +TG Sbjct: 350 VRILQMVLDSGRALVIAFNKWDQVDEDRRL--QLAKEIDRDLAHVAWAPRVNISAKTGWH 407 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 D L+ ++ W TRI T LN++L + +P P + R+ + TQ+ S PP F Sbjct: 408 KDRLVPALDLALDSWDTRIPTGKLNAFLGELVAAHPHPLRGGKQPRILFATQVSSRPPKF 467 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCF 460 ++F T + Y+R+++ RLR F G P+ + Sbjct: 468 VLFTT--GFLDPGYRRFIVRRLRETFGFEGTPLEIGM 502 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 48/171 (28%), Positives = 84/171 (49%), Gaps = 12/171 (7%) Query: 203 PLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMR 262 P +A+VGRPNVGKSTL+NR++G + G+TRD VS W + DT G Sbjct: 74 PPVLAIVGRPNVGKSTLVNRIIGRREAVVEDVPGVTRDRVSYDAEWNGREFTVVDTGGWE 133 Query: 263 KPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALN 322 ++ + ++ +++ +V + + ++DAT+ D +V + V++A N Sbjct: 134 HDAK---GIHRRVAEQAELAVDVADAVVFVVDATVGMTATDEAVVSMLRRKDRPVIVAAN 190 Query: 323 KWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 K D +++Q+ + +L G Y +S G G+ DL+ + LE Sbjct: 191 KVD------DMVQEADAATLWSL---GFGYPYPVSAVHGRGVADLLDAALE 232 >gi|290579757|ref|YP_003484149.1| phosphoglycerate dehydrogenase [Streptococcus mutans NN2025] gi|254996656|dbj|BAH87257.1| phosphoglycerate dehydrogenase [Streptococcus mutans NN2025] Length = 436 Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 136/462 (29%), Positives = 240/462 (51%), Gaps = 31/462 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AIVG PNVGKS LFNR+ +++++V + G+TRDR+Y +A F+I+DT GI D Sbjct: 5 TVAIVGRPNVGKSALFNRIAGERISIVEDVEGVTRDRIYTKAEWLNRQFSIIDTGGI-DD 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + +Q+ Q ++A+ EA +I+F++ +K GIT D + L + + P+I+ NK+D Sbjct: 64 VDAPFMEQIKHQADIAMTEADVIVFVVSAKEGITDADEYVAKILYRTHKPVILAVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + Y+ Y+L + +S+ H +GT ++ I Sbjct: 124 PEMRSAIYDFYALGLGDPYPVSSAHGIGTGDVLDAIV----------------------- 160 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 +N+ +E + +I ++ +++GRPNVGKS+LIN +LG +R++ +G TRD++ Sbjct: 161 ---DNLPTEAQEESSDI---IKFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAID 214 Query: 244 ISW-NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 ++ + + + DTAGMRK ++ E+ E+ +V ++M+++ + +++L+A + Sbjct: 215 TTFTDEEGQEFTMIDTAGMRKSGKVYENTEKYSVMRAMRAIDRSDIVLMVLNAEEGIREY 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D RI G +V+ +NKWD + + N I I +S T + Sbjct: 275 DKRIAGFAHEAGKGIVVVVNKWDAIKKDNRTVAQWEADIRDNFQYIPYAPIVFVSAVTKQ 334 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 L L + ++++ TRI +S LN + NP PT + ++ Y TQ+ PP+ Sbjct: 335 RLHKLPDVIKQVSQSQNTRIPSSVLNDVVMDAVAINPTPTDKGKRLKIFYATQVSVKPPT 394 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 F+IF + SY R+L N++R F G PIR+ + K Sbjct: 395 FVIFVNEEELMHFSYLRFLENQIRQAFVFEGTPIRLIARKRK 436 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 64/130 (49%), Gaps = 13/130 (10%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAII-NGVIFNIVDTAGI 60 I +++G PNVGKS+L N ++ + + G TRD + G F ++DTAG+ Sbjct: 174 IIKFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTTFTDEEGQEFTMIDTAGM 233 Query: 61 -------ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIP 113 + + S+ + M AI+ + ++L +++++ GI YD I F + Sbjct: 234 RKSGKVYENTEKYSVMRAMR-----AIDRSDIVLMVLNAEEGIREYDKRIAGFAHEAGKG 288 Query: 114 IIIVSNKMDT 123 I++V NK D Sbjct: 289 IVVVVNKWDA 298 >gi|328946827|gb|EGG40964.1| ribosome-associated GTPase EngA [Streptococcus sanguinis SK1087] Length = 436 Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 141/462 (30%), Positives = 242/462 (52%), Gaps = 31/462 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAIVG PNVGKSTLFNR+ +++++V + G+TRDR+Y A F+I+DT GI D Sbjct: 5 TIAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATANWLNRKFSIIDTGGI-DD 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + +Q+ Q E+A++EA +I+F++ K GIT D + L K + PII+ NK+D Sbjct: 64 VDAPFMEQIKHQAEIAMDEADVIVFVVSGKEGITDADEYVARMLYKTHKPIILAVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + ++ Y+L + +S+ H +GT ++ L+ I N NEE Sbjct: 124 PEMRNEIFDFYALGLGDPFPVSSVHGIGTGDV----------------LDAIVENLPNEE 167 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV- 242 +E +K +++GRPNVGKS+LIN +LG +R++ +G TRD++ Sbjct: 168 ------VAENPDMIK-------FSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAID 214 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 ++ + + + DTAGMRK ++ E+ E+ +V ++M+++ + +++L+A + Sbjct: 215 TVFTDSEGQEFTMIDTAGMRKSGKVYENTEKYSVMRAMRAIDRSDVVLMVLNAEEGIREY 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D RI G +++ +NKWD + + ++D + I +S T + Sbjct: 275 DKRIAGFAHEAGKGMIIVVNKWDTLEKDNHTMKDWEEDIRDQFQYLSYAPIIFVSALTKQ 334 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 L L + +I++ TRI ++ LN + NP PT + ++ Y TQ+ + PP+ Sbjct: 335 RLHKLPDMIKQISQSQNTRIPSAVLNDVIMDAIAINPTPTDKGKRLKIFYATQVATKPPT 394 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 F+IF + SY R+L N++R F G PI + + K Sbjct: 395 FVIFVNEEELMHFSYLRFLENQIRKAFIFEGTPIHLIARKRK 436 >gi|328950011|ref|YP_004367346.1| GTP-binding protein engA [Marinithermus hydrothermalis DSM 14884] gi|328450335|gb|AEB11236.1| GTP-binding protein engA [Marinithermus hydrothermalis DSM 14884] Length = 431 Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 136/467 (29%), Positives = 249/467 (53%), Gaps = 45/467 (9%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAII--NGVIFNIVDTAGIAD 62 + IVG PNVGKS+L+NRL+ ++ AVV + PG+TRD +A+I + F +VDT G+ Sbjct: 4 VVIVGRPNVGKSSLYNRLLGRRDAVVADEPGVTRD--LKEAVIETDRGRFKLVDTGGLWS 61 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 G ++ ++ + AI +A L+LFL+D +A T D + +LR++ P+++V+ K+D Sbjct: 62 GDAWE--PKIQEKVDRAIQDADLVLFLVDGRADPTQADFEVADYLRRQPTPVLLVATKVD 119 Query: 123 TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 ++ E+Y+L F + S EH G L I+ ++ P R + Sbjct: 120 DPKHEQYLGELYALGFGAPIPTSVEHRRGLDALVDAIW----ERLP----------VRQD 165 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 E + + + LR+A++GRPN GKS+L+N +LG R++ Q G TRD++ Sbjct: 166 EDAEPEVEA------------LRLAIIGRPNAGKSSLMNAILGEERVIVSEQPGTTRDAI 213 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE-- 300 + +++ + DTAG+RK R ++E +++S + +R + ++++D PFE Sbjct: 214 DVEFDYGGQRFVLVDTAGIRK--RPETAVEYFAIQRSHRVIREADVVVLVVD---PFELG 268 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMV--SDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 ++L++ + G +LA++KWD V + + ++R K + +L ++ IY + + Sbjct: 269 DRELKMANEALEAGRPTILAVSKWDRVPKDEARRVRAEIREK-LAHLERLPLIYTSAV-- 325 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 TG+ L L+ + + L +TR TS LN WL ++ P + ++ + TQ + Sbjct: 326 -TGQNLHKLLSEAVRLYHLARTRFETSELNRWLDVWLMRTRVPNFKGKPLKIFFATQPEV 384 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 +PP+F+ F P + +++ YL NR+ + L IP R+ F+ + Sbjct: 385 APPTFVFFVNHPEFVTRAFENYLKNRIGEDLGLREIPFRLVFRGRRE 431 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 4/121 (3%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP 264 ++ +VGRPNVGKS+L NRLLG + + G+TRD ++ DT G+ Sbjct: 3 KVVIVGRPNVGKSSLYNRLLGRRDAVVADEPGVTRDLKEAVIETDRGRFKLVDTGGLWS- 61 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 ++ E K +K ++++ + + L+D + D + D + V+L K Sbjct: 62 ---GDAWEPKIQEKVDRAIQDADLVLFLVDGRADPTQADFEVADYLRRQPTPVLLVATKV 118 Query: 325 D 325 D Sbjct: 119 D 119 >gi|314967527|gb|EFT11626.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL037PA1] Length = 456 Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 140/458 (30%), Positives = 232/458 (50%), Gaps = 40/458 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ A +G F +VDT G A Sbjct: 24 VAVVGRPNVGKSTLVNRILGRRAAVVQDVPGVTRDRVSYDAEWSGRQFVLVDTGGWAS-D 82 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +A + +Q ELAI+ A +LF++D+ G T D A+ LR+ P+++ +NK+D Sbjct: 83 ASGMAAMIAEQAELAISTADAVLFVVDANVGTTDEDEAVVQVLRQSRKPVVVAANKVDNA 142 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + +++L E +SA H G+ +L + + Sbjct: 143 RGESEAATMWNLGLGEPRPVSAMHGRGSGDLLDALIAVL--------------------- 181 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 PKE ++S ++ P R+A+VG+PNVGKS+L+NR+ NR++ SG T D V Sbjct: 182 PKE------QASYESSDGPRRVAIVGKPNVGKSSLLNRIARQNRVVVSDISGTTVDPVDE 235 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + DTAG+RK + E ++ ++ E +V++DA+ QDL Sbjct: 236 LVTVGGTVYQFIDTAGLRKRVKEASGHEYYASLRTQAAIERAEVCVVVIDASESISDQDL 295 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLR----TKAIKNLPQIGDIYINTISGRT 360 RI+ V N G A+V+A NKWD+ ++ + +A P++ IS Sbjct: 296 RILTMVENAGRAMVIAYNKWDLTDEERRRYLEREIERDVQAYSWAPRV------NISALN 349 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G +D L ++ + W+ RI+T LN++L + +P P + R+ + TQ + P Sbjct: 350 GRNVDKLEKAIETAAEGWEMRISTGKLNAFLGRLAAAHPHPVRGGKQPRILFGTQAHNCP 409 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 P+F +F + + Y R++I RLR +F +G P+ + Sbjct: 410 PTFALFTS--GVFDQGYVRFIIRRLREDFGFAGSPVHV 445 >gi|270293072|ref|ZP_06199283.1| ribosome-associated GTPase EngA [Streptococcus sp. M143] gi|270279051|gb|EFA24897.1| ribosome-associated GTPase EngA [Streptococcus sp. M143] Length = 436 Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 141/466 (30%), Positives = 248/466 (53%), Gaps = 39/466 (8%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAIVG PNVGKSTLFNR+ +++++V + G+TRDR+Y F+++DT GI D Sbjct: 5 TIAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRSFSMIDTGGI-DD 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + +Q+ Q E+A+ EA +I+F++ K GIT D + L K + P+I+ NK+D Sbjct: 64 VDAPFMEQIKHQAEIAMEEADVIVFVVSGKEGITDADEYVARKLYKTHKPVILAVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + Y+ Y+L E + IS+ H +GT ++ I + N P E+ EE Sbjct: 124 PEMRNDIYDFYALGLGEPLPISSVHGIGTGDVLDAIVE-------NLPHEV------EEE 170 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 +P ++ +++GRPNVGKS+LIN +LG +R++ +G TRD++ Sbjct: 171 NP----------------DVIKFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAID 214 Query: 244 ISW-NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + + + DTAGMRK ++ E+ E+ +V ++M+++ + +++L+A + Sbjct: 215 THFTDADGQEFTMIDTAGMRKSGKVYENTEKYSVMRAMRAIDRSDVVLMVLNAEEGIREY 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLL----QDLRTKAIKNLPQIGDIYINTISG 358 D RI G +++ +NKWD + + + +D+R + + LP ++++ + Sbjct: 275 DKRIAGFAHEAGKGMIIVVNKWDTLEKDNHTMKKWEEDIREQ-FQYLPYAPIVFVSAL-- 331 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 T + L L + +I++ TRI ++ LN + NP PT + ++ Y TQ+ + Sbjct: 332 -TKQRLHKLPEMIKQISESQNTRIPSAVLNDVIMDAIAINPTPTDKGKRLKIFYATQVAT 390 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 PP+F+IF + SY R+L N++R F G PI + + K Sbjct: 391 KPPTFVIFVNEEELMHFSYLRFLENQIRKAFVFEGTPIHLIARKRK 436 >gi|322388795|ref|ZP_08062392.1| ribosome-associated GTPase EngA [Streptococcus infantis ATCC 700779] gi|321140414|gb|EFX35922.1| ribosome-associated GTPase EngA [Streptococcus infantis ATCC 700779] Length = 436 Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 142/466 (30%), Positives = 248/466 (53%), Gaps = 39/466 (8%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AIVG PNVGKSTLFNR+ +++++V + G+TRDR+Y F+++DT GI D Sbjct: 5 TVAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRSFSMIDTGGI-DD 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + +Q+ QTE+A+ EA +I+F++ K GIT D + L K + P+I+ NK+D Sbjct: 64 VDAPFMEQIKHQTEIAMEEADVIVFVVSGKEGITDADEYVARKLYKTHKPVILAVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + Y+ Y+L E + IS+ H +GT ++ I + N P E+ +E Sbjct: 124 PEMRNDIYDFYALGLGEPLPISSVHGIGTGDVLDAIVE-------NLPHEV------EDE 170 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 +P ++ +++GRPNVGKS+LIN +LG +R++ +G TRD++ Sbjct: 171 NP----------------DVIKFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAID 214 Query: 244 ISW-NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + + + DTAGMRK ++ E+ E+ +V ++M+++ + +++L+A + Sbjct: 215 THFTDADGQEFTMIDTAGMRKSGKVYENTEKYSVMRAMRAIDRSDVVLMVLNAEEGIREY 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDK----LNLLQDLRTKAIKNLPQIGDIYINTISG 358 D RI G +++ +NKWD + N +D+R + + LP I+++ + Sbjct: 275 DKRIAGFAHEAGKGMIIVVNKWDTLEKDNHTMKNWEEDIREQ-FQYLPYAPIIFVSAL-- 331 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 T + L L + +I++ TRI ++ LN + NP PT + ++ Y TQ+ + Sbjct: 332 -TKQRLHKLPEMIKQISESQNTRIPSAVLNDVIMDAIAINPTPTDKGKRLKIFYATQVAT 390 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 PP+F+IF + SY R+L N++R F G PI + + K Sbjct: 391 KPPTFVIFVNEEELMHFSYLRFLENQIRKAFVFEGTPIHLIARKRK 436 >gi|269114942|ref|YP_003302705.1| GTP-binding protein engA [Mycoplasma hominis] gi|268322567|emb|CAX37302.1| GTP-binding protein engA [Mycoplasma hominis ATCC 23114] Length = 441 Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 143/460 (31%), Positives = 240/460 (52%), Gaps = 35/460 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKSTLFN+++ K+ ++V + PG+TRDRLY AI G F +VDT GI + Sbjct: 7 VAIIGKPNVGKSTLFNKIINKRKSIVYDTPGVTRDRLYEDAIWTGKKFRVVDTGGIT-IE 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + KQ+ Q ++AI+EA++I+FLID K +T D+ + S LRK N +++ NK++ Sbjct: 66 DEDFKKQIKLQAQIAIDEANVIVFLIDGKEPLTVEDYYVASLLRKSNKHVLLAVNKLEG- 124 Query: 125 IAQRNFYE--IYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 + N+Y+ IYSL F EI ISA H G L Sbjct: 125 -SNVNYYDNSIYSLGFDEIFPISAIHGDGIGNLL-------------------------- 157 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 + I + S K++ ++A++G+ NVGKSTL+N L R + + G TRDSV Sbjct: 158 ----DKIIEKLNFSDKDVESYFKLALLGKTNVGKSTLLNTLANEERSIVSNVEGTTRDSV 213 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 S E+ DTAG+++ S++TES+E + ++ QS+ +++LDAT Sbjct: 214 SSLIKINGEIFEVVDTAGIKRKSKLTESVEHYALMRANQSIEDANLCLLVLDATEEVSHF 273 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 ++ + ++L +NKWD++ N ++ + +K + + I IS + Sbjct: 274 SQNVIGIAYELKKPLILIVNKWDLIEKDTNTMEKYKKDLLKKVKFVDWSPIVFISAKDNL 333 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 ++ L +++++ +I T+ LN + Q+ P +I R + + QI S P+ Sbjct: 334 RINKLRDTIIQVKNNISRKINTNQLNDLMATAQMIRPASSINGRRLSITFARQIDGSIPT 393 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 FL+F + +Y RY+ N++R N+ SG PI + ++ Sbjct: 394 FLLFVNNVDLAHFTYLRYIENQIRENYDFSGTPIELVLRN 433 Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 51/171 (29%), Positives = 85/171 (49%), Gaps = 11/171 (6%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + +A++G NVGKSTL N L ++ ++V N G TRD + ING IF +VDTAGI Sbjct: 175 FKLALLGKTNVGKSTLLNTLANEERSIVSNVEGTTRDSVSSLIKINGEIFEVVDTAGIKR 234 Query: 63 GKNC--SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 S+ + +I +A+L L ++D+ ++ + + + P+I++ NK Sbjct: 235 KSKLTESVEHYALMRANQSIEDANLCLLVLDATEEVSHFSQNVIGIAYELKKPLILIVNK 294 Query: 121 MDTRIAQRNFYEIYS---------LDFKEIVEISAEHDLGTSELHSVIFKI 162 D N E Y +D+ IV ISA+ +L ++L I ++ Sbjct: 295 WDLIEKDTNTMEKYKKDLLKKVKFVDWSPIVFISAKDNLRINKLRDTIIQV 345 >gi|257055518|ref|YP_003133350.1| GTP-binding protein EngA [Saccharomonospora viridis DSM 43017] gi|256585390|gb|ACU96523.1| small GTP-binding protein domain/GTP-binding conserved hypothetical protein [Saccharomonospora viridis DSM 43017] Length = 470 Score = 231 bits (588), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 145/455 (31%), Positives = 227/455 (49%), Gaps = 33/455 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ A G F +VDT G G Sbjct: 36 VAVVGRPNVGKSTLVNRILGRREAVVQDTPGVTRDRISYDATWRGRRFTLVDTGGWEPGA 95 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + + Q E A++EA ++L ++D+ G T D A+ LR+ P+++V+NK+D+ Sbjct: 96 S-GLQASITAQAERAMSEADVVLLVVDAVVGPTATDEAVAKVLRRSKRPVLLVANKVDSE 154 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 ++SL E +SA H + +L + E+ Sbjct: 155 SLLPEVASLWSLGLGEPYAVSALHGRSSGDLLDAVVDALP------------------EA 196 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P+E E + P R+A+VG+PNVGKS+L+N+L G R + S +G T D V Sbjct: 197 PRETGLVE--------AGPRRVALVGKPNVGKSSLLNKLTGEQRAVVDSVAGTTVDPVDS 248 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 DTAG+RK + E ++ ++ E IVLLDA+ P +QDL Sbjct: 249 LVELDGQLWRFIDTAGLRKRVQTASGTEYYASLRTKNAIDAAEVVIVLLDASEPLSEQDL 308 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLR-TKAIKNLPQIGDIYINTISGRTGEG 363 RIV SV + G A+VLA NKWD+V ++ D + + +P + ++ ++GR Sbjct: 309 RIVTSVADAGRALVLAFNKWDLVDEERRHQLDREIDRGLVRVPWAERVNVSALTGRAVHK 368 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 L + + L W R+ T LNSWL PPP + ++ + TQ PP+ Sbjct: 369 LAPALRTAL---TSWDQRVPTGQLNSWLSDLIAATPPPVRGGKQPKVLFATQAGVRPPTL 425 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 ++F T + Y+R+L + R F +G PIR+ Sbjct: 426 VLFTT--GFLEAGYRRFLERKFREQFGFTGTPIRI 458 >gi|332201131|gb|EGJ15202.1| GTP-binding protein engA [Streptococcus pneumoniae GA47901] Length = 436 Score = 231 bits (588), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 142/466 (30%), Positives = 247/466 (53%), Gaps = 39/466 (8%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAIVG PNVGKSTLFNR+ +++++V + G+TRDR+Y F+++DT GI D Sbjct: 5 TIAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRSFSMIDTGGI-DD 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + +Q+ Q E+A+ EA +I+F++ K GIT D + L K + P+I+ NK+D Sbjct: 64 VDAPFMEQIKHQAEIAMEEADVIVFVVSGKEGITDADEYVARKLYKTHKPVILAVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + Y+ Y+L E + IS+ H +GT ++ I + N P N+ EE Sbjct: 124 PEMRNDIYDFYALGLGEPLPISSVHGIGTGDVLDAIVE-------NLP------NEYEEE 170 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 +P ++ +++GRPNVGKS+LIN +LG +R++ +G TRD++ Sbjct: 171 NP----------------DVIKFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAID 214 Query: 244 ISW-NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + + + DTAGMRK ++ E+ E+ +V ++M+++ + +++++A + Sbjct: 215 THFTDTDGQEFTMIDTAGMRKSGKVYENTEKYSVMRAMRAIDRSDVVLMVINAEEGIREY 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDK----LNLLQDLRTKAIKNLPQIGDIYINTISG 358 D RI G +++ +NKWD + N +D+R + + LP I+++ + Sbjct: 275 DKRIAGFAHEAGKGMIIVVNKWDTLEKDNHTMKNWEEDIREQ-FQYLPYAPIIFVSAL-- 331 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 T + L L + +I++ TRI ++ LN + NP PT + ++ Y TQ+ + Sbjct: 332 -TKQRLHKLPEMIKQISESQNTRIPSAVLNDVIMDAIAINPTPTDKGKRLKIFYATQVAT 390 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 PP+F+IF + SY R+L N++R F G PI + + K Sbjct: 391 KPPTFIIFVNEEELMHFSYLRFLENQIRKAFVFEGTPIHLIARKRK 436 >gi|330443932|ref|YP_004376918.1| GTP-binding protein engA [Chlamydophila pecorum E58] gi|328807042|gb|AEB41215.1| GTP-binding protein engA [Chlamydophila pecorum E58] Length = 483 Score = 231 bits (588), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 149/475 (31%), Positives = 237/475 (49%), Gaps = 20/475 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAI+G PNVGKS+LFNRL K+ +A+V G TRDRLYG A I ++DT G+ Sbjct: 4 IAILGRPNVGKSSLFNRLCKRSLAIVNAEEGTTRDRLYGSAQICDSTIQVIDTGGVNKDS 63 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 K + Q + EA L+L ++D + GIT D + LR N PII+V+NK D+R Sbjct: 64 QDHFQKHIFKQALVGAKEADLLLLVVDIRCGITEQDMQLAKLLRPLNKPIILVANKADSR 123 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFK--QKYPNHPLEMIENNKRNE 182 + +E+YSL EIV SA H L I ++ K + P P + + ++ E Sbjct: 124 KDEFGIHELYSLGIPEIVVTSAAHGKHIDTLVHKIQRLAKIPEIQPESPQDDEDLHEEKE 183 Query: 183 -------ESPKENITSEGKSSV---------KNISKPLRIAVVGRPNVGKSTLINRLLGY 226 E+ E + E S ++PL+IA++GRPNVGKS++IN LL Sbjct: 184 LLCDKESEAIFEEVFDENHESFFVEDPQLPPLETNQPLKIALIGRPNVGKSSIINGLLNE 243 Query: 227 NRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTC 286 R +T + G TRD+V I + ++ DTAG+RK + S+E + ++ +++ Sbjct: 244 ERCITDNIPGTTRDNVDILYTKEDRSYLFIDTAGLRKMKSVKNSVEWISTSRTEKAISRA 303 Query: 287 ETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLP 346 + ++++DAT D RI+ + +L +NKWD++ ++ + P Sbjct: 304 DICLLVVDATQGLSSYDKRILSLISKEKKPHILLVNKWDLMHSI--RMEHYCRDVLATDP 361 Query: 347 QIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNR 406 +G I IS L + ++ E++++ ++ T +N L ++ P I R Sbjct: 362 YLGQARILCISALKKRNLSQIFRAIDELHEVISRKVPTPMVNKTLASALQKHHPQVINGR 421 Query: 407 YNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 R+ Y Q SSP FL+F + + + Y+ YL N L+ F L GIP + F+ Sbjct: 422 RLRIYYAIQKTSSPFQFLLFINRKSLLTKHYENYLKNSLKTTFKLHGIPFDLTFK 476 Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 45/174 (25%), Positives = 85/174 (48%), Gaps = 11/174 (6%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 LRIA++GRPNVGKS+L NRL + + ++ G TRD + S + I++ DT G+ K Sbjct: 2 LRIAILGRPNVGKSSLFNRLCKRSLAIVNAEEGTTRDRLYGSAQICDSTIQVIDTGGVNK 61 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 S+ + ++ K+++ + + ++++D +QD+++ + ++L NK Sbjct: 62 DSQ--DHFQKHIFKQALVGAKEADLLLLVVDIRCGITEQDMQLAKLLRPLNKPIILVANK 119 Query: 324 WDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKL 377 D D+ I L +G I S G+ +D L+ + + K+ Sbjct: 120 ADSRKDEF---------GIHELYSLGIPEIVVTSAAHGKHIDTLVHKIQRLAKI 164 >gi|289425429|ref|ZP_06427206.1| ribosome-associated GTPase EngA [Propionibacterium acnes SK187] gi|289154407|gb|EFD03095.1| ribosome-associated GTPase EngA [Propionibacterium acnes SK187] gi|313764267|gb|EFS35631.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL013PA1] gi|313791953|gb|EFS40054.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL110PA1] gi|313801564|gb|EFS42804.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL110PA2] gi|313812757|gb|EFS50471.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL025PA1] gi|313816358|gb|EFS54072.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL059PA1] gi|313827352|gb|EFS65066.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL063PA2] gi|313838918|gb|EFS76632.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL086PA1] gi|314915744|gb|EFS79575.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL005PA4] gi|314917888|gb|EFS81719.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL050PA1] gi|314920270|gb|EFS84101.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL050PA3] gi|314931490|gb|EFS95321.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL067PA1] gi|314955499|gb|EFS99902.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL027PA1] gi|314957875|gb|EFT01978.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL002PA1] gi|314962609|gb|EFT06709.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL082PA1] gi|315077825|gb|EFT49876.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL053PA2] gi|315098722|gb|EFT70698.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL059PA2] gi|315101509|gb|EFT73485.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL046PA1] gi|315108797|gb|EFT80773.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL030PA2] gi|327450594|gb|EGE97248.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL087PA3] gi|327453328|gb|EGE99982.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL092PA1] gi|327454067|gb|EGF00722.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL083PA2] gi|328753149|gb|EGF66765.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL025PA2] gi|328754012|gb|EGF67628.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL087PA1] Length = 456 Score = 231 bits (588), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 140/458 (30%), Positives = 232/458 (50%), Gaps = 40/458 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ A +G F +VDT G A Sbjct: 24 VAVVGRPNVGKSTLVNRILGRRAAVVQDVPGVTRDRVSYDAEWSGRQFVLVDTGGWAS-D 82 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +A + +Q ELAI+ A +LF++D+ G T D A+ LR+ P+++ +NK+D Sbjct: 83 ASGMAAMIAEQAELAISTADAVLFVVDANVGTTDEDEAVVQVLRQSRKPVVVAANKVDNA 142 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + +++L E +SA H G+ +L + + Sbjct: 143 RGESEAATMWNLGLGEPHPVSAMHGRGSGDLLDALIAVL--------------------- 181 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 PKE ++S ++ P R+A+VG+PNVGKS+L+NR+ NR++ SG T D V Sbjct: 182 PKE------QASYESSDGPRRVAIVGKPNVGKSSLLNRIARQNRVVVSDISGTTVDPVDE 235 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + DTAG+RK + E ++ ++ E +V++DA+ QDL Sbjct: 236 LVTVGGTVYQFIDTAGLRKRVKEASGHEYYASLRTQAAIERAEVCVVVIDASESISDQDL 295 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLR----TKAIKNLPQIGDIYINTISGRT 360 RI+ V N G A+V+A NKWD+ ++ + +A P++ IS Sbjct: 296 RILTMVENAGRAMVIAYNKWDLTDEERRRYLEREIERDVQAYSWAPRV------NISALN 349 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G +D L ++ + W+ RI+T LN++L + +P P + R+ + TQ + P Sbjct: 350 GRNVDKLEKAIETAAEGWEMRISTGKLNAFLGRLAAAHPHPVRGGKQPRILFGTQAHNCP 409 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 P+F +F + + Y R++I RLR +F +G P+ + Sbjct: 410 PTFALFTS--GVFDQGYVRFIIRRLREDFGFAGSPVHV 445 >gi|293400643|ref|ZP_06644788.1| ribosome-associated GTPase EngA [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305669|gb|EFE46913.1| ribosome-associated GTPase EngA [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 438 Score = 231 bits (588), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 132/455 (29%), Positives = 225/455 (49%), Gaps = 30/455 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST+FNR++ ++ ++V + PG+TRDR+YG+A F ++DT GI Sbjct: 8 VAIVGRPNVGKSTIFNRIIGERKSIVEDTPGVTRDRIYGKAEWLTKEFRVIDTGGIQLA- 66 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +++N Q E+AI+EA ILF+++ K GIT D I L++ +I+ NK+D Sbjct: 67 DQPFREEINMQVEIAIDEADTILFVVNGKEGITNDDEYIARLLQRSQKKVILAVNKVDDF 126 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + YE Y+L + + +S H +G ++ I F K Sbjct: 127 AQSDSIYEFYNLGLSDPIAVSGAHGIGIGDILDAIVNSFPDKIQ---------------- 170 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 K+ R V+GRPNVGKS+L+N LL R++ + G TRD++ Sbjct: 171 -------------KDYDGMTRFCVIGRPNVGKSSLVNALLNQERVIVSNIEGTTRDAIDT 217 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + + DTAG+RK ++ E++E+ +V ++M ++ + +V++D QD Sbjct: 218 PFKREGKEYVVIDTAGIRKRGKVYENIEKYSVLRAMSAIERSDVVLVVIDGESGIRDQDK 277 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 + G V++ NKWD V + + + + I +S + + Sbjct: 278 HVAGFAHEAGKGVIIVYNKWDAVEKDEKTMNRIEKEIRTQFQYLSYAPILFVSALKKQRI 337 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 ++ + +++ RI T+ LN L QL PPPT + ++ Y +Q+ +PP+ + Sbjct: 338 QTILPMIDDVHDASVLRIQTNVLNEVLMDAQLMTPPPTHKGKRLKIYYASQVAVAPPTIV 397 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 +F P + SYKR+L N LR F G +R+ Sbjct: 398 LFVNDPELLHFSYKRFLENSLREAFGFQGTTLRIL 432 >gi|322392688|ref|ZP_08066148.1| ribosome-associated GTPase EngA [Streptococcus peroris ATCC 700780] gi|321144680|gb|EFX40081.1| ribosome-associated GTPase EngA [Streptococcus peroris ATCC 700780] Length = 436 Score = 231 bits (588), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 139/466 (29%), Positives = 246/466 (52%), Gaps = 39/466 (8%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AIVG PNVGKSTLFNR+ +++++V + G+TRDR+Y F+++DT GI D Sbjct: 5 TVAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRSFSMIDTGGI-DD 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + +Q+ Q E+A+ EA +I+F++ K GIT D + L K + P+I+ NK+D Sbjct: 64 VDAPFMEQIKHQAEIAMEEADVIVFVVSGKEGITDADEYVARKLYKTHKPVILAVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + Y+ Y+L E + IS+ H +GT ++ I + Q++ EE Sbjct: 124 PEMRNEIYDFYALGLGEPLPISSVHGIGTGDVLDAIVENLPQEF-------------EEE 170 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 +P ++ +++GRPNVGKS+LIN +LG +R++ +G TRD++ Sbjct: 171 NP----------------DVIKFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAID 214 Query: 244 ISW-NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + + + DTAGMRK ++ E+ E+ +V ++M+++ + +++L+A + Sbjct: 215 THFTDADGQEFTMIDTAGMRKSGKVYENTEKYSVMRAMRAIDRSDVVLMVLNAEEGIREY 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQ----DLRTKAIKNLPQIGDIYINTISG 358 D RI G +++ +NKWD + + ++ D+R + + LP I+++ + Sbjct: 275 DKRIAGFAHEAGKGMIIVVNKWDTLEKDNHTMKNWEDDIREQ-FQYLPYAPIIFVSAL-- 331 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 T + L L + +I++ TRI ++ LN + NP PT + ++ Y TQ+ + Sbjct: 332 -TKQRLHKLPEMIKQISESQNTRIPSAVLNDVIMDAIAINPTPTDKGKRLKIFYATQVAT 390 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 PP+F+IF + SY R+L N++R F G PI + + K Sbjct: 391 KPPTFVIFVNEEELMHFSYLRFLENQIRKAFVFEGTPIHLIARKRK 436 >gi|187734830|ref|YP_001876942.1| small GTP-binding protein [Akkermansia muciniphila ATCC BAA-835] gi|238691864|sp|B2UMV5|DER_AKKM8 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|187424882|gb|ACD04161.1| small GTP-binding protein [Akkermansia muciniphila ATCC BAA-835] Length = 464 Score = 231 bits (588), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 142/464 (30%), Positives = 233/464 (50%), Gaps = 27/464 (5%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAIVG PNVGKS +FNR+ +++A+V + PG+TRDRL I I+DT GI Sbjct: 6 TIAIVGRPNVGKSAIFNRMAGRRIAIVHDEPGVTRDRLSAPCKITDRACKIMDTGGIGAR 65 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + A+Q+ + ++AI A LILF++D + +TP D +I LRK +IP+I++ NK D Sbjct: 66 LSDGFAEQVEAEADIAIKTADLILFVLDCRDHLTPIDQSIADHLRKSDIPVILLLNKADH 125 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 N E L F + + +SA H G SEL S + KQK Sbjct: 126 EKQDLNLGEFAGLGFDDHIFLSAAHGRGFSELASRLDGFLKQK----------------G 169 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 +P + E + + + P+++AVVGRPN GKS+L+N +L R + + +G TRD++ Sbjct: 170 APLKEELEEEPENGEETALPIKVAVVGRPNAGKSSLVNAILRDRRTIVSNVAGTTRDAID 229 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + + P + DTAGMR SR S+E + +S +++R + ++++D +QD Sbjct: 230 VPYLHDGQPYVLIDTAGMRPRSRRDTSVEVFSAMRSEKAIRRADICLLVIDIAAGITQQD 289 Query: 304 LRIVDSVFNTGHAVVLALNKWDMV---SDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 RI + G ++ +NK+D+ + + + + ++ + + L I S + Sbjct: 290 RRIAGIIAEEGKPCIIIVNKFDLFHPNASRKDRMAEVEEQVRRELFFISYAPFIATSAKK 349 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLK-YITQIQSS 419 EG++ + + I + TT LN +Q Q NPP RLK Y Sbjct: 350 AEGVEIIFKVITRIRRESHNLPTTGQLNRLIQLAQQMNPPGAASGSARRLKIYYATTAVD 409 Query: 420 P-------PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 P P +++F + + +SY +YL N++R + GIP+ Sbjct: 410 PKYNTIPVPRYVLFVNDKSLLTDSYSQYLRNKIREAYPAPGIPV 453 >gi|15901543|ref|NP_346147.1| GTP-binding protein EngA [Streptococcus pneumoniae TIGR4] gi|15903596|ref|NP_359146.1| GTP-binding protein EngA [Streptococcus pneumoniae R6] gi|111657418|ref|ZP_01408170.1| hypothetical protein SpneT_02001366 [Streptococcus pneumoniae TIGR4] gi|116515879|ref|YP_816974.1| GTP-binding protein EngA [Streptococcus pneumoniae D39] gi|148989364|ref|ZP_01820732.1| phosphoglycerate dehydrogenase-related protein [Streptococcus pneumoniae SP6-BS73] gi|148997762|ref|ZP_01825326.1| phosphoglycerate dehydrogenase-related protein [Streptococcus pneumoniae SP11-BS70] gi|149011426|ref|ZP_01832673.1| phosphoglycerate dehydrogenase-related protein [Streptococcus pneumoniae SP19-BS75] gi|149020788|ref|ZP_01835317.1| phosphoglycerate dehydrogenase-related protein [Streptococcus pneumoniae SP23-BS72] gi|168487543|ref|ZP_02712051.1| GTP-binding protein EngA [Streptococcus pneumoniae CDC1087-00] gi|168491409|ref|ZP_02715552.1| GTP-binding protein EngA [Streptococcus pneumoniae CDC0288-04] gi|168493616|ref|ZP_02717759.1| GTP-binding protein EngA [Streptococcus pneumoniae CDC3059-06] gi|168575101|ref|ZP_02721064.1| GTP-binding protein EngA [Streptococcus pneumoniae MLV-016] gi|169832823|ref|YP_001695085.1| GTP-binding protein EngA [Streptococcus pneumoniae Hungary19A-6] gi|182684651|ref|YP_001836398.1| GTP-binding protein EngA [Streptococcus pneumoniae CGSP14] gi|194398265|ref|YP_002038320.1| GTP-binding protein EngA [Streptococcus pneumoniae G54] gi|221232445|ref|YP_002511598.1| GTP-binding protein EngA [Streptococcus pneumoniae ATCC 700669] gi|225855139|ref|YP_002736651.1| GTP-binding protein EngA [Streptococcus pneumoniae JJA] gi|225857322|ref|YP_002738833.1| GTP-binding protein EngA [Streptococcus pneumoniae P1031] gi|225859462|ref|YP_002740972.1| GTP-binding protein EngA [Streptococcus pneumoniae 70585] gi|225861533|ref|YP_002743042.1| GTP-binding protein EngA [Streptococcus pneumoniae Taiwan19F-14] gi|237649250|ref|ZP_04523502.1| GTP-binding protein EngA [Streptococcus pneumoniae CCRI 1974] gi|237822010|ref|ZP_04597855.1| GTP-binding protein EngA [Streptococcus pneumoniae CCRI 1974M2] gi|289167434|ref|YP_003445703.1| phosphoglycerate dehydrogenase-related protein, GTP-binding protein [Streptococcus mitis B6] gi|298229308|ref|ZP_06962989.1| GTP-binding protein EngA [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255748|ref|ZP_06979334.1| GTP-binding protein EngA [Streptococcus pneumoniae str. Canada MDR_19A] gi|298503453|ref|YP_003725393.1| GTP-binding protein EngA [Streptococcus pneumoniae TCH8431/19A] gi|303254319|ref|ZP_07340427.1| GTP-binding protein EngA [Streptococcus pneumoniae BS455] gi|303258643|ref|ZP_07344623.1| GTP-binding protein EngA [Streptococcus pneumoniae SP-BS293] gi|303261806|ref|ZP_07347752.1| GTP-binding protein EngA [Streptococcus pneumoniae SP14-BS292] gi|303263670|ref|ZP_07349592.1| GTP-binding protein EngA [Streptococcus pneumoniae BS397] gi|303266846|ref|ZP_07352725.1| GTP-binding protein EngA [Streptococcus pneumoniae BS457] gi|303269910|ref|ZP_07355651.1| GTP-binding protein EngA [Streptococcus pneumoniae BS458] gi|307068334|ref|YP_003877300.1| putative GTPase [Streptococcus pneumoniae AP200] gi|307705427|ref|ZP_07642284.1| small GTP-binding domain protein [Streptococcus mitis SK597] gi|307707485|ref|ZP_07643967.1| GTP-binding protein EngA [Streptococcus mitis NCTC 12261] gi|307709642|ref|ZP_07646094.1| small GTP-binding domain protein [Streptococcus mitis SK564] gi|322377454|ref|ZP_08051945.1| ribosome-associated GTPase EngA [Streptococcus sp. M334] gi|54037053|sp|P64063|DER_STRR6 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|54040976|sp|P64062|DER_STRPN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|122278180|sp|Q04J64|DER_STRP2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|238688353|sp|B1I766|DER_STRPI RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|238690849|sp|B5E756|DER_STRP4 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|238691183|sp|B2IRW4|DER_STRPS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|254783168|sp|C1C8U6|DER_STRP7 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|254783169|sp|B8ZMH4|DER_STRPJ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|254783171|sp|C1CFT0|DER_STRZJ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|254783172|sp|C1CM45|DER_STRZP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|254783173|sp|C1CSX0|DER_STRZT RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|14973204|gb|AAK75787.1| phosphoglycerate dehydrogenase-related protein [Streptococcus pneumoniae TIGR4] gi|15459218|gb|AAL00357.1| Phosphoglycerate dehydrogenase [Streptococcus pneumoniae R6] gi|116076455|gb|ABJ54175.1| phosphoglycerate dehydrogenase-related protein [Streptococcus pneumoniae D39] gi|147756261|gb|EDK63303.1| phosphoglycerate dehydrogenase-related protein [Streptococcus pneumoniae SP11-BS70] gi|147764416|gb|EDK71347.1| phosphoglycerate dehydrogenase-related protein [Streptococcus pneumoniae SP19-BS75] gi|147925114|gb|EDK76194.1| phosphoglycerate dehydrogenase-related protein [Streptococcus pneumoniae SP6-BS73] gi|147930429|gb|EDK81412.1| phosphoglycerate dehydrogenase-related protein [Streptococcus pneumoniae SP23-BS72] gi|168995325|gb|ACA35937.1| GTP-binding protein EngA [Streptococcus pneumoniae Hungary19A-6] gi|182629985|gb|ACB90933.1| GTP-binding protein EngA [Streptococcus pneumoniae CGSP14] gi|183569654|gb|EDT90182.1| GTP-binding protein EngA [Streptococcus pneumoniae CDC1087-00] gi|183574158|gb|EDT94686.1| GTP-binding protein EngA [Streptococcus pneumoniae CDC0288-04] gi|183576280|gb|EDT96808.1| GTP-binding protein EngA [Streptococcus pneumoniae CDC3059-06] gi|183578800|gb|EDT99328.1| GTP-binding protein EngA [Streptococcus pneumoniae MLV-016] gi|194357932|gb|ACF56380.1| ribosome-associated GTPase EngA [Streptococcus pneumoniae G54] gi|220674906|emb|CAR69481.1| GTP-binding protein EngA [Streptococcus pneumoniae ATCC 700669] gi|225721482|gb|ACO17336.1| GTP-binding protein EngA [Streptococcus pneumoniae 70585] gi|225723540|gb|ACO19393.1| ribosome-associated GTPase EngA [Streptococcus pneumoniae JJA] gi|225724777|gb|ACO20629.1| ribosome-associated GTPase EngA [Streptococcus pneumoniae P1031] gi|225727275|gb|ACO23126.1| ribosome-associated GTPase EngA [Streptococcus pneumoniae Taiwan19F-14] gi|288907001|emb|CBJ21835.1| phosphoglycerate dehydrogenase-related protein, GTP-binding protein [Streptococcus mitis B6] gi|298239048|gb|ADI70179.1| GTP-binding protein EngA [Streptococcus pneumoniae TCH8431/19A] gi|301794686|emb|CBW37137.1| GTP-binding protein EngA [Streptococcus pneumoniae INV104] gi|301802409|emb|CBW35163.1| GTP-binding protein EngA [Streptococcus pneumoniae INV200] gi|302598670|gb|EFL65708.1| GTP-binding protein EngA [Streptococcus pneumoniae BS455] gi|302636889|gb|EFL67378.1| GTP-binding protein EngA [Streptococcus pneumoniae SP14-BS292] gi|302640144|gb|EFL70599.1| GTP-binding protein EngA [Streptococcus pneumoniae SP-BS293] gi|302640564|gb|EFL70970.1| GTP-binding protein EngA [Streptococcus pneumoniae BS458] gi|302643614|gb|EFL73882.1| GTP-binding protein EngA [Streptococcus pneumoniae BS457] gi|302646708|gb|EFL76933.1| GTP-binding protein EngA [Streptococcus pneumoniae BS397] gi|306409871|gb|ADM85298.1| Predicted GTPase [Streptococcus pneumoniae AP200] gi|307616437|gb|EFN95628.1| GTP-binding protein EngA [Streptococcus mitis NCTC 12261] gi|307619540|gb|EFN98664.1| small GTP-binding domain protein [Streptococcus mitis SK564] gi|307621026|gb|EFO00106.1| small GTP-binding domain protein [Streptococcus mitis SK597] gi|321281654|gb|EFX58663.1| ribosome-associated GTPase EngA [Streptococcus sp. M334] gi|327389894|gb|EGE88239.1| GTP-binding protein engA [Streptococcus pneumoniae GA04375] gi|332074047|gb|EGI84525.1| GTP-binding protein engA [Streptococcus pneumoniae GA41301] gi|332199734|gb|EGJ13809.1| GTP-binding protein engA [Streptococcus pneumoniae GA41317] gi|332200267|gb|EGJ14340.1| GTP-binding protein engA [Streptococcus pneumoniae GA47368] Length = 436 Score = 231 bits (588), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 142/466 (30%), Positives = 247/466 (53%), Gaps = 39/466 (8%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAIVG PNVGKSTLFNR+ +++++V + G+TRDR+Y F+++DT GI D Sbjct: 5 TIAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRSFSMIDTGGI-DD 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + +Q+ Q E+A+ EA +I+F++ K GIT D + L K + P+I+ NK+D Sbjct: 64 VDAPFMEQIKHQAEIAMEEADVIVFVVSGKEGITDADEYVARKLYKTHKPVILAVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + Y+ Y+L E + IS+ H +GT ++ I + N P N+ EE Sbjct: 124 PEMRNDIYDFYALGLGEPLPISSVHGIGTGDVLDAIVE-------NLP------NEYEEE 170 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 +P ++ +++GRPNVGKS+LIN +LG +R++ +G TRD++ Sbjct: 171 NP----------------DVIKFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAID 214 Query: 244 ISW-NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + + + DTAGMRK ++ E+ E+ +V ++M+++ + +++++A + Sbjct: 215 THFTDTDGQEFTMIDTAGMRKSGKVYENTEKYSVMRAMRAIDRSDVVLMVINAEEGIREY 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDK----LNLLQDLRTKAIKNLPQIGDIYINTISG 358 D RI G +++ +NKWD + N +D+R + + LP I+++ + Sbjct: 275 DKRIAGFAHEAGKGMIIVVNKWDTLEKDNHTMKNWEEDIREQ-FQYLPYAPIIFVSAL-- 331 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 T + L L + +I++ TRI ++ LN + NP PT + ++ Y TQ+ + Sbjct: 332 -TKQRLHKLPEMIKQISESQNTRIPSAVLNDVIMDAIAINPTPTDKGKRLKIFYATQVAT 390 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 PP+F+IF + SY R+L N++R F G PI + + K Sbjct: 391 KPPTFVIFVNEEELMHFSYLRFLENQIRKAFVFEGTPIHLIARKRK 436 >gi|229822882|ref|ZP_04448952.1| hypothetical protein GCWU000282_00172 [Catonella morbi ATCC 51271] gi|229787695|gb|EEP23809.1| hypothetical protein GCWU000282_00172 [Catonella morbi ATCC 51271] Length = 437 Score = 231 bits (588), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 142/463 (30%), Positives = 245/463 (52%), Gaps = 32/463 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+A+VG PNVGKST+FNRLV +++++V ++PG+TRDR+Y G F ++DT GI D Sbjct: 5 TVALVGRPNVGKSTIFNRLVGERLSIVEDYPGVTRDRIYATGKWLGREFRVIDTGGI-DM 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + + Q+ Q ++A+ EA +I+FL + G+T D AI L + N P+++ NK D Sbjct: 64 IDEPLMDQVRYQADIAMEEADVIVFLTSMQEGLTDADEAIAHRLHRTNKPVVLAVNKADN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 ++ Y+ Y+L + IS H G +L + F P ++ E Sbjct: 124 PEMRQMVYDFYALGHGDPYPISGSHGTGLGDLLDAVVSHF-------PTDL-------AE 169 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 + +E++ ++ +GRPNVGKS+L+N +L R++ + G TR++V Sbjct: 170 AEEEDV--------------IKFCFIGRPNVGKSSLVNAILKEERVIVSNIEGTTREAVD 215 Query: 244 ISW-NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + + + + DTAG+RK ++ E+ E+ +V ++M ++ + ++LDA +Q Sbjct: 216 THFTDEEGTRYTMIDTAGIRKRGKVYENTEKYSVLRAMSAIERSDIVCLVLDAETGIREQ 275 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIK-NLPQIGDIYINTISGRTG 361 D ++ + G +V+ +NKWD V DK + L + TK I+ + + I +S TG Sbjct: 276 DKKVAGYAYEAGKGMVILVNKWDAV-DKSDKLFETFTKEIRAHFQYLTFAPILFVSAHTG 334 Query: 362 EGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 + L+ L + I RI +S LN L NP PT R ++ Y+TQ+ +PP Sbjct: 335 QRLNKLPELLKTIYDNRHRRIQSSVLNDVLMDAVAMNPTPTDKGRRLKIYYLTQVAVNPP 394 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 +F+ F + SY+R+L N+LR +F G PI++ ++ + Sbjct: 395 TFVAFVNDVELMHFSYERFLENQLRQSFYFEGTPIKLITRARQ 437 >gi|300814694|ref|ZP_07094944.1| ribosome-associated GTPase EngA [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511167|gb|EFK38417.1| ribosome-associated GTPase EngA [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 439 Score = 231 bits (588), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 132/452 (29%), Positives = 230/452 (50%), Gaps = 29/452 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 ++I+G PNVGKSTLFN+++ KK+++ + PG+TRDR+Y A F +VDT G+ Sbjct: 6 VSIIGKPNVGKSTLFNKILGKKISITEDTPGVTRDRIYQTASWLDYSFLLVDTGGLDLKD 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + Q ++A+ + +I+FL D G++P D I ++LRK N +I+ NK D + Sbjct: 66 EDIFMSSIKAQVDIAVETSQVIIFLTDGIEGVSPTDREIANYLRKSNKKVILAVNKCDAK 125 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + N Y+ + L E +S+E G +L + K + ++ + I Sbjct: 126 KTKENIYDFFELGLGEPYLVSSEQGTGLGDLLDEVTKSIDKYVADNEDDFI--------- 176 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 R++++G+PNVGKS+L N L R + + +G TRD++ Sbjct: 177 --------------------RVSIIGKPNVGKSSLFNYLSKEERSIVTNIAGTTRDAIDT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 ++K++ DTAG+RK +I ES+E+ +V +++ ++ ++L+DAT +QD Sbjct: 217 KISYKDNEYIFVDTAGLRKRKKIKESVERYSVIRTLTAIERSSVCLLLVDATEGISEQDS 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 +I + A+++ +NKWD + +++ + LP + I IS G + Sbjct: 277 KIAGFAHDNNKAMIICVNKWDAIEKDTYTMKNFEADVRRELPFLSYAPIIFISAMKGTRV 336 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 ++L+ + ++ + RI T LN L ++ L N PP+ R +L Y +Q+ PP FL Sbjct: 337 EELLGLIELVDNNYNHRIQTGVLNDILNRSVLNNQPPSDKGRRGKLYYGSQVSVRPPRFL 396 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 + SY RYL N++R FS +G PI Sbjct: 397 LSVNDSKLFHFSYMRYLENQIREAFSFTGTPI 428 >gi|307707079|ref|ZP_07643876.1| small GTP-binding domain protein [Streptococcus mitis SK321] gi|307617605|gb|EFN96775.1| small GTP-binding domain protein [Streptococcus mitis SK321] Length = 436 Score = 231 bits (588), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 141/466 (30%), Positives = 248/466 (53%), Gaps = 39/466 (8%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAIVG PNVGKSTLFNR+ +++++V + G+TRDR+Y F+++DT GI D Sbjct: 5 TIAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRSFSMIDTGGI-DD 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + +Q+ Q E+A+ EA +I+F++ K GIT D + L K + P+I+ NK+D Sbjct: 64 VDAPFMEQIKHQAEIAMEEADVIVFVVSGKEGITDADEYVARKLYKTHKPVILAVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + Y+ Y+L E + IS+ H +GT ++ I + N P N+ EE Sbjct: 124 PEMRNDIYDFYALGLGEPLPISSVHGIGTGDVLDAIVE-------NLP------NEYEEE 170 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 +P ++ +++GRPNVGKS+LIN +LG +R++ +G TRD++ Sbjct: 171 NP----------------DVIKFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAID 214 Query: 244 ISW-NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + + + DTAGMRK ++ E+ E+ +V ++M+++ + +++++A + Sbjct: 215 THFTDTDGQEFTMIDTAGMRKSGKVYENTEKYSVMRAMRAIDRSDVVLMVINAEEGIREY 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLL----QDLRTKAIKNLPQIGDIYINTISG 358 D RI G +++ +NKWD + + + +D+R + + LP I+++ + Sbjct: 275 DKRIAGFAHEAGKGMIIVVNKWDTLEKDNHTMKSWEEDIREQ-FQYLPYAPIIFVSAL-- 331 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 T + L L + +I++ TRI ++ LN + NP PT + ++ Y TQ+ + Sbjct: 332 -TKQRLHKLPEMIKQISESQNTRIPSAVLNDVIMDAIAINPTPTDKGKRLKIFYATQVAT 390 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 PP+F+IF + SY R+L N++R F G PI + + K Sbjct: 391 KPPTFVIFVNEEELMHFSYLRFLENQIRKAFVFEGTPIHLIARKRK 436 >gi|148994026|ref|ZP_01823382.1| phosphoglycerate dehydrogenase-related protein [Streptococcus pneumoniae SP9-BS68] gi|168484900|ref|ZP_02709845.1| GTP-binding protein EngA [Streptococcus pneumoniae CDC1873-00] gi|168488574|ref|ZP_02712773.1| GTP-binding protein EngA [Streptococcus pneumoniae SP195] gi|307127923|ref|YP_003879954.1| GTP-binding protein EngA [Streptococcus pneumoniae 670-6B] gi|147927493|gb|EDK78521.1| phosphoglycerate dehydrogenase-related protein [Streptococcus pneumoniae SP9-BS68] gi|172041949|gb|EDT49995.1| GTP-binding protein EngA [Streptococcus pneumoniae CDC1873-00] gi|183572668|gb|EDT93196.1| GTP-binding protein EngA [Streptococcus pneumoniae SP195] gi|306484985|gb|ADM91854.1| GTP-binding protein EngA [Streptococcus pneumoniae 670-6B] gi|332072538|gb|EGI83021.1| GTP-binding protein engA [Streptococcus pneumoniae GA17570] gi|332072881|gb|EGI83362.1| GTP-binding protein engA [Streptococcus pneumoniae GA17545] Length = 436 Score = 230 bits (587), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 142/466 (30%), Positives = 247/466 (53%), Gaps = 39/466 (8%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAIVG PNVGKSTLFNR+ +++++V + G+TRDR+Y F+++DT GI D Sbjct: 5 TIAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRSFSMIDTGGI-DD 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + +Q+ Q E+A+ EA +I+F++ K GIT D + L K + P+I+ NK+D Sbjct: 64 VDAPFMEQIKHQAEIAMEEADVIVFVVSGKEGITDADEYVARKLYKTHKPVILAVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + Y+ Y+L E + IS+ H +GT ++ I + N P N+ EE Sbjct: 124 PEMRNDIYDFYALGLGEPLPISSVHGIGTGDVLDAIVE-------NLP------NEYEEE 170 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 +P ++ +++GRPNVGKS+LIN +LG +R++ +G TRD++ Sbjct: 171 NP----------------DVIKFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAID 214 Query: 244 ISW-NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + + + DTAGMRK ++ E+ E+ +V ++M+++ + +++++A + Sbjct: 215 THFTDTDGQEFTMIDTAGMRKSGKVYENTEKYSVMRAMRAIDRSDVVLMVINAEEGIREY 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDK----LNLLQDLRTKAIKNLPQIGDIYINTISG 358 D RI G +++ +NKWD + N +D+R + + LP I+++ + Sbjct: 275 DKRIAGFAHEAGKGMIIVVNKWDTLEKDNHTMKNWEEDIREQ-FQYLPYAPIIFVSAL-- 331 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 T + L L + +I++ TRI ++ LN + NP PT + ++ Y TQ+ + Sbjct: 332 -TKQRLHKLPGMIKQISESQNTRIPSAVLNDVIMDAIAINPTPTDKGKRLKIFYATQVAT 390 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 PP+F+IF + SY R+L N++R F G PI + + K Sbjct: 391 KPPTFVIFVNEEELMHFSYLRFLENQIRKAFVFEGTPIHLIARKRK 436 >gi|318061403|ref|ZP_07980124.1| GTP-binding protein Der [Streptomyces sp. SA3_actG] gi|318078001|ref|ZP_07985333.1| GTP-binding protein Der [Streptomyces sp. SA3_actF] Length = 488 Score = 230 bits (587), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 145/476 (30%), Positives = 238/476 (50%), Gaps = 49/476 (10%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD-- 62 +A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ +A G F +VDT G Sbjct: 52 LAVVGRPNVGKSTLVNRIIGRREAVVEDRPGVTRDRVTYEAEWAGRRFKLVDTGGWEQDV 111 Query: 63 -GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 G + S+A Q E AI + ++F++D+ G T D A+ LRK P+++ +NK+ Sbjct: 112 LGIDASVAA----QAEYAIEASDAVVFVVDATVGATDTDEAVVRLLRKAGKPVVLCANKV 167 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D + + ++SL E +SA H GT ++ + + Sbjct: 168 DGPSGEADAATLWSLGLGEPHPVSALHGRGTGDMLDAVLEALP----------------- 210 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 ++PKE G I P R+A++GRPNVGKS+L+N+L G +R++ Q+G TRD Sbjct: 211 -DAPKETFGGTG------IGGPRRVALIGRPNVGKSSLLNKLAGEDRVVVNEQAGTTRDP 263 Query: 242 V-------SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLD 294 V ++W + DTAG+RK + + + ++ +V E +VL+D Sbjct: 264 VDELIELGGVTWKF-------VDTAGIRKRVHLQQGADYYASLRTAAAVEKAEVAVVLID 316 Query: 295 ATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYIN 354 QD RI+ + G A+VLA NKWD + ++ L + + L Q+ Sbjct: 317 GADSISVQDQRILTMAVDAGRALVLAYNKWDTLDEERRYY--LEREIERELGQVAWAPRV 374 Query: 355 TISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYIT 414 IS RTG ++ L+ ++ W+TR+ T LN++L + +P P + R+ + T Sbjct: 375 NISARTGRHMEKLVPALETALAGWETRVPTGRLNAFLGELVAAHPHPVRGGKQPRILFGT 434 Query: 415 QIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 Q + PP F++F + I Y+R++ RLR F G P+++ + + KK Sbjct: 435 QAGTKPPRFVLFAS--GFIEAGYRRFIERRLREEFGFEGTPVQISVRVREKRGRKK 488 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 82/172 (47%), Gaps = 13/172 (7%) Query: 203 PL-RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGM 261 PL R+AVVGRPNVGKSTL+NR++G + + G+TRD V+ W ++ DT G Sbjct: 48 PLPRLAVVGRPNVGKSTLVNRIIGRREAVVEDRPGVTRDRVTYEAEWAGRRFKLVDTGGW 107 Query: 262 RKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLAL 321 + ++ ++ ++ + + ++DAT+ D +V + G VVL Sbjct: 108 EQD---VLGIDASVAAQAEYAIEASDAVVFVVDATVGATDTDEAVVRLLRKAGKPVVLCA 164 Query: 322 NKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 NK D S + + L +G + +S G G D++ +VLE Sbjct: 165 NKVDGPSGEAD---------AATLWSLGLGEPHPVSALHGRGTGDMLDAVLE 207 >gi|148238904|ref|YP_001224291.1| GTP-binding protein EngA [Synechococcus sp. WH 7803] gi|166225928|sp|A5GJ79|DER_SYNPW RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|147847443|emb|CAK22994.1| GTP-binding protein engA [Synechococcus sp. WH 7803] Length = 455 Score = 230 bits (587), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 135/463 (29%), Positives = 226/463 (48%), Gaps = 30/463 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKSTL NRL + A+V + PG+TRDR Y F +VDT G+ Sbjct: 6 VAIIGRPNVGKSTLVNRLCHSREAIVHDEPGVTRDRTYQDGYWGDRDFKVVDTGGLVFDD 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 + ++ +Q LA+ EA + L ++D + G+T D AI FLR + P ++ NK ++ Sbjct: 66 DSEFLPEIREQAALALEEASVALVIVDGQQGVTASDEAIAEFLRGQRCPALLAVNKCESP 125 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 E +SL E ISA H GT+EL + K Sbjct: 126 EQGLAMAAEFWSLGLGEPYPISAIHGAGTAELLDQVLTYLPPK----------------- 168 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 + EG S +P+++A++GRPNVGKS+L+N + G R + G TRD++ Sbjct: 169 ------SEEGDS-----EEPIQLAIIGRPNVGKSSLLNAICGEQRAIVSPIRGTTRDTID 217 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 S +N P + DTAG+R+ + E + +S +++ + ++++DA +QD Sbjct: 218 TSLVRENRPWRLVDTAGIRRRRSVNYGPEFFGINRSFKAIERSDVCVLVIDALDGVTEQD 277 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 R+ + G A V+ +NKWD V + + + + L + + S TG+ Sbjct: 278 QRLAGRIEEDGRACVVVVNKWDAVEKDSHTMTAMEKELRAKLYFLDWAPMLFTSALTGQR 337 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKT-QLQNPPPTIFNRYNRLKYITQIQSSPPS 422 +D + + + R++TS +N L++ ++PP T R RL Y TQ+ S PPS Sbjct: 338 VDSIFALAALAVEQHRRRVSTSVVNEVLKEALSWRSPPTTRGGRQGRLYYGTQVASRPPS 397 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 F +F P ++Y+RY+ ++R G P+++ ++ + Sbjct: 398 FTLFVNDPKLFGDTYRRYVERQIREGLGFDGTPLKLFWRGKQQ 440 >gi|269214116|ref|ZP_05983629.2| ribosome-associated GTPase EngA [Neisseria cinerea ATCC 14685] gi|269144512|gb|EEZ70930.1| ribosome-associated GTPase EngA [Neisseria cinerea ATCC 14685] Length = 537 Score = 230 bits (587), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 147/472 (31%), Positives = 226/472 (47%), Gaps = 40/472 (8%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M TIA+VG PNVGKSTLFNRL + K A+V + PG+TRDR YG + + ++DT G Sbjct: 53 MKPTIALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGHGKVGSKPYLVIDTGGF 112 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + I +M QT A++EA ++FL+D + G+TP D I LR+ P+ + NK Sbjct: 113 EPVVDSGILHEMAKQTLQAVDEADAVVFLVDGRTGLTPQDKIIADRLRQSPRPVYLAVNK 172 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKY-----PNHPLEMI 175 + E Y L + IS H G L I + F + HP+ Sbjct: 173 GEGGNRAVLAAEFYELALGDPYVISGAHGDGVYYLIEDILEKFPEPEKEEEEAKHPV--- 229 Query: 176 ENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQS 235 AV+GRPNVGKSTL+N +LG R++ + Sbjct: 230 ------------------------------FAVIGRPNVGKSTLVNAILGEERVIAFDMA 259 Query: 236 GITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDA 295 G TRDS+ I + + P I DTAG+R+ ++ E++E+ +V K+MQ+V +++LDA Sbjct: 260 GTTRDSIHIDFEREGKPFTIIDTAGVRRRGKVDEAVEKFSVIKAMQAVEAANVAVLVLDA 319 Query: 296 TIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINT 355 QD I G A+V+A+NKWD +S++ + ++ + L + + Sbjct: 320 QQDVADQDATIAGFALEAGRALVVAVNKWDGISEERR--EQVKRDINRKLYFLDFAKFHF 377 Query: 356 ISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQ 415 IS G+D L S+ ++ T + LQ + PP +++Y Q Sbjct: 378 ISALKERGIDGLFESIQAAYNAAMIKMPTPKITRVLQSAIERQQPPRAGLVRPKMRYAHQ 437 Query: 416 IQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 +PP ++ + I +SY RYL R F+L G P+R+ + S+NPY Sbjct: 438 GGMNPPVIVVHGNSLHAISDSYTRYLTQTFRKAFNLQGTPLRIQYNVSENPY 489 >gi|86608739|ref|YP_477501.1| GTP-binding protein EngA [Synechococcus sp. JA-2-3B'a(2-13)] gi|123502588|sp|Q2JM09|DER_SYNJB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|86557281|gb|ABD02238.1| GTP-binding protein EngA [Synechococcus sp. JA-2-3B'a(2-13)] Length = 459 Score = 230 bits (587), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 134/469 (28%), Positives = 236/469 (50%), Gaps = 30/469 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL NR+ + A+V + PG+TRDRLY + NG +VDT G+ G Sbjct: 6 VAIVGRPNVGKSTLVNRMAGVRSAIVHDEPGVTRDRLYQEVEWNGRRLRVVDTGGLVFGD 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 + + Q A+ EA ++F++D + G+TP D + +LRK+ +P+++ NK ++ Sbjct: 66 DSEFLPHIRQQAMAAMAEAQAVIFVVDGREGLTPADVEVADWLRKQPLPVVVAVNKCESG 125 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 ++ + L + + S H G +EL + + Sbjct: 126 QMGLAQAAAFWELGLGDPIPCSGIHGNGVAELLEAVLAHLPE------------------ 167 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 +T+E P+ +++VGRPNVGKS+L+NRL+G R + SG TRD++ Sbjct: 168 -----VTAEAAGE----PDPIAVSIVGRPNVGKSSLLNRLVGSERAIVSPISGTTRDAID 218 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 W+ P + DTAG+RK +R+ +E ++ ++ ++++ + ++++DA +QD Sbjct: 219 TVVTWEGQPYRLIDTAGIRKKNRVQYGIEFFSINRAFKAIQRSDAVLLVIDALEGVTEQD 278 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKN-LPQIGDIYINTISGRTGE 362 R+ + G A V+ +NKWD V +K + T+ I++ L I + +S TG+ Sbjct: 279 QRLAGRIEEEGRACVVVVNKWDAVENKDTHTINEFTREIRDRLYFIEWAPLLFVSALTGQ 338 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKT-QLQNPPPTIFNRYNRLKYITQIQSSPP 421 + V + + R+ T+ +N LQ Q+PP + R+ Y TQ+ PP Sbjct: 339 RTHKIFEQVNTVVAAHRKRVPTAVVNEVLQDALAWQSPPTNRQGKQGRIYYGTQVADRPP 398 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +F++F P+ ++Y+R+L R N +G PIR ++ + + Sbjct: 399 TFVLFVNDPDLFKDNYRRFLEKHFRQNLDFTGTPIRFLWRGKSERLVGR 447 >gi|139439670|ref|ZP_01773083.1| Hypothetical protein COLAER_02111 [Collinsella aerofaciens ATCC 25986] gi|133775011|gb|EBA38831.1| Hypothetical protein COLAER_02111 [Collinsella aerofaciens ATCC 25986] Length = 444 Score = 230 bits (587), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 146/464 (31%), Positives = 248/464 (53%), Gaps = 38/464 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTL NRL + A+V G+TRDR Y A NG F IVDT GI K Sbjct: 5 VAVVGRPNVGKSTLVNRLAQTSDAIVHESRGVTRDRSYHTADWNGREFTIVDTGGIEPLK 64 Query: 65 NCSI-AKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + + A + DQ A EA +ILF++D + G+T D ++ L++ + P+ ++ NK+D Sbjct: 65 SDDVFATSIRDQALAAAEEAAVILFVVDGRTGVTEEDESVARMLKRCDKPVFLLVNKLDN 124 Query: 124 RIAQRN-FYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 + + +E YSL E +SA H GT +L I + + E ++ + Sbjct: 125 PDRENDSIWEFYSLGIGEPTPLSALHGHGTGDLLDDIVALLPE----------EEDEVAD 174 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 E P L +A++GRPN GKS+L NR+LG +R + + +G TRD++ Sbjct: 175 EFPD----------------ALNVAIIGRPNAGKSSLFNRILGADRSIVSNIAGTTRDAI 218 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + DTAG+RK S + E++E ++ + ++++ + ++++DA++ +Q Sbjct: 219 DTVVERNGKHYRMVDTAGIRKKSTVYENIEYYSMVRGLRAIDRADVALLVVDASVGVTEQ 278 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSD---KLNLLQDLRTKAIKNLPQIGDIYINTISGR 359 D +++ G A+V+ LNKWD++ D + ++ + + P + I+ ++GR Sbjct: 279 DQKVMGLAIERGCAIVVLLNKWDLLDDDRKREACMETIDRRLGVMAPWAQYLRISALTGR 338 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFN--RYNRLKYITQIQ 417 + E + MV E K +I+TS LN++L T L+ T+ + R R+ Y+TQ Sbjct: 339 SVEKI-WAMVDAAE--KTRSQKISTSRLNTFL--TDLREFGHTVVDGKRRLRMHYVTQTG 393 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 +PP+F F + + ++Y+RY+ NR+R F +G PIR+ F+ Sbjct: 394 VNPPTFTFFVNHSDLVNDTYQRYVENRMRSTFDFAGTPIRLFFR 437 >gi|29833066|ref|NP_827700.1| GTP-binding protein EngA [Streptomyces avermitilis MA-4680] gi|37999529|sp|Q828Y7|DER_STRAW RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|29610188|dbj|BAC74235.1| putative GTP-binding protein [Streptomyces avermitilis MA-4680] Length = 491 Score = 230 bits (587), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 143/469 (30%), Positives = 240/469 (51%), Gaps = 54/469 (11%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD-- 62 +A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ +A G F +VDT G Sbjct: 55 LAVVGRPNVGKSTLVNRIIGRREAVVEDKPGVTRDRVTYEAEWAGRRFKLVDTGGWEQDV 114 Query: 63 -GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 G + S+A Q E AI A ++F++D+K G T D A+ LRK P+++ +NK+ Sbjct: 115 LGIDASVAA----QAEYAIEAADAVVFVVDAKVGATDTDEAVVRLLRKAGKPVVLCANKV 170 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D + + + +++L E +SA H GT ++ + + Sbjct: 171 DGQSGEADASYLWALGLGEPHPVSALHGRGTGDMLDAVLEALP----------------- 213 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 E+P ++ + I P RIA++GRPNVGKS+L+N++ G +R++ +G TRD Sbjct: 214 -EAPAQSFGA-------AIGGPRRIALIGRPNVGKSSLLNKVAGEDRVVVNEIAGTTRDP 265 Query: 242 V-------SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLD 294 V ++W + DTAG+RK + + + ++ +V E ++L+D Sbjct: 266 VDELIELGGVTWKF-------VDTAGIRKRVHLQQGADYYASLRTAAAVEKAEVAVILID 318 Query: 295 ATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSD--KLNLLQDLRTKAIKNLPQIGDIY 352 A+ QD RIV + G A+VLA NKWD + + + L +++ T+ L Q+ Sbjct: 319 ASESISVQDQRIVTMAVDAGRAIVLAFNKWDTLDEERRYYLEREIETE----LLQVAWAP 374 Query: 353 INTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKY 412 +S RTG ++ L+ ++ W+TR+ T LN++L + +P P + R+ + Sbjct: 375 RVNVSARTGRHMEKLVPAIETALDGWETRVPTGRLNAFLGELVAAHPHPVRGGKQPRILF 434 Query: 413 ITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 TQ + PP F++F + I Y+R++ RLR F G PI + + Sbjct: 435 GTQAGTKPPRFVLFAS--GFIEHGYRRFIERRLREEFGFEGTPIHISVR 481 >gi|88809283|ref|ZP_01124792.1| GTP-binding protein EngA [Synechococcus sp. WH 7805] gi|88787225|gb|EAR18383.1| GTP-binding protein EngA [Synechococcus sp. WH 7805] Length = 455 Score = 230 bits (587), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 135/463 (29%), Positives = 227/463 (49%), Gaps = 30/463 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKSTL NRL + A+V + PG+TRDR Y + F +VDT G+ Sbjct: 6 VAIIGRPNVGKSTLVNRLCHSREAIVHDEPGVTRDRTYQDGYWSDREFKVVDTGGLVFDD 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 + ++ +Q LA+ EA + L ++D + G+T D AI FLR + P ++ NK ++ Sbjct: 66 DSEFLPEIREQAALALEEASVALVIVDGQQGVTASDEAIAEFLRGQRCPALLAVNKCESP 125 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 E +SL E ISA H GT+EL + K Sbjct: 126 EQGLAMAAEFWSLGLGEPYPISAIHGAGTAELLDQVLTYLPPK----------------- 168 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 + EG S +P+++A++GRPNVGKS+L+N + G R + G TRD++ Sbjct: 169 ------SQEGDS-----EEPIQLAIIGRPNVGKSSLLNAICGEQRAIVSPIRGTTRDTID 217 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 S +N P + DTAG+R+ ++ E + +S +++ + ++++DA +QD Sbjct: 218 TSLVRENRPWRLVDTAGIRRRRSVSYGPEFFGINRSFKAIERSDVCVLVIDALDGVTEQD 277 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 R+ + G A V+ +NKWD V + + + L + + S TG+ Sbjct: 278 QRLAGRIEEDGRACVVVVNKWDAVEKDSHTMPAMEKGLRAKLYFLDWAPMLFTSALTGQR 337 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKT-QLQNPPPTIFNRYNRLKYITQIQSSPPS 422 +D + + + R++TS +N L++ ++PP T R RL Y TQ+ S PPS Sbjct: 338 VDSIFALAALAVEQHRRRVSTSVVNEVLKEALSWRSPPTTRGGRQGRLYYGTQVASRPPS 397 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 F +F P ++Y+RY+ ++R G P+++ ++ + Sbjct: 398 FTLFVNDPKLFGDTYRRYVERQIREGLGFDGTPLKLFWRGKQQ 440 >gi|148273155|ref|YP_001222716.1| GTP-binding protein EngA [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147831085|emb|CAN02030.1| putative GTP-binding protein [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 502 Score = 230 bits (587), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 142/457 (31%), Positives = 233/457 (50%), Gaps = 41/457 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI---A 61 +A+VG PNVGKS L NR++ ++ AVV + PG+TRDR+ +A G F +VDT G A Sbjct: 70 LAVVGRPNVGKSALINRILGRREAVVEDTPGVTRDRVSYKAEHAGRWFTLVDTGGWEPDA 129 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 G N S+A Q E+A++ A +LF++D+ G T D + LRK +I+ +NK+ Sbjct: 130 KGINASVAM----QAEIAMDLADAVLFVVDANVGATSTDEHVVRLLRKTKKTVILAANKV 185 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D + N ++SL E +SA H G ++L ++ K PL Sbjct: 186 DDARQEPNAASLWSLGLGEPHPVSALHGRGVADLLDLVLKTL-------PL--------- 229 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 K + + + P R+A++GRPNVGKS+L+N+ G R++ +G TRD Sbjct: 230 ----------VSKVAKEEVGGPRRVAILGRPNVGKSSLLNKAAGEERVVVNELAGTTRDP 279 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 V DTAG+R+ + + + ++ ++ E +V++D + + Sbjct: 280 VDEQVEIAGKVWRFVDTAGIRRRMHLAQGADFYASLRTSAALEKAEVAVVMIDVSEVISE 339 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVSDKLN--LLQDLRTKAIKNLPQIGDIYINTISGR 359 QD+RI++ V +G A+VLA NKWD++ D+ L +++ T +L + IS R Sbjct: 340 QDIRIIELVLESGRALVLAFNKWDLLDDERRRYLEREIET----DLAHVSWAPRVNISAR 395 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 TG ++ L+ ++ + W TRI T N++L + +P P + R+ + TQ S Sbjct: 396 TGRHMEKLVPALETALESWDTRIATGKFNAFLAELTAAHPHPVRGGKQPRILFGTQASSR 455 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 PP+F++F T + Y+RY+ RLR + G PI Sbjct: 456 PPTFVLFTT--GYLDPQYRRYIQRRLREIYGFEGSPI 490 >gi|313890874|ref|ZP_07824498.1| ribosome biogenesis GTPase Der [Streptococcus pseudoporcinus SPIN 20026] gi|313120772|gb|EFR43887.1| ribosome biogenesis GTPase Der [Streptococcus pseudoporcinus SPIN 20026] Length = 436 Score = 230 bits (587), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 137/462 (29%), Positives = 242/462 (52%), Gaps = 31/462 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AIVG PNVGKSTLFNR+ +++++V + G+TRDR+Y F+++DT GI D Sbjct: 5 TVAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTTGEWLNRKFSLIDTGGI-DD 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + +Q+ Q ++A++EA +I+F++ K G+T D + L + + P+I+ NK+D Sbjct: 64 VDAPFMEQIKHQAQIAMDEADVIVFVVSGKEGVTDADEYVAKMLYRTHKPVILAINKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + Y+ YSL + +S+ H +GT ++ I + N P+E +E+N Sbjct: 124 PEMRNDIYDFYSLGLGDPYPLSSVHGIGTGDVLDAIVE-------NLPVEEVEDN----- 171 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 ENI +R +++GRPNVGKS+LIN +LG +R++ +G TRD++ Sbjct: 172 ---ENI--------------IRFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAID 214 Query: 244 ISW-NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 S+ + + DTAGMRK ++ E+ E+ +V ++M+++ + +++++A + Sbjct: 215 TSFTDSDGQEFTMIDTAGMRKSGKVYENTEKYSVMRAMRAIDRSDVVLMVINAEEGIREY 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D RI G +++ +NKWD +S + + + I +S T + Sbjct: 275 DKRIAGFAHEAGKGMIIVVNKWDTISKDNHTVSKWEEDIRDQFQFLSYAPIIFVSALTKQ 334 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 L+ L + I+ RI ++ LN + NP PT + ++ Y TQ+ PP+ Sbjct: 335 RLNKLPELIKRISDSQSRRIPSAVLNDVVMDAIAINPTPTDKGKRLKIFYATQVSVKPPT 394 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 F+IF + SY R+L N++R F+ G PI + + K Sbjct: 395 FVIFVNEEELMHFSYLRFLENQIRAAFTFEGTPIHLIARKRK 436 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 39/130 (30%), Positives = 66/130 (50%), Gaps = 13/130 (10%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAI-INGVIFNIVDTAGI 60 I +++G PNVGKS+L N ++ + + G TRD + +G F ++DTAG+ Sbjct: 174 IIRFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTSFTDSDGQEFTMIDTAGM 233 Query: 61 -------ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIP 113 + + S+ + M AI+ + ++L +I+++ GI YD I F + Sbjct: 234 RKSGKVYENTEKYSVMRAMR-----AIDRSDVVLMVINAEEGIREYDKRIAGFAHEAGKG 288 Query: 114 IIIVSNKMDT 123 +IIV NK DT Sbjct: 289 MIIVVNKWDT 298 >gi|55981360|ref|YP_144657.1| GTP-binding protein EngA [Thermus thermophilus HB8] gi|55772773|dbj|BAD71214.1| GTP-binding protein [Thermus thermophilus HB8] Length = 431 Score = 230 bits (587), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 135/469 (28%), Positives = 249/469 (53%), Gaps = 44/469 (9%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 ++ + IVG PNVGKS+LFNRL+KK+ AVV + PG+TRD G + F +VDT G+ Sbjct: 1 MHKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLW 60 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 G K++ ++ + A+ +A ++LF +D +A +T D+ + +LR+K P+I+V+ K+ Sbjct: 61 SGDKWE--KKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKV 118 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D + +Y L F + + S+EH G EL I+ Sbjct: 119 DDPKHELYLGPLYGLGFGDPIPTSSEHARGLEELLEAIW--------------------- 157 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 E P I +E + + +R+A+VGRPN GKS+L+N +LG R++ + G TRD+ Sbjct: 158 ERLPVRQIETEPEVA------GIRLAIVGRPNAGKSSLLNAILGEERVIVSEEPGTTRDA 211 Query: 242 VSISWNWKNHPIEIFDTAGMRK-PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 + + + + + DTAG+RK P + E L +++S++++ + ++++D PF+ Sbjct: 212 IDVEFFFGGQRFVLVDTAGIRKRPENLVEEL---AIRRSLRAMDEADVVLLVVD---PFQ 265 Query: 301 KQD--LRIVDSVFNTGHAVVLALNKWDMV--SDKLNLLQDLRTKAIKNLPQIGDIYINTI 356 D L++ + + G V+L + KWD+V D + + LR K + +L + ++ + + Sbjct: 266 VGDRELKLANEALDRGKPVLLVITKWDLVDKEDAPKMRRLLREK-LAHLDHLPRVFTSAL 324 Query: 357 SGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQI 416 T + LD + + +++L +TR+ T+ LN W+ + P + ++ Y TQ Sbjct: 325 ---TRQNLDRIFREAVRLHELNQTRVPTAELNRWVAVWTSRVQMPNFKGKPLKILYATQP 381 Query: 417 QSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 + +PP+F+ F P + +++ YL NR+ + L +P R+ F+ + Sbjct: 382 EVAPPTFVFFVNHPEFVTRAFENYLKNRIGEDLGLREVPFRLVFRGRRE 430 >gi|21674598|ref|NP_662663.1| GTP-binding protein EngA [Chlorobium tepidum TLS] gi|26006711|sp|Q8KBK3|DER_CHLTE RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|21647797|gb|AAM73005.1| GTP-binding protein [Chlorobium tepidum TLS] Length = 437 Score = 230 bits (587), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 148/458 (32%), Positives = 233/458 (50%), Gaps = 30/458 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTLFNR++++K A+V PG+TRDR G F ++DT G A + Sbjct: 5 IALVGRPNVGKSTLFNRILRQKSAIVDPTPGVTRDRHISPGEWQGKQFLLMDTGGYAP-E 63 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRK--KNIPIIIVSNKMD 122 N +++K M +QT AI +A ++F++D+++G+T D I L+K K+ I V+NK+D Sbjct: 64 NDTLSKAMLEQTMRAIEDADAVIFIVDARSGLTYLDLDIAKILQKTFKDKKIFFVANKVD 123 Query: 123 TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 + F E ISA G ++ M+E+ + Sbjct: 124 NPQVALEAQSLVKSGFTEPYLISARDGAGVAD-------------------MLEDVLNSL 164 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 P+ E S +++AV+GRPNVGKS+L+N LLG R + G TRD++ Sbjct: 165 PCPEGEEIEEDDS--------IKLAVLGRPNVGKSSLVNALLGTERHIVSDVPGTTRDAI 216 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + DTAG+RK ++I +E + ++ +++ C+ +VLLDA + E Q Sbjct: 217 DSVLKRNGEEYVLIDTAGLRKRTKIDAGIEFYSSLRTARAIERCDVALVLLDARLGLESQ 276 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D++I+ V++ +NKWD+V + L IG I + S T + Sbjct: 277 DMKIIHMAIERKKGVLILVNKWDLVEKDSKTSKAFTDNLQNQLGNIGYIPVIFTSALTKK 336 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 + + EI + +I+TS LN +LQ+T P T + ++KY+TQI S P Sbjct: 337 NCYRAIDTAAEIALNRRQKISTSNLNRFLQETLTMRHPATKSGKELKIKYMTQIDSDHPV 396 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCF 460 F FC P + +++R+L RLR +F +GIPI M F Sbjct: 397 FAFFCNDPELLENNFRRFLEKRLRESFDFAGIPITMRF 434 >gi|319946441|ref|ZP_08020678.1| ribosome-associated GTPase EngA [Streptococcus australis ATCC 700641] gi|319747409|gb|EFV99665.1| ribosome-associated GTPase EngA [Streptococcus australis ATCC 700641] Length = 436 Score = 230 bits (587), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 137/462 (29%), Positives = 242/462 (52%), Gaps = 31/462 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AIVG PNVGKSTLFNR+ +++++V + G+TRDR+Y A F+I+DT GI D Sbjct: 5 TVAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATAEWLNHQFSIIDTGGI-DD 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + +Q+ Q E+A++EA +I+F++ K GIT D + L K + P+I+ NK+D Sbjct: 64 VDAPFMEQIKHQAEIAMDEADVIVFVVSGKEGITDADEYVARMLYKTHKPVILAVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + Y+ Y+L E + +S+ H +GT ++ I + N P + R E Sbjct: 124 PEMRTDIYDFYALGLGEPLPVSSVHGIGTGDVLDAIVE-------NLPTD------REPE 170 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 +P ++ +++GRPNVGKS+LIN +LG +R++ +G TRD++ Sbjct: 171 NP----------------DVIKFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAID 214 Query: 244 ISW-NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + + + + DTAGMRK ++ E+ E+ +V ++M+++ + +++L+A + Sbjct: 215 THFTDAEGQEYTMIDTAGMRKSGKVYENTEKYSVMRAMRAIDRSDVVLMVLNAEEGIREY 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D RI G +++ +NKWD + + ++ + I +S T + Sbjct: 275 DKRIAGFAHEAGKGMIIVVNKWDTLEKDNHTMKQWEDDIRDQFQYLSYAPIIFVSALTKQ 334 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 L L + +I++ TRI ++ LN + NP PT + ++ Y TQ+ + PP+ Sbjct: 335 RLHKLPDMIKQISESQNTRIPSAVLNDVIMDAIAINPTPTDKGKRLKIFYATQVATKPPT 394 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 F++F + SY R+L N++R F G PI + + K Sbjct: 395 FVVFVNEEELMHFSYLRFLENQIRKAFVFEGTPIHLIARKRK 436 >gi|24380270|ref|NP_722225.1| GTP-binding protein EngA [Streptococcus mutans UA159] gi|37999686|sp|Q8DS90|DER_STRMU RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|24378281|gb|AAN59531.1|AE015016_15 phosphoglycerate dehydrogenase [Streptococcus mutans UA159] Length = 436 Score = 230 bits (586), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 135/462 (29%), Positives = 240/462 (51%), Gaps = 31/462 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AIVG PNVGKS LFNR+ +++++V + G+TRDR+Y +A F+I+DT GI D Sbjct: 5 TVAIVGRPNVGKSALFNRIAGERISIVEDVEGVTRDRIYTKAEWLNRQFSIIDTGGI-DD 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + +Q+ Q ++A+ EA +I+F++ +K GIT D + L + + P+I+ NK+D Sbjct: 64 VDAPFMEQIKHQADIAMTEADVIVFVVSAKEGITDADEYVAKILYRTHKPVILAVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + Y+ Y+L + +S+ H +GT ++ I Sbjct: 124 PEMRSAIYDFYALGLGDPYPVSSAHGIGTGDVLDAIV----------------------- 160 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 +N+ +E + +I ++ +++GRPNVGKS+LIN +LG +R++ +G TRD++ Sbjct: 161 ---DNLPTEAQEESSDI---IKFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAID 214 Query: 244 ISW-NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 ++ + + + DTAGMRK ++ E+ E+ +V ++M+++ + +++L+A + Sbjct: 215 TTFTDEEGQEFTMIDTAGMRKSGKVYENTEKYSVMRAMRAIDRSDIVLMVLNAEEGIREY 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D RI G +V+ +NKWD + + N I I +S T + Sbjct: 275 DKRIAGFAHEAGKGIVVVVNKWDAIKKDNRTVAQWEADIRDNFQYIPYAPIVFVSAVTKQ 334 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 L L + ++++ TRI ++ LN + NP PT + ++ Y TQ+ PP+ Sbjct: 335 RLHKLPDVIKQVSQSQNTRIPSAVLNDVVMDAVAINPTPTDKGKRLKIFYATQVSVKPPT 394 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 F+IF + SY R+L N++R F G PIR+ + K Sbjct: 395 FVIFVNEEELMHFSYLRFLENQIRQAFVFEGTPIRLIARKRK 436 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 64/130 (49%), Gaps = 13/130 (10%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAII-NGVIFNIVDTAGI 60 I +++G PNVGKS+L N ++ + + G TRD + G F ++DTAG+ Sbjct: 174 IIKFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTTFTDEEGQEFTMIDTAGM 233 Query: 61 -------ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIP 113 + + S+ + M AI+ + ++L +++++ GI YD I F + Sbjct: 234 RKSGKVYENTEKYSVMRAMR-----AIDRSDIVLMVLNAEEGIREYDKRIAGFAHEAGKG 288 Query: 114 IIIVSNKMDT 123 I++V NK D Sbjct: 289 IVVVVNKWDA 298 >gi|119964121|ref|YP_947439.1| GTP-binding protein EngA [Arthrobacter aurescens TC1] gi|254783134|sp|A1R5C7|DER_ARTAT RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|119950980|gb|ABM09891.1| putative GTP-binding protein Era [Arthrobacter aurescens TC1] Length = 491 Score = 230 bits (586), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 149/462 (32%), Positives = 236/462 (51%), Gaps = 46/462 (9%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA-DG 63 +AI+G PNVGKSTL NR++ ++ AVV + PG+TRDR+ A NG F +VDT G D Sbjct: 56 LAIIGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVMYSARWNGRNFTLVDTGGWEHDA 115 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 K I ++ +Q E+A+ A +LF++DS G T D + LRK P+I+V+NK+D Sbjct: 116 KG--IHARVAEQAEMAVELADAVLFVVDSAVGATATDEGVMKMLRKSKKPVIMVANKVDD 173 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + ++ L F E +SA H G ++L +H ++ + Sbjct: 174 FAQEADSATLWGLGFGEPYPVSALHGRGVADLL------------DHVMDTL-------- 213 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 P+ ++ V+ P RIA++GRPNVGKS+L+N+L G R++ +G TRD V Sbjct: 214 -PEYSLV----DGVERSGGPRRIALIGRPNVGKSSLLNKLAGSERVVVDPLAGTTRDPVD 268 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + DTAG+R+ + + + ++ ++ E +VLL +QD Sbjct: 269 EFIELGDRTWRFVDTAGIRRRQHMAQGADFYASLRTQAALEKAEVAVVLLAVDEVLSEQD 328 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSD------KLNLLQDLRTKAIKNLPQIGDIYINTIS 357 +RI+ +G A+VLA NKWD++ D + + QDL ++ P++ IS Sbjct: 329 VRILQLAIESGRALVLAFNKWDLLDDERRRYLEREIEQDL--AHVEWAPRV------NIS 380 Query: 358 GRTGEGLDDLMVSVLEIN-KLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQI 416 +TG D L V L+I + W RI T LN++L + +P P + R+ + TQ Sbjct: 381 AKTGWHKDRL-VPALDIALESWDRRIPTGRLNAFLGELVAAHPHPVRGGKQPRILFGTQA 439 Query: 417 QSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 S PP F++F T + Y+R++ RLR F G PI + Sbjct: 440 SSRPPKFVLFTT--GFLDPGYRRFITRRLRETFGFEGTPIEV 479 >gi|46199327|ref|YP_004994.1| GTP-binding protein EngA [Thermus thermophilus HB27] gi|46196952|gb|AAS81367.1| GTP-binding protein [Thermus thermophilus HB27] Length = 431 Score = 230 bits (586), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 135/469 (28%), Positives = 249/469 (53%), Gaps = 44/469 (9%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 ++ + IVG PNVGKS+LFNRL+KK+ AVV + PG+TRD G + F +VDT G+ Sbjct: 1 MHKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLW 60 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 G K++ ++ + A+ +A ++LF +D +A +T D+ + +LR+K P+I+V+ K+ Sbjct: 61 SGDKWE--KKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKV 118 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D + +Y L F + + S+EH G EL I+ Sbjct: 119 DDPKHELYLGPLYGLGFGDPIPTSSEHARGLEELLEAIW--------------------- 157 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 E P I +E + + +R+A+VGRPN GKS+L+N +LG R++ + G TRD+ Sbjct: 158 ERLPVRQIETEPEVA------GIRLAIVGRPNAGKSSLLNAILGEERVIVSEEPGTTRDA 211 Query: 242 VSISWNWKNHPIEIFDTAGMRK-PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 + + + + + DTAG+RK P + E L +++S++++ + ++++D PF+ Sbjct: 212 IDVEFFFGGQRFVLVDTAGIRKRPESLVEEL---AIRRSLRAMDEADVVLLVVD---PFQ 265 Query: 301 KQD--LRIVDSVFNTGHAVVLALNKWDMV--SDKLNLLQDLRTKAIKNLPQIGDIYINTI 356 D L++ + + G V+L + KWD+V D + + LR K + +L + ++ + + Sbjct: 266 VGDRELKLANEALDRGKPVLLVITKWDLVDKEDAPKMRRLLREK-LAHLDHLPRVFTSAL 324 Query: 357 SGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQI 416 T + LD + + +++L +TR+ T+ LN W+ + P + ++ Y TQ Sbjct: 325 ---TRQNLDRIFREAVRLHELNQTRVPTAELNRWVAVWTSRVQMPNFKGKPLKILYATQP 381 Query: 417 QSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 + +PP+F+ F P + +++ YL NR+ + L +P R+ F+ + Sbjct: 382 EVAPPTFVFFVNHPEFVTRAFENYLKNRIGEDLGLREVPFRLVFRGRRE 430 >gi|297170725|gb|ADI21748.1| predicted GTPases [uncultured actinobacterium HF0130_15N16] Length = 442 Score = 230 bits (586), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 141/455 (30%), Positives = 239/455 (52%), Gaps = 29/455 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +++VG PNVGKSTLFNR++ ++ A+V PG+TRDR +A G F +VDT G Sbjct: 10 VSVVGRPNVGKSTLFNRILGRREAIVEEKPGVTRDRKVLEAEWQGYRFELVDTGGWMPSG 69 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N + +++ Q+E AI+++ LI+ ++D G+T D I + LRK ++ +++ NK+D+ Sbjct: 70 N-ELDDKVSAQSERAISDSDLIVLVVDGTTGVTEEDARIGAILRKSDVAVLLAVNKIDSN 128 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSEL-HSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + ++ SL E + +SA H T +L S++ + + N + I N EE Sbjct: 129 QRDVDIWDFLSLGLGEPMGVSALHSRNTGDLLDSIVSSLPAINFDNETTKEIMANPIEEE 188 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 P +A+VGRPNVGKSTL NRL+G R + G TRD++ Sbjct: 189 IPG-------------------VAIVGRPNVGKSTLFNRLIGDERSVVHDMPGTTRDAID 229 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + P+ DTAGMR+ +R+ + E + ++++++ + ++++D++ QD Sbjct: 230 TVVETELGPLRFIDTAGMRRKARVDDDTEYYSNLRALRAIDKADVALLVIDSSEGVTSQD 289 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 R+ + V G +V+ +NKW+ V + DL + + L +G+ + IS TG G Sbjct: 290 QRLAERVDAAGCPIVILMNKWETVDQESK--DDLMFQVGQRLHFLGESPVLRISALTGRG 347 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 + L+ ++ ++TR+ T +N +Q Q P P R+ Y TQ +PP+F Sbjct: 348 VHRLVSALEAAIDAYETRVPTRKVNEVIQLAQSAQPAP----HGGRVLYATQGAINPPTF 403 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 +F ++P SY RYL RLR F+L PI++ Sbjct: 404 TLFTN--KELPASYVRYLERRLREEFNLGVTPIKV 436 >gi|293115597|ref|ZP_05792245.2| ribosome-associated GTPase EngA [Butyrivibrio crossotus DSM 2876] gi|292809015|gb|EFF68220.1| ribosome-associated GTPase EngA [Butyrivibrio crossotus DSM 2876] Length = 446 Score = 230 bits (586), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 136/461 (29%), Positives = 238/461 (51%), Gaps = 33/461 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFN L +++++V + PG+TRDR+Y F ++DT GI Sbjct: 11 VAIVGRPNVGKSTLFNALAGEQISIVKDTPGVTRDRIYADVTWLNYNFTLIDTGGIEPES 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 I QM +Q E+AI A +I+F++D + G+ D + + LR+ P+++V NK+D+ Sbjct: 71 KDIILSQMREQAEIAIASADVIIFMVDVRQGLVDSDSKVANMLRRSGKPVVLVVNKVDSF 130 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + YE Y+L + V +S+ LG ++ + K F + Sbjct: 131 QKMMTDVYEFYNLGIGDPVPVSSVGKLGIGDMLDEVVKHFPES----------------- 173 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 + + +P RIA+VG+PNVGKS++IN+++G +R++ +G TRD++ Sbjct: 174 ----------AAEDEEDERP-RIAIVGKPNVGKSSIINKIVGESRVIVSDIAGTTRDAID 222 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + + DTAG+R+ ++I E LE+ ++ +++ +V + +V++DAT +QD Sbjct: 223 TDITYNGNEYVFIDTAGLRRKNKIKEELERYSIIRTVTAVERADVVLVVIDATEGVTEQD 282 Query: 304 LRIVDSVFNTGHAVVLALNKWDMV--SDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTG 361 +I G +++ +NKWD + +DK R K I + +I IS +TG Sbjct: 283 AKIAGIAHERGKGIIVVVNKWDAIEKNDKTIYEHTNRIKDILSFMPYAEILF--ISAKTG 340 Query: 362 EGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 + + + ++ + + RI T LN L + PP+ + ++ Y+TQ+ PP Sbjct: 341 QRVGKIFDTIDMVIENQNLRIQTGVLNEILSEAVAMQQPPSDKGKRLKIFYMTQVSVKPP 400 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 +F+IF + SY RYL N++R F G +R + Sbjct: 401 TFVIFVNNKELMHFSYTRYLENKIRDTFGFRGTALRFIIRE 441 >gi|210633108|ref|ZP_03297675.1| hypothetical protein COLSTE_01584 [Collinsella stercoris DSM 13279] gi|210159262|gb|EEA90233.1| hypothetical protein COLSTE_01584 [Collinsella stercoris DSM 13279] Length = 444 Score = 230 bits (586), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 145/472 (30%), Positives = 245/472 (51%), Gaps = 39/472 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL NR+ + A+V G+TRDR Y A NG F +VDT GI K Sbjct: 6 VAIVGRPNVGKSTLVNRIAQTSDAIVHQSRGVTRDRSYHVADWNGREFTLVDTGGIEPMK 65 Query: 65 NCSI-AKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + + A + DQ A EA +ILF++D G+T D ++ +RK P ++ NK+D Sbjct: 66 SDDVFATSIRDQALAAAEEAAVILFVVDGSVGVTEEDESVARMVRKLKKPTFLLVNKLDN 125 Query: 124 RIAQR-NFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 + N +E YSL + V +SA H GT +L + + + + E Sbjct: 126 PARENDNLWEFYSLGVGDPVAVSALHGHGTGDLLDEVVALLPE------------DAGEE 173 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 + P LR+A++GRPN GKS+L N+++G +R + + +G TRD++ Sbjct: 174 DEPD----------------TLRVAIIGRPNAGKSSLFNKMIGNDRSIVSNIAGTTRDAI 217 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + DTAG+RK S + E++E ++ + ++++ + ++++DA+ +Q Sbjct: 218 DTVVERDGKRYRMVDTAGIRKKSTVYENIEYYSMVRGLRAIDRADVALLVVDASTGVTEQ 277 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSD--KLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 D ++ + G A+V+ LNKWD++ D + + + + + + P + I+ ++GR+ Sbjct: 278 DQKVANLAIERGCALVVLLNKWDLLKDDYERDAVMETVDRRLTMAPWAEYLRISAMTGRS 337 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLK--YITQIQS 418 + D++ + E ITTS LN L T ++ T+ + RLK Y+TQ Sbjct: 338 VHKIWDMVDAAAERRAC---HITTSQLNRLL--TDMREFGHTVSDGKRRLKMHYVTQTGE 392 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 PP+F F + + ++YKRY+ NR+R F G PIR+ F++ K+ K+ Sbjct: 393 KPPAFTFFVNHTDLVTDNYKRYIENRMRATFDFKGTPIRLRFRAKKSDKDKE 444 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/126 (25%), Positives = 61/126 (48%), Gaps = 2/126 (1%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 +S+P+ +A+VGRPNVGKSTL+NR+ + + G+TRD +W + DT Sbjct: 1 MSRPI-VAIVGRPNVGKSTLVNRIAQTSDAIVHQSRGVTRDRSYHVADWNGREFTLVDTG 59 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+ +P + + +++ + + ++D ++ ++D + V L Sbjct: 60 GI-EPMKSDDVFATSIRDQALAAAEEAAVILFVVDGSVGVTEEDESVARMVRKLKKPTFL 118 Query: 320 ALNKWD 325 +NK D Sbjct: 119 LVNKLD 124 >gi|239917900|ref|YP_002957458.1| GTP-binding protein Era [Micrococcus luteus NCTC 2665] gi|281413599|ref|ZP_06245341.1| GTP-binding protein EngA [Micrococcus luteus NCTC 2665] gi|239839107|gb|ACS30904.1| GTP-binding protein Era [Micrococcus luteus NCTC 2665] Length = 512 Score = 230 bits (586), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 148/457 (32%), Positives = 238/457 (52%), Gaps = 32/457 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA-DG 63 +AIVG PNVGKSTL NR++ ++ AVV + PG+TRDR+ A NG F +VDT G D Sbjct: 77 LAIVGRPNVGKSTLVNRIIGRREAVVEDVPGVTRDRVSYDAEWNGREFTVVDTGGWEHDA 136 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 K I +++ +Q ELA++ A ++F++D+ G+T D A+ S LR+K+ P+I+ +NK+D Sbjct: 137 KG--IHRRVAEQAELAVDVADAVVFVVDATVGMTATDEAVVSMLRRKDRPVIVAANKVDD 194 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + + ++SL F +SA H G ++L + EE Sbjct: 195 MVQEADAATLWSLGFGYPYPVSAVHGRGVADLLDAALEALP-----------------EE 237 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 S + G P RIA+VGRPNVGKS+L+N+L G +R++ +G TRD V Sbjct: 238 SAHGGLVPRG--------GPRRIALVGRPNVGKSSLLNKLAGSDRVVVDDLAGTTRDPVD 289 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 DTAG+R+ + + ++ ++ E +VLL+A +QD Sbjct: 290 ELVELGGRLWRFVDTAGIRRRQHMAHGADYYASLRTASALDRAEVAVVLLEAPQVISEQD 349 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 +RI+ V ++G A+V+A NKWD V + + L + ++L + IS +TG Sbjct: 350 VRILQMVLDSGRALVIAFNKWDQVDE--DRRHQLAKEIDRDLAHVAWAPRVNISAKTGWH 407 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 D L+ ++ W TRI T LN++L + +P P + R+ + TQ+ S PP F Sbjct: 408 KDRLVPALDLALDSWDTRIPTGKLNAFLGELVAAHPHPLRGGKQPRILFATQVSSRPPKF 467 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCF 460 ++F T + Y+R+++ RLR F G P+ + Sbjct: 468 VLFTT--GFLDPGYRRFIVRRLRETFGFEGTPLEIGM 502 Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 48/171 (28%), Positives = 84/171 (49%), Gaps = 12/171 (7%) Query: 203 PLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMR 262 P +A+VGRPNVGKSTL+NR++G + G+TRD VS W + DT G Sbjct: 74 PPVLAIVGRPNVGKSTLVNRIIGRREAVVEDVPGVTRDRVSYDAEWNGREFTVVDTGGWE 133 Query: 263 KPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALN 322 ++ + ++ +++ +V + + ++DAT+ D +V + V++A N Sbjct: 134 HDAK---GIHRRVAEQAELAVDVADAVVFVVDATVGMTATDEAVVSMLRRKDRPVIVAAN 190 Query: 323 KWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 K D +++Q+ + +L G Y +S G G+ DL+ + LE Sbjct: 191 KVD------DMVQEADAATLWSL---GFGYPYPVSAVHGRGVADLLDAALE 232 >gi|148984151|ref|ZP_01817446.1| phosphoglycerate dehydrogenase-related protein [Streptococcus pneumoniae SP3-BS71] gi|147923440|gb|EDK74553.1| phosphoglycerate dehydrogenase-related protein [Streptococcus pneumoniae SP3-BS71] gi|301800517|emb|CBW33156.1| GTP-binding protein EngA [Streptococcus pneumoniae OXC141] Length = 436 Score = 230 bits (586), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 141/461 (30%), Positives = 245/461 (53%), Gaps = 39/461 (8%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAIVG PNVGKSTLFNR+ +++++V + G+TRDR+Y F+++DT GI D Sbjct: 5 TIAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRSFSMIDTGGI-DD 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + +Q+ Q E+A+ EA +I+F++ K GIT D + L K + P+I+ NK+D Sbjct: 64 VDAPFMEQIKHQAEIAMEEADVIVFVVSGKEGITDADEYVARKLYKTHKPVILAVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + Y+ Y+L E + IS+ H +GT ++ I + N P N+ EE Sbjct: 124 PEMRNDIYDFYALGLGEPLPISSVHGIGTGDVLDAIVE-------NLP------NEYEEE 170 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 +P ++ +++GRPNVGKS+LIN +LG +R++ +G TRD++ Sbjct: 171 NP----------------DVIKFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAID 214 Query: 244 ISW-NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + + + DTAGMRK ++ E+ E+ +V ++M+++ + +++++A + Sbjct: 215 THFTDTDGQEFTMIDTAGMRKSGKVYENTEKYSVMRAMRAIDRSDVVLMVINAEEGIREY 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDK----LNLLQDLRTKAIKNLPQIGDIYINTISG 358 D RI G +++ +NKWD + N +D+R + + LP I+++ + Sbjct: 275 DKRIAGFAHEAGKGMIIVVNKWDTLEKDNHTMKNWEEDIREQ-FQYLPYAPIIFVSAL-- 331 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 T + L L + +I++ TRI ++ LN + NP PT + ++ Y TQ+ + Sbjct: 332 -TKQRLHKLPEMIKQISESQNTRIPSAVLNDVIMDAIAINPTPTDKGKRLKIFYATQVAT 390 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 PP+F+IF + SY R+L N++R F G PI + Sbjct: 391 KPPTFVIFVNEEELMHFSYLRFLENQIRKAFVFEGTPIHLI 431 >gi|315223115|ref|ZP_07864983.1| ribosome-associated GTPase EngA [Streptococcus anginosus F0211] gi|315187804|gb|EFU21551.1| ribosome-associated GTPase EngA [Streptococcus anginosus F0211] Length = 436 Score = 230 bits (586), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 139/462 (30%), Positives = 241/462 (52%), Gaps = 31/462 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAIVG PNVGKST FNR+ +++++V + G+TRDR+Y A F+++DT GI D Sbjct: 5 TIAIVGRPNVGKSTFFNRIAGERISIVEDVEGVTRDRIYATAEWLNRKFSMIDTGGI-DD 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + +Q+ Q E+A++EA +I+F++ K GIT D + L K + PII+ NK+D Sbjct: 64 VDAPFMEQIKHQAEIAMDEADIIVFVVSGKEGITDADEYVARMLYKTHKPIILAVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + ++ Y+L + +S+ H +GT ++ L+ I N NEE Sbjct: 124 PEMRSEIFDFYALGLGDPYPVSSVHGIGTGDI----------------LDAIVENLPNEE 167 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV- 242 +V+N ++ +++GRPNVGKS+LIN +LG +R++ +G TRD++ Sbjct: 168 ------------AVEN-PDMIKFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAID 214 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 ++ + + + DTAGMRK ++ E+ E+ +V ++M+++ + +++L+A + Sbjct: 215 TVFTDNEGQEFTMIDTAGMRKSGKVYENTEKYSVMRAMRAIDRSDVVLMVLNAEEGIREY 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D RI G +++ +NKWD + +Q+ + I +S T + Sbjct: 275 DKRIAGFAHEAGKGIIIVVNKWDTLEKDNKTMQNWEADIRDQFQYLSYAPIVFVSALTKQ 334 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 L L + I++ TRI ++ LN + NP PT + ++ Y TQ+ + PP+ Sbjct: 335 RLHQLPDMIKRISQSQNTRIPSAVLNDVIMDAIAINPTPTDKGKRLKIFYATQVATKPPT 394 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 F+IF + SY R+L N++R F G PI + + K Sbjct: 395 FVIFVNEEELMHFSYMRFLENQIRKAFVFEGTPIHLIARKRK 436 >gi|311899123|dbj|BAJ31531.1| putative GTP-binding protein EngA [Kitasatospora setae KM-6054] Length = 484 Score = 230 bits (586), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 137/466 (29%), Positives = 237/466 (50%), Gaps = 28/466 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL NR++ ++ AVV + PG+TRDR+ +A+ G F ++DT G + Sbjct: 47 LAIVGRPNVGKSTLVNRIIGRREAVVEDRPGVTRDRVSYEAMWAGRRFKVLDTGGW-EID 105 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + Q EL I +A +LF++D+K G T + A+ +R+ P+++ +NK+D Sbjct: 106 VLGLDAMVAGQAELGIEQADAVLFVVDAKVGATDTEDALVRLIRRSGKPVVLCANKVDGP 165 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + ++SL E +SA H G+ +L + K+ P P ++ + + Sbjct: 166 STEAEAAYLWSLGLGEPYPVSALHGRGSGDLLDAVLKVL----PEAPPQLFGDGL----A 217 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P P R+A++GRPNVGKS+L+N++ G +R++ +G TRD V Sbjct: 218 P---------------GGPRRVALIGRPNVGKSSLLNKVAGEDRVVVNELAGTTRDPVDE 262 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + DTAG+R+ T + ++ ++ E +VL+DA+ +QD Sbjct: 263 LIELGGKTWKFIDTAGIRRRVHQTAGADFYASLRTSAALDKAEVAVVLVDASETLAEQDT 322 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 RI+ G AVV+A NKWD + ++ L + ++L Q+ +S +TG + Sbjct: 323 RIISMAVEAGRAVVIAYNKWDQLDEERRFY--LEREIERDLVQVQWAPRVNVSAKTGRHM 380 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 + L+ ++ W+TRI T+ LN++L + +P P + R+ + TQ + PP F+ Sbjct: 381 EKLVPAIETALAGWETRIPTARLNAFLGELVASHPHPIRGGKQPRILFGTQAGTRPPRFV 440 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +F + + Y+R++ RLR F G PI + + + KK Sbjct: 441 LFSS--GFLEAGYRRFVERRLREEFGFVGTPISISVRVREKRTKKK 484 >gi|333028090|ref|ZP_08456154.1| putative GTP-binding protein EngA [Streptomyces sp. Tu6071] gi|332747942|gb|EGJ78383.1| putative GTP-binding protein EngA [Streptomyces sp. Tu6071] Length = 488 Score = 229 bits (585), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 144/476 (30%), Positives = 238/476 (50%), Gaps = 49/476 (10%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD-- 62 +A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ +A G F +VDT G Sbjct: 52 LAVVGRPNVGKSTLVNRIIGRREAVVEDRPGVTRDRVTYEAEWAGRRFKLVDTGGWEQDV 111 Query: 63 -GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 G + S+A Q E AI + ++F++D+ G T D A+ LRK P+++ +NK+ Sbjct: 112 LGIDASVAA----QAEYAIEASDAVVFVVDATVGATDTDEAVVRLLRKAGKPVVLCANKV 167 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D + + ++SL E +SA H GT ++ + + Sbjct: 168 DGPSGEADAAMLWSLGLGEPHPVSALHGRGTGDMLDAVLEALP----------------- 210 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 ++PK+ G I P R+A++GRPNVGKS+L+N+L G +R++ Q+G TRD Sbjct: 211 -DAPKDTFGGTG------IGGPRRVALIGRPNVGKSSLLNKLAGEDRVVVNEQAGTTRDP 263 Query: 242 V-------SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLD 294 V ++W + DTAG+RK + + + ++ +V E +VL+D Sbjct: 264 VDELIELGGVTWKF-------VDTAGIRKRVHLQQGADYYASLRTAAAVEKAEVAVVLID 316 Query: 295 ATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYIN 354 QD RI+ + G A+VLA NKWD + ++ L + + L Q+ Sbjct: 317 GADSISAQDQRILTMAVDAGRALVLAYNKWDTLDEERRYY--LEREIERELGQVAWAPRV 374 Query: 355 TISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYIT 414 IS RTG ++ L+ ++ W+TR+ T LN++L + +P P + R+ + T Sbjct: 375 NISARTGRHMEKLVPALETALAGWETRVPTGRLNAFLGELVAAHPHPVRGGKQPRILFGT 434 Query: 415 QIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 Q + PP F++F + I Y+R++ RLR F G P+++ + + KK Sbjct: 435 QAGTKPPRFVLFAS--GFIEAGYRRFIERRLREEFGFEGTPVQISVRVREKRGRKK 488 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 56/216 (25%), Positives = 97/216 (44%), Gaps = 23/216 (10%) Query: 169 NHPLEMIENNKRNEESPKE--NITSEGKSSVKNISK--------PL-RIAVVGRPNVGKS 217 +HP E E+ + + + +E V+++ PL R+AVVGRPNVGKS Sbjct: 4 HHPFEGEEHGALGDAEYERFMELAAEEGFDVEDVEDAIGEAGHGPLPRLAVVGRPNVGKS 63 Query: 218 TLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVK 277 TL+NR++G + + G+TRD V+ W ++ DT G + ++ Sbjct: 64 TLVNRIIGRREAVVEDRPGVTRDRVTYEAEWAGRRFKLVDTGGWEQD---VLGIDASVAA 120 Query: 278 KSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDL 337 ++ ++ + + ++DAT+ D +V + G VVL NK D S + + Sbjct: 121 QAEYAIEASDAVVFVVDATVGATDTDEAVVRLLRKAGKPVVLCANKVDGPSGEADAAM-- 178 Query: 338 RTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 L +G + +S G G D++ +VLE Sbjct: 179 -------LWSLGLGEPHPVSALHGRGTGDMLDAVLE 207 >gi|313837716|gb|EFS75430.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL037PA2] gi|314927402|gb|EFS91233.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL044PA1] gi|314972655|gb|EFT16752.1| ribosome-associated GTPase EngA [Propionibacterium acnes HL037PA3] gi|328907486|gb|EGG27252.1| GTP-binding protein EngA [Propionibacterium sp. P08] Length = 456 Score = 229 bits (585), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 141/460 (30%), Positives = 236/460 (51%), Gaps = 44/460 (9%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ A +G F +VDT G A Sbjct: 24 VAVVGRPNVGKSTLVNRILGRRAAVVQDVPGVTRDRVSYDAEWSGRQFVLVDTGGWAS-D 82 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +A + +Q ELAI+ A +LF++D+ G T D A+ LR+ + PI++ +NK+D Sbjct: 83 ASGMAAMIAEQAELAISTADAVLFVVDANVGTTDEDEAVVQVLRQSHKPIVVAANKVDDA 142 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + +++L E +SA H G+ +L + + + +H Sbjct: 143 RGELEAATMWNLGLGEPHPVSAIHGRGSGDLLDALIAVLPKDRTSHE------------- 189 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 +S+G P R+A+VG+PNVGKS+L+NR+ NR++ SG T D V Sbjct: 190 -----SSDG---------PRRVAIVGKPNVGKSSLLNRIARQNRVVVSDISGTTVDPVDE 235 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + DTAG+RK + E ++ ++ E +V++DA+ QDL Sbjct: 236 LVTVGGTVYQFIDTAGLRKRVKEASGHEYYASLRTQAAIERAEVCVVVVDASESISDQDL 295 Query: 305 RIVDSVFNTGHAVVLALNKWDMVS------DKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 RI+ V N G A+V+A NKWD+ + + +D++T + P++ IS Sbjct: 296 RILTMVENAGRAMVIAYNKWDLTDEERRRYLEREIERDVQTYSWA--PRV------NISA 347 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 G +D L ++ + W+TR++T LN++L + +P P + R+ + TQ + Sbjct: 348 LNGRNVDKLERAIETAAEGWETRVSTGKLNAFLGRLAAAHPHPVRGGKQPRILFGTQAHN 407 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 PP+F +F + + Y R++I RLR +F +G P+ + Sbjct: 408 CPPTFALFTS--GLFDQGYVRFIIRRLREDFGFAGSPVHV 445 >gi|254468967|ref|ZP_05082373.1| GTP-binding protein EngA [beta proteobacterium KB13] gi|207087777|gb|EDZ65060.1| GTP-binding protein EngA [beta proteobacterium KB13] Length = 466 Score = 229 bits (585), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 147/472 (31%), Positives = 244/472 (51%), Gaps = 41/472 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKS+LFN+L K K A+V G+TRDR G+++I+ + + I+D+ G+ K Sbjct: 4 VAIVGRPNVGKSSLFNKLTKSKKAIVSEFEGLTRDRQVGKSVIDNLAYEIIDSGGLNFSK 63 Query: 65 -NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD- 122 N ++ Q+ +QT LA +EA LILF++D K+G+ P D I+ LRKK+ I +V NK+D Sbjct: 64 NNNALDTQILNQTNLAADEADLILFVVDYKSGLLPDDQVISKLLRKKDKDICLVINKVDG 123 Query: 123 --TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 IA+ +F + L +++++ S H+ G +I ++ K P+ Sbjct: 124 VSDEIAKLDFSK---LGYQQVICTSMSHNYGI----DLIVELIVHKLDGIPI-------- 168 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 + I +IA++G+PN GKSTLIN L+G +RL+ G T D Sbjct: 169 ----------------LNEIDDNFKIAILGKPNAGKSTLINSLIGSDRLIASDLPGTTID 212 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ I + + DTAG+R+ ++T E+ + KS++S + ++++D+++ Sbjct: 213 SIEIEIELNSDKYILVDTAGIRRKGKVTVKEEKFALLKSLESAKNANFILLIIDSSVGIT 272 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVS--DKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 QD ++ + ++L NKWD+++ +K +L + N I +I IS Sbjct: 273 SQDQALITECLKSFKPLILLFNKWDLLNQYEKERFDSELEKFNL-NFGFIDNI---KISA 328 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 L + ++ I + TS LN L+ + +PP +LK+++ + Sbjct: 329 EKKTNLSKIFKNIKAIRQHLDKEYKTSILNKLLEDALINHPPSISKGLRPKLKFMSFVSK 388 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 SP +F I + SYKRYL N R SL IP++M F++S NPY K Sbjct: 389 SPLAFKIHGNHLEDLAPSYKRYLDNYFRKALSLQSIPLKMIFEASDNPYAHK 440 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 59/195 (30%), Positives = 94/195 (48%), Gaps = 27/195 (13%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + IAI+G PN GKSTL N L+ + + PG T D + + +N + +VDTAGI Sbjct: 176 FKIAILGKPNAGKSTLINSLIGSDRLIASDLPGTTIDSIEIEIELNSDKYILVDTAGIRR 235 Query: 63 GKNCSIAKQ---MNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 ++ ++ + E A N A+ IL +IDS GIT D A+ + K P+I++ N Sbjct: 236 KGKVTVKEEKFALLKSLESAKN-ANFILLIIDSSVGITSQDQALITECLKSFKPLILLFN 294 Query: 120 KMD--TRIAQRNF---YEIYSLDFKEI--VEISAEHDLGTSELH---------------- 156 K D + + F E ++L+F I ++ISAE S++ Sbjct: 295 KWDLLNQYEKERFDSELEKFNLNFGFIDNIKISAEKKTNLSKIFKNIKAIRQHLDKEYKT 354 Query: 157 SVIFKIFKQKYPNHP 171 S++ K+ + NHP Sbjct: 355 SILNKLLEDALINHP 369 >gi|317484901|ref|ZP_07943790.1| ribosome-associated GTPase EngA [Bilophila wadsworthia 3_1_6] gi|316923839|gb|EFV45036.1| ribosome-associated GTPase EngA [Bilophila wadsworthia 3_1_6] Length = 452 Score = 229 bits (585), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 142/476 (29%), Positives = 247/476 (51%), Gaps = 43/476 (9%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAII-NGVIFNIVDTAG 59 M+ IA++G PNVGKSTLFNRL++ A+ + PG+TRDR+ G +G F ++DT G Sbjct: 1 MLPKIALLGRPNVGKSTLFNRLIRSNRAITHDRPGVTRDRMEGVVRSRSGRSFTLIDTGG 60 Query: 60 IADGKNCSIA----------KQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRK 109 + + S+A ++ QT+ A++EA + ++D + G+ P+D + SF+R+ Sbjct: 61 VTLDSHHSVADGPEGLRGFEAEILQQTQAAMDEASVFCLVVDGRDGLMPFDEHLASFVRR 120 Query: 110 KNIPIIIVSNKMDTRIAQRN-FYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYP 168 P ++V NK+D + E ++L F I+ +SAEH L + + + P Sbjct: 121 AGKPTLLVVNKVDGMEHEDTMLAEFHALGFP-ILALSAEHGHNIRALEEEMVDLLPVEDP 179 Query: 169 NHPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNR 228 + E+ EN+ LR+A++GRPN GKS+L+N ++G +R Sbjct: 180 D------------AEAKPENV--------------LRLAMLGRPNAGKSSLVNAMIGEDR 213 Query: 229 LLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCET 288 ++ +G TRDSV I + E DTAG+R+ +RIT+++E+ +V S+++ + Sbjct: 214 MIVSDVAGTTRDSVDIPFVSDGRACEFVDTAGVRRRTRITDTVERFSVNSSLKTTTKADV 273 Query: 289 TIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQI 348 T+ ++DA QD R++D + ++ +NK D+V K Q K K + Q Sbjct: 274 TLYVIDALEGVTAQDKRLIDLLDERKTPFMILVNKIDLVGRK---EQAALEKNFKEVLQF 330 Query: 349 G-DIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRY 407 + + +S GL ++ +I + TRI T LN +++ ++ PP + Sbjct: 331 CPHVPVLMVSAMKQVGLGRIVPLAAQIREECNTRIGTGALNRAMEEVLTKHQPPVVKRSR 390 Query: 408 NRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSS 463 + Y+TQ + +PP+F+ F + +++ E+Y RYL LR F + PIR+ +SS Sbjct: 391 PKFFYLTQAEVAPPTFVFFVSDADRVSETYARYLDRSLRKIFRIEHAPIRVRLRSS 446 >gi|223933730|ref|ZP_03625704.1| small GTP-binding protein [Streptococcus suis 89/1591] gi|302024351|ref|ZP_07249562.1| GTP-binding protein EngA [Streptococcus suis 05HAS68] gi|330833346|ref|YP_004402171.1| GTP-binding protein EngA [Streptococcus suis ST3] gi|223897611|gb|EEF63998.1| small GTP-binding protein [Streptococcus suis 89/1591] gi|329307569|gb|AEB81985.1| GTP-binding protein EngA [Streptococcus suis ST3] Length = 436 Score = 229 bits (585), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 135/462 (29%), Positives = 239/462 (51%), Gaps = 31/462 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAIVG PNVGKSTLFNR+ +++++V + G+TRDR+Y F+++DT GI D Sbjct: 5 TIAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRKFSLIDTGGI-DD 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + +Q+ Q E+A++EA +I+F++ K G+T D ++ L K N P+I+V NK+D Sbjct: 64 VDAPFMEQIKHQAEIAMDEADVIVFVVSGKEGVTDADEYVSRILYKTNKPVILVVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + Y+ YSL + +S+ H +GT ++ I + N P++ E N Sbjct: 124 PEMRNDIYDFYSLGLGDPYPVSSVHGIGTGDVLDAIIE-------NLPVQEAEEN----- 171 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 ++ +++GRPNVGKS+LIN +LG R++ +G TRD++ Sbjct: 172 -----------------PDIIKFSLIGRPNVGKSSLINAILGEERVIASPVAGTTRDAID 214 Query: 244 ISW-NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + + + + DTAGMRK ++ E+ E+ +V ++M+++ + +++++A + Sbjct: 215 THFTDPEGQEFTMIDTAGMRKSGKVYENTEKYSVMRAMRAIERSDVILMVINAEEGIREY 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D RI G +++ +NKWD + + ++ + I +S T + Sbjct: 275 DKRIAGFAHEAGKGMIIVVNKWDTLEKDNHTMKKWEDDIRDQFQYLSYAPIIFVSALTKQ 334 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 L L + I++ TRI ++ LN + NP PT + ++ Y TQ+ + PP+ Sbjct: 335 RLHKLPEMIKAISESQNTRIPSAVLNDVIMDAIAINPTPTDKGKRLKIFYATQVATKPPT 394 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 F++F + SY R+L N++R F G PI + + K Sbjct: 395 FVVFVNEEELMHFSYMRFLENQIRKAFVFEGTPIHLIARKRK 436 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 40/130 (30%), Positives = 65/130 (50%), Gaps = 13/130 (10%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAII-NGVIFNIVDTAGI 60 I +++G PNVGKS+L N ++ ++ + G TRD + G F ++DTAG+ Sbjct: 174 IIKFSLIGRPNVGKSSLINAILGEERVIASPVAGTTRDAIDTHFTDPEGQEFTMIDTAGM 233 Query: 61 -------ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIP 113 + + S+ + M AI + +IL +I+++ GI YD I F + Sbjct: 234 RKSGKVYENTEKYSVMRAMR-----AIERSDVILMVINAEEGIREYDKRIAGFAHEAGKG 288 Query: 114 IIIVSNKMDT 123 +IIV NK DT Sbjct: 289 MIIVVNKWDT 298 >gi|292559009|gb|ADE32010.1| Small GTP-binding domain containing protein [Streptococcus suis GZ1] Length = 436 Score = 229 bits (585), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 137/462 (29%), Positives = 238/462 (51%), Gaps = 31/462 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAIVG PNVGKSTLFNR+ +++++V + G+TRDR+Y F+++DT GI D Sbjct: 5 TIAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRKFSLIDTGGI-DD 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + +Q+ Q E+A++EA +I+F++ K G+T D ++ L K N P+I+V NK+D Sbjct: 64 VDAPFMEQIKHQAEIAMDEADVIVFVVSGKEGVTDADEYVSRILYKTNKPVILVVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + Y+ YSL + +S+ H +GT ++ I IEN E Sbjct: 124 PEMRNDIYDFYSLGLGDPYPVSSVHGIGTGDVLDAI---------------IENLPAQEA 168 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 +I ++ +++GRPNVGKS+LIN +LG R++ +G TRD++ Sbjct: 169 EENPDI--------------IKFSLIGRPNVGKSSLINAILGEERVIASPVAGTTRDAID 214 Query: 244 ISW-NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + + + + DTAGMRK ++ E+ E+ +V ++M+++ + +++++A + Sbjct: 215 THFTDPEGQEFTMIDTAGMRKSGKVYENTEKYSVMRAMRAIERSDVILMVINAEEGIREY 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D RI G +++ +NKWD + + ++ + I +S T + Sbjct: 275 DKRIAGFAHEAGKGMIIVVNKWDTLEKDNHTMKQWEDDIRDQFQYLSYAPIIFVSALTKQ 334 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 L L + I++ TRI ++ LN + NP PT + ++ Y TQ+ + PP+ Sbjct: 335 RLHKLPEMIKAISESQNTRIPSAVLNDVIMDAIAINPTPTDKGKRLKIFYATQVATKPPT 394 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 F+IF + SY R+L N++R F G PI + + K Sbjct: 395 FVIFVNEEELMHFSYMRFLENQIRKAFVFEGTPIHLIARKRK 436 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 40/130 (30%), Positives = 65/130 (50%), Gaps = 13/130 (10%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAII-NGVIFNIVDTAGI 60 I +++G PNVGKS+L N ++ ++ + G TRD + G F ++DTAG+ Sbjct: 174 IIKFSLIGRPNVGKSSLINAILGEERVIASPVAGTTRDAIDTHFTDPEGQEFTMIDTAGM 233 Query: 61 -------ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIP 113 + + S+ + M AI + +IL +I+++ GI YD I F + Sbjct: 234 RKSGKVYENTEKYSVMRAMR-----AIERSDVILMVINAEEGIREYDKRIAGFAHEAGKG 288 Query: 114 IIIVSNKMDT 123 +IIV NK DT Sbjct: 289 MIIVVNKWDT 298 >gi|328957352|ref|YP_004374738.1| GTP-binding protein EngA [Carnobacterium sp. 17-4] gi|328673676|gb|AEB29722.1| GTP-binding protein EngA [Carnobacterium sp. 17-4] Length = 437 Score = 229 bits (585), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 133/461 (28%), Positives = 239/461 (51%), Gaps = 30/461 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST+FNR+V +++++V + G+TRDR+Y A G FN++DT GI D Sbjct: 6 VAIVGRPNVGKSTIFNRIVGERISIVEDVSGVTRDRIYAPAEWLGKEFNVIDTGGI-DLG 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +Q+ Q E+A++EA +I+F+ K IT D + L + N P+++ NK+D Sbjct: 65 DEPFLEQIKYQAEIAMDEADVIIFITSVKEHITDADENVAKILYRTNKPVLLAVNKVDNP 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + ++ YSL E IS H LG +L F ++ EE Sbjct: 125 EMRNDIFDFYSLGLGEPFPISGSHGLGIGDLLDAAISHFPEE--------------QEEE 170 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 +++ ++ +++GRPNVGKS+L+N +LG +R++ S +G TRD++ Sbjct: 171 YDDSV--------------IKFSLIGRPNVGKSSLVNAILGEDRVIVSSIAGTTRDAIDT 216 Query: 245 SWNWKNH-PIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 ++ ++ + DTAGMRK ++ E+ E+ +V ++++++ + + +L+A +QD Sbjct: 217 AFVGEDGTEFVMIDTAGMRKKGKVYENTERYSVLRALRAIERSDVVLCVLNAEEGIREQD 276 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 ++ G +++ +NKWD + + ++ + + I +S T + Sbjct: 277 KKVAGYAHEAGKGIIIVVNKWDTLEKDNHTMKAFEEQIRSEFLYLSYAPIIFVSALTKQR 336 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 L+ L + ++ RI ++ LN + NP PT + R+ Y TQ+ PP+F Sbjct: 337 LNKLPEIIERVSMNQNLRIQSATLNEVILDAVAMNPTPTDKGKRLRIYYATQVAVKPPTF 396 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 ++F P + SY R+L NR+R F+ G PI + + K Sbjct: 397 VVFVNEPEMMHFSYARFLENRIRDAFTFEGTPIHLIVRRRK 437 >gi|302561447|ref|ZP_07313789.1| ribosome-associated GTPase EngA [Streptomyces griseoflavus Tu4000] gi|302479065|gb|EFL42158.1| ribosome-associated GTPase EngA [Streptomyces griseoflavus Tu4000] Length = 496 Score = 229 bits (585), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 143/462 (30%), Positives = 233/462 (50%), Gaps = 40/462 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD-- 62 +A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ +A G F +VDT G Sbjct: 61 LAVVGRPNVGKSTLVNRIIGRREAVVEDKPGVTRDRVTYEAEWAGRRFKVVDTGGWEQDV 120 Query: 63 -GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 G + S+A Q E AI A ++F++D+K G T D A+ LRK P+++ +NK+ Sbjct: 121 LGIDASVAA----QAEYAIEAADAVVFVVDAKVGATDTDEAVVRLLRKAGKPVVLCANKV 176 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D + + ++SL E +SA H GT ++ + + Sbjct: 177 DGPSGEADAAYLWSLGLGEPYPVSALHGRGTGDMLDQVLEALP----------------- 219 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 E+P + S + P R+A++GRPNVGKS+L+N++ G R++ +G TRD Sbjct: 220 -EAPAQTFGS-------AVGGPRRVALIGRPNVGKSSLLNKVAGEERVVVNELAGTTRDP 271 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 V + DTAG+RK + + + ++ +V E +VL+DA Sbjct: 272 VDEMIELGGKTWKFVDTAGIRKRVHLQQGADYYASLRTAAAVEKAEVAVVLIDAADSISV 331 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVSD--KLNLLQDLRTKAIKNLPQIGDIYINTISGR 359 QD RIV G A+VLA NKWD + + + L +++ T+ L Q+ +S R Sbjct: 332 QDQRIVTMAVEAGRALVLAYNKWDTLDEERRYYLEREIETE----LGQVAWAPRVNVSAR 387 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 TG ++ L+ ++ + W+TR+ T LN++L + +P P + R+ + TQ + Sbjct: 388 TGRHMEKLVPAIEAALEGWETRVPTGRLNAFLGELVAAHPHPVRGGKQPRILFGTQAGTK 447 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 PP F++F + I Y+R++ RLR F G PI + + Sbjct: 448 PPRFVLFAS--GFIEAGYRRFIERRLREEFGFEGTPIHISVR 487 >gi|218245012|ref|YP_002370383.1| GTP-binding protein EngA [Cyanothece sp. PCC 8801] gi|257058036|ref|YP_003135924.1| GTP-binding protein EngA [Cyanothece sp. PCC 8802] gi|226741133|sp|B7K1S0|DER_CYAP8 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|218165490|gb|ACK64227.1| small GTP-binding protein [Cyanothece sp. PCC 8801] gi|256588202|gb|ACU99088.1| small GTP-binding protein [Cyanothece sp. PCC 8802] Length = 452 Score = 229 bits (584), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 136/462 (29%), Positives = 227/462 (49%), Gaps = 31/462 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKSTL NRL + A+V + PGITRDR Y F IVDT G+ Sbjct: 6 VAIIGRPNVGKSTLANRLAGDQHAIVHDEPGITRDRTYRPGFWQDRDFQIVDTGGLVFDD 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 + + +Q+ A+NEA +F++D + G T D I +LR++ +P+++ NK ++ Sbjct: 66 DTEFLPLIREQSLAALNEASAAIFVVDGQTGPTTGDLEIADWLRQQPVPVLLAVNKCESP 125 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + + L IS H GT EL + Sbjct: 126 ELGLIQATQFWELGLGNPYPISGIHGNGTGELLDDLITYL-------------------- 165 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 P E IT S +++A++GRPNVGKS+L+N LLG NR + SG TRD++ Sbjct: 166 PPPEEITQ---------SDEIKVAIIGRPNVGKSSLLNALLGENRAIVSPISGTTRDAID 216 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + DTAG+R+ + E ++ ++ +++R C+ + ++DA QD Sbjct: 217 TVIQHNEQTYRLIDTAGIRRKKNVEYGAEFFSINRAFKAIRRCDVVLFVIDAIDGVTDQD 276 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 L++ D + G +VVL +NKWD V + + +T L + I +S TG+ Sbjct: 277 LKLADRIIEEGRSVVLVINKWDAVDKDSYTIYEYKTNIFSRLYFMEWAPIIFVSAMTGQR 336 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKT-QLQNPPPTIFNRYNRLKYITQIQSSPPS 422 ++ ++ V + + R+TT+ +N LQ+ +PP T + ++ Y TQ+ + PP+ Sbjct: 337 VNKILELVNSSTEEHRRRVTTAVINEVLQEAVTWHSPPTTRQGKQGKIYYGTQVSTQPPT 396 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 +F P + E+Y+RY+ ++ R G PIR+ ++ K Sbjct: 397 IALFVNDPKRFNENYRRYIESQFRKQLGFPGTPIRLLWRGKK 438 >gi|300087240|ref|YP_003757762.1| ribosome-associated GTPase EngA [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299526973|gb|ADJ25441.1| ribosome-associated GTPase EngA [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 439 Score = 229 bits (584), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 143/464 (30%), Positives = 240/464 (51%), Gaps = 39/464 (8%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 ++AIVG NVGKSTL NRL ++ A+ + PG TRDR+Y +G F +VDT G+A G Sbjct: 6 SVAIVGRQNVGKSTLLNRLTGRRQAITQDLPGTTRDRMYVPVSHSGREFLLVDTGGMAGG 65 Query: 64 KNCSI-AKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + +N+Q +A+ EA +I+FL +++ G+TP D I +R+ + P+I+V NK+D Sbjct: 66 DTGDVFTPAVNEQVRIAMREASVIVFLTEARFGLTPQDEEIAEEVRRSSKPVILVVNKVD 125 Query: 123 TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF--KQKYPNHPLEMIENNKR 180 + E ++L E V +SA H GT L + ++ ++ P P Sbjct: 126 NDRQGHHAIEFHALGMGEPVPVSAYHGRGTDALLDRVVELLPAEEALPTEP--------- 176 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 + LRIA+ GR NVGKS+L+N L+G +R + G TRD Sbjct: 177 ---------------------ERLRIAIAGRANVGKSSLLNTLVGEDRAIVSPVPGTTRD 215 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 +V ++ + + DTAG+R+ RI +E+ +V +S+ ++ + +++LDA P Sbjct: 216 AVDTPIDFGTGGVVLIDTAGIRRRGRIERGVEEYSVIRSLHAIDRADVVLIVLDAGEPAT 275 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVS--DKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 QD I ++L +NK D++ D +++ ++ K +P I ++ +S Sbjct: 276 AQDTHIAGYAREKCRGLILVVNKSDLLKEVDMAEFDKNMASR-FKFIPYARQINVSALS- 333 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 GEG+D ++ + E+ + RI T LNS ++ ++ PP+ R ++ Y TQI Sbjct: 334 --GEGVDKIIPAAFEVQQERTRRIPTPELNSLVRHALARHAPPSSAGRTLKVLYATQIGV 391 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 SPP + F P + S++R+L NRLR + G PI++ F+ Sbjct: 392 SPPEIVFFVNDPALVHFSFERFLENRLREAYGFEGTPIKITFKG 435 >gi|293365923|ref|ZP_06612626.1| ribosome-associated GTPase EngA [Streptococcus oralis ATCC 35037] gi|307702327|ref|ZP_07639285.1| small GTP-binding domain protein [Streptococcus oralis ATCC 35037] gi|315613624|ref|ZP_07888531.1| ribosome-associated GTPase EngA [Streptococcus sanguinis ATCC 49296] gi|291315601|gb|EFE56051.1| ribosome-associated GTPase EngA [Streptococcus oralis ATCC 35037] gi|307624130|gb|EFO03109.1| small GTP-binding domain protein [Streptococcus oralis ATCC 35037] gi|315314315|gb|EFU62360.1| ribosome-associated GTPase EngA [Streptococcus sanguinis ATCC 49296] Length = 436 Score = 229 bits (584), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 140/466 (30%), Positives = 248/466 (53%), Gaps = 39/466 (8%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAIVG PNVGKSTLFNR+ +++++V + G+TRDR+Y F+++DT GI D Sbjct: 5 TIAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRSFSMIDTGGI-DD 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + +Q+ Q E+A+ EA +I+F++ K GIT D + L K + P+I+ NK+D Sbjct: 64 VDAPFMEQIKHQAEIAMEEADVIVFVVSGKEGITDADEYVARKLYKTHKPVILAVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + ++ Y+L E + IS+ H +GT ++ I + N P E+ EE Sbjct: 124 PEMRNDIFDFYALGLGEPLPISSVHGIGTGDVLDAIVE-------NLPHEV------EEE 170 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 +P ++ +++GRPNVGKS+LIN +LG +R++ +G TRD++ Sbjct: 171 NP----------------DVIKFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAID 214 Query: 244 ISW-NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + + + DTAGMRK ++ E+ E+ +V ++M+++ + +++L+A + Sbjct: 215 THFTDTDGQEFTMIDTAGMRKSGKVYENTEKYSVMRAMRAIDRSDVVLMVLNAEEGIREY 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLL----QDLRTKAIKNLPQIGDIYINTISG 358 D RI G +++ +NKWD + + + +D+R + + LP ++++ + Sbjct: 275 DKRIAGFAHEAGKGMIIVVNKWDTLEKDNHTMKKWEEDIREQ-FQYLPYAPIVFVSAL-- 331 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 T + L L + +I++ TRI ++ LN + NP PT + ++ Y TQ+ + Sbjct: 332 -TKQRLHKLPEMIKQISESQNTRIPSAVLNDVIMDAIAINPTPTDKGKRLKIFYATQVAT 390 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 PP+F+IF + SY R+L N++R F G PI + + K Sbjct: 391 KPPTFVIFVNEEELMHFSYLRFLENQIRKAFVFEGTPIHLIARKRK 436 >gi|185178903|ref|ZP_02964672.1| ribosome-associated GTPase EngA [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|195867881|ref|ZP_03079880.1| ribosome-associated GTPase EngA [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|225551179|ref|ZP_03772125.1| GTP-binding protein EngA [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|184209162|gb|EDU06205.1| ribosome-associated GTPase EngA [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|195660458|gb|EDX53716.1| ribosome-associated GTPase EngA [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|225378994|gb|EEH01359.1| GTP-binding protein EngA [Ureaplasma urealyticum serovar 8 str. ATCC 27618] Length = 442 Score = 229 bits (584), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 139/463 (30%), Positives = 249/463 (53%), Gaps = 37/463 (7%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAIVG PNVGKS+LFNR++ ++ ++V + PG+TRDR+Y F ++DT GI Sbjct: 3 TIAIVGKPNVGKSSLFNRILMRRKSIVDDQPGVTRDRIYDVGNWLTRDFMLIDTGGIISS 62 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKK--NIPIIIVSNKM 121 ++ + +N+Q AINEA+ I+FL+ +K GI D I L++K + +I+V NK+ Sbjct: 63 ED-TYQDNINEQVLFAINEANTIIFLVSAKDGINNDDKKIAKMLKEKAKDKKVILVVNKV 121 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLE-MIENNKR 180 ++ N E+YS F + +ISAEH +G +L + K + P++ +E +R Sbjct: 122 ESEKYYFNEGELYSFGFGKFFKISAEHGIGMGDLLDELVK-------DMPIQNALEQQER 174 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 + ++GRPNVGKS+L N +LG R++ +++G TRD Sbjct: 175 -----------------------FKFCIIGRPNVGKSSLTNTILGEQRMIVNAEAGSTRD 211 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ +++ N I DTAG+R+ +I E++E+ V ++ +++ + +++LD + PF+ Sbjct: 212 SIDNDFSYHNKKYTIIDTAGVRRKGKIVEAVEKYAVLRTQKAIERSQLILLVLDGSEPFK 271 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKN-LPQIGDIYINTISGR 359 +QD + ++ ++ +NKWD +++K + ++ K I++ + I IS Sbjct: 272 EQDEVVGGLAYDANIPTIIVVNKWDNIANKNSHTMEMVKKQIRSQFKYLSWAPIVFISAL 331 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQ-LQNPPPTIFNRYNRLKYITQIQS 418 + + + ++ + + ++ TS LN + K Q PPP R + + Y+ Q+QS Sbjct: 332 DNKRIHTIFETIELVREQAMRKVATSLLNDVVIKANAFQEPPPFKGGRIS-ISYVVQVQS 390 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 P+F++ C P + SY RY+ N +R F +PI + +Q Sbjct: 391 QIPTFVLKCNNPKFLHFSYARYIENEIRKAFGFDSVPITLYWQ 433 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 43/129 (33%), Positives = 65/129 (50%), Gaps = 3/129 (2%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI-A 61 + I+G PNVGKS+L N ++ ++ +V G TRD + + + I+DTAG+ Sbjct: 175 FKFCIIGRPNVGKSSLTNTILGEQRMIVNAEAGSTRDSIDNDFSYHNKKYTIIDTAGVRR 234 Query: 62 DGKNC-SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 GK ++ K +T+ AI + LIL ++D D + NIP IIV NK Sbjct: 235 KGKIVEAVEKYAVLRTQKAIERSQLILLVLDGSEPFKEQDEVVGGLAYDANIPTIIVVNK 294 Query: 121 MDTRIAQRN 129 D IA +N Sbjct: 295 WDN-IANKN 302 >gi|33862476|ref|NP_894036.1| GTP-binding protein EngA [Prochlorococcus marinus str. MIT 9313] gi|41017013|sp|Q7V8X0|DER_PROMM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|33640589|emb|CAE20378.1| GTP-binding protein (HSR1-related):AAA ATPase superfamily [Prochlorococcus marinus str. MIT 9313] Length = 455 Score = 229 bits (584), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 136/469 (28%), Positives = 236/469 (50%), Gaps = 42/469 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKSTL NRL + + A+V + PG+TRDR Y F +VDT G+ Sbjct: 6 VAIIGRPNVGKSTLVNRLCRSREAIVDDKPGVTRDRTYQDGFWGDREFKVVDTGGLVFDD 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM--- 121 + ++ +Q LA+ EA + L ++D + G+T D +I +LR + P ++ NK Sbjct: 66 DSEFLPEIREQANLALAEASVALVIVDGQQGVTAADESIAEWLRTQPCPTLVAVNKCESP 125 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D +A E + L E ISA H GT +L + + K+ Sbjct: 126 DQGLAM--AAEFWRLGLGEPFPISAIHGAGTGDLLDRVLSLLPPKH-------------- 169 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 E P+E+ +P+++A++GRPNVGKS+L+N + G R + G TRD+ Sbjct: 170 -EEPEED-------------EPIQMAIIGRPNVGKSSLLNAICGEPRAIVSPIRGTTRDT 215 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 + + HP + DTAG+R+ + E + +S +++ + ++++DA + Sbjct: 216 IDTRLEREGHPWRLIDTAGIRRRRSVNYGPEFFGINRSFKAIERSDVCVLVIDALDGVTE 275 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLL----QDLRTKAIKNLPQIGDIYINTIS 357 QD R+ + + G A VL +NKWD V + + ++LR K + L ++ + ++ Sbjct: 276 QDQRLAGRIEDDGRACVLVVNKWDAVEKDSHTMPMVEKELRAK-LYFLDWATMLFTSALT 334 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKT-QLQNPPPTIFNRYNRLKYITQI 416 G+ E + L +E + + R++TS +N L++ ++PP + R RL Y TQ+ Sbjct: 335 GQRVESIFALASLAVEQH---RRRVSTSVVNEVLKEALSWRSPPTSRGGRQGRLYYGTQV 391 Query: 417 QSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 S PPSF +F P ++Y+RY+ +LR G P+++ ++ + Sbjct: 392 ASRPPSFTLFVNDPKLFGDTYRRYVERQLREGLGFDGTPLKLFWRGKQQ 440 >gi|282882100|ref|ZP_06290741.1| ribosome-associated GTPase EngA [Peptoniphilus lacrimalis 315-B] gi|281298130|gb|EFA90585.1| ribosome-associated GTPase EngA [Peptoniphilus lacrimalis 315-B] Length = 439 Score = 229 bits (584), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 132/452 (29%), Positives = 229/452 (50%), Gaps = 29/452 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 ++I+G PNVGKSTLFN+++ KK+++ + PG+TRDR+Y A F +VDT G+ Sbjct: 6 VSIIGKPNVGKSTLFNKILGKKISITEDTPGVTRDRIYQTASWLDYSFLLVDTGGLDLKD 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + Q ++A+ + +I+FL D G++P D I ++LRK N +I+ NK D + Sbjct: 66 EDIFMSSIKAQVDIAVETSQVIIFLTDGIEGVSPTDREIANYLRKSNKKVILAVNKCDAK 125 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + N Y+ + L E +S+E G +L + K + + ++I Sbjct: 126 KTKENIYDFFELGLGEPYLVSSEQGTGLGDLLDEVTKSIDKYVADKEDDLI--------- 176 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 R++++G+PNVGKS+L N L R + + +G TRD++ Sbjct: 177 --------------------RVSIIGKPNVGKSSLFNYLSKEERSIVTNIAGTTRDAIDT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 +K++ DTAG+RK +I ES+E+ +V +++ ++ ++L+DAT +QD Sbjct: 217 KIIYKDNEYIFVDTAGLRKRKKIKESIERYSVIRTLTAIERSSVCLLLVDATEGISEQDS 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 +I + A+++ +NKWD + +++ + LP + I IS G + Sbjct: 277 KIAGFAHDNNKAMIICVNKWDAIEKDTYTMKNFEADVRRELPFLSYAPIIFISAMKGTRV 336 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 ++L+ + ++ + RI T LN L ++ L N PP+ R +L Y +Q+ PP FL Sbjct: 337 EELLGLIELVDNNYNHRIQTGVLNDILNRSVLNNQPPSDKGRRGKLYYGSQVSVRPPRFL 396 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 + SY RYL N++R FS +G PI Sbjct: 397 LSVNDSKLFHFSYMRYLENQIREAFSFTGTPI 428 >gi|300871553|ref|YP_003786426.1| GTP-binding protein EngA [Brachyspira pilosicoli 95/1000] gi|300689254|gb|ADK31925.1| GTP-binding protein, EngA [Brachyspira pilosicoli 95/1000] Length = 489 Score = 229 bits (584), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 148/491 (30%), Positives = 244/491 (49%), Gaps = 35/491 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAI+G PNVGKSTLFNR ++ ++V G+TRD + I+ + FN+ DT G+ D Sbjct: 4 IAILGRPNVGKSTLFNRFAGRRKSIVDPTAGVTRDISIAKTYIDDIAFNVFDTGGLLDMS 63 Query: 65 NCSIAKQMNDQT-ELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + +++ ++ + A +EAHL+LF++D+ P D + +RK N PII+V NK+D+ Sbjct: 64 EDVLNEKVREKALKTATDEAHLLLFVVDAHQ-THPDDRHFINTIRKLNKPIILVINKIDS 122 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLE---MIENNKR 180 E YSL K+IV ISAEH+ G +L I ++F++ + E ENNK Sbjct: 123 DSHNNLINEFYSLGIKDIVAISAEHNNGIDDLREKILEVFERIGIDLEAEREATQENNKE 182 Query: 181 N------------------------EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGK 216 + +ES K+ E + K + IA+VG+PN GK Sbjct: 183 DNVVVNDEEFFEEDDFDEEYDEDASKESKKQYRLDEYIAK----KKIINIAIVGKPNAGK 238 Query: 217 STLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTV 276 STL+N L+G +R + + +G TRDS+ ++N+K I + DTAG+RK + +E +V Sbjct: 239 STLLNTLIGKDRSIVSNIAGTTRDSIDETFNFKGDDICLVDTAGIRKKKNVNTDVEYYSV 298 Query: 277 KKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQD 336 ++++++ + I++LD QD I + + +++A NKWD + +K D Sbjct: 299 NRAIKAIEASDVCILMLDVFEGLTDQDKTIANLIIERRKGIIIAANKWD-IREKGTTWND 357 Query: 337 LRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQL 396 + P + + + + L+ + + K R T L + + Sbjct: 358 YESYMKSAFPVLNYAFYARVCATRKNDAEKLLSLAIRVAKTRLQRFETHALTETMVRATR 417 Query: 397 QNPPPTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 + N + ++ Y+TQ +PP+F +FC P+K+ YKRYL NR R F G PI Sbjct: 418 EYSISAGGNPF-KIFYVTQTGVNPPAFAVFCNHPHKLNSHYKRYLENRFREMFDFRGTPI 476 Query: 457 RMCFQSSKNPY 467 + F+ Y Sbjct: 477 ILNFRKRGKKY 487 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 57/184 (30%), Positives = 86/184 (46%), Gaps = 13/184 (7%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 I IAIVG PN GKSTL N L+ K ++V N G TRD + G +VDTAGI Sbjct: 225 IINIAIVGKPNAGKSTLLNTLIGKDRSIVSNIAGTTRDSIDETFNFKGDDICLVDTAGIR 284 Query: 62 DGKNCSIAKQMN--DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 KN + + ++ AI + + + ++D G+T D I + + ++ III +N Sbjct: 285 KKKNVNTDVEYYSVNRAIKAIEASDVCILMLDVFEGLTDQDKTIANLIIERRKGIIIAAN 344 Query: 120 KMDTRIAQR--NFYEIYS------LDFKEIVEISAEHDLGTSELHSVIFKIFK---QKYP 168 K D R N YE Y L++ + A +L S+ ++ K Q++ Sbjct: 345 KWDIREKGTTWNDYESYMKSAFPVLNYAFYARVCATRKNDAEKLLSLAIRVAKTRLQRFE 404 Query: 169 NHPL 172 H L Sbjct: 405 THAL 408 >gi|251781814|ref|YP_002996116.1| GTP-binding protein EngA [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390443|dbj|BAH80902.1| GTP-binding protein [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|323126626|gb|ADX23923.1| GTP-binding protein EngA [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 436 Score = 229 bits (584), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 134/462 (29%), Positives = 236/462 (51%), Gaps = 31/462 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AIVG PNVGKSTLFNR+ +++++V + G+TRDR+Y F+++DT GI D Sbjct: 5 TVAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRQFSLIDTGGI-DD 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + +Q+ Q ++A+ EA +I+F++ K G+T D ++ L + N P+I+ NK+D Sbjct: 64 VDAPFMEQIKHQAQIAMEEADVIVFVVSGKEGVTDADEYVSKILYRTNTPVILAVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + Y+ YSL + +S+ H +GT ++ I + N P+E +E N Sbjct: 124 PEMRNDIYDFYSLGLGDPYPVSSVHGIGTGDVLDAIVE-------NLPVEEVEEN----- 171 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 +R +++GRPNVGKS+LIN +LG +R++ +G TRD++ Sbjct: 172 -----------------DDIIRFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAID 214 Query: 244 ISW-NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + + + DTAGMRK +I E+ E+ +V ++M+++ + +++++A + Sbjct: 215 THFTDADGQEFTMIDTAGMRKSGKIYENTEKYSVMRAMRAIDRSDVVLMVINAEEGIREY 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D RI G +++ +NKWD + + + + I +S T + Sbjct: 275 DKRIAGFAHEAGKGMIIVVNKWDTIDKDNHTVAQWEADIRDQFQFLAYAPIIFVSALTKQ 334 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 L+ L + I+ RI ++ LN + NP PT + ++ Y TQ+ PP+ Sbjct: 335 RLNKLPELIKRISDSQNKRIPSAVLNDVIMDAIAINPTPTDKGKRLKIFYATQVAVKPPT 394 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 F+IF + SY R+L N++R F+ G PI + + K Sbjct: 395 FVIFVNEEELMHFSYLRFLENQIRAAFTFEGTPIHLIARKRK 436 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 68/132 (51%), Gaps = 17/132 (12%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRL---YGQAIINGVIFNIVDTA 58 I +++G PNVGKS+L N ++ + + G TRD + + A +G F ++DTA Sbjct: 174 IIRFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTHFTDA--DGQEFTMIDTA 231 Query: 59 GI-------ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKN 111 G+ + + S+ + M AI+ + ++L +I+++ GI YD I F + Sbjct: 232 GMRKSGKIYENTEKYSVMRAMR-----AIDRSDVVLMVINAEEGIREYDKRIAGFAHEAG 286 Query: 112 IPIIIVSNKMDT 123 +IIV NK DT Sbjct: 287 KGMIIVVNKWDT 298 >gi|171059545|ref|YP_001791894.1| GTP-binding protein EngA [Leptothrix cholodnii SP-6] gi|238689085|sp|B1XXK9|DER_LEPCP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|170776990|gb|ACB35129.1| small GTP-binding protein [Leptothrix cholodnii SP-6] Length = 448 Score = 229 bits (584), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 156/474 (32%), Positives = 239/474 (50%), Gaps = 40/474 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTLFNRL ++ A+V + G+TRDR YG ++ F ++DT G Sbjct: 5 IAIVGRPNVGKSTLFNRLTGRRDAIVADFAGLTRDRHYGDGKLDNHEFIVIDTGGFEPDS 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I K+M QT A+ EA ++F++D +AG++ DH I +LR +++ +NK + Sbjct: 65 TSGIYKEMAKQTRQAVAEADAVVFVVDVRAGLSAQDHDIARYLRATGKRVLLAANKAEGM 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 E Y L E + +S+ H G L +EM E Sbjct: 125 KDGPQLAEFYELGMGEPLAVSSAHGQGVRSL----------------IEMALEGIEPPEP 168 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 + ++N +P R+AV GRPNVGKSTLIN LG RL+ G TRD++ + Sbjct: 169 EEGYSEE----ELRN--RPTRLAVAGRPNVGKSTLINTWLGEERLVAFDLPGTTRDAIHV 222 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + E+ DTAG+R+ ++ ES+E+ +V K++Q++ ++L+DAT QD Sbjct: 223 PFERGDKKYELIDTAGLRRKGKVFESIEKFSVVKTLQAISDANVVLLLIDATEGVSDQDA 282 Query: 305 RIVDSVFNTGHAVVLALNKWDMV-SDKLNLLQ---DLRTKAIKNLPQIGDIYINTISGRT 360 I V + G AVV+A+NKWD + S + LQ + R +K P + IS + Sbjct: 283 HIAGYVLDAGRAVVIAINKWDAIDSYQRETLQRSIEQRLAFLKFAP------VLMISAKK 336 Query: 361 GEGLDDLMVSVLEINKLWKT---RITTSYLNS-WLQKTQLQNPPPTIFNRYNRLKYITQI 416 +GL L + I+ W + ++ T L L+ + Q P R +L+Y Q Sbjct: 337 RQGLGPLWKA---IDDAWASATRKLPTPQLTRLLLEAVEYQQPKRAGAVR-PKLRYAHQG 392 Query: 417 QSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I + E YKRYL R R +F L G P+R+ ++S NP++ K Sbjct: 393 GQNPPIIVIHGNAVEHVTEVYKRYLEARFREHFKLVGTPMRIELRASHNPFVSK 446 >gi|228476619|ref|ZP_04061301.1| ribosome-associated GTPase EngA [Streptococcus salivarius SK126] gi|228251814|gb|EEK10879.1| ribosome-associated GTPase EngA [Streptococcus salivarius SK126] Length = 457 Score = 229 bits (584), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 137/462 (29%), Positives = 241/462 (52%), Gaps = 31/462 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AIVG PNVGKSTLFNR+ +++++V + G+TRDR+Y A F+++DT GI D Sbjct: 26 TVAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTSAEWLNRQFSLIDTGGI-DD 84 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + +Q+ Q ++A+ EA +I+F++ K G+T D + L K N P+I+ NK+D Sbjct: 85 VDAPFMEQIKHQADIAMTEADVIVFVVSGKEGVTDADEYVARILYKTNKPVILAVNKVDN 144 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + Y+ YSL + +S+ H +GT ++ I + N P E+ EE Sbjct: 145 PEMRADIYDFYSLGLGDPYPVSSVHGIGTGDVLDAIVE-------NLPTEV------EEE 191 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 +P +R +++GRPNVGKS+LIN +LG +R++ +G TRD++ Sbjct: 192 NP----------------DIIRFSLIGRPNVGKSSLINAILGEDRVIASPIAGTTRDAID 235 Query: 244 ISW-NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 ++ + + + DTAGMRK ++ E+ E+ +V +SM+++ + +++++A + Sbjct: 236 TNFVDSEGQEYTMIDTAGMRKSGKVYENTEKYSVMRSMRAIDRSDIVLMVINAEEGIREY 295 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D RI G +++ +NKWD + + + + + I +S T + Sbjct: 296 DKRIAGFAHEAGKGIIIVVNKWDTIKKDNHTVANWEADIRDQFQFLSYAPIIFVSAETKQ 355 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 L+ L + I++ RI+++ LN + NP PT + ++ Y TQ+ PP+ Sbjct: 356 RLNKLPEMIKRISESQNRRISSAVLNDVIMDAIAINPTPTDKGKRLKIFYGTQVSVKPPT 415 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 F+IF + SY R+L N++R F G PI + + K Sbjct: 416 FVIFVNEEELMHFSYMRFLENQIRQAFGFEGTPIHLIARKRK 457 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/130 (30%), Positives = 67/130 (51%), Gaps = 13/130 (10%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIIN-GVIFNIVDTAGI 60 I +++G PNVGKS+L N ++ + + G TRD + + + G + ++DTAG+ Sbjct: 195 IIRFSLIGRPNVGKSSLINAILGEDRVIASPIAGTTRDAIDTNFVDSEGQEYTMIDTAGM 254 Query: 61 -------ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIP 113 + + S+ + M AI+ + ++L +I+++ GI YD I F + Sbjct: 255 RKSGKVYENTEKYSVMRSMR-----AIDRSDIVLMVINAEEGIREYDKRIAGFAHEAGKG 309 Query: 114 IIIVSNKMDT 123 IIIV NK DT Sbjct: 310 IIIVVNKWDT 319 >gi|116627238|ref|YP_819857.1| GTP-binding protein EngA [Streptococcus thermophilus LMD-9] gi|122268159|sp|Q03MB1|DER_STRTD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|116100515|gb|ABJ65661.1| Predicted GTPase [Streptococcus thermophilus LMD-9] Length = 436 Score = 229 bits (584), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 137/462 (29%), Positives = 241/462 (52%), Gaps = 31/462 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AIVG PNVGKSTLFNR+ +++++V + G+TRDR+Y A F+++DT GI D Sbjct: 5 TVAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTSAEWLNRQFSLIDTGGI-DD 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + +Q+ Q +A+ EA +I+F++ K G+T D + L K N P+I+ NK+D Sbjct: 64 VDAPFMEQIKHQAGIAMTEADVIVFVVSGKEGVTDADEYVARILYKTNKPVILAVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + Y+ YSL + +S+ H +GT ++ I + N P E+ EE Sbjct: 124 PEMRADIYDFYSLGLGDPYPVSSVHGIGTGDVLDAIVE-------NLPTEV------EEE 170 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 +P +R +++GRPNVGKS+LIN +LG +R++ +G TRD++ Sbjct: 171 NP----------------DIIRFSLIGRPNVGKSSLINAILGEDRVIASPIAGTTRDAID 214 Query: 244 ISW-NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 ++ + + + DTAGMRK ++ E+ E+ +V +SM+++ + +++++A + Sbjct: 215 TNFVDSEGQEYTMIDTAGMRKSGKVYENTEKYSVMRSMRAIDRSDVVLMVINAEEGIREY 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D RI G +++ +NKWD + + + + + I +S +T + Sbjct: 275 DKRIAGFAHEAGKGIIIVVNKWDTIKKDNHTVANWEADIRDQFQFLSYAPIVFVSAKTKQ 334 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 L+ L + I++ RI+++ LN + NP PT + ++ Y TQ+ PP+ Sbjct: 335 RLNKLPEMIKRISESQNRRISSAVLNDVIMDAIAINPTPTDKGKRLKIFYGTQVSVKPPT 394 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 F+IF + SY R+L N++R F G PI + + K Sbjct: 395 FVIFVNEEELMHFSYMRFLENQIRQAFGFEGTPIHLIARKRK 436 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 39/130 (30%), Positives = 67/130 (51%), Gaps = 13/130 (10%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIIN-GVIFNIVDTAGI 60 I +++G PNVGKS+L N ++ + + G TRD + + + G + ++DTAG+ Sbjct: 174 IIRFSLIGRPNVGKSSLINAILGEDRVIASPIAGTTRDAIDTNFVDSEGQEYTMIDTAGM 233 Query: 61 -------ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIP 113 + + S+ + M AI+ + ++L +I+++ GI YD I F + Sbjct: 234 RKSGKVYENTEKYSVMRSMR-----AIDRSDVVLMVINAEEGIREYDKRIAGFAHEAGKG 288 Query: 114 IIIVSNKMDT 123 IIIV NK DT Sbjct: 289 IIIVVNKWDT 298 >gi|146319380|ref|YP_001199092.1| GTP-binding protein EngA [Streptococcus suis 05ZYH33] gi|146321585|ref|YP_001201296.1| GTP-binding protein EngA [Streptococcus suis 98HAH33] gi|253752406|ref|YP_003025547.1| GTP-binding protein EngA [Streptococcus suis SC84] gi|253754232|ref|YP_003027373.1| GTP-binding protein EngA [Streptococcus suis P1/7] gi|253756166|ref|YP_003029306.1| GTP-binding protein EngA [Streptococcus suis BM407] gi|166225866|sp|A4W3F7|DER_STRS2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|166225868|sp|A4VX53|DER_STRSY RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|145690186|gb|ABP90692.1| Predicted GTPase [Streptococcus suis 05ZYH33] gi|145692391|gb|ABP92896.1| Predicted GTPase [Streptococcus suis 98HAH33] gi|251816695|emb|CAZ52336.1| GTP-binding protein EngA [Streptococcus suis SC84] gi|251818630|emb|CAZ56464.1| GTP-binding protein EngA [Streptococcus suis BM407] gi|251820478|emb|CAR47214.1| GTP-binding protein EngA [Streptococcus suis P1/7] gi|319758811|gb|ADV70753.1| GTP-binding protein EngA [Streptococcus suis JS14] Length = 436 Score = 229 bits (583), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 136/462 (29%), Positives = 238/462 (51%), Gaps = 31/462 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAIVG PNVGKSTLFNR+ +++++V + G+TRDR+Y F+++DT GI D Sbjct: 5 TIAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRKFSLIDTGGI-DD 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + +Q+ Q E+A++EA +I+F++ K G+T D ++ L K N P+I+V NK+D Sbjct: 64 VDAPFMEQIKHQAEIAMDEADVIVFVVSGKEGVTDADEYVSRILYKTNKPVILVVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + Y+ YSL + +S+ H +GT ++ I IEN E Sbjct: 124 PEMRNDIYDFYSLGLGDPYPVSSVHGIGTGDVLDAI---------------IENLPAQEA 168 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 +I ++ +++GRPNVGKS+LIN +LG R++ +G TRD++ Sbjct: 169 EENPDI--------------IKFSLIGRPNVGKSSLINAILGEERVIASPVAGTTRDAID 214 Query: 244 ISW-NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + + + + DTAGMRK ++ E+ E+ +V ++M+++ + +++++A + Sbjct: 215 THFTDPEGQEFTMIDTAGMRKSGKVYENTEKYSVMRAMRAIERSDVILMVINAEEGIREY 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D RI G +++ +NKWD + + ++ + I +S T + Sbjct: 275 DKRIAGFAHEAGKGMIIVVNKWDTLEKDNHTMKQWEDDIRDQFQYLSYAPIIFVSALTKQ 334 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 L L + I++ TRI ++ LN + NP PT + ++ Y TQ+ + PP+ Sbjct: 335 RLHKLPEMIKAISESQNTRIPSAVLNDVIMDAIAINPTPTDKGKRLKIFYATQVATKPPT 394 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 F++F + SY R+L N++R F G PI + + K Sbjct: 395 FVVFVNEEELMHFSYMRFLENQIRKAFVFEGTPIHLIARKRK 436 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 40/130 (30%), Positives = 65/130 (50%), Gaps = 13/130 (10%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAII-NGVIFNIVDTAGI 60 I +++G PNVGKS+L N ++ ++ + G TRD + G F ++DTAG+ Sbjct: 174 IIKFSLIGRPNVGKSSLINAILGEERVIASPVAGTTRDAIDTHFTDPEGQEFTMIDTAGM 233 Query: 61 -------ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIP 113 + + S+ + M AI + +IL +I+++ GI YD I F + Sbjct: 234 RKSGKVYENTEKYSVMRAMR-----AIERSDVILMVINAEEGIREYDKRIAGFAHEAGKG 288 Query: 114 IIIVSNKMDT 123 +IIV NK DT Sbjct: 289 MIIVVNKWDT 298 >gi|184201166|ref|YP_001855373.1| GTP-binding protein EngA [Kocuria rhizophila DC2201] gi|183581396|dbj|BAG29867.1| GTP-binding protein EngA [Kocuria rhizophila DC2201] Length = 499 Score = 229 bits (583), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 143/458 (31%), Positives = 229/458 (50%), Gaps = 32/458 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA-DG 63 +A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ +A NG F +VDT G D Sbjct: 64 VAVVGRPNVGKSTLVNRVIGRREAVVEDTPGVTRDRVSYKAEWNGKNFTLVDTGGWEQDA 123 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 K I K++ DQ ELA+ A +L ++D G+T D + + LR+ PII+V+NK D+ Sbjct: 124 KG--INKRVADQAELAVQNADAVLLVLDVTVGVTATDEGVVNMLRRVKKPIIVVANKADS 181 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + ++SL E +SA H G+ + + N E Sbjct: 182 PQLEIEATALWSLGMGEPFPVSALHGKGSGDALDALV-----------------NALPEF 224 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 S EG P R+A++GRPNVGKS+L+N+L G +R++ +G TRD V Sbjct: 225 SEVAEAELEG--------GPRRVALIGRPNVGKSSLLNKLAGSDRVVVDDTAGTTRDPVD 276 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 P DTAG+R+ + + + ++ ++ E +VLL +QD Sbjct: 277 EIVMLGGEPWRFIDTAGIRRRVHLQQGADFYASLRTQTALERAEVAVVLLAVDEVLSEQD 336 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 +RI+ ++G A+VLA NKWD + D+ L + ++L + +S +TG Sbjct: 337 VRILQMAVDSGRALVLAFNKWDTLDDERRFY--LEREIERDLAHVAWAPRVNMSAKTGWH 394 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 D L+ ++ W RI T LN++L + +P P + R+ + TQ+ S PP F Sbjct: 395 KDKLVPALHTALDSWDRRIPTGRLNAFLGEIVAAHPHPVRGGKQPRILFGTQVASRPPKF 454 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 ++F T + Y+R++ R+R F G P+ + + Sbjct: 455 VLFTT--GFLDPGYRRFIQRRIRETFGFEGTPLEVTMR 490 >gi|322375706|ref|ZP_08050218.1| ribosome-associated GTPase EngA [Streptococcus sp. C300] gi|321279414|gb|EFX56455.1| ribosome-associated GTPase EngA [Streptococcus sp. C300] Length = 436 Score = 229 bits (583), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 141/466 (30%), Positives = 247/466 (53%), Gaps = 39/466 (8%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAIVG PNVGKSTLFNR+ +++++V + G+TRDR+Y F+++DT GI D Sbjct: 5 TIAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRSFSMIDTGGI-DD 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + +Q+ Q E+A+ EA +I+F++ K GIT D + L K + P+I+ NK+D Sbjct: 64 VDAPFMEQIKHQAEIAMEEADVIVFVVSGKEGITDADEYVARKLYKTHKPVILAVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + ++ Y+L E + IS+ H +GT ++ I + N P E+ EE Sbjct: 124 PEMRNDIFDFYALGLGEPLPISSVHGIGTGDVLDAIVE-------NLPHEV------EEE 170 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 +P ++ +++GRPNVGKS+LIN +LG +R++ +G TRD++ Sbjct: 171 NP----------------DVIKFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAID 214 Query: 244 ISW-NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + + + DTAGMRK ++ E+ E+ +V ++M+++ + +++L+A + Sbjct: 215 THFTDTDGQEFTMIDTAGMRKSGKVYENTEKYSVMRAMRAIDRSDVVLMVLNAEEGIREY 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDK----LNLLQDLRTKAIKNLPQIGDIYINTISG 358 D RI G +++ +NKWD + N +D+R + + LP ++++ + Sbjct: 275 DKRIAGFAHEAGKGMIIVVNKWDTLDKDNHTMKNWEEDIREQ-FQYLPYAPIVFVSAL-- 331 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 T + L L + +I++ TRI ++ LN + NP PT + ++ Y TQ+ + Sbjct: 332 -TKQRLHKLPEMIKQISESQNTRIPSAVLNDVIMDAIAINPTPTDKGKRLKIFYATQVAT 390 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 PP+F+IF + SY R+L N++R F G PI + + K Sbjct: 391 KPPTFVIFVNEEELMHFSYLRFLENQIRKAFVFEGTPIHLIARKRK 436 >gi|302518233|ref|ZP_07270575.1| ribosome-associated GTPase EngA [Streptomyces sp. SPB78] gi|302427128|gb|EFK98943.1| ribosome-associated GTPase EngA [Streptomyces sp. SPB78] Length = 488 Score = 229 bits (583), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 144/476 (30%), Positives = 238/476 (50%), Gaps = 49/476 (10%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD-- 62 +A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ +A G F +VDT G Sbjct: 52 LAVVGRPNVGKSTLVNRIIGRREAVVEDRPGVTRDRVTYEAEWAGRRFKLVDTGGWEQDV 111 Query: 63 -GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 G + S+A Q E AI + ++F++D+ G T D A+ LRK P+++ +NK+ Sbjct: 112 LGIDASVAA----QAEYAIEASDAVVFVVDATVGATDTDEAVVRLLRKAGKPVVLCANKV 167 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D + + ++SL E +SA H GT ++ + + Sbjct: 168 DGPSGEADAAMLWSLGLGEPHPVSALHGRGTGDMLDAVLEALP----------------- 210 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 ++PK+ G I P R+A++GRPNVGKS+L+N+L G +R++ Q+G TRD Sbjct: 211 -DAPKDTFGGTG------IGGPRRVALIGRPNVGKSSLLNKLAGEDRVVVNEQAGTTRDP 263 Query: 242 V-------SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLD 294 V ++W + DTAG+RK + + + ++ +V E +VL+D Sbjct: 264 VDELIELGGVTWKF-------VDTAGIRKRVHLQQGADYYASLRTAAAVEKAEVAVVLID 316 Query: 295 ATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYIN 354 QD RI+ + G A+VLA NKWD + ++ L + + L Q+ Sbjct: 317 GADSISVQDQRILTMAVDAGRALVLAYNKWDTLDEERRYY--LEREIERELGQVAWAPRV 374 Query: 355 TISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYIT 414 IS RTG ++ L+ ++ W+TR+ T LN++L + +P P + R+ + T Sbjct: 375 NISARTGRHMEKLVPALETALAGWETRVPTGRLNAFLGELVAAHPHPVRGGKQPRILFGT 434 Query: 415 QIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 Q + PP F++F + I Y+R++ RLR F G P+++ + + KK Sbjct: 435 QAGTKPPRFVLFAS--GFIEAGYRRFIERRLREEFGFEGTPVQISVRVREKRGRKK 488 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 56/216 (25%), Positives = 97/216 (44%), Gaps = 23/216 (10%) Query: 169 NHPLEMIENNKRNEESPKE--NITSEGKSSVKNISK--------PL-RIAVVGRPNVGKS 217 +HP E E+ + + + +E V+++ PL R+AVVGRPNVGKS Sbjct: 4 HHPFEGEEHGALGDAEYERFMELAAEEGFDVEDVEDAIGEAGHGPLPRLAVVGRPNVGKS 63 Query: 218 TLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVK 277 TL+NR++G + + G+TRD V+ W ++ DT G + ++ Sbjct: 64 TLVNRIIGRREAVVEDRPGVTRDRVTYEAEWAGRRFKLVDTGGWEQD---VLGIDASVAA 120 Query: 278 KSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDL 337 ++ ++ + + ++DAT+ D +V + G VVL NK D S + + Sbjct: 121 QAEYAIEASDAVVFVVDATVGATDTDEAVVRLLRKAGKPVVLCANKVDGPSGEADAAM-- 178 Query: 338 RTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 L +G + +S G G D++ +VLE Sbjct: 179 -------LWSLGLGEPHPVSALHGRGTGDMLDAVLE 207 >gi|297198669|ref|ZP_06916066.1| ribosome-associated GTPase EngA [Streptomyces sviceus ATCC 29083] gi|297147167|gb|EDY58617.2| ribosome-associated GTPase EngA [Streptomyces sviceus ATCC 29083] Length = 492 Score = 229 bits (583), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 144/478 (30%), Positives = 239/478 (50%), Gaps = 54/478 (11%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD-- 62 +A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ +A G F +VDT G Sbjct: 56 LAVVGRPNVGKSTLVNRIIGRREAVVEDKPGVTRDRVTYEAEWAGRRFKVVDTGGWEQDV 115 Query: 63 -GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 G + S+A Q E AI A ++F++D+K G T D A+ LRK P+++ +NK+ Sbjct: 116 LGIDASVAA----QAEYAIEAADAVVFVVDAKVGATDTDEAVVRLLRKAGKPVVLAANKV 171 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D + + ++SL E +SA H GT ++ + + Sbjct: 172 DGLSGESDAAYLWSLGLGEPHPVSALHGRGTGDMLDAVLEALP----------------- 214 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 E+P++ + I P RIA++GRPNVGKS+L+N++ G R++ +G TRD Sbjct: 215 -EAPQQTFGT-------AIGGPRRIALIGRPNVGKSSLLNKVAGEERVVVNEMAGTTRDP 266 Query: 242 V-------SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLD 294 V ++W + DTAG+RK + + + ++ +V E ++L+D Sbjct: 267 VDELIELGGVTWKF-------VDTAGIRKRVHLQQGADYYASLRTAAAVEKAEVAVILID 319 Query: 295 ATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSD--KLNLLQDLRTKAIKNLPQIGDIY 352 + QD RIV G A+VLA NKWD + + + L +++ T+ L Q+ Sbjct: 320 GSESISVQDQRIVTMAVEAGRAIVLAYNKWDTLDEERRYYLEREIETE----LGQVAWAP 375 Query: 353 INTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKY 412 +S +TG ++ L+ ++ W+TR+ T LN++L + +P P + R+ + Sbjct: 376 RVNVSAKTGRHMEKLVPAIETALAGWETRVPTGRLNAFLGELVAAHPHPIRGGKQPRILF 435 Query: 413 ITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 TQ + PP F++F + I Y+R++ RLR F G PI + + + KK Sbjct: 436 GTQAGTKPPRFVLFAS--GFIEAGYRRFIERRLREEFGFDGTPIHISVRVREKRGTKK 491 >gi|320534114|ref|ZP_08034655.1| ribosome-associated GTPase EngA [Actinomyces sp. oral taxon 171 str. F0337] gi|320133693|gb|EFW26100.1| ribosome-associated GTPase EngA [Actinomyces sp. oral taxon 171 str. F0337] Length = 734 Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 141/461 (30%), Positives = 238/461 (51%), Gaps = 38/461 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI---A 61 +A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ A G F IVDT G Sbjct: 300 LAVVGRPNVGKSTLVNRVLGRREAVVQDTPGVTRDRVSYPAEWAGRRFTIVDTGGWEVDV 359 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 G + ++A Q E+A+ A +L ++D++ GIT D + LR+ P+++ +NK+ Sbjct: 360 AGLDAAVAT----QAEIAVEMADAVLLVVDAQVGITETDARVVRMLRRSGKPVVLAANKV 415 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D+ + + +++L E +SA H G+ E+ + +I E + Sbjct: 416 DSPAQEGDAAALWNLGLGEPFPVSALHGRGSGEVLDAVMEILP-----------EVSAVA 464 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 +P+ ++ RIA+VGRPNVGKS+L+N + G R++ +G TRD Sbjct: 465 AAAPEGDLH--------------RIALVGRPNVGKSSLLNSIAGRERVVVNETAGTTRDP 510 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 V DTAG+R+ + + + V ++ ++ E +VLLDA+ P + Sbjct: 511 VDEIIELDGRQWVFVDTAGIRRRVKQSRGADYYAVLRTQGAIDNAEVAVVLLDASEPISE 570 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIG-DIYINTISGRT 360 QD+R+V + G A+VL NKWD+V ++ + L + +L + +IN ++ RT Sbjct: 571 QDVRVVQQAVDAGRALVLVNNKWDLVDEERQKM--LLWEVEHDLAHVSWAPHIN-LAART 627 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G + L+ ++ + W TR+ T LN +L + Q P P + R+ + TQ+Q +P Sbjct: 628 GWHTNRLVRALDAALEGWTTRVPTGRLNGFLGQLQSATPHPVRGGKQPRILFATQVQVAP 687 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 P +IF T + Y+R++ RLR F +G PI++ + Sbjct: 688 PRIVIFTT--GFLDAGYRRFIERRLREEFGFTGTPIQIGVR 726 Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 71/151 (47%), Gaps = 12/151 (7%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 ++ IA+VG PNVGKS+L N + ++ VV G TRD + ++G + VDTAGI Sbjct: 472 LHRIALVGRPNVGKSSLLNSIAGRERVVVNETAGTTRDPVDEIIELDGRQWVFVDTAGIR 531 Query: 62 DGKNCSIAKQMND--QTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 S +T+ AI+ A + + L+D+ I+ D + +++V+N Sbjct: 532 RRVKQSRGADYYAVLRTQGAIDNAEVAVVLLDASEPISEQDVRVVQQAVDAGRALVLVNN 591 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDL 150 K D +R ++ + EHDL Sbjct: 592 KWDLVDEERQKMLLWEV----------EHDL 612 >gi|331265908|ref|YP_004325538.1| phosphoglycerate dehydrogenase, GTP-binding protein [Streptococcus oralis Uo5] gi|326682580|emb|CBZ00197.1| phosphoglycerate dehydrogenase, GTP-binding protein [Streptococcus oralis Uo5] Length = 436 Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 139/466 (29%), Positives = 248/466 (53%), Gaps = 39/466 (8%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AIVG PNVGKSTLFNR+ +++++V + G+TRDR+Y F+++DT GI D Sbjct: 5 TVAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRSFSMIDTGGI-DD 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + +Q+ Q E+A+ EA +I+F++ K GIT D + L K + P+I+ NK+D Sbjct: 64 VDAPFMEQIKHQAEIAMEEADVIVFVVSGKEGITDADEYVARKLYKTHKPVILAVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + ++ Y+L E + IS+ H +GT ++ I + N P E+ EE Sbjct: 124 PEMRNDIFDFYALGLGEPLPISSVHGIGTGDVLDAIVE-------NLPHEV------EEE 170 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 +P ++ +++GRPNVGKS+LIN +LG +R++ +G TRD++ Sbjct: 171 NP----------------DVIKFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAID 214 Query: 244 ISW-NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + + + DTAGMRK ++ E+ E+ +V ++M+++ + +++L+A + Sbjct: 215 THFTDTDGQEFTMIDTAGMRKSGKVYENTEKYSVMRAMRAIDRSDVVLMVLNAEEGIREY 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLL----QDLRTKAIKNLPQIGDIYINTISG 358 D RI G +++ +NKWD + + + +D+R + + LP ++++ + Sbjct: 275 DKRIAGFAHEAGKGMIIVVNKWDTLEKDNHTMKKWEEDIREQ-FQYLPYAPIVFVSAL-- 331 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 T + L L + +I++ TRI ++ LN + NP PT + ++ Y TQ+ + Sbjct: 332 -TKQRLHKLPEMIKQISESQNTRIPSAVLNDVIMDAIAINPTPTDKGKRLKIFYATQVAT 390 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 PP+F+IF + SY R+L N++R F G PI + + K Sbjct: 391 KPPTFVIFVNEEELMHFSYLRFLENQIRKAFVFEGTPIHLIARKRK 436 >gi|124025156|ref|YP_001014272.1| GTP-binding protein EngA [Prochlorococcus marinus str. NATL1A] gi|166225837|sp|A2C0J7|DER_PROM1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|123960224|gb|ABM75007.1| GTP-binding protein (HSR1-related) [Prochlorococcus marinus str. NATL1A] Length = 456 Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 135/472 (28%), Positives = 243/472 (51%), Gaps = 38/472 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKSTL NRL + + A+V + PG+TRDR Y F +VDT G+ Sbjct: 6 VAIIGRPNVGKSTLVNRLCQSREAIVHDEPGVTRDRTYQDGFWRDRDFKVVDTGGLVFDD 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 + ++ +Q LA+ EA + L ++D + GIT D +I FLR ++ ++V NK ++ Sbjct: 66 DSEFLPEIREQANLALEEAVVALVIVDGQEGITTADESIAEFLRSRSCKTLVVVNKCESP 125 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 E + L E ISA H +GT +L + +F P+ L+ + ++ Sbjct: 126 EQGLAMAAEFWKLGLGEPYPISAIHGVGTGDLLDQVVNLF----PSKDLDEVSDS----- 176 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 P+++A++GRPNVGKS+L+N + G R + S G TRD++ Sbjct: 177 -------------------PVQLAIIGRPNVGKSSLLNSICGETRAIVSSIRGTTRDTID 217 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + ++ DTAG+R+ + E + +S +++ + ++++DA +QD Sbjct: 218 TRITHQGKEWKLVDTAGIRRRRSVNYGPEFFGINRSFKAIERSDVCVLVIDALDGVTEQD 277 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLL----QDLRTKAIKNLPQIGDIYINTISGR 359 R+ + G A ++ +NKWD V + + +D+R+K + L I+ + ++G+ Sbjct: 278 QRLAGRIEQEGRACLIVINKWDAVEKDSHTMSAMEKDIRSK-LYFLDWAQMIFTSAVTGQ 336 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKT-QLQNPPPTIFNRYNRLKYITQIQS 418 EG+ ++ L +++ + R+TTS +N L + + ++PP T + RL Y TQ+ Sbjct: 337 RVEGI--FALATLAVDQS-RRRVTTSVVNEVLTEALKWRSPPTTRGGKQGRLYYGTQVAI 393 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PPSF +F P E+Y+RY+ ++R G PI++ ++ + ++K Sbjct: 394 NPPSFTLFVNEPKLFGETYRRYIERQIREGLGFEGTPIKLFWRGKQQRDVEK 445 >gi|284045183|ref|YP_003395523.1| ribosome-associated GTPase EngA [Conexibacter woesei DSM 14684] gi|283949404|gb|ADB52148.1| ribosome-associated GTPase EngA [Conexibacter woesei DSM 14684] Length = 484 Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 139/459 (30%), Positives = 234/459 (50%), Gaps = 33/459 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKS+L NRL + + AVV PG+TRDR Q NG F ++DT G+ Sbjct: 3 VAVVGYPNVGKSSLVNRLTQSREAVVHERPGVTRDRKELQTEWNGRRFTLIDTGGVDLED 62 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + + +Q A+ +A L LF++D++AG+ P D + LR+ ++P+I+ +NK+D+ Sbjct: 63 RDEMQRSIQEQARAALADAQLALFVVDAQAGLRPGDEEMADLLRRTHVPVILAANKVDSV 122 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSE-LHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 E Y+L F + V +SA LGT + L V+ ++ + +++ Sbjct: 123 KDVTLAAEFYALGFGDPVAVSAAQGLGTGDLLDRVVSRLPDESEVEEDEDLV-------- 174 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 R+A++GRPNVGKS+L+N++LG +R++ +G TRD++ Sbjct: 175 ---------------------RLALIGRPNVGKSSLVNKMLGSDRVIVSEVAGTTRDAID 213 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + + +++ + + DTAGMR+ +++ +S+E T +S ++ + +V+ DA QD Sbjct: 214 LPFRFEDRRLILVDTAGMRRQAKVGDSIEYYTALRSRRAAERADVALVVCDAQEGVTSQD 273 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVS--DKLNLLQDLRTKAIKNLPQIGDIYINTISGRTG 361 LRI + +G A L LNKWD+ D+ D + N ++ + T S +TG Sbjct: 274 LRIAELAMQSGCATALVLNKWDLTGGEDEPEFDLDHERARVNNKLRLRPRVLTT-SAKTG 332 Query: 362 EGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 + L+ + R+ T LN +L Q PP N +L Y+TQ PP Sbjct: 333 RHIHRLLTEAFALADRTSGRVPTPQLNRFLSDIQEIRQPPAKQNHRLKLIYMTQTAERPP 392 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCF 460 F I N++ Y ++ NRLR + GIP+ + F Sbjct: 393 RFSIQVNSRNRVTRDYAYFIENRLRERYRFEGIPLIIDF 431 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 36/126 (28%), Positives = 63/126 (50%), Gaps = 2/126 (1%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 +++AVVG PNVGKS+L+NRL + + G+TRD + W + DT G+ Sbjct: 1 MKVAVVGYPNVGKSSLVNRLTQSREAVVHERPGVTRDRKELQTEWNGRRFTLIDTGGVDL 60 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 R + +++ +++ ++ + + ++DA D + D + T V+LA NK Sbjct: 61 EDR--DEMQRSIQEQARAALADAQLALFVVDAQAGLRPGDEEMADLLRRTHVPVILAANK 118 Query: 324 WDMVSD 329 D V D Sbjct: 119 VDSVKD 124 >gi|94986558|ref|YP_594491.1| GTP-binding protein EngA [Lawsonia intracellularis PHE/MN1-00] gi|166225821|sp|Q1MS56|DER_LAWIP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|94730807|emb|CAJ54169.1| predicted GTPases [Lawsonia intracellularis PHE/MN1-00] Length = 453 Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 150/475 (31%), Positives = 245/475 (51%), Gaps = 40/475 (8%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQA-IINGVIFNIVDTAG 59 M+ IA+VG PNVGKSTLFNRL++K A+ + PG+TRDR+ G I F ++DT G Sbjct: 1 MLPKIALVGRPNVGKSTLFNRLIRKNRAITHDRPGVTRDRMEGLVQSIGHPSFILIDTGG 60 Query: 60 -IADGKNCSI---------AKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRK 109 I D +I K + Q +LAI E+ I +++++ G+ P+D + FLRK Sbjct: 61 VILDSHYSTINIIDELHGFEKDIFQQVQLAIEESQAICLIVNARDGLLPFDEHLALFLRK 120 Query: 110 KNIPIIIVSNKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPN 169 PI++ NK+D + + + ++ +SAEH Sbjct: 121 TGKPILLAVNKVDGIEKEDQIVAEFHILGLPMIAVSAEH--------------------G 160 Query: 170 HPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRL 229 H + +EN ENI + + L++A++GRPN GKS++IN ++G N+L Sbjct: 161 HNIRQLENELSLLLPNNENIKDQSTAQAA-----LKLAIIGRPNAGKSSIINAIIGKNKL 215 Query: 230 LTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETT 289 + + +G TRDS+ I + + DTAG+R+ ++IT+ +E+ +V S++S T Sbjct: 216 IVSNIAGTTRDSIDIPFIFNKTQYLFVDTAGIRRRTKITDPVERFSVNASIKSATKANIT 275 Query: 290 IVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIG 349 + ++DAT QD R++D + +L +NK D+++ K + L +K+ K Q Sbjct: 276 LYVIDATEGITAQDKRLLDLLDTRKIPFILLINKTDLIAKK---QKTLLSKSFKEELQFC 332 Query: 350 -DIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYN 408 I I +S T GLD ++ ++ TRI T LN +++ ++ PP + Sbjct: 333 PHIPILMVSAVTSSGLDQIIAMAEQVYLECSTRINTGVLNRAMEEIITRHQPPVVRRIRP 392 Query: 409 RLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSS 463 + Y+TQ ++SPP+F+ F KI E+Y RYL LR F+L PIR+ +SS Sbjct: 393 KFFYLTQAETSPPTFVFFVNDAEKISETYVRYLERSLRKIFNLHHAPIRIRLRSS 447 >gi|15672737|ref|NP_266911.1| GTP-binding protein EngA [Lactococcus lactis subsp. lactis Il1403] gi|26006736|sp|Q9CHH6|DER_LACLA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|12723672|gb|AAK04853.1|AE006309_2 GTP-binding protein [Lactococcus lactis subsp. lactis Il1403] gi|326406306|gb|ADZ63377.1| GTP-binding protein [Lactococcus lactis subsp. lactis CV56] Length = 436 Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 140/466 (30%), Positives = 248/466 (53%), Gaps = 39/466 (8%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AIVG PNVGKST+FNR+ +++++V + PG+TRDR+Y FNI+DT GI + Sbjct: 5 TVAIVGRPNVGKSTIFNRIAGERISIVEDIPGVTRDRIYATGEWLTRKFNIIDTGGI-EL 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + ++ Q E+A+ EA +I+ ++D + GIT D A+ + L + + P+I+V NK+D Sbjct: 64 SDEPFMTEIRAQAEIAMTEADVIIAVVDGETGITDADEAVANILYRTDKPVILVVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + ++ YSL + +SA H +GT ++ I + N P Sbjct: 124 PERRMEIFDFYSLGLGDPYPVSAVHGIGTGDVLDAIVQ-------NLP------------ 164 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 + ++ +++GRPNVGKS+LIN +LG +R++ +G TRD++ Sbjct: 165 ----------NEIEEENENVIKFSLIGRPNVGKSSLINAILGEDRVIASPIAGTTRDAID 214 Query: 244 ISW-NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + + ++ + DTAGMRK +I E+ E+ +V ++M+++ + +++++A + Sbjct: 215 THFVDSEDQEFVMIDTAGMRKSGKIYENTEKYSVMRAMRAIDRSDIVLMVINAEEGIREY 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMV---SDKL-NLLQDLRTKAIKNLPQIGDIYINTISG 358 D+RI G +++ +NKWD + +D + N ++RTK K L +Y +S Sbjct: 275 DMRIAGFAHEAGKGILIVVNKWDTLEKDNDTMKNFELEIRTK-FKFLDYAPIVY---VSA 330 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 +TG+ L+ L + EI+ RI++S LN + NP PT + ++ Y TQ+ Sbjct: 331 KTGQRLNKLPDMIKEIHHAQNLRISSSVLNDVIMDAVAINPTPTDKGKRLKIFYATQVAI 390 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 PP+F++F + SY R+L N++R F G P+ + + K Sbjct: 391 KPPTFVVFVNEEELMHFSYLRFLENQIRKAFVFEGTPVHLIARKRK 436 >gi|281491251|ref|YP_003353231.1| GTP-binding protein [Lactococcus lactis subsp. lactis KF147] gi|281374992|gb|ADA64510.1| GTP-binding protein [Lactococcus lactis subsp. lactis KF147] Length = 436 Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 140/466 (30%), Positives = 248/466 (53%), Gaps = 39/466 (8%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AIVG PNVGKST+FNR+ +++++V + PG+TRDR+Y FNI+DT GI + Sbjct: 5 TVAIVGRPNVGKSTIFNRIAGERISIVEDIPGVTRDRIYATGEWLTRKFNIIDTGGI-EL 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + ++ Q E+A+ EA +I+ ++D + GIT D A+ + L + + P+I+V NK+D Sbjct: 64 SDEPFMTEIRAQAEIAMTEADVIITVVDGETGITDADEAVANILYRTDKPVILVVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + ++ YSL + +SA H +GT ++ I + N P Sbjct: 124 PERRMEIFDFYSLGLGDPYPVSAVHGIGTGDVLDAIVQ-------NLP------------ 164 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 + ++ +++GRPNVGKS+LIN +LG +R++ +G TRD++ Sbjct: 165 ----------NEIEEENENVIKFSLIGRPNVGKSSLINAILGEDRVIASPIAGTTRDAID 214 Query: 244 ISW-NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + + ++ + DTAGMRK +I E+ E+ +V ++M+++ + +++++A + Sbjct: 215 THFVDSEDQEFVMIDTAGMRKSGKIYENTEKYSVMRAMRAIDRSDIVLMVINAEEGIREY 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMV---SDKL-NLLQDLRTKAIKNLPQIGDIYINTISG 358 D+RI G +++ +NKWD + +D + N ++RTK K L +Y +S Sbjct: 275 DMRIAGFAHEAGKGILIVVNKWDTLEKDNDTMKNFELEIRTK-FKFLDYAPIVY---VSA 330 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 +TG+ L+ L + EI+ RI++S LN + NP PT + ++ Y TQ+ Sbjct: 331 KTGQRLNKLPDMIKEIHHAQNLRISSSVLNDVIMDAVAINPTPTDKGKRLKIFYATQVAI 390 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 PP+F++F + SY R+L N++R F G P+ + + K Sbjct: 391 KPPTFVVFVNEEELMHFSYLRFLENQIRKAFVFEGTPVHLIARKRK 436 >gi|312277722|gb|ADQ62379.1| GTP-binding protein engA [Streptococcus thermophilus ND03] Length = 436 Score = 228 bits (582), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 136/462 (29%), Positives = 241/462 (52%), Gaps = 31/462 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AIVG PNVGKSTLFNR+ +++++V + G+TRDR+Y A F+++DT GI D Sbjct: 5 TVAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTSAEWLNRQFSLIDTGGI-DD 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + +Q+ Q +A+ EA +I+F++ K G+T D + L K N P+I+ NK+D Sbjct: 64 VDAPFMEQIKHQAGIAMTEADVIVFVVSGKEGVTDADEYVARILYKTNKPVILAVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + Y+ YSL + +S+ H +GT ++ I + N P E+ EE Sbjct: 124 PEMRADIYDFYSLGLGDPYPVSSVHGIGTGDVLDAIVE-------NLPTEV------EEE 170 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 +P +R +++GRPNVGKS+LIN +LG +R++ +G TRD++ Sbjct: 171 NP----------------DIIRFSLIGRPNVGKSSLINAILGEDRVIASPIAGTTRDAID 214 Query: 244 ISW-NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 ++ + + + DTAGMRK ++ E+ E+ ++ +SM+++ + +++++A + Sbjct: 215 TNFVDSEGQEYTMIDTAGMRKSGKVYENTEKYSIMRSMRAIDRSDVVLMVINAEEGIREY 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D RI G +++ +NKWD + + + + + I +S +T + Sbjct: 275 DKRIAGFAHEAGKGIIIVVNKWDTIKKDNHTVANWEADIRDQFQFLSYAPIVFVSAKTKQ 334 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 L+ L + I++ RI+++ LN + NP PT + ++ Y TQ+ PP+ Sbjct: 335 RLNKLPEMIKRISESQNRRISSAVLNDVIMDAIAINPTPTDKGKRLKIFYGTQVSVKPPT 394 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 F+IF + SY R+L N++R F G PI + + K Sbjct: 395 FVIFVNEEELMHFSYMRFLENQIRQAFGFEGTPIHLIARKRK 436 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/130 (30%), Positives = 67/130 (51%), Gaps = 13/130 (10%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIIN-GVIFNIVDTAGI 60 I +++G PNVGKS+L N ++ + + G TRD + + + G + ++DTAG+ Sbjct: 174 IIRFSLIGRPNVGKSSLINAILGEDRVIASPIAGTTRDAIDTNFVDSEGQEYTMIDTAGM 233 Query: 61 -------ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIP 113 + + SI + M AI+ + ++L +I+++ GI YD I F + Sbjct: 234 RKSGKVYENTEKYSIMRSMR-----AIDRSDVVLMVINAEEGIREYDKRIAGFAHEAGKG 288 Query: 114 IIIVSNKMDT 123 IIIV NK DT Sbjct: 289 IIIVVNKWDT 298 >gi|22537760|ref|NP_688611.1| GTP-binding protein EngA [Streptococcus agalactiae 2603V/R] gi|76788647|ref|YP_330237.1| GTP-binding protein EngA [Streptococcus agalactiae A909] gi|76798461|ref|ZP_00780699.1| GTP-binding protein engA [Streptococcus agalactiae 18RS21] gi|77408494|ref|ZP_00785232.1| GTP-binding protein, Era/ThdF family [Streptococcus agalactiae COH1] gi|77411928|ref|ZP_00788259.1| GTP-binding protein, Era/ThdF family [Streptococcus agalactiae CJB111] gi|41017044|sp|Q8DY73|DER_STRA5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|123601399|sp|Q3JZR6|DER_STRA1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|22534651|gb|AAN00484.1|AE014265_13 phosphoglycerate dehydrogenase-related protein [Streptococcus agalactiae 2603V/R] gi|76563704|gb|ABA46288.1| GTP-binding protein EngA, putative [Streptococcus agalactiae A909] gi|76586195|gb|EAO62715.1| GTP-binding protein engA [Streptococcus agalactiae 18RS21] gi|77162025|gb|EAO73005.1| GTP-binding protein, Era/ThdF family [Streptococcus agalactiae CJB111] gi|77172936|gb|EAO76067.1| GTP-binding protein, Era/ThdF family [Streptococcus agalactiae COH1] Length = 436 Score = 228 bits (582), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 137/462 (29%), Positives = 241/462 (52%), Gaps = 31/462 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AIVG PNVGKSTLFNR+ +++++V + G+TRDR+Y F+++DT GI D Sbjct: 5 TVAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTTGEWLNRKFSLIDTGGI-DD 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + +Q+ Q ++A+ EA +I+F++ K G+T D ++ L K N P+I+ NK+D Sbjct: 64 VDAPFMEQIKHQADIAMTEADVIVFVVSGKEGVTDADEYVSRILYKTNKPVILAVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + Y+ YSL + +S+ H +GT ++ I + N P+E EE Sbjct: 124 PEMRNDIYDFYSLGLGDPYPLSSVHGIGTGDILDAIVE-------NLPVE--------EE 168 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 + +I +R +++GRPNVGKS+LIN +LG +R++ +G TRD++ Sbjct: 169 NENPDI--------------IRFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAID 214 Query: 244 ISW-NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 ++ + + + DTAGMRK ++ E+ E+ +V +SM+++ + +++++A + Sbjct: 215 TNFVDSQGQEYTMIDTAGMRKSGKVYENTEKYSVMRSMRAIDRSDVVLMVINAEEGIREY 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D RI TG +++ +NKWD + + + N + I +S T + Sbjct: 275 DKRIAGFAHETGKGIIIVVNKWDTIEKDNHTVSQWEADIRDNFQFLSYAPIIFVSAETKQ 334 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 L L + I++ RI ++ LN + NP PT + ++ Y TQ+ PP+ Sbjct: 335 RLHKLPDMIKRISESQNKRIPSAVLNDVIMDAIAINPTPTDKGKRLKIFYATQVAVKPPT 394 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 F++F + SY R+L N++R F G PI + + K Sbjct: 395 FVVFVNEEELMHFSYLRFLENQIREAFVFEGTPINLIARKRK 436 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 39/130 (30%), Positives = 67/130 (51%), Gaps = 13/130 (10%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIIN-GVIFNIVDTAGI 60 I +++G PNVGKS+L N ++ + + G TRD + + + G + ++DTAG+ Sbjct: 174 IIRFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTNFVDSQGQEYTMIDTAGM 233 Query: 61 -------ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIP 113 + + S+ + M AI+ + ++L +I+++ GI YD I F + Sbjct: 234 RKSGKVYENTEKYSVMRSMR-----AIDRSDVVLMVINAEEGIREYDKRIAGFAHETGKG 288 Query: 114 IIIVSNKMDT 123 IIIV NK DT Sbjct: 289 IIIVVNKWDT 298 >gi|302550423|ref|ZP_07302765.1| ribosome-associated GTPase EngA [Streptomyces viridochromogenes DSM 40736] gi|302468041|gb|EFL31134.1| ribosome-associated GTPase EngA [Streptomyces viridochromogenes DSM 40736] Length = 498 Score = 228 bits (582), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 146/478 (30%), Positives = 241/478 (50%), Gaps = 53/478 (11%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD-- 62 +A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ +A G F +VDT G Sbjct: 61 LAVVGRPNVGKSTLVNRIIGRREAVVEDKPGVTRDRVTYEAEWAGRRFKVVDTGGWEQDV 120 Query: 63 -GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 G + S+A Q E AI+ A ++F++D+K G T D A+ LRK P+++ +NK+ Sbjct: 121 LGIDASVAA----QAEYAIDAADAVVFVVDAKVGATDTDEAVVRLLRKAGKPVVLCANKV 176 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D + + + ++SL E +SA H GT ++ + ++ Sbjct: 177 DGQSGEADATYLWSLGLGEPYPVSALHGRGTGDMLDQVLEVLP----------------- 219 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 E+P+E I P RIA++GRPNVGKS+L+N++ R++ +G TRD Sbjct: 220 -EAPRETFGG------GGIGGPRRIALIGRPNVGKSSLLNKVANEERVVVNELAGTTRDP 272 Query: 242 V-------SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLD 294 V ++W + DTAG+RK + + + ++ +V E ++L+D Sbjct: 273 VDELIELGGVTWKF-------VDTAGIRKRVHLQQGADYYASLRTAAAVEKAEVAVILID 325 Query: 295 ATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSD--KLNLLQDLRTKAIKNLPQIGDIY 352 A+ QD RIV G A+VLA NKWD + + + L +++ T+ L Q+ Sbjct: 326 ASESISVQDQRIVTMAVEAGRAIVLAYNKWDTLDEERRYYLEREIETE----LGQVTWAP 381 Query: 353 INTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKY 412 +S RTG ++ L+ ++ W+TR+ T LN++L + +P P + R+ + Sbjct: 382 RVNVSARTGRHMEKLVPAIETALAGWETRVPTGRLNAFLGELVAAHPHPVRGGKQPRILF 441 Query: 413 ITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 TQ + PP F++F + I Y+R++ RLR F G PI + + + KK Sbjct: 442 GTQAGTKPPRFVLFAS--GFIEAGYRRFIERRLREEFGFEGTPIHISVRVREKRGAKK 497 >gi|325068743|ref|ZP_08127416.1| GTP-binding protein Der [Actinomyces oris K20] Length = 533 Score = 228 bits (582), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 140/460 (30%), Positives = 232/460 (50%), Gaps = 36/460 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI---A 61 +A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ A G F IVDT G Sbjct: 99 LAVVGRPNVGKSTLVNRVLGRREAVVQDTPGVTRDRVSYPAEWAGRRFTIVDTGGWEVDV 158 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 G + ++A Q E+A+ A +L ++D++ GIT D + LR+ P+++ +NK+ Sbjct: 159 AGLDAAVAT----QAEIAVEMADAVLLVVDAQVGITETDARVVRMLRRSGKPVVLAANKV 214 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D+ + + +++L E +SA H G+ E+ + ++ Sbjct: 215 DSPAQEGDAATLWNLGLGEPFPVSALHGRGSGEVLDAVMEVLP----------------- 257 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 E S EG RIA+VGRPNVGKS+L+N + G R++ +G TRD Sbjct: 258 EVSAVATAAPEGDLH--------RIALVGRPNVGKSSLLNSIAGRERVVVNETAGTTRDP 309 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 V DTAG+R+ + + + V ++ ++ E +VLLDA+ P + Sbjct: 310 VDEIIELDGRQWVFVDTAGIRRRVKQSRGADYYAVLRTQGAIDKAEVAVVLLDASEPISE 369 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTG 361 QD+R+V + G A+VL NKWD+V ++ + L + +L + ++ RTG Sbjct: 370 QDVRVVQQAVDAGRALVLVNNKWDLVDEERQKM--LLWEVEHDLAHVSWAPHINLAARTG 427 Query: 362 EGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 + L+ ++ + W TR+ T LN +L + Q P P + R+ + TQ+Q +PP Sbjct: 428 WHTNRLVRALDAALEGWTTRVPTGRLNGFLGQLQSATPHPVRGGKQPRILFATQVQVAPP 487 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 +IF T + Y+R++ RLR F +G PI++ + Sbjct: 488 RIVIFTT--GFLDAGYRRFIERRLREEFGFTGTPIQIGVR 525 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 72/151 (47%), Gaps = 12/151 (7%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 ++ IA+VG PNVGKS+L N + ++ VV G TRD + ++G + VDTAGI Sbjct: 271 LHRIALVGRPNVGKSSLLNSIAGRERVVVNETAGTTRDPVDEIIELDGRQWVFVDTAGIR 330 Query: 62 DGKNCSIAKQMND--QTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 S +T+ AI++A + + L+D+ I+ D + +++V+N Sbjct: 331 RRVKQSRGADYYAVLRTQGAIDKAEVAVVLLDASEPISEQDVRVVQQAVDAGRALVLVNN 390 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDL 150 K D +R ++ + EHDL Sbjct: 391 KWDLVDEERQKMLLWEV----------EHDL 411 >gi|312866411|ref|ZP_07726629.1| ribosome biogenesis GTPase Der [Streptococcus downei F0415] gi|311098105|gb|EFQ56331.1| ribosome biogenesis GTPase Der [Streptococcus downei F0415] Length = 436 Score = 228 bits (582), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 135/462 (29%), Positives = 238/462 (51%), Gaps = 31/462 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AIVG PNVGKSTLFNR+ +++++V + G+TRDR+Y +A F+++DT GI D Sbjct: 5 TVAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTKAEWLNRQFSLIDTGGI-DD 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + +Q+ Q ++A+ E+ +I+F++ K G+T D + L + + P+I+ NK+D Sbjct: 64 VDAPFMEQIKHQADIAMTESDVIVFVVSGKEGVTDADEYVAKILYRTHKPVILAVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + Y+ Y+L + +S+ H +GT ++ I +EN + E+ Sbjct: 124 PEMRNDIYDFYALGLGDPYPVSSTHGIGTGDVLDAI---------------VENLPKQED 168 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 +I ++ +++GRPNVGKS+LIN LLG +R++ +G TRD++ Sbjct: 169 DDNPDI--------------IKFSLIGRPNVGKSSLINALLGEDRVIASPVAGTTRDAID 214 Query: 244 ISW-NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + + + + DTAGMRK ++ E+ E+ ++ +SM+++ + +++++A Sbjct: 215 TDFVDEEGQEYTMIDTAGMRKSGKVYENTEKYSIMRSMRAIDRSDVVLMVINAEEGIRDY 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D RI G +V+ +NKWD + + N + I +S +T + Sbjct: 275 DKRIAGFAHEAGKGIVIVVNKWDTIKKDNHTTSKWEEDIRDNFQFLSYAPIVFVSAQTKQ 334 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 L L + I++ TRI +S LN + NP PT R ++ Y TQ+ PP+ Sbjct: 335 RLHKLPELIKRISQSQNTRIPSSVLNDVIMDAVAINPTPTDKGRRLKIFYATQVAVKPPT 394 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 F+IF + SY R+L N++R F G PI + + K Sbjct: 395 FVIFVNEEELMHFSYLRFLENQIREAFVFEGTPIHLIARKRK 436 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/130 (30%), Positives = 66/130 (50%), Gaps = 13/130 (10%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAII-NGVIFNIVDTAGI 60 I +++G PNVGKS+L N L+ + + G TRD + + G + ++DTAG+ Sbjct: 174 IIKFSLIGRPNVGKSSLINALLGEDRVIASPVAGTTRDAIDTDFVDEEGQEYTMIDTAGM 233 Query: 61 -------ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIP 113 + + SI + M AI+ + ++L +I+++ GI YD I F + Sbjct: 234 RKSGKVYENTEKYSIMRSMR-----AIDRSDVVLMVINAEEGIRDYDKRIAGFAHEAGKG 288 Query: 114 IIIVSNKMDT 123 I+IV NK DT Sbjct: 289 IVIVVNKWDT 298 >gi|306824736|ref|ZP_07458080.1| ribosome-associated GTPase EngA [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432947|gb|EFM35919.1| ribosome-associated GTPase EngA [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 436 Score = 228 bits (582), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 140/466 (30%), Positives = 247/466 (53%), Gaps = 39/466 (8%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAIVG PNVGKSTLFNR+ +++++V + G+TRDR+Y F+++DT GI D Sbjct: 5 TIAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRSFSMIDTGGI-DD 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + +Q+ Q E+A+ EA +I+F++ K GIT D + L K + P+I+ NK+D Sbjct: 64 VDAPFMEQIKHQAEIAMEEADVIVFVVSGKEGITDADEYVARKLYKTHKPVILAVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + ++ Y+L E + IS+ H +GT ++ I + N P E+ EE Sbjct: 124 PEMRNDIFDFYALGLGEPLPISSVHGIGTGDVLDAIVE-------NLPHEV------EEE 170 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 +P ++ +++GRPNVGKS+LIN +LG +R++ +G TRD++ Sbjct: 171 NP----------------DVIKFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAID 214 Query: 244 ISW-NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + + + DTAGMRK ++ E+ E+ +V ++M+++ + +++L+A + Sbjct: 215 THFTDTDGQEFTMIDTAGMRKSGKVYENTEKYSVMRAMRAIDRSDVVLMVLNAEEGIREY 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLL----QDLRTKAIKNLPQIGDIYINTISG 358 D RI G +++ +NKWD + + + +D+R + + LP ++++ + Sbjct: 275 DKRIAGFAHEAGKGMIIVVNKWDTLEKDNHTMKKWEEDIREQ-FQYLPYAPIVFVSAL-- 331 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 T + L L + I++ TRI ++ LN + NP PT + ++ Y TQ+ + Sbjct: 332 -TKQRLHKLPEMIKRISESQNTRIPSAVLNDVIMDAIAINPTPTDKGKRLKIFYATQVAT 390 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 PP+F+IF + SY R+L N++R F G PI + + K Sbjct: 391 KPPTFVIFVNEEELMHFSYLRFLENQIRKAFVFEGTPIHLIARKRK 436 >gi|47459318|ref|YP_016180.1| GTP-binding protein EngA [Mycoplasma mobile 163K] gi|47458648|gb|AAT27969.1| predicted GTPase protein [Mycoplasma mobile 163K] Length = 432 Score = 228 bits (582), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 145/459 (31%), Positives = 237/459 (51%), Gaps = 35/459 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKST+FNR++ K+ AVV + PG+TRDRLY +A +G F +VDT GI + Sbjct: 5 IAIVGKPNVGKSTIFNRIIGKRQAVVADIPGVTRDRLYEKATWDGKTFEVVDTGGIQ-IE 63 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + KQ+ Q +AI EA +I+F+++ ++ ++ D+ I LRK N I V+NK++ Sbjct: 64 DVPFQKQIKIQAMIAIEEADVIIFVVEGRSELSKDDYLIVDILRKSNKQIFFVANKLEDN 123 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + +Y L F +I +ISA H G +L K F Sbjct: 124 --HEFDHSLYKLGFDKIFKISALHGEGIGDLLEACTKTF--------------------- 160 Query: 185 PK-ENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 PK ENI K +IA++G+PN GKS+L+N +L R + G T D +S Sbjct: 161 PKDENIE----------DKDFKIAIIGKPNAGKSSLLNTILDEERSIVSPIPGTTHDPIS 210 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 S+ +K+ ++I DTAG+ K SR+ + ++ + ++ +++ +++LDA++ D Sbjct: 211 ESFYYKDEKLKIIDTAGIIKKSRMADDIDFYILNRAFKTIEESNLVLLILDASLGSTHFD 270 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 I + F +++ +NKWD++ +++ K + I IS G Sbjct: 271 ATIAGTSFEQNKPIIIVVNKWDLIEKNEKTMEEFTKKIRAQFHFLFWAPIVFISALEGLR 330 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 ++ L+ VL + + + + LN L +TQ P PT ++KYI QI+ + P+F Sbjct: 331 INTLLDKVLLVKANSERVLNNNVLNDILLQTQAIQPAPTHKGGKLQIKYIRQIKGNTPTF 390 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 L F + SY R++ N+LR +FS G+PI F+ Sbjct: 391 LFFVNNKRFLHFSYLRFIQNQLRQHFSFEGVPIVTLFRD 429 Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 42/124 (33%), Positives = 67/124 (54%), Gaps = 6/124 (4%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + IAI+G PN GKS+L N ++ ++ ++V PG T D + I+DTAGI Sbjct: 171 FKIAIIGKPNAGKSSLLNTILDEERSIVSPIPGTTHDPISESFYYKDEKLKIIDTAGII- 229 Query: 63 GKNCSIAKQMN----DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVS 118 K +A ++ ++ I E++L+L ++D+ G T +D I ++N PIIIV Sbjct: 230 -KKSRMADDIDFYILNRAFKTIEESNLVLLILDASLGSTHFDATIAGTSFEQNKPIIIVV 288 Query: 119 NKMD 122 NK D Sbjct: 289 NKWD 292 >gi|212550485|ref|YP_002308802.1| GTP-binding protein EngA [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|229710725|sp|B6YQB9|DER_AZOPC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|212548723|dbj|BAG83391.1| GTP-binding protein EngA [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 437 Score = 228 bits (582), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 147/456 (32%), Positives = 233/456 (51%), Gaps = 30/456 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNRL + A+V G TRDR Y + G IF+I+DT G Sbjct: 5 VAIVGRPNVGKSTLFNRLTQSHQAIVDEEEGTTRDRQYSKVEWCGQIFSIIDTGGWVLNS 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +++N Q ++AI EA +ILFL+D G T D I + LR++ +I+VSNK D Sbjct: 65 DDIFEEEINKQVQIAIEEADIILFLVDVIHGTTDLDQQIAALLRREKKLVILVSNKADNY 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 E Y+L + +SA + GT EL + F +K N P Sbjct: 125 KLYAQSAEFYALGLGDPYNVSAINGSGTGELLDYLISNFTKKVDNKP------------- 171 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 I+ P IA+VG+PNVGKS+LIN L R + + +G TRDS+ Sbjct: 172 --------------EITIP-AIAIVGKPNVGKSSLINALTNEERNIVTNIAGTTRDSIYT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 ++ + DTAG+ K ++ E+ E ++ ++++S+ + + I+L+DAT QD+ Sbjct: 217 LYDKFGLKFYLVDTAGICKKKKVEENSEYYSIIRAIRSIESSDICILLIDATQCIMAQDI 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDK-LNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 I + +++ +NKWD++ +K + + D+ I S +T + Sbjct: 277 NIFSIIQKNEKGLIIVVNKWDLIQNKNPKTIYTFENAIRQRTAPFTDVPIIFSSAQTKKR 336 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS-PPS 422 + ++ E+ + + +I TS LN L + PPP + R+KY+TQ+ ++ PS Sbjct: 337 IYKILQVAKEVYDIRQIKIPTSQLNRILLPIIAKTPPPINKGKVVRIKYVTQLTNTIIPS 396 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 F+ FC P I YKR+L N++R N+ L+G PI + Sbjct: 397 FVFFCNLPKWIKTPYKRFLENQMRKNWKLTGTPINI 432 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 52/143 (36%), Positives = 72/143 (50%), Gaps = 13/143 (9%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 I IAIVG PNVGKS+L N L ++ +V N G TRD +Y G+ F +VDTAGI Sbjct: 175 IPAIAIVGKPNVGKSSLINALTNEERNIVTNIAGTTRDSIYTLYDKFGLKFYLVDTAGIC 234 Query: 62 DGKNC-------SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPI 114 K SI + + +I + + + LID+ I D I S ++K + Sbjct: 235 KKKKVEENSEYYSIIRAIR-----SIESSDICILLIDATQCIMAQDINIFSIIQKNEKGL 289 Query: 115 IIVSNKMDTRIAQRNFYEIYSLD 137 IIV NK D I +N IY+ + Sbjct: 290 IIVVNKWDL-IQNKNPKTIYTFE 311 >gi|326773386|ref|ZP_08232669.1| ribosome-associated GTPase EngA [Actinomyces viscosus C505] gi|326636616|gb|EGE37519.1| ribosome-associated GTPase EngA [Actinomyces viscosus C505] Length = 719 Score = 228 bits (582), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 142/461 (30%), Positives = 235/461 (50%), Gaps = 38/461 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI---A 61 +A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ A G F IVDT G Sbjct: 285 LAVVGRPNVGKSTLVNRVLGRREAVVQDTPGVTRDRVSYPAEWAGRRFTIVDTGGWEVDV 344 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 G + ++A Q E+A+ A +L ++D++ GIT D + LR+ P+++ +NK+ Sbjct: 345 AGLDAAVAT----QAEVAVEMADAVLLVVDAQVGITETDARVVRMLRRSGKPVVLAANKV 400 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D+ + + +++L E +SA H G+ E+ + ++ Sbjct: 401 DSPAQEGDAATLWNLGLGEPFPVSALHGRGSGEVLDAVMEVLP----------------- 443 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 E S EG RIA+VGRPNVGKS+L+N + G R++ +G TRD Sbjct: 444 EVSAVATAAPEGDLH--------RIALVGRPNVGKSSLLNSIAGQERVVVNETAGTTRDP 495 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 V DTAG+R+ + + + V ++ ++ E +VLLDA+ P + Sbjct: 496 VDEIIELDGRQWVFVDTAGIRRRVKQSRGADYYAVLRTQGAIDKAEVAVVLLDASEPISE 555 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIG-DIYINTISGRT 360 QD+R+V + G A+VL NKWD+V ++ + L + +L + +IN ++ RT Sbjct: 556 QDVRVVQQAVDAGRALVLVNNKWDLVDEERQKM--LLWEVEHDLAHVSWAPHIN-LAART 612 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G + L+ ++ + W TR+ T LN +L + Q P P + R+ + TQ+Q +P Sbjct: 613 GWHTNRLVRALDAALEGWTTRVPTGRLNGFLGQLQSATPHPVRGGKQPRILFATQVQVAP 672 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 P +IF T + Y+R++ RLR F +G PI++ + Sbjct: 673 PRIVIFTT--GFLDAGYRRFIERRLREEFGFTGTPIQIGVR 711 Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 72/151 (47%), Gaps = 12/151 (7%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 ++ IA+VG PNVGKS+L N + ++ VV G TRD + ++G + VDTAGI Sbjct: 457 LHRIALVGRPNVGKSSLLNSIAGQERVVVNETAGTTRDPVDEIIELDGRQWVFVDTAGIR 516 Query: 62 DGKNCSIAKQMND--QTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 S +T+ AI++A + + L+D+ I+ D + +++V+N Sbjct: 517 RRVKQSRGADYYAVLRTQGAIDKAEVAVVLLDASEPISEQDVRVVQQAVDAGRALVLVNN 576 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDL 150 K D +R ++ + EHDL Sbjct: 577 KWDLVDEERQKMLLWEV----------EHDL 597 >gi|312862558|ref|ZP_07722800.1| ribosome biogenesis GTPase Der [Streptococcus vestibularis F0396] gi|322517433|ref|ZP_08070306.1| ribosome-associated GTPase EngA [Streptococcus vestibularis ATCC 49124] gi|311101963|gb|EFQ60164.1| ribosome biogenesis GTPase Der [Streptococcus vestibularis F0396] gi|322123915|gb|EFX95474.1| ribosome-associated GTPase EngA [Streptococcus vestibularis ATCC 49124] Length = 436 Score = 228 bits (581), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 136/462 (29%), Positives = 240/462 (51%), Gaps = 31/462 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AIVG PNVGKSTLFNR+ +++++V + G+TRDR+Y A F+++DT GI D Sbjct: 5 TVAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTSAEWLNRQFSLIDTGGI-DD 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + +Q+ Q ++A+ EA +I+F++ K G+T D + L K N P+I+ NK+D Sbjct: 64 VDAPFMEQIKHQADIAMTEADVIVFVVSGKEGVTDADEYVARILYKTNKPVILAVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + Y+ YSL + +S+ H +GT ++ I + N P E+ EE Sbjct: 124 PEMRADIYDFYSLGLGDPYPVSSVHGIGTGDVLDAIVE-------NLPTEV------EEE 170 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 +P +R +++GRPNVGKS+LIN +LG +R++ +G TRD++ Sbjct: 171 NP----------------DIIRFSLIGRPNVGKSSLINAILGEDRVIASPIAGTTRDAID 214 Query: 244 ISW-NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 ++ + + DTAGMRK ++ E+ E+ +V +SM+++ + +++++A + Sbjct: 215 TNFVDSDGQEYTMIDTAGMRKSGKVYENTEKYSVMRSMRAIDRSDIVLMVINAEEGIREY 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D RI G +++ +NKWD + + + + + I +S T + Sbjct: 275 DKRIAGFAHEAGKGIIIVVNKWDTIKKDNHTVSNWEADIRDQFQFLSYAPIIFVSAETKQ 334 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 L+ L + I++ RI+++ LN + NP PT + ++ Y TQ+ PP+ Sbjct: 335 RLNKLPEMIKRISESQNRRISSAVLNDVIMDAIAINPTPTDKGKRLKIFYGTQVSVKPPT 394 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 F++F + SY R+L N++R F G PI + + K Sbjct: 395 FVVFVNEEELMHFSYMRFLENQIRQAFGFEGTPIHLIARKRK 436 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/130 (30%), Positives = 67/130 (51%), Gaps = 13/130 (10%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAI-INGVIFNIVDTAGI 60 I +++G PNVGKS+L N ++ + + G TRD + + +G + ++DTAG+ Sbjct: 174 IIRFSLIGRPNVGKSSLINAILGEDRVIASPIAGTTRDAIDTNFVDSDGQEYTMIDTAGM 233 Query: 61 -------ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIP 113 + + S+ + M AI+ + ++L +I+++ GI YD I F + Sbjct: 234 RKSGKVYENTEKYSVMRSMR-----AIDRSDIVLMVINAEEGIREYDKRIAGFAHEAGKG 288 Query: 114 IIIVSNKMDT 123 IIIV NK DT Sbjct: 289 IIIVVNKWDT 298 >gi|328949043|ref|YP_004366380.1| GTP-binding protein engA [Treponema succinifaciens DSM 2489] gi|328449367|gb|AEB15083.1| GTP-binding protein engA [Treponema succinifaciens DSM 2489] Length = 517 Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 146/469 (31%), Positives = 243/469 (51%), Gaps = 33/469 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 I I G PNVGKSTLFN L K A+ PG+TRD + G ++G+ +++DT G + Sbjct: 65 IVIAGRPNVGKSTLFNALTHTKRAITDPTPGVTRDPVEGTCFLSGLPVHLMDTGGYKLTR 124 Query: 65 NC-SIAKQMND----QTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 N S +M+D +T +A IL L+D+ I D + LR + +I+ N Sbjct: 125 NLKSRESEMDDLVVEKTVSMFQKADKILLLLDATE-INSEDEELIHLLRSYSDKLIVAVN 183 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNK 179 K + + Y FK+I ISA H G + L + +E ++ +K Sbjct: 184 KTEGGKNEHLAYNYMKYGFKDISLISAFHGDGLNVLQEKM------------IEGLDFSK 231 Query: 180 RNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITR 239 E S +E +P+RIA++G+PNVGKSTL N L + +G TR Sbjct: 232 VTEGSEEE--------------RPIRIAILGKPNVGKSTLSNALTHTESSIVSDYAGTTR 277 Query: 240 DSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPF 299 D V S+ + H I+I DTAG+R+ S++ E++E +V ++++++ C+ +++DA Sbjct: 278 DVVEGSFRYNGHDIQILDTAGIRRKSKVKENVEYYSVNRAIKTLDECDIAFIMIDAVEGL 337 Query: 300 EKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNL-PQIGDIYINTISG 358 +QD +I F G VV LNKWD++ D+ N + I+ + Q+ I +S Sbjct: 338 AEQDKKITGLAFERGRGVVFILNKWDLLEDQGNKTVKKTKEWIQTMFGQMNWAPIIPLSA 397 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 + +G+ +LM + LEI ++ T+ LN+ L+ + PPP + + +++Y+TQ Sbjct: 398 KNHDGIKNLMDTALEIYSQLTRKVDTASLNTALKDWLFKYPPPATRSIHFKIRYMTQTSI 457 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 +P +FLIF T P+ +P SY YL NR+R + IP+++ ++S+ + Sbjct: 458 NPVNFLIFATRPDNVPLSYVTYLKNRIREDLGFDHIPVQIEMKASRQKW 506 >gi|188524409|ref|ZP_03004430.1| ribosome-associated GTPase EngA [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|198273778|ref|ZP_03206312.1| ribosome-associated GTPase EngA [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|195660088|gb|EDX53468.1| ribosome-associated GTPase EngA [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|198249533|gb|EDY74315.1| ribosome-associated GTPase EngA [Ureaplasma urealyticum serovar 4 str. ATCC 27816] Length = 442 Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 139/464 (29%), Positives = 248/464 (53%), Gaps = 37/464 (7%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAIVG PNVGKS+LFNR++ ++ ++V + PG+TRDR+Y F ++DT GI Sbjct: 3 TIAIVGKPNVGKSSLFNRILMRRKSIVDDQPGVTRDRIYDVGNWLTRDFMLIDTGGIISS 62 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKK--NIPIIIVSNKM 121 ++ + +N+Q AINEA+ I+FL+ +K GI D I L++K + +I+V NK+ Sbjct: 63 ED-TYQDNINEQVLFAINEANTIIFLVSAKDGINNDDKKIAKMLKEKAKDKKVILVVNKV 121 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLE-MIENNKR 180 ++ N E+YS F + +ISAEH +G +L + K + P++ +E +R Sbjct: 122 ESEKYYFNEGELYSFGFGKFFKISAEHGIGMGDLLDELVK-------DMPIQNALEQQER 174 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 + ++GRPNVGKS+L N +LG R++ ++G TRD Sbjct: 175 -----------------------FKFCIIGRPNVGKSSLTNTILGEQRMIVNPEAGSTRD 211 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ +++ N I DTAG+R+ +I E++E+ V ++ +++ + +++LD + PF+ Sbjct: 212 SIDNDFSYHNKKYTIIDTAGVRRKGKIVEAVEKYAVLRTQKAIERSQLILLVLDGSEPFK 271 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKN-LPQIGDIYINTISGR 359 +QD + ++ ++ +NKWD +++K + ++ K I++ + I IS Sbjct: 272 EQDEVVGGLAYDANIPTIIVVNKWDNIANKNSHTMEMVKKQIRSQFKYLSWAPIVFISAL 331 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQ-LQNPPPTIFNRYNRLKYITQIQS 418 + + + ++ + + ++ TS LN + K Q PPP R + + Y+ Q+QS Sbjct: 332 DNKRIHTIFETIELVREQAMRKVATSLLNDVVIKANAFQEPPPFKGGRIS-ISYVVQVQS 390 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 P+F++ C P + SY RY+ N +R F +PI + +Q Sbjct: 391 QIPTFVLKCNNPKFLHFSYARYIENEIRKAFGFDSVPITLYWQD 434 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 43/129 (33%), Positives = 65/129 (50%), Gaps = 3/129 (2%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI-A 61 + I+G PNVGKS+L N ++ ++ +V G TRD + + + I+DTAG+ Sbjct: 175 FKFCIIGRPNVGKSSLTNTILGEQRMIVNPEAGSTRDSIDNDFSYHNKKYTIIDTAGVRR 234 Query: 62 DGKNC-SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 GK ++ K +T+ AI + LIL ++D D + NIP IIV NK Sbjct: 235 KGKIVEAVEKYAVLRTQKAIERSQLILLVLDGSEPFKEQDEVVGGLAYDANIPTIIVVNK 294 Query: 121 MDTRIAQRN 129 D IA +N Sbjct: 295 WDN-IANKN 302 >gi|168063155|ref|XP_001783539.1| predicted protein [Physcomitrella patens subsp. patens] gi|162664926|gb|EDQ51628.1| predicted protein [Physcomitrella patens subsp. patens] Length = 522 Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 155/495 (31%), Positives = 261/495 (52%), Gaps = 41/495 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPG--ITRDRLYGQAIINGVIFNIVDTAGI-A 61 + +VG PNVGKS LFNRL K++ A+V N P +TRD G A + + F ++DTAG+ Sbjct: 30 VLLVGRPNVGKSALFNRLTKRREALVYNTPDSHVTRDVREGVAKLGDMRFRVMDTAGLET 89 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRK--KNIPIIIVSN 119 D + S+ + T A+ + LFL+D ++G+ P D + +LRK N+ + ++ N Sbjct: 90 DAEAASVLYRTAGLTAAALRNCQIALFLVDGRSGVQPLDAEVGKWLRKLAPNVRVKVLLN 149 Query: 120 KMD------TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLE 173 K + + E YSL F V ISAE LG ++L+ + LE Sbjct: 150 KAEGMHDDASGSLMAAMGEAYSLGFGTPVAISAESGLGLADLYEDLRPWLSS------LE 203 Query: 174 MIENNKR--------NEESPKENITSEGKSSVKNIS---KPLRIAVVGRPNVGKSTLINR 222 I N +E K N+ E ++ + P+++A+ GRPNVGKSTL+N Sbjct: 204 DISINSEVRLSLGDTDEFETKLNLNEENEALMSEAELKRVPMQLAIAGRPNVGKSTLLNS 263 Query: 223 LLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQS 282 LL R+LTG + G+TRDS+ + + ++N I + DTAG + ++ E + + ++ Sbjct: 264 LLMEERVLTGPEPGLTRDSIRVEFEYENQKIFLVDTAGWMQRKKLKEGPAALSAMNARRN 323 Query: 283 VRTCETTIVLLDA-TIPFEKQDLRIVDS-----VFNTGHAVVLALNKWDMVSDKLNL-LQ 335 V+ ++LDA I K+ +R ++ V G +V+ +NK D+++ + L+ Sbjct: 324 VQRAHVVTLVLDAQEIAETKRSMRHTEAALAQWVVQEGRGLVVVVNKMDLLAGSEHARLR 383 Query: 336 DLRTKAI-----KNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSW 390 L KA+ K LPQ+ + I +S G+G +M V E +LW R+ T+ LN W Sbjct: 384 SLVMKAVPEEITKLLPQVTGVPIVFVSALEGKGRAAVMRHVNESYRLWCVRLPTAKLNRW 443 Query: 391 LQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFS 450 ++K ++P +++YITQ+++ PP+F++F + K+ ++ R++ + LR +F Sbjct: 444 IRKVMSRHPKGG-EGHGAKVRYITQVKARPPTFVVFVSGQGKLDDTELRFIASALREDFG 502 Query: 451 LSGIPIRMCFQSSKN 465 L GIPIR+ + SK+ Sbjct: 503 LVGIPIRVFQRCSKD 517 Score = 43.9 bits (102), Expect = 0.060, Method: Compositional matrix adjust. Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 3/93 (3%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLT--GSQSGITRDSVSISWNWKNHPIEIFDTAGMR 262 ++ +VGRPNVGKS L NRL L S +TRD + + DTAG+ Sbjct: 29 KVLLVGRPNVGKSALFNRLTKRREALVYNTPDSHVTRDVREGVAKLGDMRFRVMDTAGLE 88 Query: 263 KPSRITESLEQKTVKKSMQSVRTCETTIVLLDA 295 + L +T + ++R C+ + L+D Sbjct: 89 TDAEAASVL-YRTAGLTAAALRNCQIALFLVDG 120 >gi|322373918|ref|ZP_08048453.1| ribosome-associated GTPase EngA [Streptococcus sp. C150] gi|321277290|gb|EFX54360.1| ribosome-associated GTPase EngA [Streptococcus sp. C150] Length = 436 Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 136/462 (29%), Positives = 242/462 (52%), Gaps = 31/462 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AIVG PNVGKSTLFNR+ +++++V + G+TRDR+Y A F+++DT GI D Sbjct: 5 TVAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTSAEWLNRQFSLIDTGGI-DD 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + +Q+ Q ++A+ EA +I+F++ K G+T D + L K + P+I+ NK+D Sbjct: 64 VDAPFMEQIKHQADIAMTEADVIVFVVSGKEGVTDADEYVARILYKTHKPVILAVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + Y+ YSL + +S+ H +GT ++ I + N P E+ EE Sbjct: 124 PEMRADIYDFYSLGLGDPYPVSSVHGIGTGDVLDAIVE-------NLPTEI------EEE 170 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 +P +R +++GRPNVGKS+LIN +LG +R++ +G TRD++ Sbjct: 171 NP----------------DIIRFSLIGRPNVGKSSLINAILGEDRVIASPIAGTTRDAID 214 Query: 244 ISW-NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 ++ + + + DTAGMRK ++ E+ E+ +V +SM+++ + +++++A + Sbjct: 215 TNFVDSEGQEYTMIDTAGMRKSGKVYENTEKYSVMRSMRAIDRSDIVLMVINAEEGIREY 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D RI G +++ +NKWD + + + + + + I +S T + Sbjct: 275 DKRIAGFAHEAGKGIIIVVNKWDTIKKDNHTVANWEADIREQFQFLSYAPIIFVSAETKQ 334 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 L+ L + I++ RI+++ LN + NP PT + ++ Y TQ+ PP+ Sbjct: 335 RLNKLPEMIKRISESQNRRISSAVLNDVIMDAIAINPTPTDKGKRLKIFYGTQVSVKPPT 394 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 F+IF + SY R+L N++R F G PI + + K Sbjct: 395 FVIFVNEEELMHFSYMRFLENQIRQAFGFEGTPIHLIARKRK 436 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/130 (30%), Positives = 67/130 (51%), Gaps = 13/130 (10%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIIN-GVIFNIVDTAGI 60 I +++G PNVGKS+L N ++ + + G TRD + + + G + ++DTAG+ Sbjct: 174 IIRFSLIGRPNVGKSSLINAILGEDRVIASPIAGTTRDAIDTNFVDSEGQEYTMIDTAGM 233 Query: 61 -------ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIP 113 + + S+ + M AI+ + ++L +I+++ GI YD I F + Sbjct: 234 RKSGKVYENTEKYSVMRSMR-----AIDRSDIVLMVINAEEGIREYDKRIAGFAHEAGKG 288 Query: 114 IIIVSNKMDT 123 IIIV NK DT Sbjct: 289 IIIVVNKWDT 298 >gi|188518230|ref|ZP_03003765.1| ribosome-associated GTPase EngA [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|188998276|gb|EDU67373.1| ribosome-associated GTPase EngA [Ureaplasma urealyticum serovar 11 str. ATCC 33695] Length = 442 Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 138/463 (29%), Positives = 247/463 (53%), Gaps = 35/463 (7%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAIVG PNVGKS+LFNR++ ++ ++V + PG+TRDR+Y F ++DT GI Sbjct: 3 TIAIVGKPNVGKSSLFNRILMRRKSIVDDQPGVTRDRIYDVGNWLTRDFMLIDTGGIISS 62 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKK--NIPIIIVSNKM 121 ++ + +N+Q AINEA+ I+FL+ +K GI D I L++K + +I+V NK+ Sbjct: 63 ED-TYQDNINEQVLFAINEANTIIFLVSAKDGINNDDKKIAKMLKEKAKDKKVILVVNKV 121 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 ++ N E+YS F + +ISAEH +G +L + K Sbjct: 122 ESEKYYFNEGELYSFGFGKFFKISAEHGIGMGDLLDELVK-------------------- 161 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 + P +N + + + ++GRPNVGKS+L N +LG R++ +++G TRDS Sbjct: 162 -DMPIQNALDQ--------QERFKFCIIGRPNVGKSSLTNTILGEQRMIVNAEAGSTRDS 212 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 + +++ N I DTAG+R+ +I E++E+ V ++ +++ + +++LD + PF++ Sbjct: 213 IDNDFSYHNKKYTIIDTAGVRRKGKIVEAVEKYAVLRTQKAIERSQLILLVLDGSEPFKE 272 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKN-LPQIGDIYINTISGRT 360 QD + ++ ++ +NKWD + +K + ++ K I++ + I IS Sbjct: 273 QDEVVGGLAYDANIPTIIVVNKWDNIVNKNSHTMEMVKKQIRSQFKYLSWAPIVFISALD 332 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQ-LQNPPPTIFNRYNRLKYITQIQSS 419 + + + ++ + + ++ TS LN + K Q PPP R + + Y+ Q+QS Sbjct: 333 NKRIHTIFETIELVREQAMRKVATSLLNDVVIKANAFQEPPPFKGGRIS-ISYVVQVQSQ 391 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 P+F++ C P + SY RY+ N +R F +PI + +Q+ Sbjct: 392 IPTFVLKCNNPKFLHFSYARYIENEIRKAFGFDSVPITLYWQN 434 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 40/122 (32%), Positives = 61/122 (50%), Gaps = 2/122 (1%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI-A 61 + I+G PNVGKS+L N ++ ++ +V G TRD + + + I+DTAG+ Sbjct: 175 FKFCIIGRPNVGKSSLTNTILGEQRMIVNAEAGSTRDSIDNDFSYHNKKYTIIDTAGVRR 234 Query: 62 DGKNC-SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 GK ++ K +T+ AI + LIL ++D D + NIP IIV NK Sbjct: 235 KGKIVEAVEKYAVLRTQKAIERSQLILLVLDGSEPFKEQDEVVGGLAYDANIPTIIVVNK 294 Query: 121 MD 122 D Sbjct: 295 WD 296 >gi|188024473|ref|ZP_02997121.1| ribosome-associated GTPase EngA [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|209554037|ref|YP_002284819.1| GTP-binding protein EngA [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|238058980|sp|B5ZBM9|DER_UREU1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|188018583|gb|EDU56623.1| ribosome-associated GTPase EngA [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|209541538|gb|ACI59767.1| ribosome-associated GTPase EngA [Ureaplasma urealyticum serovar 10 str. ATCC 33699] Length = 442 Score = 228 bits (580), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 138/463 (29%), Positives = 246/463 (53%), Gaps = 35/463 (7%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAIVG PNVGKS+LFNR++ ++ ++V + PG+TRDR+Y F ++DT GI Sbjct: 3 TIAIVGKPNVGKSSLFNRILMRRKSIVDDQPGVTRDRIYDVGNWLTRDFMLIDTGGIISS 62 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKK--NIPIIIVSNKM 121 ++ + +N+Q AINEA+ I+FL+ +K GI D I L++K + +I+V NK+ Sbjct: 63 ED-TYQDNINEQVLFAINEANTIIFLVSAKDGINNDDKKIAKMLKEKAKDKKVILVVNKV 121 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 ++ N E+YS F + +ISAEH +G +L + K Sbjct: 122 ESEKYYFNEGELYSFGFGKFFKISAEHGIGMGDLLDELVK-------------------- 161 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 + P +N + + + ++GRPNVGKS+L N +LG R++ +++G TRDS Sbjct: 162 -DMPIQNALDQ--------QERFKFCIIGRPNVGKSSLTNTILGEQRMIVNAEAGSTRDS 212 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 + +++ N I DTAG+R+ +I E++E+ V ++ +++ + +++LD + PF++ Sbjct: 213 IDNDFSYHNKKYTIIDTAGVRRKGKIVEAVEKYAVLRTQKAIERSQLILLVLDGSEPFKE 272 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKN-LPQIGDIYINTISGRT 360 QD + ++ ++ +NKWD + +K + ++ K I++ + I IS Sbjct: 273 QDEVVGGLAYDANIPTIIVVNKWDNIVNKNSHTMEMVKKQIRSQFKYLSWAPIVFISALD 332 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQ-LQNPPPTIFNRYNRLKYITQIQSS 419 + + + ++ + + ++ TS LN + K Q PPP R + + Y+ Q+QS Sbjct: 333 NKRIHTIFETIELVREQAMRKVATSLLNDVVIKANAFQEPPPFKGGRIS-ISYVVQVQSQ 391 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 P+F++ C P + SY RY+ N +R F +PI + +Q Sbjct: 392 IPTFVLKCNNPKFLHFSYARYIENEIRKAFGFDSVPITLYWQD 434 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 40/122 (32%), Positives = 61/122 (50%), Gaps = 2/122 (1%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI-A 61 + I+G PNVGKS+L N ++ ++ +V G TRD + + + I+DTAG+ Sbjct: 175 FKFCIIGRPNVGKSSLTNTILGEQRMIVNAEAGSTRDSIDNDFSYHNKKYTIIDTAGVRR 234 Query: 62 DGKNC-SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 GK ++ K +T+ AI + LIL ++D D + NIP IIV NK Sbjct: 235 KGKIVEAVEKYAVLRTQKAIERSQLILLVLDGSEPFKEQDEVVGGLAYDANIPTIIVVNK 294 Query: 121 MD 122 D Sbjct: 295 WD 296 >gi|283850821|ref|ZP_06368107.1| small GTP-binding protein [Desulfovibrio sp. FW1012B] gi|283573744|gb|EFC21718.1| small GTP-binding protein [Desulfovibrio sp. FW1012B] Length = 444 Score = 228 bits (580), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 144/467 (30%), Positives = 246/467 (52%), Gaps = 34/467 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNRL K+ A+ + PG+TRDRL ++ I ++DT G+ Sbjct: 5 VAIVGRPNVGKSTLFNRLAKRPKAITHDRPGVTRDRLEATVELDDRIVTLIDTGGMDFDA 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +Q+ Q E+A+N A ++LFL+D KAG T D + LR+ + P+++ NK+D Sbjct: 65 PEGLERQIVVQAEIALNMADVVLFLVDGKAGRTALDDEMAERLRRTDKPVVVAVNKVDGA 124 Query: 125 I---AQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 A N + + ++ ISA H G ++L + E++ N Sbjct: 125 EKINALTNDFHAWGF---AMMPISAAHGHGVNDLAGAL------------AELLPEVSEN 169 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 ++ P+ G +R+AV+GRPN GKS+L+N LLG +R++ G TRD+ Sbjct: 170 KDEPRAEPVEAG----------IRLAVLGRPNAGKSSLVNALLGEDRMIVSEVPGTTRDA 219 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 V ++ DTAG+RK +RIT+ +E+ +V K++ S + + +V++DAT Sbjct: 220 VDVAVIRNGRRYVFVDTAGVRKRTRITDGVERYSVNKALGSAKRADVAVVVVDATGGVGV 279 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVS--DKLNLLQDLRTKAIKNLPQIGDIYINTISGR 359 QD R++ + ++A+NK D+V+ D L L +D+ + L + + +S Sbjct: 280 QDKRLISYLDKERTPFLVAVNKVDLVAQQDMLTLKKDIE----EELRMCSHVPVLYLSAA 335 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 G+G+ ++ I K R+ T LN +++ ++ PP + R + Y+TQ + Sbjct: 336 KGKGVAKVLPLAETIWKECGIRVGTGALNRAMREVLDKHQPPLVNGRRAKFYYLTQAATP 395 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNP 466 PP+F+ F + ++ +SY +YL N LR F +S P+++ ++S P Sbjct: 396 PPTFVFFVSDTERVRDSYAKYLENALRKLFKISMAPVKVVCRASHKP 442 Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 51/173 (29%), Positives = 86/173 (49%), Gaps = 13/173 (7%) Query: 203 PLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMR 262 P +A+VGRPNVGKSTL NRL + +T + G+TRD + + + + + DT GM Sbjct: 2 PPIVAIVGRPNVGKSTLFNRLAKRPKAITHDRPGVTRDRLEATVELDDRIVTLIDTGGMD 61 Query: 263 KPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALN 322 + E LE++ V ++ ++ + + L+D D + + + T VV+A+N Sbjct: 62 FDA--PEGLERQIVVQAEIALNMADVVLFLVDGKAGRTALDDEMAERLRRTDKPVVVAVN 119 Query: 323 KWDMVSDKLNLL-QDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEI 374 K D ++K+N L D +P IS G G++DL ++ E+ Sbjct: 120 KVDG-AEKINALTNDFHAWGFAMMP---------ISAAHGHGVNDLAGALAEL 162 >gi|256392245|ref|YP_003113809.1| small GTP-binding protein [Catenulispora acidiphila DSM 44928] gi|256358471|gb|ACU71968.1| small GTP-binding protein [Catenulispora acidiphila DSM 44928] Length = 493 Score = 228 bits (580), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 142/457 (31%), Positives = 240/457 (52%), Gaps = 30/457 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ A NG F++VDT G + Sbjct: 57 LAVVGRPNVGKSTLVNRILGRREAVVQDVPGVTRDRVSYDAHWNGRRFSLVDTGGW-ERD 115 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +AK + Q E AI+ A ++F++D+ GIT D A+ LRK P+I+ +NK+D + Sbjct: 116 VEGMAKAVAFQAEAAIHAADAVMFVVDATVGITDTDEAVVRVLRKAGKPVILAANKVDDQ 175 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + N E+++L E +SA H G+ +L + + Sbjct: 176 RTEANAAELWNLGLGEPFAVSALHGRGSGDLLDAVLDALPA------------------T 217 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 PK + + P R+A+VG+PNVGKS+L+N+L G R++ + +G TRD V Sbjct: 218 PKVRFG-------ELMGGPRRVALVGKPNVGKSSLLNKLAGEERVVVDATAGTTRDPVDE 270 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + DTAG+R+ T + ++ ++ E +VL+DA+ +QDL Sbjct: 271 LIDLGGKTWRFVDTAGIRRRVHQTYGADFYASLRTQGAIDKAEVAVVLVDASDSLTEQDL 330 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 RI+ V G A+V+A NKWD++ ++ L + ++L Q+ ++ TG + Sbjct: 331 RIITMVAEAGRALVIAYNKWDLMDEERRYY--LEREIERDLVQVRWAPRVNLAALTGRHV 388 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 D L+ ++ + W+TR+ T+ LN++L ++P P + R+ + TQ + PP F+ Sbjct: 389 DKLVPALEQALAGWETRVPTAKLNAFLGTLVAEHPHPLRGGKQPRILFGTQASTRPPRFV 448 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 +F + I Y+R++ RLR F +G PI++ + Sbjct: 449 LFAS--GFIEAGYRRFIERRLREEFGFTGTPIQISVK 483 >gi|88855492|ref|ZP_01130156.1| GTP-binding protein EngA [marine actinobacterium PHSC20C1] gi|88815399|gb|EAR25257.1| GTP-binding protein EngA [marine actinobacterium PHSC20C1] Length = 506 Score = 228 bits (580), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 148/458 (32%), Positives = 237/458 (51%), Gaps = 39/458 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI---A 61 +AIVG PNVGKS L NR++ ++ AVV + PG+TRDR+ +A N F IVDT G A Sbjct: 73 LAIVGRPNVGKSALVNRIIGRREAVVEDTPGVTRDRVNYKAEWNNRHFTIVDTGGWEPDA 132 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 G + S+A Q E+AI+ A +LF++D+ G T D + LR N P+I+V+NK+ Sbjct: 133 KGIDASVAA----QAEIAIDLADAVLFVVDATVGPTSTDEHVVRMLRATNKPVILVANKV 188 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D + + ++SL + SA H G ++L + + Sbjct: 189 DDVHQESDAASLWSLGLGQPWPASAVHGRGVADLLDKVLLV------------------- 229 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 PK I++ K + + P R+A++GRPNVGKS+L+N+ G R++ +G TRD Sbjct: 230 --LPK--ISAVAK---EEVGGPRRVAILGRPNVGKSSLLNKTAGEERVVVNELAGTTRDP 282 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 V DTAG+R+ + + + ++ ++ E +V+ D + P Sbjct: 283 VDEQIELGGKFWRFVDTAGIRRRVALAQGADFYATLRTSAALEKAEVAVVIFDVSQPLSV 342 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAI-KNLPQIGDIYINTISGRT 360 QDL+IVD V +G A+VLA NKWD++ D+ +DL + I K+L + IS +T Sbjct: 343 QDLKIVDLVLESGRALVLAFNKWDLLDDE---RRDLLEREIDKDLGHVSWAPRVNISAKT 399 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G ++ L+ ++ + W TRI T N+ L + ++P P + R+ + TQ S P Sbjct: 400 GRHMEKLVPALELALESWDTRIPTGKFNALLAELTQEHPHPLRGGKQPRILFGTQASSRP 459 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 P+F++F T + Y+R++ RLR F G PI++ Sbjct: 460 PTFVLFTT--GFLDPQYRRFITRRLREIFGFDGSPIQV 495 >gi|225871164|ref|YP_002747111.1| GTP-binding protein EngA [Streptococcus equi subsp. equi 4047] gi|225700568|emb|CAW95070.1| GTP-binding protein EngA [Streptococcus equi subsp. equi 4047] Length = 446 Score = 228 bits (580), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 136/462 (29%), Positives = 238/462 (51%), Gaps = 31/462 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AIVG PNVGKSTLFNR+ +++++V + G+TRDR+Y F+++DT GI D Sbjct: 15 TVAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTTGEWLNRQFSLIDTGGI-DD 73 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + +Q+ Q +A++EA +I+F++ K G+T D ++ L + N P+I+V NK+D Sbjct: 74 VDAPFMEQIKHQAHIAMDEADVIVFVVSGKEGVTDADEYVSKLLYRTNKPVILVVNKVDN 133 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + Y+ YSL + +S+ H +GT ++ I N P+ E Sbjct: 134 PEMRNDIYDFYSLGLGDSFPVSSVHGIGTGDVLDAIID-------NLPI----------E 176 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 P EN +R +++GRPNVGKS+LIN +LG R++ +G TRD++ Sbjct: 177 EPVEN------------DDVIRFSLIGRPNVGKSSLINAILGEERVIASPVAGTTRDAID 224 Query: 244 ISW-NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 S+ + + DTAGMRK ++ E+ E+ +V ++M+++ + +++++A Sbjct: 225 TSFTDESGQAYTMIDTAGMRKSGKVYENTEKYSVMRAMRAIDRSDIVLMVINAEEGIRDY 284 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D RI G +++ +NKWD + + + + I +S T + Sbjct: 285 DKRIAGFAHEAGKGMIIVVNKWDTIEKDNHTVARWEADIRDQFQFLTYAPIIFVSAVTKQ 344 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 L+ L + I+ RI+++ LN + NP PT R ++ Y TQ+ PP+ Sbjct: 345 RLNRLPELIKRISDSQSQRISSAILNDVIMDAIAINPTPTDKGRRLKIFYATQVSVKPPT 404 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 F++F + SY R+L N++R F+ G PI++ ++ K Sbjct: 405 FVVFVNEEELMHFSYLRFLENQIRAAFTFEGTPIKLIARNRK 446 >gi|153853314|ref|ZP_01994723.1| hypothetical protein DORLON_00710 [Dorea longicatena DSM 13814] gi|149754100|gb|EDM64031.1| hypothetical protein DORLON_00710 [Dorea longicatena DSM 13814] Length = 442 Score = 228 bits (580), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 137/470 (29%), Positives = 234/470 (49%), Gaps = 47/470 (10%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFN L + +++V + PG+TRDR+Y F ++DT GI Sbjct: 6 VAIVGRPNVGKSTLFNVLAGEMISIVKDTPGVTRDRIYADVTWLDKEFTMIDTGGIEPES 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I QM +Q ++AI+ A +I+F+ D + G+ D + LR+ P+++ NK+D Sbjct: 66 KDIILSQMREQAQIAIDTADVIIFITDVRQGLVDADSKVADMLRRSGKPVVLAVNKVD-- 123 Query: 125 IAQRNF-------YEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 NF YE Y+L + V +SA LG ++ + F + Sbjct: 124 ----NFDKFMPDVYEFYNLGIGDPVPVSAASRLGIGDMLDAVIAHFPEH----------- 168 Query: 178 NKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGI 237 ++ K +P R+A+VG+PNVGKS++IN+L G R++ +G Sbjct: 169 ----------------EAEEKEDERP-RVAIVGKPNVGKSSIINKLTGKQRVIVSDVAGT 211 Query: 238 TRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATI 297 TRD++ + + DTAG+R+ S+I E LE+ ++ +++ +V + +V++DAT Sbjct: 212 TRDAIDTNVKYNGKDYVFIDTAGLRRKSKIKEELERYSIIRTVTAVERADVVLVVIDATE 271 Query: 298 PFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRT---KAIKNLPQIGDIYIN 354 +QD +I G +++ +NKWD + +++ + + +P +Y++ Sbjct: 272 GVTEQDAKIAGIAHERGKGIIIVVNKWDAIEKNDKTMREYENNVRRVLSFMPYAEIMYVS 331 Query: 355 TISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYIT 414 +G+ L D++ V+E L R+ T LN + + PP+ + +L YIT Sbjct: 332 AETGQRLNKLYDMIDMVIENQTL---RVATGVLNEIMTEAVAMQQPPSDKGKRLKLYYIT 388 Query: 415 QIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 Q+ PPSF+IF + SY RYL N++R F G ++ + K Sbjct: 389 QVAVKPPSFVIFVNNKELMHFSYTRYLENKIREAFGFRGTALKFFIRERK 438 >gi|78184221|ref|YP_376656.1| GTP-binding protein EngA [Synechococcus sp. CC9902] gi|123581907|sp|Q3AZ65|DER_SYNS9 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|78168515|gb|ABB25612.1| Small GTP-binding protein domain [Synechococcus sp. CC9902] Length = 455 Score = 228 bits (580), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 134/467 (28%), Positives = 236/467 (50%), Gaps = 38/467 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKSTL NRL + + A+V + PG+TRDR Y F +VDT G+ Sbjct: 6 VAIIGRPNVGKSTLVNRLCRSREAIVHDQPGVTRDRTYQDGYWGDREFKVVDTGGLVFDD 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 + ++ +Q LA++EA + L ++D K G+T D +I FLR++ P ++ NK ++ Sbjct: 66 DSEFLPEIREQAALALDEASVALVIVDGKQGLTAADESIAEFLRQQRCPTLLAVNKCESV 125 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 E +SL E ISA H GT+E+ + K ++E Sbjct: 126 EQGLAMAAEFWSLGLGEPYPISAIHGAGTAEVLDQVLTFLPPK--------------DQE 171 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 +E +P++++++GRPNVGKS+L+N + G R + G TRD++ Sbjct: 172 GDEE--------------EPIQMSIIGRPNVGKSSLLNAICGEQRAIVSPIRGTTRDTID 217 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + +N P + DTAG+R+ + E + +S +++ + ++++DA +QD Sbjct: 218 TNIVRENRPWRLVDTAGIRRRRSVNYGPEYFGINRSFKAIERSDVCVLVIDALDGVTEQD 277 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLL----QDLRTKAIKNLPQIGDIYINTISGR 359 R+ + G A V+ +NKWD V + + ++LR K + L ++ + ++G+ Sbjct: 278 QRLAGRIEEDGRACVVVVNKWDAVEKDSHTMSATEKELRAK-LYFLDWAPMLFTSALTGQ 336 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKT-QLQNPPPTIFNRYNRLKYITQIQS 418 E + L +E + + R+TTS +N L++ ++PP T R +L Y TQ+ S Sbjct: 337 RVESIFALAALAVEQH---RRRVTTSVVNEVLKEALSWRSPPTTRGGRQGKLYYGTQVAS 393 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 PPSF +F P ++Y+RY+ +R G P+++ ++ + Sbjct: 394 RPPSFTLFVNDPKLFGDTYRRYVERHIREGLGFDGTPLKLFWRGKQQ 440 >gi|55820417|ref|YP_138859.1| GTP-binding protein EngA [Streptococcus thermophilus LMG 18311] gi|55822299|ref|YP_140740.1| GTP-binding protein EngA [Streptococcus thermophilus CNRZ1066] gi|81820353|sp|Q5M1D9|DER_STRT1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|81820516|sp|Q5M5X5|DER_STRT2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|55736402|gb|AAV60044.1| phosphoglycerate dehydrogenase-related protein [Streptococcus thermophilus LMG 18311] gi|55738284|gb|AAV61925.1| GTP-binding protein, putative [Streptococcus thermophilus CNRZ1066] Length = 436 Score = 228 bits (580), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 136/462 (29%), Positives = 240/462 (51%), Gaps = 31/462 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AIVG PNVGKSTLFNR+ +++++V + G+TRDR+Y A F+++DT GI D Sbjct: 5 TVAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTSAEWLNRQFSLIDTGGI-DD 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + +Q+ Q +A+ EA +I+F++ K G+T D + L K N P+I+ NK+D Sbjct: 64 VDAPFMEQIKHQAGIAMTEADVIVFVVSGKEGVTDADEYVARILYKTNKPVILAVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + Y+ YSL + +S+ H +GT ++ I N P E+ EE Sbjct: 124 PEMRADIYDFYSLGLGDPYPVSSVHGIGTGDVLDAIVG-------NLPTEV------EEE 170 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 +P +R +++GRPNVGKS+LIN +LG +R++ +G TRD++ Sbjct: 171 NP----------------DIIRFSLIGRPNVGKSSLINAILGEDRVIASPIAGTTRDAID 214 Query: 244 ISW-NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 ++ + + + DTAGMRK ++ E+ E+ ++ +SM+++ + +++++A + Sbjct: 215 TNFVDSEGQEYTMIDTAGMRKSGKVYENTEKYSIMRSMRAIDRSDVVLMVINAEEGIREY 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D RI G +++ +NKWD + + + + + I +S +T + Sbjct: 275 DKRIAGFAHEAGKGIIIVVNKWDTIKKDNHTVANWEADIRDQFQFLSYAPIVFVSAKTKQ 334 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 L+ L + I++ RI+++ LN + NP PT + ++ Y TQ+ PP+ Sbjct: 335 RLNKLPEMIKRISESQNRRISSAVLNDVIMDAIAINPTPTDKGKRLKIFYGTQVSVKPPT 394 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 F+IF + SY R+L N++R F G PI + + K Sbjct: 395 FVIFVNEEELMHFSYMRFLENQIRQAFGFEGTPIHLIARKRK 436 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/130 (30%), Positives = 67/130 (51%), Gaps = 13/130 (10%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIIN-GVIFNIVDTAGI 60 I +++G PNVGKS+L N ++ + + G TRD + + + G + ++DTAG+ Sbjct: 174 IIRFSLIGRPNVGKSSLINAILGEDRVIASPIAGTTRDAIDTNFVDSEGQEYTMIDTAGM 233 Query: 61 -------ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIP 113 + + SI + M AI+ + ++L +I+++ GI YD I F + Sbjct: 234 RKSGKVYENTEKYSIMRSMR-----AIDRSDVVLMVINAEEGIREYDKRIAGFAHEAGKG 288 Query: 114 IIIVSNKMDT 123 IIIV NK DT Sbjct: 289 IIIVVNKWDT 298 >gi|296393716|ref|YP_003658600.1| ribosome-associated GTPase EngA [Segniliparus rotundus DSM 44985] gi|296180863|gb|ADG97769.1| ribosome-associated GTPase EngA [Segniliparus rotundus DSM 44985] Length = 450 Score = 227 bits (579), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 154/458 (33%), Positives = 224/458 (48%), Gaps = 40/458 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI---A 61 IAIVG PNVGKSTL NR V ++ AVV + PG+TRDR+ A G F + DT G A Sbjct: 14 IAIVGRPNVGKSTLVNRFVGRRAAVVEDVPGVTRDRVSYDAEWGGRSFLVQDTGGWEPDA 73 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 G SIA+Q ELA+ A +IL ++D++AG T D A+ LR+ P+ +V NK Sbjct: 74 TGIGLSIAQQ----AELAMATADVILLVVDAQAGATGVDEALAKSLRRSKKPVFLVGNKS 129 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D + ++SL +SA H G+ +L + R Sbjct: 130 DNPQIENESSGLWSLGLGRPYPVSALHGKGSGDLLDAALEAVPAVL-----------ARE 178 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 +E P+ P R+A+VGRPNVGKS+LIN+L G NR + S +G T D Sbjct: 179 DEGPR----------------PRRVALVGRPNVGKSSLINKLSGENRSVVDSVAGTTVDP 222 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 V + DTAG+R+ E ++ ++ E IVL+DA++P + Sbjct: 223 VDSLIALDGEEWQFVDTAGLRRKVGQASGHEFYAAVRTKSAIEAAEVVIVLIDASVPLTE 282 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMV-SDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 QD R+ V G A+V+A NKWD+V D+ + L+ + + + + I+ +SGR Sbjct: 283 QDQRVFGMVGEAGRAMVIACNKWDLVDEDRRHELERELDRGLTRVTWAPRVNISALSGRA 342 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 L + L+ W+ RI T LN W + PPP R RL Y TQ + P Sbjct: 343 VHKLAPALRVALDS---WEKRIPTGELNQWFSEITAATPPPPRGGRIPRLLYATQATAQP 399 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 P+F++F T + Y+R+L +LR F G PI++ Sbjct: 400 PTFVLFTT--GFLEAGYRRFLERKLRETFGFEGTPIQI 435 >gi|303284441|ref|XP_003061511.1| predicted protein [Micromonas pusilla CCMP1545] gi|226456841|gb|EEH54141.1| predicted protein [Micromonas pusilla CCMP1545] Length = 470 Score = 227 bits (579), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 142/484 (29%), Positives = 254/484 (52%), Gaps = 52/484 (10%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI---- 60 +AIVG PNVGKS LFNRL K A+V + PGITRDR+Y +A F +VDT G+ Sbjct: 6 VAIVGRPNVGKSALFNRLTGTKRAIVYDQPGITRDRMYVRAFWGDSEFMMVDTGGLESLP 65 Query: 61 ----------ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKK 110 A G + + Q LA+ EA ++ ++D + G+T D I ++RK Sbjct: 66 GNPGAAPSVDAVGGFEILPGMIESQAALAVREAASLVMVVDGQTGLTTADVDIYRWIRKN 125 Query: 111 NI--PIIIVSNKMD-TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKY 167 + P+++ NK + T + + +SL + +SA GT ++ + Sbjct: 126 HADKPLVLAVNKCESTTRGEEQVLDFWSLGGVTPLAVSAISGTGTGDMMDQLCATL---- 181 Query: 168 PNHPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYN 227 P N E K S + +++PL++A+VGRPNVGKS+L+N+L G Sbjct: 182 -----------------PAVNADDE-KESGEEVAEPLKVAIVGRPNVGKSSLLNQLSGDA 223 Query: 228 RLLTGSQSGITRDSV-SISWNWKNHPIEIFDTAGMRKPSRIT---ESLEQKTVKKSMQSV 283 R + SG TRD++ S + + + DTAG+R+ + + + E+ +V +++Q++ Sbjct: 224 RAIVSDHSGTTRDTIDSDVTDADGNKFTLIDTAGIRRRTAVAAGKDKPEELSVGRALQAM 283 Query: 284 RTCETTIVLLDATIPFEKQDLRIVD-SVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAI 342 R E ++++DA +QD + + + G A+VL +NKWD++ DK + + TK++ Sbjct: 284 RRAEVVVLVIDAEEGPSQQDFVLAERAALTEGCALVLCVNKWDVI-DKNSYSMNEYTKSL 342 Query: 343 KNLPQIGD----IYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQN 398 ++ ++ + +Y++ + TG+ + ++ + +E + + R++T+ LN+ +Q+ L Sbjct: 343 RSKLRVFEWASVVYVSAL---TGQRVQKVLAAAVEASTHHRKRLSTATLNAVVQEATLWK 399 Query: 399 PPPTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 PP+ R ++ Y+TQ + PP+F+ FC P E+Y+RY+ LR N G P+R+ Sbjct: 400 SPPSRGGRKGKVYYVTQASTRPPTFVFFCNDPKLFVETYRRYMERSLRENIGFPGTPVRI 459 Query: 459 CFQS 462 ++ Sbjct: 460 LWRG 463 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 53/187 (28%), Positives = 86/187 (45%), Gaps = 22/187 (11%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK- 263 R+A+VGRPNVGKS L NRL G R + Q GITRD + + W + + DT G+ Sbjct: 5 RVAIVGRPNVGKSALFNRLTGTKRAIVYDQPGITRDRMYVRAFWGDSEFMMVDTGGLESL 64 Query: 264 -------PSRIT----ESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFN 312 PS E L ++ +VR + ++++D D+ I + Sbjct: 65 PGNPGAAPSVDAVGGFEILPGMIESQAALAVREAASLVMVVDGQTGLTTADVDIYRWI-R 123 Query: 313 TGHA---VVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGR-TGEGLDDLM 368 HA +VLA+NK + + + D + L + + ++ ISG TG+ +D L Sbjct: 124 KNHADKPLVLAVNKCESTTRGEEQVLDFWS-----LGGVTPLAVSAISGTGTGDMMDQLC 178 Query: 369 VSVLEIN 375 ++ +N Sbjct: 179 ATLPAVN 185 >gi|116071134|ref|ZP_01468403.1| GTP-binding protein EngA [Synechococcus sp. BL107] gi|116066539|gb|EAU72296.1| GTP-binding protein EngA [Synechococcus sp. BL107] Length = 455 Score = 227 bits (579), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 134/467 (28%), Positives = 236/467 (50%), Gaps = 38/467 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKSTL NRL + + A+V + PG+TRDR Y F +VDT G+ Sbjct: 6 VAIIGRPNVGKSTLVNRLCRSREAIVHDQPGVTRDRTYQDGYWGDREFKVVDTGGLVFDD 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 + ++ +Q LA++EA + L ++D K G+T D +I FLR++ P ++ NK ++ Sbjct: 66 DSEFLPEIREQAALALDEASVALVIVDGKQGLTAADESIAEFLRQQRCPTLLAVNKCESV 125 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 E +SL E ISA H GT+E+ + K ++E Sbjct: 126 EQGLAMAAEFWSLGLGEPYPISAIHGAGTAEVLDKVLTFLPPK--------------DQE 171 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 +E +P++++++GRPNVGKS+L+N + G R + G TRD++ Sbjct: 172 GDEE--------------EPIQMSIIGRPNVGKSSLLNAICGEQRAIVSPIRGTTRDTID 217 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + +N P + DTAG+R+ + E + +S +++ + ++++DA +QD Sbjct: 218 TNIVRENRPWRLVDTAGIRRRRSVNYGPEYFGINRSFKAIERSDVCVLVIDALDGVTEQD 277 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLL----QDLRTKAIKNLPQIGDIYINTISGR 359 R+ + G A V+ +NKWD V + + ++LR K + L ++ + ++G+ Sbjct: 278 QRLAGRIEEDGRACVVVVNKWDAVEKDSHTMSATEKELRAK-LYFLDWAPMLFTSALTGQ 336 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKT-QLQNPPPTIFNRYNRLKYITQIQS 418 E + L +E + + R+TTS +N L++ ++PP T R +L Y TQ+ S Sbjct: 337 RVESIFALAALAVEQH---RRRVTTSVVNEVLKEALSWRSPPTTRGGRQGKLYYGTQVAS 393 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 PPSF +F P ++Y+RY+ +R G P+++ ++ + Sbjct: 394 RPPSFTLFVNDPKLFGDTYRRYVERHIREGLGFDGTPLKLFWRGKQQ 440 >gi|78213545|ref|YP_382324.1| GTP-binding protein EngA [Synechococcus sp. CC9605] gi|123577697|sp|Q3AI13|DER_SYNSC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|78198004|gb|ABB35769.1| Small GTP-binding protein domain [Synechococcus sp. CC9605] Length = 455 Score = 227 bits (579), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 136/467 (29%), Positives = 234/467 (50%), Gaps = 38/467 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKSTL NRL + + A+V + PG+TRDR Y F +VDT G+ Sbjct: 6 VAIIGRPNVGKSTLVNRLCRSREAIVHDQPGVTRDRTYQDGYWGDREFKVVDTGGLVFDD 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 + ++ +Q LA+ EA + L ++D + G+T D +I FLR P ++ NK ++ Sbjct: 66 DSEFLPEIREQAALALEEASVALVIVDGQQGLTAADESIAEFLRSHRCPTLLAVNKCESP 125 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 E +SL E ISA H GT EL + K ++E Sbjct: 126 EQGLAMAGEFWSLGLGEPHPISAIHGAGTGELLDQVLTFLPPK--------------DQE 171 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 +E +P+++A++GRPNVGKS+L+N + G R + G TRD++ Sbjct: 172 GDEE--------------EPIQMAIIGRPNVGKSSLLNAICGEQRAIVSPIRGTTRDTID 217 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 S +N P + DTAG+R+ + E + +S +++ + ++++DA +QD Sbjct: 218 TSIIRENRPWRLVDTAGIRRRRSVNYGPEFFGINRSFKAIERSDVCVLVIDALDGVTEQD 277 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLL----QDLRTKAIKNLPQIGDIYINTISGR 359 R+ + G A V+ +NKWD + + + ++LR+K + L ++ + ++G+ Sbjct: 278 QRLAGRIEEDGRACVVVVNKWDALEKDSHTMTAMEKELRSK-LYFLDWAPMLFTSALTGQ 336 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKT-QLQNPPPTIFNRYNRLKYITQIQS 418 E + L +E + + R++TS +N L++ ++PP T R +L Y TQ+ S Sbjct: 337 RVESIFALAALAVEQH---RRRVSTSVVNEVLKEALSWRSPPTTRGGRQGKLYYGTQVAS 393 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 PPSF +F P E+Y+RY+ ++R G P+R+ ++ + Sbjct: 394 RPPSFTLFVNDPKMFGETYRRYVERQIREGLGFDGSPLRLFWRGKQQ 440 >gi|256828007|ref|YP_003156735.1| small GTP-binding protein [Desulfomicrobium baculatum DSM 4028] gi|256577183|gb|ACU88319.1| small GTP-binding protein [Desulfomicrobium baculatum DSM 4028] Length = 445 Score = 227 bits (579), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 145/469 (30%), Positives = 238/469 (50%), Gaps = 44/469 (9%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A++G PNVGKSTLFNRL+K+++++ + G+TRD ++ + + ++DT G+ Sbjct: 8 VALIGRPNVGKSTLFNRLIKRRVSITHDMAGVTRDSIFSEVRGETRTYMLIDTGGLVPDS 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + I + DQ A+ A LILF++D + G+ P D + +LR+ + ++ NK+D Sbjct: 68 SDEIEISIFDQAREAMAGADLILFIVDGRTGLHPQDEQVGQYLRQSGKEVRVLVNKVDGP 127 Query: 125 IAQRNF-YEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + YSL F + +SA H G +L EMIE Sbjct: 128 EQEETLAADFYSLGFP-LQCVSASHGFGMGDLR----------------EMIE------- 163 Query: 184 SPKENITSEGKSSVKNISKP---LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 T+ K +N+ +P L+IA++GRPN GKS+ IN LLG RL+ +++G TRD Sbjct: 164 ------TALPKDECENVEQPQGGLKIALLGRPNAGKSSTINALLGKKRLMVSAEAGTTRD 217 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 V ++ DTAG+R+ S++ +SLE +V SMQ+ + + +++LD Sbjct: 218 CVDVTVQRGGKTYTFVDTAGVRRKSKVIDSLEYFSVVHSMQAAKQADVVVLVLDIMDGVV 277 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVS-DKLNLLQDLRTKAIKNLPQIGDIYINTISGR 359 QD R++ + V+ +NK D++S D+L + + +Y +++S Sbjct: 278 GQDKRLLSFLDTEKVPFVIVVNKIDLLSKDQLAKTKKDLVDQFAFCAHVPVLYSSSVSMA 337 Query: 360 TGEGLDDLMVSVLEINKLWK---TRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQI 416 GL L I KLW+ R+TT LN ++ ++ PP + R ++ Y+TQ Sbjct: 338 GLGGLLPL------IEKLWEQCGQRVTTGELNRLVKMVTERHQPPVMGGRRGKIYYMTQA 391 Query: 417 QSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 S PP+F+ F SY RYL N+LR F + PIRM F+SS + Sbjct: 392 DSRPPTFVFFVNDEKLFHGSYVRYLENQLRKVFRMDKTPIRMVFRSSHD 440 >gi|306829944|ref|ZP_07463131.1| ribosome-associated GTPase EngA [Streptococcus mitis ATCC 6249] gi|304427955|gb|EFM31048.1| ribosome-associated GTPase EngA [Streptococcus mitis ATCC 6249] Length = 436 Score = 227 bits (579), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 140/466 (30%), Positives = 246/466 (52%), Gaps = 39/466 (8%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AIVG PNVGKSTLFNR+ +++++V + G+TRDR+Y F+++DT GI D Sbjct: 5 TVAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRSFSMIDTGGI-DD 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + +Q+ Q E+A+ EA +I+F++ K GIT D + L K P+I+ NK+D Sbjct: 64 VDAPFMEQIKHQAEIAMEEADVIVFVVSGKEGITDADEYVARKLYKTLKPVILAVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + ++ Y+L E + IS+ H +GT ++ I + N P E+ EE Sbjct: 124 PEMRNDIFDFYALGLGEPLPISSVHGIGTGDVLDAIVE-------NLPHEV------EEE 170 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 +P ++ +++GRPNVGKS+LIN +LG +R++ +G TRD++ Sbjct: 171 NP----------------DVIKFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAID 214 Query: 244 ISW-NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + + + DTAGMRK ++ E+ E+ +V ++M+++ + +++L+A + Sbjct: 215 THFTDADGQEFTMIDTAGMRKSGKVYENTEKYSVMRAMRAIDRSDVVLMVLNAEEGIREY 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDK----LNLLQDLRTKAIKNLPQIGDIYINTISG 358 D RI G +++ +NKWD + N +D+R + + LP ++++ + Sbjct: 275 DKRIAGFAHEAGKGMIIVVNKWDTLEKDNHTMKNWEEDIREQ-FQYLPYAPIVFVSAL-- 331 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 T + L L + +I++ TRI ++ LN + NP PT + ++ Y TQ+ + Sbjct: 332 -TKQRLHKLPEMIKQISESQNTRIPSAVLNDVIMDAIAINPTPTDKGKRLKIFYATQVAT 390 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 PP+F+IF + SY R+L N++R F G PI + + K Sbjct: 391 KPPTFVIFVNEEELMHFSYLRFLENQIRKAFVFEGTPIHLIARKRK 436 >gi|167747191|ref|ZP_02419318.1| hypothetical protein ANACAC_01905 [Anaerostipes caccae DSM 14662] gi|317473608|ref|ZP_07932897.1| ribosome-associated GTPase EngA [Anaerostipes sp. 3_2_56FAA] gi|167654151|gb|EDR98280.1| hypothetical protein ANACAC_01905 [Anaerostipes caccae DSM 14662] gi|316898898|gb|EFV20923.1| ribosome-associated GTPase EngA [Anaerostipes sp. 3_2_56FAA] Length = 440 Score = 227 bits (579), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 137/464 (29%), Positives = 234/464 (50%), Gaps = 35/464 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFN L + +++V + PG+TRDR+Y F ++DT GI Sbjct: 6 VAIVGRPNVGKSTLFNALAGENISIVKDTPGVTRDRIYADISWLNYNFTLIDTGGIEPDS 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 I +M +Q ++AI A +I+FL+D + G+ D + LR+ P+++ NK D Sbjct: 66 GDVILSRMREQAQIAIETADVIIFLVDVRQGLVDADFQVADMLRRSQKPVVLAVNKADNY 125 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + YE Y+L + +SA LG +L E++EN Sbjct: 126 EKFLPDTYEFYNLGLGDPHPVSANSKLGFGDLLD---------------EVVENCDPKAL 170 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 +E+ +P +IA++G+PN GKS++IN++LG R++ +G TRD++ Sbjct: 171 EEEED------------ERP-KIAIIGKPNAGKSSIINKMLGEERVIVSDVAGTTRDAID 217 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 DTAG+R+ ++I E LE+ +V +++ +V C+ ++++DAT +QD Sbjct: 218 TVIQKNGKEYVFIDTAGLRRKNKIKEDLERYSVIRTVSAVERCDVAVLVIDATEGITEQD 277 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 +I G +++A+NKWD+V + K + L + + IS +TG+ Sbjct: 278 AKIAGIAHERGKGMIIAVNKWDLVEKDDKTIYKFTNKIREVLAYMSYAELVFISAKTGQR 337 Query: 364 LD---DLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 D++ +V+E + + R+ T LN L + PP+ + +L Y+TQ+ P Sbjct: 338 FPKIFDMLDAVIENHAM---RVQTGVLNEILTEAVAMKQPPSDKGKRLKLYYMTQVSVKP 394 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 P+F++F + SY RY+ N++R F G PI + + K Sbjct: 395 PTFVVFINDRQLMHFSYTRYIENQIRNTFGFRGTPIHIIARERK 438 >gi|21909785|ref|NP_664053.1| GTP-binding protein EngA [Streptococcus pyogenes MGAS315] gi|28896522|ref|NP_802872.1| GTP-binding protein EngA [Streptococcus pyogenes SSI-1] gi|26006710|sp|Q8K8J8|DER_STRP3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|21903970|gb|AAM78856.1| putative phosphoglycerate dehydrogenase [Streptococcus pyogenes MGAS315] gi|28811776|dbj|BAC64705.1| putative phosphoglycerate dehydrogenase [Streptococcus pyogenes SSI-1] Length = 436 Score = 227 bits (579), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 138/467 (29%), Positives = 244/467 (52%), Gaps = 41/467 (8%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AIVG PNVGKSTLFNR+ +++++V + G+TRDR+Y F+++DT GI D Sbjct: 5 TVAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRQFSLIDTGGI-DD 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + +Q+ Q ++A+ EA +I+F++ K G+T D ++ L + N P+I+ NK+D Sbjct: 64 VDAPFMEQIKHQAQIAMEEADVIVFVVSGKEGVTDADEYVSKILYRTNTPVILAVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + Y+ YSL + +S+ H +GT ++ I + N P+E E N Sbjct: 124 PEMRNDIYDFYSLGLGDPYPVSSVHGIGTGDVLDAIVE-------NLPVEEAEEN----- 171 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 +R +++GRPNVGKS+LIN +LG +R++ +G TRD++ Sbjct: 172 -----------------DDIIRFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAID 214 Query: 244 ISW-NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + + + DTAGMRK +I E+ E+ +V ++M+++ + +++++A + Sbjct: 215 THFTDADGQEFTMIDTAGMRKSGKIYENTEKYSVMRAMRAIDRSDVVLMVINAEEGIREY 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLL-----QDLRTKAIKNLPQIGDIYINTIS 357 D RI G +++ +NKWD + DK N D+R + + L I+++ ++ Sbjct: 275 DKRIAGFAHEAGKGMIIVVNKWDAI-DKDNHTVAKWEADIRDQ-FQFLTYAPIIFVSALT 332 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 + L DL + I++ RI ++ LN + NP PT + ++ Y TQ+ Sbjct: 333 KQRLNKLPDL---IKRISESQNKRIPSAVLNDVIMDAIAINPTPTDKGKRLKIFYATQVS 389 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 PP+F++F + SY R+L N++R F+ G PI + + K Sbjct: 390 VKPPTFVVFVNEEELMHFSYLRFLENQIRAAFTFEGTPIHLIARKRK 436 Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 39/132 (29%), Positives = 67/132 (50%), Gaps = 17/132 (12%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRL---YGQAIINGVIFNIVDTA 58 I +++G PNVGKS+L N ++ + + G TRD + + A +G F ++DTA Sbjct: 174 IIRFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTHFTDA--DGQEFTMIDTA 231 Query: 59 GI-------ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKN 111 G+ + + S+ + M AI+ + ++L +I+++ GI YD I F + Sbjct: 232 GMRKSGKIYENTEKYSVMRAMR-----AIDRSDVVLMVINAEEGIREYDKRIAGFAHEAG 286 Query: 112 IPIIIVSNKMDT 123 +IIV NK D Sbjct: 287 KGMIIVVNKWDA 298 >gi|313680391|ref|YP_004058130.1| ribosome-associated GTPase enga [Oceanithermus profundus DSM 14977] gi|313153106|gb|ADR36957.1| ribosome-associated GTPase EngA [Oceanithermus profundus DSM 14977] Length = 433 Score = 227 bits (579), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 132/463 (28%), Positives = 239/463 (51%), Gaps = 38/463 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + IVG PNVGKS+L+NRL+ ++ AVV + G+TRD F +VDT G+ G Sbjct: 4 VVIVGRPNVGKSSLYNRLLGRRDAVVADEAGVTRDLKEAVVETERGKFKLVDTGGLWSGD 63 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 ++ ++ + A+ EA L+LFL+D +A + D+ + +LR+KN P+ +V+ K+D Sbjct: 64 AWE--PKIKEKVDRALAEADLVLFLVDGRAELAQADYEVADYLRRKNKPVRLVATKVDHP 121 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + E+Y+L F + + S EH G EL I+ Sbjct: 122 KHEAYLGELYALGFGDPIPTSVEHRRGLEELEDAIWAAL--------------------- 160 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P E EG++ V+ P+RIA++GRPN GKS+L+N +LG +R++ Q G TRDS+ + Sbjct: 161 PAE----EGETEVE--VPPIRIAIIGRPNAGKSSLLNAILGEDRVIVSDQPGTTRDSIDV 214 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE--KQ 302 ++ + DTAG+RK R ++E ++++ + ++ + ++ +D PFE + Sbjct: 215 ELDYGGTRFVLVDTAGIRK--RPETAVEHFAIQRAHRVIQEADVAVLAVD---PFELGDR 269 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 +L++ + + G V+LA+ KWD V + ++R + + L + + I S TG+ Sbjct: 270 ELKMANEALDAGKPVILAVTKWDAVPKEER--PEVRRQIREKLAHLEHLPIVYTSAATGQ 327 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 + + + + R T+ LN W+Q + P R ++ ++TQ + +PP Sbjct: 328 NIHKIFQLATRLYHKARERFDTADLNRWVQVWLTKTRVPNFRGRPLKIFFVTQPEVAPPL 387 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 F+ F P+ + +++ Y+ NR+R + L +P R+ ++ K Sbjct: 388 FVFFVNQPDFVTRAFENYIKNRIREDLDLREVPFRLAWRGRKG 430 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 4/121 (3%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP 264 ++ +VGRPNVGKS+L NRLLG + ++G+TRD + ++ DT G+ Sbjct: 3 KVVIVGRPNVGKSSLYNRLLGRRDAVVADEAGVTRDLKEAVVETERGKFKLVDTGGLWS- 61 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 ++ E K +K +++ + + L+D + D + D + V L K Sbjct: 62 ---GDAWEPKIKEKVDRALAEADLVLFLVDGRAELAQADYEVADYLRRKNKPVRLVATKV 118 Query: 325 D 325 D Sbjct: 119 D 119 >gi|195978761|ref|YP_002124005.1| GTP-binding protein EngA [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195975466|gb|ACG62992.1| GTP-binding protein EngA [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 446 Score = 227 bits (579), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 135/462 (29%), Positives = 237/462 (51%), Gaps = 31/462 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AIVG PNVGKSTLFNR+ +++++V + G+TRDR+Y F+++DT GI D Sbjct: 15 TVAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTTGEWLNRQFSLIDTGGI-DD 73 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + +Q+ Q +A++EA +I+F++ K G+T D ++ L + N P+I+V NK+D Sbjct: 74 VDAPFMEQIKHQAHIAMDEADVIVFVVSGKEGVTDADEYVSKLLYRTNKPVILVVNKVDN 133 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + Y+ YSL + +S+ H +GT ++ I N P+E I N Sbjct: 134 PEMRNDIYDFYSLGLGDPFPVSSVHGIGTGDVLDAIID-------NLPVEEIVEN----- 181 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 +R +++GRPNVGKS+LIN +LG R++ +G TRD++ Sbjct: 182 -----------------DDVIRFSLIGRPNVGKSSLINAILGEERVIASPVAGTTRDAID 224 Query: 244 ISW-NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 S+ + + DTAGMRK ++ E+ E+ +V ++M+++ + +++++A Sbjct: 225 TSFTDESGQAYTMIDTAGMRKSGKVYENTEKYSVMRAMRAIDRSDIVLMVINAEEGIRDY 284 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D RI G +++ +NKWD + + + + I +S T + Sbjct: 285 DKRIAGFAHEAGKGMIIVVNKWDTIEKDNHTVARWEADIRDQFQFLTYAPIIFVSAVTKQ 344 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 L+ L + I+ RI+++ LN + NP PT R ++ Y TQ+ PP+ Sbjct: 345 RLNRLPELIKRISDSQSQRISSAVLNDVIMDAIAINPTPTDKGRRLKIFYATQVSVKPPT 404 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 F++F + SY R+L N++R F+ G PI++ ++ K Sbjct: 405 FVVFVNEEELMHFSYLRFLENQIRAAFTFEGTPIKLIARNRK 446 >gi|307128641|ref|YP_003880671.1| GTP-binding protein EngA [Candidatus Sulcia muelleri CARI] gi|306483103|gb|ADM89973.1| GTP-binding protein EngA [Candidatus Sulcia muelleri CARI] Length = 436 Score = 227 bits (578), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 154/460 (33%), Positives = 246/460 (53%), Gaps = 33/460 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 ++IVG NVGKSTLFNRL+ + ++V G+TRDR YG NG+ F ++DT G + Sbjct: 5 VSIVGRSNVGKSTLFNRLIGYRKSIVNYKSGVTRDRNYGFCNWNGIEFCLIDTGGYTNKS 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 K++ +Q A+ E+ ++LFL+D I D+ I+ L K I +V NK+D Sbjct: 65 ENIFEKKICEQFFFALEESDILLFLVDPSNDILGIDYDISKILLKLKKIIYLVINKIDLS 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + N L IS+ + GT EL I IF++ N Sbjct: 125 KNRYNTSNFLKLGISNTYCISSINGTGTGELLDSIVSIFRKYDLN--------------- 169 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 KN K RIA+VGRPNVGKSTLIN LL N+ + + SG TRDS+ + Sbjct: 170 -------------KNKKKIPRIAIVGRPNVGKSTLINTLLNKNQNIVTNISGTTRDSIDV 216 Query: 245 SWNWKNHPIE--IFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 +K IE + DTAG+RK +I E++E +V ++++S++ + ++++D FE Q Sbjct: 217 F--YKKFGIECILVDTAGIRKKKKIKENIEFYSVMRAIKSIQNSDVCLLIIDIKSGFESQ 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMV-SDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTG 361 D+ I + N +V+ +NKWD + ++ NL + + K + D+ I S T Sbjct: 275 DMNIFKIIENNNKGIVILINKWDFIKKNEKNLSINYEKEIKKKITPFNDVPIFFTSSFTK 334 Query: 362 EGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 + + + + ++I+ K +I TS LN + +NPPP+I +Y ++KY +QI + P Sbjct: 335 KNIIKSIKTAVKISFNLKLKIKTSLLNKIILPILYKNPPPSINGKYIKIKYCSQIPTYNP 394 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 F+ F +PN I E+YKR++ N++R F+ +GIPI++ F+ Sbjct: 395 QFIFFTNYPNFIKETYKRFIENKIREKFNFTGIPIKILFR 434 >gi|229815385|ref|ZP_04445720.1| hypothetical protein COLINT_02432 [Collinsella intestinalis DSM 13280] gi|229809165|gb|EEP44932.1| hypothetical protein COLINT_02432 [Collinsella intestinalis DSM 13280] Length = 445 Score = 227 bits (578), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 145/472 (30%), Positives = 243/472 (51%), Gaps = 38/472 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL NR+ + A+V G+TRDR Y A NG F +VDT GI K Sbjct: 6 VAIVGRPNVGKSTLVNRIAQTSDAIVHQSRGVTRDRSYHVADWNGREFMLVDTGGIEPMK 65 Query: 65 NCSI-AKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + + A + DQ A EA +ILF++D G T D ++ +RK P ++ NK+D Sbjct: 66 SDDVFATSIRDQALAAAEEAAVILFVVDGSVGATEEDESVARMVRKLKKPTFLLVNKLDN 125 Query: 124 RIAQRN-FYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 + + +E YSL + V +SA H GT +L + + E+ + Sbjct: 126 PARENDSLWEFYSLGVGDPVAVSALHGHGTGDLLDEVVSLLP-----------EDAGDED 174 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 + P LR+A++GRPN GKS+L N+++G +R + + +G TRD++ Sbjct: 175 DEP----------------DTLRVAIIGRPNAGKSSLFNKMIGNDRSIVSNIAGTTRDAI 218 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + DTAG+RK S + E++E ++ + ++++ + ++++DA+ +Q Sbjct: 219 DTVVERDGKRYRMVDTAGIRKKSTVYENIEYYSMVRGLRAIDRADVALLVVDASAGVTEQ 278 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRT--KAIKNLPQIGDIYINTISGRT 360 D ++ + G A+V+ LNKWD++ D + T + + P + I+ ++GR+ Sbjct: 279 DQKVANLAIERGCALVVLLNKWDLLKDDYEREAVMETVDRRLTMAPWAEYLRISAMTGRS 338 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLK--YITQIQS 418 + D++ + E + ITTS LN L T ++ T+ + RLK Y+TQ Sbjct: 339 VHKIWDMVDAAAERR---ASHITTSQLNKLL--TDMREFGHTVSDGKRRLKMHYVTQTGE 393 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 PP+F F + + ++YKRY+ NR+R F G PIR+ F++ K+ K+ Sbjct: 394 KPPAFTFFVNHTDLVSDNYKRYIENRMRATFDFKGTPIRLRFRAKKSDKDKE 445 >gi|261416631|ref|YP_003250314.1| ribosome-associated GTPase EngA [Fibrobacter succinogenes subsp. succinogenes S85] gi|261373087|gb|ACX75832.1| ribosome-associated GTPase EngA [Fibrobacter succinogenes subsp. succinogenes S85] gi|302326129|gb|ADL25330.1| ribosome-associated GTPase EngA [Fibrobacter succinogenes subsp. succinogenes S85] Length = 475 Score = 227 bits (578), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 144/463 (31%), Positives = 236/463 (50%), Gaps = 39/463 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAG-IADG 63 + I+G PNVGKS+LFNR++ ++ AVV + G+TRDR Y AI G F +VDT G + D Sbjct: 6 VCIIGRPNVGKSSLFNRILGRRAAVVSDRDGVTRDRHYQNAIYKGHEFTVVDTGGFLPDD 65 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 +A + Q A+NEA L+LF++D + GIT D +RK + +I+V+NK + Sbjct: 66 SIDVLADSVRAQIFNAVNEADLVLFMVDIRVGITKLDQQFARLIRKLDKKVILVANKSEL 125 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + ++ YE L F + +SA L + + P+ +R EE Sbjct: 126 QGDRQESYEFLKLGFGQPRTVSALTGYACLSLLDEVVSVLPT-----PV----RGERREE 176 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 +P+R A++GRPN GKSTL+NRLL +R + G TRDS+ Sbjct: 177 ------------------RPVRFAILGRPNAGKSTLLNRLLNEDRAVVSDIPGTTRDSID 218 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + + DTAG+RK +R+ + +E + ++++S+R + +++++D T E QD Sbjct: 219 CDFVVDGQKFVVTDTAGLRKKARVEDEVEVFSNMRTLESIRRSDLSVLVVDCTRGMEIQD 278 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKA-IKNLPQIGDIYINTISGRTGE 362 RI+ + G +V+ LNKWD++ +K + D K ++ P + + I +IS + G+ Sbjct: 279 YRIITEIRKAGKGLVVVLNKWDILPNKNDKSFDHMVKELLEREPMLEFVPILSISAKEGQ 338 Query: 363 GLDDLMVSVLEI-----NKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 + ++ ++ + L + R+ S+ N +LQ + PP+ R L QI Sbjct: 339 RVGRVIQAIQTVYANCRRVLGRDRVAESFAN-FLQ----EKAPPSHNGRVVMLTRACQIM 393 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCF 460 PP I P + ESYKRYL+ + F L G P+R+ F Sbjct: 394 VEPPVIDIETRTPELVDESYKRYLLKKFYDEFQLQGAPLRLNF 436 >gi|225570488|ref|ZP_03779513.1| hypothetical protein CLOHYLEM_06589 [Clostridium hylemonae DSM 15053] gi|225160685|gb|EEG73304.1| hypothetical protein CLOHYLEM_06589 [Clostridium hylemonae DSM 15053] Length = 442 Score = 227 bits (578), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 138/465 (29%), Positives = 237/465 (50%), Gaps = 35/465 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFN L + +++V + PG+TRDR+Y + F ++DT GI Sbjct: 6 VAIVGRPNVGKSTLFNVLAGEMISIVKDTPGVTRDRIYAEVSWLDKEFTLIDTGGIEPES 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 I QM +Q ++AI+ A +I+F+ D + G+ D + LR+ P+++V NK+D+ Sbjct: 66 KDVILSQMREQAQIAIDTADVIVFITDVRQGLVDSDSKVADMLRRSGKPVVLVVNKVDSF 125 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + YE Y+L + V +SA LG ++ + + F + Sbjct: 126 DKFMPDVYEFYNLGIGDPVPVSAASRLGIGDMLERVAQFFPEH----------------- 168 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 S ++ +P RIA+VG+PNVGKS+++N+LLG R++ +G TRD++ Sbjct: 169 ----------SSEEEDDERP-RIAIVGKPNVGKSSIVNKLLGEQRVIVSDVAGTTRDAID 217 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 DTAG+R+ S+I E LE+ ++ +++ +V + +V++DA +QD Sbjct: 218 TEIIHGGREYVFIDTAGLRRKSKIKEELERYSIIRTVTAVERADVVLVVIDAAEGVTEQD 277 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVS--DKLNLLQDLRTKAIKN-LPQIGDIYINTISGRT 360 +I G +++ +NKWD + DK + R + + + +P +Y++ +G+ Sbjct: 278 AKIAGIAHERGKGIIIVVNKWDAIEKNDKTMREYEHRVRQVLSFMPYAEIMYVSAETGQR 337 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 L D++ V+E L R+ T LN + + PP+ + +L YITQ+ P Sbjct: 338 LNKLYDMIDMVIENQTL---RVATGVLNEIMTEAVAMQQPPSDKGKRLKLYYITQVSVKP 394 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 P+F+IF + SY RYL N++R F G ++ + K Sbjct: 395 PTFVIFVNDKELMHFSYTRYLENKIREAFGFKGTSLKFFIRERKE 439 >gi|239932165|ref|ZP_04689118.1| GTP-binding protein EngA [Streptomyces ghanaensis ATCC 14672] gi|291440533|ref|ZP_06579923.1| GTP-binding protein EngA [Streptomyces ghanaensis ATCC 14672] gi|291343428|gb|EFE70384.1| GTP-binding protein EngA [Streptomyces ghanaensis ATCC 14672] Length = 496 Score = 227 bits (578), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 142/462 (30%), Positives = 232/462 (50%), Gaps = 40/462 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD-- 62 +A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ +A G F +VDT G Sbjct: 61 LAVVGRPNVGKSTLVNRIIGRREAVVEDKPGVTRDRVTYEAEWAGRRFKVVDTGGWEQDV 120 Query: 63 -GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 G + S+A Q E AI A ++F++D+K G T D A+ LRK P+++ +NK+ Sbjct: 121 LGIDASVAA----QAEYAIEAADAVVFVVDAKVGATDTDEAVVRLLRKAGKPVVLCANKV 176 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D + + ++SL E +SA H GT ++ + ++ P+ P + Sbjct: 177 DGPSGEADAAYLWSLGLGEPYPVSALHGRGTGDMLDQVLEVL----PDAPAQTFGT---- 228 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 + P R+A++GRPNVGKS+L+N++ G R++ +G TRD Sbjct: 229 -----------------AVGGPRRVALIGRPNVGKSSLLNKVAGEERVVVNELAGTTRDP 271 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 V + DTAG+RK + + + ++ +V E +VL+DA Sbjct: 272 VDEMIELGGKTWKFVDTAGIRKRVHLQQGADYYASLRTAAAVEKAEVAVVLIDAAESISV 331 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVSD--KLNLLQDLRTKAIKNLPQIGDIYINTISGR 359 QD RIV G A+VLA NKWD + + + L +++ T+ L Q+ +S R Sbjct: 332 QDQRIVTMAVEAGRALVLAFNKWDTLDEERRYYLEREIETE----LGQVVWAPRVNVSAR 387 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 TG ++ L+ ++ W+TR+ T LN++L + +P P + R+ + TQ + Sbjct: 388 TGRHMEKLVPAIETALAGWETRVPTGRLNAFLGELVAAHPHPVRGGKQPRILFGTQAGTK 447 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 PP F++F + I Y+R++ RLR F G PI + + Sbjct: 448 PPRFVLFAS--GFIEAGYRRFIERRLREEFGFEGTPIHISVR 487 >gi|124023844|ref|YP_001018151.1| GTP-binding protein EngA [Prochlorococcus marinus str. MIT 9303] gi|123964130|gb|ABM78886.1| GTP-binding protein (HSR1-related) [Prochlorococcus marinus str. MIT 9303] Length = 461 Score = 227 bits (578), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 135/469 (28%), Positives = 236/469 (50%), Gaps = 42/469 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKSTL NRL + + A+V + PG+TRDR Y F +VDT G+ Sbjct: 12 VAIIGRPNVGKSTLVNRLCRSREAIVDDKPGVTRDRTYQDGFWGDREFKVVDTGGLVFDD 71 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM--- 121 + ++ +Q LA+ EA + L ++D + G+T D +I +LR + P ++ NK Sbjct: 72 DSEFLPEIREQANLALAEASVALVIVDGQQGVTAADESIAEWLRMQPCPTLVAVNKCESP 131 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D +A E + L E ISA H GT +L + + K+ Sbjct: 132 DQGLAM--AAEFWRLGLGEPFPISAIHGAGTGDLLDRVLSLLPPKH-------------- 175 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 EE+ ++ +P+++A++GRPNVGKS+L+N + G R + G TRD+ Sbjct: 176 EEAEED--------------EPIQMAIIGRPNVGKSSLLNAICGEPRAIVSPIRGTTRDT 221 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 + + HP + DTAG+R+ + E + +S +++ + ++++DA + Sbjct: 222 IDTRLEREGHPWRLIDTAGIRRRRSVNYGPEFFGINRSFKAIERSDVCVLVIDALDGVTE 281 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLL----QDLRTKAIKNLPQIGDIYINTIS 357 QD R+ + + G A VL +NKWD V + + ++LR K + L ++ + ++ Sbjct: 282 QDQRLAGRIEDDGRACVLVVNKWDAVEKDSHTMPMVEKELRAK-LYFLDWATMLFTSALT 340 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKT-QLQNPPPTIFNRYNRLKYITQI 416 G+ E + L +E + + R++TS +N L++ ++PP + R RL Y TQ+ Sbjct: 341 GQRVESIFALAALAVEQH---RRRVSTSVVNEVLKEALSWRSPPTSRGGRQGRLYYGTQV 397 Query: 417 QSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 S PPSF +F P ++Y+RY+ +LR G P+++ ++ + Sbjct: 398 ASRPPSFTLFVNDPKLFGDTYRRYVERQLREGLGFDGTPLKLFWRGKQQ 446 >gi|26006737|sp|Q9EWW8|DER_STRCO RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA Length = 465 Score = 227 bits (578), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 143/478 (29%), Positives = 240/478 (50%), Gaps = 54/478 (11%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD-- 62 +A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ +A G F +VDT G Sbjct: 29 LAVVGRPNVGKSTLVNRIIGRREAVVEDKPGVTRDRVTYEAEWAGRRFKVVDTGGWEQDV 88 Query: 63 -GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 G + S+A Q E AI A ++F++D+K G T D A+ LRK P+++ +NK+ Sbjct: 89 LGIDASVAA----QAEYAIEAADAVVFVVDAKVGATDTDEAVVRLLRKAGKPVVLCANKV 144 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D + + ++SL E +SA H GT ++ + + Sbjct: 145 DGPSGEADASYLWSLGLGEPQPVSALHGRGTGDMLDRVLEALP----------------- 187 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 E+P + + + P RIA++GRPNVGKS+L+N++ G +R++ +G TRD Sbjct: 188 -EAPAQTFGT-------AVGGPRRIALIGRPNVGKSSLLNKVAGEDRVVVNELAGTTRDP 239 Query: 242 V-------SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLD 294 V ++W + DTAG+RK + + + ++ +V E ++L+D Sbjct: 240 VDELIELGGVTWKF-------VDTAGIRKRVHLQQGADYYASLRTAAAVEKAEVAVILVD 292 Query: 295 ATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSD--KLNLLQDLRTKAIKNLPQIGDIY 352 A+ QD RIV G A+V+A NKWD + + + L +++ T+ L Q+ Sbjct: 293 ASESISVQDQRIVTMAVEAGRAIVVAYNKWDTLDEERRYYLEREIETE----LGQVAWAP 348 Query: 353 INTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKY 412 +S +TG ++ L+ ++ W+TR+ T LN++L + +P P + R+ + Sbjct: 349 RVNVSAQTGRHMEKLVPAIETALAGWETRVPTGRLNAFLGELAAAHPHPVRGGKQPRILF 408 Query: 413 ITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 TQ + PP F++F + I Y+R++ RLR F G PI + + + KK Sbjct: 409 GTQAGTKPPRFVLFAS--GFIEAGYRRFIERRLREEFGFEGTPIHISVRVREKRGAKK 464 >gi|171920931|ref|ZP_02932078.1| GTP-binding protein EngA [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|225550855|ref|ZP_03771804.1| GTP-binding protein EngA [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|171903162|gb|EDT49451.1| GTP-binding protein EngA [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|225380009|gb|EEH02371.1| GTP-binding protein EngA [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 442 Score = 227 bits (578), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 139/464 (29%), Positives = 247/464 (53%), Gaps = 37/464 (7%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAIVG PNVGKS+LFNR++ ++ ++V + PG+TRDR+Y F ++DT GI Sbjct: 3 TIAIVGKPNVGKSSLFNRILMRRKSIVDDQPGVTRDRIYDVGNWLTRDFMLIDTGGIISS 62 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKK--NIPIIIVSNKM 121 ++ + +N+Q AINEA+ I+FL+ +K GI D I L++K + +I+V NK+ Sbjct: 63 ED-TYQDNINEQVLFAINEANTIIFLVSAKDGINNDDKKIAKMLKEKAKDKKVILVVNKV 121 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLE-MIENNKR 180 ++ N E+YS F + +ISAEH +G +L + K + P++ +E +R Sbjct: 122 ESEKYYFNEGELYSFGFGKFFKISAEHGIGMGDLLDELVK-------DMPIQNALEQQER 174 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 + ++GRPNVGKS+L N +LG R++ ++G TRD Sbjct: 175 -----------------------FKFCIIGRPNVGKSSLTNTILGEQRMIVNPEAGSTRD 211 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ +++ N I DTAG+R+ +I E++E+ V ++ +++ + +++LD + PF+ Sbjct: 212 SIDNDFSYHNKKYTIIDTAGVRRKGKIVEAVEKYAVLRTQKAIERSQLILLVLDGSEPFK 271 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKN-LPQIGDIYINTISGR 359 +QD + ++ ++ +NKWD + +K + ++ K I++ + I IS Sbjct: 272 EQDEVVGGLAYDANIPTIIVVNKWDNIVNKNSHTMEMVKKQIRSQFKYLSWAPIVFISAL 331 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQ-LQNPPPTIFNRYNRLKYITQIQS 418 + + + ++ + + ++ TS LN + K Q PPP R + + Y+ Q+QS Sbjct: 332 DNKRIHTIFETIELVREQAMRKVATSLLNDVVIKANAFQEPPPFKGGRIS-ISYVVQVQS 390 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 P+F++ C P + SY RY+ N +R F +PI + +Q Sbjct: 391 QIPTFVLKCNNPKFLHFSYARYIENEIRKAFGFDSVPITLYWQD 434 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/122 (32%), Positives = 61/122 (50%), Gaps = 2/122 (1%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI-A 61 + I+G PNVGKS+L N ++ ++ +V G TRD + + + I+DTAG+ Sbjct: 175 FKFCIIGRPNVGKSSLTNTILGEQRMIVNPEAGSTRDSIDNDFSYHNKKYTIIDTAGVRR 234 Query: 62 DGKNC-SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 GK ++ K +T+ AI + LIL ++D D + NIP IIV NK Sbjct: 235 KGKIVEAVEKYAVLRTQKAIERSQLILLVLDGSEPFKEQDEVVGGLAYDANIPTIIVVNK 294 Query: 121 MD 122 D Sbjct: 295 WD 296 >gi|15674498|ref|NP_268672.1| GTP-binding protein EngA [Streptococcus pyogenes M1 GAS] gi|19745453|ref|NP_606589.1| GTP-binding protein EngA [Streptococcus pyogenes MGAS8232] gi|50913661|ref|YP_059633.1| GTP-binding protein EngA [Streptococcus pyogenes MGAS10394] gi|56808746|ref|ZP_00366464.1| COG1160: Predicted GTPases [Streptococcus pyogenes M49 591] gi|71910101|ref|YP_281651.1| GTP-binding protein EngA [Streptococcus pyogenes MGAS5005] gi|94987918|ref|YP_596019.1| GTP-binding protein EngA [Streptococcus pyogenes MGAS9429] gi|94991802|ref|YP_599901.1| GTP-binding protein EngA [Streptococcus pyogenes MGAS2096] gi|209558845|ref|YP_002285317.1| GTP-binding protein EngA [Streptococcus pyogenes NZ131] gi|54037054|sp|P64065|DER_STRP8 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|54040977|sp|P64064|DER_STRP1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|68052093|sp|Q5XDR3|DER_STRP6 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|166225861|sp|Q1JDF1|DER_STRPB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|166225862|sp|Q1JNC4|DER_STRPC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|238058978|sp|B5XJW0|DER_STRPZ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|13621599|gb|AAK33393.1| putative phosphoglycerate dehydrogenase [Streptococcus pyogenes M1 GAS] gi|19747567|gb|AAL97088.1| putative phosphoglycerate dehydrogenase [Streptococcus pyogenes MGAS8232] gi|50902735|gb|AAT86450.1| GTP-binding protein [Streptococcus pyogenes MGAS10394] gi|71852883|gb|AAZ50906.1| GTP-binding protein [Streptococcus pyogenes MGAS5005] gi|94541426|gb|ABF31475.1| GTP-binding protein [Streptococcus pyogenes MGAS9429] gi|94545310|gb|ABF35357.1| GTP-binding protein [Streptococcus pyogenes MGAS2096] gi|209540046|gb|ACI60622.1| GTP-binding protein EngA [Streptococcus pyogenes NZ131] Length = 436 Score = 227 bits (578), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 138/467 (29%), Positives = 244/467 (52%), Gaps = 41/467 (8%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AIVG PNVGKSTLFNR+ +++++V + G+TRDR+Y F+++DT GI D Sbjct: 5 TVAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRQFSLIDTGGI-DD 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + +Q+ Q ++A+ EA +I+F++ K G+T D ++ L + N P+I+ NK+D Sbjct: 64 VDAPFMEQIKHQAQIAMEEADVIVFVVSGKEGVTDADEYVSKILYRTNTPVILAVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + Y+ YSL + +S+ H +GT ++ I + N P+E E N Sbjct: 124 PEMRNDIYDFYSLGLGDPYPVSSVHGIGTGDVLDAIVE-------NLPVEEAEEN----- 171 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 +R +++GRPNVGKS+LIN +LG +R++ +G TRD++ Sbjct: 172 -----------------DDIIRFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAID 214 Query: 244 ISW-NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + + + DTAGMRK +I E+ E+ +V ++M+++ + +++++A + Sbjct: 215 THFTDADGQEFTMIDTAGMRKSGKIYENTEKYSVMRAMRAIDRSDVVLMVINAEEGIREY 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLL-----QDLRTKAIKNLPQIGDIYINTIS 357 D RI G +++ +NKWD + DK N D+R + + L I+++ ++ Sbjct: 275 DKRIAGFAHEAGKGMIIVVNKWDTI-DKDNHTVAKWEADIRDQ-FQFLTYAPIIFVSALT 332 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 + L DL + I++ RI ++ LN + NP PT + ++ Y TQ+ Sbjct: 333 KQRLNKLPDL---IKRISESQNKRIPSAVLNDVIMDAIAINPTPTDKGKRLKIFYATQVS 389 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 PP+F++F + SY R+L N++R F+ G PI + + K Sbjct: 390 VKPPTFVVFVNEEELMHFSYLRFLENQIRAAFTFEGTPIHLIARKRK 436 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 68/132 (51%), Gaps = 17/132 (12%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRL---YGQAIINGVIFNIVDTA 58 I +++G PNVGKS+L N ++ + + G TRD + + A +G F ++DTA Sbjct: 174 IIRFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTHFTDA--DGQEFTMIDTA 231 Query: 59 GI-------ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKN 111 G+ + + S+ + M AI+ + ++L +I+++ GI YD I F + Sbjct: 232 GMRKSGKIYENTEKYSVMRAMR-----AIDRSDVVLMVINAEEGIREYDKRIAGFAHEAG 286 Query: 112 IPIIIVSNKMDT 123 +IIV NK DT Sbjct: 287 KGMIIVVNKWDT 298 >gi|159037544|ref|YP_001536797.1| small GTP-binding protein [Salinispora arenicola CNS-205] gi|189037157|sp|A8LYU3|DER_SALAI RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|157916379|gb|ABV97806.1| small GTP-binding protein [Salinispora arenicola CNS-205] Length = 467 Score = 227 bits (578), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 153/462 (33%), Positives = 238/462 (51%), Gaps = 35/462 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI-ADG 63 +A+VG PNVGKSTL NRL+ ++ AVV + PG+TRDR+ A NG F +VDT G D Sbjct: 27 VAVVGRPNVGKSTLVNRLIGRRQAVVEDVPGVTRDRVPYDAQWNGRQFAVVDTGGWEPDA 86 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 K+ + A Q E A+ A ++LF++D+ G T D + LR+ P+I+V+NK D Sbjct: 87 KDRAAAIAA--QAETAVTTADVVLFVVDAVVGATDVDESAVKMLRRSAKPVILVANKADN 144 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + ++SL E +SA H G+ EL VI + P P ++IE+ R Sbjct: 145 SSIEMEAATLWSLGLGEPYPVSALHGRGSGELLDVIM----DRLPEAP-KIIEDRPRG-- 197 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 P R+A+VGRPNVGKS+L+NR G R + + +G T D V Sbjct: 198 -------------------PRRVALVGRPNVGKSSLLNRFSGEVRAVVDAVAGTTVDPVD 238 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 ++ DTAG+RK E ++ ++ E +VLLDA+ +QD Sbjct: 239 SLVEIGGEAWQLVDTAGLRKRVGKASGTEYYASLRTASAIEAAEVAVVLLDASEVISEQD 298 Query: 304 LRIVDSVFNTGHAVVLALNKWDMV-SDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 RI+ V + G A+V+A NKWD+V +D+ L + ++ +P I +N +S +TG Sbjct: 299 QRILSMVTDAGRALVIAFNKWDLVDADRRYYLDREIERELRRIPWA--IRLN-LSAKTGR 355 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 +D L ++ + W+TR+ T+ LN+WL P P R ++ + TQ ++PP Sbjct: 356 AVDKLAPALRKALASWETRVPTAQLNAWLTALVQATPHPVRGGRAPKILFATQAGAAPPR 415 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 F++F + P + Y+R++ +LR F G PI + + K Sbjct: 416 FVLFTSGP--LDAGYQRFVERKLREEFGFEGSPIEIAVRPRK 455 >gi|77405817|ref|ZP_00782901.1| GTP-binding protein, Era/ThdF family [Streptococcus agalactiae H36B] gi|77414237|ref|ZP_00790399.1| GTP-binding protein, Era/ThdF family [Streptococcus agalactiae 515] gi|77159726|gb|EAO70875.1| GTP-binding protein, Era/ThdF family [Streptococcus agalactiae 515] gi|77175604|gb|EAO78389.1| GTP-binding protein, Era/ThdF family [Streptococcus agalactiae H36B] gi|319745628|gb|EFV97929.1| ribosome-associated GTPase EngA [Streptococcus agalactiae ATCC 13813] Length = 436 Score = 227 bits (578), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 136/462 (29%), Positives = 240/462 (51%), Gaps = 31/462 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AIVG PNVGKSTLFNR+ +++++V + G+TRDR+Y F+++DT GI D Sbjct: 5 TVAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTTGEWLNRKFSLIDTGGI-DD 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + +Q+ Q ++A+ EA +I+F++ K G+T D ++ L K N P+I+ NK+D Sbjct: 64 VDAPFMEQIKHQADIAMTEADVIVFVVSGKEGVTDADEYVSRILYKTNKPVILAVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + Y+ YSL + +S+ H +GT ++ I + N P+E EE Sbjct: 124 PEMRNDIYDFYSLGLGDPYPLSSVHGIGTGDILDAIVE-------NLPVE--------EE 168 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 + +I +R +++GRPNVGKS+LIN +LG +R++ +G TRD++ Sbjct: 169 NENPDI--------------IRFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAID 214 Query: 244 ISW-NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 ++ + + + DTAGMRK ++ E+ E+ +V +SM+++ + +++++A + Sbjct: 215 TNFVDSQGQEYTMIDTAGMRKSGKVYENTEKYSVMRSMRAIDRSDVVLMVINAEEGIREY 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D RI G +++ +NKWD + + + N + I +S T + Sbjct: 275 DKRIAGFAHEAGKGIIIVVNKWDTIEKDNHTVSQWEADIRDNFQFLSYAPIIFVSAETKQ 334 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 L L + I++ RI ++ LN + NP PT + ++ Y TQ+ PP+ Sbjct: 335 RLHKLPDMIKRISESQNKRIPSAVLNDVIMDAIAINPTPTDKGKRLKIFYATQVAVKPPT 394 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 F++F + SY R+L N++R F G PI + + K Sbjct: 395 FVVFVNEEELMHFSYLRFLENQIREAFVFEGTPINLIARKRK 436 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 39/130 (30%), Positives = 67/130 (51%), Gaps = 13/130 (10%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIIN-GVIFNIVDTAGI 60 I +++G PNVGKS+L N ++ + + G TRD + + + G + ++DTAG+ Sbjct: 174 IIRFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTNFVDSQGQEYTMIDTAGM 233 Query: 61 -------ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIP 113 + + S+ + M AI+ + ++L +I+++ GI YD I F + Sbjct: 234 RKSGKVYENTEKYSVMRSMR-----AIDRSDVVLMVINAEEGIREYDKRIAGFAHEAGKG 288 Query: 114 IIIVSNKMDT 123 IIIV NK DT Sbjct: 289 IIIVVNKWDT 298 >gi|225867922|ref|YP_002743870.1| GTP-binding protein EngA [Streptococcus equi subsp. zooepidemicus] gi|225701198|emb|CAW98121.1| GTP-binding protein EngA [Streptococcus equi subsp. zooepidemicus] Length = 446 Score = 227 bits (578), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 135/462 (29%), Positives = 237/462 (51%), Gaps = 31/462 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AIVG PNVGKSTLFNR+ +++++V + G+TRDR+Y F+++DT GI D Sbjct: 15 TVAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTTGEWLNRQFSLIDTGGI-DD 73 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + +Q+ Q +A++EA +I+F++ K G+T D ++ L + N P+I+V NK+D Sbjct: 74 VDAPFMEQIKHQAHIAMDEADVIVFVVSGKEGVTDADEYVSKLLYRTNKPVILVVNKVDN 133 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + Y+ YSL + +S+ H +GT ++ I N P+E I N Sbjct: 134 PEMRNDIYDFYSLGLGDPFPVSSVHGIGTGDVLDAIID-------NLPVEEIVEN----- 181 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 +R +++GRPNVGKS+LIN +LG R++ +G TRD++ Sbjct: 182 -----------------DDVIRFSLIGRPNVGKSSLINAILGEERVIASPVAGTTRDAID 224 Query: 244 ISW-NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 S+ + + DTAGMRK ++ E+ E+ +V ++M+++ + +++++A Sbjct: 225 TSFTDESGQAYTMIDTAGMRKSGKVYENTEKYSVMRAMRAIDRSDIVLMVINAEEGIRDY 284 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D RI G +++ +NKWD + + + + I +S T + Sbjct: 285 DKRIAGFAHEAGKGMIIVVNKWDTIEKDNHTVARWEADIRDQFQFLTYAPIIFVSAVTKQ 344 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 L+ L + I+ RI+++ LN + NP PT R ++ Y TQ+ PP+ Sbjct: 345 RLNRLPELIKRISDSQSQRISSAILNDVIMDAIAINPTPTDKGRRLKIFYATQVSVKPPT 404 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 F++F + SY R+L N++R F+ G PI++ ++ K Sbjct: 405 FVVFVNEEELMHFSYLRFLENQIRAAFTFEGTPIKLIARNRK 446 >gi|303232256|ref|ZP_07318955.1| ribosome-associated GTPase EngA [Atopobium vaginae PB189-T1-4] gi|302481666|gb|EFL44727.1| ribosome-associated GTPase EngA [Atopobium vaginae PB189-T1-4] Length = 439 Score = 227 bits (578), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 151/468 (32%), Positives = 240/468 (51%), Gaps = 42/468 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL NRL K A+V G+TRDR Y GV F ++DT GI K Sbjct: 6 VAIVGRPNVGKSTLVNRLATTKTAIVHESRGVTRDRSYHDCDWRGVDFTLIDTGGIESQK 65 Query: 65 NCSI-AKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + + A + +Q LA EA +I+ ++D G+ D + +R+ + P + NK+D Sbjct: 66 STDVFALGIREQALLACEEADVIVQVVDGTIGVLEEDEEVARIVRRLHKPCFLAVNKIDN 125 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + SL + ISA H T +L +I + FK E+ Sbjct: 126 PETVIDDWMYLSLGLGSPIAISATHGTQTGDLLDLIVESFKCIV-------------QED 172 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 SP + L IAV+GRPNVGKS+L+N+L NR L + +G TRD++ Sbjct: 173 SPYGD-------------DMLSIAVIGRPNVGKSSLVNKLSKTNRSLVANIAGTTRDAID 219 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 I + + + PI + DTAGMRK S++ E +E ++ + +Q++ + ++++DA +QD Sbjct: 220 ICFEYHDTPIRLVDTAGMRKKSQVHEDVEYYSLVRGLQAMDKADVALMVIDAAEGMTEQD 279 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVS---DKLNLLQDL--RTKAIKNLPQIGDIYINTISG 358 +++ + G A+VL +NK D++S DKL L L R Q+ IS Sbjct: 280 QKLMGMAIDRGCALVLVINKIDLLSSEEDKLKLKDSLAIRLTFATWAKQV------QISA 333 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLK--YITQI 416 TG+ + ++ + + + + TS LN+ + T+++ TI ++ RLK Y TQ Sbjct: 334 LTGKNTNKILDAAIAAAHARSSHLKTSQLNALI--TRIREAGHTIVHKSRRLKIHYATQT 391 Query: 417 QSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 +PP FC + + ++Y R+L NRLR F LSG PI + F++ + Sbjct: 392 GDNPPQITFFCNAKDLLDDAYIRFLENRLREAFDLSGTPIELKFRNKE 439 Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 38/128 (29%), Positives = 67/128 (52%), Gaps = 12/128 (9%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI- 60 + +IA++G PNVGKS+L N+L K ++V N G TRD + + +VDTAG+ Sbjct: 179 MLSIAVIGRPNVGKSSLVNKLSKTNRSLVANIAGTTRDAIDICFEYHDTPIRLVDTAGMR 238 Query: 61 ------ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPI 114 D + S+ + + A+++A + L +ID+ G+T D + + + Sbjct: 239 KKSQVHEDVEYYSLVRGLQ-----AMDKADVALMVIDAAEGMTEQDQKLMGMAIDRGCAL 293 Query: 115 IIVSNKMD 122 ++V NK+D Sbjct: 294 VLVINKID 301 >gi|218437880|ref|YP_002376209.1| GTP-binding protein EngA [Cyanothece sp. PCC 7424] gi|226741132|sp|B7KHD2|DER_CYAP7 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|218170608|gb|ACK69341.1| small GTP-binding protein [Cyanothece sp. PCC 7424] Length = 452 Score = 226 bits (577), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 139/472 (29%), Positives = 236/472 (50%), Gaps = 39/472 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKSTL NRL + A+V + PGITRDR Y A F +VDT G+ Sbjct: 6 VAIIGRPNVGKSTLVNRLAGDQQAIVHDEPGITRDRTYRPAFWQDRDFQVVDTGGLVFDD 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + +Q A+ EAH +F++D + G TP D I ++LR +++PII+ NK ++ Sbjct: 66 DTEFLPLIREQAMTALAEAHAAIFVVDGQTGPTPADEEIANWLRSQSVPIILAVNKCES- 124 Query: 125 IAQR--NFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 + Q E + L E IS+ H GT EL + Sbjct: 125 VEQGLIQASEFWQLGLGEPYPISSIHGSGTGELLDKLIIYLP------------------ 166 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 T+E S I ++A+VGRPNVGKS+L+N L G NR + SG TRD++ Sbjct: 167 -------TTESLSETNEI----KVAIVGRPNVGKSSLLNALTGENRAIVSPISGTTRDAI 215 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + + DTAG+R+ + E ++ ++ +++R + + ++DA Q Sbjct: 216 DMVVQRNEQQYRLIDTAGIRRKKNVEYGAEFFSINRAFKAIRRADVVLFVIDALDGITDQ 275 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMV---SDKLNLLQDLRTKAIKNLPQIGDIYINTISGR 359 DL++ + + G A VL +NKWD V S + Q + + + I+++ ++G+ Sbjct: 276 DLKLAGRISDEGRATVLVINKWDAVDKDSYTIYEYQKMLESRLYFMDWAEMIFVSALTGK 335 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQK-TQLQNPPPTIFNRYNRLKYITQIQS 418 E + DL+ + + + R++T+ +N LQ+ T +PP T + ++ Y TQI+S Sbjct: 336 RVEKILDLVDNATASH---RRRVSTAVINEVLQEATTWHSPPTTRQGKQGKIYYGTQIKS 392 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 PP+ +F P + ++Y+RY+ + R +G PIR+ ++ +++ Sbjct: 393 EPPTITLFVNDPKRFNDNYRRYIERQFRQQLGFTGTPIRLIWRGKSTREVER 444 >gi|159479670|ref|XP_001697913.1| hypothetical protein CHLREDRAFT_120661 [Chlamydomonas reinhardtii] gi|158274011|gb|EDO99796.1| predicted protein [Chlamydomonas reinhardtii] Length = 446 Score = 226 bits (577), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 145/468 (30%), Positives = 229/468 (48%), Gaps = 37/468 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKS LFNR+ +AVV + PG+TRDRLY +A F ++DT G+ Sbjct: 1 VAIVGRPNVGKSALFNRIAGASVAVVFDQPGVTRDRLYTRAFWGDKEFVMIDTGGLMSDA 60 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIP---IIIVSNKM 121 + Q + EA ++ L+D +AG+ P D I S+LR N P +++ NK Sbjct: 61 TRLPPDAIERQAAAGVAEADTVILLVDGQAGLQPGDEEILSWLRS-NHPSKSLLLAVNKC 119 Query: 122 D-TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + A + E +S E +SA GT E+ V+ K+ Sbjct: 120 ENVAKADQMVAEFWSTGL-EPHAVSAISGTGTGEMLDVLAKMLP---------------- 162 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 G + +PL +A+VGRPNVGKS+L+N + G R + SG TRD Sbjct: 163 ---------PPTGAEQDDDPDRPLAVAIVGRPNVGKSSLLNAIAGEERSIVCDMSGTTRD 213 Query: 241 SVSISWNW-KNHPIEIFDTAGMRKPSRITES---LEQKTVKKSMQSVRTCETTIVLLDAT 296 +V + + DTAG+RK SR+ +S EQ +V ++M++VR + ++++DA Sbjct: 214 AVDTKVTLPTGKKLTLIDTAGIRKRSRVADSPDGAEQISVDRAMRAVRRADVAVLVIDAV 273 Query: 297 IPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTI 356 +QD R+ + G AVV+ +NKWD V +L ++ + L + + Sbjct: 274 EGITQQDFRLSELFAAEGKAVVVVVNKWDRVDPRLWTVEKMAENVRTQLRHVAWASVVCT 333 Query: 357 SGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFN--RYNRLKYIT 414 S G ++D++ +VL+ + R+ T+ LN L++ PPT R R+ Y T Sbjct: 334 SAIYGRHVEDVLEAVLDAGAQHRRRVPTATLNMVLREATQWKSPPTQRGSLRKGRIYYAT 393 Query: 415 QIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 Q + PPSF+ F P+ Y+RY+ +LR N G P+R+ ++ Sbjct: 394 QAGARPPSFVFFVNDEKLFPDDYRRYMERQLRDNIGFPGSPLRLFWRG 441 >gi|317124960|ref|YP_004099072.1| ribosome-associated GTPase EngA [Intrasporangium calvum DSM 43043] gi|315589048|gb|ADU48345.1| ribosome-associated GTPase EngA [Intrasporangium calvum DSM 43043] Length = 494 Score = 226 bits (577), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 138/457 (30%), Positives = 238/457 (52%), Gaps = 31/457 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A++G PNVGKS+L NR+++++ AVV + PG+TRDR+ + G F +VDT G + Sbjct: 62 VAVIGRPNVGKSSLVNRILRRREAVVEDVPGVTRDRVSYEGEWAGRRFTVVDTGGW-ESD 120 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I ++ +Q E+AI+ A +++F++D+ G T D ++ LR+ P+++++NK+D + Sbjct: 121 VTGIHLRVAEQAEIAIDLADVVMFVVDATVGATDDDESVVRLLRRSGKPVVLIANKVDDQ 180 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + +++L + +SA H G+ + + ++ Q Sbjct: 181 RGEADAAALWNLGLGQPWPVSALHGRGSGDALDAVLEVLPQ------------------- 221 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 +++ G + P R+A+VGRPNVGKS+L+N+L G R++ S +G TRD V Sbjct: 222 ----VSAHGAYAQGG---PRRVALVGRPNVGKSSLLNKLAGSERVVVDSVAGTTRDPVDE 274 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 DTAG+R+ T + ++ ++ E +VL+DA P +QD+ Sbjct: 275 LIELAGTTWRFVDTAGIRRRVHQTRGADFYASLRTQTALEKAEVAVVLIDAEEPIAEQDV 334 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 R+V V + G A+V+A NKWD + ++ L + K L Q+ IS +TG L Sbjct: 335 RVVQQVIDAGRALVVAYNKWDTLDEERRYY--LEREIEKELVQVPWAARVNISAKTGRHL 392 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 D L+ ++ + + W TRI T LN++L + +P P + R+ + TQ + PP F+ Sbjct: 393 DRLVPALEKALESWDTRIPTGRLNAFLGEVVAGHPHPVRGGKQPRILFATQAATRPPRFV 452 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 IF + I Y+R+L RLR F G PI + + Sbjct: 453 IFAS--GFIEAGYRRFLERRLREQFGFEGTPIEVSVR 487 >gi|21220251|ref|NP_626030.1| GTP-binding protein EngA [Streptomyces coelicolor A3(2)] gi|256788632|ref|ZP_05527063.1| GTP-binding protein EngA [Streptomyces lividans TK24] gi|289772527|ref|ZP_06531905.1| ribosome-associated GTPase EngA [Streptomyces lividans TK24] gi|10799853|emb|CAC12931.1| putative GTP binding protein [Streptomyces coelicolor A3(2)] gi|289702726|gb|EFD70155.1| ribosome-associated GTPase EngA [Streptomyces lividans TK24] Length = 492 Score = 226 bits (577), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 143/478 (29%), Positives = 240/478 (50%), Gaps = 54/478 (11%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD-- 62 +A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ +A G F +VDT G Sbjct: 56 LAVVGRPNVGKSTLVNRIIGRREAVVEDKPGVTRDRVTYEAEWAGRRFKVVDTGGWEQDV 115 Query: 63 -GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 G + S+A Q E AI A ++F++D+K G T D A+ LRK P+++ +NK+ Sbjct: 116 LGIDASVAA----QAEYAIEAADAVVFVVDAKVGATDTDEAVVRLLRKAGKPVVLCANKV 171 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D + + ++SL E +SA H GT ++ + + Sbjct: 172 DGPSGEADASYLWSLGLGEPQPVSALHGRGTGDMLDRVLEALP----------------- 214 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 E+P + + + P RIA++GRPNVGKS+L+N++ G +R++ +G TRD Sbjct: 215 -EAPAQTFGT-------AVGGPRRIALIGRPNVGKSSLLNKVAGEDRVVVNELAGTTRDP 266 Query: 242 V-------SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLD 294 V ++W + DTAG+RK + + + ++ +V E ++L+D Sbjct: 267 VDELIELGGVTWKF-------VDTAGIRKRVHLQQGADYYASLRTAAAVEKAEVAVILVD 319 Query: 295 ATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSD--KLNLLQDLRTKAIKNLPQIGDIY 352 A+ QD RIV G A+V+A NKWD + + + L +++ T+ L Q+ Sbjct: 320 ASESISVQDQRIVTMAVEAGRAIVVAYNKWDTLDEERRYYLEREIETE----LGQVAWAP 375 Query: 353 INTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKY 412 +S +TG ++ L+ ++ W+TR+ T LN++L + +P P + R+ + Sbjct: 376 RVNVSAQTGRHMEKLVPAIETALAGWETRVPTGRLNAFLGELAAAHPHPVRGGKQPRILF 435 Query: 413 ITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 TQ + PP F++F + I Y+R++ RLR F G PI + + + KK Sbjct: 436 GTQAGTKPPRFVLFAS--GFIEAGYRRFIERRLREEFGFEGTPIHISVRVREKRGAKK 491 >gi|302546520|ref|ZP_07298862.1| ribosome-associated GTPase EngA [Streptomyces hygroscopicus ATCC 53653] gi|302464138|gb|EFL27231.1| ribosome-associated GTPase EngA [Streptomyces himastatinicus ATCC 53653] Length = 487 Score = 226 bits (577), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 142/480 (29%), Positives = 242/480 (50%), Gaps = 58/480 (12%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD-- 62 +A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ +A +G F +VDT G Sbjct: 52 LAVVGRPNVGKSTLVNRVLGRREAVVEDKPGVTRDRVTYEAEWSGRRFKVVDTGGWEQDV 111 Query: 63 -GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 G + S+A Q E AI A ++F++D+ G T D A+ LR+ P+++ +NK+ Sbjct: 112 LGIDASVAA----QAEFAIEAADAVVFVVDATVGATDTDEAVVKLLRRAGKPVVLCANKV 167 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D + + ++SL E +SA H GT ++ + + Sbjct: 168 DGPSGEADAAMLWSLGLGEPHPVSALHGRGTGDMLDAVLEALP----------------- 210 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 E+P + + + P RIA++GRPNVGKS+L+N++ G R++ +G TRD Sbjct: 211 -EAPAQTFGA-------TVGGPRRIALIGRPNVGKSSLLNKVAGEERVVVNEVAGTTRDP 262 Query: 242 V-------SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLD 294 V I+W + DTAG+R+ + E + ++ +V E ++L+D Sbjct: 263 VDELIELGGITWKF-------VDTAGIRRRVHLQEGADYYASLRTAAAVEKAEVAVILID 315 Query: 295 ATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSD--KLNLLQDLRTK--AIKNLPQIGD 350 + P QD RI+ G A+V+A NKWD + + + L +++ T+ I+ P++ Sbjct: 316 TSEPISVQDQRIITMAVEAGRALVIAYNKWDTLDEERRYYLEREIETELGQIQWAPRV-- 373 Query: 351 IYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRL 410 +S RTG ++ L+ ++ W+TR+ T LNS+L + +P P + R+ Sbjct: 374 ----NVSARTGRHMEKLVPAIETALAGWETRVPTGRLNSFLGEIVASHPHPIRGGKQPRI 429 Query: 411 KYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 + TQ + PP F++F + + Y+R++ RLR F G PI++ + + KK Sbjct: 430 LFGTQAGTRPPRFVLFAS--GFLEAGYRRFVERRLREEFGFEGTPIQISVRVREKRGRKK 487 >gi|255505344|ref|ZP_05345588.3| ribosome-associated GTPase EngA [Bryantella formatexigens DSM 14469] gi|255268481|gb|EET61686.1| ribosome-associated GTPase EngA [Bryantella formatexigens DSM 14469] Length = 442 Score = 226 bits (577), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 142/461 (30%), Positives = 231/461 (50%), Gaps = 29/461 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFN L + +++V + PG+TRDR+Y F ++DT GI Sbjct: 6 VAIVGRPNVGKSTLFNALAGENISIVKDTPGVTRDRIYADVEWLNYQFTLIDTGGIEPDS 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 + I QM +Q ++AI+ A +I+F++D + G+ D + LR+ P+++ NK D Sbjct: 66 SDVILSQMREQAQIAIDTADVIIFMVDVRQGLIDADSKVADMLRRSRKPVVLAVNKADNY 125 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + YE Y+L + ISA G ++ V+ F EN + E Sbjct: 126 EKSLPDVYEFYNLGIGDPQPISAAGKQGLGDMLDVVVGYFT-----------ENGQEERE 174 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 + RIAVVG+PNVGKS++IN+LLG NR++ +G TRD++ Sbjct: 175 DDRP-----------------RIAVVGKPNVGKSSIINKLLGENRVIVSDIAGTTRDAID 217 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + W DTAG+R+ ++I E LE+ ++ +++ +V + +V++DA +QD Sbjct: 218 TAITWGGREYVFIDTAGLRRKNKIKEELERYSIIRTVTAVDRADVVVVVIDAVEGVTEQD 277 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 +I + G +++ +NKWD + + K + L + I +S +TG+ Sbjct: 278 AKIAGIAHDRGKGILVVVNKWDAIEKDDKTVYKYTEKIRETLSFMPYAEIMFVSAQTGQR 337 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 L L + I + RI T LN L + PP+ + +L YITQ+ PP+F Sbjct: 338 LAKLFDMIDMIVQNQSMRIATGVLNEILSEAVALQQPPSDKGKRLKLYYITQVSVKPPTF 397 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 +IF + SY RYL N++R F G P++ + K Sbjct: 398 VIFVNDRALMHFSYTRYLENKIRDTFGFRGTPLKFIIRERK 438 >gi|323356705|ref|YP_004223101.1| GTPase [Microbacterium testaceum StLB037] gi|323273076|dbj|BAJ73221.1| predicted GTPase [Microbacterium testaceum StLB037] Length = 507 Score = 226 bits (577), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 143/459 (31%), Positives = 235/459 (51%), Gaps = 39/459 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI---A 61 +AIVG PNVGKS L NR++ ++ AVV + PG+TRDR+ +A F++VDT G A Sbjct: 69 VAIVGRPNVGKSALVNRILGRREAVVEDTPGVTRDRVTYKAEWLDRRFSLVDTGGWEPDA 128 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 G + S+A Q E+AI+ A ++LF++D+ G T D + LRK P+ +++NK+ Sbjct: 129 KGIDRSVAAQ----AEVAIDLADVVLFVVDATVGATSTDEHVVKLLRKSKKPVFLIANKV 184 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D + +++L E +SA H G ++L + K+ + Sbjct: 185 DDARQEPEATALWNLGLGEPHPVSAIHGRGVADLLDELMKVLPE---------------- 228 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 +++ K I P R+A++GRPNVGKS+L+N+ G R++ +G TRD Sbjct: 229 -------VSAVAKY---EIGGPRRVAILGRPNVGKSSLLNKAAGEERVVVNELAGTTRDP 278 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 V + DTAG+R+ +++ + ++ ++ E +V+LD + P Sbjct: 279 VDEVVELGGKLWTLVDTAGIRRRVHLSQGADFYASLRTSTALEKSEVAVVVLDVSQPISV 338 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQD----LRTKAIKNLPQIGDIYINTIS 357 QDL I+D V +G A+VLA NKWD ++D QD L + ++L + IS Sbjct: 339 QDLNIIDLVLESGRALVLAFNKWDRLNDDDMENQDRRRYLEREIEQDLAHVAWAPRVNIS 398 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 RTG LD L+ ++ + W TRI T N++L + ++P P + R+ + TQ Sbjct: 399 ARTGRHLDKLVPALETALESWDTRIPTGKFNAFLSELVAEHPHPLRGGKQPRILFGTQAA 458 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 + PP+F++F T + Y+R++ RLR + G PI Sbjct: 459 TRPPTFVLFTT--GFLDPGYRRFIQRRLREIYGFEGTPI 495 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 50/194 (25%), Positives = 96/194 (49%), Gaps = 12/194 (6%) Query: 191 SEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKN 250 + G+ +++ + +A+VGRPNVGKS L+NR+LG + G+TRD V+ W + Sbjct: 54 ASGEGAIEFLPALPVVAIVGRPNVGKSALVNRILGRREAVVEDTPGVTRDRVTYKAEWLD 113 Query: 251 HPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSV 310 + DT G ++ +++ ++ ++ + + ++DAT+ D +V + Sbjct: 114 RRFSLVDTGGWEPDAK---GIDRSVAAQAEVAIDLADVVLFVVDATVGATSTDEHVVKLL 170 Query: 311 FNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIY-INTISGR-TGEGLDDLM 368 + V L NK D + Q+ A+ NL +G+ + ++ I GR + LD+LM Sbjct: 171 RKSKKPVFLIANKVD------DARQEPEATALWNL-GLGEPHPVSAIHGRGVADLLDELM 223 Query: 369 VSVLEINKLWKTRI 382 + E++ + K I Sbjct: 224 KVLPEVSAVAKYEI 237 >gi|110596891|ref|ZP_01385181.1| Small GTP-binding protein domain:GTP-binding [Chlorobium ferrooxidans DSM 13031] gi|110341578|gb|EAT60038.1| Small GTP-binding protein domain:GTP-binding [Chlorobium ferrooxidans DSM 13031] Length = 437 Score = 226 bits (577), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 143/464 (30%), Positives = 249/464 (53%), Gaps = 42/464 (9%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTLFNR+++++ A+V + PG+TRDR G F ++DT G + + Sbjct: 5 IALVGRPNVGKSTLFNRILRQRSAIVDSTPGVTRDRHIADGEWQGKQFLLMDTGGY-NAE 63 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRK--KNIPIIIVSNKMD 122 + I+K M +QT +AI +A +I+F+ D++AG++ D + L++ +N + NK++ Sbjct: 64 SDLISKAMLEQTLMAIRDADIIVFVTDARAGLSYEDLELGKLLKRNFQNKQLFFAVNKVE 123 Query: 123 TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 + S F + ISA+ G +++ I + F + Sbjct: 124 SPQLIIEAESFISTGFTKPYFISAKDGSGVADMLDDILETFPEL---------------- 167 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 E++ E S++ +A+VGRPNVGKS+ +N LL NR + S +G TRD++ Sbjct: 168 ----EDVPDEEDSAIS-------LAIVGRPNVGKSSFVNALLNSNRHIVSSIAGTTRDAI 216 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + K + DTAG+RK ++I +E + ++ +++ C+ +V+LDAT EKQ Sbjct: 217 DSRFTRKKQEFVLIDTAGLRKRTKIDRGIEYYSSLRTEKALERCDVALVMLDATPGIEKQ 276 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAI------KNLPQIGDIYINTI 356 DL+I++ +L +NKWD++ +D +T I ++ +G I + I Sbjct: 277 DLKIINMAVEKKKGALLLVNKWDLIE------KDSKTSKIYEDNLRSSMGNLGYIPVLFI 330 Query: 357 SGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQI 416 S T + L + + +I++ +I+TS LN +L++T Q P + + ++KY+TQI Sbjct: 331 SALTKKNLYRAIDTAQQISESRSRKISTSALNRFLEETLQQKHPSSRTGKELKIKYMTQI 390 Query: 417 QSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCF 460 +S P F FC P + ++ ++L +LR +FSL G+PI + F Sbjct: 391 ESHWPIFAFFCNDPELVQTNFIKFLEKKLRESFSLEGVPISLRF 434 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 62/123 (50%), Gaps = 6/123 (4%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 ++AIVG PNVGKS+ N L+ +V + G TRD + + F ++DTAG+ Sbjct: 179 SLAIVGRPNVGKSSFVNALLNSNRHIVSSIAGTTRDAIDSRFTRKKQEFVLIDTAGLR-- 236 Query: 64 KNCSIAKQM----NDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 K I + + + +TE A+ + L ++D+ GI D I + +K +++ N Sbjct: 237 KRTKIDRGIEYYSSLRTEKALERCDVALVMLDATPGIEKQDLKIINMAVEKKKGALLLVN 296 Query: 120 KMD 122 K D Sbjct: 297 KWD 299 >gi|25011707|ref|NP_736102.1| GTP-binding protein EngA [Streptococcus agalactiae NEM316] gi|41017045|sp|Q8E3T9|DER_STRA3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|24413247|emb|CAD47326.1| Unknown [Streptococcus agalactiae NEM316] Length = 436 Score = 226 bits (577), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 136/462 (29%), Positives = 240/462 (51%), Gaps = 31/462 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AIVG PNVGKSTLFNR+ +++++V + G+TRDR+Y F+++DT GI D Sbjct: 5 TVAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTTGEWLNRKFSLIDTGGI-DD 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + +Q+ Q ++A+ EA +I+F++ K G+T D ++ L K N P+I+ NK+D Sbjct: 64 VDAPFMEQIKHQADIAMTEADVIVFVVSGKEGVTDADEYVSLILYKTNKPVILAVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + Y+ YSL + +S+ H +GT ++ I + N P+E EE Sbjct: 124 PEMRNDIYDFYSLGLGDPYPLSSVHGIGTGDILDAIVE-------NLPVE--------EE 168 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 + +I +R +++GRPNVGKS+LIN +LG +R++ +G TRD++ Sbjct: 169 NENPDI--------------IRFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAID 214 Query: 244 ISW-NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 ++ + + + DTAGMRK ++ E+ E+ +V +SM+++ + +++++A + Sbjct: 215 TNFVDSQGQEYTMIDTAGMRKSGKVYENTEKYSVMRSMRAIDRSDVVLMVINAEEGIREY 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D RI G +++ +NKWD + + + N + I +S T + Sbjct: 275 DKRIAGFAHEAGKGIIIVVNKWDTIEKDSHTVSQWEADIRDNFQFLSYAPIIFVSAETKQ 334 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 L L + I++ RI ++ LN + NP PT + ++ Y TQ+ PP+ Sbjct: 335 RLHKLPDMIKRISESQNKRIPSAVLNDVIMDAIAINPTPTDKGKRLKIFYATQVAVKPPT 394 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 F++F + SY R+L N++R F G PI + + K Sbjct: 395 FVVFVNEEELMHFSYLRFLENQIREAFVFEGTPINLIARKRK 436 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 39/130 (30%), Positives = 67/130 (51%), Gaps = 13/130 (10%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIIN-GVIFNIVDTAGI 60 I +++G PNVGKS+L N ++ + + G TRD + + + G + ++DTAG+ Sbjct: 174 IIRFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTNFVDSQGQEYTMIDTAGM 233 Query: 61 -------ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIP 113 + + S+ + M AI+ + ++L +I+++ GI YD I F + Sbjct: 234 RKSGKVYENTEKYSVMRSMR-----AIDRSDVVLMVINAEEGIREYDKRIAGFAHEAGKG 288 Query: 114 IIIVSNKMDT 123 IIIV NK DT Sbjct: 289 IIIVVNKWDT 298 >gi|159028658|emb|CAO88129.1| engA [Microcystis aeruginosa PCC 7806] Length = 452 Score = 226 bits (577), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 142/474 (29%), Positives = 240/474 (50%), Gaps = 43/474 (9%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKSTL NR+ + A+V + PGITRDR Y A F IVDT G+ Sbjct: 6 VAIIGRPNVGKSTLVNRIAGDQQAIVFDQPGITRDRTYQPAFWCDRDFQIVDTGGLVFND 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 + + +Q +A+ EA + +F++D +AGIT D I ++LR++N+PI++ NK ++ Sbjct: 66 DSEFLPLIREQALIALAEASVAIFVVDGQAGITAGDREIAAWLRQQNVPILLAVNKCESV 125 Query: 124 --RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 I Q E + L E ISA H GT EL + KY E+ EN + Sbjct: 126 EQGILQAT--EFWELAIGEPFPISAIHGSGTGELLDALI-----KYLPPGAEIPENEE-- 176 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 +++A++GRPNVGKS+L+N L G R + SG TRDS Sbjct: 177 ----------------------IKVAIIGRPNVGKSSLLNALTGQQRAIVSPISGTTRDS 214 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 + + + DTAG+R+ + E ++ ++ +++R + + ++D + Sbjct: 215 IDTLIEREGQVYRLIDTAGIRRKKNVDYGAEFFSINRAFKAIRRSDVVLFVIDVLDGVTE 274 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGD----IYINTIS 357 QDL++ + G AVVL +NKWD V +K + TK +++ D I+++ ++ Sbjct: 275 QDLKLAGRIIEEGRAVVLVVNKWDAV-EKDTYTINTYTKMLQDRLYFMDWAEMIFVSAMT 333 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKT-QLQNPPPTIFNRYNRLKYITQI 416 G+ + +L+ E + + R++TS +N ++ + NPP T + +L Y TQ+ Sbjct: 334 GQRVTKILELVDIAAESH---RRRVSTSVINDVIEDAVKWHNPPTTRGGKQGKLYYGTQV 390 Query: 417 QSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 S PP+ +F P + ++Y+RY+ + R G PIR+ ++ ++K Sbjct: 391 SSQPPTIALFVNDPQRFNDNYRRYIEGQFRQQLGFKGTPIRLIWRGKPAREVEK 444 >gi|166362822|ref|YP_001655095.1| GTP-binding protein EngA [Microcystis aeruginosa NIES-843] gi|189037151|sp|B0JFL6|DER_MICAN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|166085195|dbj|BAF99902.1| GTP binding protein [Microcystis aeruginosa NIES-843] Length = 452 Score = 226 bits (576), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 141/474 (29%), Positives = 240/474 (50%), Gaps = 43/474 (9%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKSTL NR+ + A+V + PGITRDR Y A F IVDT G+ Sbjct: 6 VAIIGRPNVGKSTLVNRIAGDQQAIVFDQPGITRDRTYQPAFWCDRDFQIVDTGGLVFND 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 + + +Q +A+ EA + +F++D + GIT D I ++LR++N+PI++ NK ++ Sbjct: 66 DSEFLPLIREQALIALAEASVAIFVVDGQGGITAGDREIAAWLRQQNVPILLAVNKCESV 125 Query: 124 --RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 I Q E + L E ISA H GT EL + KY E+ EN + Sbjct: 126 EQGILQAT--EFWELAIGEPFPISAIHGSGTGELLDAVI-----KYLPPAAEIPENEE-- 176 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 +++A++GRPNVGKS+L+N L G R + SG TRDS Sbjct: 177 ----------------------IKVAIIGRPNVGKSSLLNALTGQQRAIVSPISGTTRDS 214 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 + + + DTAG+R+ + E ++ ++ +++R + + ++D + Sbjct: 215 IDTLIEREGQVYRLIDTAGIRRKKNVDYGAEFFSINRAFKAIRRSDVVLFVIDVLDGVTE 274 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGD----IYINTIS 357 QDL++ + G AVVL +NKWD V +K + TK +++ D I+++ ++ Sbjct: 275 QDLKLAGRIIEEGRAVVLVVNKWDAV-EKDTYTINTYTKMLQDRLYFMDWAEMIFVSAMT 333 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKT-QLQNPPPTIFNRYNRLKYITQI 416 G+ + +L+ E + + R++TS +N +++ + NPP T + +L Y TQ+ Sbjct: 334 GQRVTKILELVDIAAESH---RRRVSTSVINDVIEEAVKWHNPPTTRGGKQGKLYYGTQV 390 Query: 417 QSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 S PP+ +F P + ++Y+RY+ + R G PIR+ ++ ++K Sbjct: 391 SSQPPTIALFVNDPQRFNDNYRRYIEGQFRQQLGFKGTPIRLIWRGKPAREVEK 444 >gi|94989793|ref|YP_597893.1| GTP-binding protein EngA [Streptococcus pyogenes MGAS10270] gi|94993678|ref|YP_601776.1| GTP-binding protein EngA [Streptococcus pyogenes MGAS10750] gi|166225863|sp|Q1JIH4|DER_STRPD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|166225864|sp|Q1J8C9|DER_STRPF RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|94543301|gb|ABF33349.1| GTP-binding protein [Streptococcus pyogenes MGAS10270] gi|94547186|gb|ABF37232.1| GTP-binding protein [Streptococcus pyogenes MGAS10750] Length = 436 Score = 226 bits (576), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 138/467 (29%), Positives = 244/467 (52%), Gaps = 41/467 (8%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AIVG PNVGKSTLFNR+ +++++V + G+TRDR+Y F+++DT GI D Sbjct: 5 TVAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRQFSLIDTGGI-DD 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + +Q+ Q ++A+ EA +I+F++ K G+T D ++ L + N P+I+ NK+D Sbjct: 64 VDAPFMEQIKHQAQIAMEEADVIVFVVSGKEGVTDADEYVSKILYRTNTPVILAVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + Y+ YSL + +S+ H +GT ++ I + N P+E E N Sbjct: 124 PEMRNDIYDFYSLGLGDPYPVSSVHGIGTGDVLDAIVE-------NLPVEEAEEN----- 171 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 +R +++GRPNVGKS+LIN +LG +R++ +G TRD++ Sbjct: 172 -----------------DDIIRFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAID 214 Query: 244 ISW-NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + + + DTAGMRK +I E+ E+ +V ++M+++ + +++++A + Sbjct: 215 THFTDADGQEFTMIDTAGMRKSGKIYENTEKYSVMRAMRAIDRSDVVLMVINAEEGIREY 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLL-----QDLRTKAIKNLPQIGDIYINTIS 357 D RI G +++ +NKWD + DK N D+R + + L I+++ ++ Sbjct: 275 DKRIAGFAHEAGKGMIIVVNKWDTL-DKDNHTVAKWEADIRDQ-FQFLTYAPIIFVSALT 332 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 + L DL + I++ RI ++ LN + NP PT + ++ Y TQ+ Sbjct: 333 KQRLNKLPDL---IKRISESQNKRIPSAVLNDVIMDAIAINPTPTDKGKRLKIFYATQVS 389 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 PP+F++F + SY R+L N++R F+ G PI + + K Sbjct: 390 VKPPTFVVFVNEEELMHFSYLRFLENQIRAAFTFEGTPIHLIARKRK 436 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 68/132 (51%), Gaps = 17/132 (12%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRL---YGQAIINGVIFNIVDTA 58 I +++G PNVGKS+L N ++ + + G TRD + + A +G F ++DTA Sbjct: 174 IIRFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTHFTDA--DGQEFTMIDTA 231 Query: 59 GI-------ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKN 111 G+ + + S+ + M AI+ + ++L +I+++ GI YD I F + Sbjct: 232 GMRKSGKIYENTEKYSVMRAMR-----AIDRSDVVLMVINAEEGIREYDKRIAGFAHEAG 286 Query: 112 IPIIIVSNKMDT 123 +IIV NK DT Sbjct: 287 KGMIIVVNKWDT 298 >gi|302339695|ref|YP_003804901.1| ribosome-associated GTPase EngA [Spirochaeta smaragdinae DSM 11293] gi|301636880|gb|ADK82307.1| ribosome-associated GTPase EngA [Spirochaeta smaragdinae DSM 11293] Length = 453 Score = 226 bits (576), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 134/452 (29%), Positives = 229/452 (50%), Gaps = 24/452 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTLFNRLV+K+ A+ PG+TRD + + I++ IVDT G + Sbjct: 18 IAVVGRPNVGKSTLFNRLVRKRRAITDPTPGVTRDSIEHEWILDPYALTIVDTGGFKV-E 76 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 S+ +Q+ +++ + A LIL L+D +T D +LR + +++V NK+D R Sbjct: 77 GDSLDEQVKEKSVSYLKRADLILLLMDV-TDVTGEDETFIEYLRPYSDKLLLVVNKVDNR 135 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + S E + ISA H LG L + + + +++++ + E Sbjct: 136 ERENGVWNYLSYGLGEPIAISAAHGLGIDLLEEAVLRFLGEA------QLLKSREAEAED 189 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 S LR+A++G+PN GKSTL NRL+G + + G TRD V Sbjct: 190 ----------------SFSLRLALLGKPNTGKSTLANRLIGRDVSIVSDLPGTTRDVVES 233 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 S++++ I DTAG+R+ ++ E++E +V +++ ++ ++++DA +QD Sbjct: 234 SFSYRGMNCTILDTAGIRRKKKVGENIEYYSVNRALSAIEEAHVVLLMIDAQEGLSEQDK 293 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 +I + G +VV+ LNKWD++ + N++Q + + P + + IS +TGEG+ Sbjct: 294 KITSQIIKRGRSVVMVLNKWDLLQEVPNMIQAISDRVRFLFPVLSFAPLVPISAKTGEGV 353 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 D L+ +V + K R+ TS N L++ P + ++ Y TQ+ P FL Sbjct: 354 DKLLSTVYAVRKQMSKRVDTSRFNDKLKEWGEHYQPARGKRGHFKVLYGTQVGVEPVRFL 413 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 +F P Y YL N++R +P+ Sbjct: 414 LFVNRKKGFPPGYISYLTNKIRKELGFPSVPV 445 >gi|282895428|ref|ZP_06303565.1| GTP-binding protein engA [Raphidiopsis brookii D9] gi|281199461|gb|EFA74324.1| GTP-binding protein engA [Raphidiopsis brookii D9] Length = 453 Score = 226 bits (576), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 138/467 (29%), Positives = 232/467 (49%), Gaps = 41/467 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKST NRL + A+V + PG+TRDR Y A F +VDT G+ Sbjct: 6 VAIIGRPNVGKSTFVNRLAGDQTAIVHDEPGVTRDRTYRPAFWQNREFLVVDTGGLVFND 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM--- 121 N + Q A++EA +F++D +AG+TP D I +LR++ +P ++ NK Sbjct: 66 NTEFLPLIRQQAITALSEACAAIFVVDGQAGLTPADEEIAEWLRQQTVPTLLAVNKCESP 125 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D + Q + E + L E ISA H GT +L + K Q +E+ + N Sbjct: 126 DQGVIQAS--EFWELGLGEPYPISAIHGSGTGDLLDELIKYTPQ---------VEDLQEN 174 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 E +++A+VGRPNVGKS+L+N +G R + SG TRD+ Sbjct: 175 SE--------------------VKVAIVGRPNVGKSSLLNAFVGEERAIVSPISGTTRDT 214 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 + + + DTAG+RK + E ++ ++ +++R + +++LDA + Sbjct: 215 IDTLIEREGQAYRLIDTAGIRKKKHVEYGTEFFSINRAFKAIRRADVVLLVLDALDGVTE 274 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRT--KAIKNLPQIGD-IYINTISG 358 QD ++ + G A ++ +NKWD V + D +A + + D I+++ ++G Sbjct: 275 QDQKLAGRIIEDGRACIIVVNKWDAVEKDSYTIYDHEKSLEARLHFTEWADTIFVSAVTG 334 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWL-QKTQLQNPPPTIFNRYNRLKYITQIQ 417 + E + DL+ E + K R++TS +N L +PP + + ++ Y TQ+ Sbjct: 335 QRVEKILDLVNKAAESH---KRRVSTSVVNEVLTDAVSWHSPPASRSGKQGKIYYGTQVS 391 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 S PP+F +F + E+Y+RY+ + R G PIR+ ++S K Sbjct: 392 SQPPTFALFVNDAKRFNENYRRYIERQFRKQLGFEGTPIRILWRSKK 438 >gi|72383562|ref|YP_292917.1| GTP-binding protein EngA [Prochlorococcus marinus str. NATL2A] gi|123620367|sp|Q46H20|DER_PROMT RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|72003412|gb|AAZ59214.1| Small GTP-binding protein protein domain:GTP-binding protein [Prochlorococcus marinus str. NATL2A] Length = 456 Score = 226 bits (576), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 134/472 (28%), Positives = 243/472 (51%), Gaps = 38/472 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKSTL NRL + + A+V + PG+TRDR Y F +VDT G+ Sbjct: 6 VAIIGRPNVGKSTLVNRLCQSREAIVHDEPGVTRDRTYQDGFWRDRDFKVVDTGGLVFDD 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 + ++ +Q LA+ EA + L ++D + GIT D +I FLR ++ ++V NK ++ Sbjct: 66 DSEFLPEIREQANLALEEAVVALVIVDGQEGITTADESIAEFLRSRSGKTLVVVNKCESP 125 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + L E ISA H +GT +L + +F P+ L+ + ++ Sbjct: 126 EQGLAMAAQFWKLGLGEPYPISAIHGVGTGDLLDQVVNLF----PSKDLDEVSDS----- 176 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 P+++A++GRPNVGKS+L+N + G R + S G TRD++ Sbjct: 177 -------------------PVQLAIIGRPNVGKSSLLNSICGETRAIVSSIRGTTRDTID 217 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + ++ DTAG+R+ + E + +S +++ + ++++DA +QD Sbjct: 218 TRITHQGKEWKLVDTAGIRRRRSVNYGPEFFGINRSFKAIERSDVCVLVIDALDGVTEQD 277 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLL----QDLRTKAIKNLPQIGDIYINTISGR 359 R+ + G A ++ +NKWD V + + +D+R+K + L I+ + ++G+ Sbjct: 278 QRLAGRIEQEGRACLIVINKWDAVEKDSHTMSAMEKDIRSK-LYFLDWAQMIFTSAVTGQ 336 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKT-QLQNPPPTIFNRYNRLKYITQIQS 418 EG+ ++ L +++ + R+TTS +N L + + ++PP T + RL Y TQ+ Sbjct: 337 RVEGI--FALATLAVDQS-RRRVTTSVVNEVLTEALKWRSPPTTRGGKQGRLYYGTQVAI 393 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PPSF +F P E+Y+RY+ ++R G PI++ ++ + ++K Sbjct: 394 NPPSFTLFVNEPKLFGETYRRYIERQIREGLGFEGTPIKLFWRGKQQRDVEK 445 >gi|172035176|ref|YP_001801677.1| GTP-binding protein EngA [Cyanothece sp. ATCC 51142] gi|226706247|sp|B1X0B0|DER_CYAA5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|171696630|gb|ACB49611.1| GTP-binding protein [Cyanothece sp. ATCC 51142] Length = 452 Score = 226 bits (575), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 133/465 (28%), Positives = 234/465 (50%), Gaps = 37/465 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKSTL NRL K + A+V + PGITRDR Y A F +VDT G+ Sbjct: 6 VAIIGRPNVGKSTLVNRLAKDRQAIVHDQPGITRDRTYRPAFWCDRDFQVVDTGGLVFDD 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 + + +Q A+ EA +F++D + G T D I+ +LR++ +P+++ NK ++ Sbjct: 66 DTEFLPLIREQAMAALTEASAAIFVVDGQLGPTAGDREISDWLRRQKVPVLLAVNKCESP 125 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + E + L E IS H GT EL + Y P E+ + + N Sbjct: 126 EMGLIQAAEFWELGLGEPYPISGIHGSGTGELLDQLI-----TYLPSPDELPDREEIN-- 178 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 ++++GRPNVGKS+L+N LG R + SG TRD++ Sbjct: 179 ----------------------VSIIGRPNVGKSSLLNAFLGEQRAIVSPISGTTRDAID 216 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 ++ + DTAG+R+ + E ++ ++ +++R + ++++DA QD Sbjct: 217 TVVERGDNTYRLIDTAGIRRKKNVNYGAEFFSINRAFKAIRRADVVLLVIDAIDGVTDQD 276 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNL--PQIGD-IYINTISGRT 360 +++ D + + G A ++ +NKWD V + D + K + L + D I+++ +SG+ Sbjct: 277 IKLADRIIDEGRAAIIVVNKWDAVEKDSYTIYDYKQKVMDRLYFMEWADIIFVSAMSGKR 336 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKT-QLQNPPPTIFNRYNRLKYITQIQSS 419 E + +L+ +E + + R+ TS +N L++ + +PP T + R+ Y TQ+ S Sbjct: 337 VENIFELVDVAVEEH---RRRVNTSVVNEVLEEAVKWHSPPTTKQGKQGRIYYGTQVSSQ 393 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 PP+ +F P + ++Y+RY+ + R G PIR+ ++ K Sbjct: 394 PPTIALFVNDPKRFNDNYRRYIERQFREQIGFPGTPIRLLWRGKK 438 >gi|71902945|ref|YP_279748.1| GTP-binding protein EngA [Streptococcus pyogenes MGAS6180] gi|123640474|sp|Q48V63|DER_STRPM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|71802040|gb|AAX71393.1| GTP-binding protein [Streptococcus pyogenes MGAS6180] Length = 436 Score = 226 bits (575), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 138/467 (29%), Positives = 244/467 (52%), Gaps = 41/467 (8%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AIVG PNVGKSTLFNR+ +++++V + G+TRDR+Y F+++DT GI D Sbjct: 5 TVAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRQFSLIDTGGI-DD 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + +Q+ Q ++A+ EA +I+F++ K G+T D ++ L + N P+I+ NK+D Sbjct: 64 VDAPFMEQIKHQAQIAMEEADVIVFVVSGKEGVTDADEYVSKILYRTNTPVILAVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + Y+ YSL + +S+ H +GT ++ I + N P+E E N Sbjct: 124 PEMRNDIYDFYSLGLGDPYPVSSVHGIGTGDVLDEIVE-------NLPVEEAEEN----- 171 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 +R +++GRPNVGKS+LIN +LG +R++ +G TRD++ Sbjct: 172 -----------------DDIIRFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAID 214 Query: 244 ISW-NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + + + DTAGMRK +I E+ E+ +V ++M+++ + +++++A + Sbjct: 215 THFTDADGQEFTMIDTAGMRKSGKIYENTEKYSVMRAMRAIDRSDVVLMVINAEEGIREY 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLL-----QDLRTKAIKNLPQIGDIYINTIS 357 D RI G +++ +NKWD + DK N D+R + + L I+++ ++ Sbjct: 275 DKRIAGFAHEAGKGMIIVVNKWDTI-DKDNHTVAKWEADIRDQ-FQFLTYAPIIFVSALT 332 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 + L DL + I++ RI ++ LN + NP PT + ++ Y TQ+ Sbjct: 333 KQRLNKLPDL---IKRISESQNKRIPSAVLNDVIMDAIAINPTPTDKGKRLKIFYATQVS 389 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 PP+F++F + SY R+L N++R F+ G PI + + K Sbjct: 390 VKPPTFVVFVNEEELMHFSYLRFLENQIRAAFTFEGTPIHLIARKRK 436 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 68/132 (51%), Gaps = 17/132 (12%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRL---YGQAIINGVIFNIVDTA 58 I +++G PNVGKS+L N ++ + + G TRD + + A +G F ++DTA Sbjct: 174 IIRFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTHFTDA--DGQEFTMIDTA 231 Query: 59 GI-------ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKN 111 G+ + + S+ + M AI+ + ++L +I+++ GI YD I F + Sbjct: 232 GMRKSGKIYENTEKYSVMRAMR-----AIDRSDVVLMVINAEEGIREYDKRIAGFAHEAG 286 Query: 112 IPIIIVSNKMDT 123 +IIV NK DT Sbjct: 287 KGMIIVVNKWDT 298 >gi|295839702|ref|ZP_06826635.1| ribosome-associated GTPase EngA [Streptomyces sp. SPB74] gi|295827618|gb|EFG65509.1| ribosome-associated GTPase EngA [Streptomyces sp. SPB74] Length = 488 Score = 226 bits (575), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 143/476 (30%), Positives = 235/476 (49%), Gaps = 49/476 (10%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD-- 62 +A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ +A G F +VDT G Sbjct: 52 LAVVGRPNVGKSTLVNRIIGRREAVVEDRPGVTRDRVTYEAEWAGRRFKLVDTGGWEQDV 111 Query: 63 -GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 G + S+A Q E AI + ++F++D+ G T D A+ LRK P+++ +NK+ Sbjct: 112 LGIDASVAA----QAEYAIEASDAVVFVVDATVGATDTDEAVVRLLRKAGKPVVLCANKV 167 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D + + ++SL E +SA H GT ++ + + Sbjct: 168 DGPSGEADAAMLWSLGLGEPHPVSALHGRGTGDMLDAVLEALP----------------- 210 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 E+PKE P R+A++GRPNVGKS+L+N+L G +R++ Q+G TRD Sbjct: 211 -EAPKETFGG------TGTGGPRRVALIGRPNVGKSSLLNKLAGEDRVVVNEQAGTTRDP 263 Query: 242 V-------SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLD 294 V ++W + DTAG+RK + + + ++ +V E +VL+D Sbjct: 264 VDELIELGGVTWKF-------VDTAGIRKRVHLQQGADYYASLRTAAAVEKAEVAVVLID 316 Query: 295 ATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYIN 354 QD RI+ + G A+VLA NKWD + ++ L + + L Q+ Sbjct: 317 GADSISVQDQRILTMAVDAGRALVLAYNKWDTLDEERRYY--LEREIERELGQVAWAPRV 374 Query: 355 TISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYIT 414 IS RTG ++ L+ ++ W+ R+ T LN++L + +P P + R+ + T Sbjct: 375 NISARTGRHMEKLVPALETALAGWEARVPTGRLNAFLGELVAAHPHPVRGGKQPRILFGT 434 Query: 415 QIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 Q + PP F++F + I Y+R++ RLR F G P+++ + + KK Sbjct: 435 QAGTKPPRFVLFAS--GFIEAGYRRFIERRLREEFGFEGTPVQISVRVREKRGRKK 488 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 56/216 (25%), Positives = 98/216 (45%), Gaps = 23/216 (10%) Query: 169 NHPLEMIENNKRNEESPKE--NITSEGKSSVKNISK--------PL-RIAVVGRPNVGKS 217 +HP+E E+ + + + +E V+++ PL R+AVVGRPNVGKS Sbjct: 4 HHPIEGEEHGALGDAEYERFMELAAEEGFDVEDVEDAIGEAGHGPLPRLAVVGRPNVGKS 63 Query: 218 TLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVK 277 TL+NR++G + + G+TRD V+ W ++ DT G + ++ Sbjct: 64 TLVNRIIGRREAVVEDRPGVTRDRVTYEAEWAGRRFKLVDTGGWEQD---VLGIDASVAA 120 Query: 278 KSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDL 337 ++ ++ + + ++DAT+ D +V + G VVL NK D S + + Sbjct: 121 QAEYAIEASDAVVFVVDATVGATDTDEAVVRLLRKAGKPVVLCANKVDGPSGEADAAM-- 178 Query: 338 RTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 L +G + +S G G D++ +VLE Sbjct: 179 -------LWSLGLGEPHPVSALHGRGTGDMLDAVLE 207 >gi|290961544|ref|YP_003492726.1| GTPase [Streptomyces scabiei 87.22] gi|260651070|emb|CBG74191.1| putative GTPase [Streptomyces scabiei 87.22] Length = 488 Score = 226 bits (575), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 141/469 (30%), Positives = 238/469 (50%), Gaps = 54/469 (11%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD-- 62 +A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ +A G F +VDT G Sbjct: 51 LAVVGRPNVGKSTLVNRIIGRREAVVEDKPGVTRDRVTYEAEWAGRRFKVVDTGGWEQDV 110 Query: 63 -GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 G + S+A Q E AI A ++F++D+K G+T D A+ LRK N P+++ +NK+ Sbjct: 111 LGIDASVAA----QAEYAIEAADAVVFVVDAKVGVTDTDEAVVRLLRKANKPVVLCANKV 166 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D + + ++SL E +S+ H GT ++ + + Sbjct: 167 DGPSGEADATALWSLGIGEPHPVSSLHGRGTGDMLDAVLEALP----------------- 209 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 E+P+++ + + P RIA++GRPNVGKS+L+N++ R++ +G TRD Sbjct: 210 -EAPEQSFGT-------AVGGPRRIALIGRPNVGKSSLLNKVANEERVVVNEIAGTTRDP 261 Query: 242 V-------SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLD 294 V ++W + DTAG+RK + + + ++ +V E ++L+D Sbjct: 262 VDELIELGGVTWKF-------VDTAGIRKRVHLQQGADYYASLRTAAAVEKAEVAVILID 314 Query: 295 ATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSD--KLNLLQDLRTKAIKNLPQIGDIY 352 A+ QD RIV G A+V+A NKWD + + + L +++ T+ QI Sbjct: 315 ASESISVQDQRIVTMAVEAGRALVVAYNKWDTLDEERRYYLEREIETE----FAQIAWAP 370 Query: 353 INTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKY 412 +S RTG ++ L+ ++ W+TR+ T LN++L + +P P + R+ + Sbjct: 371 RVNVSARTGRHMEKLVPAIETALAGWETRVPTGRLNAFLGELVAAHPHPIRGGKQPRILF 430 Query: 413 ITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 TQ + PP F++F + I Y+R++ RLR F G PI + + Sbjct: 431 GTQAGTKPPRFVLFAS--GFIEAGYRRFIERRLREEFGFEGTPIHISVR 477 >gi|167041117|gb|ABZ05877.1| putative GTPase of unknown function [uncultured marine microorganism HF4000_001A02] Length = 438 Score = 226 bits (575), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 146/457 (31%), Positives = 232/457 (50%), Gaps = 26/457 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKST FNR+++++ A+V GITRDR+YG G VDT G Sbjct: 6 IAIVGRPNVGKSTFFNRVLRQRKAIVDAMEGITRDRIYGDMDWVGHNLTFVDTGGYIPED 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + Q + A+ EA LIL ++D + T D + F+R+ I+V NK DT Sbjct: 66 VDIFNSAIRQQAQAAVAEADLILLMVDGREDPTASDKTLAQFVRETGKKSILVVNKCDTL 125 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 Y L + + +S+ T +L ++ K K + P ++E + Sbjct: 126 ALDEQVNGFYKLGIEPMHPVSSLSGRLTGDLLDLVLKQLDLK--DRP-PIVEED------ 176 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 K +R+A+VG PNVGKS+L N LL + + +G TRDS+ Sbjct: 177 -----------------KGMRLAIVGMPNVGKSSLTNALLKKEQSIVTPIAGTTRDSIDS 219 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + I + DTAG+RK S++++S+E + ++ +++ C+ +VL+D F KQD Sbjct: 220 VLKYYGNEITLVDTAGLRKRSKVSDSIEFYSSLRTQRAIEYCDVALVLIDGEKGFSKQDK 279 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 I+D V G ++L +NKWD+V + ++D + + I IS T + + Sbjct: 280 SILDYVIKKGKGLILLVNKWDLVDKDTHTMKDFTDEIAYQFRSLAHYPILFISALTRQRI 339 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 ++ + ++ + K ITTS LN +L+K + PP + L Y+TQ+ S P F+ Sbjct: 340 SRVLGTAHDVYESRKNSITTSKLNKFLRKLIARQSPPATHGKVINLNYMTQVHSGPHLFV 399 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 IF P +P SY+R++ N+LR F L GIPIR+ F+ Sbjct: 400 IFSNQPKLVPTSYRRFIENQLREQFDLFGIPIRISFR 436 >gi|16330798|ref|NP_441526.1| GTP-binding protein EngA [Synechocystis sp. PCC 6803] gi|8928101|sp|P74120|DER_SYNY3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|1653291|dbj|BAA18206.1| slr1974 [Synechocystis sp. PCC 6803] Length = 452 Score = 226 bits (575), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 133/462 (28%), Positives = 229/462 (49%), Gaps = 31/462 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKST NRL + A+V + PGITRDR Y A F +VDT G+ Sbjct: 6 VAIIGRPNVGKSTFVNRLAGNQQAIVHDQPGITRDRTYRPAFWRDRDFQVVDTGGLVFND 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 + ++ +Q LA+ EA +F++D + G T D I +LR++++P+I+ NK ++ Sbjct: 66 DSEFLPEIREQANLALAEAKAAIFVVDGQQGPTASDEEIAQWLRQQSVPVILAVNKCESP 125 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 E + L E +SA H GT +L + +Y P +E Sbjct: 126 DQGAIQAAEFWHLGLGEPYPMSAIHGSGTGDLLDALL-----EYLPAP----------QE 170 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 P+E+ +++A+VGRPNVGKS+L+N L G R + SG TRD++ Sbjct: 171 EPEED--------------EIKVAIVGRPNVGKSSLLNALTGEQRAIVSPISGTTRDAID 216 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + + DTAG+R+ + E + ++ +++R + + +LD +QD Sbjct: 217 MVVERNGQKYRLIDTAGIRRKKNVDYGAEFFGINRAFKAIRRADVVLFVLDVLDGVTEQD 276 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 L++ + G AVVL +NKWD V + + R + + L + + +S +TG Sbjct: 277 LKLAGRIIEDGRAVVLVINKWDAVEKDSYTIYEHREQLMARLYFMDWAEMIFVSAQTGLR 336 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKT-QLQNPPPTIFNRYNRLKYITQIQSSPPS 422 + ++ V + + R+TT+ +N L++ +PP T + ++ Y TQ+ + PP+ Sbjct: 337 VQKILDCVDIAAQEHRRRVTTAVINEVLEEAVSWHSPPTTRQGKQGKIYYGTQVSTQPPA 396 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 +F PN+ ++Y+RY+ + R G PIR+ ++ K Sbjct: 397 IALFVNDPNRFNDNYRRYIEKQFRKQLGFFGSPIRLFWRGKK 438 >gi|288818845|ref|YP_003433193.1| GTP-binding protein [Hydrogenobacter thermophilus TK-6] gi|288788245|dbj|BAI69992.1| GTP-binding protein [Hydrogenobacter thermophilus TK-6] gi|308752432|gb|ADO45915.1| ribosome-associated GTPase EngA [Hydrogenobacter thermophilus TK-6] Length = 432 Score = 225 bits (574), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 128/461 (27%), Positives = 239/461 (51%), Gaps = 33/461 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + IVG PNVGKSTLFNR+V ++ ++V PG+TRD + +A F + DT GI +G Sbjct: 5 VLIVGRPNVGKSTLFNRIVGRRKSIVHGIPGVTRDIIESEASWKDKKFMVADTGGIFEGG 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +++++ Q + A++EA +ILF++D + GIT D I L + +V NK+D+ Sbjct: 65 E-EMSEKVEKQVKKALSEAQVILFVVDGREGITAGDEYIARMLYPYREKVFLVVNKIDSE 123 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 Q+N Y+ Y+L F+++ +SA+H +G +EL + + P+ P+++ + Sbjct: 124 KLQKNVYDFYALGFEKVFPVSAQHGIGVAELLDALHSLL----PDEPVKLEYSG------ 173 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 ++++ VGRPNVGKS+LIN +LG R++ +G TRD+V + Sbjct: 174 -------------------IKVSFVGRPNVGKSSLINAILGSERVIVSEVAGTTRDAVEV 214 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + +K + DTAG+R+ ++ +E V +S++++ + ++LD + QD Sbjct: 215 PFEYKGKEFVLIDTAGIRRRPKVEYGVEFFAVGRSIKAIEMSDVVCLVLDISEGITNQDK 274 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 +I + V+ NK+D+V QD K + L ++ + I EG+ Sbjct: 275 KIAGLIERRFKGCVIVANKFDLVKATKEQAQDYIRKELHFLDFAPIVFTSAIR---QEGI 331 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 D++ + + + + + + TS++N +QK + PP R ++ Y Q ++ PP+ Sbjct: 332 QDILDNAILVYQDYTKQHKTSFINRAVQKVLKEKAPPLHKGREVKVYYAHQEEAKPPTIA 391 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 I +P+ ESY+ + + RLR + P+++ + ++ Sbjct: 392 IITNYPDGWRESYRTFFVRRLREYLGIRYSPLKLIVRGRED 432 Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 80/164 (48%), Gaps = 12/164 (7%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP 264 ++ +VGRPNVGKSTL NR++G + + G+TRD + +WK+ + DT G+ + Sbjct: 4 QVLIVGRPNVGKSTLFNRIVGRRKSIVHGIPGVTRDIIESEASWKDKKFMVADTGGIFEG 63 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 E + +K K+ +++ + + ++D D I ++ V L +NK Sbjct: 64 G---EEMSEKVEKQVKKALSEAQVILFVVDGREGITAGDEYIARMLYPYREKVFLVVNKI 120 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLM 368 D S+KL K + + +G + +S + G G+ +L+ Sbjct: 121 D--SEKLQ-------KNVYDFYALGFEKVFPVSAQHGIGVAELL 155 >gi|227496096|ref|ZP_03926402.1| bifunctional cytidylate kinase/GTP-binding protein [Actinomyces urogenitalis DSM 15434] gi|226834330|gb|EEH66713.1| bifunctional cytidylate kinase/GTP-binding protein [Actinomyces urogenitalis DSM 15434] Length = 720 Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 140/461 (30%), Positives = 238/461 (51%), Gaps = 37/461 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI---A 61 +A+VG PNVGKSTL NR++ +++AVV + PG+TRDR+ A G F IVDT G Sbjct: 285 LAVVGRPNVGKSTLVNRVLGRRVAVVQDTPGVTRDRVSYPAEWAGRRFTIVDTGGWELDV 344 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 G + ++A Q E+A+ A ++ ++D++ GIT D ++ LR+ P+++ +NK+ Sbjct: 345 KGLDQAVAT----QAEVAVELADAVILVVDAQVGITATDASVVKMLRRSGKPVVLAANKV 400 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D+ + + +++L E +SA H G+ E+ I E + Sbjct: 401 DSAAQEGDAAALWNLGLGEPYPVSALHGRGSGEVLDAAMAILP-----------EVSSVA 449 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 SP+ + R+A+VGRPNVGKS+L+N + G R++ +G TRD Sbjct: 450 GPSPEHGSLN-------------RVALVGRPNVGKSSLLNSIAGSQRVVVNELAGTTRDP 496 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 V DTAG+R+ + + + V ++ ++ E +VLLDA+ + Sbjct: 497 VDEVIELDGRQWLFIDTAGIRRRVKQSRGADYYAVLRTQGAIEKAEVAVVLLDASESVSE 556 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIG-DIYINTISGRT 360 QD+R++ V + G A+VL NKWD+V ++ + T+ +L + +IN ++ RT Sbjct: 557 QDVRVIQQVVDAGRALVLVNNKWDLVDEERQKMLTWETE--HDLAHVAWAPHIN-LAART 613 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G + L+ ++ + W TRI T LN++L + Q P P + R+ + TQ+Q++P Sbjct: 614 GWHTNRLVRALDAALEGWTTRIPTGRLNAFLGELQAATPHPLRGGKQPRILFATQVQTAP 673 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 P +IF T + Y+R++ RLR F G PI++ + Sbjct: 674 PRIVIFTT--GFLDAGYRRFIERRLREEFGFVGSPIQIGVR 712 >gi|139474375|ref|YP_001129091.1| GTP-binding protein EngA [Streptococcus pyogenes str. Manfredo] gi|166225865|sp|A2RGB0|DER_STRPG RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|134272622|emb|CAM30889.1| GTP-binding protein EngA [Streptococcus pyogenes str. Manfredo] Length = 436 Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 138/467 (29%), Positives = 243/467 (52%), Gaps = 41/467 (8%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AIVG PNVGKSTLFNR+ +++++V + G+TRDR+Y F+++DT GI D Sbjct: 5 TVAIVGRPNVGKSTLFNRIAGERISIVEDIEGVTRDRIYATGEWLNRQFSLIDTGGI-DD 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + +Q+ Q ++A+ EA +I+F++ K G+T D ++ L + N P+I+ NK+D Sbjct: 64 VDAPFMEQIKHQAQIAMEEADVIVFVVSGKEGVTDADEYVSKILYRTNTPVILAVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + Y+ YSL + +S+ H +GT ++ I + N P+E E N Sbjct: 124 PEMRNDIYDFYSLGLGDPYPVSSVHGIGTGDVLDAIVE-------NLPVEEAEEN----- 171 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 +R +++GRPNVGKS+LIN +LG +R++ +G TRD++ Sbjct: 172 -----------------DDIIRFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAID 214 Query: 244 ISW-NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + + + DTAGMRK +I E+ E+ +V ++M+++ +++++A + Sbjct: 215 THFTDADGQEFTMIDTAGMRKSGKIYENTEKYSVMRAMRAIDRSGVVLMVINAEEGIREY 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLL-----QDLRTKAIKNLPQIGDIYINTIS 357 D RI G +++ +NKWD + DK N D+R + + L I+++ ++ Sbjct: 275 DKRIAGFAHEAGKGMIIVVNKWDTI-DKDNHTVAKWEADIRDQ-FQFLTYAPIIFVSALT 332 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 + L DL + I++ RI ++ LN + NP PT + ++ Y TQ+ Sbjct: 333 KQRLNKLPDL---IKRISESQNKRIPSAVLNDVIMDAIAINPTPTDKGKRLKIFYATQVS 389 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 PP+F++F + SY R+L N++R F+ G PI + + K Sbjct: 390 VKPPTFVVFVNEEELMHFSYLRFLENQIRAAFTFEGTPIHLIARKRK 436 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 68/132 (51%), Gaps = 17/132 (12%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRL---YGQAIINGVIFNIVDTA 58 I +++G PNVGKS+L N ++ + + G TRD + + A +G F ++DTA Sbjct: 174 IIRFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTHFTDA--DGQEFTMIDTA 231 Query: 59 GI-------ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKN 111 G+ + + S+ + M AI+ + ++L +I+++ GI YD I F + Sbjct: 232 GMRKSGKIYENTEKYSVMRAMR-----AIDRSGVVLMVINAEEGIREYDKRIAGFAHEAG 286 Query: 112 IPIIIVSNKMDT 123 +IIV NK DT Sbjct: 287 KGMIIVVNKWDT 298 >gi|291297034|ref|YP_003508432.1| small GTP-binding protein [Meiothermus ruber DSM 1279] gi|290471993|gb|ADD29412.1| small GTP-binding protein [Meiothermus ruber DSM 1279] Length = 453 Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 137/476 (28%), Positives = 234/476 (49%), Gaps = 45/476 (9%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVK------------KKMAVVGNHPGITRDRLYGQAIING 49 +Y + IVG PNVGKS+LFN+L+ + AVV + PG+TRD G Sbjct: 1 MYRVVIVGRPNVGKSSLFNKLLGLRAAPEKAAKAGSQFAVVADVPGVTRDLKEGVVESEQ 60 Query: 50 VIFNIVDTAGIADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRK 109 F +VDT G+ G K++ + E AI +A L+LF +D ++ I D + FLR+ Sbjct: 61 GRFKLVDTGGLWSGDVWE--KKIKQKVERAIADADLVLFAVDGRSDIVTADLEVADFLRR 118 Query: 110 KNIPIIIVSNKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPN 169 + P+++V+ K+D + Y+L F E V SA H G EL I+ + Sbjct: 119 QGKPVLLVATKIDDPKHEAYLGSFYALGFGEPVPTSAAHSRGFDELLERIWALL------ 172 Query: 170 HPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRL 229 P+ R ES E + P+R+A+VGRPN GKS+L+N +LG R+ Sbjct: 173 -PI-------RQGESEPEVV-------------PIRLAIVGRPNAGKSSLLNAILGEERV 211 Query: 230 LTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETT 289 + G TRDS+ + +++ + DTAG+RK R +E++ + ++ Q++R + Sbjct: 212 IVSEIPGTTRDSIDVEFDYGGSRFLLVDTAGIRK--RPETGVEEQAIVRAHQAIRDADVV 269 Query: 290 IVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIG 349 ++++D +L++ + G V+L + KWD++ K + +R L + Sbjct: 270 LLVIDPK-ELGDHELKLANEALEAGKPVILTITKWDLIETK-EEARRVRADLALKLSHVQ 327 Query: 350 DIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNR 409 + + +S T + L L+ + +L + R T+ LN WL Q P + + Sbjct: 328 HLPLLYVSSVTKQNLHKLLSEAARLYELARVRFETAELNRWLSVWSTQTLLPNFKGKPLK 387 Query: 410 LKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 L ++TQ + +PP+F+ FC P + +++ +L NR+ + L IP RM F+ + Sbjct: 388 LFFLTQPEVAPPTFVFFCNHPEFVTRAFEGFLRNRIGEDLGLREIPFRMVFRGRRE 443 >gi|171780272|ref|ZP_02921176.1| hypothetical protein STRINF_02060 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171281620|gb|EDT47055.1| hypothetical protein STRINF_02060 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 437 Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 135/462 (29%), Positives = 240/462 (51%), Gaps = 30/462 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AIVG PNVGKSTLFNR+ +++++V + G+TRDR+Y F+++DT GI D Sbjct: 5 TVAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTTGEWLNRKFSLIDTGGI-DD 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + +Q+ Q ++A+ EA +I+F++ K G+T D ++ L + N P+I+V NK+D Sbjct: 64 VDAPFMEQIKHQADIAMTEADVIVFVVSGKEGVTDADEYVSKILYRTNKPVILVVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + Y+ YSL + +S+ H +GT ++ I + N P+E EE Sbjct: 124 PEMRNDIYDFYSLGLGDPYPVSSVHGIGTGDVLDAIVE-------NLPVE-------EEE 169 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 +I ++ +++GRPNVGKS+LIN +LG R++ +G TRD++ Sbjct: 170 DENPDI--------------IKFSLIGRPNVGKSSLINAILGEERVIASPIAGTTRDAID 215 Query: 244 ISW-NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 ++ + + + DTAGMRK ++ E+ E+ +V +SM+++ + +++++A + Sbjct: 216 TNFTDSEGQEYTMIDTAGMRKSGKVYENTEKYSVMRSMRAIDRSDIVLMVINAEEGIREY 275 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D RI G +++ +NKWD + + + + I +S T + Sbjct: 276 DKRIAGFAHEAGKGIIIVVNKWDTIEKDNHTVAKWEEDIRDQFQFLSYAPIIFVSAATKQ 335 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 L+ L + +I++ RI ++ LN + NP PT + ++ Y TQ+ PP+ Sbjct: 336 RLNKLPEMIKKISESQNKRIPSAVLNDVIMDAIAINPTPTDKGKRLKIFYGTQVSVKPPT 395 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 F+IF + SY R+L N++R F G PI + + K Sbjct: 396 FVIFVNEEELMHFSYMRFLENQIRAAFGFEGTPINLIARKRK 437 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 39/130 (30%), Positives = 67/130 (51%), Gaps = 13/130 (10%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIIN-GVIFNIVDTAGI 60 I +++G PNVGKS+L N ++ ++ + G TRD + + G + ++DTAG+ Sbjct: 175 IIKFSLIGRPNVGKSSLINAILGEERVIASPIAGTTRDAIDTNFTDSEGQEYTMIDTAGM 234 Query: 61 -------ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIP 113 + + S+ + M AI+ + ++L +I+++ GI YD I F + Sbjct: 235 RKSGKVYENTEKYSVMRSMR-----AIDRSDIVLMVINAEEGIREYDKRIAGFAHEAGKG 289 Query: 114 IIIVSNKMDT 123 IIIV NK DT Sbjct: 290 IIIVVNKWDT 299 >gi|33865191|ref|NP_896750.1| GTP-binding protein EngA [Synechococcus sp. WH 8102] gi|41017009|sp|Q7U8G2|DER_SYNPX RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|33638875|emb|CAE07172.1| putative GTP-binding protein [Synechococcus sp. WH 8102] Length = 455 Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 131/463 (28%), Positives = 228/463 (49%), Gaps = 30/463 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKSTL NRL + + A+V + PG+TRDR Y F +VDT G+ Sbjct: 6 VAIIGRPNVGKSTLVNRLCRSREAIVHDEPGVTRDRTYQDGYWGDREFKVVDTGGLVFDD 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 + ++ +Q LA+ EA + + ++D + GIT D +I FLR + P ++ NK ++ Sbjct: 66 DSEFLPEIREQAALAMEEASVAVVIVDGQQGITAADESIAEFLRSRPCPTLLAVNKCESP 125 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 E +SL E ISA H +GT +L + K ++E Sbjct: 126 EQGLAMAAEFWSLGLGEPHPISAIHGVGTGDLLDQVLTFLPPK--------------DQE 171 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 +E +P+++A++GRPNVGKS+L+N + G R + G TRD++ Sbjct: 172 GDEE--------------EPIQMAIIGRPNVGKSSLLNAICGEQRAIVSPIRGTTRDTID 217 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + +N P + DTAG+R+ + E + +S +++ + ++++DA +QD Sbjct: 218 TNIVRENRPWRLVDTAGIRRRRSVNYGPEYFGINRSFKAIDRSDVCVLVIDALDGVTEQD 277 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 R+ + G A V+ +NKWD V + + + + L + + S TG+ Sbjct: 278 QRLAGRIEEDGRACVVVVNKWDAVEKDSHTMTAMEKELRAKLYFLDWAPMLFTSALTGQR 337 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKT-QLQNPPPTIFNRYNRLKYITQIQSSPPS 422 +D + + + R++TS +N L++ ++PP T R RL Y TQ+ S PPS Sbjct: 338 VDSIFALAALAVEQHRRRVSTSVVNEVLKEALSWRSPPTTRGGRQGRLYYGTQVASRPPS 397 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 F +F P ++Y+RY+ ++R G P+++ ++ + Sbjct: 398 FTLFVNDPKLFGDTYRRYVERQIREGLGFDGTPVKLYWRGKQQ 440 >gi|297746328|emb|CBI16384.3| unnamed protein product [Vitis vinifera] Length = 658 Score = 225 bits (573), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 152/478 (31%), Positives = 251/478 (52%), Gaps = 48/478 (10%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 ++ + IVG PNVGKS LFNRLV A+V + PG+TRDRLYG+A F ++DT G+ Sbjct: 186 LLPRVTIVGRPNVGKSALFNRLVGGNKAIVVDEPGVTRDRLYGRAFWGDYEFMVIDTGGV 245 Query: 61 ADGKNCSIAK-QMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRK--KNIPIIIV 117 +I+K Q N Q AI E+ +I+FL+D +AG++ D I +LRK N I++ Sbjct: 246 -----LTISKSQDNKQATAAIEESSVIIFLVDGQAGLSAADVEIADWLRKNYSNKCIVLA 300 Query: 118 SNKMDT-RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIE 176 NK ++ + E +SL F + ISA GT EL L+++ Sbjct: 301 VNKCESPKKGIMQALEFWSLGFTPL-PISAVSGTGTGEL----------------LDLVC 343 Query: 177 NNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSG 236 + + E P EN+ E +N IA+VGRPNVGKS+++N L+G +R + SG Sbjct: 344 SGLKKIEDP-ENLDGE-----ENYVPA--IAIVGRPNVGKSSILNALVGEDRTIVSPVSG 395 Query: 237 ITRDSVSISWNWKN-HPIEIFDTAGMRKPSRITES---LEQKTVKKSMQSVRTCETTIVL 292 TRD++ + + + DTAG+R+ + + S E +V ++ +++R + ++ Sbjct: 396 TTRDAIDTEFTGPDGQKYRLIDTAGIRRRAAVASSGSTTEALSVNRAFRAIRRSDVVALV 455 Query: 293 LDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDK-----LNLLQDLRTKAIKNLPQ 347 ++A +QD RI + + G ++ +NKWD + +K QD+R K ++ L Sbjct: 456 IEAMACITEQDYRIAERIEREGKGCLIVVNKWDTIPNKNQQTATYYEQDVREK-LRVLGW 514 Query: 348 IGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKT-QLQNPPPTIFNR 406 +Y I+G + +D ++V+ + K R++TS LN +Q+ ++PP + Sbjct: 515 APIVYSTAIAGHS---VDKIIVAASTVEKERSRRLSTSILNQVVQEALAFKSPPRNRGGK 571 Query: 407 YNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 R+ Y TQ PP+F+ F PE+Y+RY+ +LR + SG PIR+ ++S + Sbjct: 572 RGRVYYCTQAAIRPPTFVFFVNDAKLFPETYRRYMEKQLRSDAGFSGTPIRLLWRSRR 629 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 62/205 (30%), Positives = 101/205 (49%), Gaps = 19/205 (9%) Query: 175 IENNKRNEESPKENITSEGKSSVKNISKPL---RIAVVGRPNVGKSTLINRLLGYNRLLT 231 IE + NE + + KS+ +N+ R+ +VGRPNVGKS L NRL+G N+ + Sbjct: 156 IEEDGANELKGRGGKQKKSKSTTRNVIPDHLLPRVTIVGRPNVGKSALFNRLVGGNKAIV 215 Query: 232 GSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIV 291 + G+TRD + W ++ + DT G+ +T S Q K++ ++ I Sbjct: 216 VDEPGVTRDRLYGRAFWGDYEFMVIDTGGV-----LTISKSQDN-KQATAAIEESSVIIF 269 Query: 292 LLDATIPFEKQDLRIVDSVFN--TGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIG 349 L+D D+ I D + + +VLA+NK + S K ++Q L ++ P Sbjct: 270 LVDGQAGLSAADVEIADWLRKNYSNKCIVLAVNKCE--SPKKGIMQALEFWSLGFTP--- 324 Query: 350 DIYINTISGRTGEG-LDDLMVSVLE 373 + I+ +SG TG G L DL+ S L+ Sbjct: 325 -LPISAVSG-TGTGELLDLVCSGLK 347 >gi|323697490|ref|ZP_08109402.1| ribosome-associated GTPase EngA [Desulfovibrio sp. ND132] gi|323457422|gb|EGB13287.1| ribosome-associated GTPase EngA [Desulfovibrio desulfuricans ND132] Length = 505 Score = 225 bits (573), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 136/474 (28%), Positives = 247/474 (52%), Gaps = 38/474 (8%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL++K ++ + PG+TRDR+YG+ I+ F++VDT G+ Sbjct: 1 MLPIVALVGRPNVGKSTLFNRLLRKSRSITHDLPGVTRDRIYGECIMGETRFDLVDTGGM 60 Query: 61 ADGKNCS--IAKQMND----QTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPI 114 + ++K D Q + AINEA+ I+F++D K G+TP D F+R+ P+ Sbjct: 61 VLESEATPELSKDFEDEIFEQAQEAINEANAIVFVVDGKEGLTPLDRQAAEFVRRSGKPV 120 Query: 115 IIVSNKMD-TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLE 173 +++ NK+D + E + L E + +SA H E+ + + + P+E Sbjct: 121 LMLINKVDGSEFEAHMTAEFHELGI-EFLPVSAAHGYNLHEVRDRVRRFVED--LGIPVE 177 Query: 174 MIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGS 233 E++ + K LR+ ++GRPN GKS++IN L+G +RL+ Sbjct: 178 --EDD--------------------GVEKGLRLTMLGRPNAGKSSIINALIGKDRLIVSD 215 Query: 234 QSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLL 293 +G TRDS+ +++ DTAG+RK + I + LE+ +V +++++ + + T++ + Sbjct: 216 VAGTTRDSIDVTFEKGGKRYTFVDTAGVRKRANIQDHLEKISVIRALKNSKRSDVTVLTI 275 Query: 294 DATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMV--SDKLNLLQDLRTKAIKNLPQIGDI 351 D T+ +QD R+++ + ++ +NK D++ S+ L+ R + ++ +P + + Sbjct: 276 DITLGVGRQDKRLIEFLAKEKTPFMVVVNKADLIPRSETNRALEAFREE-LRLVPHVPVV 334 Query: 352 YINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLK 411 + + G G+ L+ + K R+ T LN +Q + PP + + + Sbjct: 335 MTSAVKGL---GIGKLLPLAETMRKECDIRVGTGELNRIMQAVVEKLQPPVVKRKRPKFY 391 Query: 412 YITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 Y+TQ P+F+ FC + SY RYL N+ R + P+ + F+SS + Sbjct: 392 YVTQADEPIPTFVFFCNDHTIVKTSYVRYLENQFRKMLGIKSAPVNVVFRSSHD 445 >gi|194337372|ref|YP_002019166.1| small GTP-binding protein [Pelodictyon phaeoclathratiforme BU-1] gi|238693397|sp|B4SED0|DER_PELPB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|194309849|gb|ACF44549.1| small GTP-binding protein [Pelodictyon phaeoclathratiforme BU-1] Length = 437 Score = 225 bits (573), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 146/465 (31%), Positives = 248/465 (53%), Gaps = 44/465 (9%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI-ADG 63 IA+VG PNVGKSTLFNR+++++ A+V PG+TRDR + G F ++DT G ADG Sbjct: 5 IALVGRPNVGKSTLFNRILRQRSAIVDPTPGVTRDRHIAEGEWQGKQFLLMDTGGYNADG 64 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRK--KNIPIIIVSNKM 121 S+A M +QT +AI +A +++FL D +AG++ D + L++ ++ + V NK+ Sbjct: 65 DTISMA--MLEQTLMAIRDADIVIFLTDVRAGLSYEDLELGRLLQRTFQHKQLFFVVNKV 122 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 +T + F ISA G +++ I + + E K+ Sbjct: 123 ETPQLSLDAESFIKTGFTAPYFISARDGSGVADMLDDILE-----------SLPETEKQL 171 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 +E KE+ +++AVVGRPNVGKS+ +N LLG NRL+ + G TRD+ Sbjct: 172 QE--KES--------------AIQLAVVGRPNVGKSSFVNSLLGSNRLIVSNIPGTTRDA 215 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 + + K + DTAG+RK ++I +E + ++ +++ C+ +V+LDA EK Sbjct: 216 IDSRFIRKQQEFILIDTAGLRKRTKIDAGIEYYSSLRTEKAIERCDVALVMLDAAPGIEK 275 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAI------KNLPQIGDIYINT 355 QD++I++ +L +NKWD++ +D +T I N+ + + + Sbjct: 276 QDMKIINMAVERKKGALLLINKWDLIE------KDSKTSKIYEETLRSNMGNLSYVPVLF 329 Query: 356 ISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQ 415 IS T + L + + +I++ +I+TS LN +L++ P T + ++KY+TQ Sbjct: 330 ISALTKKNLYRAIDTAQQISQNRSRKISTSVLNKFLEEALSHTHPSTKSGKELKIKYMTQ 389 Query: 416 IQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCF 460 I ++ P F FC P + +++++L N+LR +FSL G+PI M F Sbjct: 390 INAAWPVFAFFCNDPLLVQANFRKFLENKLREHFSLEGVPISMRF 434 >gi|163784433|ref|ZP_02179314.1| GTP-binding protein [Hydrogenivirga sp. 128-5-R1-1] gi|159880300|gb|EDP73923.1| GTP-binding protein [Hydrogenivirga sp. 128-5-R1-1] Length = 451 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 134/462 (29%), Positives = 236/462 (51%), Gaps = 20/462 (4%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 +Y +AIVG PNVGKS+LFNR++ +K A+V + PGITRDRL + F +VDT G Sbjct: 1 MYRVAIVGRPNVGKSSLFNRIIGQKKAIVEDIPGITRDRLIQTTEWRNIPFELVDTGGYI 60 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 + + A + Q E + +A + ++DSK G+T D I L K P+ I NK+ Sbjct: 61 ETDDDKFAPFIRKQIEKEMEDADAFILVVDSKTGLTEADKDIARILHKTEKPVYIAVNKV 120 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D + YE Y L F ++ +S G ++L + + P++ ++ + + Sbjct: 121 DNPSQEDTIYEFYELGFDKVFPVSTIQKYGVADLLDEVI----ENIPDYEIQASKEEVKE 176 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 +E K++ +++A++G+PN GKS+++N + G R L + G TRD Sbjct: 177 QEIYKKD--------------EIKVAIIGKPNAGKSSILNAITGEERALVSNIPGTTRDV 222 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 V +N DTAG+RK S++ +E +V +++ +++ + + ++DA + Sbjct: 223 VDTMVKIENKTYRFLDTAGLRKKSKVDYGVEFFSVGRTLDAIKKADVVVHVIDAEQGATE 282 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTG 361 QD +I VV+ +NK D + + +L L + + L + + T+S + Sbjct: 283 QDQKIAHLSQKYYKPVVIVINKIDRLPKRKEVLNSLLKQVKEKLYFLPYAPVLTVSAKKH 342 Query: 362 EGLDDLMVSVLEINK-LWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 +D L+ +V E+ K +WK R++T LN LQ+ Q PP+ + ++ Y TQ++ P Sbjct: 343 INIDKLLKTVEEVYKQVWK-RVSTGQLNKALQQLQSLQAPPSYQGKPLKIYYGTQLEGKP 401 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 P+FL+F +P E+Y ++L N LR P+++ F+ Sbjct: 402 PAFLLFVNYPQGFKENYVKFLENGLRKLLGYDKSPMKLIFRD 443 >gi|239940226|ref|ZP_04692163.1| GTP-binding protein EngA [Streptomyces roseosporus NRRL 15998] gi|239986716|ref|ZP_04707380.1| GTP-binding protein EngA [Streptomyces roseosporus NRRL 11379] gi|291443657|ref|ZP_06583047.1| GTP-binding protein engA [Streptomyces roseosporus NRRL 15998] gi|291346604|gb|EFE73508.1| GTP-binding protein engA [Streptomyces roseosporus NRRL 15998] Length = 489 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 139/462 (30%), Positives = 234/462 (50%), Gaps = 40/462 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD-- 62 +A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ +A G F +VDT G Sbjct: 54 LAVVGRPNVGKSTLVNRIIGRREAVVQDKPGVTRDRVSYEAEWAGRRFKVVDTGGWEQDV 113 Query: 63 -GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 G + S+A Q E AI A ++F++DS G T D A+ LR+ P+++ +NK+ Sbjct: 114 LGLDASVAAQ----AEYAIETADAVVFVVDSTVGATDTDEAVVKLLRRAGKPVVLCANKV 169 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D + + + ++SL E +S+ H GT ++ + + P+ P + Sbjct: 170 DGQSGEADATALWSLGLGEPYPVSSLHGRGTGDMLDAVLEAL----PDAPAQKFGTA--- 222 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 + P RIA++GRPNVGKS+L+N++ G +R++ +G TRD Sbjct: 223 ------------------LGGPRRIALIGRPNVGKSSLLNKVAGEDRVVVNELAGTTRDP 264 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 V N + DTAG+R+ + E + ++ +V E +VL+D++ Sbjct: 265 VDELINLGGITWKFIDTAGIRRRVHLQEGADYYASLRTAAAVEKAEVAVVLIDSSESISV 324 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVSD--KLNLLQDLRTKAIKNLPQIGDIYINTISGR 359 QD RI+ G A+V+A NKWD + + + L +++ T+ L QI +S Sbjct: 325 QDQRIITMAVEAGRAIVVAFNKWDTLDEERRYYLEREIETE----LAQIAWAPRVNVSAV 380 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 TG ++ L+ ++ + W+TR+ T LN++L + NP P + R+ + TQ + Sbjct: 381 TGRHMEKLVPAIETALEGWETRVPTGRLNAFLGEIVASNPHPIRGGKQPRILFGTQAGTK 440 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 PP F++F + + Y+R++ RLR F G PI + + Sbjct: 441 PPRFVLFAS--GFLEHGYRRFVERRLREEFGFEGTPIHISVR 480 >gi|134101736|ref|YP_001107397.1| GTP-binding protein EngA [Saccharopolyspora erythraea NRRL 2338] gi|291003092|ref|ZP_06561065.1| GTP-binding protein EngA [Saccharopolyspora erythraea NRRL 2338] gi|133914359|emb|CAM04472.1| small GTP-binding protein domain [Saccharopolyspora erythraea NRRL 2338] Length = 480 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 146/458 (31%), Positives = 227/458 (49%), Gaps = 33/458 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA-DG 63 +A+VG PNVGKSTL NRL+ ++ AVV + PG+TRDR+ A+ NG F +VDT G D Sbjct: 43 LAVVGRPNVGKSTLVNRLLGRREAVVQDTPGVTRDRVAYDALWNGRRFTVVDTGGWEPDA 102 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 K A + ++ +A IL ++D++ G T + A+ LR+ P+++ +NK+D Sbjct: 103 KGLQAAVAAQAEMAMSTADA--ILLVVDAQVGATATEEAVARVLRRSKRPVLVAANKVDD 160 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 A + ++SL E + +S H G+ +L I +F P+ P E Sbjct: 161 ERAMAEAHALWSLGLGEPMPVSGLHGRGSGDLLDKILAVF----PDVPHEEF-------- 208 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 GK+ P R+A+VG+PNVGKS+L+NRL G R + +G T D V Sbjct: 209 ---------GKT-----GGPRRVALVGKPNVGKSSLLNRLTGELRAVVDDVAGTTVDPVD 254 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 DTAG+RK + E ++ ++ E IVL+DA+ P +QD Sbjct: 255 SLVELDGEVWRFVDTAGLRKRVKTASGTEYYASLRTKAAIEAAEVAIVLVDASQPLTEQD 314 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 LR+ V G A+V+A NKWD+V + + L + + L ++ +S TG Sbjct: 315 LRVFTMVVEAGRALVIAYNKWDLVDE--DRRHQLDKEIDRELVRVRWAERVNVSALTGRA 372 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 + L ++ W TRI T LNSWL +PPP + ++ + TQ S PP+ Sbjct: 373 VGKLAPTLRTALNSWDTRIPTGQLNSWLSDLVAAHPPPVRGGKQPKILFATQAHSRPPTV 432 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 ++F T + Y+R+L +LR F G P+R+ + Sbjct: 433 VLFTT--GFLEAGYRRFLERKLRDTFGFVGSPVRISVR 468 >gi|302797579|ref|XP_002980550.1| hypothetical protein SELMODRAFT_112935 [Selaginella moellendorffii] gi|300151556|gb|EFJ18201.1| hypothetical protein SELMODRAFT_112935 [Selaginella moellendorffii] Length = 471 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 150/487 (30%), Positives = 251/487 (51%), Gaps = 47/487 (9%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPG--ITRDRLYGQAIINGVIFNIVDTAGIA 61 ++ I+G PNVGKS+L+NRLV +K A+V + P +TRD G A ++ + F + D+AG+ Sbjct: 3 SVIILGRPNVGKSSLYNRLVHRKEAIVYDTPDSHVTRDIREGSAKLSDLRFKVFDSAGLE 62 Query: 62 DGK-NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNI--PIIIVS 118 + ++ + T + H LFLID +AG++P D + RK N+ P+++V Sbjct: 63 TSEEGATVLARTTGLTATFLRTCHAALFLIDGRAGVSPLDKEAVMWFRKLNLNLPVVLVV 122 Query: 119 NKMDTRIAQR----NFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEM 174 NK + N E YSL + V +SAE G ++L + I Sbjct: 123 NKAEKITGDHQIMANIAESYSLGLGDPVPVSAETGEGLADLFQRLQPIL----------- 171 Query: 175 IENNKRNEESPKENITSEGKSSVKNIS--KPLRIAVVGRPNVGKSTLINRLLGYNRLLTG 232 ++ KE + E + K++ KPLR+A+ GR NVGKST+IN LL R+LTG Sbjct: 172 --------DAAKEKLVEEEEEEEKSLGGQKPLRLAIAGRTNVGKSTVINSLLRKERVLTG 223 Query: 233 SQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVL 292 + G+TRD+++I + + P+ + DTAG + S++ E + + +S+ T ++ Sbjct: 224 PEPGLTRDAITIDFEFNKKPVRLVDTAGWIQRSQLEEGPMALSAMLARRSLMTAHVVAIV 283 Query: 293 LDAT-IPFEKQDLR-----IVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIK--- 343 LDA I K LR + V + G A+++ +NK D++ + N DLR K ++ Sbjct: 284 LDAQEIAHSKMTLRNSEAALARWVTDEGRALIIVVNKMDVLKGQKN--ADLRKKLMEAVP 341 Query: 344 -----NLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQN 398 LPQ+ + I +S G G +M E W TR++T LN WL K ++ Sbjct: 342 KEIQLTLPQVLGVPIIFVSALKGRGRSTIMKLAFEAYDKWCTRVSTPRLNRWLHKVLARH 401 Query: 399 PPPTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 P R + +YITQ+++ PP+F++F + + R++ N +R +F++ GIP+R+ Sbjct: 402 PKRKDEKRA-KPRYITQVKARPPTFVLFVAGFYSLEDHELRFISNAIREDFNMGGIPVRV 460 Query: 459 CFQSSKN 465 ++ K Sbjct: 461 IQRTKKE 467 >gi|116075028|ref|ZP_01472288.1| GTP-binding protein EngA [Synechococcus sp. RS9916] gi|116067225|gb|EAU72979.1| GTP-binding protein EngA [Synechococcus sp. RS9916] Length = 455 Score = 224 bits (571), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 133/465 (28%), Positives = 229/465 (49%), Gaps = 34/465 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKSTL NRL + + A+V + PG+TRDR Y F +VDT G+ Sbjct: 6 VAIIGRPNVGKSTLVNRLCRSREAIVHDEPGVTRDRTYQDGYWGDREFKVVDTGGLVFDD 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM--- 121 + ++ +Q LA+ EA + L ++D + G+T D +I +LR +N P ++ NK Sbjct: 66 DSEFLPEIREQANLAMAEACVALVIVDGQQGMTAADESIAEWLRSQNCPTLLAVNKCESP 125 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D +A E +SL E ISA H GT +L + Sbjct: 126 DQGLAM--AAEFWSLGLGEPHPISAIHGAGTGDLLDQVLTFL------------------ 165 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 P ++ EG +P+++A+VGRPNVGKS+L+N + G R + G TRD+ Sbjct: 166 ---PPKDEEGEG-------DEPIQMAIVGRPNVGKSSLLNAICGEQRAIVSPIRGTTRDT 215 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 + + + P ++ DTAG+R+ + E + +S +++ + ++++DA + Sbjct: 216 IDTNIERQGMPWKLVDTAGIRRRRSVNYGPEFFGINRSFKAIERSDVCVLVIDALDGVTE 275 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTG 361 QD R+ + + G A V+ +NKWD V + + + + L + + S TG Sbjct: 276 QDQRLAGRIEDEGRACVVVVNKWDAVEKDSHTMPAMEKELRAKLYFLDWAPMLFTSALTG 335 Query: 362 EGLDDLMVSVLEINKLWKTRITTSYLNSWLQKT-QLQNPPPTIFNRYNRLKYITQIQSSP 420 + +D + + + R++TS +N L++ ++PP T R RL Y TQ+ S P Sbjct: 336 QRVDSIFALAALAVEQHRRRVSTSVVNEVLKEALSWRSPPTTRGGRQGRLYYGTQVASRP 395 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 PSF +F P ++Y+RY+ ++R G P+++ ++ + Sbjct: 396 PSFTLFVNDPKLFGDTYRRYVERQIREGLGFEGTPLKLFWRGKQQ 440 >gi|320011615|gb|ADW06465.1| ribosome-associated GTPase EngA [Streptomyces flavogriseus ATCC 33331] Length = 489 Score = 224 bits (571), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 137/460 (29%), Positives = 233/460 (50%), Gaps = 36/460 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD-- 62 +A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ +A G F +VDT G Sbjct: 54 LAVVGRPNVGKSTLVNRIIGRREAVVQDKPGVTRDRVSYEAEWAGRRFKVVDTGGWEQDV 113 Query: 63 -GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 G + S+A Q E AI+ A ++F++D+ G T D A+ LRK P+++ +NK+ Sbjct: 114 LGLDASVAAQ----AEYAISTADAVVFVVDATVGATDTDEAVVRLLRKAKKPVVLCANKV 169 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D + + + ++SL E +S+ H GT ++ + + Sbjct: 170 DGQSGEADATALWSLGLGEPHPVSSLHGRGTGDMLDAVLEALP----------------- 212 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 E+P ++ + + P RIA++GRPNVGKS+L+N++ G +R++ +G TRD Sbjct: 213 -EAPAQSFGT-------ALGGPRRIALIGRPNVGKSSLLNKVAGEDRVVVNELAGTTRDP 264 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 V N + DTAG+R+ + E + ++ +V E ++L+D++ Sbjct: 265 VDELINLGGITWKFIDTAGIRRKVHLQEGADYYASLRTAAAVEKAEVAVILIDSSESISV 324 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTG 361 QD RIV G AVV+A NKWD + ++ L + L QI +S TG Sbjct: 325 QDQRIVTMAVEAGRAVVIAFNKWDTLDEERRYY--LEREIDTELAQISWAPRVNVSAVTG 382 Query: 362 EGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 ++ L+ ++ + W+TR+ T LN++L + +P P + R+ + TQ + PP Sbjct: 383 RHMEKLVPAIETAIEGWETRVPTGRLNAFLGEIVASHPHPVRGGKQPRILFGTQAGTKPP 442 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 F++F + + Y+R++ RLR F G P+ + + Sbjct: 443 RFVLFAS--GFLEHGYRRFVERRLREEFGFEGTPLHISVR 480 >gi|308189713|ref|YP_003922644.1| GTP-binding protein [Mycoplasma fermentans JER] gi|319776899|ref|YP_004136550.1| gtp-binding protein enga [Mycoplasma fermentans M64] gi|238809685|dbj|BAH69475.1| hypothetical protein [Mycoplasma fermentans PG18] gi|307624455|gb|ADN68760.1| GTP-binding protein [Mycoplasma fermentans JER] gi|318037974|gb|ADV34173.1| GTP-binding protein engA [Mycoplasma fermentans M64] Length = 435 Score = 224 bits (571), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 139/460 (30%), Positives = 246/460 (53%), Gaps = 35/460 (7%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 IAI+G PNVGKSTLFNRL+ K+ +++ + PG+TRDRLY NG ++DT GI + Sbjct: 5 VIAIIGKPNVGKSTLFNRLIGKRSSIIYDRPGVTRDRLYETFSWNGKEIKVIDTGGI-EI 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 +N + + Q ++AI EA++I+F++D + IT D I S L+K PI++V+NK+D Sbjct: 64 ENRPFQEHIQIQAKIAIEEANVIIFMVDGASDITNDDLMIYSMLQKSGKPIVVVANKLDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 I+Q N Y YSL I ISA+H G ++ K + +++ K + Sbjct: 124 -ISQFN-YSWYSLGVDHIFPISAQHGNGVGDVLDQCLKHLR----------LDDEKSD-- 169 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 K +++++GRPN GKS+++NRL NR + +G TRDSV Sbjct: 170 ------------------KLFKLSIIGRPNSGKSSMLNRLANENRSIVSDIAGTTRDSVK 211 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 K+ EI DTAG+ + S+I +S++ +K++M S+ ++VL+D+T D Sbjct: 212 SIVKIKDEVFEIIDTAGITRKSKIEDSVDHYALKRAMSSLDESNLSLVLIDSTQELSHFD 271 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 RI+ + +++ +NKWD+++ + + + K + + I +S +T Sbjct: 272 SRIIGYALDNNKPIIIVVNKWDLINKETKTMVEFEKKMRNKFHFVPWVPICFVSVKTNSR 331 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNP-PPTIFNRYNRLKYITQIQSSPPS 422 +D L+ +++++ + + + S L++ +++TQ+ P PP R N + + + Q P+ Sbjct: 332 MDKLIDTIIKVKQNLERDVKPSVLSNLIRETQMIQPAPPYNGGRLN-IYFARKTQDPVPT 390 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 F+ F + SY+R+L ++R +G PI + F++ Sbjct: 391 FVFFVNNKKYVHFSYERFLEKQIRQVLDYTGCPINLVFKN 430 Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 42/123 (34%), Positives = 67/123 (54%), Gaps = 2/123 (1%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 ++ ++I+G PN GKS++ NRL + ++V + G TRD + I +F I+DTAGI Sbjct: 171 LFKLSIIGRPNSGKSSMLNRLANENRSIVSDIAGTTRDSVKSIVKIKDEVFEIIDTAGIT 230 Query: 62 DGKNC--SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 S+ + +++E++L L LIDS ++ +D I + N PIIIV N Sbjct: 231 RKSKIEDSVDHYALKRAMSSLDESNLSLVLIDSTQELSHFDSRIIGYALDNNKPIIIVVN 290 Query: 120 KMD 122 K D Sbjct: 291 KWD 293 >gi|260061763|ref|YP_003194843.1| GTP-binding protein EngA [Robiginitalea biformata HTCC2501] gi|88785895|gb|EAR17064.1| GTP-binding protein EngA [Robiginitalea biformata HTCC2501] Length = 412 Score = 224 bits (571), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 134/436 (30%), Positives = 221/436 (50%), Gaps = 32/436 (7%) Query: 22 LVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNCSIAKQMNDQTELAIN 81 +++++ A+V G+TRDR YG++ NG F+++DT G G + K+++ Q LA++ Sbjct: 1 MIQRREAIVDAVSGVTRDRHYGKSDWNGKEFSLIDTGGYVVGSDDVFEKEIDKQVLLAVD 60 Query: 82 EAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQRNFYEIYSLDFKEI 141 EA ILF++D+ G+T D + LRK + PI +V NK+D + E YSL E Sbjct: 61 EADAILFMVDAVTGVTGMDEEVARMLRKVDKPIFLVVNKVDNAARLEDAVEFYSLGLGEY 120 Query: 142 VEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEESPKENITSEGKSSVKNIS 201 +S+ + GT EL + + ++ P R E P Sbjct: 121 YPVSSINGSGTGELLDALVPVLPERPP-----------REEALP---------------- 153 Query: 202 KPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGM 261 R AVVGRPN GKS+ IN L+G R + +G TRDS+ +N + DTAG+ Sbjct: 154 ---RFAVVGRPNAGKSSFINALIGEERYIVTDIAGTTRDSIDTRYNRFGFEFNLVDTAGI 210 Query: 262 RKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLAL 321 R+ S++ E LE +V +S++++ + ++L+DAT F+ Q I +V+ + Sbjct: 211 RRKSKVKEDLEFYSVMRSVRAIEHSDVCLILVDATRGFDGQVQNIFWLAQRNHKGIVILV 270 Query: 322 NKWDMVSDKLNLLQDLRTKAIKNLPQ-IGDIYINTISGRTGEGLDDLMVSVLEINKLWKT 380 NKWD+V + +++ T+ IK DI I IS + + + + + + + Sbjct: 271 NKWDLVEKETGSVKEY-TRMIKEATSPFTDIPIVFISALNKQRIFKAIETAVTVYENRSR 329 Query: 381 RITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRY 440 RI T LN + + PPP I +Y ++K+ TQ+ + P F FC P + + YKR+ Sbjct: 330 RIPTRKLNDLMLPIIEKYPPPAIKGKYVKIKFCTQLPTPFPQFAFFCNLPQYVKDPYKRF 389 Query: 441 LINRLRINFSLSGIPI 456 L N+LR F +G+P+ Sbjct: 390 LENKLREQFDFTGVPM 405 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 61/125 (48%), Gaps = 12/125 (9%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI---- 60 A+VG PN GKS+ N L+ ++ +V + G TRD + + G FN+VDTAGI Sbjct: 155 FAVVGRPNAGKSSFINALIGEERYIVTDIAGTTRDSIDTRYNRFGFEFNLVDTAGIRRKS 214 Query: 61 ---ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIV 117 D + S+ + + AI + + L L+D+ G I ++ + I+I+ Sbjct: 215 KVKEDLEFYSVMRSVR-----AIEHSDVCLILVDATRGFDGQVQNIFWLAQRNHKGIVIL 269 Query: 118 SNKMD 122 NK D Sbjct: 270 VNKWD 274 >gi|21672838|ref|NP_660905.1| GTP-binding protein EngA [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|8134425|sp|O51881|DER_BUCAP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|2827027|gb|AAC38119.1| ORF453 hypothetical protein [Buchnera aphidicola] gi|21623492|gb|AAM68116.1| probable GPT-binding protein EngA [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 453 Score = 224 bits (571), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 167/478 (34%), Positives = 257/478 (53%), Gaps = 34/478 (7%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAII-NGVIFNIVDTAG 59 M+ I ++G NVGKSTLFN L K + A+V ++PG+TRDR YG + IVDTAG Sbjct: 1 MLPIIVLIGRTNVGKSTLFNILSKTRNALVADYPGLTRDRNYGYCYLKENKKITIVDTAG 60 Query: 60 IADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 I + K+ I KQ ++QT AI E ILFL++++ G+ P ++ I+ +RK I+V N Sbjct: 61 I-NFKSQKIEKQSHEQTLKAIKECDGILFLVNARDGVMPEEYEISRKIRKYEKKTILVIN 119 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNK 179 K+D E YSL FKE ++ISA H+ G + L S KY + N Sbjct: 120 KIDGIKEISKINEFYSLGFKENIKISASHNQGINNLIS--------KYLTPWI-----NS 166 Query: 180 RNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITR 239 + +E E I+ E KN ++IA +G+PNVGKSTLIN LL R++T +++G T Sbjct: 167 KFKEKKLEKISQEHSKKEKN---SVKIACIGKPNVGKSTLINSLLMKKRMITSNKAGTTL 223 Query: 240 DS--VSISWNWKNHPIEIF-DTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDAT 296 D+ V I +N+KN+ IF DTAGM K T +E+ K++Q++ T++++DA Sbjct: 224 DTVLVPIKYNYKNY---IFIDTAGMSKKKSKTNKIEKFCKIKTLQTIEKSHLTLLIIDAK 280 Query: 297 IPFEKQDLRIVDSVFNTGHAVVLALNKWDMVS--DKLNLLQDLRTKAIKNLPQIGDIY-- 352 KQDL + + +G +++ +NK D++S +K N L++L K +K + + Sbjct: 281 DQISKQDLLLSSFIEKSGKPLIIVINKCDLLSLKEKKN-LENLIKKQLK-----CNFFSK 334 Query: 353 INTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKY 412 I+ IS EG +L S+ + +I TS + + K ++ PP I R +LKY Sbjct: 335 IHFISALNNEGTVELFKSIDTSYHTSQKKIKTSQVMKIMHKAVKKHQPPIINGRRIKLKY 394 Query: 413 ITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 S+P +I + YK+YL N ++G PI++ F+ + NPYI K Sbjct: 395 AHLGNSNPIEIMIHGNQVKNLSLCYKKYLKNFFYKTLKMNGTPIKIQFKETMNPYISK 452 >gi|145594473|ref|YP_001158770.1| small GTP-binding protein [Salinispora tropica CNB-440] gi|189037159|sp|A4X692|DER_SALTO RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|145303810|gb|ABP54392.1| small GTP-binding protein [Salinispora tropica CNB-440] Length = 467 Score = 224 bits (570), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 153/458 (33%), Positives = 234/458 (51%), Gaps = 35/458 (7%) Query: 9 GAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA-DGKNCS 67 G PNVGKSTL NRL+ ++ AVV + PG+TRDR+ A NG F +VDT G D K+ + Sbjct: 31 GRPNVGKSTLVNRLIGRRQAVVEDVPGVTRDRVPYDAQWNGRQFAVVDTGGWEPDAKDRA 90 Query: 68 IAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQ 127 A Q E AI A ++LF++D+ G T D A LR+ P+I+V+NK D + Sbjct: 91 AAIAA--QAESAITTADVVLFVVDAVVGATDVDEAAVKMLRRSAKPVILVANKADNSSIE 148 Query: 128 RNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEESPKE 187 ++SL E +SA H G+ EL +I + P P +++E+ R Sbjct: 149 MEASALWSLGLGEPYPVSALHGRGSGELLDLIL----DRLPEAP-KIVEDRPRG------ 197 Query: 188 NITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWN 247 P R+A+VGRPNVGKS+L+NR G R + + +G T D V Sbjct: 198 ---------------PRRVALVGRPNVGKSSLLNRFSGEIRAVVDAVAGTTVDPVDSLVE 242 Query: 248 WKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIV 307 ++ DTAG+RK E ++ ++ E +VLLDA+ +QD RI+ Sbjct: 243 IGGEAWQLVDTAGLRKRVGQASGTEYYASLRTTSAIEAAEVAVVLLDASEVISEQDQRIL 302 Query: 308 DSVFNTGHAVVLALNKWDMV-SDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDD 366 V + G A+V+A NKWD+V +D+ L + ++ +P I +N +S RTG +D Sbjct: 303 SMVTDAGRALVIAFNKWDLVDADRRYYLDREIERELRRIPWA--IRLN-LSARTGRAVDK 359 Query: 367 LMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFLIF 426 L ++ W+TR+ T+ LN+WL P P R ++ + TQ ++PP F++F Sbjct: 360 LAPALRRALASWETRVPTAQLNAWLTALVQATPHPVRGGRAPKILFATQAGAAPPRFVLF 419 Query: 427 CTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 T P + Y+R++ +LR F G PI + ++ K Sbjct: 420 TTGP--LDAGYQRFVERKLREEFGFEGSPIEISVRARK 455 >gi|306827971|ref|ZP_07461238.1| ribosome-associated GTPase EngA [Streptococcus pyogenes ATCC 10782] gi|304429890|gb|EFM32932.1| ribosome-associated GTPase EngA [Streptococcus pyogenes ATCC 10782] Length = 436 Score = 224 bits (570), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 136/467 (29%), Positives = 244/467 (52%), Gaps = 41/467 (8%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AIVG PNVGKSTLFNR+ +++++V + G+TRDR+Y F+++DT GI D Sbjct: 5 TVAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRQFSLIDTGGI-DD 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + +Q+ Q ++A+ EA +I+F++ K G+T D ++ L + N P+I+ NK+D Sbjct: 64 VDAPFMEQIKHQAQIAMEEADVIVFVVSGKEGVTDADEYVSKILYRTNTPVILAVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + Y+ YSL + +S+ H +GT ++ I + N P+E +E N Sbjct: 124 PEMRNDIYDFYSLGLGDPYPVSSVHGIGTGDVLDAIVE-------NLPVEEVEEN----- 171 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 + +++GRPNVGKS+LIN +LG +R++ +G TRD++ Sbjct: 172 -----------------DDIIHFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAID 214 Query: 244 ISW-NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + + + DTAGMRK +I E+ E+ +V ++++++ + +++++A + Sbjct: 215 THFTDADGQEFTMIDTAGMRKSGKIYENTEKYSVMRAIRAIDRSDVVLMVINAEEGIREY 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLL-----QDLRTKAIKNLPQIGDIYINTIS 357 D RI G +++ +NKWD + DK N D+R + + L I+++ ++ Sbjct: 275 DKRIAGFAHEAGKGMIIVVNKWDTI-DKDNHTVAKWEADIRDQ-FQFLTYAPIIFVSALT 332 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 + L DL + I++ RI ++ LN + NP PT + ++ Y TQ+ Sbjct: 333 KQRLNKLPDL---IKRISESQNKRIPSAVLNDVIMDAIAINPTPTDKGKRLKIFYATQVS 389 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 PP+F++F + SY R+L N++R F+ G PI + + K Sbjct: 390 VKPPTFVVFVNEEELMHFSYLRFLENQIRAAFTFEGTPIHLIARKRK 436 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 40/129 (31%), Positives = 68/129 (52%), Gaps = 11/129 (8%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRL---YGQAIINGVIFNIVDTA 58 I +++G PNVGKS+L N ++ + + G TRD + + A +G F ++DTA Sbjct: 174 IIHFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTHFTDA--DGQEFTMIDTA 231 Query: 59 GIADGKNCSIAKQMNDQTEL----AINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPI 114 G+ K+ I + + + AI+ + ++L +I+++ GI YD I F + + Sbjct: 232 GMR--KSGKIYENTEKYSVMRAIRAIDRSDVVLMVINAEEGIREYDKRIAGFAHEAGKGM 289 Query: 115 IIVSNKMDT 123 IIV NK DT Sbjct: 290 IIVVNKWDT 298 >gi|331658656|ref|ZP_08359600.1| ribosome-associated GTPase EngA [Escherichia coli TA206] gi|331054321|gb|EGI26348.1| ribosome-associated GTPase EngA [Escherichia coli TA206] Length = 396 Score = 224 bits (570), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 133/374 (35%), Positives = 212/374 (56%), Gaps = 5/374 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A I G F +DT GI Sbjct: 14 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGI 73 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ LAI EA ++LF++D+++G+ P D AI LR + P +V+NK Sbjct: 74 -DGTEDGVETRMAEQSLLAIEEADVVLFMVDARSGLMPADEAIAKHLRSREKPTFLVANK 132 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGT-SELHSVIFKIFKQKYPNHPLEMIENNK 179 D + + Y+L EI I+A H G S L V+ + P ++ + Sbjct: 133 TDGLDPDQAVVDFYALGLGEIYPIAASHGRGVLSLLEHVLLPWMEDLAPQEEVDE-DAEY 191 Query: 180 RNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITR 239 + +EN E + S P+++A+VGRPNVGKSTL NR+LG R++ G TR Sbjct: 192 WAQFEAEENGEEEEEDDFDPQSLPIKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTR 251 Query: 240 DSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPF 299 DS+ I + DTAG+RK +IT+++E+ +V K++Q++ ++++DA Sbjct: 252 DSIYIPMERDGREYVLIDTAGVRKRGKITDAVEKFSVIKTLQAIEDANVVMLVIDAREGI 311 Query: 300 EKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGR 359 QDL ++ + N+G ++V+ +NKWD +S ++ + ++ L I ++ IS Sbjct: 312 SDQDLSLLGFILNSGRSLVIVVNKWDGLSQEVK--EQVKETLDFRLGFIDFARVHFISAL 369 Query: 360 TGEGLDDLMVSVLE 373 G G+ +L SV E Sbjct: 370 HGSGVGNLFESVRE 383 >gi|42523421|ref|NP_968801.1| GTP-binding protein [Bdellovibrio bacteriovorus HD100] gi|39575627|emb|CAE79794.1| probable GTP-binding protein [Bdellovibrio bacteriovorus HD100] Length = 449 Score = 224 bits (570), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 135/467 (28%), Positives = 241/467 (51%), Gaps = 41/467 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKSTLFN + + + AVV N G+TRD + I G F+++DT GI + Sbjct: 13 VAIIGRPNVGKSTLFNIITETRKAVVKNQAGVTRDIMIEPVDIWGKQFDLIDTGGITEAG 72 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 + +K + +Q ++ LI+ ++D + G+ P D I ++ P ++V NK+D+ Sbjct: 73 DI-FSKLIKEQVTEFLHSVDLIVAVMDGRVGLVPEDRDIIRVAKQTGKPFLLVINKVDSD 131 Query: 124 ---RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +A+ +FYE + +D +V S E G +E+ + K + P +P Sbjct: 132 QDQDMAKADFYE-FGVD---VVAASFEQRRGLAEILEWVVK----QIPENP--------- 174 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 + + + IA+VG+PNVGKS++ N +LGYNR++ +G T D Sbjct: 175 -----------------GTVKEGMNIAIVGKPNVGKSSICNAILGYNRMIVSDIAGTTID 217 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 SV + + + + DTAG+R+ ++ E LE + KS +++R + ++++D T+ Sbjct: 218 SVDSPFVYNDKKYTLVDTAGLRRSAKREEDLEIISAFKSQEAIRRADIVLLMVDGTVGPT 277 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKL-NLLQDLRTKAIKNLPQIGDIYINTISGR 359 QD RI+ ++ V++ NK D+ ++ + R + + D++I S + Sbjct: 278 DQDARIMQAILEDHKGVIVVANKSDLGGKEVPEYRKTFREQVERVFHFFTDVHIVFTSAK 337 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 TG GL+DL + ++ R+ T+ LN + +T + P P + Y+TQ Sbjct: 338 TGYGLEDLFEMIEKVAHQMTFRVPTAELNDFFFETIRKAPAPVWGTTNVKFYYLTQTYQQ 397 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM-CFQSSKN 465 PP+F+ F P+ + SY+R+LI ++ N+ L G+PIR+ C +S + Sbjct: 398 PPAFIAFANHPDGVTNSYRRFLIKHIKTNWDLHGMPIRIFCMKSRRG 444 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/136 (27%), Positives = 70/136 (51%), Gaps = 4/136 (2%) Query: 195 SSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIE 254 S++K P ++A++GRPNVGKSTL N + + + +Q+G+TRD + + + Sbjct: 3 STLKTDFSP-KVAIIGRPNVGKSTLFNIITETRKAVVKNQAGVTRDIMIEPVDIWGKQFD 61 Query: 255 IFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTG 314 + DT G+ + I L ++ V + + SV + + ++D + +D I+ TG Sbjct: 62 LIDTGGITEAGDIFSKLIKEQVTEFLHSV---DLIVAVMDGRVGLVPEDRDIIRVAKQTG 118 Query: 315 HAVVLALNKWDMVSDK 330 +L +NK D D+ Sbjct: 119 KPFLLVINKVDSDQDQ 134 >gi|108804275|ref|YP_644212.1| small GTP-binding protein domain-containing protein [Rubrobacter xylanophilus DSM 9941] gi|108765518|gb|ABG04400.1| Small GTP-binding protein domain [Rubrobacter xylanophilus DSM 9941] Length = 437 Score = 224 bits (570), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 136/464 (29%), Positives = 229/464 (49%), Gaps = 40/464 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VGAPNVGKS+L NR++ ++ AVV PG TRDR Y +A G F +VDT G+ Sbjct: 10 VAVVGAPNVGKSSLVNRILGRRRAVVAEEPGTTRDRGYARAEWAGREFLLVDTGGMEPSA 69 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + Q +A+ EA +I+ L D++ G T D AI L + +++ NK+D Sbjct: 70 RMGLEALVTLQARIAVEEADVIVHLTDARTGPTEADAAIARELLRSRAEVVLAVNKLDDP 129 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + Y YSL E +SA H LG +L Sbjct: 130 ADESERYRFYSLGEGEPHPVSALHGLGVGDLLD--------------------------- 162 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD---- 240 E + +++ ++ IA++GRPNVGKSTL+NRLLG R + +G T D Sbjct: 163 --EVVARLPEAAPPEAAELPGIAIIGRPNVGKSTLLNRLLGEQRAVVSEAAGTTTDVVES 220 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 V + + + DTAG+ K + + + + ++ +++R ++++DA Sbjct: 221 EVEVQLDGGRERFALLDTAGVGKRTHRAQGVPYYSALRTAEAIRRSSVALLVVDAAEGLV 280 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 DL++ V G ++ + LNK D+V + L++++ +A LP + + +S T Sbjct: 281 AGDLQLARQVEEAGRSLGVLLNKRDLVPPER--LREVQEQAAARLPDLKPPVLG-VSALT 337 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G G+ +++ IN+ + R+ L ++ ++ PP R +L+Y TQ ++P Sbjct: 338 GAGVGEVLPFAARINRAFNLRVRPHELAEYVNHLAARSAPP----RGVKLRYATQTGTAP 393 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 P F +F T P +PESY RY+ N LR + L G+ +R+ +SS+ Sbjct: 394 PRFTLFATRPGDLPESYLRYIENALRERYGLQGVSLRLKVKSSR 437 >gi|320547399|ref|ZP_08041687.1| ribosome-associated GTPase EngA [Streptococcus equinus ATCC 9812] gi|320447944|gb|EFW88699.1| ribosome-associated GTPase EngA [Streptococcus equinus ATCC 9812] Length = 436 Score = 224 bits (570), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 139/463 (30%), Positives = 246/463 (53%), Gaps = 33/463 (7%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AIVG PNVGKSTLFNR+ +++++V + G+TRDR+Y F+++DT GI D Sbjct: 5 TVAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTTGEWLNRKFSLIDTGGI-DD 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + +Q+ Q ++A+ EA +I+F++ K G+T D ++ L + N P+I+V NK+D Sbjct: 64 VDAPFMEQIKHQADIAMTEADVIVFVVSGKEGVTDADEYVSKILYRTNKPVILVVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + Y+ YSL + +S+ H +GT ++ I + N P+E EE Sbjct: 124 PEMRSDIYDFYSLGLGDPYPVSSVHGIGTGDVLDAIVE-------NLPVE--------EE 168 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 +I ++ +++GRPNVGKS+LIN +LG R++ +G TRD++ Sbjct: 169 DENPDI--------------IKFSLIGRPNVGKSSLINAILGEERVIASPIAGTTRDAID 214 Query: 244 ISW-NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 ++ + + + DTAGMRK ++ E+ E+ +V +SM+++ + +++++A + Sbjct: 215 TNFTDSEGQEYTMIDTAGMRKSGKVYENTEKYSVMRSMRAIDRSDIVLMVINAEEGIREY 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQ-IGDIYINTISGRTG 361 D RI G +++ +NKWD + +K N + I++ Q + I +S T Sbjct: 275 DKRIAGFAHEAGKGIIIVVNKWDTI-EKNNYTVAKWEEDIRDQFQFLSYAPIIFVSAATK 333 Query: 362 EGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 + L+ L + +I++ RI ++ LN + NP PT + ++ Y TQ+ PP Sbjct: 334 QRLNKLPEMIKKISESQNKRIPSAVLNDVIMDAIAINPTPTDKGKRLKIFYGTQVAVKPP 393 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 +F+IF + SY R+L N++R F G PI + + K Sbjct: 394 TFVIFVNEEELMHFSYMRFLENQIRAAFGFEGTPINLIARKRK 436 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 41/137 (29%), Positives = 71/137 (51%), Gaps = 14/137 (10%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIIN-GVIFNIVDTAGI 60 I +++G PNVGKS+L N ++ ++ + G TRD + + G + ++DTAG+ Sbjct: 174 IIKFSLIGRPNVGKSSLINAILGEERVIASPIAGTTRDAIDTNFTDSEGQEYTMIDTAGM 233 Query: 61 -------ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIP 113 + + S+ + M AI+ + ++L +I+++ GI YD I F + Sbjct: 234 RKSGKVYENTEKYSVMRSMR-----AIDRSDIVLMVINAEEGIREYDKRIAGFAHEAGKG 288 Query: 114 IIIVSNKMDTRIAQRNF 130 IIIV NK DT I + N+ Sbjct: 289 IIIVVNKWDT-IEKNNY 304 >gi|306832031|ref|ZP_07465186.1| ribosome-associated GTPase EngA [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304425957|gb|EFM29074.1| ribosome-associated GTPase EngA [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 436 Score = 224 bits (570), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 135/462 (29%), Positives = 239/462 (51%), Gaps = 31/462 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AIVG PNVGKSTLFNR+ +++++V + G+TRDR+Y F+++DT GI D Sbjct: 5 TVAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTTGEWLNRKFSLIDTGGI-DD 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + +Q+ Q ++A+ EA +I+F++ K G+T D ++ L + N P+I+V NK+D Sbjct: 64 VDAPFMEQIKHQADIAMTEADVIVFVVSGKEGVTDADEYVSKILYRTNKPVILVVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + Y+ YSL + +S+ H +GT ++ I + N P+E EE Sbjct: 124 PEMRSDIYDFYSLGLGDPYPVSSVHGIGTGDVLDAIVE-------NLPVE--------EE 168 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 +I ++ +++GRPNVGKS+LIN +LG R++ +G TRD++ Sbjct: 169 DENPDI--------------IKFSLIGRPNVGKSSLINAILGEERVIASPIAGTTRDAID 214 Query: 244 ISW-NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 ++ + + + DTAGMRK ++ E+ E+ +V +SM+++ + +++++A + Sbjct: 215 TNFTDSEGQEYTMIDTAGMRKSGKVYENTEKYSVMRSMRAIDRSDIVLMVINAEEGIREY 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D RI G +++ +NKWD + + + + I +S T + Sbjct: 275 DKRIAGFAHEAGKGIIIVVNKWDTIEKDNHTVAKWEEDIRDQFQFLSYAPIIFVSAATKQ 334 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 L+ L + +I+ RI ++ LN + NP PT + ++ Y TQ+ PP+ Sbjct: 335 RLNKLPDMIKKISASQNKRIPSAVLNDVIMDAIAINPTPTDKGKRLKIFYGTQVSVKPPT 394 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 F+IF + SY R+L N++R F G PI + + K Sbjct: 395 FVIFVNEEELMHFSYMRFLENQIRAAFGFEGTPINLIARKRK 436 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 39/130 (30%), Positives = 67/130 (51%), Gaps = 13/130 (10%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIIN-GVIFNIVDTAGI 60 I +++G PNVGKS+L N ++ ++ + G TRD + + G + ++DTAG+ Sbjct: 174 IIKFSLIGRPNVGKSSLINAILGEERVIASPIAGTTRDAIDTNFTDSEGQEYTMIDTAGM 233 Query: 61 -------ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIP 113 + + S+ + M AI+ + ++L +I+++ GI YD I F + Sbjct: 234 RKSGKVYENTEKYSVMRSMR-----AIDRSDIVLMVINAEEGIREYDKRIAGFAHEAGKG 288 Query: 114 IIIVSNKMDT 123 IIIV NK DT Sbjct: 289 IIIVVNKWDT 298 >gi|213418595|ref|ZP_03351661.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 320 Score = 224 bits (570), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 120/329 (36%), Positives = 189/329 (57%), Gaps = 17/329 (5%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A + G F +DT GI Sbjct: 1 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ LAI EA ++LF++D++AG+ P D AI LR + P +V+NK Sbjct: 61 -DGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGT-SELHSVIFKIFKQKYPNHPLE------ 173 D + + YSL EI I+A H G S L V+ P ++ Sbjct: 120 TDGLDPDQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHVLLPWMDDVAPQEEVDEDAEYW 179 Query: 174 -MIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTG 232 E + EE+P+++ + S P+++A+VGRPNVGKSTL NR+LG R++ Sbjct: 180 AQFEAEQNGEEAPEDDFDPQ--------SLPIKLAIVGRPNVGKSTLTNRILGEERVVVY 231 Query: 233 SQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVL 292 G TRDS+ I + DTAG+RK +IT+++E+ +V K++Q++ +++ Sbjct: 232 DMPGTTRDSIYIPMERDEREYVLIDTAGVRKRGKITDAVEKFSVIKTLQAIEDANVVLLV 291 Query: 293 LDATIPFEKQDLRIVDSVFNTGHAVVLAL 321 +DA QDL ++ + N+G ++V+ + Sbjct: 292 IDAREGISDQDLSLLGFILNSGRSLVIVV 320 >gi|219109543|ref|XP_002176526.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217411061|gb|EEC50989.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 551 Score = 223 bits (569), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 146/477 (30%), Positives = 237/477 (49%), Gaps = 43/477 (9%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKM--AVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA- 61 IAIVG PNVGKS L NR+ + A+V + GITRDR Y A G F IVDT G+ Sbjct: 72 IAIVGRPNVGKSALVNRIAGSQSGGAIVADESGITRDRTYRPAEFLGERFMIVDTGGLVF 131 Query: 62 -DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKK-NIPIIIVSN 119 D ++ AK++ +Q +AI E+ ++ ++D + G+T D I FLRK+ +IP+ + N Sbjct: 132 DDDESTLFAKEIREQAMVAIEESAAVIMVVDGQTGLTGMDLMIAEFLRKEVDIPVHVAVN 191 Query: 120 KMDT-RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 K ++ + + + + L E +SA H +GT+E+ IF +K + + Sbjct: 192 KCESEKTGAMSAADFWGLGLGEPFPVSALHGVGTAEIMETIFDSIAEK------KTFDAE 245 Query: 179 KRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 R EE + IA++GRPNVGKS+L+N + G R + +G T Sbjct: 246 DRPEE--------------------INIAIIGRPNVGKSSLLNSIFGDTRAIVSEMAGTT 285 Query: 239 RDSVSISWNWKNHP--------IEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTI 290 RDS+ P DTAG+R+ ++ E V ++++++R + + Sbjct: 286 RDSIDAVMERPPPPGSDDLSTIYRFVDTAGIRRKGKVDFGPEFFMVNRALRAIRRADVVL 345 Query: 291 VLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIK-NLPQIG 349 ++LDAT +QD + + + G A V+ NKWD V DK + D + + LP I Sbjct: 346 LILDATSGVAEQDRVLAQKIADDGRACVIVCNKWDAVVDKDSTTYDKSVQYFREELPMIR 405 Query: 350 DIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYN- 408 I IS TG+ + + ++ + + RI+T+ LN L+ L PPPT N Sbjct: 406 WAPILFISAATGQRVGKIYSAIDGAIEAHRKRISTAILNEVLRDAILWQPPPTRRNGSQA 465 Query: 409 RLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINF-SLSGIPIRMCFQSSK 464 ++ Y Q+ + PP+ ++FC P + ++Y+RYL + R + PIR F+ + Sbjct: 466 KIYYCNQVSTRPPTVVVFCNDPKLVNDNYRRYLDRKFRESLDGFEATPIRWIFRGRR 522 >gi|46581596|ref|YP_012404.1| GTP-binding protein EngA [Desulfovibrio vulgaris str. Hildenborough] gi|81698970|sp|Q725L9|DER_DESVH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|46451019|gb|AAS97664.1| GTP-binding protein EngA [Desulfovibrio vulgaris str. Hildenborough] gi|311235239|gb|ADP88093.1| ribosome-associated GTPase EngA [Desulfovibrio vulgaris RCH1] Length = 491 Score = 223 bits (568), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 144/490 (29%), Positives = 249/490 (50%), Gaps = 33/490 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGV---IFNIVDT 57 M IA+VG PNVGKSTLFNRL++ A+ + PG+TRDR+ G I+ G F I+DT Sbjct: 1 MFAKIALVGRPNVGKSTLFNRLIRSNRAITHDMPGVTRDRMEG--IVRGRNKRPFGIIDT 58 Query: 58 AGIADGKNCSIAK----------QMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFL 107 GI + ++A+ ++ Q E AI E + ++D + G+ P+D + S+L Sbjct: 59 GGITLDGHAAVAEGPAGIRGFEAEILRQAEEAIAECVAVCLVVDGREGLLPFDEHLASYL 118 Query: 108 RKKNIPIIIVSNKMDTRIAQRNFY--EIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQ 165 R+ P+++V NK+D I + + E + L F ++ +SAEH L S + + + Sbjct: 119 RRTGKPVLVVVNKVDG-IEKEDVLTAEFHILGFP-VLAVSAEHGHNLRWLESEMRDLLPE 176 Query: 166 KYPNHPLEMIENNKRNEESPKENITSEGKSS------------VKNISKPLRIAVVGRPN 213 + + + + + + T +G S+ PLR+ ++GRPN Sbjct: 177 EDEDGIDDDAADATAVAIADADAETEDGASASETEEDITEETVEDEPEAPLRLCMLGRPN 236 Query: 214 VGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQ 273 GKS+L+N L G NR++ +G TRDSV +++ DTAG+R+ SRIT+++E+ Sbjct: 237 AGKSSLVNALTGTNRMIVSDVAGTTRDSVDVAFEKDGLSYTFVDTAGVRRRSRITDTVER 296 Query: 274 KTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNL 333 +V S++S T+++LDA QD R+++ + ++ +NK D+V K Sbjct: 297 YSVNSSLKSTTKAHVTLLVLDAVEGITSQDKRLIELLDERKTPFMVLVNKMDLVPAKARE 356 Query: 334 LQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQK 393 + + N Q + + +S +TG L ++ I + RI T LN +++ Sbjct: 357 DGKRNFRDLLNFCQ--HVPLLFVSAKTGYELRSIVPLAARIRRECSVRIPTGQLNRAMEE 414 Query: 394 TQLQNPPPTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSG 453 ++ PP + + Y+TQ +S PP+F++F ++I Y +Y+ LR F + Sbjct: 415 VITRHQPPVVRRVRPKFYYMTQAESQPPTFVLFVNDADRIQAPYAKYIEKSLRRLFGIEH 474 Query: 454 IPIRMCFQSS 463 P+R+ F+SS Sbjct: 475 APMRVHFRSS 484 >gi|317968893|ref|ZP_07970283.1| GTP-binding protein Der [Synechococcus sp. CB0205] Length = 454 Score = 223 bits (568), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 132/467 (28%), Positives = 237/467 (50%), Gaps = 39/467 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKSTL NRL + + A+V + PG+TRDR Y Q F +VDT G+ Sbjct: 6 VAIIGRPNVGKSTLVNRLCRSREAIVHDEPGVTRDRTYQQGYWRDRHFKVVDTGGLVFDD 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + ++ +Q LA++EA + + + D + G+T D +I +LR N+P+++ NK ++ Sbjct: 66 DSEFLPEIREQANLALSEASVAVVIADGQQGLTAADESIAEWLRGHNVPVLLAVNKCESP 125 Query: 125 IAQRNF-YEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 A E +SL E ISA H GT +L M+++ EE Sbjct: 126 EAGLAMAAEFWSLGLGEPFPISAIHGAGTGDLLD---------------RMVDHLPAAEE 170 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 E +P+++A+VGRPNVGKS+L+N + G R + G TRD++ Sbjct: 171 LEGE--------------EPIQMAIVGRPNVGKSSLLNAVCGEKRAIVSPIRGTTRDTID 216 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 S + P ++ DTAG+R+ + E + +S +++ + ++++DA +QD Sbjct: 217 TSIEREGKPWKLLDTAGIRRRRSVNYGPEYFGINRSFKAIERSDVCVLVIDALDGVTEQD 276 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLL----QDLRTKAIKNLPQIGDIYINTISGR 359 R+ + G A V+ +NKWD + + + ++LR K + L ++ + ++G+ Sbjct: 277 QRLAGRIEEEGRACVVVVNKWDAIEKDSHTMPAMEKELRAK-LYFLDWAPMLFTSALTGQ 335 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKT-QLQNPPPTIFNRYNRLKYITQIQS 418 E + + +E + + R++TS +N L++ ++PP + R R+ Y TQ+ Sbjct: 336 RVESIFAIAAVAVEQH---RRRVSTSVVNEVLREAVSWRSPPTSRGGRQGRIYYGTQVAV 392 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 PPSF +F P ++Y+RY+ ++R G P+++ ++ + Sbjct: 393 RPPSFTLFVNDPKLFGDTYRRYVERQIREGLGFEGSPLKLFWRGKQQ 439 >gi|33519978|ref|NP_878810.1| GTP-binding protein EngA [Candidatus Blochmannia floridanus] gi|33504324|emb|CAD83216.1| predicted GTPase [Candidatus Blochmannia floridanus] Length = 485 Score = 223 bits (568), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 149/477 (31%), Positives = 248/477 (51%), Gaps = 17/477 (3%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 I +VG NVGKSTLFNRL + A+V ++PG+TRDR YG F ++DT G Sbjct: 11 VIVLVGQENVGKSTLFNRLTCTRDALVSSYPGLTRDRKYGYIKYKNFKFILIDTGGFNIF 70 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + I +NDQT +AI E+ +ILF++D K + D I ++LRK I +V NK+D Sbjct: 71 SDTLIQDCINDQTNIAIQESCIILFVVDGKKQGSSEDWNIITYLRKLKKGIFVVINKIDN 130 Query: 124 RIAQRNF--YEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 I+ N+ ++ Y K +V ISA H G S L KI+ Q N + K+ Sbjct: 131 AISYNNYKIWDYYLYGIKNVVIISAVHGYGISTLLD---KIYLQSLKNS----FDGVKKC 183 Query: 182 EESPKENITSEGKSSVKNI-----SKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSG 236 + K+S KN+ ++P+ + ++GRPN GKST +N LL R++ G Sbjct: 184 FFNTYIGFDDYQKNSEKNLLLNQNNEPIIVVIIGRPNSGKSTFVNYLLKEERMIVSDIPG 243 Query: 237 ITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDAT 296 TRDSV I + N DTAG+RK ++ EQ + K++Q ++ T+ +LD Sbjct: 244 TTRDSVYIPITYNNDKYMFVDTAGIRKKKHVSSVAEQISKLKTLQILKYAHVTLFILDIQ 303 Query: 297 IPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAI-KNLPQIGDIYINT 355 QDL +++ + + ++++A+NK+D+ S K + L + + K + + + I+ Sbjct: 304 EGIVNQDLSLLNFITKSSKSLIIAVNKYDIFSSKTGFDKTLMKEELNKKISFLNFVKIHY 363 Query: 356 ISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNR--YNRLKYI 413 IS G G+ +L S+ +I+ K +I T+ L + + ++ PPP I +LK++ Sbjct: 364 ISALYGSGIKNLFQSIKKIHDFSKQKINTAQLTRVMHEAIIKYPPPFIRGTKFAPKLKFV 423 Query: 414 TQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +P F+I T + + +Y++YL N ++ G+ +M F+++ NP+ K Sbjct: 424 HVGSYNPVVFIIHGTRVSSLSNAYRKYLRNYFYRALNIEGVIFQMHFKNTVNPFSDK 480 >gi|308176963|ref|YP_003916369.1| GTP-binding protein EngA [Arthrobacter arilaitensis Re117] gi|307744426|emb|CBT75398.1| GTP-binding protein EngA [Arthrobacter arilaitensis Re117] Length = 510 Score = 223 bits (568), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 146/459 (31%), Positives = 225/459 (49%), Gaps = 36/459 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI---A 61 +A++G PNVGKSTL NR++ ++ AVV + PG+TRDR+ A G F IVDT G A Sbjct: 75 LAVIGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYSAEWMGRPFTIVDTGGWEHDA 134 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 G + S+A DQ E+A + A ILF++DS G T D A+ LRKK P+ +V+NK+ Sbjct: 135 KGIHASVA----DQAEIAADVADAILFVVDSHVGATATDEAVVKMLRKKGKPVFLVANKV 190 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D + ++ L F + +SA H GT++L + +K P H Sbjct: 191 DDFNQEAEAAVLWGLGFGQPWPVSALHGRGTADLLDAVM----EKLPAH----------- 235 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 + I S G P R+A++GRPNVGKS+L+N++ G R++ +G TRD Sbjct: 236 -SAFGGMIPSGG---------PRRVALIGRPNVGKSSLLNKVAGSERVVVDEYAGTTRDP 285 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 V DTAG+R+ + + ++ ++ E ++LL A + Sbjct: 286 VDELVELGGEIWRFVDTAGIRRRQHMAVGSDYYASLRTQTALEKAEVAVILLAANEIISE 345 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTG 361 QD+RI+ G A+V+ NKWD V + D + ++L I IS +TG Sbjct: 346 QDVRIIQLAIEAGRAMVIVYNKWDEVDEDRRYYLDQEIE--RDLAHIEWAPRVNISAKTG 403 Query: 362 EGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 D L+ ++ W RI T LN++L + +P P + R+ + TQ + PP Sbjct: 404 WHKDKLVPALNTALDSWDKRIPTGKLNAFLGELVAAHPHPVRGGKQPRILFGTQASARPP 463 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCF 460 F++F T + Y+R++ RLR F G PI + Sbjct: 464 RFVLFTT--GFLDPGYRRFITRRLRETFGFDGSPIEVSM 500 Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 49/171 (28%), Positives = 77/171 (45%), Gaps = 12/171 (7%) Query: 203 PLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMR 262 P +AV+GRPNVGKSTL+NR+LG + G+TRD VS S W P I DT G Sbjct: 72 PPVLAVIGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYSAEWMGRPFTIVDTGGWE 131 Query: 263 KPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALN 322 ++ + ++ + + + ++D+ + D +V + G V L N Sbjct: 132 HDAK---GIHASVADQAEIAADVADAILFVVDSHVGATATDEAVVKMLRKKGKPVFLVAN 188 Query: 323 KWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 K D + Q+ + L G + +S G G DL+ +V+E Sbjct: 189 KVD------DFNQEAEAAVLWGL-GFGQPW--PVSALHGRGTADLLDAVME 230 >gi|296126458|ref|YP_003633710.1| ribosome-associated GTPase EngA [Brachyspira murdochii DSM 12563] gi|296018274|gb|ADG71511.1| ribosome-associated GTPase EngA [Brachyspira murdochii DSM 12563] Length = 484 Score = 223 bits (567), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 141/482 (29%), Positives = 238/482 (49%), Gaps = 22/482 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAI+G PNVGKSTLFNR ++ ++V G+TRD A I+ + FN+ DT G+ D Sbjct: 4 IAILGRPNVGKSTLFNRFAGRRKSIVDPTAGVTRDISMSLAYIDDIAFNVFDTGGLLDIS 63 Query: 65 NCSIAKQMNDQT-ELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + ++ +++ ++ + A +A ++LFL+D+ P D + +RK PII+V NK+D Sbjct: 64 DDTLNEKVREKALKTAAEDADILLFLVDAHQS-HPDDRHFINIIRKSGKPIILVINKVDA 122 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 E YSL ++V ISAEH+ G +L I ++ ++ + E E + ++ Sbjct: 123 DSHNNLINEFYSLGINDVVPISAEHNNGIDDLREKILEVLERIGVDLEAEREEQINQIKD 182 Query: 184 SPKENITSEGKSSVKNI------------------SKPLRIAVVGRPNVGKSTLINRLLG 225 S K + SE N +K + IA+VG+PN GKSTL+N L+G Sbjct: 183 SNKSSYNSEKMDIEYNELLEEYDEYDEESTIEEDENKIINIAIVGKPNAGKSTLLNTLIG 242 Query: 226 YNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRT 285 +R + +G TRD++ ++N+K I + DTAG+RK + +E +V ++++++ + Sbjct: 243 KDRSIVSDIAGTTRDAIDETFNFKGDDICLVDTAGIRKKKNVNTDVEYYSVNRAIKAIES 302 Query: 286 CETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNL 345 + I++LD QD I + + +V+A NKWD + +K D Sbjct: 303 SDVCILMLDVFEGLTDQDKTIANLIIERKKGIVIAANKWD-IREKGTTWNDYEAYMKSAF 361 Query: 346 PQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFN 405 P + + + + L+ + + K R T L + + + N Sbjct: 362 PILNYAFYARVCAARKNDAEKLLSLAVRVAKTRMQRFETHALTETMVRATREYTISAGGN 421 Query: 406 RYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 + ++ Y+TQ +PP+F +FC P+K+ YKRYL NR R F G PI + F+ Sbjct: 422 PF-KIFYVTQTGVNPPAFAVFCNHPHKLNSHYKRYLENRFREMFDFRGTPIILNFRKRGK 480 Query: 466 PY 467 Y Sbjct: 481 KY 482 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 55/184 (29%), Positives = 86/184 (46%), Gaps = 13/184 (7%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 I IAIVG PN GKSTL N L+ K ++V + G TRD + G +VDTAGI Sbjct: 220 IINIAIVGKPNAGKSTLLNTLIGKDRSIVSDIAGTTRDAIDETFNFKGDDICLVDTAGIR 279 Query: 62 DGKNCSIAKQMN--DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 KN + + ++ AI + + + ++D G+T D I + + ++ I+I +N Sbjct: 280 KKKNVNTDVEYYSVNRAIKAIESSDVCILMLDVFEGLTDQDKTIANLIIERKKGIVIAAN 339 Query: 120 KMDTRIAQR--NFYEIYS------LDFKEIVEISAEHDLGTSELHSVIFKIFK---QKYP 168 K D R N YE Y L++ + A +L S+ ++ K Q++ Sbjct: 340 KWDIREKGTTWNDYEAYMKSAFPILNYAFYARVCAARKNDAEKLLSLAVRVAKTRMQRFE 399 Query: 169 NHPL 172 H L Sbjct: 400 THAL 403 >gi|309810373|ref|ZP_07704208.1| ribosome biogenesis GTPase Der [Dermacoccus sp. Ellin185] gi|308435686|gb|EFP59483.1| ribosome biogenesis GTPase Der [Dermacoccus sp. Ellin185] Length = 506 Score = 223 bits (567), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 137/463 (29%), Positives = 225/463 (48%), Gaps = 42/463 (9%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ A G F +VDT G + Sbjct: 72 VAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVAYDAEWVGRRFTLVDTGGW-EVD 130 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I ++ +Q E+AI A ++F++D+ G T D A+ LR+ P+++++NK+D Sbjct: 131 ASGIHLRVAEQAEVAIELADAVMFVVDATVGATDTDEAVVKLLRRSKKPVVLIANKVDDN 190 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQK------YPNHPLEMIENN 178 ++ + ++SL E +S+ H GT + + + K YP Sbjct: 191 RSEADAAMLWSLGLGEPYPVSSLHGRGTGDALDAVIDLLPDKTAVAGAYPR--------- 241 Query: 179 KRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 P R+A++GRPNVGKS+L+N+L G R++ + +G T Sbjct: 242 ----------------------GGPRRVALLGRPNVGKSSLLNKLAGEERVVVDNVAGTT 279 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RD V DTAG+R+ T + ++ ++ E +VL+DA Sbjct: 280 RDPVDEYIELGGKTWRFVDTAGIRRRVHQTRGADFYASLRTQTALEKAEVAVVLIDAEQS 339 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 +QD+R+V V + G A+V+A NKWD + ++ L + + L Q+ +S Sbjct: 340 IAEQDVRVVQQVIDAGRALVIAYNKWDTLDEERRYY--LEKEIERELVQVPWAPRVNLSA 397 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 +TG D L+ ++ W RI T LN++L + +P P + R+ + TQ + Sbjct: 398 KTGRHTDRLVPAIEVALDSWDQRIPTGRLNAFLGEVVAAHPHPVRGGKQPRILFATQAST 457 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 PP F+IF + I Y R++ RLR F G PI + + Sbjct: 458 RPPRFVIFAS--GFIEAGYCRFIERRLREEFGFDGTPIEISVR 498 >gi|302790107|ref|XP_002976821.1| hypothetical protein SELMODRAFT_105942 [Selaginella moellendorffii] gi|300155299|gb|EFJ21931.1| hypothetical protein SELMODRAFT_105942 [Selaginella moellendorffii] Length = 471 Score = 223 bits (567), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 150/487 (30%), Positives = 251/487 (51%), Gaps = 47/487 (9%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPG--ITRDRLYGQAIINGVIFNIVDTAGIA 61 ++ I+G PNVGKS+L+NRLV +K A+V + P +TRD G A ++ + F + D+AG+ Sbjct: 3 SVIILGRPNVGKSSLYNRLVHRKEAIVYDTPDSHVTRDIREGSAKLSDLRFKVFDSAGLE 62 Query: 62 DGKNC-SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNI--PIIIVS 118 + ++ + T + H LFLID +AG++P D + RK N+ P+++V Sbjct: 63 TSEEGETVLARTTGLTATFLRTCHAALFLIDGRAGVSPLDKEAVMWFRKLNLNLPVVLVV 122 Query: 119 NKMDTRIAQR----NFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEM 174 NK + N E YSL + V +SAE G ++L + I Sbjct: 123 NKAEKITGDHQIMANIAESYSLGLGDPVPVSAETGEGLADLFQRLQPIL----------- 171 Query: 175 IENNKRNEESPKENITSEGKSSVKNIS--KPLRIAVVGRPNVGKSTLINRLLGYNRLLTG 232 ++ KE + E + K++ KPLR+A+ GR NVGKST+IN LL R+LTG Sbjct: 172 --------DAAKEKLVDEEEEEEKSLGGQKPLRLAIAGRTNVGKSTVINSLLRKERVLTG 223 Query: 233 SQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVL 292 + G+TRD+++I + + P+ + DTAG + S++ E + + +S+ T ++ Sbjct: 224 PEPGLTRDAITIDFEFNKKPVRLVDTAGWIQRSQLEEGPMALSAMLARRSLMTAHVVAIV 283 Query: 293 LDAT-IPFEKQDLR-----IVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIK--- 343 LDA I K LR + V + G A+++ +NK D++ + N DLR K ++ Sbjct: 284 LDAQEIAQSKMTLRNSEAALARWVTDEGRALIIVVNKMDVLKGQKN--ADLRKKLMEAVP 341 Query: 344 -----NLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQN 398 LPQ+ + I +S G G +M E W TR++T LN WL K ++ Sbjct: 342 KEIQLTLPQVLGVPIIFVSALKGRGRSTIMKLAFEAYDKWCTRVSTPRLNRWLHKVLARH 401 Query: 399 PPPTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 P R + +YITQ+++ PP+F++F + + R++ N +R +F++ GIP+R+ Sbjct: 402 PKRKDEKRA-KPRYITQVKARPPTFVLFVAGFYSLEDHELRFISNAIREDFNMGGIPVRV 460 Query: 459 CFQSSKN 465 ++ K Sbjct: 461 IQRTKKE 467 >gi|288906012|ref|YP_003431234.1| GTP-binding protein [Streptococcus gallolyticus UCN34] gi|288732738|emb|CBI14312.1| putative GTP-binding protein [Streptococcus gallolyticus UCN34] Length = 436 Score = 223 bits (567), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 135/462 (29%), Positives = 239/462 (51%), Gaps = 31/462 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AIVG PNVGKSTLFNR+ +++++V + G+TRDR+Y F+++DT GI D Sbjct: 5 TVAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTTGEWLNRKFSLIDTGGI-DD 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + +Q+ Q ++A+ EA +I+F++ K G+T D ++ L + N P+I+V NK+D Sbjct: 64 VDAPFMEQIKHQADIAMTEADVIVFVVSGKEGVTDADEYVSKILYRTNKPVILVVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + Y+ YSL + +S+ H +GT ++ I + N P+E EE Sbjct: 124 PEMRSDIYDFYSLGLGDPYPVSSVHGIGTGDVLDAIVE-------NLPVE--------EE 168 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 +I ++ +++GRPNVGKS+LIN +LG R++ +G TRD++ Sbjct: 169 DENPDI--------------IKFSLIGRPNVGKSSLINAILGEERVIASPIAGTTRDAID 214 Query: 244 ISW-NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 ++ + + + DTAGMRK ++ E+ E+ +V +SM+++ + +++++A + Sbjct: 215 TNFTDSEGQEYTMIDTAGMRKSGKVYENTEKYSVMRSMRAIDRSDIVLMVINAEEGIREY 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D RI G +++ +NKWD + + + + I +S T + Sbjct: 275 DKRIAGFAHEAGKGIIIVVNKWDTIEKDNHTVAKWEEDIRDQFQFLSYAPIIFVSAATKQ 334 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 L+ L + +I+ RI ++ LN + NP PT + ++ Y TQ+ PP+ Sbjct: 335 RLNKLPDMIKKISVSQNKRIPSAVLNDVIMDAIAINPTPTDKGKRLKIFYGTQVSVKPPT 394 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 F+IF + SY R+L N++R F G PI + + K Sbjct: 395 FVIFVNEEELMHFSYMRFLENQIRAAFGFEGTPINLIARKRK 436 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 39/130 (30%), Positives = 67/130 (51%), Gaps = 13/130 (10%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIIN-GVIFNIVDTAGI 60 I +++G PNVGKS+L N ++ ++ + G TRD + + G + ++DTAG+ Sbjct: 174 IIKFSLIGRPNVGKSSLINAILGEERVIASPIAGTTRDAIDTNFTDSEGQEYTMIDTAGM 233 Query: 61 -------ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIP 113 + + S+ + M AI+ + ++L +I+++ GI YD I F + Sbjct: 234 RKSGKVYENTEKYSVMRSMR-----AIDRSDIVLMVINAEEGIREYDKRIAGFAHEAGKG 288 Query: 114 IIIVSNKMDT 123 IIIV NK DT Sbjct: 289 IIIVVNKWDT 298 >gi|315186467|gb|EFU20227.1| ribosome-associated GTPase EngA [Spirochaeta thermophila DSM 6578] Length = 450 Score = 223 bits (567), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 141/452 (31%), Positives = 221/452 (48%), Gaps = 27/452 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + IVG PNVGKSTLFNRL+ ++ A+ PG+TRD + + G +VDT GI + Sbjct: 20 VVIVGRPNVGKSTLFNRLIGRRKAITHPRPGVTRDAVEETWELGGGRVLLVDTGGITSER 79 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + ++ ++ A ++L ++D + P D + LR +I+V NK+D Sbjct: 80 GGIFEPLVRERALREVDRADVLLLVLDVTE-LVPEDEELLELLRPYKERLILVVNKVDNE 138 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + +SL F + SAEH G EL +E Sbjct: 139 AREEMAWNFFSLGFDTVCFTSAEHGRGIDELE-------------------------QEI 173 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 + + EG + + + +A++G+PN GKSTL+N LLG R L G TRD + Sbjct: 174 ERRLVVPEGGGDAPSAPE-IDVAILGKPNTGKSTLLNTLLGEERALVSDAPGTTRDLLEG 232 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + ++ I DTAG+R+ SRI + LE +V++S++ + +L+DA +QD Sbjct: 233 RFQYRGRWFRIVDTAGIRRRSRIEDDLEFYSVRRSLKVIEEAHVVFLLIDAQEGLTEQDK 292 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 +I G V+L LNKWD ++ N Q ++ + P + I IS R GEG+ Sbjct: 293 KIAAVAQRRGRGVILVLNKWDALTPVPNQFQAMKARIRFFFPHMDYAPIVKISARRGEGI 352 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 D L+ + L + R+ T LN L++ + + PPP+ R +++Y+TQ+ S P FL Sbjct: 353 DKLLDTALMLRDELGKRVETGPLNRALERWKEEVPPPSRKGRRYKVRYMTQVSSMPVRFL 412 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 +F P SY YL NR+R F S IPI Sbjct: 413 LFVNRREGFPSSYLSYLENRVRKEFGFSHIPI 444 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 36/106 (33%), Positives = 61/106 (57%), Gaps = 2/106 (1%) Query: 191 SEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKN 250 +EG+ +V S+ R+ +VGRPNVGKSTL NRL+G + +T + G+TRD+V +W Sbjct: 5 TEGRRTVGVQSRLPRVVIVGRPNVGKSTLFNRLIGRRKAITHPRPGVTRDAVEETWELGG 64 Query: 251 HPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDAT 296 + + DT G+ S E +++++ V + +++LD T Sbjct: 65 GRVLLVDTGGI--TSERGGIFEPLVRERALREVDRADVLLLVLDVT 108 >gi|167758361|ref|ZP_02430488.1| hypothetical protein CLOSCI_00701 [Clostridium scindens ATCC 35704] gi|167664258|gb|EDS08388.1| hypothetical protein CLOSCI_00701 [Clostridium scindens ATCC 35704] Length = 442 Score = 223 bits (567), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 137/469 (29%), Positives = 232/469 (49%), Gaps = 41/469 (8%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 +AIVG PNVGKSTLFN L +++V + PG+TRDR+Y F ++DT GI Sbjct: 5 VVAIVGRPNVGKSTLFNVLAGGMISIVKDTPGVTRDRIYADVNWLDKDFTLIDTGGIEPE 64 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 I QM +Q ++AI+ A +I+F+ D + G+ D + LR+ P+++V NK+D Sbjct: 65 SKDIILSQMREQAQIAIDTADVIIFITDVRQGLVDSDSKVADMLRRSGKPVVLVVNKVD- 123 Query: 124 RIAQRNF-------YEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIE 176 NF YE Y+L + V ISA LG ++ + + +P H Sbjct: 124 -----NFDKFMPDVYEFYNLGIGDPVPISAASRLGIGDMLDQV----AEHFPEH------ 168 Query: 177 NNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSG 236 + + RIA+VG+PNVGKS++IN+LLG R++ +G Sbjct: 169 ------------------GREEEEDERPRIAIVGKPNVGKSSIINKLLGEQRVIVSDIAG 210 Query: 237 ITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDAT 296 TRD++ + DTAG+R+ ++I E LE+ ++ +++ +V + ++++DAT Sbjct: 211 TTRDAIDTDIVYNGKEYVFIDTAGLRRKNKIKEELERYSIIRTVTAVERADVVLIVIDAT 270 Query: 297 IPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTI 356 +QD +I G +++ +NKWD + +++ ++ + L + I + Sbjct: 271 EGVTEQDAKIAGIAHERGKGIIIVVNKWDAIEKNDKTMREYDSEVRRVLSFMPYAEIMYV 330 Query: 357 SGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQI 416 S TG+ L+ L + + + RI T LN + + PP+ + +L YITQ+ Sbjct: 331 SAETGQRLNKLYDKIDMVIENQTLRIATGVLNEIMAEAVAMQQPPSDKGKRLKLYYITQV 390 Query: 417 QSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 PP+F+IF + SY RYL N++R F G ++ + K+ Sbjct: 391 AVKPPTFVIFVNDKELMHFSYTRYLENKIREAFGFRGTSLKFFVRERKD 439 >gi|160903053|ref|YP_001568634.1| small GTP-binding protein [Petrotoga mobilis SJ95] gi|160360697|gb|ABX32311.1| small GTP-binding protein [Petrotoga mobilis SJ95] Length = 460 Score = 223 bits (567), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 143/467 (30%), Positives = 239/467 (51%), Gaps = 27/467 (5%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+ I+G PNVGKSTLFNR++ ++ ++V + PG+TRD + + + F +VDT GI + Sbjct: 5 TVLIIGKPNVGKSTLFNRMIGERKSIVHDMPGVTRDNVSSTIQWDDISFTLVDTCGIFEQ 64 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 +I ++ ++ + L++F+ID K G+T D+ I +LRK N +I+V NK + Sbjct: 65 PEDNIEERQKKIIFESLKDVSLVIFVIDGKIGLTSEDYHIADYLRKTNSKVILVINKAEN 124 Query: 124 --RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 + EIYSL F E + +SAEH+ L I K N E +++ K + Sbjct: 125 FEKYELEMKPEIYSLGFGEGIPVSAEHNKNIFTLMDTIANTLKTSGLNSE-ESVDSEKDS 183 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 EE +++++VGRPNVGKS+L N ++G R + G TRD+ Sbjct: 184 EE--------------------IKVSIVGRPNVGKSSLFNSIIGSERAIVSEIPGTTRDA 223 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRI-TESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 + ++ DTAGMRK S I S+E ++ +++ ++ + I+++D+T Sbjct: 224 IDHLVTMGDNTFRFIDTAGMRKKSTIHYASIEMFSISRTINAIEKSDVVILVVDSTEGIT 283 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 QD I+ G ++A NKWD+VS+ ++ K L + + S Sbjct: 284 HQDKSIIGIAEKRGKGTIIAFNKWDLVSNNHQRKEEFFNYFEKELYFVNYSPLVFTSAPK 343 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G+ +L+ ++ E+ K +I TS LN+ L+K L PPP + + Y TQ+ + P Sbjct: 344 RWGIQELITAIKEVEKSRNKKIPTSALNAALEKYTLVTPPPIKKGKRIKFYYATQVGTKP 403 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINF--SLSGIPIRMCFQSSKN 465 P F+ + P IP+ Y++ L N +R N+ G PI + F++ KN Sbjct: 404 PVFVFYSNLPYDIPKYYQQGLRNMIR-NYIDPFIGSPIFLKFEARKN 449 >gi|222152562|ref|YP_002561737.1| GTP-binding protein EngA [Streptococcus uberis 0140J] gi|254783170|sp|B9DTQ3|DER_STRU0 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|222113373|emb|CAR41004.1| GTP-binding protein EngA [Streptococcus uberis 0140J] Length = 436 Score = 223 bits (567), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 131/462 (28%), Positives = 236/462 (51%), Gaps = 31/462 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AIVG PNVGKSTLFNR+ +++++V + G+TRDR+Y F+++DT GI D Sbjct: 5 TVAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRKFSLIDTGGI-DD 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + +Q+ Q ++A++EA +I+F++ K G+T D + L + N P+I+ NK+D Sbjct: 64 VDAPFMEQIKHQAQIAMDEADVIVFVVSGKEGVTDADEYVAKMLYRTNKPVILAVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + Y+ Y+L + S+ H +GT ++ I +K P E+ +N Sbjct: 124 PEMRNDIYDFYALGLGDPYPASSVHGIGTGDILDAII----EKLPVEEEEINDNT----- 174 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 +R +++GRPNVGKS+LIN +LG R++ +G TRD++ Sbjct: 175 --------------------IRFSLIGRPNVGKSSLINAILGEERVIASPVAGTTRDAID 214 Query: 244 ISW-NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + + + DTAGMRK ++ E+ E+ +V ++M+++ + +++++A + Sbjct: 215 THFTDQDGQEYNMIDTAGMRKSGKVYENTEKYSVMRAMRAIDRSDVVLLVINAEEGIREY 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D RI G +++ +NKWD++ + + + I +S T + Sbjct: 275 DKRIAGFAHEAGKGMIIVVNKWDLLEKDNHTVAKWEADIRDQFQFLSYAPIIFVSALTKQ 334 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 L+ L + +I++ RI ++ LN + NP PT + ++ Y TQ+ PP+ Sbjct: 335 RLNKLPELIKKISESQNKRIPSAVLNDVIMDAIAINPTPTDKGKRLKIFYATQVSVKPPT 394 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 F+IF + SY R+L N++R F+ G PI + + K Sbjct: 395 FVIFVNEEELMHFSYLRFLENQIRAAFTFEGTPIHLIARKRK 436 >gi|306834169|ref|ZP_07467289.1| ribosome-associated GTPase EngA [Streptococcus bovis ATCC 700338] gi|304423742|gb|EFM26888.1| ribosome-associated GTPase EngA [Streptococcus bovis ATCC 700338] Length = 436 Score = 223 bits (567), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 135/462 (29%), Positives = 238/462 (51%), Gaps = 31/462 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AIVG PNVGKSTLFNR+ +++++V + G+TRDR+Y F+++DT GI D Sbjct: 5 TVAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTTGEWLNRKFSLIDTGGI-DD 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + +Q+ Q ++A+ EA +I+F++ K G+T D ++ L + N P+I+V NK+D Sbjct: 64 VDAPFMEQIKHQADIAMTEADVIVFVVSGKEGVTDADEYVSKILYRTNKPVILVVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + Y+ YSL + +S+ H +GT ++ I + N P+E EE Sbjct: 124 PEMRSDIYDFYSLGLGDPYPVSSVHGIGTGDVLDAIVE-------NLPVE--------EE 168 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 +I ++ +++GRPNVGKS+LIN +LG R++ +G TRD++ Sbjct: 169 DENPDI--------------IKFSLIGRPNVGKSSLINAILGEERVIASPIAGTTRDAID 214 Query: 244 ISW-NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 ++ + + DTAGMRK ++ E+ E+ +V +SM+++ + +++++A + Sbjct: 215 TNFTDSDGQEYTMIDTAGMRKSGKVYENTEKYSVMRSMRAIDRSDIVLMVINAEEGIREY 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D RI G +++ +NKWD + + + + I +S T + Sbjct: 275 DKRIAGFAHEAGKGIIIVVNKWDTIEKDNHTVVKWEEDIRDQFQFLSYAPIVFVSAATKQ 334 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 L+ L + +I+ RI ++ LN + NP PT + ++ Y TQ+ PP+ Sbjct: 335 RLNKLPDMIKKISASQNKRIPSAVLNDVIMDAIAINPTPTDKGKRLKIFYGTQVSVKPPT 394 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 F+IF + SY R+L N++R F G PI + + K Sbjct: 395 FVIFVNEEELMHFSYMRFLENQIRAAFGFEGTPINLIARKRK 436 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 39/130 (30%), Positives = 67/130 (51%), Gaps = 13/130 (10%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAI-INGVIFNIVDTAGI 60 I +++G PNVGKS+L N ++ ++ + G TRD + +G + ++DTAG+ Sbjct: 174 IIKFSLIGRPNVGKSSLINAILGEERVIASPIAGTTRDAIDTNFTDSDGQEYTMIDTAGM 233 Query: 61 -------ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIP 113 + + S+ + M AI+ + ++L +I+++ GI YD I F + Sbjct: 234 RKSGKVYENTEKYSVMRSMR-----AIDRSDIVLMVINAEEGIREYDKRIAGFAHEAGKG 288 Query: 114 IIIVSNKMDT 123 IIIV NK DT Sbjct: 289 IIIVVNKWDT 298 >gi|297623927|ref|YP_003705361.1| ribosome-associated GTPase EngA [Truepera radiovictrix DSM 17093] gi|297165107|gb|ADI14818.1| ribosome-associated GTPase EngA [Truepera radiovictrix DSM 17093] Length = 439 Score = 223 bits (567), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 142/464 (30%), Positives = 250/464 (53%), Gaps = 45/464 (9%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIIN-GVIFNIVDTAGIADG 63 +AIVG PNVGKS+LFNRLV ++ A+V + PG+TRD + + G F ++DT G+ Sbjct: 4 VAIVGRPNVGKSSLFNRLVGRREAIVADMPGVTRDVKEARVEDDLGRSFTLLDTGGLW-- 61 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 N + + + E A+ +A L+LF +D +A ++ D+ + ++LR P ++++ K+D Sbjct: 62 SNDEWQEPIKRRIEAALADAALVLFCVDGRAPLSAADYEVAAWLRNVGKPTLLLATKLDD 121 Query: 124 RIAQRN--FYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 + + FYE+Y L F E + ISAEH GT EL IF ++ P Sbjct: 122 PRHEESPEFYELYGLGFGEPLAISAEHARGTYELLDTIF----ERLP------------- 164 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 + + + ++ +R+A++GRPNVGKS+L+N L+G R++ G TRDS Sbjct: 165 ------------EDADEAEAEEVRVAIIGRPNVGKSSLLNALVGDERVIVADVPGTTRDS 212 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 V + +++ P + DTAG+R+ + +E + +S +++ + ++++D PFE Sbjct: 213 VDVRFDFGGRPFVLIDTAGIRR--KPDGDVEYYSKLRSEEALMRSDVAVLVVD---PFEL 267 Query: 302 QD--LRIVDSVFNTGHAVVLALNKWDMVSDK-LNLLQDLRTKAIKNLPQIGDIYINTISG 358 D LR+ + G VVL +NKWD+V D+ L + + + +L +Y + ++ Sbjct: 268 GDHELRLANLALQAGKPVVLTINKWDLVPDEALREFEKNIAQVLGHLDFAPKVYTSALNA 327 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 GL DL+ +V+ + + R+ TS +N WL+ + PP R +L Y TQ Sbjct: 328 Y---GLHDLLAAVIRVYDTARFRVPTSEVNGWLEVWTQRQAPPNFKGRPLKLLYGTQADV 384 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 +PP+F+I + +Y++Y++NR+R + +PIR+ ++S Sbjct: 385 APPTFVISVNNEQFVTRAYEQYILNRIREDLGFKEVPIRLIWKS 428 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 7/123 (5%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWK-NHPIEIFDTAGMRK 263 ++A+VGRPNVGKS+L NRL+G + G+TRD + DT G+ Sbjct: 3 KVAIVGRPNVGKSSLFNRLVGRREAIVADMPGVTRDVKEARVEDDLGRSFTLLDTGGL-- 60 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVL-LDATIPFEKQDLRIVDSVFNTGHAVVLALN 322 + Q+ +K+ +++ ++ +D P D + + N G +L Sbjct: 61 ---WSNDEWQEPIKRRIEAALADAALVLFCVDGRAPLSAADYEVAAWLRNVGKPTLLLAT 117 Query: 323 KWD 325 K D Sbjct: 118 KLD 120 >gi|325978979|ref|YP_004288695.1| GTP-binding protein EngA [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325178907|emb|CBZ48951.1| GTP-binding protein EngA [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 436 Score = 223 bits (567), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 138/466 (29%), Positives = 246/466 (52%), Gaps = 39/466 (8%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AIVG PNVGKSTLFNR+ +++++V + G+TRDR+Y F+++DT GI D Sbjct: 5 TVAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYTTGEWLNRKFSLIDTGGI-DD 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + +Q+ Q ++A+ EA +I+F++ K G+T D ++ L + N P+I+V NK+D Sbjct: 64 VDAPFMEQIKHQADIAMTEADVIVFVVSGKEGVTDADEYVSKILYRTNKPVILVVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + Y+ YSL + +S+ H +GT ++ I + N P+E EE Sbjct: 124 PEMRSDIYDFYSLGLGDPYPVSSVHGIGTGDVLDAIVE-------NLPVE--------EE 168 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 +I ++ +++GRPNVGKS+LIN +LG R++ +G TRD++ Sbjct: 169 DENPDI--------------IKFSLIGRPNVGKSSLINAILGEERVIASPIAGTTRDAID 214 Query: 244 ISW-NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 ++ + + + DTAGMRK ++ E+ E+ +V +SM+++ + +++++A + Sbjct: 215 TNFTDSEGQEYTMIDTAGMRKSGKVYENTEKYSVMRSMRAIDRSDIVLMVINAEEGIREY 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLL----QDLRTKAIKNLPQIGDIYINTISG 358 D RI G +++ +NKWD + + + +D+R + + L I+ +S Sbjct: 275 DKRIAGFAHEAGKGIIIVVNKWDTIEKDNHTVVKWEEDIRDQ-FQFLSYAPIIF---VSA 330 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 T + L+ L + +I+ RI ++ LN + NP PT + ++ Y TQ+ Sbjct: 331 ATKQRLNKLPDMIKKISASQNKRIPSAVLNDVIMDAIAINPTPTDKGKRLKIFYGTQVSV 390 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 PP+F+IF + SY R+L N++R F G PI + + K Sbjct: 391 KPPTFVIFVNEEELMHFSYMRFLENQIRSAFGFEGTPINLIARKRK 436 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 39/130 (30%), Positives = 67/130 (51%), Gaps = 13/130 (10%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIIN-GVIFNIVDTAGI 60 I +++G PNVGKS+L N ++ ++ + G TRD + + G + ++DTAG+ Sbjct: 174 IIKFSLIGRPNVGKSSLINAILGEERVIASPIAGTTRDAIDTNFTDSEGQEYTMIDTAGM 233 Query: 61 -------ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIP 113 + + S+ + M AI+ + ++L +I+++ GI YD I F + Sbjct: 234 RKSGKVYENTEKYSVMRSMR-----AIDRSDIVLMVINAEEGIREYDKRIAGFAHEAGKG 288 Query: 114 IIIVSNKMDT 123 IIIV NK DT Sbjct: 289 IIIVVNKWDT 298 >gi|220904745|ref|YP_002480057.1| GTP-binding protein EngA [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869044|gb|ACL49379.1| small GTP-binding protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 454 Score = 222 bits (566), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 145/473 (30%), Positives = 240/473 (50%), Gaps = 46/473 (9%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGV-IFNIVDTAGIADG 63 I +VG PNVGKSTLFNRL++ A+ + PG+TRDR+ G G+ F IVDT GI Sbjct: 8 IILVGRPNVGKSTLFNRLIRSNRAITHDRPGVTRDRMEGVVRRKGLPAFGIVDTGGITLD 67 Query: 64 KNCSIA----------KQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIP 113 + + + + DQTE A+ +A + F++D + G+ P D + + +R+K +P Sbjct: 68 AHAMVVEGPEGIRGFEQDILDQTEAAMKDAAAVAFVVDGRDGLLPLDEHLAAHVRRKGLP 127 Query: 114 IIIVSNKMDTRIAQR---NFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNH 170 I V NK+D A+R E + L F ++ +SAEH L + + ++ Sbjct: 128 TICVVNKVDG--AEREDEQLAEFHILGFP-LLAVSAEHGHNIRALVEDLADLLPEES--- 181 Query: 171 PLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLL 230 +EE P LR+A++GRPN GKS+LIN L G R++ Sbjct: 182 ----------SEEPPA--------------PPALRLAMLGRPNAGKSSLINALSGEERMI 217 Query: 231 TGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTI 290 +G TRDSV + + DTAG+R+ ++IT+S+E+ +V +++S + T+ Sbjct: 218 VSDVAGTTRDSVDVRFCRNGKDYVFVDTAGVRRRTKITDSVEKYSVNSAIKSSTKADVTL 277 Query: 291 VLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGD 350 + LDA +QD R++D + ++ +NK D+ N L L+ + L Sbjct: 278 LTLDAAEGVSQQDKRLMDMLNTRKTPFMVLINKCDLAPR--NALDQLKKNISQMLAFCPH 335 Query: 351 IYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRL 410 + + +S TG+ L+ ++ I++ RI T LN +++ ++ PP + + Sbjct: 336 VPVMPVSALTGKDLEKILPLAQRIHEECSIRIPTGRLNRAMEEVLTRHQPPVVKRARAKF 395 Query: 411 KYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSS 463 Y+TQ +S PP+F+ F + ++PESY RYL LR F + P+R+ +SS Sbjct: 396 FYLTQAESEPPTFVFFVSDATRVPESYSRYLERALRKIFGIVHAPMRLHLRSS 448 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 29/58 (50%), Positives = 36/58 (62%), Gaps = 1/58 (1%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHP-IEIFDTAGM 261 RI +VGRPNVGKSTL NRL+ NR +T + G+TRD + K P I DT G+ Sbjct: 7 RIILVGRPNVGKSTLFNRLIRSNRAITHDRPGVTRDRMEGVVRRKGLPAFGIVDTGGI 64 >gi|223994975|ref|XP_002287171.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220976287|gb|EED94614.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 460 Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 153/479 (31%), Positives = 241/479 (50%), Gaps = 48/479 (10%) Query: 5 IAIVGAPNVGKSTLFNRLV--KKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA- 61 IA+VG PNVGKS L NRL + A+V + GITRDR Y A G F +VDT G+ Sbjct: 3 IAVVGRPNVGKSALVNRLAGTQSGGAIVADEEGITRDRTYRNAEFLGEAFQLVDTGGLVF 62 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRK---KNIPIIIVS 118 D + AK++ +Q +AI E+ ++ ++D + G T D + FLRK K +P+I+ Sbjct: 63 DDNDALFAKEIREQAMIAIEESAGVILVVDGQMGPTSMDEQLAIFLRKEVLKKMPVILAV 122 Query: 119 NKMDTRIAQRNFY---EIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 NK ++ + Y + ++L E +SA H +GT+E+ +F + PL+ Sbjct: 123 NKCESD--KNGAYLASQFWNLGLGEPFAVSALHGVGTAEVMEKMFDDIAK-----PLD-- 173 Query: 176 ENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQS 235 E+ E I +A++GRPNVGKS+LIN + G NR + + Sbjct: 174 -----GEDDTDEEIN---------------VAIIGRPNVGKSSLINTIFGSNRAIVSDVA 213 Query: 236 GITRDSVSI-----SWNWKNHPI--EIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCET 288 G TRDS+ S + + P DTAG+R+ +I E V ++++++R + Sbjct: 214 GTTRDSIDAIMERPSSDPEGLPTIYRFVDTAGIRRKGKIEFGPEFFMVNRALRAIRRADV 273 Query: 289 TIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIK-NLPQ 347 +++LDAT +QD + + + G A V+ NKWD V DK + D K + LPQ Sbjct: 274 VLLVLDATAGVTEQDRVLAQKISDDGRACVILCNKWDAVIDKDSSTYDQSVKYFREELPQ 333 Query: 348 IGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRY 407 I I +S TG+ + + +V + RI+TS LN L+ L PPP N Sbjct: 334 IRWAPILFVSAATGQRVGKIYEAVDSAVNAHRRRISTSVLNEVLRDATLWQPPPARRNGA 393 Query: 408 N-RLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINF-SLSGIPIRMCFQSSK 464 ++ Y +Q+ + PP+ ++F PN I ++YKRYL ++R + PIR F+ + Sbjct: 394 QAKIYYGSQVSTRPPTIVVFVNDPNLINDNYKRYLDRKMRESLDGFESTPIRWMFRGRR 452 >gi|15828559|ref|NP_325919.1| GTP-binding protein EngA [Mycoplasma pulmonis UAB CTIP] gi|26006733|sp|Q98RC1|DER_MYCPU RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|14089501|emb|CAC13261.1| GTP-BINDING PROTEIN [Mycoplasma pulmonis] Length = 435 Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 141/460 (30%), Positives = 237/460 (51%), Gaps = 34/460 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNRLV K++++V + PG+TRDR+Y +G F I+DT GI Sbjct: 10 VAIVGKPNVGKSTLFNRLVGKRVSIVYDQPGVTRDRIYENINWSGKNFRIIDTGGIV-VS 68 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +Q+ Q ++AI E+ +ILF+ID IT D I S LR +++++NK+D Sbjct: 69 DQPFVEQIRIQAQIAIEESEIILFVIDGSEEITSDDLYIASILRNSKKKVLVLANKLDNN 128 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + Y IYSL F++ +IS+ H G E+ L+ + N E Sbjct: 129 --KNEDYSIYSLGFEDYYKISSVHGEGIGEV----------------LDKVINLMNFEND 170 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 E++ +IA++G+PN GKS+L+N L R + +G TRDS+ Sbjct: 171 QDEDL--------------FKIAILGKPNAGKSSLLNALTKQERSIVSEIAGTTRDSIKS 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + ++ I DTAG+ + S++ ES++ + ++M S+ + +I+++DAT + Sbjct: 217 TIEIEDQKFFIIDTAGINRKSKLVESVDHYALMRAMGSLDESDLSIIIIDATEELSHFNA 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 RI+ + ++ +NKWD++ + N + + K + +P I + I IS + L Sbjct: 277 RIIGYASDKKKPTIIVINKWDLIKKETNTMIEYEKKLREKMPFISWMPIVFISALKSQRL 336 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 + L ++++ I + LN L Q N P T + +K+I + P+FL Sbjct: 337 NKLEKVIIQVKNNLSREIKQNLLNDLLVDMQTMN-PLTFKGKKLEIKHIKKTNDPVPTFL 395 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 +F PN + SY RY+ N++R F +G PI + + +K Sbjct: 396 LFVNNPNIVHFSYLRYIENQIRDYFDFTGCPINLVLKKNK 435 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 40/129 (31%), Positives = 67/129 (51%), Gaps = 3/129 (2%) Query: 197 VKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIF 256 +K ++K +A+VG+PNVGKSTL NRL+G + Q G+TRD + + NW I Sbjct: 1 MKPLTKNNLVAIVGKPNVGKSTLFNRLVGKRVSIVYDQPGVTRDRIYENINWSGKNFRII 60 Query: 257 DTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHA 316 DT G+ + +EQ ++ + ++ E + ++D + DL I + N+ Sbjct: 61 DTGGIVVSDQ--PFVEQIRIQAQI-AIEESEIILFVIDGSEEITSDDLYIASILRNSKKK 117 Query: 317 VVLALNKWD 325 V++ NK D Sbjct: 118 VLVLANKLD 126 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 67/125 (53%), Gaps = 6/125 (4%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 ++ IAI+G PN GKS+L N L K++ ++V G TRD + I F I+DTAGI Sbjct: 175 LFKIAILGKPNAGKSSLLNALTKQERSIVSEIAGTTRDSIKSTIEIEDQKFFIIDTAGI- 233 Query: 62 DGKNCSIAKQMNDQTEL----AINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIV 117 + + + ++ + +++E+ L + +ID+ ++ ++ I + K P IIV Sbjct: 234 -NRKSKLVESVDHYALMRAMGSLDESDLSIIIIDATEELSHFNARIIGYASDKKKPTIIV 292 Query: 118 SNKMD 122 NK D Sbjct: 293 INKWD 297 >gi|126658269|ref|ZP_01729419.1| GTP-binding protein EngA [Cyanothece sp. CCY0110] gi|126620418|gb|EAZ91137.1| GTP-binding protein EngA [Cyanothece sp. CCY0110] Length = 452 Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 131/465 (28%), Positives = 232/465 (49%), Gaps = 37/465 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKSTL NRL K + A+V + PGITRDR Y A F +VDT G+ Sbjct: 6 VAIIGRPNVGKSTLVNRLAKDRQAIVHDQPGITRDRTYRPAFWRDRDFQVVDTGGLVFDD 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 + + +Q A+ EA +F++D + G T D I+ +LR++ +P+++ NK ++ Sbjct: 66 DTEFLPLIREQAMAALTEASAAIFVVDGQLGPTAGDREISDWLRRQQVPVLLAVNKCESP 125 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 E + L E IS H GT EL + Y P E+ + + N Sbjct: 126 EQGLMQAAEFWELGLGEPYPISGIHGSGTGELLDELI-----TYLPSPDELPDREEIN-- 178 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 ++++GRPNVGKS+L+N LG R + SG TRD++ Sbjct: 179 ----------------------VSIIGRPNVGKSSLLNAFLGEQRAIVSPISGTTRDTID 216 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + + DTAG+R+ + E ++ ++ +++R + ++++DA QD Sbjct: 217 TVVERGENTYRLIDTAGIRRKKNVNYGAEFFSINRAFKAIRRADVVLLVIDAIDGVTDQD 276 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNL--PQIGD-IYINTISGRT 360 +++ D + + G A ++ +NKWD V + + + + + L + D I+++ +SG+ Sbjct: 277 IKLADRIIDEGRAAIIVVNKWDAVEKDSYTIYEYKQRVMDRLYFMEWADIIFVSAMSGKR 336 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKT-QLQNPPPTIFNRYNRLKYITQIQSS 419 E + +L+ +E + + R+ TS +N L++ + +PP + + R+ Y TQ+ S Sbjct: 337 VENIFELVDLAVEEH---RRRVNTSVVNEVLEEAVKWHSPPTSRQGKQGRIYYGTQVSSQ 393 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 PP+ +F P + ++YKRY+ + R G PIR+ ++ K Sbjct: 394 PPTITLFVNDPKRFNDNYKRYIERQFREQIGFPGTPIRLLWRGKK 438 >gi|326780198|ref|ZP_08239463.1| ribosome-associated GTPase EngA [Streptomyces cf. griseus XylebKG-1] gi|326660531|gb|EGE45377.1| ribosome-associated GTPase EngA [Streptomyces cf. griseus XylebKG-1] Length = 489 Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 138/462 (29%), Positives = 234/462 (50%), Gaps = 40/462 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD-- 62 +A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ +A G F +VDT G Sbjct: 54 LAVVGRPNVGKSTLVNRIIGRREAVVQDKPGVTRDRVSYEAEWAGRRFKVVDTGGWEQDV 113 Query: 63 -GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 G + S+A Q E AI A ++F++DS G T D A+ LR+ P+++ +NK+ Sbjct: 114 LGLDASVAAQ----AEYAIETADAVVFVVDSTVGATDTDEAVVKLLRRAGKPVVLCANKV 169 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D + + + ++SL E +S+ H GT ++ + + P+ P + Sbjct: 170 DGQSGEADATALWSLGLGEPYPVSSLHGRGTGDMLDAVLEAL----PDAPAQKFGTA--- 222 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 + P RIA++GRPNVGKS+L+N++ G +R++ +G TRD Sbjct: 223 ------------------LGGPRRIALIGRPNVGKSSLLNKVAGEDRVVVNELAGTTRDP 264 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 V N + DTAG+R+ + E + ++ +V E +VL+D++ Sbjct: 265 VDELINLGGITWKFIDTAGIRRRVHLQEGADYYASLRTAAAVEKAEVAVVLIDSSESISV 324 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVSD--KLNLLQDLRTKAIKNLPQIGDIYINTISGR 359 QD RI+ G A+V+A NKWD + + + L +++ T+ L QI +S Sbjct: 325 QDQRIITMAVEAGRALVVAFNKWDTLDEERRYYLEREIETE----LAQISWAPRVNVSAV 380 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 TG ++ L+ ++ + W+TR+ T LN++L + +P P + R+ + TQ + Sbjct: 381 TGRHMEKLVPAIETAIEGWETRVPTGRLNAFLGEIVASHPHPIRGGKQPRILFGTQAGTK 440 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 PP F++F + + Y+R++ RLR F G PI + + Sbjct: 441 PPRFVLFAS--GFLEHGYRRFVERRLREEFGFEGTPIHISVR 480 >gi|229817644|ref|ZP_04447926.1| hypothetical protein BIFANG_02914 [Bifidobacterium angulatum DSM 20098] gi|229785433|gb|EEP21547.1| hypothetical protein BIFANG_02914 [Bifidobacterium angulatum DSM 20098] Length = 709 Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 141/461 (30%), Positives = 224/461 (48%), Gaps = 36/461 (7%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI- 60 + +AIVG PNVGKS+L NR++ ++AVV + PG+TRDR+ A G F +VDT G Sbjct: 272 VGVLAIVGRPNVGKSSLVNRILGHRVAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWE 331 Query: 61 --ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVS 118 +G + +IA Q E+A+N A ++ ++D + G+T + I LR P+ + Sbjct: 332 VDVEGIDSAIASQ----AEVAVNLADAVVLVVDGQVGLTNTEERIVKMLRASGKPVTLAV 387 Query: 119 NKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 NK+D R ++ E + L E +SA H G EL K+ Sbjct: 388 NKIDDRESEYLAAEFWKLGLGEPYAVSAMHGRGVGELLDAAIDSLKK------------- 434 Query: 179 KRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 +E S S R+A+VGRPNVGKS+L+N+L R + +G T Sbjct: 435 ------------AEKTSGYLTPSHLRRVALVGRPNVGKSSLLNQLANEERTVVNDLAGTT 482 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RD V + DTAG+++ + E + ++ ++ CE +VL DA++P Sbjct: 483 RDPVDEIVSMDGEDWLFIDTAGIKRRQHKLKGAEYYSSLRTQAAIERCELALVLFDASVP 542 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 QDL+++ S + G A+VL NKWD + D+ + Q L ++ IS Sbjct: 543 ISDQDLKVMSSAVDAGRAIVLVFNKWDAM-DEFD-KQRLERLWATEFDRVTWAQRVNISA 600 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 +TG + L ++ E + W TR+ T LN++L + Q +P P + R+ + TQ + Sbjct: 601 KTGWHTNRLTRAMREALQSWDTRVPTGKLNAFLGQLQAAHPHPLRGGKQPRILFATQAST 660 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 PP F+IF T + Y+R++ LR F G PI++ Sbjct: 661 RPPRFVIFAT--GFLEHGYRRFIERSLREEFGFEGSPIQIS 699 >gi|183982543|ref|YP_001850834.1| GTP-binding protein, EngA [Mycobacterium marinum M] gi|238690962|sp|B2HRU9|DER_MYCMM RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|183175869|gb|ACC40979.1| GTP-binding protein, EngA [Mycobacterium marinum M] Length = 469 Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 148/455 (32%), Positives = 226/455 (49%), Gaps = 34/455 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA-DG 63 +AIVG PNVGKSTL NR++ ++ AVV + PG+TRDR+ A+ NG F + DT G D Sbjct: 32 LAIVGRPNVGKSTLVNRILGRREAVVQDIPGVTRDRVSYDALWNGRRFVVQDTGGWEPDA 91 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 K + + + +Q +A+ A ++ ++D+ G T D A L + P+ + +NK+D+ Sbjct: 92 KG--LQQLVAEQASVAMRTADAVVLVVDATVGATTADEAAARILLRSGKPVFLAANKVDS 149 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 A+ + ++S+ E ISA H G ++L + K K P Sbjct: 150 DKAEADAATLWSMGLGEPHAISAMHGRGVADLLDTVLK----KLP--------------- 190 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 E SV P R+A+VG+PNVGKS+L+N+L G R + +G T D V Sbjct: 191 --------EVAESVSAGGGPRRVALVGKPNVGKSSLLNKLAGDERSVVHDVAGTTVDPVD 242 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 DTAG+R+ E ++ ++ E ++L+DA+ P +QD Sbjct: 243 SLIELGGKVWRFVDTAGLRRKVGQASGHEFYASVRTRGAIDAAEVVVLLIDASQPLTEQD 302 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 LR++ V G AVVLA NKWD+V + L D + L QI IS +TG Sbjct: 303 LRVLSMVIEAGRAVVLAYNKWDLVDEDRRDLLDREID--RELVQIRWAQRVNISAKTGRA 360 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 + L+ ++ W TRI T LNSW+++ PPP + R+ + TQ + PP+F Sbjct: 361 VQKLVPAMETALASWDTRIPTGPLNSWIKEVVAATPPPVRGGKQPRILFATQATARPPTF 420 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 ++F T + Y+R+L RLR F G PIR+ Sbjct: 421 VLFTT--GFLEAGYRRFLERRLRETFGFEGSPIRI 453 >gi|328881436|emb|CCA54675.1| GTP-binding protein EngA [Streptomyces venezuelae ATCC 10712] Length = 482 Score = 221 bits (564), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 139/469 (29%), Positives = 235/469 (50%), Gaps = 54/469 (11%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD-- 62 +A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ +A G F +VDT G Sbjct: 47 LAVVGRPNVGKSTLVNRIIGRREAVVEDKPGVTRDRVTYEAEWAGRRFKVVDTGGWEQDV 106 Query: 63 -GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 G + S+A Q E AI A LF++D+ G T D A+ LR+ P+++ +NK+ Sbjct: 107 LGIDASVAA----QAEYAIEAADACLFVVDATVGATDTDEAVVKLLRRAGKPVVLAANKV 162 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D + + + ++SL E +S+ H GT +L + + K P P + N Sbjct: 163 DGQSGEADAAMLWSLGLGEPFPVSSLHGRGTGDLLDEVLR----KLPEAPEQRFGN---- 214 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 + P RIA++GRPNVGKS+L+N++ +R++ +G TRD Sbjct: 215 -----------------TVGGPRRIALIGRPNVGKSSLLNKVANEDRVVVNELAGTTRDP 257 Query: 242 V-------SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLD 294 V ++W + DTAG+RK + E + ++ +V E ++L+D Sbjct: 258 VDELIELGGVTWKF-------VDTAGIRKKVHLQEGADYYASLRTAAAVEKAEVAVILID 310 Query: 295 ATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSD--KLNLLQDLRTKAIKNLPQIGDIY 352 T QD RI+ +G A+V+A NKWD + + + L +++ T+ + Q+ Sbjct: 311 TTDNISVQDQRIITMAVESGRAIVIAYNKWDELDEERRYYLEREIETE----MQQVAWAP 366 Query: 353 INTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKY 412 +S +TG ++ L+ ++ W+TR+ T LN++L + +P P + R+ + Sbjct: 367 RVNVSAKTGRHMEKLVPAIETALAGWETRVPTGRLNAFLGEIVAAHPHPIRGGKQPRILF 426 Query: 413 ITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 TQ + PP F++F + + Y+R++ RLR F G PI + + Sbjct: 427 GTQAGTKPPRFVLFAS--GFLEAGYRRFIERRLREEFGFEGTPIHISVR 473 >gi|282900427|ref|ZP_06308377.1| Small GTP-binding protein domain protein [Cylindrospermopsis raciborskii CS-505] gi|281194740|gb|EFA69687.1| Small GTP-binding protein domain protein [Cylindrospermopsis raciborskii CS-505] Length = 453 Score = 221 bits (564), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 137/467 (29%), Positives = 231/467 (49%), Gaps = 41/467 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKST NRL + A+V + PG+TRDR Y A F +VDT G+ Sbjct: 6 VAIIGRPNVGKSTFVNRLAGDQTAIVHDEPGVTRDRTYRPAFWQNREFLVVDTGGLVFND 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM--- 121 + + Q A++EA +F++D + G+TP D I +LR++ +P ++ NK Sbjct: 66 DTEFLPLIRQQAITALSEACAAIFVVDGQTGLTPADEEIAEWLRQQPVPTLLAVNKCESP 125 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D I Q + E + L E ISA H GT +L + + Q +E + N Sbjct: 126 DQGIIQAS--EFWELGLGEPYPISAIHGSGTGDLLDDLIQYIPQ---------VEELQEN 174 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 E +++A+VGRPNVGKS+L+N +G R + SG TRD+ Sbjct: 175 TE--------------------VKVAIVGRPNVGKSSLLNAFVGEERAIVSPISGTTRDT 214 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 + + + DTAG+RK + E ++ ++ +++R + +++LDA + Sbjct: 215 IDTLIEREGQAYRLIDTAGIRKKKHVEYGTEFFSINRAFKAIRRADVVLLVLDALDGVTE 274 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRT--KAIKNLPQIGD-IYINTISG 358 QD ++ + G A ++ +NKWD+V + D +A + + D I+++ I+G Sbjct: 275 QDQKLAGRIVEDGRACIIVVNKWDVVEKDSYTIYDHEKSLEARLHFTEWADTIFVSAITG 334 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWL-QKTQLQNPPPTIFNRYNRLKYITQIQ 417 + E + DL+ E + K R++TS +N L +PP + + ++ Y TQ+ Sbjct: 335 QRVEKILDLVNKAAESH---KRRVSTSVVNEVLTDAVSWHSPPASRSGKQGKIYYGTQVS 391 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 S PP+F +F + E+Y+RY+ + R G PIR+ ++S K Sbjct: 392 SQPPTFALFVNDAKRFNENYRRYIERQFRKQLGFEGTPIRILWRSKK 438 >gi|113474219|ref|YP_720280.1| GTP-binding protein EngA [Trichodesmium erythraeum IMS101] gi|123161345|sp|Q119L7|DER_TRIEI RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|110165267|gb|ABG49807.1| small GTP-binding protein [Trichodesmium erythraeum IMS101] Length = 453 Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 141/470 (30%), Positives = 237/470 (50%), Gaps = 47/470 (10%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKST+ NRL + K A+V + PGITRDR Y A F +VDT G+ Sbjct: 6 VAIIGRPNVGKSTIVNRLAESKDAIVHDEPGITRDRTYRNAYWEDREFQVVDTGGLVFDD 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 N + +Q A+ EA + +F++D + G+T D I +LR++ IPI++ NK ++ Sbjct: 66 NTEFLPLIREQAMAALVEASVAIFVVDGQTGLTGGDEEIAQWLRQQTIPILLAVNKCESI 125 Query: 124 --RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 + Q + + L E IS H GT EL + Y E+ E N+ Sbjct: 126 TEGLTQAAMF--WELGLGEPYPISGIHGNGTGELLDDLIT-----YLPTQGEITETNQ-- 176 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 +IA+VGRPNVGKS+L+N +G R + SG TRD+ Sbjct: 177 ----------------------TKIAIVGRPNVGKSSLLNSFIGEKRAIVSPISGTTRDA 214 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 + + DTAG+RK + E + ++ +++R E + ++DA + Sbjct: 215 IDTVVERNGKTYRLIDTAGIRKKKNVEYGAEFFGINRAFKAIRRAEVVMFVIDALDGVTE 274 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVS-DKLNLL---QDLRTKAIKNLPQIGDIYINTIS 357 QD ++ + + G A V+ +NKWD + D + Q++R++ + + I+++ ++ Sbjct: 275 QDQKLANRIIEDGRACVIVVNKWDAIEKDNYTIYTYEQEVRSR-LYFVEWAEMIFVSALT 333 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNR---LKYIT 414 G+ E + +L+ + ++ R+TTS +N L++ N PPT NR R + Y T Sbjct: 334 GKRVEKIINLIDNAA---NEYQRRVTTSVINEVLEEAISWNSPPT--NRQGRQGKIYYGT 388 Query: 415 QIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 Q+ S PP+ +F P + PE+Y+RY+ ++ R + +G PIR+ ++ K Sbjct: 389 QVTSKPPTIALFVNDPKRFPENYRRYIQSQFRQHLGFTGTPIRLLWRGKK 438 >gi|182439534|ref|YP_001827253.1| GTP-binding protein EngA [Streptomyces griseus subsp. griseus NBRC 13350] gi|178468050|dbj|BAG22570.1| putative GTP-binding protein [Streptomyces griseus subsp. griseus NBRC 13350] Length = 489 Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 138/462 (29%), Positives = 234/462 (50%), Gaps = 40/462 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD-- 62 +A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ +A G F +VDT G Sbjct: 54 LAVVGRPNVGKSTLVNRIIGRREAVVQDKPGVTRDRVSYEAEWAGRRFKVVDTGGWEQDV 113 Query: 63 -GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 G + S+A Q E AI A ++F++DS G T D A+ LR+ P+++ +NK+ Sbjct: 114 LGLDASVAAQ----AEYAIETADAVVFVVDSTVGATDTDEAVVKLLRRAGKPVVLCANKV 169 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D + + + ++SL E +S+ H GT ++ + + P+ P + Sbjct: 170 DGQSGEADATALWSLGLGEPYPVSSLHGRGTGDMLDAVLEAL----PDAPAQKFGTA--- 222 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 + P RIA++GRPNVGKS+L+N++ G +R++ +G TRD Sbjct: 223 ------------------LGGPRRIALIGRPNVGKSSLLNKVAGEDRVVVNELAGTTRDP 264 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 V N + DTAG+R+ + E + ++ +V E +VL+D++ Sbjct: 265 VDELINLGGITWKFIDTAGIRRRVHLQEGADYYASLRTAAAVEKAEVAVVLIDSSESISV 324 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVSD--KLNLLQDLRTKAIKNLPQIGDIYINTISGR 359 QD RI+ G A+V+A NKWD + + + L +++ T+ L QI +S Sbjct: 325 QDQRIITMAVEAGRALVVAFNKWDTLDEERRYYLEREIETE----LAQISWAPRVNVSAV 380 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 TG ++ L+ ++ + W+TR+ T LN++L + +P P + R+ + TQ + Sbjct: 381 TGRHMEKLVPAIETAIEGWETRVPTGRLNAFLGEIVASHPHPIRGGKQPRILFGTQAGTK 440 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 PP F++F + + Y+R++ RLR F G PI + + Sbjct: 441 PPRFVLFAS--GFLEHGYRRFVERRLREEFGFEGTPIHISVR 480 >gi|33239840|ref|NP_874782.1| GTP-binding protein EngA [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|41017014|sp|Q7VDI8|DER_PROMA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|33237366|gb|AAP99434.1| Predicted GTPase [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 456 Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 133/468 (28%), Positives = 227/468 (48%), Gaps = 30/468 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKSTL NRL + + A+V + PG+TRDR Y F +VDT G+ Sbjct: 6 VAIIGRPNVGKSTLVNRLCQSREAIVHDQPGVTRDRSYQDGFWGDREFKLVDTGGLVFDD 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 ++ +Q LA++EA + L ++D + G+T D I ++LR I++ NK ++ Sbjct: 66 ETEFLPEIREQANLALSEASIALLIVDGQQGLTAADEVIAAWLRHSKCEILLAVNKCESV 125 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + E + L E +SA H GT EL + I Sbjct: 126 ELGLSMAGEFWRLGLGEPYPVSAIHGAGTGELLDRLISIL-------------------- 165 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 PKE I E +P+++A+VGRPNVGKS+L+N + G R + + G TRD++ Sbjct: 166 PPKELIKDE--------EEPIQVAIVGRPNVGKSSLLNAICGEKRAIVSAIRGTTRDTID 217 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 S + ++ DTAG+R+ + E + +S +++ + ++++DA +QD Sbjct: 218 TSIVREGKLWKLIDTAGIRRRKSVNYGPEFFGINRSFKAIERSDVCVLVIDALDGVTEQD 277 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 R+ + G A ++ +NKWD V + + + L + + S TG+ Sbjct: 278 QRLAGRIEEEGRACLVVVNKWDAVEKDTYTMPLMEKELRSKLYFLDWAQMLFTSALTGQR 337 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKT-QLQNPPPTIFNRYNRLKYITQIQSSPPS 422 +D + + + R++TS +N + ++PP + R R+ Y TQ+ SSPPS Sbjct: 338 IDPIFSCASLAVEQHRRRVSTSVVNEVVYDALSWRSPPTSRGGRQGRIYYATQVASSPPS 397 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 F +F P +SY+RYL +LR G P+++ ++ + ++K Sbjct: 398 FTLFVNEPKLFGDSYRRYLERQLREGLGFEGTPLKLFWRGKQKREVEK 445 >gi|119357805|ref|YP_912449.1| GTP-binding protein EngA [Chlorobium phaeobacteroides DSM 266] gi|166224325|sp|A1BHZ8|DER_CHLPD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|119355154|gb|ABL66025.1| small GTP-binding protein [Chlorobium phaeobacteroides DSM 266] Length = 437 Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 142/459 (30%), Positives = 236/459 (51%), Gaps = 32/459 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA-DG 63 IAIVG PNVGKS LFNR++++K A+V + PG+TRDR G F ++DT G +G Sbjct: 5 IAIVGRPNVGKSMLFNRILREKSAIVDSTPGVTRDRHISPGEWQGKQFLLMDTGGYCPEG 64 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRK--KNIPIIIVSNKM 121 S+A M +QT +AI +A +ILFL D ++G+T D I+ L++ ++ I NK+ Sbjct: 65 DVISMA--MLEQTLMAIRDADIILFLADVRSGLTYDDLEISKLLQRTFQHKQIFFAVNKV 122 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 +T + S F + +SA G +EL + P +++E + Sbjct: 123 ETPQLSIDAESFVSTGFTKPYFVSARDGSGVAELLDDML----DSLPVQEKQLVEKDL-- 176 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 P +AVVGRPNVGKS+ +N LLG NRL+ G TRD+ Sbjct: 177 ---------------------PTNLAVVGRPNVGKSSFVNALLGANRLIVSDIPGTTRDA 215 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 + + K + DTAG+RK ++I +E + ++ +++ C+ +V++DA E Sbjct: 216 IDSRFTRKKQDFVLIDTAGLRKRTKIDAGIEYYSSLRTDKAIERCDVALVMIDARTGIEN 275 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTG 361 QD++I++ V+L +NKWD+V + ++ + I + IS T Sbjct: 276 QDMKIINMAVERKRGVLLLINKWDLVEKDSKTSAHYEKEVRSHMGNLAYIPLLFISALTK 335 Query: 362 EGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 + L + + EI++ +ITTS LN +L+ + P T + ++KY+TQI++ P Sbjct: 336 KNLYRAIDTAQEISENRSRKITTSALNRFLEVALAEKHPSTKSGKELKIKYMTQIEAPWP 395 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCF 460 F FC P + +++++L N+LR +F L G+ + + F Sbjct: 396 VFAFFCNDPELLQTNFRKFLENKLREHFKLEGVTVSLRF 434 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 4/105 (3%) Query: 202 KPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGM 261 KPL IA+VGRPNVGKS L NR+L + S G+TRD W+ + DT G Sbjct: 2 KPL-IAIVGRPNVGKSMLFNRILREKSAIVDSTPGVTRDRHISPGEWQGKQFLLMDTGGY 60 Query: 262 RKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRI 306 + + +++++ ++R + + L D DL I Sbjct: 61 CPEGDV---ISMAMLEQTLMAIRDADIILFLADVRSGLTYDDLEI 102 >gi|282864448|ref|ZP_06273504.1| small GTP-binding protein [Streptomyces sp. ACTE] gi|282560935|gb|EFB66481.1| small GTP-binding protein [Streptomyces sp. ACTE] Length = 489 Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 137/469 (29%), Positives = 237/469 (50%), Gaps = 54/469 (11%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD-- 62 +A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ +A G F +VDT G Sbjct: 54 LAVVGRPNVGKSTLVNRIIGRREAVVQDKPGVTRDRVSYEAEWAGRRFKVVDTGGWEQDV 113 Query: 63 -GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 G + S+A Q E AI A ++F++D+ G T D A+ LR+ P+++ +NK+ Sbjct: 114 LGLDASVAA----QAEYAIETADAVVFVVDATVGATDTDEAVVKLLRRAGKPVVLCANKV 169 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D + + + ++SL E +S+ H GT ++ + + Sbjct: 170 DGQSGEADATALWSLGLGEPHPVSSLHGRGTGDMLDAVLEALP----------------- 212 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 E+P + + + P RIA++GRPNVGKS+L+N++ G +R++ + +G TRD Sbjct: 213 -EAPAQTFGT-------ALGGPRRIALIGRPNVGKSSLLNKVAGEDRVVVNALAGTTRDP 264 Query: 242 V-------SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLD 294 V I+W + DTAG+R+ + E + ++ +V E ++L+D Sbjct: 265 VDELIQLGGITWKF-------IDTAGIRRRVHLQEGADYYASLRTAAAVEKAEVAVILID 317 Query: 295 ATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSD--KLNLLQDLRTKAIKNLPQIGDIY 352 A+ QD RI+ + G A+V+A NKWD + + + L +++ T+ L QI Sbjct: 318 ASESISVQDQRIITMAVDAGRAIVVAFNKWDTLDEERRYYLEREIETE----LAQIAWAP 373 Query: 353 INTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKY 412 +S TG ++ L+ ++ W+TR+ T LN++L + +P P + R+ + Sbjct: 374 RVNVSAVTGRHMEKLVPAIETAIDGWETRVPTGRLNAFLGEIVASHPHPVRGGKQPRILF 433 Query: 413 ITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 TQ PP F++F + + Y+R++ RLR F G P+ + + Sbjct: 434 GTQAGIKPPRFVLFAS--GFLEHGYRRFVERRLREEFGFEGTPLHISVR 480 >gi|213692049|ref|YP_002322635.1| small GTP-binding protein [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213523510|gb|ACJ52257.1| small GTP-binding protein [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320458161|dbj|BAJ68782.1| GTP-binding protein [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 709 Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 139/462 (30%), Positives = 221/462 (47%), Gaps = 38/462 (8%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + +AIVG PNVGKS+L NR++ ++ AVV + PG+TRDR+ A G F +VDT G Sbjct: 272 VGVLAIVGRPNVGKSSLVNRILGRRAAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGW- 330 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 + I + Q ++A+ A ++F++D + G+T D I LR PI++ NK+ Sbjct: 331 EADVEGIESAIASQAQVAVTLADAVVFVVDGQVGMTTTDERIVKMLRAAGKPIVLAVNKI 390 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D + ++ E + L E ISA H G +L V KQ Sbjct: 391 DDQASEYLAAEFWKLGLGEPYSISAMHGRGVGDLLDVALDKLKQ---------------- 434 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 +E S S R+A+VGRPNVGKS+L+N+L R + +G TRD Sbjct: 435 ---------AEKTSGYLTPSGLRRVALVGRPNVGKSSLLNQLAREERAVVNDLAGTTRDP 485 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 V N DTAG+++ E + ++ ++ CE ++L DA+ P Sbjct: 486 VDEIVNIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERCELALILFDASQPVSD 545 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVSD----KLNLLQDLRTKAIKNLPQIGDIYINTIS 357 QDL+++ + + G A+VL NKWD + + +L L + + ++ +S Sbjct: 546 QDLKVMSTAVDAGRAIVLVFNKWDAMDEFDKQRLERLWNTEFDRVMWAERV------NLS 599 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 +TG + L ++ + + W RI T LN++L K Q +P P + R+ + TQ Sbjct: 600 AKTGWHTNRLTRAMDKALESWDQRIPTGKLNAFLGKIQAAHPHPLRGGKQPRILFATQAS 659 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 + PP F+IF T + Y+RY+ LR F G PI++ Sbjct: 660 TRPPRFVIFAT--GFLEHGYRRYIERSLREEFGFEGTPIQIS 699 >gi|262091771|gb|ACY25359.1| GTP-binding protein Era [uncultured actinobacterium] Length = 653 Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 136/458 (29%), Positives = 232/458 (50%), Gaps = 35/458 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKSTL NR + ++ A+V + PG+TRDR+ + G F I+DT G + K Sbjct: 223 VAILGRPNVGKSTLINRFLGRREAIVEDTPGVTRDRVQYECEWGGRRFIIMDTGGW-EAK 281 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I+ Q++ +ELA+ EA ++ F++D++ G D + LRK P I++ NK+D Sbjct: 282 PDGISVQVSAGSELAMQEADVLAFVVDAQVGALDEDDILVQHLRKAKKPTILIGNKVDGE 341 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + ++SL E +SA H G+ +L I + + +N++ Sbjct: 342 REEAEAHGLWSLGLGEPRFVSALHGRGSGDLLDHIVAVLPEV----------GRAQNQDG 391 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 + ++A++GRPNVGKS+L N + G + + +G TRD V Sbjct: 392 YR------------------KVALIGRPNVGKSSLFNAIAGESLSIVDDAAGTTRDPVDS 433 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 ++ DTAG++K + + ++ ++ CE +V+LDA+ P +QDL Sbjct: 434 LLSFGGSTWRFIDTAGLKKRANQDSGTDYYASLRTATALERCEVAVVVLDASEPITEQDL 493 Query: 305 RIVDSVFNTGHAVVLALNKWDMV-SDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 R++ V G A+V+ +NKWD+V D+ N L + ++L Q+ I+ +TG Sbjct: 494 RVITMVEEAGKAMVIVMNKWDLVDEDRRNQLD---REIDRHLDQVEWAQRVNIAAKTGWH 550 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 D L ++ W+ R+ T+ LNS+L PPP + ++ Y TQ +PP F Sbjct: 551 RDRLAPALRTALDSWERRVPTAKLNSFLGALIGATPPPVRGGKQPKVYYATQAGIAPPKF 610 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 ++F + I SY+R++ RLR F G P+++ + Sbjct: 611 VVFSS--GWIEASYRRFIERRLREEFKFPGTPVQVAIR 646 >gi|118618580|ref|YP_906912.1| GTP-binding protein EngA [Mycobacterium ulcerans Agy99] gi|166225828|sp|A0PSX2|DER_MYCUA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|118570690|gb|ABL05441.1| GTP-binding protein, EngA [Mycobacterium ulcerans Agy99] Length = 469 Score = 221 bits (562), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 148/455 (32%), Positives = 225/455 (49%), Gaps = 34/455 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA-DG 63 +AIVG PNVGKSTL NR++ ++ AVV + PG+TRDR+ A+ NG F + DT G D Sbjct: 32 LAIVGRPNVGKSTLVNRILGRREAVVQDIPGVTRDRVSYDALWNGRRFVVQDTGGWEPDA 91 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 K + + + +Q +A+ A ++ ++D+ G T D A L + P+ + +NK+D+ Sbjct: 92 KG--LQQLVAEQASVAMRTADAVVLVVDATVGATTADEAAARILLRSGKPVFLAANKVDS 149 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 A+ + ++S+ E ISA H G + L + K K P Sbjct: 150 DKAEADAATLWSMGLGEPHAISAMHGRGVANLLDTVLK----KLP--------------- 190 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 E SV P R+A+VG+PNVGKS+L+N+L G R + +G T D V Sbjct: 191 --------EVAESVSAGGGPRRVALVGKPNVGKSSLLNKLAGDERSVVHDVAGTTVDPVD 242 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 DTAG+R+ E ++ ++ E ++L+DA+ P +QD Sbjct: 243 SLIELGGKVWRFVDTAGLRRKVGQASGHEFYASVRTRGAIDAAEVVVLLIDASQPLTEQD 302 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 LR++ V G AVVLA NKWD+V + L D + L QI IS +TG Sbjct: 303 LRVLSMVIEAGRAVVLAYNKWDLVDEDRRDLLDREID--RELVQIRWAQRVNISAKTGRA 360 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 + L+ ++ W TRI T LNSW+++ PPP + R+ + TQ + PP+F Sbjct: 361 VQKLVPAMETALASWDTRIPTGPLNSWIKEVVAATPPPVRGGKQPRILFATQATARPPTF 420 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 ++F T + Y+R+L RLR F G PIR+ Sbjct: 421 VLFTT--GFLEAGYRRFLERRLRETFGFEGSPIRI 453 >gi|225156498|ref|ZP_03724833.1| small GTP-binding protein [Opitutaceae bacterium TAV2] gi|224802927|gb|EEG21174.1| small GTP-binding protein [Opitutaceae bacterium TAV2] Length = 526 Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 142/480 (29%), Positives = 236/480 (49%), Gaps = 34/480 (7%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M T+AIVG PNVGKS LFNRL ++++++V + PG+TRD + Q I +G + ++DT G+ Sbjct: 1 MSRTVAIVGRPNVGKSRLFNRLARRRISIVHDQPGVTRDVISTQ-IASGA-YTLLDTGGL 58 Query: 61 A--DGKNCS-IAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIV 117 G+ + + Q + AI+ + LILF++D GIT D I LRK +++V Sbjct: 59 GLKGGETTAELTAASERQVDFAIDTSDLILFVVDGLDGITALDSRIAQKLRKSKKEVLLV 118 Query: 118 SNKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 NK D + + E Y L + V ISAEH G EL + I P Sbjct: 119 VNKADFNDDKVDLAEAYRLGLGDPVRISAEHGNGEPELRTAILDRLGPPPPADDANTTTI 178 Query: 178 NKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGI 237 + +P + K + PL + +GRPNVGKS+L NRLL +RL+ + G Sbjct: 179 TYDEDGNPVTKF-----ENAKTSADPLCVCFIGRPNVGKSSLGNRLLQSDRLIVSNVPGT 233 Query: 238 TRDSVSISWNW-----KNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVL 292 TRD+V + + + K HP + D G++ +++ +E + +S+ +++ + ++ Sbjct: 234 TRDAVELPFTFRGREHKEHPFLLIDIGGIKAATKLASPVEYFSRLRSLDAIQRADVVFLV 293 Query: 293 LDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLL---------QDLRTKAIK 343 LDA +QD I +++ +NKWD+V + +D R K K Sbjct: 294 LDALDGVTQQDKAIAGEAVKERKPIIVVVNKWDLVHESFAKFGGLPGYKNERDYREKYEK 353 Query: 344 NL-------PQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQL 396 L P I+++ + +D ++ + ++I+++ ++ T+ LN +Q Sbjct: 354 ALFDCLFFTPGSPVIFVSALGNLE---VDRMLNAAVKIHRVLDRKLPTAKLNQIIQHLCE 410 Query: 397 QNPPPTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 + PPP+I R R Y TQ + P +FC K+PE+Y+RYL + F L G P+ Sbjct: 411 RTPPPSIAGRRFRAYYCTQTGTRPFRIKLFCNREEKLPETYRRYLEAGIVEAFDLGGCPV 470 >gi|307718980|ref|YP_003874512.1| GTP-binding protein EngA [Spirochaeta thermophila DSM 6192] gi|306532705|gb|ADN02239.1| GTP-binding protein EngA [Spirochaeta thermophila DSM 6192] Length = 450 Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 142/452 (31%), Positives = 219/452 (48%), Gaps = 27/452 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + IVG PNVGKSTLFNRL+ ++ A+ PG+TRD + + G +VDT GI + Sbjct: 20 VVIVGRPNVGKSTLFNRLIGRRKAITHPRPGVTRDAVEETWELGGGRVLLVDTGGITSER 79 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + ++ ++ A ++L ++D + P D + LR +I+V NK+D Sbjct: 80 GGIFEPLVRERALREVDRADVLLLVLDVTE-LVPEDEELLELLRPYKERLILVVNKVDNE 138 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + +SL F + SAEH G EL I +R Sbjct: 139 AREEMAWNFFSLGFDTVCFTSAEHGRGIDELEQEI-------------------ERRLVL 179 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P+E + + +A++G+PN GKSTL+N LLG R L G TRD + Sbjct: 180 PEEGGDAPSAPEID-------VAILGKPNTGKSTLLNTLLGEERALVSDAPGTTRDLLEG 232 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + ++ I DTAG+R+ SRI + LE +V++S++ + +L+DA +QD Sbjct: 233 RFQYRGRWFRIVDTAGIRRRSRIEDDLEFYSVRRSLKVIEEAHVVFLLIDAQEGLTEQDK 292 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 +I G V+L LNKWD ++ N Q ++ + P + I IS R GEG+ Sbjct: 293 KIAAVAQRRGRGVILVLNKWDALTPVPNQFQAMKARIRFFFPHMDYAPIVKISARRGEGI 352 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 D L+ + L + R+ T LN L + + + PPP+ R +++Y+TQ+ S P FL Sbjct: 353 DKLLDTALMLRDELGKRVETGPLNRALNRWKEEVPPPSRKGRRYKVRYMTQVSSMPVRFL 412 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 +F P SY YL NR+R F S IPI Sbjct: 413 LFVNRREGFPSSYLSYLENRVRKEFGFSHIPI 444 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 35/106 (33%), Positives = 60/106 (56%), Gaps = 2/106 (1%) Query: 191 SEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKN 250 +EG+ +V + R+ +VGRPNVGKSTL NRL+G + +T + G+TRD+V +W Sbjct: 5 TEGRRTVGVEFRLPRVVIVGRPNVGKSTLFNRLIGRRKAITHPRPGVTRDAVEETWELGG 64 Query: 251 HPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDAT 296 + + DT G+ S E +++++ V + +++LD T Sbjct: 65 GRVLLVDTGGI--TSERGGIFEPLVRERALREVDRADVLLLVLDVT 108 >gi|94971659|ref|YP_593707.1| GTP-binding protein EngA [Candidatus Koribacter versatilis Ellin345] gi|94553709|gb|ABF43633.1| Small GTP-binding protein [Candidatus Koribacter versatilis Ellin345] Length = 511 Score = 220 bits (561), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 142/489 (29%), Positives = 244/489 (49%), Gaps = 37/489 (7%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 ++ IAIVG PNVGKSTLFNRLV ++ A+VG+ PGITRDRLYG + G +VDT GI Sbjct: 13 LVGMIAIVGRPNVGKSTLFNRLVGQRRAIVGDEPGITRDRLYGYSEWAGKRLRVVDTGGI 72 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 I ++ Q ++A+ EA +I+ ++D++ + D + L++ P+I+ NK Sbjct: 73 VPDDEALIPAEIFRQAKVALEEADVIVMVVDARTELASPDIDLARLLQRTGKPLILAVNK 132 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL-HSVIFKIFKQKYPNHPLE------ 173 +D + + L + +V ISAEH G +EL ++ +I ++ + +E Sbjct: 133 IDDPKLESYVEDFRRLGIRTMVPISAEHSTGVAELLEEILERIPEKAAGDKTVEDKNAGA 192 Query: 174 --MIENNKRNEE-------SPKENITSE--------GKSSVKNISKPLRIAVVGRPNVGK 216 + N K E P ++ SE + ++ ++IA++GRPNVGK Sbjct: 193 RPALRNAKTAAEPADTFDDQPSVDLDSEIDDAPHEGAEQPDSELTPEIKIAIIGRPNVGK 252 Query: 217 STLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTV 276 ST++NRL G R + +G TRD+V DTAG+R+ + E+ +V Sbjct: 253 STMLNRLTGTARAIVSPIAGTTRDAVDEVVERDGQIFRFIDTAGIRRKGKTRLMAEKLSV 312 Query: 277 KKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMV--------- 327 + + + + +VL+DAT D I G +V++ +NKWD+V Sbjct: 313 VMARKHLEAADLALVLIDATEGVTAIDATIAGYAHEAGRSVIVVINKWDLVTINRADGKP 372 Query: 328 SDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYL 387 + K+++ ++ + +K L ++ S TG G + ++ + + + RI T + Sbjct: 373 AAKVDIFEEQVRRHLKFLNYAPIVF---ASAETGYGSGKIYEAIELVARERRKRIATGEM 429 Query: 388 NSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRI 447 N +L+ + +++ R+ Y+TQ SPP+F++F + SY+R+L N++R Sbjct: 430 NRFLKHVDFER-AGVPYSQRVRILYMTQAAVSPPTFILFTDRATPLHFSYRRFLENQIRD 488 Query: 448 NFSLSGIPI 456 F G PI Sbjct: 489 AFQFVGTPI 497 >gi|113954294|ref|YP_729814.1| GTP-binding protein EngA [Synechococcus sp. CC9311] gi|123031842|sp|Q0ICK8|DER_SYNS3 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|113881645|gb|ABI46603.1| GTP-binding protein EngA [Synechococcus sp. CC9311] Length = 455 Score = 220 bits (561), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 131/468 (27%), Positives = 228/468 (48%), Gaps = 30/468 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKSTL NRL + + A+V + PG+TRDR Y F +VDT G+ Sbjct: 6 VAIIGRPNVGKSTLVNRLCRSREAIVHDQPGVTRDRTYQDGYWGDREFKVVDTGGLVFDD 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + ++ +Q LA+ EA + L ++D + G+T D +I +LR +N ++ NK ++ Sbjct: 66 DSEFLPEIREQASLALAEASVALVIVDGQQGLTAADESIAEWLRTQNCKTLLAVNKCESP 125 Query: 125 IAQRNF-YEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 E + L E ISA H GT+EL + K +EE Sbjct: 126 EQGLGMAAEFWRLGLGEPHPISAIHGAGTAELLDQVLTFLPPK--------------DEE 171 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 S +E +P++++++GRPNVGKS+L+N + G R + G TRD++ Sbjct: 172 SDEE--------------EPIQLSIIGRPNVGKSSLLNSICGETRAIVSPIRGTTRDTID 217 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 +N + DTAG+R+ + E + +S +++ + ++++DA +QD Sbjct: 218 TRIERENRRWRLIDTAGIRRRRSVNYGPEFFGINRSFKAIERSDVCVLVIDALDGVTEQD 277 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 R+ + G A V+ +NKWD V + + + + L + + S TG+ Sbjct: 278 QRLAGRIEEDGRACVVVVNKWDAVEKDSHTMTAMEKELRAKLYFLDWAPMLFTSALTGQR 337 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKT-QLQNPPPTIFNRYNRLKYITQIQSSPPS 422 +D + + + R++TS +N L++ ++PP T R RL Y TQ+ S PPS Sbjct: 338 VDSIFALAALAVEQHRRRVSTSVVNEVLKEALSWRSPPTTRGGRQGRLYYGTQVASRPPS 397 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 F +F P ++Y+RY+ ++R G P+++ ++ + +K Sbjct: 398 FTLFVNEPKLFGDTYRRYVERQIREGLGFDGTPVKLFWRGKQQRDAEK 445 >gi|296454185|ref|YP_003661328.1| small GTP-binding protein [Bifidobacterium longum subsp. longum JDM301] gi|296183616|gb|ADH00498.1| small GTP-binding protein [Bifidobacterium longum subsp. longum JDM301] Length = 709 Score = 220 bits (560), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 137/462 (29%), Positives = 221/462 (47%), Gaps = 38/462 (8%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + +A+VG PNVGKS+L NR++ ++ AVV + PG+TRDR+ A G F +VDT G Sbjct: 272 VGVLAVVGRPNVGKSSLVNRILGRRAAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGW- 330 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 + I + Q ++A+ A ++F++D + G+T D I LR P+++ NK+ Sbjct: 331 EADVEGIESAIASQAQIAVTLADAVVFVVDGQVGMTTTDERIVKMLRAAGKPVVLAVNKI 390 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D + ++ E + L E ISA H G +L V KQ Sbjct: 391 DDQASEYLAAEFWKLGLGEPYSISAMHGRGVGDLLDVALDKLKQ---------------- 434 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 +E S S R+A+VGRPNVGKS+L+N+L R + +G TRD Sbjct: 435 ---------AEKTSGYLTPSGLRRVALVGRPNVGKSSLLNQLAREERAVVNDLAGTTRDP 485 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 V N DTAG+++ E + ++ ++ CE ++L DA+ P Sbjct: 486 VDEIVNIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERCELALILFDASQPVSD 545 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVSD----KLNLLQDLRTKAIKNLPQIGDIYINTIS 357 QDL+++ + + G A+VL NKWD + + +L L + + ++ +S Sbjct: 546 QDLKVMSTAVDAGRAIVLVFNKWDAMDEFDKQRLERLWNTEFDRVMWAERV------NLS 599 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 +TG + L ++ + + W RI T LN++L K Q +P P + R+ + TQ Sbjct: 600 AKTGWHTNRLTRAMDKALESWDQRIPTGKLNAFLGKIQAAHPHPLRGGKQPRILFATQAS 659 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 + PP F+IF T + Y+RY+ LR F G PI++ Sbjct: 660 TRPPRFVIFAT--GFLEHGYRRYIERSLREEFGFEGTPIQIS 699 >gi|217077884|ref|YP_002335602.1| GTP-binding protein EngA [Thermosipho africanus TCF52B] gi|226741195|sp|B7IE34|DER_THEAB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|217037739|gb|ACJ76261.1| GTP-binding protein EngA [Thermosipho africanus TCF52B] Length = 439 Score = 220 bits (560), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 156/469 (33%), Positives = 240/469 (51%), Gaps = 44/469 (9%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+ IVG NVGKSTLFN+L+ K ++V + G+TRD + G+ FNIVDT GI + Sbjct: 3 TVLIVGKSNVGKSTLFNKLIGYKKSIVDDKEGVTRDAVSGRVSYYSKTFNIVDTGGIFEN 62 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 I + D T +NEA LILF+ID+K GIT D+ + +RK N +I+VSNK ++ Sbjct: 63 PEDDIINKSKDLTLKMLNEADLILFVIDAKNGITSEDYYLADIIRKSNNDVILVSNKSES 122 Query: 124 -RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 R Q N +IY L F + + +SAE L I + + K Sbjct: 123 ERRVQNNLPDIYKLGFGDPIFVSAEQGKNIDTLIERIVNVLESK---------------G 167 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 S +EN+ E +S + R++ +GRPN GKSTL N +L R+L G TRDSV Sbjct: 168 LSLEENLKEESQSII-------RVSFIGRPNAGKSTLFNSILNKERVLVTPIPGTTRDSV 220 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRIT-ESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 DTAG+R+ S++ +SL+ + +S++S+ + ++L+DA Sbjct: 221 DELVTINGRKYLFVDTAGLRRKSKVDYKSLDMYSNVRSIKSIENSDVVVILIDAIEGITH 280 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGD--IYINT---- 355 QD RI N G A ++A NK D L+++ + K + + Q + +IN Sbjct: 281 QDQRIAGIAENRGKATIVAFNKID-------LIKNFKYKKEEFIDQFNEKLYFINYSPLI 333 Query: 356 -ISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYIT 414 +S +G+D+L+ ++ E K R+ TS +NS +Q+ PPP ++ Y T Sbjct: 334 FLSAINKKGIDNLINAIDEAYKSLHYRVQTSAVNSAIQRMMAFTPPPKGL----KILYGT 389 Query: 415 QIQSSPPSFLIFCTFPNKIPESYKRYLINRLRIN-FSLSGIPIRMCFQS 462 Q+ PP+FL F T K+PE Y+ ++ +R N + G PI + F+S Sbjct: 390 QVDIRPPTFLFF-TNGKKVPEFYQNHIRKTIRENIYPFVGAPIFLKFKS 437 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 49/175 (28%), Positives = 85/175 (48%), Gaps = 12/175 (6%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 I ++ +G PN GKSTLFN ++ K+ +V PG TRD + ING + VDTAG+ Sbjct: 181 IIRVSFIGRPNAGKSTLFNSILNKERVLVTPIPGTTRDSVDELVTINGRKYLFVDTAGLR 240 Query: 62 DGKNC---SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVS 118 S+ N ++ +I + +++ LID+ GIT D I + I+ Sbjct: 241 RKSKVDYKSLDMYSNVRSIKSIENSDVVVILIDAIEGITHQDQRIAGIAENRGKATIVAF 300 Query: 119 NKMDT----RIAQRNFYE-----IYSLDFKEIVEISAEHDLGTSELHSVIFKIFK 164 NK+D + + F + +Y +++ ++ +SA + G L + I + +K Sbjct: 301 NKIDLIKNFKYKKEEFIDQFNEKLYFINYSPLIFLSAINKKGIDNLINAIDEAYK 355 >gi|222100021|ref|YP_002534589.1| GTP-binding protein engA [Thermotoga neapolitana DSM 4359] gi|254783174|sp|B9K8E0|DER_THENN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|221572411|gb|ACM23223.1| GTP-binding protein engA [Thermotoga neapolitana DSM 4359] Length = 439 Score = 220 bits (560), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 155/469 (33%), Positives = 235/469 (50%), Gaps = 40/469 (8%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+ IVG PNVGKSTLFN+LV+K+ A+V + G+TRD + G F +VDT G+ D Sbjct: 3 TVLIVGKPNVGKSTLFNKLVRKRKAIVEDEEGVTRDPVQDTVEWYGKTFRLVDTCGVFDN 62 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 I+K+M + T I EA L+LF++D K GIT D ++ FLRK + +I+V+NK + Sbjct: 63 PQDVISKKMKEVTLNMIREADLVLFVVDGKNGITKEDESLADFLRKSGVDVILVANKTEN 122 Query: 124 RIAQRNFY-----EIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 QR F E+Y L F + + +SAEH + L I QK L++ Sbjct: 123 ---QRRFEREIKPELYRLGFGDPIPVSAEHSINLDTLMEKII----QKLEEKGLDL---- 171 Query: 179 KRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 E P+ I++ ++IA+VGRPNVGKSTL N +L R L G T Sbjct: 172 ---ETKPE-------------ITEAIKIAIVGRPNVGKSTLFNAILNKERALVSPIPGTT 215 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRIT-ESLEQKTVKKSMQSVRTCETTIVLLDATI 297 RD V DTAG+R+ SRI +++E+ + + ++S+ + +++LDAT Sbjct: 216 RDPVDDEVFIDGKKYIFVDTAGLRRKSRIEPKTVERYSTYRVVESIERADVAVIVLDATQ 275 Query: 298 PFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTIS 357 +QD RI V G A V+ NKWD+V + + + L + + S Sbjct: 276 GITRQDQRIAGLVERKGKASVVVFNKWDLVEHREKRYDEFTKLFREKLYFVDYSPLIFTS 335 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKT-QLQNPPPTIFNRYNRLKYITQI 416 G G++ ++ ++ + T++ +S LNS LQK N P R ++ + Q+ Sbjct: 336 ADKGWGVEKIIDAINLAYSSYTTKVPSSALNSALQKVLAFTNLP-----RGLKIFFGLQV 390 Query: 417 QSSPPSFLIFCTFPNKIPESYKRYLINRLR-INFSLSGIPIRMCFQSSK 464 PP+FL F KI E K +L +R F G PI + F+ S+ Sbjct: 391 DIKPPTFLFFVNNTEKIKEPQKVFLRRLIREYVFPFEGSPIFLKFKKSR 439 >gi|189439326|ref|YP_001954407.1| bifunctional cytidylate kinase/GTP-binding protein [Bifidobacterium longum DJO10A] gi|312132698|ref|YP_004000037.1| cmk [Bifidobacterium longum subsp. longum BBMN68] gi|189427761|gb|ACD97909.1| Cytidylate kinase [Bifidobacterium longum DJO10A] gi|311773657|gb|ADQ03145.1| Cmk [Bifidobacterium longum subsp. longum BBMN68] Length = 709 Score = 220 bits (560), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 137/462 (29%), Positives = 221/462 (47%), Gaps = 38/462 (8%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + +A+VG PNVGKS+L NR++ ++ AVV + PG+TRDR+ A G F +VDT G Sbjct: 272 VGVLAVVGRPNVGKSSLVNRILGRRAAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGW- 330 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 + I + Q ++A+ A ++F++D + G+T D I LR P+++ NK+ Sbjct: 331 EADVEGIESAIASQAQVAVTLADAVVFVVDGQVGMTTTDERIVKMLRAAGKPVVLAVNKI 390 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D + ++ E + L E ISA H G +L V KQ Sbjct: 391 DDQASEYLAAEFWKLGLGEPYSISAMHGRGVGDLLDVALDKLKQ---------------- 434 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 +E S S R+A+VGRPNVGKS+L+N+L R + +G TRD Sbjct: 435 ---------AEKTSGYLTPSGLRRVALVGRPNVGKSSLLNQLAREERAVVNDLAGTTRDP 485 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 V N DTAG+++ E + ++ ++ CE ++L DA+ P Sbjct: 486 VDEIVNIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERCELALILFDASQPVSD 545 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVSD----KLNLLQDLRTKAIKNLPQIGDIYINTIS 357 QDL+++ + + G A+VL NKWD + + +L L + + ++ +S Sbjct: 546 QDLKVMSTAVDAGRAIVLVFNKWDAMDEFDKQRLERLWNTEFDRVMWAERV------NLS 599 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 +TG + L ++ + + W RI T LN++L K Q +P P + R+ + TQ Sbjct: 600 AKTGWHTNRLTRAMDKALESWDQRIPTGKLNAFLGKIQAAHPHPLRGGKQPRILFATQAS 659 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 + PP F+IF T + Y+RY+ LR F G PI++ Sbjct: 660 TRPPRFVIFAT--GFLEHGYRRYIERSLREEFGFEGTPIQIS 699 >gi|254393241|ref|ZP_05008394.1| GTP-binding protein engA [Streptomyces clavuligerus ATCC 27064] gi|294811807|ref|ZP_06770450.1| GTP-binding protein engA [Streptomyces clavuligerus ATCC 27064] gi|197706881|gb|EDY52693.1| GTP-binding protein engA [Streptomyces clavuligerus ATCC 27064] gi|294324406|gb|EFG06049.1| GTP-binding protein engA [Streptomyces clavuligerus ATCC 27064] Length = 490 Score = 220 bits (560), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 142/478 (29%), Positives = 239/478 (50%), Gaps = 54/478 (11%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD-- 62 +A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ +A G F +VDT G Sbjct: 55 LAVVGRPNVGKSTLVNRIIGRREAVVEDKPGVTRDRVTYEAEWAGRRFKVVDTGGWEQDV 114 Query: 63 -GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 G + S+A Q E AI A ++F++D+ G T D A+ LR+ P+++ +NK+ Sbjct: 115 LGIDASVAA----QAEYAIEAADAVVFVVDASVGATDTDEAVVRLLRRAGKPVVLCANKV 170 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D + + ++SL E +SA H GT ++ + + Sbjct: 171 DGPSGEADAAALWSLGLGEPHPVSALHGRGTGDMLDAVLEALP----------------- 213 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 E+P ++ + + P RIA++GRPNVGKS+L+N++ R++ +G TRD Sbjct: 214 -EAPAQSFGT-------AVGGPRRIALIGRPNVGKSSLLNKVAREERVVVNELAGTTRDP 265 Query: 242 V-------SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLD 294 V ++W + DTAG+R+ + E + ++ +V E +VL+D Sbjct: 266 VDELIELGGVTWKF-------VDTAGIRRRVHLQEGADYYASLRTAAAVEKAEVAVVLID 318 Query: 295 ATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSD--KLNLLQDLRTKAIKNLPQIGDIY 352 A+ QD RIV G A+V+A NKWD + + + L +++ T+ L QI Sbjct: 319 ASENISVQDQRIVTMAVEAGRAMVIAFNKWDTLDEERRYYLEREIETE----LGQIAWAP 374 Query: 353 INTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKY 412 +S RTG ++ L+ ++ W+TR+ T LN++L + +P P + R+ + Sbjct: 375 RVNVSARTGRHMEKLVPAIETALAGWETRVPTGRLNAFLGELVAAHPHPIRGGKQPRILF 434 Query: 413 ITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 TQ + PP F++F + + Y+R++ RLR F G PI++ + + KK Sbjct: 435 GTQAGTKPPRFVLFSS--GFLEHGYRRFVERRLREEFGFEGTPIQISVRVREKRGRKK 490 >gi|46191228|ref|ZP_00206719.1| COG1160: Predicted GTPases [Bifidobacterium longum DJO10A] Length = 597 Score = 220 bits (560), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 137/462 (29%), Positives = 221/462 (47%), Gaps = 38/462 (8%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + +A+VG PNVGKS+L NR++ ++ AVV + PG+TRDR+ A G F +VDT G Sbjct: 160 VGVLAVVGRPNVGKSSLVNRILGRRAAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGW- 218 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 + I + Q ++A+ A ++F++D + G+T D I LR P+++ NK+ Sbjct: 219 EADVEGIESAIASQAQVAVTLADAVVFVVDGQVGMTTTDERIVKMLRAAGKPVVLAVNKI 278 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D + ++ E + L E ISA H G +L V KQ Sbjct: 279 DDQASEYLAAEFWKLGLGEPYSISAMHGRGVGDLLDVALDKLKQ---------------- 322 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 +E S S R+A+VGRPNVGKS+L+N+L R + +G TRD Sbjct: 323 ---------AEKTSGYLTPSGLRRVALVGRPNVGKSSLLNQLAREERAVVNDLAGTTRDP 373 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 V N DTAG+++ E + ++ ++ CE ++L DA+ P Sbjct: 374 VDEIVNIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERCELALILFDASQPVSD 433 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVSD----KLNLLQDLRTKAIKNLPQIGDIYINTIS 357 QDL+++ + + G A+VL NKWD + + +L L + + ++ +S Sbjct: 434 QDLKVMSTAVDAGRAIVLVFNKWDAMDEFDKQRLERLWNTEFDRVMWAERV------NLS 487 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 +TG + L ++ + + W RI T LN++L K Q +P P + R+ + TQ Sbjct: 488 AKTGWHTNRLTRAMDKALESWDQRIPTGKLNAFLGKIQAAHPHPLRGGKQPRILFATQAS 547 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 + PP F+IF T + Y+RY+ LR F G PI++ Sbjct: 548 TRPPRFVIFAT--GFLEHGYRRYIERSLREEFGFEGTPIQIS 587 >gi|37999702|sp|Q8G6A8|DER_BIFLO RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|23325955|gb|AAN24555.1| probable GTP binding protein [Bifidobacterium longum NCC2705] Length = 463 Score = 220 bits (560), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 137/462 (29%), Positives = 221/462 (47%), Gaps = 38/462 (8%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + +A+VG PNVGKS+L NR++ ++ AVV + PG+TRDR+ A G F +VDT G Sbjct: 26 VGVLAVVGRPNVGKSSLVNRILGRRAAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGW- 84 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 + I + Q ++A+ A ++F++D + G+T D I LR P+++ NK+ Sbjct: 85 EADVEGIESAIASQAQVAVTLADAVVFVVDGQVGMTTTDERIVKMLRAAGKPVVLAVNKI 144 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D + ++ E + L E ISA H G +L V KQ Sbjct: 145 DDQASEYLAAEFWKLGLGEPYSISAMHGRGVGDLLDVALDKLKQ---------------- 188 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 +E S S R+A+VGRPNVGKS+L+N+L R + +G TRD Sbjct: 189 ---------AEKTSGYLTPSGLRRVALVGRPNVGKSSLLNQLAREERAVVNDLAGTTRDP 239 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 V N DTAG+++ E + ++ ++ CE ++L DA+ P Sbjct: 240 VDEIVNIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERCELALILFDASQPVSD 299 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVSD----KLNLLQDLRTKAIKNLPQIGDIYINTIS 357 QDL+++ + + G A+VL NKWD + + +L L + + ++ +S Sbjct: 300 QDLKVMSTAVDAGRAIVLVFNKWDAMDEFDKQRLERLWNTEFDRVMWAERV------NLS 353 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 +TG + L ++ + + W RI T LN++L K Q +P P + R+ + TQ Sbjct: 354 AKTGWHTNRLTRAMDKALESWDQRIPTGKLNAFLGKIQAAHPHPLRGGKQPRILFATQAS 413 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 + PP F+IF T + Y+RY+ LR F G PI++ Sbjct: 414 TRPPRFVIFAT--GFLEHGYRRYIERSLREEFGFEGTPIQIS 453 >gi|227547248|ref|ZP_03977297.1| small GTP-binding protein [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227212207|gb|EEI80103.1| small GTP-binding protein [Bifidobacterium longum subsp. infantis ATCC 55813] Length = 709 Score = 220 bits (560), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 137/462 (29%), Positives = 221/462 (47%), Gaps = 38/462 (8%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + +A+VG PNVGKS+L NR++ ++ AVV + PG+TRDR+ A G F +VDT G Sbjct: 272 VGVLAVVGRPNVGKSSLVNRILGRRAAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGW- 330 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 + I + Q ++A+ A ++F++D + G+T D I LR P+++ NK+ Sbjct: 331 EADVEGIESAIASQAQVAVTLADAVVFVVDGQVGMTTTDERIVKMLRAAGKPVVLAVNKI 390 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D + ++ E + L E ISA H G +L V KQ Sbjct: 391 DDQASEYLAAEFWKLGLGEPYSISAMHGRGVGDLLDVALDKLKQ---------------- 434 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 +E S S R+A+VGRPNVGKS+L+N+L R + +G TRD Sbjct: 435 ---------AEKTSGYLTPSGLRRVALVGRPNVGKSSLLNQLAREERAVVNDLAGTTRDP 485 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 V N DTAG+++ E + ++ ++ CE ++L DA+ P Sbjct: 486 VDEIVNIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERCELALILFDASQPVSD 545 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVSD----KLNLLQDLRTKAIKNLPQIGDIYINTIS 357 QDL+++ + + G A+VL NKWD + + +L L + + ++ +S Sbjct: 546 QDLKVMSTAVDAGRAIVLVFNKWDAMDEFDKQRLERLWNTEFDRVMWAERV------NLS 599 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 +TG + L ++ + + W RI T LN++L K Q +P P + R+ + TQ Sbjct: 600 AKTGWHTNRLTRAMDKALESWDQRIPTGKLNAFLGKIQAAHPHPLRGGKQPRILFATQAS 659 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 + PP F+IF T + Y+RY+ LR F G PI++ Sbjct: 660 TRPPRFVIFAT--GFLEHGYRRYIERSLREEFGFEGTPIQIS 699 >gi|322691264|ref|YP_004220834.1| GTP-binding protein [Bifidobacterium longum subsp. longum JCM 1217] gi|320456120|dbj|BAJ66742.1| GTP-binding protein [Bifidobacterium longum subsp. longum JCM 1217] Length = 709 Score = 220 bits (560), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 137/462 (29%), Positives = 221/462 (47%), Gaps = 38/462 (8%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + +A+VG PNVGKS+L NR++ ++ AVV + PG+TRDR+ A G F +VDT G Sbjct: 272 VGVLAVVGRPNVGKSSLVNRILGRRAAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGW- 330 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 + I + Q ++A+ A ++F++D + G+T D I LR P+++ NK+ Sbjct: 331 EADVEGIESAIASQAQVAVTLADAVVFVVDGQVGMTTTDERIVKMLRAAGKPVVLAVNKI 390 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D + ++ E + L E ISA H G +L V KQ Sbjct: 391 DDQASEYLAAEFWKLGLGEPYSISAMHGRGVGDLLDVALDKLKQ---------------- 434 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 +E S S R+A+VGRPNVGKS+L+N+L R + +G TRD Sbjct: 435 ---------AEKTSGYLTPSGLRRVALVGRPNVGKSSLLNQLAREERAVVNDLAGTTRDP 485 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 V N DTAG+++ E + ++ ++ CE ++L DA+ P Sbjct: 486 VDEIVNIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERCELALILFDASQPVSD 545 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVSD----KLNLLQDLRTKAIKNLPQIGDIYINTIS 357 QDL+++ + + G A+VL NKWD + + +L L + + ++ +S Sbjct: 546 QDLKVMSTAVDAGRAIVLVFNKWDAMDEFDKQRLERLWNTEFDRVMWAERV------NLS 599 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 +TG + L ++ + + W RI T LN++L K Q +P P + R+ + TQ Sbjct: 600 AKTGWHTNRLTRAMDKALESWDQRIPTGKLNAFLGKIQAAHPHPLRGGKQPRILFATQAS 659 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 + PP F+IF T + Y+RY+ LR F G PI++ Sbjct: 660 TRPPRFVIFAT--GFLEHGYRRYIERSLREEFGFEGTPIQIS 699 >gi|239621484|ref|ZP_04664515.1| bifunctional cytidylate kinase/GTP-binding protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239515945|gb|EEQ55812.1| bifunctional cytidylate kinase/GTP-binding protein [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 698 Score = 220 bits (560), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 137/462 (29%), Positives = 221/462 (47%), Gaps = 38/462 (8%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + +A+VG PNVGKS+L NR++ ++ AVV + PG+TRDR+ A G F +VDT G Sbjct: 261 VGVLAVVGRPNVGKSSLVNRILGRRAAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGW- 319 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 + I + Q ++A+ A ++F++D + G+T D I LR P+++ NK+ Sbjct: 320 EADVEGIESAIASQAQVAVTLADAVVFVVDGQVGMTTTDERIVKMLRAAGKPVVLAVNKI 379 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D + ++ E + L E ISA H G +L V KQ Sbjct: 380 DDQASEYLAAEFWKLGLGEPYSISAMHGRGVGDLLDVALDKLKQ---------------- 423 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 +E S S R+A+VGRPNVGKS+L+N+L R + +G TRD Sbjct: 424 ---------AEKTSGYLTPSGLRRVALVGRPNVGKSSLLNQLAREERAVVNDLAGTTRDP 474 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 V N DTAG+++ E + ++ ++ CE ++L DA+ P Sbjct: 475 VDEIVNIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERCELALILFDASQPVSD 534 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVSD----KLNLLQDLRTKAIKNLPQIGDIYINTIS 357 QDL+++ + + G A+VL NKWD + + +L L + + ++ +S Sbjct: 535 QDLKVMSTAVDAGRAIVLVFNKWDAMDEFDKQRLERLWNTEFDRVMWAERV------NLS 588 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 +TG + L ++ + + W RI T LN++L K Q +P P + R+ + TQ Sbjct: 589 AKTGWHTNRLTRAMDKALESWDQRIPTGKLNAFLGKIQAAHPHPLRGGKQPRILFATQAS 648 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 + PP F+IF T + Y+RY+ LR F G PI++ Sbjct: 649 TRPPRFVIFAT--GFLEHGYRRYIERSLREEFGFEGTPIQIS 688 >gi|161485602|ref|NP_695919.2| bifunctional cytidylate kinase/GTP-binding protein [Bifidobacterium longum NCC2705] gi|317483249|ref|ZP_07942244.1| ribosome-associated GTPase EngA [Bifidobacterium sp. 12_1_47BFAA] gi|316915318|gb|EFV36745.1| ribosome-associated GTPase EngA [Bifidobacterium sp. 12_1_47BFAA] Length = 709 Score = 219 bits (559), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 137/462 (29%), Positives = 221/462 (47%), Gaps = 38/462 (8%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + +A+VG PNVGKS+L NR++ ++ AVV + PG+TRDR+ A G F +VDT G Sbjct: 272 VGVLAVVGRPNVGKSSLVNRILGRRAAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGW- 330 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 + I + Q ++A+ A ++F++D + G+T D I LR P+++ NK+ Sbjct: 331 EADVEGIESAIASQAQVAVTLADAVVFVVDGQVGMTTTDERIVKMLRAAGKPVVLAVNKI 390 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D + ++ E + L E ISA H G +L V KQ Sbjct: 391 DDQASEYLAAEFWKLGLGEPYSISAMHGRGVGDLLDVALDKLKQ---------------- 434 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 +E S S R+A+VGRPNVGKS+L+N+L R + +G TRD Sbjct: 435 ---------AEKTSGYLTPSGLRRVALVGRPNVGKSSLLNQLAREERAVVNDLAGTTRDP 485 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 V N DTAG+++ E + ++ ++ CE ++L DA+ P Sbjct: 486 VDEIVNIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERCELALILFDASQPVSD 545 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVSD----KLNLLQDLRTKAIKNLPQIGDIYINTIS 357 QDL+++ + + G A+VL NKWD + + +L L + + ++ +S Sbjct: 546 QDLKVMSTAVDAGRAIVLVFNKWDAMDEFDKQRLERLWNTEFDRVMWAERV------NLS 599 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 +TG + L ++ + + W RI T LN++L K Q +P P + R+ + TQ Sbjct: 600 AKTGWHTNRLTRAMDKALESWDQRIPTGKLNAFLGKIQAAHPHPLRGGKQPRILFATQAS 659 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 + PP F+IF T + Y+RY+ LR F G PI++ Sbjct: 660 TRPPRFVIFAT--GFLEHGYRRYIERSLREEFGFEGTPIQIS 699 >gi|322689198|ref|YP_004208932.1| GTP-binding protein [Bifidobacterium longum subsp. infantis 157F] gi|320460534|dbj|BAJ71154.1| GTP-binding protein [Bifidobacterium longum subsp. infantis 157F] Length = 709 Score = 219 bits (559), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 137/462 (29%), Positives = 221/462 (47%), Gaps = 38/462 (8%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + +A+VG PNVGKS+L NR++ ++ AVV + PG+TRDR+ A G F +VDT G Sbjct: 272 VGVLAVVGRPNVGKSSLVNRILGRRAAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGW- 330 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 + I + Q ++A+ A ++F++D + G+T D I LR P+++ NK+ Sbjct: 331 EADVEGIESAIASQAQVAVTLADAVVFVVDGQVGMTTTDERIVKMLRAAGKPVVLAVNKI 390 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D + ++ E + L E ISA H G +L V KQ Sbjct: 391 DDQASEYLAAEFWKLGLGEPYSISAMHGRGVGDLLDVALDKLKQ---------------- 434 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 +E S S R+A+VGRPNVGKS+L+N+L R + +G TRD Sbjct: 435 ---------AEKTSGYLTPSGLRRVALVGRPNVGKSSLLNQLAREERAVVNDLAGTTRDP 485 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 V N DTAG+++ E + ++ ++ CE ++L DA+ P Sbjct: 486 VDEIVNIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERCELALILFDASQPVSD 545 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVSD----KLNLLQDLRTKAIKNLPQIGDIYINTIS 357 QDL+++ + + G A+VL NKWD + + +L L + + ++ +S Sbjct: 546 QDLKVMSTAVDAGRAIVLVFNKWDAMDEFDKQRLERLWNTEFDRVMWAERV------NLS 599 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 +TG + L ++ + + W RI T LN++L K Q +P P + R+ + TQ Sbjct: 600 AKTGWHTNRLTRAMDKALESWDQRIPTGKLNAFLGKIQAAHPHPLRGGKQPRILFATQAS 659 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 + PP F+IF T + Y+RY+ LR F G PI++ Sbjct: 660 TRPPRFVIFAT--GFLEHGYRRYIERSLREEFGFEGTPIQIS 699 >gi|15606936|ref|NP_214317.1| GTP binding protein Era [Aquifex aeolicus VF5] gi|8134426|sp|O67749|DER_AQUAE RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|2984183|gb|AAC07715.1| GTP binding protein Era [Aquifex aeolicus VF5] Length = 433 Score = 219 bits (559), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 130/461 (28%), Positives = 243/461 (52%), Gaps = 32/461 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + I+G PNVGKSTLFNR++ K+ A+V ++PG+TRD++ +A G F IVDT G+ Sbjct: 5 VVIIGRPNVGKSTLFNRIIGKRYAIVEDYPGVTRDKIEAKAEWAGKEFIIVDTGGLVPET 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +++ E I +A +ILF++D K G+ P D I +L +++V NK+D Sbjct: 65 KDELIREVKKVVEQEIPKADVILFVVDGKEGLNPLDQEIAKYLYPYADKVLLVVNKIDNL 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 ++N E Y+L F++I ISA+H G EL + K K+ Sbjct: 125 RQEKNVAEFYTLGFEKIFPISAQHGKGVGELLDEVVKYLKE------------------- 165 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 V+ + + +++A +GRPNVGKS+L+N +L R++ +G TRD++ I Sbjct: 166 ----------EKVETVEEGIKVAFIGRPNVGKSSLVNAILKDERVIVSPIAGTTRDAIEI 215 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + WK+ + DTAG+R+PS + +E +V +S++++ + +++DA+ +QD Sbjct: 216 PFRWKDKNFILIDTAGVRRPSNVEYGIEFYSVGRSLKAIDLADVCCLVIDASEGPTRQDK 275 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 R+ + V+ NK D+ L+ + K + L ++ T++ + G+G+ Sbjct: 276 RLGGLIERRYKGCVIVANKMDISPWSEEELEGIIRKELFFLDFAPIVF--TVATK-GKGV 332 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 ++L+ + + K + + TS++N + K + PPP + ++ Y Q + PP+ + Sbjct: 333 EELLNWIDVVYKDYTKQHKTSFVNRAVHKILSEKPPPRYRGKEVKVYYAFQESTKPPTIV 392 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 + +P+ E+YKR+ I +LR ++ PI++ + ++ Sbjct: 393 LITNYPDAWKENYKRFFIKKLREYLNIKYAPIKLVIKGRED 433 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 79/169 (46%), Gaps = 11/169 (6%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP 264 R+ ++GRPNVGKSTL NR++G + G+TRD + W I DT G+ Sbjct: 4 RVVIIGRPNVGKSTLFNRIIGKRYAIVEDYPGVTRDKIEAKAEWAGKEFIIVDTGGLVPE 63 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 ++ + L ++ K Q + + + ++D D I ++ V+L +NK Sbjct: 64 TK--DELIREVKKVVEQEIPKADVILFVVDGKEGLNPLDQEIAKYLYPYADKVLLVVNKI 121 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 D NL Q+ K + +G I IS + G+G+ +L+ V++ Sbjct: 122 D------NLRQE---KNVAEFYTLGFEKIFPISAQHGKGVGELLDEVVK 161 >gi|171913936|ref|ZP_02929406.1| GTP-binding protein [Verrucomicrobium spinosum DSM 4136] Length = 502 Score = 219 bits (559), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 140/479 (29%), Positives = 244/479 (50%), Gaps = 31/479 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKS LFNRL K +A+V + PG+TRDRL V F+I+DT GI Sbjct: 9 VAIVGRPNVGKSALFNRLAGKNIAIVHDRPGVTRDRLVATCRRGVVPFDIMDTGGIGATI 68 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 A Q+ + LA+ EA LILF++D G+TP D ++ LRK PII+V NK D+ Sbjct: 69 EDEFAAQVQAEANLAMEEADLILFVVDGVEGVTPIDLELSRTLRKSPKPIILVVNKADSD 128 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF-------------KIFKQKYPNHP 171 + + E L F +V++SA H L EL ++ ++ KYP+ Sbjct: 129 KRRAHGAEFAKLGFNHLVDVSAAHGLRIDELMALTITHLGLQAADGSTERVKPAKYPSR- 187 Query: 172 LEMIENNKRNEESPKENITS---EGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNR 228 +++ + P ++ ++ EG+++ KPLRIA+VG+PN GKS+L+N +LG R Sbjct: 188 ----NKSRKADAEPSQDESAEGDEGEAAPAKPQKPLRIAIVGKPNAGKSSLVNAILGEQR 243 Query: 229 LLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCET 288 + +G TRD++ I + DTAG+R+ ++I +++E + ++ +++R + Sbjct: 244 TIVSEIAGTTRDAIDIPCTVAGKNYTLVDTAGLRRKAKIQDAVESFSAMQATKTIRRADL 303 Query: 289 TIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMV--SDKL-NLLQDLRTKAIKNL 345 ++++D QD +I + ++ LNK+D+ + K+ + ++L A + Sbjct: 304 CLLMVDCAEGISMQDRKIASLIVEYQKPCIILLNKFDLYHPTGKMKDRTEELLENAGREF 363 Query: 346 PQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPT--I 403 + + +S + + LD + ++ ++ K T LN LQK +P Sbjct: 364 FFLRHAPMIPVSAKEKQFLDKVFKAIERVHHGAKNPPGTGVLNRMLQKAIASSPAAVGRS 423 Query: 404 FNRYNRLKYITQIQSSP-----PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIR 457 + +N L + + P P+ ++F +K+ ESY R+L + +R + G+P + Sbjct: 424 GSSFNLLYATFRKEDEPSAIPVPNIVLFANRADKLQESYLRHLESTIREAWPAEGLPFQ 482 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 45/171 (26%), Positives = 79/171 (46%), Gaps = 11/171 (6%) Query: 199 NISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDT 258 I P +A+VGRPNVGKS L NRL G N + + G+TRD + + P +I DT Sbjct: 2 EIQNPKMVAIVGRPNVGKSALFNRLAGKNIAIVHDRPGVTRDRLVATCRRGVVPFDIMDT 61 Query: 259 AGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVV 318 G+ + I + + ++ ++ + + ++D DL + ++ + ++ Sbjct: 62 GGIG--ATIEDEFAAQVQAEANLAMEEADLILFVVDGVEGVTPIDLELSRTLRKSPKPII 119 Query: 319 LALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMV 369 L +NK D SDK R ++G ++ +S G +D+LM Sbjct: 120 LVVNKAD--SDK-------RRAHGAEFAKLGFNHLVDVSAAHGLRIDELMA 161 >gi|183601656|ref|ZP_02963026.1| bifunctional cytidylate kinase/GTP-binding protein [Bifidobacterium animalis subsp. lactis HN019] gi|241190845|ref|YP_002968239.1| bifunctional cytidylate kinase/GTP-binding protein [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196251|ref|YP_002969806.1| bifunctional cytidylate kinase/GTP-binding protein [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183219262|gb|EDT89903.1| bifunctional cytidylate kinase/GTP-binding protein [Bifidobacterium animalis subsp. lactis HN019] gi|240249237|gb|ACS46177.1| bifunctional cytidylate kinase/GTP-binding protein [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250805|gb|ACS47744.1| bifunctional cytidylate kinase/GTP-binding protein [Bifidobacterium animalis subsp. lactis DSM 10140] gi|289178585|gb|ADC85831.1| EngA [Bifidobacterium animalis subsp. lactis BB-12] gi|295793834|gb|ADG33369.1| bifunctional cytidylate kinase/GTP-binding protein [Bifidobacterium animalis subsp. lactis V9] Length = 710 Score = 219 bits (559), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 142/463 (30%), Positives = 228/463 (49%), Gaps = 40/463 (8%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI- 60 + IA+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ A G F +VDT G Sbjct: 273 VGVIAVVGRPNVGKSTLVNRILGRRAAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWE 332 Query: 61 --ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVS 118 +G + +IA Q ++A+ A ++F++D+ G+T D I LR+ P+ + Sbjct: 333 ADVEGIDSAIAS----QAQIAVELADSVIFVVDALTGLTQTDERIVKLLRQAGKPVTVAV 388 Query: 119 NKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 NK+D +I++ E + L E ISA H G +L Sbjct: 389 NKIDDQISEYMAAEFWKLGLGEPYPISAMHGRGVGDLL---------------------- 426 Query: 179 KRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 +E+ + ++E S S R+A+VGRPNVGKS+L+N+L R + +G T Sbjct: 427 ---DEAVAQMKSAEKTSGFLTPSHLRRVALVGRPNVGKSSLLNQLSHSERSVVNELAGTT 483 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RD V DTAG+++ E + ++ ++ E +VL DA+IP Sbjct: 484 RDPVDEIVTIDGEDYLFIDTAGIKRRQHKLSGAEYYSSLRTQAAIERSELALVLFDASIP 543 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVS--DKLNLLQDLRTKAIKNLPQIGDIYINTI 356 QDL+++ + + G AVVL NKWD++ D+ + + +T+ ++ + Sbjct: 544 ISDQDLKVMSTAVDAGRAVVLVFNKWDLMDEFDRQRMERLWKTE----FDRVTWAQRVNL 599 Query: 357 SGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQI 416 S +TG + L ++ + + W RI T LN++L K Q +P P + R+ + TQ Sbjct: 600 SAKTGWHTNRLAKAMTQALESWDKRIPTGKLNAFLGKIQASHPHPVRGGKQPRILFATQA 659 Query: 417 QSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 S PP F+IF T + Y+R+L LR F G PI++ Sbjct: 660 SSRPPRFVIFAT--GFLEHGYRRFLERSLREEFGFEGSPIQIS 700 >gi|326440452|ref|ZP_08215186.1| GTP-binding protein Der [Streptomyces clavuligerus ATCC 27064] Length = 482 Score = 219 bits (559), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 140/469 (29%), Positives = 236/469 (50%), Gaps = 54/469 (11%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD-- 62 +A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ +A G F +VDT G Sbjct: 47 LAVVGRPNVGKSTLVNRIIGRREAVVEDKPGVTRDRVTYEAEWAGRRFKVVDTGGWEQDV 106 Query: 63 -GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 G + S+A Q E AI A ++F++D+ G T D A+ LR+ P+++ +NK+ Sbjct: 107 LGIDASVAA----QAEYAIEAADAVVFVVDASVGATDTDEAVVRLLRRAGKPVVLCANKV 162 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D + + ++SL E +SA H GT ++ + + Sbjct: 163 DGPSGEADAAALWSLGLGEPHPVSALHGRGTGDMLDAVLEALP----------------- 205 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 E+P ++ + + P RIA++GRPNVGKS+L+N++ R++ +G TRD Sbjct: 206 -EAPAQSFGT-------AVGGPRRIALIGRPNVGKSSLLNKVAREERVVVNELAGTTRDP 257 Query: 242 V-------SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLD 294 V ++W + DTAG+R+ + E + ++ +V E +VL+D Sbjct: 258 VDELIELGGVTWKF-------VDTAGIRRRVHLQEGADYYASLRTAAAVEKAEVAVVLID 310 Query: 295 ATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSD--KLNLLQDLRTKAIKNLPQIGDIY 352 A+ QD RIV G A+V+A NKWD + + + L +++ T+ L QI Sbjct: 311 ASENISVQDQRIVTMAVEAGRAMVIAFNKWDTLDEERRYYLEREIETE----LGQIAWAP 366 Query: 353 INTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKY 412 +S RTG ++ L+ ++ W+TR+ T LN++L + +P P + R+ + Sbjct: 367 RVNVSARTGRHMEKLVPAIETALAGWETRVPTGRLNAFLGELVAAHPHPIRGGKQPRILF 426 Query: 413 ITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 TQ + PP F++F + + Y+R++ RLR F G PI++ + Sbjct: 427 GTQAGTKPPRFVLFSS--GFLEHGYRRFVERRLREEFGFEGTPIQISVR 473 >gi|120601244|ref|YP_965644.1| GTP-binding protein EngA [Desulfovibrio vulgaris DP4] gi|166198712|sp|A1V9V1|DER_DESVV RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|120561473|gb|ABM27217.1| small GTP-binding protein [Desulfovibrio vulgaris DP4] Length = 495 Score = 219 bits (559), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 144/494 (29%), Positives = 249/494 (50%), Gaps = 37/494 (7%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGV---IFNIVDT 57 M IA+VG PNVGKSTLFNRL++ A+ + PG+TRDR+ G I+ G F I+DT Sbjct: 1 MFAKIALVGRPNVGKSTLFNRLIRSNRAITHDMPGVTRDRMEG--IVRGRNKRPFGIIDT 58 Query: 58 AGIADGKNCSIAK----------QMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFL 107 GI + ++A+ ++ Q E AI E + ++D + G+ P+D + S+L Sbjct: 59 GGITLDGHAAVAEGPAGIRGFEAEILRQAEEAIAECVAVCLVVDGREGLLPFDEHLASYL 118 Query: 108 RKKNIPIIIVSNKMDTRIAQRNFY--EIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQ 165 R+ P+++V NK+D I + + E + L F ++ +SAEH L S + + + Sbjct: 119 RRTGKPVLVVVNKVDG-IEKEDVLTAEFHILGFP-VLAVSAEHGHNLRWLESEMRDLLPE 176 Query: 166 KYPNHPLEMIENNKRNEESPKENIT---SEGKSSVKNI-------------SKPLRIAVV 209 + + + + + + +EG +S PLR+ ++ Sbjct: 177 EDEDGIDDDAADATAVASADADVDADVETEGGTSASETEEGITEETVEDEPEAPLRLCML 236 Query: 210 GRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITE 269 GRPN GKS+L+N L G NR++ +G TRDSV +++ DTAG+R+ SRIT+ Sbjct: 237 GRPNAGKSSLVNALTGTNRMIVSDVAGTTRDSVDVAFEKDGLSYTFVDTAGVRRRSRITD 296 Query: 270 SLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSD 329 ++E+ +V S++S T+++LDA QD R+++ + ++ +NK D+V Sbjct: 297 TVERYSVNSSLKSTTKAHVTLLVLDAVEGITSQDKRLIELLDERKTPFMVLVNKMDLVPA 356 Query: 330 KLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNS 389 K + + N Q + + +S +TG L ++ I + RI T LN Sbjct: 357 KAREDGKRNFRDLLNFCQ--HVPLLFVSAKTGYELRSIVPLAARIRRECSVRIPTGQLNR 414 Query: 390 WLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINF 449 +++ ++ PP + + Y+TQ +S PP+F++F ++I Y +Y+ LR F Sbjct: 415 AMEEVITRHQPPVVRRVRPKFYYMTQAESQPPTFVLFVNDADRIQAPYAKYIEKSLRRLF 474 Query: 450 SLSGIPIRMCFQSS 463 + P+R+ F+SS Sbjct: 475 GIEHAPMRVHFRSS 488 >gi|298492105|ref|YP_003722282.1| ribosome-associated GTPase EngA ['Nostoc azollae' 0708] gi|298234023|gb|ADI65159.1| ribosome-associated GTPase EngA ['Nostoc azollae' 0708] Length = 454 Score = 219 bits (559), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 135/467 (28%), Positives = 231/467 (49%), Gaps = 41/467 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKSTL NRL + A+V + PG+TRDR Y A F +VDT G+ Sbjct: 6 VAIIGRPNVGKSTLVNRLAGDQTAIVHDEPGVTRDRTYRPAFWGNREFVVVDTGGLVFND 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 + + Q +A++EA +F++D + G P D I +L ++ +PI++ NK ++ Sbjct: 66 DTEFLPLIRQQALMALSEACAAIFVVDGQRGPMPADQEIADWLHQQPVPILLAVNKCESP 125 Query: 124 ---RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 I F+E L E ISA H GT E+ E+I + Sbjct: 126 DQGLIQASGFWE---LGLGEPYPISAIHGSGTGEILD---------------ELITHVPN 167 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 ++SP++N+ +++A++GRPNVGKS+L+N +G R + SG TRD Sbjct: 168 VKDSPEDNV--------------IKVAIIGRPNVGKSSLLNAFVGEERAIVSPISGTTRD 213 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 ++ + DTAG+RK I E ++ ++ +++R + +++LDA Sbjct: 214 TIDTEIVRNGQTYRLIDTAGIRKKKHIEYGTEFFSINRAFKAIRRADVVLLVLDAEDGAT 273 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRT--KAIKNLPQIGDIYINTISG 358 +QD ++ + G A ++ +NKWD V + D +A + + DI +S Sbjct: 274 EQDQKLAGRITEEGRACIIVVNKWDAVEKDSYTIYDYEKGLEARLHFTEWADIIF--VSA 331 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWL-QKTQLQNPPPTIFNRYNRLKYITQIQ 417 TG+ ++ ++ V + + K R+TTS +N L +PP + R ++ Y TQ+ Sbjct: 332 VTGQRVEKILELVNKAAQAHKRRVTTSVVNEVLTDAVSWHSPPTSRGGRQGKIYYGTQVS 391 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 + PP+F +F + ++Y+RY+ + R G PIR+ ++S K Sbjct: 392 TQPPTFALFVNDAQRFNDNYRRYIERQFRKQLGFDGTPIRLFWRSKK 438 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 49/161 (30%), Positives = 81/161 (50%), Gaps = 10/161 (6%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + +AI+G PNVGKS+L N V ++ A+V G TRD + + + NG + ++DTAGI Sbjct: 176 VIKVAIIGRPNVGKSSLLNAFVGEERAIVSPISGTTRDTIDTEIVRNGQTYRLIDTAGIR 235 Query: 62 DGKNCSIAKQMN--DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 K+ + ++ AI A ++L ++D++ G T D + + ++ IIV N Sbjct: 236 KKKHIEYGTEFFSINRAFKAIRRADVVLLVLDAEDGATEQDQKLAGRITEEGRACIIVVN 295 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K D +++ Y IY E E L +E +IF Sbjct: 296 KWDA--VEKDSYTIYDY------EKGLEARLHFTEWADIIF 328 >gi|239978699|ref|ZP_04701223.1| GTP-binding protein EngA [Streptomyces albus J1074] gi|291450591|ref|ZP_06589981.1| GTP-binding protein engA [Streptomyces albus J1074] gi|291353540|gb|EFE80442.1| GTP-binding protein engA [Streptomyces albus J1074] Length = 487 Score = 219 bits (559), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 142/469 (30%), Positives = 238/469 (50%), Gaps = 53/469 (11%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD-- 62 +A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ +A G F +VDT G Sbjct: 51 LAVVGRPNVGKSTLVNRIIGRREAVVEDKPGVTRDRVTYEAEWAGRRFKLVDTGGWEQDV 110 Query: 63 -GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 G + S+A Q E AI+ A ++F++D+ G T D A+ LRK P+++ +NK+ Sbjct: 111 LGIDASVAA----QAEYAIDAADAVVFVVDATVGATDTDAAVVRLLRKAGKPVVLCANKV 166 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D A+ + ++SL E +SA H GT ++ + + P+ P + Sbjct: 167 DGPSAEADAAMLWSLGLGEPHPVSALHGRGTGDMLDAVIEAL----PDAPAQTFGGA--- 219 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 +P P RIA++GRPNVGKS+L+N++ +R++ +G TRD Sbjct: 220 --AP---------------GGPRRIALIGRPNVGKSSLLNKVAREDRVVVNELAGTTRDP 262 Query: 242 V-------SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLD 294 V ++W + DTAG+RK + + + ++ +V E ++L+D Sbjct: 263 VDELIELGGVTWKF-------VDTAGIRKRVHLQQGADYYASLRTAAAVEKAEVAVILID 315 Query: 295 ATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSD--KLNLLQDLRTKAIKNLPQIGDIY 352 A QD RIV ++G A+V+A NKWD + + + L +++ T+ L QI Sbjct: 316 AGESISVQDQRIVTMAVDSGRAIVVAYNKWDTLDEERRYYLEREIETE----LAQIAWAP 371 Query: 353 INTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKY 412 +S TG ++ L+ ++ W+TR+ T LN++L + +P P + R+ + Sbjct: 372 RVNVSAATGRHMERLVPAIETALAGWETRVPTGRLNAFLGELVSSHPHPVRGGKQPRILF 431 Query: 413 ITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 TQ + PP F++F + I Y+R++ RLR F G PI++ + Sbjct: 432 GTQAGTKPPRFVLFAS--GFIEHGYRRFVERRLREEFGFEGTPIKISVR 478 >gi|119494580|ref|ZP_01624713.1| GTP-binding protein EngA [Lyngbya sp. PCC 8106] gi|119452086|gb|EAW33297.1| GTP-binding protein EngA [Lyngbya sp. PCC 8106] Length = 453 Score = 219 bits (558), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 137/466 (29%), Positives = 241/466 (51%), Gaps = 43/466 (9%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL NRL + + ++V + PGITRDR Y A F++VDT G+ Sbjct: 6 VAIVGRPNVGKSTLVNRLSETQDSIVHDQPGITRDRTYRYAYWQDREFSVVDTGGLIFDD 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 + + +Q +A+ EA + +F++D + G+T D AI S+LR+ ++P+++ NK ++ Sbjct: 66 DTEFLPLIREQVMVALAEATVAIFVVDGQTGLTGGDEAIASWLREHSVPVLLAVNKCESP 125 Query: 124 ---RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 I F+E L +S+ H GT EL + K Sbjct: 126 TTGLIQSMQFWE---LGLGNPFPLSSIHGSGTGELLDELIKYI----------------- 165 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 PK + E S+ +R+A+VGRPNVGKS+L+N LG NR + SG TRD Sbjct: 166 ----PKADELEE--------SEEIRVAIVGRPNVGKSSLLNAFLGENRAIVSPISGTTRD 213 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 ++ + DTAG+R+ + E + ++ +++R ++++DA Sbjct: 214 AIDTVVERNGKTYRLVDTAGIRRKKNVEYGAEFFGINRAFKAIRRSNIVLLIIDAIDRVT 273 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVS-DKLNLLQDLR-TKA-IKNLPQIGDIYINTIS 357 +QDL++ + V G A V+ +NKWD++ D +L+ R KA + + I+++ ++ Sbjct: 274 EQDLKLANRVSEEGRACVIVVNKWDIIEKDTYTILEYEREVKARLYFMDWAKTIFVSAMT 333 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKT-QLQNPPPTIFNRYNRLKYITQI 416 G+ E + DL+ + + + R++T+ +N +++ +PP T + ++ Y TQ+ Sbjct: 334 GQRVEKIIDLVDQAVAEH---QRRVSTAVINEVIEEAVSWHSPPTTRQGKQGKIYYGTQV 390 Query: 417 QSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 S PP+ ++F P + E+Y+RY+ ++ R G PIR+ ++ Sbjct: 391 SSQPPTLVLFVNDPKRFNENYRRYMESQFRQQLGFLGTPIRLIWRG 436 >gi|298528797|ref|ZP_07016201.1| ribosome-associated GTPase EngA [Desulfonatronospira thiodismutans ASO3-1] gi|298512449|gb|EFI36351.1| ribosome-associated GTPase EngA [Desulfonatronospira thiodismutans ASO3-1] Length = 442 Score = 219 bits (558), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 140/468 (29%), Positives = 239/468 (51%), Gaps = 40/468 (8%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ + IVG PNVGKSTLFNRL+++ A+V + PG+TRD LYG+ + +VDT G+ Sbjct: 8 MLPFVVIVGRPNVGKSTLFNRLLRQNKAMVHDRPGVTRDSLYGRVQGRTRDYTLVDTGGL 67 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + + +++ +Q A++ A LILF++D AG+T D + + LR+ P+ +V NK Sbjct: 68 VLEQGAQLEEEIYEQVREAMHSADLILFMVDGSAGVTALDEQLAAMLRQSRRPVRLVVNK 127 Query: 121 MD----TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIE 176 +D + + +F YSL F ++ +SA H L E IE Sbjct: 128 VDGEERAALVEGDF---YSLGF-DMNMVSAAHGYNMPVLQ----------------EAIE 167 Query: 177 NNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSG 236 ++ E P++ LR++++GRPNVGKS+L+N LLG R+L S++G Sbjct: 168 SSLPAHEEPEDQAAH------------LRLSLLGRPNVGKSSLVNTLLGQERVLVSSRAG 215 Query: 237 ITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDAT 296 TRD V + + DTAG+R+ + I++ LE+ + ++++S + + +++LDA Sbjct: 216 TTRDCVDVILEKGDKRYVFIDTAGVRRKTTISDDLERFSALRAIRSCQRSDVALLVLDAL 275 Query: 297 IPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDK-LNLLQDLRTKAIKNLPQIGDIYINT 355 QD +++ + +V+ +NK D + K L L+ + IY + Sbjct: 276 SGMVAQDKKLLSFLEREKIPLVIVVNKVDQIPRKDLGKLKRYFQDELAFCAHAPVIYTSC 335 Query: 356 ISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQ 415 I T GL L+ ++ + R+ T LN ++ + PP + R ++ Y+TQ Sbjct: 336 I---TRAGLGGLIPLAEKVLGQSRVRVGTGELNRLVRDAVQAHQPPLVKGRRAKIYYLTQ 392 Query: 416 IQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSS 463 +SPP F+ F P I +Y RYL ++R + L P+++ F+ S Sbjct: 393 PGTSPPEFVFFVNDPGLIKPAYARYLEKQIRKSLGLDVTPVKLFFRGS 440 >gi|145351972|ref|XP_001420333.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144580567|gb|ABO98626.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 555 Score = 219 bits (558), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 142/484 (29%), Positives = 248/484 (51%), Gaps = 52/484 (10%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD-- 62 +A+VG PNVGKS LFNRL K A+V + PG+TRDR+Y +A F +VDT G+ + Sbjct: 89 VAVVGRPNVGKSALFNRLTGTKRAIVYDEPGVTRDRMYVRAYWGEHEFMMVDTGGLENLP 148 Query: 63 ------------GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKK 110 G + + Q A+ EA +++F++D + G+T D I ++LR+ Sbjct: 149 ANPEGGPKTDTVGGVEILPGMIEAQAAEAVREASVLIFVVDGQVGLTAADMDIFAWLRRT 208 Query: 111 N--IPIIIVSNKMD-TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKY 167 + IP+ + NK + T + E +SL + +SA GT EL + Sbjct: 209 HSKIPLHLAVNKCESTTKGEDQILEFWSLGDVTPLAVSAISGTGTGELLDNMCATLP--- 265 Query: 168 PNHPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYN 227 P + ++ EE E+I P+ +A++GRPNVGKS+L+N L G Sbjct: 266 ---PPPQVSEDENAEE---EDI-------------PVTVAIIGRPNVGKSSLLNGLAGEA 306 Query: 228 RLLTGSQSGITRDSVS--ISWNWKNHPIEIFDTAGMRKPSRI---TESLEQKTVKKSMQS 282 R + SG TRDS+ + + + DTAG+R+ +++ T+ E+ +V +++Q+ Sbjct: 307 RSIVSDFSGTTRDSIDTLVEDKYTGRKFTLIDTAGIRRRTQVKSGTDGAEKLSVGRALQA 366 Query: 283 VRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLL----QDLR 338 ++ + ++++D T +QD + + G A+VL +NKWD+V + + D+R Sbjct: 367 MKRADVVVLVIDGTEGPSQQDFVLAERATQEGCAIVLCINKWDLVDKDTHTMNKYTDDMR 426 Query: 339 TKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQN 398 K ++ +Y + + TG+ + ++ + ++ + R+TT+ LNS +Q+ L Sbjct: 427 LK-LRVFEYAEIVYTSAL---TGQRIQKILDAAQVASENHRKRLTTATLNSVVQEATLWK 482 Query: 399 PPPTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 PP+ +R ++ YITQ PP+F+ F P P++Y+RY+ +LR N G PIR+ Sbjct: 483 LPPSRNSRKGKIYYITQASIRPPTFVFFVNDPKLFPDTYRRYMERQLRENIGFPGTPIRL 542 Query: 459 CFQS 462 ++ Sbjct: 543 LWRG 546 Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 51/183 (27%), Positives = 87/183 (47%), Gaps = 22/183 (12%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK- 263 R+AVVGRPNVGKS L NRL G R + + G+TRD + + W H + DT G+ Sbjct: 88 RVAVVGRPNVGKSALFNRLTGTKRAIVYDEPGVTRDRMYVRAYWGEHEFMMVDTGGLENL 147 Query: 264 PSRITESLEQKTV-----------KKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFN 312 P+ + TV ++ ++VR I ++D + D+ I + Sbjct: 148 PANPEGGPKTDTVGGVEILPGMIEAQAAEAVREASVLIFVVDGQVGLTAADMDIFAWLRR 207 Query: 313 TGHAVV---LALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGR-TGEGLDDLM 368 T H+ + LA+NK + + + + + + L + + ++ ISG TGE LD++ Sbjct: 208 T-HSKIPLHLAVNKCESTTKGEDQILEFWS-----LGDVTPLAVSAISGTGTGELLDNMC 261 Query: 369 VSV 371 ++ Sbjct: 262 ATL 264 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 64/131 (48%), Gaps = 17/131 (12%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYG--QAIINGVIFNIVDTAGI- 60 T+AI+G PNVGKS+L N L + ++V + G TRD + + G F ++DTAGI Sbjct: 284 TVAIIGRPNVGKSSLLNGLAGEARSIVSDFSGTTRDSIDTLVEDKYTGRKFTLIDTAGIR 343 Query: 61 --------ADG-KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKN 111 DG + S+ + + A+ A +++ +ID G + D + ++ Sbjct: 344 RRTQVKSGTDGAEKLSVGRALQ-----AMKRADVVVLVIDGTEGPSQQDFVLAERATQEG 398 Query: 112 IPIIIVSNKMD 122 I++ NK D Sbjct: 399 CAIVLCINKWD 409 >gi|209527936|ref|ZP_03276422.1| small GTP-binding protein [Arthrospira maxima CS-328] gi|209491626|gb|EDZ91995.1| small GTP-binding protein [Arthrospira maxima CS-328] Length = 453 Score = 219 bits (557), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 138/469 (29%), Positives = 241/469 (51%), Gaps = 49/469 (10%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKSTL NRL + + A+V + PG+TRDR Y A F +VDT G+ Sbjct: 6 VAIIGRPNVGKSTLVNRLTQTQDAIVHDQPGMTRDRTYRSAYWQDREFTVVDTGGLVFDD 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD-- 122 + + +Q +A+ EA + ++D + G T D AI S+LR++ +PI++ NK + Sbjct: 66 DTEFLPLIREQALMALAEATAAILVVDGQTGPTGGDEAIASWLRQQKVPILLAVNKCESP 125 Query: 123 ----TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 T+ AQ F+E L IS+ H GT EL + +E + + Sbjct: 126 TQGLTQAAQ--FWE---LGLGNPFPISSIHGSGTGELLDAL------------IENLPAS 168 Query: 179 KRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 NE+ S+ LR+A+VGRPNVGKS+L+N LG R + SG T Sbjct: 169 TDNED-----------------SEELRVAIVGRPNVGKSSLLNTFLGQERAIVSPISGTT 211 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RD++ + + DTAG+R+ + E + ++ +++R + + ++DA Sbjct: 212 RDAIDTIVEHNGNTYRLVDTAGIRRKKHVEYGAEFFGINRAFKAIRRADVVLFVIDAVEG 271 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVS-DKLNLLQD---LRTKAIKNLPQIGDIYIN 354 QD ++ + + G A V+ +NKWD V D +L+ +R++ + L I+++ Sbjct: 272 VTDQDQKLAGRISDDGRACVIVVNKWDAVEKDSYTILEYEKVMRSR-LYFLDWADMIFVS 330 Query: 355 TISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKT-QLQNPPPTIFNRYNRLKYI 413 ++G+ E + L+ E N + R++TS +N +++ + +PP + R ++ Y Sbjct: 331 AMTGQRVEKIFKLVDKAAEEN---RRRVSTSVINEVIEEAVRWHSPPTSRQGRQGKIYYG 387 Query: 414 TQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 TQ+ SSPP+ ++F P + ++Y+RY+ ++ R +G PIR+ ++ Sbjct: 388 TQVTSSPPTIVLFVNDPKRFGDNYRRYMESQFRQQLGFAGTPIRLLWRG 436 >gi|75909106|ref|YP_323402.1| GTP-binding protein EngA [Anabaena variabilis ATCC 29413] gi|123609166|sp|Q3M929|DER_ANAVT RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|75702831|gb|ABA22507.1| Small GTP-binding protein domain protein [Anabaena variabilis ATCC 29413] Length = 453 Score = 219 bits (557), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 140/470 (29%), Positives = 239/470 (50%), Gaps = 47/470 (10%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKSTL NRL ++ A+V + PG+TRDR Y A + F +VDT G+ Sbjct: 6 VAIIGRPNVGKSTLVNRLAGEQTAIVHDEPGVTRDRTYLPAYWSDREFQVVDTGGLVFND 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 + + Q A++EA +F+++ + G D I +LR++ +P+ + NK ++ Sbjct: 66 DTEFLPLIRQQALAALHEASAAIFVVNGQTGPNSADEEIAEWLRQQPVPVFLAVNKCESP 125 Query: 124 ---RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 I F+E L E ISA H GT EL + ++ K P LE ENN+ Sbjct: 126 DQGSIQASEFWE---LGLGEPYPISAIHGNGTGEL---LDELIKHLPPTTELE--ENNE- 176 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 ++IA++GRPNVGKS+L+N G R++ SG TRD Sbjct: 177 -----------------------IKIAIIGRPNVGKSSLLNAFAGEERVIVSPISGTTRD 213 Query: 241 SVS--ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 ++ I N +N+ + DTAG+RK I E ++ ++ +++R + ++++DA Sbjct: 214 AIDTFIERNGQNY--RLIDTAGIRKKKSIDYGTEFFSINRAFKAIRRADVVLLVIDALDG 271 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRT--KAIKNLPQIGD-IYINT 355 +QD ++ + + G A V+ +NKWD V + D +A + + D IY++ Sbjct: 272 VTEQDQKLAGRILDEGKACVVVVNKWDAVEKDSYTIYDYEKNLEARLHFTEWADTIYVSA 331 Query: 356 ISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKT-QLQNPPPTIFNRYNRLKYIT 414 + TG+ ++ ++ V + N+ K R++TS +N L+ +PP + R R+ Y T Sbjct: 332 V---TGQRVEKILELVTKANEEHKRRVSTSVINEVLEDAVSWHSPPTSRGGRQGRIYYGT 388 Query: 415 QIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 Q+ + PP+ +F + ++Y+RY+ + R G PIR+ ++S K Sbjct: 389 QVSTQPPTIALFVNEAKRFNDNYRRYIERQFRQQLGFKGTPIRLLWRSKK 438 >gi|284116005|ref|ZP_06386701.1| GTP-binding protein engA [Candidatus Poribacteria sp. WGA-A3] gi|283829542|gb|EFC33894.1| GTP-binding protein engA [Candidatus Poribacteria sp. WGA-A3] Length = 435 Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 134/454 (29%), Positives = 219/454 (48%), Gaps = 28/454 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A++G PNVGKSTLFNR++ + A+V + PG+TRDR+Y + G F +VDT G+ Sbjct: 4 VAVIGRPNVGKSTLFNRILGTRNAIVDDRPGVTRDRIYAECTYQGRRFQVVDTGGLDPTS 63 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + Q++ A+ A ++L ++D + G+TP D I L + P V NK+DT Sbjct: 64 TDDMLGLIRRQSQAALAAADILLVIMDGRDGLTPMDREIVDGLHGVDKPTFWVVNKVDTP 123 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + Y L + ISAEH G EL + F P H +++E Sbjct: 124 ALEPLLADFYHLGKDTLFPISAEHGHGVDEL----LEAFLHLLPAHDEDLME-------- 171 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 + R+A+VGRPNVGKSTL+N +LG R + G TRD + Sbjct: 172 ----------------TATTRVAMVGRPNVGKSTLVNTILGEERAVVSDVPGTTRDPIDT 215 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + DTAG+R+ R+ +E +V ++M+++ + ++LLD QD Sbjct: 216 HLEREGRTFLLTDTAGLRRRGRVEPGIEGYSVARTMRALGRSDIGVLLLDGVEGVTDQDT 275 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 +I + G V+ +NKWD+ ++ + + P + I S + + Sbjct: 276 KIAGLIQRQGRGCVMLVNKWDLRRNQREAKAKFSLELQRQFPFFTFVPILFGSALAPKTV 335 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 D L +V + + + R+ T+ LN +LQK NP + Y+TQ+ + PP+F Sbjct: 336 DHLFDAVTRVMEAFSYRVPTNRLNLFLQKALTDNPLTVKKGNPPKSLYMTQVSTKPPTFA 395 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 +F + +Y RYL N+LR F G P+R+ Sbjct: 396 LFAGKSAVLTPAYLRYLENQLRATFGFEGTPLRI 429 >gi|307328928|ref|ZP_07608097.1| ribosome-associated GTPase EngA [Streptomyces violaceusniger Tu 4113] gi|306885438|gb|EFN16455.1| ribosome-associated GTPase EngA [Streptomyces violaceusniger Tu 4113] Length = 487 Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 137/464 (29%), Positives = 234/464 (50%), Gaps = 44/464 (9%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD-- 62 +A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ +A +G F +VDT G Sbjct: 52 LAVVGRPNVGKSTLVNRILGRREAVVEDRPGVTRDRVTYEAEWSGRRFKVVDTGGWEQDV 111 Query: 63 -GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 G + S+A Q E AI A ++F++D+ G T D A+ LR+ P+++ +NK+ Sbjct: 112 LGLDASVAA----QAEFAIEAADAVVFVVDATVGATDTDEAVVKLLRRAGKPVVLCANKV 167 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D + + ++SL E +SA H GT ++ + Sbjct: 168 DGPSGEADAAMLWSLGLGEPHPVSALHGRGTGDMLDAVLDALP----------------- 210 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 E+P + + + P RIA+VGRPNVGKS+L+N++ R++ +G TRD Sbjct: 211 -EAPAQTFGA-------TLGGPRRIALVGRPNVGKSSLLNKVANEERVVVNELAGTTRDP 262 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 V + DTAG+R+ + E + ++ +V E +VL+DA+ Sbjct: 263 VDEIIELGGTTWKFVDTAGIRRRVHLQEGADYYASLRTAAAVEKAEVAVVLIDASESISV 322 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVSD--KLNLLQDLRTK--AIKNLPQIGDIYINTIS 357 QD RI+ G A+V+A NKWD + + + L +++ T+ I+ P++ +S Sbjct: 323 QDQRIITMAVEAGRALVIAYNKWDTLDEERRYYLEREIETELGQIQWAPRV------NVS 376 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 RTG ++ L+ ++ W+TR+ T LN++L + +P P + R+ + TQ Sbjct: 377 ARTGRHMEKLVPAIETALAGWETRVPTGRLNAFLGEIVASHPHPIRGGKQPRILFGTQAG 436 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 + PP F++F + + Y+R++ RLR F G P+++ + Sbjct: 437 TRPPRFVLFAS--GFLEAGYRRFIERRLREEFGFEGTPLQISVR 478 >gi|271964501|ref|YP_003338697.1| GTP-binding protein [Streptosporangium roseum DSM 43021] gi|270507676|gb|ACZ85954.1| GTP-binding protein [Streptosporangium roseum DSM 43021] Length = 472 Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 141/458 (30%), Positives = 240/458 (52%), Gaps = 33/458 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ A G F +VDT G D Sbjct: 36 VAVVGRPNVGKSTLVNRIIGRREAVVEDVPGVTRDRVTYDATWRGRRFTVVDTGGW-DPD 94 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +A ++ +Q ++A A +ILF++D+ G+T D + LR P+I+ +NK+D + Sbjct: 95 ATGMALKIAEQAQVAAELADVILFVVDAVVGVTDADEIVGHVLRGSGKPVILAANKVDNQ 154 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + +++L E +SA H + +L VI K P E+ Sbjct: 155 QMELEAAGLWALGLGEPQPVSALHGRSSGDLLDVIL----DKLP--------------ET 196 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P++ E P R+A+VG+PNVGKS+L+N+L G R+L +G TRD V Sbjct: 197 PQQRFGVE--------RGPRRVALVGKPNVGKSSLLNKLAGEERVLVDPMAGTTRDPVDE 248 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 DTAG+R+ R + + ++ ++ E +VL+DA+ +QDL Sbjct: 249 LIQLGGKTWRFVDTAGIRRRDRELKGADFYASMRTRGALERSEIAVVLIDASDVLTEQDL 308 Query: 305 RIVDSVFNTGHAVVLALNKWDMV-SDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 RI+ V +G A+V+A NKWD++ D+ L+ + + +P + +N IS +TG Sbjct: 309 RIISLVIESGRAMVVAFNKWDLLDEDRRYYLEKEIDRQLVRVPWA--LRVN-ISAKTGWH 365 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 ++ L+ ++ + W TR+ T+ LN++L PPP + ++ + TQ + PP F Sbjct: 366 VERLVPAIEKALDSWSTRVPTARLNAFLTDLVAATPPPVRGGKQPKILFATQASTEPPKF 425 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 ++F + + E+Y+R++ R+R F +G P+ + + Sbjct: 426 VLFTS--GFLEETYRRFIERRIREEFGFAGSPLEVTMK 461 >gi|254385852|ref|ZP_05001171.1| GTP-binding protein engA [Streptomyces sp. Mg1] gi|194344716|gb|EDX25682.1| GTP-binding protein engA [Streptomyces sp. Mg1] Length = 486 Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 135/469 (28%), Positives = 235/469 (50%), Gaps = 53/469 (11%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD-- 62 +A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ +A G F +VDT G Sbjct: 47 LAVVGRPNVGKSTLVNRIIGRREAVVEDKPGVTRDRVTYEAEWAGRRFKVVDTGGWEQDV 106 Query: 63 -GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 G + S+A Q E AI A ++F++D+K G T D A+ LR+ P+++ +NK+ Sbjct: 107 LGIDASVAA----QAEYAIEAADAVVFVVDAKVGATDTDEAVVKLLRRAGKPVVLCANKV 162 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D + + + ++SL + +S+ H GT ++ + + Sbjct: 163 DGQSGEADAASLWSLGLGQPHPVSSLHGRGTGDMLDAVLEALP----------------- 205 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 E+P++ + P RIA++GRPNVGKS+L+N++ +R++ +G TRD Sbjct: 206 -EAPEQTFGG------AALGGPRRIALIGRPNVGKSSLLNKVAKEDRVVVNELAGTTRDP 258 Query: 242 V-------SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLD 294 V ++W + DTAG+RK + + + ++ +V E ++L+D Sbjct: 259 VDELIELGGVTWKF-------VDTAGIRKKVHLQQGADYYASLRTAAAVEKAEVAVILID 311 Query: 295 ATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSD--KLNLLQDLRTKAIKNLPQIGDIY 352 T QD RI+ G A+V+A NKWD + + + L +++ T+ + Q+ Sbjct: 312 TTETISVQDQRIITMAVEAGRAIVIAYNKWDELDEERRYYLEREIETE----MQQVAWAP 367 Query: 353 INTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKY 412 +S TG ++ L+ ++ W+TR+ T LN++L + +P P + R+ + Sbjct: 368 RVNVSALTGRHMEKLVPAIETALAGWETRVPTGRLNAFLGEVVAAHPHPIRGGKQPRILF 427 Query: 413 ITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 TQ S PP F++F + + Y+R++ RLR F G PI + + Sbjct: 428 GTQAGSKPPRFVLFAS--GFLEHGYRRFIERRLREEFGFEGTPIHISVR 474 >gi|149200553|ref|ZP_01877562.1| GTP-binding protein [Lentisphaera araneosa HTCC2155] gi|149136350|gb|EDM24794.1| GTP-binding protein [Lentisphaera araneosa HTCC2155] Length = 487 Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 142/469 (30%), Positives = 235/469 (50%), Gaps = 43/469 (9%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI---A 61 + IVG PNVGKS+LFN L++K++A+V G+TRDR+ NG + +VDT G+ + Sbjct: 13 VTIVGRPNVGKSSLFNTLLRKRIAIVHEQCGVTRDRVAQPVSWNGYRYQLVDTGGLGVLS 72 Query: 62 DGKNCS-IAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 D KN + +++ Q ++A+ + +++ L D K GIT D + +FLRK + PII+ NK Sbjct: 73 DEKNVEFMDEKIRMQLKVAVESSDILIMLTDVKDGITELDREVCAFLRKHDKPIILAVNK 132 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 D + +L F+ IS H L I F ++ Sbjct: 133 CDNFELEDEASVFSALGFENTHAISCNHKSNLDALREDICSYFPP-----------TDEE 181 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 +E SP LRI + GRPNVGKS++ NRLLG +R++ +G TRD Sbjct: 182 DEASPD-----------------LRITLAGRPNVGKSSIANRLLGEDRVIVSDIAGTTRD 224 Query: 241 SVSISWNWKNHPIE----IFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDAT 296 +V I +++ + + DTAG++K +I +E+ ++ ++ ++++ + ++D + Sbjct: 225 AVDIPFSFDDEGESRNGLLVDTAGVKKAGKIDNLVEKFSMMRTEEAIKRSTVILFVIDMS 284 Query: 297 IPFEKQDLRIVDSVFNTGHAVVLALNKWDMV---SDKLNLLQDLRTKAIKNLPQIGDIYI 353 D +I +++ G V+ NKWD+V + K L DL +LP + I Sbjct: 285 QGVTNGDKKIANTIKAEGKPCVVIANKWDLVKAEAPKQKFLDDLE----HDLPFMRYCPI 340 Query: 354 NTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYI 413 S G G DL+ + L I + I T+ LN L L+ PPP+ + ++ Y Sbjct: 341 IFTSSVDGNGFRDLLPATLRIFEQSLVDIPTALLNQVLHDMVLRTPPPSTGKGFFKIYYA 400 Query: 414 TQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 T +++ P F+IFC N + YKR++ +R F LSGIPI + ++ Sbjct: 401 TMVKNPPAHFIIFCNKKNYCQDHYKRFIEKTVRNAFGLSGIPIEIEYRE 449 >gi|254445513|ref|ZP_05058989.1| GTPase, putative [Verrucomicrobiae bacterium DG1235] gi|198259821|gb|EDY84129.1| GTPase, putative [Verrucomicrobiae bacterium DG1235] Length = 468 Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 146/495 (29%), Positives = 240/495 (48%), Gaps = 54/495 (10%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +T+AIVG PNVGKS LFNRL K++++V + PG+TRD + + + +G + ++DT G+ Sbjct: 1 MNFTVAIVGRPNVGKSRLFNRLAGKRISIVHDMPGVTRD-IITRDLDDG--YTLMDTGGM 57 Query: 61 ADGKNCS-----IAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPII 115 + S I + Q E +I+ A+LILF++D + G+ P D + LRK +I Sbjct: 58 GLVEGMSDTPGKIVDAVEGQIEFSIDAANLILFVVDGREGLMPLDKQMAERLRKGEKRVI 117 Query: 116 IVSNKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 +V NK+DT N E Y F E +SAEH G + L + +I + + P+E Sbjct: 118 LVINKVDTEQTAINEKEFYRYGFGEPHLVSAEHGRGMNTLRREVLRI-RDEVAGPPIEEE 176 Query: 176 ENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQS 235 ++ K K L++ +GRPNVGKS+L N L+ R + Sbjct: 177 DDGK----------------------KVLKVCFIGRPNVGKSSLSNCLVQSERFIVSDVP 214 Query: 236 GITRDSVSISWNWKNHPIE-----IFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTI 290 G TRDS+ + + WK+ E + DTAG+RK +++ S+E + +S+ ++R + Sbjct: 215 GTTRDSIEMPFVWKSKRGEDWHFMLTDTAGIRKQTKLNSSVEYFSRVRSLDAIRDVDVVF 274 Query: 291 VLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGD 350 +++DA QD I VV+ +NKWD+ L ++ + Q + Sbjct: 275 MVIDAKEGPTNQDKAIAGEATKANKPVVIVVNKWDLA---LKAWENEEIDGFETEKQFRE 331 Query: 351 IY---------------INTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQ 395 + I +S + G ++ +++S ++NK I T LN+ L K Sbjct: 332 AFEKGIHRELFFVPGSPIRFVSAKEGIDVEKILLSARQLNKRQARTIPTGRLNNKLYKMA 391 Query: 396 LQNPPPTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIP 455 + P P R R+ Y + P F IFC K+ +SY+R+L+ L F L G P Sbjct: 392 ERLPAPKQDGRRFRIYYAVHTGNYPYRFKIFCNQAKKLSDSYRRFLLKGLVQEFELDGCP 451 Query: 456 IRMCFQSSKNPYIKK 470 + + NPY+++ Sbjct: 452 MVFDLVNKTNPYVQE 466 >gi|284929084|ref|YP_003421606.1| ribosome-associated GTPase EngA [cyanobacterium UCYN-A] gi|284809543|gb|ADB95248.1| ribosome-associated GTPase EngA [cyanobacterium UCYN-A] Length = 452 Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 132/465 (28%), Positives = 236/465 (50%), Gaps = 37/465 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A++G PNVGKSTL NRL K + A+V + PGITRDR+Y QA F +VDT G+ Sbjct: 6 VAVIGRPNVGKSTLVNRLAKNRQAIVHDEPGITRDRVYRQAFWRTHDFLVVDTGGLVFND 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 N + +Q A++EA + +F++D + G T D+ I ++LR++ +P+++ NK ++ Sbjct: 66 NTEFLPLIREQAMTALSEASVAVFVVDGQLGPTTGDYEIGNWLRQQKVPVLLAVNKCESP 125 Query: 124 ---RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 I F+E L E IS H GT E + L + +NK Sbjct: 126 EHGLIQAAQFWE---LGLGEPYPISGIHGNGTGEFLDKLI-----------LHLPSSNKM 171 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 + P+E + +++VGRPNVGKS+L+N LG R + +G TRD Sbjct: 172 FD--PEE----------------INVSIVGRPNVGKSSLLNAFLGEKRAIVSPIAGTTRD 213 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 + K + DTAG+R+ + E ++ ++ +++R + ++++DA Sbjct: 214 VIDTIVERKGKVYRLVDTAGIRRKKNVEYGAEFFSINRAFKAIRRADVVLLVIDAIDGVT 273 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 +QD+++ D + + G + ++ +NKWD V + + + L + + IS ++ Sbjct: 274 EQDIKLADRIIDEGRSAIIVVNKWDAVEKDAYTIYSYKKNVMNRLYFMEWANLIFISAKS 333 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKT-QLQNPPPTIFNRYNRLKYITQIQSS 419 G+ ++ + V K + RI TS +N L++ + +PP T + ++ Y TQ+ + Sbjct: 334 GQRIEKIFPLVDIAVKEHRRRINTSIINEVLEEAIRWHSPPTTRQGKQGKIYYGTQVSNQ 393 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 PP+ ++F P + ++Y+RY+ + R SG PIR+ ++ K Sbjct: 394 PPTIVLFVNDPKRFNDNYRRYIEGQFRQQIGFSGTPIRLLWKGKK 438 >gi|189345964|ref|YP_001942493.1| GTP-binding protein EngA [Chlorobium limicola DSM 245] gi|238692187|sp|B3EFY1|DER_CHLL2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|189340111|gb|ACD89514.1| small GTP-binding protein [Chlorobium limicola DSM 245] Length = 437 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 144/461 (31%), Positives = 241/461 (52%), Gaps = 36/461 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTLFNR++++K A+V + PG+TRDR G F ++DT G Sbjct: 5 IALVGRPNVGKSTLFNRILRQKSAIVDSTPGVTRDRHIMPGEWQGKQFLLMDTGGYC-AA 63 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRK--KNIPIIIVSNKMD 122 N I+ M +QT AI +A ++FL D ++G+T D I+ L++ +N I NK++ Sbjct: 64 NDVISSSMIEQTLTAIRDADCVIFLTDVRSGLTYDDLEISKLLQRTFQNKQIFFAVNKVE 123 Query: 123 TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 + + S F +SA+ G +++ +++E+ +E Sbjct: 124 SPQLTIDAESFVSTGFTRPYFLSAKDGSGVADMLD---------------DILESLPESE 168 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 + + TS +++AVVGRPNVGKS+ +N LLG NR + G TRD++ Sbjct: 169 HTDDDEDTS------------VKLAVVGRPNVGKSSFVNALLGTNRHIVSDIPGTTRDAI 216 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + K + DTAG+RK ++I +E + ++ +++ C+ +VLLDA EKQ Sbjct: 217 DSRFIRKQQEYVLIDTAGLRKRTKIDAGVEFYSSLRTEKAIERCQVAVVLLDARAGLEKQ 276 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMV---SDKLNLLQDLRTKAIKNLPQIGDIYINTISGR 359 DL+I++ V+L +NKWD++ S + +D + NL I ++I+ + Sbjct: 277 DLKIINMAEERKKGVLLLVNKWDLIEKDSKTSKIYEDDLRSHMGNLSWIPVLFISAL--- 333 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 T + L + + EI++ +I+TS LN +L++ P T + ++KY+TQI S Sbjct: 334 TKKNLYRAIDTAEEISRNRSRKISTSSLNRFLEEALSAVHPSTKSGKELKIKYMTQIDSH 393 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCF 460 P F FC P + +++++L +LR F L G+PI + F Sbjct: 394 WPVFAFFCNNPELVQSNFRKFLEKKLREQFQLDGVPISLRF 434 >gi|307299325|ref|ZP_07579126.1| ribosome-associated GTPase EngA [Thermotogales bacterium mesG1.Ag.4.2] gi|306915121|gb|EFN45507.1| ribosome-associated GTPase EngA [Thermotogales bacterium mesG1.Ag.4.2] Length = 441 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 149/467 (31%), Positives = 241/467 (51%), Gaps = 50/467 (10%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+ I+G PNVGKSTLFNRLV + A+V + PG+TRD G+ F +VDT G+ + Sbjct: 3 TVLIIGRPNVGKSTLFNRLVGGRRAIVDDLPGVTRDFTVGRVNWQQRTFQLVDTCGLFEN 62 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + ++M + T ++E LILF++D + G+T D + +LRK+ I +I V+NK++ Sbjct: 63 PENIVEEKMKEVTLELLSEGDLILFVVDGRFGLTSADQVLADYLRKQRIEVIFVANKVEN 122 Query: 124 RIAQRNFY-----EIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 +FY EI+SL F + ++ISA H L L IF+ + + H + + E+N Sbjct: 123 ---PESFYSNMGNEIFSLGFGDPIKISAAHGLNIDLLLDEIFE--RLETLGHSVHL-ESN 176 Query: 179 KRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 +E L+IA+VG+PN GKS++ N ++G R L SG T Sbjct: 177 DESE---------------------LKIAIVGKPNAGKSSIFNWIVGSPRSLVTEVSGTT 215 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRI-TESLEQKTVKKSMQSVRTCETTIVLLDATI 297 RD+V + PI DTAG+RK S++ ++E +V +++ ++ + ++++D+ Sbjct: 216 RDTVDETVEVDGIPITFIDTAGIRKKSKVKVMNVEYYSVMRAIDALERSDIMVMVIDSAD 275 Query: 298 PFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKA-IKNLPQIGDIY---- 352 QD RI G A + NK D+V ++ R KA ++ Q D+Y Sbjct: 276 GVGNQDQRIAGLAEKNGKATIAVFNKCDLVDER-------RRKALLRTFKQ--DLYFIDY 326 Query: 353 --INTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRL 410 + S TGEG+D+L+ S+ ++K R+ T LN+ LQ+ P P + ++ Sbjct: 327 SPVIFTSTLTGEGMDELIDSIKLVSKKIDLRLPTGLLNTILQRYSEGTPAPGKGKKRGKI 386 Query: 411 KYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFS-LSGIPI 456 Y +QI S PP ++ P+ E Y R + N +R+NF G PI Sbjct: 387 YYGSQIASRPPIIMLNVNDPSLFSEPYLRGIRNTIRLNFDPFEGTPI 433 >gi|261337755|ref|ZP_05965639.1| ribosome-associated GTPase EngA [Bifidobacterium gallicum DSM 20093] gi|270277209|gb|EFA23063.1| ribosome-associated GTPase EngA [Bifidobacterium gallicum DSM 20093] Length = 709 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 139/465 (29%), Positives = 220/465 (47%), Gaps = 44/465 (9%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI- 60 + +A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ A G F +VDT G Sbjct: 272 VGVLAVVGRPNVGKSTLVNRILGRRAAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWE 331 Query: 61 --ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVS 118 +G +IA Q ++A+ A ++ ++D + G+T D I LR P+ + Sbjct: 332 ADVEGIESAIAS----QAQIAVELADAVILVVDGQVGLTASDERIVRMLRASGKPVTVAV 387 Query: 119 NKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 NK D + A+ E + L E ISA H G +L +Q Sbjct: 388 NKADDQTAEYAASEFWKLGLGEPFPISAMHGRGVGDLLDAALDKLRQ------------- 434 Query: 179 KRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 +E S + R+A+VGRPNVGKS+L+N+L R + +G T Sbjct: 435 ------------AERTSGFLTPTGLRRVALVGRPNVGKSSLLNQLSHSERAVVNDLAGTT 482 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RD V + DTAG+++ E + ++ ++ E +VL DA+ P Sbjct: 483 RDPVDEIVDIDGQDYLFIDTAGIKRRQHKLSGAEYYSSLRTQAAIERSELALVLFDASQP 542 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSD----KLNLLQDLRTKAIKNLPQIGDIYIN 354 QDL+++ + + G AVVL NKWD++ D ++ L + + ++ Sbjct: 543 ISDQDLKVMSTAVDAGRAVVLVFNKWDLMDDFDRQRMERLWKTEFERVTWAQRV------ 596 Query: 355 TISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYIT 414 +S +TG + L ++ + + W RI T LN++L + Q +P P + R+ + T Sbjct: 597 NLSAKTGWHTNRLSRAMTQALESWDKRIPTGKLNAFLGRIQAAHPHPLRGGKQPRILFAT 656 Query: 415 QIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 Q S PP F+IF T I Y+RYL +LR F G PI++ Sbjct: 657 QASSRPPRFVIFAT--GFIEHGYRRYLERQLREEFGFEGSPIQIS 699 >gi|67922213|ref|ZP_00515727.1| Small GTP-binding protein domain:GTP-binding [Crocosphaera watsonii WH 8501] gi|67855916|gb|EAM51161.1| Small GTP-binding protein domain:GTP-binding [Crocosphaera watsonii WH 8501] Length = 465 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 131/467 (28%), Positives = 231/467 (49%), Gaps = 41/467 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKST NRL K + A+V + PGITRDR Y A F +VDT G+ Sbjct: 19 VAIIGRPNVGKSTFVNRLAKDRQAIVHDEPGITRDRTYRPAFWADRDFQVVDTGGLVFDD 78 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM--- 121 + +Q A+ EA + +F++D + G+T D I +LR++ +P+++ NK Sbjct: 79 ETEFLPLIREQAMAALTEASVAIFVVDGQLGLTAGDSEIADWLRQQEVPVLLAVNKCESP 138 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D + Q E + L E +S H GT EL + Y P E+ + + N Sbjct: 139 DQGLIQAA--EFWELGLGEPYPVSGIHGNGTGELLDELI-----TYLPSPDELPDREEIN 191 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 ++++GRPNVGKS+L+N LG R + SG TRD+ Sbjct: 192 ------------------------VSIIGRPNVGKSSLLNAFLGKKRAIVSPISGTTRDA 227 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 + + DTAG+R+ + E ++ ++ +++R + ++++DA Sbjct: 228 IDTVVERGEKTYRLIDTAGIRRKKNVNYGAEFFSINRAFKAIRRADVVLLVIDAIEGVTD 287 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNL--PQIGD-IYINTISG 358 QD+++ D + + G A ++ +NKWD + + + + K + L + D I+++ +SG Sbjct: 288 QDIKLADRIIDEGRAAIIVVNKWDAIDKDSYTIYEYKKKVMSRLYFMEWADLIFVSAMSG 347 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQK-TQLQNPPPTIFNRYNRLKYITQIQ 417 + E + L+ +E + + R++TS +N L++ + +PP T + R+ Y TQ+ Sbjct: 348 KRVEKIFKLVDVAVEEH---RRRVSTSVVNEVLEEAAKWHSPPTTRQGKQGRIYYGTQVS 404 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 S PP+ +F P + ++Y+RY+ + R G PIR+ ++ K Sbjct: 405 SQPPTIALFVNDPKRFNDNYRRYIERQFREQIGFLGTPIRLFWRGKK 451 >gi|328955502|ref|YP_004372835.1| ribosome-associated GTPase EngA [Coriobacterium glomerans PW2] gi|328455826|gb|AEB07020.1| ribosome-associated GTPase EngA [Coriobacterium glomerans PW2] Length = 445 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 145/469 (30%), Positives = 242/469 (51%), Gaps = 50/469 (10%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTL NRL + A+V G+TRDR Y A G F IVDT GI K Sbjct: 5 VAVVGRPNVGKSTLVNRLAQTSEAIVHETRGVTRDRSYHDADWAGREFTIVDTGGIESLK 64 Query: 65 NCSI-AKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + + + + DQ A EA +IL ++D + G+T D + LR+ + P+ ++ NK+D Sbjct: 65 SEDVFSGSIRDQALAAAEEAAVILMVVDGRTGVTEEDETVARLLRRVDKPVFLLVNKLDN 124 Query: 124 --RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 R +R +E SL + + ISA H GT +L + + P+ E Sbjct: 125 PDREGER-LWEYSSLGIGDPLPISALHGHGTGDLLDEVVALL----PDEERE-------- 171 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 V L +A++GRPN GKS+L N+++G R + +G TRD+ Sbjct: 172 ---------------VDPFPDALGVAIIGRPNAGKSSLFNKMIGSERSIVSDVAGTTRDA 216 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 + + DTAG+RK S + E++E ++ + ++++ + ++++D++I + Sbjct: 217 IDTIVRRDARLYRMVDTAGIRKKSNVYENVEYYSMVRGLRAIDRADVALLVVDSSIGVTE 276 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQ-------IGDIYIN 354 QD ++ + G AVV+ LNKWD + + + LR + + ++ + G + + Sbjct: 277 QDQKVAALAIDRGCAVVVLLNKWDTLGE-----ERLREQVMASVERRFTFATWAGVLRTS 331 Query: 355 TISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFN--RYNRLKY 412 ++GR E + M+ V E + +T+I+TS LN +L T L+ T+ + R R+ Y Sbjct: 332 ALTGRAVEKVWG-MIDVAE--RARETKISTSRLNQFL--TDLREFGHTVVDGKRRLRMHY 386 Query: 413 ITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 +TQ + PP+F +F I +SY+RY+ NR+R F G PIR+ F+ Sbjct: 387 MTQTGTKPPTFTLFVNHVELISDSYRRYIENRMRAKFGFGGTPIRLRFR 435 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 27/60 (45%), Positives = 35/60 (58%), Gaps = 1/60 (1%) Query: 202 KPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGM 261 KP+ +AVVGRPNVGKSTL+NRL + + G+TRD +W I DT G+ Sbjct: 2 KPI-VAVVGRPNVGKSTLVNRLAQTSEAIVHETRGVTRDRSYHDADWAGREFTIVDTGGI 60 >gi|239616622|ref|YP_002939944.1| small GTP-binding protein [Kosmotoga olearia TBF 19.5.1] gi|259645881|sp|C5CIV1|DER_KOSOT RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|239505453|gb|ACR78940.1| small GTP-binding protein [Kosmotoga olearia TBF 19.5.1] Length = 442 Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 142/465 (30%), Positives = 235/465 (50%), Gaps = 29/465 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+ IVG PNVGKSTLFNRLV + A++ + PG+TRD ++G+ F +VDT G+ D Sbjct: 3 TVLIVGRPNVGKSTLFNRLVGGRRAIIDDQPGVTRDFVFGRVFWQHKSFEVVDTCGLFDS 62 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 I ++M + T ++E L+LF++D + G+T D I LRK +I+V+NK++ Sbjct: 63 PKDIIEEKMKEVTLALLSEGDLLLFVVDGRKGLTSADMDIAETLRKSKKRVILVANKVEN 122 Query: 124 --RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 + E+YSL F E + ISAEH L L I K ++ H L+ Sbjct: 123 VDKFTLEVLPELYSLGFGEPIPISAEHGLNIDVLLEKIIKTLEEA--GHLLDY------E 174 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 E ++N L++A++G+PN GKS+L N ++G +R L G TRD Sbjct: 175 PEKEEDN---------------LKVAIIGKPNAGKSSLFNSIVGSDRSLVTEIPGTTRDM 219 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRI-TESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 V + P+ DTAGMR+ S++ +++E +V +++ ++ + I+++DAT+ Sbjct: 220 VDETIEIDGMPVTFIDTAGMRRKSKVGVKNVEYYSVMRAVDAIERSDICILVIDATLGIS 279 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 QD RI V G ++ NK D++++K + L + + L I + S Sbjct: 280 NQDQRIAGLVEKRGKGIITVFNKSDLLNEKHK--ESLLSSFERELYFIDYSPVVFTSATE 337 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G G+D+L+ + + + RI T LN+ + + L PP N+ ++ Y QI + P Sbjct: 338 GFGIDELLDKLFLVAEKIDLRIPTGLLNNLISRYTLSTPPVGRKNKKAKIYYAAQIDTRP 397 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFS-LSGIPIRMCFQSSK 464 P ++ P E Y R + + +R+N G PI + + K Sbjct: 398 PLIMLKVNDPALFTEPYLRGIRSTIRMNIDPFEGTPIFIKLRRKK 442 >gi|17227979|ref|NP_484527.1| GTP-binding protein EngA [Nostoc sp. PCC 7120] gi|26006724|sp|Q8YZH7|DER_NOSS1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|17129828|dbj|BAB72441.1| GTP binding protein [Nostoc sp. PCC 7120] Length = 453 Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 137/468 (29%), Positives = 235/468 (50%), Gaps = 43/468 (9%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKSTL NRL ++ A+V + PG+TRDR Y A + F +VDT G+ Sbjct: 6 VAIIGRPNVGKSTLVNRLAGEQTAIVHDEPGVTRDRTYLPAYWSDREFQVVDTGGLVFND 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 + + Q A++EA +F+++ + G D I +LR++ +P+ + NK ++ Sbjct: 66 DTEFLPLIRQQALAALHEASAAIFVVNGQTGPNSADEEIAEWLRQQPVPVFLAVNKCESP 125 Query: 124 ---RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 I F+E L E ISA H GT EL + ++ K P LE ENN+ Sbjct: 126 DQGSIQASEFWE---LGLGEPYPISAIHGNGTGEL---LDELIKHLPPVTELE--ENNE- 176 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 ++IA++GRPNVGKS+L+N G R++ SG TRD Sbjct: 177 -----------------------IKIAIIGRPNVGKSSLLNAFAGEERVIVSPISGTTRD 213 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 ++ + DTAG+RK I E ++ ++ +++R + ++++DA Sbjct: 214 AIDTFIERDGQNYRLIDTAGIRKKKSIDYGTEFFSINRAFKAIRRADVVLLVIDALDGVT 273 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRT--KAIKNLPQIGD-IYINTIS 357 +QD ++ + + G A V+ +NKWD V + D +A + + D IY++ + Sbjct: 274 EQDQKLAGRILDEGKACVVVVNKWDAVEKDSYTIYDYEKNLEARLHFTEWADTIYVSAV- 332 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKT-QLQNPPPTIFNRYNRLKYITQI 416 TG+ ++ ++ V + N+ K R++TS +N L+ + +PP + R R+ Y TQ+ Sbjct: 333 --TGQRVEKILELVTKANEEHKRRVSTSVINEVLEDAVRWHSPPTSRGGRQGRIYYGTQV 390 Query: 417 QSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 + PP+ +F + ++Y+RY+ + R G PIR+ ++S K Sbjct: 391 STQPPTIALFVNEAKRFNDNYRRYIERQFRQQLGFKGTPIRLLWRSKK 438 >gi|118468050|ref|YP_888037.1| GTP-binding protein EngA [Mycobacterium smegmatis str. MC2 155] gi|118169337|gb|ABK70233.1| GTP-binding protein EngA [Mycobacterium smegmatis str. MC2 155] Length = 471 Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 152/463 (32%), Positives = 233/463 (50%), Gaps = 49/463 (10%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA-DG 63 +AIVG PNVGKSTL NR++ ++ AVV + PG+TRDR+ A G F + DT G D Sbjct: 38 LAIVGRPNVGKSTLVNRILGRREAVVQDVPGVTRDRVSYDANWLGRRFVVQDTGGWEPDA 97 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 K + + + DQ +A+ A ++ ++D+ G T D A LR+ P+ + +NK+DT Sbjct: 98 KG--LQQLVADQALVAMRTADAVILVVDAVVGATAADEAAAKLLRRSGKPVFLAANKVDT 155 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + ++SL E ISA H G ++L + E+ Sbjct: 156 ERGEADAASLWSLGVGEPHPISAMHGRGVADLLDTVM---------------------EK 194 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 P+ + + G S P R+A+VG+PNVGKS+L+NRL G +R + +G T D V Sbjct: 195 LPEVSEVATGGS-----GGPRRVALVGKPNVGKSSLLNRLAGDHRSVVHDMAGTTVDPVD 249 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRT------CETTIVLLDATI 297 DTAG+R+ + Q T + SVRT E IVL+DA+ Sbjct: 250 SLIELGGKTWRFVDTAGLRR------KVGQATGHEFYASVRTHGAIDAAEVVIVLIDASQ 303 Query: 298 PFEKQDLRIVDSVFNTGHAVVLALNKWDMV-SDKLNLLQDLRTKAIKNLPQIGDIYINTI 356 P +QD R++ V G A+VLA NKWD+V D+ LL + + + I I+ + Sbjct: 304 PLTEQDQRVLSMVIEAGRALVLAFNKWDLVDEDRRYLLSREIERELVQVQWAPRINISAL 363 Query: 357 SGRTGEGLDDLMVSVLEIN-KLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQ 415 +GR + L V LE + W TRI+T LN++L++ PPP + R+ + TQ Sbjct: 364 TGRAVQKL----VPALETSLTSWDTRISTGRLNTFLKEVVAATPPPVRGGKQPRILFATQ 419 Query: 416 IQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 + PP+F++F + + Y+R+L +LR F G PIR+ Sbjct: 420 AATRPPTFVLFTS--GFLEAGYRRFLERKLRETFGFEGSPIRV 460 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 53/173 (30%), Positives = 85/173 (49%), Gaps = 12/173 (6%) Query: 201 SKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAG 260 + P +A+VGRPNVGKSTL+NR+LG + G+TRD VS NW + DT G Sbjct: 33 APPPVLAIVGRPNVGKSTLVNRILGRREAVVQDVPGVTRDRVSYDANWLGRRFVVQDTGG 92 Query: 261 MRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLA 320 ++ L+Q +++ ++RT + I+++DA + D + +G V LA Sbjct: 93 WEPDAK---GLQQLVADQALVAMRTADAVILVVDAVVGATAADEAAAKLLRRSGKPVFLA 149 Query: 321 LNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 NK D + + +L +G + IS G G+ DL+ +V+E Sbjct: 150 ANKVDTERGEAD---------AASLWSLGVGEPHPISAMHGRGVADLLDTVME 193 >gi|303327492|ref|ZP_07357933.1| ribosome-associated GTPase EngA [Desulfovibrio sp. 3_1_syn3] gi|302862432|gb|EFL85365.1| ribosome-associated GTPase EngA [Desulfovibrio sp. 3_1_syn3] Length = 452 Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 141/472 (29%), Positives = 240/472 (50%), Gaps = 45/472 (9%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGV-IFNIVDTAGIADG 63 I +VG PNVGKSTLFNRL++ A+ + PG+TRDR+ G + F IVDT GI Sbjct: 8 IVLVGRPNVGKSTLFNRLIRSNRAITHDRPGVTRDRMEGVVRRKDLPSFGIVDTGGITLD 67 Query: 64 KNCSIA----------KQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIP 113 + ++ + + Q E A+ A + F++D + G+ P D + + +R+ +P Sbjct: 68 AHAAVTEGPEGIRGFERDILAQAEAALAGAAAVAFVVDGRDGLLPLDEHLAAHIRRMGLP 127 Query: 114 IIIVSNKMDTRIAQR-NFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPL 172 + V NK+D + E +SL F ++ +SAEH + L + + + Sbjct: 128 TLCVVNKVDGEEREDLQMAEFHSLGFP-LLPVSAEHGYNINALCEDLAALLPE------- 179 Query: 173 EMIENNKRNEESPKENITSEGKSSVKNISKP-LRIAVVGRPNVGKSTLINRLLGYNRLLT 231 +V+ + P LR+A++GRPN GKS+LIN L G R++ Sbjct: 180 ----------------------GAVEPPAPPALRLAMLGRPNAGKSSLINALAGEERMIV 217 Query: 232 GSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIV 291 +G TRDSV + + DTAG+R+ +RIT+S+E+ +V +++S + T++ Sbjct: 218 SDVAGTTRDSVDVRFRRDGQDYVFVDTAGVRRRTRITDSVEKYSVNAAIKSSTKADVTLL 277 Query: 292 LLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDI 351 LDAT +QD R++D + ++ +NK D++ + + L G + Sbjct: 278 TLDATEGVSQQDKRLMDMLDTRKTPFMVLINKCDLIPAAALAAL--KKNITETLAFCGHV 335 Query: 352 YINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLK 411 I +S RTG GL ++ +I++ + RI T LN +++ ++ PP + + Sbjct: 336 PILAVSARTGTGLKKILPLARKIHEECQVRIPTGRLNRAMEEVLTRHQPPVVKRVRAKFF 395 Query: 412 YITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSS 463 Y+TQ +++PP+F+ F + ++PESY RYL LR F +S P+R+ +SS Sbjct: 396 YLTQAETAPPTFVFFVSDAERVPESYTRYLERALRKLFGISHAPMRIHLRSS 447 >gi|227498500|ref|ZP_03928646.1| small GTP-binding protein [Acidaminococcus sp. D21] gi|226903958|gb|EEH89876.1| small GTP-binding protein [Acidaminococcus sp. D21] Length = 403 Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 129/426 (30%), Positives = 218/426 (51%), Gaps = 32/426 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFN ++++V + PG+TRDRLY +A F +VDT GI Sbjct: 6 VAIVGRPNVGKSTLFNIFADSRISIVEDTPGVTRDRLYAEAEWLDRRFMMVDTGGIEIAN 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 SIA + +Q ++AI EA +ILF+ D++ G+T D + +R P+++ NK DT Sbjct: 66 TDSIAVSIREQAKIAIKEADVILFVCDARTGVTTEDQEVAKLIRMAQKPVVLAVNKADTP 125 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + YE Y+L E ISA + L +L + F + Sbjct: 126 TQELEAYEFYNLGIGEPYMISASNRLNLGDLLDAVVSHFPDED----------------- 168 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 +S + +++A++GRPNVGKS++ N ++G R + +G TRD++ + Sbjct: 169 ---------ESDDDDHDDVIKVAIIGRPNVGKSSIFNDIIGQTRSIVSDVAGTTRDAIDV 219 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 DTAGMR+ +I E +E+ ++ +++++V + +++LDA +QD Sbjct: 220 PVMKDGQTYLFIDTAGMRRKGKIDEPIEKYSIIRTLRAVDRSDVVLMVLDAVDGVTEQDK 279 Query: 305 RIVDSVFNTGHAVVLALNKWDMVS-DKLNLLQDLRT--KAIKNLPQIGDIYINTISGRTG 361 +I G +VL +NKWD+ D+++ + T K + +P +Y++ ++ + Sbjct: 280 KIAGYAHEAGKGIVLVVNKWDLYQKDEMSTVHYTETIRKELIFMPYANVVYVSALTQQRI 339 Query: 362 EGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 L DL+ E N + RI+TS LN + N PP ++ ++ Y TQ++ PP Sbjct: 340 SRLPDLIKDAAEANAM---RISTSVLNQVVTDAVAMNQPPMEKGKHLKILYATQVKVKPP 396 Query: 422 SFLIFC 427 +F+IF Sbjct: 397 TFVIFL 402 >gi|311694388|gb|ADP97261.1| GTP-binding protein EngA [marine bacterium HP15] Length = 452 Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 136/451 (30%), Positives = 229/451 (50%), Gaps = 33/451 (7%) Query: 22 LVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNCSIAKQMNDQTELAIN 81 + + + A+V + PG+TRDR YG+ G F ++DT G+ G + +M Q+ A+ Sbjct: 1 MTRSRDALVADFPGLTRDRKYGEGSYEGQRFIVIDTGGLT-GDEQGLDLEMARQSMQAVE 59 Query: 82 EAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQRNFYEIYSLDFKEI 141 EA ++LFL+D +AG+T D I LR+ +V NK D + + YSL F+ Sbjct: 60 EADIVLFLVDGRAGLTAGDELIADSLRRSGKQAHLVVNKTDGQDPDIAASDFYSLGFEST 119 Query: 142 VEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEESPKENITSEGKSSVKNIS 201 I+A H+ G + LE++ ++ E G Sbjct: 120 FLIAASHNRGIRSM----------------LEILLPSEEEREEEDRADRYPG-------- 155 Query: 202 KPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGM 261 +RI VVGRPNVGKSTL+NR+LG +R++ G TRDSV I + + + DTAG+ Sbjct: 156 --IRIGVVGRPNVGKSTLVNRMLGEDRVVVYDMPGTTRDSVYIPYERQGSQYTLIDTAGV 213 Query: 262 RKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLAL 321 R+ ++E +E+ ++ K++Q++ I+++DA QDL ++ V + G ++V+A+ Sbjct: 214 RRRKNVSEVVEKFSIIKTLQAIDDAHVVILVIDAREGLVDQDLHLIGFVLDAGRSLVIAV 273 Query: 322 NKWDMV--SDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWK 379 NKWD + D+ + + ++ + + L YI+ + G G+ + SV + Sbjct: 274 NKWDGMDPEDRARVKEQVQRR-LDFLDYADKHYISALH---GSGVGVMYESVQACYESAM 329 Query: 380 TRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKR 439 + T+ L + LQ Q+ PP + R +L+Y Q S+PP ++ + +P +YKR Sbjct: 330 AKWPTNRLTAILQDAIAQHQPPMVHGRRIKLRYAHQGGSNPPVIVVHGNQVDSLPGAYKR 389 Query: 440 YLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 YL N R ++G PIR F+S +NP+ K Sbjct: 390 YLENTFRKVLKVTGSPIRFEFKSGENPFAGK 420 Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 57/193 (29%), Positives = 97/193 (50%), Gaps = 12/193 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 I +VG PNVGKSTL NR++ + VV + PG TRD +Y G + ++DTAG+ K Sbjct: 158 IGVVGRPNVGKSTLVNRMLGEDRVVVYDMPGTTRDSVYIPYERQGSQYTLIDTAGVRRRK 217 Query: 65 NCS--IAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 N S + K +T AI++AH+++ +ID++ G+ D + F+ ++I NK D Sbjct: 218 NVSEVVEKFSIIKTLQAIDDAHVVILVIDAREGLVDQDLHLIGFVLDAGRSLVIAVNKWD 277 Query: 123 -------TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQ---KYPNHPL 172 R+ ++ + LD+ + ISA H G ++ + ++ K+P + L Sbjct: 278 GMDPEDRARVKEQVQRRLDFLDYADKHYISALHGSGVGVMYESVQACYESAMAKWPTNRL 337 Query: 173 EMIENNKRNEESP 185 I + + P Sbjct: 338 TAILQDAIAQHQP 350 >gi|152967059|ref|YP_001362843.1| GTP-binding protein EngA [Kineococcus radiotolerans SRS30216] gi|151361576|gb|ABS04579.1| small GTP-binding protein [Kineococcus radiotolerans SRS30216] Length = 496 Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 131/427 (30%), Positives = 216/427 (50%), Gaps = 33/427 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI---A 61 +A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ A G F +VDT G A Sbjct: 62 LAVVGRPNVGKSTLVNRIIGRREAVVEDVPGVTRDRVAYPANWAGRDFTLVDTGGWEAKA 121 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 +G N ++A DQ ELAI A ++F++D G T D + LR+ P+ +++NK+ Sbjct: 122 EGLNLAVA----DQAELAIELADAVMFVVDGTVGATASDEQVVRLLRRSGRPVTLIANKV 177 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D + E++ L E +SA H GT + K Sbjct: 178 DGPRQEALATELWGLGLGEPHPVSALHGRGTGDALDAAVKTLPA---------------- 221 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 +++ G + P R+A++GRPNVGKS+++N+L G R++ +G TRD Sbjct: 222 -------VSAVGGGLIPE-GGPRRVALLGRPNVGKSSMLNKLAGSERVVVHPTAGTTRDP 273 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 V DTAG+R+ +T+ + ++ ++ E +VL+DA++P + Sbjct: 274 VDEIIELGGRTWRFVDTAGIRRRVHLTKGADFYASLRTQTALEKAEVAVVLVDASVPIAE 333 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTG 361 QD+R++ +V +G A+V+A NKWD+ ++ L + K L QI +S +TG Sbjct: 334 QDIRVISTVVESGRALVVAYNKWDLTDEERR--HYLEREIEKELVQIPWAPRVNVSAQTG 391 Query: 362 EGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 ++ L+ ++ W+ RI T LN++L +P P + R+ + TQ + PP Sbjct: 392 RHMERLVPAIDTALASWEMRIPTGRLNAFLGSIVAAHPHPVRGGKQPRILFGTQASTRPP 451 Query: 422 SFLIFCT 428 F+IF + Sbjct: 452 RFVIFAS 458 Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 50/171 (29%), Positives = 79/171 (46%), Gaps = 14/171 (8%) Query: 165 QKYPNHPLEMIENNKR-----NEESPK-----ENITSEGKSSVKNISKPLRIAVVGRPNV 214 + P HP E +E R + SP+ E+ EG+ P+ +AVVGRPNV Sbjct: 12 ESTPQHPDENVERALRVGLEDYDLSPEDVQLLESDGLEGEEDAPTGPLPV-LAVVGRPNV 70 Query: 215 GKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQK 274 GKSTL+NR++G + G+TRD V+ NW + DT G + E L Sbjct: 71 GKSTLVNRIIGRREAVVEDVPGVTRDRVAYPANWAGRDFTLVDTGGWEAKA---EGLNLA 127 Query: 275 TVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 ++ ++ + + ++D T+ D ++V + +G V L NK D Sbjct: 128 VADQAELAIELADAVMFVVDGTVGATASDEQVVRLLRRSGRPVTLIANKVD 178 >gi|291301883|ref|YP_003513161.1| small GTP-binding protein [Stackebrandtia nassauensis DSM 44728] gi|290571103|gb|ADD44068.1| small GTP-binding protein [Stackebrandtia nassauensis DSM 44728] Length = 465 Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 147/464 (31%), Positives = 237/464 (51%), Gaps = 43/464 (9%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTL NRL+ ++ AVV + PG+TRDR+ A NG F +VDT G + Sbjct: 25 VAVVGRPNVGKSTLVNRLIGRRQAVVEDVPGVTRDRIAYDAQWNGRKFTVVDTGGW-EPD 83 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 A + Q E AI + +I+ ++D+ G T D A L + P+I+V+NK+D+ Sbjct: 84 AVGRAAAIAAQAEQAIAASDVIVLVVDATVGATDVDDAAARVLHRAAKPVILVANKVDSV 143 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 A+ + +++S+ E ISA H G+ +L +I E Sbjct: 144 RAEADATQLWSMGLGEPHPISALHGRGSGDLLDIILDALP------------------EL 185 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P + +EG P R+A+VG+PNVGKS+L+NRL G +R++ S +G T D V Sbjct: 186 PSVDDDTEGG--------PRRVALVGKPNVGKSSLLNRLAGEDRVVVDSVAGTTVDPVDS 237 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + DTAG+RK + E ++ +V E +VLLDA+ P +QD Sbjct: 238 LIELGGETWQFVDTAGLRKRVKQASGTEYYASLRTQSAVEAAEVAVVLLDASEPISEQDQ 297 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSD------KLNLLQDLRTKAIKNLPQIGDIYINTISG 358 R++ V +G A+V+A NKWD+V + + +DLR ++ P++ I+ +G Sbjct: 298 RVITQVVESGRALVIAFNKWDLVDEDRRFQISREIDRDLRR--VQWAPRVN---ISAATG 352 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 R+ L + + LE W+ R+ T LN W+ +P P + ++ ++TQ Sbjct: 353 RSVAKLTPFLHTALE---GWEQRVPTGELNQWVAALVAAHPHPIRGGKAPKVLFMTQASV 409 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 PP F++F + ++ Y RY+ RLR +F +G PI + ++ Sbjct: 410 RPPKFVVFTS--GQLDPQYLRYIERRLREDFGFAGSPIVLSVKA 451 >gi|193212091|ref|YP_001998044.1| GTP-binding protein EngA [Chlorobaculum parvum NCIB 8327] gi|238692612|sp|B3QLF4|DER_CHLP8 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|193085568|gb|ACF10844.1| small GTP-binding protein [Chlorobaculum parvum NCIB 8327] Length = 438 Score = 217 bits (552), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 141/458 (30%), Positives = 226/458 (49%), Gaps = 29/458 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTLFNR++++K A+V PG+TRDR G F ++DT G A + Sbjct: 5 IALVGRPNVGKSTLFNRILRQKSAIVDPTPGVTRDRHINPGEWQGKQFLLMDTGGYAP-E 63 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRK--KNIPIIIVSNKMD 122 N S++ M DQT AI +A I+F++D+++G+T D I L++ + I NK+D Sbjct: 64 NDSLSVAMLDQTMRAIADADAIIFMVDARSGLTYLDLDIAKILKQTFSDKKIFFAINKVD 123 Query: 123 TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 + F E ISA G +++ I Sbjct: 124 NPQLALEAAAMVRSGFTEPYLISARDGGGVADMLDDIL---------------------- 161 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 E + + +++AV+GRPNVGKS+L+N LLG +R + G TRD++ Sbjct: 162 ----ETLPCPESEDEELDDDSIKLAVLGRPNVGKSSLVNALLGTDRQIVSDVPGTTRDAI 217 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + DTAG+RK ++I +E + ++ +++ C+ +VLLDA + E Q Sbjct: 218 DSVLKRNGKEYILIDTAGLRKRTKIDPGIEYYSSLRTERAIERCQVALVLLDAQLGLESQ 277 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D++I+ V++ +NKWD+V + + L IG I I S T + Sbjct: 278 DMKIIHMAIERKKGVLILVNKWDLVEKDSKTSKKFTDNLMMQLGNIGYIPIIFTSALTKK 337 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 + + +I + +I+TS LN +LQ+ P + + ++KY+TQI++ P Sbjct: 338 NCYRAIDTAAQIAINRRQKISTSNLNRFLQEALAMRHPASKSGKELKIKYMTQIEAGHPV 397 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCF 460 F FC P + ++KR+L RLR +F G+PI M F Sbjct: 398 FAFFCNDPQLLENNFKRFLEKRLRESFDFEGLPITMRF 435 >gi|91069954|gb|ABE10882.1| GTP-binding protein [uncultured Prochlorococcus marinus clone ASNC2259] Length = 457 Score = 217 bits (552), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 134/469 (28%), Positives = 233/469 (49%), Gaps = 31/469 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAI+G PNVGKSTL NRL + A+V + PG+TRDR Y A G F IVDT G+ Sbjct: 5 TIAIIGRPNVGKSTLVNRLCQSNDAIVFDKPGVTRDRTYQNASWGGKEFQIVDTGGLVFD 64 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD- 122 + ++ Q LA+ E+ L L ++D G+T D +I +LR + I+ NK + Sbjct: 65 DDSEFLPEIRTQVFLALEESSLALLVVDGNQGVTDGDLSIAKWLRNSSCKTIVAVNKCES 124 Query: 123 TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 T + E + L E + +SA H GT +L ++ E+ ENN +++ Sbjct: 125 TTLGISLASEFWKLGLGEPIPVSAIHGSGTGDLLDLVI-----------CELPENNIQDD 173 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 E + + ++++GRPNVGKS+L+N + G R + SG T DS+ Sbjct: 174 E------------------EKIMMSIIGRPNVGKSSLLNSICGEKRAIVSDISGTTTDSI 215 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 ++ +I DTAG+R+ + E + ++ +S+ + ++++DA Q Sbjct: 216 DTLIKKGDNHWKIIDTAGIRRKKNVKYGAEFFGINRAFKSIDRSDVCVLVIDAVDGVTDQ 275 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D ++ + G A ++ +NKWD+V + + + + L + + IS TG+ Sbjct: 276 DQKLAGRIEEQGRACIIVVNKWDLVEKNSSTIYQVEKELRSKLYFLHWSKMIFISALTGQ 335 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKT-QLQNPPPTIFNRYNRLKYITQIQSSPP 421 +D++ L + R+TTS +N L+++ ++PP + RL Y TQ+++ PP Sbjct: 336 RVDNIFEHALNAVNQHRRRVTTSVVNEVLKESISWKSPPTKRSGKQGRLYYGTQVKNKPP 395 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +F +F P +Y+RY+ ++R+N G P+ + ++ K + K Sbjct: 396 TFTLFVNDPKLFGITYRRYIEKQIRVNLGFEGTPLILLWRGKKQRALNK 444 >gi|311087969|gb|ADP68048.1| GTP-binding protein EngA [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 441 Score = 217 bits (552), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 158/465 (33%), Positives = 249/465 (53%), Gaps = 39/465 (8%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAII--NGVIFNIVDTA 58 MI I ++G NVGKSTLFN L K + A+V N+PGITRDR YG + N I ++DTA Sbjct: 1 MIPIIVLIGRTNVGKSTLFNVLTKTRDALVANYPGITRDRQYGYCKLQSNKKII-LIDTA 59 Query: 59 GIADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVS 118 G+ D K I KQ QT +AI EAHLILFL++++ G+ P ++ I+ +RK I+V Sbjct: 60 GL-DIKLNEIEKQAQAQTLIAIKEAHLILFLVNARDGLMPQEYEISKNIRKYQKKTILVI 118 Query: 119 NKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL-HSVIFKIFKQKYPNHPLEMIEN 177 NK+D E YSL F++I +ISA H+ G + L + + +K+ ++ EN Sbjct: 119 NKIDGINEASKINEFYSLGFEKIQKISASHNQGINTLINRYLIPWISEKFKK---KITEN 175 Query: 178 NKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGI 237 ++ E +K I+ +++A +GRPNVGKSTLIN +L R++T + G Sbjct: 176 LYKDTE-------------LKKIA--IKVAFIGRPNVGKSTLINGILKEERMITSNTPGT 220 Query: 238 TRDSVS--ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDA 295 T DS+S I +N++N+ + DTAG K + ++ ++ K++Q++ ++++DA Sbjct: 221 TLDSISTPIKYNYENYT--LIDTAGASKKKKKINDFQRFSIIKTLQTIEKSNVILLIIDA 278 Query: 296 TIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNL--PQIGDIY- 352 ++ QDL + D + ++G +V+ +NK D L + K IK L ++ +Y Sbjct: 279 SLQTCHQDLSLADFIIHSGKGIVVVVNKCD-------LFNSVELKKIKELIKSKLKFLYF 331 Query: 353 --INTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRL 410 I+ IS +G+ L S+ E + K +I+TS L + ++ PP I R +L Sbjct: 332 SKIHFISALYKKGIFQLFKSIKESYEDSKRKISTSTLIKTMHIAIKKHQPPIIKGRRIKL 391 Query: 411 KYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIP 455 KY S+PP +I + YKRYLIN + G P Sbjct: 392 KYAHLGSSNPPKIIIHGNQVKYLSLPYKRYLINFFYKTLKIKGTP 436 >gi|325475284|gb|EGC78469.1| GTP-binding protein EngA [Treponema denticola F0402] Length = 476 Score = 217 bits (552), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 146/470 (31%), Positives = 230/470 (48%), Gaps = 43/470 (9%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI---- 60 IAIVG PNVGKSTLFNR ++K+ ++ PG+TRD + QAI+NG+ +VDT G Sbjct: 33 IAIVGRPNVGKSTLFNRFLRKRRSITDPTPGVTRDPVEAQAIVNGLPVMLVDTGGFKLTR 92 Query: 61 -ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGI-TPYDHAITSFLRKKNIPIIIVS 118 D +I + + ++T + +A IL L+D AG+ T D FLR +++ Sbjct: 93 SGDAFEDTIDELVMEKTISTLKKADRILLLLD--AGLATAEDEEFIQFLRPYFNKLVVAV 150 Query: 119 NKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 NK + Y YS FK + ISAEH SEL L + Sbjct: 151 NKTEGGRLMAEAYNYYSYGFKSLTCISAEHGDNISELA-------------EELTAGLDF 197 Query: 179 KRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 + EE +++ +RI +VG+PN GKSTL N L G + + + +G T Sbjct: 198 SKVEELEEDDT--------------IRITIVGKPNTGKSTLANYLTGSSASIISNVAGTT 243 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RD V +++KN I DTAG+R+ +++ E +E +V ++++S+ + L+D Sbjct: 244 RDIVEGEFSYKNKKFLIQDTAGIRRKAKVNEDIEYYSVVRAIKSMDNADIVFHLIDVQEG 303 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 +QD +I+ N G V+ LNKWD++ +D + ++ + IS Sbjct: 304 LTEQDKKIIVQATNRGLGVIFVLNKWDLMEQTKKAFKDEEERIKVMFGKMDYAPVLAISA 363 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLN----SWLQKTQLQNPPPTIFNRYNRLKYIT 414 G G+ +L+ + +++ + +I TS LN WLQ PPP +YI Sbjct: 364 NEGTGIKELLNTAVKMFEQLNKKIETSALNIALKDWLQAA----PPPQGRQTAFTFRYIV 419 Query: 415 QIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 Q S PP FL+F P+ + ESY RY+ N++R + IPI + + S+ Sbjct: 420 QTGSRPPEFLLFSNRPDYVTESYMRYIQNKIRSDLGFEMIPILLKVKGSR 469 >gi|186682120|ref|YP_001865316.1| GTP-binding protein EngA [Nostoc punctiforme PCC 73102] gi|238691263|sp|B2J1L2|DER_NOSP7 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|186464572|gb|ACC80373.1| small GTP-binding protein [Nostoc punctiforme PCC 73102] Length = 456 Score = 216 bits (551), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 135/468 (28%), Positives = 230/468 (49%), Gaps = 43/468 (9%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKSTL NRL ++ A+V + PG+TRDR Y A NG F +VDT G+ Sbjct: 6 VAIIGRPNVGKSTLVNRLAGEQTAIVHDEPGVTRDRTYMPAFWNGREFLVVDTGGLVFND 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM--- 121 + + Q A+ EA +F++D + G T D I ++R++ +P+++ NK Sbjct: 66 DTEFLPLIRQQAMTALAEACAAIFVVDGQTGPTSADQEIAEWMRQQRVPVLLAVNKCESP 125 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D + Q E + L E ISA H GT EL E++ + Sbjct: 126 DQGLMQAA--EFWELGLGEPYPISAIHGSGTGELLD---------------ELVNHIPAV 168 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 E+ P+ N +++A+VGRPNVGKS+L+N +G R + SG TRD+ Sbjct: 169 EDIPETN--------------EIKVAIVGRPNVGKSSLLNAFVGEERAIVSPISGTTRDA 214 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 + + DTAG+RK I E ++ ++ +++R + +++LDA + Sbjct: 215 IDTVIERDGQTYRLIDTAGIRKKKHIEYGTEFFSINRAFKAIRRADVVLLVLDAVDGVTE 274 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGD----IYINTIS 357 QD ++ + G A ++ +NKWD V + D K +++ + I+++ +S Sbjct: 275 QDQKLAGRIIEEGRACIIVVNKWDAVEKDSYTIYDYE-KTLQSRLHFTEWAETIFVSALS 333 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWL-QKTQLQNPPPTIFNRYNRLKYITQI 416 G+ E + +L+ + E + K R++TS +N L +PP + R ++ Y TQ+ Sbjct: 334 GQRVEKILELVKTAAESH---KRRVSTSVINEVLTDAVSWHSPPASRGGRQGKIYYGTQV 390 Query: 417 QSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 S PP+ +F + ++Y+RY+ + R G PI + ++S K Sbjct: 391 SSQPPTIALFVNDSKRFNDNYRRYIERQFRQQLGFKGTPIILLWRSKK 438 >gi|294786930|ref|ZP_06752184.1| ribosome-associated GTPase EngA [Parascardovia denticolens F0305] gi|315226567|ref|ZP_07868355.1| ribosome-associated GTPase EngA [Parascardovia denticolens DSM 10105] gi|294485763|gb|EFG33397.1| ribosome-associated GTPase EngA [Parascardovia denticolens F0305] gi|315120699|gb|EFT83831.1| ribosome-associated GTPase EngA [Parascardovia denticolens DSM 10105] Length = 734 Score = 216 bits (551), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 144/465 (30%), Positives = 226/465 (48%), Gaps = 40/465 (8%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI- 60 + IA++G PNVGKSTL NR++ + A+V + PG+TRDR+ +A G F +VDT G Sbjct: 284 VGVIAVIGRPNVGKSTLVNRVLGHRAAIVEDTPGVTRDRVSYEAEWAGHDFKLVDTGGWE 343 Query: 61 --ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVS 118 +G + +IA DQ +A+N A I+F++D G+T D I S LR P+ + Sbjct: 344 ADVEGIDSAIA----DQASIAMNMADAIIFVVDGTVGLTQTDDRIASLLRSSGKPVTVAV 399 Query: 119 NKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 NK D++ A+ E + L E + ISA H G +L Sbjct: 400 NKADSQAAEYAAAEFWKLGLGEPLPISALHGRGVGDLLDAAV------------------ 441 Query: 179 KRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 N S E +T G + ++ R+A++GRPNVGKS+L+N+L NR + +G T Sbjct: 442 --NSLSTVEKLT--GSLAASDLR---RVALIGRPNVGKSSLLNQLAHENRSVVNDLAGTT 494 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RD V + DTAG+++ + + ++ ++ E +VL DA+ P Sbjct: 495 RDPVDEVITIGDEKWLFIDTAGIKRRLHKQSGADYYSSLRTQAAIERSELALVLFDASQP 554 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVS--DKLNLLQDLRTKAIKNLPQIGDIYINTI 356 QDL+I+ S G A+VL NKWD + D+L L + T+ ++ + Sbjct: 555 ISDQDLKIMSSAVEAGRAIVLVFNKWDALDEFDRLRLERLWETE----FNRVAWAQRVNL 610 Query: 357 SGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQI 416 S +TG + L+ ++ W RI T LNS+L + Q +P P + R+ + TQ Sbjct: 611 SAKTGWHTNRLLGAMHIALDSWDKRIPTGKLNSFLGQLQAAHPHPLRGGKQPRILFATQA 670 Query: 417 QSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 + PP F+IF T + Y+RY+ +R F G PI++ Sbjct: 671 ATKPPRFVIFAT--GFLEHGYRRYIERSMRERFGFEGSPIQISVH 713 Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 68/237 (28%), Positives = 110/237 (46%), Gaps = 18/237 (7%) Query: 167 YPNHPLEMIENNKRNEESPKENITSEGKSSVKNIS--KPLRIAVVGRPNVGKSTLINRLL 224 Y N+ L +E +EE SEG + + K IAV+GRPNVGKSTL+NR+L Sbjct: 247 YDNY-LSQLEGYDLDEEDRALLAESEGPVGGQEATDEKVGVIAVIGRPNVGKSTLVNRVL 305 Query: 225 GYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVR 284 G+ + G+TRD VS W H ++ DT G E ++ ++ ++ Sbjct: 306 GHRAAIVEDTPGVTRDRVSYEAEWAGHDFKLVDTGGWEAD---VEGIDSAIADQASIAMN 362 Query: 285 TCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKN 344 + I ++D T+ + D RI + ++G V +A+NK D + + + + + Sbjct: 363 MADAIIFVVDGTVGLTQTDDRIASLLRSSGKPVTVAVNKADSQAAEYAAAEFWKLGLGEP 422 Query: 345 LPQIGDIYINTISGR-TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPP 400 LP I+ + GR G+ LD + S+ + KL T S S L++ L P Sbjct: 423 LP------ISALHGRGVGDLLDAAVNSLSTVEKL-----TGSLAASDLRRVALIGRP 468 >gi|47097577|ref|ZP_00235108.1| GTPase family protein [Listeria monocytogenes str. 1/2a F6854] gi|47014052|gb|EAL05054.1| GTPase family protein [Listeria monocytogenes str. 1/2a F6854] Length = 400 Score = 216 bits (551), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 126/430 (29%), Positives = 225/430 (52%), Gaps = 31/430 (7%) Query: 36 ITRDRLYGQAIINGVIFNIVDTAGIADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAG 95 +TRDR+Y A G FNI+DT GI D + +Q+ Q E+AI+EA +I+F+ + + G Sbjct: 1 MTRDRIYNSAEWLGKEFNIIDTGGI-DLSDEPFLEQIRAQAEIAIDEADVIIFITNGREG 59 Query: 96 ITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 +T D + L + N PI++ NK+D + Y+ YSL F E IS H LG ++ Sbjct: 60 VTDADEQVAKILYRSNKPIVLAINKVDNPEMRDQIYDFYSLGFGEPYPISGSHGLGLGDM 119 Query: 156 HSVIFKIFKQKYPNHPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVG 215 + + +P + EE P + + + +++GRPNVG Sbjct: 120 LDAV----RAHFPK---------EEEEEYPDDTV---------------KFSLIGRPNVG 151 Query: 216 KSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKT 275 KS+++N LLG +R++ +G TRD++ ++ + + DTAGMRK ++ ES E+ + Sbjct: 152 KSSILNALLGEDRVIVSDIAGTTRDAIDTTYTFDGQDYVMIDTAGMRKRGKVYESTEKYS 211 Query: 276 VKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQ 335 V ++M+++ + +V+++A +QD RI + G A+++ +NKWD ++ + Sbjct: 212 VLRAMRAIERSDVVLVVINAEEGIREQDKRIAGYAHDAGRAIIIVVNKWDAINKDEKTI- 270 Query: 336 DLRTKAIKNLPQ-IGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKT 394 ++ T+ I+ Q + I +S +T + L++L + +++ R+ +S LN + Sbjct: 271 NVWTEDIREQFQFLSYAPIVFVSAKTKQRLNNLFPLINQVSDNHSLRVQSSMLNDVISDA 330 Query: 395 QLQNPPPTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGI 454 NP P + ++ Y TQ+ PP+F++F P + SY+R+L NR+R F G Sbjct: 331 VAMNPSPMDKGKRLKIFYTTQVAVKPPTFVVFVNDPELMHFSYERFLENRIREAFPFEGT 390 Query: 455 PIRMCFQSSK 464 PIR+ + K Sbjct: 391 PIRVIARKRK 400 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/186 (25%), Positives = 85/186 (45%), Gaps = 25/186 (13%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI---- 60 +++G PNVGKS++ N L+ + +V + G TRD + +G + ++DTAG+ Sbjct: 142 FSLIGRPNVGKSSILNALLGEDRVIVSDIAGTTRDAIDTTYTFDGQDYVMIDTAGMRKRG 201 Query: 61 ---ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIV 117 + S+ + M AI + ++L +I+++ GI D I + IIIV Sbjct: 202 KVYESTEKYSVLRAMR-----AIERSDVVLVVINAEEGIREQDKRIAGYAHDAGRAIIIV 256 Query: 118 SNKMDTRIAQRNFYEIYSLDFKE---------IVEISAEHDLGTSELHSVIFKIFKQKYP 168 NK D +++ D +E IV +SA+ T + + +F + Q Sbjct: 257 VNKWDAINKDEKTINVWTEDIREQFQFLSYAPIVFVSAK----TKQRLNNLFPLINQVSD 312 Query: 169 NHPLEM 174 NH L + Sbjct: 313 NHSLRV 318 >gi|240173132|ref|ZP_04751790.1| GTP-binding protein EngA [Mycobacterium kansasii ATCC 12478] Length = 466 Score = 216 bits (551), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 143/456 (31%), Positives = 227/456 (49%), Gaps = 36/456 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA-DG 63 +AIVG PNVGKSTL NR++ ++ AVV + PG+TRDR+ A+ +G F + DT G D Sbjct: 32 VAIVGRPNVGKSTLVNRILGRREAVVQDVPGVTRDRVSYDALWSGRRFVVQDTGGWEPDA 91 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 K + + + +Q +A+ A ++ ++D+ G T D A L + P+ + +NK+D Sbjct: 92 KG--LQQLVAEQASVAMRTADAVILVVDAGVGATTADEAAARILLRSGKPVFLAANKVDN 149 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + ++SL E +SA H G ++L + + Sbjct: 150 EKGEADAAALWSLGLGEPHAVSAMHGRGVADLLDQVLAALPEV----------------- 192 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 E+ ++ G P R+A+VG+PNVGKS+L+N+L G R + +G T D V Sbjct: 193 --GESASAGGG--------PRRVALVGKPNVGKSSLLNKLAGDQRSVVHEVAGTTVDPVD 242 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 DTAG+R+ E ++ ++ + E IVL+DA+ P +QD Sbjct: 243 SLIEMGGKVWRFVDTAGLRRKVGQASGHEFYASVRTHAAIDSAEVAIVLVDASQPLTEQD 302 Query: 304 LRIVDSVFNTGHAVVLALNKWDMV-SDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 R++ V G A+VLA NKWD+V D+ LL+ + + L Q+ IS +TG Sbjct: 303 QRVLSMVIEAGRALVLAFNKWDLVDEDRRELLE---REIDRELVQVRWAQRVNISAKTGR 359 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 + L+ ++ W TRI T LN+WL++ PPP R R+ + TQ + PP+ Sbjct: 360 AVQKLVPALESALASWDTRIATGPLNAWLKEVVAATPPPVRGGRQPRILFATQATARPPT 419 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 F++F T + Y+R+L RLR F G PIR+ Sbjct: 420 FVLFTT--GFLEAGYRRFLERRLRETFGFEGSPIRI 453 >gi|13508214|ref|NP_110163.1| GTP-binding protein EngA [Mycoplasma pneumoniae M129] gi|8247924|sp|P75309|DER_MYCPN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|11379528|gb|AAG34744.1|AE000034_1 GTPase [Mycoplasma pneumoniae M129] gi|301633464|gb|ADK87018.1| ribosome-associated GTPase EngA [Mycoplasma pneumoniae FH] Length = 449 Score = 216 bits (551), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 141/474 (29%), Positives = 238/474 (50%), Gaps = 36/474 (7%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYG--QAIINGVIFNIVDTAG 59 ++T+AI+G PNVGKS+LFNRL++K A++ + P TRDR+YG + + + F +DT G Sbjct: 1 MFTVAIIGRPNVGKSSLFNRLIQKPYAIISDTPNTTRDRIYGVGEWLTRQIAF--IDTGG 58 Query: 60 IADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRK-KNIPIIIVS 118 + K + +Q+ Q A+++A+ I+FL+ + I+ D + L+K K+ PI++V Sbjct: 59 LISQK-TPLQQQIEVQVRAALSQANAIIFLVSYQEQISSDDFYVAKVLKKIKDKPILLVV 117 Query: 119 NK---MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 NK + + N + YS F + V +SA H +G L + K Sbjct: 118 NKSENLKPDAYEPNLQQFYSFGFGQPVCVSASHGIGIGNLMDRLVK-------------- 163 Query: 176 ENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQS 235 + + P + +SE V R V+G+PNVGKS+LIN+L+ NR+L +S Sbjct: 164 -----DNQLPPYHGSSETNPEV-------RFCVIGKPNVGKSSLINQLVQQNRVLVSDES 211 Query: 236 GITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDA 295 G TRD++ I + DTAG+R+ +I +E + K+ ++ ++++D Sbjct: 212 GTTRDAIDIPLRVNGQNYLLIDTAGIRRKGKIAPGIEAASYGKTQLAIARSNIILLMVDG 271 Query: 296 TIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINT 355 + P +QD I V++ +NKWD+V N + + + + I Sbjct: 272 SKPLSEQDEIIGGLAQAALIPVIILVNKWDLVQKDSNTMAKFKKQLQSQFQHLSFAPIVF 331 Query: 356 ISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQ 415 IS + + L + + I + +I+TS LN +Q+ QL N P ++ Y Q Sbjct: 332 ISVKNNKRLHTIFEQLQIIQEQLTKKISTSLLNDVIQQAQLFNQAPLFKGGRLQVTYAVQ 391 Query: 416 IQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIK 469 S P F++FC P + SY R+L N++R +F S +PI + F+ SKN I+ Sbjct: 392 THSQTPHFVLFCNDPKFVHFSYARFLENKIRESFGFSAVPITLYFK-SKNARIR 444 >gi|242055911|ref|XP_002457101.1| hypothetical protein SORBIDRAFT_03g001220 [Sorghum bicolor] gi|241929076|gb|EES02221.1| hypothetical protein SORBIDRAFT_03g001220 [Sorghum bicolor] Length = 604 Score = 216 bits (551), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 146/489 (29%), Positives = 253/489 (51%), Gaps = 42/489 (8%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPG--ITRDRLYGQAIINGVIFNIVDTA 58 ++ T+ +VG PNVGKS LFNR ++++ A+V N PG +TRD G A + + F ++D+A Sbjct: 96 LLPTVILVGRPNVGKSALFNRFIRRREALVYNTPGDHVTRDIREGVAKLGDLRFRVLDSA 155 Query: 59 GIADGKNC-SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRK--KNIPII 115 G+ SI + D T + + +FLID + G+ P D + +LRK I + Sbjct: 156 GLETAATSGSILARTADMTGNVLARSQFAIFLIDVRDGLQPLDLEVGQWLRKHASGIHTL 215 Query: 116 IVSNKMDT----RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHP 171 + NK ++ + E + L F + V ISAE LG +EL+ ++ +F++ P Sbjct: 216 VAMNKSESLDEHGLLTAAAGEAHKLGFGDPVAISAETGLGMAELYEILRPLFEEYMFQLP 275 Query: 172 LEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLT 231 NN N++ P + +E ++ PL++A+VGRPNVGKSTL+N LL R+L Sbjct: 276 -----NNDLNQDDPISEVETEAHEGDES-KLPLQLAIVGRPNVGKSTLLNTLLQEQRVLV 329 Query: 232 GSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIV 291 G ++G+TRDS+ + + N + + DTAG + S + +V +S +++ + Sbjct: 330 GPEAGLTRDSIRAQFQFDNRTVYLVDTAGWMERSGKEKGPASLSVVQSRKNLMRAHIVAL 389 Query: 292 LLDAT-IPFEKQDLR-----IVDSVFNTGHAVVLALNKWDMVSDK---LNLLQDLRTKAI 342 +LDA I K + I G +V+ +NK D++ N + D I Sbjct: 390 VLDAEKIAKSKSSMNHPEVVIARQAIEEGRGLVVIVNKMDLLRGNQTLFNKVMDAVPSEI 449 Query: 343 KN-LPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPP 401 + +PQ+ I + +S G G +M V++ + W R++TS LN WL+K Sbjct: 450 QTVIPQVTGIPVVFVSALEGRGRVAVMRQVIDTYEKWCLRLSTSRLNRWLRK-------- 501 Query: 402 TIFNRYN--------RLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSG 453 + +R++ ++KY TQ+++ PP+F+ F + ++ ++ R+L L+ +F + G Sbjct: 502 -VMSRHSWKDSATQPKVKYFTQVKARPPTFVAFMSGKTQLSDTDIRFLTKSLKEDFDIGG 560 Query: 454 IPIRMCFQS 462 IPIR+ +S Sbjct: 561 IPIRIVQRS 569 >gi|62185493|ref|YP_220278.1| GTP-binding protein EngA [Chlamydophila abortus S26/3] gi|81312359|sp|Q5L4W4|DER_CHLAB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|62148560|emb|CAH64331.1| putative GTP-binding protein [Chlamydophila abortus S26/3] Length = 474 Score = 216 bits (550), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 145/476 (30%), Positives = 242/476 (50%), Gaps = 31/476 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAI+G PNVGKS+LFNR+ K+ +A+V + G TRDRLYG+ G+ ++DT G+ Sbjct: 4 IAILGRPNVGKSSLFNRMCKRSLAIVNSQEGTTRDRLYGEIRGWGIPVQVIDTGGVDKDS 63 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 K + Q NEA ++L +ID + GIT D I L P+I+V+NK DT Sbjct: 64 EDHFQKHIYKQALAGANEADILLLVIDIRCGITELDAEIAKQLLYLKKPLILVANKADTL 123 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKI-----------------FKQKY 167 + +E+Y + EIV +SA HD + +I KI +++ Sbjct: 124 KDEYRVHELYKIGISEIVTVSASHD---KHIDKLIHKIKTLANVPEVVEEPREEMHEEEV 180 Query: 168 PNHPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYN 227 P +E E + + E+ T+ +SSV + KPL+IA++GRPNVGKS++IN LL Sbjct: 181 PG--MEFPETKEFLSDDEDED-TAFSQSSVAD--KPLKIALIGRPNVGKSSIINALLNEE 235 Query: 228 RLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCE 287 R + + G TRD++ I ++ + DTAG+RK + S+E + ++ +++ + Sbjct: 236 RCIIDNVPGTTRDNIDILYSHNDRSYLFIDTAGLRKMKSVKNSIEWISSSRTEKAIARAD 295 Query: 288 TTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSD--KLNLLQDLRTKAIKNL 345 ++++DAT D RI+ + ++ +NKWD++ + ++DLR + Sbjct: 296 ICLLVIDATHHLSSYDKRILSLISKQKKPHIILVNKWDLIEGVRMEHYIRDLRATDM--- 352 Query: 346 PQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFN 405 IG I IS T L + S+ E++ +++ T +N L ++ P I Sbjct: 353 -YIGQSKILCISAATKRNLRQIFSSIDELHTTVSSKVPTPVVNKTLALALQKHHPQVING 411 Query: 406 RYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 R R+ Y ++P FL+F + + + Y+ YL N L+ F+L G+P + F+ Sbjct: 412 RRLRVYYAIHKTATPFQFLLFINAKSLLTKHYECYLKNTLKSAFNLYGVPFDLEFK 467 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 78/165 (47%), Gaps = 11/165 (6%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 LRIA++GRPNVGKS+L NR+ + + SQ G TRD + P+++ DT G+ K Sbjct: 2 LRIAILGRPNVGKSSLFNRMCKRSLAIVNSQEGTTRDRLYGEIRGWGIPVQVIDTGGVDK 61 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 S + ++ K+++ + ++++D + D I + ++L NK Sbjct: 62 DSE--DHFQKHIYKQALAGANEADILLLVIDIRCGITELDAEIAKQLLYLKKPLILVANK 119 Query: 324 WDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLM 368 D + D+ + L +IG I T+S + +D L+ Sbjct: 120 ADTLKDEYR---------VHELYKIGISEIVTVSASHDKHIDKLI 155 >gi|289677942|ref|ZP_06498832.1| GTP-binding protein EngA [Pseudomonas syringae pv. syringae FF5] Length = 391 Score = 216 bits (550), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 135/401 (33%), Positives = 217/401 (54%), Gaps = 10/401 (2%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ IA+VG PNVGKST+FNRL + + A+VG+ G+TRDR YG+A G + ++DT GI Sbjct: 1 MVPVIALVGRPNVGKSTMFNRLTRTRDAIVGDLSGLTRDRQYGEAKWQGRSYILIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + G + ++M +Q+ LAI EA ++LFL+D++AG T D I LRK+N +V+NK Sbjct: 61 S-GDEHGMDEKMAEQSLLAIEEADVVLFLVDARAGYTAADQMIGEHLRKRNKRSYVVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D E + + + ++ H G S++ +I +++P E+ E + Sbjct: 120 IDNIDENLARAEFSPMGLGDAIPVAGAHGRGISQM----LEIALREFPRDEDELEEGAEV 175 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 E + + S K+ ++IA++GRPNVGKSTL+NR+LG +R++ + G TRD Sbjct: 176 EEVAEGQEAKRIPGPSEKD---GIKIAIIGRPNVGKSTLVNRMLGEDRVIVYDEPGTTRD 232 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ I + + DTAG+RK +I E +E+ +V K++Q+++ I ++DA Sbjct: 233 SIYIPFERNEEKYTLIDTAGVRKRGKIHEEVEKFSVVKTLQAIKDANVVIFVMDAREGVV 292 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 DL ++ G A+V+ALNKWD ++ + + DI+ IS Sbjct: 293 DHDLNLLGFALEAGRALVIALNKWDGMTPGERDFVKIELERRLFFVDFADIHF--ISALH 350 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPP 401 G G+ +L SV K TR TS L L+ ++ PP Sbjct: 351 GTGVGNLYQSVQNSFKSAVTRWPTSRLTQILEDAVSEHAPP 391 >gi|194246522|ref|YP_002004161.1| GTP-binding protein EngA [Candidatus Phytoplasma mali] gi|193806879|emb|CAP18308.1| conserved hypothetical protein [Candidatus Phytoplasma mali] Length = 441 Score = 216 bits (550), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 145/465 (31%), Positives = 242/465 (52%), Gaps = 35/465 (7%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M + +AIVG PNVGKS++FNR++KK++++V + PGITRDR+Y QA F+I+DT GI Sbjct: 1 MNFKVAIVGRPNVGKSSIFNRILKKRLSIVHDKPGITRDRIYAQADWLTKSFDIIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + KN KQ+ Q +LAI+EA+LILF++D + D I+ L K P+I+V NK Sbjct: 61 -EIKNTPFLKQIKYQVQLAIDEANLILFVVDGRIFGNQGDIYISKILLKTKKPVILVINK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL-HSVIFKIFKQKYPNHPLEMIENNK 179 +D + N Y+ YSL FK I +SA H +G +L +IF K++Y + Sbjct: 120 IDNKDLLSNTYDFYSLGFKNIQIVSANHGIGIGDLLDKIIFFHHKKEYFS---------- 169 Query: 180 RNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITR 239 K SV ++ ++GRPNVGKSTL N +L R++ +G T Sbjct: 170 --------------KDSV------IKFCLLGRPNVGKSTLTNMILSQERMVVSDIAGTTT 209 Query: 240 DSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPF 299 D+V + ++ DTAG++K +I E ++ +V +++ ++ + ++LDA Sbjct: 210 DAVDTFFQKGEKIYQVIDTAGIKKRGKIYEKEDKYSVLRALSALGRSDIACLVLDADRGI 269 Query: 300 EKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGD---IYINTI 356 +QD I + A ++ +NKWD++ + I+N Q + I + Sbjct: 270 SEQDKNIAGLILEYNKACIIIVNKWDLIKTEDYDQTKYFINKIRNEFQFLNYVPIVFLSA 329 Query: 357 SGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQI 416 + L+ + +I + + + LN+ LQ++ L + + + YITQ Sbjct: 330 KNENKNKKEKLLNLLNQIFLNYTQKFSNYILNNILQESVLIHSISSFNKGKAKFNYITQT 389 Query: 417 QSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 ++ P F+ F P I SY+R+L N+ R N +L G+P+++ F+ Sbjct: 390 KNKFPEFVCFVNNPKFIHFSYERFLKNQFRKNLNLEGVPLKIIFK 434 >gi|29840678|ref|NP_829784.1| GTP-binding protein EngA [Chlamydophila caviae GPIC] gi|33301057|sp|Q821L7|DER_CHLCV RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|29835028|gb|AAP05662.1| GTP-binding protein [Chlamydophila caviae GPIC] Length = 474 Score = 216 bits (550), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 144/476 (30%), Positives = 237/476 (49%), Gaps = 31/476 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAI+G PNVGKS+LFNR+ K+ +A+V + G TRDRLYG+ V ++DT G+ Sbjct: 4 IAILGRPNVGKSSLFNRMCKRSLAIVNSQEGTTRDRLYGEIRGWSVPVQVIDTGGVDKDS 63 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 K + Q NEA ++L ++D + GIT D + L N P+I+V+NK DT Sbjct: 64 EDHFQKHIYKQALAGANEADILLLVVDIRCGITEQDAELAKMLLPLNKPLILVANKADTF 123 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHD------------LGTSELHSVIFKIFKQKYPNHP- 171 + +E+Y L EI+ +SA HD LG F + + P Sbjct: 124 KDEHRIHELYKLGISEILAVSASHDKHIDKLLQRIKTLGNVPEVVEEFSEEEVEEEAVPS 183 Query: 172 LEMIE----NNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYN 227 +E++ ++ EE P S+ KPL+IA++GRPNVGKS++IN LL Sbjct: 184 MELLSKEPLSDYEEEEIP--------FSTTSAPDKPLKIALIGRPNVGKSSIINGLLNEE 235 Query: 228 RLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCE 287 R + + G TRD+V I ++ + DTAG+RK + S+E + ++ +++ + Sbjct: 236 RCIIDNVPGTTRDNVDILYSHNDRSYLFIDTAGLRKMKSVKNSIEWISSSRTEKAIARAD 295 Query: 288 TTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSD--KLNLLQDLRTKAIKNL 345 ++++DA D RI+ + ++ +NKWD++ + ++DLR + Sbjct: 296 VCLLVIDAQHHLSSYDKRILSLISKHKKPHIILVNKWDLIEGVRMEHYIRDLRATDV--- 352 Query: 346 PQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFN 405 IG I IS T L + S+ E+ + +++ T +N L T ++ P I Sbjct: 353 -YIGQSRILCISAATKRNLRHIFSSIDELYETVSSKVPTPVVNKTLASTLQKHHPQVING 411 Query: 406 RYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 R R+ Y ++P FL+F + + + Y+ YL N L+ +F+L GIP + F+ Sbjct: 412 RRLRIYYAIHKTATPFQFLLFINAKSLLTKHYECYLRNTLKSSFNLYGIPFDLEFK 467 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 43/165 (26%), Positives = 78/165 (47%), Gaps = 11/165 (6%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 LRIA++GRPNVGKS+L NR+ + + SQ G TRD + + P+++ DT G+ K Sbjct: 2 LRIAILGRPNVGKSSLFNRMCKRSLAIVNSQEGTTRDRLYGEIRGWSVPVQVIDTGGVDK 61 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 S + ++ K+++ + ++++D +QD + + ++L NK Sbjct: 62 DSE--DHFQKHIYKQALAGANEADILLLVVDIRCGITEQDAELAKMLLPLNKPLILVANK 119 Query: 324 WDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLM 368 D D+ I L ++G I +S + +D L+ Sbjct: 120 ADTFKDE---------HRIHELYKLGISEILAVSASHDKHIDKLL 155 >gi|329943260|ref|ZP_08292034.1| small GTP-binding domain protein [Chlamydophila psittaci Cal10] gi|332287839|ref|YP_004422740.1| ribosome-associated GTPase [Chlamydophila psittaci 6BC] gi|313848411|emb|CBY17415.1| putative GTP-binding protein [Chlamydophila psittaci RD1] gi|325506575|gb|ADZ18213.1| ribosome-associated GTPase [Chlamydophila psittaci 6BC] gi|328814807|gb|EGF84797.1| small GTP-binding domain protein [Chlamydophila psittaci Cal10] gi|328915100|gb|AEB55933.1| GTP-binding protein engA [Chlamydophila psittaci 6BC] Length = 474 Score = 216 bits (549), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 140/471 (29%), Positives = 236/471 (50%), Gaps = 21/471 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAI+G PNVGKS+LFNR+ K+ +A+V + G TRDRLYG+ G+ ++DT G+ Sbjct: 4 IAILGRPNVGKSSLFNRMCKRSLAIVNSQEGTTRDRLYGEIRGWGIPVQVIDTGGVDKDS 63 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 K + Q NEA ++L +ID + GIT D I L P+I+V+NK DT Sbjct: 64 EDHFQKHIYKQALAGANEADILLLVIDIRCGITELDAEIAKQLLCLKKPLILVANKADTL 123 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHD------------LGTSELHSVIFKIFKQKYPNHPL 172 + +E+Y + +I+ +SA HD L + + Sbjct: 124 KDEYRIHELYKIGISDILAVSASHDKHIDNLIHRIKTLANVPEVVEEPVEEIHEEEVPVM 183 Query: 173 EMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTG 232 E +E + + E+ + SSV++ KPL+IA++GRPNVGKS++IN LL R + Sbjct: 184 ESLETEEFLADYENED-SDFSVSSVED--KPLKIALIGRPNVGKSSIINALLNEERCIID 240 Query: 233 SQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVL 292 + G TRD++ I +++ + DTAG+RK + S+E + ++ +++ + +++ Sbjct: 241 NIPGTTRDNIDILYSYNDRSYLFIDTAGLRKMKSVKNSIEWISSSRTEKAIARADICLLV 300 Query: 293 LDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSD--KLNLLQDLRTKAIKNLPQIGD 350 +DAT D RI+ + ++ +NKWD++ + ++DLR + IG Sbjct: 301 IDATHHLSSYDKRILSLISKQKKPHIILVNKWDLIQGVRMEHYIRDLRATDV----YIGQ 356 Query: 351 IYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRL 410 I IS T L + S+ E++K ++ T +N L ++ P I R R+ Sbjct: 357 SKILCISAATKRNLRQIFSSIDELHKTISNKVPTPVVNKTLALALQKHHPQVINGRRLRV 416 Query: 411 KYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 Y ++P FL+F + + + Y+ YL N L+ F+L G+P + F+ Sbjct: 417 YYAIHKTATPFQFLLFINAKSLLTKHYECYLKNTLKSAFNLYGVPFDLEFK 467 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 78/165 (47%), Gaps = 11/165 (6%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 LRIA++GRPNVGKS+L NR+ + + SQ G TRD + P+++ DT G+ K Sbjct: 2 LRIAILGRPNVGKSSLFNRMCKRSLAIVNSQEGTTRDRLYGEIRGWGIPVQVIDTGGVDK 61 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 S + ++ K+++ + ++++D + D I + ++L NK Sbjct: 62 DSE--DHFQKHIYKQALAGANEADILLLVIDIRCGITELDAEIAKQLLCLKKPLILVANK 119 Query: 324 WDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLM 368 D + D+ I L +IG I +S + +D+L+ Sbjct: 120 ADTLKDEYR---------IHELYKIGISDILAVSASHDKHIDNLI 155 >gi|167957385|ref|ZP_02544459.1| small GTP-binding protein [candidate division TM7 single-cell isolate TM7c] gi|169835713|ref|ZP_02868901.1| small GTP-binding protein [candidate division TM7 single-cell isolate TM7a] Length = 473 Score = 216 bits (549), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 147/465 (31%), Positives = 236/465 (50%), Gaps = 38/465 (8%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+A++G NVGKS+LFNR+V+ + A+V G TRD + G+ F +VDTAG+ D Sbjct: 7 TVALIGQANVGKSSLFNRMVRAQQAIVAREAGTTRDSVIGKVEYKKHQFWLVDTAGLKD- 65 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 N + DQ A A +IL ++DS + D + K P+I+V NK D Sbjct: 66 PNDDFEATIQDQITEASESADVILVVVDSIMYPSDQDKIVAKKALKSKKPVILVLNKTDL 125 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + E L K +++ SAEH+ G + L I +K P +E +N+ Sbjct: 126 K-GSLPVDEFKRLGIKTVIQTSAEHNRGIANL----LDIVTEKMPAK-IERQQND----- 174 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 LR+A++GRPNVGKSTL N L G + L + +G TRD Sbjct: 175 -------------------ILRVALIGRPNVGKSTLFNALAGKQQALVANIAGTTRDINR 215 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + + + IE+ DTAG+R+ + +E+ +V +++Q++ + ++LLD D Sbjct: 216 VQVRYNQNTIELLDTAGIRRQGKQETGIEKFSVLRTLQAIEESDICLLLLDVNELNVALD 275 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAI----KNLPQIGDIYINTISGR 359 R+ + +TG +++ ++KWD V K +D I K +P I+ ++I+G+ Sbjct: 276 QRLAGIINDTGKGLIVVVSKWDSVEGKDAFTRDALAPKISYHLKFVPWAPLIFTSSITGQ 335 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 L DL VL+INK T LN LQK ++PP + N + +L+YI Q ++ Sbjct: 336 NITKLFDL---VLDINKRRNQETKTRTLNDLLQKAVQKHPPAGLKNTHPKLRYIVQTDTT 392 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 PP F+I+ + I SYKRYL + +R ++ +GIPI++ F+ K Sbjct: 393 PPWFVIYGSNLKFIHWSYKRYLESLIRDTYNYNGIPIKLSFRDEK 437 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 38/126 (30%), Positives = 69/126 (54%), Gaps = 3/126 (2%) Query: 201 SKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAG 260 SK +A++G+ NVGKS+L NR++ + + ++G TRDSV +K H + DTAG Sbjct: 3 SKLPTVALIGQANVGKSSLFNRMVRAQQAIVAREAGTTRDSVIGKVEYKKHQFWLVDTAG 62 Query: 261 MRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLA 320 ++ P+ E+ Q + ++ +S + +V++D+ + QD + + V+L Sbjct: 63 LKDPNDDFEATIQDQITEASES---ADVILVVVDSIMYPSDQDKIVAKKALKSKKPVILV 119 Query: 321 LNKWDM 326 LNK D+ Sbjct: 120 LNKTDL 125 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 45/124 (36%), Positives = 62/124 (50%), Gaps = 2/124 (1%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI- 60 I +A++G PNVGKSTLFN L K+ A+V N G TRD Q N ++DTAGI Sbjct: 175 ILRVALIGRPNVGKSTLFNALAGKQQALVANIAGTTRDINRVQVRYNQNTIELLDTAGIR 234 Query: 61 ADGKN-CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 GK I K +T AI E+ + L L+D D + + +I+V + Sbjct: 235 RQGKQETGIEKFSVLRTLQAIEESDICLLLLDVNELNVALDQRLAGIINDTGKGLIVVVS 294 Query: 120 KMDT 123 K D+ Sbjct: 295 KWDS 298 >gi|78189608|ref|YP_379946.1| GTP-binding protein EngA [Chlorobium chlorochromatii CaD3] gi|123743429|sp|Q3AQ22|DER_CHLCH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|78171807|gb|ABB28903.1| Small GTP-binding protein domain [Chlorobium chlorochromatii CaD3] Length = 443 Score = 216 bits (549), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 141/463 (30%), Positives = 245/463 (52%), Gaps = 40/463 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI-ADG 63 +A+VG PNVGKSTLFNR+++++ A+V PG+TRDR + G F ++DT G DG Sbjct: 5 LALVGRPNVGKSTLFNRILRQRSAIVDPTPGVTRDRHIAEGEWQGKQFKLMDTGGYNTDG 64 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRK--KNIPIIIVSNKM 121 ++K M +QT A+ +A ILF+ D++AG++ D + L++ ++ + V NK+ Sbjct: 65 D--VLSKAMLEQTLHALADADSILFITDARAGLSYEDLELARILQRSFQHKQLFFVVNKV 122 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 ++ F +SA+ G ++L + + Sbjct: 123 ESPQLVIEAESFIKTGFTTPYFVSAKDGSGVADLLDDVLEALP----------------- 165 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 E+P+ + +G ++V +A+VGRPNVGKS+ +N LLG NR + + G TRD+ Sbjct: 166 -EAPEGEV--KGDTAV-------HLAIVGRPNVGKSSFVNALLGTNRHIVSNIPGTTRDA 215 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 + + DTAG+RK ++I +E + +S +++ CE IV+LDA EK Sbjct: 216 IDSRLMRNQQEYLLIDTAGLRKRTKIDAGIEYYSSLRSERAIERCEVAIVMLDAEQGIEK 275 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVSD----KLNLLQDLRTKAIKNLPQIGDIYINTIS 357 QDL+I++ V+L +NKWD++ + + LR A+ NL + ++ +S Sbjct: 276 QDLKIINMAIERKKGVLLLVNKWDLIEKDSKTSIRYEEQLRM-AMGNLSYVPVLF---VS 331 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 T + L + + L+I++ ++TS LN +L++T Q P T R ++KY+TQ++ Sbjct: 332 AMTKKNLYRALDTALQISRNRSQNVSTSQLNKFLEQTLAQVHPATKSGRELKIKYMTQLK 391 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCF 460 S+ P F FC P + +++++L N+LR ++ G+PI + F Sbjct: 392 SAWPVFGFFCNDPLLVQSNFRKFLENKLREAYNFEGVPISLRF 434 >gi|91069816|gb|ABE10748.1| GTP-binding protein [uncultured Prochlorococcus marinus clone ASNC1092] Length = 457 Score = 216 bits (549), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 136/469 (28%), Positives = 232/469 (49%), Gaps = 31/469 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAI+G PNVGKSTL NRL + A+V + PG+TRDR Y A G F IVDT G+ Sbjct: 5 TIAIIGRPNVGKSTLVNRLCQSNDAIVFDKPGVTRDRTYQNASWGGKEFQIVDTGGLVFD 64 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD- 122 + Q+ Q LA+ EA L L ++D G+T D +I +LR + I+ NK + Sbjct: 65 DDSEFLPQIRTQVFLALEEASLALLVVDGNQGVTDGDLSIAKWLRNSSCKTIVAVNKCES 124 Query: 123 TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 T + E + L E +SA H GT +L ++ E+ ENN +++ Sbjct: 125 TTLGISLASEFWKLGLGEPNPVSAIHGSGTGDLLDLVIG-----------ELPENNIQDD 173 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 E + + ++++GRPNVGKS+L+N + G R + SG T DS+ Sbjct: 174 E------------------EKIMMSIIGRPNVGKSSLLNSICGEKRAIVSDISGTTTDSI 215 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 ++ +I DTAG+R+ + E + ++ +S+ + ++++DA Q Sbjct: 216 DTLIKKGDNHWKIIDTAGIRRKKNVKYGTEFFGINRAFKSIDRSDVCVLVIDAIDGVTDQ 275 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D ++ + G A ++ +NKWD+V + + + + L + + IS TG+ Sbjct: 276 DQKLAGRIEEQGRACIIVVNKWDLVEKNSSTIYQVEKELRSKLYFLHWSKMIFISALTGQ 335 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKT-QLQNPPPTIFNRYNRLKYITQIQSSPP 421 +D++ L + R+TTS +N L+++ ++PP + RL Y TQ+++ PP Sbjct: 336 RVDNIFEHALNAVNQHRRRVTTSVVNEVLKESISWKSPPTKRSGKQGRLYYGTQVKNKPP 395 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +F +F P +Y+RY+ ++R+N G PI + ++ + + K Sbjct: 396 TFTLFVNDPKLFGITYRRYIEKQIRVNLGFEGTPIILLWRGKQQRALNK 444 >gi|193216656|ref|YP_001999898.1| GTP-binding protein EngA [Mycoplasma arthritidis 158L3-1] gi|193001979|gb|ACF07194.1| GTPase protein EngA [Mycoplasma arthritidis 158L3-1] Length = 434 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 136/465 (29%), Positives = 232/465 (49%), Gaps = 38/465 (8%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +AI+G PNVGKST FN+L+ K+ A+V + PG+TRDR+Y G F ++DT GI Sbjct: 1 MKNAVAIIGKPNVGKSTFFNKLINKRKAIVYDRPGVTRDRIYDVVSWAGSTFTLIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 +N +Q+ Q ++AI+EA +I+FLID + +T D + LRK +I+ NK Sbjct: 61 T-IENDDFKEQIKIQAQVAIDEASVIVFLIDGRNSLTSEDFFVAELLRKSAKKVILAINK 119 Query: 121 MDTRIAQRNF-YE--IYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 I NF ++ IYSL F +I +IS+ H G +L I F K Sbjct: 120 ----IENNNFDFDPLIYSLGFNKIFKISSIHGDGLGDLLDEIISSFDPKTAQE------- 168 Query: 178 NKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGI 237 S+ ++A++G+ NVGKSTL+N L R + +G Sbjct: 169 -----------------------SQVFKLALLGKTNVGKSTLLNTLSNEERSIVSDIAGT 205 Query: 238 TRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATI 297 TRD++S E+ DTAG+++ S++ +S+E ++ ++ ++ +++LDAT Sbjct: 206 TRDAISSFIKINGEEFEVVDTAGIKRKSKLIDSIEHYSLIRAHAAIEEANLCLLVLDATD 265 Query: 298 PFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTIS 357 I+ + +++ +NKWD + + + + K L + I IS Sbjct: 266 EVSHFHQNIIGIAYEQKKPMIVIVNKWDKIEKDTSTMDKFKKSLAKKLKFVDWAPIAFIS 325 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 + + ++ L +L++ K +ITT++LN + QL P +I + + + Q++ Sbjct: 326 AKNNQRINKLKDLILKVKDNIKRKITTNHLNELIMNVQLMRPASSINGKRLSITFAKQVE 385 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 S P+F++F SY RYL N++R+N+ SG PI + ++ Sbjct: 386 GSIPTFVLFVNDKKLAHFSYLRYLENQIRLNYDFSGTPIELILKN 430 >gi|87306807|ref|ZP_01088953.1| probable GTP-binding protein [Blastopirellula marina DSM 3645] gi|87290180|gb|EAQ82068.1| probable GTP-binding protein [Blastopirellula marina DSM 3645] Length = 473 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 139/472 (29%), Positives = 230/472 (48%), Gaps = 42/472 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 I IVG PNVGKS+LFN L +++A+V N G+TRDR+ F IVDT GI Sbjct: 6 IVIVGRPNVGKSSLFNWLAGRRLAIVDNVAGVTRDRMTYLMQWRERYFEIVDTGGIGVND 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + ++ Q +AI+ A LILF++D++ GI P D + LR N PI++V+NK D + Sbjct: 66 VDDLTDEIEQQIAIAIDSADLILFVVDTREGILPLDQEVARRLRHVNKPIVLVANKTDEQ 125 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + Y L ++V +S + +L +VI + P+ Sbjct: 126 HMDHDADQFYQLGRGKLVPVSTLQNRNKDDLLNVI----ADRLPD--------------- 166 Query: 185 PKENITSEGKSSVKNISKP-LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 EG+ + +P ++IAVVGR NVGKST +N L R++ +G TRDSV Sbjct: 167 -----AEEGEQT----GEPEMKIAVVGRRNVGKSTFVNTLARAERMIVSEVAGTTRDSVD 217 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 I + DT G+R+ + ++ + ++ +S+R + ++ DA+ K D Sbjct: 218 IRFELDGKSFTAIDTPGLRRRVSVKTDVDFYSTHRAERSIRRADVVLMFFDASQQISKVD 277 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKL------NLLQDLRTKAIKNLPQIGDIYINTIS 357 +++ + VV +NKWD+ DK+ L D +N+P + I+ Sbjct: 278 KQLIAYIAENYKPVVFVVNKWDLYHDKMPTDRWATYLHD----TFRNIPYAP---VAFIT 330 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 G+TG+ + L+ + K RITT LN ++ + PPP R ++ + TQI Sbjct: 331 GQTGKNVKALLNHAQMLFKQSLERITTGELNRIVRFAIEKTPPPLYKLRRPKIYFATQIG 390 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIK 469 + PP+ ++ C P + Y+RYL++ +R + S S +PI++ + K Sbjct: 391 AQPPTIVLKCNSPKAFSDGYRRYLLSMIRDHVSFSEVPIKLYLHRRQEADFK 442 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/123 (27%), Positives = 60/123 (48%), Gaps = 6/123 (4%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGM--R 262 +I +VGRPNVGKS+L N L G + + +G+TRD ++ W+ EI DT G+ Sbjct: 5 QIVIVGRPNVGKSSLFNWLAGRRLAIVDNVAGVTRDRMTYLMQWRERYFEIVDTGGIGVN 64 Query: 263 KPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALN 322 +T+ +EQ+ ++ + + + ++D D + + + +VL N Sbjct: 65 DVDDLTDEIEQQIAI----AIDSADLILFVVDTREGILPLDQEVARRLRHVNKPIVLVAN 120 Query: 323 KWD 325 K D Sbjct: 121 KTD 123 >gi|225435462|ref|XP_002282837.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 677 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 151/506 (29%), Positives = 253/506 (50%), Gaps = 71/506 (14%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 ++ + IVG PNVGKS LFNRLV A+V + PG+TRDRLYG+A F ++DT G+ Sbjct: 172 LLPRVTIVGRPNVGKSALFNRLVGGNKAIVVDEPGVTRDRLYGRAFWGDYEFMVIDTGGV 231 Query: 61 ---------------------ADG-----KNCSIAKQ---MNDQTELAINEAHLILFLID 91 DG + ++A+ + Q AI E+ +I+FL+D Sbjct: 232 LTISKSQDNVMEELAITKTIGMDGIPLASREAAVARMPTMIEKQATAAIEESSVIIFLVD 291 Query: 92 SKAGITPYDHAITSFLRK--KNIPIIIVSNKMDT-RIAQRNFYEIYSLDFKEIVEISAEH 148 +AG++ D I +LRK N I++ NK ++ + E +SL F + ISA Sbjct: 292 GQAGLSAADVEIADWLRKNYSNKCIVLAVNKCESPKKGIMQALEFWSLGFTPL-PISAVS 350 Query: 149 DLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAV 208 GT EL L+++ + + E P EN+ E +N IA+ Sbjct: 351 GTGTGEL----------------LDLVCSGLKKIEDP-ENLDGE-----ENYVPA--IAI 386 Query: 209 VGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKN-HPIEIFDTAGMRKPSRI 267 VGRPNVGKS+++N L+G +R + SG TRD++ + + + DTAG+R+ + + Sbjct: 387 VGRPNVGKSSILNALVGEDRTIVSPVSGTTRDAIDTEFTGPDGQKYRLIDTAGIRRRAAV 446 Query: 268 TES---LEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 S E +V ++ +++R + ++++A +QD RI + + G ++ +NKW Sbjct: 447 ASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDYRIAERIEREGKGCLIVVNKW 506 Query: 325 DMVSDK-----LNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWK 379 D + +K QD+R K ++ L +Y I+G + +D ++V+ + K Sbjct: 507 DTIPNKNQQTATYYEQDVREK-LRVLGWAPIVYSTAIAGHS---VDKIIVAASTVEKERS 562 Query: 380 TRITTSYLNSWLQKT-QLQNPPPTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYK 438 R++TS LN +Q+ ++PP + R+ Y TQ PP+F+ F PE+Y+ Sbjct: 563 RRLSTSILNQVVQEALAFKSPPRNRGGKRGRVYYCTQAAIRPPTFVFFVNDAKLFPETYR 622 Query: 439 RYLINRLRINFSLSGIPIRMCFQSSK 464 RY+ +LR + SG PIR+ ++S + Sbjct: 623 RYMEKQLRSDAGFSGTPIRLLWRSRR 648 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 62/232 (26%), Positives = 106/232 (45%), Gaps = 40/232 (17%) Query: 175 IENNKRNEESPKENITSEGKSSVKNISKPL---RIAVVGRPNVGKSTLINRLLGYNRLLT 231 IE + NE + + KS+ +N+ R+ +VGRPNVGKS L NRL+G N+ + Sbjct: 142 IEEDGANELKGRGGKQKKSKSTTRNVIPDHLLPRVTIVGRPNVGKSALFNRLVGGNKAIV 201 Query: 232 GSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQ-----KTV---------- 276 + G+TRD + W ++ + DT G+ S+ +++ + KT+ Sbjct: 202 VDEPGVTRDRLYGRAFWGDYEFMVIDTGGVLTISKSQDNVMEELAITKTIGMDGIPLASR 261 Query: 277 ------------KKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFN--TGHAVVLALN 322 K++ ++ I L+D D+ I D + + +VLA+N Sbjct: 262 EAAVARMPTMIEKQATAAIEESSVIIFLVDGQAGLSAADVEIADWLRKNYSNKCIVLAVN 321 Query: 323 KWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG-LDDLMVSVLE 373 K + S K ++Q L ++ P + I+ +SG TG G L DL+ S L+ Sbjct: 322 KCE--SPKKGIMQALEFWSLGFTP----LPISAVSG-TGTGELLDLVCSGLK 366 >gi|146182630|ref|XP_001471040.1| GTP-binding protein enga [Tetrahymena thermophila] gi|146143797|gb|EDK31367.1| GTP-binding protein enga [Tetrahymena thermophila SB210] Length = 670 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 155/571 (27%), Positives = 272/571 (47%), Gaps = 107/571 (18%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKM--AVVGNHPGITRDRLYGQAIINGVIFNIVDTAG 59 IYTI+ VG PNVGKS+LFN+L + M A+ PG+TRDR I G +VDTAG Sbjct: 61 IYTISFVGRPNVGKSSLFNKLSEDGMNKALTDRMPGLTRDRKEQITTILGYPLRLVDTAG 120 Query: 60 IAD-------GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNI 112 + K I ++M DQT A+ + L LF++D++ GIT D + +L+++ + Sbjct: 121 VEKLPKDPHRFKPTQIKQKMMDQTVQALIYSDLTLFVLDARQGITARDKELAKWLKRRLL 180 Query: 113 -------------------------PIIIVSNKMD--TRIAQRNFY-EIYSLDFKEIVEI 144 +I+++NK D T I N ++Y L + + + Sbjct: 181 QDKSEENVKKMNENATDLDKDIFIKKLILLANKADNETIIEDSNIMNDVYKLGLGDPLFV 240 Query: 145 SAEHDLGTSELHSVI-------FK---IFKQKYPNHPLEMIENNKRNE------------ 182 SA G +L +I FK + K++ + I +N+R E Sbjct: 241 SAHQGDGLIDLLRIIDDEVPQDFKDNFLLKKQRRLERFQKIRSNQREEILELMRKKELPD 300 Query: 183 ------------------------------------ESPKENITSEGK---SSVKNISKP 203 ++ K+++ E K S KP Sbjct: 301 DIDITAWEREFDKANPDPENNSDLDSDNEFDPVETLQNTKDDLLKEDKGVTSQNDKKKKP 360 Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 ++I+++GR N GKSTL+N LL R++ +G TRD++ + W ++ I++ DT+G+ K Sbjct: 361 IQISIIGRSNCGKSTLVNNLLQEERVIADDLAGTTRDAIKVQWAYRGRKIDLVDTSGIDK 420 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 +E+K ++++V+ + ++DA F+ QDL + V + G A++L +NK Sbjct: 421 KITKVSEVEKKIQNDTIRAVKQSHVVVCMIDALRAFQSQDLSLAQYVCDQGRALILVVNK 480 Query: 324 WDMVSD--KLNLLQDLRTKAIKNLPQIGDIYINTISGR-TGEGLDDLMVSVLEINKLWKT 380 WD+V + K L+ + + K+L Q+ +Y++ +S + G +++M VL+ + W Sbjct: 481 WDLVPEEYKKKALRYMNNQLEKHLAQVRGVYLHCMSAKNNGNDKEEMMNYVLKAYEKWNI 540 Query: 381 RITTSYLNSWLQK-TQLQNPPPTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKR 439 RI+T LN WL + ++QN P N+ ++++++Q++S PP+F++F +Y R Sbjct: 541 RISTGMLNDWLNRFKKVQNAPTEGGNKL-KIRFVSQVKSRPPTFVVFVNDKVLFKPNYMR 599 Query: 440 YLINRLRINFSLSGIPIRMCF----QSSKNP 466 ++ ++ F L G P+R Q KNP Sbjct: 600 FMRQKMAEEFGLQGTPLRFLVRETDQKVKNP 630 >gi|302533632|ref|ZP_07285974.1| LOW QUALITY PROTEIN: ribosome-associated GTPase EngA [Streptomyces sp. C] gi|302442527|gb|EFL14343.1| LOW QUALITY PROTEIN: ribosome-associated GTPase EngA [Streptomyces sp. C] Length = 496 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 135/465 (29%), Positives = 233/465 (50%), Gaps = 57/465 (12%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD-- 62 +A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ +A G F +VDT G Sbjct: 47 LAVVGRPNVGKSTLVNRIIGRREAVVEDKPGVTRDRVTYEAEWAGRRFKVVDTGGWEQDV 106 Query: 63 -GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 G + S+A Q E AI A ++F++D+K G T D A+ LR+ P+++ +NK+ Sbjct: 107 LGIDASVAA----QAEYAIETADAVVFVVDAKVGATDSDEAVVKLLRRAGKPVVLCANKV 162 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D + + + ++SL +S+ H GT ++ + ++ Sbjct: 163 DGQSGEADAAYLWSLGLGMPYPVSSLHGRGTGDMLDAVLEVLP----------------- 205 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 E+P + I P RIA++GRPNVGKS+L+N++ +R++ +G TRD Sbjct: 206 -EAPAQTFGG------AAIGGPRRIALIGRPNVGKSSLLNKVAREDRVVVNELAGTTRDP 258 Query: 242 V-------SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLD 294 V ++W + DTAG+RK + + + ++ +V E ++L+D Sbjct: 259 VDELIELGGVTWKF-------VDTAGIRKKVHLQQGADYYASLRTAAAVEKAEVAVILID 311 Query: 295 ATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSD--KLNLLQDLRT--KAIKNLPQIGD 350 T QD RI+ G A+V+A NKWD + + + L +++ T + + P++ Sbjct: 312 TTENISVQDQRIITMAVEAGRAIVIAYNKWDELDEERRYYLEREIETEMQQVSWAPRV-- 369 Query: 351 IYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRL 410 +S +TG ++ L+ ++ W+TR+ T LN++L + +P P + R+ Sbjct: 370 ----NVSAKTGRHMEKLVPAIETALAGWETRVPTGRLNAFLGEIVAAHPHPIRGGKQPRI 425 Query: 411 KYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIP 455 + TQ S PP F++F + + Y+R++ RLR F G P Sbjct: 426 LFGTQAGSKPPRFVLFAS--GFLEHGYRRFIERRLREEFGFEGNP 468 >gi|12045187|ref|NP_072998.1| GTP-binding protein EngA [Mycoplasma genitalium G37] gi|255660444|ref|ZP_05405853.1| GTP-binding protein EngA [Mycoplasma genitalium G37] gi|1723150|sp|P47571|DER_MYCGE RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|3844909|gb|AAC71553.1| GTP-binding protein engA [Mycoplasma genitalium G37] gi|166078673|gb|ABY79291.1| GTP-binding protein engA [synthetic Mycoplasma genitalium JCVI-1.0] Length = 448 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 141/477 (29%), Positives = 247/477 (51%), Gaps = 43/477 (9%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYG--QAIINGVIFNIVDTAG 59 ++T+AI+G NVGKSTLFNRL++K MA+V + P TRDR++G + + + F +DT G Sbjct: 1 MFTVAIIGRTNVGKSTLFNRLIQKPMAIVSDTPNTTRDRIFGIGEWLKRKIAF--IDTGG 58 Query: 60 IADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRK-KNIPIIIVS 118 + K + + + Q + A+++A I+FL+ + + D + L+K K+ P+I+V Sbjct: 59 LI-AKQTPLQQLIALQVQAALSQAKAIIFLVSLQEQLNSDDFYVAKVLKKNKDKPVILVV 117 Query: 119 NKMDT---RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 NK + + A+ + YSL F V ISA H +G +L ++ K Sbjct: 118 NKAENFNPKTAEETLKDYYSLGFGRPVVISAAHGIGIGDLMDLLVK-------------- 163 Query: 176 ENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQS 235 +N+ P EN K +R V+G+PNVGKS+LIN+L+ NR+L ++S Sbjct: 164 ----QNQLLPNENNDDLAK---------IRFCVIGKPNVGKSSLINQLVKQNRVLVSNES 210 Query: 236 GITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDA 295 G TRD++ + + DTAG+++ +I +E + K+ ++ ++++D Sbjct: 211 GTTRDAIDVPLKVNGEKFLLIDTAGIKRKGKINMGIETASYIKTKLAIARSNVILLMVDG 270 Query: 296 TIPFEKQDLRIVDSVFNTGHAVVLALNKWDMV---SDKLNLLQDLRTKAIKNLPQIGDIY 352 + P +QD I V++ +NKWD+V ++ N + + K+L ++ Sbjct: 271 SKPISEQDEVIGGLAQAALIPVIILVNKWDLVLKNNNTTNAYKKMLKLHFKHLDFAPVLF 330 Query: 353 INTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKY 412 I+ + + L+ + + I +T++ T LN +Q+ QL N PP + ++ Y Sbjct: 331 ISVLK---NQRLNTIFEQLKIIQSQLETKVATPLLNDVIQQAQLYNQPPLFKGKRLQITY 387 Query: 413 ITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIK 469 Q +S P F++FC P + SY R+L N++R NF + +PI + F+ SKN I+ Sbjct: 388 AVQTKSQIPHFVLFCNDPKYLHFSYARFLENKIRENFGFNSVPISLYFK-SKNARIR 443 >gi|220906981|ref|YP_002482292.1| GTP-binding protein EngA [Cyanothece sp. PCC 7425] gi|254783149|sp|B8HQE1|DER_CYAP4 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|219863592|gb|ACL43931.1| small GTP-binding protein [Cyanothece sp. PCC 7425] Length = 453 Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 132/464 (28%), Positives = 230/464 (49%), Gaps = 34/464 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL NRL +++A+V + PG+TRDR Y + F +VDT G+ Sbjct: 6 VAIVGRPNVGKSTLVNRLTGERVAIVHDQPGVTRDRTYRPSFWQDRDFLVVDTGGLVFAD 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 + + Q A++EA + + ++D + GIT D I +LR++++P+++ NK ++ Sbjct: 66 DTEFLPLIRQQVVTALSEARVAILVVDGQQGITAADEEIAQWLRQQSLPVLVAVNKCESP 125 Query: 124 --RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 +AQ E + L E ISA H GT EL + + Sbjct: 126 QQGLAQGA--EFWELGLGEPFPISAIHGNGTGELLDQVVSYLPPT--------------D 169 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 +++ +E+I + +A+VGRPNVGKS+L+N ++G R + SG TRD+ Sbjct: 170 QQAGEEDI--------------INVAIVGRPNVGKSSLLNAVVGEQRAIVSPISGTTRDA 215 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 + + DTAG+RK + E + ++ ++++ E +++LDA + Sbjct: 216 IDTLVERDGQRYRLIDTAGIRKQKNVDYGPEFFGINRAFKAIQRAEVVLLVLDALDGVTE 275 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTG 361 QD ++ + + G A V+ +NKWD V + D + + + L IG IS TG Sbjct: 276 QDQKLAGRIVDEGCACVIVVNKWDAVEKDSYTIYDYQHQVEQRLNFIGWSDHIFISAATG 335 Query: 362 EGLDDLMVSVLEINKLWKTRITTSYLNSWLQKT-QLQNPPPTIFNRYNRLKYITQIQSSP 420 + ++ + V + + R++TS +N L+ +PP + R ++ Y TQ+ S P Sbjct: 336 QRVEKIFERVHLAAEQHRRRVSTSVINEVLEDAVGWHSPPASRQGRQGKIYYGTQVSSQP 395 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 P+ +F P ++Y++Y+ + R G PIR+ ++ K Sbjct: 396 PTIALFVNDPALFKDNYRKYIEGQFRKQLGFRGTPIRLLWRGKK 439 Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 47/144 (32%), Positives = 76/144 (52%), Gaps = 6/144 (4%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 I +AIVG PNVGKS+L N +V ++ A+V G TRD + +G + ++DTAGI Sbjct: 177 IINVAIVGRPNVGKSSLLNAVVGEQRAIVSPISGTTRDAIDTLVERDGQRYRLIDTAGIR 236 Query: 62 DGKNCSIAKQMN--DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 KN + ++ AI A ++L ++D+ G+T D + + + +IV N Sbjct: 237 KQKNVDYGPEFFGINRAFKAIQRAEVVLLVLDALDGVTEQDQKLAGRIVDEGCACVIVVN 296 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVE 143 K D +++ Y IY D++ VE Sbjct: 297 KWDA--VEKDSYTIY--DYQHQVE 316 >gi|260072547|gb|ACX30447.1| Era/TrmE family GTP-binding protein [uncultured SUP05 cluster bacterium] gi|269468505|gb|EEZ80163.1| GTPase [uncultured SUP05 cluster bacterium] Length = 469 Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 142/469 (30%), Positives = 231/469 (49%), Gaps = 40/469 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIING---VIFNIVDTAGIA 61 I++VG PNVGKSTLFNRL + A+V + G+TRDR Y + +++ I+DT G+ Sbjct: 6 ISLVGRPNVGKSTLFNRLSNSRQALVSDFEGLTRDRQYAEILLDDDSQTFVTIIDTGGLT 65 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK- 120 G + + + Q A+ E+ +I F++ ++ G+ D I S LR+ II+V NK Sbjct: 66 -GDDNIVDSGIQGQVLNALEESDVIYFIVSARDGVIGLDLEIASQLRRLKKDIILVCNKA 124 Query: 121 --MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 +D +A E Y L E ISAEH G +L +H L ++ Sbjct: 125 EGLDESLAA----EFYELGLGEPRLISAEHSQGIGDL------------IDHTLPLLPQA 168 Query: 179 KRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 EE+ E I +AV+GRPNVGKSTLINR+LG R+L G T Sbjct: 169 TIEEEAEVEGIA---------------VAVLGRPNVGKSTLINRILGEERVLAIDMPGTT 213 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RDS+ I + + + DTAG+R+ E +E ++ K++ ++ I++LDA Sbjct: 214 RDSIYIPFEREGQKYTLIDTAGIRRKRSTHEKIEIFSIIKAIDALDRSHVVILVLDAREG 273 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 +QD ++ + + G A+++ +NKWD + D +++ K L + ++ IS Sbjct: 274 VTEQDATLLGMIADKGRALLIVINKWDGLDDYQK--SEVKRKLDVKLSFVNYASVHYISA 331 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 G G+ L +++ T+ +TS LN L+ + PP + R ++KY+ Q Sbjct: 332 LHGSGVGKLFAPIIKSYTNASTQHSTSTLNKILESANAGHQPPPVKGRRLKIKYVNQTDV 391 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 PP+ +P +Y RYL N L+ P+R+ ++S +NP+ Sbjct: 392 FPPTLTFHGNHLQNVPNAYDRYLKNFFINALKLTNTPLRIEYKSGENPF 440 >gi|157412804|ref|YP_001483670.1| GTP-binding protein EngA [Prochlorococcus marinus str. MIT 9215] gi|166920102|sp|A8G3A3|DER_PROM2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|157387379|gb|ABV50084.1| GTP-binding protein (HSR1-related) [Prochlorococcus marinus str. MIT 9215] Length = 457 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 135/469 (28%), Positives = 232/469 (49%), Gaps = 31/469 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAI+G PNVGKSTL NRL + A+V + PG+TRDR Y A G F IVDT G+ Sbjct: 5 TIAIIGRPNVGKSTLVNRLCQSNDAIVFDKPGVTRDRTYQNASWGGKEFQIVDTGGLVFD 64 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD- 122 + ++ Q LA+ EA L L ++D G+T D +I +LR + I+ NK + Sbjct: 65 DDSEFLPEIRTQVFLALEEASLALLVVDGNQGVTDGDLSIAKWLRNSSCKTIVAVNKCES 124 Query: 123 TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 T + E + L E +SA H GT +L ++ E+ ENN R++ Sbjct: 125 TTLGISLASEFWKLGLGEPNPVSAIHGSGTGDLLDLVIG-----------ELPENNIRDD 173 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 E + + ++++GRPNVGKS+L+N + G R + SG T DS+ Sbjct: 174 E------------------EKIMMSIIGRPNVGKSSLLNSICGEKRAIVSDISGTTTDSI 215 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 ++ +I DTAG+R+ + E + ++ +S+ + ++++DA Q Sbjct: 216 DTLIKKGDNYWKIIDTAGIRRKKNVKYGTEFFGINRAFKSIDRSDVCVLVIDAVDGVTDQ 275 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D ++ + G A ++ +NKWD+V + + + + L + + IS TG+ Sbjct: 276 DQKLAGRIEEQGRACIIVVNKWDLVEKNSSTIYQVEKELRSKLYFLHWSKMIFISALTGQ 335 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKT-QLQNPPPTIFNRYNRLKYITQIQSSPP 421 +D++ L + R+TTS +N L+++ ++PP + RL Y TQ+++ PP Sbjct: 336 RVDNIFEHALNAVNQHRRRVTTSVVNEVLKESISWKSPPTKRSGKQGRLYYGTQVKNKPP 395 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +F +F P +Y+RY+ ++R+N G P+ + ++ + + K Sbjct: 396 TFTLFVNDPKLFGITYRRYIEKQIRLNLGFEGTPLILLWRGKQQRALNK 444 >gi|318042392|ref|ZP_07974348.1| GTP-binding protein Der [Synechococcus sp. CB0101] Length = 454 Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 133/467 (28%), Positives = 238/467 (50%), Gaps = 39/467 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKSTL NRL K + A+V + PG+TRDR Y F +VDT G+ Sbjct: 6 VAIIGRPNVGKSTLVNRLCKSREAIVHDEPGVTRDRTYQDGYWRDRHFKVVDTGGLVFDD 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + ++ +Q LA++EA + + + D + G+T D +I +LR N+P+++ NK ++ Sbjct: 66 DSEFLPEIREQANLALSEASVAVVIADGQQGLTAADESIAEWLRGHNVPVLLAVNKCESP 125 Query: 125 IAQRNF-YEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 A + E +SL E ISA H GT +L K +H Sbjct: 126 EAGLSMAAEFWSLGLGEPYPISAIHGAGTGDLLD--------KLVDHL------------ 165 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 P E +T E +P+++A++GRPNVGKS+L+N + G R + G TRD++ Sbjct: 166 PPTEELTGE---------EPIQLAIIGRPNVGKSSLLNAICGEKRAIVSPIRGTTRDTID 216 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + + H +I DTAG+R+ + E + +S +++ + ++++D +QD Sbjct: 217 TTIEREGHTWKILDTAGIRRKRSVNYGPEFFGINRSFKAIERSDVCVLVIDVLDGVTEQD 276 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLL----QDLRTKAIKNLPQIGDIYINTISGR 359 R+ + G A V+ +NKWD + + + ++LR K + L ++ + +SG+ Sbjct: 277 QRLAGRIEEDGRACVVVVNKWDAIEKDSHTMPAMEKELRAK-LYFLDWAPMLFTSALSGQ 335 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKT-QLQNPPPTIFNRYNRLKYITQIQS 418 + + + +E + + R++TS +N LQ+ ++PP + R R+ Y TQ+ + Sbjct: 336 RVQSIFAIAAVAVEQH---RRRVSTSVVNEVLQEAVSWRSPPTSRGGRQGRIYYGTQVAT 392 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 PPSF +F P ++Y+RY+ ++R G P+++ ++ + Sbjct: 393 RPPSFTLFVNDPKLFGDTYRRYVERQIREGLGFEGSPLKLFWRGKQQ 439 >gi|84496370|ref|ZP_00995224.1| GTP-binding protein EngA [Janibacter sp. HTCC2649] gi|84383138|gb|EAP99019.1| GTP-binding protein EngA [Janibacter sp. HTCC2649] Length = 497 Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 130/451 (28%), Positives = 224/451 (49%), Gaps = 33/451 (7%) Query: 12 NVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA-DGKNCSIAK 70 NVGKSTL NR++ ++ AVV + PG+TRDR+ A G F +VDT G + D K + Sbjct: 70 NVGKSTLVNRIIGRREAVVEDVPGVTRDRVAYDAEWTGTNFTLVDTGGWSVDAKGIHL-- 127 Query: 71 QMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQRNF 130 ++ +Q E+A+ A +LF++D+ G T D + LR+ P+I+V+NK+D + + + Sbjct: 128 RVAEQAEIAVELADAVLFVVDAVVGATDDDQNVVKLLRRSGKPVILVANKVDDQRTEADA 187 Query: 131 YEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEESPKENIT 190 +++L + +SA H G+ ++ I + K Sbjct: 188 AALWNLGLGQPWPVSALHGRGSGDVLDAILAVLPDK------------------------ 223 Query: 191 SEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKN 250 S P R+A++GRPNVGKS+++N+L G R++ +G TRD V Sbjct: 224 --SAVSAYQRGGPRRVALLGRPNVGKSSMLNKLAGSERVVVDDVAGTTRDPVDEFIELGG 281 Query: 251 HPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSV 310 DTAG+R+ T + ++ ++ E +VL+DA+ +QD+R++ V Sbjct: 282 KTWRFVDTAGIRRRVHQTRGADFYASLRTQTALEKAEVAVVLVDASEAITEQDVRVIQQV 341 Query: 311 FNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVS 370 ++G A+V+A NKWD+ ++ L + ++L QI +S TG +D L+ + Sbjct: 342 VDSGRALVIAYNKWDLTDEERRHY--LAREIERDLVQIPWAPHVNVSAATGRHMDRLVPA 399 Query: 371 VLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFLIFCTFP 430 + + W R+ T LN++L + +P P + R+ + TQ + PP F++F + Sbjct: 400 LETSLESWDYRVPTGRLNAFLGEIVAGHPHPVRGGKQPRILFATQASTRPPRFVLFAS-- 457 Query: 431 NKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 I Y+R++ RLR F G PI + + Sbjct: 458 GFIEAGYRRFVERRLREEFGFEGTPIEVSVR 488 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 40/144 (27%), Positives = 70/144 (48%), Gaps = 7/144 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA--- 61 +A++G PNVGKS++ N+L + VV + G TRD + + G + VDTAGI Sbjct: 237 VALLGRPNVGKSSMLNKLAGSERVVVDDVAGTTRDPVDEFIELGGKTWRFVDTAGIRRRV 296 Query: 62 -DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + + QT A+ +A + + L+D+ IT D + + ++I NK Sbjct: 297 HQTRGADFYASLRTQT--ALEKAEVAVVLVDASEAITEQDVRVIQQVVDSGRALVIAYNK 354 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEI 144 D +R Y ++ +++V+I Sbjct: 355 WDLTDEERRHYLAREIE-RDLVQI 377 >gi|254818899|ref|ZP_05223900.1| GTP-binding protein EngA [Mycobacterium intracellulare ATCC 13950] Length = 466 Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 144/459 (31%), Positives = 226/459 (49%), Gaps = 42/459 (9%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA-DG 63 +A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ A+ G F + DT G D Sbjct: 32 VAVVGRPNVGKSTLVNRILGRREAVVQDIPGVTRDRVSYDALWTGRRFVVQDTGGWEPDA 91 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 K + + + +Q +A+ A ++ ++D+ G T D A L + P+ + +NK+D+ Sbjct: 92 KG--LQQLVAEQASVAMRTADAVILVVDAVVGATSADEAAARILLRSGKPVFLAANKVDS 149 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 A+ + ++SL E ISA H G ++L + +E Sbjct: 150 DKAEADAAMLWSLGLGEPHAISAMHGRGVADLLDEVLAALPAV--------------SEV 195 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 PK P R+A+VG+PNVGKS+L+N+L G R + +G T D V Sbjct: 196 GPKPG-------------GPRRVALVGKPNVGKSSLLNKLAGDQRSVVHDVAGTTVDPVD 242 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + DTAG+R+ E ++ ++ E IVL+DA+ P +QD Sbjct: 243 SLIQLGDRVWRFVDTAGLRRKVGQASGHEFYASVRTHSAIDAAEVVIVLIDASDPLTEQD 302 Query: 304 LRIVDSVFNTGHAVVLALNKWDMV-SDKLNLLQ---DLRTKAIKNLPQIGDIYINTISGR 359 R++ V G A+VLA NKWD+V D+ LL+ D ++ P++ IS + Sbjct: 303 QRVLSMVIEAGRALVLAFNKWDLVDEDRRELLEREIDRELVQLRWAPRV------NISAK 356 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 TG + L+ ++ W RI T LNSWL++ PPP + R+ + TQ + Sbjct: 357 TGRAVQKLVPAMETSLASWDARIATGPLNSWLKEVVAATPPPVRGGKQPRILFATQATAR 416 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 PP+F++F T + Y+R+L RLR F G PIR+ Sbjct: 417 PPTFVLFTT--GFLEAGYRRFLERRLREAFGFEGSPIRI 453 >gi|312196768|ref|YP_004016829.1| ribosome-associated GTPase EngA [Frankia sp. EuI1c] gi|311228104|gb|ADP80959.1| ribosome-associated GTPase EngA [Frankia sp. EuI1c] Length = 438 Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 142/457 (31%), Positives = 224/457 (49%), Gaps = 31/457 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ A +G F +VDT G + Sbjct: 2 LAVVGRPNVGKSTLVNRILGRRAAVVEDVPGVTRDRVAYDANWSGRRFTLVDTGGW-EPD 60 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +A +++ Q + A+ A +LF++D+ G T D A+ L + P+++ +NK+D + Sbjct: 61 ARGLAGRVSAQAQRALATADAVLFVVDATVGATDADEAVARVLHRSGRPVVLAANKVDDQ 120 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + ++ L E +SA H G+ +L + E+ Sbjct: 121 RLESDTAALWGLGLGEPYPVSALHGRGSGDLLDAVLAALP------------------EA 162 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P E E P R+A+VGRPNVGKS+++NRL G R L +G TRD V Sbjct: 163 PPERFDEE--------DGPRRVALVGRPNVGKSSMLNRLAGEERALVHDVAGTTRDPVDE 214 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 DTAG+R+ + E + ++ ++ E IVLLDA +QD Sbjct: 215 LVTVGGEQWLFIDTAGLRRRVGQSSGAEYYSSLRTAAAIEAAEVAIVLLDAGETLTEQDQ 274 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 R+V V + G A+VLA NKWD++ + L L + ++L ++ +S TG Sbjct: 275 RVVQMVVDAGRALVLAFNKWDLLDEDRRLT--LEKEISRDLARVAWAPRVNVSALTGRAT 332 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 D L ++ W TRI T LN WL + PPP + ++ + TQ PP F+ Sbjct: 333 DRLAPALHTSLDSWGTRIPTGRLNQWLGEVVAATPPPPRGGKIPKVLFATQAGVRPPRFV 392 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 +F T + Y+R+L RLR +F G P+ + + Sbjct: 393 VFAT--AFLEPGYRRFLERRLREDFGFVGTPLEISIR 427 >gi|159902929|ref|YP_001550273.1| GTP-binding protein EngA [Prochlorococcus marinus str. MIT 9211] gi|226706248|sp|A9BE09|DER_PROM4 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|159888105|gb|ABX08319.1| GTP-binding protein (HSR1-related) [Prochlorococcus marinus str. MIT 9211] Length = 456 Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 132/472 (27%), Positives = 234/472 (49%), Gaps = 38/472 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKSTL NRL + A+V + PG+TRDR Y A F +VDT G+ Sbjct: 6 VAIIGRPNVGKSTLVNRLCGSREAIVDDQPGVTRDRTYQDAFWADREFKVVDTGGLVFDD 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 ++ Q +LA++EA + L ++D + G+T D I S+LR P ++ NK ++ Sbjct: 66 ESEFLPEIRQQAKLALSEASVALIVVDGQEGVTTADKEIASWLRHCECPTLVAVNKCESP 125 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + +SL E +SA H GT EL + + Sbjct: 126 EQGLAMAADFWSLGLGEPYPVSAIHGSGTGELLDQVILLLPS------------------ 167 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 K S + +P+++A++GRPNVGKS+L+N + G R + S G TRD++ Sbjct: 168 ----------KESSEEEDEPIQLAIIGRPNVGKSSLLNSICGETRAIVSSIRGTTRDTID 217 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + ++ DTAG+R+ ++ E + +S++++ + ++++DA +QD Sbjct: 218 TLLKREQQAWKLIDTAGIRRRRSVSYGPEYFGINRSLKAIERSDVCLLVIDALDGVTEQD 277 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLL----QDLRTKAIKNLPQIGDIYINTISGR 359 R+ + G A ++ +NKWD V + ++LR+K + L ++ + ++G+ Sbjct: 278 QRLAGRIEQEGKACLVVVNKWDAVEKDTYTMPLMEKELRSK-LYFLDWADMLFTSALTGQ 336 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKT-QLQNPPPTIFNRYNRLKYITQIQS 418 + + +L +E + + R++TS +N L + ++PP T R RL Y TQ+ + Sbjct: 337 RVQLIFNLASLAVEQH---RRRVSTSVVNEVLSEALTWRSPPTTRGGRQGRLYYGTQVST 393 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 PPSF +F P +SY+RY+ +LR G P+++ ++ + +K Sbjct: 394 QPPSFSLFVNEPKLFGDSYRRYIERQLREGLGFEGTPLKLFWRGKQQRAAQK 445 >gi|15834701|ref|NP_296460.1| GTP-binding protein EngA [Chlamydia muridarum Nigg] gi|270284867|ref|ZP_06194261.1| GTP-binding protein EngA [Chlamydia muridarum Nigg] gi|301336246|ref|ZP_07224448.1| GTP-binding protein EngA [Chlamydia muridarum MopnTet14] gi|14194736|sp|Q9PLM3|DER_CHLMU RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|7190111|gb|AAF38958.1| GTP-binding protein, Era/ThdF family [Chlamydia muridarum Nigg] Length = 490 Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 145/487 (29%), Positives = 243/487 (49%), Gaps = 35/487 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAI+G PNVGKS++FNRL K+ +A+V G TRDRLYG+ I +++DT G+ Sbjct: 3 IAILGRPNVGKSSIFNRLCKRSLAIVNAQEGTTRDRLYGEIRAWDSIVHVIDTGGVDQES 62 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 KQ++ Q A EA ++L ++D + GIT D + L P+I+V NK D++ Sbjct: 63 TDRFQKQIHKQALAAAEEASVLLLVVDIRCGITKQDEELAKRLLPLKKPLILVMNKADSQ 122 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPN--------------- 169 + +E Y L ++ SA HD L I ++ + P+ Sbjct: 123 QDLQRIHEFYGLGISNMIATSASHDKHIDVLLERIRQVAEIPLPSAEEQENTQEEEFSSK 182 Query: 170 ------HPLE---MIENNKRNEESP---KENITSEGKSSVKNISKPLRIAVVGRPNVGKS 217 H + EN ++E +E + S+ N +PL++A++G PNVGKS Sbjct: 183 ESSVALHTFADETLFENESLSQEEASFLEELVAQTTTPSISN--RPLKVALIGHPNVGKS 240 Query: 218 TLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVK 277 +++N LL R +T + G TRD+V +S+ + + DTAG+RK I S+E + Sbjct: 241 SIVNALLKEERCITDNSPGTTRDNVDVSYTYNDKEYVFIDTAGLRKAKSIKNSVEWMSSS 300 Query: 278 KSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD-MVSDKL-NLLQ 335 ++ +++ + ++++DAT QD RI+ + V+ +NKWD M ++ + +Q Sbjct: 301 RTEKAISRADICLLVIDATQQLSYQDKRILSLIARYKKPHVILVNKWDLMFGVRMEHYVQ 360 Query: 336 DLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQ 395 DLR K P IG I IS + L + +V ++ + T+++TS +N L Sbjct: 361 DLR----KMDPYIGQARILCISAKQRRNLSQIFSAVDDVYTIATTKLSTSLVNKVLAGAM 416 Query: 396 LQNPPPTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIP 455 ++ P I + R+ Y +P SFL+F + + Y+ YL N L+ F+L GIP Sbjct: 417 QRHHPQVINGKRLRIYYAIHKTVTPFSFLLFINSNTLLTKPYELYLKNTLKAAFNLYGIP 476 Query: 456 IRMCFQS 462 + +++ Sbjct: 477 FDLEYKA 483 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/126 (26%), Positives = 65/126 (51%), Gaps = 2/126 (1%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 +RIA++GRPNVGKS++ NRL + + +Q G TRD + + + + DT G+ + Sbjct: 1 MRIAILGRPNVGKSSIFNRLCKRSLAIVNAQEGTTRDRLYGEIRAWDSIVHVIDTGGVDQ 60 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 S T+ +++ K+++ + ++++D KQD + + ++L +NK Sbjct: 61 ES--TDRFQKQIHKQALAAAEEASVLLLVVDIRCGITKQDEELAKRLLPLKKPLILVMNK 118 Query: 324 WDMVSD 329 D D Sbjct: 119 ADSQQD 124 >gi|284050435|ref|ZP_06380645.1| GTP-binding protein EngA [Arthrospira platensis str. Paraca] gi|291569696|dbj|BAI91968.1| GTP-binding protein [Arthrospira platensis NIES-39] Length = 453 Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 137/469 (29%), Positives = 239/469 (50%), Gaps = 49/469 (10%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKSTL NRL + + A+V + PG+TRDR Y A F +VDT G+ Sbjct: 6 VAIIGRPNVGKSTLVNRLTQTQDAIVHDQPGMTRDRTYRSAYWQDREFIVVDTGGLVFDD 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD-- 122 + + +Q +A+ EA + ++D + G T D AI S+LR++ +PI++ NK + Sbjct: 66 DTEFVPLIREQALMALAEATAAILVVDGQTGPTGGDEAIASWLRQQKVPILLAVNKCESP 125 Query: 123 ----TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 T+ AQ F+E L IS+ H GT EL + + H E++ Sbjct: 126 TQGLTQAAQ--FWE---LGLGTPFPISSIHGNGTGELLDTLIE--------HLPSSTEDD 172 Query: 179 KRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 NEE LR+A+VGRPNVGKS+L+N LG R + SG T Sbjct: 173 D-NEE--------------------LRVAIVGRPNVGKSSLLNTFLGQERAIVSPISGTT 211 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RD++ + + DTAG+R+ + E + ++ +++R + + ++DA Sbjct: 212 RDAIDTIVEHNGNTYRLVDTAGIRRKKHVEYGAEFFGINRAFKAIRRADVVLFVIDAVEG 271 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVS-DKLNLLQD---LRTKAIKNLPQIGDIYIN 354 QD ++ + + G A V+ +NKWD V D +L+ +R++ + L I+++ Sbjct: 272 VTDQDQKLAGRIADDGRACVIVVNKWDAVEKDSYTILEYEKVMRSR-LYFLDWADMIFVS 330 Query: 355 TISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKT-QLQNPPPTIFNRYNRLKYI 413 ++G+ E + L+ E N + R++T+ +N +++ + +PP + R ++ Y Sbjct: 331 AMTGQRVEKIFKLVDKAAEEN---RRRVSTAVINEVIEEAVRWHSPPTSRQGRQGKIYYG 387 Query: 414 TQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 TQ+ S PP+ ++F P + ++Y+RY+ ++ R +G PIR+ ++ Sbjct: 388 TQVTSGPPTIVLFVNDPKRFGDNYRRYMESQFRQQLGFAGTPIRLLWRG 436 >gi|289548228|ref|YP_003473216.1| ribosome-associated GTPase EngA [Thermocrinis albus DSM 14484] gi|289181845|gb|ADC89089.1| ribosome-associated GTPase EngA [Thermocrinis albus DSM 14484] Length = 430 Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 130/461 (28%), Positives = 229/461 (49%), Gaps = 34/461 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + IVG PNVGKSTLFNRLV ++ +V PG+TRD + Q F + DT GI + K Sbjct: 4 VLIVGRPNVGKSTLFNRLVGRRKNIVSPIPGVTRDIVEAQVQWKDRKFIVADTGGIME-K 62 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +++ D+ AI +A +ILF++D + GIT D I L + +V NK+D + Sbjct: 63 GDELTREVRDKVLKAIRKADVILFVVDGREGITASDQNIAKILYPYRDKVFLVVNKIDNK 122 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 ++N YE YSL F+ + ISAEH G +L + K+ Sbjct: 123 SLEKNLYEFYSLGFERVFGISAEHGRGVGDLLDAVLPFLKED------------------ 164 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 E ++ EG ++++ VGRPNVGKS+LIN ++G ++L +G TRD+V + Sbjct: 165 --EELSYEG----------IKVSFVGRPNVGKSSLINAIMGEEKVLVSPVAGTTRDAVEL 212 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + + DTAGMR+PS++ +E +V +S++++ + ++LD T QD Sbjct: 213 PFEYGGERFVLVDTAGMRRPSKVEYGVEFFSVGRSIKAIELSDVVCLVLDLTEGVTHQDQ 272 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 +I + V+ NK D+V + L+ + + L ++ + I R G+ Sbjct: 273 KIGGLIERRYRGCVIVGNKVDLVKTPPSQLESYIRQRLHFLDFAPVVFTSAIQKR---GV 329 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 +DL+ ++ + + + TS++N ++K + PP+ + ++ Y Q PP+ + Sbjct: 330 EDLLKTITLVYADYVKQHKTSFVNRAVEKVLAEKEPPSYQGKDLKVYYAFQEGIKPPTVV 389 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 I +P Y ++ RLR ++ P+++ + + Sbjct: 390 IITNYPEGWKAHYVKFFTRRLREYLNIKHAPLKLVIRGREQ 430 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 52/169 (30%), Positives = 79/169 (46%), Gaps = 14/169 (8%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAG-MRK 263 R+ +VGRPNVGKSTL NRL+G + + G+TRD V WK+ + DT G M K Sbjct: 3 RVLIVGRPNVGKSTLFNRLVGRRKNIVSPIPGVTRDIVEAQVQWKDRKFIVADTGGIMEK 62 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 +T + K +K ++R + + ++D D I ++ V L +NK Sbjct: 63 GDELTREVRDKVLK----AIRKADVILFVVDGREGITASDQNIAKILYPYRDKVFLVVNK 118 Query: 324 WDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVL 372 D S + NL + +G + IS G G+ DL+ +VL Sbjct: 119 IDNKSLEKNLYE---------FYSLGFERVFGISAEHGRGVGDLLDAVL 158 >gi|145224077|ref|YP_001134755.1| GTP-binding protein EngA [Mycobacterium gilvum PYR-GCK] gi|315444414|ref|YP_004077293.1| hypothetical protein Mspyr1_28320 [Mycobacterium sp. Spyr1] gi|145216563|gb|ABP45967.1| small GTP-binding protein [Mycobacterium gilvum PYR-GCK] gi|315262717|gb|ADT99458.1| small GTP-binding protein domain/GTP-binding conserved hypothetical protein [Mycobacterium sp. Spyr1] Length = 479 Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 145/459 (31%), Positives = 229/459 (49%), Gaps = 41/459 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA-DG 63 +A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ A G F + DT G D Sbjct: 43 LAVVGRPNVGKSTLVNRILGRREAVVQDIPGVTRDRVSYDASWLGQKFVVQDTGGWEPDA 102 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 K + + + DQ +A+ A I+F++D+ G T D A L++ P+ + +NK+D Sbjct: 103 KG--LQQLVADQASVAMRTADAIIFVVDAVVGATTADEAAAKLLQRSGKPVFLAANKVDN 160 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + ++SL E ISA H G ++L + Sbjct: 161 ERGEADAAALWSLGLGEPHPISAMHGRGVADLLDRVI----------------------- 197 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 E++ + + + P R+A+VG+PNVGKS+L+NRL G R + +G T D V Sbjct: 198 ---EDLPTISEVNAGGGGGPRRVALVGKPNVGKSSLLNRLSGDERSVVHDVAGTTVDPVD 254 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 DTAG+R+ E ++ ++ + E IVL+DA+ P +QD Sbjct: 255 SLIEMDGKLWRFVDTAGLRRKVGQASGHEFYASVRTHGAIDSAEVAIVLIDASQPLTEQD 314 Query: 304 LRIVDSVFNTGHAVVLALNKWDMV-SDKLNLLQ---DLRTKAIKNLPQIGDIYINTISGR 359 R++ V G A+VLA NKWD+V D+ LL DL+ ++ P++ IS + Sbjct: 315 QRVLSMVIEAGRALVLAFNKWDLVDEDRRYLLDREIDLQLAQLQWAPRV------NISAK 368 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 TG + L+ ++ W RITT LN++L++ PPP + R+ + TQ S Sbjct: 369 TGRAVQKLVPALETSLASWDKRITTGQLNTFLKEVVAATPPPVRGGKQPRILFATQATSR 428 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 PP+F++F + + Y+R+L RLR F G PIR+ Sbjct: 429 PPTFVLFTS--GFLEAGYRRFLERRLRETFGFEGSPIRI 465 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 55/173 (31%), Positives = 85/173 (49%), Gaps = 12/173 (6%) Query: 201 SKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAG 260 + P +AVVGRPNVGKSTL+NR+LG + G+TRD VS +W + DT G Sbjct: 38 APPPVLAVVGRPNVGKSTLVNRILGRREAVVQDIPGVTRDRVSYDASWLGQKFVVQDTGG 97 Query: 261 MRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLA 320 ++ L+Q ++ ++RT + I ++DA + D + +G V LA Sbjct: 98 WEPDAK---GLQQLVADQASVAMRTADAIIFVVDAVVGATTADEAAAKLLQRSGKPVFLA 154 Query: 321 LNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 NK D N + A+ +L +G+ + IS G G+ DL+ V+E Sbjct: 155 ANKVD------NERGEADAAALWSL-GLGEPH--PISAMHGRGVADLLDRVIE 198 >gi|331697587|ref|YP_004333826.1| GTP-binding protein engA [Pseudonocardia dioxanivorans CB1190] gi|326952276|gb|AEA25973.1| GTP-binding protein engA [Pseudonocardia dioxanivorans CB1190] Length = 486 Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 142/461 (30%), Positives = 230/461 (49%), Gaps = 36/461 (7%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI--- 60 T+A+VG PNVGKSTL NRL+ ++ AVV + PG+TRDR+ A+ NG F +VDT G Sbjct: 48 TLAVVGRPNVGKSTLVNRLIGRREAVVQDVPGVTRDRISYDALWNGRRFTLVDTGGWEPD 107 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 A G ++A Q ELA+ A ++ ++D+ G T D A+ LR+ + P+I+V+ K Sbjct: 108 ATGLQGAVAA----QAELAMRTADAVMLVVDASVGATATDEAVARVLRRSDRPVILVATK 163 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D + ++ L E +S H G+ +L + + Sbjct: 164 VDDDRLTSDTAALWRLGLGEPHPVSGLHGRGSGDLLDAVLDLLP---------------- 207 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 E+P++++ G S P R+A+VG+PNVGKS+L+N++ G R + +G T D Sbjct: 208 --ETPRDDV---GAGS----GGPRRVALVGKPNVGKSSLLNKVSGELRSVVHDVAGTTVD 258 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 V DTAG+RK R E ++ ++ E +VL+DA+ P Sbjct: 259 PVDSLVELDGEIWRFVDTAGLRKRVRTASGTEFYASLRTQSAIEAAEVAVVLIDASEPIA 318 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 +QD R++ V G A+VL NKWD+V + L ++ + ++L ++ +S T Sbjct: 319 EQDQRVIGMVEEAGRALVLVFNKWDLVDEDRRLA--MKRELERDLVRVRWAERVNVSALT 376 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G + + ++ W RI T LN WL PPP + ++ + TQ Q+ P Sbjct: 377 GRSVAKIAPALRTALASWDQRIPTGRLNGWLADVIAATPPPVRGGKQPKVLFATQAQTRP 436 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 P+F++F T + Y+R+L RLR F +G P+R+ + Sbjct: 437 PTFVLFTT--GFLEAGYRRFLERRLREEFGFTGSPVRLSVR 475 >gi|242309125|ref|ZP_04808280.1| GTP-binding protein engA [Helicobacter pullorum MIT 98-5489] gi|239524166|gb|EEQ64032.1| GTP-binding protein engA [Helicobacter pullorum MIT 98-5489] Length = 461 Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 144/456 (31%), Positives = 236/456 (51%), Gaps = 19/456 (4%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 +IAI+G PN GKS+LFNR K ++A+ G TRD +I F ++DT GI Sbjct: 7 SIAIMGRPNAGKSSLFNRFCKSRIAITSEVAGTTRDVKKANILILDTPFLLLDTGGI--D 64 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 ++ S+ ++++ + LA A LIL+L+D K D I L+KKN + +V NK+D Sbjct: 65 QSDSLFAKVSEHSHLAGENADLILYLVDGKMPPNEIDKKIFYSLQKKNPNVFLVVNKIDN 124 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 Q +E + + IS H+ G L I K+ K+ E E+ EE Sbjct: 125 EKEQEKAWEFAEFGTQNLFFISVSHNRGIGRLEDSIVKLLKKDSLTWLFEGAES----EE 180 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 S ++ + +EG S I + I ++GR NVGKS+L+N LL R + +G T D V Sbjct: 181 SLEDFLEAEGADSQSEI---INIGIIGRVNVGKSSLLNALLKQERSVVSEVAGTTIDPVD 237 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + + DTAG+R+ +I E LE+ + ++ + ++ + I++LDA+ PF + D Sbjct: 238 EKGEIEGRRVNFVDTAGIRRRGKI-EGLEKFALNRTREVLKRTDIVILVLDASKPFVELD 296 Query: 304 LRIVDSVFNTGHAVVLALNKWDMV-SDKLNLLQD--LRTKAIKNLPQIGDIYINTISGRT 360 +I + V++ LNKWD+ D +L+D LR K ++ P I TIS + Sbjct: 297 EKIAGLIDEFKLGVIVVLNKWDIAYKDYKAILEDFRLRFKFLEYAP------ILTISAKN 350 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G + L ++++ + + +RI T+ LN +++ ++P P+ + ++ Y TQ ++ P Sbjct: 351 GRHIQKLEQEIVKVYQNFSSRIPTAKLNEIIKEATSRHPIPSDRGKIVKVYYATQFETKP 410 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 P + PN + SYKRYL+N LR F SG+ I Sbjct: 411 PQIALIMNRPNSLHFSYKRYLVNFLREKFDFSGVRI 446 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 85/172 (49%), Gaps = 11/172 (6%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI- 60 I I I+G NVGKS+L N L+K++ +VV G T D + + I G N VDTAGI Sbjct: 197 IINIGIIGRVNVGKSSLLNALLKQERSVVSEVAGTTIDPVDEKGEIEGRRVNFVDTAGIR 256 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 GK + K ++T + +++ ++D+ D I + + + +I+V NK Sbjct: 257 RRGKIEGLEKFALNRTREVLKRTDIVILVLDASKPFVELDEKIAGLIDEFKLGVIVVLNK 316 Query: 121 MDTRIAQRNFYEIYS--------LDFKEIVEISAEHDLGTSELHSVIFKIFK 164 D IA +++ I L++ I+ ISA++ +L I K+++ Sbjct: 317 WD--IAYKDYKAILEDFRLRFKFLEYAPILTISAKNGRHIQKLEQEIVKVYQ 366 >gi|297195224|ref|ZP_06912622.1| GTP-binding protein engA [Streptomyces pristinaespiralis ATCC 25486] gi|297152707|gb|EFH31948.1| GTP-binding protein engA [Streptomyces pristinaespiralis ATCC 25486] Length = 494 Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 135/469 (28%), Positives = 233/469 (49%), Gaps = 54/469 (11%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD-- 62 +A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ +A G F +VDT G Sbjct: 59 LAVVGRPNVGKSTLVNRIIGRREAVVEDKPGVTRDRVTYEAEWAGRRFKVVDTGGWEQDV 118 Query: 63 -GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 G + S+A Q E AI A ++F++DS G T D A+ LR+ P+++ +NK+ Sbjct: 119 LGIDASVAA----QAEYAIEAADAVVFVVDSTVGATDTDEAVVKLLRRAGKPVVLCANKV 174 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D + + ++SL + +S+ H GT ++ + + Sbjct: 175 DGPSGEADATALWSLGLGQPHPVSSLHGRGTGDMLDAVLEALP----------------- 217 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 E+P + + + P RIA++GRPNVGKS+L+N++ R++ +G TRD Sbjct: 218 -EAPAQTFGT-------AVGGPRRIALIGRPNVGKSSLLNKVAREERVVVNELAGTTRDP 269 Query: 242 V-------SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLD 294 V ++W + DTAG+RK + + + ++ +V E ++L+D Sbjct: 270 VDELIELGGVTWKF-------VDTAGIRKRVHLQQGADYYASLRTAAAVEKAEVAVILID 322 Query: 295 ATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSD--KLNLLQDLRTKAIKNLPQIGDIY 352 AT QD RI+ G A+V+A NKWD + + + L +++ T+ + Q+ Sbjct: 323 ATENISVQDQRIITMAVEAGRAIVVAYNKWDDLDEERRYYLEREIETE----MQQVAWAP 378 Query: 353 INTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKY 412 +S TG ++ L+ ++ W+TR+ T LN++L + +P P + R+ + Sbjct: 379 RVNVSALTGRHMEKLVPAIETALAGWETRVPTGRLNAFLGEIVAAHPHPIRGGKQPRILF 438 Query: 413 ITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 TQ + PP F++F + + Y+R++ RLR F G PI + + Sbjct: 439 GTQAGTKPPRFVLFAS--GFLEHGYRRFVERRLREEFGFEGTPIHISVR 485 >gi|126695749|ref|YP_001090635.1| GTP-binding protein EngA [Prochlorococcus marinus str. MIT 9301] gi|166225836|sp|A3PBA9|DER_PROM0 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|126542792|gb|ABO17034.1| GTP-binding protein (HSR1-related) [Prochlorococcus marinus str. MIT 9301] Length = 457 Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 134/469 (28%), Positives = 232/469 (49%), Gaps = 31/469 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAI+G PNVGKSTL NRL + A+V + PG+TRDR Y A G F IVDT G+ Sbjct: 5 TIAIIGRPNVGKSTLVNRLCQSNDAIVFDKPGVTRDRTYQNASWGGKEFQIVDTGGLVFD 64 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD- 122 + ++ Q LA+ EA L L ++D G+T D +I +LR + I+ NK + Sbjct: 65 DDSEFLPEIRTQVFLALEEASLALLVVDGNQGVTDGDLSIAKWLRNSSCKTIVAVNKCES 124 Query: 123 TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 T + E + L E +SA H GT +L ++ E+ ENN +++ Sbjct: 125 TTLGISLASEFWKLGLGEPNPVSAIHGSGTGDLLDLVIG-----------ELPENNIQDD 173 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 E + + ++++GRPNVGKS+L+N + G R + SG T DS+ Sbjct: 174 E------------------EKIMMSIIGRPNVGKSSLLNSICGEKRAIVSDISGTTTDSI 215 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 ++ +I DTAG+R+ + E + ++ +S+ + ++++DA Q Sbjct: 216 DTLIKKGDNHWKIIDTAGIRRKKNVKYGTEFFGINRAFKSIDRSDVCVLVIDAIDGVTDQ 275 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D ++ + G A ++ +NKWD+V + + + + L + + IS TG+ Sbjct: 276 DQKLAGRIEEQGRACIIVVNKWDLVEKNSSTIYQVEKELRSKLYFLHWSKMIFISALTGQ 335 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKT-QLQNPPPTIFNRYNRLKYITQIQSSPP 421 +D++ L + R+TTS +N L+++ ++PP + RL Y TQ+++ PP Sbjct: 336 RVDNIFEHALNAVNQHRRRVTTSVVNEVLKESISWKSPPTKRSGKQGRLYYGTQVKNKPP 395 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +F +F P +Y+RY+ ++R+N G P+ + ++ + + K Sbjct: 396 TFTLFVNDPKLFGITYRRYIEKQIRVNLGFEGTPLILLWRGKQQRALNK 444 >gi|299135837|ref|ZP_07029021.1| ribosome-associated GTPase EngA [Acidobacterium sp. MP5ACTX8] gi|298601961|gb|EFI58115.1| ribosome-associated GTPase EngA [Acidobacterium sp. MP5ACTX8] Length = 631 Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 140/487 (28%), Positives = 237/487 (48%), Gaps = 41/487 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI G PNVGKSTLFNRL + + ++VG+ PGITRDR+YG+ G +VDT G+ Sbjct: 137 VAICGRPNVGKSTLFNRLTQTRRSIVGDEPGITRDRIYGEVEWAGRDVRLVDTGGVIPDD 196 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I ++ Q ++ + EA +I+ ++D + + D + L + PI + NKMDT Sbjct: 197 EALIPAEIFRQAKVGLEEADVIIMVVDGRTELAAPDIELARLLLRGGKPIFLAVNKMDTP 256 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKY----------------- 167 + L F+ ++ ISAEH G +L ++ ++ Sbjct: 257 ELEAGAENFRRLGFRNVLPISAEHAAGIGDLLDEVWAALPPEFVAEEPEEAMEGFEEEFE 316 Query: 168 -----PNHPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINR 222 PL ++ E P + S G ++IS+ +IA++GRPNVGKSTL+N Sbjct: 317 EDMDGGGDPLPGAQDAPDEESKPGRRLRSHG----EHISRETKIAIIGRPNVGKSTLLNA 372 Query: 223 LLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQS 282 L G +R + +G TRD+V + H DTAG+R+ + E+ +V S + Sbjct: 373 LTGSDRAIVSPIAGTTRDAVDEVVTREGHDFRFIDTAGIRRKGKTKLLAEKLSVIMSRKH 432 Query: 283 VRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVS----DKLNLLQDLR 338 + + ++++DA D I +G +V++ +NKWD+++ D LL D + Sbjct: 433 LEAADVALLVIDAAEGVAAADANIGGYAHESGRSVIIIVNKWDLMTEVGPDGKRLL-DGK 491 Query: 339 TKAIKNL--PQIGDI--YINT-----ISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNS 389 A + + Q+ D Y++ +S +G++ + V + + + R++T +N Sbjct: 492 PPADQKVYEQQVRDSLKYLDYAPLLFVSASESQGIEQVFKKVELVARERRKRVSTGSMNR 551 Query: 390 WLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINF 449 +L K Q + R R+ Y+TQ +PP+F++F K+ SY+R+L N +R F Sbjct: 552 FLDKIDFQRASVPMAKRV-RIYYMTQAAVAPPTFVLFTDRDVKLHFSYERFLANEIRDTF 610 Query: 450 SLSGIPI 456 G PI Sbjct: 611 KFIGSPI 617 >gi|299473466|emb|CBN77863.1| PEngA, plastid EngA GTPase [Ectocarpus siliculosus] Length = 680 Score = 213 bits (542), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 137/469 (29%), Positives = 228/469 (48%), Gaps = 37/469 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVK--KKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA- 61 +A++G PNVGKST+ NRL K K ++V + G+TRDR Y +A G F++VDT G+ Sbjct: 222 VAVIGRPNVGKSTVVNRLAKRFKDGSIVFDESGVTRDRTYKRAWYCGKDFDVVDTGGLVF 281 Query: 62 DGKNCSI-AKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 D K + AK++ Q +A+ EA ++ ++D G D I FLR++ +P+++ NK Sbjct: 282 DDKGGDVFAKEIRQQALIALEEATAVIMVVDGIVGCNVLDQEIARFLRQQKVPVVLAVNK 341 Query: 121 MDT-RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNK 179 ++ + + E + L E IS H G ++ + H E+ EN + Sbjct: 342 CESQKYGEIQTAEFWCLGLGEPWPISGLHGDGIYDMMDNV--------AEHLYEVDENAE 393 Query: 180 RNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITR 239 ++NI +A+VGRPNVGKS+L+NRL G R + G TR Sbjct: 394 E-----EDNIN---------------VAIVGRPNVGKSSLLNRLFGETRSIVSDVPGTTR 433 Query: 240 DSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPF 299 DS+ + + DTAG+R+ ++ E V ++ +++R + ++++D Sbjct: 434 DSIDAMFERGGRTYRLVDTAGIRRKGKVDYGNEFFMVNRAFKAIRRADVVLLMVDVEAGI 493 Query: 300 EKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTK-AIKNLPQIGDIYINTISG 358 QD + D + + G A V+ NKWD+V DK + + + A + L + + S Sbjct: 494 TDQDRVLADRIQSDGRACVVVCNKWDLVEDKDDSSYNKAVEYARQMLSPVKWAEVCFTSA 553 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFN---RYNRLKYITQ 415 +TG+ L V E+ + R+ TS LN L+ L PP+ + ++ Y Q Sbjct: 554 KTGQRCTKLFDLVDEVAVQHRRRVKTSVLNEVLRDAVLWQAPPSKKSSGASQGKIYYCNQ 613 Query: 416 IQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 I + PP+ +FC P ++YKRYL + R L PIR ++ + Sbjct: 614 IATRPPTVAVFCNNPKLFGDNYKRYLDRKFREQLGLKSTPIRFLWRGKR 662 >gi|148270478|ref|YP_001244938.1| GTP-binding protein EngA [Thermotoga petrophila RKU-1] gi|166225931|sp|A5IMD9|DER_THEP1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|147736022|gb|ABQ47362.1| small GTP-binding protein [Thermotoga petrophila RKU-1] Length = 439 Score = 213 bits (542), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 154/467 (32%), Positives = 235/467 (50%), Gaps = 36/467 (7%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+ IVG PNVGKSTLFN+LV+KK A+V + G+TRD + G F +VDT G+ D Sbjct: 3 TVLIVGKPNVGKSTLFNKLVRKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDN 62 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 I+++M + T I EA L+LF++D K GIT D ++ FLRK N+ I+V+NK + Sbjct: 63 PQDIISQKMKEVTLNMIREADLVLFVVDGKKGITKEDESLADFLRKSNVDTILVANKTEN 122 Query: 124 -RIAQRNFY-EIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 R +R E+Y L F E + +SAEH++ L I + ++K L++ Sbjct: 123 LREFEREVKPELYGLGFGEPIPVSAEHNVNLDVLVETIIRKLEEK----GLDL------- 171 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 E P+ I+ +++A+VGRPNVGKSTL N +L R L G TRD Sbjct: 172 ESKPE-------------ITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDP 218 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRIT-ESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 V DTAG+R+ SR+ ++E+ + + + S+ + +++LDAT Sbjct: 219 VDEEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGIT 278 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIY-INTISGR 359 +QD RI V G A V+ NKWD+V + + TK + D + IS Sbjct: 279 RQDQRIAGLVERRGRASVVVFNKWDLVEHREKRYDEF-TKLFREKFYFVDYSPLIFISAD 337 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKT-QLQNPPPTIFNRYNRLKYITQIQS 418 G +D ++ ++ + T++ +S +NS LQK N P R ++ + Q+ Sbjct: 338 KGWNIDKVIDAINLAYASYTTKVPSSAINSALQKVLAFTNLP-----RGLKIFFGLQVDI 392 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLR-INFSLSGIPIRMCFQSSK 464 PP+FL F KI K +L +R F G PI + F+ S+ Sbjct: 393 KPPTFLFFVNSIEKIKNPQKVFLRKLIRDYVFPFEGSPIFLKFKRSR 439 >gi|15644195|ref|NP_229245.1| GTP-binding protein EngA [Thermotoga maritima MSB8] gi|8134441|sp|Q9X1F8|DER_THEMA RecName: Full=GTPase Der; Short=TmDer; AltName: Full=GTP-binding protein EngA gi|4982010|gb|AAD36514.1|AE001796_6 conserved hypothetical protein [Thermotoga maritima MSB8] Length = 439 Score = 213 bits (542), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 153/466 (32%), Positives = 233/466 (50%), Gaps = 34/466 (7%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+ IVG PNVGKSTLFN+LVKKK A+V + G+TRD + G F +VDT G+ D Sbjct: 3 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDN 62 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 I+++M + T I EA L+LF++D K GIT D ++ FLRK + I+V+NK + Sbjct: 63 PQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAEN 122 Query: 124 -RIAQRNFY-EIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 R +R E+YSL F E + +SAEH++ L I K ++K L++ Sbjct: 123 LREFEREVKPELYSLGFGEPIPVSAEHNINLDTLLETIIKKLEEK----GLDL------- 171 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 E P+ I+ +++A+VGRPNVGKSTL N +L R L G TRD Sbjct: 172 ESKPE-------------ITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDP 218 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRIT-ESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 V DTAG+R+ SR+ ++E+ + + + S+ + +++LDAT Sbjct: 219 VDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGIT 278 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 +QD RI V G A V+ NKWD+V + + + L I + S Sbjct: 279 RQDQRIAGLVERRGRASVVVFNKWDLVEHREKRYDEFTKLFREKLYFIDYSPLIFTSADK 338 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKT-QLQNPPPTIFNRYNRLKYITQIQSS 419 G +D ++ ++ + T++ +S +NS LQK N P R ++ + Q+ Sbjct: 339 GWNIDRVIDAINLAYASYTTKVPSSAINSALQKVLAFTNLP-----RGLKIFFGLQVDIK 393 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLR-INFSLSGIPIRMCFQSSK 464 PP+FL F K+ K +L +R F G PI + F+ S+ Sbjct: 394 PPTFLFFVNSIEKVKNPQKIFLRKLIRDYVFPFEGSPIFLKFKRSR 439 >gi|170076756|ref|YP_001733394.1| GTP-binding protein EngA [Synechococcus sp. PCC 7002] gi|238692797|sp|B1XLH8|DER_SYNP2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|169884425|gb|ACA98138.1| GTPase of unknown function [Synechococcus sp. PCC 7002] Length = 453 Score = 213 bits (541), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 129/462 (27%), Positives = 229/462 (49%), Gaps = 31/462 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA++G PNVGKSTL NR+ + A+V + PGITRDR Y F IVDT GI Sbjct: 6 IAVIGRPNVGKSTLVNRIAGDQQAIVHDQPGITRDRTYRPGFWQDRNFQIVDTGGIVFDD 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 + + +Q +A+ EA + LF++D +AG+ D I +LR++N+P+++ NK ++ Sbjct: 66 HEEFLPLIREQAAIALAEAAVALFVVDGQAGLNAADQEIADWLRQQNVPVVLAVNKCESL 125 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 E + L +E ISA H GT +L + + Sbjct: 126 EQGYTQAAEFWELGMEEPFPISAIHGSGTGDLLDKVIEYLP------------------- 166 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 IT + + N +A++GRPNVGKS+L+N L G R + SG TRD++ Sbjct: 167 ----TITDVEEDTTIN------VAIIGRPNVGKSSLLNALTGEQRAIVSPISGTTRDAID 216 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + DTAG+R+ + E ++ ++ +++R + + ++D +QD Sbjct: 217 TIIERNGQQYRLIDTAGIRRKKNVDYGAEFFSINRAFKAIRRADVVLFVIDVLDGVTEQD 276 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 L++ + + G AV++ NKWD V + R + L + + IS +TG+ Sbjct: 277 LKLAGRIIDEGRAVIIVANKWDAVEKDTYTINQYRKELQARLFFMEWAEMLFISAQTGQR 336 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKT-QLQNPPPTIFNRYNRLKYITQIQSSPPS 422 ++ ++ V + + + R++T+ +N +Q+ +PP + + R+ Y TQ++S PP+ Sbjct: 337 VNKILDLVDQAAESHRRRVSTAVINEVIQEAVSWHSPPTSRQGKQGRIYYGTQVRSQPPT 396 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 +F P + +SY+RY+ + R + +G PIR+ ++ + Sbjct: 397 ISLFVNDPKRFNDSYRRYIEKQFRQDLGFAGTPIRLVWRGKR 438 >gi|169629458|ref|YP_001703107.1| GTP-binding protein EngA [Mycobacterium abscessus ATCC 19977] gi|169241425|emb|CAM62453.1| Probable GTP-binding protein EngA [Mycobacterium abscessus] Length = 466 Score = 213 bits (541), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 142/451 (31%), Positives = 222/451 (49%), Gaps = 34/451 (7%) Query: 9 GAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNCSI 68 G PNVGKSTL NR++ ++ AVV + PG+TRDR+ A F + DT G + + Sbjct: 37 GRPNVGKSTLVNRIIGRREAVVQDIPGVTRDRVSYPAEWLDRRFTVQDTGGW-EADATGL 95 Query: 69 AKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQR 128 + + +Q A+ A LI+ ++D+ G T D LR+ P+ + +NK+D+ A+ Sbjct: 96 QQLVAEQARHAMATADLIILVVDATVGATSTDEEAAKLLRRSGKPVFLAANKVDSDRAEA 155 Query: 129 NFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEESPKEN 188 + ++SL E + ISA H G ++L + + Sbjct: 156 DAAVLWSLGLGEPMPISAMHGRGVADLLDRVVADLPE----------------------- 192 Query: 189 ITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNW 248 I++ G P R+A+VG+PNVGKS+L+NRL G R + +G T D V Sbjct: 193 ISARGSGE----GGPRRVALVGKPNVGKSSLLNRLSGDQRAVVHDTAGTTVDPVDTLIEL 248 Query: 249 KNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVD 308 DTAG+R+ E ++ ++ E IVLLDA+ P +QD R++ Sbjct: 249 GGKTWRFVDTAGLRRKVGQASGHEYYASLRTHGAIEAAEVAIVLLDASQPITEQDQRVLS 308 Query: 309 SVFNTGHAVVLALNKWDMV-SDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDL 367 V +G A+VLA NKWD+V D+ +LL+ + L + I+ SGR + L Sbjct: 309 MVIESGRALVLAFNKWDLVDEDRRDLLEREVDLQLAQLNWAQRVNISAKSGRAVQKLVPA 368 Query: 368 MVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFLIFC 427 + S L+ W RI+T LN+W+++ PPP + R+ + TQ S PP+F++F Sbjct: 369 LESALDS---WDKRISTGQLNTWVKEVVAATPPPVRGGKQPRVLFATQATSRPPTFVLFT 425 Query: 428 TFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 T + Y+R+L RLR +F G PIR+ Sbjct: 426 T--GFLEAGYRRFLERRLRESFGFDGTPIRI 454 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 61/120 (50%), Gaps = 2/120 (1%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD-- 62 +A+VG PNVGKS+L NRL + AVV + G T D + + G + VDTAG+ Sbjct: 206 VALVGKPNVGKSSLLNRLSGDQRAVVHDTAGTTVDPVDTLIELGGKTWRFVDTAGLRRKV 265 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 G+ + +T AI A + + L+D+ IT D + S + + +++ NK D Sbjct: 266 GQASGHEYYASLRTHGAIEAAEVAIVLLDASQPITEQDQRVLSMVIESGRALVLAFNKWD 325 >gi|281412785|ref|YP_003346864.1| ribosome-associated GTPase EngA [Thermotoga naphthophila RKU-10] gi|281373888|gb|ADA67450.1| ribosome-associated GTPase EngA [Thermotoga naphthophila RKU-10] Length = 439 Score = 213 bits (541), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 154/466 (33%), Positives = 234/466 (50%), Gaps = 34/466 (7%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+ IVG PNVGKSTLFN+LV+KK A+V + G+TRD + G F +VDT G+ D Sbjct: 3 TVLIVGKPNVGKSTLFNKLVRKKKAIVEDEEGVTRDPVQDIVEWYGKTFKLVDTCGVFDN 62 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 I+++M + T I EA L+LF++D K GIT D ++ FLRK N+ I+V+NK + Sbjct: 63 PQDIISQKMKEITLNMIREADLVLFVVDGKRGITKEDESLADFLRKSNVDTILVANKAEN 122 Query: 124 -RIAQRNFY-EIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 R +R E+YSL F E + +SAEH++ L I K ++K L++ Sbjct: 123 LREFEREVKPELYSLGFGEPIPVSAEHNINLDTLLETIIKKLEEK----GLDL------- 171 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 E P+ I+ +++A+VGRPNVGKSTL N +L R L G TRD Sbjct: 172 ESKPE-------------ITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDP 218 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRIT-ESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 V DTAG+R+ SR+ ++E+ + + + S+ + +++LDAT Sbjct: 219 VDEEVFIDGKKYVFVDTAGLRRRSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGIT 278 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 +QD RI V G A V+ NKWD+V + + + L I + S Sbjct: 279 RQDQRIAGLVERRGRASVVVFNKWDLVEHREKRYDEFTKLFREKLYFIDYSPLIFTSADK 338 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKT-QLQNPPPTIFNRYNRLKYITQIQSS 419 G +D ++ ++ + T++ +S +NS LQK N P R ++ + Q+ Sbjct: 339 GWNVDRVIDAINLAYASYTTKVPSSAINSALQKVLAFTNLP-----RGLKIFFGLQVDIK 393 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLR-INFSLSGIPIRMCFQSSK 464 PP+FL F KI K +L +R F G PI + F+ S+ Sbjct: 394 PPTFLFFVNSIEKIKNPQKVFLRKLIRDYVFPFEGSPIFLKFKRSR 439 >gi|91203327|emb|CAJ72966.1| similar to GTP-binding protein [Candidatus Kuenenia stuttgartiensis] Length = 446 Score = 213 bits (541), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 133/455 (29%), Positives = 234/455 (51%), Gaps = 28/455 (6%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PNVGKS LFN ++++++V G+TRDR+ + +F +VDT G+ + Sbjct: 8 IVGRPNVGKSALFNCFSRRRISIVEPTSGVTRDRVSTEIRHKDCVFELVDTGGMGITDSD 67 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 + + + Q E+A+ A ++LF++D + G+TP D + LR +I+++NK+DT Sbjct: 68 GLTEDIEMQIEVALAAADVVLFVVDVREGVTPLDRIVAERLRHVKKEVILIANKVDTPKF 127 Query: 127 QRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEESPK 186 + + E L F E +SA G S+L I +F PL + P Sbjct: 128 EHSMGEFNELGFGEPHPVSAIEGYGRSDLLDKIISLF-------PL----------QEPY 170 Query: 187 ENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISW 246 +N S +++A+VG+ N GKSTLIN L R++ G TRDS+ + + Sbjct: 171 DNTDS---------VPIMKMAIVGKRNAGKSTLINTLARKQRVIVSEVPGTTRDSIDVKF 221 Query: 247 NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRI 306 N DTAG+RK S++ +S+E ++ ++ +S+R + + L+DAT+ D ++ Sbjct: 222 EMDNKQFLAIDTAGVRKKSQVKDSIEFYSMARAERSIRRADVVLFLIDATLKISDVDKKL 281 Query: 307 VDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDD 366 + V+ +NKWD+V K ++ K+LP + + I+ IS + + + + Sbjct: 282 GAYIDLERKPCVIVINKWDLV--KGIETEEYHEYINKSLPGLSFVPISFISAKNNDHVAE 339 Query: 367 LMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFLIF 426 ++ +++ + TR++TS LN ++ P ++ R+ Y TQI +PP+F+IF Sbjct: 340 MIHLAMDLYEQANTRVSTSELNKVVEDALKLQRPGQRKSKTPRIYYCTQISVAPPTFVIF 399 Query: 427 CTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 P +Y+RYL N+LR + IP++ F+ Sbjct: 400 VNDPTLFDNNYERYLGNQLRRKLAFPEIPLKFYFR 434 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 64/216 (29%), Positives = 104/216 (48%), Gaps = 11/216 (5%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 I +AIVG N GKSTL N L +K+ +V PG TRD + + ++ F +DTAG+ Sbjct: 178 IMKMAIVGKRNAGKSTLINTLARKQRVIVSEVPGTTRDSIDVKFEMDNKQFLAIDTAGVR 237 Query: 62 DGKNC--SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 SI + E +I A ++LFLID+ I+ D + +++ + P +IV N Sbjct: 238 KKSQVKDSIEFYSMARAERSIRRADVVLFLIDATLKISDVDKKLGAYIDLERKPCVIVIN 297 Query: 120 KMD--TRIAQRNFYE-----IYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPL 172 K D I ++E + L F I ISA+++ +E+ + +++Q N + Sbjct: 298 KWDLVKGIETEEYHEYINKSLPGLSFVPISFISAKNNDHVAEMIHLAMDLYEQA--NTRV 355 Query: 173 EMIENNKRNEESPKENITSEGKSSVKNISKPLRIAV 208 E NK E++ K + KS I +I+V Sbjct: 356 STSELNKVVEDALKLQRPGQRKSKTPRIYYCTQISV 391 >gi|237752638|ref|ZP_04583118.1| GTP-binding protein engA [Helicobacter winghamensis ATCC BAA-430] gi|229376127|gb|EEO26218.1| GTP-binding protein engA [Helicobacter winghamensis ATCC BAA-430] Length = 462 Score = 213 bits (541), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 142/453 (31%), Positives = 235/453 (51%), Gaps = 19/453 (4%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 +IAIVG PN GKS+LFNR K+++A+ G TRD + ++ + F + DT G+ D Sbjct: 7 SIAIVGRPNAGKSSLFNRFCKQRIAITSEIAGTTRDVKKARILLQDLPFLLFDTGGLDD- 65 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 ++ + ++ ++ A LIL+L+D K D I L KKN I +V NK+D Sbjct: 66 -KDALFQSVSKHSQRTGESADLILYLVDGKTPPEQADKEIFYSLEKKNPNIFLVINKIDN 124 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 ++N +E K + IS H+ G EL I K K N +E + + N+E Sbjct: 125 DKEKQNAWEFMEFGAKNVFYISVAHNRGILELEKAIVKALK----NETMESLIKAEFNDE 180 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 S ++ + +E + K I++ + I ++GR NVGKS+L+N LL R + + +G T D V Sbjct: 181 SLEDFLENE---TEKTINELINIGIIGRVNVGKSSLLNALLKEERSVVSNVAGTTIDPVD 237 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + DTAG+R+ +I E LE+ + ++ + + I++LDA++PF + D Sbjct: 238 EIGEINGRRVNFVDTAGIRRRGKI-EGLEKFALNRTRTILERTDIAILVLDASVPFVELD 296 Query: 304 LRIVDSVFNTGHAVVLALNKWDMV-SDKLNLLQD--LRTKAIKNLPQIGDIYINTISGRT 360 +I + V++ NKWD+ D +++D LR K ++ P I TIS + Sbjct: 297 EKIAGLIDEFKLGVIVVFNKWDIAHKDFKGIMEDFKLRFKFLEYAP------ILTISAKN 350 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G + L +L + + RI T+ LN+ +++ +++P P+ + ++ Y TQ +S P Sbjct: 351 GRHIQKLEEEILRVYANFSFRIPTAKLNATIKEATMRHPLPSDHGKIVKIYYATQFESKP 410 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSG 453 P + PN + SYKRYL+N LR F SG Sbjct: 411 PQIALIMNRPNSLHFSYKRYLVNFLRERFDFSG 443 >gi|254526548|ref|ZP_05138600.1| small GTP-binding protein domain [Prochlorococcus marinus str. MIT 9202] gi|221537972|gb|EEE40425.1| small GTP-binding protein domain [Prochlorococcus marinus str. MIT 9202] Length = 457 Score = 213 bits (541), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 134/469 (28%), Positives = 232/469 (49%), Gaps = 31/469 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAI+G PNVGKSTL NRL + A+V + PG+TRDR Y A G F IVDT G+ Sbjct: 5 TIAIIGRPNVGKSTLVNRLCQSNDAIVFDKPGVTRDRTYQNASWGGKEFQIVDTGGLVFD 64 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD- 122 + ++ Q LA+ EA L L ++D G+T D +I +LR + I+ NK + Sbjct: 65 DDSEFLPEIRTQVFLALEEASLALLVVDGNQGVTDGDLSIAKWLRNSSCKTIVAVNKCES 124 Query: 123 TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 T + E + L E +SA H GT +L ++ E+ ENN +++ Sbjct: 125 TTLGISLASEFWKLGLGEPNPVSAIHGSGTGDLLDLVIG-----------ELPENNIQDD 173 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 E + + ++++GRPNVGKS+L+N + G R + SG T DS+ Sbjct: 174 E------------------EKIMMSIIGRPNVGKSSLLNSICGEKRAIVSDISGTTTDSI 215 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 ++ +I DTAG+R+ + E + ++ +S+ + ++++DA Q Sbjct: 216 DTLIKKGDNYWKIIDTAGIRRKKNVKYGTEFFGINRAFKSIDRSDVCVLVIDAVDGVTDQ 275 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D ++ + G A ++ +NKWD+V + + + + L + + IS TG+ Sbjct: 276 DQKLAGRIEEQGRACIIVVNKWDLVEKNSSTIYQVEKELRSKLYFLHWSKMIFISALTGQ 335 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKT-QLQNPPPTIFNRYNRLKYITQIQSSPP 421 +D++ L + R+TTS +N L+++ ++PP + RL Y TQ+++ PP Sbjct: 336 RVDNIFEHALNAVNQHRRRVTTSVVNEVLKESISWKSPPTKRSGKQGRLYYGTQVKNKPP 395 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +F +F P +Y+RY+ ++R+N G P+ + ++ + + K Sbjct: 396 TFTLFVNDPKLFGITYRRYIEKQIRLNLGFEGTPLILLWRGKQQRALNK 444 >gi|91070353|gb|ABE11270.1| GTP-binding protein [uncultured Prochlorococcus marinus clone HF10-88F10] Length = 457 Score = 212 bits (540), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 134/469 (28%), Positives = 232/469 (49%), Gaps = 31/469 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAI+G PNVGKSTL NRL + A+V + PG+TRDR Y A G F IVDT G+ Sbjct: 5 TIAIIGRPNVGKSTLVNRLCQSNDAIVFDKPGVTRDRTYQNASWGGKEFQIVDTGGLVFD 64 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD- 122 + ++ Q LA+ EA L L ++D G+T D +I +LR + I+ NK + Sbjct: 65 DDSEFLPEIRTQVFLALEEASLALLVVDGNQGVTDGDLSIAKWLRNSSCKTIVAVNKCES 124 Query: 123 TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 T + E + L E +SA H GT +L ++ E+ ENN +++ Sbjct: 125 TNLGISLASEFWKLGLGEPNPVSAIHGSGTGDLLDLVIG-----------ELPENNIQDD 173 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 E + + ++++GRPNVGKS+L+N + G R + SG T DS+ Sbjct: 174 E------------------EKIMMSIIGRPNVGKSSLLNSICGEKRAIVSDISGTTTDSI 215 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 ++ +I DTAG+R+ + E + ++ +S+ + ++++DA Q Sbjct: 216 DTLIKKGDNYWKIIDTAGIRRKKNVKYGTEFFGINRAFKSIDRSDVCVLVIDAIDGVTDQ 275 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D ++ + G A ++ +NKWD+V + + + + L + + IS TG+ Sbjct: 276 DQKLAGRIEEQGRACIIVVNKWDIVEKNSSTIYQVEKELRSKLYFLHWSKMIFISALTGQ 335 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKT-QLQNPPPTIFNRYNRLKYITQIQSSPP 421 +D++ L + R+TTS +N L+++ ++PP + RL Y TQ+++ PP Sbjct: 336 RVDNIFEHALNAVNQHRRRVTTSVVNEVLKESISWKSPPTKRSGKQGRLYYGTQVKNRPP 395 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +F +F P +Y+RY+ ++R+N G P+ + ++ + + K Sbjct: 396 TFTLFVNDPKLFGITYRRYIEKQIRVNLGFEGTPLILLWRGKQQRALNK 444 >gi|118462577|ref|YP_882247.1| GTP-binding protein EngA [Mycobacterium avium 104] gi|254775515|ref|ZP_05217031.1| GTP-binding protein EngA [Mycobacterium avium subsp. avium ATCC 25291] gi|166225825|sp|A0QH59|DER_MYCA1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|118163864|gb|ABK64761.1| GTP-binding protein EngA [Mycobacterium avium 104] Length = 466 Score = 212 bits (540), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 142/455 (31%), Positives = 225/455 (49%), Gaps = 42/455 (9%) Query: 9 GAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA-DGKNCS 67 G PNVGKSTL NR++ ++ AVV + PG+TRDR+ A+ G F + DT G D K Sbjct: 36 GRPNVGKSTLVNRILGRREAVVQDVPGVTRDRVSYDALWTGRRFVVQDTGGWEPDAKG-- 93 Query: 68 IAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQ 127 + + + +Q +A+ A ++ ++D+ G T D A L + P+ + +NK+D+ A+ Sbjct: 94 LQQLVAEQASVAMRTADAVILVVDALVGATTADEAAARILLRSGKPVFLAANKVDSDKAE 153 Query: 128 RNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEESPKE 187 + ++SL E ISA H G ++L + + +E +P+ Sbjct: 154 ADAAMLWSLGLGEPHPISAMHGRGVADLLDEVLAALPEV--------------SEVAPRP 199 Query: 188 NITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWN 247 P R+A+VG+PNVGKS+L+N+L G R + +G T D V Sbjct: 200 G-------------GPRRVALVGKPNVGKSSLLNKLAGDQRSVVHDVAGTTVDPVDSLIE 246 Query: 248 WKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIV 307 + DTAG+R+ E ++ ++ E IVL+DA+ P +QD R++ Sbjct: 247 LGDRVWRFVDTAGLRRKVGQASGHEFYASVRTHSAIDAAEVVIVLIDASAPLTEQDQRVL 306 Query: 308 DSVFNTGHAVVLALNKWDMV-SDKLNLLQ---DLRTKAIKNLPQIGDIYINTISGRTGEG 363 V G A+VLA NKWD+V D+ LL+ D ++ P++ IS +TG Sbjct: 307 SMVIEAGRALVLAFNKWDLVDEDRRELLEREIDRELVQLRWAPRV------NISAKTGRA 360 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 + L+ ++ W TRI T LNSWL++ PPP + R+ + TQ + PP+F Sbjct: 361 VAKLVPAMETALASWDTRIATGPLNSWLKEVVAATPPPVRGGKQPRILFATQAAARPPTF 420 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 ++F T + Y+R+L RLR F G PIR+ Sbjct: 421 VLFTT--GFLEAGYRRFLERRLREAFGFEGTPIRI 453 >gi|78778772|ref|YP_396884.1| GTP-binding protein EngA [Prochlorococcus marinus str. MIT 9312] gi|123554591|sp|Q31CE7|DER_PROM9 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|78712271|gb|ABB49448.1| Small GTP-binding protein domain [Prochlorococcus marinus str. MIT 9312] Length = 457 Score = 212 bits (540), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 135/469 (28%), Positives = 230/469 (49%), Gaps = 31/469 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAI+G PNVGKSTL NRL + A+V + PG+TRDR Y A G F IVDT G+ Sbjct: 5 TIAIIGRPNVGKSTLVNRLCQSNDAIVFDKPGVTRDRTYQNASWGGKEFQIVDTGGLVFD 64 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD- 122 + ++ Q LA+ EA L L ++D G+T D +I +LR + II NK + Sbjct: 65 DDSEFLPEIRAQVFLALEEASLALLVVDGNQGVTDGDLSIAKWLRNSSCKTIIAVNKCES 124 Query: 123 TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 T + E + L E +SA H GT +L ++ E+ ENN + E Sbjct: 125 TTLGISLASEFWKLGLGEPYPVSAIHGSGTGDLLDLVIG-----------ELPENNIQEE 173 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 E + + ++++GRPNVGKS+L+N + G R + SG T DS+ Sbjct: 174 E------------------EKIMMSIIGRPNVGKSSLLNSISGEKRAIVSDISGTTTDSI 215 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + +I DTAG+R+ + E + ++ +S+ + ++++DA Q Sbjct: 216 DTLIKKGDTQWKIVDTAGIRRKKNVKYGTEFFGINRAFKSIDRSDVCVLVIDAIDGVTDQ 275 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D ++ + G A ++ +NKWD+V + + + + L + + IS TG+ Sbjct: 276 DQKLAGRIEEQGRACIIVINKWDLVEKNSSTIYQVEKELRSKLYFLHWSKMIFISALTGQ 335 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKT-QLQNPPPTIFNRYNRLKYITQIQSSPP 421 +D++ L+ + R+ TS +N L+++ ++PP + RL Y TQ+++ PP Sbjct: 336 RVDNIFEHALKAVNQHRRRVATSVVNEVLKESISWKSPPTKRSGKQGRLYYGTQVKNKPP 395 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +F +F P +Y+RY+ ++R+N G P+ + ++ + + K Sbjct: 396 TFTLFVNDPKLFGITYRRYIEKQIRLNLGFEGTPLILLWRGKQQRALNK 444 >gi|307152641|ref|YP_003888025.1| ribosome-associated GTPase EngA [Cyanothece sp. PCC 7822] gi|306982869|gb|ADN14750.1| ribosome-associated GTPase EngA [Cyanothece sp. PCC 7822] Length = 452 Score = 212 bits (540), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 133/468 (28%), Positives = 230/468 (49%), Gaps = 47/468 (10%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKSTL NRL + A+V + PGITRDR Y A F +VDT G+ Sbjct: 6 VAIIGRPNVGKSTLVNRLAGDQQAIVHDEPGITRDRTYRPAFWQDRDFQVVDTGGLVFDD 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + +Q A+ EA+ +F++D ++G T D I +LR +++P+++ NK ++ Sbjct: 66 DTEFLPLIREQAMAALTEANAAIFVVDGQSGPTAGDQEIADWLRSQSVPVLLAVNKCESV 125 Query: 125 ----IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPL--EMIENN 178 I F+E L E ISA H GT +L Q PL E+ EN+ Sbjct: 126 EQGIIQASQFWE---LGLGEPYPISAIHGNGTGDL-------LDQLITYLPLSGEVPEND 175 Query: 179 KRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 + +++A+VGRPNVGKS+L+N G R + SG T Sbjct: 176 E------------------------IKVAIVGRPNVGKSSLLNAFTGQQRAIVSPISGTT 211 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RD++ + DTAG+R+ + E + ++ +++R + + ++DA Sbjct: 212 RDTIDTIIERNGQHYRLIDTAGIRRKKNVEYGAEFFGINRAFKAIRRSDVVLFVVDALDG 271 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMV---SDKLNLLQDLRTKAIKNLPQIGDIYINT 355 QDL++ + + G A +L +NKWD V S + Q + + + I+++ Sbjct: 272 ITDQDLKLAGRIIDEGRATILVVNKWDAVEKDSYTIYEYQKILGSRLYFMDWAEMIFVSA 331 Query: 356 ISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKT-QLQNPPPTIFNRYNRLKYIT 414 ++G+ E + DL+ E + + R++T+ +N +Q+ PP + + ++ Y T Sbjct: 332 LTGQRVEKILDLVDQAAESH---RRRVSTAVINEVIQEAVSWHTPPTSRQGKQGKIYYGT 388 Query: 415 QIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 Q++S PP+ +F P + E+Y+RY+ ++ R G PIR+ ++ Sbjct: 389 QVKSQPPTITLFVNDPQRFNENYRRYIEHQFRQQLGFKGTPIRLIWRG 436 >gi|123967979|ref|YP_001008837.1| GTP-binding protein EngA [Prochlorococcus marinus str. AS9601] gi|166225839|sp|A2BPL9|DER_PROMS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|123198089|gb|ABM69730.1| GTP-binding protein (HSR1-related) [Prochlorococcus marinus str. AS9601] Length = 457 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 133/469 (28%), Positives = 231/469 (49%), Gaps = 31/469 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAI+G PNVGKSTL NRL + A+V + PG+TRDR Y A G F IVDT G+ Sbjct: 5 TIAIIGRPNVGKSTLVNRLCQSNDAIVFDKPGVTRDRTYQNASWGGKEFQIVDTGGLVFD 64 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD- 122 ++ Q LA+ EA L L ++D G+T D +I +LR + I+ NK + Sbjct: 65 DESEFLPEIRTQVFLALEEASLALLVVDGNQGVTDGDLSIAKWLRNSSCKTIVAVNKCES 124 Query: 123 TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 T + E + L E +SA H GT +L ++ E+ ENN +++ Sbjct: 125 TTLGISLASEFWKLGLGEPNPVSAIHGSGTGDLLDLVIG-----------ELPENNIQDD 173 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 E + + ++++GRPNVGKS+L+N + G R + SG T DS+ Sbjct: 174 E------------------EKIMMSIIGRPNVGKSSLLNSICGEKRAIVSDISGTTTDSI 215 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 ++ +I DTAG+R+ + E + ++ +S+ + ++++DA Q Sbjct: 216 DTLIKKGDNNWKIIDTAGIRRKKNVKYGTEFFGINRAFKSIDRSDVCVLVIDAVDGVTDQ 275 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D ++ + G A ++ +NKWD++ + + + + L + + IS TG+ Sbjct: 276 DQKLAGRIEEQGRACIIVVNKWDLIEKNSSTIYQVEKELRSKLYFLHWSKMIFISALTGQ 335 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKT-QLQNPPPTIFNRYNRLKYITQIQSSPP 421 +D++ L + R+TTS +N L+++ ++PP + RL Y TQ+++ PP Sbjct: 336 RVDNIFEHALNAVNQHRRRVTTSVVNEVLKESISWKSPPTKRSGKQGRLYYGTQVKNKPP 395 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +F +F P +Y+RY+ ++R+N G P+ + ++ + + K Sbjct: 396 TFTLFVNDPKLFGITYRRYIEKQIRVNLGFEGTPLILLWRGKQQRALNK 444 >gi|291456800|ref|ZP_06596190.1| ribosome-associated GTPase EngA [Bifidobacterium breve DSM 20213] gi|291382077|gb|EFE89595.1| ribosome-associated GTPase EngA [Bifidobacterium breve DSM 20213] Length = 708 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 134/462 (29%), Positives = 219/462 (47%), Gaps = 38/462 (8%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + +AIVG PNVGKS+L NR++ ++ AVV + PG+TRDR+ A G F +VDT G Sbjct: 272 VGVLAIVGRPNVGKSSLVNRILGRRAAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGW- 330 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 + I + Q ++A+ A ++F++D + G+T D I LR P+++ NK+ Sbjct: 331 EADVEGIESAIASQAQVAVTLADAVVFVVDGQVGMTTTDERIVKMLRASGKPVVLAVNKI 390 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D ++ E + L E ISA H G +L V K+ Sbjct: 391 DDNASEYLAAEFWKLGLGEPYSISAMHGRGVGDLLDVALGKLKE---------------- 434 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 +E S S R+A+VGRPNVGKS+L+N+L R + +G TRD Sbjct: 435 ---------AEKASGYLTPSGLRRVALVGRPNVGKSSLLNQLAHSERAVVNDLAGTTRDP 485 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 V + DTAG+++ E + ++ ++ E ++L DA+ P Sbjct: 486 VDEIVDIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALILFDASQPISD 545 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVSD----KLNLLQDLRTKAIKNLPQIGDIYINTIS 357 QDL+++ + + G A+VL NKWD + + +L L + + ++ +S Sbjct: 546 QDLKVMSTAVDAGRAIVLVFNKWDAMDEFDKQRLERLWNTEFDRVMWAERV------NLS 599 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 +TG + L ++ + W RI T LN++L + Q +P P + R+ + TQ Sbjct: 600 AKTGWHTNRLARAMNTALESWDQRIPTGKLNAFLGRIQAAHPHPLRGGKQPRILFATQAS 659 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 + PP F+IF T + Y+RY+ +LR F G PI++ Sbjct: 660 TRPPRFVIFAT--GFLEHGYRRYIERQLREEFGFEGTPIQIS 699 >gi|320536777|ref|ZP_08036777.1| ribosome-associated GTPase EngA [Treponema phagedenis F0421] gi|320146373|gb|EFW37989.1| ribosome-associated GTPase EngA [Treponema phagedenis F0421] Length = 473 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 139/468 (29%), Positives = 232/468 (49%), Gaps = 32/468 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 I IVG PNVGKSTLFNR ++K+ A+ + G+TRD + QAI+NG+ ++DT G + Sbjct: 28 IVIVGRPNVGKSTLFNRFLRKRRAITDSVQGVTRDPIEEQAIVNGLPVRLMDTGGFKLTR 87 Query: 65 NCSIAKQMND-----QTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 + + + D +T A+ A IL L+D+ + P D FLR +I N Sbjct: 88 SGLQDEDVMDSLVVEKTIEALERADRILLLLDAGHAL-PEDEEFIQFLRPYWSKLIAAVN 146 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNK 179 K + + Y + F+ +V ISAEH SEL ++ E ++ + Sbjct: 147 KTEGGRLEAEAYNYFKYGFEHLVFISAEHGDNISELGELM------------TEGLDFSD 194 Query: 180 RNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITR 239 E + KEN +R+A++G+PN GKSTL N L + + +G TR Sbjct: 195 VREAAAKENT--------------IRLALLGKPNTGKSTLANYLTKSSASIVSDIAGTTR 240 Query: 240 DSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPF 299 D V ++++K + DTAG+RK +++T +E +V ++++S+ + + L+DA Sbjct: 241 DVVHGNFSYKGMHFVLADTAGIRKKNKVTAGIEYYSVLRAIKSLDSTDIVFYLIDAQEGL 300 Query: 300 EKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGR 359 +QD +I+ G ++ LNKWDM++ Q+ + ++ + + I + Sbjct: 301 SEQDKKIIVQASKRGLGIIFLLNKWDMMAQDPKTFQEAERQIKIMFAKMEYVPVLPICAQ 360 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 TG+G+ + + L+I T+I TS LN L+ PPP LKY+ Q + Sbjct: 361 TGKGVKKALDTALKIFSQLNTKIETSALNLALKDWTTVYPPPAGKTDSFSLKYLVQTSTC 420 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 P FL+F P+ + E Y RYL NR+R++ IP+ + + S+ + Sbjct: 421 PVEFLVFANKPDAVTEGYIRYLQNRIRLDLGFDFIPVTVKVKGSRKRW 468 >gi|170289127|ref|YP_001739365.1| small GTP-binding protein [Thermotoga sp. RQ2] gi|238688753|sp|B1LBI4|DER_THESQ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|170176630|gb|ACB09682.1| small GTP-binding protein [Thermotoga sp. RQ2] Length = 439 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 154/466 (33%), Positives = 234/466 (50%), Gaps = 34/466 (7%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+ IVG PNVGKSTLFN+LV+KK A+V + G+TRD + G F +VDT G+ D Sbjct: 3 TVLIVGKPNVGKSTLFNKLVRKKKAIVEDEEGVTRDPVQDIVEWYGKTFKLVDTCGVFDN 62 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 I+++M + T I EA L+LF++D K GIT D ++ FLRK N+ I+V+NK + Sbjct: 63 PQDIISQKMKEITLNMIREADLVLFVVDGKRGITKEDESLADFLRKSNVDTILVANKAEN 122 Query: 124 -RIAQRNFY-EIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 R +R E+YSL F E + +SAEH++ L I K ++K L++ Sbjct: 123 LREFEREVKPELYSLGFGEPIPVSAEHNINLDTLLETIIKKLEEK----GLDL------- 171 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 E P+ I+ +++A+VGRPNVGKSTL N +L R L G TRD Sbjct: 172 ESKPE-------------ITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDP 218 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRIT-ESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 V DTAG+R+ SR+ ++E+ + + + S+ + +++LDAT Sbjct: 219 VDEEVFIDGKKYVFVDTAGLRRRSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGIT 278 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 +QD RI V G A V+ NKWD+V + + + L I + S Sbjct: 279 RQDQRIAGLVERRGRASVVVFNKWDLVEHREKRHDEFTKLFREKLYFIDYSPLIFTSADK 338 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKT-QLQNPPPTIFNRYNRLKYITQIQSS 419 G +D ++ ++ + T++ +S +NS LQK N P R ++ + Q+ Sbjct: 339 GWNVDRVIDAINLAYASYTTKVPSSAINSALQKVLAFTNLP-----RGLKIFFGLQVDIK 393 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLR-INFSLSGIPIRMCFQSSK 464 PP+FL F KI K +L +R F G PI + F+ S+ Sbjct: 394 PPTFLFFVNSIEKIKNPQKVFLRKLIRDYVFPFEGSPIFLKFKRSR 439 >gi|226503143|ref|NP_001146320.1| hypothetical protein LOC100279896 [Zea mays] gi|219886617|gb|ACL53683.1| unknown [Zea mays] Length = 653 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 146/511 (28%), Positives = 260/511 (50%), Gaps = 77/511 (15%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 ++ +AI+G PNVGKS LFNRLV A+V + PG+TRDRLYG++ F ++DT G+ Sbjct: 151 LLPKVAIIGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRLYGRSYWGDHEFMVIDTGGV 210 Query: 61 ---------------------ADG-----KNCSIAK---QMNDQTELAINEAHLILFLID 91 DG + +IA+ + Q A++EA +ILF++D Sbjct: 211 ITLSKSQAGVMEELAVTTTVGMDGIPFATREAAIARMPSMIEKQAVAAVDEASVILFVVD 270 Query: 92 SKAGITPYDHAITSFLRK--KNIPIIIVSNKMDT-RIAQRNFYEIYSLDFKEIVEISAEH 148 +AG+ D I+ +LR+ + I++ NK ++ R Q + +SL F + ISA Sbjct: 271 GQAGLVAADIEISDWLRRNYSDKCILLAVNKCESPRKGQMQALDFWSLGFSPL-PISAIT 329 Query: 149 DLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAV 208 GT +L ++ ++ L+ +E K +K IA+ Sbjct: 330 GTGTGDLLDLVCSELRK---FEVLDAVEEEK---------------------NKVPAIAI 365 Query: 209 VGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKN-HPIEIFDTAGMRKPSRI 267 VGRPNVGKS+++N L+G +R + SG TRD++ + + ++ DTAG+R+ + + Sbjct: 366 VGRPNVGKSSILNALVGEDRTIVSPVSGTTRDAIDTEFTTADGEKYKLIDTAGIRRRTAV 425 Query: 268 ------TESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLAL 321 TESL +VK++ +++R + ++++A +QD +I + + G A V+ + Sbjct: 426 ISAGSTTESL---SVKRAFRAIRRSDVVALVIEAMACVTEQDYKIAERIEKEGKACVIVV 482 Query: 322 NKWDMVSDK-----LNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 NKWD + +K + QD+R K ++ L +Y + +G + ++ ++ + + K Sbjct: 483 NKWDTIPNKNHESTTHYEQDVREK-LRILDWAPIVYCSATNGTS---VEKIISAAALVEK 538 Query: 377 LWKTRITTSYLNSWLQKT-QLQNPPPTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPE 435 R++TS LN +++ ++PP T + R+ Y TQ PP+F++F P+ Sbjct: 539 ERSRRLSTSILNQVIREAIAFKSPPRTRGGKRGRVYYTTQAAVGPPTFVLFVNDAKLFPD 598 Query: 436 SYKRYLINRLRINFSLSGIPIRMCFQSSKNP 466 +Y+RY+ +LR + G PIR+ ++S + P Sbjct: 599 TYRRYMEKKLRSDAGFPGTPIRLLWRSRRRP 629 >gi|329946748|ref|ZP_08294160.1| ribosome biogenesis GTPase Der [Actinomyces sp. oral taxon 170 str. F0386] gi|328526559|gb|EGF53572.1| ribosome biogenesis GTPase Der [Actinomyces sp. oral taxon 170 str. F0386] Length = 719 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 142/461 (30%), Positives = 235/461 (50%), Gaps = 38/461 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI---A 61 +A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ A G F IVDT G Sbjct: 285 LAVVGRPNVGKSTLVNRVLGRREAVVQDTPGVTRDRVSYPAEWAGRRFTIVDTGGWEVDV 344 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 G + ++A Q E+A+ A +L ++D++ GIT D + LR+ P+++ +NK+ Sbjct: 345 AGLDAAVAT----QAEVAVEMADAVLLVVDAQVGITETDARVVRMLRRSGKPVVLAANKV 400 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D+ + + +++L E +SA H G+ E+ + ++ Sbjct: 401 DSPAQEGDAATLWNLGLGEPFPVSALHGRGSGEVLDAVMEVLP----------------- 443 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 E S EG R+A+VGRPNVGKS+L+N + G R++ +G TRD Sbjct: 444 EVSAVATAAPEGDLH--------RVALVGRPNVGKSSLLNSIAGRERVVVNETAGTTRDP 495 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 V DTAG+R+ + + + V ++ ++ E +VLLDA+ P + Sbjct: 496 VDEIIELDGRQWVFVDTAGIRRRVKQSRGADYYAVLRTQGAIDKAEVVVVLLDASEPISE 555 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIG-DIYINTISGRT 360 QD+R+V V + G A+VL NKWD+V ++ + L + +L + +IN ++ RT Sbjct: 556 QDVRVVQQVVDAGRALVLVNNKWDLVDEERQKM--LLWEVEHDLAHVSWAPHIN-LAART 612 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G + L+ + + W TR+ T LN +L + Q P P + R+ + TQ+Q +P Sbjct: 613 GWHTNRLVRAFDAALEGWTTRVPTGRLNGFLGQLQSATPHPVRGGKQPRILFATQVQVAP 672 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 P +IF T + Y+R++ RLR F +G PI++ + Sbjct: 673 PRIVIFTT--GFLDAGYRRFIERRLREEFGFTGTPIQIGVR 711 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 42/151 (27%), Positives = 74/151 (49%), Gaps = 12/151 (7%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 ++ +A+VG PNVGKS+L N + ++ VV G TRD + ++G + VDTAGI Sbjct: 457 LHRVALVGRPNVGKSSLLNSIAGRERVVVNETAGTTRDPVDEIIELDGRQWVFVDTAGIR 516 Query: 62 DGKNCSIAKQMND--QTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 S +T+ AI++A +++ L+D+ I+ D + + +++V+N Sbjct: 517 RRVKQSRGADYYAVLRTQGAIDKAEVVVVLLDASEPISEQDVRVVQQVVDAGRALVLVNN 576 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDL 150 K D +R ++ + EHDL Sbjct: 577 KWDLVDEERQKMLLWEV----------EHDL 597 >gi|118602671|ref|YP_903886.1| small GTP-binding protein [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567610|gb|ABL02415.1| small GTP-binding protein [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 465 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 142/466 (30%), Positives = 231/466 (49%), Gaps = 34/466 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIING---VIFNIVDTAGIA 61 I +VG PNVGKSTLFNRL + A+V + G+TRDR Y + +++ I+DT G+ Sbjct: 6 ICLVGRPNVGKSTLFNRLSHSRQALVSDFEGLTRDRQYAEVLLDNDTQTFATIIDTGGLT 65 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 + KN + + Q A+ E+ +I F++ S+ G+ D I S LRK II+V NK Sbjct: 66 N-KNNLVDSSIQGQVLNALEESDIIYFIVSSRDGVIGLDLEIVSRLRKLKKNIILVCNKA 124 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 + + E + L E + ISAEH G ++L + + + +E+ Sbjct: 125 EG-LNPALAAEFFELGLGEPMLISAEHGQGIADLIDTTLPLLPKVTIDEIVEV------- 176 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 E IT +AV+GRPNVGKSTLINR+LG R+L G T DS Sbjct: 177 -----EGIT---------------VAVLGRPNVGKSTLINRILGQERVLVMDFPGTTHDS 216 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 + I + + DTAG+R+ E +E ++ K++ ++ I++LDA + + Sbjct: 217 IYIPFEHEGQKYTFIDTAGIRRKRSTHEKVEIFSIIKAIDALERAHVVILVLDAQVGVIE 276 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTG 361 QD ++ + + G A+++ +NKWD + D Q+++ K L I ++ IS Sbjct: 277 QDATLLGMIIDKGKALLIVINKWDGLDDYQK--QEVKRKLEIKLSFINYASVHYISALHA 334 Query: 362 EGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 G+ L + + + + +TS LN L+K + PP + R ++KY+ Q PP Sbjct: 335 FGVGKLFTPINQSYQNAGEQHSTSVLNKILEKANQDHQPPPVKGRRLKIKYVNQTDVFPP 394 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 +F +P +Y+RYL N L+ PI++ ++SS NP+ Sbjct: 395 TFTFHGNHLQNVPNAYERYLKNFFINALQLTNTPIKIKYKSSDNPF 440 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 48/181 (26%), Positives = 91/181 (50%), Gaps = 19/181 (10%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+A++G PNVGKSTL NR++ ++ +V + PG T D +Y G + +DTAGI Sbjct: 180 TVAVLGRPNVGKSTLINRILGQERVLVMDFPGTTHDSIYIPFEHEGQKYTFIDTAGIRRK 239 Query: 64 KNC-------SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIII 116 ++ SI K ++ A+ AH+++ ++D++ G+ D + + K ++I Sbjct: 240 RSTHEKVEIFSIIKAID-----ALERAHVVILVLDAQVGVIEQDATLLGMIIDKGKALLI 294 Query: 117 VSNKMD-------TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPN 169 V NK D + ++ ++ +++ + ISA H G +L + I + ++ Sbjct: 295 VINKWDGLDDYQKQEVKRKLEIKLSFINYASVHYISALHAFGVGKLFTPINQSYQNAGEQ 354 Query: 170 H 170 H Sbjct: 355 H 355 >gi|215430606|ref|ZP_03428525.1| GTP-binding protein EngA [Mycobacterium tuberculosis EAS054] gi|219557637|ref|ZP_03536713.1| GTP-binding protein EngA [Mycobacterium tuberculosis T17] gi|289569764|ref|ZP_06449991.1| GTP-binding protein engA [Mycobacterium tuberculosis T17] gi|289753804|ref|ZP_06513182.1| GTP-binding protein EngA [Mycobacterium tuberculosis EAS054] gi|289543518|gb|EFD47166.1| GTP-binding protein engA [Mycobacterium tuberculosis T17] gi|289694391|gb|EFD61820.1| GTP-binding protein EngA [Mycobacterium tuberculosis EAS054] Length = 463 Score = 211 bits (538), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 142/455 (31%), Positives = 227/455 (49%), Gaps = 34/455 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ A+ G F + DT G + Sbjct: 29 VAVVGRPNVGKSTLVNRILGRREAVVQDIPGVTRDRVCYDALWTGRRFVVQDTGGW-EPN 87 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + + +Q +A+ A ++ ++D+ G T D A L + P+ + +NK+D+ Sbjct: 88 AKGLQRLVAEQASVAMRTADAVILVVDAGVGATAADEAAARILLRSGKPVFLAANKVDSE 147 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + ++SL E ISA H G ++L + + Sbjct: 148 KGESDAAALWSLGLGEPHAISAMHGRGVADLLDGVLAALPEV------------------ 189 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 E+ ++ G P R+A+VG+PNVGKS+L+N+L G R + +G T D V Sbjct: 190 -GESASASG--------GPRRVALVGKPNVGKSSLLNKLAGDQRSVVHEAAGTTVDPVDS 240 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 DTAG+R+ E ++ ++ + E IVL+DA+ P +QDL Sbjct: 241 LIELGGDVWRFVDTAGLRRKVGQASGHEFYASVRTHAAIDSAEVAIVLIDASQPLTEQDL 300 Query: 305 RIVDSVFNTGHAVVLALNKWDMV-SDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 R++ V G A+VLA NKWD+V D+ LLQ + + L Q+ IS +TG Sbjct: 301 RVISMVIEAGRALVLAYNKWDLVDEDRRELLQ---REIDRELVQVRWAQRVNISAKTGRA 357 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 + L+ ++ + W TRI T LN+WL + PPP + R+ + TQ + PP+F Sbjct: 358 VHKLVPAMEDALASWDTRIATGPLNTWLTEVTAATPPPVRGGKQPRILFATQATARPPTF 417 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 ++F T + Y+R+L RLR F G PIR+ Sbjct: 418 VLFTT--GFLEAGYRRFLERRLRETFGFDGSPIRV 450 >gi|41407513|ref|NP_960349.1| GTP-binding protein EngA [Mycobacterium avium subsp. paratuberculosis K-10] gi|81831811|sp|Q740D6|DER_MYCPA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|41395866|gb|AAS03732.1| hypothetical protein MAP_1415 [Mycobacterium avium subsp. paratuberculosis K-10] Length = 466 Score = 211 bits (538), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 142/452 (31%), Positives = 224/452 (49%), Gaps = 36/452 (7%) Query: 9 GAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA-DGKNCS 67 G PNVGKSTL NR++ ++ AVV + PG+TRDR+ A+ G F + DT G D K Sbjct: 36 GRPNVGKSTLVNRILGRREAVVQDVPGVTRDRVSYDALWTGRRFVVQDTGGWEPDAKG-- 93 Query: 68 IAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQ 127 + + + +Q +A+ A ++ ++D+ G T D A L + P+ + +NK+D+ A+ Sbjct: 94 LQQLVAEQASVAMRTADAVILVVDALVGATTADEAAARILLRSGKPVFLAANKVDSDKAE 153 Query: 128 RNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEESPKE 187 + ++SL E ISA H G ++L + + +E +P+ Sbjct: 154 ADAAMLWSLGLGEPHPISAMHGRGVADLLDEVLAALPEV--------------SEVAPRP 199 Query: 188 NITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWN 247 P R+A+VG+PNVGKS+L+N+L G R + +G T D V Sbjct: 200 G-------------GPRRVALVGKPNVGKSSLLNKLAGDQRSVVHDVAGTTVDPVDSLIE 246 Query: 248 WKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIV 307 + DTAG+R+ E ++ ++ E IVL+DA+ P +QD R++ Sbjct: 247 LGDRVWRFVDTAGLRRKVGQASGHEFYASVRTHSAIDAAEVVIVLIDASAPLTEQDQRVL 306 Query: 308 DSVFNTGHAVVLALNKWDMV-SDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDD 366 V G A+VLA NKWD+V D+ LL+ + + L Q+ IS +TG + Sbjct: 307 SMVIEAGRALVLAFNKWDLVDEDRRELLE---REIDRELVQLRWAQRVNISAKTGRAVAK 363 Query: 367 LMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFLIF 426 L+ ++ W TRI T LNSWL++ PPP + R+ + TQ + PP+F++F Sbjct: 364 LVPAMETALASWDTRIATGPLNSWLKEVVAATPPPVRGGKQPRILFATQAAARPPTFVLF 423 Query: 427 CTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 T + Y+R+L RLR F G PIR+ Sbjct: 424 TT--GFLEAGYRRFLERRLREAFGFEGTPIRI 453 >gi|15608851|ref|NP_216229.1| GTP-binding protein EngA [Mycobacterium tuberculosis H37Rv] gi|15841173|ref|NP_336210.1| GTP-binding protein EngA [Mycobacterium tuberculosis CDC1551] gi|31792900|ref|NP_855393.1| GTP-binding protein EngA [Mycobacterium bovis AF2122/97] gi|121637621|ref|YP_977844.1| GTP-binding protein EngA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148661511|ref|YP_001283034.1| GTP-binding protein EngA [Mycobacterium tuberculosis H37Ra] gi|148822919|ref|YP_001287673.1| GTP-binding protein EngA [Mycobacterium tuberculosis F11] gi|167967183|ref|ZP_02549460.1| GTP-binding protein EngA [Mycobacterium tuberculosis H37Ra] gi|215403983|ref|ZP_03416164.1| GTP-binding protein EngA [Mycobacterium tuberculosis 02_1987] gi|215411361|ref|ZP_03420169.1| GTP-binding protein EngA [Mycobacterium tuberculosis 94_M4241A] gi|215445899|ref|ZP_03432651.1| GTP-binding protein EngA [Mycobacterium tuberculosis T85] gi|218753421|ref|ZP_03532217.1| GTP-binding protein EngA [Mycobacterium tuberculosis GM 1503] gi|224990096|ref|YP_002644783.1| GTP-binding protein [Mycobacterium bovis BCG str. Tokyo 172] gi|253799248|ref|YP_003032249.1| GTP-binding protein engA [Mycobacterium tuberculosis KZN 1435] gi|254231909|ref|ZP_04925236.1| GTP-binding protein engA [Mycobacterium tuberculosis C] gi|254364552|ref|ZP_04980598.1| GTP-binding protein engA [Mycobacterium tuberculosis str. Haarlem] gi|254550724|ref|ZP_05141171.1| GTP-binding protein EngA [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260186666|ref|ZP_05764140.1| GTP-binding protein EngA [Mycobacterium tuberculosis CPHL_A] gi|260204983|ref|ZP_05772474.1| GTP-binding protein EngA [Mycobacterium tuberculosis K85] gi|289447328|ref|ZP_06437072.1| GTP-binding protein engA [Mycobacterium tuberculosis CPHL_A] gi|289554514|ref|ZP_06443724.1| GTP-binding protein engA [Mycobacterium tuberculosis KZN 605] gi|289574381|ref|ZP_06454608.1| GTP-binding protein engA [Mycobacterium tuberculosis K85] gi|289745849|ref|ZP_06505227.1| GTP-binding protein engA [Mycobacterium tuberculosis 02_1987] gi|289757822|ref|ZP_06517200.1| GTP-binding protein [Mycobacterium tuberculosis T85] gi|289761869|ref|ZP_06521247.1| GTP-binding protein engA [Mycobacterium tuberculosis GM 1503] gi|294993177|ref|ZP_06798868.1| GTP-binding protein EngA [Mycobacterium tuberculosis 210] gi|297634266|ref|ZP_06952046.1| GTP-binding protein EngA [Mycobacterium tuberculosis KZN 4207] gi|297731253|ref|ZP_06960371.1| GTP-binding protein EngA [Mycobacterium tuberculosis KZN R506] gi|298525211|ref|ZP_07012620.1| GTP-binding protein engA [Mycobacterium tuberculosis 94_M4241A] gi|306775899|ref|ZP_07414236.1| GTP-binding protein engA [Mycobacterium tuberculosis SUMu001] gi|306779717|ref|ZP_07418054.1| GTP-binding protein engA [Mycobacterium tuberculosis SUMu002] gi|306788817|ref|ZP_07427139.1| GTP-binding protein engA [Mycobacterium tuberculosis SUMu004] gi|306793153|ref|ZP_07431455.1| GTP-binding protein engA [Mycobacterium tuberculosis SUMu005] gi|306797532|ref|ZP_07435834.1| GTP-binding protein engA [Mycobacterium tuberculosis SUMu006] gi|306803413|ref|ZP_07440081.1| GTP-binding protein engA [Mycobacterium tuberculosis SUMu008] gi|306967812|ref|ZP_07480473.1| GTP-binding protein engA [Mycobacterium tuberculosis SUMu009] gi|306972008|ref|ZP_07484669.1| GTP-binding protein engA [Mycobacterium tuberculosis SUMu010] gi|307084298|ref|ZP_07493411.1| GTP-binding protein engA [Mycobacterium tuberculosis SUMu012] gi|313658585|ref|ZP_07815465.1| GTP-binding protein Der [Mycobacterium tuberculosis KZN V2475] gi|54037050|sp|P64058|DER_MYCBO RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|54040974|sp|P64057|DER_MYCTU RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|166225826|sp|A1KJD0|DER_MYCBP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|166225827|sp|A5U372|DER_MYCTA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|254783160|sp|C1ANY6|DER_MYCBT RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|2326756|emb|CAB10970.1| PROBABLE GTP-BINDING PROTEIN ENGA [Mycobacterium tuberculosis H37Rv] gi|13881394|gb|AAK46024.1| GTP-binding protein [Mycobacterium tuberculosis CDC1551] gi|31618491|emb|CAD94443.1| PROBABLE GTP-BINDING PROTEIN ENGA [Mycobacterium bovis AF2122/97] gi|121493268|emb|CAL71739.1| Probable GTP-binding protein engA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124600968|gb|EAY59978.1| GTP-binding protein engA [Mycobacterium tuberculosis C] gi|134150066|gb|EBA42111.1| GTP-binding protein engA [Mycobacterium tuberculosis str. Haarlem] gi|148505663|gb|ABQ73472.1| GTP-binding protein EngA [Mycobacterium tuberculosis H37Ra] gi|148721446|gb|ABR06071.1| GTP-binding protein engA [Mycobacterium tuberculosis F11] gi|224773209|dbj|BAH26015.1| GTP-binding protein [Mycobacterium bovis BCG str. Tokyo 172] gi|253320751|gb|ACT25354.1| GTP-binding protein engA [Mycobacterium tuberculosis KZN 1435] gi|289420286|gb|EFD17487.1| GTP-binding protein engA [Mycobacterium tuberculosis CPHL_A] gi|289439146|gb|EFD21639.1| GTP-binding protein engA [Mycobacterium tuberculosis KZN 605] gi|289538812|gb|EFD43390.1| GTP-binding protein engA [Mycobacterium tuberculosis K85] gi|289686377|gb|EFD53865.1| GTP-binding protein engA [Mycobacterium tuberculosis 02_1987] gi|289709375|gb|EFD73391.1| GTP-binding protein engA [Mycobacterium tuberculosis GM 1503] gi|289713386|gb|EFD77398.1| GTP-binding protein [Mycobacterium tuberculosis T85] gi|298495005|gb|EFI30299.1| GTP-binding protein engA [Mycobacterium tuberculosis 94_M4241A] gi|308215649|gb|EFO75048.1| GTP-binding protein engA [Mycobacterium tuberculosis SUMu001] gi|308327367|gb|EFP16218.1| GTP-binding protein engA [Mycobacterium tuberculosis SUMu002] gi|308334633|gb|EFP23484.1| GTP-binding protein engA [Mycobacterium tuberculosis SUMu004] gi|308338420|gb|EFP27271.1| GTP-binding protein engA [Mycobacterium tuberculosis SUMu005] gi|308342143|gb|EFP30994.1| GTP-binding protein engA [Mycobacterium tuberculosis SUMu006] gi|308349930|gb|EFP38781.1| GTP-binding protein engA [Mycobacterium tuberculosis SUMu008] gi|308354551|gb|EFP43402.1| GTP-binding protein engA [Mycobacterium tuberculosis SUMu009] gi|308358528|gb|EFP47379.1| GTP-binding protein engA [Mycobacterium tuberculosis SUMu010] gi|308366087|gb|EFP54938.1| GTP-binding protein engA [Mycobacterium tuberculosis SUMu012] gi|323719804|gb|EGB28918.1| GTP-binding protein engA [Mycobacterium tuberculosis CDC1551A] gi|326903328|gb|EGE50261.1| GTP-binding protein engA [Mycobacterium tuberculosis W-148] gi|328459000|gb|AEB04423.1| GTP-binding protein engA [Mycobacterium tuberculosis KZN 4207] Length = 463 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 142/455 (31%), Positives = 227/455 (49%), Gaps = 34/455 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ A+ G F + DT G + Sbjct: 29 VAVVGRPNVGKSTLVNRILGRREAVVQDIPGVTRDRVCYDALWTGRRFVVQDTGGW-EPN 87 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + + +Q +A+ A ++ ++D+ G T D A L + P+ + +NK+D+ Sbjct: 88 AKGLQRLVAEQASVAMRTADAVILVVDAGVGATAADEAAARILLRSGKPVFLAANKVDSE 147 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + ++SL E ISA H G ++L + + Sbjct: 148 KGESDAAALWSLGLGEPHAISAMHGRGVADLLDGVLAALPEV------------------ 189 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 E+ ++ G P R+A+VG+PNVGKS+L+N+L G R + +G T D V Sbjct: 190 -GESASASG--------GPRRVALVGKPNVGKSSLLNKLAGDQRSVVHEAAGTTVDPVDS 240 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 DTAG+R+ E ++ ++ + E IVL+DA+ P +QDL Sbjct: 241 LIELGGDVWRFVDTAGLRRKVGQASGHEFYASVRTHAAIDSAEVAIVLIDASQPLTEQDL 300 Query: 305 RIVDSVFNTGHAVVLALNKWDMV-SDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 R++ V G A+VLA NKWD+V D+ LLQ + + L Q+ IS +TG Sbjct: 301 RVISMVIEAGRALVLAYNKWDLVDEDRRELLQ---REIDRELVQVRWAQRVNISAKTGRA 357 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 + L+ ++ + W TRI T LN+WL + PPP + R+ + TQ + PP+F Sbjct: 358 VHKLVPAMEDALASWDTRIATGPLNTWLTEVTAATPPPVRGGKQPRILFATQATARPPTF 417 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 ++F T + Y+R+L RLR F G PIR+ Sbjct: 418 VLFTT--GFLEAGYRRFLERRLRETFGFDGSPIRV 450 >gi|194476538|ref|YP_002048717.1| GTP-binding protein EngA [Paulinella chromatophora] gi|171191545|gb|ACB42507.1| GTP-binding protein EngA [Paulinella chromatophora] Length = 456 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 132/468 (28%), Positives = 232/468 (49%), Gaps = 39/468 (8%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AI+G PNVGKSTL NRL + + A+V + G+TRDR Y + F +VDT G+ Sbjct: 5 TVAIIGRPNVGKSTLANRLCQSREAIVHDELGVTRDRTYQKGFWGEKQFQVVDTGGLVFD 64 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + ++ Q +A++EA + + ++D + G+T D I FLR + PI++ NK ++ Sbjct: 65 DDSEFLPEIRKQAIIALSEATVAVVIVDGQQGLTAADETIAEFLRGHSCPILLAVNKCES 124 Query: 124 -RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 E +SL ISA H GT EL I Sbjct: 125 PEQGLSMAAEFWSLGLGTPFPISAIHGAGTGELLDKI----------------------- 161 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 +T ++++ + +++A+VGRPNVGKS+L+N + G R + G TRD++ Sbjct: 162 ------VTYLDGTTIEEENDIVQLAIVGRPNVGKSSLLNAICGETRAIVSQIRGTTRDTI 215 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + + + DTAG+R+ + E ++ +S +++ + ++++DA +Q Sbjct: 216 DTYVEREGYHWRLIDTAGIRRRRSVDYGPELFSINRSFKAIERSDVCLLIIDALDGVTEQ 275 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLL----QDLRTKAIKNLPQIGDIYINTISG 358 D R+ + G A ++ +NKWD + + + +DLR+K + L ++I+ + G Sbjct: 276 DQRLAGRIEEEGRACIIIINKWDAIEKDSHTMSAMEKDLRSK-LYFLNWAPMLFISALKG 334 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPT-IFNRYNRLKYITQIQ 417 + E + L V VLE ++ R+TTS +N L++ PPP R R+ Y TQ+ Sbjct: 335 QRVESIFALAVLVLE---QYRRRVTTSVVNEVLKEAVSWRPPPANRGGRQGRIYYGTQVT 391 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 + PPSF +F ++YKRY+ ++R G P+++ ++ + Sbjct: 392 NCPPSFTLFVNEAKLFGDTYKRYIERQIREGLGFEGSPLKLFWRGKQQ 439 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 38/124 (30%), Positives = 64/124 (51%), Gaps = 2/124 (1%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 I +AIVG PNVGKS+L N + + A+V G TRD + G + ++DTAGI Sbjct: 176 IVQLAIVGRPNVGKSSLLNAICGETRAIVSQIRGTTRDTIDTYVEREGYHWRLIDTAGIR 235 Query: 62 DGKNCSIAKQMN--DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 ++ ++ +++ AI + + L +ID+ G+T D + + ++ II+ N Sbjct: 236 RRRSVDYGPELFSINRSFKAIERSDVCLLIIDALDGVTEQDQRLAGRIEEEGRACIIIIN 295 Query: 120 KMDT 123 K D Sbjct: 296 KWDA 299 >gi|296164609|ref|ZP_06847176.1| ribosome-associated GTPase EngA [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295900028|gb|EFG79467.1| ribosome-associated GTPase EngA [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 466 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 140/456 (30%), Positives = 223/456 (48%), Gaps = 36/456 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA-DG 63 +A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ A+ G F + DT G D Sbjct: 32 VAVVGRPNVGKSTLVNRILGRREAVVQDVPGVTRDRVSYDALWTGRRFVVQDTGGWEPDA 91 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 K + + + +Q +A+ A ++ ++D+ G T D A L + P+ + +NK+D+ Sbjct: 92 KG--LQQLVAEQASVAMRTADAVILVVDASVGATSADEAAARILLRSGKPVFLAANKVDS 149 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + ++SL E +SA H G ++L + + +E Sbjct: 150 EKGEADAAALWSLGLGEPHAVSAMHGRGVADLLDEVLAALPEV--------------SEA 195 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 +P P R+A+VG+PNVGKS+L+N+L G R + +G T D V Sbjct: 196 APAPG-------------GPRRVALVGKPNVGKSSLLNKLAGDQRSVVHDVAGTTVDPVD 242 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 DTAG+R+ E ++ ++ E +VL+DA+ P +QD Sbjct: 243 SLIELGGKVWRFVDTAGLRRKVGQASGHEFYASVRTHSAIDAAEVVVVLIDASQPLTEQD 302 Query: 304 LRIVDSVFNTGHAVVLALNKWDMV-SDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 R++ V G A+VLA NKWD+V D+ LL+ + + L Q+ IS TG Sbjct: 303 QRVLSMVIEAGRALVLAFNKWDLVDEDRRELLE---REIDRELVQLRWAQRVNISAHTGR 359 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 + L+ ++ W RI T LNSWL++ PPP + R+ + TQ + PP+ Sbjct: 360 AVQKLVPAMETALASWDMRIPTGPLNSWLKEVVAATPPPVRGGKQPRILFATQATARPPT 419 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 F++F T + Y+R+L RLR F G PIR+ Sbjct: 420 FVLFTT--GFLEAGYRRFLERRLREAFGFEGSPIRI 453 >gi|302806046|ref|XP_002984773.1| hypothetical protein SELMODRAFT_121150 [Selaginella moellendorffii] gi|300147359|gb|EFJ14023.1| hypothetical protein SELMODRAFT_121150 [Selaginella moellendorffii] Length = 490 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 148/506 (29%), Positives = 247/506 (48%), Gaps = 79/506 (15%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 ++ +AIVG PNVGKS LFNR+V + MA+V + PG+TRDRLYG+ + F ++DT G+ Sbjct: 6 LLPKVAIVGRPNVGKSALFNRIVGRNMAIVHDEPGVTRDRLYGRVRGSVQEFMLIDTGGV 65 Query: 61 -----------ADGK-----------NCSIAKQMNDQTELAINEAHLILFLIDSKAGITP 98 A G + + Q A+ EA ++F++D +AG+T Sbjct: 66 LTIPTSAESGLAGGSVAAAQAKKDAAVAGLPSMIEQQAASAVEEACALVFVVDGQAGLTS 125 Query: 99 YDHAITSFLRK--KNIPIIIVSNKMDT-RIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 D I ++LR+ K+ I + NK ++ + E +SL F V +SA G +L Sbjct: 126 ADIEIGNWLRRKFKHKKIALAVNKCESPKKGLLQAAEFWSLGFTP-VPVSAISGSGVPDL 184 Query: 156 HSVIFKIFKQKYPNHPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVG 215 + K+K LE E + +PL +A++GRPNVG Sbjct: 185 LEDVTSAIKEK--QDELEASEGD-----------------------RPLSVAIIGRPNVG 219 Query: 216 KSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPI-EIFDTAGMRKPSRI------T 268 KS+++N ++G R + SG TRD++ + + DTAG+RK + I T Sbjct: 220 KSSILNAIVGKERTIVSPVSGTTRDAIDTEVAGPEGKVFRLIDTAGIRKRAAIASGGSKT 279 Query: 269 ESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVS 328 ESL V+ +++++R + ++++A +QD R+ + + G A ++ +NKWD V Sbjct: 280 ESL---CVQSALRAIRRADVVALVIEAMTCATEQDYRLGERIEKDGKACIIVVNKWDTVP 336 Query: 329 DK---------LNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWK 379 DK +++ + LR +K P I S +G+ + ++ + L + + Sbjct: 337 DKNAESTYWYDMDVREKLRV--LKWAP------IVYTSATSGQRVQKILATALSAGQERE 388 Query: 380 TRITTSYLNSWLQKT-QLQNPPPTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYK 438 RI+T+ LN +Q ++ PP T R RL + TQ + PP+F+ F P+ YK Sbjct: 389 RRISTAILNQVVQDAINMKQPPTTRGGRKGRLYFCTQATTRPPTFVFFVNDEKLFPDDYK 448 Query: 439 RYLINRLRINFSLSGIPIRMCFQSSK 464 RY+ +LR N G PIR+ ++S + Sbjct: 449 RYMEKQLRQNIGFPGTPIRLFWRSKR 474 >gi|283779752|ref|YP_003370507.1| small GTP-binding protein [Pirellula staleyi DSM 6068] gi|283438205|gb|ADB16647.1| small GTP-binding protein [Pirellula staleyi DSM 6068] Length = 486 Score = 211 bits (536), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 126/467 (26%), Positives = 228/467 (48%), Gaps = 39/467 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + IVG PNVGKS+L N L K++++V + G+TRDR+ G F +VDT GI Sbjct: 6 VVIVGRPNVGKSSLLNWLAGKRISIVDDTAGVTRDRITYLMEEEGRFFELVDTGGIGIVD 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 ++ KQ+ Q E+AI A L+LF++D+++GI P D + LR + PI+ V+NK D Sbjct: 66 CDNLTKQVEQQIEIAIESADLVLFVVDTRSGILPLDEEVAKRLRYIDKPIVCVANKADHD 125 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 E Y L ++V +S + EL +I LE + EES Sbjct: 126 AIDCQADEFYKLGRGKLVRVSTLQNRNKDELLHMI------------LERLPKPDDLEES 173 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P+E I +++A+ GR N GKST +N L R++ +G TRDS+ + Sbjct: 174 PEEPI--------------MKVAICGRRNTGKSTFVNTLARAERVIVSEVAGTTRDSIDV 219 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + DT G+R+ + ++ + ++ +S+R + ++ D K D Sbjct: 220 RFELDGKTFMAIDTPGLRRNRSVRTDIDFYSTHRAQRSIRRADVVLLFFDCKQRLSKVDK 279 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKL------NLLQDLRTKAIKNLPQIGDIYINTISG 358 ++ + + + +NKWD++ ++ + L+D N P + + I ++G Sbjct: 280 QLCKYIADNYRPCIFVVNKWDLLYGQMPTERWVDYLRD-------NFPTMWHVPIAFVTG 332 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 +TG+ + L+ + K R++T+ LN ++ ++PP + ++ + TQ+ + Sbjct: 333 QTGKNVKALLNHAQMLYKQSLERVSTAQLNKLIRAAMERHPPAMHGSMRPKIYFGTQVGT 392 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 PP+ ++ C P +Y+RYL++ LR + S +PI++ Q ++ Sbjct: 393 QPPTIVLMCNEPKAFQPAYRRYLLSILRDHLSFGEVPIKLYLQKRRS 439 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 60/130 (46%), Gaps = 6/130 (4%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 I +AI G N GKST N L + + +V G TRD + + ++G F +DT G+ Sbjct: 178 IMKVAICGRRNTGKSTFVNTLARAERVIVSEVAGTTRDSIDVRFELDGKTFMAIDTPGLR 237 Query: 62 DGKNCSIAKQMN----DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIV 117 +N S+ ++ + + +I A ++L D K ++ D + ++ P I V Sbjct: 238 --RNRSVRTDIDFYSTHRAQRSIRRADVVLLFFDCKQRLSKVDKQLCKYIADNYRPCIFV 295 Query: 118 SNKMDTRIAQ 127 NK D Q Sbjct: 296 VNKWDLLYGQ 305 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 34/57 (59%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGM 261 ++ +VGRPNVGKS+L+N L G + +G+TRD ++ + E+ DT G+ Sbjct: 5 QVVIVGRPNVGKSSLLNWLAGKRISIVDDTAGVTRDRITYLMEEEGRFFELVDTGGI 61 >gi|302808277|ref|XP_002985833.1| hypothetical protein SELMODRAFT_123195 [Selaginella moellendorffii] gi|300146340|gb|EFJ13010.1| hypothetical protein SELMODRAFT_123195 [Selaginella moellendorffii] Length = 492 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 148/506 (29%), Positives = 247/506 (48%), Gaps = 79/506 (15%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 ++ +AIVG PNVGKS LFNR+V + MA+V + PG+TRDRLYG+ + F ++DT G+ Sbjct: 8 LLPKVAIVGRPNVGKSALFNRIVGRNMAIVHDEPGVTRDRLYGRVRGSVQEFMLIDTGGV 67 Query: 61 -----------ADGK-----------NCSIAKQMNDQTELAINEAHLILFLIDSKAGITP 98 A G + + Q A+ EA ++F++D +AG+T Sbjct: 68 LTIPTSAESGLAGGSVAAAQAKKDAAAAGLPSMIEQQAASAVEEACALVFVVDGQAGLTS 127 Query: 99 YDHAITSFLRK--KNIPIIIVSNKMDT-RIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 D I ++LR+ K+ I + NK ++ + E +SL F V +SA G +L Sbjct: 128 ADIEIGNWLRRKFKHKKIALAVNKCESPKKGLLQAAEFWSLGFTP-VPVSAISGSGVPDL 186 Query: 156 HSVIFKIFKQKYPNHPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVG 215 + K+K LE E + +PL +A++GRPNVG Sbjct: 187 LEDVTSAIKEK--QDELEASEGD-----------------------RPLSVAIIGRPNVG 221 Query: 216 KSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPI-EIFDTAGMRKPSRI------T 268 KS+++N ++G R + SG TRD++ + + DTAG+RK + I T Sbjct: 222 KSSILNAIVGKERTIVSPVSGTTRDAIDTEVTGPEGKVFRLIDTAGIRKRAAIASGGSKT 281 Query: 269 ESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVS 328 ESL V+ +++++R + ++++A +QD R+ + + G A ++ +NKWD V Sbjct: 282 ESL---CVQSALRAIRRADVVALVIEAMTCATEQDYRLGERIEKDGKACIIVVNKWDTVP 338 Query: 329 DK---------LNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWK 379 DK +++ + LR +K P I S +G+ + ++ + L + + Sbjct: 339 DKNAESTYWYDMDVREKLRV--LKWAP------IVYTSATSGQRVQKILATALSAGQERE 390 Query: 380 TRITTSYLNSWLQKT-QLQNPPPTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYK 438 RI+T+ LN +Q ++ PP T R RL + TQ + PP+F+ F P+ YK Sbjct: 391 RRISTAILNQVVQDAINMKQPPTTRGGRKGRLYFCTQATTRPPTFVFFVNDEKLFPDDYK 450 Query: 439 RYLINRLRINFSLSGIPIRMCFQSSK 464 RY+ +LR N G PIR+ ++S + Sbjct: 451 RYMEKQLRQNIGFPGTPIRLFWRSKR 476 >gi|330467062|ref|YP_004404805.1| GTP-binding protein Der [Verrucosispora maris AB-18-032] gi|328810033|gb|AEB44205.1| GTP-binding protein Der [Verrucosispora maris AB-18-032] Length = 467 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 150/462 (32%), Positives = 227/462 (49%), Gaps = 35/462 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI-ADG 63 +A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ A +G F +VDT G D Sbjct: 27 VAVVGRPNVGKSTLVNRIIGRRQAVVEDVPGVTRDRIPYDAQWSGRSFTVVDTGGWEPDA 86 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 K+ + A +T +A + + + + G T D A LR+ P+I+V+NK D Sbjct: 87 KDRAAAIAAQAETAVATADVVVFVVD--ATVGSTDVDEAAVKMLRRSAKPVILVANKADN 144 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + ++SL E ISA H G+ +L I P P +++EN R Sbjct: 145 ANIELEATSLWSLGLGEPHPISALHGRGSGDLLDAIMAAL----PEAP-KIVENRPRG-- 197 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 P R+A+VGRPNVGKS+L+NR G R + S +G T D V Sbjct: 198 -------------------PRRVALVGRPNVGKSSLLNRFSGEERAVVDSVAGTTVDPVD 238 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + DTAG+RK E ++ ++ E +VLLD++ P +QD Sbjct: 239 SLVTIGGETWHLVDTAGLRKRVGKASGTEYYASLRTAAAIEAAEVAVVLLDSSEPISEQD 298 Query: 304 LRIVDSVFNTGHAVVLALNKWDMV-SDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 RI+ V G A+V+A NKWD+V +D+ L + ++ +P I +N +S TG Sbjct: 299 QRILSMVTEAGRAMVIAFNKWDLVDADRRYYLDKEIDRELRRIPWA--IRLN-LSAMTGR 355 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 +D L ++ W+TRI T+ LN+WL P P R R+ + TQ +PP Sbjct: 356 AVDKLAAALHRALDSWETRIPTAQLNAWLTALVQATPHPVRGGRAPRILFATQAGVAPPR 415 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 F++F T P + Y+R++ +LR F G PI + + K Sbjct: 416 FVLFTTGP--LDAGYQRFVERKLREEFGFEGSPIEISVRPRK 455 >gi|87125615|ref|ZP_01081460.1| putative GTP-binding protein [Synechococcus sp. RS9917] gi|86166915|gb|EAQ68177.1| putative GTP-binding protein [Synechococcus sp. RS9917] Length = 455 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 125/463 (26%), Positives = 220/463 (47%), Gaps = 30/463 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKSTL NRL + + A+V + PG+TRDR Y F +VDT G+ Sbjct: 6 VAIIGRPNVGKSTLVNRLCRSREAIVHDEPGVTRDRTYQDGYWGDREFKLVDTGGLVFDD 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 + ++ +Q LA+ EA + + ++D + G+T D +I +LR + P ++ NK ++ Sbjct: 66 DSEFLPEIREQASLAMAEASVAVVIVDGQQGVTAADESIAEWLRSQACPTLLAVNKCESP 125 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 E + L E ISA H GT EL + Sbjct: 126 EQGLAMAAEFWGLGLGEPYPISAIHGAGTGELLDQVLTFL-------------------- 165 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 PK+ E ++P+++A++GRPNVGKS+L+N + G R + G TRD++ Sbjct: 166 PPKDQEGDE--------AEPIQMAIIGRPNVGKSSLLNAICGEPRAIVSPIRGTTRDTID 217 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + DTAG+R+ + E + +S +++ + ++++DA +QD Sbjct: 218 TRLERNGLSWRLVDTAGIRRRRSVHYGPEFFGINRSFKAIERSDVCVLVIDALDGVTEQD 277 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 R+ + G A V+ +NKWD V + + + + L + + S TG+ Sbjct: 278 QRLAGRIEEEGRACVVVVNKWDAVEKDSHTMPAMEKELRAKLYFLDWAPMLFTSALTGQR 337 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKT-QLQNPPPTIFNRYNRLKYITQIQSSPPS 422 +D + + + R++TS +N L++ ++PP T R R+ Y TQ+ PPS Sbjct: 338 VDSIFALAALAVEQHRRRVSTSVVNEVLKEALSWRSPPTTRGGRQGRVYYGTQVAVRPPS 397 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 F +F P ++Y+RY+ ++R G P+++ ++ + Sbjct: 398 FTLFVNEPKLFGDTYRRYVERQIREGLGFDGTPLKLFWRGKQQ 440 >gi|28493018|ref|NP_787179.1| bifunctional cytidylate kinase/GTP-binding protein [Tropheryma whipplei str. Twist] gi|28572231|ref|NP_789011.1| bifunctional cytidylate kinase/GTP-binding protein [Tropheryma whipplei TW08/27] gi|28410362|emb|CAD66748.1| putative GTP-binding protein [Tropheryma whipplei TW08/27] gi|28476058|gb|AAO44148.1| cytidylate kinase/GTP-binding protein fusion [Tropheryma whipplei str. Twist] Length = 686 Score = 210 bits (535), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 136/463 (29%), Positives = 228/463 (49%), Gaps = 54/463 (11%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI--- 60 T+ IVG PNVGKS L N ++ ++ AVV N PG+TRDR+ A G F +VDT G Sbjct: 256 TVVIVGRPNVGKSALVNCILGRREAVVENRPGVTRDRVVYPAFWAGRPFTLVDTGGWECD 315 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 A+G + + Q E+ ++ A +I+F++D + G D I L+++N PI +V+NK Sbjct: 316 AEGLDAEVVA----QAEIGMSIADIIIFVVDVQHGPVSTDAVIARNLQRQNKPIFLVANK 371 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 D + + + +SL + SA H G ++L ++ + + P+ Sbjct: 372 ADNASSDSDVAQFWSLGLGQPYACSATHGRGVADLMDIVMQSAQVHTPSF---------- 421 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 S R+A++GRPNVGKS+LIN+L R + +G TRD Sbjct: 422 -------------------CSGAPRVALIGRPNVGKSSLINQLTNSRRAIVDDLAGTTRD 462 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 + + DTAG+R+ + + + ++ +R E ++LLDA+ Sbjct: 463 PLDALAVIGDKSWLFVDTAGLRRKFKSQKGADFYAYLRATTVLRRTEIALLLLDASHAIT 522 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKN-------LPQIGDIYI 353 +QD+RI + V +G A+V+A+NKWD++ ++ + + I N P++ Sbjct: 523 EQDVRIAEMVVESGRALVIAINKWDLLDEERRYWLE---REIDNTFFRFAWAPRV----- 574 Query: 354 NTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYI 413 IS RTG G+ L ++ W TR+ T+ +N +LQ+ + P PT R R+ + Sbjct: 575 -NISARTGRGVKQLATALQTALTNWNTRLNTARVNHFLQRITREQPHPTRGGRRPRILFA 633 Query: 414 TQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 +Q +PP+F +F T + +Y+R+L +R S +G PI Sbjct: 634 SQTGVAPPTFTLFTT--GFLEPTYRRFLQKSIRSQHSFTGSPI 674 >gi|123965688|ref|YP_001010769.1| GTP-binding protein EngA [Prochlorococcus marinus str. MIT 9515] gi|166225838|sp|A2BV51|DER_PROM5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|123200054|gb|ABM71662.1| GTP-binding protein (HSR1-related) [Prochlorococcus marinus str. MIT 9515] Length = 458 Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 135/473 (28%), Positives = 240/473 (50%), Gaps = 38/473 (8%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 +IAI+G PNVGKSTL NRL + A+V + PG+TRDR Y A G F +VDT G+ Sbjct: 5 SIAIIGRPNVGKSTLVNRLCQSNDAIVFDKPGVTRDRTYQNASWGGKEFQVVDTGGLVFE 64 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + ++ Q LA+ EA + LF++D G+T D +I +LR + I+ NK ++ Sbjct: 65 DDSEFLPEIRTQVFLALEEASIALFVVDGNQGVTTGDLSIAKWLRNSDCKTIVAVNKCES 124 Query: 124 -RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 + E + L E +SA H GT +L ++ + Sbjct: 125 LSLGISMASEFWKLGLGEPYPVSAIHGSGTGDLLDLVI---------------------D 163 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 E PK+ V++ + ++++GRPNVGKS+L+N + G R + SG T DS+ Sbjct: 164 ELPKD-------FDVEDKEDKVMMSIIGRPNVGKSSLLNAICGEKRAIVSDISGTTTDSI 216 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 +H +I DTAG+R+ + E + ++ +S+ + ++++DA Q Sbjct: 217 DTLIKKNSHLWKIVDTAGIRRKKNVKYGTEFFGINRAFKSIDRSDVCVLVIDAIDGVTDQ 276 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMV----SDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 D ++ + G A V+ +NKWD+V S + ++LR+K + L I+I+ ++G Sbjct: 277 DQKLAGRIEEQGRACVIVVNKWDLVEKNNSTIYQVEKELRSK-LYFLHWSKMIFISALTG 335 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKT-QLQNPPPTIFNRYNRLKYITQIQ 417 + E + + ++ + +++ R+TTS +N L++ ++PP + RL Y TQ++ Sbjct: 336 QRVENIFEHALNAVTQHRM---RVTTSVVNEVLKEALGWKSPPTKRSGKQGRLYYGTQVK 392 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 + PP+F +F P +Y+RY+ ++R+N G PI + ++ + ++K Sbjct: 393 NQPPTFTLFVNDPKLFGITYRRYIEKQIRLNLGFEGSPIILLWRGKQKRDLEK 445 >gi|42525602|ref|NP_970700.1| GTP-binding protein EngA [Treponema denticola ATCC 35405] gi|41815613|gb|AAS10581.1| GTP-binding protein EngA [Treponema denticola ATCC 35405] Length = 476 Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 145/470 (30%), Positives = 228/470 (48%), Gaps = 43/470 (9%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI---- 60 IAIVG PNVGKSTLFNR ++K+ ++ PG+TRD + QAIING+ +VDT G Sbjct: 33 IAIVGRPNVGKSTLFNRFLRKRRSITDPTPGVTRDPVEAQAIINGLPVMLVDTGGFKLTR 92 Query: 61 -ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGI-TPYDHAITSFLRKKNIPIIIVS 118 D +I + + ++T + +A IL L+D AG+ T D FLR +++ Sbjct: 93 SGDAFEDTIDELVMEKTISTLKKADRILLLLD--AGLATAEDEEFIQFLRPYFNKLVVAV 150 Query: 119 NKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 NK + YS FK + ISAEH SEL L + Sbjct: 151 NKTEGGRLMAEACNYYSYGFKSLTCISAEHGDNISELA-------------EELTAGLDF 197 Query: 179 KRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 + EE +++ +RI +VG+PN GKSTL N L G + + + +G T Sbjct: 198 SKVEELEEDDT--------------IRITIVGKPNTGKSTLANYLTGSSASIISNVAGTT 243 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RD V +++KN I DTAG+R+ +++ E +E +V ++++S+ + L+D Sbjct: 244 RDIVEGEFSYKNKKFLIQDTAGIRRKAKVNEDIEYYSVVRAIKSMDNADIVFHLIDVQEG 303 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 +QD +I+ N G V+ LNKWD++ +D + ++ + IS Sbjct: 304 LTEQDKKIIVQATNRGLGVIFVLNKWDLMEQTKKAFKDEEERIKVMFGKMDYAPVLAISA 363 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLN----SWLQKTQLQNPPPTIFNRYNRLKYIT 414 G G+ +L+ + +++ + +I TS LN WLQ PPP +YI Sbjct: 364 NEGTGIKELLNTAVKMFEQLNKKIETSALNIALKDWLQAA----PPPQGRQTAFTFRYIV 419 Query: 415 QIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 Q S P FL+F P+ + ESY RY+ N++R + IPI + + S+ Sbjct: 420 QTGSRPAEFLLFSNRPDYVTESYMRYIQNKIRSDLGFEMIPILLKVKGSR 469 >gi|33860948|ref|NP_892509.1| GTP-binding protein EngA [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|41017012|sp|Q7V2S6|DER_PROMP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|33639680|emb|CAE18850.1| GTP-binding protein (HSR1-related) [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 458 Score = 209 bits (533), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 138/473 (29%), Positives = 235/473 (49%), Gaps = 38/473 (8%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 +IAI+G PNVGKSTL NRL + A+V + PG+TRDR Y A G F +VDT G+ Sbjct: 5 SIAIIGRPNVGKSTLVNRLCQSNDAIVFDKPGVTRDRTYQNASWAGREFQVVDTGGLVFE 64 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD- 122 + ++ Q LA+ EA L LF++D G+T D +I +LR I+ NK + Sbjct: 65 DDSEFLPEIRTQVFLALEEASLALFVVDGNQGVTDGDLSIAKWLRNSACKTIVAVNKCES 124 Query: 123 TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 T + E + L E +SA H GT +L ++ F Sbjct: 125 TSLGVSLASEFWKLGLGEPYPVSAIHGSGTGDLLDLVIDGF------------------- 165 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 PK+ +V++ + ++++GRPNVGKS+L+N + G R + SG T DS+ Sbjct: 166 --PKD-------LNVEDKEDKIMMSIIGRPNVGKSSLLNAICGEKRAIVSDISGTTTDSI 216 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 +H +I DTAG+R+ + E + ++ +S+ + ++++DA Q Sbjct: 217 DTLIKKDSHLWKIVDTAGIRRKKNVKYGTEFFGINRAFKSIDRSDVCVLVIDAIDGVTDQ 276 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMV----SDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 D ++ + G A V+ +NKWD+V S + ++LR+K + L I+I+ + Sbjct: 277 DQKLAGRIEEQGRACVIVVNKWDLVEKNNSTIYQVEKELRSK-LYFLHWSKMIFISAL-- 333 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKT-QLQNPPPTIFNRYNRLKYITQIQ 417 TG+ + ++ L + R+TTS +N L++ ++PP + RL Y TQ++ Sbjct: 334 -TGQRVQNIFEHALSAVTQHRRRVTTSVVNEVLKEALGWKSPPTKRSGKQGRLYYGTQVK 392 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 + PP+F +F P +Y+RY+ ++R+N G PI + ++ + ++K Sbjct: 393 NQPPTFTLFVNDPKLFGITYRRYIEKQIRLNLGFEGSPIILLWRGKQQRDLEK 445 >gi|320108687|ref|YP_004184277.1| ribosome-associated GTPase EngA [Terriglobus saanensis SP1PR4] gi|319927208|gb|ADV84283.1| ribosome-associated GTPase EngA [Terriglobus saanensis SP1PR4] Length = 633 Score = 209 bits (533), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 138/465 (29%), Positives = 233/465 (50%), Gaps = 22/465 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+ G PNVGKSTLFNRL + ++VG+ PGITRDR+YG+ IVDT G+ Sbjct: 165 IAVCGRPNVGKSTLFNRLTGTRRSIVGDEPGITRDRIYGEIEWQSEYARIVDTGGVVPDD 224 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I ++ Q +A++EA I+ ++D + + D + L + I + NKMDT Sbjct: 225 EALIPSEIYRQARVALDEADAIIMVVDGRTELAAPDLELARILLRSGKHIFLAVNKMDTV 284 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE- 183 + L F+++ ISAEH+ G +L +F+ + P E+ E + + Sbjct: 285 QITSDAENFRQLGFRDVFAISAEHNNGIGDLLDAVFETLPRPEVEAPEELEEVWEEEPDP 344 Query: 184 -SPK-ENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 +PK + S G+ SK ++A++GRPNVGKSTL+N L G +R + +G TRD+ Sbjct: 345 NAPKPRKLRSHGEYD----SKETKVAIIGRPNVGKSTLLNALTGTDRSIVSPIAGTTRDA 400 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 V H DTAG+R+ + T E+ +V + + + + ++++DAT Sbjct: 401 VDELVERNGHGFRFVDTAGIRRKGKTTLMAEKLSVIMARKHLEAADVGLLIIDATEGVAA 460 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMV----------SDKLNLLQDLRTKAIKNLPQIGDI 351 D I +G +V++ +NKWD+V +D+ + +R A+K L + Sbjct: 461 LDANIGGYAHESGRSVIIVVNKWDLVTTHRTDGQPPADQKAYTEQVR-HALKYLDYAPLL 519 Query: 352 YINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLK 411 + IS G ++ + V ++ + + R+TT +N +L Q N+ ++ Sbjct: 520 F---ISAAEGINVNSVFREVQKVARERRKRVTTGQMNRFLADVDFQR-ASVPMNKRVKIY 575 Query: 412 YITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 Y+TQ +PP+F++F K+ ++R+L N++R F G PI Sbjct: 576 YMTQAAVAPPTFVLFTDRDVKLHFGFERFLENQVREAFGFVGTPI 620 >gi|225873267|ref|YP_002754726.1| ribosome-associated GTPase EngA [Acidobacterium capsulatum ATCC 51196] gi|225793600|gb|ACO33690.1| ribosome-associated GTPase EngA [Acidobacterium capsulatum ATCC 51196] Length = 472 Score = 209 bits (532), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 137/465 (29%), Positives = 231/465 (49%), Gaps = 21/465 (4%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T AIVG PNVGKSTLFNRL + + ++VG+ PGITRDR+YG+ G +VDT GI Sbjct: 3 TFAIVGRPNVGKSTLFNRLTESRRSIVGDEPGITRDRIYGEVRWAGRTARLVDTGGIVPD 62 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 I ++ Q +A+ EA I+ ++D + + D + L + P+ + NK+DT Sbjct: 63 DEALIPAEIFRQARVALEEAEAIVMVVDGRTELAAPDLDLARLLLRTGKPLFLAVNKIDT 122 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKI--FKQKYPNHPLEMIENNKRN 181 + L + +V ISAEH +L +F + F + +E + Sbjct: 123 PQLDASAENFRQLGIQNLVAISAEHGHNVGDLLDEVFAVLHFPEPETEPEVESEAESDGA 182 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 E P+ + G+ R+A++GRPNVGKSTL+N L G +R + +G TRD+ Sbjct: 183 AEKPEPLHRTHGEYE----QPETRVAIIGRPNVGKSTLLNALTGSSRAIVSPIAGTTRDA 238 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 V + I DTAG+R+ + E+ +V + + + + ++++DAT Sbjct: 239 VDEVIEHNGQTLRIVDTAGIRRKGKTYLMAEKLSVVMARRHLEAADVALLVIDATEGVTA 298 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMV----------SDKLNLLQDLRTKAIKNLPQIGDI 351 D I +G +V++ +NKWD V +D+ + +R +K L I Sbjct: 299 SDATIGGYAHESGRSVIIVVNKWDAVTTGRTDGKPPADRAIFEEQVRDH-LKYLSYAPVI 357 Query: 352 YINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLK 411 +I+ GR L+ ++ +V+ + + R+TT +N +L + Q + ++ R+ Sbjct: 358 FISAAEGRN---LNRILDAVMRVAAERRKRVTTGQMNRFLDQIDFQRAGVPMSHKM-RIF 413 Query: 412 YITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 Y+TQ +PP+F++F K+ S++R+L N++R F G PI Sbjct: 414 YMTQAAVAPPTFVLFTNRDVKLHFSFERFLENQIRAAFGFEGSPI 458 >gi|229820636|ref|YP_002882162.1| small GTP-binding protein [Beutenbergia cavernae DSM 12333] gi|229566549|gb|ACQ80400.1| small GTP-binding protein [Beutenbergia cavernae DSM 12333] Length = 495 Score = 209 bits (532), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 136/470 (28%), Positives = 236/470 (50%), Gaps = 56/470 (11%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI---A 61 +A++G PNVGKSTL NR++ ++ AVV + PG+TRDR+ A G F +VDT G A Sbjct: 61 LAVIGRPNVGKSTLVNRILGRREAVVQDVPGVTRDRVRYTAEWAGRPFVLVDTGGWEHDA 120 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 G + +A +Q E+A+ A ++F++D+ G T D + LRK P+++V+NK+ Sbjct: 121 RGLHARVA----EQAEIAVELADAVMFVVDAAVGATDTDERVVRILRKSGKPVLLVANKV 176 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D + + +++L E SA H G+ +L I ++ Sbjct: 177 DDARGEADAAALWNLGLGEPFATSALHGRGSGDLLDAALAILPER--------------- 221 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 ++ + S + P R+A+VG+PNVGKS+L+N L G R++ +G TRD Sbjct: 222 --------SAVARPSGRG--GPRRVALVGKPNVGKSSLLNSLTGSERVVVDDVAGTTRDP 271 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 V P DTAG+R+ + + ++ ++ E +V++DA++P + Sbjct: 272 VDELIELGGRPWVFVDTAGIRRRVHQAQGADFYASLRTQAAIEKAEVAVVVVDASVPLTE 331 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVSD----------KLNLLQDLRTKAIKNLPQIGDI 351 QD+R+V V + G A+V+A NKWD++ +L+L+Q ++ P++ Sbjct: 332 QDIRVVQEVIDAGRALVIAYNKWDLMDPERRPFLEREIELDLVQ------VQWAPRV--- 382 Query: 352 YINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLK 411 IS +T +D + + + W +R+ T LN++L + +P P + R+ Sbjct: 383 ---NISAKTRWHVDRVAKHLDTALESWDSRVPTGRLNAFLGELAAAHPHPVRSGKQPRVL 439 Query: 412 YITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 + TQ + PP F++F T + Y+RY+ RLR F +G PI++ + Sbjct: 440 FATQADTRPPRFVLFAT--GFLEPGYRRYIERRLRETFGFAGTPIQLSVR 487 >gi|258611783|ref|ZP_05711645.1| GTP-binding protein engA [Listeria monocytogenes FSL R2-503] gi|258606169|gb|EEW18777.1| GTP-binding protein engA [Listeria monocytogenes FSL R2-503] Length = 345 Score = 209 bits (532), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 108/324 (33%), Positives = 185/324 (57%), Gaps = 29/324 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST+FNR+V +++++V + PG+TRDR+Y A G FNI+DT GI D Sbjct: 6 VAIVGRPNVGKSTIFNRIVGERVSIVEDVPGVTRDRIYNSAEWLGKEFNIIDTGGI-DLS 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +Q+ Q E+AI+EA +I+F+ + + G+T D + L + N PI++ NK+D Sbjct: 65 DEPFLEQIRAQAEIAIDEADVIIFITNGREGVTDADEQVAKILYRSNKPIVLAINKVDNP 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + Y+ YSL F E IS H LG ++ + + +P + EE Sbjct: 125 EMRDQIYDFYSLGFGEPYPISGSHGLGLGDMLDAV----RAHFPK---------EEEEEY 171 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P + + + +++GRPNVGKS+++N LLG +R++ +G TRD++ Sbjct: 172 PDDTV---------------KFSLIGRPNVGKSSILNALLGEDRVIVSDIAGTTRDAIDT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 ++ + + DTAGMRK ++ ES E+ +V ++M+++ + +V+++A +QD Sbjct: 217 TYTFDGQDYVMIDTAGMRKRGKVYESTEKYSVLRAMRAIERSDVVLVVINAEEGIREQDK 276 Query: 305 RIVDSVFNTGHAVVLALNKWDMVS 328 RI + G A+++ +NKWD ++ Sbjct: 277 RIAGYAHDAGRAIIIVVNKWDAIN 300 >gi|281358431|ref|ZP_06244912.1| ribosome-associated GTPase EngA [Victivallis vadensis ATCC BAA-548] gi|281315054|gb|EFA99086.1| ribosome-associated GTPase EngA [Victivallis vadensis ATCC BAA-548] Length = 513 Score = 209 bits (531), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 129/471 (27%), Positives = 234/471 (49%), Gaps = 34/471 (7%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 I T+AIVG PNVGKS+LFN +V +++++V PG+TRDR+ + F ++DT G+ Sbjct: 14 IPTVAIVGRPNVGKSSLFNAIVGRRLSIVHEMPGVTRDRVVAPLVRGKCRFQLIDTGGLG 73 Query: 62 --DGKNCSI---AKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIII 116 G+ + ++ Q ++AI A +++ + + + G+ D + + LR+ P++ Sbjct: 74 MLSGETRKVDMWDSRIASQVDIAIGGADVLILVANVQDGVVNLDEEVAARLRESGKPVLF 133 Query: 117 VSNKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIE 176 +NK D + E L F++I +S H G + L K+ Q Sbjct: 134 AANKCDNPTLEHESVEFMKLGFRKIFPVSCLHKRGVNALVEAAIKLLPQ----------- 182 Query: 177 NNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSG 236 N++ +G+S + KPL IAVVGRPNVGKS+L+N LLG R++ +G Sbjct: 183 -----------NVSEDGESEAPAV-KPLNIAVVGRPNVGKSSLVNALLGEERVMVSDVAG 230 Query: 237 ITRDSVSISWNWK----NHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVL 292 TRD++ + + + + + DTAG+RK +++ +E +V ++ ++ + + + Sbjct: 231 TTRDAIDVDFTLRYQGGDRAAVLVDTAGLRKKAKVDTVVEFFSVMRAQAAIDRADLVLFV 290 Query: 293 LDATIP-FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDI 351 ++A+ QD RI + G A V+ NK+D+ + ++ L + +LP + Sbjct: 291 VEASPDGMTAQDRRIASMIQKAGKACVVVANKFDLYKSG-HKVRALEEELRYSLPGMNFS 349 Query: 352 YINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLK 411 + IS + LD L+ S+ ++ + I T LN L + PP + +L Sbjct: 350 PVVFISAKDRSNLDGLLDSIAQVMDQLELSIPTGVLNRVLADAFESSTPPVVGAAPLKLY 409 Query: 412 YITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 Y + + +PP L+F P ++Y +L N LR F L+G+P+ + ++ Sbjct: 410 YASMVGMTPPKVLLFVNNPKYCADNYLAFLKNTLRQAFDLTGVPLELELRA 460 >gi|223993343|ref|XP_002286355.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220977670|gb|EED95996.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 465 Score = 209 bits (531), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 133/428 (31%), Positives = 221/428 (51%), Gaps = 33/428 (7%) Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAI----TSFLRKKNIPIIIVS 118 G S+ M QT A + L+L + D++ G D T+ ++K I+I++ Sbjct: 11 GGKDSLDGAMIRQTMEAARRSDLVLLMFDARLGQIVADTGENPTNTNHPQQKQREIVILA 70 Query: 119 NK--------MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNH 170 NK MD I N EI F + + ISAEH G ++ VI K+ +K Sbjct: 71 NKLEGDRWASMDDNIVLDNLAEISRAGFGDPIPISAEHGEGMVDIAEVIHKLTIEKRLRL 130 Query: 171 PLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLL 230 L P EN E ++PL++A++GR NVGKSTL+N LLG +R++ Sbjct: 131 GL------------PPENADGELSKDGDMSNRPLQLAILGRQNVGKSTLVNSLLGEDRVI 178 Query: 231 TGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITES--LEQKTVKKSMQSVRTCET 288 G G+TRDS+S+ WK+ +++ DTAG+R+ + S +E V +M++++ + Sbjct: 179 AGDTPGLTRDSISVPLMWKDKHVQLVDTAGIRRGVKRERSNEIEDLAVLDAMRAMKFADV 238 Query: 289 TIVLLDATIPF-EKQDLRIVDSVFNTGHAVVLALNKWDMVSD----KLNLLQDLRTKAIK 343 +++LDA + ++Q+L I D+V G A+V+A NK D++ D K + ++ + Sbjct: 239 AVLVLDAQARYIQRQELAIADAVVREGRALVVAANKMDLIVDAGYTKEDFANAVQGQIET 298 Query: 344 NLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTI 403 P + + +S G+ + LM V E W ++T LN WL++ ++ PP+ Sbjct: 299 RFPMLRKTPVIAMSSLYGKNVHKLMPVVFEARDRWSRVVSTGMLNRWLEEVLDEHSPPSQ 358 Query: 404 FNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCF-QS 462 R ++KYI Q + PP+FL+FC P ++P +Y RYL + +FS G+ +RM +S Sbjct: 359 QGRPTKIKYILQTKGRPPTFLLFCNVP-ELPINYLRYLTRHFQDSFSYYGMEVRMVVKKS 417 Query: 463 SKNPYIKK 470 ++NPY K Sbjct: 418 AENPYASK 425 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 66/123 (53%), Gaps = 5/123 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G NVGKSTL N L+ + + G+ PG+TRD + + +VDTAGI G Sbjct: 154 LAILGRQNVGKSTLVNSLLGEDRVIAGDTPGLTRDSISVPLMWKDKHVQLVDTAGIRRGV 213 Query: 65 NCSIAKQMNDQTEL----AINEAHLILFLIDSKAG-ITPYDHAITSFLRKKNIPIIIVSN 119 + ++ D L A+ A + + ++D++A I + AI + ++ +++ +N Sbjct: 214 KRERSNEIEDLAVLDAMRAMKFADVAVLVLDAQARYIQRQELAIADAVVREGRALVVAAN 273 Query: 120 KMD 122 KMD Sbjct: 274 KMD 276 >gi|15639676|ref|NP_219126.1| GTP-binding protein EngA [Treponema pallidum subsp. pallidum str. Nichols] gi|189025914|ref|YP_001933686.1| GTP-binding protein EngA [Treponema pallidum subsp. pallidum SS14] gi|8134438|sp|P96128|DER_TREPA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|238689339|sp|B2S3S8|DER_TREPS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|1732241|gb|AAB38705.1| GTP-binding protein [Treponema pallidum] gi|3322993|gb|AAC65658.1| GTP-binding protein [Treponema pallidum subsp. pallidum str. Nichols] gi|189018489|gb|ACD71107.1| GTP-binding protein [Treponema pallidum subsp. pallidum SS14] gi|291060055|gb|ADD72790.1| ribosome-associated GTPase EngA [Treponema pallidum subsp. pallidum str. Chicago] Length = 460 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 136/459 (29%), Positives = 227/459 (49%), Gaps = 35/459 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + IVG PNVGKSTLFNRL+ ++ ++ N G+TRD + I+ G +VDT+G Sbjct: 23 VVIVGRPNVGKSTLFNRLLGRRRSITSNTSGVTRDSIEETVILRGFPLRLVDTSGFTVFS 82 Query: 65 NCSIAKQMND-----QTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 ++Q D QT +I A IL ++D + D + +LR +I N Sbjct: 83 EKKASRQHIDTLVLEQTYKSIQCADKILLVLDGTCE-SAEDEEVIQYLRPYWGKLIAAVN 141 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNK 179 K T + Y F ++ +SAEH L I + + ++ Sbjct: 142 K--TEGGEEVHYNYARYGFSTLICVSAEHGRNIDALERAIIQ-----------NLFSVDE 188 Query: 180 RNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITR 239 R E PK+++ +R+A+VG+PN GKSTL+N L+ L ++G TR Sbjct: 189 R-RELPKDDV--------------VRLAIVGKPNTGKSTLMNYLMRRTVSLVCDRAGTTR 233 Query: 240 DSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPF 299 D V+ +K + I DTAG+RK ++ ES+E +V +++ + + + ++DA F Sbjct: 234 DVVTGHVEFKQYKFIIADTAGIRKRQKVYESIEYYSVIRAISILNAVDIVLYIVDARDGF 293 Query: 300 EKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGR 359 +QD +IV + V+ LNKWD++ +L+ + ++ + + +S + Sbjct: 294 SEQDKKIVSQISKRNLGVIFLLNKWDLLEGSTSLIAKKKRDVRTAFGKMNFVPVVPVSAK 353 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 TG G+ D + V +I T++ TS LN+ L+ PPP + + LKY+ Q+ Sbjct: 354 TGHGISDALHCVCKIFAQLNTKVETSALNTALKDWVTSYPPPRKYGHVS-LKYLVQVSVR 412 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 P FL+F P++IPE+Y R+L NR+R + L IP+++ Sbjct: 413 PIEFLLFANRPDRIPENYVRFLQNRIREDLGLDSIPVKL 451 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 54/175 (30%), Positives = 91/175 (52%), Gaps = 11/175 (6%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + +AIVG PN GKSTL N L+++ +++V + G TRD + G F I DTAGI Sbjct: 197 VVRLAIVGKPNTGKSTLMNYLMRRTVSLVCDRAGTTRDVVTGHVEFKQYKFIIADTAGIR 256 Query: 62 DGKNC--SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 + SI + +N ++L+++D++ G + D I S + K+N+ +I + N Sbjct: 257 KRQKVYESIEYYSVIRAISILNAVDIVLYIVDARDGFSEQDKKIVSQISKRNLGVIFLLN 316 Query: 120 KMD------TRIA--QRNFYEIYS-LDFKEIVEISAEHDLGTSELHSVIFKIFKQ 165 K D + IA +R+ + ++F +V +SA+ G S+ + KIF Q Sbjct: 317 KWDLLEGSTSLIAKKKRDVRTAFGKMNFVPVVPVSAKTGHGISDALHCVCKIFAQ 371 Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 36/97 (37%), Positives = 62/97 (63%), Gaps = 7/97 (7%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGM--- 261 R+ +VGRPNVGKSTL NRLLG R +T + SG+TRDS+ + + P+ + DT+G Sbjct: 22 RVVIVGRPNVGKSTLFNRLLGRRRSITSNTSGVTRDSIEETVILRGFPLRLVDTSGFTVF 81 Query: 262 --RKPSRITESLEQKTVKKSMQSVRTCETTIVLLDAT 296 +K SR + ++ ++++ +S++ + +++LD T Sbjct: 82 SEKKASR--QHIDTLVLEQTYKSIQCADKILLVLDGT 116 >gi|330936977|gb|EGH41077.1| GTP-binding protein Der [Pseudomonas syringae pv. pisi str. 1704B] Length = 334 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 117/325 (36%), Positives = 189/325 (58%), Gaps = 8/325 (2%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ IA+VG PNVGKST+FNRL + + A+VG+ G+TRDR YG+A G + ++DT GI Sbjct: 1 MVPVIALVGRPNVGKSTMFNRLTRTRDAIVGDLSGLTRDRQYGEAKWQGRSYILIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + G + ++M +Q+ LAI EA ++LFL+D++AG T D I LRK+N +V+NK Sbjct: 61 S-GDEHGMDEKMAEQSLLAIEEADVVLFLVDARAGYTAADQMIGEHLRKRNKRSYVVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D E + + + ++ H G S++ +I +++P E+ E + Sbjct: 120 IDNIDENLARAEFSPMGLGDAIPVAGAHGRGISQM----LEIALREFPRDEDELEEGAEV 175 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 E + + S K+ ++IA++GRPNVGKSTL+NR+LG +R++ + G TRD Sbjct: 176 EEVAEGQEAKRIPGPSEKD---GIKIAIIGRPNVGKSTLVNRMLGEDRVIVYDEPGTTRD 232 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S+ I + + DTAG+RK +I E +E+ +V K++Q+++ I ++DA Sbjct: 233 SIYIPFERNEEKYTLIDTAGVRKRGKIHEEVEKFSVVKTLQAIKDANVVIFVMDAREGVV 292 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWD 325 DL ++ G A+V+ALNKWD Sbjct: 293 DHDLNLLGFALEAGRALVIALNKWD 317 >gi|168035467|ref|XP_001770231.1| predicted protein [Physcomitrella patens subsp. patens] gi|162678448|gb|EDQ64906.1| predicted protein [Physcomitrella patens subsp. patens] Length = 542 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 143/503 (28%), Positives = 247/503 (49%), Gaps = 70/503 (13%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 ++ IAIVG PNVGKS LFNR+ +A+V + G+TRDRLY +A + F +VDT G+ Sbjct: 34 LLPKIAIVGRPNVGKSALFNRIAGGDIAIVHDEAGVTRDRLYTRAFWSTHEFMLVDTGGV 93 Query: 61 --------------ADGKNCSIAKQMND------------QTELAINEAHLILFLIDSKA 94 A G ++AK + + Q A++ A I+F++D +A Sbjct: 94 LTIPGDGSDAVAVTAPGGEEAVAKAIKEAYDAGLPAMIEKQAGAAVSSADSIIFVVDGQA 153 Query: 95 GITPYDHAITSFLRKK--NIPIIIVSNKMDTRI-AQRNFYEIYSLDFKEIVEISAEHDLG 151 G+T D I ++LRKK N I + NK ++ Q E ++L F V +SA G Sbjct: 154 GLTAADIDIANWLRKKHSNKKITLAVNKCESPTKGQLQVAEFWTLGFTP-VPVSAISGTG 212 Query: 152 TSELHSVIFKIFKQKYPNHPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGR 211 T L ++ E + + KP+ IA+VG+ Sbjct: 213 TGNLLDLVC--------------------------EGLKPAEGELEEEEDKPMAIAIVGK 246 Query: 212 PNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKN-HPIEIFDTAGMRKPSRITES 270 PNVGKS+++N L+G R + SG TRD++ + N +++ DTAG+R+ + + Sbjct: 247 PNVGKSSILNALVGEERTIVSPVSGTTRDAIDTEFADDNGQTLKLIDTAGIRRRGAVASA 306 Query: 271 ---LEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMV 327 E +V ++ +++R + +++DA +QD R+ + + G A ++ +NKWD + Sbjct: 307 GSRAESLSVNRAFRAIRRSDVVALVIDALDCVTEQDFRLGERIAREGKACIIVVNKWDTI 366 Query: 328 SDKLNLL-----QDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRI 382 +K + +D+R + ++ L +Y + SG+ + + ++ V+ E + R+ Sbjct: 367 PNKDAMSTVWYDKDVRER-LRCLDWAPTVYCSASSGQRIKKILEMAVAAGEER---QRRL 422 Query: 383 TTSYLNSWLQKT-QLQNPPPTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYL 441 TT+ LN ++ L+ PP + R+ Y TQ PP+F+ F N PE Y+RY+ Sbjct: 423 TTATLNQVIRDAVALKQPPTGRGGKKGRIYYCTQAGVKPPTFVFFVNDANLFPEIYRRYM 482 Query: 442 INRLRINFSLSGIPIRMCFQSSK 464 +LR+N G P+R+ ++S + Sbjct: 483 EKQLRLNVGFPGTPVRLLWRSKQ 505 >gi|224283101|ref|ZP_03646423.1| bifunctional cytidylate kinase/GTP-binding protein [Bifidobacterium bifidum NCIMB 41171] gi|313140250|ref|ZP_07802443.1| bifunctional cytidylate kinase/GTP-binding protein [Bifidobacterium bifidum NCIMB 41171] gi|313132760|gb|EFR50377.1| bifunctional cytidylate kinase/GTP-binding protein [Bifidobacterium bifidum NCIMB 41171] Length = 711 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 132/459 (28%), Positives = 215/459 (46%), Gaps = 32/459 (6%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + +A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ A +G F +VDT G Sbjct: 274 VGVLAVVGRPNVGKSTLVNRILGRRAAVVEDTPGVTRDRVSYDAEWSGTEFKLVDTGGW- 332 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 + I + Q ++A+ + ++ ++D G+T D I LR P+ + NK+ Sbjct: 333 EADVEGIESAIASQAQIAVQLSDAVILVVDGHVGLTDTDERIVKMLRASGKPVTLAVNKV 392 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D ++ E + L E ISA H G +L ++ Sbjct: 393 DDGASEYLTAEFWKLGMGEPYGISAMHGRGVGDLLDAALDSLRK---------------- 436 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 ++ S + R+A+VGRPNVGKS+L+N+L G R + +G TRD Sbjct: 437 ---------ADKTSGFLTPTHLRRVALVGRPNVGKSSLLNQLAGEQRAVVNDLAGTTRDP 487 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 V + + DTAG+++ + + ++ ++ E +VL D++ P Sbjct: 488 VDETIDIDGEDWLFIDTAGIKRRLHKVSGADYYSSLRTQAAIERSELALVLFDSSQPISD 547 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVSD-KLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 QDL+++ + G AVVL NKWD++ D L+ L + + ++ +G Sbjct: 548 QDLKVMSQAVDAGRAVVLVFNKWDLMDDFGRQRLERLWKTEFNRVTWAQRVNLSAKTGWH 607 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 L D M + LE W RI T LN++L + Q +P P + R+ + TQ + P Sbjct: 608 TNRLADAMRNALES---WDKRIPTGRLNAFLGQIQAAHPHPLRGGKQPRILFATQASTRP 664 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 P F+IF T + Y+R+L LR F G PI++ Sbjct: 665 PRFVIFAT--GFLEHGYRRFLERSLREEFGFEGTPIQIS 701 >gi|56751772|ref|YP_172473.1| GTP-binding protein EngA [Synechococcus elongatus PCC 6301] gi|81301149|ref|YP_401357.1| GTP-binding protein EngA [Synechococcus elongatus PCC 7942] gi|81820595|sp|Q5N167|DER_SYNP6 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|123556312|sp|Q31KP9|DER_SYNE7 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|56686731|dbj|BAD79953.1| GTP-binding protein engA [Synechococcus elongatus PCC 6301] gi|81170030|gb|ABB58370.1| Small GTP-binding protein domain [Synechococcus elongatus PCC 7942] Length = 453 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 138/470 (29%), Positives = 234/470 (49%), Gaps = 34/470 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKSTL NRL + A+V + PG+TRDR Y +A F +VDT G+ Sbjct: 6 VAILGRPNVGKSTLVNRLAGSREAIVHDEPGVTRDRTYQEAFWCDRDFTVVDTGGLVFDD 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM--- 121 + + +Q ELA+ EA L + ++D +AG+T D+ I +LR +N PI++ NK Sbjct: 66 DTEFLPLIREQAELALAEAALAVLVVDGQAGLTAADNEIADWLRHQNRPIVVAVNKCESP 125 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D AQ E +SL F E + IS+ H GT EL + ++ Sbjct: 126 DKGAAQ--AAEFWSLGFGEPLPISSIHGSGTGELLDRVLELL------------------ 165 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 P + + ++ + +A+VGRPNVGKS+L+N LG R + +G TRD+ Sbjct: 166 ---PPADEAAGDETEIG-------VAIVGRPNVGKSSLLNSFLGEQRAIVSPIAGTTRDA 215 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 + + + DTAG+R+ + E + +S +++R + ++++D Sbjct: 216 IDTVIERNDQRYRLVDTAGIRRKRGVDYGPEFFGINRSFKAIRRADVCLLVIDVLDGVTD 275 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTG 361 QD ++ + G A V+ +NKWD + + ++ + L + + +S TG Sbjct: 276 QDQKLAGRIEEDGRACVIVVNKWDAHEKDSSTIYEVERQLRDRLYFLDWAPMIFVSALTG 335 Query: 362 EGLDDLMVSVLEINKLWKTRITTSYLNSWLQKT-QLQNPPPTIFNRYNRLKYITQIQSSP 420 + ++ ++ V + + + R+ TS +N L + PP T R R+ Y TQ+ + P Sbjct: 336 QRVEKILDQVNTVVEQHRRRVGTSVINEVLGDAIAWRTPPTTRQGRQGRIYYGTQVTTQP 395 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 PSF +F P ESY+RY+ + R + SG PIR+ ++ K+ +++ Sbjct: 396 PSFTLFVNDPKLFGESYRRYIERQFRESLGFSGTPIRLFWRGKKSRELER 445 >gi|310287469|ref|YP_003938727.1| GTP-binding protein [Bifidobacterium bifidum S17] gi|309251405|gb|ADO53153.1| GTP-binding protein [Bifidobacterium bifidum S17] Length = 711 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 132/459 (28%), Positives = 215/459 (46%), Gaps = 32/459 (6%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + +A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ A +G F +VDT G Sbjct: 274 VGVLAVVGRPNVGKSTLVNRILGRRAAVVEDTPGVTRDRVSYDAEWSGTEFKLVDTGGW- 332 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 + I + Q ++A+ + ++ ++D G+T D I LR P+ + NK+ Sbjct: 333 EADVEGIESAIASQAQIAVQLSDAVILVVDGHVGLTDTDERIVKMLRASGKPVTLAVNKV 392 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D ++ E + L E ISA H G +L ++ Sbjct: 393 DDGASEYLTAEFWKLGMGEPYGISAMHGRGVGDLLDAALDSLRK---------------- 436 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 ++ S + R+A+VGRPNVGKS+L+N+L G R + +G TRD Sbjct: 437 ---------ADKTSGFLTPTHLRRVALVGRPNVGKSSLLNQLAGEQRAVVNDLAGTTRDP 487 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 V + + DTAG+++ + + ++ ++ E +VL D++ P Sbjct: 488 VDETIDIDGEDWLFIDTAGIKRRLHKVSGADYYSSLRTQAAIERSELALVLFDSSQPISD 547 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVSD-KLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 QDL+++ + G AVVL NKWD++ D L+ L + + ++ +G Sbjct: 548 QDLKVMSQAVDAGRAVVLVFNKWDLMDDFGRQRLERLWKTEFNRVTWAQRVNLSAKTGWH 607 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 L D M + LE W RI T LN++L + Q +P P + R+ + TQ + P Sbjct: 608 TNRLADAMRNALES---WDKRIPTGRLNAFLGQIQAAHPHPLRGGKQPRILFATQASTRP 664 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 P F+IF T + Y+R+L LR F G PI++ Sbjct: 665 PRFVIFAT--GFLEHGYRRFLERSLREEFGFEGTPIQIS 701 >gi|294155882|ref|YP_003560266.1| GTP-binding protein [Mycoplasma crocodyli MP145] gi|291600022|gb|ADE19518.1| GTP-binding protein [Mycoplasma crocodyli MP145] Length = 434 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 138/463 (29%), Positives = 240/463 (51%), Gaps = 43/463 (9%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAI+G PNVGKST FNRL+ KK+++V + PG+TRDRLY G + ++DT GI + + Sbjct: 5 IAIIGKPNVGKSTFFNRLIGKKISIVYDQPGVTRDRLYENIEWCGRVIKMIDTGGI-EIE 63 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N +Q+ Q ++AI+EA +I+F+ D + IT D I + LRK N II V+NK+++ Sbjct: 64 NKPFQEQIQIQAKIAIDEADVIIFIFDGTSEITNDDLFIMNILRKSNKQIIAVANKLESN 123 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 Q Y Y L ++I ISA H G E+ K L+ + + E Sbjct: 124 --QDFDYSWYKLGVEKIYAISALHGEGVGEVLDECVK---------HLDFTDKQEDEE-- 170 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 +++++G+PN GKS+L+N L NR + +G TRDSV Sbjct: 171 -------------------FKLSIIGKPNAGKSSLLNNLAKENRSIVSEIAGTTRDSVKS 211 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + I DTAG+ + SR+ ES++ + ++M S+ + +++++DAT D Sbjct: 212 TVQINGQKYNIIDTAGIMRKSRLVESVDHYALMRAMNSLNEADLSLIIVDATSDISHFDS 271 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLL----QDLRTKAIKNLPQIGDIYINTISGRT 360 RI+ +++ +NKWD+V + N + ++LR K +P + ++ IS + Sbjct: 272 RIIGYALENQKPIIVVINKWDLVEKETNTMAEYEKNLRFK-FHFVPWVPFVF---ISAKF 327 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNP-PPTIFNRYNRLKYITQIQSS 419 + ++ L+ ++ ++ I + L+ ++ +TQ+ P P R N + ++ + Sbjct: 328 NQRIEKLIKTIEQVRTNLNRDIKPALLSKFIMETQMIQPAAPYNGGRLN-IYFVRKTLDK 386 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 P+F+ + I SY+R+L N++R F +G PIR+ F++ Sbjct: 387 IPTFVFYVNNKKFIHFSYERHLENQIRSTFDFTGCPIRLQFKN 429 Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 44/127 (34%), Positives = 70/127 (55%), Gaps = 12/127 (9%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI-- 60 + ++I+G PN GKS+L N L K+ ++V G TRD + ING +NI+DTAGI Sbjct: 171 FKLSIIGKPNAGKSSLLNNLAKENRSIVSEIAGTTRDSVKSTVQINGQKYNIIDTAGIMR 230 Query: 61 -----ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPII 115 + ++ + MN ++NEA L L ++D+ + I+ +D I + + PII Sbjct: 231 KSRLVESVDHYALMRAMN-----SLNEADLSLIIVDATSDISHFDSRIIGYALENQKPII 285 Query: 116 IVSNKMD 122 +V NK D Sbjct: 286 VVINKWD 292 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 79/169 (46%), Gaps = 24/169 (14%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP 264 +IA++G+PNVGKST NRL+G + Q G+TRD + + W I++ DT G+ Sbjct: 4 KIAIIGKPNVGKSTFFNRLIGKKISIVYDQPGVTRDRLYENIEWCGRVIKMIDTGGI--- 60 Query: 265 SRITESLEQKTVKKSMQ-----SVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 +E K ++ +Q ++ + I + D T DL I++ + + ++ Sbjct: 61 -----EIENKPFQEQIQIQAKIAIDEADVIIFIFDGTSEITNDDLFIMNILRKSNKQII- 114 Query: 320 ALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLM 368 V++KL QD K +G I IS GEG+ +++ Sbjct: 115 ------AVANKLESNQDFDYSWYK----LGVEKIYAISALHGEGVGEVL 153 >gi|225620645|ref|YP_002721903.1| putative GTP-binding protein [Brachyspira hyodysenteriae WA1] gi|225215465|gb|ACN84199.1| putative GTP-binding protein [Brachyspira hyodysenteriae WA1] Length = 501 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 137/493 (27%), Positives = 236/493 (47%), Gaps = 39/493 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAI+G PNVGKSTLFNR ++ ++V G+TRD + I+ + FN+ DT G+ D Sbjct: 4 IAILGRPNVGKSTLFNRFAGRRKSIVDPMAGVTRDISIAKTYIDDIEFNVFDTGGLLDVS 63 Query: 65 NCSIAKQMNDQT-ELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + ++ +++ ++ + A+ ++ ++LFL+D+ P D + +RK PII+V NK+D Sbjct: 64 DDTLNEKVREKALKTALEDSDILLFLVDAHQS-HPDDRHFINIIRKSGKPIILVINKVDA 122 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEM--------- 174 E YSL K++ ISAEH+ G +L I ++ ++ + E Sbjct: 123 DSHNNLVSEFYSLGIKDVSIISAEHNNGIDDLREKILEVLERNGFDLEAEREISKNNNSN 182 Query: 175 ---------IEN-----------------NKRNEESPKENITSEGKSSVKNISKPLRIAV 208 IEN ++ N + KE K + IA+ Sbjct: 183 NDEDNNTIEIENIDEDFEEEYYDDDLDEEDEENYNNKKEKSKQYRLDEYIAQKKTINIAI 242 Query: 209 VGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRIT 268 VG+PN GKSTL+N L+G +R + + +G TRD++ ++N+K I + DTAG+RK + Sbjct: 243 VGKPNAGKSTLLNTLIGKDRSIVSNIAGTTRDAIDETFNFKGDDICLVDTAGIRKKKNVN 302 Query: 269 ESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVS 328 +E +V ++++++ + I++LD QD I + + +V+A NKWD + Sbjct: 303 TDVEYYSVNRAIKAIEASDVCILMLDVFEGLTDQDKTIANLIIERRKGIVIAANKWD-IR 361 Query: 329 DKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLN 388 +K D + P + + + + L+ + + K R T L Sbjct: 362 EKGTTWNDYESYMKDAFPVLNYAFYARVCANRKNDAEKLLSLAVRVAKTRMQRFETHALT 421 Query: 389 SWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRIN 448 + + + N + ++ Y+ Q +PP+F +FC P+K+ YKRYL NR R Sbjct: 422 ETMVRATREYSISAGGNPF-KIFYVVQTGVNPPAFAVFCNHPHKLNSHYKRYLENRFREM 480 Query: 449 FSLSGIPIRMCFQ 461 F G PI + F+ Sbjct: 481 FDFRGTPIILNFR 493 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 51/173 (29%), Positives = 92/173 (53%), Gaps = 15/173 (8%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNH-PIEIFDTAGMR 262 + IA++GRPNVGKSTL NR G + + +G+TRD +SI+ + + +FDT G+ Sbjct: 2 INIAILGRPNVGKSTLFNRFAGRRKSIVDPMAGVTRD-ISIAKTYIDDIEFNVFDTGGLL 60 Query: 263 KPSRITESLEQKTVKKSMQ-SVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLAL 321 S ++L +K +K+++ ++ + + L+DA D ++ + +G ++L + Sbjct: 61 DVS--DDTLNEKVREKALKTALEDSDILLFLVDAHQS-HPDDRHFINIIRKSGKPIILVI 117 Query: 322 NKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEI 374 NK D S NL+ + + IK+ ++ IS G+DDL +LE+ Sbjct: 118 NKVDADSHN-NLVSEFYSLGIKD--------VSIISAEHNNGIDDLREKILEV 161 >gi|311064384|ref|YP_003971109.1| GTP-binding protein [Bifidobacterium bifidum PRL2010] gi|310866703|gb|ADP36072.1| GTP-binding protein [Bifidobacterium bifidum PRL2010] Length = 711 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 132/459 (28%), Positives = 215/459 (46%), Gaps = 32/459 (6%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + +A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ A +G F +VDT G Sbjct: 274 VGVLAVVGRPNVGKSTLVNRILGRRAAVVEDTPGVTRDRVSYDAEWSGTEFKLVDTGGW- 332 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 + I + Q ++A+ + ++ ++D G+T D I LR P+ + NK+ Sbjct: 333 EADVEGIESAIASQAQIAVQLSDAVILVVDGHVGLTDTDERIVKMLRASGKPVTLAVNKV 392 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D ++ E + L E ISA H G +L ++ Sbjct: 393 DDGASEYLTAEFWKLGMGEPYGISAMHGRGVGDLLDAALDSLRK---------------- 436 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 ++ S + R+A+VGRPNVGKS+L+N+L G R + +G TRD Sbjct: 437 ---------ADKTSGFLTPTHLRRVALVGRPNVGKSSLLNQLAGEQRAVVNDLAGTTRDP 487 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 V + + DTAG+++ + + ++ ++ E +VL D++ P Sbjct: 488 VDETIDIDGEDWLFIDTAGIKRRLHKVSGADYYSSLRTQAAIERSELALVLFDSSQPISD 547 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVSD-KLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 QDL+++ + G AVVL NKWD++ D L+ L + + ++ +G Sbjct: 548 QDLKVMSQAVDAGRAVVLVFNKWDLMDDFGRQRLERLWKTEFNRVTWAQRVNLSAKTGWH 607 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 L D M + LE W RI T LN++L + Q +P P + R+ + TQ + P Sbjct: 608 TNRLADAMRNALES---WDKRIPTGRLNAFLGQIQAAHPHPLRGGKQPRILFATQASTRP 664 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 P F+IF T + Y+R+L LR F G PI++ Sbjct: 665 PRFVIFAT--GFLEHGYRRFLERSLREEFGFEGTPIQIS 701 >gi|168703924|ref|ZP_02736201.1| probable GTP-binding protein [Gemmata obscuriglobus UQM 2246] Length = 495 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 127/458 (27%), Positives = 224/458 (48%), Gaps = 28/458 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKS+LFN L +++++V G+TRDR+ G +++++DT GI Sbjct: 6 VAIVGRPNVGKSSLFNWLAGRRISIVDPTAGVTRDRVSTVVEHGGRVWDLMDTGGIGIVD 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + Q + AI A +++F++D + G+ P D + + LR N P+++V+NK DT Sbjct: 66 VDDLTADVERQIQFAIESAAVVVFMVDVREGVVPLDEDVAARLRAINKPVVLVANKADTA 125 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 E L + E + +SA+ LG EL I Q P+ E + Sbjct: 126 KLGEQAGEFNRLGYGEPLCVSADQKLGKDELFEA---ILAQLPPDT----------GEVA 172 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P+E L +A+VGR N GKST IN L G R++ G TRDSV + Sbjct: 173 PEEPA--------------LMLAIVGRRNAGKSTFINSLAGGERVIVSEIPGTTRDSVDV 218 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 DTAG+RK +++ ++E + ++ +SVR + + DA + D Sbjct: 219 RIERDGKSYVAIDTAGVRKTAKMGTNIEFYSNHRAQRSVRRADVVMHFFDARHRVSRVDK 278 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 ++ + V + +NKWD+V + + +++ K P + + I I+ + G+ + Sbjct: 279 QLAEYVVEENKPAIFVVNKWDLVKEGMT-TEEMAEYMRKMFPMLDHVPIAFITAKDGKNV 337 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 ++ ++++K R+ T LN ++ +PPP ++ ++ Y TQI +PP+ + Sbjct: 338 LRVLQLAVQLHKQAAVRVGTGDLNRVIRAAMEASPPPMAGSKTPKVFYATQIGINPPTIV 397 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 +F P ++Y RYL LR F + I++ ++ Sbjct: 398 LFTNGPELFEQTYVRYLTKTLRDTFPFPEVAIKVVLRA 435 >gi|171742925|ref|ZP_02918732.1| hypothetical protein BIFDEN_02042 [Bifidobacterium dentium ATCC 27678] gi|283456054|ref|YP_003360618.1| bifunctional cytidylate kinase/GTP-binding protein [Bifidobacterium dentium Bd1] gi|171278539|gb|EDT46200.1| hypothetical protein BIFDEN_02042 [Bifidobacterium dentium ATCC 27678] gi|283102688|gb|ADB09794.1| Bifunctional cytidylate kinase/GTP-binding protein [Bifidobacterium dentium Bd1] Length = 709 Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 136/459 (29%), Positives = 215/459 (46%), Gaps = 32/459 (6%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + +A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ A G F +VDT G Sbjct: 272 VGVLAVVGRPNVGKSTLVNRILGRRAAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGW- 330 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 + I + Q ++A+ A ++ ++D + G+T D I LR P+ + NK+ Sbjct: 331 EADVEGIESAIASQAQMAVQLADAVVLVVDGQVGLTSTDERIVKMLRASGKPVTLAVNKV 390 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D R ++ E + + E ISA H G EL V LE ++ K+ Sbjct: 391 DDRESEYLTAEFWKMGMGEPYGISAMHGRGIGELLDV------------ALESLKKAKKT 438 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 S S R+A+VGRPNVGKS+L+N+L R + +G TRD Sbjct: 439 -------------SGFLTPSHLRRVALVGRPNVGKSSLLNQLAHEERSVVNDLAGTTRDP 485 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 V DTAG+++ E + ++ ++ E +VL DA+ P Sbjct: 486 VDEVVTVDGEDWLFIDTAGIKRRLHKLSGAEYFSSLRTQAAIERSELALVLFDASQPISD 545 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVSD-KLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 QDL+++ + G A+VL NKWD++ + ++ L + + ++ +G Sbjct: 546 QDLKVMSQAVDAGRAIVLVFNKWDLMDEFDRQRMERLWKTEFDRVTWAQRVNLSAKTGWH 605 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 L + M LE W RI T LN++L K Q +P P + R+ + TQ + P Sbjct: 606 TNRLANAMRGALES---WDKRIPTGKLNAFLGKIQAAHPHPLRGGKQPRILFATQASTRP 662 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 P F+IF T + Y+RY+ LR F G P+++ Sbjct: 663 PRFVIFAT--GFLEHGYRRYIERCLREEFGFDGSPVQIS 699 >gi|296122493|ref|YP_003630271.1| small GTP-binding protein [Planctomyces limnophilus DSM 3776] gi|296014833|gb|ADG68072.1| small GTP-binding protein [Planctomyces limnophilus DSM 3776] Length = 496 Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 134/463 (28%), Positives = 226/463 (48%), Gaps = 23/463 (4%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 I +AIVG PNVGKS++ N L +K+++VV G+TRDR+ F +VDT GI Sbjct: 3 IPKVAIVGRPNVGKSSILNWLAQKRISVVDPTAGVTRDRVMYLMHEGDRYFELVDTGGIG 62 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 ++ +++ Q + I EA LILF++D AG+T D ++ LR + ++V NK Sbjct: 63 IVDVDDLSNEIDYQINVGIQEADLILFVVDGSAGLTALDLEVSRRLRPISTRKLVVVNKC 122 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D+ Y+L IV S + + ++L + I LE + + + Sbjct: 123 DSPKLDLELGPFYALADGPIVVTSVKGNRNRNDLMAAI------------LENLPDANAD 170 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 E+ E T+E + L++A+VGR NVGKST +N L R++ G TRDS Sbjct: 171 EQQDGEQDTAEPE---------LKLAIVGRRNVGKSTFVNSLAETERMIVSEIPGTTRDS 221 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 V + + DT G+RK + +E + ++ +S+R ++ D T P + Sbjct: 222 VDVRFELDGKSFVAIDTPGVRKRKSLANDIEWYGLARAKRSIRRANVVLMFFDCTQPISR 281 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTG 361 D ++V ++ + +NKWD+ D+ ++ ++N + + + I+G TG Sbjct: 282 VDKQLVHEIYEYHKPCIFVVNKWDLHGDQ--EMEAWNEYLLQNFASMRHVPLAFITGMTG 339 Query: 362 EGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 + + L+ I K RI T LN ++K PPP NR +L Y TQ+ + PP Sbjct: 340 KNVKKLINLAQSIFKQALMRIGTGELNRLVKKAVKNWPPPMRQNRNVKLYYATQVAAEPP 399 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 + ++ C N + +S+KRYL+ R +PI++ F+S + Sbjct: 400 TIVLKCNDANLLDDSWKRYLLGVFREELPFKEVPIKLYFRSRE 442 >gi|189218193|ref|YP_001938835.1| GTP-binding protein EngA [Methylacidiphilum infernorum V4] gi|189185051|gb|ACD82236.1| GTP-binding protein EngA [Methylacidiphilum infernorum V4] Length = 433 Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 129/438 (29%), Positives = 215/438 (49%), Gaps = 38/438 (8%) Query: 29 VVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNCSIAKQMNDQTELAINEAHLILF 88 +V + PG+TRDR+ G +VDT G+ +AK + DQ +A+ EAH ILF Sbjct: 1 MVYDQPGVTRDRIVCCIKKEGKEIVLVDTGGLVFDCQTDLAKSLFDQISMAVEEAHHILF 60 Query: 89 LIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQRNFYEIYSLDFKEIVEISAEH 148 ++D + G+ P D I FLR+K+ + +V NK+D + E +L F+EI +SA H Sbjct: 61 VVDGRTGLLPLDKQIAKFLREKHKAVTVVVNKLDHPGMEHFCAEFANLGFEEIFAVSAAH 120 Query: 149 DLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAV 208 +LG ++L IF + ++ N P+ + RIAV Sbjct: 121 NLGINQLLEKIFSLGAEEREN-PI---------------------------FAPSTRIAV 152 Query: 209 VGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRIT 268 +G+PN GKS+LIN L+G +RL+ + G T D+V + P DTAG++K +++ Sbjct: 153 IGQPNAGKSSLINSLIGESRLVVHEEPGTTHDAVEVGIEVCGVPFTFIDTAGLKKKNKLQ 212 Query: 269 ESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVS 328 E LE K +++ S+ ++D QD +I + ++ LNK D++ Sbjct: 213 EGLEIKVSGRTVHSINRSHLVWFIIDGQKGITLQDKKIGGLIQKAFKPCMVILNKIDLLE 272 Query: 329 DKLNLLQDLRTKAI---KNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTS 385 D+LNL + + + + LP + + +S L+ ++L +++ K RI T Sbjct: 273 DRLNLKEGNKKGMLYVQEQLPFLSYAPVVVVSAEKKWNFKTLLSTLLRVDQERKKRIPTH 332 Query: 386 YLNSWLQKTQLQNPPPTIFNRYNRLKYITQI-------QSSPPSFLIFCTFPNKIPESYK 438 L + Q+T Q PPP + + ++ Y TQI S P+F++F PN I E+Y+ Sbjct: 333 RLTQFFQETLNQYPPPQVQGKRLKIYYATQIYDKEGSGGSPCPTFILFVNNPNCIKETYQ 392 Query: 439 RYLINRLRINFSLSGIPI 456 ++L + R F G P+ Sbjct: 393 KFLEKQFRQAFCFRGCPL 410 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 58/200 (29%), Positives = 95/200 (47%), Gaps = 17/200 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA++G PN GKS+L N L+ + VV PG T D + + GV F +DTAG+ Sbjct: 150 IAVIGQPNAGKSSLINSLIGESRLVVHEEPGTTHDAVEVGIEVCGVPFTFIDTAGLKKKN 209 Query: 65 NC--SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + +++ +T +IN +HL+ F+ID + GIT D I ++K P +++ NK+D Sbjct: 210 KLQEGLEIKVSGRTVHSINRSHLVWFIIDGQKGITLQDKKIGGLIQKAFKPCMVILNKID 269 Query: 123 TRIAQRNFYE------IYS------LDFKEIVEISAEHDLGTSELHSVIFKI---FKQKY 167 + N E +Y L + +V +SAE L S + ++ K++ Sbjct: 270 LLEDRLNLKEGNKKGMLYVQEQLPFLSYAPVVVVSAEKKWNFKTLLSTLLRVDQERKKRI 329 Query: 168 PNHPLEMIENNKRNEESPKE 187 P H L N+ P + Sbjct: 330 PTHRLTQFFQETLNQYPPPQ 349 >gi|283783291|ref|YP_003374045.1| ribosome-associated GTPase EngA [Gardnerella vaginalis 409-05] gi|283441128|gb|ADB13594.1| ribosome-associated GTPase EngA [Gardnerella vaginalis 409-05] Length = 734 Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 136/465 (29%), Positives = 219/465 (47%), Gaps = 44/465 (9%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI- 60 + IAI+G PNVGKSTL NR++ ++AVV + PG+TRDR+ A G F +VDT G Sbjct: 297 VGVIAIIGRPNVGKSTLVNRILGHRVAVVEDTPGVTRDRVSYDAEWAGTNFKLVDTGGWE 356 Query: 61 --ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVS 118 +G + SIA+ Q ++A+ + ++FL+D + G+T D I S LR PI + Sbjct: 357 ADVEGIDSSIAQ----QAQIAVRLSDAVIFLVDGQVGLTATDERIVSMLRAAGKPITLAV 412 Query: 119 NKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 NK+D ++ E + L E ISA H G +L K+ Sbjct: 413 NKVDDARSEYLTAEFWKLGMGEPYGISAMHGRGVGDLLDAALNSLKKANKTSGF------ 466 Query: 179 KRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 +T EG R+A+VGRPNVGKS+L+N L R + +G T Sbjct: 467 ----------LTPEGLR---------RVALVGRPNVGKSSLLNHLAHEERSVVNDLAGTT 507 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RD V DTAG+++ E + ++ ++ E ++L D++ P Sbjct: 508 RDPVDEVVRVDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALILFDSSQP 567 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSD----KLNLLQDLRTKAIKNLPQIGDIYIN 354 +QDL+++ + G A+VL NKWD++ + ++ L + + ++ Sbjct: 568 IAEQDLKVMSQAVDAGRAIVLVFNKWDLMDEFSRQRMERLWKTEFERVTWAERV------ 621 Query: 355 TISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYIT 414 +S +TG + L ++ W RI T LN++L + Q +P P + R+ + T Sbjct: 622 NLSAKTGWHTNRLARAMRTALDSWDKRIPTGKLNAFLGRIQSAHPHPLRGGKQARILFAT 681 Query: 415 QIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 Q + PP F+IF T + Y+R++ LR F G PI++ Sbjct: 682 QASTRPPRFVIFTT--GFLEHGYRRFIERSLREEFGFEGTPIQIS 724 >gi|306822736|ref|ZP_07456114.1| ribosome-associated GTPase EngA [Bifidobacterium dentium ATCC 27679] gi|309800900|ref|ZP_07695032.1| ribosome biogenesis GTPase Der [Bifidobacterium dentium JCVIHMP022] gi|304554281|gb|EFM42190.1| ribosome-associated GTPase EngA [Bifidobacterium dentium ATCC 27679] gi|308222436|gb|EFO78716.1| ribosome biogenesis GTPase Der [Bifidobacterium dentium JCVIHMP022] Length = 709 Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 136/460 (29%), Positives = 219/460 (47%), Gaps = 34/460 (7%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + +A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ A G F +VDT G Sbjct: 272 VGVLAVVGRPNVGKSTLVNRILGRRAAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGW- 330 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 + I + Q ++A+ A ++ ++D + G+T D I LR P+ + NK+ Sbjct: 331 EADVEGIESAIASQAQMAVQLADAVVLVVDGQVGLTSTDERIVKMLRASGKPVTLAVNKV 390 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D R ++ E + + E ISA H G EL V LE ++ K+ Sbjct: 391 DDRESEYLTAEFWKMGLGEPYGISAMHGRGIGELLDV------------ALESLKKAKKT 438 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 S S R+A+VGRPNVGKS+L+N+L R + +G TRD Sbjct: 439 -------------SGFLTPSHLRRVALVGRPNVGKSSLLNQLAHEERSVVNDLAGTTRDP 485 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 V DTAG+++ E + ++ ++ E +VL DA+ P Sbjct: 486 VDEVVTVDGEDWLFIDTAGIKRRLHKLSGAEYFSSLRTQAAIERSELALVLFDASQPISD 545 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVS--DKLNLLQDLRTKAIKNLPQIGDIYINTISGR 359 QDL+++ + G A+VL NKWD++ D+ + + +T+ ++ +S + Sbjct: 546 QDLKVMSQAVDAGRAIVLVFNKWDLMDEFDRQRMERLWKTE----FDRVTWAQRVNLSAK 601 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 TG + L ++ + W RI T LN++L K Q +P P + R+ + TQ + Sbjct: 602 TGWHTNRLANAMRGALQSWDKRIPTGKLNAFLGKIQAAHPHPLRGGKQPRILFATQASTR 661 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 PP F+IF T + Y+RY+ LR F G P+++ Sbjct: 662 PPRFVIFAT--GFLEHGYRRYIERCLREEFGFDGSPVQIS 699 >gi|297243478|ref|ZP_06927410.1| GTPase [Gardnerella vaginalis AMD] gi|296888523|gb|EFH27263.1| GTPase [Gardnerella vaginalis AMD] Length = 734 Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 136/465 (29%), Positives = 219/465 (47%), Gaps = 44/465 (9%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI- 60 + IAI+G PNVGKSTL NR++ ++AVV + PG+TRDR+ A G F +VDT G Sbjct: 297 VGVIAIIGRPNVGKSTLVNRILGHRVAVVEDTPGVTRDRVSYDAEWAGTNFKLVDTGGWE 356 Query: 61 --ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVS 118 +G + SIA+ Q ++A+ + ++FL+D + G+T D I S LR PI + Sbjct: 357 ADVEGIDSSIAQ----QAQVAVRLSDAVIFLVDGQVGLTATDERIVSMLRAAGKPITLAV 412 Query: 119 NKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 NK+D ++ E + L E ISA H G +L K+ Sbjct: 413 NKVDDARSEYLTAEFWKLGMGEPYGISAMHGRGVGDLLDAALNSLKKANKTSGF------ 466 Query: 179 KRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 +T EG R+A+VGRPNVGKS+L+N L R + +G T Sbjct: 467 ----------LTPEGLR---------RVALVGRPNVGKSSLLNHLAHEERSVVNDLAGTT 507 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RD V DTAG+++ E + ++ ++ E ++L D++ P Sbjct: 508 RDPVDEVVRVDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALILFDSSQP 567 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSD----KLNLLQDLRTKAIKNLPQIGDIYIN 354 +QDL+++ + G A+VL NKWD++ + ++ L + + ++ Sbjct: 568 IAEQDLKVMSQAVDAGRAIVLVFNKWDLMDEFSRQRMERLWKTEFERVTWAERV------ 621 Query: 355 TISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYIT 414 +S +TG + L ++ W RI T LN++L + Q +P P + R+ + T Sbjct: 622 NLSAKTGWHTNRLARAMRTALDSWDKRIPTGKLNAFLGRIQSAHPHPLRGGKQARILFAT 681 Query: 415 QIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 Q + PP F+IF T + Y+R++ LR F G PI++ Sbjct: 682 QASTRPPRFVIFTT--GFLEHGYRRFIERSLREEFGFEGTPIQIS 724 >gi|212715828|ref|ZP_03323956.1| hypothetical protein BIFCAT_00729 [Bifidobacterium catenulatum DSM 16992] gi|212661195|gb|EEB21770.1| hypothetical protein BIFCAT_00729 [Bifidobacterium catenulatum DSM 16992] Length = 709 Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 134/462 (29%), Positives = 214/462 (46%), Gaps = 38/462 (8%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + +A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ A G F +VDT G Sbjct: 272 VGVLAVVGRPNVGKSTLVNRILGRRAAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGW- 330 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 + I + Q ++A+ A ++ ++D + G+T D I LR P+ + NK+ Sbjct: 331 EADVEGIESAIASQAQIAVQLADAVVLVVDGQVGLTNTDERIVKMLRSSGKPVTLAVNKV 390 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D R ++ E + + E ISA H G EL + K+ Sbjct: 391 DDRESEYLTAEFWKMGLGEPYGISAMHGRGIGELLDAALESLKK---------------- 434 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 +E S S R+A+VGRPNVGKS+L+N+L R + +G TRD Sbjct: 435 ---------AEKTSGFLTPSHLRRVALVGRPNVGKSSLLNQLAHEERTVVNDLAGTTRDP 485 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 V DTAG+++ E + ++ ++ E +VL DA+ P Sbjct: 486 VDEVVTVDGEDWLFIDTAGIKRRLHKLSGAEYFSSLRTQAAIERSELALVLFDASQPISD 545 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVSD----KLNLLQDLRTKAIKNLPQIGDIYINTIS 357 QDL+++ + G +VL NKWD++ D ++ L + ++ +S Sbjct: 546 QDLKVMSQAVDAGRCIVLVFNKWDLMDDFDRQRMERLWKTEFDRVTWAQRV------NLS 599 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 +TG + L ++ + W RI T LN++L K Q +P P + R+ + TQ Sbjct: 600 AKTGWHTNRLARAMRGALESWDKRIPTGKLNAFLGKIQAAHPHPLRGGKQPRILFATQAS 659 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 + PP F+IF T + Y+RY+ LR F G PI++ Sbjct: 660 TRPPRFVIFAT--GFLEHGYRRYIERCLREEFGFEGSPIQIS 699 >gi|298252771|ref|ZP_06976565.1| GTPase [Gardnerella vaginalis 5-1] gi|297533135|gb|EFH72019.1| GTPase [Gardnerella vaginalis 5-1] Length = 734 Score = 206 bits (525), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 136/465 (29%), Positives = 219/465 (47%), Gaps = 44/465 (9%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI- 60 + IAI+G PNVGKSTL NR++ ++AVV + PG+TRDR+ A G F +VDT G Sbjct: 297 VGVIAIIGRPNVGKSTLVNRILGHRVAVVEDTPGVTRDRVSYDAEWAGTNFKLVDTGGWE 356 Query: 61 --ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVS 118 +G + SIA+ Q ++A+ + ++FL+D + G+T D I S LR PI + Sbjct: 357 ADVEGIDSSIAQ----QAQVAVRLSDAVIFLVDGQVGLTATDERIVSMLRAAGKPITLAV 412 Query: 119 NKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 NK+D ++ E + L E ISA H G +L K+ Sbjct: 413 NKVDDARSEYLTAEFWKLGMGEPYGISAMHGRGVGDLLDAALNSLKKANKTSGF------ 466 Query: 179 KRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 +T EG R+A+VGRPNVGKS+L+N L R + +G T Sbjct: 467 ----------LTPEGLR---------RVALVGRPNVGKSSLLNHLAHEERSVVNDLAGTT 507 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RD V DTAG+++ E + ++ ++ E ++L D++ P Sbjct: 508 RDPVDEVVRVDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALILFDSSQP 567 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSD----KLNLLQDLRTKAIKNLPQIGDIYIN 354 +QDL+++ + G A+VL NKWD++ + ++ L + + ++ Sbjct: 568 IAEQDLKVMSQAVDAGRAIVLVFNKWDLMDEFSRQRMERLWKTEFERVTWAERV------ 621 Query: 355 TISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYIT 414 +S +TG + L ++ W RI T LN++L + Q +P P + R+ + T Sbjct: 622 NLSAKTGWHTNRLARAMRTALDSWDKRIPTGKLNAFLGRIQSAHPHPLRGGKQARILFAT 681 Query: 415 QIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 Q + PP F+IF T + Y+R++ LR F G PI++ Sbjct: 682 QASTRPPRFVIFTT--GFLEHGYRRFIERSLREEFGFEGTPIQIS 724 >gi|308235717|ref|ZP_07666454.1| bifunctional cytidylate kinase/GTP-binding protein [Gardnerella vaginalis ATCC 14018] gi|311114732|ref|YP_003985953.1| ribosome-associated GTPase EngA [Gardnerella vaginalis ATCC 14019] gi|310946226|gb|ADP38930.1| ribosome-associated GTPase EngA [Gardnerella vaginalis ATCC 14019] Length = 734 Score = 206 bits (525), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 135/465 (29%), Positives = 219/465 (47%), Gaps = 44/465 (9%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI- 60 + IA++G PNVGKSTL NR++ ++AVV + PG+TRDR+ A G F +VDT G Sbjct: 297 VGVIAVIGRPNVGKSTLVNRILGHRVAVVEDTPGVTRDRVSYDAEWAGTNFKLVDTGGWE 356 Query: 61 --ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVS 118 +G + SIA+ Q ++A+ + ++FL+D + G+T D I S LR PI + Sbjct: 357 ADVEGIDSSIAQ----QAQVAVRLSDAVIFLVDGQVGLTATDERIVSMLRAAGKPITLAV 412 Query: 119 NKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 NK+D ++ E + L E ISA H G +L K+ Sbjct: 413 NKVDDARSEYLTAEFWKLGMGEPYGISAMHGRGVGDLLDAALNSLKKANKTSGF------ 466 Query: 179 KRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 +T EG R+A+VGRPNVGKS+L+N L R + +G T Sbjct: 467 ----------LTPEGLR---------RVALVGRPNVGKSSLLNHLAHEERSVVNDLAGTT 507 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RD V DTAG+++ E + ++ ++ E ++L D++ P Sbjct: 508 RDPVDEVVRVDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALILFDSSQP 567 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSD----KLNLLQDLRTKAIKNLPQIGDIYIN 354 +QDL+++ + G A+VL NKWD++ + ++ L + + ++ Sbjct: 568 IAEQDLKVMSQAVDAGRAIVLVFNKWDLMDEFSRQRMERLWKTEFERVTWAERV------ 621 Query: 355 TISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYIT 414 +S +TG + L ++ W RI T LN++L + Q +P P + R+ + T Sbjct: 622 NLSAKTGWHTNRLARAMRTALDSWDKRIPTGKLNAFLGRIQSAHPHPLRGGKQARILFAT 681 Query: 415 QIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 Q + PP F+IF T + Y+R++ LR F G PI++ Sbjct: 682 QASTRPPRFVIFAT--GFLEHGYRRFIERSLREEFGFEGTPIQIS 724 >gi|71892302|ref|YP_278036.1| GTP-binding protein EngA [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|71796408|gb|AAZ41159.1| putative GTP-binding protein [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 471 Score = 206 bits (525), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 152/485 (31%), Positives = 241/485 (49%), Gaps = 29/485 (5%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ I ++G NVGKSTLFN+L A++ N+PG+TRDR YG ++DT GI Sbjct: 1 MLPIITLIGQKNVGKSTLFNKLTHTHDALISNYPGLTRDRQYGYFQCKQFKSILIDTGGI 60 Query: 61 ADGKNCS-----IAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPII 115 K CS I + QT LA+ EA ++LF++D ++ T ++ I +FL+K I Sbjct: 61 --DKFCSTKTENIQSYVTYQTILAMQEADILLFVMDRQSVGTSINNDIFNFLKKIKKNIF 118 Query: 116 IVSNKMDT--RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLE 173 +V NK+D ++ S K I+ ISA H G L I + + Sbjct: 119 VVINKIDNIPHHIHTMIWDYCSFGIKNIIFISAIHGHGIDNLLEKISSLISKNI------ 172 Query: 174 MIENNKRNEESPKENITSEG--KSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLT 231 NNK E I +S ++ + +AVVGRPN GKST +N +LG R++T Sbjct: 173 FFSNNKIPESHINNTIYQNHIINTSFNKVNAAIAVAVVGRPNSGKSTFVNHILGETRMIT 232 Query: 232 GSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIV 291 S G TR+ + + + + DTAG++K RI EQ ++ K+ Q ++T + Sbjct: 233 CSTPGTTRNCIHMPIMYDKQKYILIDTAGVQKNKRIDNVAEQISILKTFQIIKTAHVLLF 292 Query: 292 LLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQ---- 347 + DA + QDL ++ + N G A+++ +NKWD++S DLR KNL + Sbjct: 293 IGDANLGISDQDLHLLQFILNYGKALIIVINKWDLIS------PDLRNTTKKNLYEKINF 346 Query: 348 IGDIYINTISGRTGEGLDDLMVSVLEINKL--WKTRITTSYLNSWLQKTQLQNPPPTIFN 405 I I+ IS G G+ L ++ N + I T+YL L + PPP + Sbjct: 347 INFTQIHFISALYGNGIKALFQAIKATNLCSRYTKTINTAYLIRTLHAAITKYPPPFLHG 406 Query: 406 RYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 + + KYI ++ P + +I T +K+P+ YKRYL +++G+ + + F+ + N Sbjct: 407 KRIKPKYIHIGKNEPLTLIIHGTHVSKLPDDYKRYLKKYFYRMLNITGVLLHIQFKDNIN 466 Query: 466 PYIKK 470 P+I K Sbjct: 467 PFINK 471 >gi|322434484|ref|YP_004216696.1| ribosome-associated GTPase EngA [Acidobacterium sp. MP5ACTX9] gi|321162211|gb|ADW67916.1| ribosome-associated GTPase EngA [Acidobacterium sp. MP5ACTX9] Length = 622 Score = 206 bits (524), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 138/472 (29%), Positives = 234/472 (49%), Gaps = 25/472 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+ G PNVGKSTLFNRL + ++VG+ PGITRDR+YG+ V +VDT G+ Sbjct: 142 IAVCGRPNVGKSTLFNRLTGSRRSIVGDEPGITRDRIYGEIEWQNVKARLVDTGGVVPDD 201 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I ++ Q ++A+ EA I+ ++D + + D + L K P + NKMD+ Sbjct: 202 EALIPSEIFRQAQVALQEADAIVMVVDGRTELASPDMELARLLMKGGKPTFLAVNKMDSE 261 Query: 125 ---IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 A NF L FK ++ ISAEH G +L +F + + +E + Sbjct: 262 SMYAAAENFRR---LGFKNVLPISAEHGSGIGDLLDEVFAVLPEPAEGLEIEEEPEFEPF 318 Query: 182 EESPKENITSE------GKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQS 235 +E + E ++ + S+ ++A++GRPNVGKSTL+N L +R + + Sbjct: 319 DEEIEAAEGEEPVRVRTQRTHGEYESRETKVAIIGRPNVGKSTLLNALTETDRAIVSPIA 378 Query: 236 GITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDA 295 G TRD+V K H DTAG+RK + E+ +V + + + + +++++DA Sbjct: 379 GTTRDAVDEIVEKKGHIFRFVDTAGIRKKGKTKMMAEKLSVIMARKHLEAADVSLLVIDA 438 Query: 296 TIPFEKQDLRIVDSVFNTGHAVVLALNKWDMV----------SDKLNLLQDLRTKAIKNL 345 D I +G +V++ +NKWD+V +D+ Q +R A+K L Sbjct: 439 QEGVTNIDANIGGYAHESGRSVIIVINKWDLVTTARTDGKPAADQKAYAQQVRD-ALKYL 497 Query: 346 PQIGDIYINTISGRTG-EGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIF 404 ++I+ G + ++ + V + + + R++T +N +L K Q Sbjct: 498 DYAPLLFISAGPETGGPKAIEQVFAKVELVARERRKRVSTGMMNKFLDKVDFQR-ASVPM 556 Query: 405 NRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 N+ ++ Y+TQ Q +PP+F++F K+ S++R+L N++R F G PI Sbjct: 557 NKRVKIYYMTQAQVAPPTFVLFTDRDIKMHFSFERFLANQIREAFGFIGSPI 608 >gi|300869581|ref|ZP_07114162.1| GTP-binding protein engA [Oscillatoria sp. PCC 6506] gi|300332449|emb|CBN59362.1| GTP-binding protein engA [Oscillatoria sp. PCC 6506] Length = 454 Score = 206 bits (524), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 128/462 (27%), Positives = 223/462 (48%), Gaps = 31/462 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKST+ NR + + ++V + PG+TRDR Y A F +VDT G+ Sbjct: 6 VAIIGRPNVGKSTIVNRFAESQDSIVHDQPGMTRDRTYKNAYWGDREFQVVDTGGLVFDD 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N + +Q A+ EA +F++D + G+T D AI +LR++ +P+++ NK ++ Sbjct: 66 NTEFLPLIREQAMAALAEASAAIFVVDGQIGLTGGDEAIAEWLRQQRVPVLLAVNKCESE 125 Query: 125 I-AQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + L E IS H GT EL E+I + E Sbjct: 126 TEGLTQAAQFWELGLGEPFPISGIHGNGTGELLD---------------ELISHLPAVGE 170 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 P+ T ++A+VGRPNVGKS+L+N LG R + SG TRD++ Sbjct: 171 LPEIEET--------------KVAIVGRPNVGKSSLLNAFLGETRAIVSPISGTTRDAID 216 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + DTAG+RK + E + ++ +++R + ++++DA QD Sbjct: 217 TVVERNGTTYRLIDTAGIRKKKNVEYGPEFFGINRAFKAIRRADVVLLVIDAVDGVTDQD 276 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 ++ D + G A V+ +NKWD + + D + L + + +S TG+ Sbjct: 277 QKLADRISEEGRACVIVVNKWDAIEKDSTTIYDYEKEVKTRLYFVDWAEMIFVSATTGQR 336 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQK-TQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 ++ ++ V + R+TT+ +N +++ T +PP T R ++ Y TQ+++ PP+ Sbjct: 337 VEKILELVDTAATAHQRRVTTAVINEVIEEATSWHSPPVTRQGRQGKIYYGTQVRAQPPT 396 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 +F P + E+Y+RY+ + R G P+R+ ++ K Sbjct: 397 IALFVNDPLRFNENYRRYIETQFRKQLGFIGTPMRLVWRGKK 438 >gi|226939618|ref|YP_002794691.1| GTP-binding protein engA [Laribacter hongkongensis HLHK9] gi|226714544|gb|ACO73682.1| GTP-binding protein engA [Laribacter hongkongensis HLHK9] Length = 415 Score = 206 bits (524), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 127/426 (29%), Positives = 209/426 (49%), Gaps = 31/426 (7%) Query: 45 AIINGVIFNIVDTAGIADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAIT 104 A + G + +VDT G + I +M QT A++EA ++FL+D++AG+TP D I Sbjct: 2 ARVGGKPYLVVDTGGFEPVVDSGIMHEMARQTLQAVDEADAVIFLVDARAGLTPQDKIIA 61 Query: 105 SFLRKKNIPIIIVSNKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFK 164 + LR+ P+ +V NK + E Y L E IS H G EL + F Sbjct: 62 NQLRQIGRPVFLVVNKAEGMSRAMVVAEFYELGLDEPWSISGAHGEGVRELMDEVLAPF- 120 Query: 165 QKYPNHPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLL 224 P E E R+ PK A++GRPNVGKSTL+N +L Sbjct: 121 ------PDESEEETSRH---PK-------------------FAIIGRPNVGKSTLVNAIL 152 Query: 225 GYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVR 284 G R++ G TRDS+ I + + I DTAG+R+ ++I ES+E+ +V K++Q++ Sbjct: 153 GEERVIAFDHPGTTRDSIYIDFEREGKTYTIIDTAGVRRRAKIDESIEKFSVVKTLQAIE 212 Query: 285 TCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKN 344 +++LDA + QD + G A+V+A+NKWD ++ + +++ + Sbjct: 213 DANVCVLVLDAALDVSDQDATLAGFALEAGRALVVAVNKWDDCDEEQRI--NIKRSIARK 270 Query: 345 LPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIF 404 L + + IS G+G+ DL S+ + ++ T L LQ + PP + Sbjct: 271 LHFLEFAKYHYISALKGQGVADLFKSIDQAYHAAMIKMPTPKLTRALQVAIERQAPPMMG 330 Query: 405 NRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 +++Y Q +PP ++ +K+P+SY RYL + R F L G P+R+ ++S+ Sbjct: 331 LIRPKMRYAHQGGMNPPVVVVHGNALDKLPDSYTRYLEHSFRRMFKLEGTPLRVQYKSTD 390 Query: 465 NPYIKK 470 NPY ++ Sbjct: 391 NPYAER 396 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 85/172 (49%), Gaps = 13/172 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 AI+G PNVGKSTL N ++ ++ + +HPG TRD +Y G + I+DTAG+ Sbjct: 134 FAIIGRPNVGKSTLVNAILGEERVIAFDHPGTTRDSIYIDFEREGKTYTIIDTAGVRRRA 193 Query: 65 --NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + SI K +T AI +A++ + ++D+ ++ D + F + +++ NK D Sbjct: 194 KIDESIEKFSVVKTLQAIEDANVCVLVLDAALDVSDQDATLAGFALEAGRALVVAVNKWD 253 Query: 123 T-------RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKY 167 I + +++ L+F + ISA G ++L FK Q Y Sbjct: 254 DCDEEQRINIKRSIARKLHFLEFAKYHYISALKGQGVADL----FKSIDQAY 301 >gi|224129530|ref|XP_002328739.1| predicted protein [Populus trichocarpa] gi|222839037|gb|EEE77388.1| predicted protein [Populus trichocarpa] Length = 560 Score = 206 bits (523), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 144/492 (29%), Positives = 252/492 (51%), Gaps = 43/492 (8%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPG--ITRDRLYGQAIINGVIFNIVDTA 58 ++ T+ IVG PNVGKS L+NRL++++ A+V N P +TRD G A + + F ++D+A Sbjct: 50 LLPTVIIVGRPNVGKSALYNRLIRRREALVYNTPDDHVTRDIREGIAKLGDLRFKVLDSA 109 Query: 59 GI-ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKK--NIPII 115 G+ + + SI ++ T + +FLID +AG+ P D + + RK I I Sbjct: 110 GLETEAASGSILQRTTSMTANVLARTQFAVFLIDVRAGLHPLDLDVGKWFRKHAPGIKPI 169 Query: 116 IVSNKMDTRIA-----QRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNH 170 + NK ++ E L F + + ISAE LG + LH + + + ++ Sbjct: 170 VAMNKSESLCDGVGSISDAADEARMLGFGDPIAISAETGLGMAALHDALQPLIE----DY 225 Query: 171 PLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLL 230 L+++ NN + + + V PL++A++GRPNVGKSTL+N LL R+L Sbjct: 226 MLQVLNNNCDQDNGYGPSHVDDVAGEVDESKLPLQLAIIGRPNVGKSTLLNTLLQEERVL 285 Query: 231 TGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTI 290 G + G+TRDSV + ++ I + DTAG + + + + +V +S +++ + Sbjct: 286 VGPEVGLTRDSVRTQFQYEGRTIYLVDTAGWLQRTGLEKGPSSLSVMQSRKNLMRAQVVA 345 Query: 291 VLLDATIPFEKQ------DLRIVDSVFNTGHAVVLALNKWDMVSDKLN-LLQDLRTKAI- 342 ++LDA + + ++ I G +V+ +NK D++ K N L D +A+ Sbjct: 346 LVLDAEEVVKARRSMTHAEVVIARRAVEEGRGLVVIVNKMDLLKGKRNSTLFDKVMEAVP 405 Query: 343 ----KNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQN 398 +PQI I + S G G +M V++ + W +R++TS LN WL+K Sbjct: 406 LEIQTVIPQITGIPVVFTSALEGRGRIAVMRQVIDTYEKWCSRLSTSRLNRWLRK----- 460 Query: 399 PPPTIFNRYN--------RLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFS 450 + +R++ ++KY TQ+++ PP+F+ F + ++ E+ R+L L+ +F Sbjct: 461 ----VMSRHSWKDQAAQPKIKYFTQVKARPPTFVAFTSGKTQLSETDLRFLTKSLKEDFD 516 Query: 451 LSGIPIRMCFQS 462 L GIPIR+ +S Sbjct: 517 LGGIPIRIMQRS 528 >gi|120404249|ref|YP_954078.1| GTP-binding protein EngA [Mycobacterium vanbaalenii PYR-1] gi|166225829|sp|A1TA72|DER_MYCVP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|119957067|gb|ABM14072.1| small GTP-binding protein [Mycobacterium vanbaalenii PYR-1] Length = 470 Score = 206 bits (523), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 143/459 (31%), Positives = 229/459 (49%), Gaps = 41/459 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA-DG 63 +A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ A +G F + DT G D Sbjct: 34 VAVVGRPNVGKSTLVNRILGRREAVVQDVPGVTRDRVSYDASWSGQRFMVQDTGGWEPDA 93 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 K + + + +Q +A+ A I+F++DS G T D A L++ P+ + +NK+D Sbjct: 94 KG--LQQLVAEQASVAMRTADAIIFVVDSVVGATAADEAAAKLLQRSGKPVFLAANKVDN 151 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + ++SL E ISA H G ++L + Sbjct: 152 ERGEADAAALWSLGLGEPHPISAMHGRGVADLLDAVV----------------------- 188 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 + + + + + P R+A+VG+PNVGKS+L+NRL G R + +G T D V Sbjct: 189 ---DALPTISEVAGAGGGGPRRVALVGKPNVGKSSLLNRLSGDERSVVHDVAGTTVDPVD 245 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 DTAG+R+ E ++ ++ E IVL+DA+ P +QD Sbjct: 246 SLIEMDGKLWRFVDTAGLRRKVGQASGHEFYASVRTHGAIDAAEVAIVLVDASQPLTEQD 305 Query: 304 LRIVDSVFNTGHAVVLALNKWDMV-SDKLNLLQ---DLRTKAIKNLPQIGDIYINTISGR 359 R++ V G A+VLA NKWD+V D+ LL DL+ ++ P++ IS + Sbjct: 306 QRVLSMVVEAGRALVLAFNKWDLVDEDRRYLLDREIDLQLAQLQWAPRV------NISAK 359 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 TG + L+ ++ K W TR++T LN++ ++ PPP + R+ + TQ + Sbjct: 360 TGRAVQKLVPALETALKSWDTRVSTGRLNTFFKEIVAATPPPVRGGKQPRILFATQATAR 419 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 PP+F++F T + Y+R+L RLR F G PIR+ Sbjct: 420 PPTFVLFTT--GFLEAGYRRFLERRLRETFGFEGSPIRI 456 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 58/201 (28%), Positives = 100/201 (49%), Gaps = 13/201 (6%) Query: 174 MIENNKRNEESPKENITSEGKSSVKNISKPLRI-AVVGRPNVGKSTLINRLLGYNRLLTG 232 M ++ ++ES E + +++ +S P + AVVGRPNVGKSTL+NR+LG + Sbjct: 1 MTDDGTWSDESDWELGPDDISDAIEEVSAPPPVVAVVGRPNVGKSTLVNRILGRREAVVQ 60 Query: 233 SQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVL 292 G+TRD VS +W + DT G ++ L+Q +++ ++RT + I + Sbjct: 61 DVPGVTRDRVSYDASWSGQRFMVQDTGGWEPDAK---GLQQLVAEQASVAMRTADAIIFV 117 Query: 293 LDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIY 352 +D+ + D + +G V LA NK D N + A+ +L +G+ + Sbjct: 118 VDSVVGATAADEAAAKLLQRSGKPVFLAANKVD------NERGEADAAALWSL-GLGEPH 170 Query: 353 INTISGRTGEGLDDLMVSVLE 373 IS G G+ DL+ +V++ Sbjct: 171 --PISAMHGRGVADLLDAVVD 189 >gi|225352117|ref|ZP_03743140.1| hypothetical protein BIFPSEUDO_03732 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157364|gb|EEG70703.1| hypothetical protein BIFPSEUDO_03732 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 709 Score = 206 bits (523), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 134/462 (29%), Positives = 213/462 (46%), Gaps = 38/462 (8%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + +A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ A G F +VDT G Sbjct: 272 VGVLAVVGRPNVGKSTLVNRILGRRAAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGW- 330 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 + I + Q ++A+ A ++ ++D + G+T D I LR P+ + NK+ Sbjct: 331 EADVEGIESAIASQAQIAVQLADAVVLVVDGQVGLTNTDERIVKMLRASGKPVTLAVNKV 390 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D R ++ E + + E ISA H G EL K+ Sbjct: 391 DDRESEYLTAEFWKMGLGEPYGISAMHGRGIGELLDAALDSLKK---------------- 434 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 +E S S R+A+VGRPNVGKS+L+N+L R + +G TRD Sbjct: 435 ---------AEKTSGFLTPSHLRRVALVGRPNVGKSSLLNQLAHEERTVVNDLAGTTRDP 485 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 V DTAG+++ E + ++ ++ E +VL DA+ P Sbjct: 486 VDEVVTVDGEDWLFIDTAGIKRRLHKLSGAEYFSSLRTQAAIERSELALVLFDASQPISD 545 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVSD----KLNLLQDLRTKAIKNLPQIGDIYINTIS 357 QDL+++ + G +VL NKWD++ D ++ L + ++ +S Sbjct: 546 QDLKVMSQAVDAGRCIVLVFNKWDLMDDFDRQRMERLWKTEFDRVTWAQRV------NLS 599 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 +TG + L ++ + W RI T LN++L K Q +P P + R+ + TQ Sbjct: 600 AKTGWHTNRLARAMRGALESWDKRIPTGKLNAFLGKIQAAHPHPLRGGKQPRILFATQAS 659 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 + PP F+IF T + Y+RY+ LR F G PI++ Sbjct: 660 TRPPRFVIFAT--GFLEHGYRRYIERCLREEFGFEGSPIQIS 699 >gi|327399427|ref|YP_004340296.1| GTP-binding protein engA [Hippea maritima DSM 10411] gi|327182056|gb|AEA34237.1| GTP-binding protein engA [Hippea maritima DSM 10411] Length = 434 Score = 206 bits (523), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 145/468 (30%), Positives = 234/468 (50%), Gaps = 51/468 (10%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRL--YGQAIINGVIFNIVDTAGIAD 62 +AIVG PNVGKSTLFN LVKK +++ + PG TRDR+ YG+ V+F +DT G Sbjct: 4 VAIVGKPNVGKSTLFNALVKKNKSLILDMPGTTRDRIFEYGKIDDKDVLF--IDTGGFE- 60 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 ++ +N+Q +LAI+ + ++ + D ++ D I ++ K P I+ +NK D Sbjct: 61 -TEGEFSQNINEQIKLAIDSSDAVIVVFDLTTPLSIQDEEIFKYVVKSKKPYILTANKSD 119 Query: 123 TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 + Q Y+ Y F +I++ISA H KRN Sbjct: 120 IK-KQEFEYDYYK--FGDILKISAAH------------------------------KRNL 146 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 + KE + S K +IA+ GR NVGKS+LIN +LG NR + + G T DS+ Sbjct: 147 NTLKEKLGSLINEVEKRADCLAKIAITGRSNVGKSSLINAILGENRSVVSDKIGTTTDSI 206 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + + ++ + DTAG+RK ++ +++++ + S ++ + + L+DA Sbjct: 207 DTPFIYNSNCYLLIDTAGIRKKAKTKKAIDKLSSIFSFFAIDRSDICVFLIDAKEGLTST 266 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMV-----SDKLNLLQDLRTKAIKNLPQIGDIYINTIS 357 D I+D + +++ALNKWD+V S+ LL++ +LP IS Sbjct: 267 DKFIIDKIIEKNKGLIIALNKWDLVKNTPFSEYEKLLKE-------HLPFAWFAEFMPIS 319 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 + + L+ + + K+ RI T LN L QN P + + +LKYITQ+ Sbjct: 320 AIEVKNIGKLLKKIESVEKICSRRIPTHELNEKLHTIIRQNAPFSKKGKEVKLKYITQVD 379 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 ++PP F+IF P I E+YKRY+ N + F+ G I++ ++SSKN Sbjct: 380 TNPPHFVIFTNRPEDIEENYKRYVRNSMYKLFNFKGCSIKITYRSSKN 427 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 4/122 (3%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP 264 ++A+VG+PNVGKSTL N L+ N+ L G TRD + + + DT G Sbjct: 3 KVAIVGKPNVGKSTLFNALVKKNKSLILDMPGTTRDRIFEYGKIDDKDVLFIDTGGFETE 62 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 ++++ ++ ++ + + IV+ D T P QD I V + +L NK Sbjct: 63 GEFSQNINEQI----KLAIDSSDAVIVVFDLTTPLSIQDEEIFKYVVKSKKPYILTANKS 118 Query: 325 DM 326 D+ Sbjct: 119 DI 120 >gi|32473806|ref|NP_866800.1| GTP-binding protein [Rhodopirellula baltica SH 1] gi|32444342|emb|CAD74340.1| probable GTP-binding protein [Rhodopirellula baltica SH 1] Length = 472 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 128/460 (27%), Positives = 218/460 (47%), Gaps = 34/460 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKS+LFN L ++++A+V N G+TRDR+ + F ++DT G+ Sbjct: 24 VAIVGRPNVGKSSLFNWLARRRLAIVDNFEGVTRDRMTTLIESDDQFFELIDTGGMGVED 83 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + Q ++AI A +IL ++D + G+ P D + LR P+I+V+NK D Sbjct: 84 ADDLTSDVRRQIDMAIASADVILLVVDVQTGLMPLDEEVVERLRGVERPVILVANKADQE 143 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + E L ++ +S + +L VI +K Sbjct: 144 HQDIHADEFRRLGRGHLITVSTTQNRHRDDLIQVIVDRLPEK------------------ 185 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 E++ + S ++IA+VGR NVGKST +N L +R++ +G TRDSV + Sbjct: 186 -DEDLVAPESS--------MKIAIVGRRNVGKSTFVNTLAESDRMIVSEVAGTTRDSVDV 236 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + DT G+RK I L+ ++ +SVR + ++ DA K D Sbjct: 237 RFEIDGQTFLAIDTPGLRKRKSIRTDLDFYGTHRAQRSVRRADVVLMFFDALEKTSKVDK 296 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKL---NLLQDLRTKAIKNLPQIGDIYINTISGRTG 361 ++V + V+ +NKWD V ++ ++ LR + I I+G+TG Sbjct: 297 QLVGYIMEHHKPVIFVVNKWDKVDKEVPTERWVKYLR----HQFTTLSYAPIAFITGQTG 352 Query: 362 EGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 + +M + K ++R++T LN L+ Q+PP R ++ Y TQ+ + PP Sbjct: 353 RNVKAVMNHAAMLYKQAQSRVSTGELNRILRAAIEQHPPAMYQGRRPKIFYATQVSTEPP 412 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 + ++ C+ P + Y+RYLI +R + +PI++ Q Sbjct: 413 TVVVMCSDPKALTHDYQRYLIGWMRDHLPFGEVPIKLYMQ 452 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 40/169 (23%), Positives = 75/169 (44%), Gaps = 11/169 (6%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP 264 ++A+VGRPNVGKS+L N L + + G+TRD ++ + E+ DT GM Sbjct: 23 QVAIVGRPNVGKSSLFNWLARRRLAIVDNFEGVTRDRMTTLIESDDQFFELIDTGGMGVE 82 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 + L ++ ++ + + ++++D D +V+ + V+L NK Sbjct: 83 D--ADDLTSDVRRQIDMAIASADVILLVVDVQTGLMPLDEEVVERLRGVERPVILVANKA 140 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 D QD+ + L G ++ T+S DDL+ +++ Sbjct: 141 DQEH------QDIHADEFRRL---GRGHLITVSTTQNRHRDDLIQVIVD 180 >gi|41017011|sp|Q7URJ8|DER_RHOBA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|327537179|gb|EGF23928.1| small GTP-binding protein [Rhodopirellula baltica WH47] Length = 454 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 128/460 (27%), Positives = 218/460 (47%), Gaps = 34/460 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKS+LFN L ++++A+V N G+TRDR+ + F ++DT G+ Sbjct: 6 VAIVGRPNVGKSSLFNWLARRRLAIVDNFEGVTRDRMTTLIESDDQFFELIDTGGMGVED 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + Q ++AI A +IL ++D + G+ P D + LR P+I+V+NK D Sbjct: 66 ADDLTSDVRRQIDMAIASADVILLVVDVQTGLMPLDEEVVERLRGVERPVILVANKADQE 125 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + E L ++ +S + +L VI +K Sbjct: 126 HQDIHADEFRRLGRGHLITVSTTQNRHRDDLIQVIVDRLPEK------------------ 167 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 E++ + S ++IA+VGR NVGKST +N L +R++ +G TRDSV + Sbjct: 168 -DEDLVAPESS--------MKIAIVGRRNVGKSTFVNTLAESDRMIVSEVAGTTRDSVDV 218 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + DT G+RK I L+ ++ +SVR + ++ DA K D Sbjct: 219 RFEIDGQTFLAIDTPGLRKRKSIRTDLDFYGTHRAQRSVRRADVVLMFFDALEKTSKVDK 278 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKL---NLLQDLRTKAIKNLPQIGDIYINTISGRTG 361 ++V + V+ +NKWD V ++ ++ LR + I I+G+TG Sbjct: 279 QLVGYIMEHHKPVIFVVNKWDKVDKEVPTERWVKYLR----HQFTTLSYAPIAFITGQTG 334 Query: 362 EGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 + +M + K ++R++T LN L+ Q+PP R ++ Y TQ+ + PP Sbjct: 335 RNVKAVMNHAAMLYKQAQSRVSTGELNRILRAAIEQHPPAMYQGRRPKIFYATQVSTEPP 394 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 + ++ C+ P + Y+RYLI +R + +PI++ Q Sbjct: 395 TVVVMCSDPKALTHDYQRYLIGWMRDHLPFGEVPIKLYMQ 434 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 40/169 (23%), Positives = 75/169 (44%), Gaps = 11/169 (6%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP 264 ++A+VGRPNVGKS+L N L + + G+TRD ++ + E+ DT GM Sbjct: 5 QVAIVGRPNVGKSSLFNWLARRRLAIVDNFEGVTRDRMTTLIESDDQFFELIDTGGMGVE 64 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 + L ++ ++ + + ++++D D +V+ + V+L NK Sbjct: 65 D--ADDLTSDVRRQIDMAIASADVILLVVDVQTGLMPLDEEVVERLRGVERPVILVANKA 122 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 D QD+ + L G ++ T+S DDL+ +++ Sbjct: 123 DQEH------QDIHADEFRRL---GRGHLITVSTTQNRHRDDLIQVIVD 162 >gi|269302630|gb|ACZ32730.1| putative GTP-binding protein Era [Chlamydophila pneumoniae LPCoLN] Length = 485 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 141/479 (29%), Positives = 240/479 (50%), Gaps = 26/479 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAI+G PNVGKS+LFNRL K+ +A+V + G TRDRLYG+ GV ++DT G+ Sbjct: 4 IAILGRPNVGKSSLFNRLCKRSLAIVNSQEGTTRDRLYGELHAFGVPAQVIDTGGVDHNS 63 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 K + +Q EA ++L +ID + GIT D + L P+I+V+NK D+R Sbjct: 64 EDYFQKHIYNQALTGAKEADVLLLVIDIRCGITEEDAHLAKLLLPLKKPLILVANKADSR 123 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKI----FKQKYPNHPLEMIENNKR 180 + +E Y L ++IV S HD L I + ++ ++ ++ Sbjct: 124 QEELQIHETYKLGIRDIVVTSTAHDKHIDTLLQRIKLVANLPEPREEEGLEELSVDEHEE 183 Query: 181 NEESPKEN-------ITSEGKS---------SVKNISKPLRIAVVGRPNVGKSTLINRLL 224 +E + N + +EG S S + K L+IA++GRPNVGKS++IN LL Sbjct: 184 SEAALPSNTFPDFSEVFTEGFSPEEPCTIPESPQQAPKTLKIALIGRPNVGKSSIINGLL 243 Query: 225 GYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVR 284 R + + G TRD++ I ++ K+ DTAG+RK + S+E + ++ +++ Sbjct: 244 NEERCIIDNTPGTTRDNIDILYSHKDRQYLFIDTAGLRKMKSVKNSIEWISSSRTEKAIS 303 Query: 285 TCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSD--KLNLLQDLRTKAI 342 + ++++DAT + RI+ + ++ +NKWD++ + + +DLR Sbjct: 304 RADICLLVIDATQKLSSYEKRILSLISKRKKPHIILINKWDLLEEVRMEHYCKDLRATD- 362 Query: 343 KNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPT 402 P +G + IS T L + ++ E++ + ++ T +N L +N P Sbjct: 363 ---PYLGQAKMLCISATTKRNLKKIFSAIDELHHVVSNKVPTPIVNKTLASALHRNHPQV 419 Query: 403 IFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 I R R+ Y Q ++P FL+F + + + Y+ YL N L+ +F+L GIP + F+ Sbjct: 420 IQGRRLRIYYAIQKTTTPLQFLLFINAKSLLTKHYEYYLKNTLKSSFNLYGIPFDLEFK 478 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/130 (25%), Positives = 65/130 (50%), Gaps = 2/130 (1%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 L+IA++GRPNVGKS+L NRL + + SQ G TRD + + P ++ DT G+ Sbjct: 2 LKIAILGRPNVGKSSLFNRLCKRSLAIVNSQEGTTRDRLYGELHAFGVPAQVIDTGGVDH 61 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 S + ++ +++ + + ++++D ++D + + ++L NK Sbjct: 62 NSE--DYFQKHIYNQALTGAKEADVLLLVIDIRCGITEEDAHLAKLLLPLKKPLILVANK 119 Query: 324 WDMVSDKLNL 333 D ++L + Sbjct: 120 ADSRQEELQI 129 >gi|87303080|ref|ZP_01085878.1| GTP-binding protein EngA [Synechococcus sp. WH 5701] gi|87282247|gb|EAQ74207.1| GTP-binding protein EngA [Synechococcus sp. WH 5701] Length = 455 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 130/469 (27%), Positives = 231/469 (49%), Gaps = 43/469 (9%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKSTL NRL + + A+V + PG+TRDR Y + F +VDT G+ Sbjct: 6 VAIIGRPNVGKSTLVNRLCRSREAIVHDQPGVTRDRTYQEGFWGDRRFRVVDTGGLVFDD 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM--- 121 + ++ +Q LA+ EA + + ++D + G+T D AI +LR + +P+++ NK Sbjct: 66 DSEFLPEIREQANLALAEASVAVVIVDGQQGLTGADQAIADWLRGQKVPVLLAVNKCESP 125 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D +A + + L E +SA H GT +L + E I+ Sbjct: 126 DQGLAM--AADFWGLGLGEPHAVSAIHGAGTGDLLDKVIGYLPTTPEEETEEPIQ----- 178 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 +A++GRPNVGKS+L+N + G R + G TRD+ Sbjct: 179 ------------------------LAIIGRPNVGKSSLLNSICGEARAIVSPIRGTTRDT 214 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 + + + ++ DTAG+R+ ++ E + +S ++V + ++++DA + Sbjct: 215 IDTTIEREGKTWKLLDTAGIRRRRSVSYGPEYFGINRSFKAVERSDVCVLVIDALDGVTE 274 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLL----QDLRTKAIKNLPQIGDIYINTIS 357 QD R+ + G A V+ +NKWD + + + ++LR K + L ++ + ++ Sbjct: 275 QDQRVAGRIEEDGRACVIVVNKWDAIEKDSHTMAAMEKELRAK-LYFLDWAPMLFTSALT 333 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKT-QLQNPPPTIFNRYNRLKYITQI 416 G+ E + L + +E + + R+TTS +N LQ+ ++PP + R R+ Y TQ+ Sbjct: 334 GQRVESIFALALLAVEQH---RRRVTTSVVNEVLQEAVSWRSPPTSRGGRQGRIYYGTQV 390 Query: 417 QSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 + PPSF +F P E+Y+RY+ ++R G PIR+ ++ + Sbjct: 391 ATRPPSFTLFVNDPKLFGETYRRYVERQIREGLGFDGSPIRLFWRGKQQ 439 >gi|293363486|ref|ZP_06610242.1| ribosome-associated GTPase EngA [Mycoplasma alligatoris A21JP2] gi|292552835|gb|EFF41589.1| ribosome-associated GTPase EngA [Mycoplasma alligatoris A21JP2] Length = 434 Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 137/463 (29%), Positives = 238/463 (51%), Gaps = 43/463 (9%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKST FNRL+ +K+++V + PG+TRDRLY G +DT GI + + Sbjct: 5 VAIIGKPNVGKSTFFNRLIGRKVSIVYDQPGVTRDRLYENVDWVGKQLKFIDTGGI-EIE 63 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N +Q+ Q ++AI EA +I+FL D + IT D I + LRK N II V+NK+++ Sbjct: 64 NKPFQEQIQIQAKIAIEEADVIIFLFDGTSEITNDDLFIMNILRKSNKHIITVANKLESN 123 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 Q+ Y Y L I ISA H G E+ + L+ ++ ++ E+ Sbjct: 124 --QQFDYSWYKLGSDHIFAISALHGEGVGEV------------LDECLKYLDFSEAQED- 168 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 K +++++G+PN GKS+L+N L NR + +G TRDSV Sbjct: 169 -----------------KEFKLSIIGKPNAGKSSLLNNLAKENRSIVSEIAGTTRDSVKS 211 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 I DTAG+ K SR+ ES++ + ++M S+ + +++++D+T D Sbjct: 212 IVEINGQKYNIIDTAGIMKKSRLVESVDHYALMRAMDSLNEADLSLIIVDSTSQISHFDS 271 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLL----QDLRTKAIKNLPQIGDIYINTISGRT 360 RI+ +V+ +NKWD++ + N + ++LR K +P + ++ IS + Sbjct: 272 RIIGYALENNKPIVVVINKWDLIEKETNTMAQYEKNLRFK-FHFVPWVPFVF---ISAKF 327 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNP-PPTIFNRYNRLKYITQIQSS 419 + LD L+ ++ + I + L+ ++ +TQ+ P P R N + ++ + Sbjct: 328 NQRLDKLIKTIETVRTNLNRDIKPALLSKFIMETQMIQPAAPYNGGRLN-IYFVRKTLDK 386 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 P+F+ + + SY+R+L N++R F +G PI++ F++ Sbjct: 387 IPTFVFYVNNKKFLHFSYQRHLENQIRSTFDFTGCPIKLQFKN 429 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 44/124 (35%), Positives = 71/124 (57%), Gaps = 6/124 (4%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + ++I+G PN GKS+L N L K+ ++V G TRD + ING +NI+DTAGI Sbjct: 171 FKLSIIGKPNAGKSSLLNNLAKENRSIVSEIAGTTRDSVKSIVEINGQKYNIIDTAGIM- 229 Query: 63 GKNCSIAKQMNDQTEL----AINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVS 118 K + + ++ + ++NEA L L ++DS + I+ +D I + + N PI++V Sbjct: 230 -KKSRLVESVDHYALMRAMDSLNEADLSLIIVDSTSQISHFDSRIIGYALENNKPIVVVI 288 Query: 119 NKMD 122 NK D Sbjct: 289 NKWD 292 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 45/174 (25%), Positives = 81/174 (46%), Gaps = 24/174 (13%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP 264 ++A++G+PNVGKST NRL+G + Q G+TRD + + +W ++ DT G+ Sbjct: 4 KVAIIGKPNVGKSTFFNRLIGRKVSIVYDQPGVTRDRLYENVDWVGKQLKFIDTGGIE-- 61 Query: 265 SRITESLEQKTVKKSMQ-----SVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 +E K ++ +Q ++ + I L D T DL I++ + + ++ Sbjct: 62 ------IENKPFQEQIQIQAKIAIEEADVIIFLFDGTSEITNDDLFIMNILRKSNKHII- 114 Query: 320 ALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 V++KL Q K +G +I IS GEG+ +++ L+ Sbjct: 115 ------TVANKLESNQQFDYSWYK----LGSDHIFAISALHGEGVGEVLDECLK 158 >gi|320101768|ref|YP_004177359.1| ribosome-associated GTPase EngA [Isosphaera pallida ATCC 43644] gi|319749050|gb|ADV60810.1| ribosome-associated GTPase EngA [Isosphaera pallida ATCC 43644] Length = 547 Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 138/508 (27%), Positives = 238/508 (46%), Gaps = 73/508 (14%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLY---------------------- 42 +A+VG PNVGKS+LFN LV K++A+V PG+TRDR+ Sbjct: 6 VAVVGRPNVGKSSLFNWLVGKRVAIVEPTPGVTRDRVSTLLCLDFNERPTRHSSPRPRFK 65 Query: 43 ----------------GQAIINGVIFNIVDTAGIADGKNCSIAKQMNDQTELAINEAHLI 86 Q ++DT GI ++ + Q +A+ EA L+ Sbjct: 66 DVRDLLEEEDEELDEPSQPSDAARYVELIDTGGIGIVDRDDLSDHVERQIRIALEEASLV 125 Query: 87 LFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQRNFYEIYSLDFKEIVEISA 146 LF++D + G P D + LR+ N P I+V NK+D + E L F E + +S Sbjct: 126 LFVVDVRDGRLPLDEEVADRLRRINRPTILVVNKVDHPGLEDRVAEFDRLGFDERILVST 185 Query: 147 EHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRI 206 + + S L +I + + PL + ++NK P+ + ++I Sbjct: 186 KENRNRSGLLDLIAR-------SVPL-VDDDNK-----PRAAV--------------MKI 218 Query: 207 AVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSR 266 AVVGRPN GKST IN L R++ +G TRDSV + + P DTAG+R+ ++ Sbjct: 219 AVVGRPNTGKSTFINTLAQEERMIVSEVAGTTRDSVDVHFELDGLPFTAIDTAGVRRKAK 278 Query: 267 ITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 + +SL+ ++ ++ +S+R + T++ LD T K D ++ D + + +NKWD+ Sbjct: 279 LRDSLDYFSLHRAQRSIRRSDVTLLFLDPTQGITKLDKQLADYIQQQYKPCIFVINKWDL 338 Query: 327 VSDKLNLLQ--DLRTKAI------KNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLW 378 + + N Q T A+ + + + + I+ +TG+ + L+ + K Sbjct: 339 IVEGPNRAQAPPQETMAVVAAAIEREFRGLAHVPLAFITAKTGKNVKALINHAQALFKKA 398 Query: 379 KTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYK 438 ++ T+ LN L++ NPPP + ++ +ITQ+ +PP+ ++F P+ SY+ Sbjct: 399 NLQVPTARLNKVLRQILTSNPPPIREGKRPKVYFITQVAVAPPTLVLFVNNPDLFDTSYR 458 Query: 439 RYLINRLRINFSLSGIPIRMCFQSSKNP 466 RYL NR R +P+++ + +P Sbjct: 459 RYLSNRFRDLLPFGTVPVKIYLRDRNDP 486 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 64/125 (51%), Gaps = 6/125 (4%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + IA+VG PN GKST N L +++ +V G TRD + ++G+ F +DTAG+ Sbjct: 215 VMKIAVVGRPNTGKSTFINTLAQEERMIVSEVAGTTRDSVDVHFELDGLPFTAIDTAGVR 274 Query: 62 DGKNCSIAKQMN----DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIV 117 + + ++ + + +I + + L +D GIT D + +++++ P I V Sbjct: 275 --RKAKLRDSLDYFSLHRAQRSIRRSDVTLLFLDPTQGITKLDKQLADYIQQQYKPCIFV 332 Query: 118 SNKMD 122 NK D Sbjct: 333 INKWD 337 Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust. Identities = 21/39 (53%), Positives = 27/39 (69%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 ++AVVGRPNVGKS+L N L+G + G+TRD VS Sbjct: 5 KVAVVGRPNVGKSSLFNWLVGKRVAIVEPTPGVTRDRVS 43 >gi|149375007|ref|ZP_01892780.1| predicted GTPase [Marinobacter algicola DG893] gi|149360896|gb|EDM49347.1| predicted GTPase [Marinobacter algicola DG893] Length = 453 Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 136/451 (30%), Positives = 232/451 (51%), Gaps = 33/451 (7%) Query: 22 LVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNCSIAKQMNDQTELAIN 81 + + + A+V + PG+TRDR YG+ G F ++DT G+ G+ A +M Q+ A+ Sbjct: 1 MTRSRDALVADFPGLTRDRKYGEGNYEGQRFIVIDTGGLTGGEEGLDA-EMARQSMQAVE 59 Query: 82 EAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQRNFYEIYSLDFKEI 141 EA ++LFL+D KAG+ D I + LRK +V NK D + + Y+L F Sbjct: 60 EADIVLFLVDGKAGLNGGDELIAAHLRKTGKRAHLVVNKTDGQDPDIAASDFYALGFDST 119 Query: 142 VEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEESPKENITSEGKSSVKNIS 201 I+A H+ G + + +++ R + P Sbjct: 120 YLIAASHNRGIRSMLEELLPSEEEREA---------QDRADRYPG--------------- 155 Query: 202 KPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGM 261 +RI +VGRPNVGKSTL+NR+LG +R++ G TRDSV I + ++ + DTAG+ Sbjct: 156 --IRIGIVGRPNVGKSTLVNRMLGEDRVIVYDMPGTTRDSVYIPFERMDNQYTLIDTAGV 213 Query: 262 RKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLAL 321 R+ ++E +E+ ++ K++Q++ I+++DA QDL ++ V + G ++V+A+ Sbjct: 214 RRRKNVSEVVEKFSIIKTLQAIDDAHVVILVIDAREGLVDQDLHLIGFVLDAGRSLVVAV 273 Query: 322 NKWDMVS--DKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWK 379 NKWD + D+ + + ++ + + L YI+ + G +G G+ + SV + Sbjct: 274 NKWDGMDPEDRAKVKEQVQRR-LDFLDYADKHYISALHG-SGVGV--MYDSVHACYESAM 329 Query: 380 TRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKR 439 + T+ L + LQ Q+ PP + R +L+Y Q S+PP ++ + +P +YKR Sbjct: 330 AKWPTNRLTAILQDATAQHQPPLVQGRRIKLRYAHQGGSNPPVIVVHGNQTDALPGAYKR 389 Query: 440 YLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 YL N R ++G PIR F+SS+NP+ K Sbjct: 390 YLENTFRKVLKVNGSPIRFEFRSSENPFANK 420 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 54/193 (27%), Positives = 96/193 (49%), Gaps = 12/193 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 I IVG PNVGKSTL NR++ + +V + PG TRD +Y + ++DTAG+ K Sbjct: 158 IGIVGRPNVGKSTLVNRMLGEDRVIVYDMPGTTRDSVYIPFERMDNQYTLIDTAGVRRRK 217 Query: 65 NCS--IAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 N S + K +T AI++AH+++ +ID++ G+ D + F+ +++ NK D Sbjct: 218 NVSEVVEKFSIIKTLQAIDDAHVVILVIDAREGLVDQDLHLIGFVLDAGRSLVVAVNKWD 277 Query: 123 -------TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQ---KYPNHPL 172 ++ ++ + LD+ + ISA H G ++ + ++ K+P + L Sbjct: 278 GMDPEDRAKVKEQVQRRLDFLDYADKHYISALHGSGVGVMYDSVHACYESAMAKWPTNRL 337 Query: 173 EMIENNKRNEESP 185 I + + P Sbjct: 338 TAILQDATAQHQP 350 >gi|225455575|ref|XP_002268933.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 737 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 143/492 (29%), Positives = 249/492 (50%), Gaps = 57/492 (11%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPG--ITRDRLYGQAIINGVIFNIVDTA 58 ++ T+ +VG PNVGKS LFNR A+V N P +TRD G A + + F ++D+A Sbjct: 141 LLPTVILVGRPNVGKSALFNR-----EALVYNTPDDHVTRDFREGIAKLGDLRFRVLDSA 195 Query: 59 GIA-DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKK--NIPII 115 G+ + SI + D T + + +FLID +AG+ P D + +LR+ I I Sbjct: 196 GLEMAATSGSILGRTADMTANVLARSQFAIFLIDVRAGLHPMDLEVGKWLRRHAPGICTI 255 Query: 116 IVSNKMDTRIAQRNFY-----EIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNH 170 +V NK ++ E Y L F + + ISAE LG +EL+ + + + +H Sbjct: 256 LVMNKSESLDDGAGLLAAAAGEAYELGFGDPIAISAETGLGMAELYESLRPLLE----DH 311 Query: 171 PLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLL 230 L+++++ E S V+ PL++A+VGRPNVGKSTL+N LL NR+L Sbjct: 312 MLQVLDDKGSQENS---------SCDVEESKSPLQLAIVGRPNVGKSTLLNTLLQENRVL 362 Query: 231 TGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTI 290 G ++G+TRDSV + ++ + + DTAG + ++ + +V +S +S+ Sbjct: 363 VGPEAGLTRDSVRAQFQFQGRTVYLVDTAGWLQRTKQEKGPASLSVMQSRKSIMRAHVVA 422 Query: 291 VLLDAT------IPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLN------LLQDLR 338 ++LDA + ++ I G +V+ +NK D++ + N +++ + Sbjct: 423 LVLDAEEIANARSSMKHAEVVIARRAVEEGRGLVVIVNKMDLLKGRKNSKLYEKVMEAVP 482 Query: 339 TKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQN 398 + +PQ+ I + IS G G +M V++ + W R++T+ LN WL+K Sbjct: 483 EEIQMVIPQVTGIPVVFISALEGRGRISVMRQVIDTYEKWCLRLSTARLNRWLRK----- 537 Query: 399 PPPTIFNRYN--------RLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFS 450 + +R++ ++KY TQ+++ PP+F+ F ++ + R+L L+ +F Sbjct: 538 ----VMSRHSWKDQAAQPKIKYFTQVKARPPTFVAFMGGKTQLSNTDLRFLTKSLKEDFD 593 Query: 451 LSGIPIRMCFQS 462 L GIPIR+ +S Sbjct: 594 LGGIPIRIMQRS 605 >gi|15618753|ref|NP_225039.1| GTP-binding protein EngA [Chlamydophila pneumoniae CWL029] gi|15836377|ref|NP_300901.1| GTP-binding protein EngA [Chlamydophila pneumoniae J138] gi|16752195|ref|NP_445562.1| GTP-binding protein EngA [Chlamydophila pneumoniae AR39] gi|33242204|ref|NP_877145.1| GTP-binding protein EngA [Chlamydophila pneumoniae TW-183] gi|8134434|sp|Q9Z762|DER_CHLPN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|4377159|gb|AAD18982.1| GTPase/GTP-binding protein [Chlamydophila pneumoniae CWL029] gi|7189939|gb|AAF38801.1| GTP-binding protein [Chlamydophila pneumoniae AR39] gi|8979218|dbj|BAA99052.1| GTPase/GTP-binding protein [Chlamydophila pneumoniae J138] gi|33236715|gb|AAP98802.1| GTPase/GTP-binding protein [Chlamydophila pneumoniae TW-183] Length = 487 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 141/481 (29%), Positives = 244/481 (50%), Gaps = 28/481 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAI+G PNVGKS+LFNRL K+ +A+V + G TRDRLYG+ GV ++DT G+ Sbjct: 4 IAILGRPNVGKSSLFNRLCKRSLAIVNSQEGTTRDRLYGELHAFGVPAQVIDTGGVDHNS 63 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 K + +Q EA ++L +ID + GIT D + L P+I+V+NK D+R Sbjct: 64 EDYFQKHIYNQALTGAKEADVLLLVIDIRCGITEEDAHLAKLLLPLKKPLILVANKADSR 123 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHD------LGTSELHSVIFKIFKQKYPNHPLEMIENN 178 + +E Y L ++IV S HD L +L + + + +++ ++ + Sbjct: 124 QEELQIHETYKLGIRDIVVTSTAHDKHIDTLLQRIKLVANLPEPREEEEEGLEELSVDEH 183 Query: 179 KRNEESPKEN-------ITSEGKS---------SVKNISKPLRIAVVGRPNVGKSTLINR 222 + +E + N + +EG S S + K L+IA++GRPNVGKS++IN Sbjct: 184 EESEAALPSNTFPDFSEVFTEGFSPEEPCTIPESPQQAPKTLKIALIGRPNVGKSSIING 243 Query: 223 LLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQS 282 LL R + + G TRD++ I ++ K+ DTAG+RK + S+E + ++ ++ Sbjct: 244 LLNEERCIIDNTPGTTRDNIDILYSHKDRQYLFIDTAGLRKMKSVKNSIEWISSSRTEKA 303 Query: 283 VRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSD--KLNLLQDLRTK 340 + + ++++DAT + RI+ + ++ +NKWD++ + + +DLR Sbjct: 304 ISRADICLLVIDATQKLSSYEKRILSLISKRKKPHIILINKWDLLEEVRMEHYCKDLRAT 363 Query: 341 AIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPP 400 P +G + IS T L + ++ E++ + ++ T +N L +N P Sbjct: 364 D----PYLGQAKMLCISATTKRNLKKIFSAIDELHHVVSNKVPTPIVNKTLASALHRNHP 419 Query: 401 PTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCF 460 I R R+ Y Q ++P FL+F + + + Y+ YL N L+ +F+L GIP + F Sbjct: 420 QVIQGRRLRIYYAIQKTTTPLQFLLFINAKSLLTKHYEYYLKNTLKSSFNLYGIPFDLEF 479 Query: 461 Q 461 + Sbjct: 480 K 480 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/130 (25%), Positives = 65/130 (50%), Gaps = 2/130 (1%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 L+IA++GRPNVGKS+L NRL + + SQ G TRD + + P ++ DT G+ Sbjct: 2 LKIAILGRPNVGKSSLFNRLCKRSLAIVNSQEGTTRDRLYGELHAFGVPAQVIDTGGVDH 61 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 S + ++ +++ + + ++++D ++D + + ++L NK Sbjct: 62 NSE--DYFQKHIYNQALTGAKEADVLLLVIDIRCGITEEDAHLAKLLLPLKKPLILVANK 119 Query: 324 WDMVSDKLNL 333 D ++L + Sbjct: 120 ADSRQEELQI 129 >gi|254796894|ref|YP_003081731.1| putative GTP-binding protein EngA [Neorickettsia risticii str. Illinois] gi|254590130|gb|ACT69492.1| putative GTP-binding protein EngA [Neorickettsia risticii str. Illinois] Length = 480 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 144/478 (30%), Positives = 253/478 (52%), Gaps = 52/478 (10%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIIN-GVIFNIVDTAGI 60 ++ ++IVG NVGKSTLFN++ ++K ++ + G+TRD + + +N G F ++DTAG Sbjct: 11 VFRVSIVGKANVGKSTLFNKMAREKRSITMDRKGVTRDVVVRKISLNEGKSFLLLDTAGF 70 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKK--NIPIIIVS 118 ++ ++TE AI E+ +ILF+ID+K I D S+LR+ N I++V Sbjct: 71 NPQHPETV-----ERTEYAIKESDMILFVIDNK--IDSEDMLFASWLRRNAGNSKIVLVC 123 Query: 119 NKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 NK D + R+ ++ F+ + ISAEH LG SEL S I + + L++ EN+ Sbjct: 124 NKSDRK--DRDDCSLFG--FQNVFLISAEHSLGLSELISYI-----ESFIPEQLDIPEND 174 Query: 179 KRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 + + +R++++G+PNVGKS+L+N+ +G +R+L +G T Sbjct: 175 SEKQ-------------------RRIRVSILGQPNVGKSSLMNKFIGKDRVLVLPIAGTT 215 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLD-ATI 297 RD +S + WK E+ DTAG+RK R+T+ LE+ +++++ + I + D + Sbjct: 216 RDPISDEFQWKCTTFELVDTAGLRKKQRVTDGLEKICNSRALRTSAESDVVIFMCDISNF 275 Query: 298 PFEKQDLRIVDSVFNTGHAVVLALNKWDMV-SDKLNLLQDLRTKAIKNL--PQIGDIYIN 354 E+QD +++ + G ++L NK D V + +L ++D + + L QI +I+ Sbjct: 276 TLERQDFLLMNKILEQGKPMILVGNKKDAVNATELESIKDFISLQAQKLIASQIPIFFIS 335 Query: 355 TISGRTGEGLDDLMVSVLEINKLW---KTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLK 411 + D + E +L+ K I T LN WLQ+ +P P + ++ +LK Sbjct: 336 CLHE------SDFSCILDECRRLYDDSKRNIPTHRLNVWLQEIIRHHPHPMVNSKPVKLK 389 Query: 412 YITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIK 469 YI +I +F++ P + ESY Y+ N L +F + GIP+ + + + NPY++ Sbjct: 390 YIKKILYK-FAFVLSANRPELVAESYLNYIRNSLVRDFRIYGIPVTLTLKKNANPYVE 446 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 68/138 (49%), Gaps = 24/138 (17%) Query: 197 VKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV--SISWNWKNHPIE 254 V N+ R+++VG+ NVGKSTL N++ R +T + G+TRD V IS N + Sbjct: 5 VFNMQSVFRVSIVGKANVGKSTLFNKMAREKRSITMDRKGVTRDVVVRKISLN-EGKSFL 63 Query: 255 IFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVF--- 311 + DTAG +TV+++ +++ + + ++D I E D +F Sbjct: 64 LLDTAGFNPQ-------HPETVERTEYAIKESDMILFVIDNKIDSE-------DMLFASW 109 Query: 312 ---NTGHA-VVLALNKWD 325 N G++ +VL NK D Sbjct: 110 LRRNAGNSKIVLVCNKSD 127 >gi|330791039|ref|XP_003283602.1| hypothetical protein DICPUDRAFT_6420 [Dictyostelium purpureum] gi|325086462|gb|EGC39851.1| hypothetical protein DICPUDRAFT_6420 [Dictyostelium purpureum] Length = 461 Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 146/488 (29%), Positives = 245/488 (50%), Gaps = 57/488 (11%) Query: 5 IAIVGAPNVGKSTLFNRLVK-KKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA-- 61 IAI+G PNVGKST+FNR+++ ++ A+V PG TRDR YG+A + G F +VDT G+ Sbjct: 3 IAIIGKPNVGKSTIFNRIIQGQRQALVEEIPGTTRDRYYGEAFLYGREFILVDTGGLIGE 62 Query: 62 ---DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKK-----NIP 113 +G+ + ++ Q E+AI E+ ILF++D K+GITP D + LRKK P Sbjct: 63 PKDEGEKDQFQQVIHSQAEIAIEESDAILFVLDYKSGITPIDKELARMLRKKKQSLNGKP 122 Query: 114 IIIVSNKMDTRIAQRNFYE-----IYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYP 168 I I NK D + + +E + L F E + SA H G +HS +F+ K+P Sbjct: 123 IYIAVNKADNVVQRSEGFEDLKVQVTRLGFGEPMPFSALHGDG---VHS-MFETILSKFP 178 Query: 169 NHPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNR 228 L +N+R E+ P+RI++VG+PN GKS+L+N+++ R Sbjct: 179 YMDL----SNERIEQELGPG--------------PIRISIVGKPNAGKSSLLNKIIDEQR 220 Query: 229 LLTGSQSGITRDSVSISWNWKN-HPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCE 287 + G T D V ++ W++ H + + DTAG+R+ S LE+ +V +++S+ Sbjct: 221 SIVSDIPGTTHDPVDCNFLWRDKHELCLVDTAGIRRRSTHKVGLEKSSVLWALKSIEKSH 280 Query: 288 TTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM----------VSDKLNLLQDL 337 +++DAT+ QDL+I + + ++ +NKWD+ +SD+L + Sbjct: 281 VVFLVIDATVGITDQDLKIASFIMENRKSCIILVNKWDLYLKNKKTREELSDQL-FFHNF 339 Query: 338 RTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSV-LEINKLWKTRITTSYLNSWLQKTQL 396 + + N + ++ + +G DL + V E K ++ S L +++ Sbjct: 340 QKQNTTNFVPV--LFTSAKTGFCVPTAIDLSIKVFFEREK----KLKISQLLQIIKEATF 393 Query: 397 QNPPPTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 ++ P +LKY Q + PP+FL + P + S RYL+ +R + G PI Sbjct: 394 KHKFPKKGKNSLKLKYAIQTKHFPPTFLFWVNNPEDVDPSIVRYLLKSIREFYPFVGTPI 453 Query: 457 RMCFQSSK 464 + F+ +K Sbjct: 454 YIKFRRNK 461 >gi|323453254|gb|EGB09126.1| hypothetical protein AURANDRAFT_37344 [Aureococcus anophagefferens] Length = 540 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 137/483 (28%), Positives = 233/483 (48%), Gaps = 48/483 (9%) Query: 4 TIAIVGAPNVGKSTLFNRLVK--KKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI- 60 T+AI+G PNVGKS+L NRL KK + N G+TRDR+Y +A G F++VDT G+ Sbjct: 70 TVAIIGRPNVGKSSLVNRLCDAGKKGTIAVNEAGVTRDRVYQKAEWCGRTFDVVDTGGLL 129 Query: 61 -ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRK---KNIPIII 116 D + ++ +Q LA+ EA + ++D +AG T D I FLR+ + + +++ Sbjct: 130 FEDEEGALFLDEIREQATLALREACACVVVVDGRAGSTRLDDDIARFLRRWPDQTLEVVL 189 Query: 117 VSNKMDTRIAQRN---FYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLE 173 NK ++ A+R + + L E SA H G +E+ + Sbjct: 190 AVNKCES--AEREAELVADFWPLGLGEPRACSAIHGNGVAEVLDALL------------- 234 Query: 174 MIENNKRNEESPKENITSEGKSS-VKNI----SKP-LRIAVVGRPNVGKSTLINRLL--G 225 P + + E K++ +K + +KP + + +GRPNVGKS+L+NR L G Sbjct: 235 -----------PALDASIEAKAAQIKTMDAIDAKPHVNVCFLGRPNVGKSSLLNRFLGPG 283 Query: 226 YNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRIT-ESLEQKTVKKSMQSVR 284 R + +G TRD+V + DTAG+R+ +R+T + E + V +++++ R Sbjct: 284 ETRAIVSDVAGTTRDAVDAELDVDGTIFRFVDTAGVRRKARVTKQGTEPEMVARALRTAR 343 Query: 285 TCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKN 344 + ++++DAT QD + V + G A V+ NKWD DK K IK Sbjct: 344 LADVVLLVVDATQELSDQDAALAQRVADDGRACVVLANKWDAYEDKDEASTRAVEKKIKE 403 Query: 345 -LPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTI 403 L + + +S +TG+ + ++ + R+ T+ LN ++ L PPP Sbjct: 404 TLTAVSWAEVVFLSAKTGQRCLKVYAALQRAVDAHRRRVATATLNEVIRDAMLWQPPPAS 463 Query: 404 FNRYNRLK--YITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 K +++Q +PP+ + C P ++YKRYL +LR + + +G P+ F+ Sbjct: 464 AGGKAGAKIYFVSQTAVAPPTIVAMCNSPTAFTDNYKRYLERKLRESLNFAGTPVSFIFR 523 Query: 462 SSK 464 + Sbjct: 524 GRR 526 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/179 (23%), Positives = 82/179 (45%), Gaps = 7/179 (3%) Query: 166 KYPNHPLEMIENNKRNEESPKENITSEGKSSVKNISKPLR--IAVVGRPNVGKSTLINRL 223 + P+ I++ + E + + +S +K + + R +A++GRPNVGKS+L+NRL Sbjct: 29 RRPSRLGATIDDTEAPEAAFGASSSSGAPKRLKRVPRGARPTVAIIGRPNVGKSSLVNRL 88 Query: 224 L--GYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQ 281 G + +++G+TRD V W ++ DT G+ + +++ Sbjct: 89 CDAGKKGTIAVNEAGVTRDRVYQKAEWCGRTFDVVDTGGLLFEDEEGALFLDEIREQATL 148 Query: 282 SVRTCETTIVLLDATIPFEKQD---LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDL 337 ++R +V++D + D R + + VVLA+NK + + L+ D Sbjct: 149 ALREACACVVVVDGRAGSTRLDDDIARFLRRWPDQTLEVVLAVNKCESAEREAELVADF 207 >gi|119513020|ref|ZP_01632078.1| Small GTP-binding protein domain [Nodularia spumigena CCY9414] gi|119462337|gb|EAW43316.1| Small GTP-binding protein domain [Nodularia spumigena CCY9414] Length = 454 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 127/464 (27%), Positives = 229/464 (49%), Gaps = 35/464 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKSTL NRL ++ A+V + PG+TRDR Y + F +VDT G+ Sbjct: 6 VAIIGRPNVGKSTLVNRLAGEQTAIVHDEPGVTRDRTYMPSYWRDRDFLVVDTGGLVFND 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 + + Q A+++A + ++D + G+T D I ++LR++ +P+++ NK ++ Sbjct: 66 DTEFLPLIRQQALTALSQASAAILVVDGQTGLTGSDQEIATWLRQQPVPVLLAVNKCESP 125 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 E + L E ISA H GT EL + +H + E + NE Sbjct: 126 DQGAVQASEFWGLGLGEPYPISAIHGSGTGELLDELI--------SHIPIVTEVEEDNE- 176 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 +++A++GRPNVGKS+L+N +G R + SG TRD++ Sbjct: 177 --------------------IKVAIIGRPNVGKSSLLNAFVGEERSIVSPISGTTRDAID 216 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + + + DTAG+R+ +I E ++ ++ +++R + ++++DA QD Sbjct: 217 TVISRNDQVYRLIDTAGIRRKKQIDYGTEFFSINRAFKAIRRADVVLMVIDALDGVTDQD 276 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTI--SGRTG 361 ++ + + G A ++ +NKWD + + D K I++ + + TI S TG Sbjct: 277 QKLAGRIIDEGRACIIVVNKWDAIEKDSYTIYDYE-KTIESRLHFTE-WAETIFVSASTG 334 Query: 362 EGLDDLMVSVLEINKLWKTRITTSYLNSWL-QKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 + +D ++ V E + K R++TS +N L +PP + R ++ Y TQ+ P Sbjct: 335 QRVDKILDLVNEAAESHKRRVSTSVINEVLTDAVSWHSPPASRGGRQGKIYYGTQVGIQP 394 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 P+ +F + ++Y+RY+ + R G P+R+ ++S K Sbjct: 395 PTIALFVNEAKRFNDNYRRYIERQFRKQLGFKGTPMRLLWRSKK 438 >gi|294790886|ref|ZP_06756044.1| ribosome-associated GTPase EngA [Scardovia inopinata F0304] gi|294458783|gb|EFG27136.1| ribosome-associated GTPase EngA [Scardovia inopinata F0304] Length = 725 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 133/465 (28%), Positives = 221/465 (47%), Gaps = 44/465 (9%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI- 60 + IA+VG PNVGKSTL NR++ ++ A+V + PG+TRDR+ A G F ++DT G Sbjct: 289 VGQIAVVGRPNVGKSTLVNRILGRRAAIVEDTPGVTRDRVSYDANWAGTDFKVIDTGGWE 348 Query: 61 --ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVS 118 +G +IA +Q ++A+N + ++ ++D G T D I + LR P+ + Sbjct: 349 SDVEGIESAIA----EQAQIAMNLSDAVILVVDGTVGPTRTDDRIAALLRSSGKPVTVAV 404 Query: 119 NKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 NK DT+ + E + L E + ISA H G +L + + K+ Sbjct: 405 NKADTQEEEYQAAEFWKLGLGEPIPISAMHGRGVGDLLDLSLDMLKK------------- 451 Query: 179 KRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 S S R+A++GRPNVGKS+L+N L NR + Q+G T Sbjct: 452 ------------VSALSGTATDSSLRRVALIGRPNVGKSSLLNELAQDNRSVVNDQAGTT 499 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RD + + DTAG+++ + + ++ ++ E +VL DA+ P Sbjct: 500 RDPIDQVVTIGSKDWLFIDTAGIKRRLHKQTGADYYSSLRTQAAIERSELALVLFDASEP 559 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSD----KLNLLQDLRTKAIKNLPQIGDIYIN 354 QDL+++ + G A+VL NKWD + + +L L + + ++ Sbjct: 560 ISDQDLKVMSQAVDAGRAIVLVFNKWDKLDEFSRARLERLWETEFNRVTWAQRV------ 613 Query: 355 TISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYIT 414 +S +TG + L+ ++ + W+ RI T LNS+L + Q +P P + R+ + T Sbjct: 614 NLSAKTGWHTNRLVTAMDKALSSWEQRIPTGKLNSFLGQLQAAHPHPLRGGKQPRILFAT 673 Query: 415 QIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 Q + PP F+IF T + Y+RY+ LR F G P+++ Sbjct: 674 QAATRPPRFVIFTT--GFLEHGYRRYIERSLREEFGFEGTPLQIS 716 Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 50/177 (28%), Positives = 85/177 (48%), Gaps = 9/177 (5%) Query: 149 DLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAV 208 DL + +++ + + + L+ + + + P EG V +IAV Sbjct: 241 DLVNDAIDQELYREYVAQLDGYDLDQTDQALIDLQDPDAIQEEEGGRKVG------QIAV 294 Query: 209 VGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRIT 268 VGRPNVGKSTL+NR+LG + G+TRD VS NW ++ DT G Sbjct: 295 VGRPNVGKSTLVNRILGRRAAIVEDTPGVTRDRVSYDANWAGTDFKVIDTGGWESD---V 351 Query: 269 ESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 E +E +++ ++ + I+++D T+ + D RI + ++G V +A+NK D Sbjct: 352 EGIESAIAEQAQIAMNLSDAVILVVDGTVGPTRTDDRIAALLRSSGKPVTVAVNKAD 408 >gi|269218471|ref|ZP_06162325.1| ribosome-associated GTPase EngA [Actinomyces sp. oral taxon 848 str. F0332] gi|269211582|gb|EEZ77922.1| ribosome-associated GTPase EngA [Actinomyces sp. oral taxon 848 str. F0332] Length = 560 Score = 204 bits (518), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 137/457 (29%), Positives = 229/457 (50%), Gaps = 31/457 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTL NR+V +++AVV + PG+TRDR+ A G F +VDT G + Sbjct: 124 LAVVGRPNVGKSTLVNRIVGRRVAVVQDVPGVTRDRVGYPASWAGRDFTLVDTGGW-EID 182 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I + Q E A+ A ++ ++D+ GIT D I LR+ P+++ +NK+D+ Sbjct: 183 VAGIDASVARQAEAAVQAADAVVLVVDANVGITDADADIVKLLRRSKRPVVLAANKVDSP 242 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + + ++ L E ISA H GT +L + E S Sbjct: 243 MQESDAAVLWGLGLGEPYPISALHGRGTGDLLDAVLAALP-----------------ERS 285 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 EG P R+A++GRPNVGKS+L+NRL G R++ +G TRD V Sbjct: 286 AVAAALPEG---------PRRVALLGRPNVGKSSLLNRLAGSERVVVDPTAGTTRDPVDE 336 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + DTAG+R+ T+ + ++ ++ E +VL+DA+ P +QD+ Sbjct: 337 AIELDGQTWIFVDTAGIRRRVHQTKGADFYASLRTRGALGKAELALVLIDASEPLTEQDI 396 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 R++ + G A+V+ NKWD+V + + ++L + ++L Q+ +S TG Sbjct: 397 RVMQQAIDAGRALVVVCNKWDLVDE--HRRRELDREMDRDLVQVQWAERVNLSAATGWHT 454 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 + L ++ W+ R+ T LN++L + +P P R R+ + TQ + PP F+ Sbjct: 455 NRLTRAMDTALDSWEARVPTGKLNAFLGELAAAHPHPVRSGRQPRILFATQASTRPPRFV 514 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 +F + I Y+R++ N++R F +G PI + + Sbjct: 515 LFAS--GFIEAGYRRFVENKIRETFGFAGTPIEISVR 549 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/75 (36%), Positives = 40/75 (53%) Query: 186 KENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSIS 245 +E++ + + P +AVVGRPNVGKSTL+NR++G + G+TRD V Sbjct: 104 EEDVAVLAGGAADRPAAPPVLAVVGRPNVGKSTLVNRIVGRRVAVVQDVPGVTRDRVGYP 163 Query: 246 WNWKNHPIEIFDTAG 260 +W + DT G Sbjct: 164 ASWAGRDFTLVDTGG 178 >gi|224417838|ref|ZP_03655844.1| GTP-binding protein EngA [Helicobacter canadensis MIT 98-5491] Length = 473 Score = 204 bits (518), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 133/456 (29%), Positives = 228/456 (50%), Gaps = 19/456 (4%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAI+G PN GKS+LFNR K ++A+ G TRD + F ++DT G+ + Sbjct: 14 TIAIMGRPNAGKSSLFNRFCKSRIAITSEIAGTTRDVKKANVSLKDTPFLLLDTGGLDES 73 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + + Q+ + A A LIL+++D K P D I L+KKN I +V NK+D Sbjct: 74 DSLFV--QVTKHSHNAGESADLILYVVDGKMPPNPLDKKIFYTLQKKNPNIFLVVNKIDN 131 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 Q N +E + IS H+ G +L I ++ K+ ++ Sbjct: 132 DKEQSNAWEFSEFGACHLFFISVSHNRGIGKLEESIVRLLKKDSLTQLFNAVD------- 184 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 + S+++ + + I ++GR NVGKS+L+N LLG R + S++G T D V Sbjct: 185 EEESLEEFLETSAIQEKEEVINIGIIGRVNVGKSSLLNALLGQERSVVSSKAGTTIDPVD 244 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + + DTAG+R+ +I E LE+ + ++ + ++ + +++LDA+ PF + D Sbjct: 245 EMGEIEGRKVNFVDTAGIRRRGKI-EGLEKFALNRTREILKRSDIAVLVLDASSPFVELD 303 Query: 304 LRIVDSVFNTGHAVVLALNKWDMV-SDKLNLLQD--LRTKAIKNLPQIGDIYINTISGRT 360 +I + V++ LNKWD+ D +++D LR K + P + TIS + Sbjct: 304 EKIAGLIDEFKLGVIVVLNKWDIAHKDYKGIMEDFRLRFKFLDYAPVL------TISAKN 357 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G + L +L++ + + RI T+ +N +++ +++P P+ + ++ Y TQ ++ P Sbjct: 358 GRHIQKLEQEILKVYEHFSYRIPTAKINEIIKEATMRHPIPSDRGKIVKVYYATQFETKP 417 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 P + PN + SYKRYL+N L+ F SG I Sbjct: 418 PQIALIMNRPNSLHFSYKRYLVNFLQERFDFSGTRI 453 Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 48/173 (27%), Positives = 85/173 (49%), Gaps = 11/173 (6%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI- 60 + I I+G NVGKS+L N L+ ++ +VV + G T D + I G N VDTAGI Sbjct: 204 VINIGIIGRVNVGKSSLLNALLGQERSVVSSKAGTTIDPVDEMGEIEGRKVNFVDTAGIR 263 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 GK + K ++T + + + + ++D+ + D I + + + +I+V NK Sbjct: 264 RRGKIEGLEKFALNRTREILKRSDIAVLVLDASSPFVELDEKIAGLIDEFKLGVIVVLNK 323 Query: 121 MDTRIAQRNFYEIYS--------LDFKEIVEISAEHDLGTSELHSVIFKIFKQ 165 D IA +++ I LD+ ++ ISA++ +L I K+++ Sbjct: 324 WD--IAHKDYKGIMEDFRLRFKFLDYAPVLTISAKNGRHIQKLEQEILKVYEH 374 >gi|166154045|ref|YP_001654163.1| GTP-binding protein EngA [Chlamydia trachomatis 434/Bu] gi|166154920|ref|YP_001653175.1| GTP-binding protein EngA [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335246|ref|ZP_07223490.1| GTP-binding protein EngA [Chlamydia trachomatis L2tet1] gi|238687413|sp|B0BAF8|DER_CHLTB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|238687426|sp|B0B8S9|DER_CHLT2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|165930033|emb|CAP03516.1| GTP-binding protein [Chlamydia trachomatis 434/Bu] gi|165930908|emb|CAP06470.1| GTP-binding protein [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 490 Score = 204 bits (518), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 142/485 (29%), Positives = 250/485 (51%), Gaps = 31/485 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAI+G PNVGKS+LFNRL ++ +A+V + G TRDRLYG+ I +++DT G+ Sbjct: 3 IAILGRPNVGKSSLFNRLCRRSLAIVNSQEGTTRDRLYGEIRAWDSIIHVIDTGGVDQES 62 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 KQ++ Q A EA ++L ++D + GIT D + L P+I+V NK D++ Sbjct: 63 TDRFQKQIHQQALAAAEEASVLLLVVDIRCGITKQDEELAKRLLPLKKPLILVMNKADSQ 122 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI--ENNKRNE 182 + +E Y L +++ SA HD L I +I + P+ + + E+ +E Sbjct: 123 QDLQRIHEFYGLGISDMIATSASHDKHIDLLLERIRQIAQIPVPSVEEQDVVQEDELPSE 182 Query: 183 ESP-------------KENITSEGKSSVKN----------ISKPLRIAVVGRPNVGKSTL 219 E+ E+++ E S ++ + +PL++A++G PNVGKS++ Sbjct: 183 EAAISLHAFADETLFENESLSQEEASFLEELVAQTATPAPVDRPLKVALIGHPNVGKSSI 242 Query: 220 INRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKS 279 IN LL R +T + G TRD++ +++ N DTAG+RK I S+E + ++ Sbjct: 243 INALLKEERCITDNSPGTTRDNIDVAYTHNNKEYVFIDTAGLRKTKSIKNSVEWMSSSRT 302 Query: 280 MQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD-MVSDKL-NLLQDL 337 +++ + ++++DAT QD RI+ + V+ +NKWD M ++ + +QDL Sbjct: 303 EKAISRTDICLLVIDATQQLSYQDKRILSMIARYKKPHVILVNKWDLMFGVRMEHYVQDL 362 Query: 338 RTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQ 397 R K P IG +I IS + L + ++ +I + T+++TS +N L + Sbjct: 363 R----KMDPYIGQAHILCISAKQRRNLLQIFSAIDDIYTIATTKLSTSLVNKVLASAMQR 418 Query: 398 NPPPTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIR 457 + P I + R+ Y ++P +FL+F + + + Y+ YL N L+ F+L +P Sbjct: 419 HHPQVINGKRLRIYYAIHKTTTPFTFLLFINSNSLLTKPYELYLKNTLKAAFNLYRVPFD 478 Query: 458 MCFQS 462 + +++ Sbjct: 479 LEYKA 483 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/126 (28%), Positives = 65/126 (51%), Gaps = 2/126 (1%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 +RIA++GRPNVGKS+L NRL + + SQ G TRD + + I + DT G+ + Sbjct: 1 MRIAILGRPNVGKSSLFNRLCRRSLAIVNSQEGTTRDRLYGEIRAWDSIIHVIDTGGVDQ 60 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 S T+ +++ ++++ + ++++D KQD + + ++L +NK Sbjct: 61 ES--TDRFQKQIHQQALAAAEEASVLLLVVDIRCGITKQDEELAKRLLPLKKPLILVMNK 118 Query: 324 WDMVSD 329 D D Sbjct: 119 ADSQQD 124 >gi|253827178|ref|ZP_04870063.1| GTP-binding protein EngA [Helicobacter canadensis MIT 98-5491] gi|313141379|ref|ZP_07803572.1| GTP-binding protein engA [Helicobacter canadensis MIT 98-5491] gi|253510584|gb|EES89243.1| GTP-binding protein EngA [Helicobacter canadensis MIT 98-5491] gi|313130410|gb|EFR48027.1| GTP-binding protein engA [Helicobacter canadensis MIT 98-5491] Length = 466 Score = 204 bits (518), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 133/456 (29%), Positives = 228/456 (50%), Gaps = 19/456 (4%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAI+G PN GKS+LFNR K ++A+ G TRD + F ++DT G+ + Sbjct: 7 TIAIMGRPNAGKSSLFNRFCKSRIAITSEIAGTTRDVKKANVSLKDTPFLLLDTGGLDES 66 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + + Q+ + A A LIL+++D K P D I L+KKN I +V NK+D Sbjct: 67 DSLFV--QVTKHSHNAGESADLILYVVDGKMPPNPLDKKIFYTLQKKNPNIFLVVNKIDN 124 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 Q N +E + IS H+ G +L I ++ K+ ++ Sbjct: 125 DKEQSNAWEFSEFGACHLFFISVSHNRGIGKLEESIVRLLKKDSLTQLFNAVD------- 177 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 + S+++ + + I ++GR NVGKS+L+N LLG R + S++G T D V Sbjct: 178 EEESLEEFLETSAIQEKEEVINIGIIGRVNVGKSSLLNALLGQERSVVSSKAGTTIDPVD 237 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + + DTAG+R+ +I E LE+ + ++ + ++ + +++LDA+ PF + D Sbjct: 238 EMGEIEGRKVNFVDTAGIRRRGKI-EGLEKFALNRTREILKRSDIAVLVLDASSPFVELD 296 Query: 304 LRIVDSVFNTGHAVVLALNKWDMV-SDKLNLLQD--LRTKAIKNLPQIGDIYINTISGRT 360 +I + V++ LNKWD+ D +++D LR K + P + TIS + Sbjct: 297 EKIAGLIDEFKLGVIVVLNKWDIAHKDYKGIMEDFRLRFKFLDYAPVL------TISAKN 350 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G + L +L++ + + RI T+ +N +++ +++P P+ + ++ Y TQ ++ P Sbjct: 351 GRHIQKLEQEILKVYEHFSYRIPTAKINEIIKEATMRHPIPSDRGKIVKVYYATQFETKP 410 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 P + PN + SYKRYL+N L+ F SG I Sbjct: 411 PQIALIMNRPNSLHFSYKRYLVNFLQERFDFSGTRI 446 Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 48/173 (27%), Positives = 85/173 (49%), Gaps = 11/173 (6%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI- 60 + I I+G NVGKS+L N L+ ++ +VV + G T D + I G N VDTAGI Sbjct: 197 VINIGIIGRVNVGKSSLLNALLGQERSVVSSKAGTTIDPVDEMGEIEGRKVNFVDTAGIR 256 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 GK + K ++T + + + + ++D+ + D I + + + +I+V NK Sbjct: 257 RRGKIEGLEKFALNRTREILKRSDIAVLVLDASSPFVELDEKIAGLIDEFKLGVIVVLNK 316 Query: 121 MDTRIAQRNFYEIYS--------LDFKEIVEISAEHDLGTSELHSVIFKIFKQ 165 D IA +++ I LD+ ++ ISA++ +L I K+++ Sbjct: 317 WD--IAHKDYKGIMEDFRLRFKFLDYAPVLTISAKNGRHIQKLEQEILKVYEH 367 >gi|126640577|ref|YP_001083561.1| GTP-binding protein EngA [Acinetobacter baumannii ATCC 17978] Length = 399 Score = 204 bits (518), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 121/398 (30%), Positives = 211/398 (53%), Gaps = 32/398 (8%) Query: 72 MNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQRNFY 131 M +Q++ AINEA +I+F++D++AG+ D I LR I +V+NK+D A+ Sbjct: 1 MAEQSKTAINEADIIIFVVDARAGLLASDEQIARELRTLGKKIYLVANKVDGVHAEAALV 60 Query: 132 EIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEESPKENITS 191 E Y L E ++++A H G ++ LE + + +E+P+E+ Sbjct: 61 EFYKLGMGEPLQVAASHGRGVQQM----------------LEDVLQDIPEDENPEEHDKD 104 Query: 192 EGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNH 251 G LR+A++GRPNVGKSTL+NRLLG +R++ Q G TRDS+ I + + Sbjct: 105 TG----------LRLAIIGRPNVGKSTLVNRLLGEDRVVAFDQPGTTRDSIYIPFEREGR 154 Query: 252 PIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVF 311 + DTAG+R+ ++ E +E+ ++ K++Q+++ +V++DA +QDL ++ Sbjct: 155 KYTLIDTAGVRRKGKVDEMIEKFSIVKTLQAMKDAHVVVVVVDAREGIVEQDLHLIGYAL 214 Query: 312 NTGHAVVLALNKWDMVS--DKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMV 369 G A+V+A+NKWD +S D+ D+ + I I+ IS G G+ +L Sbjct: 215 EAGRAMVIAINKWDNMSEYDRKQCKLDVE----RRFDFIPWARIHLISALHGTGVGELYP 270 Query: 370 SVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFLIFCTF 429 S+ + +++ + L L Q+ PPT+ R +++Y +PP+ +I Sbjct: 271 SIHRAYESANLKVSPAKLTQILNDATDQHQPPTVQGRRIKMRYAHMGGQNPPTIVIHGNK 330 Query: 430 PNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 +K P Y+RYL N R + L G P+++ F++S+NP+ Sbjct: 331 VDKTPADYRRYLENVFRKVYKLEGTPVKIEFKTSENPF 368 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 53/175 (30%), Positives = 86/175 (49%), Gaps = 21/175 (12%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI-ADG 63 +AI+G PNVGKSTL NRL+ + V + PG TRD +Y G + ++DTAG+ G Sbjct: 109 LAIIGRPNVGKSTLVNRLLGEDRVVAFDQPGTTRDSIYIPFEREGRKYTLIDTAGVRRKG 168 Query: 64 KNCSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 K + ++ + +T A+ +AH+++ ++D++ GI D + + + ++I NK D Sbjct: 169 KVDEMIEKFSIVKTLQAMKDAHVVVVVVDAREGIVEQDLHLIGYALEAGRAMVIAINKWD 228 Query: 123 TRIAQRNFYEIYSLDFKEIVE-------------ISAEHDLGTSELHSVIFKIFK 164 N E K VE ISA H G EL+ I + ++ Sbjct: 229 ------NMSEYDRKQCKLDVERRFDFIPWARIHLISALHGTGVGELYPSIHRAYE 277 >gi|332711902|ref|ZP_08431832.1| ribosome-associated GTPase EngA [Lyngbya majuscula 3L] gi|332349230|gb|EGJ28840.1| ribosome-associated GTPase EngA [Lyngbya majuscula 3L] Length = 463 Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 138/475 (29%), Positives = 227/475 (47%), Gaps = 49/475 (10%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A++G PNVGKSTL NRL A+V N PG+TRDR Y A + +VDT G+ Sbjct: 6 VAVIGRPNVGKSTLVNRLAGVTDAIVHNQPGVTRDRTYRAAFWQDRDYLVVDTGGLVFDD 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N + +Q A+ EA + ++D +AG T D AI +LR +N P+++ NK ++ Sbjct: 66 NTEFLPLIREQAMAALAEASAAVLVVDGQAGPTAGDEAIAQWLRIQNTPVVLAVNKCESP 125 Query: 125 ----IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 I F+E L+ E +SA H GT EL + PN Sbjct: 126 QQGIILASQFWE---LNLGEPFPVSAIHGNGTGELLEKLVTYL----PN----------- 167 Query: 181 NEESPKENITSEGKSSVKNISK--PLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 V NI + +++A+VGRPNVGKS+L+N L G NR + SG T Sbjct: 168 ----------------VDNIPEIPEIKVAIVGRPNVGKSSLLNTLTGENRSIVSPISGTT 211 Query: 239 RDSVSISWNWKNHP--------IEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTI 290 RD++ + P + DTAG+RK +T E + ++ +++R + + Sbjct: 212 RDAIDMVVQRSADPEKGTEAQTYRLIDTAGIRKKKNVTYGPEFFGINRAFKAIRRSDVVL 271 Query: 291 VLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGD 350 +++DA +QD ++ + + G A V+ +NKWD + + D + + L I Sbjct: 272 LVIDAIDGVTEQDQKLAGRIADEGRAAVIVVNKWDAIEKDSYTIYDYQKQVKDRLSFIEW 331 Query: 351 IYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKT-QLQNPPPTIFNRYNR 409 I +S TG+ ++ ++ V R++TS +N LQ+ PP R + Sbjct: 332 AEIIFVSAMTGKRVETILDLVDTAANQHGRRVSTSVINEVLQEAVSWYTPPTNRQGRQGK 391 Query: 410 LKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 + Y TQ+++ PP+ +F P + E+Y+RY+ + R +G P+R+ ++ K Sbjct: 392 IYYGTQVRTKPPTIALFVNDPKRFKENYRRYIERQFRQQLDFTGTPLRLLWRGKK 446 >gi|116328637|ref|YP_798357.1| GTP-binding protein EngA [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116330706|ref|YP_800424.1| GTP-binding protein EngA [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|122281540|sp|Q04TV4|DER_LEPBJ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|122283577|sp|Q04ZS1|DER_LEPBL RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|116121381|gb|ABJ79424.1| GTPase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116124395|gb|ABJ75666.1| GTPase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 487 Score = 203 bits (517), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 141/475 (29%), Positives = 243/475 (51%), Gaps = 27/475 (5%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRD----RLYGQAIINGVIFNIVDT 57 I ++IVG NVGKSTLFN L+KKK+A+ ++PG+TRD R+Y + + F + DT Sbjct: 27 IPVVSIVGRQNVGKSTLFNSLLKKKLAITEDYPGVTRDVLSARVYQEE--KDLDFYLCDT 84 Query: 58 AGIADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKK----NIP 113 G+ S+++ + + +NE+ +I+FL+D K +T DH + +LRKK + P Sbjct: 85 PGLDIENPDSLSQSILEAAYRQLNESDVIIFLLD-KNLVTVADHTLLDYLRKKYGPVDKP 143 Query: 114 IIIVSNKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKI--FKQKYPNHP 171 II NK D + + + E Y + E++ ISA G L ++ KI F P Sbjct: 144 IIYCVNKADKELDEFDLEEFYRMGLPEVLPISAT---GRKNLGLLLEKIKFFLSSKPGKV 200 Query: 172 -LEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLL 230 +E I +K+ + P + R+A+VG+PN GKS+L+N + GY R + Sbjct: 201 WIEKISASKKKDAQP---------LPLAEEDYEFRLAIVGKPNSGKSSLLNAVCGYERAV 251 Query: 231 TGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTI 290 +G TRDSV + N + + DTAG+RK S+ E+LE + +++++++ + + I Sbjct: 252 VSDVAGTTRDSVDTLLEFGNRKLLLTDTAGIRKHSKTAEALEYYSYQRTLKAIESSDLVI 311 Query: 291 VLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLN-LLQDLRTKAIKNLPQIG 349 LLDA F D +I + G ++A+NKWD + DK + ++ + K P + Sbjct: 312 HLLDAKKGFGDFDKKITSLLQEKGKPFLIAVNKWDSIEDKTDKTFREYKEKLYSRFPLLN 371 Query: 350 DIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNR 409 ++ I TIS + L+ ++ + +++TS LN L+ Q ++ + Sbjct: 372 EVPIVTISATERLRVQKLIDLSFDLASRSRRKVSTSELNKNLKNWMSQAGRSFSAHQPPK 431 Query: 410 LKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 + Y TQ+ +SP ++F + +L +L + L GIP+R+ F+S + Sbjct: 432 MLYCTQVSTSPFHLILFVNHVEYFKSNLISFLKKKLTEAYDLQGIPVRLEFRSDR 486 >gi|24214003|ref|NP_711484.1| GTP-binding protein EngA [Leptospira interrogans serovar Lai str. 56601] gi|73919334|sp|Q8F6K1|DER_LEPIN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|24194868|gb|AAN48502.1| GTP-binding protein EngA [Leptospira interrogans serovar Lai str. 56601] Length = 489 Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 143/483 (29%), Positives = 244/483 (50%), Gaps = 43/483 (8%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRD----RLYGQAIINGVIFNIVDT 57 I ++IVG NVGKSTLFN L+KKK+A+ ++PG+TRD R+Y + + F + DT Sbjct: 29 IPVVSIVGRQNVGKSTLFNSLLKKKLAITEDYPGVTRDVLSARIYQEE--KDLDFYLCDT 86 Query: 58 AGIADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKK----NIP 113 G+ S+++ + + + E+ +I+FL+D K IT DH + ++LR++ N P Sbjct: 87 PGLDIENPDSLSQTILETAYRQLRESDVIVFLLD-KNLITTADHGLLNYLRREDKVANKP 145 Query: 114 IIIVSNKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKI---FKQKYPNH 170 II NK D + + + E Y + E++ ISA +G L ++ KI K K Sbjct: 146 IIYCVNKADKELDEFDLEEFYRMGLSEVLPISA---IGRKNLGLLLEKIQFFLKDKPGKV 202 Query: 171 PLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLL 230 +E I +K+ E P + R+A+VG+PN GKS+L+N + GY R + Sbjct: 203 WIEKISASKKKEAQP---------LPLAEEDYEFRLAIVGKPNSGKSSLLNAICGYERAV 253 Query: 231 TGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTI 290 +G TRDS+ + + + + DTAG+RK S+ E+LE + +++++++ + + I Sbjct: 254 VSDVAGTTRDSIDTLLEFGDRRLLLTDTAGIRKQSKTAEALEFYSYQRTIKAIESSDLVI 313 Query: 291 VLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLN-LLQDLRTKAIKNLPQIG 349 LLDA F D +I + G +LA+NKWD + DK + ++ + K P + Sbjct: 314 HLLDAKKGFGDFDKKITSLLQEKGKPFLLAVNKWDSIEDKTDKTFKEYKEKLYSRFPLLN 373 Query: 350 DIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLN----SWL----QKTQLQNPPP 401 ++ I TIS + LM ++ +++TS LN +W+ + PP Sbjct: 374 EVPIITISATERLRVQKLMDLSFDLASRSHRKVSTSELNKNLKNWMGLAGRSFSAHQPP- 432 Query: 402 TIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 ++ Y TQ+ +SP ++F + +L +L + L GIPIR+ F+ Sbjct: 433 -------KMLYCTQVSTSPFHLILFVNHVEYFKSNLVSFLKKKLTETYDLQGIPIRLEFR 485 Query: 462 SSK 464 S + Sbjct: 486 SDR 488 >gi|311110809|ref|ZP_07712206.1| ribosome-associated GTPase EngA [Lactobacillus gasseri MV-22] gi|311065963|gb|EFQ46303.1| ribosome-associated GTPase EngA [Lactobacillus gasseri MV-22] Length = 389 Score = 203 bits (516), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 118/413 (28%), Positives = 203/413 (49%), Gaps = 30/413 (7%) Query: 52 FNIVDTAGIADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKN 111 F ++DT GI + I +Q+ Q E+AI+EA +I+ L D +T D I L + Sbjct: 7 FILIDTGGIT-LDSGEIEEQIKAQAEIAIDEADVIVMLGDVTQHMTNMDETIAKMLYRTK 65 Query: 112 IPIIIVSNKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHP 171 PII+ NK D + + Y+ YSL + + +S H G +L I F K H Sbjct: 66 KPIILAVNKADNPEQRTDIYDFYSLGLGDPIPVSGSHGTGMGDLLDAIVGEFGDKANQHE 125 Query: 172 LEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLT 231 + I R +V+GRPNVGKS+L+N +LG R++ Sbjct: 126 DDSI-----------------------------RFSVIGRPNVGKSSLVNAILGEQRVIV 156 Query: 232 GSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIV 291 + G TRD++ ++ I DTAG+R+ ++ E E+ +V +++ ++ + T++ Sbjct: 157 SNIEGTTRDAIDTTFTNDGQKYTIVDTAGIRRRGKVYEKTEKYSVLRAISAIEESDITLL 216 Query: 292 LLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDI 351 +LDA+ +QD + + G V++ +NKWD+ ++D + + Sbjct: 217 VLDASTGIREQDKHVAGYAHDAGRGVIIVVNKWDLPKKYSTSMKDFEDTIRQEFQYLDYA 276 Query: 352 YINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLK 411 I +S +TG+ + D++ V E++ RI +S LN L + P P + + R+ Sbjct: 277 PIVFVSAKTGQRVPDILKLVKEVHDNQTRRIKSSVLNDLLLEATRITPTPLVNGKRLRIY 336 Query: 412 YITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 Y+TQ+ +PP+F++F P + SY+R+LIN+LR NF G PI++ + K Sbjct: 337 YMTQVAVTPPTFVVFVNDPELLHFSYQRFLINQLRQNFDFVGTPIKILARKRK 389 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 51/178 (28%), Positives = 86/178 (48%), Gaps = 19/178 (10%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 +++G PNVGKS+L N ++ ++ +V N G TRD + +G + IVDTAGI + Sbjct: 132 SVIGRPNVGKSSLVNAILGEQRVIVSNIEGTTRDAIDTTFTNDGQKYTIVDTAGIR--RR 189 Query: 66 CSIAKQMNDQTEL----AINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 + ++ + L AI E+ + L ++D+ GI D + + +IIV NK Sbjct: 190 GKVYEKTEKYSVLRAISAIEESDITLLVLDASTGIREQDKHVAGYAHDAGRGVIIVVNKW 249 Query: 122 DT----RIAQRNF-----YEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNH 170 D + ++F E LD+ IV +SA+ T + I K+ K+ + N Sbjct: 250 DLPKKYSTSMKDFEDTIRQEFQYLDYAPIVFVSAK----TGQRVPDILKLVKEVHDNQ 303 >gi|45658262|ref|YP_002348.1| GTP-binding protein EngA [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|73919333|sp|Q72PQ1|DER_LEPIC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|45601504|gb|AAS70985.1| GTP-binding protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 489 Score = 203 bits (516), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 143/483 (29%), Positives = 244/483 (50%), Gaps = 43/483 (8%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRD----RLYGQAIINGVIFNIVDT 57 I ++IVG NVGKSTLFN L+KKK+A+ ++PG+TRD R+Y + + F + DT Sbjct: 29 IPVVSIVGRQNVGKSTLFNSLLKKKLAITEDYPGVTRDVLSARIYQEE--KDLDFYLCDT 86 Query: 58 AGIADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKK----NIP 113 G+ S+++ + + + E+ +I+FL+D K IT DH + ++LR++ N P Sbjct: 87 PGLDIENPDSLSQTILETAYGQLRESDVIVFLLD-KNLITTADHGLLNYLRREDKVANKP 145 Query: 114 IIIVSNKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKI---FKQKYPNH 170 II NK D + + + E Y + E++ ISA +G L ++ KI K K Sbjct: 146 IIYCVNKADKELDEFDLEEFYRMGLSEVLPISA---IGRKNLGLLLEKIQFFLKDKPGKV 202 Query: 171 PLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLL 230 +E I +K+ E P + R+A+VG+PN GKS+L+N + GY R + Sbjct: 203 WIEKISASKKKEAQP---------LPLAEEDYEFRLAIVGKPNSGKSSLLNAICGYERAV 253 Query: 231 TGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTI 290 +G TRDS+ + + + + DTAG+RK S+ E+LE + +++++++ + + I Sbjct: 254 VSDVAGTTRDSIDTLLEFGDRRLLLTDTAGIRKQSKTAEALEFYSYQRTIKAIESSDLVI 313 Query: 291 VLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLN-LLQDLRTKAIKNLPQIG 349 LLDA F D +I + G +LA+NKWD + DK + ++ + K P + Sbjct: 314 HLLDAKKGFGDFDKKITSLLQEKGKPFLLAVNKWDSIEDKTDKTFKEYKEKLYSRFPLLN 373 Query: 350 DIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLN----SWL----QKTQLQNPPP 401 ++ I TIS + LM ++ +++TS LN +W+ + PP Sbjct: 374 EVPIITISATERLRVQKLMDLSFDLASRSHRKVSTSELNKNLKNWMGLAGRSFSAHQPP- 432 Query: 402 TIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 ++ Y TQ+ +SP ++F + +L +L + L GIPIR+ F+ Sbjct: 433 -------KMLYCTQVSTSPFHLILFVNHVEYFKSNLVSFLKKKLTETYDLQGIPIRLEFR 485 Query: 462 SSK 464 S + Sbjct: 486 SDR 488 >gi|15605436|ref|NP_220222.1| GTP-binding protein EngA [Chlamydia trachomatis D/UW-3/CX] gi|255311532|ref|ZP_05354102.1| GTP-binding protein EngA [Chlamydia trachomatis 6276] gi|255317833|ref|ZP_05359079.1| GTP-binding protein EngA [Chlamydia trachomatis 6276s] gi|255349095|ref|ZP_05381102.1| GTP-binding protein EngA [Chlamydia trachomatis 70] gi|255503632|ref|ZP_05382022.1| GTP-binding protein EngA [Chlamydia trachomatis 70s] gi|255507311|ref|ZP_05382950.1| GTP-binding protein EngA [Chlamydia trachomatis D(s)2923] gi|8134429|sp|O84709|DER_CHLTR RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|3329158|gb|AAC68298.1| GTPase/GTP-binding protein [Chlamydia trachomatis D/UW-3/CX] gi|289525747|emb|CBJ15228.1| GTP-binding protein [Chlamydia trachomatis Sweden2] gi|296435319|gb|ADH17497.1| GTP-binding protein EngA [Chlamydia trachomatis E/150] gi|296436247|gb|ADH18421.1| GTP-binding protein EngA [Chlamydia trachomatis G/9768] gi|296437176|gb|ADH19346.1| GTP-binding protein EngA [Chlamydia trachomatis G/11222] gi|296438107|gb|ADH20268.1| GTP-binding protein EngA [Chlamydia trachomatis G/11074] gi|296439036|gb|ADH21189.1| GTP-binding protein EngA [Chlamydia trachomatis E/11023] gi|297140608|gb|ADH97366.1| GTP-binding protein EngA [Chlamydia trachomatis G/9301] gi|297748834|gb|ADI51380.1| GTP-binding protein [Chlamydia trachomatis D-EC] gi|297749714|gb|ADI52392.1| GTP-binding protein [Chlamydia trachomatis D-LC] Length = 490 Score = 203 bits (516), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 142/486 (29%), Positives = 244/486 (50%), Gaps = 33/486 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAI+G PNVGKS+LFNRL K+ +A+V + G TRDRLYG+ I +++DT G+ Sbjct: 3 IAILGRPNVGKSSLFNRLCKRSLAIVNSQEGTTRDRLYGEIRAWDSIIHVIDTGGVDQES 62 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 KQ++ Q A EA ++L ++D + GIT D + L P+I+V NK D++ Sbjct: 63 TDRFQKQIHQQALAAAEEASVLLLVVDIRCGITKQDEELAKRLLPLKKPLILVMNKADSQ 122 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHD--------------------------LGTSELHSV 158 + +E Y L +++ SA HD + EL S Sbjct: 123 QDLQRIHEFYGLGISDMIATSASHDKHIDLLLERIRQIAQIPVPSVEEQDAVQEDELPSE 182 Query: 159 IFKIFKQKYPNHPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKST 218 I + + L E+ + E S E + ++ + + +PL++A++G PNVGKS+ Sbjct: 183 EAAISLHAFADETLFENESLSQEEASFLEELVAQTATPAP-VDRPLKVALIGHPNVGKSS 241 Query: 219 LINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKK 278 +IN LL R +T + G TRD++ +++ N DTAG+RK I S+E + + Sbjct: 242 IINALLKEERCITDNSPGTTRDNIDVAYTHNNKEYVFIDTAGLRKTKSIKNSVEWMSSSR 301 Query: 279 SMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD-MVSDKL-NLLQD 336 + +++ + ++++DAT QD RI+ + V+ +NKWD M ++ + +QD Sbjct: 302 TEKAISRTDICLLVIDATQQLSYQDKRILSMIARYKKPHVILVNKWDLMFGVRMEHYVQD 361 Query: 337 LRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQL 396 LR K P IG I IS + L + ++ +I + T+++TS +N L Sbjct: 362 LR----KMDPYIGQARILCISAKQRRNLLQIFSAIDDIYTIATTKLSTSLVNKVLASAMQ 417 Query: 397 QNPPPTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 ++ P I + R+ Y ++P +FL+F + + + Y+ YL N L+ F+L +P Sbjct: 418 RHHPQVINGKRLRIYYAIHKTTTPFTFLLFINSNSLLTKPYELYLKNTLKAAFNLYRVPF 477 Query: 457 RMCFQS 462 + +++ Sbjct: 478 DLEYKA 483 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/126 (28%), Positives = 65/126 (51%), Gaps = 2/126 (1%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 +RIA++GRPNVGKS+L NRL + + SQ G TRD + + I + DT G+ + Sbjct: 1 MRIAILGRPNVGKSSLFNRLCKRSLAIVNSQEGTTRDRLYGEIRAWDSIIHVIDTGGVDQ 60 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 S T+ +++ ++++ + ++++D KQD + + ++L +NK Sbjct: 61 ES--TDRFQKQIHQQALAAAEEASVLLLVVDIRCGITKQDEELAKRLLPLKKPLILVMNK 118 Query: 324 WDMVSD 329 D D Sbjct: 119 ADSQQD 124 >gi|12322014|gb|AAG51052.1|AC069473_14 GTPase, putative; 34281-30152 [Arabidopsis thaliana] Length = 659 Score = 202 bits (515), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 144/506 (28%), Positives = 250/506 (49%), Gaps = 69/506 (13%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 ++ +AIVG PNVGKS LFNRLV + A+V + PG+TRDRLYG++ F +VDT G+ Sbjct: 153 LLQRVAIVGRPNVGKSALFNRLVGENRAIVVDEPGVTRDRLYGRSYWGDQEFVVVDTGGV 212 Query: 61 A--------------------------DGKNCSIAKQ---MNDQTELAINEAHLILFLID 91 + +IA+ + Q A++E+ +I+F++D Sbjct: 213 MTVSKSPSGVMEELNVSTTIGMEGIPLSSREAAIARMPSMIEKQATAAVDESAVIIFVVD 272 Query: 92 SKAGITPYDHAITSFLRK--KNIPIIIVSNKMDT-RIAQRNFYEIYSLDFKEIVEISAEH 148 +AG + D I +LRK + II+ NK ++ R E +SL F I ISA Sbjct: 273 GQAGPSGADVEIADWLRKYYSHKYIILAVNKCESPRKGLMQASEFWSLGFTPI-PISALS 331 Query: 149 DLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAV 208 GT EL ++ +++ EE + I + IA+ Sbjct: 332 GTGTGELLDLVCSGL--------IKLEIMENIEEEEEENYIPA--------------IAI 369 Query: 209 VGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKN-HPIEIFDTAGMRKPSRI 267 +GRPNVGKS+++N L+ +R + SG TRD++ + + + DTAG+RK S + Sbjct: 370 IGRPNVGKSSILNALVREDRTIVSPVSGTTRDAIDAEFTGPDGEKFRLIDTAGIRKKSSV 429 Query: 268 TES---LEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 S E +V ++ +++R + ++++A +QDL+I + + G ++ +NKW Sbjct: 430 ASSGSTTEAMSVNRAFRAIRRSDVVALVIEAMACITEQDLKIAERIEREGKGCLVVVNKW 489 Query: 325 DMVSDK-----LNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWK 379 D + +K + D+R K +++L +Y I TG +D+++V+ + K Sbjct: 490 DTIPNKNQETAAHYEDDVREK-LRSLKWAPIVYSTAI---TGHSVDNIVVAAATVQKERS 545 Query: 380 TRITTSYLNSWLQKT-QLQNPPPTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYK 438 R++T+ LN +++ ++PP T + R+ Y TQ PP+F+ F ++Y+ Sbjct: 546 RRLSTAILNQVIREAVAFKSPPRTRGGKRGRVYYCTQAAIRPPTFVFFVNDAKLFSDTYR 605 Query: 439 RYLINRLRINFSLSGIPIRMCFQSSK 464 RY+ +LR + +G PIR+ ++S K Sbjct: 606 RYMEKQLRTDAGFAGTPIRLLWRSRK 631 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 63/212 (29%), Positives = 97/212 (45%), Gaps = 38/212 (17%) Query: 192 EGKSSVKNISKPL-RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKN 250 +GK KN+ L R+A+VGRPNVGKS L NRL+G NR + + G+TRD + W + Sbjct: 142 KGKRLAKNVKHLLQRVAIVGRPNVGKSALFNRLVGENRAIVVDEPGVTRDRLYGRSYWGD 201 Query: 251 HPIEIFDTAGM----RKPSRITESLEQKTV-----------------------KKSMQSV 283 + DT G+ + PS + E L T K++ +V Sbjct: 202 QEFVVVDTGGVMTVSKSPSGVMEELNVSTTIGMEGIPLSSREAAIARMPSMIEKQATAAV 261 Query: 284 RTCETTIVLLDATIPFEKQDLRIVDSV--FNTGHAVVLALNKWDMVSDKLNLLQDLRTKA 341 I ++D D+ I D + + + ++LA+NK + S + L+Q + Sbjct: 262 DESAVIIFVVDGQAGPSGADVEIADWLRKYYSHKYIILAVNKCE--SPRKGLMQASEFWS 319 Query: 342 IKNLPQIGDIYINTISGRTGEG-LDDLMVSVL 372 + P I I+ +SG TG G L DL+ S L Sbjct: 320 LGFTP----IPISALSG-TGTGELLDLVCSGL 346 >gi|302830428|ref|XP_002946780.1| hypothetical protein VOLCADRAFT_56252 [Volvox carteri f. nagariensis] gi|300267824|gb|EFJ52006.1| hypothetical protein VOLCADRAFT_56252 [Volvox carteri f. nagariensis] Length = 480 Score = 202 bits (515), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 141/487 (28%), Positives = 250/487 (51%), Gaps = 45/487 (9%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPG--ITRDRLYGQAIINGVIFNIVDTAGI---A 61 +VG PNVGKS LFNRL+++++A+V + P +TRD G+A + ++F DT+G+ Sbjct: 1 LVGRPNVGKSALFNRLLRRRVALVYDTPNSHVTRDYQEGRAQLGDLVFRAADTSGLEPRG 60 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIP---IIIVS 118 SI + T + + HL L ++D+K G+ P D + +L +++P +++V+ Sbjct: 61 GSWRGSINARATSITTALLRQCHLTLLVLDAKDGVLPADEEVAQWL-LRHVPRDQVLVVA 119 Query: 119 NKMDTRIAQ----RNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEM 174 NK + A+ + Y+ Y L F E V +SA G ++L++ + Q + + E Sbjct: 120 NKAEGARARDEMPQTVYDCYRLGFGEPVAVSAATGEGLADLYTAL-----QPHIDEVSEQ 174 Query: 175 IENNKRNEESPKENITSE-GKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGS 233 + + + + +S G+ V L++ ++G PN GKSTL+NRLLG R LTG Sbjct: 175 LAAAAAAAAADRPSSSSAPGRGGV------LKLGIMGLPNAGKSTLLNRLLGEERALTGP 228 Query: 234 QSGITRDSVSISWNWKNHPIEIFDTAGM----RKPSRITESLEQKTVKKSMQSVRTCETT 289 + G+TRD+V W + N P+E+ DTAG R +L ++ +S+ V Sbjct: 229 EPGLTRDAVRAMWMYGNQPVELIDTAGWIGVGRTARWAVAALSRQCTLRSLAQVHVAVLV 288 Query: 290 IV---LLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDK-LNLLQDLR-----TK 340 + L + +++L + V G A+VL NK D++S + L +R ++ Sbjct: 289 VDVERALRSNRVLARRELSLASHVIREGKALVLVANKMDVLSPQDRTLYGKVRNPYGISR 348 Query: 341 AIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQK--TQLQN 398 A LP + + +S R G GLD++M V + + W RI T+ LN+++ K ++ Sbjct: 349 ACPALPI--SLPVVEVSARDGTGLDEIMPVVSKAYEAWNKRIGTARLNNFMAKLTARMAG 406 Query: 399 PPPTIFNRYNRLKYITQIQSSPPSFLIFC--TFPNKIPESYKRYLINRLRINFSLSGIPI 456 T N R++Y+TQI++ PP+F+ F T + + +L +++R G+P+ Sbjct: 407 GGGTEAN-LRRIRYVTQIKARPPTFVAFLRGTASQPVSGDFSAFLAHQIREVLGFPGVPL 465 Query: 457 RMCFQSS 463 R+ F+ + Sbjct: 466 RIWFRCA 472 Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 49/185 (26%), Positives = 88/185 (47%), Gaps = 22/185 (11%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAG-I 60 + + I+G PN GKSTL NRL+ ++ A+ G PG+TRD + + ++DTAG I Sbjct: 198 VLKLGIMGLPNAGKSTLLNRLLGEERALTGPEPGLTRDAVRAMWMYGNQPVELIDTAGWI 257 Query: 61 ADGKNC--SIAKQMNDQTELAINEAHLILF------LIDSKAGITPYDHAITSFLRKKNI 112 G+ ++A T ++ + H+ + + S + + ++ S + ++ Sbjct: 258 GVGRTARWAVAALSRQCTLRSLAQVHVAVLVVDVERALRSNRVLARRELSLASHVIREGK 317 Query: 113 PIIIVSNKMDTRIAQ--------RNFYEIY----SLDFK-EIVEISAEHDLGTSELHSVI 159 +++V+NKMD Q RN Y I +L +VE+SA G E+ V+ Sbjct: 318 ALVLVANKMDVLSPQDRTLYGKVRNPYGISRACPALPISLPVVEVSARDGTGLDEIMPVV 377 Query: 160 FKIFK 164 K ++ Sbjct: 378 SKAYE 382 >gi|297829768|ref|XP_002882766.1| EMB2738 [Arabidopsis lyrata subsp. lyrata] gi|297328606|gb|EFH59025.1| EMB2738 [Arabidopsis lyrata subsp. lyrata] Length = 661 Score = 202 bits (515), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 144/506 (28%), Positives = 247/506 (48%), Gaps = 69/506 (13%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 ++ +AIVG PNVGKS LFNRLV + A+V + PG+TRDRLYG++ F +VDT G+ Sbjct: 155 LLQRVAIVGRPNVGKSALFNRLVGENRAIVVDEPGVTRDRLYGRSYWGDQEFVVVDTGGV 214 Query: 61 A--------------------------DGKNCSIAKQ---MNDQTELAINEAHLILFLID 91 + +IA+ + Q A++E+ +I+F++D Sbjct: 215 MTVSKSPSGVMEELNVSTTIGMEGIPLSSREAAIARMPSMIEKQATAAVDESAVIIFVVD 274 Query: 92 SKAGITPYDHAITSFLRK--KNIPIIIVSNKMDT-RIAQRNFYEIYSLDFKEIVEISAEH 148 +AG + D I +LRK + II+ NK ++ R E +SL F I ISA Sbjct: 275 GQAGSSGADVEIADWLRKYYSHKYIILAVNKCESPRKGLMQASEFWSLGFTPI-PISALS 333 Query: 149 DLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAV 208 GT EL ++ K I + + P IA+ Sbjct: 334 GTGTGELLDLVCSGLN---------------------KIEIMENIEEEEEENYIPA-IAI 371 Query: 209 VGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKN-HPIEIFDTAGMRKPSRI 267 +GRPNVGKS+++N L+ +R + SG TRD++ + + + DTAG+RK S + Sbjct: 372 IGRPNVGKSSILNALVREDRTIVSPVSGTTRDAIDAEFTGPDGEKFRLIDTAGIRKKSSV 431 Query: 268 TES---LEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 S E +V ++ +++R + ++++A +QDL+I + + G ++ +NKW Sbjct: 432 ASSGSTTEAMSVNRAFRAIRRSDVVALVIEAMACITEQDLKIAERIEREGKGCLVVVNKW 491 Query: 325 DMVSDK-----LNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWK 379 D + +K + D+R K +++L +Y I TG +D+++V+ + K Sbjct: 492 DTIPNKNQETAAHYEDDVREK-LRSLKWAPIVYSTAI---TGHSVDNIVVAAATVQKERS 547 Query: 380 TRITTSYLNSWLQKT-QLQNPPPTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYK 438 R++T+ LN +++ ++PP T + R+ Y TQ PP+F+ F ++Y+ Sbjct: 548 RRLSTAILNQVIREAVAFKSPPRTRGGKRGRVYYCTQAAIRPPTFVFFVNDAKLFSDTYR 607 Query: 439 RYLINRLRINFSLSGIPIRMCFQSSK 464 RY+ +LR + +G PIR+ ++S K Sbjct: 608 RYMEKQLRTDAGFAGTPIRLLWRSRK 633 >gi|9294105|dbj|BAB01956.1| GTP-binding protein-like [Arabidopsis thaliana] Length = 537 Score = 202 bits (515), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 144/506 (28%), Positives = 250/506 (49%), Gaps = 69/506 (13%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 ++ +AIVG PNVGKS LFNRLV + A+V + PG+TRDRLYG++ F +VDT G+ Sbjct: 31 LLQRVAIVGRPNVGKSALFNRLVGENRAIVVDEPGVTRDRLYGRSYWGDQEFVVVDTGGV 90 Query: 61 A--------------------------DGKNCSIAKQ---MNDQTELAINEAHLILFLID 91 + +IA+ + Q A++E+ +I+F++D Sbjct: 91 MTVSKSPSGVMEELNVSTTIGMEGIPLSSREAAIARMPSMIEKQATAAVDESAVIIFVVD 150 Query: 92 SKAGITPYDHAITSFLRK--KNIPIIIVSNKMDT-RIAQRNFYEIYSLDFKEIVEISAEH 148 +AG + D I +LRK + II+ NK ++ R E +SL F I ISA Sbjct: 151 GQAGPSGADVEIADWLRKYYSHKYIILAVNKCESPRKGLMQASEFWSLGFTPI-PISALS 209 Query: 149 DLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAV 208 GT EL ++ +++ EE + I + IA+ Sbjct: 210 GTGTGELLDLVCSGL--------IKLEIMENIEEEEEENYIPA--------------IAI 247 Query: 209 VGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKN-HPIEIFDTAGMRKPSRI 267 +GRPNVGKS+++N L+ +R + SG TRD++ + + + DTAG+RK S + Sbjct: 248 IGRPNVGKSSILNALVREDRTIVSPVSGTTRDAIDAEFTGPDGEKFRLIDTAGIRKKSSV 307 Query: 268 TES---LEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 S E +V ++ +++R + ++++A +QDL+I + + G ++ +NKW Sbjct: 308 ASSGSTTEAMSVNRAFRAIRRSDVVALVIEAMACITEQDLKIAERIEREGKGCLVVVNKW 367 Query: 325 DMVSDK-----LNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWK 379 D + +K + D+R K +++L +Y I TG +D+++V+ + K Sbjct: 368 DTIPNKNQETAAHYEDDVREK-LRSLKWAPIVYSTAI---TGHSVDNIVVAAATVQKERS 423 Query: 380 TRITTSYLNSWLQKT-QLQNPPPTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYK 438 R++T+ LN +++ ++PP T + R+ Y TQ PP+F+ F ++Y+ Sbjct: 424 RRLSTAILNQVIREAVAFKSPPRTRGGKRGRVYYCTQAAIRPPTFVFFVNDAKLFSDTYR 483 Query: 439 RYLINRLRINFSLSGIPIRMCFQSSK 464 RY+ +LR + +G PIR+ ++S K Sbjct: 484 RYMEKQLRTDAGFAGTPIRLLWRSRK 509 >gi|148244763|ref|YP_001219457.1| Era/TrmE family GTP-binding protein [Candidatus Vesicomyosocius okutanii HA] gi|146326590|dbj|BAF61733.1| GTP-binding protein, Era/TrmE family [Candidatus Vesicomyosocius okutanii HA] Length = 465 Score = 202 bits (515), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 138/469 (29%), Positives = 228/469 (48%), Gaps = 35/469 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIING---VIFNIVDTAGIA 61 I ++G PNVGKSTLFNRL + A+V + G+TRDR Y + ++N I+DT G Sbjct: 6 ICLIGRPNVGKSTLFNRLSHSRQALVSDFAGLTRDRQYAKVLLNDDTQTFTTIIDTGGFT 65 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 + N + + DQ A+ E+ +I F+++S+ G+ D I S LR+ II+V NK Sbjct: 66 NKVNL-VDSGIQDQILSALEESDVIYFILNSRDGVISLDLEIASHLRRLKKNIILVCNKA 124 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 + + E + L + + ISAEH G L + + Sbjct: 125 EG-LNPTLTTEFFELGLGKPILISAEHGQGIDNLINTTLPLL------------------ 165 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 PK + E + + + IAV+G+PNVGKSTLIN +L R++ G TRDS Sbjct: 166 ---PKVTVNEE-------VVEGITIAVLGKPNVGKSTLINHILREKRVIAIDLPGTTRDS 215 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 + I + K + DTAG+R+ + E +E ++ K++ ++ I++LDA K Sbjct: 216 IYIPFERKGQQYTLIDTAGIRRKNSTHEKIEIFSIIKTINALERAHVVILVLDAQTGVTK 275 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTG 361 QD ++ + + A+++ +NKWD + D Q+++ K L I ++ IS G Sbjct: 276 QDASLLGMILDKDKALLIVINKWDGLDDYQK--QEVKRKLEVKLSFISYTSVHYISALHG 333 Query: 362 EGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 G+D L + + + + +TS LN L K + PP + R ++KY+ Q P Sbjct: 334 SGVDKLFTPINQSYQDACKQHSTSILNKILDKANHGHQPPLVKGRRLKIKYVNQTNIFPL 393 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 + +P +Y+RYL + L+ IPI++ ++S NP+ K Sbjct: 394 TLAFHGNHLQNVPNAYERYLKKFFINSLKLTNIPIKIEYKSGNNPFKNK 442 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 51/186 (27%), Positives = 95/186 (51%), Gaps = 19/186 (10%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIA++G PNVGKSTL N ++++K + + PG TRD +Y G + ++DTAGI Sbjct: 179 TIAVLGKPNVGKSTLINHILREKRVIAIDLPGTTRDSIYIPFERKGQQYTLIDTAGIRRK 238 Query: 64 KNC-------SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIII 116 + SI K +N A+ AH+++ ++D++ G+T D ++ + K+ ++I Sbjct: 239 NSTHEKIEIFSIIKTIN-----ALERAHVVILVLDAQTGVTKQDASLLGMILDKDKALLI 293 Query: 117 VSNKMD-------TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPN 169 V NK D + ++ ++ + + + ISA H G +L + I + ++ Sbjct: 294 VINKWDGLDDYQKQEVKRKLEVKLSFISYTSVHYISALHGSGVDKLFTPINQSYQDACKQ 353 Query: 170 HPLEMI 175 H ++ Sbjct: 354 HSTSIL 359 >gi|76789443|ref|YP_328529.1| GTP-binding protein EngA [Chlamydia trachomatis A/HAR-13] gi|237803133|ref|YP_002888327.1| GTP-binding protein EngA [Chlamydia trachomatis B/Jali20/OT] gi|237805054|ref|YP_002889208.1| GTP-binding protein EngA [Chlamydia trachomatis B/TZ1A828/OT] gi|123606653|sp|Q3KKZ1|DER_CHLTA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|76167973|gb|AAX50981.1| GTP-binding protein [Chlamydia trachomatis A/HAR-13] gi|231273354|emb|CAX10269.1| GTP-binding protein [Chlamydia trachomatis B/TZ1A828/OT] gi|231274367|emb|CAX11162.1| GTP-binding protein [Chlamydia trachomatis B/Jali20/OT] Length = 490 Score = 202 bits (514), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 141/486 (29%), Positives = 244/486 (50%), Gaps = 33/486 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAI+G PNVGKS+LFNRL K+ +A+V + G TRDRLYG+ I +++DT G+ Sbjct: 3 IAILGRPNVGKSSLFNRLCKRSLAIVNSQEGTTRDRLYGEIRAWDSIIHVIDTGGVDQES 62 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 KQ++ Q A EA ++L ++D + GIT D + L P+I+V NK D++ Sbjct: 63 TDRFQKQIHQQALAAAEEASVLLLVVDIRCGITKQDEELAKRLLPLKKPLILVMNKADSQ 122 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHD--------------------------LGTSELHSV 158 + +E Y L +++ SA HD + EL S Sbjct: 123 QDLQRIHEFYGLGISDMIATSASHDKHIDLLLERIRQIAQIPVPSVEEQDAVQEDELPSE 182 Query: 159 IFKIFKQKYPNHPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKST 218 I + + L E+ + E S E + ++ + + +PL++A++G PNVGKS+ Sbjct: 183 EAAISLHAFADETLFENESLSQEEASFLEELVAQTATPAP-VDRPLKVALIGHPNVGKSS 241 Query: 219 LINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKK 278 +IN LL R +T + G TRD++ +++ N DTAG+RK I S+E + + Sbjct: 242 IINALLKEERCITDNSPGTTRDNIDVAYTHNNKEYVFIDTAGLRKTKSIKNSVEWMSSSR 301 Query: 279 SMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD-MVSDKL-NLLQD 336 + +++ + ++++DAT QD RI+ + V+ +NKWD M ++ + +QD Sbjct: 302 TEKAISRTDICLLVIDATQQLSYQDKRILSMIARYKKPHVILVNKWDLMFGVRMEHYVQD 361 Query: 337 LRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQL 396 LR K P IG I IS + L + ++ ++ + T+++TS +N L Sbjct: 362 LR----KMDPYIGQARILCISAKQRRNLLQIFSAIDDVYTIATTKLSTSLVNKVLASAMQ 417 Query: 397 QNPPPTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 ++ P I + R+ Y ++P +FL+F + + + Y+ YL N L+ F+L +P Sbjct: 418 RHHPQVINGKRLRIYYAIHKTTTPFTFLLFINSNSLLTKPYELYLKNTLKAAFNLYRVPF 477 Query: 457 RMCFQS 462 + +++ Sbjct: 478 DLEYKA 483 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/126 (28%), Positives = 65/126 (51%), Gaps = 2/126 (1%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 +RIA++GRPNVGKS+L NRL + + SQ G TRD + + I + DT G+ + Sbjct: 1 MRIAILGRPNVGKSSLFNRLCKRSLAIVNSQEGTTRDRLYGEIRAWDSIIHVIDTGGVDQ 60 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 S T+ +++ ++++ + ++++D KQD + + ++L +NK Sbjct: 61 ES--TDRFQKQIHQQALAAAEEASVLLLVVDIRCGITKQDEELAKRLLPLKKPLILVMNK 118 Query: 324 WDMVSD 329 D D Sbjct: 119 ADSQQD 124 >gi|30682040|ref|NP_187815.2| emb2738 (embryo defective 2738); GTP binding [Arabidopsis thaliana] gi|209529777|gb|ACI49783.1| At3g12080 [Arabidopsis thaliana] gi|332641625|gb|AEE75146.1| GTP-binding protein [Arabidopsis thaliana] Length = 663 Score = 202 bits (514), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 144/506 (28%), Positives = 250/506 (49%), Gaps = 69/506 (13%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 ++ +AIVG PNVGKS LFNRLV + A+V + PG+TRDRLYG++ F +VDT G+ Sbjct: 157 LLQRVAIVGRPNVGKSALFNRLVGENRAIVVDEPGVTRDRLYGRSYWGDQEFVVVDTGGV 216 Query: 61 A--------------------------DGKNCSIAKQ---MNDQTELAINEAHLILFLID 91 + +IA+ + Q A++E+ +I+F++D Sbjct: 217 MTVSKSPSGVMEELNVSTTIGMEGIPLSSREAAIARMPSMIEKQATAAVDESAVIIFVVD 276 Query: 92 SKAGITPYDHAITSFLRK--KNIPIIIVSNKMDT-RIAQRNFYEIYSLDFKEIVEISAEH 148 +AG + D I +LRK + II+ NK ++ R E +SL F I ISA Sbjct: 277 GQAGPSGADVEIADWLRKYYSHKYIILAVNKCESPRKGLMQASEFWSLGFTPI-PISALS 335 Query: 149 DLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAV 208 GT EL ++ +++ EE + I + IA+ Sbjct: 336 GTGTGELLDLVCSGL--------IKLEIMENIEEEEEENYIPA--------------IAI 373 Query: 209 VGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKN-HPIEIFDTAGMRKPSRI 267 +GRPNVGKS+++N L+ +R + SG TRD++ + + + DTAG+RK S + Sbjct: 374 IGRPNVGKSSILNALVREDRTIVSPVSGTTRDAIDAEFTGPDGEKFRLIDTAGIRKKSSV 433 Query: 268 TES---LEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 S E +V ++ +++R + ++++A +QDL+I + + G ++ +NKW Sbjct: 434 ASSGSTTEAMSVNRAFRAIRRSDVVALVIEAMACITEQDLKIAERIEREGKGCLVVVNKW 493 Query: 325 DMVSDK-----LNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWK 379 D + +K + D+R K +++L +Y I TG +D+++V+ + K Sbjct: 494 DTIPNKNQETAAHYEDDVREK-LRSLKWAPIVYSTAI---TGHSVDNIVVAAATVQKERS 549 Query: 380 TRITTSYLNSWLQKT-QLQNPPPTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYK 438 R++T+ LN +++ ++PP T + R+ Y TQ PP+F+ F ++Y+ Sbjct: 550 RRLSTAILNQVIREAVAFKSPPRTRGGKRGRVYYCTQAAIRPPTFVFFVNDAKLFSDTYR 609 Query: 439 RYLINRLRINFSLSGIPIRMCFQSSK 464 RY+ +LR + +G PIR+ ++S K Sbjct: 610 RYMEKQLRTDAGFAGTPIRLLWRSRK 635 >gi|254417083|ref|ZP_05030829.1| GTPase, putative [Microcoleus chthonoplastes PCC 7420] gi|196176061|gb|EDX71079.1| GTPase, putative [Microcoleus chthonoplastes PCC 7420] Length = 461 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 133/477 (27%), Positives = 235/477 (49%), Gaps = 53/477 (11%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A++G PNVGKSTL NRL A+V + PG+TRDR Y A ++IVDT G+ Sbjct: 6 VAVIGRPNVGKSTLVNRLAGVMDAIVHDQPGVTRDRTYRPAFWQDRDYSIVDTGGLVFDD 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + +Q A++EA + ++D + G T D+AI +LR+ +P+++ NK ++ Sbjct: 66 DTEFLPLIREQAMAALSEASAAILVVDGQMGPTAADYAIADWLRQHPVPVVLAVNKCES- 124 Query: 125 IAQRNF---YEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHP-LEMIENNKR 180 Q+ E + L E +SA H GT EL Q + P + M+ + Sbjct: 125 -PQQGLIQAAEFWELGLGEPFPVSAIHGAGTGEL-------LDQLITHLPTVGMLPD--- 173 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 TSE + +A+VGRPNVGKS+L+N L G R + S SG TRD Sbjct: 174 ---------TSE-----------INVAIVGRPNVGKSSLLNALTGEKRAIVSSVSGTTRD 213 Query: 241 SVSISWNWKNHP--------IEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVL 292 ++ + +P + DTAG+R+ + E + ++ +++R + + + Sbjct: 214 AIDMIVERPGNPETETESQLYRLIDTAGIRRKKNVEYGPEFFGINRAFKAIRRADVVLFV 273 Query: 293 LDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKN----LPQI 348 +DA +QD ++ + G A V+ +NKWD + + + K +KN + Sbjct: 274 VDALDGVTEQDQKLAGRIAEDGRAAVILVNKWDAIEKDTYTIYEYE-KLLKNRLYFVEWA 332 Query: 349 GDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKT-QLQNPPPTIFNRY 407 I+++ ++G+ + + DL+ +V ++ R++TS +N L + +PP R Sbjct: 333 PMIFVSALTGKRVDKILDLVDTVAAEHQ---RRVSTSVINEVLAEAINWHSPPTNRQGRQ 389 Query: 408 NRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 ++ Y TQ++S PP+ +F P + E+Y+RY+ + R +G P+R+ ++ K Sbjct: 390 GKIYYGTQVKSKPPTIALFVNDPKRFNENYRRYIERQFRQQLGFTGTPLRLLWRGKK 446 >gi|89897898|ref|YP_515008.1| GTP-binding protein EngA [Chlamydophila felis Fe/C-56] gi|123483923|sp|Q256C5|DER_CHLFF RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|89331270|dbj|BAE80863.1| GTP-binding GTPase [Chlamydophila felis Fe/C-56] Length = 475 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 141/466 (30%), Positives = 233/466 (50%), Gaps = 16/466 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAI+G PNVGKS+LFNR+ K+ +A+V + G TRDRLYG+ V ++DT G+ Sbjct: 4 IAILGRPNVGKSSLFNRMCKQSLAIVNSQEGTTRDRLYGEIRGWSVPVQVIDTGGVDKDS 63 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 K + Q EA ++L +ID + GIT D AI L P+I+V+NK DT Sbjct: 64 EDHFQKHIYKQALAGAGEADILLLVIDIRCGITEQDAAIAKQLLPLKKPLILVANKADTL 123 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVI---FKIFKQKYPNHPLEMIENNKRN 181 + + +E+Y + EI+ +SA HD L I I + E + Sbjct: 124 KDEHHVHELYKIGISEILTVSASHDKHIDRLLQKIKTLANIPEIAEEPVEEIEEEAQISS 183 Query: 182 EE--SPKENITSEGKSSV-----KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQ 234 E SP+E+++ + + KPL+IA++GRPNVGKS++IN LL R + + Sbjct: 184 HEILSPEESLSDYEEEEILFSKPPASDKPLKIALIGRPNVGKSSIINGLLNEERCIIDNI 243 Query: 235 SGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLD 294 G TRD+V I ++ + DTAG+RK + S+E + ++ +++ + ++++D Sbjct: 244 PGTTRDNVDILYSHNDRSYLFIDTAGLRKMKSVKNSIEWISSSRTEKAIARADICLLVID 303 Query: 295 ATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSD--KLNLLQDLRTKAIKNLPQIGDIY 352 AT D RI+ + ++ NKWD++ + ++DLR+ + IG Sbjct: 304 ATHCLSSYDKRILSLISKHKKPHIILANKWDLIKGVRMEHYIRDLRSTDV----YIGQSR 359 Query: 353 INTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKY 412 I IS L + S+ E+++ ++ T +N L ++ P I R R+ Y Sbjct: 360 ILCISAAKKRNLRHIFSSIDELHETVSRKVPTPVVNKTLASALQKHHPQVINGRRLRIYY 419 Query: 413 ITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 ++P FL+F + + + Y+ YL N L+ +F+L GIP + Sbjct: 420 AIHKTATPFQFLLFINAKSLLTKHYECYLKNTLKTSFNLYGIPFDL 465 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 81/165 (49%), Gaps = 11/165 (6%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 LRIA++GRPNVGKS+L NR+ + + SQ G TRD + + P+++ DT G+ K Sbjct: 2 LRIAILGRPNVGKSSLFNRMCKQSLAIVNSQEGTTRDRLYGEIRGWSVPVQVIDTGGVDK 61 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 S + ++ K+++ + ++++D +QD I + ++L NK Sbjct: 62 DSE--DHFQKHIYKQALAGAGEADILLLVIDIRCGITEQDAAIAKQLLPLKKPLILVANK 119 Query: 324 WDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLM 368 D + D+ + + L +IG I T+S + +D L+ Sbjct: 120 ADTLKDEHH---------VHELYKIGISEILTVSASHDKHIDRLL 155 >gi|28373695|pdb|1MKY|A Chain A, Structural Analysis Of The Domain Interactions In Der, A Switch Protein Containing Two Gtpase Domains Length = 439 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 149/466 (31%), Positives = 227/466 (48%), Gaps = 34/466 (7%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+ IVG PNVGKSTLFN+LVKKK A+V + G+TRD + G F +VDT G+ D Sbjct: 3 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDN 62 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 I+++ + T I EA L+LF++D K GIT D ++ FLRK + I+V+NK + Sbjct: 63 PQDIISQKXKEVTLNXIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAEN 122 Query: 124 -RIAQRNFY-EIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 R +R E+YSL F E + +SAEH++ I K ++K L++ Sbjct: 123 LREFEREVKPELYSLGFGEPIPVSAEHNINLDTXLETIIKKLEEK----GLDL------- 171 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 E P+ I+ +++A+VGRPNVGKSTL N +L R L G TRD Sbjct: 172 ESKPE-------------ITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDP 218 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRIT-ESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 V DTAG+R+ SR+ ++E+ + + + S+ + +++LDAT Sbjct: 219 VDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGIT 278 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 +QD R G A V+ NKWD+V + + + L I + S Sbjct: 279 RQDQRXAGLXERRGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADK 338 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKT-QLQNPPPTIFNRYNRLKYITQIQSS 419 G +D + + + T++ +S +NS LQK N P R ++ + Q+ Sbjct: 339 GWNIDRXIDAXNLAYASYTTKVPSSAINSALQKVLAFTNLP-----RGLKIFFGVQVDIK 393 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLR-INFSLSGIPIRMCFQSSK 464 PP+FL F K+ K +L +R F G PI + F+ S+ Sbjct: 394 PPTFLFFVNSIEKVKNPQKIFLRKLIRDYVFPFEGSPIFLKFKRSR 439 >gi|255544860|ref|XP_002513491.1| GTP-binding protein enga, putative [Ricinus communis] gi|223547399|gb|EEF48894.1| GTP-binding protein enga, putative [Ricinus communis] Length = 624 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 146/503 (29%), Positives = 251/503 (49%), Gaps = 72/503 (14%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI---- 60 +AIVG PNVGKS LFNRLV A+V + PG+TRDRLYG++ F +VDT G+ Sbjct: 143 VAIVGRPNVGKSALFNRLVGGNKAIVVDEPGVTRDRLYGRSFWGDFEFMVVDTGGVLTIS 202 Query: 61 -----------------ADG-----KNCSIAKQ---MNDQTELAINEAHLILFLIDSKAG 95 DG + ++A+ + Q A+ E+ +I+FL+D +AG Sbjct: 203 QSQDNVMEDLAITTTIGMDGIPLASREAAVARMPSMIERQAAAAVEESSVIIFLVDGQAG 262 Query: 96 ITPYDHAITSFLRK--KNIPIIIVSNKMDT-RIAQRNFYEIYSLDFKEIVEISAEHDLGT 152 + D I +LRK N II+ NK ++ + E +SL I ISA GT Sbjct: 263 LIAADIEIADWLRKNYSNKFIILAVNKCESPKKGIMQAAEFWSLGLSPI-PISALSGTGT 321 Query: 153 SELHSVIF-KIFKQKYPNHPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGR 211 EL ++ ++ K + H ++N ++N IA+VGR Sbjct: 322 GELLDLVCSQLAKVEVSKH----LDNEEQNYVPA--------------------IAIVGR 357 Query: 212 PNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKN-HPIEIFDTAGMRKPSRITES 270 PNVGKS+++N L+G +R + SG TRD++ ++ + + DTAG+R+ + + S Sbjct: 358 PNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFSGPDGQKFRLIDTAGIRRRAAVASS 417 Query: 271 ---LEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMV 327 E +V ++ +++R + ++++A +QD RI D + G ++ +NKWD + Sbjct: 418 GSLTEALSVNRAFRAIRRSDVVALVIEAMACITEQDFRIADRIEKEGKGCLIVVNKWDTI 477 Query: 328 SDK-----LNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRI 382 +K QD+R K ++ L +Y I+ + ++ ++++ + K R+ Sbjct: 478 PNKNQQTATYYEQDVREK-LRILQWAPIVYSTAIADHS---VEKIIIAASAVEKERSRRL 533 Query: 383 TTSYLNSWLQKT-QLQNPPPTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYL 441 +T+ LN +++ ++PP T R R+ Y TQ PP+F+ F + PE+Y+R++ Sbjct: 534 STAILNQVVREALAFKSPPRTRGGRRGRVYYCTQAAIRPPTFVFFVNDASLFPETYRRFM 593 Query: 442 INRLRINFSLSGIPIRMCFQSSK 464 +LR + SG PIR+ ++S + Sbjct: 594 EKQLRSDAGFSGTPIRLLWRSRR 616 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 56/198 (28%), Positives = 88/198 (44%), Gaps = 37/198 (18%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP 264 R+A+VGRPNVGKS L NRL+G N+ + + G+TRD + W + + DT G+ Sbjct: 142 RVAIVGRPNVGKSALFNRLVGGNKAIVVDEPGVTRDRLYGRSFWGDFEFMVVDTGGVLTI 201 Query: 265 SR----ITESLEQKTV-----------------------KKSMQSVRTCETTIVLLDATI 297 S+ + E L T +++ +V I L+D Sbjct: 202 SQSQDNVMEDLAITTTIGMDGIPLASREAAVARMPSMIERQAAAAVEESSVIIFLVDGQA 261 Query: 298 PFEKQDLRIVDSVFN--TGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINT 355 D+ I D + + ++LA+NK + S K ++Q ++ P I I+ Sbjct: 262 GLIAADIEIADWLRKNYSNKFIILAVNKCE--SPKKGIMQAAEFWSLGLSP----IPISA 315 Query: 356 ISGRTGEG-LDDLMVSVL 372 +SG TG G L DL+ S L Sbjct: 316 LSG-TGTGELLDLVCSQL 332 >gi|119025833|ref|YP_909678.1| bifunctional cytidylate kinase/GTP-binding protein [Bifidobacterium adolescentis ATCC 15703] gi|118765417|dbj|BAF39596.1| GTP-binding protein engA [Bifidobacterium adolescentis ATCC 15703] Length = 675 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 136/462 (29%), Positives = 215/462 (46%), Gaps = 40/462 (8%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI- 60 + +A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ A G F +VDT G Sbjct: 238 VGVLAVVGRPNVGKSTLVNRILGRRAAVVEDTPGVTRDRVSYDAEWCGTDFKLVDTGGWE 297 Query: 61 --ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVS 118 +G +IA Q ++A+ A ++ ++D G+T D I LR P+ + Sbjct: 298 TDVEGIESAIAS----QAQIAVQLADAVILVVDGLVGLTDTDERIVKMLRAAGKPVTLAV 353 Query: 119 NKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 NK+D R ++ E + + E ISA H G EL K+ Sbjct: 354 NKVDDRESEYLTAEFWKMGLGEPYGISAMHGRGIGELLDAALDSLKK------------- 400 Query: 179 KRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 +E S S R+A+VGRPNVGKS+L+N+L R + +G T Sbjct: 401 ------------AERTSGFLTPSHLRRVALVGRPNVGKSSLLNQLAHEERTVVNDLAGTT 448 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RD V DTAG+++ E + ++ ++ E +VL DA+ P Sbjct: 449 RDPVDEVVTVDGEDWLFIDTAGIKRRLHKLSGAEYFSSLRTQAAIERSELALVLFDASQP 508 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVS--DKLNLLQDLRTKAIKNLPQIGDIYINTI 356 QDL+++ + G +VL NKWD++ D+ + + +T+ ++ + Sbjct: 509 ISDQDLKVMSQAVDAGRCIVLVFNKWDLMDEFDRQRMERLWKTE----FNRVTWAQRVNL 564 Query: 357 SGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQI 416 S +TG + L ++ W RI T LN++L K Q +P P + R+ + TQ Sbjct: 565 SAKTGWHTNRLANAMRGALASWDKRIPTGKLNAFLGKIQAAHPHPLRGGKQPRILFATQA 624 Query: 417 QSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 + PP F+IF T + Y+RY+ LR F G PI++ Sbjct: 625 STRPPRFVIFAT--GFLEHGYRRYIERCLREEFGFEGSPIQI 664 >gi|154487333|ref|ZP_02028740.1| hypothetical protein BIFADO_01183 [Bifidobacterium adolescentis L2-32] gi|154083851|gb|EDN82896.1| hypothetical protein BIFADO_01183 [Bifidobacterium adolescentis L2-32] Length = 709 Score = 201 bits (512), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 134/459 (29%), Positives = 213/459 (46%), Gaps = 34/459 (7%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + +A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ A G F +VDT G Sbjct: 272 VGVLAVVGRPNVGKSTLVNRILGRRAAVVEDTPGVTRDRVSYDAEWCGTDFKLVDTGGW- 330 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 + I + Q ++A+ A ++ ++D G+T D I LR P+ + NK+ Sbjct: 331 EADVEGIESAIASQAQIAVQLADAVILVVDGLVGLTDTDERIVKMLRAAGKPVTLAVNKV 390 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D R ++ E + + E ISA H G EL K+ Sbjct: 391 DDRESEYLTAEFWKMGLGEPYGISAMHGRGIGELLDAALDSLKK---------------- 434 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 +E S S R+A+VGRPNVGKS+L+N+L R + +G TRD Sbjct: 435 ---------AERTSGFLTPSHLRRVALVGRPNVGKSSLLNQLAHEERTVVNDLAGTTRDP 485 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 V DTAG+++ E + ++ ++ E +VL DA+ P Sbjct: 486 VDEVVTVDGEDWLFIDTAGIKRRLHKLSGAEYFSSLRTQAAIERSELALVLFDASQPISD 545 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVS--DKLNLLQDLRTKAIKNLPQIGDIYINTISGR 359 QDL+++ + G +VL NKWD++ D+ + + +T+ ++ +S + Sbjct: 546 QDLKVMSQAVDAGRCIVLVFNKWDLMDEFDRQRMERLWKTE----FNRVTWAQRVNLSAK 601 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 TG + L ++ W RI T LN++L K Q +P P + R+ + TQ + Sbjct: 602 TGWHTNRLANAMRGALASWDKRIPTGKLNAFLGKIQAAHPHPLRGGKQPRILFATQASTR 661 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 PP F+IF T + Y+RY+ LR F G PI++ Sbjct: 662 PPRFVIFAT--GFLEHGYRRYIERCLREEFGFEGSPIQI 698 >gi|296084119|emb|CBI24507.3| unnamed protein product [Vitis vinifera] Length = 739 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 149/543 (27%), Positives = 262/543 (48%), Gaps = 94/543 (17%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPG--ITRDRLYGQAIINGVIFNIVDTA 58 ++ T+ +VG PNVGKS LFNRL++++ A+V N P +TRD G A + + F ++D+A Sbjct: 141 LLPTVILVGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDFREGIAKLGDLRFRVLDSA 200 Query: 59 GIA-DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKK--NIPII 115 G+ + SI + D T + + +FLID +AG+ P D + +LR+ I I Sbjct: 201 GLEMAATSGSILGRTADMTANVLARSQFAIFLIDVRAGLHPMDLEVGKWLRRHAPGICTI 260 Query: 116 IVSNKMDTRIAQRNFY-----EIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNH 170 +V NK ++ E Y L F + + ISAE LG +EL+ + + + +H Sbjct: 261 LVMNKSESLDDGAGLLAAAAGEAYELGFGDPIAISAETGLGMAELYESLRPLLE----DH 316 Query: 171 PLEMIENNK---------------------RNEESPKE-------NITS----------- 191 L++++ + +NEE +E NI+S Sbjct: 317 MLQVLDETECGFWKATGLSIPLLWDSLLHAQNEEVGREWEDLTIGNISSVVFWFSSIYAA 376 Query: 192 ------------EGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITR 239 V+ PL++A+VGRPNVGKSTL+N LL NR+L G ++G+TR Sbjct: 377 ASGALAYKGSQENSSCDVEESKSPLQLAIVGRPNVGKSTLLNTLLQENRVLVGPEAGLTR 436 Query: 240 DSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDAT--- 296 DSV + ++ + + DTAG + ++ + +V +S +S+ ++LDA Sbjct: 437 DSVRAQFQFQGRTVYLVDTAGWLQRTKQEKGPASLSVMQSRKSIMRAHVVALVLDAEEIA 496 Query: 297 ---IPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLN------LLQDLRTKAIKNLPQ 347 + ++ I G +V+ +NK D++ + N +++ + + +PQ Sbjct: 497 NARSSMKHAEVVIARRAVEEGRGLVVIVNKMDLLKGRKNSKLYEKVMEAVPEEIQMVIPQ 556 Query: 348 IGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRY 407 + I + IS G G +M V++ + W R++T+ LN WL+K + +R+ Sbjct: 557 VTGIPVVFISALEGRGRISVMRQVIDTYEKWCLRLSTARLNRWLRK---------VMSRH 607 Query: 408 N--------RLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 + ++KY TQ+++ PP+F+ F ++ + R+L L+ +F L GIPIR+ Sbjct: 608 SWKDQAAQPKIKYFTQVKARPPTFVAFMGGKTQLSNTDLRFLTKSLKEDFDLGGIPIRIM 667 Query: 460 FQS 462 +S Sbjct: 668 QRS 670 >gi|8134431|sp|Q49884|DER_MYCLE RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|467147|gb|AAA50911.1| u0247e [Mycobacterium leprae] Length = 461 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 141/468 (30%), Positives = 228/468 (48%), Gaps = 36/468 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA-DG 63 +A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ A+ G F + DT G D Sbjct: 27 VAVVGRPNVGKSTLVNRILGRREAVVQDVPGVTRDRVSYDAMWTGRRFVVQDTGGWEPDA 86 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 K + + + +Q +A+ A ++ ++D G T D A L + + + +NK+D Sbjct: 87 KG--LKRLVAEQASVAMRTADAVILVVDVGVGATDADEAAARILLRSGKLVFLAANKVDG 144 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + ++SL E ISA H G ++L + PN Sbjct: 145 EKGESDASALWSLGLGEPHAISAMHGRGVADLLDKVLAAL----PN-------------- 186 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 E+ + +G R+A+VG+PNVGKS+L+N+L G R + +G T D V Sbjct: 187 -VAESTSLDGGLR--------RVALVGKPNVGKSSLLNKLAGDQRSVVHEAAGTTVDPVD 237 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 DTAG+R+ E ++ ++ + E I+L+DA+ P QD Sbjct: 238 SLIEMGGRVWRFVDTAGLRRKVGQASGHEFYASVRTHGAIDSAEVVIMLIDASEPLTGQD 297 Query: 304 LRIVDSVFNTGHAVVLALNKWDMV-SDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 R++ V + G A+VLA NKWD+V D+ +LL+ + + L Q+ IS +TG Sbjct: 298 QRVLSMVIDAGRALVLAFNKWDLVDEDRCDLLE---REIDRELVQVRWAQRVNISAKTGR 354 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 + L+ ++ W TRI T LN W++ PPP + R+ + TQ + PP+ Sbjct: 355 AVQKLVPAMENSLASWDTRIATGPLNIWIKAVVAATPPPVRGGKQPRILFATQATARPPT 414 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 F++F T + Y+R+L RLR F G PIR+ + + +K+ Sbjct: 415 FVLFTT--GFLEACYRRFLERRLRETFGFEGSPIRINVRVREKRGLKR 460 >gi|15827717|ref|NP_301980.1| GTP-binding protein EngA [Mycobacterium leprae TN] gi|221230194|ref|YP_002503610.1| GTP-binding protein EngA [Mycobacterium leprae Br4923] gi|13093268|emb|CAC31753.1| possible GTP-binding protein [Mycobacterium leprae] gi|219933301|emb|CAR71467.1| possible GTP-binding protein [Mycobacterium leprae Br4923] Length = 462 Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 141/468 (30%), Positives = 228/468 (48%), Gaps = 36/468 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA-DG 63 +A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ A+ G F + DT G D Sbjct: 28 VAVVGRPNVGKSTLVNRILGRREAVVQDVPGVTRDRVSYDAMWTGRRFVVQDTGGWEPDA 87 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 K + + + +Q +A+ A ++ ++D G T D A L + + + +NK+D Sbjct: 88 KG--LKRLVAEQASVAMRTADAVILVVDVGVGATDADEAAARILLRSGKLVFLAANKVDG 145 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + ++SL E ISA H G ++L + PN Sbjct: 146 EKGESDASALWSLGLGEPHAISAMHGRGVADLLDKVLAAL----PN-------------- 187 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 E+ + +G R+A+VG+PNVGKS+L+N+L G R + +G T D V Sbjct: 188 -VAESTSLDGGLR--------RVALVGKPNVGKSSLLNKLAGDQRSVVHEAAGTTVDPVD 238 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 DTAG+R+ E ++ ++ + E I+L+DA+ P QD Sbjct: 239 SLIEMGGRVWRFVDTAGLRRKVGQASGHEFYASVRTHGAIDSAEVVIMLIDASEPLTGQD 298 Query: 304 LRIVDSVFNTGHAVVLALNKWDMV-SDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 R++ V + G A+VLA NKWD+V D+ +LL+ + + L Q+ IS +TG Sbjct: 299 QRVLSMVIDAGRALVLAFNKWDLVDEDRCDLLE---REIDRELVQVRWAQRVNISAKTGR 355 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 + L+ ++ W TRI T LN W++ PPP + R+ + TQ + PP+ Sbjct: 356 AVQKLVPAMENSLASWDTRIATGPLNIWIKAVVAATPPPVRGGKQPRILFATQATARPPT 415 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 F++F T + Y+R+L RLR F G PIR+ + + +K+ Sbjct: 416 FVLFTT--GFLEACYRRFLERRLRETFGFEGSPIRINVRVREKRGLKR 461 >gi|255556681|ref|XP_002519374.1| GTP-binding protein enga, putative [Ricinus communis] gi|223541441|gb|EEF42991.1| GTP-binding protein enga, putative [Ricinus communis] Length = 635 Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 141/493 (28%), Positives = 254/493 (51%), Gaps = 45/493 (9%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPG--ITRDRLYGQAIINGVIFNIVDTA 58 ++ T+ I+G PNVGKS LFNRL++++ A+V N P +TRD G A + + F ++D+A Sbjct: 125 LLPTVIIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFRVLDSA 184 Query: 59 GI-ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKK--NIPII 115 G+ + + SI ++ T + +FLID +AG+ P D + +LRK I I Sbjct: 185 GLETEATSGSILQRTTSMTANVLARTQFAIFLIDVRAGLHPLDVEVGKWLRKHAPGINPI 244 Query: 116 IVSNKMDTRIA-----QRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNH 170 + NK ++ + E L F + + ISAE LG + L+ + + ++ Sbjct: 245 VAMNKSESLCDGAGSIEEAADEARMLGFGDPIAISAETGLGMTTLYDSLGPLL----VDY 300 Query: 171 PLEMIENNKRNEESPKENITSEGKSSVKNISK-PLRIAVVGRPNVGKSTLINRLLGYNRL 229 L +++NN N+ S + + S V+ SK P+++A+VGRPNVGKSTL+N LL R+ Sbjct: 301 ALNVLKNNC-NQHSSNDATHYDSSSEVEEDSKLPMQLAIVGRPNVGKSTLLNTLLQEERV 359 Query: 230 LTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETT 289 L G + G+TRDS+ ++++ I + DTAG + + ++ +S +++ Sbjct: 360 LVGPEVGLTRDSIRSQFDFQGRTIYLVDTAGWLHRTGQEKGPSSLSIVQSRKNLMRAHVV 419 Query: 290 IVLLDAT------IPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLN------LLQDL 337 ++LDA ++ I G +V+ +NK D++ K N +++ + Sbjct: 420 ALVLDAAEIAKARRSMTHAEVVIARRAVEEGRGLVVIVNKMDLLQGKQNSKLFEKVMEAV 479 Query: 338 RTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQ 397 + +PQ+ I + IS G G ++ V+ + W +R+ T+ LN WL K Sbjct: 480 PLEIQTVIPQVSGIPVVFISALEGRGRTAVLRQVIGTYEKWCSRLPTARLNRWLHK---- 535 Query: 398 NPPPTIFNRYN--------RLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINF 449 + +R++ ++KY TQ+++ PP+F+ F + ++ ++ R+L L+ +F Sbjct: 536 -----VMSRHSWKDQAAQPKIKYFTQVKARPPTFVAFTSGKTRLSDTDLRFLTKSLKEDF 590 Query: 450 SLSGIPIRMCFQS 462 +L GIPIR+ +S Sbjct: 591 NLGGIPIRIMQRS 603 >gi|224106171|ref|XP_002314070.1| predicted protein [Populus trichocarpa] gi|222850478|gb|EEE88025.1| predicted protein [Populus trichocarpa] Length = 489 Score = 201 bits (510), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 149/503 (29%), Positives = 246/503 (48%), Gaps = 73/503 (14%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIF------------ 52 +AIVG PNVGKS LFNRLV A+V + PG+TRDRLYG++ F Sbjct: 10 VAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRLYGRSFWGEHEFMVVDTGGVVTVS 69 Query: 53 ----NIVDTAGIA-----DG-----KNCSIAK---QMNDQTELAINEAHLILFLIDSKAG 95 N+++ I+ DG + ++A+ + Q A+ E+ +I+FL+D +AG Sbjct: 70 KSQANVMEDLAISTTIGMDGIPLASREAAVARMPSMIEKQATAAVEESSVIIFLVDGQAG 129 Query: 96 ITPYDHAITSFLRK--KNIPIIIVSNKMDT-RIAQRNFYEIYSLDFKEIVEISAEHDLGT 152 +T D I +LR+ N II+ NK ++ R E +SL F + ISA GT Sbjct: 130 LTAADVEIADWLRRNYSNKCIILAVNKCESPRKGIMQASEFWSLGFSPL-PISAISGTGT 188 Query: 153 SELHSVIFKIFKQKYPNHPLEMIEN-NKRNEESPKENITSEGKSSVKNISKPLRIAVVGR 211 EL ++ + +E+ +N N+ P IA+VGR Sbjct: 189 GELLDLVCSRLGK------VEVSKNVNEEETYIPA-------------------IAIVGR 223 Query: 212 PNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISW-NWKNHPIEIFDTAGMRKPSRITES 270 PNVGKS+++N L+G +R + SG TRD++ + + DTAG+R+ + + S Sbjct: 224 PNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFVGPDGQKFLLIDTAGIRRRAAVASS 283 Query: 271 ---LEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMV 327 E +V ++ + +R + ++++A +QD RI + + G ++ +NKWD + Sbjct: 284 GSVTEALSVNRAFRGIRRSDVVALVIEAMACITEQDYRIAERIEKEGKGCLIVVNKWDTI 343 Query: 328 SDK-----LNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRI 382 +K QD+R K ++ L +Y I+G ++ ++V+ + K R+ Sbjct: 344 PNKNQQTATYYEQDVREK-LRLLHWAPIVYSTAIAGHN---VEKIIVAASTVEKERSRRL 399 Query: 383 TTSYLNSWLQKTQLQNPPP-TIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYL 441 TS LN +++ PPP T + R+ Y TQ PP+F+ F N PE+Y+RY+ Sbjct: 400 GTSILNQVVREALAFKPPPRTRGGKRGRVYYCTQAAIRPPTFVFFVNDSNLFPETYRRYM 459 Query: 442 INRLRINFSLSGIPIRMCFQSSK 464 +LR + SG PIR+ ++S + Sbjct: 460 EKQLRSDAGFSGTPIRLLWRSRR 482 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 44/130 (33%), Positives = 69/130 (53%), Gaps = 10/130 (7%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAI-INGVIFNIVDTAGI 60 I IAIVG PNVGKS++ N LV + +V G TRD + + + +G F ++DTAGI Sbjct: 215 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFVGPDGQKFLLIDTAGI 274 Query: 61 ADGKNCSIAKQMNDQTELAINEA-------HLILFLIDSKAGITPYDHAITSFLRKKNIP 113 + ++A + L++N A ++ +I++ A IT D+ I + K+ Sbjct: 275 R--RRAAVASSGSVTEALSVNRAFRGIRRSDVVALVIEAMACITEQDYRIAERIEKEGKG 332 Query: 114 IIIVSNKMDT 123 +IV NK DT Sbjct: 333 CLIVVNKWDT 342 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 55/206 (26%), Positives = 81/206 (39%), Gaps = 53/206 (25%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNH------------- 251 ++A+VGRPNVGKS L NRL+G NR + + G+TRD + W H Sbjct: 9 KVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRLYGRSFWGEHEFMVVDTGGVVTV 68 Query: 252 ----------------------PIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETT 289 P+ + A R PS I K++ +V Sbjct: 69 SKSQANVMEDLAISTTIGMDGIPLASREAAVARMPSMIE--------KQATAAVEESSVI 120 Query: 290 IVLLDATIPFEKQDLRIVDSVFN--TGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQ 347 I L+D D+ I D + + ++LA+NK + + + + LP Sbjct: 121 IFLVDGQAGLTAADVEIADWLRRNYSNKCIILAVNKCESPRKGIMQASEFWSLGFSPLP- 179 Query: 348 IGDIYINTISGRTGEG-LDDLMVSVL 372 I+ ISG TG G L DL+ S L Sbjct: 180 -----ISAISG-TGTGELLDLVCSRL 199 >gi|332007113|gb|AED94496.1| GTP-binding protein [Arabidopsis thaliana] Length = 621 Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 141/484 (29%), Positives = 252/484 (52%), Gaps = 42/484 (8%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPG--ITRDRLYGQAIINGVIFNIVDTA 58 ++ T+ ++G PNVGKS L+NRL++++ A+V N P +TRD G A + + FN++D+A Sbjct: 116 LLPTVMLMGRPNVGKSALYNRLIRRREALVYNTPDDHVTRDIREGIAKLGDLRFNVLDSA 175 Query: 59 GI-ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKK--NIPII 115 GI + + +I + T + + +ID +AG+ P D + +LRK I I Sbjct: 176 GIETEVSSGTILGRTTAMTANVLARTQFAVLIIDVRAGLHPLDLEVGKWLRKHAPQIKPI 235 Query: 116 IVSNKMDT-----RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNH 170 +V NK ++ +A E +L F E + ISAE LG + L+ V+ + + ++ Sbjct: 236 VVMNKSESIGSLDEVAS----EALALGFGEPIAISAETGLGMTTLYEVLRPLLE----DY 287 Query: 171 PLEMIEN-NKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRL 229 +EM+ + +++ EN++ E + PL++A+VG+PNVGKSTL+N LL R+ Sbjct: 288 TVEMLNDIGSQDDVLTDENLSDE----IDESKLPLQLAIVGKPNVGKSTLLNALLEEERV 343 Query: 230 LTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETT 289 L G ++G+TRD+V + + ++ + + DTAG + + + ++ +S +S+ Sbjct: 344 LVGPEAGLTRDAVRVQFEFQGRTVYLVDTAGWLERTERDKGPASLSIMQSRKSLMRAHVI 403 Query: 290 IVLLDAT------IPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIK 343 ++LDA ++ I G +V+ +NK D + + N K IK Sbjct: 404 ALVLDAEEIIKAKCSMTHSEVVIARRAVEEGRGLVVIVNKMDRLRGREN---SEMYKKIK 460 Query: 344 N---------LPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKT 394 +PQI I + IS G G ++M V + K W +R++T LN WL+K Sbjct: 461 EAVPIEIQTVIPQITGIPVVFISALEGRGRMEVMKEVTDTYKRWCSRLSTGRLNRWLRKV 520 Query: 395 QLQNPPPTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGI 454 ++ ++ ++K+ TQ+++ PP+F+ F + ++ ES R+L L+ +F L G Sbjct: 521 MSRHSWKDTASQ-PKIKFFTQVKARPPTFVAFVSGKTQLLESDIRFLTRSLKEDFDLGGT 579 Query: 455 PIRM 458 PIR+ Sbjct: 580 PIRI 583 >gi|229004376|ref|ZP_04162143.1| GTP-binding protein engA [Bacillus mycoides Rock1-4] gi|228756874|gb|EEM06152.1| GTP-binding protein engA [Bacillus mycoides Rock1-4] Length = 368 Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 114/389 (29%), Positives = 197/389 (50%), Gaps = 28/389 (7%) Query: 71 QMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQRNF 130 Q+ Q E+AI+EA +I+F+ + + G+T D + L + P+++ NK+D + + Sbjct: 3 QIRQQAEVAIDEADVIIFMTNGRDGVTAADEEVAKILYRSKKPVVLAVNKVDNPEMRNDI 62 Query: 131 YEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEESPKENIT 190 Y+ Y+L F E IS H LG +L K F + IE ++E+ Sbjct: 63 YDFYALGFGEPFPISGTHGLGLGDLLDEAAKHFPK---------IEEEAYDDET------ 107 Query: 191 SEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKN 250 +R +++GRPNVGKS+L+N LLG R++ + +G TRD+V ++ Sbjct: 108 -------------IRFSLIGRPNVGKSSLVNALLGQERVIVSNVAGTTRDAVDTPYSKDG 154 Query: 251 HPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSV 310 I DTAGMRK ++ ES E+ +V ++++++ + +V+LD +QD +I Sbjct: 155 QDYVIIDTAGMRKKGKVYESTEKYSVLRALRAIERSDVVLVVLDGEEGIIEQDKKIAGYA 214 Query: 311 FNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVS 370 ++G AV++ +NKWD V ++ + + I +S +T + L+ Sbjct: 215 HDSGRAVIIVVNKWDAVKKDEKTMKAFEENIRAHFQFLDYAPIVFLSAKTKKRTQTLLPV 274 Query: 371 VLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFLIFCTFP 430 + E+N+ R+ T+ LN + NP PT + ++ Y TQ+ PP+F++F P Sbjct: 275 INEVNESHSIRVQTNVLNDVIMDAVAMNPTPTHNGQRLKIFYATQVAVKPPTFVVFVNDP 334 Query: 431 NKIPESYKRYLINRLRINFSLSGIPIRMC 459 + SY+R+L NRLR +F G PIR+ Sbjct: 335 ELMHFSYERFLKNRLRESFGFVGTPIRII 363 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 63/120 (52%), Gaps = 2/120 (1%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI-ADGK 64 +++G PNVGKS+L N L+ ++ +V N G TRD + +G + I+DTAG+ GK Sbjct: 111 SLIGRPNVGKSSLVNALLGQERVIVSNVAGTTRDAVDTPYSKDGQDYVIIDTAGMRKKGK 170 Query: 65 NCSIAKQMNDQTEL-AINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 ++ + L AI + ++L ++D + GI D I + +IIV NK D Sbjct: 171 VYESTEKYSVLRALRAIERSDVVLVVLDGEEGIIEQDKKIAGYAHDSGRAVIIVVNKWDA 230 >gi|257457196|ref|ZP_05622372.1| ribosome-associated GTPase EngA [Treponema vincentii ATCC 35580] gi|257445455|gb|EEV20522.1| ribosome-associated GTPase EngA [Treponema vincentii ATCC 35580] Length = 506 Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 142/465 (30%), Positives = 220/465 (47%), Gaps = 34/465 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + I G PNVGKSTLFNR ++K+ A+ PG+TRD + QAIING+ ++DT G + Sbjct: 62 VVIAGRPNVGKSTLFNRFLRKRRAITDPTPGVTRDPIEAQAIINGLPVRLMDTGGFKLTR 121 Query: 65 NCSIAKQMNDQ-----TELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 + M D+ T+ A+ A IL L+++ A T D FLR +I N Sbjct: 122 SGDKNDDMMDELVVEKTQDALRRADKILLLLEASAP-TAEDEEFIRFLRPYWDKLITAVN 180 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNK 179 K + + Y S F ++ ISAEH + L I K + Sbjct: 181 KTEGGRGEAEAYNYLSFGFPSLLCISAEHGDNITPLAEEITKGL-------------DFS 227 Query: 180 RNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITR 239 R E+P + +RIA++G+PN GKSTL N L + + +G TR Sbjct: 228 RVCEAPADT--------------AIRIALIGKPNTGKSTLSNYLTKTSASIVSDIAGTTR 273 Query: 240 DSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPF 299 D V + +K I DTAG+R+ +++ E +E +V ++M+S+ + L+DA Sbjct: 274 DVVEGEFFYKGRQFIIQDTAGIRRKTKVKEDIEYYSVVRAMKSLENADIVFHLIDAEEGL 333 Query: 300 EKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGR 359 +QD +I+ G V+ LNKWD+V + +D ++ I +S + Sbjct: 334 TEQDKKIIVQATKRGLGVIFVLNKWDLVKGE-KKFRDAEQYIKIMFGKMEYAPIVPVSAQ 392 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 G G+ DL+ + LE+ ++ TS LN L+ PPP + LKY+ Q Sbjct: 393 KGSGIPDLLNTALELFDQLTKKVETSALNLALKDWLEAVPPPHGQHNSFTLKYMLQTSVR 452 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 P FLIF P+ + ESY RY+ NR+R + + IP + + S+ Sbjct: 453 PVEFLIFANKPDLVSESYLRYISNRIRKDLGFTSIPFIVRVKGSR 497 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 40/124 (32%), Positives = 62/124 (50%), Gaps = 6/124 (4%) Query: 180 RNEESPKENITSEGKSSV--KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGI 237 R E P SEG K + PL + + GRPNVGKSTL NR L R +T G+ Sbjct: 35 RMETDPTTPEGSEGAFDYRKKYENTPL-VVIAGRPNVGKSTLFNRFLRKRRAITDPTPGV 93 Query: 238 TRDSVSISWNWKNHPIEIFDTAGM---RKPSRITESLEQKTVKKSMQSVRTCETTIVLLD 294 TRD + P+ + DT G R + + +++ V+K+ ++R + ++LL+ Sbjct: 94 TRDPIEAQAIINGLPVRLMDTGGFKLTRSGDKNDDMMDELVVEKTQDALRRADKILLLLE 153 Query: 295 ATIP 298 A+ P Sbjct: 154 ASAP 157 >gi|71894165|ref|YP_278273.1| GTP-binding protein EngA [Mycoplasma synoviae 53] Length = 438 Score = 200 bits (509), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 143/457 (31%), Positives = 228/457 (49%), Gaps = 41/457 (8%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAI+G PNVGKSTLFNRL +K+++V + PG+TRDRLY I+DT GI + Sbjct: 7 TIAIIGKPNVGKSTLFNRLNGRKISIVDDTPGVTRDRLYEVISWLNKEIKIIDTGGI-EI 65 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 KN +Q+ Q ++AI EA +I F+ D + I+ D I + LRK N ++ ++NK++ Sbjct: 66 KNAPFQEQIQIQAKIAIEEADVIFFVFDGHSEISNDDLFIMNILRKANKTVLALANKLE- 124 Query: 124 RIAQRNF-YEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 ++F Y Y L +I ISA H G E + Sbjct: 125 --GNKDFDYSWYKLGV-DIFPISALHGEGLGEAL-------------------------D 156 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 E+ K E KN+ +++++G+PN GKS+L+N+L R + G TRDSV Sbjct: 157 EACKHLFFEE-----KNLENNFKLSIIGKPNAGKSSLLNKLTNEYRSIVSEIPGTTRDSV 211 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATI-PFEK 301 K+ EI DTAG+ + S++ ES++ + ++M S+ + T+V++DATI Sbjct: 212 KSFLKIKDQNFEIIDTAGIMRKSKLVESVDHYALMRAMSSLVESDLTLVVIDATIDELSH 271 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTG 361 D RI+ +V+ +NKWD+V N + K + + + + IS ++G Sbjct: 272 FDSRIIGYALEHNKPIVIVINKWDLVEKNQNTMMQYEKKLREKMKFSSWMPVVFISAKSG 331 Query: 362 EGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLK--YITQIQSS 419 +D L+ ++L++ + I + L + + + QL P I N+ RL Y + +S Sbjct: 332 SRIDKLIDTILQVRENLNREIKPNLLANLILEAQL--IQPAISNKGGRLHIYYARKEKSK 389 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 P+F F SY R+L ++R NF G PI Sbjct: 390 IPTFTFFVNNKKYAHFSYMRFLEKQIRENFDFRGCPI 426 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/149 (28%), Positives = 76/149 (51%), Gaps = 7/149 (4%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + ++I+G PN GKS+L N+L + ++V PG TRD + I F I+DTAGI Sbjct: 173 FKLSIIGKPNAGKSSLLNKLTNEYRSIVSEIPGTTRDSVKSFLKIKDQNFEIIDTAGIM- 231 Query: 63 GKNCSIAKQMNDQTEL----AINEAHLILFLIDSKAG-ITPYDHAITSFLRKKNIPIIIV 117 + + + ++ + ++ E+ L L +ID+ ++ +D I + + N PI+IV Sbjct: 232 -RKSKLVESVDHYALMRAMSSLVESDLTLVVIDATIDELSHFDSRIIGYALEHNKPIVIV 290 Query: 118 SNKMDTRIAQRNFYEIYSLDFKEIVEISA 146 NK D +N Y +E ++ S+ Sbjct: 291 INKWDLVEKNQNTMMQYEKKLREKMKFSS 319 >gi|144574977|gb|AAZ43562.2| GTP-binding protein EngA [Mycoplasma synoviae 53] Length = 435 Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 143/457 (31%), Positives = 228/457 (49%), Gaps = 41/457 (8%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAI+G PNVGKSTLFNRL +K+++V + PG+TRDRLY I+DT GI + Sbjct: 4 TIAIIGKPNVGKSTLFNRLNGRKISIVDDTPGVTRDRLYEVISWLNKEIKIIDTGGI-EI 62 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 KN +Q+ Q ++AI EA +I F+ D + I+ D I + LRK N ++ ++NK++ Sbjct: 63 KNAPFQEQIQIQAKIAIEEADVIFFVFDGHSEISNDDLFIMNILRKANKTVLALANKLE- 121 Query: 124 RIAQRNF-YEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 ++F Y Y L +I ISA H G E + Sbjct: 122 --GNKDFDYSWYKLGV-DIFPISALHGEGLGEAL-------------------------D 153 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 E+ K E KN+ +++++G+PN GKS+L+N+L R + G TRDSV Sbjct: 154 EACKHLFFEE-----KNLENNFKLSIIGKPNAGKSSLLNKLTNEYRSIVSEIPGTTRDSV 208 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATI-PFEK 301 K+ EI DTAG+ + S++ ES++ + ++M S+ + T+V++DATI Sbjct: 209 KSFLKIKDQNFEIIDTAGIMRKSKLVESVDHYALMRAMSSLVESDLTLVVIDATIDELSH 268 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTG 361 D RI+ +V+ +NKWD+V N + K + + + + IS ++G Sbjct: 269 FDSRIIGYALEHNKPIVIVINKWDLVEKNQNTMMQYEKKLREKMKFSSWMPVVFISAKSG 328 Query: 362 EGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLK--YITQIQSS 419 +D L+ ++L++ + I + L + + + QL P I N+ RL Y + +S Sbjct: 329 SRIDKLIDTILQVRENLNREIKPNLLANLILEAQL--IQPAISNKGGRLHIYYARKEKSK 386 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 P+F F SY R+L ++R NF G PI Sbjct: 387 IPTFTFFVNNKKYAHFSYMRFLEKQIRENFDFRGCPI 423 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/149 (28%), Positives = 76/149 (51%), Gaps = 7/149 (4%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + ++I+G PN GKS+L N+L + ++V PG TRD + I F I+DTAGI Sbjct: 170 FKLSIIGKPNAGKSSLLNKLTNEYRSIVSEIPGTTRDSVKSFLKIKDQNFEIIDTAGIM- 228 Query: 63 GKNCSIAKQMNDQTEL----AINEAHLILFLIDSKAG-ITPYDHAITSFLRKKNIPIIIV 117 + + + ++ + ++ E+ L L +ID+ ++ +D I + + N PI+IV Sbjct: 229 -RKSKLVESVDHYALMRAMSSLVESDLTLVVIDATIDELSHFDSRIIGYALEHNKPIVIV 287 Query: 118 SNKMDTRIAQRNFYEIYSLDFKEIVEISA 146 NK D +N Y +E ++ S+ Sbjct: 288 INKWDLVEKNQNTMMQYEKKLREKMKFSS 316 >gi|325107065|ref|YP_004268133.1| ribosome-associated GTPase EngA [Planctomyces brasiliensis DSM 5305] gi|324967333|gb|ADY58111.1| ribosome-associated GTPase EngA [Planctomyces brasiliensis DSM 5305] Length = 450 Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 124/457 (27%), Positives = 225/457 (49%), Gaps = 21/457 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + IVG PNVGKS++FN + + ++VV G+TRDR+ A F ++DT GI Sbjct: 6 VVIVGRPNVGKSSIFNWIAGRMISVVDPTAGVTRDRITQLAHHGDRYFELIDTGGIGIVD 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + ++ + Q E+A+ EA LI+F++D G+TP D + LR+ + P ++V NK ++ Sbjct: 66 SDDLSDDVERQIEVALLEADLIMFVMDGLMGVTPLDLEVAEKLRRIDRPKLMVVNKCEST 125 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + Y L +++ S + + EL S + +EM+ + E Sbjct: 126 RTDLELPQFYGLADAPLLQTSVKANRNRKELMSKL------------VEMLPPAEDTEAE 173 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 E++++E + ++IA+VGR NVGKS+ IN L R++ +G TRDSV + Sbjct: 174 EGEDLSAEPE---------MKIAIVGRRNVGKSSFINALAQTERMIVSEIAGTTRDSVDV 224 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + + DT G+RK + +E + ++ +S+R ++ DAT K D Sbjct: 225 RFELDDKAFVAIDTPGVRKKKSLANDIEFYGLVRAQKSIRRANLVLMFFDATKTISKVDK 284 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 ++V+ + + +NKWD+ + + IK + + I I+ + G+ + Sbjct: 285 QLVEEIEKYYKPSIFVVNKWDLGLEGRMETEKWAEYLIKTFASMRHVPIAFITAKDGKNI 344 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 L+ + K + R++T LN +++ +NPPP N+ ++ Y TQ+ + PP+ + Sbjct: 345 RKLINLAQAVYKQGRIRVSTGKLNRVVEQAIDRNPPPMRRNKRPKIYYATQVATEPPTIV 404 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 + C P S+KRY + LR +PI++ F+ Sbjct: 405 VKCNDPILFDPSWKRYFLGFLREGLPFDEVPIKVYFR 441 Score = 43.1 bits (100), Expect = 0.098, Method: Compositional matrix adjust. Identities = 31/133 (23%), Positives = 61/133 (45%), Gaps = 6/133 (4%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP 264 ++ +VGRPNVGKS++ N + G + +G+TRD ++ + + E+ DT G+ Sbjct: 5 KVVIVGRPNVGKSSIFNWIAGRMISVVDPTAGVTRDRITQLAHHGDRYFELIDTGGI--- 61 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVL--LDATIPFEKQDLRIVDSVFNTGHAVVLALN 322 I +S + + V E +++ +D + DL + + + ++ +N Sbjct: 62 -GIVDSDDLSDDVERQIEVALLEADLIMFVMDGLMGVTPLDLEVAEKLRRIDRPKLMVVN 120 Query: 323 KWDMVSDKLNLLQ 335 K + L L Q Sbjct: 121 KCESTRTDLELPQ 133 >gi|10176988|dbj|BAB10220.1| GTP-binding protein-like [Arabidopsis thaliana] Length = 514 Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 140/473 (29%), Positives = 247/473 (52%), Gaps = 34/473 (7%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPG--ITRDRLYGQAIINGVIFNIVDTAGI-ADG 63 ++G PNVGKS L+NRL++++ A+V N P +TRD G A + + FN++D+AGI + Sbjct: 2 LMGRPNVGKSALYNRLIRRREALVYNTPDDHVTRDIREGIAKLGDLRFNVLDSAGIETEV 61 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKK--NIPIIIVSNKM 121 + +I + T + + +ID +AG+ P D + +LRK I I+V NK Sbjct: 62 SSGTILGRTTAMTANVLARTQFAVLIIDVRAGLHPLDLEVGKWLRKHAPQIKPIVVMNKS 121 Query: 122 DTRIAQRNFY-EIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 ++ + E +L F E + ISAE LG + L+ V+ + + ++ +EM+ N + Sbjct: 122 ESIGSLDEVASEALALGFGEPIAISAETGLGMTTLYEVLRPLLE----DYTVEML-NGSQ 176 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 ++ EN++ E + PL++A+VG+PNVGKSTL+N LL R+L G ++G+TRD Sbjct: 177 DDVLTDENLSDE----IDESKLPLQLAIVGKPNVGKSTLLNALLEEERVLVGPEAGLTRD 232 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDAT---- 296 +V + + ++ + + DTAG + + + ++ +S +S+ ++LDA Sbjct: 233 AVRVQFEFQGRTVYLVDTAGWLERTERDKGPASLSIMQSRKSLMRAHVIALVLDAEEIIK 292 Query: 297 --IPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKN---------L 345 ++ I G +V+ +NK D + + N K IK + Sbjct: 293 AKCSMTHSEVVIARRAVEEGRGLVVIVNKMDRLRGREN---SEMYKKIKEAVPIEIQTVI 349 Query: 346 PQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFN 405 PQI I + IS G G ++M V + K W +R++T LN WL+K ++ + Sbjct: 350 PQITGIPVVFISALEGRGRMEVMKEVTDTYKRWCSRLSTGRLNRWLRKVMSRHSWKDTAS 409 Query: 406 RYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 + ++K+ TQ+++ PP+F+ F + ++ ES R+L L+ +F L G PIR+ Sbjct: 410 Q-PKIKFFTQVKARPPTFVAFVSGKTQLLESDIRFLTRSLKEDFDLGGTPIRI 461 Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 48/148 (32%), Positives = 77/148 (52%), Gaps = 10/148 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD-- 62 +AIVG PNVGKSTL N L++++ +VG G+TRD + Q G +VDTAG + Sbjct: 198 LAIVGKPNVGKSTLLNALLEEERVLVGPEAGLTRDAVRVQFEFQGRTVYLVDTAGWLERT 257 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLID------SKAGITPYDHAITSFLRKKNIPIII 116 ++ A Q+ ++ AH+I ++D +K +T + I ++ +++ Sbjct: 258 ERDKGPASLSIMQSRKSLMRAHVIALVLDAEEIIKAKCSMTHSEVVIARRAVEEGRGLVV 317 Query: 117 VSNKMDTRIAQRNFYEIYSLDFKEIVEI 144 + NKMD R+ R E+Y KE V I Sbjct: 318 IVNKMD-RLRGRENSEMYK-KIKEAVPI 343 >gi|108799893|ref|YP_640090.1| GTP-binding protein EngA [Mycobacterium sp. MCS] gi|119869003|ref|YP_938955.1| GTP-binding protein EngA [Mycobacterium sp. KMS] gi|126435521|ref|YP_001071212.1| GTP-binding protein EngA [Mycobacterium sp. JLS] gi|108770312|gb|ABG09034.1| Small GTP-binding protein domain protein [Mycobacterium sp. MCS] gi|119695092|gb|ABL92165.1| small GTP-binding protein [Mycobacterium sp. KMS] gi|126235321|gb|ABN98721.1| small GTP-binding protein [Mycobacterium sp. JLS] Length = 471 Score = 200 bits (508), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 141/455 (30%), Positives = 220/455 (48%), Gaps = 34/455 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA-DG 63 +A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ A +G F + DT G D Sbjct: 37 VAVVGRPNVGKSTLVNRILGRREAVVQDIPGVTRDRVSYDATWSGRRFVVQDTGGWEPDA 96 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 K + + + DQ +A+ A I+ ++D+ G T D A LRK P+ + +NK+DT Sbjct: 97 KG--LQQLVADQATVAMRTADAIILVVDAVVGATAADEAAARMLRKSGKPVFLAANKVDT 154 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + ++SL + +SA H G ++L +H LE + Sbjct: 155 ERGEADAAALWSLGIGQPHSVSAIHGRGVADLL------------DHVLEKLPEV----- 197 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 P R+A+VG+PNVGKS+L+NRL G R + +G T D V Sbjct: 198 ----------SEVGGGSGGPRRVALVGKPNVGKSSLLNRLAGDERSVVHDVAGTTVDPVD 247 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 DTAG+R+ E ++ ++ E +VL+DA+ P +QD Sbjct: 248 SLIELGGKTWRFVDTAGLRRKVGQASGHEFYASVRTHGAIDAAEVVLVLIDASQPLTEQD 307 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 R++ V G A+VLA NKWD+V + L D + L Q+ IS TG Sbjct: 308 QRVLSMVIEAGRALVLAFNKWDLVDEDRRYLLDREID--RELAQVQWAPRVNISAMTGRA 365 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 + L+ ++ + W RI T LN++ ++ PPP + R+ + TQ + PP+F Sbjct: 366 VQKLVPALETALQSWDARIPTGRLNTFFKEIVAATPPPVRGGKQPRILFATQATARPPTF 425 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 ++F + + Y+R+L RLR F G PIR+ Sbjct: 426 VLFTS--GFLEAGYRRFLERRLRETFGFEGSPIRI 458 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 53/171 (30%), Positives = 81/171 (47%), Gaps = 12/171 (7%) Query: 203 PLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMR 262 P +AVVGRPNVGKSTL+NR+LG + G+TRD VS W + DT G Sbjct: 34 PPVVAVVGRPNVGKSTLVNRILGRREAVVQDIPGVTRDRVSYDATWSGRRFVVQDTGGWE 93 Query: 263 KPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALN 322 ++ L+Q ++ ++RT + I+++DA + D + +G V LA N Sbjct: 94 PDAK---GLQQLVADQATVAMRTADAIILVVDAVVGATAADEAAARMLRKSGKPVFLAAN 150 Query: 323 KWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 K D + + L +G +++S G G+ DL+ VLE Sbjct: 151 KVDTERGEAD---------AAALWSLGIGQPHSVSAIHGRGVADLLDHVLE 192 >gi|254431747|ref|ZP_05045450.1| GTP-binding protein EngA [Cyanobium sp. PCC 7001] gi|197626200|gb|EDY38759.1| GTP-binding protein EngA [Cyanobium sp. PCC 7001] Length = 441 Score = 200 bits (508), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 127/459 (27%), Positives = 229/459 (49%), Gaps = 39/459 (8%) Query: 13 VGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNCSIAKQM 72 +GKSTL NRL + + A+V + PG+TRDR Y + F +VDT G+ + ++ Sbjct: 1 MGKSTLVNRLCRSREAIVHDQPGVTRDRTYQEGFWGDRTFRVVDTGGLVFDDDSEFLPEI 60 Query: 73 NDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQRNF-Y 131 +Q LA+ EA + L ++D + G T D AI ++LR +N+P+++ NK ++ A Sbjct: 61 REQANLALAEASVALVIVDGQQGCTAADEAIAAWLRGQNVPVLLAVNKCESPEAGLAMAA 120 Query: 132 EIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEESPKENITS 191 E + L E ISA H GT +L + ++ P +EE Sbjct: 121 EFWGLGLGEPHPISAIHGAGTGDL---LDQVIGHLPPTQ----------DEEG------- 160 Query: 192 EGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNH 251 +P+++A++GRPNVGKS+L+N + G NR + G TRD++ + + Sbjct: 161 ---------EEPIQLAIIGRPNVGKSSLLNAVCGENRAIVSPIRGTTRDTIDTTIEREGK 211 Query: 252 PIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVF 311 ++ DTAG+R+ + E + +S +++ + ++++DA +QD R+ + Sbjct: 212 TWKLLDTAGIRRRRSVNYGPEFFGINRSFKAIERSDVCVLVIDALDGVTEQDQRLAGRIE 271 Query: 312 NTGHAVVLALNKWDMVSDKLNLL----QDLRTKAIKNLPQIGDIYINTISGRTGEGLDDL 367 G A V+ +NKWD + + + ++LR K + L ++ + +SG+ + + L Sbjct: 272 EDGRACVVVVNKWDAIEKDSHTMPAMEKELRAK-LYFLDWAPMLFTSALSGQRVQAIFPL 330 Query: 368 MVSVLEINKLWKTRITTSYLNSWL-QKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFLIF 426 + +E + + R+TTS +N L + + PP + R RL Y TQ+ PPSF +F Sbjct: 331 ALLAVEQH---RRRVTTSVVNEVLTEALSWRTPPTSRGGRQGRLYYGTQVAVRPPSFTLF 387 Query: 427 CTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 P ++Y+RY+ ++R G PI++ ++ + Sbjct: 388 VNDPKLFGDTYRRYVERQIREGLGFEGTPIKLFWRGKQQ 426 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 62/121 (51%), Gaps = 2/121 (1%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKS+L N + + A+V G TRD + G + ++DTAGI + Sbjct: 166 LAIIGRPNVGKSSLLNAVCGENRAIVSPIRGTTRDTIDTTIEREGKTWKLLDTAGIRRRR 225 Query: 65 NCSIAKQMN--DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + + + +++ AI + + + +ID+ G+T D + + + ++V NK D Sbjct: 226 SVNYGPEFFGINRSFKAIERSDVCVLVIDALDGVTEQDQRLAGRIEEDGRACVVVVNKWD 285 Query: 123 T 123 Sbjct: 286 A 286 >gi|255086559|ref|XP_002509246.1| predicted protein [Micromonas sp. RCC299] gi|226524524|gb|ACO70504.1| predicted protein [Micromonas sp. RCC299] Length = 468 Score = 199 bits (507), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 141/477 (29%), Positives = 239/477 (50%), Gaps = 48/477 (10%) Query: 11 PNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD-------- 62 PNVGKS LFNRL K A+V + PG+TRDR+Y +A F +VDT G+ Sbjct: 8 PNVGKSALFNRLTGTKRAIVYDQPGVTRDRMYIRAFWGDTEFMMVDTGGLESLPGSPEDA 67 Query: 63 ------GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRK--KNIPI 114 G + + Q LA+NEA ++ + D + G+T D I ++RK P+ Sbjct: 68 PSVDTVGGFEILPGMVESQAALAVNEAAALIMVCDGQKGLTNADEEIYGWIRKYHSKKPL 127 Query: 115 IIVSNKMD-TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLE 173 ++ NK + T + + +SL + +SA GT EL + P E Sbjct: 128 LLAVNKCESTTKGEEQVLDFWSLGGPTPLAVSAISGTGTGELLDGLVAALPPPSP----E 183 Query: 174 MIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGS 233 ++ + ++EE PL++A++GRPNVGKS+L+N+L G R + Sbjct: 184 DLDPSWKDEEG----------------DGPLKVAIIGRPNVGKSSLLNQLAGDARSIVSD 227 Query: 234 QSGITRDSVS---ISWNWKNHPIEIFDTAGMRKPSRITESL---EQKTVKKSMQSVRTCE 287 SG TRD++ I + K + + DTAG+R+ + + S E V +++Q++R + Sbjct: 228 YSGTTRDTIDSDVIGADGKKY--TLIDTAGIRRRTSVAASKDAPESLAVGRALQAMRRAD 285 Query: 288 TTIVLLDATIPFEKQDLRIVD-SVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLP 346 ++++DA +QD + + + G A+VL +NKWD + DK + TK +++ Sbjct: 286 VVVLVIDAEEGPSQQDFVLSERAAVQEGCALVLCVNKWDRI-DKDTYSMNEYTKTLRSKL 344 Query: 347 QIGD-IYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFN 405 ++ + + S TG+ + ++ + E + + R++T+ LNS +Q+ L PP+ Sbjct: 345 RVFEWASVVYTSALTGQRVQKVLQAAAEASVHHRKRLSTATLNSVIQEATLWKSPPSKAG 404 Query: 406 RYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 R R+ Y+TQ + PP+F+ F P P++YKRY+ LR N G PIR+ ++ Sbjct: 405 RKGRVYYVTQASTRPPTFVFFVNDPKLFPDTYKRYMERSLRDNIGFPGSPIRILWRG 461 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/127 (28%), Positives = 67/127 (52%), Gaps = 11/127 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAI-INGVIFNIVDTAGIADG 63 +AI+G PNVGKS+L N+L ++V ++ G TRD + I +G + ++DTAGI Sbjct: 200 VAIIGRPNVGKSSLLNQLAGDARSIVSDYSGTTRDTIDSDVIGADGKKYTLIDTAGIR-- 257 Query: 64 KNCSIAKQMNDQTELAIN-------EAHLILFLIDSKAGITPYDHAITSFLR-KKNIPII 115 + S+A + LA+ A +++ +ID++ G + D ++ ++ ++ Sbjct: 258 RRTSVAASKDAPESLAVGRALQAMRRADVVVLVIDAEEGPSQQDFVLSERAAVQEGCALV 317 Query: 116 IVSNKMD 122 + NK D Sbjct: 318 LCVNKWD 324 >gi|116515306|ref|YP_802935.1| EngA [Buchnera aphidicola str. Cc (Cinara cedri)] gi|116257160|gb|ABJ90842.1| GTP-binding protein [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 449 Score = 199 bits (507), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 156/476 (32%), Positives = 232/476 (48%), Gaps = 37/476 (7%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI IA++G NVGKS+LFN L K A+ + P TRDR YG I NI+DTAGI Sbjct: 1 MILNIALIGKSNVGKSSLFNLLTNSKSALTSDLPSTTRDRQYGFLKIKEKKINIIDTAGI 60 Query: 61 ADGKNCS---IAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIV 117 + K I KQ QT LAI E HLI FL+D++ +T D+ I +RK+N I ++ Sbjct: 61 NNIKRKFFNLIEKQAYKQTILAIQEFHLIFFLVDARYELTIVDYFILKLIRKENKNIFLL 120 Query: 118 SNKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 NK+D + +F + Y+L K I +IS H +G L I+ K++ +EN Sbjct: 121 INKIDLMKRENSFIDFYNLGIKNIFKISVIHKIGYLNLLKNIYNFLKKR---EKKIFLEN 177 Query: 178 NKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGI 237 NK N+ ++I +G+ N GKSTLIN LL NR++T S Sbjct: 178 NKINKYIN------------------IKICFLGKTNAGKSTLINSLLNSNRVITSSTKNT 219 Query: 238 TRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATI 297 TRD + IS K DTAG+ K + + L KKS V+ + I+++D+ + Sbjct: 220 TRDMIEISLINKKIKYIFTDTAGINKKRKKKDFLNYIFEKKSFDVVKKNQIAIIVIDSYV 279 Query: 298 PFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKN-----LPQIGDIY 352 +DL I+ + N A + NKWD++S + R K IK L I +I Sbjct: 280 GISSKDLSIITFLINQNVAFFIIFNKWDLISKE-------RKKKIKQENKYRLKFIRNIK 332 Query: 353 INTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQK-TQLQNPPPTIFNRYNRLK 411 I +S L + + + I K +TS L + K T+ + P + + +LK Sbjct: 333 IIYLSAIKKTNLKKIFLQIKIIYNESKKIFSTSSLIKIINKATKKHSLPMGVTGKIIKLK 392 Query: 412 YITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 Y + +P +I T I ++YK+YLI L+ + PI++ F++ KNPY Sbjct: 393 YAHLGRKNPIFIIIHGTQVQYISQTYKKYLIRFLQKELKIPNTPIKLFFKNKKNPY 448 >gi|307720282|ref|YP_003891422.1| ribosome-associated GTPase EngA [Sulfurimonas autotrophica DSM 16294] gi|306978375|gb|ADN08410.1| ribosome-associated GTPase EngA [Sulfurimonas autotrophica DSM 16294] Length = 492 Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 148/500 (29%), Positives = 244/500 (48%), Gaps = 55/500 (11%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAI+G PNVGKS+LFNRLVKK+ A+ + G TRD A+I ++DT G+ G Sbjct: 4 IAIIGRPNVGKSSLFNRLVKKRDAITSDLAGTTRDVKRKTALIIDKEAELLDTGGLDKG- 62 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 C + ++ + + A +A +ILF++D K D + L+ I +V NK+D Sbjct: 63 -CELFDKIKEMSLKAAYKADIILFMVDGKGLPEEEDKKLFYELQAMGKDIALVVNKIDND 121 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPL--EMIENNKR-- 180 + +E Y I IS H+ T EL I+ K P + E ENN + Sbjct: 122 KMKEKLWEFYEFGTDAIFGISVAHNRNTVELLDWIY----DKLPESDILKEEDENNVQIV 177 Query: 181 -----------------------------NEESPKENITSEG---KSSVKNISKPLRIAV 208 EE ++I ++ K +N ++IA+ Sbjct: 178 EEEKEELSDEEFFSQYAEDEEDDGYIYWDEEEIEDDSIFAQNDRIKEFDENDINHIKIAI 237 Query: 209 VGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRIT 268 +GR NVGKS+L+N LLG R + S +G T D + + +K+ + DTAG+R+ +I Sbjct: 238 IGRTNVGKSSLLNALLGEERSVVSSVAGTTIDPIDETIVYKDKQLTFVDTAGLRRRGKIV 297 Query: 269 ESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMV- 327 +E+ + ++ + + +V+LDA+ PF D +I V A ++ LNKWD+ Sbjct: 298 -GIEKFALMRTKEMLENANMALVVLDASEPFLDLDEKIAGLVDQNRLACIIVLNKWDIAK 356 Query: 328 -SDKLNLLQDLRT--KAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITT 384 D +++++R K + P I T+S ++ + +D L +LEIN+ + RI T Sbjct: 357 REDHDKIIKEVRDRFKFLAYAPII------TLSAKSHQRVDKLHDMILEINENYSQRIPT 410 Query: 385 SYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINR 444 S LN +++ ++ P++ + R+ Y TQ ++ PP I P + +Y+RYL N+ Sbjct: 411 SQLNEVVERALRRHTLPSMHGQVIRIYYATQYETRPPKIAIVMNKPKGLHFTYRRYLTNK 470 Query: 445 LRINFSLSGIPIRMCFQSSK 464 LR F+ SG P + F++ K Sbjct: 471 LREAFNFSGTP--LLFKAKK 488 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 65/121 (53%), Gaps = 4/121 (3%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP 264 +IA++GRPNVGKS+L NRL+ +T +G TRD + + E+ DT G+ K Sbjct: 3 KIAIIGRPNVGKSSLFNRLVKKRDAITSDLAGTTRDVKRKTALIIDKEAELLDTGGLDKG 62 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 + + +++ ++K + ++ + + ++D E++D ++ + G + L +NK Sbjct: 63 CELFDKIKEMSLKAAYKA----DIILFMVDGKGLPEEEDKKLFYELQAMGKDIALVVNKI 118 Query: 325 D 325 D Sbjct: 119 D 119 >gi|218661715|ref|ZP_03517645.1| GTP-binding protein EngA [Rhizobium etli IE4771] Length = 244 Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 98/231 (42%), Positives = 147/231 (63%), Gaps = 7/231 (3%) Query: 23 VKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNCSIAKQMNDQTELAINE 82 + KK+A+V + PG+TRDR G+A + G+ F I+DTAG+ + S+ +M QTE AI+E Sbjct: 1 MGKKLALVDDTPGVTRDRRPGEARLMGLNFTIIDTAGLEEADEESLQGRMRAQTEAAIDE 60 Query: 83 AHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQRNFYEIYSLDFKEIV 142 A L LF++D+K G+TP D A+ LR++ P+++V+NK + R + FY+ Y+L E Sbjct: 61 ADLSLFVVDAKNGLTPVDTALAEMLRRRGKPVVLVANKSEARGSDSGFYDAYTLGLGEPT 120 Query: 143 EISAEHDLGTSELHSVIFKIF--KQKYPNHPLEMIENNKRNEESPKENIT-SEGKSSVKN 199 ISAEH G +L I + + Y + + + + P EN T E + + + Sbjct: 121 PISAEHGEGMLDLRDAIVEAIGKDRAYAKEDVAVTDVDI----PPGENETDGEDEEPIYD 176 Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKN 250 +KPLR+A+VGRPN GKSTLINR LG +RLLTG ++GITRDS+S+ W+W+ Sbjct: 177 DTKPLRVAIVGRPNAGKSTLINRFLGEDRLLTGPEAGITRDSISVEWDWRG 227 Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust. Identities = 19/35 (54%), Positives = 23/35 (65%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRD 39 +AIVG PN GKSTL NR + + + G GITRD Sbjct: 183 VAIVGRPNAGKSTLINRFLGEDRLLTGPEAGITRD 217 >gi|242069257|ref|XP_002449905.1| hypothetical protein SORBIDRAFT_05g025430 [Sorghum bicolor] gi|241935748|gb|EES08893.1| hypothetical protein SORBIDRAFT_05g025430 [Sorghum bicolor] Length = 684 Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 148/536 (27%), Positives = 256/536 (47%), Gaps = 102/536 (19%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 ++ +AI+G PNVGKS LFNRLV A+V + PG+TRDRLYG++ F ++DT G+ Sbjct: 157 LLPKVAIIGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRLYGRSYWGDQEFMVIDTGGV 216 Query: 61 ---------------------ADG-----KNCSIAK---QMNDQTELAINEAHLILFLID 91 DG + +IA+ + Q A++EA +ILF++D Sbjct: 217 ITLSKSQAGVMEELAVTTTVGMDGIPLATREAAIARMPSMIEKQAVAAVDEASVILFVVD 276 Query: 92 S-------------------------KAGITPYDHAITSFLRK--KNIPIIIVSNKMDT- 123 +AG+ D I+ +LR+ + +I+ NK ++ Sbjct: 277 GQAEIVVLIISYVSSVFTSIMVPNIFQAGLVAADIEISDWLRRNYSDKCVILAVNKCESP 336 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 R Q + +SL F + ISA GT +L ++ ++ L+ +E K Sbjct: 337 RKGQMQALDFWSLGFSPL-PISAITGTGTGDLLDLVCSELRK---FEGLDTVEEEK---- 388 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 +K IA+VGRPNVGKS+++N L+G +R + SG TRD++ Sbjct: 389 -----------------NKVPAIAIVGRPNVGKSSILNALVGEDRTIVSPVSGTTRDAID 431 Query: 244 ISWNWKN-HPIEIFDTAGMRKPSRI------TESLEQKTVKKSMQSVRTCETTIVLLDAT 296 + + ++ DTAG+R+ + + TESL +VK++ +++R + ++++A Sbjct: 432 TEFTTADGEKYKLIDTAGIRRRAAVISAGSTTESL---SVKRAFRAIRRSDVVALVIEAM 488 Query: 297 IPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDK-----LNLLQDLRTKAIKNLPQIGDI 351 +QD +I + + G A V+ +NKWD + +K + QD+R K ++ L + Sbjct: 489 ACVTEQDYKIAERIEKEGKACVIVVNKWDTIPNKNHESTTHYEQDVREK-LRILDWAPIV 547 Query: 352 YINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPP-TIFNRYNRL 410 Y S G ++ ++ + + K R+ TS LN +++ PPP T + R+ Sbjct: 548 Y---CSATNGTSVEKIISAAALVEKERSRRLGTSILNQVIREAIAFKPPPRTRGGKRGRV 604 Query: 411 KYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNP 466 Y TQ PP+F++F P++Y+RY+ +LR + G PIR+ ++S + P Sbjct: 605 YYTTQAAIGPPTFVLFVNDAKLFPDTYRRYMEKKLRSDAGFPGTPIRLLWRSRRRP 660 >gi|319760649|ref|YP_004124587.1| GTP-binding protein engA [Candidatus Blochmannia vafer str. BVAF] gi|318039363|gb|ADV33913.1| GTP-binding protein engA [Candidatus Blochmannia vafer str. BVAF] Length = 478 Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 153/480 (31%), Positives = 246/480 (51%), Gaps = 31/480 (6%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 ++ + +VG NVGKSTLFNRL + A+V ++ G+TRDR YG IVDT G+ Sbjct: 6 LFIVVLVGQKNVGKSTLFNRLTQNYRALVADYFGVTRDRQYGYIQHKNDKCIIVDTGGVD 65 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRK--KNIPIIIVSN 119 + + + +N QT LAI EA ++LF+++ +A + D+ I LRK KN I +V N Sbjct: 66 ESSDSFLQNAINYQTNLAIREADIVLFVVNGRAYESSIDYNIIGNLRKLGKN-NIFVVIN 124 Query: 120 KMDT-RIAQRNF---YEIYSLDFKEIVEISAEHDLGTSELHSVIF-KIFKQKYPNHPLEM 174 K+D R +N Y YS KE++ ISA H G L IF KI K+ + + + Sbjct: 125 KIDNFRFKNKNLETKYSYYSFGIKEVIVISAMHGYGIDILLDKIFLKIKKEVFLDKKNTL 184 Query: 175 IENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQ 234 +K+N+++ ++ SE S +++AVVGRPN GKST IN ++ +R++T S Sbjct: 185 CLIDKKNKKTV--SLVSENNS--------IKLAVVGRPNSGKSTFINYVVQESRVITSSI 234 Query: 235 SGITRDSVSISWNWKNHPIEIFDTAGMRKP-SRITESL-EQKTVKKSMQSVRTCETTIVL 292 G TRDSV I N + DTAG+R+ ++ ++L E+ +V K+ Q ++ +++ Sbjct: 235 PGTTRDSVYIPIICYNQKYMLIDTAGIRRGNNKYIDNLPERISVLKTFQVIKDAHVILLI 294 Query: 293 LDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVS-----DKLNLLQDLRTKAIKNLPQ 347 +D QDL +++ + G ++V+ALNKWD S K +LQ L K N Sbjct: 295 IDINEGIVDQDLSLLNFIIRHGRSLVIALNKWDNFSPLIKNSKSIILQSLTRKL--NFLG 352 Query: 348 IGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRY 407 + ++ IS G G+ L S+ +I+ I T +L S + K + PP + Sbjct: 353 FSTVKMHFISSLYGYGVKLLFKSIEKIHFDASKIINTVFLTSIMNKAITECTPPFVSKVR 412 Query: 408 N----RLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSS 463 + KY+ P + +I+ T N++P Y++YL + GI + F+ Sbjct: 413 GGGIPKFKYVHIGGYDPITIIIYGTQINRLPNEYRKYLKKYFCRALNFDGIFFHLKFKEG 472 >gi|217967546|ref|YP_002353052.1| small GTP-binding protein [Dictyoglomus turgidum DSM 6724] gi|217336645|gb|ACK42438.1| small GTP-binding protein [Dictyoglomus turgidum DSM 6724] Length = 436 Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 138/467 (29%), Positives = 240/467 (51%), Gaps = 55/467 (11%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 ++IVG PNVGKS LFNR+V ++ A+V + PG+TRD L G F +VD+AG G Sbjct: 7 VVSIVGRPNVGKSVLFNRIVGEEKAIVADEPGVTRDPLVHLCEHEGKYFYLVDSAGW--G 64 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 +++ + ++ + IN + LILF++D ++ +T DH LRK +I+V NKM+ Sbjct: 65 LTDDLSELIQEKIQEVINISDLILFVVDGRSELTALDHEFVDILRKSGKRVILVVNKMEG 124 Query: 124 RIAQRNFYEIY-SLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 RI + + + +L E ISA H EL +I + Sbjct: 125 RIDREEYLAPFTALGLGEPFPISALHKQNLYELLDLIISLIP------------------ 166 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 +P+E ++SE KS +++A VGRPN GKS+L+N L+G +R + G TRD+V Sbjct: 167 -APEE-VSSEDKS--------IKLAFVGRPNSGKSSLLNALIGRDRSIVSEIPGTTRDAV 216 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + W++ I DT G+R+P+++ E LE+ +V+K++Q++R + I+++D ++ +Q Sbjct: 217 DLIWDFNGKKYIIVDTPGLRRPAKVEEGLEELSVQKTLQTIRRIDIAIMVIDLSVGIREQ 276 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGD-------IYINT 355 + RI+ + + G + ++ NK D++ L++ R + K +PQI I+ + Sbjct: 277 EKRILHYIEDKGKSCLIVFNKTDLIPS----LKE-RREFEKIVPQILQPFDYFPFIFTSA 331 Query: 356 ISGRTGEGLDDLMVSVLEINKLWKTRITTSYLN----SWLQKTQLQNPPPTIFNRYNRLK 411 I + ++ V ++ +L RI TS +N L KT + ++ Sbjct: 332 IRNYN---VKKILPWVDKLFELRNMRIPTSQINRAIGEALSKTNFSKK-----GKILKIY 383 Query: 412 YITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 Y TQ+ +PP+ + F P + ++ +Y LR F G PI++ Sbjct: 384 YATQVDVAPPTIVFFVNEPEIMNKNVVKYFEKFLRNYFGWVGTPIKI 430 >gi|291533878|emb|CBL06991.1| ribosome-associated GTPase EngA [Megamonas hypermegale ART12/1] Length = 401 Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 124/420 (29%), Positives = 213/420 (50%), Gaps = 40/420 (9%) Query: 52 FNIVDTAGIA---DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLR 108 F ++DT GI DG+ +A M Q LAI EA +I+F++D + G+T D I LR Sbjct: 10 FTMIDTGGIELENDGEGKILA-SMRQQARLAIEEADVIVFMVDGRTGMTHDDEEIGHILR 68 Query: 109 KKNIPIIIVSNKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYP 168 P+I+ NK+D+ + YE Y+L E + ISA + L +L + Sbjct: 69 NTRKPVIVAVNKIDSPKQHLDVYEFYNLGLGEPIGISAANALNVGDL-------LDEIVA 121 Query: 169 NHPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNR 228 N P ++ ++ + +E +RIAV+GRPNVGKS+L+N LLG R Sbjct: 122 NFPKDLEDDIEHDE---------------------IRIAVIGRPNVGKSSLVNALLGQER 160 Query: 229 LLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCET 288 ++ +G TRD++ ++ N + DTAGMR+ +I +E+ +V +S+++V + Sbjct: 161 VIVSDVAGTTRDAIDTKFDDGNTHFTLIDTAGMRRKGKIDMPIERYSVMRSLRAVDRADV 220 Query: 289 TIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMV--SDK--LNLLQDLRTKAIKN 344 ++++ A +QD +I +G ++ +NKWD++ DK L +D+R + + Sbjct: 221 VLMVISAPEGVTEQDKKIAGYAHESGKGCIIVVNKWDLIEKDDKTSLRFTEDIRDE-LGF 279 Query: 345 LPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIF 404 L +Y + ++ + + DL+ V E + R+ TS LN + NPPP+ Sbjct: 280 LQYAPVLYTSALTKQRVHRVVDLVKYVAEQQAM---RVQTSVLNQLVMDAVSINPPPSHK 336 Query: 405 NRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 + ++ ++TQ PP FL+F P + SY R+L N+LR +F G P+++ + K Sbjct: 337 GKQLKIYFMTQADIKPPKFLVFVNDPELMHFSYLRFLENKLRESFGFEGTPLKLVVRGRK 396 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 65/120 (54%), Gaps = 2/120 (1%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI-ADG 63 IA++G PNVGKS+L N L+ ++ +V + G TRD + + F ++DTAG+ G Sbjct: 138 IAVIGRPNVGKSSLVNALLGQERVIVSDVAGTTRDAIDTKFDDGNTHFTLIDTAGMRRKG 197 Query: 64 K-NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 K + I + ++ A++ A ++L +I + G+T D I + + IIV NK D Sbjct: 198 KIDMPIERYSVMRSLRAVDRADVVLMVISAPEGVTEQDKKIAGYAHESGKGCIIVVNKWD 257 >gi|154149467|ref|YP_001405674.1| GTP-binding protein EngA [Campylobacter hominis ATCC BAA-381] gi|166224322|sp|A7HZI3|DER_CAMHC RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|153805476|gb|ABS52483.1| GTP-binding protein EngA [Campylobacter hominis ATCC BAA-381] Length = 460 Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 130/456 (28%), Positives = 237/456 (51%), Gaps = 17/456 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFN----IVDTAGI 60 + ++G PNVGKS+LFNR V K++A+ + G TRD + +I IF+ ++D+ G+ Sbjct: 4 VILIGRPNVGKSSLFNRFVGKRIAITSDISGTTRDT--NKTVIE--IFDKKCILIDSGGL 59 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 D + + ++ +T + +ILF++D K + + + N P+ +V NK Sbjct: 60 DD--SSEMFAKVQAKTLKEVRNCDIILFIVDGKFMPSDDEKKLFHSFSGLNKPLALVINK 117 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D++ + +E K+ IS H+ G E+ S I+K+ + E ++ Sbjct: 118 IDSKKDEERSFEFIEFGAKDKFNISVSHNDGIDEVKSWIYKLLDDEISADESENFDDFIS 177 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 N + E + + +S +N KP+++ ++GR NVGKS+L+N L+ NR + +G T D Sbjct: 178 NLDENGEILEEKDESFYEN--KPIKVGIIGRVNVGKSSLLNALVKENRAVVSEVAGTTID 235 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 V+ ++ + + IE DTAG+RK +I E +E+ + ++ + + C+ +++LDA+ PF Sbjct: 236 PVNENYTFNDKVIEFVDTAGIRKRGKI-EGIEKFALNRTEKILEQCDIALMVLDASEPFS 294 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 + D RI V++ LNKWD + + +Q + L I ++ + G+ Sbjct: 295 ELDERIAGLAAKFELGVIIVLNKWDKSEEDFDKVQKKIKDKFRFLSYAPIISVSALGGKR 354 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 + D+ +LEI + +I TS LN ++ + Q+P P + ++ Y QI +P Sbjct: 355 IHKIYDM---ILEIYANFTQKIATSKLNDFIAEATAQHPIPQDKGKNVKIYYAAQIGFAP 411 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 P + + SYKRYLIN++R NF+L+G P+ Sbjct: 412 PKIALVMN-RTVLHFSYKRYLINQMRENFTLNGTPV 446 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/126 (26%), Positives = 61/126 (48%), Gaps = 4/126 (3%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP 264 ++ ++GRPNVGKS+L NR +G +T SG TRD+ + + D+ G+ Sbjct: 3 KVILIGRPNVGKSSLFNRFVGKRIAITSDISGTTRDTNKTVIEIFDKKCILIDSGGLDDS 62 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 S + ++ KT+K+ VR C+ + ++D + ++ S + L +NK Sbjct: 63 SEMFAKVQAKTLKE----VRNCDIILFIVDGKFMPSDDEKKLFHSFSGLNKPLALVINKI 118 Query: 325 DMVSDK 330 D D+ Sbjct: 119 DSKKDE 124 >gi|195952865|ref|YP_002121155.1| small GTP-binding protein [Hydrogenobaculum sp. Y04AAS1] gi|195932477|gb|ACG57177.1| small GTP-binding protein [Hydrogenobaculum sp. Y04AAS1] Length = 429 Score = 197 bits (500), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 128/459 (27%), Positives = 230/459 (50%), Gaps = 40/459 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 I I G NVGKSTLFN++ K+++++V N PGITRD + +A+ +F +VDT G+ D K Sbjct: 4 IVITGRANVGKSTLFNKISKRRISIVENIPGITRDVIESKAVFQDKVFKLVDTGGLTDSK 63 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I++ + D+ EA+ I+F++D K G+ P D I L + + NK D++ Sbjct: 64 E-EISQAIRDKVLKLYKEAYKIIFVVDGKTGLMPEDKDIAKLLYPYKEKVYVAVNKTDSK 122 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 A + E Y L F + EISA H G EL LE I + + E Sbjct: 123 KASAS--EFYELGFDNVFEISATHGTGVFEL----------------LEEITKDLKAMEE 164 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 +E + ++++ VG+PN GKS+L+N +L +R++ + +G TRD+V + Sbjct: 165 LEEK------------ADFIKLSFVGKPNSGKSSLLNSILKQDRVIVSNIAGTTRDAVDV 212 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 ++++ + DTAG+R+PS I +E V +S++++ + +++DAT +QD+ Sbjct: 213 EFSYEGKDFILVDTAGIRRPSNIDYGVEFFAVNRSLEAIEKSDVCALVIDATEGVSRQDM 272 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 R+ V G +++ LNK D++ D ++ L+ K L + +S + G + Sbjct: 273 RLASLVNRKGKGLIVVLNKIDLIKD----IEALKKHVDKKLEFVYFAPRVYVSAKEGINV 328 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLK-YITQIQSSPPSF 423 ++ ++I + + I TSY+N ++K + P N +K Y T PP+ Sbjct: 329 FSILQKAIDIYEEYSKPIKTSYVNRVVEKILEEYPQ----NSTKSIKVYYTVFSPKPPTI 384 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 ++ + E Y R+ +LR +++ P+ + + Sbjct: 385 VLHTNNKDFWREDYLRFFEKKLREKLNINYAPLNIILKE 423 Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust. Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 3/121 (2%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP 264 +I + GR NVGKSTL N++ + + GITRD + +++ ++ DT G+ Sbjct: 3 KIVITGRANVGKSTLFNKISKRRISIVENIPGITRDVIESKAVFQDKVFKLVDTGGLTDS 62 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 E + Q K ++ + I ++D +D I ++ V +A+NK Sbjct: 63 K---EEISQAIRDKVLKLYKEAYKIIFVVDGKTGLMPEDKDIAKLLYPYKEKVYVAVNKT 119 Query: 325 D 325 D Sbjct: 120 D 120 >gi|332298977|ref|YP_004440899.1| GTP-binding protein engA [Treponema brennaborense DSM 12168] gi|332182080|gb|AEE17768.1| GTP-binding protein engA [Treponema brennaborense DSM 12168] Length = 497 Score = 197 bits (500), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 133/476 (27%), Positives = 229/476 (48%), Gaps = 49/476 (10%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA-DG 63 + I G PNVGKSTLFNR+++K+ A+ PG+TRD + A ING ++DT G D Sbjct: 52 VVIAGRPNVGKSTLFNRILRKRRAITDPTPGVTRDPIEETAFINGCPVRLMDTGGFKLDR 111 Query: 64 KNCSIAKQMNDQTELAINEAHLIL------FLIDSKAGITPYDHAITSFLRKKNIPIIIV 117 +N ++ M+ EL + + L L+ +T D + LR +I Sbjct: 112 ENGTMEALMD---ELVVEQTLRALKNADLVLLLLDAGLVTGEDEEFIALLRPYWHKVIAA 168 Query: 118 SNKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 NK + + + F ++ ISAEH EL +I K N +E Sbjct: 169 VNKTEGGRLEEEAWNYMRFGFDNLLFISAEHGDRIPELSELIVK-------NLDFSRVER 221 Query: 178 NKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGI 237 ++ +KP+R+A++G+PN GKSTL N+L + +G Sbjct: 222 DES--------------------AKPIRVAIMGKPNTGKSTLSNKLTHTQASIVCDYAGT 261 Query: 238 TRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATI 297 TRD V S+ +++ + DTAG+R+ +R++E++E +V ++++++ + +++DA Sbjct: 262 TRDVVEGSFTYQDTAFLVLDTAGIRRKARVSENIEYYSVNRAIKTLDDTDVVFLMIDAQE 321 Query: 298 PFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRT--KAIKNLP----QIGDI 351 +QD +I + G V+ LNKWD QD +T +A +NL + Sbjct: 322 GLAEQDKKIAALAYERGRGVIFVLNKWDTQE------QDRKTLKRAEENLKIMFGHMSYA 375 Query: 352 YINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLK 411 + +S G+G +L+ + +E+ +I T LN+ L+ PPP +++ Sbjct: 376 PVVAVSALEGKGFKNLLNTAIELYGQLTRKIETGVLNTALKDWVSAYPPPASRASQFKIR 435 Query: 412 YITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 Y+ Q +P SFL+F + P +PESY YL N++R + IP+ + +SS+ + Sbjct: 436 YMVQTSVNPVSFLLFASRPEVVPESYLSYLKNKIRSDLGFDKIPVLLELKSSRKKW 491 >gi|224438499|ref|ZP_03659419.1| GTP-binding protein EngA [Helicobacter cinaedi CCUG 18818] gi|313144927|ref|ZP_07807120.1| GTP-binding protein engA [Helicobacter cinaedi CCUG 18818] gi|313129958|gb|EFR47575.1| GTP-binding protein engA [Helicobacter cinaedi CCUG 18818] Length = 527 Score = 197 bits (500), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 138/470 (29%), Positives = 248/470 (52%), Gaps = 16/470 (3%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAI+G PNVGKS+LFNRL+K+ +A+ N G TRD I+GV ++DT G+ Sbjct: 3 TIAILGKPNVGKSSLFNRLIKQHLAITSNVSGTTRDVKKACFEISGVDVELIDTGGL--D 60 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNI--PIIIVSNKM 121 K + ++++ + A EA L+L+++D + P D I F + + + P+I+V NK+ Sbjct: 61 KAQGLFAKVSENSLKAGAEADLVLYMVD--GSLLPQDDDIAYFRKIQRLQKPLILVVNKV 118 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF---KIFKQKYPNHPLE-MIEN 177 D ++ ++ S K++ IS +H+ G S L ++F + K++ N L+ EN Sbjct: 119 DNDKIKQRAWDFSSFGAKDMSFISVQHNRGLSLLLEMMFELLDLAKEQNLNAILKSQFEN 178 Query: 178 N-KRNEESPKENI-TSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQS 235 + + N+ES +E + T + K K+ + + + ++GR NVGKS+L+N LLG R + + Sbjct: 179 DTESNDESLEEFLDTLDSKEQDKDSEECIAVGIIGRVNVGKSSLLNALLGKERSVVSEVA 238 Query: 236 GITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDA 295 G T D V + + DTAG+R+ S+I +E+ + ++ +++ I++LDA Sbjct: 239 GTTIDPVDETGEILGQKVRFVDTAGIRRSSKIL-GIEKFALDRTNKALAQSHIAILVLDA 297 Query: 296 TIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINT 355 + PF + D +I + V++ LNKWD + +++ + + + + T Sbjct: 298 SEPFVELDEKISSLIPKHALGVIVVLNKWDK---RHKEFKEIMAEFKHRFGFLSFVPVMT 354 Query: 356 ISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQ 415 +S G ++ L +L++ + + RI TS LN ++K + P+ + ++ Y TQ Sbjct: 355 LSALNGRNIEKLKSEILKVYERFSYRIPTSVLNECVEKATQAHHIPSDHGKIVKIYYATQ 414 Query: 416 IQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 + PP + P + SYKRY+IN LR +F G+P+ + + N Sbjct: 415 YATHPPQIALVSNRPQSLHFSYKRYIINVLREHFDFQGVPLLLSVRGKNN 464 >gi|222618017|gb|EEE54149.1| hypothetical protein OsJ_00948 [Oryza sativa Japonica Group] Length = 725 Score = 196 bits (499), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 144/528 (27%), Positives = 246/528 (46%), Gaps = 76/528 (14%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPG--ITRDRLYGQAIINGVIFNIVDTA 58 ++ T+ +VG PNVGKS LFNR ++++ A+V N PG +TRD G A + + F ++D+A Sbjct: 92 LLPTVILVGRPNVGKSALFNRFIRRREALVYNTPGDHVTRDIREGVAKLGDLRFRVLDSA 151 Query: 59 GIADGKNC-SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRK--KNIPII 115 G+ SI + D T + + +FLID + G+ P D + +LR+ I I Sbjct: 152 GLETAATSGSILARTADMTGNVLARSQFAIFLIDVRDGLQPLDLEVGQWLRRHASGIHTI 211 Query: 116 IVSNKMDT----RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHP 171 + NK ++ + E + L F + V ISAE LG +EL+ + +F+ Sbjct: 212 VAMNKSESLDEHGVLTAAAGEAHRLGFGDPVAISAETGLGMAELYETLRPLFEDY----- 266 Query: 172 LEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLT 231 + + NN N++ P +E ++ PL++A+VGRPNVGKSTL+N LL R+L Sbjct: 267 MFQLTNNGLNQDDPTSEAETEAHEGDES-KLPLQLAIVGRPNVGKSTLLNTLLQEQRVLV 325 Query: 232 GSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIV 291 G ++G+TRDS+ + + N + + DTAG + S + +V +S +++ + Sbjct: 326 GPEAGLTRDSIRTQFQFDNRTVYLVDTAGWMERSGKEKGPASLSVVQSRKNLMRAHIVAL 385 Query: 292 LLD------ATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQ---DLRTKAI 342 +LD + ++ I G +V+ +NK D++ + L D K I Sbjct: 386 VLDGEKIAKSKSSMNHPEVLIARQAIEEGRGLVVIVNKMDLLRENRPLFDKVIDAVPKEI 445 Query: 343 KN-LPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPP 401 + +PQ+ I + +S G G +M V++ + W R++TS LN WL+K L Sbjct: 446 QTVIPQVTGIPVVFMSALEGRGRIAVMRQVIDTYEKWCLRLSTSRLNRWLRKIDLSQGSS 505 Query: 402 TIFNRYNR---------------------------------------------------L 410 I R + Sbjct: 506 QIHPSQGRSTCRVECWIHSESAGKERRKRRRACARKKKRHQGGAVMSRHSWKDSATQPKV 565 Query: 411 KYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 KY TQ+++ PP+F+ F + ++ ++ R+L L+ +F + GIPIR+ Sbjct: 566 KYFTQVKARPPTFVAFMSGKVQLSDTDIRFLTKSLKEDFDIGGIPIRV 613 >gi|254480079|ref|ZP_05093327.1| putative GTPase [marine gamma proteobacterium HTCC2148] gi|214039641|gb|EEB80300.1| putative GTPase [marine gamma proteobacterium HTCC2148] Length = 417 Score = 196 bits (499), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 122/426 (28%), Positives = 204/426 (47%), Gaps = 46/426 (10%) Query: 54 IVDTAGIADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIP 113 ++DT GI+ G I +M DQ+ +AI EA +LFL+D++ G+ P D A+ LR++N Sbjct: 2 VIDTGGIS-GDEDGIDSEMADQSLVAIEEADAVLFLVDAREGLNPADQALAKHLRQRNKS 60 Query: 114 IIIVSNKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF--------KQ 165 +V NK+D A + Y+L + + I+A H G + + F + Sbjct: 61 FHLVVNKIDGLDADIASSDFYALGVESMFAIAASHGRGVRNMIGEVMANFPEEERTEEDE 120 Query: 166 KYPNHPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLG 225 YPN R+AVVGRPNVGKSTL+NRLLG Sbjct: 121 AYPN---------------------------------STRVAVVGRPNVGKSTLVNRLLG 147 Query: 226 YNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRT 285 +R++ + G TRDS+ I + + DTAG+R+ + +++E+ ++ K+++++ Sbjct: 148 EDRVVVFDEPGTTRDSIYIDYQRDEQEYTLIDTAGVRRRKNVKQTVEKFSIVKTLKAIDD 207 Query: 286 CETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVS-DKLNLLQDLRTKAIKN 344 I+++DA QD+ ++ G +VLA+NKWD + D+ + ++ + + Sbjct: 208 AHVVILVMDAHEGIVDQDMHLLGHCIEKGRGLVLAVNKWDGIEPDQRDWIKSELGRRLA- 266 Query: 345 LPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIF 404 D + IS G G+ L S+ + ++T+ L L+ + PP I Sbjct: 267 FADFADTHF--ISALHGTGVGHLYKSINAAFESATRELSTNALTRILEGAVFDHAPPMIN 324 Query: 405 NRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 R +++Y +PP +I K+P SY RYL R L G P+R+ F++S Sbjct: 325 GRRIKMRYAHAGGRNPPLIVIHGNQTGKVPTSYARYLEKIYRRELKLVGTPVRIEFRTSD 384 Query: 465 NPYIKK 470 NPY +K Sbjct: 385 NPYAEK 390 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 54/169 (31%), Positives = 88/169 (52%), Gaps = 9/169 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTL NRL+ + VV + PG TRD +Y + + ++DTAG+ K Sbjct: 128 VAVVGRPNVGKSTLVNRLLGEDRVVVFDEPGTTRDSIYIDYQRDEQEYTLIDTAGVRRRK 187 Query: 65 NC--SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 N ++ K +T AI++AH+++ ++D+ GI D + +K +++ NK D Sbjct: 188 NVKQTVEKFSIVKTLKAIDDAHVVILVMDAHEGIVDQDMHLLGHCIEKGRGLVLAVNKWD 247 Query: 123 T-RIAQRNFYE------IYSLDFKEIVEISAEHDLGTSELHSVIFKIFK 164 QR++ + + DF + ISA H G L+ I F+ Sbjct: 248 GIEPDQRDWIKSELGRRLAFADFADTHFISALHGTGVGHLYKSINAAFE 296 >gi|315926702|gb|EFV06081.1| small GTP-binding domain protein [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 460 Score = 196 bits (498), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 135/457 (29%), Positives = 236/457 (51%), Gaps = 18/457 (3%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 +I ++G PNVGKS+LFNR+ ++++A+ + G TRD Q I+ ++D+ G+ + Sbjct: 3 SIILIGKPNVGKSSLFNRMARQRIAITSDISGTTRDTNKTQIHIHSKKAMLIDSGGLDE- 61 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + + K + T E+ +IL+L+D K D L+K PI +V NK+D Sbjct: 62 -SDELFKNVKKNTLKVAKESDIILYLVDGKLAPDDEDRQFFYSLKKLGKPIALVINKVDN 120 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + +E + KEI +S H++G EL+ + K +++ +I + + N E Sbjct: 121 KKDEERAWEFANFGVKEIFNLSVTHNVGLDELYEWLEKFLHEEF------LIPDEEENLE 174 Query: 184 SPKENITSEGKSSVKNISK-PLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 E+ + K + + +R+ +VGR NVGKS+L+N L+ R + S +G T D V Sbjct: 175 DFLEHYEEGKEFQFKEVDQNHIRVGIVGRVNVGKSSLLNTLVKQERSVVSSIAGTTIDPV 234 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + S +K+ IE DTAG+RK +I + LE+ + ++ + + + +++LDA F + Sbjct: 235 NESIVYKDKVIEFVDTAGIRKRGKI-QGLERFALNRTEKILSHSQIALLVLDAHEGFNEL 293 Query: 303 DLRIVDSVFNTGHAVVLALNKWD---MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGR 359 D RI V V++ LNKWD M DK +++LR K L I ++ +SG+ Sbjct: 294 DERIAGLVAKHYLGVIIVLNKWDKSEMDFDKT--VKELRLDRFKFLAYAPVISVSALSGK 351 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 L D +L+I + + +I TS LN+ ++ +P P + + ++ Y Q + Sbjct: 352 RVHVLLD---KILQIFENFTQKIQTSKLNTLIENATRAHPLPHDYGKLVKIYYAVQYDLA 408 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 PP + P + SYKRYL N++R F+ G+P+ Sbjct: 409 PPKIALIMNRPKALHFSYKRYLQNQIRKEFNFEGVPL 445 >gi|154249913|ref|YP_001410738.1| GTP-binding protein EngA [Fervidobacterium nodosum Rt17-B1] gi|154153849|gb|ABS61081.1| small GTP-binding protein [Fervidobacterium nodosum Rt17-B1] Length = 444 Score = 196 bits (498), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 141/467 (30%), Positives = 240/467 (51%), Gaps = 43/467 (9%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 I T+ +VG NVGKSTLFN+LV K+ ++V + G TRD + + + F +VDT GI Sbjct: 11 IPTVILVGKSNVGKSTLFNKLVGKRKSIVADENGTTRDAVVDRVVWYDKTFQLVDTCGIF 70 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 +GKN I ++ + T +++EA L++F++D + G++ D+ I +RK +I+ +NK+ Sbjct: 71 EGKNDEIYEKSKEITIKSLSEADLVIFVVDGRKGLSSEDYTIADLIRKSGAEVILAANKV 130 Query: 122 DT-RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + +I Q+N + +SL E +SAE EL I K + LE+ + Sbjct: 131 ENEKIYQKNLPDFFSLGLGEPFPVSAEQSRNLDELIETII----NKLTSKGLELTASEY- 185 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 ENI +R+ +VG+PN GKS+L N ++ R L +G TRD Sbjct: 186 -----DENI--------------IRVTLVGKPNAGKSSLFNMIVKEERALVTPIAGTTRD 226 Query: 241 SVS--ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 + + N KN+ DTAG+RK SRI + +E+ + +++ S+ + ++++DAT Sbjct: 227 IIDEIVQINNKNYL--FVDTAGLRKKSRIEDFIERVSTMRTIDSIERSDVVVLVIDATEG 284 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 +QD RI G A V+ NKWD+V +++ + + L I + S Sbjct: 285 ITRQDQRIAGLAEKNGKATVIVFNKWDLVKHADKRVKEYLDQVNEKLYFIDYSPVVFTST 344 Query: 359 RTGEGLDDLMVSVLEINKLWKT---RITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQ 415 + G +L+ + INK +++ R+ TS +NS +Q+ ++ PP + +L Y Q Sbjct: 345 VSKVGYKELINA---INKSYESLHKRVPTSAINSAIQRMIIK-PPHGL-----KLYYGLQ 395 Query: 416 IQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFS-LSGIPIRMCFQ 461 + PP+FL F ++PES++ + +R N G PI + F+ Sbjct: 396 VDIRPPTFLFFVN-KTEVPESFQNAIRRTIRENIEPFVGAPIFLKFK 441 >gi|315637972|ref|ZP_07893157.1| ribosome-associated GTPase EngA [Campylobacter upsaliensis JV21] gi|315481820|gb|EFU72439.1| ribosome-associated GTPase EngA [Campylobacter upsaliensis JV21] Length = 459 Score = 196 bits (498), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 130/458 (28%), Positives = 238/458 (51%), Gaps = 13/458 (2%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 +I ++G PNVGKS+LFNR+ ++++A+ G TRD + ING ++D+ G+ + Sbjct: 3 SIILIGKPNVGKSSLFNRIARQRIAITSEISGTTRDTNKIKVNINGKEALLIDSGGLDE- 61 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + + K + + A A +IL+L+D K D L+K P+ ++ NK+D Sbjct: 62 -SNELFKNVKQNSLNAAKNADIILYLVDGKNLPDEEDRKFFYALKKLQKPMALIINKVDN 120 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + YE + KE+ +S H++G EL++ + +K+ + + + +++ E Sbjct: 121 KKDEERVYEFVNFGVKELFNLSVTHNVGLDELYAWL-----EKFLHTSILKNDEEEQSLE 175 Query: 184 SPKENITSEGKSSVKNISK-PLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 EN E + K I + ++I +VGR NVGKS+L+N L+ R + S +G T D V Sbjct: 176 EFLENFDEEKQIKFKEIDENHIKIGIVGRVNVGKSSLLNALVKEQRSVVSSIAGTTIDPV 235 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + S +K+ +E DTAG+RK +I + LE+ + ++ + + + +++LDA F + Sbjct: 236 NESVMYKDKLLEFIDTAGIRKRGKI-QGLERFALNRTEKMLENSQIALLVLDANEGFNEL 294 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLN-LLQDLRTKAIKNLPQIGDIYINTISGRTG 361 D RI + V++ LNKWD + + ++++LR K L I ++ +SG+ Sbjct: 295 DERIAGLISKHYLGVIIVLNKWDKTRYEFDKVVKELRLDRFKFLAHAPIISVSALSGKR- 353 Query: 362 EGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 + LM +LE+ + +I T+ LN + K +P P + + ++ Y Q +PP Sbjct: 354 --VHILMDKILEVFANFTQKIPTAKLNDLVNKATKAHPLPHDYGKLVKIYYAVQYDLAPP 411 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 + P + SYKRYL N++R F+ G+P+ + Sbjct: 412 KIALIMNRPKALHFSYKRYLQNQIRKEFNFEGVPLILA 449 >gi|308809447|ref|XP_003082033.1| GTP-binding protein-like (ISS) [Ostreococcus tauri] gi|116060500|emb|CAL55836.1| GTP-binding protein-like (ISS) [Ostreococcus tauri] Length = 500 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 134/483 (27%), Positives = 238/483 (49%), Gaps = 49/483 (10%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD-G 63 +A+VG PNVGKS LFNRL K A+V + PG+TRDR+Y ++ F +VDT G + Sbjct: 32 VAVVGRPNVGKSALFNRLTGTKRAIVYDEPGVTRDRMYTRSYWGESEFMMVDTGGFENLP 91 Query: 64 KNCSIAKQMNDQTELAINEAHL-------------ILFLIDSKAGITPYDHAITSFLRKK 110 +N A +++ + I A + ++F++D + G+T D I +LR+ Sbjct: 92 RNPEGAPKIDRVGGVEILPAMIEAQAAEAVKEAAVLVFVVDGQVGLTEADRDIYRWLRRS 151 Query: 111 --NIPIIIVSNKMD-TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKY 167 + P+ + NK + T + + + L + +SA GT +L + Sbjct: 152 HSDKPLHLAVNKCESTTKGEEQIIDFWQLGDVTPLAVSAISGTGTGDLLDNVCATL---- 207 Query: 168 PNHPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYN 227 P+ +G + P+ +A++GRPNVGKS+L+N L G Sbjct: 208 -----------------PQPPQVGDGDVPEEEEEVPVTLAIIGRPNVGKSSLLNGLAGEM 250 Query: 228 RLLTGSQSGITRDSVS--ISWNWKNHPIEIFDTAGMRKPSRI---TESLEQKTVKKSMQS 282 R + SG TRDS+ + + + DTAG+R+ +++ ++ E+ +V +++Q+ Sbjct: 251 RSIVSDFSGTTRDSIDTMVEDKYTGKKYTLIDTAGIRRRTQVKSGSDGAEKLSVGRALQA 310 Query: 283 VRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDK---LNLLQDLRT 339 ++ + +++DAT +QD + + G A+VL +NKWD+V +N D Sbjct: 311 MKRADVVCLVIDATQGPSQQDFVLAERATQEGCALVLCINKWDLVDKDTYTMNKYTDEMR 370 Query: 340 KAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNP 399 ++ +Y + ++G+ + + D + +N + R+TT+ LNS +Q+ L Sbjct: 371 LKLRVFEYAEIVYTSALTGQRIQNVLD-AADIASVNH--RKRLTTATLNSVVQEATLWKL 427 Query: 400 PPTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 PP+ +R ++ YITQ PP+F+ F P PE+Y+RY+ +LR N G PIR+ Sbjct: 428 PPSRNSRKGKIYYITQASIRPPTFVFFVNDPKLFPETYRRYMERQLRENIGFPGTPIRLL 487 Query: 460 FQS 462 ++ Sbjct: 488 WRG 490 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/71 (40%), Positives = 38/71 (53%), Gaps = 1/71 (1%) Query: 191 SEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKN 250 +EG + + P R+AVVGRPNVGKS L NRL G R + + G+TRD + W Sbjct: 18 AEGLEQGADAALP-RVAVVGRPNVGKSALFNRLTGTKRAIVYDEPGVTRDRMYTRSYWGE 76 Query: 251 HPIEIFDTAGM 261 + DT G Sbjct: 77 SEFMMVDTGGF 87 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/131 (27%), Positives = 65/131 (49%), Gaps = 17/131 (12%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRL--YGQAIINGVIFNIVDTAGI- 60 T+AI+G PNVGKS+L N L + ++V + G TRD + + G + ++DTAGI Sbjct: 228 TLAIIGRPNVGKSSLLNGLAGEMRSIVSDFSGTTRDSIDTMVEDKYTGKKYTLIDTAGIR 287 Query: 61 --------ADG-KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKN 111 +DG + S+ + + A+ A ++ +ID+ G + D + ++ Sbjct: 288 RRTQVKSGSDGAEKLSVGRALQ-----AMKRADVVCLVIDATQGPSQQDFVLAERATQEG 342 Query: 112 IPIIIVSNKMD 122 +++ NK D Sbjct: 343 CALVLCINKWD 353 >gi|34558325|ref|NP_908140.1| GTP-binding protein EngA [Wolinella succinogenes DSM 1740] gi|41016995|sp|Q7M7W8|DER_WOLSU RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|34484044|emb|CAE11040.1| PUTATIVE GTP-BINDING PROTEIN [Wolinella succinogenes] Length = 470 Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 137/461 (29%), Positives = 239/461 (51%), Gaps = 22/461 (4%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAI-INGVIFNIVDTAGIAD 62 TIAI+G PNVGKS+LFNRL K+++A+ + G TRD + Q I I G +VDT GI + Sbjct: 3 TIAIIGKPNVGKSSLFNRLAKERIAITSDVSGTTRD-IKKQVIEIEGNEVLLVDTGGI-E 60 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSNK 120 K + ++ + A EA ++L+++D K + P D I+ F L ++N + +V NK Sbjct: 61 LKETGLFGKVRELALRAAKEADVVLYMVDGK--MRPQDDDISLFRALHRENEHLFLVVNK 118 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D + +E ++++ IS H+ G L I + + P E++ + Sbjct: 119 IDNDKEKERGWEFAEFGAEKLLFISVSHNRGVGALQREIADVLGLEAPQ---EIVLSEDD 175 Query: 181 NEESPKENITSEGKSSVKNISKP--LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 E+ + ++ E + + P +R+ ++G+ NVGKS+L+N LLG R + +G T Sbjct: 176 EEDLEEYLVSLEEEEIEEIEEAPSEIRVGIIGKVNVGKSSLLNALLGSERSVVSDVAGTT 235 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 D V S + + DTAG+R+ +I E +E+ + ++ +++ + +++LD ++P Sbjct: 236 IDPVDESMEIEGQKVLFVDTAGIRRRGKI-EGIEKYALDRTQKALEKADIALLVLDCSLP 294 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQD---LRTKAIKNLPQIGDIYINT 355 F D +I V V++ LNKWD+ S + ++ R K +++ P + T Sbjct: 295 FADLDEKIGGLVDKFSLGVIVVLNKWDIRSREFKEVEKEVRHRFKYLEHAPLV------T 348 Query: 356 ISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQ 415 +S + G +D L +L++ + + RI TS LN + + ++P P+ + R+ Y TQ Sbjct: 349 VSAQNGRHIDMLKEKILKVYENFSRRIPTSILNKTIMEASARHPLPSDHGKIVRIYYATQ 408 Query: 416 IQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 PP + PN + SYKRY++N LR F G PI Sbjct: 409 YGVCPPQISLVMNRPNSLHFSYKRYVVNFLRDRFDFEGSPI 449 >gi|321311009|ref|YP_004193338.1| GTP binding protein EngA [Mycoplasma haemofelis str. Langford 1] gi|319802853|emb|CBY93499.1| GTP binding protein EngA [Mycoplasma haemofelis str. Langford 1] Length = 436 Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 139/459 (30%), Positives = 226/459 (49%), Gaps = 33/459 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + I+G PNVGKS LFNRLV ++ AVV + PG+TRDR+ + F + DT G Sbjct: 6 VVIIGKPNVGKSQLFNRLVGERHAVVFSEPGVTRDRITLECSWLHRSFLLTDTGGYT-LD 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIP-IIIVSNKMDT 123 N S +++N QTE+A+ EA LILFL +K GI D I L+K P +++V NK D Sbjct: 65 NYSFQQEINRQTEIALKEADLILFLTSAKDGIDADDFQIAKTLKKNRAPNVLVVVNKCDV 124 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + A + L F E + ISAEH + T L + I ++ Sbjct: 125 KGADVQSH--LKLGFGEGIVISAEHGINTGNLLTSIVSHLGEE----------------- 165 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 + + L+IA++GRPNVGKS+L+N LL R+L +G TRD++ Sbjct: 166 -----------EIFEEEGERLKIAIIGRPNVGKSSLVNSLLKRERVLVSEVAGTTRDAID 214 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRI-TESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + +++ + DT G+++ S++ + E+ +V ++ +++ T I +LD + + Sbjct: 215 LDFSFNGKRYTLIDTPGIKRHSQMRVDEKEKYSVLRAQKAIARANTLIFMLDISEDLSEL 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 D R+ +F ++ NKWD+V + L T K P + + +S + G+ Sbjct: 275 DERVGGLIFKANIPTLIVANKWDLVERTHSNRSYLETALRKRFPFLKWAPVIFVSAKYGD 334 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 L + + EI I LN +L K PT+ R ++ ++QI++ P+ Sbjct: 335 KLPLIFDKLQEIESERTRVIGDKNLNLFLYKITSLFSVPTVKGRKLKMYSVSQIKAHIPT 394 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 FLI C PN + SY R + N+LR F + PI + ++ Sbjct: 395 FLILCNDPNLLHFSYSRLVENQLRKAFQYAITPITVIYK 433 >gi|86151224|ref|ZP_01069439.1| GTPase family protein [Campylobacter jejuni subsp. jejuni 260.94] gi|86153811|ref|ZP_01072014.1| GTP-binding protein engA [Campylobacter jejuni subsp. jejuni HB93-13] gi|121612239|ref|YP_001000097.1| GTP-binding protein EngA [Campylobacter jejuni subsp. jejuni 81-176] gi|167005055|ref|ZP_02270813.1| GTP-binding protein EngA [Campylobacter jejuni subsp. jejuni 81-176] gi|315123946|ref|YP_004065950.1| GTPase family protein [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|166224324|sp|A1VYA6|DER_CAMJJ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|85841571|gb|EAQ58818.1| GTPase family protein [Campylobacter jejuni subsp. jejuni 260.94] gi|85842772|gb|EAQ59984.1| GTP-binding protein engA [Campylobacter jejuni subsp. jejuni HB93-13] gi|87250505|gb|EAQ73463.1| GTPase family protein [Campylobacter jejuni subsp. jejuni 81-176] gi|315017668|gb|ADT65761.1| GTPase family protein [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 460 Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 135/457 (29%), Positives = 235/457 (51%), Gaps = 18/457 (3%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 +I ++G PNVGKS+LFNR+ ++++A+ + G TRD Q I+ ++D+ G+ + Sbjct: 3 SIILIGKPNVGKSSLFNRMARQRIAITSDISGTTRDTNKTQIHIHSKKAMLIDSGGLDE- 61 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + + K + T E+ +IL+L+D K D L+K PI +V NK+D Sbjct: 62 -SDELFKNVKKNTLKVAKESDIILYLVDGKLAPDDEDRQFFYSLKKLGKPIALVVNKVDN 120 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + +E + KEI +S H++G EL+ + K +++ +I + + N E Sbjct: 121 KKDEERAWEFANFGVKEIFNLSVTHNVGLDELYEWLEKFLHEEF------LIPDEEENLE 174 Query: 184 SPKENITSEGKSSVKNISK-PLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 E+ + K + + +R+ +VGR NVGKS+L+N L+ R + S +G T D V Sbjct: 175 DFLEHYEEGKEFQFKEVDQNHIRVGIVGRVNVGKSSLLNALVKQERSVVSSIAGTTIDPV 234 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + S K+ IE DTAG+RK +I + LE+ + ++ + + + +++LDA F + Sbjct: 235 NESVVHKDKVIEFVDTAGIRKRGKI-QGLERFALNRTEKILSHSQIALLVLDAHEGFNEL 293 Query: 303 DLRIVDSVFNTGHAVVLALNKWD---MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGR 359 D RI V V++ LNKWD M DK +++LR K L I ++ +SG+ Sbjct: 294 DERIAGLVAKHYLGVIIVLNKWDKSEMDFDKT--VKELRLDRFKFLAYAPVISVSALSGK 351 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 L D +L+I + + +I TS LN+ ++ +P P + + ++ Y Q + Sbjct: 352 RVHVLLD---KILQIFENFTQKIQTSKLNTLIENATRAHPLPHDYGKLVKIYYAVQYDLA 408 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 PP + P + SYKRYL N++R F+ G+P+ Sbjct: 409 PPKIALIMNRPKALHFSYKRYLQNQIRKEFNFEGVPL 445 >gi|254423770|ref|ZP_05037488.1| GTPase, putative [Synechococcus sp. PCC 7335] gi|196191259|gb|EDX86223.1| GTPase, putative [Synechococcus sp. PCC 7335] Length = 449 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 125/454 (27%), Positives = 213/454 (46%), Gaps = 41/454 (9%) Query: 18 LFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNCSIAKQMNDQTE 77 L NR + ++V + PG+TRDR Y A F VDT G+ + + +Q Sbjct: 2 LVNRFAGGRQSIVFDQPGVTRDRTYQPAFWKDREFLAVDTGGLVFDDDTEFLPYIREQAM 61 Query: 78 LAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR----IAQRNFYEI 133 A++EA LF++D + G T D I S++R +NIP+++ NK ++ I F+E Sbjct: 62 TALSEAAAALFVVDGQIGPTEGDQEIASWMRSQNIPVVLAVNKCESPDEGIIQAAQFWE- 120 Query: 134 YSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEESPKENITSEG 193 L E +SA H GT EL + + P +E ++ Sbjct: 121 --LGLGEPYAVSAIHGSGTGELLDALVEHLP---PADQIETVDE---------------- 159 Query: 194 KSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPI 253 R+A+VGRPNVGKS+++N +G NR + SG TRD++ + + Sbjct: 160 ----------YRVAIVGRPNVGKSSILNAFVGENRSIVSPISGTTRDAIDMVVTRGDGDD 209 Query: 254 E----IFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDS 309 + + DTAG+RK + E + ++ ++++ + ++++DA +QD ++ Sbjct: 210 QKRYRLIDTAGIRKKKNVDFGPEYFGINRAFKAIKRADVVLLVIDALDGVTEQDQKLAGR 269 Query: 310 VFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMV 369 + G A V+ +NKWD + + + + K + +G +S TG+ L ++ Sbjct: 270 IEEEGRACVIVVNKWDAIDKDSHTIYEFDKKIEAKIHFLGWAKRLYVSALTGQRLPKILD 329 Query: 370 SVLEINKLWKTRITTSYLNSWLQKT-QLQNPPPTIFNRYNRLKYITQIQSSPPSFLIFCT 428 +V + R++TS +N L+ PP T R R+ Y TQ++S PPSF +F Sbjct: 330 AVDMAVSEHRRRVSTSVVNEVLEDAVSWHTPPTTRQGRQGRIYYGTQVRSQPPSFALFVN 389 Query: 429 FPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 P ESY+RY+ + R N G PIR+ ++ Sbjct: 390 DPKLFGESYRRYIEKQFRQNLGYDGTPIRLLWRG 423 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 44/144 (30%), Positives = 71/144 (49%), Gaps = 10/144 (6%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIING-----VIFNIVDT 57 Y +AIVG PNVGKS++ N V + ++V G TRD + + G + ++DT Sbjct: 160 YRVAIVGRPNVGKSSILNAFVGENRSIVSPISGTTRDAI-DMVVTRGDGDDQKRYRLIDT 218 Query: 58 AGIADGKNCSIAKQMN--DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPII 115 AGI KN + ++ AI A ++L +ID+ G+T D + + ++ + Sbjct: 219 AGIRKKKNVDFGPEYFGINRAFKAIKRADVVLLVIDALDGVTEQDQKLAGRIEEEGRACV 278 Query: 116 IVSNKMDTRIAQRNFYEIYSLDFK 139 IV NK D ++ + IY D K Sbjct: 279 IVVNKWDA--IDKDSHTIYEFDKK 300 >gi|154175320|ref|YP_001407734.1| GTP-binding protein EngA [Campylobacter curvus 525.92] gi|166224320|sp|A7GWZ2|DER_CAMC5 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|112803598|gb|EAU00942.1| putative GTPase [Campylobacter curvus 525.92] Length = 461 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 139/463 (30%), Positives = 243/463 (52%), Gaps = 26/463 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 I +VG PNVGKS+LFNRL ++++A+ G TRD + + G ++D+ G+ + Sbjct: 4 IILVGKPNVGKSSLFNRLARQRIAITSEISGTTRDTNKAKIEVEGKDCLLIDSGGLDE-- 61 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + K + +T + +I++++D K + D AI L K N+PI +V NK+D++ Sbjct: 62 SSELFKNVKFKTLAEAKNSDIIIYMVDGKMAPSDEDRAIFYELCKLNLPIALVINKIDSK 121 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE-E 183 ++ +E + KEI EIS H+ G EL I + ++I+ ++ + + Sbjct: 122 KDEQRAWEFINFGVKEIFEISVSHNTGIDELSQWIAGQLED-------DVIKTDESEDFD 174 Query: 184 SPKENITSEGK--SSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 EN EG+ SS + +R+ +VGR NVGKS+L+N L+ R + +G T D Sbjct: 175 DFLENFNDEGELESSENFEDRYIRVGIVGRVNVGKSSLLNALVKDARAVVSDIAGTTIDP 234 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 V+ + + E DTAG+RK +I E +E+ + ++ + + + +++LD++ P + Sbjct: 235 VNEIYEHEGRIFEFVDTAGIRKRGKI-EGIERYALNRTEKILENSDIALLVLDSSEPLTE 293 Query: 302 QDLRI--VDSVFNTGHAVVLALNKWDMVSDKLN-LLQDL--RTKAIKNLPQIGDIYINTI 356 D RI V + FN G +++ LNKWD + + L++++ R K + P I ++ Sbjct: 294 LDERIAGVANKFNLG--MIIVLNKWDKSEREFDELVKEIKDRFKFLSYAPII------SV 345 Query: 357 SGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQI 416 S + + L +LE+ K + +I TS LN +++ +P P + ++ Y Q Sbjct: 346 SALGKKRIHKLYPLILEVYKNFTQKIQTSKLNEVIEEATKAHPIPREKGKSVKIYYAAQF 405 Query: 417 QSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 +PP + P + SYKRYLIN+LR NF LSG+PI + Sbjct: 406 GFAPPKIALIMNRPKCLHFSYKRYLINKLRQNFELSGVPIVLA 448 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 34/126 (26%), Positives = 62/126 (49%), Gaps = 4/126 (3%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP 264 +I +VG+PNVGKS+L NRL +T SG TRD+ + + D+ G+ + Sbjct: 3 KIILVGKPNVGKSSLFNRLARQRIAITSEISGTTRDTNKAKIEVEGKDCLLIDSGGLDES 62 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 S + ++++ KT+ ++ S + I ++D + +D I + + L +NK Sbjct: 63 SELFKNVKFKTLAEAKNS----DIIIYMVDGKMAPSDEDRAIFYELCKLNLPIALVINKI 118 Query: 325 DMVSDK 330 D D+ Sbjct: 119 DSKKDE 124 >gi|295098886|emb|CBK87975.1| ribosome-associated GTPase EngA [Eubacterium cylindroides T2-87] Length = 329 Score = 194 bits (493), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 110/342 (32%), Positives = 181/342 (52%), Gaps = 30/342 (8%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AIVG PNVGKST+FNRL+ ++ ++V + PG+TRDR+YG F+I+DT GI Sbjct: 5 TVAIVGRPNVGKSTIFNRLIGERKSIVDDTPGVTRDRIYGTVEWLTQSFHIIDTGGIQI- 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 ++ ++++N Q ++AI EA +I+F+ +K G+ D AI L+K N P+++ NK D Sbjct: 64 EDQPFSEEINMQVDIAIEEADVIIFITSAKEGVMTDDMAIARKLQKSNKPVVLAVNKADN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + Q YE YSL + + IS H +G +L + ++ +K E Sbjct: 124 QELQMAVYEFYSLGLGDPMTISGAHGIGLGDLLDKVIELMPKK---------------EL 168 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 P E ITS V+GRPNVGKS+L+N +L +R++ + G TRD++ Sbjct: 169 KPYEGITS--------------FCVIGRPNVGKSSLVNAILKEDRVIVSNIEGTTRDAID 214 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + + I DTAG+RK +I E++E+ ++ ++M ++ + ++D + +QD Sbjct: 215 TPFKVDDKEYMIIDTAGIRKRGKIYENIEKYSILRAMNAIERSNVVLFVIDGELGIREQD 274 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNL 345 + G V++ NKWD V + + K NL Sbjct: 275 KHVAGLAHEAGKGVIIVYNKWDTVDKDEKTMNAIEKKFALNL 316 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 53/173 (30%), Positives = 83/173 (47%), Gaps = 20/173 (11%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VGRPNVGKST+ NRL+G + + G+TRD + + W I DT G++ Sbjct: 6 VAIVGRPNVGKSTIFNRLIGERKSIVDDTPGVTRDRIYGTVEWLTQSFHIIDTGGIQIED 65 Query: 266 R-ITESLEQKTVKKSMQ---SVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLAL 321 + +E + +MQ ++ + I + A D+ I + + VVLA+ Sbjct: 66 QPFSEEI-------NMQVDIAIEEADVIIFITSAKEGVMTDDMAIARKLQKSNKPVVLAV 118 Query: 322 NKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEI 374 NK D Q+L+ A+ +G TISG G GL DL+ V+E+ Sbjct: 119 NKADN--------QELQM-AVYEFYSLGLGDPMTISGAHGIGLGDLLDKVIEL 162 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 45/129 (34%), Positives = 68/129 (52%), Gaps = 12/129 (9%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 I + ++G PNVGKS+L N ++K+ +V N G TRD + ++ + I+DTAGI Sbjct: 174 ITSFCVIGRPNVGKSSLVNAILKEDRVIVSNIEGTTRDAIDTPFKVDDKEYMIIDTAGIR 233 Query: 62 D-GK------NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPI 114 GK SI + MN AI ++++LF+ID + GI D + + + Sbjct: 234 KRGKIYENIEKYSILRAMN-----AIERSNVVLFVIDGELGIREQDKHVAGLAHEAGKGV 288 Query: 115 IIVSNKMDT 123 IIV NK DT Sbjct: 289 IIVYNKWDT 297 >gi|205355964|ref|ZP_03222732.1| putative GTP binding protein [Campylobacter jejuni subsp. jejuni CG8421] gi|205346088|gb|EDZ32723.1| putative GTP binding protein [Campylobacter jejuni subsp. jejuni CG8421] Length = 460 Score = 194 bits (493), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 135/457 (29%), Positives = 234/457 (51%), Gaps = 18/457 (3%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 +I ++G PNVGKS+LFNR+ ++++A+ + G TRD + IN ++D+ G+ + Sbjct: 3 SIILIGKPNVGKSSLFNRMARQRIAITSDISGTTRDTNKTEIHINSKKAMLIDSGGLDE- 61 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + + K + T E+ +IL+L+D K D L+K PI +V NK+D Sbjct: 62 -SDELFKNVKKNTLKVAKESDIILYLVDGKLAPDDEDRQFFYSLKKLGKPIALVINKVDN 120 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + +E + KEI +S H++G EL+ + K +++ +I + + N E Sbjct: 121 KKDEERAWEFANFGVKEIFNLSVTHNVGLDELYEWLEKFLHEEF------LISDEEENLE 174 Query: 184 SPKENITSEGKSSVKNISK-PLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 E + K + + +R+ +VGR NVGKS+L+N L+ R + S +G T D V Sbjct: 175 DFLEYYEEGKEFQFKEVDQNHIRVGIVGRVNVGKSSLLNALVKQERSVVSSIAGTTIDPV 234 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + S K+ IE DTAG+RK +I + LE+ + ++ + + + +++LDA F + Sbjct: 235 NESVVHKDKVIEFVDTAGIRKRGKI-QGLERFALNRTEKILSHSQIALLVLDAHEGFNEL 293 Query: 303 DLRIVDSVFNTGHAVVLALNKWD---MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGR 359 D RI V V++ LNKWD M DK +++LR K L I ++ +SG+ Sbjct: 294 DERIAGLVAKHYLGVIIVLNKWDKSEMDFDKT--VKELRLDRFKFLAYAPVISVSALSGK 351 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 L D +L+I + + +I TS LN+ ++ +P P + + ++ Y Q + Sbjct: 352 RVHVLLD---KILQIFENFTQKIQTSKLNTLIENATRAHPLPHDYGKLVKIYYAVQYDLA 408 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 PP + P + SYKRYL N++R F+ G+P+ Sbjct: 409 PPKIALIMNRPKALHFSYKRYLQNQIRKEFNFEGVPL 445 >gi|157165129|ref|YP_001466229.1| GTP-binding protein EngA [Campylobacter concisus 13826] gi|166224319|sp|A7ZBS1|DER_CAMC1 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|112801522|gb|EAT98866.1| GTP-binding protein EngA [Campylobacter concisus 13826] Length = 462 Score = 194 bits (493), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 136/459 (29%), Positives = 241/459 (52%), Gaps = 23/459 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + +VG PNVGKS+LFNRL ++++A+ + G TRD + + G ++D+ G+ D Sbjct: 4 VILVGKPNVGKSSLFNRLARRRIAITSDVSGTTRDTNKAKIEVEGKECILIDSGGLDD-- 61 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + K + +T + +IL+++D K D AI L K N+PI +V NK+D++ Sbjct: 62 SSELFKNVKAKTLAEAKNSDVILYMVDGKMMPDDEDRAIFYELSKLNLPIALVINKIDSK 121 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 ++ +E + K IS H+ G EL I+ K+ +++ + + + Sbjct: 122 KDEQREWEFVNFGSKNSFGISVSHNTGVDELS-----IWLAKHLEEKVQIKADTSDDFDD 176 Query: 185 PKENITSEGKSS--VKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 EN EG+ S + SK +R+ ++GR NVGKS+L+N L+ +R + +G T D V Sbjct: 177 FLENYNDEGELSDEIDYESKNIRVGIIGRVNVGKSSLLNALVKESRAVVSDVAGTTIDPV 236 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + + E DTAG+RK +I E +E+ + ++ + + + +++LD++ P + Sbjct: 237 NEIYEHDGRVFEFVDTAGIRKRGKI-EGIERYALNRTEKILEETDVALLVLDSSEPLTEL 295 Query: 303 DLRI--VDSVFNTGHAVVLALNKWDMVSDKLN-LLQDL--RTKAIKNLPQIGDIYINTIS 357 D RI + S F G V++ LNKWD S++ + L +++ R K + P I ++S Sbjct: 296 DERIAGIASKFELG--VIIVLNKWDKSSEEFDELCKEIKDRFKFLSYAPII------SVS 347 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 G+ + + ++EI K + +I TS LN + + +P P R ++ Y Q + Sbjct: 348 ALGGKRVHKIYPLIVEIYKNYTQKIQTSKLNEVIGEATKAHPLPRDKGRVVKIYYAVQFK 407 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 ++P + P + SYKRYL N+LR +FSL+G+PI Sbjct: 408 TAPIMIALIMNRPKCLHFSYKRYLTNKLRESFSLTGVPI 446 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 32/126 (25%), Positives = 62/126 (49%), Gaps = 4/126 (3%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP 264 ++ +VG+PNVGKS+L NRL +T SG TRD+ + + D+ G+ Sbjct: 3 KVILVGKPNVGKSSLFNRLARRRIAITSDVSGTTRDTNKAKIEVEGKECILIDSGGLDDS 62 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 S + ++++ KT+ ++ S + + ++D + + +D I + + L +NK Sbjct: 63 SELFKNVKAKTLAEAKNS----DVILYMVDGKMMPDDEDRAIFYELSKLNLPIALVINKI 118 Query: 325 DMVSDK 330 D D+ Sbjct: 119 DSKKDE 124 >gi|283955141|ref|ZP_06372643.1| GTPase family protein [Campylobacter jejuni subsp. jejuni 414] gi|283793354|gb|EFC32121.1| GTPase family protein [Campylobacter jejuni subsp. jejuni 414] Length = 460 Score = 194 bits (492), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 133/460 (28%), Positives = 237/460 (51%), Gaps = 18/460 (3%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 +I ++G PNVGKS+LFNR+ ++++A+ + G TRD + I+ ++D+ G+ + Sbjct: 3 SIILIGKPNVGKSSLFNRMARQRIAITSDISGTTRDTNKTEIFIHSKKAILIDSGGLDE- 61 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + + K + T + E+ +IL+L+D K D L+K PI +V NK+D Sbjct: 62 -SDELFKNVKKNTLKVVKESDIILYLVDGKLAPDDEDRQFFYSLKKLGKPIALVINKVDN 120 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + +E + KEI +S H++G EL+ + K +++ +I + + N E Sbjct: 121 KKDEERAWEFANFGVKEIFNLSVTHNVGLDELYDWLEKFLHEEF------LIPDEEENLE 174 Query: 184 SPKENITSEGKSSVKNISK-PLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 E+ + K + + +R+ +VGR NVGKS+L+N L+ R + S +G T D V Sbjct: 175 DFLEHYEEGKEFQFKEVDQNHIRVGIVGRVNVGKSSLLNALVKQERSVVSSIAGTTIDPV 234 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + S K+ IE DTAG+RK +I + LE+ + ++ + + + +++LDA F + Sbjct: 235 NESIVHKDKVIEFVDTAGIRKRGKI-QGLERFALNRTEKILSHSQIALLVLDAHEGFNEL 293 Query: 303 DLRIVDSVFNTGHAVVLALNKWD---MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGR 359 D RI V V++ LNKWD M DK +++LR K L I ++ ++G+ Sbjct: 294 DERIAGLVAKHYLGVIIVLNKWDKSKMDFDKT--VKELRLDRFKFLAYAPVISVSALNGK 351 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 L D +L+I + + +I TS LN+ ++ +P P + + ++ Y Q + Sbjct: 352 RVHVLLD---KILQIFENFTQKIQTSKLNTLIENATKAHPLPHDYGKLVKIYYAAQYDLA 408 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 PP + P + SYKRYL N++R F+ G+P+ + Sbjct: 409 PPKIALIMNRPKALHFSYKRYLQNQIRKEFNFEGVPLVIA 448 >gi|57237441|ref|YP_178454.1| GTP-binding protein EngA [Campylobacter jejuni RM1221] gi|86149131|ref|ZP_01067363.1| GTPase family protein [Campylobacter jejuni subsp. jejuni CF93-6] gi|88597436|ref|ZP_01100671.1| GTPase family protein [Campylobacter jejuni subsp. jejuni 84-25] gi|218562044|ref|YP_002343823.1| GTP-binding protein EngA [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|26006744|sp|Q9PIB6|DER_CAMJE RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|81819560|sp|Q5HW81|DER_CAMJR RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|57166245|gb|AAW35024.1| GTPase family protein [Campylobacter jejuni RM1221] gi|85840489|gb|EAQ57746.1| GTPase family protein [Campylobacter jejuni subsp. jejuni CF93-6] gi|88190497|gb|EAQ94471.1| GTPase family protein [Campylobacter jejuni subsp. jejuni 84-25] gi|112359750|emb|CAL34536.1| putative GTP-binding protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|284925657|gb|ADC28009.1| GTP-binding protein EngA [Campylobacter jejuni subsp. jejuni IA3902] gi|315057809|gb|ADT72138.1| GTP-binding protein EngA [Campylobacter jejuni subsp. jejuni S3] Length = 460 Score = 193 bits (491), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 135/457 (29%), Positives = 234/457 (51%), Gaps = 18/457 (3%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 +I ++G PNVGKS+LFNR+ ++++A+ + G TRD Q I+ ++D+ G+ + Sbjct: 3 SIILIGKPNVGKSSLFNRMARQRIAITSDISGTTRDTNKTQIHIHSKKAMLIDSGGLDE- 61 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + + K + T E+ +IL+L+D K D L+K PI +V NK+D Sbjct: 62 -SDELFKNVKKNTLKVAKESDIILYLVDGKLAPDDEDRQFFYSLKKLGKPIALVINKVDN 120 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + +E + KEI +S H++G EL+ + K +++ +I + + N E Sbjct: 121 KKDEERAWEFANFGVKEIFNLSVTHNVGLDELYEWLEKFLHEEF------LIPDEEENLE 174 Query: 184 SPKENITSEGKSSVKNISK-PLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 E + K + + +R+ +VGR NVGKS+L+N L+ R + S +G T D V Sbjct: 175 DFLEYYEEGKEFQFKEVDQNHIRVGIVGRVNVGKSSLLNALVKQERSVVSSIAGTTIDPV 234 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + S K+ IE DTAG+RK +I + LE+ + ++ + + + +++LDA F + Sbjct: 235 NESVVHKDKVIEFVDTAGIRKRGKI-QGLERFALNRTEKILSHSQIALLVLDAHEGFNEL 293 Query: 303 DLRIVDSVFNTGHAVVLALNKWD---MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGR 359 D RI V V++ LNKWD M DK +++LR K L I ++ +SG+ Sbjct: 294 DERIAGLVAKHYLGVIIVLNKWDKSEMDFDKT--VKELRLDRFKFLAYAPVISVSALSGK 351 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 L D +L+I + + +I TS LN+ ++ +P P + + ++ Y Q + Sbjct: 352 RVHVLLD---KILQIFENFTQKIQTSKLNTLIENATRAHPLPHDYGKLVKIYYAVQYDLA 408 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 PP + P + SYKRYL N++R F+ G+P+ Sbjct: 409 PPKIALIMNRPKALHFSYKRYLQNQIRKEFNFEGVPL 445 >gi|330837623|ref|YP_004412264.1| GTP-binding protein engA [Spirochaeta coccoides DSM 17374] gi|329749526|gb|AEC02882.1| GTP-binding protein engA [Spirochaeta coccoides DSM 17374] Length = 547 Score = 193 bits (491), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 129/463 (27%), Positives = 231/463 (49%), Gaps = 28/463 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PN GKSTLFNRLV K+ + PG+TRD + ++ G +VDT G+ + Sbjct: 24 IAIVGRPNTGKSTLFNRLVGKRRMITDPTPGVTRDPVSEHWMLGGHSVMLVDTGGVKLDR 83 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +++++ + AH+++ L++ +TP D + LR ++V NK+D Sbjct: 84 E-GLDHLVSEKSLSILERAHVLILLLECTT-LTPEDEMLVKHLRPYGDKTVLVVNKVDDY 141 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + +SL ++ +V ISA H LG +L + + M++ ++R + Sbjct: 142 NRETLVWNYHSLGYQRVVGISAAHGLGIGDLEDTL------------MGMLDLDERFDVL 189 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P+++ + +++AV+G+PN GKSTL N L+G + G TRD VS Sbjct: 190 PQKD-------------ERIKLAVLGKPNTGKSTLTNLLVGQEVSIVSDIPGTTRDVVSG 236 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + +K P I DTAG+R+ S++ E +E +V ++++++ ++++DA QD Sbjct: 237 DFLYKGTPFTILDTAGIRRKSKVDEDVEYYSVNRAIKTIDESNVVLLMIDAQEGIADQDK 296 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 +I + G VVL LNK D +S N L+ ++ + P + + +S + Sbjct: 297 KIAQLIVRRGKGVVLVLNKIDALSGIQNQLEAIKDRVRFLFPVLTFAPLVGVSALKATDV 356 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFL 424 L+ +V + + R+ T+ +N+ L++ PP + Y ++ Y TQ+ +P FL Sbjct: 357 HILLDTVYAVWRQLNKRVDTADVNNALKRWSEAYQPPRSSSGYFKVYYGTQVSVAPVRFL 416 Query: 425 IFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCF-QSSKNP 466 F PE Y ++L N +R + IPI + + +NP Sbjct: 417 FFVNKKPGFPEIYVQFLKNSIRRDLGFPSIPIEVELRERRRNP 459 >gi|237843971|ref|XP_002371283.1| GTP-binding protein EngA , putative [Toxoplasma gondii ME49] gi|211968947|gb|EEB04143.1| GTP-binding protein EngA , putative [Toxoplasma gondii ME49] gi|221483760|gb|EEE22072.1| hypothetical protein TGGT1_123310 [Toxoplasma gondii GT1] Length = 1146 Score = 193 bits (491), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 138/492 (28%), Positives = 233/492 (47%), Gaps = 24/492 (4%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKM----AVVGNHPGITRDRLYGQAIINGVIFNIVDT 57 + + ++G PNVGKS+LFN L K+ A+V + G TRDR Y ++ G F +VDT Sbjct: 649 VPCVCLLGRPNVGKSSLFNTLKDKEDTAADAIVRDEDGTTRDRHYAFSVWRGRPFIVVDT 708 Query: 58 AGI---ADGKNCSI-AKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIP 113 G+ D ++ A+++ Q + A+ EA +F++D + G+ D I FLR+ P Sbjct: 709 GGLIFEEDRYAAALYAEEIRTQVKCALEEATCAIFVVDGRHGLDGEDEVIAHFLRRSKTP 768 Query: 114 IIIVSNKMD-TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF--KQKYPNH 170 +++ NK + R + + + L + SA +G +L F F + P+ Sbjct: 769 VVVCVNKTENVRSGIASAQDFWKLGLGQPFPCSAVEGVGLPDLLDACFLHFPADSEAPSR 828 Query: 171 PLEMIENNKRNEESPKENITSEGKSSVKNIS---------KPLRIAVVGRPNVGKSTLIN 221 E K +E+ S G+S+ ++S + + +A+VGRPNVGKS L+N Sbjct: 829 GAGGKEKVKVDEKGEARAGLS-GRSTAVSLSSFALPTLAREDVNVAIVGRPNVGKSQLLN 887 Query: 222 RLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS--RITESLEQKTVKKS 279 RLLG +R L Q+G TRD+V + DTAG+R+ + + +E VK++ Sbjct: 888 RLLGVSRSLVSPQAGTTRDAVDELVQRDGRLYRLVDTAGIRRARVVKAQKGVEFVMVKRA 947 Query: 280 MQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRT 339 +++ C+ +++ DA KQD+ + + G A V+ +NKWD V + ++ T Sbjct: 948 ERALARCDVCLLVCDAERGLVKQDILLAKKIEEEGRAAVIVMNKWDTVDAEATAHHEVST 1007 Query: 340 KAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNP 399 + I +S TG+ + +V + + R+ T LN L+ +P Sbjct: 1008 YIRSVFYPLRWASIVCVSALTGKNASRIWAAVNDAFDQHRRRLGTGLLNFVLRDALAVHP 1067 Query: 400 PPTIFNRYNRLKYIT-QIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 PP R Y+ Q+ PP+ ++FC PE Y+ YL R F+ PI+ Sbjct: 1068 PPLFKGRKRGKIYVAQQVSIQPPTIVVFCNKTEYFPEVYRLYLDFSTRTAFNFHFTPIKW 1127 Query: 459 CFQSSKNPYIKK 470 F+ K ++K Sbjct: 1128 LFREKKRRKLEK 1139 >gi|283955809|ref|ZP_06373300.1| putative GTP-binding protein [Campylobacter jejuni subsp. jejuni 1336] gi|283792764|gb|EFC31542.1| putative GTP-binding protein [Campylobacter jejuni subsp. jejuni 1336] Length = 460 Score = 193 bits (491), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 134/457 (29%), Positives = 235/457 (51%), Gaps = 18/457 (3%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 +I ++G PNVGKS+LFNR+ ++++A+ + G TRD + I+ ++D+ G+ + Sbjct: 3 SIILIGKPNVGKSSLFNRMARQRIAITSDISGTTRDTNKTEIHIHSKKAMLIDSGGLDE- 61 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + + K + T E+ +IL+L+D K D L+K PI +V NK+D Sbjct: 62 -SDELFKNVKKNTLKVAKESDIILYLVDGKLAPDDEDRQFFYSLKKLGKPIALVINKVDN 120 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + +E + KEI +S H++G EL+ + K +++ +I + + N E Sbjct: 121 KKDEERAWEFANFGVKEIFNLSVTHNVGLDELYEWLGKFLHEEF------LIPDEEENLE 174 Query: 184 SPKENITSEGKSSVKNISK-PLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 E+ + K + + +R+ +VGR NVGKS+L+N L+ R + S +G T D V Sbjct: 175 DFLEHYEEGKEFQFKEVDQNHIRVGIVGRVNVGKSSLLNALVKQERSVVSSIAGTTIDPV 234 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + S K+ IE DTAG+RK +I + LE+ + ++ + + + +++LDA F + Sbjct: 235 NESVVHKDKVIEFVDTAGIRKRGKI-QGLERFALNRTEKILSHSQIALLVLDAHEGFNEL 293 Query: 303 DLRIVDSVFNTGHAVVLALNKWD---MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGR 359 D RI V V++ LNKWD M DK +++LR K L I ++ +SG+ Sbjct: 294 DERIAGLVAKHYLGVIIVLNKWDKSEMDFDKT--VKELRLDRFKFLAYAPVISVSALSGK 351 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 L D +L+I + + +I TS LN+ ++ +P P + + ++ Y Q + Sbjct: 352 RVHVLLD---KILQIFENFTQKIQTSKLNTLIENATRAHPLPHDYGKLVKIYYAVQYDLA 408 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 PP + P + SYKRYL N++R F+ G+P+ Sbjct: 409 PPKIALIMNRPKALHFSYKRYLQNQIRKEFNFEGVPL 445 >gi|218186089|gb|EEC68516.1| hypothetical protein OsI_36791 [Oryza sativa Indica Group] Length = 676 Score = 193 bits (491), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 151/518 (29%), Positives = 251/518 (48%), Gaps = 85/518 (16%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI---- 60 +AI+G PNVGKS LFNRLV A+V + PG+TRDRLYG++ F ++DT G+ Sbjct: 164 VAIIGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRLYGRSYWGDREFMVIDTGGVITLS 223 Query: 61 -----------------ADG-----KNCSIAK---QMNDQTELAINEAHLILFLIDSKA- 94 DG + +IA+ + Q A++EA +ILF++D +A Sbjct: 224 KSQAGVMEELAITTTVGMDGIPLASREAAIARMPSMIEKQAVAAVDEAAVILFIVDGQAV 283 Query: 95 -------------GITPYDHAITSFLRK--KNIPIIIVSNKMDT-RIAQRNFYEIYSLDF 138 G+ D I +LR+ + II+ NK ++ R Q + +SL F Sbjct: 284 SYLTEWVSKIFQDGLVAADIEIADWLRRNYSDKRIILAVNKCESPRKGQMQALDFWSLGF 343 Query: 139 KEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEESPKENITSEGKSSVK 198 + ISA GT EL L+M+ + N E + + +G Sbjct: 344 SPL-PISAITGTGTGEL----------------LDMVCSELSNFEE-LDGVEEDGNYIPA 385 Query: 199 NISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKN-HPIEIFD 257 IA+VGRPNVGKS+++N L+G +R + SG TRD++ + ++ ++ D Sbjct: 386 -------IAIVGRPNVGKSSILNALVGEDRTIVSPVSGTTRDAIDTEFTTEDGQKYKLID 438 Query: 258 TAGMRKPSRITES---LEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTG 314 TAG+R+ + + + E +VK++ +++R + ++++A +QD +I + + G Sbjct: 439 TAGIRRRAAVASAGSTTETLSVKRAFRAIRRSDVVALVVEAMACITEQDYKIAERIEKEG 498 Query: 315 HAVVLALNKWDMVSDKLN-----LLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMV 369 A V+ +NKWD + +K + QD+R K ++ L +Y S G +D ++ Sbjct: 499 KACVIVVNKWDTIPNKNHQSTTYYEQDVREK-LRILDWAPIVY---CSATHGSSVDKIIS 554 Query: 370 SVLEINKLWKTRITTSYLNSWLQKTQLQNPPP-TIFNRYNRLKYITQIQSSPPSFLIFCT 428 + + K R+ TS LN +++ PPP T + R+ Y TQ PP+F+ F Sbjct: 555 AAALVEKERSRRLGTSILNQVVREAIAFKPPPRTRGGKRGRVYYTTQAAIRPPTFVFFVN 614 Query: 429 FPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNP 466 PE+Y+RY+ +LR + G PIR+ ++S K P Sbjct: 615 DAKLFPETYRRYMEKKLRSDAGFPGTPIRLLWRSRKRP 652 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 54/182 (29%), Positives = 87/182 (47%), Gaps = 18/182 (9%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAII-NGVIFNIVDTAGI 60 I IAIVG PNVGKS++ N LV + +V G TRD + + +G + ++DTAGI Sbjct: 383 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPVSGTTRDAIDTEFTTEDGQKYKLIDTAGI 442 Query: 61 ADGKNCSIAKQMNDQTEL-----AINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPII 115 + A + + AI + ++ ++++ A IT D+ I + K+ + Sbjct: 443 RRRAAVASAGSTTETLSVKRAFRAIRRSDVVALVVEAMACITEQDYKIAERIEKEGKACV 502 Query: 116 IVSNKMDTRIAQRN-----FYE------IYSLDFKEIVEISAEHDLGTSELHSVIFKIFK 164 IV NK DT I +N +YE + LD+ IV SA H ++ S + K Sbjct: 503 IVVNKWDT-IPNKNHQSTTYYEQDVREKLRILDWAPIVYCSATHGSSVDKIISAAALVEK 561 Query: 165 QK 166 ++ Sbjct: 562 ER 563 Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 43/124 (34%), Positives = 62/124 (50%), Gaps = 13/124 (10%) Query: 186 KENITSEGKSSVKNISKPL--RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 K I + S+ K+I L R+A++GRPNVGKS L NRL+G NR + + G+TRD + Sbjct: 142 KRRIIRDKTSASKHIPDNLLPRVAIIGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRLY 201 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 W + + DT G+ IT S Q V + + TT V +D IP ++ Sbjct: 202 GRSYWGDREFMVIDTGGV-----ITLSKSQAGVMEEL-----AITTTVGMDG-IPLASRE 250 Query: 304 LRIV 307 I Sbjct: 251 AAIA 254 >gi|88608743|ref|YP_506419.1| putative GTP-binding protein EngA [Neorickettsia sennetsu str. Miyayama] gi|88600912|gb|ABD46380.1| putative GTP-binding protein EngA [Neorickettsia sennetsu str. Miyayama] Length = 473 Score = 193 bits (491), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 143/477 (29%), Positives = 251/477 (52%), Gaps = 52/477 (10%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQ-AIINGVIFNIVDTAGIA 61 + ++IVG NVGKSTLFN++ K+K ++ + G+TRD + + ++ +G ++DTAG Sbjct: 5 FRVSIVGKANVGKSTLFNKMAKEKRSITMDRKGVTRDVVVRRISLSDGKSLLLLDTAGFN 64 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKK--NIPIIIVSN 119 ++ ++TE AI E+ ++LF+ID+K I D ++LR+ N I++V N Sbjct: 65 PQHPETV-----ERTEYAIKESDMVLFVIDNK--IDSEDMLFANWLRRNAGNSKIVLVCN 117 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNK 179 K D + R+ ++ F+ + ISAEH LG EL S I ++ Sbjct: 118 KSDRK--DRDDCSLFG--FQNVFLISAEHSLGLRELISYIESFIPEQL------------ 161 Query: 180 RNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITR 239 ++PK SE + +K +A++G+PNVGKS+L+N+ +G +R+L +G TR Sbjct: 162 ---DTPKNG--SEEQRRIK-------VAILGQPNVGKSSLMNKFVGKDRVLVLPIAGTTR 209 Query: 240 DSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLD-ATIP 298 D +S WK E+ DTAG+RK R+T+ LE+ +++++ + I + D + Sbjct: 210 DPISDELQWKCTTFELVDTAGLRKKQRVTDGLEKICNSRALRTSAESDVVIFMCDISNFT 269 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSD-KLNLLQDLRTKAIKNL--PQIGDIYINT 355 E+QD +++ + G ++L NK D V +L ++D + + L QI +I+ Sbjct: 270 LERQDFLLMNRILEQGKPMILVGNKKDAVDAIELENIKDFISLQAQKLIASQIPIFFISC 329 Query: 356 ISGRTGEGLDDLMVSVLEINKLW---KTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKY 412 + EG D + E +L K I+T LN WLQ+ ++P P + ++ +LKY Sbjct: 330 LH----EG--DFSYILDECRRLHDDSKRNISTHRLNMWLQEIVRRHPHPMVNSKAVKLKY 383 Query: 413 ITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIK 469 I ++ + F++ P + ESY Y+ N L +F + GIP+ + + + NPY++ Sbjct: 384 IKKLLNK-FVFVLSANRPELVAESYLNYVRNSLIRDFRICGIPVTLTLKKNTNPYVE 439 >gi|296273309|ref|YP_003655940.1| ribosome-associated GTPase EngA [Arcobacter nitrofigilis DSM 7299] gi|296097483|gb|ADG93433.1| ribosome-associated GTPase EngA [Arcobacter nitrofigilis DSM 7299] Length = 480 Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 139/466 (29%), Positives = 229/466 (49%), Gaps = 23/466 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKS+LFNR+ K+++A+V + G TRD + I ++DT GI D Sbjct: 13 IALVGQPNVGKSSLFNRIAKQRIAIVSDQAGTTRDVRKHEVEIFDKKALMLDTGGI-DET 71 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N +I + + EA +ILF++D K D + L+ + +V NK+D Sbjct: 72 NDAIFSTVKRKAVETAKEADIILFMVDGKKLPDDKDKELFYELQALGKKLALVVNKIDND 131 Query: 125 IAQRNFYEIYSLDFKE--IVEISAEHDLGTSELHSVIFKIFKQKYPNHPL-EMIEN---- 177 + +E + K+ + IS H+ GT +L I+ + P P E+I N Sbjct: 132 KEKERLWEFFEFGIKDENLFGISVSHNRGTKDLFDWIYNVL----PELPESEVIINREIL 187 Query: 178 -NKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSG 236 + +E + E + + +++A++GR NVGKS+++N L+G R + +G Sbjct: 188 GDDDSEYAEGEYPLEDEIVEEEVDDNNIKVAIIGRVNVGKSSILNALIGQERSVVSPIAG 247 Query: 237 ITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDAT 296 T D V S+ +K+ I DTAG+R+ I E +E+ + ++ + + +V+LDA+ Sbjct: 248 TTIDPVDESFEYKDKNITFVDTAGLRRRGSI-EGIEKFALMRTKEMLEKANLALVVLDAS 306 Query: 297 IPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNL---PQIGDIYI 353 D +I V G ++ LNKWD D +Q+ K L P I Sbjct: 307 SELVDLDEKIAGLVDEYGLGTIIVLNKWDENMDTFQKIQETIRSKFKFLYYAPIIA---- 362 Query: 354 NTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYI 413 +S +TG +D L ++EI + + R++TS LN ++ +++ P+ Y R+ Y Sbjct: 363 --VSAKTGRSIDKLKDKLIEIYENYSQRVSTSELNRIIEHALIRHALPSPNGAYLRIYYT 420 Query: 414 TQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 TQ ++ PP + PN + SYKRYLIN LR + G PI + Sbjct: 421 TQFETKPPRIALIMNKPNLLHFSYKRYLINILREQLNFEGTPIHIL 466 Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 68/135 (50%), Gaps = 11/135 (8%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD-TAGMRK 263 +IA+VG+PNVGKS+L NR+ + Q+G TRD + H +EIFD A M Sbjct: 12 KIALVGQPNVGKSSLFNRIAKQRIAIVSDQAGTTRDV-------RKHEVEIFDKKALMLD 64 Query: 264 PSRITESLEQ--KTVK-KSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLA 320 I E+ + TVK K++++ + + + ++D + +D + + G + L Sbjct: 65 TGGIDETNDAIFSTVKRKAVETAKEADIILFMVDGKKLPDDKDKELFYELQALGKKLALV 124 Query: 321 LNKWDMVSDKLNLLQ 335 +NK D +K L + Sbjct: 125 VNKIDNDKEKERLWE 139 >gi|307108122|gb|EFN56363.1| hypothetical protein CHLNCDRAFT_144853 [Chlorella variabilis] Length = 581 Score = 193 bits (490), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 141/544 (25%), Positives = 250/544 (45%), Gaps = 93/544 (17%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPG--ITRDRLYGQAIINGVIFNIVDTA 58 ++ +AI+G PNVGKS LFNRLV+++ AVV + PG +TRD G A + + F ++DT+ Sbjct: 37 LLPVVAIIGRPNVGKSALFNRLVRRREAVVHDTPGGHVTRDYQEGVARLADLRFRVIDTS 96 Query: 59 GIADG-KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRK-------- 109 G+ SI + T + + + LFL+D G P D + +LRK Sbjct: 97 GLEPFLPGDSIQARATVLTATVLARSDIALFLVDGSTGTLPADEELARWLRKTVVGPGAT 156 Query: 110 ----KNIPIIIVSNKMDTRIAQRNFY------EIYSLDFKEIVEISAEHDLGTSELHSVI 159 ++ +++ +NK + R E L E V +SA G ++L++ + Sbjct: 157 GPAARSCAVLLAANKCERRGGGGAAAVAAAVAESMRLGLGEPVALSAMTGEGMTDLYAAL 216 Query: 160 FKIFK--QKYPNHPLEMIE----------------------------------------- 176 + + ++ IE Sbjct: 217 QPLLDPLTEARRAAVQQIEAPSGSGSTDIAGYSSSDGSDGISGMAAAAAPRGLGGQGAAV 276 Query: 177 -----NNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLT 231 + +E PK + S G SSV PLRIA++G PNVGKSTL N LLG R LT Sbjct: 277 QQQAGGGEWGKEDPKTS-NSGGGSSV-----PLRIAIMGLPNVGKSTLANWLLGSERCLT 330 Query: 232 GSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITE------SLEQKTVKKSMQSVRT 285 G + G+TRD++ W+ +E+ DTAG + +++ ++ Q+TV ++ ++ Sbjct: 331 GPEPGLTRDAIKERIEWEGQEVELVDTAGWIRRTKLANYDESGGAVAQQTVAEARGVMQF 390 Query: 286 CETTIVLLDATIPFE------KQDLRIVDSVFNTGHAVVLALNKWDMV--SDKLNLLQDL 337 +L+DA E +++ + V G +++ NK D + + + + ++ + Sbjct: 391 VHAVALLVDAARCLELGQGLTHREITLASDVVAEGRLLLIVANKLDTLTPAKRQHAMRLV 450 Query: 338 RTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQ 397 R NLP + + I +S TGEG+ L+ + + + W R+ TS+LN W + + Q Sbjct: 451 REAVEDNLPDVSGVPIIGMSAMTGEGVGMLLPAAAAMYRRWNQRVPTSHLNRW-KAAEYQ 509 Query: 398 NPPPTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIR 457 + NR+ YI+Q+++ PP+F+ + + + +R++ ++R F G+PIR Sbjct: 510 VGGGQVL---NRITYISQVKARPPTFVAWVSGSTALSAPSQRFVAAQIRKEFGFGGVPIR 566 Query: 458 MCFQ 461 + + Sbjct: 567 IAVR 570 >gi|27905016|ref|NP_778142.1| putative GTP-binding protein [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|46395803|sp|Q89A14|DER_BUCBP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|27904414|gb|AAO27247.1| putative GTP-binding protein [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 462 Score = 193 bits (490), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 147/479 (30%), Positives = 250/479 (52%), Gaps = 27/479 (5%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLV-KKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAG 59 M+ TIA++G NVGKSTLFN+L + A+ NH +TRDR +G I+N ++DT G Sbjct: 1 MVITIALIGRTNVGKSTLFNKLTGNRNDALASNHASLTRDRKHGFIIVNNTKIVLIDTPG 60 Query: 60 IADG--KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIV 117 I + K S+ K++ +Q + +I +A L+ ++ ++ + D I LRK I ++ Sbjct: 61 INEDSKKKISLDKEIFEQVKFSIKQADLVCLVVSARNKLMHKDVEIIEMLRKFQKKIFLL 120 Query: 118 SNKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 NK++ YE Y+L + + ISA + +G L + I F + + + Sbjct: 121 VNKIEGLNFDLVKYEFYTLGLRNMHFISATNGIGIDFLTNNICSFFTSQKN----SLYKK 176 Query: 178 NKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGI 237 NK + +IT++ K+ +N++K ++IA++G+PNVGKSTLIN LL R++ S G Sbjct: 177 NK--DFDIIYSITNDKKNCCQNLNKTIKIAIIGKPNVGKSTLINVLLNEKRVIVDSNPGT 234 Query: 238 TRDSVSISWNWK---NHPIE--IFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVL 292 TRDS NW + I FDTAG+RK ++I+ +E+ +V K+++ + +++ Sbjct: 235 TRDS-----NWSLIIRNKINYMFFDTAGIRKKNKISTYIEKISVHKTLKILNLVHVVLLV 289 Query: 293 LDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKL--NLLQDLRTKAIKNLPQIGD 350 +DA F QD +++ + G +V++ LNK D +S+K+ N+L K L I Sbjct: 290 IDAMDGFSDQDFYLLNLIIKNGCSVIIILNKNDKLSEKMRINVLNS------KMLKLISH 343 Query: 351 IYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRL 410 + + IS + G + + E +I TS + L+ ++ PP ++ Sbjct: 344 VKCHFISAKHNMGTSIIFKLINEAFFNSIKKIHTSKITEILKLAITKHQPPIYKRDRIKI 403 Query: 411 KYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIK 469 KY + +P + +I K+ YK+YL N + +L G I + F+SSKNP+IK Sbjct: 404 KYAHIGKHNPLTIIIHGNKLEKLSNVYKKYLTNFFQSKLNLVGSSIVLYFKSSKNPFIK 462 >gi|157414681|ref|YP_001481937.1| GTP-binding protein EngA [Campylobacter jejuni subsp. jejuni 81116] gi|172047057|sp|A8FKH3|DER_CAMJ8 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|157385645|gb|ABV51960.1| putative GTP-binding protein [Campylobacter jejuni subsp. jejuni 81116] gi|307747321|gb|ADN90591.1| GTP-binding protein engA [Campylobacter jejuni subsp. jejuni M1] gi|315932681|gb|EFV11611.1| small GTP-binding domain protein [Campylobacter jejuni subsp. jejuni 327] Length = 460 Score = 193 bits (490), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 134/458 (29%), Positives = 235/458 (51%), Gaps = 20/458 (4%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 +I ++G PNVGKS+LFNR+ ++++A+ + G TRD Q I+ ++D+ G+ + Sbjct: 3 SIILIGKPNVGKSSLFNRMARQRIAITSDISGTTRDTNKTQIHIHSKKAMLIDSGGLDE- 61 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + + K + T E+ +IL+L+D K D L+K PI +V NK+D Sbjct: 62 -SDELFKNVKKNTLKVAKESDIILYLVDGKLAPDDEDRQFFYSLKKLGKPIALVVNKVDN 120 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + +E + KEI +S H++G EL+ + K +++ +I + + N E Sbjct: 121 KKDEERAWEFANFGVKEIFNLSVTHNVGLDELYEWLEKFLHEEF------LIPDEEENLE 174 Query: 184 SPKENITSEGKSSVKNISK-PLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 E+ + K + + +R+ +VGR NVGKS+L+N L+ R + S +G T D V Sbjct: 175 DFLEHYEEGKEFQFKEVDQNHIRVGIVGRVNVGKSSLLNALVKQERSVVSSIAGTTIDPV 234 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + S K+ IE DTAG+RK +I + LE+ + ++ + + + +++LDA F + Sbjct: 235 NESVVHKDKVIEFVDTAGIRKRGKI-QGLERFALNRTEKILSHSQIALLVLDAHEGFNEL 293 Query: 303 DLRIVDSVFNTGHAVVLALNKWD---MVSDK-LNLLQDLRTKAIKNLPQIGDIYINTISG 358 D RI V V++ LNKWD M DK + L R K + P I ++S Sbjct: 294 DERIAGLVAKHYLGVIIVLNKWDKSEMDFDKTVKELHLDRFKFLAYAPVI------SVSA 347 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 +G+ + L+ +L+I + + +I TS LN+ ++ +P P + + ++ Y Q Sbjct: 348 LSGKRVHVLLDKILQIFENFTQKIQTSKLNTLIENATRSHPLPHDYGKLVKIYYAVQYDL 407 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 +PP + P + SYKRYL N++R F+ G+P+ Sbjct: 408 APPKIALIMNRPKALHFSYKRYLQNQIRKEFNFEGVPL 445 >gi|32267038|ref|NP_861070.1| GTP-binding protein EngA [Helicobacter hepaticus ATCC 51449] gi|41017015|sp|Q7VFY6|DER_HELHP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|32263090|gb|AAP78136.1| GTP-binding protein YphC [Helicobacter hepaticus ATCC 51449] Length = 487 Score = 192 bits (489), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 136/466 (29%), Positives = 238/466 (51%), Gaps = 20/466 (4%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAI+G PNVGKS+LFNRL+K+ +A+ + G TRD I+GV ++DT GI Sbjct: 3 TIAILGKPNVGKSSLFNRLIKQHLAITSDVSGTTRDVKRACFDISGVEVELLDTGGI--D 60 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSNKM 121 K + +++ + A EA L+L+++D + P D I F ++K P+++V NK+ Sbjct: 61 KAEGLFAKVSANSLKAGQEADLVLYMVD--GNVVPQDDDIAYFRTIQKAKKPLVLVINKV 118 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF---KQKYPNHPLEMIENN 178 D ++ ++ +++ IS H+ G S L IF++ K++ ++ L +N Sbjct: 119 DNDKIKQQAWDFACFGAEQMYFISVHHNRGLSILLEAIFELLSLAKEQSLSNNLRSQMDN 178 Query: 179 KRNEESPKENI---TSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQS 235 + +ES +E + S S +NI+ + ++GR NVGKS+L+N LLG R + + Sbjct: 179 EEIDESLEEFLGILESTPNKSEENIA----VGIIGRVNVGKSSLLNALLGKERSVVSEVA 234 Query: 236 GITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDA 295 G T D V + + + DTAG+R+ S+I +E+ + ++ ++ I++LDA Sbjct: 235 GTTIDPVDDEMDIEGKRVRFVDTAGIRRASKIW-GIEKFALLRTNAALAQSHIVILVLDA 293 Query: 296 TIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINT 355 + F + D +I + V++ LNKWD K +++ + P + + T Sbjct: 294 SESFVELDEKISSLIPKHALGVIVVLNKWD---KKHKEYKEIIKEFKHRFPFLSFAPVMT 350 Query: 356 ISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQ 415 +S G +D L +L++ + + RI TS LN + + + P+ + ++ Y TQ Sbjct: 351 LSALNGRNIDKLKKEILKVYQRFAYRIPTSALNDVIAQAVAHHHIPSDHGKIVKIYYATQ 410 Query: 416 IQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 + PP + P + SYKRY+IN LR F G+PI + + Sbjct: 411 YATHPPQIALVSNRPESLHFSYKRYIINMLREQFDFEGVPILLSVK 456 >gi|118474391|ref|YP_892485.1| GTP-binding protein EngA [Campylobacter fetus subsp. fetus 82-40] gi|166224321|sp|A0RQK2|DER_CAMFF RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|118413617|gb|ABK82037.1| GTP-binding protein EngA [Campylobacter fetus subsp. fetus 82-40] Length = 463 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 137/454 (30%), Positives = 232/454 (51%), Gaps = 13/454 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 I +VG PNVGKS+LFNRL K+++A+ + G TRD + I+ ++D+ G+ D Sbjct: 4 IILVGRPNVGKSSLFNRLAKQRIAITSDVSGTTRDTNKAEIFIDDKNCILIDSGGLDDSN 63 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 ++N E A +I+F++D K D L N PI +V NK+D++ Sbjct: 64 ELFKNVKINTLNE--AKNADIIVFMVDGKNFPDEIDKRFFYELSNLNKPIALVVNKVDSK 121 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + +E K I +S H+LGT EL I+K+ P ++ ++ +E Sbjct: 122 KDEERSWEFNEFGAKYIFNLSVSHNLGTDELRDWIYKLI----PKSKIKADTSDDFDEFL 177 Query: 185 PKENITSE-GKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 N E G SV +K ++I ++GR NVGKS+L+N L+ +R + +G T D V+ Sbjct: 178 DCVNEHGEMGLPSVDYETKNIKIGIIGRVNVGKSSLLNALVKEDRSVVSKIAGTTIDPVN 237 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 S+ +++ E DTAG+RK +I E +E+ + ++ + + + +++LDA+ P + D Sbjct: 238 ESYVYEDRVFEFVDTAGIRKRGKI-EGIERLALHRTEKILEEADIALLVLDASEPLTELD 296 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLN-LLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 RI +++ LNKWD + + ++ +LR K K L I ++ + G+ Sbjct: 297 ERIAGLGAKFELGLIIVLNKWDKDHGEFDKVVYELRDK-FKFLAYAPIISVSALGGKRVH 355 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPS 422 L L +LE+ K + ++ TS LN L++ +P P + ++ Y Q +PP Sbjct: 356 KLYPL---ILEVYKNYTQKMKTSRLNEVLEEAIRTHPIPRDHGKIVKIYYGVQFGFAPPK 412 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 + P + SYKRYL+N+LR N+ LSG P+ Sbjct: 413 IALIMNKPRSLHFSYKRYLLNKLRENYELSGTPV 446 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 32/126 (25%), Positives = 59/126 (46%), Gaps = 4/126 (3%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP 264 +I +VGRPNVGKS+L NRL +T SG TRD+ + + D+ G+ Sbjct: 3 KIILVGRPNVGKSSLFNRLAKQRIAITSDVSGTTRDTNKAEIFIDDKNCILIDSGGLDDS 62 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 + + ++++ T + + + + ++D ++ D R + N + L +NK Sbjct: 63 NELFKNVKINT----LNEAKNADIIVFMVDGKNFPDEIDKRFFYELSNLNKPIALVVNKV 118 Query: 325 DMVSDK 330 D D+ Sbjct: 119 DSKKDE 124 >gi|163782118|ref|ZP_02177117.1| GTP binding protein Era [Hydrogenivirga sp. 128-5-R1-1] gi|159882650|gb|EDP76155.1| GTP binding protein Era [Hydrogenivirga sp. 128-5-R1-1] Length = 431 Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 123/460 (26%), Positives = 228/460 (49%), Gaps = 37/460 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + I+G PNVGKS+LFNR+V ++ A+V + PG+TRD + +A G F +VDT G+ Sbjct: 5 VVIIGRPNVGKSSLFNRIVGRRKAIVEDIPGVTRDSVESKAEWGGKEFLLVDTGGLVPDS 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + I + + E + + +ILF++ K G+TP D I L +I+V NK+DT Sbjct: 65 HDEILEGVRKTIEREVERSDVILFVVSVKDGVTPLDEEIARLLYPFGDKVILVVNKVDTD 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + E Y L F+ + +S+ H G EL + K + +Y Sbjct: 125 RDEEVVSEFYQLGFRHVFPVSSVHGRGVGELLDEVVK--RLRY----------------- 165 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 SV+ + +R+ + GRPNVGKS+L+N LL +R++ +G TRD+V + Sbjct: 166 ----------GSVELSYEGIRLTLAGRPNVGKSSLLNALLKEDRVIVSPVAGTTRDTVEV 215 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + W + + DTAG+R+PS + +E +V +S++++ + + ++LDA +QD Sbjct: 216 PFEWNGNKFVLVDTAGVRRPSNVEYGVEFFSVGRSLKAIESSDVVCLVLDAGEGVTRQDK 275 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 R+ + V+ NK D+ +++L + + L ++ GR G+ Sbjct: 276 RLGGLIERKYKGCVVVANKMDLSPLSEEEVEELVRRELFFLDYAPIVFTVAPEGR---GV 332 Query: 365 DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLK--YITQIQSSPPS 422 +D++ + + + + + TS++N + + P I +R ++K Y Q PP+ Sbjct: 333 EDILDKAVLVYEDYTKKHKTSFVNKVVHDIVEERP---IHHRGRQVKVYYAFQEGVKPPT 389 Query: 423 FLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 ++ +P+ ++YK++ + RLR + PI++ + Sbjct: 390 VVVITNYPDAWKDNYKKFFVKRLREALGIKHSPIKLLIKG 429 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 49/184 (26%), Positives = 89/184 (48%), Gaps = 17/184 (9%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP 264 R+ ++GRPNVGKS+L NR++G + + G+TRDSV W + DT G+ P Sbjct: 4 RVVIIGRPNVGKSSLFNRIVGRRKAIVEDIPGVTRDSVESKAEWGGKEFLLVDTGGL-VP 62 Query: 265 SRITESLE--QKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALN 322 E LE +KT+++ ++ + + D P +++ R+ ++ G V+L +N Sbjct: 63 DSHDEILEGVRKTIEREVERSDVILFVVSVKDGVTPLDEEIARL---LYPFGDKVILVVN 119 Query: 323 KWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRI 382 K D D+ + + Q+G ++ +S G G+ +L+ V + +L + Sbjct: 120 KVDTDRDE---------EVVSEFYQLGFRHVFPVSSVHGRGVGELLDEV--VKRLRYGSV 168 Query: 383 TTSY 386 SY Sbjct: 169 ELSY 172 >gi|26553682|ref|NP_757616.1| GTP-binding protein EngA [Mycoplasma penetrans HF-2] gi|37999697|sp|Q8EWH6|DER_MYCPE RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|26453688|dbj|BAC44020.1| predicted ATP/GTP-binding protein [Mycoplasma penetrans HF-2] Length = 444 Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 138/466 (29%), Positives = 237/466 (50%), Gaps = 45/466 (9%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNR++K ++V + PGITRDR+Y A F ++DT G+ + Sbjct: 4 VAIVGKPNVGKSTLFNRIIKVNKSIVDDKPGITRDRIYANAEWLTQHFKLIDTGGLMLDE 63 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVS-NKMDT 123 KQ+ Q AI EA +I+FL+ K GI DH + L+K I+++ NK +T Sbjct: 64 -FDFKKQIELQVNYAITEADVIVFLVSYKEGINNDDHYVAKILKKHKNKKILLAVNKSET 122 Query: 124 RIAQR-NFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 R + +E F++ ISA H +G +L L+ I + K E Sbjct: 123 RNKDSYDDHEYLRFGFQKPYFISANHGIGIGDL----------------LDAIVDTKLKE 166 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 ++ + ++GRPNVGKS+L+N +L +R++T + + TRD++ Sbjct: 167 IKEED---------------TFKFCIIGRPNVGKSSLVNCILNEDRMITSNIANTTRDAI 211 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 ++ N I DTAG+R+ +I E++++ + QS+ +++LD + F +Q Sbjct: 212 DSNFKKDNLLYTIIDTAGIRRKGKIQENVDKYAYLRVEQSISRSNLIVIVLDGSEEFNEQ 271 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDK----LN-LLQDLRTKAIKNLPQIGDIYINTIS 357 D I ++ +NKWD+V +K +N ++ +R K K L ++++ I Sbjct: 272 DEVIAGLAHKANIPSIIVVNKWDIVKEKDEKTMNKFIKTIRIK-FKFLSWTPIVFLSAIE 330 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYN-RLKYITQI 416 + ++ L + I + + + L + K Q+ N PP +FNR ++ ++TQ+ Sbjct: 331 NKR---INTLFNEIKSIRENLNLKFNSKILTDLVFKLQMLNSPP-LFNRGRIKINHVTQV 386 Query: 417 QSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 P+F++FC P + SY RYL N +R + L+ +PI + F++ Sbjct: 387 DGQIPTFVLFCNNPEYLHFSYARYLENEIRKSLGLNNVPITLYFKN 432 Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 40/122 (32%), Positives = 63/122 (51%), Gaps = 2/122 (1%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI-A 61 + I+G PNVGKS+L N ++ + + N TRD + + +++ I+DTAGI Sbjct: 173 FKFCIIGRPNVGKSSLVNCILNEDRMITSNIANTTRDAIDSNFKKDNLLYTIIDTAGIRR 232 Query: 62 DGK-NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 GK ++ K + E +I+ ++LI+ ++D D I K NIP IIV NK Sbjct: 233 KGKIQENVDKYAYLRVEQSISRSNLIVIVLDGSEEFNEQDEVIAGLAHKANIPSIIVVNK 292 Query: 121 MD 122 D Sbjct: 293 WD 294 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 38/58 (65%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGM 261 L++A+VG+PNVGKSTL NR++ N+ + + GITRD + + W ++ DT G+ Sbjct: 2 LKVAIVGKPNVGKSTLFNRIIKVNKSIVDDKPGITRDRIYANAEWLTQHFKLIDTGGL 59 >gi|221504233|gb|EEE29908.1| GTPase mss1/trme, putative [Toxoplasma gondii VEG] Length = 1151 Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 138/496 (27%), Positives = 233/496 (46%), Gaps = 27/496 (5%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMA----VVGNHPGITRDRLYGQAIINGVIFNIVDT 57 + + ++G PNVGKS+LFN L K+ A +V + G TRDR Y ++ G F +VDT Sbjct: 649 VPCVCLLGRPNVGKSSLFNTLKDKEDAAADAIVRDEDGTTRDRHYAFSVWRGRPFIVVDT 708 Query: 58 AGI---ADGKNCSI-AKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIP 113 G+ D ++ A+++ Q + A+ EA +F++D + G+ D I FLR+ P Sbjct: 709 GGLIFEEDRYAAALYAEEIRTQVKCALEEATCAIFVVDGRHGLDGEDEVIAHFLRRSKTP 768 Query: 114 IIIVSNKMD-TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF--KQKYPNH 170 +++ NK + R + + + L + SA +G +L F F + P+ Sbjct: 769 VVVCVNKTENVRSGIASAQDFWKLGLGQPFPCSAVEGVGLPDLLDACFLHFPADSEAPSR 828 Query: 171 PLEMIENNKRNEESPKENITS----EGKSSVKNIS---------KPLRIAVVGRPNVGKS 217 E K +E+ S G+S+ ++S + + +A+VGRPNVGKS Sbjct: 829 GAGGKEKVKVDEKGDARAGLSGAGLSGRSTAVSLSSFALPTLAREDVNVAIVGRPNVGKS 888 Query: 218 TLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS--RITESLEQKT 275 L+NRLLG +R L Q+G TRD+V + DTAG+R+ + + +E Sbjct: 889 QLLNRLLGVSRSLVSPQAGTTRDAVDELVQRDGRLYRLVDTAGIRRARVVKAQKGVEFVM 948 Query: 276 VKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQ 335 VK++ +++ C+ +++ DA KQD+ + + G A V+ +NKWD V + Sbjct: 949 VKRAERALARCDVCLLVCDAERGLVKQDILLAKKIEEEGRAAVIVMNKWDTVDAEATAHH 1008 Query: 336 DLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQ 395 ++ T + I +S TG+ + +V + + R+ T LN L+ Sbjct: 1009 EVSTYIRSVFYPLRWASIVCVSALTGKNASRIWAAVNDAFDQHRRRLGTGLLNFVLRDAL 1068 Query: 396 LQNPPPTIFNRYNRLKYIT-QIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGI 454 +PPP R Y+ Q+ PP+ ++FC PE Y+ YL R F+ Sbjct: 1069 AVHPPPLFKGRKRGKIYVAQQVSIQPPTIVVFCNKTEYFPEVYRLYLDFSTRTAFNFHFT 1128 Query: 455 PIRMCFQSSKNPYIKK 470 PI+ F+ K ++K Sbjct: 1129 PIKWLFREKKRRKLEK 1144 >gi|153951852|ref|YP_001398571.1| GTP-binding protein EngA [Campylobacter jejuni subsp. doylei 269.97] gi|166224323|sp|A7H4Z1|DER_CAMJD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|152939298|gb|ABS44039.1| GTPase family protein [Campylobacter jejuni subsp. doylei 269.97] Length = 460 Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 133/457 (29%), Positives = 233/457 (50%), Gaps = 18/457 (3%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 +I ++G PNVGKS+LFN++ ++++A+ + G TRD + I+ ++D+ G+ + Sbjct: 3 SIILIGKPNVGKSSLFNKMARQRIAITSDISGTTRDANKTEIYIHSKKAMLIDSGGLDE- 61 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + + K + T E+ +IL+L+D K D L+K PI +V NK+D Sbjct: 62 -SDELFKNVKKNTLKVAKESDIILYLVDGKLAPDDEDRQFFYSLKKLGKPIALVINKVDN 120 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + +E + KEI +S H++G EL+ + K Q++ +I + + N E Sbjct: 121 KKDEERAWEFANFGVKEIFNLSVTHNVGLDELYEWLEKFLHQEF------LIPDEEENLE 174 Query: 184 SPKENITSEGKSSVKNISK-PLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 E + K + + +R+ +VGR NVGKS+L+N L+ R + S +G T D V Sbjct: 175 DFLEYYEEGKEFQFKEVDQNHIRVGIVGRVNVGKSSLLNALVKQERSVVSSIAGTTIDPV 234 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + S K+ IE DTAG+RK +I + LE+ + ++ + + + +++LD F + Sbjct: 235 NESIVHKDKVIEFVDTAGIRKRGKI-QGLERFALNRTEKILSHSQIALLVLDTHEGFNEL 293 Query: 303 DLRIVDSVFNTGHAVVLALNKWD---MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGR 359 D RI V V++ LNKWD M DK +++LR K L I ++ +SG+ Sbjct: 294 DERIAGLVVKHYLGVIIVLNKWDKSEMDFDKT--VKELRLDRFKFLAYAPVISVSALSGK 351 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 L D +L+I + + +I TS LN+ ++ +P P + + ++ Y Q + Sbjct: 352 RVHVLLD---KILQIFENFTQKIQTSKLNTLIENATRAHPLPHDYGKLVKIYYAVQYDLA 408 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 PP + P + SYKRYL N++R F+ G+P+ Sbjct: 409 PPKIALIMNRPKALHFSYKRYLQNQIRKEFNFEGVPL 445 >gi|57505514|ref|ZP_00371441.1| GTP-binding protein, Era/ThdF family [Campylobacter upsaliensis RM3195] gi|57016061|gb|EAL52848.1| GTP-binding protein, Era/ThdF family [Campylobacter upsaliensis RM3195] Length = 457 Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 130/461 (28%), Positives = 235/461 (50%), Gaps = 19/461 (4%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 +I ++G PNVGKS+LFNR+ ++++A+ G TRD + ING ++D+ G+ + Sbjct: 3 SIILIGKPNVGKSSLFNRIARQRIAITSEISGTTRDTNKIKVNINGKEALLIDSGGLDE- 61 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + + K + + A A +IL+L+D K D L+K P+ ++ NK+D Sbjct: 62 -SNELFKNVKQNSLNAAKNADIILYLVDGKNLPDEEDRKFFYTLKKLQKPMALIINKVDN 120 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + YE + KE+ +S H++G EL++ + N + N E+ Sbjct: 121 KKDEERVYEFVNFGVKELFNLSVTHNVGLDELYAWL--------ENFLHTSVLKNDEEEQ 172 Query: 184 SPKE---NITSEGKSSVKNISK-PLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITR 239 S +E N E + K I + ++I +VGR NVGKS+L+N L+ R + S +G T Sbjct: 173 SLEEFLENFDEEKEIKFKEIDENHIKIGIVGRVNVGKSSLLNALVKEQRSVVSSIAGTTI 232 Query: 240 DSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPF 299 D V+ S +K+ +E DTAG+RK +I + +E+ + ++ + ++ + +++LDA F Sbjct: 233 DPVNESVMYKDKVLEFIDTAGIRKRGKI-QGIERFALNRTEKMLQNSQIALLVLDANEGF 291 Query: 300 EKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLN-LLQDLRTKAIKNLPQIGDIYINTISG 358 + D RI + V++ LNKWD + + ++++LR K L I ++ +SG Sbjct: 292 NELDERIAGLISKHYLGVIIVLNKWDKTRYEFDKVVKELRLDRFKFLSHAPIISVSALSG 351 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 + + +M +LE+ + +I T+ LN + K +P P + + ++ Y Q Sbjct: 352 KR---VHIVMDKILEVFANFTQKIPTAKLNDLVNKATKAHPLPHDYGKLVKIYYAVQYDL 408 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 +PP + P + SYKRYL N++R F G+P+ + Sbjct: 409 APPKIALIMNRPKALHFSYKRYLQNQIRKEFDFEGVPLILA 449 >gi|189485147|ref|YP_001956088.1| GTP-binding protein EngA [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287106|dbj|BAG13627.1| GTP-binding protein EngA [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 441 Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 136/470 (28%), Positives = 229/470 (48%), Gaps = 33/470 (7%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +AIVG PNVGKS LFNRL+ +K A++ PG TRDR + F DTAG Sbjct: 3 MLTKVAIVGRPNVGKSALFNRLIGRKKAIIHETPGTTRDRNDHEVSWRDKNFIATDTAGW 62 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + + +K M+ Q ++A+ ++ ++LF++D K G P D I +R K I+V NK Sbjct: 63 S-TDISAFSKDMSRQLDIAVEKSDIVLFVVDGKTGAHPTDVQIAQQIRLKRKKTILVVNK 121 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +DT+ + YE Y L F +++ +SA H G S +H ++ KI+ Sbjct: 122 IDTQAEEIKGYEFYELGFDDVIFVSANH--GRS-VHDLLDKIW----------------- 161 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 ENI + K KN K L+I +VG+PNVGKS+ IN + R + G TRD Sbjct: 162 ------ENIKYDRKE--KNTWKTLKIILVGKPNVGKSSFINTVAKEERSIVHDTPGTTRD 213 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 S++ + DTAG+ + ++ + +E + + ++ + +++ DA+ Sbjct: 214 SLTARIQSDGKEYILTDTAGLHRGNKTKDGMEYLSNLSTGHAIEDADVAVLIADASQGIG 273 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 + +++I + V++ +NKWD++ +K + + + + + I IS +T Sbjct: 274 ETEVKIARLLLEKKKPVIVTVNKWDLIEEKEEAAKYFTGQLRERIKFMNWADIIFISAKT 333 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G+ L + + + + ++T LN + + L P T R ++K Q S P Sbjct: 334 GQRLGRIFQEAKLVFEQYSKQLTKEELNDVI-RDALAKKPYTNKGRTLKIKEYVQATSKP 392 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 P F+ + + SY+R+L N LR F G PI + F +N Y KK Sbjct: 393 PVFIFSVNDTDLVHFSYERFLENCLRAKFDFHGTPIVLKF---RNYYKKK 439 >gi|325972629|ref|YP_004248820.1| GTP-binding protein engA [Spirochaeta sp. Buddy] gi|324027867|gb|ADY14626.1| GTP-binding protein engA [Spirochaeta sp. Buddy] Length = 514 Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 128/472 (27%), Positives = 237/472 (50%), Gaps = 37/472 (7%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 I ++I+G PNVGKSTLFNRL+ K+ A+ PG+TRD + + ++ ++D+ G+ Sbjct: 19 IPVVSIIGRPNVGKSTLFNRLIGKRRAITDPTPGVTRDLIPERWLLGNHPVTLIDSGGVK 78 Query: 62 DGKNCSIAKQMND---QTELAINE-AHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIV 117 ++ M+D Q L++ E + I+F++D +T D + +LR I++V Sbjct: 79 VDRDS-----MDDLVAQKSLSLLELSDAIVFMMDCTE-VTAEDRELLEYLRPFTEKIVLV 132 Query: 118 SNKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 NK+D + +E Y ++ I+ ISA H LG EL + + Sbjct: 133 VNKVDDPKRENLLWEYYEYGYQRILGISAAHGLGIEELEDTLLGML-------------- 178 Query: 178 NKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGI 237 N+ S ++ + ++IA++G+PN GKSTL N L+G + + +G Sbjct: 179 ----------NLVSLEEAPEEEER--VKIAILGKPNTGKSTLTNLLVGKDISIVSDIAGT 226 Query: 238 TRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATI 297 TRD V S+N+K + DTAG+R+ S++ E +E +V ++++++ + ++++D+ Sbjct: 227 TRDVVMGSFNYKGSDFTVLDTAGIRRKSKVDEDVEYYSVNRAIKTIDEADVVLLMIDSVE 286 Query: 298 PFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTIS 357 QD +I + + G ++L LNK D+++ N L+ ++ + P + + +IS Sbjct: 287 GLADQDKKIANLIVRRGKGIILVLNKIDLLTGIGNELEAIKDRIRFLFPILSFAPLTSIS 346 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 G+ + L+ V + K R+ T+ LN +++ PP + ++ Y TQI Sbjct: 347 ALKGQDIGKLLDMVWTVWKQLNKRVETARLNEAIKEWGEAYQPPRGSTGHYKVYYGTQIS 406 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCF-QSSKNPYI 468 ++P FL F P+ Y +YL N +R + + IPI + + +NP + Sbjct: 407 ANPVKFLFFVNRIKDFPQIYIQYLKNCIRKDLGFTLIPIEVDLRERRRNPSL 458 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 42/141 (29%), Positives = 75/141 (53%), Gaps = 12/141 (8%) Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P EN+ ++ K V ++++GRPNVGKSTL NRL+G R +T G+TRD + Sbjct: 9 PSENVDTQVKIPV--------VSIIGRPNVGKSTLFNRLIGKRRAITDPTPGVTRDLIPE 60 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 W NHP+ + D+ G++ +S++ +KS+ + + + ++D T +D Sbjct: 61 RWLLGNHPVTLIDSGGVKVDR---DSMDDLVAQKSLSLLELSDAIVFMMDCT-EVTAEDR 116 Query: 305 RIVDSVFNTGHAVVLALNKWD 325 +++ + +VL +NK D Sbjct: 117 ELLEYLRPFTEKIVLVVNKVD 137 >gi|297801602|ref|XP_002868685.1| GTP-binding family protein [Arabidopsis lyrata subsp. lyrata] gi|297314521|gb|EFH44944.1| GTP-binding family protein [Arabidopsis lyrata subsp. lyrata] Length = 623 Score = 190 bits (483), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 140/484 (28%), Positives = 248/484 (51%), Gaps = 46/484 (9%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPG--ITRDRLYGQAIINGVIFNIVDTA 58 ++ T+ ++G PNVGKS L+NR + A+V N P +TRD G A + + FN++D+A Sbjct: 121 LLPTVMLMGRPNVGKSALYNR----REALVYNTPDDHVTRDIREGIAKLGDLRFNVLDSA 176 Query: 59 GI-ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKK--NIPII 115 GI + + +I + T + + +ID +AG+ P D + +LRK I I Sbjct: 177 GIETEVSSGTILGRTTAMTANVLARTQFAVLIIDVRAGLHPLDLEVGKWLRKHAPQIKPI 236 Query: 116 IVSNKMDT-----RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNH 170 +V NK ++ +A E +L F E + ISAE LG + L+ V+ + + ++ Sbjct: 237 VVMNKSESIGSLDEVAS----EALALGFGEPIAISAETGLGMTTLYEVLRPLLE----DY 288 Query: 171 PLEMIEN-NKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRL 229 +EM+ + +++ EN++ E + PL++A+VG+PNVGKSTL+N LL R+ Sbjct: 289 MVEMLNDICSQDDALSNENLSDE----IDESKLPLQLAIVGKPNVGKSTLLNALLEEERV 344 Query: 230 LTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETT 289 L G ++G+TRD+V + + ++ + + DTAG + + + ++ +S +S+ Sbjct: 345 LVGPEAGLTRDAVRVQFEFQGRTVYLVDTAGWLERTERDKGPASLSIMQSRKSLMRAHVI 404 Query: 290 IVLLDAT------IPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIK 343 ++LDA ++ I G +V+ +NK D + + N K IK Sbjct: 405 ALVLDAEEIIKAKCSMTHSEVVIARRAVEEGRGLVVIVNKMDRLRGREN---SEMYKKIK 461 Query: 344 N---------LPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKT 394 +PQI I + IS G G ++M V + K W +R++T LN WL+K Sbjct: 462 EAVPIEIQTVIPQITGIPVVFISALEGRGRMEVMKEVTDTYKRWCSRLSTGRLNRWLRKV 521 Query: 395 QLQNPPPTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGI 454 ++ ++ ++K+ TQ+++ PP+F+ F + ++ ES R+L L+ +F L G Sbjct: 522 MSRHSWKDTASQ-PKIKFFTQVKARPPTFVAFVSGKTQLLESDIRFLTRSLKEDFDLGGT 580 Query: 455 PIRM 458 PIR+ Sbjct: 581 PIRI 584 >gi|30693524|ref|NP_198812.2| GTP-binding family protein [Arabidopsis thaliana] Length = 616 Score = 189 bits (481), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 140/484 (28%), Positives = 247/484 (51%), Gaps = 47/484 (9%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPG--ITRDRLYGQAIINGVIFNIVDTA 58 ++ T+ ++G PNVGKS L+NR A+V N P +TRD G A + + FN++D+A Sbjct: 116 LLPTVMLMGRPNVGKSALYNR-----EALVYNTPDDHVTRDIREGIAKLGDLRFNVLDSA 170 Query: 59 GI-ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKK--NIPII 115 GI + + +I + T + + +ID +AG+ P D + +LRK I I Sbjct: 171 GIETEVSSGTILGRTTAMTANVLARTQFAVLIIDVRAGLHPLDLEVGKWLRKHAPQIKPI 230 Query: 116 IVSNKMDT-----RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNH 170 +V NK ++ +A E +L F E + ISAE LG + L+ V+ + + ++ Sbjct: 231 VVMNKSESIGSLDEVAS----EALALGFGEPIAISAETGLGMTTLYEVLRPLLE----DY 282 Query: 171 PLEMIEN-NKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRL 229 +EM+ + +++ EN++ E + PL++A+VG+PNVGKSTL+N LL R+ Sbjct: 283 TVEMLNDIGSQDDVLTDENLSDE----IDESKLPLQLAIVGKPNVGKSTLLNALLEEERV 338 Query: 230 LTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETT 289 L G ++G+TRD+V + + ++ + + DTAG + + + ++ +S +S+ Sbjct: 339 LVGPEAGLTRDAVRVQFEFQGRTVYLVDTAGWLERTERDKGPASLSIMQSRKSLMRAHVI 398 Query: 290 IVLLDAT------IPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIK 343 ++LDA ++ I G +V+ +NK D + + N K IK Sbjct: 399 ALVLDAEEIIKAKCSMTHSEVVIARRAVEEGRGLVVIVNKMDRLRGREN---SEMYKKIK 455 Query: 344 N---------LPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKT 394 +PQI I + IS G G ++M V + K W +R++T LN WL+K Sbjct: 456 EAVPIEIQTVIPQITGIPVVFISALEGRGRMEVMKEVTDTYKRWCSRLSTGRLNRWLRKV 515 Query: 395 QLQNPPPTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGI 454 ++ ++ ++K+ TQ+++ PP+F+ F + ++ ES R+L L+ +F L G Sbjct: 516 MSRHSWKDTASQ-PKIKFFTQVKARPPTFVAFVSGKTQLLESDIRFLTRSLKEDFDLGGT 574 Query: 455 PIRM 458 PIR+ Sbjct: 575 PIRI 578 >gi|57168525|ref|ZP_00367658.1| GTPase [Campylobacter coli RM2228] gi|305432942|ref|ZP_07402100.1| ribosome-associated GTPase EngA [Campylobacter coli JV20] gi|57020030|gb|EAL56707.1| GTPase [Campylobacter coli RM2228] gi|304444096|gb|EFM36751.1| ribosome-associated GTPase EngA [Campylobacter coli JV20] Length = 460 Score = 189 bits (480), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 125/458 (27%), Positives = 233/458 (50%), Gaps = 14/458 (3%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 +I ++G PNVGKS+LFNR+ ++++A+ G TRD + IN ++D+ G+ + Sbjct: 3 SIILIGKPNVGKSSLFNRMARQRIAITSEISGTTRDTNKTEVFINSKKALLIDSGGLDE- 61 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + + K + T ++ +IL+L+D K D L+K PI +V NK+D Sbjct: 62 -SNELFKNVKKNTLKIAKQSDIILYLVDGKLSPDDEDRQFFHSLKKLGKPIALVINKVDN 120 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + +E + KE+ +S H++G EL++ + +++ +I + + N E Sbjct: 121 KKDEERSWEFANFGVKEVFNLSVTHNIGLDELYNWLENFLDEQF------LIPDEEENLE 174 Query: 184 SPKENITSEGKSSVKNISKP-LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 E+ + K + + +R+ +VGR NVGKS+L+N L+ R + S +G T D V Sbjct: 175 DFLEHYEEGKEFQFKELDQNYIRVGIVGRVNVGKSSLLNALVKQERSVVSSIAGTTIDPV 234 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + S +K+ IE DTAG+RK +I + LE+ + ++ + + + +++LDA F + Sbjct: 235 NESIVYKDKVIEFVDTAGIRKRGKI-QGLERFALNRTEKILSNSQIALLVLDANEGFNEL 293 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLN-LLQDLRTKAIKNLPQIGDIYINTISGRTG 361 D RI V++ LNKWD + + ++++L+ K L + ++ +SG+ Sbjct: 294 DERIAGLAAKHYLGVIIVLNKWDKTEFEFDKVVKELKLDRFKFLAYAPVVSVSALSGKR- 352 Query: 362 EGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 + L+ +LE+ + +I TS LN + +P P + + ++ Y Q +PP Sbjct: 353 --VHVLLEKILEVFTNFTQKIPTSKLNDLIASATKAHPLPHDYGKLVKIYYAVQYDLAPP 410 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 + P + SYKRYL N++R F+ G+P+ + Sbjct: 411 KIALIMNRPKALHFSYKRYLQNQIRKEFNFEGVPLVIA 448 >gi|309782317|ref|ZP_07677044.1| ribosome-associated GTPase EngA [Ralstonia sp. 5_7_47FAA] gi|308918935|gb|EFP64605.1| ribosome-associated GTPase EngA [Ralstonia sp. 5_7_47FAA] Length = 376 Score = 189 bits (480), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 119/399 (29%), Positives = 196/399 (49%), Gaps = 31/399 (7%) Query: 72 MNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQRNFY 131 M QT A+ EA +++F++D + G+ P D I +LRK I++ NK + Sbjct: 1 MAKQTRQAVVEADVVIFIVDGRLGLAPQDRVIADYLRKTGRRILLAVNKAEGMRYTAVAS 60 Query: 132 EIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEESPKENITS 191 + Y L + ISA H G ++L + + + P E+ E ++ Sbjct: 61 DFYELGLGDPAAISAAHGDGVNDL---VAEALDLAFAERP-ELAEAADAHDHG------- 109 Query: 192 EGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNH 251 RIA+VGRPNVGKSTL+N L+G R++ G TRD++ + + Sbjct: 110 ------------TRIAIVGRPNVGKSTLVNALIGEERVIAFDMPGTTRDAIYVDFERNGK 157 Query: 252 PIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVF 311 P + DTAG+RK ++ E++E+ +V K++QS+ +++LDA QD I + Sbjct: 158 PYTLIDTAGLRKRGKVFEAIEKFSVVKTLQSIADANVVVLILDAQQDISDQDAHIAGFIV 217 Query: 312 NTGHAVVLALNKWDMVSD--KLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMV 369 +G A+V+ +NKWD ++ + + D+ K L + ++ IS + G+ LM Sbjct: 218 ESGRALVIGVNKWDGLTGHARDRIKHDMERK----LQFLSFANVHYISAKERTGIGALMK 273 Query: 370 SVLEINKLWKTRITTSYLNSWL-QKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFLIFCT 428 SV ++ T L L + + Q P +R +L+Y Q S+PP +I Sbjct: 274 SVDAAYAAAMVKLPTPKLTRVLMEAVEYQQPRRAGVSR-PKLRYAHQGGSNPPIVVIHGN 332 Query: 429 FPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 + IPE+Y+RYL R R F L G P+R+ F+++KNPY Sbjct: 333 ALSNIPETYRRYLEGRFREAFQLKGTPLRIEFRTNKNPY 371 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 50/160 (31%), Positives = 81/160 (50%), Gaps = 9/160 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N L+ ++ + + PG TRD +Y NG + ++DTAG+ Sbjct: 112 IAIVGRPNVGKSTLVNALIGEERVIAFDMPGTTRDAIYVDFERNGKPYTLIDTAGLRKRG 171 Query: 65 NC--SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 +I K +T +I +A++++ ++D++ I+ D I F+ + ++I NK D Sbjct: 172 KVFEAIEKFSVVKTLQSIADANVVVLILDAQQDISDQDAHIAGFIVESGRALVIGVNKWD 231 Query: 123 -------TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 RI ++ L F + ISA+ G L Sbjct: 232 GLTGHARDRIKHDMERKLQFLSFANVHYISAKERTGIGAL 271 >gi|254458756|ref|ZP_05072180.1| GTPase family protein [Campylobacterales bacterium GD 1] gi|207084522|gb|EDZ61810.1| GTPase family protein [Campylobacterales bacterium GD 1] Length = 496 Score = 189 bits (480), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 141/502 (28%), Positives = 243/502 (48%), Gaps = 55/502 (10%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAI+G PNVGKS+LFNRLVKK+ A+ + G TRD +I ++DT G+ G Sbjct: 4 IAIIGRPNVGKSSLFNRLVKKRDAITSDIAGTTRDVKRRNTVIINKEVELLDTGGLDKG- 62 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNI--PIIIVSNKMD 122 C + ++ + + A +A +IL+++D K+ P D F +N+ + +V NK+D Sbjct: 63 -CELFDKIKEMSLKAAYKADIILYMVDGKS--IPEDEDKKLFYELQNLGKEVALVVNKID 119 Query: 123 TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK-------IFKQKYPNHPLEMI 175 + N ++ Y I IS H+ T EL I I + + +++I Sbjct: 120 NDKMKENLWDYYEFGTDAIFGISVAHNRNTVELLDWIASKIPDSDIIKEDEEGEDEIQII 179 Query: 176 E---------NNKRNEESPKENITSEGKSSVKNISKP--------------------LRI 206 E N R + + T + + + ++I Sbjct: 180 EPELDDEDFFANARKHDEDDDGFTYWDDDEMDGVIQDDTIYGNNDRIKEFNEEDVNHIKI 239 Query: 207 AVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSR 266 A++GR NVGKS+L+N LLG R + S +G T D + + ++K + DTAG+R+ + Sbjct: 240 AIIGRTNVGKSSLLNALLGEERSVVSSVAGTTIDPIDETIDYKGKQLTFVDTAGLRRRGK 299 Query: 267 ITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 I +E+ + ++ + + +++LDA+ PF D +I V + A ++ LNKWD+ Sbjct: 300 IL-GIEKYALMRTTEMLDNSNMALIVLDASEPFLDLDEKIAGLVDSNRLASIIVLNKWDI 358 Query: 327 VS----DKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRI 382 DK+ R K + P I TIS ++ + +D L +LEIN+ + RI Sbjct: 359 SKREEHDKIIKEVRERFKFLAYAPII------TISAKSHQRVDKLHDMILEINENYSQRI 412 Query: 383 TTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLI 442 TS +N L++ ++ P++ + R+ Y TQ ++ PP I P+ + +Y+RYL Sbjct: 413 PTSKINEVLERALRRHTLPSVSGQVIRIYYATQYETRPPKIAIVMNKPSGLHFTYRRYLT 472 Query: 443 NRLRINFSLSGIPIRMCFQSSK 464 N++R F+ +G P + F++ K Sbjct: 473 NQMREAFNFTGTP--LLFKAKK 492 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 41/130 (31%), Positives = 71/130 (54%), Gaps = 6/130 (4%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP 264 +IA++GRPNVGKS+L NRL+ +T +G TRD + N +E+ DT G+ K Sbjct: 3 KIAIIGRPNVGKSSLFNRLVKKRDAITSDIAGTTRDVKRRNTVIINKEVELLDTGGLDKG 62 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNK 323 + + +++ ++K + + + + ++D +IP E +D ++ + N G V L +NK Sbjct: 63 CELFDKIKEMSLKAAYK----ADIILYMVDGKSIP-EDEDKKLFYELQNLGKEVALVVNK 117 Query: 324 WDMVSDKLNL 333 D K NL Sbjct: 118 IDNDKMKENL 127 >gi|256372122|ref|YP_003109946.1| small GTP-binding protein [Acidimicrobium ferrooxidans DSM 10331] gi|256008706|gb|ACU54273.1| small GTP-binding protein [Acidimicrobium ferrooxidans DSM 10331] Length = 429 Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 132/458 (28%), Positives = 223/458 (48%), Gaps = 43/458 (9%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + IVG PNVGKS+LFNR+V ++ AVV P +TRD G IVDT G G Sbjct: 4 VVIVGRPNVGKSSLFNRVVGRREAVVEERPKVTRDAKEATIDWEGAPLAIVDTGGYLAGA 63 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + ++ E A+ A L L ++D++ T D AI +R+ +P I+V+NK+D+ Sbjct: 64 D-GLDAAVSAAVEAALRRADLALVVVDARVPPTEEDAAIARVVRRAKVPSILVANKVDSP 122 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + +E +L E V +SA H G EL ++ + Sbjct: 123 GHEPAIWEHLALGVGEPVPVSAMHGRGVFELLDLVAR----------------------- 159 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 + ++T+ + + + +A+VGRPNVGKS+L NRL+G R + Q G T D++ Sbjct: 160 -RLDLTAAEEPEAAPAAD-VAVAIVGRPNVGKSSLFNRLVGEPRAIVYDQPGTTVDTLDT 217 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 I DTAG+R+ SR E ++ +++ ++ + +++++DAT D Sbjct: 218 VVETDEGRIRFVDTAGLRRRSRYESGTEYFSMVRTLAAIDAADVSLLVIDATEGVTGWDQ 277 Query: 305 RIVDSVFNTGHAVVLALNKWDMVS----DKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 R+V+ + G VV+ LNKWD + D++ + R + L + IS T Sbjct: 278 RLVERIDAAGSPVVVVLNKWDQLDAEAKDRIERDVEDRLAFVTGLDPV------RISALT 331 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 G G+ ++ ++ ++ R+ T LN +L + Q ++PPP R+ Y Q + P Sbjct: 332 GRGVHRVLPAIFAARADYERRVPTGQLNRFLNELQSEHPPPA-----GRILYAVQGATRP 386 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 P+F +F +P Y R+L +R+R F + PI++ Sbjct: 387 PTFTLFAN--RSLPPPYLRFLEHRIREAFEMDATPIKL 422 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 62/121 (51%), Gaps = 3/121 (2%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP 264 R+ +VGRPNVGKS+L NR++G + + +TRD+ + +W+ P+ I DT G Sbjct: 3 RVVIVGRPNVGKSSLFNRVVGRREAVVEERPKVTRDAKEATIDWEGAPLAIVDTGGYLAG 62 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 + + L+ ++R + +V++DA +P ++D I V +L NK Sbjct: 63 A---DGLDAAVSAAVEAALRRADLALVVVDARVPPTEEDAAIARVVRRAKVPSILVANKV 119 Query: 325 D 325 D Sbjct: 120 D 120 >gi|196229979|ref|ZP_03128843.1| small GTP-binding protein [Chthoniobacter flavus Ellin428] gi|196226305|gb|EDY20811.1| small GTP-binding protein [Chthoniobacter flavus Ellin428] Length = 462 Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 124/443 (27%), Positives = 210/443 (47%), Gaps = 42/443 (9%) Query: 34 PGITRDRLYGQAIINGVIFNIVDTAGIADGKNCSIAKQMNDQTELAINEAHLILFLIDSK 93 PG+TRDR+ Q + F I+DT GI + S +Q+ + E+A+ A ++LF++D + Sbjct: 2 PGVTRDRITSQCKLGNYPFEIIDTGGIGANVDASFTEQVRAEVEIALGSADVLLFVVDGQ 61 Query: 94 AGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTS 153 G+TP D + +R+ P+++ NK+D E L F E + ISAEH+ G Sbjct: 62 DGLTPLDQELARLMRRTAKPLLLAINKIDVDQHGPRAAEFSQLGFSESIAISAEHNRGIL 121 Query: 154 ELHSVIFKIFKQKYPNHPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPN 213 L + + ++ P + +E P + S P++IA+VGRPN Sbjct: 122 PLVAWLERML-------PAPIF-----DEAGPGSDPAS-----------PIKIAIVGRPN 158 Query: 214 VGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQ 273 VGKS+L N +L +R L SG TRD++ I + + DTAG+R ++ S+E Sbjct: 159 VGKSSLTNAILNDDRTLVSPISGTTRDAIDIPYERHGQHYVLIDTAGIRPRGKVDNSVEV 218 Query: 274 KTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNL 333 +V +S S+R + +++DA QD RI + ++A NKWD++ D+ + Sbjct: 219 FSVMRSETSIRRADICCLVIDAEQGVTAQDKRIAGMIQEENKPCIVAFNKWDLIKDRTDS 278 Query: 334 LQDLRT------KAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYL 387 ++L+ + + +P + +S +TG L L ++ I + RI T L Sbjct: 279 KEELKEVLDGLREELFFIPYAPSML---VSAKTGAELTRLFKTIERIRSESQFRIGTGVL 335 Query: 388 NSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP--------PSFLIFCTFPNKIPESYKR 439 N L + +PP RLK + Q P F++F + +SY R Sbjct: 336 NRLLAEAVALHPP--AMKSGKRLKVLFGTQPDRPHGKVIPIPEFVLFVNDDGLLDQSYHR 393 Query: 440 YLINRLRINFSLSGIPIRMCFQS 462 YL ++LR +G+PI + ++ Sbjct: 394 YLDSKLREKAPYTGLPILLHLRA 416 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/120 (35%), Positives = 66/120 (55%), Gaps = 2/120 (1%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI-ADG 63 IAIVG PNVGKS+L N ++ +V G TRD + +G + ++DTAGI G Sbjct: 151 IAIVGRPNVGKSSLTNAILNDDRTLVSPISGTTRDAIDIPYERHGQHYVLIDTAGIRPRG 210 Query: 64 K-NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 K + S+ ++E +I A + +ID++ G+T D I ++++N P I+ NK D Sbjct: 211 KVDNSVEVFSVMRSETSIRRADICCLVIDAEQGVTAQDKRIAGMIQEENKPCIVAFNKWD 270 >gi|299783191|gb|ADJ41189.1| GTP-binding protein engA [Lactobacillus fermentum CECT 5716] Length = 370 Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 101/327 (30%), Positives = 178/327 (54%), Gaps = 31/327 (9%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFNR+ +++A+V + PG+TRDRLY G F+++DT GI + Sbjct: 6 VAIVGRPNVGKSTLFNRIAGERIAIVEDTPGVTRDRLYAHGEWLGKNFSMIDTGGI-EMS 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + Q+ Q E+AI EA +I+ +++ + G+T D + L + N P+++ NK+D Sbjct: 65 DQPLLTQIRQQAEIAIEEADVIIMVVNVENGVTDADEQVAQILYRSNKPVVLAVNKVDNP 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + Y+ Y L E +S+ H +G ++ + + F +K EE Sbjct: 125 ERRLDVYDFYQLGLGEPYPVSSVHGVGLGDMLDAVIENFVEK------------DAEEED 172 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 + +R + +GRPNVGKS+L+N +LG NR++ +G TRD+++ Sbjct: 173 DR-----------------IRFSFIGRPNVGKSSLVNAILGENRVIVSDMAGTTRDAINT 215 Query: 245 SWNWKN-HPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + K+ + DTAG++K ++ E+ E+ + +SM+++ + +V+L+A + D Sbjct: 216 QFTAKDGREFTMVDTAGIKKKGKLYENTERYALMRSMRAIDDSDVVLVVLNAEEGIRELD 275 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDK 330 I G AV++ +NKWD + D+ Sbjct: 276 KHIAGYAHEAGRAVIIVVNKWDTIPDR 302 >gi|315637145|ref|ZP_07892368.1| ribosome-associated GTPase EngA [Arcobacter butzleri JV22] gi|315478681|gb|EFU69391.1| ribosome-associated GTPase EngA [Arcobacter butzleri JV22] Length = 485 Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 137/468 (29%), Positives = 226/468 (48%), Gaps = 19/468 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRD-RLYGQAIINGVIFNIVDTAGIADG 63 IA++G PNVGKS+LFNR+ K++A+V + G TRD R + I++ V +VDT GI D Sbjct: 8 IALIGQPNVGKSSLFNRIANKRIAIVSDMAGTTRDIRKHEIEILDRVGL-LVDTGGIDDT 66 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + + E A EA +ILF++D K D + L++ + +V NK+D Sbjct: 67 NDAIFSNVKRKAIETA-KEADIILFMVDGKNIPDDKDKELFYELQRLGKELALVVNKIDN 125 Query: 124 RIAQRNFYEIYSLDFKE--IVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 +E + + + IS H+ GT L I+K E E K+ Sbjct: 126 DKELERLWEFFEFGIGDENLFGISVSHNRGTKLLFEWIYKHLPVNLETVAREEAEALKKQ 185 Query: 182 EESPKE----------NITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLT 231 E E I S + +V+ + +A++GR NVGKS+++N ++G R + Sbjct: 186 REENFEFDDEEDFSSEGIESLEEETVEIDESKINVAIIGRVNVGKSSILNAIVGAERSVV 245 Query: 232 GSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIV 291 +G T D V S+ +K I DTAG+R+ I E +E+ + ++ + + +V Sbjct: 246 SPIAGTTIDPVDESFEYKEKQITFVDTAGLRRRGSI-EGIEKYALMRTKEMLEKANMALV 304 Query: 292 LLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDI 351 +LDA+ D +I V G ++ LNKWD + ++ Q + + + + Sbjct: 305 VLDASRELTDLDEKIAGLVDEYGLGTIIVLNKWD---ENMDTFQKIEEEIRRRFRFLSYA 361 Query: 352 YINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLK 411 I +S +TG ++ L ++EI + RI TS LN +++ +++ P+ Y R+ Sbjct: 362 PIIAVSAKTGRSIERLKDKIIEIFDNYTQRIPTSQLNKVIEEAVIRHSLPSPNGAYLRIY 421 Query: 412 YITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 Y TQ + PP + PN + SYKRYL+N LR F+ G PI + Sbjct: 422 YTTQFSTRPPKIALVMNKPNLLHYSYKRYLVNFLREKFNFEGTPIHVI 469 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 33/126 (26%), Positives = 62/126 (49%), Gaps = 13/126 (10%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP 264 +IA++G+PNVGKS+L NR+ + +G TRD + H IEI D G+ Sbjct: 7 KIALIGQPNVGKSSLFNRIANKRIAIVSDMAGTTRD-------IRKHEIEILDRVGLLVD 59 Query: 265 S----RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVL 319 + +++ +K++++ + + + ++D IP +K D + + G + L Sbjct: 60 TGGIDDTNDAIFSNVKRKAIETAKEADIILFMVDGKNIPDDK-DKELFYELQRLGKELAL 118 Query: 320 ALNKWD 325 +NK D Sbjct: 119 VVNKID 124 >gi|222823547|ref|YP_002575121.1| predicted GTP-binding protein [Campylobacter lari RM2100] gi|254783143|sp|B9KFN5|DER_CAMLR RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|222538769|gb|ACM63870.1| conserved hypothetical protein, predicted GTP-binding protein [Campylobacter lari RM2100] Length = 461 Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 130/456 (28%), Positives = 236/456 (51%), Gaps = 15/456 (3%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 +I ++G PNVGKS+LFNRL +K++A+ + G TRD + I+G ++D+ G+ + Sbjct: 3 SIILIGKPNVGKSSLFNRLARKRIAITSDISGTTRDTNKIEVQIDGKKALLIDSGGLDES 62 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + K + + A + +I +++D K D A ++K N PI +V NK+D Sbjct: 63 N--ELFKNVKANSLKAAKNSDIIFYMVDGKFLPDDEDKAFFYEMKKLNKPIALVINKIDN 120 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + +E + KE+ IS H++G EL ++ K+ N + +++ + E Sbjct: 121 KKDEERSWEFSNFGVKEVFNISVTHNIGIDELC-----MWASKFLNENF-LDADDEEDFE 174 Query: 184 SPKENI-TSEGKSSVKNISK-PLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 S EN + G +K I++ +++ ++GR NVGKS+L+N L+ R + +G T D Sbjct: 175 SYLENFDENSGDFKLKTINENHIKVGIIGRVNVGKSSLLNALVKEERSVVSDIAGTTIDP 234 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 V+ S K+ IE DTAG+RK +I + LE+ + ++ ++ + +++LDA F + Sbjct: 235 VNESIMHKDKIIEFVDTAGIRKRGKI-QGLERYALNRTEYALTNAQIALLVLDAAEGFNE 293 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVS-DKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 D RI V++ LNKWD D L++L+ K L I ++ +SG+ Sbjct: 294 LDERIAGLAAKHCLGVIIVLNKWDKSELDFDKTLKELKLDRFKFLAYAPVISVSALSGKR 353 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 + L+ +LE+ + +I T+ LN+ +++ +P P + + ++ Y Q +P Sbjct: 354 ---VHVLLDKILEVFANFTQKIPTAKLNALVEEATRAHPLPHDYGKLVKIYYAVQYDLAP 410 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 P + P + SYKRYL N++R F+ G+P+ Sbjct: 411 PKIALIMNRPKALHFSYKRYLQNQIRKQFNFEGVPL 446 >gi|157364503|ref|YP_001471270.1| small GTP-binding protein [Thermotoga lettingae TMO] gi|166920104|sp|A8F7S2|DER_THELT RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|157315107|gb|ABV34206.1| small GTP-binding protein [Thermotoga lettingae TMO] Length = 435 Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 138/470 (29%), Positives = 234/470 (49%), Gaps = 46/470 (9%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+ I G NVGKSTLFNRL+ ++ A+ G+TRD + G + N F + DT G+ + Sbjct: 3 TVVIAGRANVGKSTLFNRLIGRRKAITEKIEGVTRDIIKGLVVYNETSFLLYDTCGVFES 62 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD- 122 + M D+ A +A LILF++D ++GIT D + LRK +++V NK + Sbjct: 63 TRDPVLLAMRDKAFEAFRKADLILFVVDGRSGITSEDEYVAQQLRKIAKKVLMVINKSEN 122 Query: 123 TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 + ++N +I L F E + +SA+H EL I + ++ L E Sbjct: 123 MSVVEKNLPDIMKLGFAEYIPVSAQHGNNIDELLDKITNLLRESGEKSML-------FKE 175 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 SPK IA+VG+PNVGKS+L N LL +R G TRD V Sbjct: 176 SSPK-------------------IAIVGKPNVGKSSLFNALLNMDRATVTPVPGTTRDPV 216 Query: 243 S--ISWNWKNHPIEIFDTAGMRKPSRIT-ESLEQKTVKKSMQSVRTCETTIVLLDATIPF 299 I N K + + DTAGMR+ SRI +++EQ ++ +++ ++++ + ++++DAT Sbjct: 217 DEMIEINGKKYI--LVDTAGMRRKSRIERKTIEQFSISRTIDTIQSADVVLLVIDATEGV 274 Query: 300 EKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGR 359 +QD RI D + ++G A+V +NK+D+V+ + +D +P I I S Sbjct: 275 TRQDKRIADLILSSGRAMVCVINKFDLVNVR---KKDYEAALFTEMPFINFCRIVFTSAV 331 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYN-RLKYITQIQS 418 GL+ L ++ E + + ++ L+ + L +P +R N R+ I QI+ Sbjct: 332 KKSGLEKLFNAIDEAYESYCRKVPQQLLSKLASQLPLLSPA---LSRKNLRIYSIKQIKI 388 Query: 419 SPPSFLIFCTFPN----KIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 PP F+I + ++ +R++ R R++ +G P+ + F+S + Sbjct: 389 KPPKFVIMVNKKELTDYQTEKTLQRFI--RERVD-QFTGTPLVIEFKSRR 435 >gi|157737421|ref|YP_001490104.1| GTP-binding protein EngA [Arcobacter butzleri RM4018] gi|157699275|gb|ABV67435.1| GTP-binding protein [Arcobacter butzleri RM4018] Length = 485 Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 137/468 (29%), Positives = 226/468 (48%), Gaps = 19/468 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRD-RLYGQAIINGVIFNIVDTAGIADG 63 IA++G PNVGKS+LFNR+ K++A+V + G TRD R + I++ V +VDT GI D Sbjct: 8 IALIGQPNVGKSSLFNRIANKRIAIVSDMAGTTRDIRKHEIEILDRVGL-LVDTGGIDDT 66 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + + E A EA +ILF++D K D + L++ + +V NK+D Sbjct: 67 NDAIFSNVKRKAIETA-KEADIILFMVDGKNIPDDKDKELFYELQRLGKELALVVNKIDN 125 Query: 124 RIAQRNFYEIYSLDFKE--IVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 +E + + + IS H+ GT L I+K E E K+ Sbjct: 126 DKELERLWEFFEFGIGDENLFGISVSHNRGTKLLFEWIYKHLPVNLETVAREEAEALKKQ 185 Query: 182 EESPKE----------NITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLT 231 E E I S + +V+ + +A++GR NVGKS+++N ++G R + Sbjct: 186 REENFEFDDEEDFSSEGIESLEEETVEIDDSKINVAIIGRVNVGKSSVLNAIVGAERSVV 245 Query: 232 GSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIV 291 +G T D V S+ +K I DTAG+R+ I E +E+ + ++ + + +V Sbjct: 246 SPIAGTTIDPVDESFEYKEKQITFVDTAGLRRRGSI-EGIEKYALMRTKEMLEKANMALV 304 Query: 292 LLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDI 351 +LDA+ D +I V G ++ LNKWD + ++ Q + + + + Sbjct: 305 VLDASRELTDLDEKIAGLVDEYGLGTIIVLNKWD---ENMDTFQKIEEEIRRRFRFLSYA 361 Query: 352 YINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLK 411 I +S +TG ++ L ++EI + RI TS LN +++ +++ P+ Y R+ Sbjct: 362 PIIAVSAKTGRSIERLKDKIIEIFDNYTQRIPTSQLNKVIEEAVIRHSLPSPNGAYLRIY 421 Query: 412 YITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 Y TQ + PP + PN + SYKRYL+N LR F+ G PI + Sbjct: 422 YTTQFSTRPPKIALVMNKPNLLHYSYKRYLVNFLRERFNFEGTPIHVI 469 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 33/126 (26%), Positives = 62/126 (49%), Gaps = 13/126 (10%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP 264 +IA++G+PNVGKS+L NR+ + +G TRD + H IEI D G+ Sbjct: 7 KIALIGQPNVGKSSLFNRIANKRIAIVSDMAGTTRD-------IRKHEIEILDRVGLLVD 59 Query: 265 S----RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVL 319 + +++ +K++++ + + + ++D IP +K D + + G + L Sbjct: 60 TGGIDDTNDAIFSNVKRKAIETAKEADIILFMVDGKNIPDDK-DKELFYELQRLGKELAL 118 Query: 320 ALNKWD 325 +NK D Sbjct: 119 VVNKID 124 >gi|152993507|ref|YP_001359228.1| GTP-binding protein EngA [Sulfurovum sp. NBC37-1] gi|151425368|dbj|BAF72871.1| GTP-binding protein, Era/ThdF family [Sulfurovum sp. NBC37-1] Length = 467 Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 124/460 (26%), Positives = 231/460 (50%), Gaps = 18/460 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIING-VIFNIVDTAGIADG 63 +AI+G PNVGKS+LFNRL +++ A+ + G TRD I+G F ++DT GI Sbjct: 9 VAILGRPNVGKSSLFNRLARQRDAITSDVSGTTRDIKKRLVTISGNREFEVIDTGGI--D 66 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + + ++ D + A + A +I++++D K D + L+ P+ +V NK+D Sbjct: 67 YSSELFSKVADFSLKAADMADVIIYMVDGKTLPDEEDRELFYKLQALGKPLALVVNKIDN 126 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + ++E +S H+ ++ ++ + + PLE+ E+ E Sbjct: 127 DKEEERYWEFLEFGADATFPMSVSHNRYFNDFYAWLEQYIPAVEEKKPLELTED----EI 182 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 P E I + S+ + + +A++GR N GKS+L+N LLG R + +G T D + Sbjct: 183 DPFEEIVRDINSTAEEADNKISVAIIGRVNTGKSSLLNALLGEERSVVSDVAGTTIDPID 242 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + ++ I DTAG+RK S+I +E+ + ++ + + ++++DAT+ + D Sbjct: 243 ETIEHNDYEITFVDTAGIRKRSKIV-GIEKYALGRTEAMLEKADIALLIIDATVGVTELD 301 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKL--NLLQDLRT--KAIKNLPQIGDIYINTISGR 359 R+ + + ++ +NKWD+ +K + D+R K + P I TIS + Sbjct: 302 ERVAGLIEKFRLSALIVINKWDIRGEKTYEEAVDDIRDELKFLHYAPLI------TISAK 355 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 TG ++ ++ + I + +K RI+TS LN L++ ++ P+ ++K+ TQ ++ Sbjct: 356 TGMRVNKILDQITAIYERYKQRISTSKLNDVLREAMQRHHVPSYNGALVKIKFATQYETK 415 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 PP + P+ + SYKRYL N +R F G+P+ + Sbjct: 416 PPKIALITNRPDGLHFSYKRYLANYIRSKFDFEGVPLDIV 455 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 41/122 (33%), Positives = 62/122 (50%), Gaps = 1/122 (0%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD- 62 ++AI+G N GKS+L N L+ ++ +VV + G T D + N VDTAGI Sbjct: 204 SVAIIGRVNTGKSSLLNALLGEERSVVSDVAGTTIDPIDETIEHNDYEITFVDTAGIRKR 263 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 K I K +TE + +A + L +ID+ G+T D + + K + +IV NK D Sbjct: 264 SKIVGIEKYALGRTEAMLEKADIALLIIDATVGVTELDERVAGLIEKFRLSALIVINKWD 323 Query: 123 TR 124 R Sbjct: 324 IR 325 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 61/125 (48%), Gaps = 11/125 (8%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD----SVSISWNWKNHPIEIFDTAG 260 ++A++GRPNVGKS+L NRL +T SG TRD V+IS N E+ DT G Sbjct: 8 KVAILGRPNVGKSSLFNRLARQRDAITSDVSGTTRDIKKRLVTISG---NREFEVIDTGG 64 Query: 261 MRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLA 320 + S L K S+++ + I ++D +++D + + G + L Sbjct: 65 IDYSS----ELFSKVADFSLKAADMADVIIYMVDGKTLPDEEDRELFYKLQALGKPLALV 120 Query: 321 LNKWD 325 +NK D Sbjct: 121 VNKID 125 >gi|315452739|ref|YP_004073009.1| GTP-binding protein engA [Helicobacter felis ATCC 49179] gi|315131791|emb|CBY82419.1| GTP-binding protein engA [Helicobacter felis ATCC 49179] Length = 435 Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 133/455 (29%), Positives = 209/455 (45%), Gaps = 34/455 (7%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIA+VG PNVGKS+LFN LVK + A+ G TRD G + GV ++DT G+ G Sbjct: 3 TIALVGRPNVGKSSLFNCLVKSRQAITSAFAGTTRDIRQGVVSLGGVFVQLLDTGGLDPG 62 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLR--KKNIPIIIVSNKM 121 ++ Q+ + I + L+ +++D K P D F R +K ++ NK+ Sbjct: 63 H--ALGTQITKHSLETIQKCDLVFYVVDGKQ--IPLDEDKNYFYRICQKVRNCFLIVNKI 118 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D R Y S K + +SA H+ G L ++ Sbjct: 119 DNDQEAREAYSFSSFGAKAMFFVSASHNRGLQAL----------------IQATITQLNL 162 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 +ESP + I+ + +++ ++GR NVGKS+L+N L+ R L +G T D Sbjct: 163 QESPTQEISP--------LVSAIQVGIIGRVNVGKSSLLNALVQQERALVSEVAGTTIDP 214 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 V + I DTAG+R+ S+I + LE+ + ++ + + + I++LD ++PF Sbjct: 215 VDQHISHHGQEICFVDTAGLRQRSKI-QGLEKYALDRTTKVLEQSQIAILVLDVSVPFVD 273 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTG 361 D +I V VV+ NKWD+ + + K L I + + R Sbjct: 274 LDEKIAALVDKHRLGVVVVFNKWDIRHANFEAIMESFKHKFKFLHYAPTITASALDKRHV 333 Query: 362 EGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 E + D +LE+ + RI+TS LN + + ++P P+ + R+ Y TQ S PP Sbjct: 334 EKIKD---KILEVYAHFCKRISTSTLNQVIAEATQKHPLPSDHGKIVRIYYGTQFASCPP 390 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 + P + SYKRYLIN LR F G PI Sbjct: 391 QIALVMNRPKALHFSYKRYLINVLRQKFGFLGTPI 425 >gi|149173742|ref|ZP_01852371.1| probable GTP-binding protein [Planctomyces maris DSM 8797] gi|148847272|gb|EDL61606.1| probable GTP-binding protein [Planctomyces maris DSM 8797] Length = 468 Score = 187 bits (474), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 129/466 (27%), Positives = 221/466 (47%), Gaps = 33/466 (7%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 I IAIVG PNVGKS++FN L ++A+V G+TRDR+ F +VDT GI Sbjct: 3 IPKIAIVGRPNVGKSSIFNWLAGHRVAIVDPTAGVTRDRVTYLVHEKDRYFELVDTGGIG 62 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 + +++ + Q ++ I+EA LILF++D G+ D + + LR P I+ NK Sbjct: 63 ITDSDDLSEDIERQIQVGIDEADLILFVVDGSLGVVHLDEEVATRLRLIEKPKILCINKC 122 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D+ + + L +V S + + +EL + +I KQ P LE Sbjct: 123 DSTKTDDEAAQFFRLTNSPVVLTSVKGNRNRNEL---LDEIMKQLPPAEELE-------- 171 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 ES + ++++ + L+IA+VGR NVGKST IN L R++ +G TRDS Sbjct: 172 -ESEGDTLSADPE---------LKIAIVGRRNVGKSTFINALAESERMIVSEVAGTTRDS 221 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 V I + + + DT G+RK + +E + ++ +S+R ++ D+ K Sbjct: 222 VDIRFEFDDKSFLAIDTPGVRKRKSLANDIEFYGLTRAKRSIRRANVVLMFFDSQETVSK 281 Query: 302 QDLRIVDSVFNTGHAVVLALNKWD------MVSDKLNLLQDLRTKAIKNLPQIGDIYINT 355 D ++V + + +NKWD M S+K + + + +++ P + Sbjct: 282 VDKQLVAEIDENHKPCIFVINKWDLGREKKMTSEKWDEYLTSQFRTMRHAP------VAF 335 Query: 356 ISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQ 415 ++ + + ++ I K + R++T LN ++ N PP N ++ Y TQ Sbjct: 336 VTAKDSRNIKQVINLAQTIYKQSRMRVSTGRLNKIVRAAIQNNQPPYSKNHRPKIYYATQ 395 Query: 416 IQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 + + PP+ ++ C ES+KRYL LR IPI++ ++ Sbjct: 396 VATEPPTIVLKCNDQKLFSESWKRYLSGVLREALPFKEIPIKIYYR 441 >gi|206890575|ref|YP_002249177.1| ribosome-associated GTPase EngA [Thermodesulfovibrio yellowstonii DSM 11347] gi|238058979|sp|B5YFX9|DER_THEYD RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|206742513|gb|ACI21570.1| ribosome-associated GTPase EngA [Thermodesulfovibrio yellowstonii DSM 11347] Length = 448 Score = 186 bits (473), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 143/477 (29%), Positives = 236/477 (49%), Gaps = 43/477 (9%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVK---KKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTA 58 ++T+ IVG PNVGKSTLFNR++K K A+ PG+TRD YG A + F +VDT Sbjct: 1 MFTVVIVGRPNVGKSTLFNRMIKSDEKIKAITDKFPGVTRDINYGVAKWDDKEFIVVDTG 60 Query: 59 GIADGKNCS--IAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIII 116 G + I KQM +Q E+AI++A LI+ L+DSK G+ P D LR+ I+ Sbjct: 61 GFFPEEKIEDIIQKQMLEQIEMAISDADLIIHLLDSKEGLLPDDIETARQLRQTGKDILW 120 Query: 117 VSNKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIE 176 V NK+D Y+ YS+ +E++ IS G EL I KI ++ P+ + + Sbjct: 121 VVNKIDDPSKLSRIYDFYSIGTEELIPISGITGYGFDEL---IDKIIEKIPDTQPVNLEQ 177 Query: 177 NNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSG 236 N PK IAVVGRPNVGKST+IN LLG R++ G Sbjct: 178 QN-----LPK-------------------IAVVGRPNVGKSTIINALLGKKRMIVSPIPG 213 Query: 237 ITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQK------TVKKSMQSVRTCETTI 290 TRD++ + + DTAG+++ S + + Q+ K+++S+ + I Sbjct: 214 TTRDTIDAICTYYGKKYLLIDTAGIKRLSYYKKEISQEIYVERLAYFKALRSIERADVAI 273 Query: 291 VLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMV-SDKLNLLQDLRTKAIKNLPQIG 349 +++DA QD +I V +++ +NKWD++ +++ + T IK+ Sbjct: 274 LVIDALEGIVNQDQKIAGIVAEQKKGLIILINKWDLIPANERDKKAKFFTDEIKHKLWFV 333 Query: 350 DI--YINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRY 407 D Y+ T+S L + + +I + + R++TS LN + +L++ + + Sbjct: 334 DYAPYL-TVSAIDKTRLTKIFPLIDQILEEYSKRVSTSELNRLFSE-KLKDVIMSSHGKE 391 Query: 408 NRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 + YITQ+ +PP+F++F + + + + +++ LR F PI + + K Sbjct: 392 LKFYYITQVNVAPPTFVVFVNDQSAVKQHHIKFIEKLLRETFHFKFSPINIKIKQRK 448 >gi|294055426|ref|YP_003549084.1| ribosome-associated GTPase EngA [Coraliomargarita akajimensis DSM 45221] gi|293614759|gb|ADE54914.1| ribosome-associated GTPase EngA [Coraliomargarita akajimensis DSM 45221] Length = 514 Score = 186 bits (472), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 126/477 (26%), Positives = 225/477 (47%), Gaps = 54/477 (11%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA-- 61 T+A+VG PNVGKS LFNRL ++M++V + PG+TRD + + + + ++DT GI Sbjct: 7 TVALVGRPNVGKSRLFNRLCGRRMSIVHDMPGVTRDLISTEVRDD---YVLLDTGGIGME 63 Query: 62 -DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + IA DQ E AI A ++LF++D ++G+T D + LR+ +I+++NK Sbjct: 64 LEMTPKKIATAAEDQVEFAIQAATVVLFVVDVRSGVTALDEMVADKLRRYGKHVILIANK 123 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D+ + + + SL +++SAEH G + L+ I + K P Sbjct: 124 VDSSAEEADAEDFASLGLGAAIKVSAEHGRGVASLNEAI----EAKLGPKP--------E 171 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 +E KE K +RI++VGRPNVGKS+L N LL RL+ G TRD Sbjct: 172 GQEGDKE--------------KRIRISLVGRPNVGKSSLGNALLESTRLIVSDVPGTTRD 217 Query: 241 SVSISWNWKNH----PIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDAT 296 SV + +++ + DTAG+R ++ +E + ++ ++ + +++DA Sbjct: 218 SVELDLDYQKDGESIKFRLADTAGLRSKRKVGNPVEYFSNVRTQHAIERSDVVFLVIDAA 277 Query: 297 IPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDK---------------LNLLQDLRTKA 341 KQD + + + G A+V+ +NK D + ++ L ++ K Sbjct: 278 DGVTKQDQALAGDILDAGKALVVVVNKHDKLKERWDQEPIDGYKNLKHFLTSYEEALRKQ 337 Query: 342 IKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPP 401 + LP ++++ I+G ++ ++ + ++ T LN +Q P Sbjct: 338 LFFLPDPPVLFVSAINGFK---VESILEAAASTEASLDMKLPTGRLNRVVQDLFDARAPK 394 Query: 402 TIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 + + ++ Y Q + P +C ++ +Y+RYL L F L G P+R Sbjct: 395 IVGIKRFKVFYAVQTGTRPLRLRFYCNRKERLDPTYRRYLEKGLIHEFQLRGCPVRF 451 >gi|149006625|ref|ZP_01830324.1| phosphoglycerate dehydrogenase-related protein [Streptococcus pneumoniae SP18-BS74] gi|147761923|gb|EDK68886.1| phosphoglycerate dehydrogenase-related protein [Streptococcus pneumoniae SP18-BS74] Length = 358 Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 110/359 (30%), Positives = 195/359 (54%), Gaps = 36/359 (10%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAIVG PNVGKSTLFNR+ +++++V + G+TRDR+Y F+++DT GI D Sbjct: 5 TIAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRSFSMIDTGGI-DD 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + +Q+ Q E+A+ EA +I+F++ K GIT D + L K + P+I+ NK+D Sbjct: 64 VDAPFMEQIKHQAEIAMEEADVIVFVVSGKEGITDADEYVARKLYKTHKPVILAVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + Y+ Y+L E + IS+ H +GT ++ I + N P N+ EE Sbjct: 124 PEMRNDIYDFYALGLGEPLPISSVHGIGTGDVLDAIVE-------NLP------NEYEEE 170 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 +P ++ +++GRPNVGKS+LIN +LG +R++ +G TRD++ Sbjct: 171 NP----------------DVIKFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAID 214 Query: 244 ISW-NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + + + DTAGMRK ++ E+ E+ +V ++M+++ + +++++A + Sbjct: 215 THFTDTDGQEFTMIDTAGMRKSGKVYENTEKYSVMRAMRAIDRSDVVLMVINAEEGIREY 274 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDK----LNLLQDLRTKAIKNLPQIGDIYINTIS 357 D RI G +++ +NKWD + N +D+R + + LP I+++ ++ Sbjct: 275 DKRIAGFAHEAGKGMIIVVNKWDTLEKDNHTMKNWEEDIREQ-FQYLPYAPIIFVSALT 332 >gi|207743439|ref|YP_002259831.1| gtp-binding protein enga (partial sequence c terminus) [Ralstonia solanacearum IPO1609] gi|206594836|emb|CAQ61763.1| putative gtp-binding protein enga (partial sequence c terminus) [Ralstonia solanacearum IPO1609] Length = 363 Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 116/392 (29%), Positives = 193/392 (49%), Gaps = 39/392 (9%) Query: 85 LILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQRNFYEIYSLDFKEIVEI 144 +++F++D + G+ P D I +LRK I++ NK + + Y L + I Sbjct: 1 MVIFIVDGRLGLAPQDRVIADYLRKTGRRILLAVNKAEGMKYTAVATDFYELGLGDPRAI 60 Query: 145 SAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEESPKENITSEGKSSVKNISKPL 204 S+ H G +L + + Q + P E+ E + ++ Sbjct: 61 SSAHGDGVRDL---VDEALDQAFSERP-ELAEAAQAHDHG-------------------T 97 Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP 264 RIA+VGRPNVGKSTL+N L+G R++ G TRD++ + + P + DTAG+RK Sbjct: 98 RIAIVGRPNVGKSTLVNALIGEERVIAFDMPGTTRDAIYVDFERNGKPYTLIDTAGLRKR 157 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 ++ E++E+ +V K++QS+ ++LLDA QD I + +G A+V+ +NKW Sbjct: 158 GKVFEAIEKFSVVKTLQSIADANVVVLLLDAQQDISDQDAHIAGFIVESGRALVIGVNKW 217 Query: 325 DMVSD------KLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLW 378 D + K +L + L+ A N ++ IS + G+ LM SV + Sbjct: 218 DGLDGHARDRIKHDLERKLQFLAFAN--------VHYISAKQRTGIGALMKSVDDAYAAA 269 Query: 379 KTRITTSYLNSWLQKT-QLQNPPPTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESY 437 ++ T L LQ+ + Q P +R +L+Y Q S+PP +I + IPE+Y Sbjct: 270 MVKLPTPKLTRVLQEAVEFQQPRRAGVSR-PKLRYAHQGGSNPPIVVIHGNALSNIPETY 328 Query: 438 KRYLINRLRINFSLSGIPIRMCFQSSKNPYIK 469 +R+L R R F L G P+R+ F+++KNPY + Sbjct: 329 RRFLEGRFRDAFQLKGTPLRIEFRTNKNPYAQ 360 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 51/160 (31%), Positives = 81/160 (50%), Gaps = 9/160 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N L+ ++ + + PG TRD +Y NG + ++DTAG+ Sbjct: 99 IAIVGRPNVGKSTLVNALIGEERVIAFDMPGTTRDAIYVDFERNGKPYTLIDTAGLRKRG 158 Query: 65 NC--SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 +I K +T +I +A++++ L+D++ I+ D I F+ + ++I NK D Sbjct: 159 KVFEAIEKFSVVKTLQSIADANVVVLLLDAQQDISDQDAHIAGFIVESGRALVIGVNKWD 218 Query: 123 -------TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 RI ++ L F + ISA+ G L Sbjct: 219 GLDGHARDRIKHDLERKLQFLAFANVHYISAKQRTGIGAL 258 >gi|23011471|ref|ZP_00051819.1| COG1160: Predicted GTPases [Magnetospirillum magnetotacticum MS-1] Length = 481 Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 124/413 (30%), Positives = 206/413 (49%), Gaps = 32/413 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ A +G F +VDT G + Sbjct: 79 LAVVGRPNVGKSTLVNRILGRREAVVEDKPGVTRDRVSYPADWSGRRFTLVDTGGW-EVD 137 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I ++ +Q E+AI+ A +LF++D+ G T D + LR+ P+++ +NK+D + Sbjct: 138 VAGIESKVAEQAEVAISLADAVLFVVDATVGATATDERVVRLLRESGKPVVLCANKVDGQ 197 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + ++SL E +SA H GT +L P E ++ E Sbjct: 198 SGEADAAYLWSLGLGEPHPVSALHGRGTGDLLDAAMAAL-------PTE----SEHGEVR 246 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P + P R+A+VGRPNVGKS+L+N+L G +R++ +G TRD V Sbjct: 247 P---------------TGPRRVALVGRPNVGKSSLLNKLAGADRVVVDEIAGTTRDPVDE 291 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 K+ P + DTAG+R+ T+ + ++ ++ E +VL+DA++P +QD Sbjct: 292 LVTIKDVPYVLVDTAGIRRRVHQTKGADFYASLRTQAAIEKAELAVVLVDASVPLTEQDT 351 Query: 305 RIVDSVFNTGHAVVLALNKWDMVS--DKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 R++ G A ++ V + + + + K+L Q+ +S RTG Sbjct: 352 RVISPGRGRGP---RARHRVQQVGPHGRRXVARTSSARXEKDLVQVQWAPRVNVSARTGW 408 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQ 415 D L ++ W TRI T LN++L + +P P + R+ + TQ Sbjct: 409 HTDRLAPAMERALDSWDTRIPTGRLNAFLGELVAAHPHPLRGGKQPRILFATQ 461 >gi|332673360|gb|AEE70177.1| ribosome-associated GTPase EngA [Helicobacter pylori 83] Length = 460 Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 133/461 (28%), Positives = 225/461 (48%), Gaps = 31/461 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 10 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA-- 67 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSNKM 121 K+ ++K++ A + LIL+++D K+ P D + F + K N +V NK+ Sbjct: 68 KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVINKI 125 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF------KIFKQKYPNHPLEMI 175 D + Y S + ISA H+ G S L + +I +Q LE + Sbjct: 126 DNDKEKERAYAFSSFGMPKSFNISASHNRGISALIDAVLNALNLNQIIEQDLDADILESL 185 Query: 176 ENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQS 235 ENN EE+ +E I ++ ++GR NVGKS+L+N L R L S + Sbjct: 186 ENNAPKEETKEEVI---------------QVGIIGRVNVGKSSLLNALTKKERSLVSSVA 230 Query: 236 GITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDA 295 G T D + + + I DTAG+R +I +E+ ++++ +++ +++LD Sbjct: 231 GTTIDPIDETILIGDQKICFVDTAGIRHRGKIL-GIEKYALERTQKALEKSHIALLVLDV 289 Query: 296 TIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINT 355 + PF + D +I ++L LNKWD+ + + + L I + Sbjct: 290 STPFVELDEKISSLADKHSLGIILILNKWDIRYAPYEEIMATLKRKFRFLEYAPVITTSC 349 Query: 356 ISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQ 415 + R +D++ ++E+ + + RI TS LNS + + ++P P+ + ++ Y TQ Sbjct: 350 LKTR---HIDEIKHKIIEVYECFSKRIPTSLLNSVINQATQKHPLPSDGGKLVKVYYATQ 406 Query: 416 IQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 + PP + P + SYKRYLIN LR F+ G P+ Sbjct: 407 FATKPPQISLIMNRPKALHFSYKRYLINTLRKEFNFLGTPL 447 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 60/209 (28%), Positives = 101/209 (48%), Gaps = 18/209 (8%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + + I+G NVGKS+L N L KK+ ++V + G T D + +I VDTAGI Sbjct: 198 VIQVGIIGRVNVGKSSLLNALTKKERSLVSSVAGTTIDPIDETILIGDQKICFVDTAGIR 257 Query: 62 D-GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 GK I K ++T+ A+ ++H+ L ++D D I+S K ++ II++ NK Sbjct: 258 HRGKILGIEKYALERTQKALEKSHIALLVLDVSTPFVELDEKISSLADKHSLGIILILNK 317 Query: 121 MDTRIAQRNFYEIYS--------LDFKEIVEISAEHDLGTSEL-HSVI--FKIFKQKYPN 169 D R A + EI + L++ ++ S E+ H +I ++ F ++ P Sbjct: 318 WDIRYAP--YEEIMATLKRKFRFLEYAPVITTSCLKTRHIDEIKHKIIEVYECFSKRIPT 375 Query: 170 HPLEMIENNKRNEESPKENITSEGKSSVK 198 L N+ N+ + K + S+G VK Sbjct: 376 SLL----NSVINQATQKHPLPSDGGKLVK 400 >gi|255323406|ref|ZP_05364537.1| ribosome-associated GTPase EngA [Campylobacter showae RM3277] gi|255299443|gb|EET78729.1| ribosome-associated GTPase EngA [Campylobacter showae RM3277] Length = 467 Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 132/463 (28%), Positives = 233/463 (50%), Gaps = 29/463 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRD------RLYGQAIINGVIFNIVDTA 58 I +VG PNVGKS+LFNRL +++A+ + G TRD +Y ++ + ++D+ Sbjct: 4 IILVGKPNVGKSSLFNRLAGRRIAITSDVSGTTRDTNKTIIEIYDRSCV------LIDSG 57 Query: 59 GIADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVS 118 G+ D + + K + +T + I+F++D K + D A+ L K N+P +V Sbjct: 58 GLDD--SSELFKNVKAKTLAEARSSDAIIFMVDGKMMPSDEDKALYYALLKLNLPTALVI 115 Query: 119 NKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQK----YPNHPLEM 174 NK+D++ + YE + K IS H+ G EL I+K K + E Sbjct: 116 NKIDSKKDELRSYEFANFGAKTSFAISVSHNAGIDELADWIYKQLKDEIRPDVGEDLDEF 175 Query: 175 IENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQ 234 +EN + E +E +++ KNI ++ ++GR NVGKS+L+N L+ +R + Sbjct: 176 LENFGDDGEVVRE-MSAREDYERKNI----QVGIIGRVNVGKSSLLNALVKESRAVVSDI 230 Query: 235 SGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLD 294 +G T D V+ ++ +++ E DTAG+RK +I E +E+ + ++ ++ + +++LD Sbjct: 231 AGTTIDPVNETFVYEDRVFEFVDTAGIRKRGKI-EGIERYALNRTESALELADIALLVLD 289 Query: 295 ATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLN-LLQDLRTKAIKNLPQIGDIYI 353 ++ P + D RI V++ LNKWD + + +++R K K L I + Sbjct: 290 SSEPLTELDERIAGLAAKFELGVIIVLNKWDKSEEDFDKFSREIRDK-FKFLAYAPIISV 348 Query: 354 NTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYI 413 + + G+ + L +LE+ K + +I T+ LN +++ +P P + ++ Y Sbjct: 349 SALGGKRVHKIYPL---ILEVYKNYTQKIQTARLNEAIEEAVKAHPIPREKGKSVKIYYA 405 Query: 414 TQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 Q +PP + P + SYKRYL N+LR F LSG PI Sbjct: 406 VQFGFAPPKIALVMNRPRALHFSYKRYLTNKLREKFDLSGTPI 448 Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 35/127 (27%), Positives = 64/127 (50%), Gaps = 4/127 (3%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP 264 +I +VG+PNVGKS+L NRL G +T SG TRD+ + + D+ G+ Sbjct: 3 KIILVGKPNVGKSSLFNRLAGRRIAITSDVSGTTRDTNKTIIEIYDRSCVLIDSGGLDDS 62 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 S + ++++ KT+ ++ R+ + I ++D + +D + ++ L +NK Sbjct: 63 SELFKNVKAKTLAEA----RSSDAIIFMVDGKMMPSDEDKALYYALLKLNLPTALVINKI 118 Query: 325 DMVSDKL 331 D D+L Sbjct: 119 DSKKDEL 125 >gi|208434748|ref|YP_002266414.1| GTP-binding protein-like protein [Helicobacter pylori G27] gi|238058976|sp|B5Z7J9|DER_HELPG RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|208432677|gb|ACI27548.1| GTP-binding protein-like protein [Helicobacter pylori G27] Length = 460 Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 133/461 (28%), Positives = 224/461 (48%), Gaps = 31/461 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 10 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA-- 67 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSNKM 121 K+ ++K++ A + LIL+++D K+ P D I F + K N +V NK+ Sbjct: 68 KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKTNPNCFLVINKI 125 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF------KIFKQKYPNHPLEMI 175 D + Y S + IS H+ G S L + +I +Q LE + Sbjct: 126 DNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLNALSLNQIIEQDLDADILESL 185 Query: 176 ENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQS 235 ENN EE+ +E I ++ ++GR NVGKS+L+N L R L S + Sbjct: 186 ENNAPEEETKEEII---------------QVGIIGRVNVGKSSLLNALTKKERSLVSSVA 230 Query: 236 GITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDA 295 G T D + + + I DTAG+R +I +E+ ++++ +++ +++LD Sbjct: 231 GTTIDPIDETILIGDQKICFVDTAGIRHRGKIL-GIEKYALERTQKALEKSHIALLVLDV 289 Query: 296 TIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINT 355 + PF + D +I ++L LNKWD+ + + + L I + Sbjct: 290 SAPFVELDEKISSLADKHSLGIILILNKWDIRYAPYEEIMATLKRKFRFLEYAPVITTSC 349 Query: 356 ISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQ 415 + R +D++ ++E+ + + RI TS LNS + + ++P P+ + ++ Y TQ Sbjct: 350 LKAR---HIDEIKHKIIEVYECFSRRIPTSLLNSVITQATQKHPLPSDGGKLVKVYYATQ 406 Query: 416 IQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 + PP + P + SYKRYLIN LR F+ G P+ Sbjct: 407 FATKPPQISLIMNRPKALHFSYKRYLINTLRKEFNFLGTPL 447 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 45/126 (35%), Positives = 68/126 (53%), Gaps = 1/126 (0%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 I + I+G NVGKS+L N L KK+ ++V + G T D + +I VDTAGI Sbjct: 198 IIQVGIIGRVNVGKSSLLNALTKKERSLVSSVAGTTIDPIDETILIGDQKICFVDTAGIR 257 Query: 62 D-GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 GK I K ++T+ A+ ++H+ L ++D A D I+S K ++ II++ NK Sbjct: 258 HRGKILGIEKYALERTQKALEKSHIALLVLDVSAPFVELDEKISSLADKHSLGIILILNK 317 Query: 121 MDTRIA 126 D R A Sbjct: 318 WDIRYA 323 >gi|308063376|gb|ADO05263.1| GTP-binding protein EngA [Helicobacter pylori Sat464] Length = 460 Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 133/461 (28%), Positives = 225/461 (48%), Gaps = 31/461 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 10 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA-- 67 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSNKM 121 K+ ++K++ A + LIL+++D K+ P D + F + K N +V NK+ Sbjct: 68 KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVINKI 125 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF------KIFKQKYPNHPLEMI 175 D + Y S + IS H+ G S L I +I +Q LE + Sbjct: 126 DNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSALDLNQIIEQDLDADILESL 185 Query: 176 ENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQS 235 ENN EE+ +E I ++ ++GR NVGKS+L+N L R L S + Sbjct: 186 ENNAPKEETKEEVI---------------QVGIIGRVNVGKSSLLNALTKKERSLVSSVA 230 Query: 236 GITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDA 295 G T D + + + I DTAG+R +I +E+ ++++ +++ +++LD Sbjct: 231 GTTIDPIDETILIGDQKICFVDTAGIRHRGKIL-GIEKYALERTQKALEKSHIALLVLDV 289 Query: 296 TIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINT 355 + PF + D +I ++L LNKWD+ + +++ + + I T Sbjct: 290 SAPFVELDEKISSLADKHSLGIILILNKWDI---RYAPYEEIMATLKRKFRFLEYAPIIT 346 Query: 356 ISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQ 415 S +D++ ++E+ + + RI TS LNS + + ++P P+ + ++ Y TQ Sbjct: 347 TSCLKAHHIDEIKHKIIEVYECFSKRIPTSLLNSVINQATQKHPLPSDGGKLVKVYYATQ 406 Query: 416 IQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 + PP + P + SYKRYLIN LR F+ G P+ Sbjct: 407 FATKPPQISLIMNRPKALHFSYKRYLINTLRKEFNFLGTPL 447 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 62/209 (29%), Positives = 102/209 (48%), Gaps = 18/209 (8%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + + I+G NVGKS+L N L KK+ ++V + G T D + +I VDTAGI Sbjct: 198 VIQVGIIGRVNVGKSSLLNALTKKERSLVSSVAGTTIDPIDETILIGDQKICFVDTAGIR 257 Query: 62 D-GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 GK I K ++T+ A+ ++H+ L ++D A D I+S K ++ II++ NK Sbjct: 258 HRGKILGIEKYALERTQKALEKSHIALLVLDVSAPFVELDEKISSLADKHSLGIILILNK 317 Query: 121 MDTRIAQRNFYEIYS--------LDFKEIVEISAEHDLGTSEL-HSVI--FKIFKQKYPN 169 D R A + EI + L++ I+ S E+ H +I ++ F ++ P Sbjct: 318 WDIRYAP--YEEIMATLKRKFRFLEYAPIITTSCLKAHHIDEIKHKIIEVYECFSKRIPT 375 Query: 170 HPLEMIENNKRNEESPKENITSEGKSSVK 198 L N+ N+ + K + S+G VK Sbjct: 376 SLL----NSVINQATQKHPLPSDGGKLVK 400 >gi|150021499|ref|YP_001306853.1| GTP-binding protein EngA [Thermosipho melanesiensis BI429] gi|166225930|sp|A6LNG7|DER_THEM4 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|149794020|gb|ABR31468.1| small GTP-binding protein [Thermosipho melanesiensis BI429] Length = 437 Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 140/464 (30%), Positives = 236/464 (50%), Gaps = 36/464 (7%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+ IVG NVGKSTLFN+L+ KK ++V N G+TRD + + G F ++DT GI + Sbjct: 3 TVLIVGKSNVGKSTLFNKLIGKKKSIVDNKEGVTRDAVSDRVSYFGKSFKLIDTCGIFER 62 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 I++++ + T ++E +I+F++D K G+T D+ + LRK N +I+V NK + Sbjct: 63 PEDIISERLKNLTLNMLSEGDIIIFVVDGKYGLTSEDYHLADLLRKSNSDVILVVNKSEN 122 Query: 124 -RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 + NF + YSL F E + ISAE L + E KR E Sbjct: 123 EKKVFVNFDDFYSLGFGEPLFISAEQGKNIDRL------------------IEEVIKRLE 164 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 + + E K S+ +R+A++GRPN GKSTL N +L R L G TRD++ Sbjct: 165 KKGLKLEEEEEKDSI------IRVALIGRPNAGKSTLFNGILERERALVTPIPGTTRDAI 218 Query: 243 S--ISWNWKNHPIEIFDTAGMRKPSRIT-ESLEQKTVKKSMQSVRTCETTIVLLDATIPF 299 + N K + DTAG+R+ S++ +S++ + +S++S+ + + ++D+ Sbjct: 219 DELVEINGKKYL--FIDTAGLRRKSKVEYKSIDMYSNVRSIKSIELSDVVVFVIDSLEGI 276 Query: 300 EKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGR 359 QD +I N G A V+ NK D+V + Q+ ++ L + + +S + Sbjct: 277 THQDQKIAGIAENRGKATVVVFNKIDLVKNFKYRKQEFIEHFMERLYFVSYSPVVFVSAQ 336 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 G+ L+ ++ E R+ TS +N+ +Q+ + +PPP R ++ Y Q+ Sbjct: 337 ERYGIGKLIKAIKEAYNSLFYRVQTSAVNAVIQRMIMFSPPP----RGLKIYYGAQVDVK 392 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRIN-FSLSGIPIRMCFQS 462 PP+FL F T K+PE Y+ + +R N + +G PI + F++ Sbjct: 393 PPTFLFF-TNGKKVPEFYQNNIRKIIRENIYHFTGAPIFLKFKN 435 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 52/170 (30%), Positives = 87/170 (51%), Gaps = 12/170 (7%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 I +A++G PN GKSTLFN +++++ A+V PG TRD + ING + +DTAG+ Sbjct: 179 IIRVALIGRPNAGKSTLFNGILERERALVTPIPGTTRDAIDELVEINGKKYLFIDTAGLR 238 Query: 62 DGKNC---SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVS 118 SI N ++ +I + +++F+IDS GIT D I + ++V Sbjct: 239 RKSKVEYKSIDMYSNVRSIKSIELSDVVVFVIDSLEGITHQDQKIAGIAENRGKATVVVF 298 Query: 119 NKMDT----RIAQRNFYE-----IYSLDFKEIVEISAEHDLGTSELHSVI 159 NK+D + ++ F E +Y + + +V +SA+ G +L I Sbjct: 299 NKIDLVKNFKYRKQEFIEHFMERLYFVSYSPVVFVSAQERYGIGKLIKAI 348 >gi|308182994|ref|YP_003927121.1| GTP-binding protein EngA [Helicobacter pylori PeCan4] gi|308065179|gb|ADO07071.1| GTP-binding protein EngA [Helicobacter pylori PeCan4] Length = 460 Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 133/461 (28%), Positives = 224/461 (48%), Gaps = 31/461 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 10 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA-- 67 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSNKM 121 K+ ++K++ A + LIL+++D K+ P D + F + K N +V NK+ Sbjct: 68 KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREIFKTNPNCFLVINKI 125 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF------KIFKQKYPNHPLEMI 175 D + Y S + IS H+ G S L + I +I +Q LE + Sbjct: 126 DNDKEKERAYAFSSFGMPKSFNISVSHNRGISALINAILSALDLNQIIEQDLDADILESL 185 Query: 176 ENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQS 235 ENN EE+ +E I ++ ++GR NVGKS+L+N L R L S + Sbjct: 186 ENNAPKEETKEEVI---------------QVGIIGRVNVGKSSLLNALTKKERSLVSSMA 230 Query: 236 GITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDA 295 G T D + + + I DTAG+R +I +E+ + ++ +++ +++LD Sbjct: 231 GTTIDPIDETILIGDQKICFVDTAGIRHRGKIL-GIEKYALDRTQKALEKSHIALLVLDV 289 Query: 296 TIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINT 355 + PF + D +I ++L LNKWD+ + + + L I + Sbjct: 290 SAPFVELDEKISSLADKHSLGIILILNKWDIRYAPYEEIMAALKRKFRFLEYAPVITTSC 349 Query: 356 ISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQ 415 + R +D++ ++E+ + + RI TS LNS + + ++P P+ + ++ Y TQ Sbjct: 350 LKARH---IDEIKHKIIEVYECFSKRIPTSLLNSVIFQATQKHPLPSDGGKLVKVYYATQ 406 Query: 416 IQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 + PP + P + SYKRYLIN LR F+ G P+ Sbjct: 407 FATKPPQISLIMNRPKALHFSYKRYLINTLRKEFNFLGTPL 447 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 45/126 (35%), Positives = 68/126 (53%), Gaps = 1/126 (0%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + + I+G NVGKS+L N L KK+ ++V + G T D + +I VDTAGI Sbjct: 198 VIQVGIIGRVNVGKSSLLNALTKKERSLVSSMAGTTIDPIDETILIGDQKICFVDTAGIR 257 Query: 62 D-GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 GK I K D+T+ A+ ++H+ L ++D A D I+S K ++ II++ NK Sbjct: 258 HRGKILGIEKYALDRTQKALEKSHIALLVLDVSAPFVELDEKISSLADKHSLGIILILNK 317 Query: 121 MDTRIA 126 D R A Sbjct: 318 WDIRYA 323 >gi|162606364|ref|XP_001713212.1| hypothetical protein GTHECHR2139 [Guillardia theta] gi|12580678|emb|CAC26996.1| hypothetical protein [Guillardia theta] Length = 496 Score = 183 bits (465), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 138/469 (29%), Positives = 223/469 (47%), Gaps = 41/469 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVK--KKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAG--I 60 I +VG NVGKSTL NR+ K K ++V + G+T+D + +A F + DT G I Sbjct: 60 ITVVGRSNVGKSTLINRITKSNKDGSIVHDSEGVTKDIIQRKAFWKNYEFLMTDTGGFSI 119 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 K I K M Q +I ++ LI+F++D + IT + + +L+ + IP+I+V NK Sbjct: 120 NYNKKNEIYKNMTKQIFSSIEKSSLIIFVLDFFSQITQDEIELAEYLKFQEIPVILVVNK 179 Query: 121 MDT-RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNK 179 + I N +SL F E + ISA H + T EL LE I + Sbjct: 180 CENINIFNENSKIFWSLGFGEPIPISAIHGINTGEL----------------LEKIVSYL 223 Query: 180 RNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITR 239 N + E+ T+ +++++G+PNVGKST +N+LLG R + G T Sbjct: 224 PNSKKLSESYTT-------------KVSIIGKPNVGKSTFVNKLLGQYRSIVSDTPGTTS 270 Query: 240 DSVS--ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATI 297 DSV IS + DTAG+++ I +E V ++++SV+ E + ++D Sbjct: 271 DSVDSYISGGKNCNVYNFIDTAGIKRKKSIEFGIEYFMVNRTLKSVQKSECVLFMIDINN 330 Query: 298 PFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLN--LLQDLRTKAIKNLPQIGDIYINT 355 QD++I D + V+ LNKWD + K++ L DL ++ L I+ + Sbjct: 331 GITDQDVKISDIIVKENKCCVILLNKWDKIKKKMSKQTLIDLCKTSLSKLSWAEIIFTSA 390 Query: 356 ISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQ 415 ++G + + DL+ S L + ++TS LN +Q+ P + ++ Y TQ Sbjct: 391 LNGENCKSVFDLIDSALT---QYSKYVSTSILNEIIQEAVKWKRPSSKSQNNGKIFYCTQ 447 Query: 416 IQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 + PP+ IF P E+YK Y+ N R G PI++ + K Sbjct: 448 VSERPPTIAIFVNDPEYFNETYKSYVENYFRTCLKFDGSPIKILWTKRK 496 >gi|291276972|ref|YP_003516744.1| putative GTP-binding protein [Helicobacter mustelae 12198] gi|290964166|emb|CBG40011.1| putative GTP-binding protein [Helicobacter mustelae 12198] Length = 466 Score = 183 bits (465), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 138/470 (29%), Positives = 230/470 (48%), Gaps = 27/470 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAI+G PNVGKS+LFNRL ++++A+ + G T D + G I+DT GI K Sbjct: 4 IAILGKPNVGKSSLFNRLARERIAITSDVSGTTCDVNKKTIQLEGHPLQILDTGGI--DK 61 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N + A A LIL+++D K D + L K ++ NK+D Sbjct: 62 NNQYFSSIKKFAFQAAEMADLILYVVDGKLPPDDEDKRLFYALEKIQKKCFLIINKIDND 121 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPL-----EMIENNK 179 ++ Y+ + K IS H+ G S L S I + K P E +EN Sbjct: 122 KEKQCAYDFDNFGAKNSFFISISHNRGISHLISSIIYVLDLKAPQSQEQESIEEFLENTA 181 Query: 180 RNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITR 239 + + PK+ S+ I +I ++GR NVGKS+L+N L+G +R + G T Sbjct: 182 PHPQEPKDT------PSLPKI----KIGIIGRVNVGKSSLLNALVGKDRSVVSPIEGTTL 231 Query: 240 DSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPF 299 D V +K++ +E DTAG+R+ +I LE+ + ++ + + + +++LD + F Sbjct: 232 DPVDEGIIYKDYQLEFVDTAGLRRRGKI-RGLEKFALDRTGKMLEKSDIALLVLDVSTAF 290 Query: 300 EKQDLRIVDSVFNTGHAVVLALNKWDM-VSDKLNLLQDLRTKA--IKNLPQIGDIYINTI 356 D +I V +++ LNKWD+ +++ +++++LR K ++ P I T+ Sbjct: 291 VDLDEKISSLVDKYTLGIIIVLNKWDIRIAEYKSIIEELRRKFRFLEYAPII------TV 344 Query: 357 SGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQI 416 S + +L +L++ + + RI TS LNS + + ++P P+ + R+ Y TQ Sbjct: 345 SALNKRHIKELKEKILQVYQNFSFRIPTSQLNSTILEATKKHPLPSDHGKIIRIYYATQY 404 Query: 417 QSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNP 466 + PP + P + SYKRYL+N LR F G PI + +S K+P Sbjct: 405 DTCPPQISLVMNRPKSLHFSYKRYLVNYLRHCFEFEGTPIIITPRSKKSP 454 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 64/121 (52%), Gaps = 4/121 (3%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP 264 +IA++G+PNVGKS+L NRL +T SG T D + + HP++I DT G+ K Sbjct: 3 KIAILGKPNVGKSSLFNRLARERIAITSDVSGTTCDVNKKTIQLEGHPLQILDTGGIDKN 62 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 ++ S++ K + Q+ + + ++D +P + +D R+ ++ L +NK Sbjct: 63 NQYFSSIK----KFAFQAAEMADLILYVVDGKLPPDDEDKRLFYALEKIQKKCFLIINKI 118 Query: 325 D 325 D Sbjct: 119 D 119 >gi|223041036|ref|ZP_03611294.1| ribosome-associated GTPase EngA [Campylobacter rectus RM3267] gi|222877708|gb|EEF12831.1| ribosome-associated GTPase EngA [Campylobacter rectus RM3267] Length = 467 Score = 183 bits (465), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 132/463 (28%), Positives = 234/463 (50%), Gaps = 29/463 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRD------RLYGQAIINGVIFNIVDTA 58 I +VG PNVGKS+LFNRL +++A+ + G TRD +Y ++ + ++D+ Sbjct: 4 IILVGKPNVGKSSLFNRLAGRRIAITSDVSGTTRDTNKTIIEIYDKSCV------LIDSG 57 Query: 59 GIADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVS 118 G+ D + + K + +T + I+F++D K + D A+ L K N+P +V Sbjct: 58 GLDD--SSELFKNVKAKTLAEARSSDAIIFMVDGKMMPSDEDKALYYALLKLNLPTALVI 115 Query: 119 NKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKY-PNHPL---EM 174 NK+D++ + YE + K IS H+ G EL I+K K + P+ E Sbjct: 116 NKIDSKKDELRSYEFVNFGAKTSFAISVSHNAGIDELADWIYKQLKDEIRPDTGEDLDEF 175 Query: 175 IENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQ 234 +EN + E +E +++ KNI ++ ++GR NVGKS+L+N L+ +R + Sbjct: 176 LENFGDDGEVVRE-MSAREDYERKNI----QVGIIGRVNVGKSSLLNALVKESRAVVSDV 230 Query: 235 SGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLD 294 +G T D V+ ++ +++ E DTAG+RK +I E +E+ + ++ ++ + +++LD Sbjct: 231 AGTTIDPVNETFVYEDRIFEFVDTAGIRKRGKI-EGIERYALNRTESALELADIALLVLD 289 Query: 295 ATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLN-LLQDLRTKAIKNLPQIGDIYI 353 ++ P + D RI V++ LNKWD + + +++R K K L I + Sbjct: 290 SSEPLTELDERIAGLAAKFELGVIIVLNKWDKSEEDFDKFSREIRDK-FKFLAYAPIISV 348 Query: 354 NTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYI 413 + + G+ + L +LE+ K + +I T+ LN +++ +P P + ++ Y Sbjct: 349 SALGGKRVHKIYPL---ILEVYKNYTQKIQTARLNEAIEEAVKAHPIPREKGKSVKIYYA 405 Query: 414 TQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 Q +PP + P + SYKRYL N+LR F L G PI Sbjct: 406 VQFGFAPPKIALVMNRPRALHFSYKRYLTNKLREKFELPGTPI 448 Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 35/127 (27%), Positives = 62/127 (48%), Gaps = 4/127 (3%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP 264 +I +VG+PNVGKS+L NRL G +T SG TRD+ + + D+ G+ Sbjct: 3 KIILVGKPNVGKSSLFNRLAGRRIAITSDVSGTTRDTNKTIIEIYDKSCVLIDSGGLDDS 62 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 S + ++++ KT + R+ + I ++D + +D + ++ L +NK Sbjct: 63 SELFKNVKAKT----LAEARSSDAIIFMVDGKMMPSDEDKALYYALLKLNLPTALVINKI 118 Query: 325 DMVSDKL 331 D D+L Sbjct: 119 DSKKDEL 125 >gi|108563245|ref|YP_627561.1| GTP-binding protein EngA [Helicobacter pylori HPAG1] gi|122980493|sp|Q1CT35|DER_HELPH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|107837018|gb|ABF84887.1| GTP-binding protein-like protein [Helicobacter pylori HPAG1] Length = 461 Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 135/461 (29%), Positives = 227/461 (49%), Gaps = 30/461 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 10 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGMA-- 67 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSNKM 121 K+ ++K++ A + LIL+++D K+ P D I F + K N +V NK+ Sbjct: 68 KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVINKI 125 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF------KIFKQKYPNHPLEMI 175 D + Y S + IS H+ G S L + KI +Q LE + Sbjct: 126 DNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLSALNLNKIIEQDLDADILESL 185 Query: 176 ENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQS 235 ENN EE+ +E I +++ ++GR NVGKS+L+N L R L S + Sbjct: 186 ENNALEEETKEEEI--------------IQVGIIGRVNVGKSSLLNALTKKERSLVSSVA 231 Query: 236 GITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDA 295 G T D + + + I DTAG+R S+I +E+ ++++ +++ +++LD Sbjct: 232 GTTIDPIDETILIGDQKICFVDTAGIRHRSKIL-GIEKYALERTQKALEKSHIALLVLDV 290 Query: 296 TIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINT 355 + PF + D +I ++L LNKWD+ + + + + L I + Sbjct: 291 SAPFVELDEKISSLADKHSLGIILILNKWDIRYAPYEEIMETLKRKFRFLEYAPVITTSC 350 Query: 356 ISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQ 415 + R +D++ ++E+ + + RI TS LNS + + ++P P+ + ++ Y TQ Sbjct: 351 LKAR---HIDEIKHKIIEVYECFSKRIPTSLLNSVISQATQKHPLPSDGGKLVKVYYATQ 407 Query: 416 IQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 + PP + P + SYKRYLIN LR F+ G P+ Sbjct: 408 FATKPPQISLIMNRPKALHFSYKRYLINTLRKEFNFLGTPL 448 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 44/126 (34%), Positives = 67/126 (53%), Gaps = 1/126 (0%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 I + I+G NVGKS+L N L KK+ ++V + G T D + +I VDTAGI Sbjct: 199 IIQVGIIGRVNVGKSSLLNALTKKERSLVSSVAGTTIDPIDETILIGDQKICFVDTAGIR 258 Query: 62 D-GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 K I K ++T+ A+ ++H+ L ++D A D I+S K ++ II++ NK Sbjct: 259 HRSKILGIEKYALERTQKALEKSHIALLVLDVSAPFVELDEKISSLADKHSLGIILILNK 318 Query: 121 MDTRIA 126 D R A Sbjct: 319 WDIRYA 324 >gi|152991112|ref|YP_001356834.1| GTP-binding protein EngA [Nitratiruptor sp. SB155-2] gi|166225831|sp|A6Q4R8|DER_NITSB RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|151422973|dbj|BAF70477.1| GTP-binding protein, Era/ThdF family [Nitratiruptor sp. SB155-2] Length = 462 Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 135/461 (29%), Positives = 228/461 (49%), Gaps = 30/461 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAI+G PNVGKS+LFNR++K++ A+V G TRD I I+DT GI D Sbjct: 4 IAIIGKPNVGKSSLFNRILKQRDAIVSETEGTTRDVKRRIVQIGEKEAEILDTGGIED-- 61 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +++ ++ A +A +IL+++D K D I L+K I +V NK+D Sbjct: 62 RNELFEKVKQKSLEAAKDADIILYMVDGKKLPDEEDKQIFRSLQKLGKKIALVINKIDND 121 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYP-----NHPLEMIENNK 179 + N + Y ++I IS H+ L + K +K + L+ E Sbjct: 122 KEEENVWNFYEFGTQDIFPISVSHNRKVKRLLDWVEKQLPKKETIKIEIDEELDFDELLA 181 Query: 180 RNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITR 239 NE K+ ++E + +A++GR NVGKS+L+N LL R + +G T Sbjct: 182 INEGEKKQEESNE-----------INVAILGRVNVGKSSLLNALLKEERSIVSDVAGTTI 230 Query: 240 DSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPF 299 D++ S + + I DTAG+R+ +I +E+ + ++ + + + +++LDA+ Sbjct: 231 DTIDESTIYNDKVITFIDTAGIRRRGKIV-GIEKYALNRTQKMLERADVALLVLDASEGI 289 Query: 300 EKQDLRIVDSVFNTGHAVVLALNKWDMV----SDKLNLLQDLRTKAIKNLPQIGDIYINT 355 +QD RI + A ++ LNKWD+ + + ++D R K + P I T Sbjct: 290 TEQDERIAGYIDKYKLACIIVLNKWDIAKKSYEEAVKEVRD-RFKFLSFAPII------T 342 Query: 356 ISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQ 415 +S +T + +D L +L++ K + T + T LN +++ Q+++ P+ + ++ Y TQ Sbjct: 343 LSAKTRKRVDRLYDLILKVYKNYSTWLPTGQLNRVIKEAQIRHQIPSYKGKPVKILYATQ 402 Query: 416 IQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 + PP + P + SYKRYL N LR NF L G PI Sbjct: 403 YDTKPPKIALVMNRPEGLHFSYKRYLANVLRENFDLEGTPI 443 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 62/121 (51%), Gaps = 4/121 (3%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP 264 +IA++G+PNVGKS+L NR+L + G TRD EI DT G+ Sbjct: 3 KIAIIGKPNVGKSSLFNRILKQRDAIVSETEGTTRDVKRRIVQIGEKEAEILDTGGIEDR 62 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 + + E ++Q KS+++ + + + ++D +++D +I S+ G + L +NK Sbjct: 63 NELFEKVKQ----KSLEAAKDADIILYMVDGKKLPDEEDKQIFRSLQKLGKKIALVINKI 118 Query: 325 D 325 D Sbjct: 119 D 119 >gi|255521525|ref|ZP_05388762.1| GTP-binding protein EngA [Listeria monocytogenes FSL J1-175] Length = 259 Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 96/283 (33%), Positives = 161/283 (56%), Gaps = 29/283 (10%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST+FNR+V +++++V + PG+TRDR+Y A G FNI+DT GI D Sbjct: 6 VAIVGRPNVGKSTIFNRIVGERVSIVEDVPGVTRDRIYNSAEWLGKEFNIIDTGGI-DLS 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +Q+ Q E+AI+EA +I+F+ + + G+T D + L + N PI++ NK+D Sbjct: 65 DEPFLEQIRAQAEIAIDEADVIIFITNGREGVTDADEQVAKILYRSNKPIVLAINKVDNP 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + Y+ YSL F E IS H LG ++ + + +P + EE Sbjct: 125 EMRDQIYDFYSLGFGEPYPISGSHGLGLGDMLDAV----RAHFP---------KEEEEEY 171 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 P + + + +++GRPNVGKS+++N LLG +R++ +G TRD++ Sbjct: 172 PDDTV---------------KFSLIGRPNVGKSSILNALLGEDRVIVSDIAGTTRDAIDT 216 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCE 287 ++ + + DTAGMRK ++ ES E+ +V ++M+++ + Sbjct: 217 TYTFDGQDYVMIDTAGMRKRGKVYESTEKYSVLRAMRAIERSD 259 >gi|319956402|ref|YP_004167665.1| ribosome-associated GTPase enga [Nitratifractor salsuginis DSM 16511] gi|319418806|gb|ADV45916.1| ribosome-associated GTPase EngA [Nitratifractor salsuginis DSM 16511] Length = 462 Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 127/461 (27%), Positives = 235/461 (50%), Gaps = 20/461 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRD-RLYGQAIINGVIFNIVDTAGIADG 63 +AI+G PNVGKS+LFNRL +K+ A+ + G TRD + I F ++DT GI Sbjct: 4 VAILGRPNVGKSSLFNRLARKRDAITSDVSGTTRDIKKNIVTISEDREFELLDTGGI--D 61 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 ++ ++ ++ + ++ A EA +IL+++D K D + L+ + PI ++ NK+D Sbjct: 62 ESDALFSKVAEMSKRAAKEADVILYMVDGKKLPDEEDKKLFYELQALDKPIALIVNKIDN 121 Query: 124 -RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 + Q F+E + + IS H+ + L+ + ++Y + ++ + +E Sbjct: 122 DKEEQERFWEFIEFGAENVFPISVSHNRKLNPLYKWL-----ERYIPPAEKTAQSLQADE 176 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 + E + + + + +++A++GRPNVGKS+L+N LLG R + +G T D V Sbjct: 177 DFSLEQLLEMAEQPQEEEDRKIKVAILGRPNVGKSSLLNALLGEERSVVSEVAGTTIDPV 236 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + ++ I DTAG+R+ S+I +E+ + ++ + ++ + ++L+DAT + Sbjct: 237 DETIIHGDYEITFVDTAGIRRRSKIL-GIEKYALGRTEKMLQEADIALLLIDATTGVTEL 295 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKL--NLLQDLRT--KAIKNLPQIGDIYINTISG 358 D RI + ++ +NKWD+ +K +QD+R K + P I T+S Sbjct: 296 DERIAGLIDKYKLGALIVVNKWDIRGEKEYKEAIQDIRDELKFLHYAP------IITVSA 349 Query: 359 RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQS 418 +T + + ++ + I + +K RI TS LN +Q ++ P+ + R+K+ TQ + Sbjct: 350 KTKQRVSKILDQITAIYERYKQRIPTSKLNEAIQYAIRRHHVPSHHGQVVRIKFATQYAT 409 Query: 419 SPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 PP + P + SY RYL N LR F G+P+ + Sbjct: 410 KPPRIALVVNKPGLLHFSYIRYLANTLREQFDFEGVPLEIV 450 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 66/125 (52%), Gaps = 11/125 (8%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD----SVSISWNWKNHPIEIFDTAG 260 ++A++GRPNVGKS+L NRL +T SG TRD V+IS ++ E+ DT G Sbjct: 3 KVAILGRPNVGKSSLFNRLARKRDAITSDVSGTTRDIKKNIVTIS---EDREFELLDTGG 59 Query: 261 MRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLA 320 + + +++L K + S ++ + + + ++D +++D ++ + + L Sbjct: 60 IDE----SDALFSKVAEMSKRAAKEADVILYMVDGKKLPDEEDKKLFYELQALDKPIALI 115 Query: 321 LNKWD 325 +NK D Sbjct: 116 VNKID 120 >gi|71027773|ref|XP_763530.1| hypothetical protein [Theileria parva strain Muguga] gi|68350483|gb|EAN31247.1| GTP-binding protein, putative [Theileria parva] Length = 521 Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 131/463 (28%), Positives = 226/463 (48%), Gaps = 46/463 (9%) Query: 5 IAIVGAPNVGKSTLFNRLVK--KKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 ++IVG PNVGKS++FNR+ K +VV + PG TRDR Y A NG F I+DT G D Sbjct: 65 VSIVGRPNVGKSSIFNRITKLFHYGSVVNDAPGTTRDRQYSIADWNGKYFRIIDTGGYDD 124 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFL-----RKKNIPIIIV 117 + S ++ Q AI E+ I+F++D+ G+T D+ I +L +++++ I++ Sbjct: 125 DQLYS--DEIKSQINTAIKESSKIIFVVDALEGLTSMDYEIRDYLFKHTKKRRDLEILLC 182 Query: 118 SNKMDT-RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIE 176 NK ++ R E + L +SA H G +EL KY L + Sbjct: 183 VNKAESYRRGDILAQEFWKLGLGTPYPVSALHGTGLAELL--------DKYC--VLSALR 232 Query: 177 NNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSG 236 +R E+S K + S PN GKS+LIN+L+G NR + G Sbjct: 233 TLRR-EKSLKTHKLS--------------------PNSGKSSLINKLIGENRCIVSPDEG 271 Query: 237 ITRDSVSISWNWKNHPIEIFDTAGMRKPSRITES-LEQKTVKKSMQSVRTCETTIVLLDA 295 T+DS + + + DTAGM+ ++ S L QK+ S++S+R + I+++D+ Sbjct: 272 TTQDSTKVFVTY-GEKMSFVDTAGMKLLTKDRRSYLSQKS---SLKSIRASDVCILVIDS 327 Query: 296 TIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINT 355 + K D+++ + + + A ++ NKWD+V ++ ++ + L + + Sbjct: 328 SWGISKNDVKMAEEIKDENKAAIIVCNKWDLVDKTPSIFDNVVGYVREKLYWLDYADVLI 387 Query: 356 ISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQ 415 S ++G+ + ++ S+ + K + + + T+ +N L+ P R + Y TQ Sbjct: 388 TSAKSGQKVQNIFESIQKTYKQYCSNLPTNLVNKVLKDATFNRRLPVTHGRRLNIYYATQ 447 Query: 416 IQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 + S PP F +FC + + YK YL +R F L+G PI++ Sbjct: 448 VHSKPPGFTVFCNDSELMTDDYKEYLEKYMRNAFGLTGTPIQI 490 >gi|322379379|ref|ZP_08053750.1| GTP-binding protein EngA [Helicobacter suis HS1] gi|321148197|gb|EFX42726.1| GTP-binding protein EngA [Helicobacter suis HS1] Length = 448 Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 135/457 (29%), Positives = 215/457 (47%), Gaps = 36/457 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAI+G PNVGKS+LFN L++ + A+ + G TRD ++ G + DT G Sbjct: 14 IAILGKPNVGKSSLFNCLLRSRSAITFDIAGTTRDIKKQTFLLAGHGVELWDTGGF--DA 71 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFL--RKKNIPIIIVSNKMD 122 + +Q+ AI + LIL+++D K I P D L +K+ ++ NK+D Sbjct: 72 DSIFGEQIQSFNLEAIKASDLILYVVDGK--IPPQDEDKKYLLEIQKQKRACFLLVNKLD 129 Query: 123 TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 ++ + YE SL KE+ IS H+ G + L + I K F K P+ + N Sbjct: 130 NQVEELAGYEFASLGIKEMFFISVSHNKGLNTLTNAILKYFHLKPLESPIHLSTN----- 184 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 +++ ++GR NVGKS+L+N L+ R L G T D V Sbjct: 185 -------------------PAIQVGIIGRVNVGKSSLLNALIEQERALVSEIPGTTIDPV 225 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 S + N I DTAG+R+ S++ E LE+ + ++ + + +++LDA+ PF + Sbjct: 226 DQSISHHNQEICFVDTAGLRQRSKV-EGLEKFALDRTRKVLEKSHIALLVLDASTPFVEL 284 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLN-LLQDLRTKAIKNLPQIGDIYINTISGRTG 361 D +I V++ NKWD+ +++D + K K L + + IS R Sbjct: 285 DEKIASLAGEYNLGVIVVFNKWDIKHAGFETIIEDFKHK-FKFLQYAPLLTTSAISKRHI 343 Query: 362 EGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 + D +LE+ + RI+TS LN + + ++P P+ + R+ Y TQ S PP Sbjct: 344 LQIKD---KILEVYAYFSMRISTSTLNQTIIEATEKHPLPSDHGKIVRIYYSTQFASCPP 400 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 + P + SYKRYL N LR F G PI + Sbjct: 401 QIALVMNRPKALHFSYKRYLTNTLRAKFGFLGTPILL 437 Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 65/122 (53%), Gaps = 4/122 (3%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 L+IA++G+PNVGKS+L N LL +T +G TRD ++ H +E++DT G Sbjct: 12 LKIAILGKPNVGKSSLFNCLLRSRSAITFDIAGTTRDIKKQTFLLAGHGVELWDTGGFDA 71 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 S E ++ ++++++ + + ++D IP + +D + + + A L +NK Sbjct: 72 DSIFGEQIQS----FNLEAIKASDLILYVVDGKIPPQDEDKKYLLEIQKQKRACFLLVNK 127 Query: 324 WD 325 D Sbjct: 128 LD 129 >gi|224531730|ref|ZP_03672362.1| ribosome-associated GTPase EngA [Borrelia valaisiana VS116] gi|224511195|gb|EEF81601.1| ribosome-associated GTPase EngA [Borrelia valaisiana VS116] Length = 433 Score = 180 bits (457), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 128/456 (28%), Positives = 220/456 (48%), Gaps = 45/456 (9%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + IVG PNVGKS LFNR++ K ++ + G+TRD + + F ++DT G + Sbjct: 7 VLIVGRPNVGKSALFNRILDTKRSITESTYGVTRDLVEEVCKVGSFSFKLIDTGGFTILR 66 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + I+K + + ++ + +LIL ++D I P D+ I LRK + +I+V NK+DT+ Sbjct: 67 D-EISKIVVQKVLSSLEKVNLILLVLDVNE-ILPEDYQIIEKLRKYSSKVILVLNKVDTK 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + +E ++L FK +SA H G ++L + LE+ Sbjct: 125 DKEILAHEFHNLGFKRYFLVSAVHCRGITKLRDFL-----------KLEV---------- 163 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 GK++V++ +++ ++G+PN GKSTLIN L G + Q G TRD + Sbjct: 164 --------GKTNVED-EVDIKVGIIGKPNSGKSTLINYLSGNEISIVSDQPGTTRDFIKT 214 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + EI DTAG+R+ +R+ E +E +V ++++ + + +L+D QD Sbjct: 215 KFTSNGKVFEIIDTAGIRRRARVNEIVEYYSVNRALKVIDMVDIVFLLIDVKEELTSQDK 274 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 +I V G +++ +KWD+V + + L+++ P + I IS GL Sbjct: 275 KIAHYVAKKGKGIIIVFSKWDLVGESKGYFEALKSRVKFFFPILNFAPIFRISVHKKIGL 334 Query: 365 DDLMVSVLEINKLWKTRITT----SYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 + L L++ + + +T LN W++ L N +++KYITQ+ +P Sbjct: 335 NSLFKEALKLKDQLEFKTSTPDLNRMLNLWIKDYHL--------NISHKIKYITQVSVNP 386 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 F++F P SY YL+N LR IPI Sbjct: 387 VKFILFANKVKNFPNSYYNYLVNNLR-KIGYKNIPI 421 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 65/123 (52%), Gaps = 8/123 (6%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP 264 ++ +VGRPNVGKS L NR+L R +T S G+TRD V + ++ DT G Sbjct: 6 KVLIVGRPNVGKSALFNRILDTKRSITESTYGVTRDLVEEVCKVGSFSFKLIDTGGF--- 62 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDAT--IPFEKQDLRIVDSVFNTGHAVVLALN 322 + + + + + V+K + S+ +++LD +P +D +I++ + V+L LN Sbjct: 63 TILRDEISKIVVQKVLSSLEKVNLILLVLDVNEILP---EDYQIIEKLRKYSSKVILVLN 119 Query: 323 KWD 325 K D Sbjct: 120 KVD 122 >gi|308184621|ref|YP_003928754.1| GTP-binding protein EngA [Helicobacter pylori SJM180] gi|308060541|gb|ADO02437.1| GTP-binding protein EngA [Helicobacter pylori SJM180] Length = 462 Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 132/462 (28%), Positives = 224/462 (48%), Gaps = 31/462 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 10 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA-- 67 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSNKM 121 K+ ++K++ A + LIL+++D K+ P D I F + K N +V NK+ Sbjct: 68 KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKTNPNCFLVINKI 125 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF------KIFKQKYPNHPLEMI 175 D + Y S + IS H+ G S L + +I +Q LE + Sbjct: 126 DNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLNALNLNQIIEQDLDADILESL 185 Query: 176 EN-NKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQ 234 E N EE+ +E I +++ ++GR NVGKS+L+N L R L S Sbjct: 186 ETPNNALEETKEEEI--------------IQVGIIGRVNVGKSSLLNALTKKERSLVSSM 231 Query: 235 SGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLD 294 +G T D + + + I DTAG+R +I +E+ ++++ +++ +++LD Sbjct: 232 AGTTIDPIDETILIGDQKICFVDTAGIRHRGKIL-GIEKYALERTQKALEKSHIALLVLD 290 Query: 295 ATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYIN 354 + PF + D +I ++L LNKWD+ + + + L I + Sbjct: 291 VSAPFVELDEKISSLADKHSLGIILILNKWDIRYAPYEEIMATLKRKFRFLEYAPVITTS 350 Query: 355 TISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYIT 414 + R +D++ ++E+ + + RI TS LNS + + ++P P+ + ++ Y T Sbjct: 351 CLKAR---HIDEIKHKIIEVYECFSKRIPTSLLNSVISQATQKHPLPSDGGKLVKVYYAT 407 Query: 415 QIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 Q + PP + P + SYKRYLIN LR F+ G P+ Sbjct: 408 QFATKPPQISLVMNRPKALHFSYKRYLINTLRKEFNFLGTPL 449 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 45/126 (35%), Positives = 68/126 (53%), Gaps = 1/126 (0%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 I + I+G NVGKS+L N L KK+ ++V + G T D + +I VDTAGI Sbjct: 200 IIQVGIIGRVNVGKSSLLNALTKKERSLVSSMAGTTIDPIDETILIGDQKICFVDTAGIR 259 Query: 62 D-GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 GK I K ++T+ A+ ++H+ L ++D A D I+S K ++ II++ NK Sbjct: 260 HRGKILGIEKYALERTQKALEKSHIALLVLDVSAPFVELDEKISSLADKHSLGIILILNK 319 Query: 121 MDTRIA 126 D R A Sbjct: 320 WDIRYA 325 >gi|225551948|ref|ZP_03772888.1| ribosome-associated GTPase EngA [Borrelia sp. SV1] gi|225370946|gb|EEH00376.1| ribosome-associated GTPase EngA [Borrelia sp. SV1] Length = 433 Score = 179 bits (454), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 126/456 (27%), Positives = 214/456 (46%), Gaps = 45/456 (9%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + IVG PNVGKS LFNR++ K ++ + G+TRD + ++ F ++DT G K Sbjct: 7 VLIVGRPNVGKSALFNRILDTKRSITESTYGVTRDLVEEVCKVDSFKFKLIDTGGFTILK 66 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + I+K + + ++ + LIL ++D I D+ I LRK + +++V NK+DT+ Sbjct: 67 D-EISKIVVQKVLSSLKKVDLILLVLDINE-ILLEDYQIIERLRKYSSKVVLVLNKVDTK 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + +E ++L FK +SA H G ++L + Sbjct: 125 DKECLAHEFHNLGFKHYFLVSAAHCRGITKLRDFL------------------------- 159 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 K + G S S +++ ++G+PN GKSTLIN L G + Q G TRD + Sbjct: 160 -KVEVGEAGIES----SADIKVGIIGKPNSGKSTLINYLSGNEIAIVSDQPGTTRDFIKT 214 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + E+ DTAG+R+ +R+ E +E +V ++++ + + +L+D QD Sbjct: 215 KFTRNGKVFEVVDTAGIRRRARVNEIVEYYSVNRALKVIDMVDIVFLLIDVKEELTSQDK 274 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 +I V G +++ +KWD+V + + L+++ P + I IS GL Sbjct: 275 KIAHYVTKKGKGIIIVFSKWDLVDESKGYFEALKSRVKFFFPILNFAPIFRISVHKKIGL 334 Query: 365 DDLMVSVLEINKLWKTRITT----SYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 D L ++ + + +T LN W++ L N +++KYITQ+ ++P Sbjct: 335 DSLFKESFKLKDQLELKTSTPDLNKMLNLWIKDYHL--------NISHKIKYITQVSTNP 386 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 FL+F P SY YL+N LR IPI Sbjct: 387 VKFLLFANKIKNFPNSYYNYLVNNLR-KIGYRNIPI 421 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 65/121 (53%), Gaps = 4/121 (3%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP 264 ++ +VGRPNVGKS L NR+L R +T S G+TRD V + ++ DT G Sbjct: 6 KVLIVGRPNVGKSALFNRILDTKRSITESTYGVTRDLVEEVCKVDSFKFKLIDTGGF--- 62 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 + + + + + V+K + S++ + +++LD +D +I++ + VVL LNK Sbjct: 63 TILKDEISKIVVQKVLSSLKKVDLILLVLDIN-EILLEDYQIIERLRKYSSKVVLVLNKV 121 Query: 325 D 325 D Sbjct: 122 D 122 >gi|289811789|ref|ZP_06542418.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 377 Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 111/364 (30%), Positives = 184/364 (50%), Gaps = 18/364 (4%) Query: 115 IIVSNKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGT-SELHSVIFKIFKQKYPNHPLE 173 +V+NK D + + YSL EI I+A H G S L V+ P ++ Sbjct: 1 FLVANKTDGLDPDQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHVLLPWMDDVAPQEEVD 60 Query: 174 -------MIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGY 226 E + EE+P+++ + S P+++A+VGRPNVGKSTL NR+LG Sbjct: 61 EDAEYWAQFEAEQNGEEAPEDDFDPQ--------SLPIKLAIVGRPNVGKSTLTNRILGE 112 Query: 227 NRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTC 286 R++ G TRDS+ I + DTAG+RK +IT+++E+ +V K++Q++ Sbjct: 113 ERVVVYDMPGTTRDSIYIPMERDEREYVLIDTAGVRKRGKITDAVEKFSVIKTLQAIEDA 172 Query: 287 ETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLP 346 ++++DA QDL ++ + N+G ++V+ +NKWD +S ++ + ++ L Sbjct: 173 NVVLLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWDGLSQEVK--EQVKETLDFRLG 230 Query: 347 QIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNR 406 I ++ IS G G+ +L SV E R++T+ L + + PP + R Sbjct: 231 FIDFARVHFISALHGSGVGNLFESVREAYDSSTRRVSTAMLTRIMTMAVEDHQPPLVRGR 290 Query: 407 YNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNP 466 +LKY +PP +I +P+SYKRYL+N R + + G PIR+ F+ +NP Sbjct: 291 RVKLKYAHTGGYNPPIVVIHGNQVKDLPDSYKRYLMNYFRKSLEVMGTPIRIQFKEGENP 350 Query: 467 YIKK 470 Y K Sbjct: 351 YANK 354 Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 52/168 (30%), Positives = 91/168 (54%), Gaps = 9/168 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD-G 63 +AIVG PNVGKSTL NR++ ++ VV + PG TRD +Y + + ++DTAG+ G Sbjct: 92 LAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDEREYVLIDTAGVRKRG 151 Query: 64 KNCSIAKQMND-QTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 K ++ + +T AI +A+++L +ID++ GI+ D ++ F+ ++IV NK D Sbjct: 152 KITDAVEKFSVIKTLQAIEDANVVLLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWD 211 Query: 123 -------TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 ++ + + + +DF + ISA H G L + + + Sbjct: 212 GLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLFESVREAY 259 >gi|317009155|gb|ADU79735.1| GTP-binding protein EngA [Helicobacter pylori India7] Length = 462 Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 132/462 (28%), Positives = 224/462 (48%), Gaps = 31/462 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 10 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA-- 67 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSNKM 121 K+ ++K++ A + LIL+++D K+ P D I F + K N +V NK+ Sbjct: 68 KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVINKI 125 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF------KIFKQKYPNHPLEMI 175 D + Y S + IS H+ G S L + +I +Q LE + Sbjct: 126 DNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLNALNLNQIIEQDLDADILESL 185 Query: 176 EN-NKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQ 234 E N EE+ +E I +++ ++GR NVGKS+L+N L R L S Sbjct: 186 ETPNNALEETKEEEI--------------IQVGIIGRVNVGKSSLLNALTKKERSLVSSV 231 Query: 235 SGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLD 294 +G T D + + + I DTAG+R +I +E+ ++++ +++ +++LD Sbjct: 232 AGTTIDPIDETILIGDQKICFVDTAGIRHRGKIL-GIEKYALERTQKALEKSHIALLVLD 290 Query: 295 ATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYIN 354 + PF + D +I ++L LNKWD+ + + + L I + Sbjct: 291 VSAPFVELDEKISSLADKHSLGIILILNKWDIRYAPYEEIMATLKRKFRFLEYAPVITTS 350 Query: 355 TISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYIT 414 + R +D++ ++E+ + + RI TS LNS + + ++P P+ + ++ Y T Sbjct: 351 CLKAR---HIDEIKHKIIEVYECFSKRIPTSLLNSVITQATQKHPLPSDGGKLVKVYYAT 407 Query: 415 QIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 Q + PP + P + SYKRYLIN LR F+ G P+ Sbjct: 408 QFATKPPQISLIMNRPKALHFSYKRYLINTLRKEFNFLGTPL 449 Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 45/126 (35%), Positives = 68/126 (53%), Gaps = 1/126 (0%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 I + I+G NVGKS+L N L KK+ ++V + G T D + +I VDTAGI Sbjct: 200 IIQVGIIGRVNVGKSSLLNALTKKERSLVSSVAGTTIDPIDETILIGDQKICFVDTAGIR 259 Query: 62 D-GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 GK I K ++T+ A+ ++H+ L ++D A D I+S K ++ II++ NK Sbjct: 260 HRGKILGIEKYALERTQKALEKSHIALLVLDVSAPFVELDEKISSLADKHSLGIILILNK 319 Query: 121 MDTRIA 126 D R A Sbjct: 320 WDIRYA 325 >gi|216263461|ref|ZP_03435456.1| ribosome-associated GTPase EngA [Borrelia afzelii ACA-1] gi|215980305|gb|EEC21126.1| ribosome-associated GTPase EngA [Borrelia afzelii ACA-1] Length = 433 Score = 178 bits (452), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 127/456 (27%), Positives = 216/456 (47%), Gaps = 45/456 (9%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + IVG PNVGKS LFNR++ K ++ N G+TRD + + F ++DT G K Sbjct: 7 VLIVGRPNVGKSALFNRILDTKRSITENTYGVTRDLVEEVCKVGSFKFKLIDTGGFTILK 66 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + I+K + + ++ + LIL ++D I D+ I LRK + +I+V NK+DT+ Sbjct: 67 D-EISKIVVQKVLSSLEKVDLILLVLDVNE-ILLEDYQIIERLRKYSNKVILVLNKVDTK 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + +E ++L FK +SA H G ++L + +E+ E N +E + Sbjct: 125 DKEFLAHEFHNLGFKRCFLVSAVHCRGIAKLRDFL-----------KVEVGEANIEDEVN 173 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 +++ ++G+PN GKSTLIN L G + + G TRD + Sbjct: 174 -------------------IKVGIIGKPNSGKSTLINYLSGNEISIVSDKPGTTRDFIKT 214 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 EI DTAG+R+ +R+ E +E +V ++++ + + +L+D QD Sbjct: 215 KLTRNGKVFEIIDTAGIRRRARVNEIVEYYSVNRALKVIDMVDIVFLLIDVKEELTSQDK 274 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 +I V G +++ +KWD+V + + L+++ P + I IS GL Sbjct: 275 KIAHYVTKKGKGIIIVFSKWDLVKESKGYFEALKSRVKFFFPVLNFAPIFRISVHKKIGL 334 Query: 365 DDLMVSVLEINKLWKTRITT----SYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 D L ++ + + +T LN W++ L N +++KYITQ+ ++P Sbjct: 335 DSLFKEAFKLKDQLEFKTSTPDLNKMLNLWIKDYHL--------NVSHKIKYITQVSANP 386 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 F++F P SY YL+N LR + IPI Sbjct: 387 VRFILFANKIKNFPNSYYNYLVNNLR-KIGYNNIPI 421 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 65/121 (53%), Gaps = 4/121 (3%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP 264 ++ +VGRPNVGKS L NR+L R +T + G+TRD V + ++ DT G Sbjct: 6 KVLIVGRPNVGKSALFNRILDTKRSITENTYGVTRDLVEEVCKVGSFKFKLIDTGGF--- 62 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 + + + + + V+K + S+ + +++LD +D +I++ + + V+L LNK Sbjct: 63 TILKDEISKIVVQKVLSSLEKVDLILLVLDVN-EILLEDYQIIERLRKYSNKVILVLNKV 121 Query: 325 D 325 D Sbjct: 122 D 122 >gi|210135034|ref|YP_002301473.1| GTP-binding protein EngA [Helicobacter pylori P12] gi|238058975|sp|B6JM65|DER_HELP2 RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|210133002|gb|ACJ07993.1| GTP-binding protein-like protein [Helicobacter pylori P12] Length = 462 Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 132/462 (28%), Positives = 224/462 (48%), Gaps = 31/462 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 10 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA-- 67 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSNKM 121 K+ ++K++ A + LIL+++D K+ P D I F + K N +V NK+ Sbjct: 68 KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVINKI 125 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF------KIFKQKYPNHPLEMI 175 D + Y S + IS H+ G S L + +I +Q LE + Sbjct: 126 DNDKEKERAYAFSSFGTPKSFNISVSHNRGISALIDAVLNALNLNQIIEQDLDADILESL 185 Query: 176 EN-NKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQ 234 E N EE+ +E I +++ ++GR NVGKS+L+N L R L S Sbjct: 186 ETPNNALEETKEEEI--------------IQVGIIGRVNVGKSSLLNALTKKERSLVSSV 231 Query: 235 SGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLD 294 +G T D + + + I DTAG+R +I +E+ ++++ +++ +++LD Sbjct: 232 AGTTIDPIDETILIGDQKICFVDTAGIRHRGKIL-GIEKYALERTQKALEKSHIALLVLD 290 Query: 295 ATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYIN 354 + PF + D +I ++L LNKWD+ + + + L I + Sbjct: 291 VSTPFVELDEKISSLADKHSLGIILILNKWDIRYAPYEEIMATLKRKFRFLEYAPVITTS 350 Query: 355 TISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYIT 414 + R +D++ ++E+ + + RI TS LNS + + ++P P+ + ++ Y T Sbjct: 351 CLKAR---HIDEIKHKIIEVYECFSKRIPTSLLNSVISQATQKHPLPSDGGKLVKVYYAT 407 Query: 415 QIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 Q + PP + P + SYKRYLIN LR F+ G P+ Sbjct: 408 QFATKPPQISLIMNRPKALHFSYKRYLINTLRKEFNFLGTPL 449 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 44/126 (34%), Positives = 67/126 (53%), Gaps = 1/126 (0%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 I + I+G NVGKS+L N L KK+ ++V + G T D + +I VDTAGI Sbjct: 200 IIQVGIIGRVNVGKSSLLNALTKKERSLVSSVAGTTIDPIDETILIGDQKICFVDTAGIR 259 Query: 62 D-GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 GK I K ++T+ A+ ++H+ L ++D D I+S K ++ II++ NK Sbjct: 260 HRGKILGIEKYALERTQKALEKSHIALLVLDVSTPFVELDEKISSLADKHSLGIILILNK 319 Query: 121 MDTRIA 126 D R A Sbjct: 320 WDIRYA 325 >gi|317012645|gb|ADU83253.1| GTP-binding protein EngA [Helicobacter pylori Lithuania75] Length = 461 Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 134/464 (28%), Positives = 225/464 (48%), Gaps = 36/464 (7%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 10 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA-- 67 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSNKM 121 K+ ++K++ A + LIL+++D K+ P D I F + K N +V NK+ Sbjct: 68 KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKTNPNCFLVINKI 125 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF------KIFKQKYPNHPLEMI 175 D + Y S + IS H+ G S L + +I +Q LE + Sbjct: 126 DNDKEKERAYAFSSFGIPKSFNISVSHNRGISALIDAVLNALNLNQIIEQDLDADILESL 185 Query: 176 ENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQS 235 E E KE I +++ ++GR NVGKS+L+N L R L S + Sbjct: 186 ETPNNALEENKEEI--------------IQVGIIGRVNVGKSSLLNALTKKERSLVSSVA 231 Query: 236 GITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDA 295 G T D + + + I DTAG+R +I +E+ ++++ +++ +++LD Sbjct: 232 GTTIDPIDETILIGDQKICFVDTAGIRHRGKIL-GIEKYALERTQKALEKSHIVLLVLDV 290 Query: 296 TIPFEKQDLRIVDSVFNTGHAVVLALNKWDM-VSDKLNLLQDLRTKA--IKNLPQIGDIY 352 + PF + D +I ++L LNKWD+ + ++ L+ K ++ P I Sbjct: 291 SAPFVELDEKISSLADKHSLGIILILNKWDIRYAPYEEIMATLKRKFRFLEYAPVI---- 346 Query: 353 INTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKY 412 T S +D++ ++E+ + + RI TS LNS + + ++P P+ + ++ Y Sbjct: 347 --TTSCLKACHIDEIKHKIIEVYECFSKRIPTSLLNSVISQATQKHPLPSDGGKLVKVYY 404 Query: 413 ITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 TQ + PP + P + SYKRYLIN LR F+ G P+ Sbjct: 405 ATQFATKPPQISLIMNRPKALHFSYKRYLINTLRKEFNFLGTPL 448 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 61/209 (29%), Positives = 103/209 (49%), Gaps = 18/209 (8%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 I + I+G NVGKS+L N L KK+ ++V + G T D + +I VDTAGI Sbjct: 199 IIQVGIIGRVNVGKSSLLNALTKKERSLVSSVAGTTIDPIDETILIGDQKICFVDTAGIR 258 Query: 62 D-GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 GK I K ++T+ A+ ++H++L ++D A D I+S K ++ II++ NK Sbjct: 259 HRGKILGIEKYALERTQKALEKSHIVLLVLDVSAPFVELDEKISSLADKHSLGIILILNK 318 Query: 121 MDTRIAQRNFYEIYS--------LDFKEIVEISAEHDLGTSEL-HSVI--FKIFKQKYPN 169 D R A + EI + L++ ++ S E+ H +I ++ F ++ P Sbjct: 319 WDIRYAP--YEEIMATLKRKFRFLEYAPVITTSCLKACHIDEIKHKIIEVYECFSKRIPT 376 Query: 170 HPLEMIENNKRNEESPKENITSEGKSSVK 198 L N+ ++ + K + S+G VK Sbjct: 377 SLL----NSVISQATQKHPLPSDGGKLVK 401 >gi|183220801|ref|YP_001838797.1| GTP-binding protein EngA [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910901|ref|YP_001962456.1| GTP-binding protein EngA [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775577|gb|ABZ93878.1| GTPase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779223|gb|ABZ97521.1| GTP-binding protein EngA [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 450 Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 133/467 (28%), Positives = 230/467 (49%), Gaps = 49/467 (10%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIIN----GVIFNIVDTAGI 60 + IVG NVGKSTLFN +++ + A+ N G+TRD L Q + + F + DT G+ Sbjct: 7 VTIVGRQNVGKSTLFNAILRAQSAITENTAGVTRDVL--QKTVERAEFKIPFTLSDTPGL 64 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNI----PIII 116 I+K++ + + + LIL +ID K + YD+ + + +K I ++ Sbjct: 65 DIENIDEISKEIIEIAFEHLRHSDLILHVIDHK-DLRKYDYKLIDYFKKDEILKEKNVLT 123 Query: 117 VSNKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIE 176 + NK+DT + + Y+L E++ ISA LG F + QK + Sbjct: 124 LINKVDTEQDEYDLEPFYTLGLNELLPISA---LGRRN-----FDLLYQKINF----FLP 171 Query: 177 NNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSG 236 + + +E P +IA++G+PN GKS+L+N LGY R + G Sbjct: 172 DKIKTQEDPY-----------------CKIAIIGKPNSGKSSLLNTFLGYKRAVVSEVPG 214 Query: 237 ITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDAT 296 TRDSVS + ++NH +EI DTAG+R+ S+ ESLE + K+++ S+ + ++L+DA Sbjct: 215 TTRDSVSDQFFFQNHKLEIIDTAGIRRKSKTGESLEFYSYKRTLHSLGEADVVVLLVDAM 274 Query: 297 IPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKL-NLLQDLRTKAIKNLPQIGDIYINT 355 + D +I + G +++A+NKWD+V +K N +D + + L + + + + Sbjct: 275 KGLGEFDKKIFGEIQELGKPMIVAVNKWDLVPEKESNSWKDYKDRMEAKLSILKERPLLS 334 Query: 356 ISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQ 415 +S + L+ SV+ + + + ++TT LN WL K +N NR ++ Y TQ Sbjct: 335 LSAKEKLRTHKLLESVVALYEKSQKKLTTRQLNDWLSKWGGKNKVQKASNRPPKVYYATQ 394 Query: 416 IQSSPPSFLIFCT----FPNKIPESYKRYLINRLRINFSLSGIPIRM 458 + P L F FP+ I Y++ ++ F L G+ + + Sbjct: 395 VSQIPFKILFFVNDTKLFPSNILSFYRKSIVK----EFGLDGLSVEI 437 >gi|297380037|gb|ADI34924.1| GTP-binding protein EngA [Helicobacter pylori v225d] Length = 461 Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 133/461 (28%), Positives = 225/461 (48%), Gaps = 30/461 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 10 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA-- 67 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSNKM 121 K+ ++K++ A + LIL+++D K+ P D + F + K N +V NK+ Sbjct: 68 KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVINKI 125 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF------KIFKQKYPNHPLEMI 175 D + Y S + IS H+ G S L I +I +Q LE + Sbjct: 126 DNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSALDLNQIIEQDLDADILESL 185 Query: 176 ENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQS 235 ENN EE+ +E I +++ ++GR NVGKS+L+N L R L S + Sbjct: 186 ENNAPEEETKEEEI--------------IQVGIIGRVNVGKSSLLNALTKKERSLVSSMA 231 Query: 236 GITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDA 295 G T D + + + I DTAG+R +I +E+ ++++ +++ +++LD Sbjct: 232 GTTIDPIDETILIGDQKICFVDTAGIRHRGKIL-GIEKYALERTQKALEKSHIVLLVLDV 290 Query: 296 TIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINT 355 + PF + D +I ++L LNKWD+ + + + L I + Sbjct: 291 SAPFVELDEKISSLADKHSLGIILILNKWDIRYAPYEEIMATLKRKFRFLEYAPVITTSC 350 Query: 356 ISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQ 415 + R +D++ ++E+ + + RI TS LNS + + ++P P+ + ++ Y TQ Sbjct: 351 LKARH---IDEIKHKIIEVYECFSKRIPTSLLNSVINQATQKHPLPSDGGKLVKVYYATQ 407 Query: 416 IQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 + PP + P + SYKRYLIN LR F+ G P+ Sbjct: 408 FATKPPQISLIMNRPKALHFSYKRYLINTLRKEFNFLGTPL 448 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 62/209 (29%), Positives = 103/209 (49%), Gaps = 18/209 (8%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 I + I+G NVGKS+L N L KK+ ++V + G T D + +I VDTAGI Sbjct: 199 IIQVGIIGRVNVGKSSLLNALTKKERSLVSSMAGTTIDPIDETILIGDQKICFVDTAGIR 258 Query: 62 D-GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 GK I K ++T+ A+ ++H++L ++D A D I+S K ++ II++ NK Sbjct: 259 HRGKILGIEKYALERTQKALEKSHIVLLVLDVSAPFVELDEKISSLADKHSLGIILILNK 318 Query: 121 MDTRIAQRNFYEIYS--------LDFKEIVEISAEHDLGTSEL-HSVI--FKIFKQKYPN 169 D R A + EI + L++ ++ S E+ H +I ++ F ++ P Sbjct: 319 WDIRYAP--YEEIMATLKRKFRFLEYAPVITTSCLKARHIDEIKHKIIEVYECFSKRIPT 376 Query: 170 HPLEMIENNKRNEESPKENITSEGKSSVK 198 L N+ N+ + K + S+G VK Sbjct: 377 SLL----NSVINQATQKHPLPSDGGKLVK 401 >gi|254779193|ref|YP_003057298.1| GTP-binding protein EngA [Helicobacter pylori B38] gi|254001104|emb|CAX29059.1| Putative GTP-binding protein, EngA family [Helicobacter pylori B38] Length = 461 Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 134/461 (29%), Positives = 225/461 (48%), Gaps = 30/461 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 10 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA-- 67 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSNKM 121 K+ ++K++ A + LIL+++D K+ P D I F + K N +V NK+ Sbjct: 68 KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVINKI 125 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF------KIFKQKYPNHPLEMI 175 D + Y S + IS H+ G S L I +I +Q LE + Sbjct: 126 DNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAILDTLNLNQIIEQDLDADILESL 185 Query: 176 ENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQS 235 ENN EE+ +E I +++ ++GR NVGKS+L+N L R L S + Sbjct: 186 ENNASEEETKEEEI--------------IQVGIIGRVNVGKSSLLNALTKKERSLVSSMA 231 Query: 236 GITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDA 295 G T D + + + I DTAG+R +I +E+ ++++ +++ +++LD Sbjct: 232 GTTIDPIDETILIGDQKICFVDTAGIRHRGKIL-GIEKYALERTQKALEKSHIALLVLDV 290 Query: 296 TIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINT 355 + PF + D +I ++L LNKWD+ + + + L I + Sbjct: 291 SAPFVELDEKISSLADKHSLGIILILNKWDIRYAPYEEIMATLKRKFRFLEYAPVITTSC 350 Query: 356 ISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQ 415 + R +D++ ++E+ + + RI TS LNS + + ++P P+ + ++ Y TQ Sbjct: 351 LKARH---IDEIKHKIIEVYECFSKRIPTSLLNSVIFQATQKHPLPSDGGKLVKVYYATQ 407 Query: 416 IQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 + PP + P + SYKRYLIN LR F+ G P+ Sbjct: 408 FATKPPQISLIMNRPKALHFSYKRYLINTLRKEFNFLGTPL 448 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 45/126 (35%), Positives = 68/126 (53%), Gaps = 1/126 (0%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 I + I+G NVGKS+L N L KK+ ++V + G T D + +I VDTAGI Sbjct: 199 IIQVGIIGRVNVGKSSLLNALTKKERSLVSSMAGTTIDPIDETILIGDQKICFVDTAGIR 258 Query: 62 D-GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 GK I K ++T+ A+ ++H+ L ++D A D I+S K ++ II++ NK Sbjct: 259 HRGKILGIEKYALERTQKALEKSHIALLVLDVSAPFVELDEKISSLADKHSLGIILILNK 318 Query: 121 MDTRIA 126 D R A Sbjct: 319 WDIRYA 324 >gi|212702039|ref|ZP_03310167.1| hypothetical protein DESPIG_00041 [Desulfovibrio piger ATCC 29098] gi|212674554|gb|EEB35037.1| hypothetical protein DESPIG_00041 [Desulfovibrio piger ATCC 29098] Length = 382 Score = 177 bits (449), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 109/390 (27%), Positives = 194/390 (49%), Gaps = 32/390 (8%) Query: 75 QTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQRNFY-EI 133 Q E A+ +A + F++D + G+ P D + + +R+ +P + V NK+D + E Sbjct: 19 QAEAAMKDACAVAFVVDGRDGLLPLDEYLAAHIRRMGLPTLCVVNKVDGLEKEDELLAEF 78 Query: 134 YSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEESPKENITSEG 193 +SL F ++ +SAEH L + + Y + E P Sbjct: 79 HSLGFP-LLPVSAEHGHNIRALTEELADLLPDDY-----------EAEHEPPA------- 119 Query: 194 KSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPI 253 LR+A++GRPN GKS++IN L G R++ +G TRDSV + + Sbjct: 120 ----------LRLAMLGRPNAGKSSMINALAGEERMIVSDVAGTTRDSVDVRFERDGQDY 169 Query: 254 EIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNT 313 DTAG+R+ ++IT+ +E+ +V +++S + T++ LDAT +QD R++D + Sbjct: 170 VFVDTAGVRRRTKITDIVEKYSVNAALKSTTKADVTLLTLDATEGVSQQDKRLMDLLDTR 229 Query: 314 GHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 ++ +NK D+V L+ L + L + I T+S G GL+ ++ + Sbjct: 230 KIPFMVLVNKCDLVP--AGQLKQLLQNVSEMLAFCKHVPILTVSALKGTGLNKILPMARK 287 Query: 374 INKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKI 433 I++ R+ T LN +++ ++ PP + + Y+TQ +S PP+F+ F + +++ Sbjct: 288 IHEECAIRVPTGQLNRAMEEVLTRHQPPVVKRVRAKFFYLTQAESQPPTFVFFVSDADRV 347 Query: 434 PESYKRYLINRLRINFSLSGIPIRMCFQSS 463 PESY RYL LR F ++ P+R+ +SS Sbjct: 348 PESYARYLERALRRIFGITHAPMRLHLRSS 377 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 63/120 (52%), Gaps = 2/120 (1%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI-ADG 63 +A++G PN GKS++ N L ++ +V + G TRD + + +G + VDTAG+ Sbjct: 122 LAMLGRPNAGKSSMINALAGEERMIVSDVAGTTRDSVDVRFERDGQDYVFVDTAGVRRRT 181 Query: 64 KNCSIAKQMNDQTEL-AINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 K I ++ + L + +A + L +D+ G++ D + L + IP +++ NK D Sbjct: 182 KITDIVEKYSVNAALKSTTKADVTLLTLDATEGVSQQDKRLMDLLDTRKIPFMVLVNKCD 241 >gi|109947730|ref|YP_664958.1| GTP-binding protein EngA [Helicobacter acinonychis str. Sheeba] gi|123362586|sp|Q17WL7|DER_HELAH RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|109714951|emb|CAJ99959.1| GTP-binding protein [Helicobacter acinonychis str. Sheeba] Length = 462 Score = 177 bits (449), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 132/461 (28%), Positives = 222/461 (48%), Gaps = 29/461 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAI+G PNVGKS+LFNRL K+++A+ + G TRD + +NG ++DT G+A Sbjct: 10 TIAILGQPNVGKSSLFNRLAKERIAITSDFVGTTRDINKRKITLNGHEVELLDTGGMA-- 67 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSNKM 121 K+ ++K++ A + LIL+++D K+ P D I F + K N +V NK+ Sbjct: 68 KDAFLSKEIKAFNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREIFKINPNCFLVINKI 125 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF------KIFKQKYPNHPLEMI 175 D + Y S + IS H+ G S L I KI +Q LE + Sbjct: 126 DNDKEKERSYAFSSFGMPKSFNISVSHNRGISALIDAILDALGLTKIIEQDLDIDILESL 185 Query: 176 ENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQS 235 E E+ E + +++ ++GR NVGKS+L+N L R + S + Sbjct: 186 ETPNNTEDGNNE-------------EEIIQVGIIGRVNVGKSSLLNVLTQKERSIVSSVA 232 Query: 236 GITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDA 295 G T D + + KN I DTAG+R +I +E+ ++++ +++ +++LD Sbjct: 233 GTTIDPIDETILVKNQKICFVDTAGIRHKGKIL-GIEKYALERTQKALEKSHIALLVLDV 291 Query: 296 TIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINT 355 + PF + D +I ++L LNKWD+ + + + L I + Sbjct: 292 SAPFVELDEKISSLADKHSLGIILILNKWDIRYAPYEEIMATLKRKFRFLEYAPVITTSC 351 Query: 356 ISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQ 415 + R ++++ ++E+ + + RI TS LNS + + ++P P+ + ++ Y TQ Sbjct: 352 LKTR---HIEEIKHKIIEVYECFSKRIPTSLLNSVISQATQKHPLPSDGGKLVKVYYATQ 408 Query: 416 IQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 + PP + P + SYKRYLIN LR F+ G P+ Sbjct: 409 FATKPPQISLVMNRPKALHFSYKRYLINTLRKEFNFLGTPL 449 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 43/126 (34%), Positives = 68/126 (53%), Gaps = 1/126 (0%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI- 60 I + I+G NVGKS+L N L +K+ ++V + G T D + ++ VDTAGI Sbjct: 200 IIQVGIIGRVNVGKSSLLNVLTQKERSIVSSVAGTTIDPIDETILVKNQKICFVDTAGIR 259 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 GK I K ++T+ A+ ++H+ L ++D A D I+S K ++ II++ NK Sbjct: 260 HKGKILGIEKYALERTQKALEKSHIALLVLDVSAPFVELDEKISSLADKHSLGIILILNK 319 Query: 121 MDTRIA 126 D R A Sbjct: 320 WDIRYA 325 >gi|257460130|ref|ZP_05625234.1| ribosome-associated GTPase EngA [Campylobacter gracilis RM3268] gi|257442571|gb|EEV17710.1| ribosome-associated GTPase EngA [Campylobacter gracilis RM3268] Length = 461 Score = 177 bits (448), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 128/460 (27%), Positives = 223/460 (48%), Gaps = 22/460 (4%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 ++ I+G PNVGKS+LFNRL ++A+ + G TRD +A I ++D+ G+ D Sbjct: 3 SLIIIGRPNVGKSSLFNRLAGARIAITSDVAGTTRDTNRAEAEIFDRRVRVIDSGGLDD- 61 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + ++ +T A LI+F+ D K + + I L++ PI + NK+D Sbjct: 62 -TSELFARVQAKTLSEAKSADLIIFMTDGKLLPSDDERRIFFSLQRLGKPIALAVNKIDG 120 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNK---- 179 + + +E K IS H+ G EL I+ + I ++ Sbjct: 121 KRDEERSWEFNEFGVK-FFPISVSHNSGIDELKEWIYGFLDPAPARQDEDEIFDDFIEGF 179 Query: 180 RNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITR 239 +E PKE G+ SK + + ++GR NVGKS+L+N L+G R + +G T Sbjct: 180 NDEGEPKE-----GRDEEFYASKTIGVGIIGRVNVGKSSLLNALVGSQRSVVSDYAGTTI 234 Query: 240 DSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPF 299 D V+ S + +E DTAG+R+ +I E +E+ + ++ + ++ + T+++LDA+ P Sbjct: 235 DPVNESTEFGGRTLEFIDTAGIRRRGKI-EGIERFALNRTEKILQNSDITLLVLDASEPL 293 Query: 300 EKQDLRIVDSVFNTGHAVVLALNKWDMVS-DKLNLLQDLRT--KAIKNLPQIGDIYINTI 356 + D RI +++ LNKWD+ D +DLR K + P I ++ Sbjct: 294 NELDERIAGLAAKFELGLIIILNKWDLCERDYDEFCRDLRDRFKFLSYAPII------SV 347 Query: 357 SGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQI 416 S + + + +LE+ + ++ T+ +N ++ +P P + ++ Y QI Sbjct: 348 SATDKKRIHKIYPLILEVYSNFTRKLGTARINEAVEAAIKAHPIPRERGKSVKIYYAAQI 407 Query: 417 QSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 +PP + P + SYKRYL+NRLR +F+LSG P+ Sbjct: 408 GFAPPKIALVMNRPQALHFSYKRYLMNRLRASFALSGSPL 447 >gi|261329213|emb|CBH12192.1| GTP-binding protein, putative [Trypanosoma brucei gambiense DAL972] Length = 576 Score = 177 bits (448), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 140/476 (29%), Positives = 222/476 (46%), Gaps = 43/476 (9%) Query: 5 IAIVGAPNVGKSTLFNRL-----VKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAG 59 IAIVG N GKS+LFN L V + VV + GITRD + GQA + G+ F I+DT G Sbjct: 110 IAIVGRMNSGKSSLFNLLRLEPTVPGRSNVVRDFDGITRDSVEGQAQLEGMHFTIIDTPG 169 Query: 60 IADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 + G+ M ++ + A +F+ I P + ++ +L K++P+++++N Sbjct: 170 MVQGR-------MVEEAFRTVETADAAIFVTAVDEDIMPEELSLMQYLHLKHMPVVLLAN 222 Query: 120 KMDTRIAQRNFYEIY-----SLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEM 174 KMD + Q E SL F + SA G L +V+ + Y H + Sbjct: 223 KMD--LIQEEEEEAVLDRYNSLGFGNAIPFSARRKSGLEMLAAVLEPL----YHIHAMHK 276 Query: 175 IENN-------KRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYN 227 +EN+ + +ES E I S + +RIA+VGR N GKS+L+NRL+G+ Sbjct: 277 VENDWDIEDLAMQGDESAMEEIRERNCSD-----RFIRIAIVGRTNSGKSSLVNRLVGFE 331 Query: 228 RLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGM-RKPSRITESLEQKTVKKSMQSVRTC 286 R + TRD V + ++K +++ DTAG+ R R + S+ +R Sbjct: 332 RNRAVDEKNSTRDPVELPCSYKGRKLKLIDTAGLARHRYRADRDFIGRIHGLSVNEIRFA 391 Query: 287 ETTIVLLDATIPF-EKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNL 345 IV+ DAT K D+ ++ SV G +L NKWD V D+ + + K + + Sbjct: 392 HVVIVVFDATEGHPNKYDMAVLHSVAAEGRPFLLCANKWDAVLDQSATAEAIDFKIKRQV 451 Query: 346 PQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFN 405 ++ +S TG L LM LE+ W R+ + L +K + P Sbjct: 452 REVKYSNAVVVSAHTGLNLTLLMDQALELYDKWNKRVRRAELTRLWRKMEKSVIIPYHVA 511 Query: 406 RYNRLKYITQIQSSPPSFLIFCTFPNK---IPESYKRYLINRLRINFSLSGIPIRM 458 R R ITQ+ + PP+FL+ N +P++ + + N L F G+PIR+ Sbjct: 512 RIGR---ITQVNTRPPTFLLQLQTKNDSNTLPKALQEMMKNTLVEEFDFRGVPIRL 564 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 39/133 (29%), Positives = 63/133 (47%), Gaps = 16/133 (12%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQS------GITRDSVSISWNWKNHPIEIFD 257 LRIA+VGR N GKS+L N LL + G + GITRDSV + I D Sbjct: 108 LRIAIVGRMNSGKSSLFN-LLRLEPTVPGRSNVVRDFDGITRDSVEGQAQLEGMHFTIID 166 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 T GM ++ + V+++ ++V T + I + ++L ++ + V Sbjct: 167 TPGM---------VQGRMVEEAFRTVETADAAIFVTAVDEDIMPEELSLMQYLHLKHMPV 217 Query: 318 VLALNKWDMVSDK 330 VL NK D++ ++ Sbjct: 218 VLLANKMDLIQEE 230 >gi|111115337|ref|YP_709955.1| GTP-binding protein EngA [Borrelia afzelii PKo] gi|122956350|sp|Q0SMZ9|DER_BORAP RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|110890611|gb|ABH01779.1| GTP-binding protein [Borrelia afzelii PKo] Length = 433 Score = 177 bits (448), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 126/456 (27%), Positives = 215/456 (47%), Gaps = 45/456 (9%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + IVG PNVGKS LFNR++ K ++ N G+TRD + + F ++DT G K Sbjct: 7 VLIVGRPNVGKSALFNRILDTKRSITENTYGVTRDLVEEVCKVGSFKFKLIDTGGFTILK 66 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + I+K + + ++ + LIL ++D I D+ I LRK + +I+V NK+D + Sbjct: 67 D-EISKIVVQKVLSSLEKVDLILLVLDVNE-ILLEDYQIIERLRKYSNKVILVLNKVDAK 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + +E ++L FK +SA H G ++L + +E+ E N +E + Sbjct: 125 DKEFLAHEFHNLGFKRCFLVSAVHCRGIAKLRDFL-----------KVEVGEANIEDEVN 173 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 +++ ++G+PN GKSTLIN L G + + G TRD + Sbjct: 174 -------------------IKVGIIGKPNSGKSTLINYLSGNEISIVSDKPGTTRDFIKT 214 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 EI DTAG+R+ +R+ E +E +V ++++ + + +L+D QD Sbjct: 215 KLTRNGKVFEIIDTAGIRRRARVNEIVEYYSVNRALKVIDMVDIVFLLIDVKEELTSQDK 274 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 +I V G +++ +KWD+V + + L+++ P + I IS GL Sbjct: 275 KIAHYVTKKGKGIIIVFSKWDLVKESKGYFEALKSRVKFFFPVLNFAPIFRISVHKKIGL 334 Query: 365 DDLMVSVLEINKLWKTRITT----SYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 D L ++ + + +T LN W++ L N +++KYITQ+ ++P Sbjct: 335 DSLFKEAFKLKDQLEFKTSTPDLNKMLNLWIKDYHL--------NVSHKIKYITQVSANP 386 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 F++F P SY YL+N LR + IPI Sbjct: 387 VRFILFANKIKNFPNSYYNYLVNNLR-KIGYNNIPI 421 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/153 (26%), Positives = 75/153 (49%), Gaps = 5/153 (3%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP 264 ++ +VGRPNVGKS L NR+L R +T + G+TRD V + ++ DT G Sbjct: 6 KVLIVGRPNVGKSALFNRILDTKRSITENTYGVTRDLVEEVCKVGSFKFKLIDTGGF--- 62 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 + + + + + V+K + S+ + +++LD +D +I++ + + V+L LNK Sbjct: 63 TILKDEISKIVVQKVLSSLEKVDLILLVLDVN-EILLEDYQIIERLRKYSNKVILVLNKV 121 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTIS 357 D DK L + K + ++ I+ Sbjct: 122 D-AKDKEFLAHEFHNLGFKRCFLVSAVHCRGIA 153 >gi|119953297|ref|YP_945506.1| GTP-binding protein EngA [Borrelia turicatae 91E135] gi|119862068|gb|AAX17836.1| GTP-binding protein [Borrelia turicatae 91E135] Length = 438 Score = 177 bits (448), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 123/447 (27%), Positives = 216/447 (48%), Gaps = 44/447 (9%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 ++ IVG PNVGKSTLFN+L+ ++ G+TRD + ++ F ++D G Sbjct: 11 SVLIVGRPNVGKSTLFNKLLSSNRSITDEIYGVTRDLIKEICTVDSYKFYLIDAGGFTLL 70 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 ++ +++ + ++ ++ LILF++D I D+ + LRK + I++V NK+D+ Sbjct: 71 RD-ELSRVVVNKVISLLDSIDLILFVLDVNE-ILSEDYELIERLRKYSDKIVLVLNKIDS 128 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 Q YE +L F++ +SA H G + L +IF + Sbjct: 129 HHKQALTYEFQNLGFQKSFLVSATHGKGVNSL-----RIFLK------------------ 165 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 S GK ++ + + ++I ++G+PN GKSTLIN L G + +G TRD V Sbjct: 166 ------NSVGKLAIDD-NVDVKIGLIGKPNSGKSTLINFLAGREVSIVSRVAGTTRDFVK 218 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + E+ DTAG+R+ +R+ E +E +V ++++ + + +L+D QD Sbjct: 219 ARFQRNGKTFELIDTAGIRRRARVNELIEHYSVSRALRVIDMVDIVFLLVDVKEDLTAQD 278 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 +I G +++ KWD+V K + L+ + P + I IS EG Sbjct: 279 KKIAHYATKRGKGIIIVFTKWDLVKSKSGYFEALKNRVKFFFPILNFSPILRISAHRREG 338 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNS----WLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 +D+L +++ K + +I+T+ LN W++ L N +++KYITQI + Sbjct: 339 VDNLFKEAIKLKKQLELKISTADLNKMLSLWIKDYHL--------NASHKVKYITQISVN 390 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLR 446 P F++F P SY YL+N +R Sbjct: 391 PVKFILFANKITNFPNSYYNYLVNNIR 417 >gi|72390988|ref|XP_845788.1| GTP-binding protein [Trypanosoma brucei TREU927] gi|62359296|gb|AAX79737.1| GTP-binding protein, putative [Trypanosoma brucei] gi|70802324|gb|AAZ12229.1| GTP-binding protein, putative [Trypanosoma brucei brucei strain 927/4 GUTat10.1] Length = 576 Score = 177 bits (448), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 140/476 (29%), Positives = 222/476 (46%), Gaps = 43/476 (9%) Query: 5 IAIVGAPNVGKSTLFNRL-----VKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAG 59 IAIVG N GKS+LFN L V + VV + GITRD + GQA + G+ F I+DT G Sbjct: 110 IAIVGRMNSGKSSLFNLLRLEPTVPGRSNVVRDFDGITRDSVEGQAQLEGMHFTIIDTPG 169 Query: 60 IADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 + G+ M ++ + A +F+ I P + ++ +L K++P+++++N Sbjct: 170 MVQGR-------MVEEAFRTVETADAAIFVTAVDEDIMPEELSLMQYLHLKHMPVVLLAN 222 Query: 120 KMDTRIAQRNFYEIY-----SLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEM 174 KMD + Q E SL F + SA G L +V+ + Y H + Sbjct: 223 KMD--LIQEEEEEAVLDRYNSLGFGNAIPFSARRKSGLEMLAAVLEPL----YHIHAMHK 276 Query: 175 IENN-------KRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYN 227 +EN+ + +ES E I S + +RIA+VGR N GKS+L+NRL+G+ Sbjct: 277 VENDWDIEDLAMQGDESAMEEIRERNCSD-----RFIRIAIVGRTNSGKSSLVNRLVGFE 331 Query: 228 RLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGM-RKPSRITESLEQKTVKKSMQSVRTC 286 R + TRD V + ++K +++ DTAG+ R R + S+ +R Sbjct: 332 RNRAVDEKNSTRDPVELPCSYKGRKLKLIDTAGLARHRYRADRDFIGRIHGLSVNEIRFA 391 Query: 287 ETTIVLLDATIPF-EKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNL 345 IV+ DAT K D+ ++ SV G +L NKWD V D+ + + K + + Sbjct: 392 HVVIVVFDATEGHPNKYDMAVLHSVAAEGRPFLLCANKWDAVLDQSATAEAIDFKIKRQV 451 Query: 346 PQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFN 405 ++ +S TG L LM LE+ W R+ + L +K + P Sbjct: 452 REVKYSNAVVVSAHTGLNLTLLMDQALELYDKWNKRVRRAELTRLWRKMEKSVIIPYHVA 511 Query: 406 RYNRLKYITQIQSSPPSFLIFCTFPNK---IPESYKRYLINRLRINFSLSGIPIRM 458 R R ITQ+ + PP+FL+ N +P++ + + N L F G+PIR+ Sbjct: 512 RIGR---ITQVNTRPPTFLLQLQTKNDSNTLPKALQEMMKNTLVEEFDFRGVPIRL 564 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 39/133 (29%), Positives = 63/133 (47%), Gaps = 16/133 (12%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQS------GITRDSVSISWNWKNHPIEIFD 257 LRIA+VGR N GKS+L N LL + G + GITRDSV + I D Sbjct: 108 LRIAIVGRMNSGKSSLFN-LLRLEPTVPGRSNVVRDFDGITRDSVEGQAQLEGMHFTIID 166 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 T GM ++ + V+++ ++V T + I + ++L ++ + V Sbjct: 167 TPGM---------VQGRMVEEAFRTVETADAAIFVTAVDEDIMPEELSLMQYLHLKHMPV 217 Query: 318 VLALNKWDMVSDK 330 VL NK D++ ++ Sbjct: 218 VLLANKMDLIQEE 230 >gi|226320990|ref|ZP_03796535.1| ribosome-associated GTPase EngA [Borrelia burgdorferi 29805] gi|226233591|gb|EEH32327.1| ribosome-associated GTPase EngA [Borrelia burgdorferi 29805] Length = 433 Score = 176 bits (447), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 126/456 (27%), Positives = 214/456 (46%), Gaps = 45/456 (9%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + IVG PNVGKS LFNR++ K ++ + G+TRD + ++ F ++DT G K Sbjct: 7 VLIVGRPNVGKSALFNRILDTKRSITESTYGVTRDLVEEVCKVDSFKFKLIDTGGFTILK 66 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + I+K + + ++ + LIL ++D I D+ I LRK + +++V NK+DT+ Sbjct: 67 D-EISKIVVQKVLSSLEKVDLILLVLDINE-ILLEDYQIIERLRKYSSKVVLVLNKVDTK 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + +E ++L FK +SA H G ++L + +E K ES Sbjct: 125 DKECLAHEFHNLGFKRYFLVSAAHCRGITKLRDFL--------------KVEVGKVGIES 170 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 + +++ ++G+PN GKSTLIN L G + Q G TRD + Sbjct: 171 GAD----------------IKVGIIGKPNSGKSTLINYLSGNEIAIVSDQPGTTRDFIKT 214 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + E+ DTAG+R+ +R+ E +E +V ++++ + + +L+D QD Sbjct: 215 KFTRNGKVFEVVDTAGIRRRARVNEIVEYYSVNRALKVIDMVDIVFLLIDVQEKLTSQDK 274 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 +I V G +V+ +KWD+V + + L++ P + I IS GL Sbjct: 275 KIAHYVTKKGKGIVIVFSKWDLVDESKGYFEALKSHVKFFFPILNFAPIFRISVHKRIGL 334 Query: 365 DDLMVSVLEINKLWKTRITT----SYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 D L ++ + + +T LN W++ L N +++KYITQ+ ++P Sbjct: 335 DSLFKESFKLKDQLELKTSTPDLNKMLNLWIKDYHL--------NISHKIKYITQVSTNP 386 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 F++F P SY YL+N LR IPI Sbjct: 387 VKFILFANKIKNFPNSYYNYLVNNLR-KIGYKNIPI 421 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 4/121 (3%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP 264 ++ +VGRPNVGKS L NR+L R +T S G+TRD V + ++ DT G Sbjct: 6 KVLIVGRPNVGKSALFNRILDTKRSITESTYGVTRDLVEEVCKVDSFKFKLIDTGGF--- 62 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 + + + + + V+K + S+ + +++LD +D +I++ + VVL LNK Sbjct: 63 TILKDEISKIVVQKVLSSLEKVDLILLVLDIN-EILLEDYQIIERLRKYSSKVVLVLNKV 121 Query: 325 D 325 D Sbjct: 122 D 122 >gi|224534791|ref|ZP_03675363.1| ribosome-associated GTPase EngA [Borrelia spielmanii A14S] gi|224514039|gb|EEF84361.1| ribosome-associated GTPase EngA [Borrelia spielmanii A14S] Length = 433 Score = 176 bits (446), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 126/456 (27%), Positives = 217/456 (47%), Gaps = 45/456 (9%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + IVG PNVGKS LFNRL+ K ++ + G+TRD + ++ F ++DT G K Sbjct: 7 VLIVGRPNVGKSALFNRLLDTKRSITESTYGVTRDLVEEVCKVDSFKFKLIDTGGFTILK 66 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + I+K + + ++ + LIL ++D I D+ I LRK + +I+V NK+DT+ Sbjct: 67 D-EISKIVVQKVLSSLEKVDLILLVLDVNE-ILLEDYQIIEKLRKYSSKVILVLNKVDTK 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + +E ++L FK +SA H G ++L + +E+ E N +E + Sbjct: 125 DKEFLAHEFHNLGFKRYFLVSAVHCRGITKLRDFL-----------KVEVGEANIEDEVN 173 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 +++ ++G+PN GKSTLIN L G + Q G TRD + Sbjct: 174 -------------------IKVGIIGKPNSGKSTLINHLSGNEISIISDQPGTTRDFIKT 214 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 EI DTAG+R+ +R+ E +E +V ++++ + + +L+D QD Sbjct: 215 KVTRNGKVFEIIDTAGIRRRARVNEIVEYYSVNRALKVIDMVDIVFLLIDVKEELTSQDK 274 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 +I V G +++ +KWD+V + + L+++ P + I IS GL Sbjct: 275 KIAHYVVKKGKGIIIVFSKWDLVEESKGYFEALKSRVKFFFPVLNFAPIFRISVHKKIGL 334 Query: 365 DDLMVSVLEINKLWKTRITT----SYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 + + +++ + + +T LN W++ L N +++KYITQ+ ++P Sbjct: 335 NSIFKEAVKLKDQLEFKTSTPDLNKMLNLWIKDYHL--------NISHKIKYITQVSANP 386 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 F++F P SY YL+N LR IPI Sbjct: 387 VRFILFANKIKNFPNSYYNYLVNNLR-KIGYKNIPI 421 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 4/121 (3%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP 264 ++ +VGRPNVGKS L NRLL R +T S G+TRD V + ++ DT G Sbjct: 6 KVLIVGRPNVGKSALFNRLLDTKRSITESTYGVTRDLVEEVCKVDSFKFKLIDTGGF--- 62 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 + + + + + V+K + S+ + +++LD +D +I++ + V+L LNK Sbjct: 63 TILKDEISKIVVQKVLSSLEKVDLILLVLDVN-EILLEDYQIIEKLRKYSSKVILVLNKV 121 Query: 325 D 325 D Sbjct: 122 D 122 >gi|216264686|ref|ZP_03436678.1| ribosome-associated GTPase EngA [Borrelia burgdorferi 156a] gi|215981159|gb|EEC21966.1| ribosome-associated GTPase EngA [Borrelia burgdorferi 156a] Length = 433 Score = 176 bits (446), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 126/456 (27%), Positives = 214/456 (46%), Gaps = 45/456 (9%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + IVG PNVGKS LFNR++ K ++ + G+TRD + ++ F ++DT G K Sbjct: 7 VLIVGRPNVGKSALFNRILDTKRSITESTYGVTRDLVEEVCKVDSFKFKLIDTGGFTILK 66 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + I+K + + ++ + LIL ++D I D+ I LRK + +++V NK+DT+ Sbjct: 67 D-EISKIVVQKVLSSLEKVDLILLVLDINE-ILLEDYQIIERLRKYSSKVVLVLNKVDTK 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + +E ++L FK +SA H G ++L + Sbjct: 125 DKECLAHEFHNLGFKRYFLVSAAHCRGITKLRDFL------------------------- 159 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 K + G S +I ++ ++G+PN GKSTLIN L G + Q G TRD + Sbjct: 160 -KVEVGEVGIESGADI----KVGIIGKPNSGKSTLINYLSGNEIAIVSDQPGTTRDFIKT 214 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + E+ DTAG+R+ +R+ E +E +V ++++ + + +L+D QD Sbjct: 215 KFTRNGKVFEVVDTAGIRRRARVNEIVEYYSVNRALKVIDMVDIVFLLIDVQEKLTSQDK 274 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 +I V G +V+ +KWD+V + + L+++ P + I IS GL Sbjct: 275 KIAHYVTKKGKGIVIVFSKWDLVDEPKGYFEALKSRVKFFFPILNFAPIFRISVHKKIGL 334 Query: 365 DDLMVSVLEINKLWKTRITT----SYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 D L ++ + + +T LN W++ L N +++KYITQ+ ++P Sbjct: 335 DSLFKESFKLKDQLELKTSTPDLNKMLNLWIKDYHL--------NISHKIKYITQVSTNP 386 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 F++F P SY YL+N LR IPI Sbjct: 387 VKFILFANKIKNFPNSYYNYLVNNLR-KIGYKNIPI 421 Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 4/121 (3%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP 264 ++ +VGRPNVGKS L NR+L R +T S G+TRD V + ++ DT G Sbjct: 6 KVLIVGRPNVGKSALFNRILDTKRSITESTYGVTRDLVEEVCKVDSFKFKLIDTGGF--- 62 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 + + + + + V+K + S+ + +++LD +D +I++ + VVL LNK Sbjct: 63 TILKDEISKIVVQKVLSSLEKVDLILLVLDIN-EILLEDYQIIERLRKYSSKVVLVLNKV 121 Query: 325 D 325 D Sbjct: 122 D 122 >gi|317180598|dbj|BAJ58384.1| GTP-binding protein EngA [Helicobacter pylori F32] Length = 459 Score = 176 bits (446), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 129/461 (27%), Positives = 220/461 (47%), Gaps = 30/461 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 10 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA-- 67 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSNKM 121 K+ ++K++ A + LIL+++D K+ P D + F + K N +V NK+ Sbjct: 68 KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVINKI 125 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF------KIFKQKYPNHPLEMI 175 D + Y S + IS H+ G S L I +I +Q LE + Sbjct: 126 DNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAILNALNLNQIIEQDLDADILESL 185 Query: 176 ENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQS 235 ENN + +++ ++GR NVGKS+L+N L R L S + Sbjct: 186 ENN--------------ASKEETKEEEIIQVGIIGRVNVGKSSLLNALTKKERSLVSSVA 231 Query: 236 GITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDA 295 G T D + + + I DTAG+R +I +E+ ++++ +++ +++LD Sbjct: 232 GTTIDPIDETILIGDQKICFVDTAGIRHRGKIL-GIEKYALERTQKALEKSHIVLLVLDV 290 Query: 296 TIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINT 355 + PF + D +I ++L LNKWD+ + + + L I + Sbjct: 291 SAPFVELDEKISSLADKHSLGIILILNKWDIRYAPYEEIMATLKRKFRFLEYAPVITTSC 350 Query: 356 ISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQ 415 + R +D++ ++E+ + + RI TS LNS + + ++P P+ + ++ Y TQ Sbjct: 351 LKAR---HIDEIKHKIIEVYECFSKRIPTSLLNSVINQATQKHPLPSDGGKLVKVYYATQ 407 Query: 416 IQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 + PP + P + SYKRYLIN LR F+ G P+ Sbjct: 408 FATKPPQISLIMNRPKALHFSYKRYLINTLRKEFNFLGTPL 448 >gi|317177334|dbj|BAJ55123.1| GTP-binding protein EngA [Helicobacter pylori F16] Length = 461 Score = 176 bits (446), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 129/461 (27%), Positives = 220/461 (47%), Gaps = 30/461 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 10 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA-- 67 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSNKM 121 K+ ++K++ A + LIL+++D K+ P D + F + K N +V NK+ Sbjct: 68 KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPNDEDLKLFREVFKTNPNCFLVINKI 125 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF------KIFKQKYPNHPLEMI 175 D + Y S + IS H+ G S L I +I +Q LE + Sbjct: 126 DNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSTLNLNQIIEQDLDAGILESL 185 Query: 176 ENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQS 235 ENN + +++ ++GR NVGKS+L+N L R L S + Sbjct: 186 ENN--------------APKEETKEEEIIQVGIIGRVNVGKSSLLNALTKKERSLVSSMA 231 Query: 236 GITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDA 295 G T D + + + I DTAG+R +I +E+ ++++ +++ +++LD Sbjct: 232 GTTIDPIDETILIGDQKICFVDTAGIRHRGKIL-GIEKYALERTQKALEKSHIALLVLDV 290 Query: 296 TIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINT 355 + PF + D +I ++L LNKWD+ + + + L I + Sbjct: 291 SAPFVELDEKISSLADKHSLGIILILNKWDIRYAPYEEIMATLKRKFRFLEYAPVITTSC 350 Query: 356 ISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQ 415 + R +D++ ++E+ + + RI TS LNS + + ++P P+ + ++ Y TQ Sbjct: 351 LKARH---IDEIKHKIIEVYECFSKRIPTSLLNSVINQATQKHPLPSDGGKLVKVYYATQ 407 Query: 416 IQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 + PP + P + SYKRYLIN LR F+ G P+ Sbjct: 408 FATKPPQISLIMNRPKALHFSYKRYLINTLRKEFNFLGTPL 448 >gi|308062155|gb|ADO04043.1| GTP-binding protein EngA [Helicobacter pylori Cuz20] Length = 461 Score = 176 bits (446), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 129/461 (27%), Positives = 220/461 (47%), Gaps = 30/461 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 10 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA-- 67 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSNKM 121 K+ ++K++ A + LIL+++D K+ P D + F + K N +V NK+ Sbjct: 68 KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVINKI 125 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF------KIFKQKYPNHPLEMI 175 D + Y S + IS H+ G S L I +I +Q LE + Sbjct: 126 DNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSALDLNQIIEQDLDADILESL 185 Query: 176 ENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQS 235 ENN + +++ ++GR NVGKS+L+N L R L S + Sbjct: 186 ENN--------------APKEETKEEEIIQVGIIGRVNVGKSSLLNALTKKERSLVSSVA 231 Query: 236 GITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDA 295 G T D + + + I DTAG+R +I +E+ ++++ +++ +++LD Sbjct: 232 GTTIDPIDETILIGDQKICFVDTAGIRHRGKIL-GIEKYALERTQKALEKSHIALLVLDV 290 Query: 296 TIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINT 355 + PF + D +I ++L LNKWD+ + + + L I + Sbjct: 291 SAPFVELDEKISSLADKHSLGIILILNKWDIRYAPYEEIMATLKRKFRFLEYAPVITTSC 350 Query: 356 ISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQ 415 + R +D++ ++E+ + + RI TS LNS + + ++P P+ + ++ Y TQ Sbjct: 351 LKARH---IDEIKHKIIEVYECFSKRIPTSLLNSVINQATQKHPLPSDGGKLVKVYYATQ 407 Query: 416 IQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 + PP + P + SYKRYLIN LR F+ G P+ Sbjct: 408 FATKPPQISLIMNRPKALHFSYKRYLINTLRKEFNFLGTPL 448 >gi|224372205|ref|YP_002606577.1| GTP-binding protein EngA [Nautilia profundicola AmH] gi|254783161|sp|B9L7G9|DER_NAUPA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|223589108|gb|ACM92844.1| ribosome-associated GTPase EngA [Nautilia profundicola AmH] Length = 461 Score = 176 bits (445), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 136/461 (29%), Positives = 235/461 (50%), Gaps = 26/461 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIV--DTAGIAD 62 +AI+G PNVGKS+LFNR+++++ A+V G TRD + ++ + IV DT G+ + Sbjct: 4 VAILGKPNVGKSSLFNRILRERDAIVSEKAGTTRDIKKREVSLDDDLEEIVLLDTGGLEE 63 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSNK 120 ++ K E+A EA L+L+++D K P + I F L+K II+V NK Sbjct: 64 -RDELFNKVKEKALEVA-KEADLVLYMVDGKT--IPDEEEIKYFRNLQKLGKHIILVVNK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D Y+ Y L EI IS H+ G +L I K+ P P + E ++ Sbjct: 120 IDNDKMMEKVYDFYELGADEIFPISVSHNRGVGKLIERI----KKFVPKKP-KTFEVSEF 174 Query: 181 NEESPKENI-TSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITR 239 +E P E++ +E K +++A+VGR NVGKS+L+N L+G R + G T Sbjct: 175 EQEIPLEDLLVAEENEENLEELKEIKVAIVGRVNVGKSSLLNALVGEERAIVSDVDGTTI 234 Query: 240 DSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPF 299 D + + I DTAG+R+ S+I + +E+ + ++ + + + I+++DA Sbjct: 235 DPIDENIYHDGWNITFVDTAGIRRRSKIKD-IEKYALLRTEKVLEEADIAILVIDAKEGI 293 Query: 300 EKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQD---LRTKAIKNLPQIGDIYINTI 356 + D +I + + V++ NKWD +++ + + R K + P + + Sbjct: 294 VELDEKIGGLIDKHKNGVIIVANKWDENAEEFHKFRKEVYYRFKYLYFAPFLA------V 347 Query: 357 SGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPT-IFNRYNRLKYITQ 415 S +TG +D L ++ + K + RI T+ LN W+++ +++ PT I + ++ Y TQ Sbjct: 348 SAKTGRNIDKLKDEIIRVYKNYSKRIPTATLNKWIEEATIRHHLPTDIGGKEVKIFYATQ 407 Query: 416 IQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 ++ PP+ + NK+ SY+RYL+N LR G PI Sbjct: 408 YKTKPPTIALIMN-RNKLHFSYRRYLVNFLRKKEDFEGTPI 447 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 70/125 (56%), Gaps = 8/125 (6%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD--SVSISWNWKNHPIEIFDTAGM 261 +++A++G+PNVGKS+L NR+L + ++G TRD +S + I + DT G+ Sbjct: 2 IKVAILGKPNVGKSSLFNRILRERDAIVSEKAGTTRDIKKREVSLDDDLEEIVLLDTGGL 61 Query: 262 RKPSRITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLA 320 + + L K +K+++ + + + ++D TIP ++++++ ++ G ++L Sbjct: 62 EE----RDELFNKVKEKALEVAKEADLVLYMVDGKTIP-DEEEIKYFRNLQKLGKHIILV 116 Query: 321 LNKWD 325 +NK D Sbjct: 117 VNKID 121 >gi|217032525|ref|ZP_03438016.1| hypothetical protein HPB128_180g24 [Helicobacter pylori B128] gi|298736539|ref|YP_003729065.1| GTP-binding protein [Helicobacter pylori B8] gi|216945803|gb|EEC24426.1| hypothetical protein HPB128_180g24 [Helicobacter pylori B128] gi|298355729|emb|CBI66601.1| GTP-binding protein [Helicobacter pylori B8] Length = 461 Score = 176 bits (445), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 129/461 (27%), Positives = 220/461 (47%), Gaps = 30/461 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 10 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA-- 67 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSNKM 121 K+ ++K++ A + LIL+++D K+ P D + F + K N +V NK+ Sbjct: 68 KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVINKI 125 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF------KIFKQKYPNHPLEMI 175 D + Y S + IS H+ G S L + KI +Q LE + Sbjct: 126 DNDKEKERAYAFSSFGIPKSFNISVSHNRGISALIDAVLSALDLNKIIEQDLDADILESL 185 Query: 176 ENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQS 235 ENN + +++ ++GR NVGKS+L+N L R L S + Sbjct: 186 ENN--------------APKEETKEEEIIQVGIIGRVNVGKSSLLNALTKKERSLVSSVA 231 Query: 236 GITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDA 295 G T D + + + I DTAG+R +I +E+ ++++ +++ +++LD Sbjct: 232 GTTIDPIDETILIGDQKICFVDTAGIRHRGKIL-GIEKYALERTQKALEKSHIALLVLDV 290 Query: 296 TIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINT 355 + PF + D +I ++L LNKWD+ + + + L I + Sbjct: 291 SAPFVELDEKISSLADKHSLGIILILNKWDIRYAPYEEIMATLKRKFRFLEYAPVITTSC 350 Query: 356 ISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQ 415 + R +D++ ++E+ + + RI TS LNS + + ++P P+ + ++ Y TQ Sbjct: 351 LKARH---IDEIKHKIIEVYECFSKRIPTSLLNSVINQATQKHPLPSDGGKLVKVYYATQ 407 Query: 416 IQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 + PP + P + SYKRYLIN LR F+ G P+ Sbjct: 408 FATKPPQISLIMNRPKALHFSYKRYLINTLRKEFNFLGTPL 448 >gi|149194988|ref|ZP_01872081.1| GTP-binding protein EngA [Caminibacter mediatlanticus TB-2] gi|149134909|gb|EDM23392.1| GTP-binding protein EngA [Caminibacter mediatlanticus TB-2] Length = 460 Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 135/460 (29%), Positives = 229/460 (49%), Gaps = 25/460 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIV--DTAGIAD 62 +AI+G PNVGKS+ FNR+++++ A+V G TRD ++ + I+ DT G+ + Sbjct: 4 VAILGKPNVGKSSFFNRIIRERDAIVSEKAGTTRDIKKRVVSLDDDLEEIILIDTGGLEE 63 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSNK 120 + ++ ++ EA LIL+++D + P + I F L+K N P+I+V NK Sbjct: 64 --RDELFNKVKEKAFEVAKEADLILYMVDGRT--IPDEEEIKYFRKLQKLNKPLILVVNK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D Y+ YSL E+ IS H+ G +L I + +K ++IE Sbjct: 120 VDNDKLMEGVYDFYSLGADEVFPISIAHNRGVGKLIERIKEFVPKKQ-----KIIEATSI 174 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 E+ P E + S+ + K +++A+VGR NVGKS+L+N L+G R + G T D Sbjct: 175 EEDIPLEELFSDEEDENLEELKEIKVAIVGRVNVGKSSLLNALVGSERAIVSDIDGTTID 234 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 + + + + I DTAG+R+ S+I + +E+ + ++ + + + I++LDA Sbjct: 235 PIDETIYFNGYHITFVDTAGIRRRSKIKD-IEKYALMRTEKVLEEADVAILVLDAQNGIV 293 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWD---MVSDKLNLLQDLRTKAIKNLPQIGDIYINTIS 357 + D +I + +A ++ NKWD M K R K + P + +S Sbjct: 294 ELDEKIGGLIQKHKNACIIVANKWDEAKMDYKKFESEVRDRFKYLYYAPFM------VVS 347 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPT-IFNRYNRLKYITQI 416 +T +D L ++ + + RI TS LN W+++ ++ PT I R ++ Y TQ Sbjct: 348 AKTKRNIDKLKEKIVYVYGNYTKRIPTSKLNEWIKEATGRHHLPTDIRGREIKIYYATQF 407 Query: 417 QSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 PP+ + P K+ SY+RYLIN LR +G PI Sbjct: 408 AIKPPTIALIMNKP-KLHFSYERYLINFLRQKDDFTGTPI 446 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 33/131 (25%), Positives = 70/131 (53%), Gaps = 10/131 (7%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD--SVSISWNWKNHPIEIFDTAGM 261 +++A++G+PNVGKS+ NR++ + ++G TRD +S + I + DT G+ Sbjct: 2 IKVAILGKPNVGKSSFFNRIIRERDAIVSEKAGTTRDIKKRVVSLDDDLEEIILIDTGGL 61 Query: 262 RKPSRITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLA 320 + + L K +K+ + + + + ++D TIP ++++++ + ++L Sbjct: 62 EE----RDELFNKVKEKAFEVAKEADLILYMVDGRTIP-DEEEIKYFRKLQKLNKPLILV 116 Query: 321 LNKWDMVSDKL 331 +NK D +DKL Sbjct: 117 VNKVD--NDKL 125 >gi|307637526|gb|ADN79976.1| GTP-binding protein [Helicobacter pylori 908] gi|325996115|gb|ADZ51520.1| GTP-binding protein [Helicobacter pylori 2018] gi|325997711|gb|ADZ49919.1| GTP-binding protein [Helicobacter pylori 2017] Length = 462 Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 131/462 (28%), Positives = 223/462 (48%), Gaps = 31/462 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 10 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA-- 67 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSNKM 121 K+ ++K++ A + LIL+++D K+ P D + F + K N +V NK+ Sbjct: 68 KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVINKI 125 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF------KIFKQKYPNHPLEMI 175 D + Y S + IS H+ G S L + +I +Q LE + Sbjct: 126 DNDKEKERAYAFSSFGAPKSFNISVSHNRGISALIDAVLNALNLNQIMEQDLDVDILESL 185 Query: 176 EN-NKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQ 234 E N EE+ +E I +++ ++GR NVGKS+L+N L R L S Sbjct: 186 ETPNNALEETKEEEI--------------IQVGIIGRVNVGKSSLLNALTKKERSLVSSM 231 Query: 235 SGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLD 294 +G T D + + + I DTAG+R +I +E+ + ++ +++ +++LD Sbjct: 232 AGTTIDPIDETILIGDQKICFVDTAGIRHRGKIL-GIEKYALDRTKKALEKSHIALLVLD 290 Query: 295 ATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYIN 354 + PF + D +I ++L LNKWD+ + + + L I + Sbjct: 291 VSAPFVELDEKISSLADKHSLGIILILNKWDIRYAPYEEIMAALKRKFRFLEYAPVITTS 350 Query: 355 TISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYIT 414 + R +D++ ++E+ + + RI TS LNS + + ++P P+ + ++ Y T Sbjct: 351 CLKARH---IDEIKHKIIEVYECFSRRIPTSSLNSVISQATQKHPLPSDGGKLVKVYYAT 407 Query: 415 QIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 Q + PP + P + SYKRYLIN LR F+ G P+ Sbjct: 408 QFATKPPQISLIMNRPKALHFSYKRYLINTLRKEFNFLGTPL 449 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 62/209 (29%), Positives = 102/209 (48%), Gaps = 18/209 (8%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 I + I+G NVGKS+L N L KK+ ++V + G T D + +I VDTAGI Sbjct: 200 IIQVGIIGRVNVGKSSLLNALTKKERSLVSSMAGTTIDPIDETILIGDQKICFVDTAGIR 259 Query: 62 D-GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 GK I K D+T+ A+ ++H+ L ++D A D I+S K ++ II++ NK Sbjct: 260 HRGKILGIEKYALDRTKKALEKSHIALLVLDVSAPFVELDEKISSLADKHSLGIILILNK 319 Query: 121 MDTRIAQRNFYEIYS--------LDFKEIVEISAEHDLGTSEL-HSVI--FKIFKQKYPN 169 D R A + EI + L++ ++ S E+ H +I ++ F ++ P Sbjct: 320 WDIRYAP--YEEIMAALKRKFRFLEYAPVITTSCLKARHIDEIKHKIIEVYECFSRRIPT 377 Query: 170 HPLEMIENNKRNEESPKENITSEGKSSVK 198 L N+ ++ + K + S+G VK Sbjct: 378 SSL----NSVISQATQKHPLPSDGGKLVK 402 >gi|322492573|emb|CBZ27850.1| GTP-binding protein-like protein [Leishmania mexicana MHOM/GT/2001/U1103] Length = 497 Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 129/474 (27%), Positives = 223/474 (47%), Gaps = 39/474 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVK-----KKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAG 59 +AIVG N GKS+LFN L + K ++V + GITRD + A+++ + F ++DT G Sbjct: 31 VAIVGRMNSGKSSLFNLLCQDPTMPAKKSIVKDFNGITRDCVEAHAVLDDLHFTVIDTPG 90 Query: 60 IADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 + GK + ++ + A +F+ ++ +H + +L K +P ++ N Sbjct: 91 LVGGK-------LVEEAFRTVETADAAIFVTAVDEDVSAEEHDLIQYLAAKKMPTCLLVN 143 Query: 120 KMDTRIAQRN--FYEIYS-LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIE 176 KMD + +IY+ L + V SA G L +++ + Y H + +E Sbjct: 144 KMDLVPGEEEALVLDIYNRLGLGKAVPFSARKREGLDMLAALLEPL----YHIHAMRKVE 199 Query: 177 NN-------KRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRL 229 N+ +E+ E I + + +R+A+VGR N GK++L+NRL+GY R Sbjct: 200 NDWDIEDLAMGGDEAAMEEIRDRNCTG-----RYIRVAIVGRTNSGKTSLVNRLVGYERN 254 Query: 230 LTGSQSGITRDSVSISWNWKNHPIEIFDTAGM-RKPSRITESLEQKTVKKSMQSVRTCET 288 +S TRD + I+ +K +++ DTAG+ R+ R + S+ +R Sbjct: 255 RAADESNTTRDPIEIACTYKGRKLKLIDTAGLARQRYRTDREFLSRIHSLSLNEIRYAHV 314 Query: 289 TIVLLDATIPF-EKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQ 347 +V+ DAT K D+ ++ V G VL NKWD V D+ + + K + + + Sbjct: 315 VVVVFDATEGHPNKYDMSVLHKVAQEGRPFVLCANKWDAVLDQSATAEAIDFKIKRQVQE 374 Query: 348 IGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRY 407 + +S TG L LM VLE+ W R+ S L + +K + P R Sbjct: 375 VKYSNAVVVSAHTGMNLTLLMDQVLELYDTWNKRVRRSELTKFWRKLERSVIIPYHVARV 434 Query: 408 NRLKYITQIQSSPPSFLIFC---TFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 R ITQI + PP+FL+ T +++P++ + + N + F G+P+R+ Sbjct: 435 GR---ITQISTRPPTFLLQLQTKTEESQLPKALQEMMKNAITEEFGFRGVPLRL 485 Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust. Identities = 54/198 (27%), Positives = 88/198 (44%), Gaps = 35/198 (17%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQS------GITRDSVSISWNWKNHPIEIFD 257 LR+A+VGR N GKS+L N LL + + +S GITRD V + + D Sbjct: 29 LRVAIVGRMNSGKSSLFN-LLCQDPTMPAKKSIVKDFNGITRDCVEAHAVLDDLHFTVID 87 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVL--LDATIPFEKQDLRIVDSVFNTGH 315 T G+ + K V+++ ++V T + I + +D + E+ DL + + Sbjct: 88 TPGL---------VGGKLVEEAFRTVETADAAIFVTAVDEDVSAEEHDL--IQYLAAKKM 136 Query: 316 AVVLALNKWDMV-SDKLNLLQDL--RTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVL 372 L +NK D+V ++ L+ D+ R K +P S R EGL D++ ++L Sbjct: 137 PTCLLVNKMDLVPGEEEALVLDIYNRLGLGKAVP---------FSARKREGL-DMLAALL 186 Query: 373 EINKLWKTRITTSYLNSW 390 E L+ N W Sbjct: 187 E--PLYHIHAMRKVENDW 202 >gi|15611840|ref|NP_223491.1| GTP-binding protein EngA [Helicobacter pylori J99] gi|8134435|sp|Q9ZL09|DER_HELPJ RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|4155327|gb|AAD06341.1| putative [Helicobacter pylori J99] Length = 462 Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 131/462 (28%), Positives = 223/462 (48%), Gaps = 31/462 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 10 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA-- 67 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSNKM 121 K+ ++K++ A + LIL+++D K+ P D + F + K N +V NK+ Sbjct: 68 KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVINKI 125 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF------KIFKQKYPNHPLEMI 175 D + Y S + IS H+ G S L + +I +Q LE + Sbjct: 126 DNDKEKERSYAFSSFGTPKSFNISVSHNRGISALIDAVLNALNLNQIIEQDLDADILESL 185 Query: 176 EN-NKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQ 234 E N EE+ +E I +++ ++GR NVGKS+L+N L R L S Sbjct: 186 ETPNNALEETKEEEI--------------IQVGIIGRVNVGKSSLLNALTKKERSLVSSV 231 Query: 235 SGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLD 294 +G T D + + + I DTAG+R +I +E+ + ++ +++ +++LD Sbjct: 232 AGTTIDPIDETILIGDQKICFVDTAGIRHRGKIL-GIEKYALDRTQKALEKSHIALLVLD 290 Query: 295 ATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYIN 354 + PF + D +I ++L LNKWD+ + + + L I + Sbjct: 291 VSAPFVELDEKISSLADKHSLGIILILNKWDIRYAPYEEIMATLKRKFRFLEYAPVITTS 350 Query: 355 TISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYIT 414 + R +D++ ++E+ + + RI TS LNS + + ++P P+ + ++ Y T Sbjct: 351 CLKAR---HIDEIKHKIIEVYECFSKRIPTSSLNSVIFQATQKHPLPSDGGKLVKVYYAT 407 Query: 415 QIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 Q + PP + P + SYKRYLIN LR F+ G P+ Sbjct: 408 QFATKPPQISLIMNRPKALHFSYKRYLINTLRKEFNFLGTPL 449 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 46/126 (36%), Positives = 68/126 (53%), Gaps = 1/126 (0%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 I + I+G NVGKS+L N L KK+ ++V + G T D + +I VDTAGI Sbjct: 200 IIQVGIIGRVNVGKSSLLNALTKKERSLVSSVAGTTIDPIDETILIGDQKICFVDTAGIR 259 Query: 62 D-GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 GK I K D+T+ A+ ++H+ L ++D A D I+S K ++ II++ NK Sbjct: 260 HRGKILGIEKYALDRTQKALEKSHIALLVLDVSAPFVELDEKISSLADKHSLGIILILNK 319 Query: 121 MDTRIA 126 D R A Sbjct: 320 WDIRYA 325 >gi|317178805|dbj|BAJ56593.1| GTP-binding protein EngA [Helicobacter pylori F30] Length = 461 Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 129/461 (27%), Positives = 220/461 (47%), Gaps = 30/461 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 10 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA-- 67 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSNKM 121 K+ ++K++ A + LIL+++D K+ P D + F + K N +V NK+ Sbjct: 68 KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVINKI 125 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF------KIFKQKYPNHPLEMI 175 D + Y S + IS H+ G S L I +I +Q LE + Sbjct: 126 DNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAILNALNLNQIIEQDLDADILESL 185 Query: 176 ENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQS 235 ENN + +++ ++GR NVGKS+L+N L R L S + Sbjct: 186 ENN--------------ASKEELKEEEIIQVGIIGRVNVGKSSLLNALTKKERSLVSSVA 231 Query: 236 GITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDA 295 G T D + + + I DTAG+R +I +E+ ++++ +++ +++LD Sbjct: 232 GTTTDPIDETILIGDQKICFVDTAGIRHRGKIL-GIEKYALERTQKALEKSHIALLVLDV 290 Query: 296 TIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINT 355 + PF + D +I ++L LNKWD+ + + + L I + Sbjct: 291 SAPFVELDEKISSLADKHSLGIILILNKWDIRYAPYEEIMATLKRKFRFLEYAPVITTSC 350 Query: 356 ISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQ 415 + R +D++ ++E+ + + RI TS LNS + + ++P P+ + ++ Y TQ Sbjct: 351 LKVR---HIDEIKHKIIEVYECFSKRIPTSLLNSVINQATQKHPLPSDGGKLVKVYYATQ 407 Query: 416 IQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 + PP + P + SYKRYLIN LR F+ G P+ Sbjct: 408 FATKPPQISLIMNRPKALHFSYKRYLINTLRKEFNFLGTPL 448 >gi|15594853|ref|NP_212642.1| GTP-binding protein EngA [Borrelia burgdorferi B31] gi|218249913|ref|YP_002375018.1| ribosome-associated GTPase EngA [Borrelia burgdorferi ZS7] gi|221218131|ref|ZP_03589597.1| ribosome-associated GTPase EngA [Borrelia burgdorferi 72a] gi|224532891|ref|ZP_03673503.1| ribosome-associated GTPase EngA [Borrelia burgdorferi WI91-23] gi|225548736|ref|ZP_03769783.1| ribosome-associated GTPase EngA [Borrelia burgdorferi 94a] gi|225549607|ref|ZP_03770573.1| ribosome-associated GTPase EngA [Borrelia burgdorferi 118a] gi|226321818|ref|ZP_03797344.1| ribosome-associated GTPase EngA [Borrelia burgdorferi Bol26] gi|8134424|sp|O51461|DER_BORBU RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|2688422|gb|AAC66872.1| GTP-binding protein [Borrelia burgdorferi B31] gi|218165101|gb|ACK75162.1| ribosome-associated GTPase EngA [Borrelia burgdorferi ZS7] gi|221192079|gb|EEE18300.1| ribosome-associated GTPase EngA [Borrelia burgdorferi 72a] gi|224512167|gb|EEF82556.1| ribosome-associated GTPase EngA [Borrelia burgdorferi WI91-23] gi|225369884|gb|EEG99331.1| ribosome-associated GTPase EngA [Borrelia burgdorferi 118a] gi|225370766|gb|EEH00202.1| ribosome-associated GTPase EngA [Borrelia burgdorferi 94a] gi|226233007|gb|EEH31760.1| ribosome-associated GTPase EngA [Borrelia burgdorferi Bol26] Length = 433 Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 126/456 (27%), Positives = 213/456 (46%), Gaps = 45/456 (9%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + IVG PNVGKS LFNR++ K ++ + G+TRD + ++ F ++DT G K Sbjct: 7 VLIVGRPNVGKSALFNRILDTKRSITESTYGVTRDLVEEVCKVDSFKFKLIDTGGFTILK 66 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + I+K + + ++ + LIL ++D I D+ I LRK + +++V NK+DT+ Sbjct: 67 D-EISKIVVQKVLSSLEKVDLILLVLDINE-ILLEDYQIIERLRKYSSKVVLVLNKVDTK 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + +E ++L FK +SA H G ++L + Sbjct: 125 DKECLAHEFHNLGFKRYFLVSAAHCRGITKLRDFL------------------------- 159 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 K + G S +I ++ ++G+PN GKSTLIN L G + Q G TRD + Sbjct: 160 -KVEVGEVGIESGADI----KVGIIGKPNSGKSTLINYLSGNEIAIVSDQPGTTRDFIKT 214 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + E+ DTAG+R+ +R+ E +E +V ++++ + + +L+D QD Sbjct: 215 KFTRNGKVFEVVDTAGIRRRARVNEIVEYYSVNRALKVIDMVDIVFLLIDVQEKLTSQDK 274 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 +I V G +V+ +KWD+V + + L++ P + I IS GL Sbjct: 275 KIAHYVTKKGKGIVIVFSKWDLVDESKGYFEALKSHVKFFFPILNFAPIFRISVHKRIGL 334 Query: 365 DDLMVSVLEINKLWKTRITT----SYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 D L ++ + + +T LN W++ L N +++KYITQ+ ++P Sbjct: 335 DSLFKESFKLKDQLELKTSTPDLNKMLNLWIKDYHL--------NISHKIKYITQVSTNP 386 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 F++F P SY YL+N LR IPI Sbjct: 387 VKFILFANKIKNFPNSYYNYLVNNLR-KIGYKNIPI 421 Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 4/121 (3%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP 264 ++ +VGRPNVGKS L NR+L R +T S G+TRD V + ++ DT G Sbjct: 6 KVLIVGRPNVGKSALFNRILDTKRSITESTYGVTRDLVEEVCKVDSFKFKLIDTGGF--- 62 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 + + + + + V+K + S+ + +++LD +D +I++ + VVL LNK Sbjct: 63 TILKDEISKIVVQKVLSSLEKVDLILLVLDIN-EILLEDYQIIERLRKYSSKVVLVLNKV 121 Query: 325 D 325 D Sbjct: 122 D 122 >gi|317182147|dbj|BAJ59931.1| GTP-binding protein EngA [Helicobacter pylori F57] Length = 461 Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 130/461 (28%), Positives = 220/461 (47%), Gaps = 30/461 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAI+G PNVGKS+LFNRL + ++A+ + G TRD + +NG ++DT G+A Sbjct: 10 TIAILGQPNVGKSSLFNRLARARIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA-- 67 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSNKM 121 K+ ++K++ A + LIL+++D K+ P D + F + K N +V NK+ Sbjct: 68 KDALLSKEIKALNLKAAQMSDLILYIVDGKS--IPSDEDLKLFREVFKINPNCFLVINKI 125 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF------KIFKQKYPNHPLEMI 175 D + Y S + ISA H+ G S L I +I +Q LE + Sbjct: 126 DNDKEKERAYAFSSFGMPKSFNISASHNRGISALIDAILNALNLNQIIEQDLDADILESL 185 Query: 176 ENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQS 235 ENN + +++ ++GR NVGKS+L+N L R L S + Sbjct: 186 ENN--------------APKEETKEEEIIQVGIIGRVNVGKSSLLNALTKKERSLVSSVA 231 Query: 236 GITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDA 295 G T D + + + I DTAG+R +I +E+ ++++ +++ +++LD Sbjct: 232 GTTIDPIDETILVGDQKICFVDTAGIRHRGKIL-GIEKYALERTQKALEKSHIALLVLDV 290 Query: 296 TIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINT 355 + PF + D +I ++L LNKWD+ + + + L I + Sbjct: 291 SAPFVELDEKISSLADKHSLGIILILNKWDIRYAPYEEIMATLKRKFRFLEYAPVITTSC 350 Query: 356 ISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQ 415 + R +D++ ++E+ + + RI TS LNS + + ++P P+ + ++ Y TQ Sbjct: 351 LKTRH---IDEIKHKIIEVYECFSKRIPTSLLNSVINQATQKHPLPSDGGKLVKVYYATQ 407 Query: 416 IQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 + PP + P + SYKRYLIN LR F+ G P+ Sbjct: 408 FATKPPQISLIMNRPKALHFSYKRYLINTLRKEFNFLGTPL 448 >gi|261837935|gb|ACX97701.1| GTP-binding protein [Helicobacter pylori 51] Length = 461 Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 129/461 (27%), Positives = 220/461 (47%), Gaps = 30/461 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 10 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA-- 67 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSNKM 121 K+ ++K++ A + LIL+++D K+ P D + F + K N +V NK+ Sbjct: 68 KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVINKI 125 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF------KIFKQKYPNHPLEMI 175 D + Y S + IS H+ G S L I +I +Q LE + Sbjct: 126 DNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSALDLNQIIEQDLDADILESL 185 Query: 176 ENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQS 235 ENN + +++ ++GR NVGKS+L+N L R L S + Sbjct: 186 ENN--------------APKEETKEEEIIQVGIIGRVNVGKSSLLNALTKKERSLVSSVA 231 Query: 236 GITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDA 295 G T D + + + I DTAG+R +I +E+ ++++ +++ +++LD Sbjct: 232 GTTIDPIDETILIGDQKICFVDTAGIRHRGKIL-GIEKYALERTQKALEKSHIALLVLDV 290 Query: 296 TIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINT 355 + PF + D +I ++L LNKWD+ + + + L I + Sbjct: 291 SAPFVELDEKISSLADKHSLGIILILNKWDIRYAPYEEIMAALKRKFRFLEYAPVITTSC 350 Query: 356 ISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQ 415 + R +D++ ++E+ + + RI TS LNS + + ++P P+ + ++ Y TQ Sbjct: 351 LKTRH---IDEIKHKIIEVYECFSKRIPTSLLNSVINQATQKHPLPSDGGKLVKVYYATQ 407 Query: 416 IQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 + PP + P + SYKRYLIN LR F+ G P+ Sbjct: 408 FATKPPQISLIMNRPKALHFSYKRYLINTLRKEFNFLGTPL 448 >gi|219685247|ref|ZP_03540067.1| ribosome-associated GTPase EngA [Borrelia garinii Far04] gi|219673343|gb|EED30362.1| ribosome-associated GTPase EngA [Borrelia garinii Far04] Length = 433 Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 122/446 (27%), Positives = 208/446 (46%), Gaps = 44/446 (9%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + IVG PNVGKS LFNR++ K ++ + G+TRD + + F ++DT G K Sbjct: 7 VLIVGRPNVGKSALFNRILDTKRSITESTYGVTRDLVEEVCKVGSFNFKLIDTGGFTILK 66 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + I+K + + ++ + LIL ++D I D+ I LRK +I+V NK+DT+ Sbjct: 67 D-EISKIVVQKVLSSLEQVDLILLVLDVNE-ILLEDYEIIERLRKYTSKVILVLNKVDTK 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + ++ ++L FK +SA H G ++L + E Sbjct: 125 DKEFLAHKFHNLGFKRYFLVSALHRRGITKLRDFL---------------------KSEV 163 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 + NI E +++ ++G+PN GKSTLIN L G + Q G TRD + Sbjct: 164 GRANIEDEVN---------IKVGIIGKPNSGKSTLINYLSGNEISIVSDQPGTTRDFIKT 214 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 EI DTAG+R+ +R+ E +E ++ ++++ + + +L+D QD Sbjct: 215 KLTRNGKVFEIIDTAGIRRRARVNEVVEYYSINRALKVIDMVDIVFLLIDVKEELTSQDK 274 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 +I V G +++ +KWD++ + + L+ + P + I IS GL Sbjct: 275 KIAHYVTKKGKGIIIVFSKWDLLEESKGYFETLKGRVKFFFPVLNFAPIFRISVHKKMGL 334 Query: 365 DDLMVSVLEINKLWKTRITT----SYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 D L L++ + + +T LN W++ L N +++KYITQ+ ++P Sbjct: 335 DSLFKEALKLKDQLELKTSTPDLNKMLNLWIKDYHL--------NISHKIKYITQVSTNP 386 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLR 446 F++F P SY YL+N LR Sbjct: 387 VKFILFANKIKNFPNSYYNYLVNNLR 412 Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 63/121 (52%), Gaps = 4/121 (3%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP 264 ++ +VGRPNVGKS L NR+L R +T S G+TRD V + ++ DT G Sbjct: 6 KVLIVGRPNVGKSALFNRILDTKRSITESTYGVTRDLVEEVCKVGSFNFKLIDTGGF--- 62 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 + + + + + V+K + S+ + +++LD +D I++ + V+L LNK Sbjct: 63 TILKDEISKIVVQKVLSSLEQVDLILLVLDVN-EILLEDYEIIERLRKYTSKVILVLNKV 121 Query: 325 D 325 D Sbjct: 122 D 122 >gi|66815479|ref|XP_641756.1| hypothetical protein DDB_G0279259 [Dictyostelium discoideum AX4] gi|60469791|gb|EAL67778.1| hypothetical protein DDB_G0279259 [Dictyostelium discoideum AX4] Length = 841 Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 114/336 (33%), Positives = 183/336 (54%), Gaps = 36/336 (10%) Query: 5 IAIVGAPNVGKSTLFNRLVK-KKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAG-IAD 62 IAI+G PNVGKST+FNR+++ ++ A+V PG TRDR YG+ + G F +VDT G I + Sbjct: 155 IAIIGKPNVGKSTIFNRIIEGQRRALVEEIPGTTRDRYYGEGFLYGREFILVDTGGLIGE 214 Query: 63 GKNCSIAKQ--MNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKK----NIPIII 116 K Q + DQ E+A+ EA ILF++D K+G+T D + LR K PI I Sbjct: 215 SKEDKDQFQGVIQDQAEIAMEEADAILFVLDYKSGLTSIDKELARMLRSKRQKLGKPIYI 274 Query: 117 VSNKMD-TRIAQRNFYE----IYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHP 171 NK D + +F E I L F E + SA H +HS +F++ ++P+ Sbjct: 275 GVNKADNVSMRGEDFEEMKTQITRLGFGEPIPFSAHH---GDNVHS-MFELILSQFPHMD 330 Query: 172 LEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLT 231 L + ++ EE K P+RI++VG+PN GKS+L+N+++ R + Sbjct: 331 LSL----EKLEEDLKPG--------------PIRISIVGQPNAGKSSLLNKIIEEERSIV 372 Query: 232 GSQSGITRDSVSISWNWKN-HPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTI 290 G T D V ++ W++ H + + DTAG+R+ S LE+ +V +++++ Sbjct: 373 SDIPGTTHDPVDCNFLWRDTHELSLIDTAGIRRRSTHKIGLEKSSVLWALKAIEKSHVVF 432 Query: 291 VLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 +++DATI +QDL+I V ++++ +NKWD+ Sbjct: 433 IVIDATIGITEQDLKIASFVVENRKSMIIIVNKWDL 468 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 39/150 (26%), Positives = 71/150 (47%), Gaps = 6/150 (4%) Query: 197 VKNISKPLRIAVVGRPNVGKSTLINRLL-GYNRLLTGSQSGITRDSVSISWNWKNHPIEI 255 +K IS IA++G+PNVGKST+ NR++ G R L G TRD + Sbjct: 146 MKPISNKPVIAIIGKPNVGKSTIFNRIIEGQRRALVEEIPGTTRDRYYGEGFLYGREFIL 205 Query: 256 FDTAGMRKPSRITESLEQKTVKKSMQ-SVRTCETTIVLLD---ATIPFEKQDLRIVDSVF 311 DT G+ S+ + Q ++ + ++ + + +LD +K+ R++ S Sbjct: 206 VDTGGLIGESKEDKDQFQGVIQDQAEIAMEEADAILFVLDYKSGLTSIDKELARMLRSKR 265 Query: 312 NT-GHAVVLALNKWDMVSDKLNLLQDLRTK 340 G + + +NK D VS + ++++T+ Sbjct: 266 QKLGKPIYIGVNKADNVSMRGEDFEEMKTQ 295 Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust. Identities = 15/56 (26%), Positives = 31/56 (55%) Query: 409 RLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 +LK+ Q + PP+F+ + P+ + S R+L+ +R + G PI + F+ ++ Sbjct: 765 KLKFAQQARGYPPTFVFWVNHPDNVEPSVVRFLLRSIRDYYPFVGTPIYVQFRKNR 820 >gi|223888990|ref|ZP_03623581.1| ribosome-associated GTPase EngA [Borrelia burgdorferi 64b] gi|223885806|gb|EEF56905.1| ribosome-associated GTPase EngA [Borrelia burgdorferi 64b] Length = 433 Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 126/456 (27%), Positives = 213/456 (46%), Gaps = 45/456 (9%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + IVG PNVGKS LFNR++ K ++ + G+TRD + ++ F ++DT G K Sbjct: 7 VLIVGRPNVGKSALFNRILDTKRSITESAYGVTRDLVEEVCKVDSFKFKLIDTGGFTILK 66 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + I+K + + ++ + LIL ++D I D+ I LRK + +++V NK+DT+ Sbjct: 67 D-EISKIVVQKVLSSLEKVDLILLVLDINE-ILLEDYQIIERLRKYSSKVVLVLNKVDTK 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + +E ++L FK +SA H G ++L + Sbjct: 125 DKECLAHEFHNLGFKRYFLVSAAHCRGITKLRDFL------------------------- 159 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 K + G S +I ++ ++G+PN GKSTLIN L G + Q G TRD + Sbjct: 160 -KVEVGEVGIESGADI----KVGIIGKPNSGKSTLINYLSGNEIAIVSDQPGTTRDFIKT 214 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + E+ DTAG+R+ +R+ E +E +V ++++ + + +L+D QD Sbjct: 215 KFTRNGKVFEVVDTAGIRRRARVNEIVEYYSVNRALKVIDMVDIVFLLIDVQEKLTSQDK 274 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 +I V G +V+ +KWD+V + + L++ P + I IS GL Sbjct: 275 KIAHYVTKKGKGIVIVFSKWDLVDESKGYFEALKSHVKFFFPILNFAPIFRISVHKRIGL 334 Query: 365 DDLMVSVLEINKLWKTRITT----SYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 D L ++ + + +T LN W++ L N +++KYITQ+ ++P Sbjct: 335 DFLFKESFKLKDQLELKTSTPDLNKMLNLWIKDYHL--------NISHKIKYITQVSTNP 386 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 F++F P SY YL+N LR IPI Sbjct: 387 VKFILFANKIKNFPNSYYNYLVNNLR-KIGYKNIPI 421 Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 4/121 (3%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP 264 ++ +VGRPNVGKS L NR+L R +T S G+TRD V + ++ DT G Sbjct: 6 KVLIVGRPNVGKSALFNRILDTKRSITESAYGVTRDLVEEVCKVDSFKFKLIDTGGF--- 62 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 + + + + + V+K + S+ + +++LD +D +I++ + VVL LNK Sbjct: 63 TILKDEISKIVVQKVLSSLEKVDLILLVLDIN-EILLEDYQIIERLRKYSSKVVLVLNKV 121 Query: 325 D 325 D Sbjct: 122 D 122 >gi|213028788|ref|ZP_03343235.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 365 Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 107/347 (30%), Positives = 177/347 (51%), Gaps = 18/347 (5%) Query: 132 EIYSLDFKEIVEISAEHDLGT-SELHSVIFKIFKQKYPNHPLE-------MIENNKRNEE 183 + YSL EI I+A H G S L V+ P ++ E + EE Sbjct: 6 DFYSLGLGEIYPIAASHGRGVLSLLEHVLLPWMDDVAPQEEVDEDAEYWAQFEAEQNGEE 65 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 +P+++ + S P+++A+VGRPNVGKSTL NR+LG R++ G TRDS+ Sbjct: 66 APEDDFDPQ--------SLPIKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIY 117 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 I + DTAG+RK +IT+++E+ +V K++Q++ ++++DA QD Sbjct: 118 IPMERDEREYVLIDTAGVRKRGKITDAVEKFSVIKTLQAIEDANVVLLVIDAREGISDQD 177 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 L ++ + N+G ++V+ +NKWD +S ++ + ++ L I ++ IS G G Sbjct: 178 LSLLGFILNSGRSLVIVVNKWDGLSQEVK--EQVKETLDFRLGFIDFARVHFISALHGSG 235 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 + +L SV E R++T+ L + + PP + R +LKY +PP Sbjct: 236 VGNLFESVREAYDSSTRRVSTAMLTRIMTMAVEDHQPPLVRGRRVKLKYAHTGGYNPPIV 295 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +I +P+SYKRYL+N R + + G PIR+ F+ +NPY K Sbjct: 296 VIHGNQVKDLPDSYKRYLMNYFRKSLEVMGTPIRIQFKEGENPYANK 342 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 52/168 (30%), Positives = 91/168 (54%), Gaps = 9/168 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD-G 63 +AIVG PNVGKSTL NR++ ++ VV + PG TRD +Y + + ++DTAG+ G Sbjct: 80 LAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDEREYVLIDTAGVRKRG 139 Query: 64 KNCSIAKQMND-QTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 K ++ + +T AI +A+++L +ID++ GI+ D ++ F+ ++IV NK D Sbjct: 140 KITDAVEKFSVIKTLQAIEDANVVLLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWD 199 Query: 123 -------TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 ++ + + + +DF + ISA H G L + + + Sbjct: 200 GLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLFESVREAY 247 >gi|282908791|ref|ZP_06316609.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp. aureus WW2703/97] gi|282327055|gb|EFB57350.1| ribosome-associated GTPase EngA [Staphylococcus aureus subsp. aureus WW2703/97] Length = 348 Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 101/371 (27%), Positives = 175/371 (47%), Gaps = 28/371 (7%) Query: 89 LIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQRNFYEIYSLDFKEIVEISAEH 148 +++ + G+T D + L K P+++ NK+D + + Y+ YSL F E IS H Sbjct: 1 MVNVREGLTQSDEMVAQILYKSKKPVVLAVNKVDNMEMRTDVYDFYSLGFGEPYPISGSH 60 Query: 149 DLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAV 208 LG +L + F ++ +R+++ Sbjct: 61 GLGLGDLLDAVVSHFGEE----------------------------EEDPYDEDTIRLSI 92 Query: 209 VGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRIT 268 +GRPNVGKS+L+N +LG +R++ + +G TRD++ +++ + DTAGMRK ++ Sbjct: 93 IGRPNVGKSSLVNAILGEDRVIVSNVAGTTRDAIDTEYSYDGQDYVLIDTAGMRKKGKVY 152 Query: 269 ESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVS 328 ES E+ +V ++++++ +V++DA +QD R+ G AVV+ +NKWD V Sbjct: 153 ESTEKYSVLRALKAIERSNVVLVVIDAEQGIIEQDKRVAGYAHEQGKAVVIVVNKWDTVE 212 Query: 329 DKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLN 388 ++ + K + I +S + L L + E ++ K R+ +S LN Sbjct: 213 KDSKTMKKFEDEVRKEFQFLDYAQIAFVSAKERTRLRTLFPYINEASENHKKRVQSSTLN 272 Query: 389 SWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRIN 448 + NP PT R + Y TQ+ PP+F++F + SYKRYL N++R Sbjct: 273 EVVTDAISMNPTPTDKGRRLNVFYATQVAIEPPTFVVFVNDVELMHFSYKRYLENQIRAA 332 Query: 449 FSLSGIPIRMC 459 F G PI + Sbjct: 333 FGFEGTPIHII 343 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 69/121 (57%), Gaps = 2/121 (1%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI-ADG 63 ++I+G PNVGKS+L N ++ + +V N G TRD + + +G + ++DTAG+ G Sbjct: 90 LSIIGRPNVGKSSLVNAILGEDRVIVSNVAGTTRDAIDTEYSYDGQDYVLIDTAGMRKKG 149 Query: 64 KNCSIAKQMNDQTEL-AINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 K ++ + L AI ++++L +ID++ GI D + + ++ ++IV NK D Sbjct: 150 KVYESTEKYSVLRALKAIERSNVVLVVIDAEQGIIEQDKRVAGYAHEQGKAVVIVVNKWD 209 Query: 123 T 123 T Sbjct: 210 T 210 >gi|219684291|ref|ZP_03539235.1| ribosome-associated GTPase EngA [Borrelia garinii PBr] gi|219672280|gb|EED29333.1| ribosome-associated GTPase EngA [Borrelia garinii PBr] Length = 433 Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 122/446 (27%), Positives = 208/446 (46%), Gaps = 44/446 (9%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + IVG PNVGKS LFNR++ K ++ + G+TRD + + F ++DT G K Sbjct: 7 VLIVGRPNVGKSALFNRILDTKRSITESTYGVTRDLVEEVCKVGSFNFKLIDTGGFTILK 66 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + I+K + + ++ + LIL ++D I D+ + LRK +I+V NK+DT+ Sbjct: 67 D-EISKIVVQKVLSSLEQVDLILLVLDVNE-ILLEDYEVIERLRKYTSKVILVLNKVDTK 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + ++ ++L FK +SA H G ++L + E Sbjct: 125 DKEFLAHKFHNLGFKRYFLVSALHRRGITKLRDFL---------------------KSEV 163 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 + NI E +++ ++G+PN GKSTLIN L G + Q G TRD + Sbjct: 164 GRANIEDEVN---------IKVGIIGKPNSGKSTLINYLSGNEISIVSDQPGTTRDFIKT 214 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 EI DTAG+R+ +R+ E +E +V ++++ + + +L+D QD Sbjct: 215 KLTRNGKVFEIIDTAGIRRRARVNEVVEYYSVNRALKVIDMVDIVFLLIDVKEELTSQDK 274 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 +I V G +++ +KWD++ + + L+ + P + I IS GL Sbjct: 275 KIAHYVTKKGKGIIIVFSKWDLLEESKGYFETLKGRVKFFFPVLNFAPIFRISVHKKIGL 334 Query: 365 DDLMVSVLEINKLWKTRITT----SYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 D L L++ + + +T LN W++ L N +++KYITQ+ ++P Sbjct: 335 DSLFKEALKLKDQLELKTSTPDLNKMLNLWIKDYHL--------NISHKIKYITQVSTNP 386 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLR 446 F++F P SY YL+N LR Sbjct: 387 VKFILFANKIKNFPNSYYNYLVNNLR 412 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 63/121 (52%), Gaps = 4/121 (3%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP 264 ++ +VGRPNVGKS L NR+L R +T S G+TRD V + ++ DT G Sbjct: 6 KVLIVGRPNVGKSALFNRILDTKRSITESTYGVTRDLVEEVCKVGSFNFKLIDTGGF--- 62 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 + + + + + V+K + S+ + +++LD +D +++ + V+L LNK Sbjct: 63 TILKDEISKIVVQKVLSSLEQVDLILLVLDVN-EILLEDYEVIERLRKYTSKVILVLNKV 121 Query: 325 D 325 D Sbjct: 122 D 122 >gi|188527319|ref|YP_001910006.1| GTP-binding protein EngA [Helicobacter pylori Shi470] gi|238691915|sp|B2USZ4|DER_HELPS RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|188143559|gb|ACD47976.1| GTP-binding protein EngA [Helicobacter pylori Shi470] Length = 461 Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 129/461 (27%), Positives = 221/461 (47%), Gaps = 30/461 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 10 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA-- 67 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSNKM 121 K+ ++K++ A + LIL+++D K+ P D + F + K N +V NK+ Sbjct: 68 KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVINKI 125 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF------KIFKQKYPNHPLEMI 175 D + Y S + IS H+ G S L I +I +Q LE + Sbjct: 126 DNDKEKERAYAFSSFGMPKSFNISVSHNRGISTLIDAILSALDLNQIIEQDLDADILESL 185 Query: 176 ENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQS 235 ENN + +++ ++GR NVGKS+L+N L R L S + Sbjct: 186 ENN--------------APKEEIKEEEIIQVGIIGRVNVGKSSLLNALTKKERSLVSSVA 231 Query: 236 GITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDA 295 G T D + + + I DTAG+R +I +E+ ++++ +++ +++LD Sbjct: 232 GTTIDPIDETILIGDQKICFVDTAGIRHRGKIL-GIEKYALERTQKALEKSHIALLVLDV 290 Query: 296 TIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINT 355 + PF + D +I ++L LNKWD+ + +++ + + I T Sbjct: 291 SAPFVELDEKISSLADKHSLGIILILNKWDI---RYAPYEEIMATLKRKFRFLEYAPIIT 347 Query: 356 ISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQ 415 S +D++ ++E+ + + RI TS LNS + + ++P P+ + ++ Y TQ Sbjct: 348 TSCLKTHHIDEIKHKIIEVYECFSKRIPTSLLNSVINQATQKHPLPSDGGKLVKVYYATQ 407 Query: 416 IQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 + PP + P + SYKRYLIN LR F+ G P+ Sbjct: 408 FATKPPQISLIMNRPKALHFSYKRYLINTLRKEFNFLGTPL 448 >gi|312148299|gb|ADQ30958.1| ribosome-associated GTPase EngA [Borrelia burgdorferi JD1] Length = 433 Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 126/456 (27%), Positives = 213/456 (46%), Gaps = 45/456 (9%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + IVG PNVGKS LFNR++ K ++ + G+TRD + ++ F ++DT G K Sbjct: 7 VLIVGRPNVGKSALFNRILDIKRSITESTYGVTRDLVEEVCKVDSFKFKLIDTGGFTILK 66 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + I+K + + ++ + LIL ++D I D+ I LRK + +++V NK+DT+ Sbjct: 67 D-EISKIVVQKVLSSLEKVDLILLVLDINE-ILLEDYQIIERLRKYSSKVVLVLNKVDTK 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + +E ++L FK +SA H G ++L + Sbjct: 125 DKECLAHEFHNLGFKRYFLVSAAHCRGITKLRDFL------------------------- 159 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 K + G S +I ++ ++G+PN GKSTLIN L G + Q G TRD + Sbjct: 160 -KVEVGEVGIESGADI----KVGIIGKPNSGKSTLINYLSGNEIAIVSDQPGTTRDFIKT 214 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + E+ DTAG+R+ +R+ E +E +V ++++ + + +L+D QD Sbjct: 215 KFTRNGKVFEVVDTAGIRRRARVNEIVEYYSVNRALKVIDMVDIVFLLIDVQEKLTSQDK 274 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 +I V G +V+ +KWD+V + + L++ P + I IS GL Sbjct: 275 KIAHYVTKKGKGIVIVFSKWDLVDEPKGYFEALKSHVKFFFPILNFAPIFRISVHKRIGL 334 Query: 365 DDLMVSVLEINKLWKTRITT----SYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 D L ++ + + +T LN W++ L N +++KYITQ+ ++P Sbjct: 335 DSLFKESFKLKDQLELKTSTPDLNKMLNLWIKDYHL--------NISHKIKYITQVSTNP 386 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 F++F P SY YL+N LR IPI Sbjct: 387 VKFILFANKIKNFPNSYYNYLVNNLR-KIGYKNIPI 421 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 4/121 (3%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP 264 ++ +VGRPNVGKS L NR+L R +T S G+TRD V + ++ DT G Sbjct: 6 KVLIVGRPNVGKSALFNRILDIKRSITESTYGVTRDLVEEVCKVDSFKFKLIDTGGF--- 62 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 + + + + + V+K + S+ + +++LD +D +I++ + VVL LNK Sbjct: 63 TILKDEISKIVVQKVLSSLEKVDLILLVLDIN-EILLEDYQIIERLRKYSSKVVLVLNKV 121 Query: 325 D 325 D Sbjct: 122 D 122 >gi|217034119|ref|ZP_03439539.1| hypothetical protein HP9810_868g12 [Helicobacter pylori 98-10] gi|216943403|gb|EEC22859.1| hypothetical protein HP9810_868g12 [Helicobacter pylori 98-10] Length = 461 Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 129/461 (27%), Positives = 219/461 (47%), Gaps = 30/461 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 10 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA-- 67 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSNKM 121 K+ ++K++ A + LIL+++D K+ P D + F + K N +V NK+ Sbjct: 68 KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVINKI 125 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK------IFKQKYPNHPLEMI 175 D + Y S + IS H+ G S L I I +Q LE + Sbjct: 126 DNDKEKERAYAFSSFGMPKSFNISVSHNRGISTLIDAILSALNLNPIIEQDLDADILESL 185 Query: 176 ENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQS 235 ENN + +++ ++GR NVGKS+L+N L R L S + Sbjct: 186 ENN--------------APKEENKEEEIIQVGIIGRVNVGKSSLLNALTKKERSLVSSMA 231 Query: 236 GITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDA 295 G T D + + + I DTAG+R +I +E+ ++++ +++ +++LD Sbjct: 232 GTTIDPIDETILIGDQKICFVDTAGIRHRGKIL-GIEKYALERTQKALEKSHIVLLVLDV 290 Query: 296 TIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINT 355 + PF + D +I ++L LNKWD+ + + + L I + Sbjct: 291 SAPFVELDEKISSLADKHSLGIILILNKWDIRYAPYEEIMATLKRKFRFLEYAPVITASC 350 Query: 356 ISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQ 415 + R +D++ ++E+ + + RI TS LNS + + ++P P+ + ++ Y TQ Sbjct: 351 LKMRH---IDEIKHKIIEVYECFSKRIPTSLLNSVINQATQKHPLPSDGGKLVKVYYATQ 407 Query: 416 IQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 + PP + P + SYKRYLIN LR F+ G P+ Sbjct: 408 FATKPPQISLIMNRPKALHFSYKRYLINTLRKEFNFLGTPL 448 >gi|315586500|gb|ADU40881.1| ribosome-associated GTPase EngA [Helicobacter pylori 35A] Length = 461 Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 129/461 (27%), Positives = 220/461 (47%), Gaps = 30/461 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 10 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA-- 67 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSNKM 121 K+ ++K++ A + LIL+++D K+ P D + F + K N +V NK+ Sbjct: 68 KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVINKI 125 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF------KIFKQKYPNHPLEMI 175 D + Y S + IS H+ G S L I +I +Q LE + Sbjct: 126 DNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSALNLNQIIEQDLDADILESL 185 Query: 176 ENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQS 235 ENN + +++ ++GR NVGKS+L+N L R L S + Sbjct: 186 ENN--------------APKEETKEEEIIQVGIIGRVNVGKSSLLNALTKKERSLVSSVA 231 Query: 236 GITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDA 295 G T D + + + I DTAG+R +I +E+ ++++ +++ +++LD Sbjct: 232 GTTIDPIDETILIGDQKICFVDTAGIRHRGKIL-GIEKYALERTQKALEKSHIALLVLDV 290 Query: 296 TIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINT 355 + PF + D +I ++L LNKWD+ + + + L I + Sbjct: 291 SAPFVELDEKISSLADKHSLGIILILNKWDIRYAPYEEIMATLKRKFRFLEYAPVITTSC 350 Query: 356 ISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQ 415 + R +D++ ++E+ + + RI TS LNS + + ++P P+ + ++ Y TQ Sbjct: 351 LKTR---HIDEIKHKIIEVYECFSKRIPTSLLNSVINQATQKHPLPSDGGKLVKVYYATQ 407 Query: 416 IQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 + PP + P + SYKRYLIN LR F+ G P+ Sbjct: 408 FATKPPQISLIMNRPKALHFSYKRYLINTLRKEFNFLGTPL 448 >gi|15645453|ref|NP_207627.1| GTP-binding protein EngA [Helicobacter pylori 26695] gi|3915379|sp|O25505|DER_HELPY RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|2313967|gb|AAD07883.1| GTP-binding protein homologue (yphC) [Helicobacter pylori 26695] Length = 458 Score = 174 bits (440), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 133/466 (28%), Positives = 225/466 (48%), Gaps = 43/466 (9%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 10 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA-- 67 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSNKM 121 K+ ++K++ A + LIL+++D K+ P D + F + K N +V NK+ Sbjct: 68 KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVINKI 125 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF------KIFKQKYPNHPLEMI 175 D + Y S + IS H+ G S L + +I +Q LE + Sbjct: 126 DNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLSALDLNQIIEQDLDADILESL 185 Query: 176 E--NNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGS 233 E NN EE +++ ++GR NVGKS+L+N L R L S Sbjct: 186 ETPNNALEEEI-------------------IQVGIIGRVNVGKSSLLNALTKKERSLVSS 226 Query: 234 QSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLL 293 +G T D + + + I DTAG+R +I +E+ ++++ +++ +++L Sbjct: 227 VAGTTIDPIDETILIGDQKICFVDTAGIRHRGKIL-GIEKYALERTQKALEKSHIALLVL 285 Query: 294 DATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM-VSDKLNLLQDLRTKA--IKNLPQIGD 350 D + PF + D +I ++L LNKWD+ + ++ L+ K ++ P I Sbjct: 286 DVSAPFVELDEKISSLADKHSLGIILVLNKWDIRYAPYEEIIATLKRKFRFLEYAPVI-- 343 Query: 351 IYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRL 410 T S +D++ ++E+ + + RI TS LNS + + ++P P+ + ++ Sbjct: 344 ----TTSCLKARHIDEIKHKIIEVYECFSKRIPTSLLNSVINQATQKHPLPSDGGKLVKV 399 Query: 411 KYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 Y TQ + PP + P + SYKRYLIN LR F+ G P+ Sbjct: 400 YYATQFATKPPQISLIMNRPKALHFSYKRYLINTLRKEFNFLGTPL 445 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 63/209 (30%), Positives = 102/209 (48%), Gaps = 18/209 (8%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 I + I+G NVGKS+L N L KK+ ++V + G T D + +I VDTAGI Sbjct: 196 IIQVGIIGRVNVGKSSLLNALTKKERSLVSSVAGTTIDPIDETILIGDQKICFVDTAGIR 255 Query: 62 D-GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 GK I K ++T+ A+ ++H+ L ++D A D I+S K ++ II+V NK Sbjct: 256 HRGKILGIEKYALERTQKALEKSHIALLVLDVSAPFVELDEKISSLADKHSLGIILVLNK 315 Query: 121 MDTRIAQRNFYEIYS--------LDFKEIVEISAEHDLGTSEL-HSVI--FKIFKQKYPN 169 D R A + EI + L++ ++ S E+ H +I ++ F ++ P Sbjct: 316 WDIRYAP--YEEIIATLKRKFRFLEYAPVITTSCLKARHIDEIKHKIIEVYECFSKRIPT 373 Query: 170 HPLEMIENNKRNEESPKENITSEGKSSVK 198 L N+ N+ + K + S+G VK Sbjct: 374 SLL----NSVINQATQKHPLPSDGGKLVK 398 >gi|328869018|gb|EGG17396.1| GTP-binding protein engA [Dictyostelium fasciculatum] Length = 770 Score = 174 bits (440), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 106/350 (30%), Positives = 186/350 (53%), Gaps = 38/350 (10%) Query: 5 IAIVGAPNVGKSTLFNRLVK-KKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI--- 60 IA+VG PNVGKSTLFNR+V+ ++ A+V + PG TRDR YG+AI+ G F +VDT G+ Sbjct: 120 IALVGKPNVGKSTLFNRIVESQRQALVEDIPGTTRDRYYGEAIVYGKQFQVVDTGGMVGD 179 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLR---KKNIPIIIV 117 + + ++ + Q +A++EA +I+F++D + GIT D + LR +K +++V Sbjct: 180 STTQQDQFSQMIKTQATIAMDEADVIVFVVDYRTGITQVDRDLARMLRNRQQKGQHVLVV 239 Query: 118 SNKMDTRIAQRNFYE-----IYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPL 172 +NK D+ + F + E +S+ H G +L I K+ P+ PL Sbjct: 240 ANKADSHMMIEGFETDMKTTLTRFGLGEPFPMSSIHGHGVLDLLERITKLL----PDMPL 295 Query: 173 EMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTG 232 E+ + P ++ ++I++VG+PN GKS+L+NR++ R + Sbjct: 296 EL--------DDP-------------SLPGAIKISIVGQPNAGKSSLLNRIIEQERSIVS 334 Query: 233 SQSGITRDSVSISWNWKN-HPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIV 291 G T D V W++ H + + DTAG+R+ + LE+ +V +M+++ + Sbjct: 335 DVPGTTHDPVDCHLVWRDKHDLTLIDTAGIRRRATHRVGLEKSSVLWAMKAIERSHVVLF 394 Query: 292 LLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKA 341 ++D+T+ +QDL+I + +V++ +NKWD+ + Q R +A Sbjct: 395 VIDSTVGLTEQDLKIAGFITEQNKSVIILVNKWDLYTKNKRTAQKERDQA 444 Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust. Identities = 48/187 (25%), Positives = 85/187 (45%), Gaps = 11/187 (5%) Query: 194 KSSVKNI-SKPLRIAVVGRPNVGKSTLINRLLGYNR-LLTGSQSGITRDSVSISWNWKNH 251 ++ VK+I KPL IA+VG+PNVGKSTL NR++ R L G TRD Sbjct: 108 RAKVKSIKGKPL-IALVGKPNVGKSTLFNRIVESQRQALVEDIPGTTRDRYYGEAIVYGK 166 Query: 252 PIEIFDTAGMRKPSRITESLEQKTVK-KSMQSVRTCETTIVLLDATIPFEKQD---LRIV 307 ++ DT GM S + + +K ++ ++ + + ++D + D R++ Sbjct: 167 QFQVVDTGGMVGDSTTQQDQFSQMIKTQATIAMDEADVIVFVVDYRTGITQVDRDLARML 226 Query: 308 DSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDL 367 + G V++ NK +D +++ T L + G +S G G+ DL Sbjct: 227 RNRQQKGQHVLVVANK----ADSHMMIEGFETDMKTTLTRFGLGEPFPMSSIHGHGVLDL 282 Query: 368 MVSVLEI 374 + + ++ Sbjct: 283 LERITKL 289 >gi|268680372|ref|YP_003304803.1| ribosome-associated GTPase EngA [Sulfurospirillum deleyianum DSM 6946] gi|268618403|gb|ACZ12768.1| ribosome-associated GTPase EngA [Sulfurospirillum deleyianum DSM 6946] Length = 477 Score = 173 bits (439), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 129/462 (27%), Positives = 223/462 (48%), Gaps = 19/462 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAI+G PNVGKS+LFNR+ K ++A+ + G TRD Q I I+DT G+ K Sbjct: 4 IAIIGLPNVGKSSLFNRIAKARIAITSDFSGTTRDIKSHQVYITEKPCLILDTGGL--DK 61 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + + ++D + A +A +IL ++D K + + I L+ N PI +V NK+D Sbjct: 62 STELFENVHDMSMQASKKADVILMVVDGKLLPSEEEKKIFYALQALNKPIALVINKIDND 121 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 +E + + +S H+ G S L I E ++ + Sbjct: 122 KEMERAWEFSEFGAEHVFPLSVSHNRGVSALLEWIGSYLPAPEGALVASEEEADEETIDE 181 Query: 185 PKENITSEGKSSVKNISKPLR-------IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGI 237 + + S +++ P+ +A++GR NVGKS+L+N L+G R + + +G Sbjct: 182 EDDVWDEDKISEEQSLEAPIEEENPNINVAIIGRVNVGKSSLLNALVGKQRAVVSNVAGT 241 Query: 238 TRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATI 297 T D V S + I DTAG+R+ +I E +E+ + ++ + + +++LDA+ Sbjct: 242 TIDPVDESIEYNEKVINFVDTAGLRRRGKI-EGIEKFALMRTKEMLERANIALLVLDASE 300 Query: 298 PFEKQDLRIVDSVFNTGHAVVLALNKWDMVSD---KLNLLQDLRTKAIKNLPQIGDIYIN 354 PF + D RI V A ++ LNKWD D K+ R K + P I Sbjct: 301 PFLELDERIAGLVEENNLACIIVLNKWDEAMDDFEKVTAEVRHRFKFLSYAPLI------ 354 Query: 355 TISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYIT 414 T+S ++ + + + +L + + + I T LN +++ +++ P+ ++ ++ + T Sbjct: 355 TVSAKSKQRVSKIKDMILSVYENYSQHIPTRQLNEVIREATIRHQIPSDHSKVVKIYFAT 414 Query: 415 QIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 Q Q+ PP + P + SYKRYL N+LR F+L G PI Sbjct: 415 QYQTKPPRIALVMNKPRSLHFSYKRYLANKLRDVFNLEGSPI 456 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 62/121 (51%), Gaps = 4/121 (3%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP 264 +IA++G PNVGKS+L NR+ +T SG TRD S P I DT G+ K Sbjct: 3 KIAIIGLPNVGKSSLFNRIAKARIAITSDFSGTTRDIKSHQVYITEKPCLILDTGGLDKS 62 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 + + E++ SMQ+ + + ++++D + +++ +I ++ + L +NK Sbjct: 63 TELFENVHD----MSMQASKKADVILMVVDGKLLPSEEEKKIFYALQALNKPIALVINKI 118 Query: 325 D 325 D Sbjct: 119 D 119 >gi|51598763|ref|YP_072951.1| GTP-binding protein EngA [Borrelia garinii PBi] gi|81825627|sp|Q661B2|DER_BORGA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|51573334|gb|AAU07359.1| GTP-binding protein [Borrelia garinii PBi] Length = 433 Score = 173 bits (439), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 126/456 (27%), Positives = 211/456 (46%), Gaps = 45/456 (9%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + IVG PNVGKS LFNR++ K ++ + G+TRD + + F ++DT G K Sbjct: 7 VLIVGRPNVGKSALFNRILDAKRSITESTYGVTRDLVEEVCKVGSFNFKLIDTGGFTILK 66 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + I+K + + ++ + LIL ++D I D+ I LRK + +I+V NK+DT+ Sbjct: 67 D-EISKIVVQKVLSSLEKVDLILLVLDVNE-ILLEDYEIIERLRKYSSKVILVLNKVDTK 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + ++ ++L FK +SA H G ++L + E Sbjct: 125 DKEFLAHKFHNLGFKRYFLVSALHRRGITKLRDFL---------------------KVEV 163 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 + NI E +++ ++G+PN GKSTLIN L G + Q G TRD + Sbjct: 164 GRVNIEEEVN---------IKVGIIGKPNSGKSTLINYLSGNEISIVSDQPGTTRDFIKT 214 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 EI DTAG+R+ +R+ E +E +V ++++ + + +L+D QD Sbjct: 215 KLTRNGKVFEIIDTAGIRRRARVNEVVEYYSVNRALKVIDIVDIVFLLIDVEEELTSQDK 274 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 +I V G +++ +KWD++ + + L+ + P + I IS GL Sbjct: 275 KIAHYVTKKGKGIIIVFSKWDLLEESKGYFETLKGRVKFFFPVLNFAPIFRISVYKKIGL 334 Query: 365 DDLMVSVLEINKLWKTRITT----SYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 D L L++ + + T LN W++ L N +++KYITQ+ ++P Sbjct: 335 DSLFKEALKVKDQLELKTNTPDLNKMLNLWIKDYHL--------NISHKIKYITQVSTNP 386 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 F++F P SY YL+N LR IPI Sbjct: 387 VKFILFANKIKNFPNSYYNYLVNNLR-KIGYKNIPI 421 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 63/121 (52%), Gaps = 4/121 (3%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP 264 ++ +VGRPNVGKS L NR+L R +T S G+TRD V + ++ DT G Sbjct: 6 KVLIVGRPNVGKSALFNRILDAKRSITESTYGVTRDLVEEVCKVGSFNFKLIDTGGF--- 62 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 + + + + + V+K + S+ + +++LD +D I++ + V+L LNK Sbjct: 63 TILKDEISKIVVQKVLSSLEKVDLILLVLDVN-EILLEDYEIIERLRKYSSKVILVLNKV 121 Query: 325 D 325 D Sbjct: 122 D 122 >gi|224533510|ref|ZP_03674099.1| ribosome-associated GTPase EngA [Borrelia burgdorferi CA-11.2a] gi|224513183|gb|EEF83545.1| ribosome-associated GTPase EngA [Borrelia burgdorferi CA-11.2a] Length = 433 Score = 173 bits (438), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 125/456 (27%), Positives = 212/456 (46%), Gaps = 45/456 (9%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + IVG PNVGKS LFNR++ K ++ + G+TRD + ++ F ++DT G K Sbjct: 7 VLIVGRPNVGKSALFNRILDTKRSITESTYGVTRDLVEEVCKVDSFKFKLIDTGGFTILK 66 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + I+K + + ++ + LIL ++D I D+ I LR + +++V NK+DT+ Sbjct: 67 D-EISKIVVQKVLSSLEKVDLILLVLDINE-ILLEDYQIIERLRTYSSKVVLVLNKVDTK 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + +E ++L FK +SA H G ++L + Sbjct: 125 DKECLAHEFHNLGFKRYFLVSAAHCRGITKLRDFL------------------------- 159 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 K + G S +I ++ ++G+PN GKSTLIN L G + Q G TRD + Sbjct: 160 -KVEVGEVGIESGADI----KVGIIGKPNSGKSTLINYLSGNEIAIVSDQPGTTRDFIKT 214 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + E+ DTAG+R+ +R+ E +E +V ++++ + + +L+D QD Sbjct: 215 KFTRNGKVFEVVDTAGIRRRARVNEIVEYYSVNRALKVIDMVDIVFLLIDVQEKLTSQDK 274 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 +I V G +V+ +KWD+V + + L++ P + I IS GL Sbjct: 275 KIAHYVTKKGKGIVIVFSKWDLVDESKGYFEALKSHVKFFFPILNFAPIFRISVHKRIGL 334 Query: 365 DDLMVSVLEINKLWKTRITT----SYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 D L ++ + + +T LN W++ L N +++KYITQ+ ++P Sbjct: 335 DSLFKESFKLKDQLELKTSTPDLNKMLNLWIKDYHL--------NISHKIKYITQVSTNP 386 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 F++F P SY YL+N LR IPI Sbjct: 387 VKFILFANKIKNFPNSYYNYLVNNLR-KIGYKNIPI 421 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 4/121 (3%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP 264 ++ +VGRPNVGKS L NR+L R +T S G+TRD V + ++ DT G Sbjct: 6 KVLIVGRPNVGKSALFNRILDTKRSITESTYGVTRDLVEEVCKVDSFKFKLIDTGGF--- 62 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 + + + + + V+K + S+ + +++LD +D +I++ + VVL LNK Sbjct: 63 TILKDEISKIVVQKVLSSLEKVDLILLVLDIN-EILLEDYQIIERLRTYSSKVVLVLNKV 121 Query: 325 D 325 D Sbjct: 122 D 122 >gi|195941645|ref|ZP_03087027.1| GTP-binding protein EngA [Borrelia burgdorferi 80a] gi|312149483|gb|ADQ29554.1| ribosome-associated GTPase EngA [Borrelia burgdorferi N40] Length = 433 Score = 172 bits (437), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 125/456 (27%), Positives = 212/456 (46%), Gaps = 45/456 (9%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + IVG PNVGKS LFNR++ K ++ + G+TRD + ++ F ++DT G K Sbjct: 7 VLIVGRPNVGKSALFNRILDTKRSITESTYGVTRDLVEEVCKVDSFKFKLIDTGGFTILK 66 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + I+K + + ++ + LIL ++D I D+ I LR + +++V NK+DT+ Sbjct: 67 D-EISKIVVQKVLSSLEKVDLILLVLDINE-ILLEDYQIIERLRTYSSKVVLVLNKVDTK 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + +E ++L FK +SA H G ++L + Sbjct: 125 DKECLAHEFHNLGFKRYFLVSAAHCRGITKLRDFL------------------------- 159 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 K + G S +I ++ ++G+PN GKSTLIN L G + Q G TRD + Sbjct: 160 -KVEVGEVGIESGADI----KVGIIGKPNSGKSTLINYLSGNEIAIVSDQPGTTRDFIKT 214 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 + E+ DTAG+R+ +R+ E +E +V ++++ + + +L+D QD Sbjct: 215 KFARNGKVFEVVDTAGIRRRARVNEIVEYYSVNRALKVIDMVDIVFLLIDVQEKLTSQDK 274 Query: 305 RIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 +I V G +V+ +KWD+V + + L++ P + I IS GL Sbjct: 275 KIAHYVTKKGKGIVIVFSKWDLVDESKGYFEALKSHVKFFFPILNFAPIFRISVHKRIGL 334 Query: 365 DDLMVSVLEINKLWKTRITT----SYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 D L ++ + + +T LN W++ L N +++KYITQ+ ++P Sbjct: 335 DSLFKESFKLKDQLELKTSTPDLNKMLNLWIKDYHL--------NISHKIKYITQVSTNP 386 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 F++F P SY YL+N LR IPI Sbjct: 387 VKFILFANKIKNFPNSYYNYLVNNLR-KIGYKNIPI 421 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 4/121 (3%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP 264 ++ +VGRPNVGKS L NR+L R +T S G+TRD V + ++ DT G Sbjct: 6 KVLIVGRPNVGKSALFNRILDTKRSITESTYGVTRDLVEEVCKVDSFKFKLIDTGGF--- 62 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 + + + + + V+K + S+ + +++LD +D +I++ + VVL LNK Sbjct: 63 TILKDEISKIVVQKVLSSLEKVDLILLVLDIN-EILLEDYQIIERLRTYSSKVVLVLNKV 121 Query: 325 D 325 D Sbjct: 122 D 122 >gi|154339145|ref|XP_001562264.1| GTP-binding protein-like protein [Leishmania braziliensis MHOM/BR/75/M2904] gi|134062847|emb|CAM39292.1| putative ras-like small GTPases [Leishmania braziliensis MHOM/BR/75/M2904] Length = 511 Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 133/471 (28%), Positives = 222/471 (47%), Gaps = 33/471 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVK-----KKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAG 59 +AIVG N GKS+LFN L + K +V + GITRD + A++N + F I+DT G Sbjct: 45 VAIVGRMNSGKSSLFNLLCQDPTMPAKKNIVKDFNGITRDCVEAHAVLNDLHFTIIDTPG 104 Query: 60 IADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 + GK + ++ + A +F+ ++ +H + +L K +P ++ N Sbjct: 105 LVGGK-------LVEEAFRTVETADAAIFVTAVDEDVSTEEHDLIQYLAAKKLPACLLVN 157 Query: 120 KMDTRIAQRN--FYEIYS-LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIE 176 KMD + ++Y+ L + SA G L +++ + Y H + +E Sbjct: 158 KMDLVPEEDEALVLDVYNHLGLGNAIPFSARKREGLDMLSALLEPL----YHIHAMRKVE 213 Query: 177 NNKRNEE---SPKENITSEGKSSVKNISKP-LRIAVVGRPNVGKSTLINRLLGYNRLLTG 232 N+ E+ S E E + +N ++ +R+A+VGR N GK++L+NRLLGY R Sbjct: 214 NDWDIEDLAMSGDEAAMEEIRD--RNCTEQYIRVAIVGRTNSGKTSLVNRLLGYERNRAA 271 Query: 233 SQSGITRDSVSISWNWKNHPIEIFDTAGM-RKPSRITESLEQKTVKKSMQSVRTCETTIV 291 + TRD + I +K +++ DTAG+ R+ R S++ +R IV Sbjct: 272 DATNTTRDPIEIPCTYKGKKLKLIDTAGLARQRYRTDREFLSCIHNLSLKEIRYAHVVIV 331 Query: 292 LLDATIPF-EKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGD 350 + DAT K D+ I+ +V G VL NKWD V D+ + + K + + ++ Sbjct: 332 VFDATEGHPNKYDMSILHTVAQEGRPFVLCANKWDAVLDQSATAEAIDFKIKRQVQEVKY 391 Query: 351 IYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRL 410 +S TG L LM VLE+ W R+ S L + +K + P R R Sbjct: 392 SSAVVVSAHTGMNLTLLMDQVLELYDTWNKRVRRSELTKFWRKLEKSVIIPYHVARVGR- 450 Query: 411 KYITQIQSSPPSFLIFCTF---PNKIPESYKRYLINRLRINFSLSGIPIRM 458 ITQI + PP+FL+ N++P++ + + N + F G+P+R+ Sbjct: 451 --ITQISTRPPTFLLQLQTKKEENQLPKALQEMMKNAITEEFGFRGVPLRI 499 Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust. Identities = 52/194 (26%), Positives = 84/194 (43%), Gaps = 27/194 (13%) Query: 204 LRIAVVGRPNVGKSTLINRL-----LGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDT 258 LR+A+VGR N GKS+L N L + + + +GITRD V + I DT Sbjct: 43 LRVAIVGRMNSGKSSLFNLLCQDPTMPAKKNIVKDFNGITRDCVEAHAVLNDLHFTIIDT 102 Query: 259 AGMRKPSRITESLEQKTVKKSMQSVRTCETTIVL--LDATIPFEKQDLRIVDSVFNTGHA 316 G+ + K V+++ ++V T + I + +D + E+ DL + + Sbjct: 103 PGL---------VGGKLVEEAFRTVETADAAIFVTAVDEDVSTEEHDL--IQYLAAKKLP 151 Query: 317 VVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 L +NK D+V ++ L + N +G+ S R EGLD M+S L + Sbjct: 152 ACLLVNKMDLVPEEDEAL----VLDVYNHLGLGNAI--PFSARKREGLD--MLSAL-LEP 202 Query: 377 LWKTRITTSYLNSW 390 L+ N W Sbjct: 203 LYHIHAMRKVENDW 216 >gi|281206920|gb|EFA81104.1| GTP-binding protein engA [Polysphondylium pallidum PN500] Length = 795 Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 112/336 (33%), Positives = 176/336 (52%), Gaps = 37/336 (11%) Query: 5 IAIVGAPNVGKSTLFNRLVKK-KMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI--- 60 IAI+G PNVGKSTLFNR+V+ + A+V N PG TRDR Y A + G F +VDT G+ Sbjct: 114 IAIIGKPNVGKSTLFNRVVQGGRQALVENIPGTTRDRYYSDAFLYGRQFQLVDTGGLVGE 173 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLR---KKNIPIIIV 117 A + + +Q +A++EA I+FL+D+K GIT D + LR K + + Sbjct: 174 ALAHTDRFSTAIKEQATVAMDEADAIIFLLDAKTGITSVDKELARMLRNRASKGQKVFLG 233 Query: 118 SNKMDTR--IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 NK D I + E+ L F E SA H G L + K PL Sbjct: 234 INKADNDQLIDKLPRDELVRLGFGEPYAFSAIHGGGVLGLFDSVLKSL-------PLP-- 284 Query: 176 ENNKRNE--ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGS 233 K NE P++N + ++I++VG+PN GKS+L+N+++G R + Sbjct: 285 ---KDNELLGDPQQNTS-------------IKISIVGQPNAGKSSLLNQIIGEERAIVSD 328 Query: 234 QSGITRDSVSISWNWK-NHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVL 292 +G T D V + W+ NH + + DTAG+R+ S LE+ +V +M+++ + +++ Sbjct: 329 VAGTTHDPVDCQFLWRENHDLTLIDTAGIRRRSTHKVGLEKSSVLWAMKAIERSQVVLMV 388 Query: 293 LDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVS 328 +DAT+ QDL+I + +V++ +NKWD+ + Sbjct: 389 IDATVGITDQDLKIAGFILENNKSVMILVNKWDLYT 424 Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust. Identities = 19/56 (33%), Positives = 34/56 (60%) Query: 409 RLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 ++K+ +Q + PPSF+ F P K+ S+ R+L+N +R + G PI + F+ +K Sbjct: 731 KIKFASQSKGFPPSFVFFVNDPEKVQPSFIRFLLNSIRETYPFVGTPINIFFRRNK 786 >gi|146089409|ref|XP_001470375.1| GTP-binding protein-like protein [Leishmania infantum] gi|134070408|emb|CAM68746.1| putative ras-like small GTPases [Leishmania infantum JPCM5] Length = 497 Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 129/474 (27%), Positives = 220/474 (46%), Gaps = 39/474 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVK-----KKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAG 59 +AIVG N GKS+LFN L + K +V + GITRD + A ++ + F ++DT G Sbjct: 31 VAIVGRMNSGKSSLFNLLCQDPTMPAKKNIVKDFNGITRDCVEAHAALDNLHFTVIDTPG 90 Query: 60 IADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 + GK + ++ + A +F+ ++ +H + +L K +P ++ N Sbjct: 91 LIGGK-------LVEEAFRTVETADAAIFVTAVDEDVSAEEHDLIQYLAAKKMPACLLVN 143 Query: 120 KMDTRIAQRN--FYEIYS-LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIE 176 KMD + ++Y+ L + V SA G L +++ + Y H + +E Sbjct: 144 KMDLVPEEEESLVLDVYNRLGLGKAVPFSARKREGLDALSALLEPL----YHIHAMRKVE 199 Query: 177 NN-------KRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRL 229 N+ +E+ E I + + +R+A+VGR N GK++L+NRL+GY R Sbjct: 200 NDWDIEDLAMAGDEAAMEEIRDRNCTD-----RYIRVAIVGRTNSGKTSLVNRLVGYERN 254 Query: 230 LTGSQSGITRDSVSISWNWKNHPIEIFDTAGM-RKPSRITESLEQKTVKKSMQSVRTCET 288 +S TRD + I+ +K +++ DTAG+ R+ R + S+ +R Sbjct: 255 RAADESNTTRDPIEIACTYKGRKLKLIDTAGLARQRYRTDREFLSRIHSLSLNEIRYAHV 314 Query: 289 TIVLLDATIPF-EKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQ 347 IV+ DAT K D+ I+ V G VL NKWD V D+ + + K + + + Sbjct: 315 VIVVFDATEGHPNKYDMSILHKVAQEGRPFVLCANKWDAVLDQSATAEAIDFKIKRQVQE 374 Query: 348 IGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRY 407 + +S TG L LM VLE+ W R+ S L + +K + P R Sbjct: 375 VKYSNAVVVSAHTGMNLTLLMDQVLELYDTWNKRVRRSELTKFWRKLEKSVIIPYHVARV 434 Query: 408 NRLKYITQIQSSPPSFLIFCTF---PNKIPESYKRYLINRLRINFSLSGIPIRM 458 R ITQI + PP+FL+ +++P++ + + N + F G+P+R+ Sbjct: 435 GR---ITQISTRPPTFLLQLQTKKEESQLPKALQEMMKNAITEEFGFRGVPLRL 485 Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust. Identities = 49/174 (28%), Positives = 79/174 (45%), Gaps = 30/174 (17%) Query: 204 LRIAVVGRPNVGKSTLINRL-----LGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDT 258 LR+A+VGR N GKS+L N L + + + +GITRD V N + DT Sbjct: 29 LRVAIVGRMNSGKSSLFNLLCQDPTMPAKKNIVKDFNGITRDCVEAHAALDNLHFTVIDT 88 Query: 259 AGMRKPSRITESLEQKTVKKSMQSVRTCETTIVL--LDATIPFEKQDLRIVDSVFNTGHA 316 G+ + K V+++ ++V T + I + +D + E+ DL + + Sbjct: 89 PGL---------IGGKLVEEAFRTVETADAAIFVTAVDEDVSAEEHDL--IQYLAAKKMP 137 Query: 317 VVLALNKWDMV-SDKLNLLQDL--RTKAIKNLPQIGDIYINTISGRTGEGLDDL 367 L +NK D+V ++ +L+ D+ R K +P S R EGLD L Sbjct: 138 ACLLVNKMDLVPEEEESLVLDVYNRLGLGKAVP---------FSARKREGLDAL 182 >gi|317014244|gb|ADU81680.1| GTP-binding protein Der [Helicobacter pylori Gambia94/24] Length = 463 Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 127/461 (27%), Positives = 220/461 (47%), Gaps = 28/461 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 10 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA-- 67 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSNKM 121 K+ ++K++ A + LIL+++D K+ P D I F + K N +V NK+ Sbjct: 68 KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVINKI 125 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF------KIFKQKYPNHPLEMI 175 D + Y S + IS H+ G S L + +I +Q LE + Sbjct: 126 DNDKEKERAYAFSSFGVPKSFNISVSHNRGISALIDAVLNALNLNQIIEQDLDADILESL 185 Query: 176 ENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQS 235 E ++ + +++ ++GR NVGKS+L+N L R L S + Sbjct: 186 E------------ASNNASKEENKEEEIIQVGIIGRVNVGKSSLLNALTKKERSLVSSVA 233 Query: 236 GITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDA 295 G T D + + + I DTAG+R +I +E+ ++++ +++ +++LD Sbjct: 234 GTTIDPIDETILIGDQKICFVDTAGIRHRGKIL-GIEKYALERTQKALEKSHIALLVLDV 292 Query: 296 TIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINT 355 + PF + D +I ++L LNKWD+ + + + L I + Sbjct: 293 SAPFVELDEKISSLADKHSLGIILILNKWDIRYAPYEEIMATLKRKFRFLEYAPVITTSC 352 Query: 356 ISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQ 415 + R +D++ ++E+ + + RI TS LNS + + ++P P+ + ++ Y TQ Sbjct: 353 LKARH---MDEIKHKIIEVYECFSKRIPTSSLNSVISQATQKHPLPSDGGKLVKVYYATQ 409 Query: 416 IQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 + PP + P + SYKRYLIN LR F+ G P+ Sbjct: 410 FATKPPQISLVMNRPKALHFSYKRYLINTLRKEFNFLGTPL 450 >gi|125524978|gb|EAY73092.1| hypothetical protein OsI_00968 [Oryza sativa Indica Group] Length = 627 Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 135/512 (26%), Positives = 236/512 (46%), Gaps = 76/512 (14%) Query: 21 RLVKKKMAVVGNHPG--ITRDRLYGQAIINGVIFNIVDTAGIADGKNC-SIAKQMNDQTE 77 R ++++ A+V N PG +TRD G A + + F ++D+AG+ SI + D T Sbjct: 14 RFIRRREALVYNTPGDHVTRDIREGVAKLGDLRFRVLDSAGLETAATSGSILARTADMTG 73 Query: 78 LAINEAHLILFLIDSKAGITPYDHAITSFLRK--KNIPIIIVSNKMDT----RIAQRNFY 131 + + +FLID + G+ P D + +LR+ I I+ NK ++ + Sbjct: 74 NVLARSQFAIFLIDVRDGLQPLDLEVGQWLRRHASGIHTIVAMNKSESLDEHGVLTAAAG 133 Query: 132 EIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEESPKENITS 191 E + L F + V ISAE LG +EL+ + +F+ + + NN N++ P + Sbjct: 134 EAHRLGFGDPVAISAETGLGMAELYETLRPLFEDY-----MFQLTNNGLNQDDPTSEAET 188 Query: 192 EGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNH 251 E ++ PL++A+VGRPNVGKSTL+N LL R+L G ++G+TRDS+ + + N Sbjct: 189 EAHEGDES-KLPLQLAIVGRPNVGKSTLLNTLLQEQRVLVGPEAGLTRDSIRTQFQFDNR 247 Query: 252 PIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDAT-IPFEKQDLR----- 305 + + DTAG + S + +V +S +++ ++LD I K + Sbjct: 248 TVYLVDTAGWMERSGKEKGPASLSVVQSRKNLMRAHIVALVLDGEKIAKSKSSMNHPEVL 307 Query: 306 IVDSVFNTGHAVVLALNKWDMVSDKLNLLQ---DLRTKAIKN-LPQIGDIYINTISGRTG 361 I G +V+ +NK D++ + L D K I+ +PQ+ I + +S G Sbjct: 308 IARQAIEEGRGLVVIVNKMDLLRENRPLFDKVIDAVPKEIQTVIPQVTGIPVVFMSALEG 367 Query: 362 EGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTI------------------ 403 G +M V++ + W R++TS LN WL+K L I Sbjct: 368 RGRIAVMRQVIDTYEKWCLRLSTSRLNRWLRKIDLSQGSSQIHPSQGRSTCRVECWIHSE 427 Query: 404 -------------------------FNRYN--------RLKYITQIQSSPPSFLIFCTFP 430 +R++ ++KY TQ+++ PP+F+ F + Sbjct: 428 SAGKERRKRRRACARKKKRHQGGAVMSRHSWKDSATQPKVKYFTQVKARPPTFVAFMSGK 487 Query: 431 NKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 ++ ++ R+L L+ +F + GIPIR+ +S Sbjct: 488 VQLSDTDIRFLTKSLKEDFDIGGIPIRVVQRS 519 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/136 (30%), Positives = 69/136 (50%), Gaps = 8/136 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD-- 62 +AIVG PNVGKSTL N L++++ +VG G+TRD + Q + +VDTAG + Sbjct: 202 LAIVGRPNVGKSTLLNTLLQEQRVLVGPEAGLTRDSIRTQFQFDNRTVYLVDTAGWMERS 261 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLID------SKAGITPYDHAITSFLRKKNIPIII 116 GK A Q+ + AH++ ++D SK+ + + I ++ +++ Sbjct: 262 GKEKGPASLSVVQSRKNLMRAHIVALVLDGEKIAKSKSSMNHPEVLIARQAIEEGRGLVV 321 Query: 117 VSNKMDTRIAQRNFYE 132 + NKMD R ++ Sbjct: 322 IVNKMDLLRENRPLFD 337 >gi|322499842|emb|CBZ34915.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 497 Score = 170 bits (430), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 129/474 (27%), Positives = 219/474 (46%), Gaps = 39/474 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVK-----KKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAG 59 +AIVG N GKS+LFN L + K +V + GITRD + A ++ + F ++DT G Sbjct: 31 VAIVGRMNSGKSSLFNLLCQDPTMPAKKNIVKDFNGITRDCVEAHAALDDLHFTVIDTPG 90 Query: 60 IADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 + GK + ++ + A +F+ ++ +H + +L K +P ++ N Sbjct: 91 LIGGK-------LVEEAFRTVETADAAIFVTAVDEDVSAEEHDLIQYLAAKKMPACLLVN 143 Query: 120 KMDTRIAQRN--FYEIYS-LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIE 176 KMD + + Y+ L + V SA G L +++ + Y H + +E Sbjct: 144 KMDLVPEEEESLVLDAYNRLGLGKAVPFSARKREGLDALSALLEPL----YHIHAMRKVE 199 Query: 177 NN-------KRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRL 229 N+ +E+ E I + + +R+A+VGR N GK++L+NRL+GY R Sbjct: 200 NDWDIEDLAMAGDEAAMEEIRDRNCTD-----RYIRVAIVGRTNSGKTSLVNRLVGYERN 254 Query: 230 LTGSQSGITRDSVSISWNWKNHPIEIFDTAGM-RKPSRITESLEQKTVKKSMQSVRTCET 288 +S TRD + I+ +K +++ DTAG+ R+ R + S+ +R Sbjct: 255 RAADESNTTRDPIEIACTYKGRKLKLIDTAGLARQRYRTDREFLSRIHSLSLNEIRYAHV 314 Query: 289 TIVLLDATIPF-EKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQ 347 IV+ DAT K D+ I+ V G VL NKWD V D+ + + K + + + Sbjct: 315 VIVVFDATEGHPNKYDMSILHKVAQEGRPFVLCANKWDAVLDQSATAEAIDFKIKRQVQE 374 Query: 348 IGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRY 407 + +S TG L LM VLE+ W R+ S L + +K + P R Sbjct: 375 VKYSNAVVVSAHTGMNLTLLMDQVLELYDTWNKRVRRSELTKFWRKLEKSVIIPYHVARV 434 Query: 408 NRLKYITQIQSSPPSFLIFCTF---PNKIPESYKRYLINRLRINFSLSGIPIRM 458 R ITQI + PP+FL+ +++P++ + + N + F G+P+R+ Sbjct: 435 GR---ITQISTRPPTFLLQLQTKKEESQLPKALQEMMKNAITEEFGFRGVPLRL 485 Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust. Identities = 45/171 (26%), Positives = 75/171 (43%), Gaps = 24/171 (14%) Query: 204 LRIAVVGRPNVGKSTLINRL-----LGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDT 258 LR+A+VGR N GKS+L N L + + + +GITRD V + + DT Sbjct: 29 LRVAIVGRMNSGKSSLFNLLCQDPTMPAKKNIVKDFNGITRDCVEAHAALDDLHFTVIDT 88 Query: 259 AGMRKPSRITESLEQKTVKKSMQSVRTCETTIVL--LDATIPFEKQDLRIVDSVFNTGHA 316 G+ + K V+++ ++V T + I + +D + E+ DL + + Sbjct: 89 PGL---------IGGKLVEEAFRTVETADAAIFVTAVDEDVSAEEHDL--IQYLAAKKMP 137 Query: 317 VVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDL 367 L +NK D+V ++ L + ++G S R EGLD L Sbjct: 138 ACLLVNKMDLVPEEEESL------VLDAYNRLGLGKAVPFSARKREGLDAL 182 >gi|157870969|ref|XP_001684034.1| GTP-binding protein-like protein [Leishmania major] gi|68127102|emb|CAJ04581.1| putative ras-like small GTPases [Leishmania major strain Friedlin] Length = 497 Score = 170 bits (430), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 131/474 (27%), Positives = 220/474 (46%), Gaps = 39/474 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVK-----KKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAG 59 +AIVG N GKS+LFN L + K +V + GITRD + A ++ + F ++DT G Sbjct: 31 VAIVGRMNSGKSSLFNLLCEDPTMPAKKNIVKDFNGITRDCVEAHAALDDLHFTVIDTPG 90 Query: 60 IADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 + GK A + + + AI F+ ++ +H + +L K +P ++ N Sbjct: 91 LLGGKLVEEAFRTVETADAAI-------FVTAVDEDVSAEEHDLIQYLAAKKMPTCLLVN 143 Query: 120 KMDTRIAQRN--FYEIYS-LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIE 176 KMD + ++Y+ L + V SA G L +++ + Y H + +E Sbjct: 144 KMDLVPEEEEALVLDVYNRLGLGKAVPFSARKREGLDMLSALLEPL----YHIHAMRKVE 199 Query: 177 NN-------KRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRL 229 N+ +E+ E I + + +R+A+VGR N GK++L+NRL+GY R Sbjct: 200 NDWDIEDLAMAGDEAAMEEIRDRNCTD-----RYIRVAIVGRTNSGKTSLVNRLVGYERN 254 Query: 230 LTGSQSGITRDSVSISWNWKNHPIEIFDTAGM-RKPSRITESLEQKTVKKSMQSVRTCET 288 +S TRD + I+ +K +++ DTAG+ R+ R + S+ +R Sbjct: 255 RAADESNTTRDPIEIACMYKGRKLKLIDTAGLARQRYRTDREFLSRIHSLSLNEIRYAHV 314 Query: 289 TIVLLDATIPF-EKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQ 347 IV+ DAT K D+ I+ V G VL NKWD V D+ + + K + + + Sbjct: 315 VIVVFDATEGHPNKYDMSILHKVAQEGRPFVLCANKWDAVLDQSATAEAIDFKIKRQVQE 374 Query: 348 IGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRY 407 + +S TG L LM VLE+ W R+ S L + +K + P R Sbjct: 375 VKYSNAVVVSAHTGMNLTLLMDQVLELYDTWNKRVRRSELTKFWRKLEKSVIIPYHVARV 434 Query: 408 NRLKYITQIQSSPPSFLIFCTF---PNKIPESYKRYLINRLRINFSLSGIPIRM 458 R ITQI + PP+FL+ +++P++ + + N + F G+P+R+ Sbjct: 435 GR---ITQISTRPPTFLLQLQTKKEESQLPKALQEMMKNAITEEFGFRGVPLRL 485 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 54/197 (27%), Positives = 86/197 (43%), Gaps = 33/197 (16%) Query: 204 LRIAVVGRPNVGKSTLINRL-----LGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDT 258 LR+A+VGR N GKS+L N L + + + +GITRD V + + DT Sbjct: 29 LRVAIVGRMNSGKSSLFNLLCEDPTMPAKKNIVKDFNGITRDCVEAHAALDDLHFTVIDT 88 Query: 259 AGMRKPSRITESLEQKTVKKSMQSVRTCETTIVL--LDATIPFEKQDLRIVDSVFNTGHA 316 G+ L K V+++ ++V T + I + +D + E+ DL + + Sbjct: 89 PGL---------LGGKLVEEAFRTVETADAAIFVTAVDEDVSAEEHDL--IQYLAAKKMP 137 Query: 317 VVLALNKWDMV-SDKLNLLQDL--RTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 L +NK D+V ++ L+ D+ R K +P S R EGLD M+S L Sbjct: 138 TCLLVNKMDLVPEEEEALVLDVYNRLGLGKAVP---------FSARKREGLD--MLSAL- 185 Query: 374 INKLWKTRITTSYLNSW 390 + L+ N W Sbjct: 186 LEPLYHIHAMRKVENDW 202 >gi|145332365|ref|NP_001078139.1| emb2738 (embryo defective 2738); GTP binding [Arabidopsis thaliana] gi|332641626|gb|AEE75147.1| GTP-binding protein [Arabidopsis thaliana] Length = 587 Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 129/457 (28%), Positives = 223/457 (48%), Gaps = 69/457 (15%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 ++ +AIVG PNVGKS LFNRLV + A+V + PG+TRDRLYG++ F +VDT G+ Sbjct: 157 LLQRVAIVGRPNVGKSALFNRLVGENRAIVVDEPGVTRDRLYGRSYWGDQEFVVVDTGGV 216 Query: 61 A--------------------------DGKNCSIAKQ---MNDQTELAINEAHLILFLID 91 + +IA+ + Q A++E+ +I+F++D Sbjct: 217 MTVSKSPSGVMEELNVSTTIGMEGIPLSSREAAIARMPSMIEKQATAAVDESAVIIFVVD 276 Query: 92 SKAGITPYDHAITSFLRK--KNIPIIIVSNKMDT-RIAQRNFYEIYSLDFKEIVEISAEH 148 +AG + D I +LRK + II+ NK ++ R E +SL F I ISA Sbjct: 277 GQAGPSGADVEIADWLRKYYSHKYIILAVNKCESPRKGLMQASEFWSLGFTPI-PISALS 335 Query: 149 DLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAV 208 GT EL ++ +++ EE + I + IA+ Sbjct: 336 GTGTGELLDLVCSGL--------IKLEIMENIEEEEEENYIPA--------------IAI 373 Query: 209 VGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKN-HPIEIFDTAGMRKPSRI 267 +GRPNVGKS+++N L+ +R + SG TRD++ + + + DTAG+RK S + Sbjct: 374 IGRPNVGKSSILNALVREDRTIVSPVSGTTRDAIDAEFTGPDGEKFRLIDTAGIRKKSSV 433 Query: 268 TES---LEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 S E +V ++ +++R + ++++A +QDL+I + + G ++ +NKW Sbjct: 434 ASSGSTTEAMSVNRAFRAIRRSDVVALVIEAMACITEQDLKIAERIEREGKGCLVVVNKW 493 Query: 325 DMVSDK-----LNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWK 379 D + +K + D+R K +++L +Y I TG +D+++V+ + K Sbjct: 494 DTIPNKNQETAAHYEDDVREK-LRSLKWAPIVYSTAI---TGHSVDNIVVAAATVQKERS 549 Query: 380 TRITTSYLNSWLQKT-QLQNPPPTIFNRYNRLKYITQ 415 R++T+ LN +++ ++PP T + R+ Y TQ Sbjct: 550 RRLSTAILNQVIREAVAFKSPPRTRGGKRGRVYYCTQ 586 >gi|325115126|emb|CBZ50682.1| hypothetical protein NCLIV_011480 [Neospora caninum Liverpool] Length = 631 Score = 167 bits (424), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 125/495 (25%), Positives = 214/495 (43%), Gaps = 67/495 (13%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKM----AVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 I ++G PNVGKS+LFN+L K+ A+V + G TRDR Y ++ G F +VDT G+ Sbjct: 168 ICLLGRPNVGKSSLFNKLKDKEDLAADAIVRDEDGTTRDRHYAFSVWRGCPFVVVDTGGL 227 Query: 61 ---ADGKNCSI-AKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIII 116 D ++ A+++ Q + A+ EA +F++D + G+ D I FLR+ P+++ Sbjct: 228 IFEEDRYAAALYAEEIRTQVQFALAEATCAIFVVDGRHGLAGEDEVIADFLRRAGTPVVV 287 Query: 117 VSNKMDT-RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 NK + + + E + L + SA +G ++L F+ F Sbjct: 288 CVNKTENYQSGHASAQEFWKLGLGQPFPCSAIEGVGLADLLDACFEHFPPDARRSSSRAS 347 Query: 176 ENNKRNEESPK-----ENITSEGKSSVKNISKPLR-------------IAVVGRPNVGKS 217 + E K + + G S + L +A+VGRPNVGKS Sbjct: 348 RAQRETERGEKTRDAPDYAEAAGPSRQRTDRDALSQLVFSTFAKEDVNVAIVGRPNVGKS 407 Query: 218 TLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS--RITESLEQKT 275 L+NRLLG +R L ++G TRD+V + + DTAG+R+ + + E Sbjct: 408 QLLNRLLGVSRSLVSPEAGTTRDAVDELVERDSVVYRLVDTAGIRRARVVKAQQGTEFVM 467 Query: 276 VKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQ 335 VK++ +++ C+ +++ DA KQD+ + + G A V+ +NKWD V + Sbjct: 468 VKRAERALTRCDVCLLVCDAERGLVKQDVLLAKRIEEEGRAAVIVMNKWDTVDTEATAHH 527 Query: 336 DLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQ 395 ++ T + I +S TG+ + +W +N Q+ Sbjct: 528 EVATYIRSVFYPLRWASIVCVSALTGKN----------ASSIWPA------INEAFQQVS 571 Query: 396 LQNPPPTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIP 455 +Q PP+ ++FC P+ Y+ YL R F+ P Sbjct: 572 IQ----------------------PPTIVVFCNKAEYFPDVYRLYLDFSTRTAFNFHFTP 609 Query: 456 IRMCFQSSKNPYIKK 470 I+ F+ + ++K Sbjct: 610 IKWLFREKRRRELEK 624 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 59/125 (47%), Gaps = 6/125 (4%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGS----QSGITRDSVSISWNWKNHPIEIFDTAG 260 RI ++GRPNVGKS+L N+L L + + G TRD W+ P + DT G Sbjct: 167 RICLLGRPNVGKSSLFNKLKDKEDLAADAIVRDEDGTTRDRHYAFSVWRGCPFVVVDTGG 226 Query: 261 M-RKPSRITESLEQKTVKKSMQ-SVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVV 318 + + R +L + ++ +Q ++ I ++D +D I D + G VV Sbjct: 227 LIFEEDRYAAALYAEEIRTQVQFALAEATCAIFVVDGRHGLAGEDEVIADFLRRAGTPVV 286 Query: 319 LALNK 323 + +NK Sbjct: 287 VCVNK 291 >gi|317011055|gb|ADU84802.1| GTP-binding protein EngA [Helicobacter pylori SouthAfrica7] Length = 460 Score = 167 bits (422), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 131/461 (28%), Positives = 221/461 (47%), Gaps = 29/461 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAI+G PNVGKS+LFNRL K+++A+ + G TRD + +NG ++DT G+A Sbjct: 8 TIAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA-- 65 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSNKM 121 K+ ++K++ A + LIL+++D K + P D I F + K N +V NK+ Sbjct: 66 KDAFLSKEIKAFNLKAAQMSDLILYVVDGK--LIPSDEDIKLFREVFKINPNCFLVINKI 123 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF------KIFKQKYPNHPLEMI 175 D + Y S + IS H+ G S L I KI +Q LE + Sbjct: 124 DNDKEKERTYAFSSFGMPKSFNISVSHNRGISVLIDAILHALGLTKIIEQDLDTDILESL 183 Query: 176 ENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQS 235 E EE E +++ ++GR NVGKS+L+N L R + S + Sbjct: 184 ETPNNTEEENNEEEI-------------IQVGIIGRVNVGKSSLLNALTKKERSIVSSVA 230 Query: 236 GITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDA 295 G T D + + + I DTAG+R +I +E+ ++++ +++ +++LD Sbjct: 231 GTTIDPIDETILIGDQKICFVDTAGIRHRGKIL-GIEKYALERTQKALEKSHIALLVLDV 289 Query: 296 TIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINT 355 + PF + D +I ++L LNKWD+ + + + + L I + Sbjct: 290 SAPFVELDEKISSLADKHSLGIILILNKWDIRYAPYEEIMAVLKRKFRFLEYAPVITTSC 349 Query: 356 ISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQ 415 + R ++++ ++E+ + + RI TS LNS + + ++P P+ + ++ Y TQ Sbjct: 350 LKTR---HIEEIKHKIIEVYECFSKRIPTSLLNSVISQATQKHPLPSDGGKLVKVYYATQ 406 Query: 416 IQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 + PP + P + SYKRYLIN LR F+ G P+ Sbjct: 407 FATKPPQISLVMNRPKALHFSYKRYLINTLRKEFNFLGTPL 447 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 67/230 (29%), Positives = 112/230 (48%), Gaps = 25/230 (10%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 I + I+G NVGKS+L N L KK+ ++V + G T D + +I VDTAGI Sbjct: 198 IIQVGIIGRVNVGKSSLLNALTKKERSIVSSVAGTTIDPIDETILIGDQKICFVDTAGIR 257 Query: 62 D-GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 GK I K ++T+ A+ ++H+ L ++D A D I+S K ++ II++ NK Sbjct: 258 HRGKILGIEKYALERTQKALEKSHIALLVLDVSAPFVELDEKISSLADKHSLGIILILNK 317 Query: 121 MDTRIAQRNFYEIYS--------LDFKEIVEISAEHDLGTSEL-HSVI--FKIFKQKYPN 169 D R A + EI + L++ ++ S E+ H +I ++ F ++ P Sbjct: 318 WDIRYAP--YEEIMAVLKRKFRFLEYAPVITTSCLKTRHIEEIKHKIIEVYECFSKRIPT 375 Query: 170 HPLEMIENNKRNEESPKENITSEGKSSVK------NISKPLRIAVV-GRP 212 L N+ ++ + K + S+G VK +KP +I++V RP Sbjct: 376 SLL----NSVISQATQKHPLPSDGGKLVKVYYATQFATKPPQISLVMNRP 421 >gi|156603663|ref|XP_001618879.1| hypothetical protein NEMVEDRAFT_v1g153067 [Nematostella vectensis] gi|156200746|gb|EDO26779.1| predicted protein [Nematostella vectensis] Length = 304 Score = 166 bits (421), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 87/257 (33%), Positives = 144/257 (56%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP 264 R AVVGRPN GKS+ IN L+G +R + + +G TRDS+ +N + DTAG+RK Sbjct: 46 RFAVVGRPNAGKSSFINALIGEDRNIVTNIAGTTRDSIDTKYNRFGFDFNLVDTAGIRKK 105 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 S++ E LE +V ++++++ + I+++DAT FE QD I VV+ +NKW Sbjct: 106 SKVKEDLEFYSVMRAVRTIEYSDVIILMVDATRGFEGQDQNIFWLAEKNKKGVVILINKW 165 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITT 384 D+V + N ++D K + D+ + +S T + + + + +E+ K RI T Sbjct: 166 DLVEKETNTMRDYEAAVRKQIAPFTDVPVIFVSVLTKQRIFKAIETAVEVFNNRKNRIPT 225 Query: 385 SYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINR 444 S LN + + NPPP I ++ ++KY Q+ + P F F P + E Y+RY+ N+ Sbjct: 226 SKLNDTMLEIIKNNPPPAIKGKFVKIKYCMQLPTPTPQFAFFANLPQYVKEPYRRYIENQ 285 Query: 445 LRINFSLSGIPIRMCFQ 461 LR +++ SG+PI + F+ Sbjct: 286 LREHYNFSGVPITIYFR 302 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 59/122 (48%), Gaps = 6/122 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 A+VG PN GKS+ N L+ + +V N G TRD + + G FN+VDTAGI K Sbjct: 47 FAVVGRPNAGKSSFINALIGEDRNIVTNIAGTTRDSIDTKYNRFGFDFNLVDTAGIR--K 104 Query: 65 NCSIAKQMNDQTEL----AINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + + + + + I + +I+ ++D+ G D I K ++I+ NK Sbjct: 105 KSKVKEDLEFYSVMRAVRTIEYSDVIILMVDATRGFEGQDQNIFWLAEKNKKGVVILINK 164 Query: 121 MD 122 D Sbjct: 165 WD 166 >gi|226328000|ref|ZP_03803518.1| hypothetical protein PROPEN_01891 [Proteus penneri ATCC 35198] gi|225203704|gb|EEG86058.1| hypothetical protein PROPEN_01891 [Proteus penneri ATCC 35198] Length = 343 Score = 166 bits (419), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 93/273 (34%), Positives = 153/273 (56%), Gaps = 12/273 (4%) Query: 203 PLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMR 262 P+++A+VGRPNVGKSTL NR+LG +R++ G TRDS+ I + I DTAG+R Sbjct: 55 PVKLAIVGRPNVGKSTLTNRMLGEDRVVVYDMPGTTRDSIYIPMERDDKDYIIIDTAGVR 114 Query: 263 KPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALN 322 K ++ E++E+ +V K++Q++ ++++DA QDL ++ + N G ++V+A+N Sbjct: 115 KRGKVKETVEKFSVIKTLQAIEDANVALLVIDAREGISDQDLSLLGYILNAGRSLVIAVN 174 Query: 323 KWDMVSDKLNLLQDLR--TKAIKNLPQIGDI---YINTISGRTGEGLDDLMVSVLEINKL 377 KWD + QD R KA+ +L ++G + ++ IS G G+ +L S+ E Sbjct: 175 KWD------GMTQDDREQVKAMLDL-KLGFVDFARVHFISALHGSGVGNLFESIQEAYVC 227 Query: 378 WKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESY 437 R+ TS L ++ + + PP + R ++KY +PP +I +P+SY Sbjct: 228 ATRRVGTSMLTRIMKMAEDDHQPPIVRGRRVKMKYAHAGGYNPPVVVIHGNQVTDLPDSY 287 Query: 438 KRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 KRYL+N R + G PIR+ F+ +NPY K Sbjct: 288 KRYLMNYFRRTLQVMGTPIRIQFKEGENPYADK 320 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 54/169 (31%), Positives = 89/169 (52%), Gaps = 11/169 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD-G 63 +AIVG PNVGKSTL NR++ + VV + PG TRD +Y + + I+DTAG+ G Sbjct: 58 LAIVGRPNVGKSTLTNRMLGEDRVVVYDMPGTTRDSIYIPMERDDKDYIIIDTAGVRKRG 117 Query: 64 K-NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 K ++ K +T AI +A++ L +ID++ GI+ D ++ ++ ++I NK D Sbjct: 118 KVKETVEKFSVIKTLQAIEDANVALLVIDAREGISDQDLSLLGYILNAGRSLVIAVNKWD 177 Query: 123 TRIAQRNFYEIYSL--------DFKEIVEISAEHDLGTSELHSVIFKIF 163 + Q + ++ ++ DF + ISA H G L I + + Sbjct: 178 G-MTQDDREQVKAMLDLKLGFVDFARVHFISALHGSGVGNLFESIQEAY 225 >gi|213649668|ref|ZP_03379721.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 339 Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 94/296 (31%), Positives = 159/296 (53%), Gaps = 10/296 (3%) Query: 175 IENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQ 234 E + EE+P+++ + S P+++A+VGRPNVGKSTL NR+LG R++ Sbjct: 31 FEAEQNGEEAPEDDFDPQ--------SLPIKLAIVGRPNVGKSTLTNRILGEERVVVYDM 82 Query: 235 SGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLD 294 G TRDS+ I + DTAG+RK +IT+++E+ +V K++Q++ ++++D Sbjct: 83 PGTTRDSIYIPMERDEREYVLIDTAGVRKRGKITDAVEKFSVIKTLQAIEDANVVLLVID 142 Query: 295 ATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYIN 354 A QDL ++ + N+G ++V+ +NKWD +S ++ + ++ L I ++ Sbjct: 143 AREGISDQDLSLLGFILNSGRSLVIVVNKWDGLSQEVK--EQVKETLDFRLGFIDFARVH 200 Query: 355 TISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYIT 414 IS G G+ +L SV E R++T+ L + + PP + R +LKY Sbjct: 201 FISALHGSGVGNLFESVREAYDSSTRRVSTAMLTRIMTMAVEDHQPPLVRGRRVKLKYAH 260 Query: 415 QIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I +P+SYKRYL+N R + + G PIR+ F+ +NPY K Sbjct: 261 TGGYNPPIVVIHGNQVKDLPDSYKRYLMNYFRKSLEVMGTPIRIQFKEGENPYANK 316 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 52/168 (30%), Positives = 91/168 (54%), Gaps = 9/168 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD-G 63 +AIVG PNVGKSTL NR++ ++ VV + PG TRD +Y + + ++DTAG+ G Sbjct: 54 LAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDEREYVLIDTAGVRKRG 113 Query: 64 KNCSIAKQMND-QTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 K ++ + +T AI +A+++L +ID++ GI+ D ++ F+ ++IV NK D Sbjct: 114 KITDAVEKFSVIKTLQAIEDANVVLLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWD 173 Query: 123 -------TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 ++ + + + +DF + ISA H G L + + + Sbjct: 174 GLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLFESVREAY 221 >gi|213585218|ref|ZP_03367044.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 330 Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 94/296 (31%), Positives = 159/296 (53%), Gaps = 10/296 (3%) Query: 175 IENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQ 234 E + EE+P+++ + S P+++A+VGRPNVGKSTL NR+LG R++ Sbjct: 22 FEAEQNGEEAPEDDFDPQ--------SLPIKLAIVGRPNVGKSTLTNRILGEERVVVYDM 73 Query: 235 SGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLD 294 G TRDS+ I + DTAG+RK +IT+++E+ +V K++Q++ ++++D Sbjct: 74 PGTTRDSIYIPMERDEREYVLIDTAGVRKRGKITDAVEKFSVIKTLQAIEDANVVLLVID 133 Query: 295 ATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYIN 354 A QDL ++ + N+G ++V+ +NKWD +S ++ + ++ L I ++ Sbjct: 134 AREGISDQDLSLLGFILNSGRSLVIVVNKWDGLSQEVK--EQVKETLDFRLGFIDFARVH 191 Query: 355 TISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYIT 414 IS G G+ +L SV E R++T+ L + + PP + R +LKY Sbjct: 192 FISALHGSGVGNLFESVREAYDSSTRRVSTAMLTRIMTMAVEDHQPPLVRGRRVKLKYAH 251 Query: 415 QIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +PP +I +P+SYKRYL+N R + + G PIR+ F+ +NPY K Sbjct: 252 TGGYNPPIVVIHGNQVKDLPDSYKRYLMNYFRKSLEVMGTPIRIQFKEGENPYANK 307 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 52/168 (30%), Positives = 91/168 (54%), Gaps = 9/168 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD-G 63 +AIVG PNVGKSTL NR++ ++ VV + PG TRD +Y + + ++DTAG+ G Sbjct: 45 LAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDEREYVLIDTAGVRKRG 104 Query: 64 KNCSIAKQMND-QTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 K ++ + +T AI +A+++L +ID++ GI+ D ++ F+ ++IV NK D Sbjct: 105 KITDAVEKFSVIKTLQAIEDANVVLLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWD 164 Query: 123 -------TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 ++ + + + +DF + ISA H G L + + + Sbjct: 165 GLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLFESVREAY 212 >gi|32186993|gb|AAP73740.1| EngA [Escherichia coli] Length = 369 Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 106/340 (31%), Positives = 174/340 (51%), Gaps = 4/340 (1%) Query: 132 EIYSLDFKEIVEISAEHDLGT-SELHSVIFKIFKQKYPNHPLEMIENNKRNEESPKENIT 190 + Y+L EI I+A H G S L V+ + P ++ + + +EN Sbjct: 10 DFYALGLGEIYPIAASHGRGVLSLLEHVLLPWMEDLAPQEEVDE-DAEYWAQFEAEENGE 68 Query: 191 SEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKN 250 E + S P+++A+VGRPNVGKSTL NR+LG R++ G TRDS+ I Sbjct: 69 EEEEDDFDPQSLPIKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDG 128 Query: 251 HPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSV 310 + DTAG+RK +IT+++E+ +V K++Q++ ++++DA QDL ++ + Sbjct: 129 REYVLIDTAGVRKRGKITDAVEKFSVIKTLQAIEDANVVMLVIDAREGISDQDLSLLGFI 188 Query: 311 FNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVS 370 N+G ++V+ +NKWD +S ++ + ++ L I ++ IS G G+ +L S Sbjct: 189 LNSGRSLVIVVNKWDGLSQEVK--EQVKETLDFRLGFIDFARVHFISALHGSGVGNLFES 246 Query: 371 VLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFLIFCTFP 430 V E R+ TS L + + PP + R +LKY +PP +I Sbjct: 247 VREAYDSSTRRVGTSMLTRIMTMAVEDHQPPLVRGRRVKLKYAHAGGYNPPIVVIHGNQV 306 Query: 431 NKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 +P+SYKRYL+N R + + G PIR+ F+ +NPY K Sbjct: 307 KDLPDSYKRYLMNYFRKSLDVMGSPIRIQFKEGENPYANK 346 Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 52/168 (30%), Positives = 92/168 (54%), Gaps = 9/168 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD-G 63 +AIVG PNVGKSTL NR++ ++ VV + PG TRD +Y +G + ++DTAG+ G Sbjct: 84 LAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKRG 143 Query: 64 KNCSIAKQMND-QTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 K ++ + +T AI +A++++ +ID++ GI+ D ++ F+ ++IV NK D Sbjct: 144 KITDAVEKFSVIKTLQAIEDANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWD 203 Query: 123 -------TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 ++ + + + +DF + ISA H G L + + + Sbjct: 204 GLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLFESVREAY 251 >gi|215427036|ref|ZP_03424955.1| GTP-binding protein EngA [Mycobacterium tuberculosis T92] gi|289750270|ref|ZP_06509648.1| GTP-binding protein engA [Mycobacterium tuberculosis T92] gi|289690857|gb|EFD58286.1| GTP-binding protein engA [Mycobacterium tuberculosis T92] Length = 334 Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 104/332 (31%), Positives = 167/332 (50%), Gaps = 29/332 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ A+ G F + DT G + Sbjct: 29 VAVVGRPNVGKSTLVNRILGRREAVVQDIPGVTRDRVCYDALWTGRRFVVQDTGGW-EPN 87 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + + +Q +A+ A ++ ++D+ G T D A L + P+ + +NK+D+ Sbjct: 88 AKGLQRLVAEQASVAMRTADAVILVVDAGVGATAADEAAARILLRSGKPVFLAANKVDSE 147 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + ++SL E ISA H G ++L + + Sbjct: 148 KGESDAAALWSLGLGEPHAISAMHGRGVADLLDGVLAALPEV------------------ 189 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 E+ ++ G P R+A+VG+PNVGKS+L+N+L G R + +G T D V Sbjct: 190 -GESASASG--------GPRRVALVGKPNVGKSSLLNKLAGDQRSVVHEAAGTTVDPVDS 240 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 DTAG+R+ E ++ ++ + E IVL+DA+ P +QDL Sbjct: 241 LIELGGDVWRFVDTAGLRRKVGQASGHEFYASVRTHAAIDSAEVAIVLIDASQPLTEQDL 300 Query: 305 RIVDSVFNTGHAVVLALNKWDMV-SDKLNLLQ 335 R++ V G A+VLA NKWD+V D+ LLQ Sbjct: 301 RVISMVIEAGRALVLAYNKWDLVDEDRRELLQ 332 >gi|149002004|ref|ZP_01826958.1| GTP-binding protein EngA [Streptococcus pneumoniae SP14-BS69] gi|147759813|gb|EDK66803.1| GTP-binding protein EngA [Streptococcus pneumoniae SP14-BS69] Length = 353 Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 107/385 (27%), Positives = 191/385 (49%), Gaps = 38/385 (9%) Query: 85 LILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQRNFYEIYSLDFKEIVEI 144 L F++ K GIT D + L K + P+I+ NK+D + + Y+ Y+L E + I Sbjct: 2 LSFFVVSGKEGITDADEYVARKLYKTHKPVILAVNKVDNPEMRNDIYDFYALGLGEPLPI 61 Query: 145 SAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEESPKENITSEGKSSVKNISKPL 204 S+ H +GT ++ I + N P N+ EE+P + Sbjct: 62 SSVHGIGTGDVLDAIVE-------NLP------NEYEEENPD----------------VI 92 Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISW-NWKNHPIEIFDTAGMRK 263 + +++GRPNVGKS+LIN +LG +R++ +G TRD++ + + + DTAGMRK Sbjct: 93 KFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTHFTDTDGQEFTMIDTAGMRK 152 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 ++ E+ E+ +V ++M+++ + +++++A + D RI G +++ +NK Sbjct: 153 SGKVYENTEKYSVMRAMRAIDRSDVVLMVINAEEGIREYDKRIAGFAHEAGKGMIIVVNK 212 Query: 324 WDMVSDK----LNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWK 379 WD + N +D+R + + LP I++ S T + L L + +I++ Sbjct: 213 WDTLEKDNHTMKNWEEDIREQ-FQYLPYAPIIFV---SALTKQRLHKLPEMIKQISESQN 268 Query: 380 TRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKR 439 TRI ++ LN + NP PT + ++ Y TQ+ + PP+F+IF + SY R Sbjct: 269 TRIPSAVLNDVIMDAIAINPTPTDKGKRLKIFYATQVATKPPTFVIFVNEEELMHFSYLR 328 Query: 440 YLINRLRINFSLSGIPIRMCFQSSK 464 +L N++R F G PI + + K Sbjct: 329 FLENQIRKAFVFEGTPIHLIARKRK 353 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/126 (30%), Positives = 65/126 (51%), Gaps = 13/126 (10%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAI-INGVIFNIVDTAGI---- 60 +++G PNVGKS+L N ++ + + G TRD + +G F ++DTAG+ Sbjct: 95 SLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTHFTDTDGQEFTMIDTAGMRKSG 154 Query: 61 ---ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIV 117 + + S+ + M AI+ + ++L +I+++ GI YD I F + +IIV Sbjct: 155 KVYENTEKYSVMRAMR-----AIDRSDVVLMVINAEEGIREYDKRIAGFAHEAGKGMIIV 209 Query: 118 SNKMDT 123 NK DT Sbjct: 210 VNKWDT 215 >gi|218459464|ref|ZP_03499555.1| GTP-binding protein EngA [Rhizobium etli Kim 5] Length = 191 Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 77/161 (47%), Positives = 109/161 (67%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M +T+AIVG PNVGKSTLFNRLV KK+A+V + PG+TRDR G+A + G+ F I+DTAG+ Sbjct: 1 MSFTVAIVGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRRPGEARLMGLNFTIIDTAGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + S+ +M QTE AI+EA L LF++D+K G+TP D A+ LR++ P+++V+NK Sbjct: 61 EEADEESLQGRMRAQTEAAIDEADLSLFVVDAKNGLTPVDTALAEMLRRRGKPVVLVANK 120 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 + R + FY+ Y+L E ISAEH G +L I + Sbjct: 121 SEARGSDSGFYDAYTLGLGEPKPISAEHGEGMLDLRDAIVE 161 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 59/120 (49%), Gaps = 2/120 (1%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VGRPNVGKSTL NRL+G L G+TRD I DTAG+ + Sbjct: 5 VAIVGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRRPGEARLMGLNFTIIDTAGLEEAD 64 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 ESL+ + ++ ++ + ++ ++DA D + + + G VVL NK + Sbjct: 65 E--ESLQGRMRAQTEAAIDEADLSLFVVDAKNGLTPVDTALAEMLRRRGKPVVLVANKSE 122 >gi|46204117|ref|ZP_00050473.2| COG1160: Predicted GTPases [Magnetospirillum magnetotacticum MS-1] Length = 222 Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 72/163 (44%), Positives = 111/163 (68%) Query: 261 MRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLA 320 MR+ +RI + LE+ V +++VR E +VLLDATIPFEKQDL IVD V + G A+V+ Sbjct: 1 MRRRARIDDKLEKLAVSDGLRAVRFAEVVVVLLDATIPFEKQDLTIVDLVESEGRALVIG 60 Query: 321 LNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKT 380 LNKWD+V+D+ LL+ LR + LPQ+ + + +SG GEG+D LM +V++ +++W Sbjct: 61 LNKWDLVADQSGLLKALREDCTRLLPQVRGVSVVPLSGLAGEGIDKLMQAVVDASEVWSR 120 Query: 381 RITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 R++T+ +N+WL +NPPP + R +++Y TQ++S PP F Sbjct: 121 RVSTARINAWLTDALQRNPPPAVSGRRIKIRYATQVKSRPPHF 163 >gi|205373827|ref|ZP_03226629.1| GTP-binding protein EngA [Bacillus coahuilensis m4-4] Length = 262 Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 93/268 (34%), Positives = 141/268 (52%), Gaps = 29/268 (10%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 IAIVG PNVGKST+FNR+V +++++V + PG+TRDR+Y FNI+DT GI G Sbjct: 5 VIAIVGRPNVGKSTIFNRIVGERISIVEDVPGVTRDRIYSSGEWLNHEFNIIDTGGIEIG 64 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 +Q+ Q E+AI+EA +I+F+ + + G+T D + L K P+++ NK+D Sbjct: 65 DE-PFLEQIRQQAEIAIDEADVIIFMTNGREGVTAADEQVAKILYKTKKPVVLAVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + Y+ YSL F E IS H +G +L + E Sbjct: 124 PEMRELTYDFYSLGFGEPFPISGSHGIGLGDLL---------------------DAAAEH 162 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 PK G +K +++GRPNVGKS+L+N +LG +R++ G TRD++ Sbjct: 163 FPKGQDRDYGDEVIK-------FSLIGRPNVGKSSLVNAILGEDRVIVSDIEGTTRDAID 215 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESL 271 + + P I DTAG+RK + T+ L Sbjct: 216 SIFTFNGSPYVIIDTAGIRKEGKYTKQL 243 >gi|75763043|ref|ZP_00742832.1| GTP-binding protein [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74489475|gb|EAO52902.1| GTP-binding protein [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 251 Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 94/258 (36%), Positives = 142/258 (55%), Gaps = 29/258 (11%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKST+FNR+V +++++V + PGITRDR+Y FNI+DT GI G Sbjct: 6 IAIVGRPNVGKSTIFNRIVGERVSIVEDIPGITRDRIYSAGEWLNHEFNIIDTGGIDIGD 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + Q+ Q E+AI+EA +I+F+ + + G+T D + L + PI++ NK+D Sbjct: 66 EPFLT-QIRQQAEVAIDEADVIIFMTNGRDGVTAADEEVAKILYRSKKPIVLAVNKVDNP 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + Y+ YSL F E IS H LG +L + NH IE ++E+ Sbjct: 125 EMRSDIYDFYSLGFGEPFPISGTHGLGLGDL--------LDEAANH-FPKIEEEAYDDET 175 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 +R +++GRPNVGKS+L++ LLG R++ + +G TRD+V Sbjct: 176 -------------------IRFSLIGRPNVGKSSLVHALLGQERVIVSNIAGPTRDAVDT 216 Query: 245 SWNWKNHPIEIFDTAGMR 262 ++ + I DTAGMR Sbjct: 217 PYSTDDQDYVIIDTAGMR 234 >gi|313683277|ref|YP_004061015.1| ribosome-associated GTPase enga [Sulfuricurvum kujiense DSM 16994] gi|313156137|gb|ADR34815.1| ribosome-associated GTPase EngA [Sulfuricurvum kujiense DSM 16994] Length = 511 Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 133/499 (26%), Positives = 223/499 (44%), Gaps = 60/499 (12%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKS+LFNRL+K++ A+ G TRD A++ I+DT G+ +G Sbjct: 4 LAIIGRPNVGKSSLFNRLLKQRDAITSEQAGTTRDVKKRVAVVVDKEVEILDTGGLDEG- 62 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 C + ++ +++ A +EA +ILF++D K+ D + L I +V NK+D Sbjct: 63 -CELYDRIKEKSLKAAHEADIILFMVDGKSLPEEDDKKLFYELESMGKAIALVVNKIDND 121 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 Q +E Y I IS H+ L + I + P + EN+ E Sbjct: 122 KMQEKLWEYYEFGTDRIFGISVAHNRSLLPLLNWI----ASELPESSIVKTENDVVVAED 177 Query: 185 PKENITSEGKS----------------------------SVKNISKPLRIAV----VGRP 212 + + ++ S++ + + R V G Sbjct: 178 ELDGFDAAMRASAEDDEFEDEDEDDGFFIPEEDDEEEETSIEALEEAYRGIVKEYEAGDV 237 Query: 213 NVGKSTLINR-----------LLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGM 261 N K +I R LLG +R + S +G T D + + + + I DTAG+ Sbjct: 238 NQMKVAIIGRVNVGKSSLLNALLGEDRSVVSSVAGTTIDPIDETVEYNDKKITFIDTAGI 297 Query: 262 RKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLAL 321 RK +I +E+ + ++ + + T + +++LDA+ PF D +I V A ++ L Sbjct: 298 RKRGKIL-GIEKYALMRTEEMLETADIALLVLDASQPFMDLDEKIAGFVDKNRLACLIVL 356 Query: 322 NKWDMV--SDKLNLLQDLRT--KAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKL 377 NKWDM D ++ ++R K + P I TIS ++ + + + +L+IN+ Sbjct: 357 NKWDMAPREDYDKIIAEVRDRFKFLSYAPII------TISAQSKQRVHKIFEMLLKINEN 410 Query: 378 WKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESY 437 + RI+T LN +Q ++ P+I RL + TQ PP + P + SY Sbjct: 411 YSQRISTGKLNEVIQAAMRKHILPSINGMNIRLYFATQYDIRPPRIALIMNKPQGLHFSY 470 Query: 438 KRYLINRLRINFSLSGIPI 456 +RYL N+LR F G P+ Sbjct: 471 RRYLTNQLREQFDFEGTPV 489 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 68/121 (56%), Gaps = 4/121 (3%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP 264 ++A++GRPNVGKS+L NRLL +T Q+G TRD + +EI DT G+ + Sbjct: 3 KLAIIGRPNVGKSSLFNRLLKQRDAITSEQAGTTRDVKKRVAVVVDKEVEILDTGGLDEG 62 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 + + +++K++K + ++ + + ++D E+ D ++ + + G A+ L +NK Sbjct: 63 CELYDRIKEKSLKAAHEA----DIILFMVDGKSLPEEDDKKLFYELESMGKAIALVVNKI 118 Query: 325 D 325 D Sbjct: 119 D 119 >gi|145489801|ref|XP_001430902.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124398003|emb|CAK63504.1| unnamed protein product [Paramecium tetraurelia] Length = 607 Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 82/263 (31%), Positives = 152/263 (57%), Gaps = 4/263 (1%) Query: 203 PLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMR 262 P+ ++++GR NVGKS+L+N LLG +R++ G TRD +S W +K I++ DTAG+ Sbjct: 298 PIMLSIMGRQNVGKSSLVNTLLGEDRVIADPTPGTTRDPISTFWVYKGQKIQLVDTAGIE 357 Query: 263 KPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALN 322 +I L+ + + K+ ++R ++L+D+ F + DL + + G +++A+N Sbjct: 358 PKPKIQTDLDLQIIAKTRSTLRFSNVVVLLIDSLGAFREVDLELAQEIVKQGRGLIIAVN 417 Query: 323 KWDMVSD--KLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKT 380 KWDMV + K +++ L+ + +NL ++ + + TIS +D LM V+++ W T Sbjct: 418 KWDMVDNDYKAKIVKYLKGQLERNLGEVPNCKLITISAEKKINIDLLMDQVIQVYDKWNT 477 Query: 381 RITTSYLNSWLQK-TQLQNPPPTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKR 439 R++T LN WL K ++Q+ P ++ ++++I QI+ PP+F +F + SY + Sbjct: 478 RVSTGLLNDWLNKFKKIQSLPSEDGDKL-KIRFIAQIKVRPPTFALFINQGSLFKTSYLK 536 Query: 440 YLINRLRINFSLSGIPIRMCFQS 462 +L +L F +SG+PIR+ + Sbjct: 537 FLRKKLSEEFDISGVPIRLVLRD 559 Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 44/116 (37%), Positives = 68/116 (58%), Gaps = 11/116 (9%) Query: 2 IYTIAIVGAPNVGKSTLFNRL-VKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 + TI+++G +VGKS+LFN+L + +A+ N ITRDR + I + VDTAGI Sbjct: 14 LLTISLIGRSSVGKSSLFNKLQTGENVAITSNQKNITRDRKEAISEIFPLPIRFVDTAGI 73 Query: 61 ADGKNCSIAKQMND-------QTELAINEAHLILFLIDSKAGITPYDHAITSFLRK 109 +N ++ K +N QT AI + + LF++D+KAG+T DH I +L+K Sbjct: 74 ---ENVALKKILNPLQQKMLMQTINAIEYSDIALFVVDAKAGLTNIDHQIARWLKK 126 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 2/120 (1%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 ++I+G NVGKS+L N L+ + + PG TRD + + G +VDTAGI Sbjct: 301 LSIMGRQNVGKSSLVNTLLGEDRVIADPTPGTTRDPISTFWVYKGQKIQLVDTAGIEPKP 360 Query: 65 --NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + Q+ +T + +++++ LIDS D + + K+ +II NK D Sbjct: 361 KIQTDLDLQIIAKTRSTLRFSNVVVLLIDSLGAFREVDLELAQEIVKQGRGLIIAVNKWD 420 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 31/95 (32%), Positives = 53/95 (55%), Gaps = 3/95 (3%) Query: 204 LRIAVVGRPNVGKSTLINRL-LGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMR 262 L I+++GR +VGKS+L N+L G N +T +Q ITRD PI DTAG+ Sbjct: 15 LTISLIGRSSVGKSSLFNKLQTGENVAITSNQKNITRDRKEAISEIFPLPIRFVDTAGIE 74 Query: 263 KPS--RITESLEQKTVKKSMQSVRTCETTIVLLDA 295 + +I L+QK + +++ ++ + + ++DA Sbjct: 75 NVALKKILNPLQQKMLMQTINAIEYSDIALFVVDA 109 >gi|160331570|ref|XP_001712492.1| engA [Hemiselmis andersenii] gi|159765940|gb|ABW98167.1| engA [Hemiselmis andersenii] Length = 519 Score = 160 bits (405), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 121/466 (25%), Positives = 220/466 (47%), Gaps = 44/466 (9%) Query: 5 IAIVGAPNVGKSTLFNRL--VKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 +AIVG NVGKSTL NR+ + ++V + G+TRD+ Y +A F + DT G A Sbjct: 80 VAIVGRGNVGKSTLVNRISGAFEDGSIVHDLEGVTRDKNYRKAFWCEHQFLVTDTGGFAF 139 Query: 63 GKNCS--IAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 +N S + +Q AI EA++I+F++D K + D + ++L+ + P+++ NK Sbjct: 140 EENNSNKFEADVKEQALKAIEEANVIIFVVDGKCELDINDIELANYLKFQKTPVLLAVNK 199 Query: 121 MDT-RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNK 179 + + + +SL F E + ISA H T L Sbjct: 200 SENLKKFDSEGSKFWSLGFGEPIPISAIHGTNTDVLLD---------------------- 237 Query: 180 RNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITR 239 + IT K S +++A++G+PNVGKS+++N L R + G TR Sbjct: 238 -------KTITHLPKISFPFSETSIKVAIIGKPNVGKSSILNFLTNKKRAIVSDIPGTTR 290 Query: 240 DSVS--ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATI 297 DS IS ++ + DTAG+RK I E + ++ ++++ C+ + ++DA+ Sbjct: 291 DSCDSFISGGSNSNIYNLIDTAGIRKKKMIEYGPEFFMINRTFKAIQKCDCVLFVIDAST 350 Query: 298 PFEKQDLRIVDSVFNTGHAVVLALNKWDMVS--DKLNL--LQDLRTKAIKNLPQIGDIYI 353 +QD ++ + + G + V+ NKWD +S DKLN + L + ++ + ++ Sbjct: 351 GITEQDQKLSERIQEQGKSCVIIFNKWDKISSKDKLNFQKFKLLIKRMLQPISWADVLFT 410 Query: 354 NTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKT-QLQNPPPTIFNRYNRLKY 412 + I+G + + D + S + + ++TS N +Q+ + + PP + ++ Y Sbjct: 411 SAINGNSCNKIFDYIDSAIT---QYNRHVSTSIYNEIVQEAIKWKAPPLFKTGKQGKIYY 467 Query: 413 ITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 TQ+ PP IF N ++YK+Y+ + R G +++ Sbjct: 468 CTQVSDQPPGIAIFVNDSNLFNDTYKKYIEAQFRTALGFKGTSLKI 513 >gi|71662850|ref|XP_818425.1| small GTP-binding protein [Trypanosoma cruzi strain CL Brener] gi|70883677|gb|EAN96574.1| small GTP-binding protein, putative [Trypanosoma cruzi] Length = 571 Score = 159 bits (403), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 133/478 (27%), Positives = 216/478 (45%), Gaps = 47/478 (9%) Query: 5 IAIVGAPNVGKSTLFNRLVKK-----KMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAG 59 +AIVG N GKS+LFN L + + +V + GITRD + G A + G+ F I+DT G Sbjct: 105 VAIVGRMNSGKSSLFNLLSEDPTMPNRKNIVRDFDGITRDSVEGHAQLEGMHFTIIDTPG 164 Query: 60 IADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 + +GK A + + + AI F+ + + + +L+ K +P ++ N Sbjct: 165 MVNGKLVEEAFRTVETADAAI-------FVTSVDEDLHSAEFDLIHYLQLKCMPTFVLVN 217 Query: 120 KMD-------TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPL 172 KMD R+ +R L + SA G L +V+ + Y H + Sbjct: 218 KMDLVPLDEEDRVLER----YNGLGLGNAIPFSARRKSGMEMLAAVLEPL----YHIHSM 269 Query: 173 EMIENN-------KRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLG 225 + +EN+ + +ES E I + + +RIA+VGR N GKS+LINRL+G Sbjct: 270 QKVENDWDIEDLAMQGDESAMEEIRDRNCAD-----RFIRIALVGRTNSGKSSLINRLVG 324 Query: 226 YNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGM-RKPSRITESLEQKTVKKSMQSVR 284 + R + TRD V +S +K +++ DTAG+ R R + S+ +R Sbjct: 325 FERSRAVDEKNSTRDPVELSCIYKGRKVKLIDTAGLTRHRFRADRDFIGRIHDLSVNEIR 384 Query: 285 TCETTIVLLDATIPF-EKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIK 343 IV+ DAT K D+ ++ SV G +L NKWD V D+ + + K + Sbjct: 385 YAHVVIVVFDATEGHPNKYDMAVLHSVAAEGRPFLLCANKWDAVLDQSATAEAIDFKIKR 444 Query: 344 NLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTI 403 + ++ +S TG L LM L + W R+ + L +K + P Sbjct: 445 QVREVKYSNAVVVSAHTGLNLTLLMDQALLLYDTWNKRVRRAELTRLWRKMEKSVIIPYH 504 Query: 404 FNRYNRLKYITQIQSSPPSFLIFCTFPNK---IPESYKRYLINRLRINFSLSGIPIRM 458 R R ITQ+ + PP+FL+ N +P++ + + N + F G+PIR+ Sbjct: 505 VARVGR---ITQVNTRPPTFLLHLQTKNDENTLPKALQEMMKNTIVEEFDFRGVPIRL 559 Score = 41.2 bits (95), Expect = 0.38, Method: Compositional matrix adjust. Identities = 34/129 (26%), Positives = 56/129 (43%), Gaps = 14/129 (10%) Query: 204 LRIAVVGRPNVGKSTLINRL-----LGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDT 258 LR+A+VGR N GKS+L N L + + + GITRDSV + I DT Sbjct: 103 LRVAIVGRMNSGKSSLFNLLSEDPTMPNRKNIVRDFDGITRDSVEGHAQLEGMHFTIIDT 162 Query: 259 AGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVV 318 GM + K V+++ ++V T + I + + ++ + Sbjct: 163 PGM---------VNGKLVEEAFRTVETADAAIFVTSVDEDLHSAEFDLIHYLQLKCMPTF 213 Query: 319 LALNKWDMV 327 + +NK D+V Sbjct: 214 VLVNKMDLV 222 >gi|47094517|ref|ZP_00232186.1| GTPase family protein [Listeria monocytogenes str. 4b H7858] gi|47017110|gb|EAL07974.1| GTPase family protein [Listeria monocytogenes str. 4b H7858] Length = 311 Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 92/335 (27%), Positives = 171/335 (51%), Gaps = 30/335 (8%) Query: 131 YEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEESPKENIT 190 Y+ YSL F E IS H LG ++ + + +P + EE P + + Sbjct: 6 YDFYSLGFGEPYPISGSHGLGLGDMLDAV----RAHFPK---------EEEEEYPDDTV- 51 Query: 191 SEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKN 250 + +++GRPNVGKS+++N LLG +R++ +G TRD++ ++ + Sbjct: 52 --------------KFSLIGRPNVGKSSILNALLGEDRVIVSDIAGTTRDAIDTTYTFDG 97 Query: 251 HPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSV 310 + DTAGMRK ++ ES E+ +V ++M+++ + +V+++A +QD RI Sbjct: 98 QDYVMIDTAGMRKRGKVYESTEKYSVLRAMRAIERSDVVLVVINAEEGIREQDKRIAGYA 157 Query: 311 FNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQ-IGDIYINTISGRTGEGLDDLMV 369 + G A+++ +NKWD ++ + ++ T+ I+ Q + I +S +T + L++L Sbjct: 158 HDAGRAIIIVVNKWDAINKDEKTI-NVWTEDIREQFQFLSYAPIVFVSAKTKQRLNNLFP 216 Query: 370 SVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFLIFCTF 429 + +++ R+ +S LN + NP P + ++ Y TQ+ PP+F++F Sbjct: 217 LINQVSDNHSLRVQSSMLNDVISDAVAMNPSPMDKGKRLKIFYTTQVAVKPPTFVVFVND 276 Query: 430 PNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 P + SY+R+L NR+R F G PIR+ + K Sbjct: 277 PELMHFSYERFLENRIREAFPFEGTPIRVIARKRK 311 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/186 (25%), Positives = 85/186 (45%), Gaps = 25/186 (13%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI---- 60 +++G PNVGKS++ N L+ + +V + G TRD + +G + ++DTAG+ Sbjct: 53 FSLIGRPNVGKSSILNALLGEDRVIVSDIAGTTRDAIDTTYTFDGQDYVMIDTAGMRKRG 112 Query: 61 ---ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIV 117 + S+ + M AI + ++L +I+++ GI D I + IIIV Sbjct: 113 KVYESTEKYSVLRAMR-----AIERSDVVLVVINAEEGIREQDKRIAGYAHDAGRAIIIV 167 Query: 118 SNKMDTRIAQRNFYEIYSLDFKE---------IVEISAEHDLGTSELHSVIFKIFKQKYP 168 NK D +++ D +E IV +SA+ T + + +F + Q Sbjct: 168 VNKWDAINKDEKTINVWTEDIREQFQFLSYAPIVFVSAK----TKQRLNNLFPLINQVSD 223 Query: 169 NHPLEM 174 NH L + Sbjct: 224 NHSLRV 229 >gi|187918374|ref|YP_001883937.1| GTP-binding protein EngA [Borrelia hermsii DAH] gi|119861222|gb|AAX17017.1| GTP-binding protein [Borrelia hermsii DAH] Length = 438 Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 119/447 (26%), Positives = 210/447 (46%), Gaps = 44/447 (9%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 ++ I G PNVGKSTLFN+L+ ++ G+TRD + ++ F ++D G Sbjct: 11 SVLIAGRPNVGKSTLFNKLLSSNRSITDEVYGVTRDLVKEVCTVDSYKFYLIDAGGFTLL 70 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 ++ +++ + ++ ++ LIL ++D + D+ + LRK + I++V NK+D+ Sbjct: 71 RD-ELSRIVVNKVISLLDSIDLILLVLDVNEMLLE-DYELIEKLRKYSDKIVLVLNKIDS 128 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + YE L FK+ +SA H G + L +IF + Sbjct: 129 NHKEVLTYEFQKLGFKKSFLVSATHGKGINSL-----RIFLK------------------ 165 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 + + SE + VK I ++G+PN GKSTLIN L G + +G TRD + Sbjct: 166 NSVGKLASEDNTDVK-------IGIIGKPNSGKSTLINFLAGDEVSIVSPIAGTTRDFIK 218 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + E+ DTAG+R+ +R+ E +E +V ++++ + + +L+D QD Sbjct: 219 ARFQRNGKIFELIDTAGIRRRARVNELVEHYSVSRALRVIDMVDIVFLLVDVKEELTAQD 278 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 +I G +++ KWD+V K + L+++ P + I IS G Sbjct: 279 KKIAHYATKRGKGIIIVFTKWDLVDSKSGYFEALKSRVKFFFPVLSFSPILKISVHKKVG 338 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNS----WLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 LD+L +++ K + ++ TS LN W++ L N +++KY+TQI + Sbjct: 339 LDNLFKEAIKLKKQLELKMNTSDLNKMLSLWIKDYHL--------NASHKVKYMTQISVN 390 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLR 446 P F++F P SY YL+N +R Sbjct: 391 PVKFILFANKITNFPNSYYNYLVNNIR 417 >gi|315929258|gb|EFV08474.1| small GTP-binding domain protein [Campylobacter jejuni subsp. jejuni 305] Length = 394 Score = 157 bits (396), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 112/382 (29%), Positives = 192/382 (50%), Gaps = 16/382 (4%) Query: 82 EAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQRNFYEIYSLDFKEI 141 E+ +IL+L+D K D L+K PI +V NK+D + + +E + KEI Sbjct: 13 ESDIILYLVDGKLAPDDEDRQFFYSLKKLGKPIALVINKVDNKKDEERAWEFANFGVKEI 72 Query: 142 VEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEESPKENITSEGKSSVKNIS 201 +S H++G EL+ + K +++ +I + + N E E + K + Sbjct: 73 FNLSVTHNVGLDELYEWLEKFLHEEF------LIPDEEENLEDFLEYYEEGKEFQFKEVE 126 Query: 202 K-PLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAG 260 + +R+ +VGR NVGKS+L+N L+ R + S +G T D V+ S K+ IE DTAG Sbjct: 127 QNHIRVGIVGRVNVGKSSLLNALVKQERSVVSSIAGTTIDPVNESVVHKDKVIEFVDTAG 186 Query: 261 MRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLA 320 +RK +I + LE+ + ++ + + + +++LDA F + D RI V V++ Sbjct: 187 IRKRGKI-QGLERFALNRTEKILSHSQIALLVLDAHEGFNELDERIAGLVAKHYLGVIIV 245 Query: 321 LNKWD---MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKL 377 LNKWD M DK +++LR K L I ++ +SG+ L D +L+I + Sbjct: 246 LNKWDKSEMDFDKT--VKELRLDRFKFLAYAPVISVSALSGKRVHVLLD---KILQIFEN 300 Query: 378 WKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESY 437 + +I TS LN+ ++ +P P + + ++ Y Q +PP + P + SY Sbjct: 301 FTQKIQTSKLNTLIENATRAHPLPHDYGKLVKIYYAVQYDLAPPKIALIMNRPKALHFSY 360 Query: 438 KRYLINRLRINFSLSGIPIRMC 459 KRYL N++R F+ G+P+ + Sbjct: 361 KRYLQNQIRKEFNFEGVPLVIA 382 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 40/119 (33%), Positives = 63/119 (52%), Gaps = 1/119 (0%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD-G 63 + IVG NVGKS+L N LVK++ +VV + G T D + + + VDTAGI G Sbjct: 132 VGIVGRVNVGKSSLLNALVKQERSVVSSIAGTTIDPVNESVVHKDKVIEFVDTAGIRKRG 191 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 K + + ++TE ++ + + L ++D+ G D I + K + +IIV NK D Sbjct: 192 KIQGLERFALNRTEKILSHSQIALLVLDAHEGFNELDERIAGLVAKHYLGVIIVLNKWD 250 >gi|71408039|ref|XP_806448.1| small GTP-binding protein [Trypanosoma cruzi strain CL Brener] gi|70870198|gb|EAN84597.1| small GTP-binding protein, putative [Trypanosoma cruzi] Length = 571 Score = 157 bits (396), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 132/478 (27%), Positives = 214/478 (44%), Gaps = 47/478 (9%) Query: 5 IAIVGAPNVGKSTLFNRL-----VKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAG 59 +AIVG N GKS+LFN L + + +V + GITRD + G A + G+ F I+DT G Sbjct: 105 VAIVGRMNSGKSSLFNLLSEDPTMPHRKNIVRDFDGITRDSVEGHAQLEGMHFTIIDTPG 164 Query: 60 IADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 + +GK A + + + AI F+ + + + +L+ K +P ++ N Sbjct: 165 MVNGKLVEEAFRTVETADAAI-------FVTSVDEDLHSAEFDLIHYLQLKCMPTFVLVN 217 Query: 120 KMD-------TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPL 172 KMD R+ +R L + SA G L +V+ + Y H + Sbjct: 218 KMDLVPLDEEDRVLER----YNELGLGNAIPFSARRKSGMEMLAAVLEPL----YHIHSM 269 Query: 173 EMIENN-------KRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLG 225 + +EN+ + +ES E I + + +RIA+VGR N GKS+LINRL+G Sbjct: 270 QKVENDWDIEDLAMQGDESAMEEIRDRNCAD-----RFIRIALVGRTNSGKSSLINRLVG 324 Query: 226 YNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGM-RKPSRITESLEQKTVKKSMQSVR 284 + R + TRD V + +K +++ DTAG+ R R + S+ +R Sbjct: 325 FERSRAVDEKNSTRDPVELPCIYKGRKVKLIDTAGLTRNRFRADRDFIGRIHDLSVNEIR 384 Query: 285 TCETTIVLLDATIPF-EKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIK 343 IV+ DAT K D+ ++ SV G +L NKWD V D+ + + K + Sbjct: 385 YAHVVIVVFDATEGHPNKYDMAVLHSVAAEGRPFLLCANKWDAVLDQSATAEAIDFKIKR 444 Query: 344 NLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTI 403 + ++ +S TG L LM L + W R+ + L +K + P Sbjct: 445 QVREVKYSNAVVVSAHTGLNLTLLMDQALLLYDTWNKRVRRAELTRLWRKMEKSVIIPYH 504 Query: 404 FNRYNRLKYITQIQSSPPSFLIFCTFPNK---IPESYKRYLINRLRINFSLSGIPIRM 458 R R ITQ+ + PP+FL+ N +P + + + N + F G+PIR+ Sbjct: 505 VARVGR---ITQVNTRPPTFLLHLQTKNDENTLPRALQEMMKNTIVEEFDFRGVPIRL 559 Score = 43.1 bits (100), Expect = 0.088, Method: Compositional matrix adjust. Identities = 42/175 (24%), Positives = 75/175 (42%), Gaps = 21/175 (12%) Query: 204 LRIAVVGRPNVGKSTLINRL-----LGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDT 258 LR+A+VGR N GKS+L N L + + + + GITRDSV + I DT Sbjct: 103 LRVAIVGRMNSGKSSLFNLLSEDPTMPHRKNIVRDFDGITRDSVEGHAQLEGMHFTIIDT 162 Query: 259 AGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVV 318 GM + K V+++ ++V T + I + + ++ + Sbjct: 163 PGM---------VNGKLVEEAFRTVETADAAIFVTSVDEDLHSAEFDLIHYLQLKCMPTF 213 Query: 319 LALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 + +NK D+V D + ++ ++G S R G+ +++ +VLE Sbjct: 214 VLVNKMDLVP------LDEEDRVLERYNELGLGNAIPFSARRKSGM-EMLAAVLE 261 >gi|203284418|ref|YP_002222158.1| GTP-binding protein [Borrelia duttonii Ly] gi|203287952|ref|YP_002222967.1| GTP-binding protein [Borrelia recurrentis A1] gi|201083861|gb|ACH93452.1| GTP-binding protein [Borrelia duttonii Ly] gi|201085172|gb|ACH94746.1| GTP-binding protein [Borrelia recurrentis A1] Length = 440 Score = 156 bits (395), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 120/447 (26%), Positives = 212/447 (47%), Gaps = 44/447 (9%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 ++ IVG PNVGKSTLFN+L+ ++ G+TRD + IN F ++D G Sbjct: 13 SVLIVGRPNVGKSTLFNKLLSSNRSITNEVYGVTRDLVREICKINSYKFYLIDAGGFTLL 72 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 K+ +++ + ++ ++ LIL ++D I D+ + LRK + ++++ NK+D+ Sbjct: 73 KD-ELSQVVVNKVIGLLDSVDLILLVLDVNE-ILLEDYELIDRLRKYSDKVVLILNKVDS 130 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + YE L F++ +SA H G ++L +IF + + + Sbjct: 131 SHKEVLAYEFQKLGFRKSFLVSATHGKGINDL-----RIFLR------------DSVGKL 173 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 S E+I ++I ++G+PN GKSTL+N L G + S +G TRD + Sbjct: 174 SDDEHI-------------DVKIGIIGKPNSGKSTLVNFLSGDEVSIVSSMAGTTRDFIK 220 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + + E+ DTAG+R+ +RI E +E +V ++++ + + +L+D QD Sbjct: 221 AKFQRNSKTFELIDTAGIRRRARINEIIEHYSVSRALRVIDMVDVVFLLVDVNEDLTSQD 280 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 +I G +++ KWD+V + + ++ + P + I IS G Sbjct: 281 KKIAHYAAKRGKGIIIVFTKWDLVKYRSGYFEAVKNRVKFFFPVLNFSPILKISVHNRMG 340 Query: 364 LDDLMVSVLEINKLWKTRITTS----YLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 LD+L +++ + +I TS LN W++ L N ++KYITQI + Sbjct: 341 LDNLFKETIKLKEQLDLKINTSDLNKMLNLWVKDYHL--------NSSYKVKYITQISVN 392 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLR 446 P F++F P SY YL+N +R Sbjct: 393 PIKFILFANKITNFPNSYYNYLVNNIR 419 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 43/131 (32%), Positives = 66/131 (50%), Gaps = 7/131 (5%) Query: 195 SSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIE 254 S ++N S L +VGRPNVGKSTL N+LL NR +T G+TRD V ++ Sbjct: 6 SKIQNYSSVL---IVGRPNVGKSTLFNKLLSSNRSITNEVYGVTRDLVREICKINSYKFY 62 Query: 255 IFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTG 314 + D G + + + L Q V K + + + + +++LD +D ++D + Sbjct: 63 LIDAGGF---TLLKDELSQVVVNKVIGLLDSVDLILLVLDVN-EILLEDYELIDRLRKYS 118 Query: 315 HAVVLALNKWD 325 VVL LNK D Sbjct: 119 DKVVLILNKVD 129 >gi|329904161|ref|ZP_08273691.1| GTP-binding protein EngA [Oxalobacteraceae bacterium IMCC9480] gi|327548117|gb|EGF32835.1| GTP-binding protein EngA [Oxalobacteraceae bacterium IMCC9480] Length = 340 Score = 156 bits (394), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 99/349 (28%), Positives = 169/349 (48%), Gaps = 26/349 (7%) Query: 52 FNIVDTAGIADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKN 111 F ++DT G I +M QT A+ EA +++F++D + G+TP+D IT FLRK Sbjct: 6 FLVIDTGGFEPVAKEGIMHEMAKQTRQAVAEADMVIFIVDGRQGMTPHDKTITDFLRKSG 65 Query: 112 IPIIIVSNKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHP 171 +++V NK + + Y L + ISA H G +L Sbjct: 66 RQVMLVVNKAEGMRYSAVTADFYELGMGDPYVISAAHGDGVMDL---------------- 109 Query: 172 LEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLT 231 +E N ++ E + ++ K +RIA+VGRPNVGKST++N LLG R++ Sbjct: 110 VEEALNLALAQKPVDEEVAV-------DLGKAIRIAIVGRPNVGKSTMVNTLLGEERVIA 162 Query: 232 GSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIV 291 G TRDS+ I + + DTAG+R+ ++ E++E+ +V K++QS+ ++ Sbjct: 163 FDMPGTTRDSIEIPFERSGQQYTLIDTAGIRRRGKVFEAIEKFSVVKTLQSISEANVVLL 222 Query: 292 LLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDI 351 LLDA +QD I + +G A+V+ +NKWD ++ +++ + L + Sbjct: 223 LLDAQQDISEQDAHIAGFILESGRALVVGVNKWDGLTSSRR--DEIKIDLDRKLDFLSFA 280 Query: 352 YINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLN-SWLQKTQLQNP 399 + IS G+D LM S+ + ++T L + ++ + Q P Sbjct: 281 KFHYISALKATGVDQLMKSINSAYAAAMSDLSTPKLTRALIEAVEHQQP 329 Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 42/126 (33%), Positives = 70/126 (55%), Gaps = 2/126 (1%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKST+ N L+ ++ + + PG TRD + +G + ++DTAGI Sbjct: 137 IAIVGRPNVGKSTMVNTLLGEERVIAFDMPGTTRDSIEIPFERSGQQYTLIDTAGIRRRG 196 Query: 65 NC--SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 +I K +T +I+EA+++L L+D++ I+ D I F+ + +++ NK D Sbjct: 197 KVFEAIEKFSVVKTLQSISEANVVLLLLDAQQDISEQDAHIAGFILESGRALVVGVNKWD 256 Query: 123 TRIAQR 128 + R Sbjct: 257 GLTSSR 262 >gi|325116849|emb|CBZ52402.1| putative small GTP-binding protein [Neospora caninum Liverpool] Length = 917 Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 85/278 (30%), Positives = 154/278 (55%), Gaps = 16/278 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +AV+GRPN GKSTL+N LL R++ SQ G T D+V W ++ HP + DTAG+ + Sbjct: 605 VAVIGRPNAGKSTLVNSLLQEERMVVDSQPGTTTDAVGTLWTFQGHPFRLIDTAGVTRGW 664 Query: 266 RITES-LEQKTVKKSMQSVRTCETTIVLLDATI------PFEKQDLRIVD-SVFNTGHAV 317 ++ + L + ++++++R + I+ +DA++ P +L + + G + Sbjct: 665 KMRHTDLLLEAGLQTLRNIRNAQVCILCIDASLARDTGQPISSHELALAHLASEKEGRCL 724 Query: 318 VLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINT-----ISGRTGEGLDDLMVSVL 372 + + KWD+V + N + LR + ++ L Q G ++ ++ + G+ ++ LM ++ Sbjct: 725 AVCVTKWDLVPE--NEREKLRREILERL-QTGLGHLKGCPVVFVAAKYGQNVETLMTKIM 781 Query: 373 EINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFLIFCTFPNK 432 + + W RI TS LNSWL++ L+ PPP ++KY+TQ+++ PP+F+ + N Sbjct: 782 VLYRRWNARIPTSKLNSWLREFVLRWPPPWRLGSKCQVKYVTQVKARPPTFVAWSNVYNT 841 Query: 433 IPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 P Y R L N +R FSL+G P+R+ +++ P K Sbjct: 842 FPVHYLRQLTNTMREEFSLAGTPLRLILRTTAMPAPGK 879 Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 41/122 (33%), Positives = 64/122 (52%), Gaps = 19/122 (15%) Query: 5 IAIVGAPNVGKSTLFNRLV----------------KKKMAVVGNHPGITRDRLYGQAIIN 48 + +VG PNVGKS+LFNRL+ + + A+V G +RDR +A+ Sbjct: 32 VVLVGRPNVGKSSLFNRLISGTRGHAASSPFAPLKRLQQAIVSPQAGTSRDRKEARAVFG 91 Query: 49 GVIFNIVDTAGIADGKN---CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITS 105 G+ +VDT G+ D + C++ M Q A+ +A +LFLID+ G+TP D ++ Sbjct: 92 GLQLLLVDTGGLEDTETTEACALLTNMRKQVRFALRDADSVLFLIDATEGVTPVDVLLSR 151 Query: 106 FL 107 L Sbjct: 152 LL 153 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 30/94 (31%), Positives = 50/94 (53%), Gaps = 3/94 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + +A++G PN GKSTL N L++++ VV + PG T D + G F ++DTAG+ Sbjct: 602 VINVAVIGRPNAGKSTLVNSLLQEERMVVDSQPGTTTDAVGTLWTFQGHPFRLIDTAGVT 661 Query: 62 DG---KNCSIAKQMNDQTELAINEAHLILFLIDS 92 G ++ + + QT I A + + ID+ Sbjct: 662 RGWKMRHTDLLLEAGLQTLRNIRNAQVCILCIDA 695 Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust. Identities = 33/116 (28%), Positives = 55/116 (47%), Gaps = 25/116 (21%) Query: 202 KPLRIAVVGRPNVGKSTLINRLLGYNRLLTGS----------------QSGITRDSVSIS 245 +PL++ +VGRPNVGKS+L NRL+ R S Q+G +RD Sbjct: 28 RPLKVVLVGRPNVGKSSLFNRLISGTRGHAASSPFAPLKRLQQAIVSPQAGTSRDRKEAR 87 Query: 246 WNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQ-----SVRTCETTIVLLDAT 296 + + + DT G+ TE+ E + +M+ ++R ++ + L+DAT Sbjct: 88 AVFGGLQLLLVDTGGLED----TETTEACALLTNMRKQVRFALRDADSVLFLIDAT 139 >gi|221505263|gb|EEE30917.1| GTP-binding protein engA, putative [Toxoplasma gondii VEG] Length = 1105 Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 78/273 (28%), Positives = 153/273 (56%), Gaps = 10/273 (3%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 + +A++GRPNVGKSTL+N LL R++ ++ G T D+V W ++ HP + DTAG+ + Sbjct: 791 IHVAIIGRPNVGKSTLVNSLLQEERMVVDNRPGTTTDAVGTLWKFQGHPFRLIDTAGVTR 850 Query: 264 PSRITES-LEQKTVKKSMQSVRTCETTIVLLDATI------PFEKQDLRIVD-SVFNTGH 315 ++ + L + ++++++R + I+ +DA++ P +L + + G Sbjct: 851 GWKMRHTDLLLEAGLQTLRNIRNSQVCILCIDASLARDTGQPISSHELALAHLASEKEGR 910 Query: 316 AVVLALNKWDMV--SDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 + + + KWD+V +++ L +++ + L + + ++ + G+ ++ LM ++ Sbjct: 911 CLAVCVTKWDLVPENEREKLRREILERLQSGLGHLKGCPVVFVAAKYGQNVETLMTKIMV 970 Query: 374 INKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKI 433 + + W RI TS LNSWL++ L+ PPP ++KY+TQ+++ PP+F+ + N Sbjct: 971 LYRRWNARIPTSKLNSWLREFVLRWPPPWRLGSKCQVKYMTQVKARPPTFVAWSNVYNTF 1030 Query: 434 PESYKRYLINRLRINFSLSGIPIRMCFQSSKNP 466 P Y R L N +R FSL+G P+R+ +++ P Sbjct: 1031 PVHYLRQLTNTMREEFSLTGTPLRLILRTTAMP 1063 Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 40/106 (37%), Positives = 60/106 (56%), Gaps = 7/106 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + +VG PNVGKS+LFNRL+ +V G +RDR +A+ G+ +VDT G+ D + Sbjct: 253 VVLVGRPNVGKSSLFNRLI----TIVSPQAGTSRDRKEARAVFGGLQLLLVDTGGLEDTE 308 Query: 65 N---CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFL 107 C + M Q A+ +A +LFLID+ G+TP D ++ L Sbjct: 309 TTEACELLINMRKQVRFALKDADCVLFLIDATEGVTPVDILLSRLL 354 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 32/94 (34%), Positives = 51/94 (54%), Gaps = 3/94 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + +AI+G PNVGKSTL N L++++ VV N PG T D + G F ++DTAG+ Sbjct: 790 VIHVAIIGRPNVGKSTLVNSLLQEERMVVDNRPGTTTDAVGTLWKFQGHPFRLIDTAGVT 849 Query: 62 DG---KNCSIAKQMNDQTELAINEAHLILFLIDS 92 G ++ + + QT I + + + ID+ Sbjct: 850 RGWKMRHTDLLLEAGLQTLRNIRNSQVCILCIDA 883 Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust. Identities = 31/99 (31%), Positives = 53/99 (53%), Gaps = 13/99 (13%) Query: 203 PLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMR 262 PL++ +VGRPNVGKS+L NRL+ + Q+G +RD + + + DT G+ Sbjct: 250 PLKVVLVGRPNVGKSSLFNRLI----TIVSPQAGTSRDRKEARAVFGGLQLLLVDTGGLE 305 Query: 263 KPSRITESLE-----QKTVKKSMQSVRTCETTIVLLDAT 296 + TE+ E +K V+ +++ + + L+DAT Sbjct: 306 D-TETTEACELLINMRKQVRFALKDA---DCVLFLIDAT 340 >gi|237836573|ref|XP_002367584.1| small GTP-binding protein, putative [Toxoplasma gondii ME49] gi|211965248|gb|EEB00444.1| small GTP-binding protein, putative [Toxoplasma gondii ME49] Length = 1105 Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 78/273 (28%), Positives = 153/273 (56%), Gaps = 10/273 (3%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 + +A++GRPNVGKSTL+N LL R++ ++ G T D+V W ++ HP + DTAG+ + Sbjct: 791 IHVAIIGRPNVGKSTLVNSLLQEERMVVDNRPGTTTDAVGTLWRFQGHPFRLIDTAGVTR 850 Query: 264 PSRITES-LEQKTVKKSMQSVRTCETTIVLLDATI------PFEKQDLRIVD-SVFNTGH 315 ++ + L + ++++++R + I+ +DA++ P +L + + G Sbjct: 851 GWKMRHTDLLLEAGLQTLRNIRNSQVCILCIDASLARDTGQPISSHELALAHLASEKEGR 910 Query: 316 AVVLALNKWDMV--SDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 + + + KWD+V +++ L +++ + L + + ++ + G+ ++ LM ++ Sbjct: 911 CLAVCVTKWDLVPENEREKLRREILERLQSGLGHLKGCPVVFVAAKYGQNVETLMTKIMV 970 Query: 374 INKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKI 433 + + W RI TS LNSWL++ L+ PPP ++KY+TQ+++ PP+F+ + N Sbjct: 971 LYRRWNARIPTSKLNSWLREFVLRWPPPWRLGSKCQVKYMTQVKARPPTFVAWSNVYNTF 1030 Query: 434 PESYKRYLINRLRINFSLSGIPIRMCFQSSKNP 466 P Y R L N +R FSL+G P+R+ +++ P Sbjct: 1031 PVHYLRQLTNTMREEFSLAGTPLRLILRTTAMP 1063 Score = 80.1 bits (196), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 40/106 (37%), Positives = 60/106 (56%), Gaps = 7/106 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + +VG PNVGKS+LFNRL+ +V G +RDR +A+ G+ +VDT G+ D + Sbjct: 253 VVLVGRPNVGKSSLFNRLI----TIVSPQAGTSRDRKEARAVFGGLQLLLVDTGGLEDTE 308 Query: 65 N---CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFL 107 C + M Q A+ +A +LFLID+ G+TP D ++ L Sbjct: 309 TTEACELLINMRKQVRFALKDADCVLFLIDATEGVTPVDILLSRLL 354 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 32/94 (34%), Positives = 51/94 (54%), Gaps = 3/94 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + +AI+G PNVGKSTL N L++++ VV N PG T D + G F ++DTAG+ Sbjct: 790 VIHVAIIGRPNVGKSTLVNSLLQEERMVVDNRPGTTTDAVGTLWRFQGHPFRLIDTAGVT 849 Query: 62 DG---KNCSIAKQMNDQTELAINEAHLILFLIDS 92 G ++ + + QT I + + + ID+ Sbjct: 850 RGWKMRHTDLLLEAGLQTLRNIRNSQVCILCIDA 883 Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust. Identities = 31/99 (31%), Positives = 53/99 (53%), Gaps = 13/99 (13%) Query: 203 PLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMR 262 PL++ +VGRPNVGKS+L NRL+ + Q+G +RD + + + DT G+ Sbjct: 250 PLKVVLVGRPNVGKSSLFNRLI----TIVSPQAGTSRDRKEARAVFGGLQLLLVDTGGLE 305 Query: 263 KPSRITESLE-----QKTVKKSMQSVRTCETTIVLLDAT 296 + TE+ E +K V+ +++ + + L+DAT Sbjct: 306 D-TETTEACELLINMRKQVRFALKDA---DCVLFLIDAT 340 >gi|221483987|gb|EEE22291.1| GTP-binding protein enga, putative [Toxoplasma gondii GT1] Length = 1125 Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 78/273 (28%), Positives = 153/273 (56%), Gaps = 10/273 (3%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 + +A++GRPNVGKSTL+N LL R++ ++ G T D+V W ++ HP + DTAG+ + Sbjct: 811 IHVAIIGRPNVGKSTLVNSLLQEERMVVDNRPGTTTDAVGTLWRFQGHPFRLIDTAGVTR 870 Query: 264 PSRITES-LEQKTVKKSMQSVRTCETTIVLLDATI------PFEKQDLRIVD-SVFNTGH 315 ++ + L + ++++++R + I+ +DA++ P +L + + G Sbjct: 871 GWKMRHTDLLLEAGLQTLRNIRNSQVCILCIDASLARDTGQPISSHELALAHLASEKEGR 930 Query: 316 AVVLALNKWDMV--SDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 + + + KWD+V +++ L +++ + L + + ++ + G+ ++ LM ++ Sbjct: 931 CLAVCVTKWDLVPENEREKLRREILERLQSGLGHLKGCPVVFVAAKYGQNVETLMTKIMV 990 Query: 374 INKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKI 433 + + W RI TS LNSWL++ L+ PPP ++KY+TQ+++ PP+F+ + N Sbjct: 991 LYRRWNARIPTSKLNSWLREFVLRWPPPWRLGSKCQVKYMTQVKARPPTFVAWSNVYNTF 1050 Query: 434 PESYKRYLINRLRINFSLSGIPIRMCFQSSKNP 466 P Y R L N +R FSL+G P+R+ +++ P Sbjct: 1051 PVHYLRQLTNTMREEFSLAGTPLRLILRTTAMP 1083 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 41/122 (33%), Positives = 63/122 (51%), Gaps = 19/122 (15%) Query: 5 IAIVGAPNVGKSTLFNRLV----------------KKKMAVVGNHPGITRDRLYGQAIIN 48 + +VG PNVGKS+LFNRL+ + + A+V G +RDR +A+ Sbjct: 253 VVLVGRPNVGKSSLFNRLISGTRGNSTSSPFAPLKRLQQAIVSPQAGTSRDRKEARAVFG 312 Query: 49 GVIFNIVDTAGIADGKN---CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITS 105 G+ +VDT G+ D + C + M Q A+ +A +LFLID+ G+TP D ++ Sbjct: 313 GLQLLLVDTGGLEDTETTEACELLINMRKQVRFALKDADCVLFLIDATEGVTPVDILLSR 372 Query: 106 FL 107 L Sbjct: 373 LL 374 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 32/94 (34%), Positives = 51/94 (54%), Gaps = 3/94 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + +AI+G PNVGKSTL N L++++ VV N PG T D + G F ++DTAG+ Sbjct: 810 VIHVAIIGRPNVGKSTLVNSLLQEERMVVDNRPGTTTDAVGTLWRFQGHPFRLIDTAGVT 869 Query: 62 DG---KNCSIAKQMNDQTELAINEAHLILFLIDS 92 G ++ + + QT I + + + ID+ Sbjct: 870 RGWKMRHTDLLLEAGLQTLRNIRNSQVCILCIDA 903 Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 54/115 (46%), Gaps = 25/115 (21%) Query: 203 PLRIAVVGRPNVGKSTLINRLLGYNR----------------LLTGSQSGITRDSVSISW 246 PL++ +VGRPNVGKS+L NRL+ R + Q+G +RD Sbjct: 250 PLKVVLVGRPNVGKSSLFNRLISGTRGNSTSSPFAPLKRLQQAIVSPQAGTSRDRKEARA 309 Query: 247 NWKNHPIEIFDTAGMRKPSRITESLE-----QKTVKKSMQSVRTCETTIVLLDAT 296 + + + DT G+ + TE+ E +K V+ +++ + + L+DAT Sbjct: 310 VFGGLQLLLVDTGGLED-TETTEACELLINMRKQVRFALKDA---DCVLFLIDAT 360 >gi|257867660|ref|ZP_05647313.1| GTP-binding protein engA [Enterococcus casseliflavus EC30] gi|257801743|gb|EEV30646.1| GTP-binding protein engA [Enterococcus casseliflavus EC30] Length = 234 Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 88/259 (33%), Positives = 136/259 (52%), Gaps = 31/259 (11%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAIVG PNVGKST+FNR+ +++++V + PG+TRDR+Y G F+++DT GI D Sbjct: 5 TIAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYATGEWLGREFSVIDTGGI-DL 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + Q+ Q E+AI+EA +I+F+ ++ G+T D + L K N P+I+ NK+D Sbjct: 64 SDEPFMDQIKHQAEIAIDEADVIVFITSAREGVTDADELVARLLYKSNKPVILAVNKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + YE Y L + IS H LG ++ K F N+ EE Sbjct: 124 PEMRTDIYEFYGLGLGDPYPISGSHGLGIGDVLDEAVKHF-------------TNEAEEE 170 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 ++ +++GRPNVGKS+LIN +LG R++ G TRD++ Sbjct: 171 D----------------DSIIKFSLIGRPNVGKSSLINAILGEERVIVSDIEGTTRDAID 214 Query: 244 ISWNWKN-HPIEIFDTAGM 261 + ++ + DTAGM Sbjct: 215 THFTSESGQEFTMIDTAGM 233 Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 1/60 (1%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAII-NGVIFNIVDTAGI 60 I +++G PNVGKS+L N ++ ++ +V + G TRD + +G F ++DTAG+ Sbjct: 174 IIKFSLIGRPNVGKSSLINAILGEERVIVSDIEGTTRDAIDTHFTSESGQEFTMIDTAGM 233 >gi|32491325|ref|NP_871579.1| hypothetical protein WGLp576 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|25166532|dbj|BAC24722.1| b2511 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 456 Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 135/477 (28%), Positives = 230/477 (48%), Gaps = 37/477 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 ++I+G N GKSTLFN+L KK+ A+V PG T DR Y I F +DT I Sbjct: 5 VSIIGKQNSGKSTLFNKLTKKRRALVSKDPGFTSDRQYLLRIWKKRKFIFIDTPSIYLIN 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDH-AITSFLRKKNIPIIIVSNKMDT 123 S + N+Q+ +AI E+H+IL +I ++ + +H +I +FL++ ++ N D Sbjct: 65 KKS---KFNNQSIIAIEESHVILLVIRYESYGSLDNHLSIIAFLKRNKKNFFVILNLDDN 121 Query: 124 RIAQRNFYE-IYSLDFKEIVEIS--AEHDLGTSELHSVIFKIFKQ-KYPNHPLEMIENNK 179 NF + IY L +I ++ E++ KIFK YP H E+NK Sbjct: 122 FNKNYNFTDKIYFLGIDKICYLNFLKENNFK---------KIFKNILYPEHLSSFKESNK 172 Query: 180 RNEESPKENITSEGKSSVKNIS-------KPLRIAVVGRPNVGKSTLINRLLGYNRLLTG 232 N+ S S++KN++ K +IA++GRPN GKSTL+N +L NR Sbjct: 173 NNKVS----------SAIKNLTLNKIEMDKYPKIAIIGRPNSGKSTLMNCILRQNRSTVS 222 Query: 233 SQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVL 292 + G T+D + ++ K DTAG+ K + + +K ++ ++ + +I++ Sbjct: 223 NSPGTTKDVLYSLYSNKEKTYLFIDTAGLVKKKNFVH-INKSVIKNTLNVIKKIDVSILV 281 Query: 293 LDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIY 352 +D+ + KQDL ++ + ++++A+NK D++S K + + + I Sbjct: 282 IDSCVGITKQDLFFLNYILKYNKSLIIAVNKLDLISKKNKKEIKEKIIKKISFFKF--IK 339 Query: 353 INTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKY 412 I+ IS G+++L+ S+ K + TS L L+K N PP + ++LKY Sbjct: 340 IHFISAICSFGINNLLYSIKATYKNKLLKFETSKLTRILRKATFNNQPPMLNGIRSKLKY 399 Query: 413 ITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIK 469 +P +I +P++Y YL ++ G +++ F SS NPY K Sbjct: 400 AHPGGYNPLVIVIHGIKVISLPKNYISYLKKFFIKELNIIGTSLKIKFISSINPYSK 456 Score = 37.7 bits (86), Expect = 4.5, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 8/90 (8%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 L ++++G+ N GKSTL N+L R L G T D + WK DT + Sbjct: 3 LIVSIIGKQNSGKSTLFNKLTKKRRALVSKDPGFTSDRQYLLRIWKKRKFIFIDTPSIY- 61 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLL 293 L K K + QS+ E + V+L Sbjct: 62 -------LINKKSKFNNQSIIAIEESHVIL 84 >gi|1813480|gb|AAB41682.1| putative GTPase [Campylobacter jejuni] Length = 383 Score = 150 bits (378), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 115/388 (29%), Positives = 199/388 (51%), Gaps = 18/388 (4%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 +I ++G PNVGKS+LFNR+ ++++A+ + G TRD Q I+ ++D+ G+ + Sbjct: 3 SIILIGKPNVGKSSLFNRMARQRIAITSDISGTTRDTNKTQIHIHSKKAMLIDSGGLDE- 61 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + + K + T E+ +IL+L+D K D L+K PI +V NK+D Sbjct: 62 -SDELFKNVKKNTLKVAKESDIILYLVDGKLAPDDEDRQFFYSLKKLGKPIALVVNKVDN 120 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + + +E + KEI +S H++G EL+ + K +++ +I + + N E Sbjct: 121 KKDEERAWEFANFGVKEIFNLSVTHNVGLDELYEWLEKFLHEEF------LIPDEEENLE 174 Query: 184 SPKENITSEGKSSVKNISK-PLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 E+ + K + + +R+ +VGR NVGKS+L+N L+ R + S +G T D V Sbjct: 175 DFLEHYEEGKEFQFKEVDQNHIRVGIVGRVNVGKSSLLNALVKQERSVVSSIAGTTIDPV 234 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 + S K+ IE DTAG+RK +I + LE+ + ++ + + + +++LDA F + Sbjct: 235 NESVVHKDKVIEFVDTAGIRKRGKI-QGLERFALNRTEKILSHSQIALLVLDAHEGFNEL 293 Query: 303 DLRIVDSVFNTGHAVVLALNKWD---MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGR 359 D RI V V++ LNKWD M DK +++L K L I ++ +SG+ Sbjct: 294 DERIAGLVAKHYLGVIIVLNKWDKSEMDFDK--TVKELHLDRFKFLAYAPVISVSALSGK 351 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYL 387 L D +L+I + + +I TS L Sbjct: 352 RVHVLLD---KILQIFENFTQKIQTSKL 376 >gi|237800048|ref|ZP_04588509.1| GTP-binding protein Der [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022903|gb|EGI02960.1| GTP-binding protein Der [Pseudomonas syringae pv. oryzae str. 1_6] Length = 222 Score = 149 bits (376), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 85/231 (36%), Positives = 135/231 (58%), Gaps = 9/231 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ IA+VG PNVGKST+FNRL + + A+VG+ G+TRDR YG+A G + ++DT GI Sbjct: 1 MVPVIALVGRPNVGKSTMFNRLTRTRDAIVGDLSGLTRDRQYGEAKWQGRSYILIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + G + ++M +Q+ LAI EA ++LFL+D++AG T D I LRK+N +V+NK Sbjct: 61 S-GDEHGMDEKMAEQSLLAIEEADVVLFLVDARAGYTAADQMIGEHLRKRNKRSYVVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D E + + + ++ H G S++ + + F + + +E Sbjct: 120 IDNIDENLARAEFSPMGLGDAIPVAGAHGRGISQMLEIALREFPRDEDDLEEGEVEEVAE 179 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLT 231 +E+ + SE K +K IA++GRPNVGKSTL+NR+LG +R++ Sbjct: 180 GQEAKRIPGPSE-KDGIK-------IAIIGRPNVGKSTLVNRMLGEDRVIV 222 Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 37/126 (29%), Positives = 61/126 (48%), Gaps = 3/126 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA+VGRPNVGKST+ NRL + G SG+TRD W+ + DT G+ S Sbjct: 5 IALVGRPNVGKSTMFNRLTRTRDAIVGDLSGLTRDRQYGEAKWQGRSYILIDTGGI---S 61 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +++K ++S+ ++ + + L+DA + D I + + + NK D Sbjct: 62 GDEHGMDEKMAEQSLLAIEEADVVLFLVDARAGYTAADQMIGEHLRKRNKRSYVVANKID 121 Query: 326 MVSDKL 331 + + L Sbjct: 122 NIDENL 127 >gi|206901733|ref|YP_002250881.1| ribosome-associated GTPase EngA [Dictyoglomus thermophilum H-6-12] gi|206740836|gb|ACI19894.1| ribosome-associated GTPase EngA [Dictyoglomus thermophilum H-6-12] Length = 380 Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 110/413 (26%), Positives = 204/413 (49%), Gaps = 47/413 (11%) Query: 54 IVDTAGIADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIP 113 ++D+AG G N ++ + ++ + IN + +ILF++D ++ +T D+ LRK Sbjct: 1 MIDSAGW--GLNDDLSHLVQEKIQEVINISDIILFVLDGRSELTALDYEFADILRKSGKK 58 Query: 114 IIIVSNKMDTRIAQRNFYEIYS-LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPL 172 +I+V NKM+ RI + + ++ L E ISA H EL +I + Sbjct: 59 VILVVNKMEGRIDKEEYLAPFTTLGLGEPFPISALHKQNLYELLDLIISLLPP------- 111 Query: 173 EMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTG 232 EES E+ + +R A VGRPN GKS+L+N L+G +R + Sbjct: 112 --------TEESHTED-------------EFIRFAFVGRPNSGKSSLLNALIGKDRSIVS 150 Query: 233 SQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVL 292 G TRD+V + W + I DT G+R+P+R+ E LE+ +V+K++Q++R + +++ Sbjct: 151 EIPGTTRDAVDLVWEFNGKKYIIVDTPGLRRPARVEEGLEELSVRKTLQTIRKIDVAVMV 210 Query: 293 LDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIY 352 +D ++ +Q+ RI+ + + G + ++ NK D+ L++ R + K +PQI + Sbjct: 211 IDLSVGVREQEKRILHYIEDKGKSCLIVFNKTDLFPS----LKE-RREFEKIVPQILQPF 265 Query: 353 ----INTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYN 408 S + ++ V ++ +L RI TS +N +++ + T F++ Sbjct: 266 DYFPFIFTSAIRNYNVKKILPWVDKLFELRNMRIPTSQVNRAIEEALSK----TNFSKKG 321 Query: 409 RL---KYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 ++ Y TQ+ +PP+F+ F P + ++ +Y LR F G PI++ Sbjct: 322 KILKVYYATQVDVAPPTFVFFVNEPEIMNKNVVKYFEKFLRSYFGWIGTPIKI 374 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 56/246 (22%), Positives = 104/246 (42%), Gaps = 21/246 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 A VG PN GKS+L N L+ K ++V PG TRD + NG + IVDT G+ + Sbjct: 124 FAFVGRPNSGKSSLLNALIGKDRSIVSEIPGTTRDAVDLVWEFNGKKYIIVDTPGLR--R 181 Query: 65 NCSIAKQMND----QTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + + + + +T I + + + +ID G+ + I ++ K +IV NK Sbjct: 182 PARVEEGLEELSVRKTLQTIRKIDVAVMVIDLSVGVREQEKRILHYIEDKGKSCLIVFNK 241 Query: 121 MDT--RIAQRNFYE------IYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPL 172 D + +R +E + D+ + SA + ++ + K+F+ + P Sbjct: 242 TDLFPSLKERREFEKIVPQILQPFDYFPFIFTSAIRNYNVKKILPWVDKLFELRNMRIPT 301 Query: 173 EMIENNKRNEESPKENITSEGK------SSVKNISKPLRIAVVGRPNVGKSTLINRLLGY 226 + N E K N + +GK ++ +++ P + V P + ++ + Sbjct: 302 SQV-NRAIEEALSKTNFSKKGKILKVYYATQVDVAPPTFVFFVNEPEIMNKNVVKYFEKF 360 Query: 227 NRLLTG 232 R G Sbjct: 361 LRSYFG 366 >gi|153843824|ref|ZP_01993596.1| GTP-binding protein EngA [Vibrio parahaemolyticus AQ3810] gi|149745287|gb|EDM56538.1| GTP-binding protein EngA [Vibrio parahaemolyticus AQ3810] Length = 286 Score = 146 bits (369), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 90/288 (31%), Positives = 157/288 (54%), Gaps = 8/288 (2%) Query: 86 ILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQRNFYEIYSLDFKEIVEIS 145 +LFL+D +AG+TP D AI + LRK P ++V NK+D A + + L ++ +I+ Sbjct: 1 MLFLVDGRAGLTPADEAIAAHLRKIEKPAMLVVNKIDGIDADAACADFWQLGVDDMYQIA 60 Query: 146 AEHDLG-TSELHSVIFKIFKQ----KYPNHPLEMIENNKRNEESPKENITSEGKSSVKNI 200 A H G T+ L + F + +E + + E +P E E ++ + + Sbjct: 61 AAHGRGVTALLERALAPFFDDLLTSESEEGEIEDLTEFEDAEIAPDEYTEEEAEAEFQRL 120 Query: 201 -SKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 +P+++A++GRPNVGKSTL NR+LG R++ G TRDS+ I I DTA Sbjct: 121 QEQPIKLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVIIDTA 180 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R+ RI E++E+ +V K++++V ++++DA QDL ++ N G ++VL Sbjct: 181 GVRRRGRINETVEKFSVVKTLKAVEDANVVLLVIDARENISDQDLSLLGFALNAGRSIVL 240 Query: 320 ALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDL 367 A+NKWD + +++ ++++ + + L + I+ IS G G+ L Sbjct: 241 AVNKWDGLDNEVK--ENVKKELDRRLGFVDFARIHFISALHGTGVGHL 286 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 53/160 (33%), Positives = 87/160 (54%), Gaps = 9/160 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI-ADG 63 +AI+G PNVGKSTL NR++ ++ VV + PG TRD +Y +G + I+DTAG+ G Sbjct: 127 LAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVIIDTAGVRRRG 186 Query: 64 K-NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK-- 120 + N ++ K +T A+ +A+++L +ID++ I+ D ++ F I++ NK Sbjct: 187 RINETVEKFSVVKTLKAVEDANVVLLVIDARENISDQDLSLLGFALNAGRSIVLAVNKWD 246 Query: 121 -MDTRIAQRNFYEIYS----LDFKEIVEISAEHDLGTSEL 155 +D + + E+ +DF I ISA H G L Sbjct: 247 GLDNEVKENVKKELDRRLGFVDFARIHFISALHGTGVGHL 286 >gi|307103139|gb|EFN51402.1| hypothetical protein CHLNCDRAFT_37436 [Chlorella variabilis] Length = 540 Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 130/480 (27%), Positives = 205/480 (42%), Gaps = 59/480 (12%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 ++ +AIVG PNVGKS LFNR+V +++A+V ++PG+TRDRLY +A F +VDT G+ Sbjct: 100 LLPKVAIVGRPNVGKSALFNRIVGRQVAIVYDYPGVTRDRLYTRAFWGDHEFLLVDTGGL 159 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRK--KNIPIIIVS 118 + K+ + L FL + G T D I ++LR+ N P+I+ Sbjct: 160 MSDAE-KLPKEQQARPFLPAANPACRAFL--PQTGGTSADEEIQAWLRRMHPNKPVILAV 216 Query: 119 NKMDTRI-AQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 NK + A E + E + +SA GT EL + P + E Sbjct: 217 NKCENAAKADLQAAEFWGSGL-EPIAVSAISGSGTGELMERLAAALPP-----PPTLAEA 270 Query: 178 NKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGI 237 R L +A++GRPNVGKS+L+N L+G R + S +G Sbjct: 271 ADR-----------------------LEVAIIGRPNVGKSSLLNALVGEERSIVSSMAGT 307 Query: 238 TRDSVSISWNWKNHP-IEIFDTAGMRKPSRITESLEQKTVKKSMQSV---RTCETTIVLL 293 TRD++ + ++ DTAG+RK + I S + + Sbjct: 308 TRDAIDTDLVLTDGSKFKLVDTAGVRKRTAIAGSKDGAEAGRPWFRCGWGAAALAGARAG 367 Query: 294 DATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKA-------IKNLP 346 +P Q R ++ LLQ R A + +L Sbjct: 368 ARAVPGCGQRPRNTCPPRAPRRTLLCP------------LLQACRATAPNLTPFLLSSLR 415 Query: 347 QIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQ-LQNPPPTIFN 405 I I IS +TG+ + ++ + + RITTS LN L++ Q + P T Sbjct: 416 PIEWANIVFISAKTGQRVKRVLDAAAAAAAEHRRRITTSTLNLVLKEAQGWRMSPTTGSG 475 Query: 406 RYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 R R+ Y TQ + PP+F++FC P YK+++ + R N G P+R+ ++ + Sbjct: 476 RRGRIYYGTQAGTKPPTFVLFCNDAKLFPPDYKKFMERQFRENVGFPGSPLRLYWRGKQG 535 >gi|332294983|ref|YP_004436906.1| ribosome-associated GTPase EngA [Thermodesulfobium narugense DSM 14796] gi|332178086|gb|AEE13775.1| ribosome-associated GTPase EngA [Thermodesulfobium narugense DSM 14796] Length = 425 Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 131/466 (28%), Positives = 227/466 (48%), Gaps = 57/466 (12%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAII---NGVIFNIVDTAGIA 61 + + G NVGKSTLFNRL+K+ ++V + PG TRD + + I + +VD G+ Sbjct: 7 VVLAGRANVGKSTLFNRLLKQSYSMVSSVPGTTRD--FHEGIFRYTDSTAITLVDLPGVL 64 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 +G S + ++++ I ++ LI+ +++++ G+T D I +LRK N P+I+V NK Sbjct: 65 EGDYLS--ELAFEKSKKIIEKSDLIVQVVEAR-GLTSTDEEIALYLRKFNKPMILVVNKC 121 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF-KIFKQKYPNHPLEMIENNKR 180 + R+ +F YSL +IVEISA H L +L +IF KI QK+ Sbjct: 122 EGRVDLSDF---YSLGIGDIVEISAYHGLNVYQLEDLIFSKITGQKF------------- 165 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 E P P+ + G PNVGKS+L N +L R + +G TR+ Sbjct: 166 --EEP----------------TPIVFGIFGAPNVGKSSLANAILEEERFIVSDFAGTTRE 207 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 V+ S+ + D+AG+++ + L+ +V +S+ +++ I+++DA+ Sbjct: 208 VVAKSFRRLGKSWLLLDSAGIKRRKSYDKELDGLSVSRSISAMK-APMGILVIDASRLVT 266 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMV-SDKLNLLQDLRTKAIKNLPQIGDIYINTISGR 359 QD RI + A ++ LNK D++ L ++ + +K+ + D + S Sbjct: 267 HQDKRIASLMIERTGASIIFLNKKDLIPHSSLGVVYN----NVKSDLKFMDSPLIFGSAL 322 Query: 360 TGEGLDDLMVSVLE-INKLWKTRITTSYLNSWLQ--KTQLQNPPPTIFNRYNRLKYITQI 416 TGE + VLE + LW+ +T+ L+ + + P T+ N+ ++ I Sbjct: 323 TGESVH----LVLENLKDLWEKAMTSYNKKDILEAIRKAVSLRPITVENKTLIIRNIRFE 378 Query: 417 QSSPPSFLIFCTF-PNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 P I + +P+SY RYLIN ++ + + GI +RM F+ Sbjct: 379 SKFPLEIDIKSNVRSDLVPKSYLRYLINTVKKDLDMKGINLRMEFK 424 >gi|291000700|ref|XP_002682917.1| small GTPase [Naegleria gruberi] gi|284096545|gb|EFC50173.1| small GTPase [Naegleria gruberi] Length = 644 Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 86/266 (32%), Positives = 148/266 (55%), Gaps = 16/266 (6%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV---SISWNWKNHPIEIFDTAG 260 +R+A++GR NVGKSTL+N L+G R T S G TRD++ +I+ H + I DTAG Sbjct: 369 MRLAIIGRSNVGKSTLLNHLIGEERTRTSSTPGTTRDTIEVEAINEKTGQHYL-ICDTAG 427 Query: 261 MRKPSRI-TESLEQKTVKKSMQSVRTCETTIVLLDAT-------IPFEKQDLRIVDSVFN 312 +RK T+ +EQ ++K + ++++ +++D T +QDL I V Sbjct: 428 IRKKKHTDTDRIEQMSLKDTYRTIKYANVCCLVVDPTHNISGEGYGLTQQDLDIARMVEK 487 Query: 313 TGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVL 372 G ++V+A NKWDMV + + Q + ++ +L Q+ I + S +TG+ L L+ Sbjct: 488 EGRSLVIACNKWDMVKNPYVVAQQIESQIESSLSQMQGISVVVCSAKTGKNLSLLLKECE 547 Query: 373 EINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFLIFCTFPNK 432 + + W ++I+T LN+++++ P P Y +++YI+Q+ PP+F I T K Sbjct: 548 KSYRKWSSKISTHQLNTFIRQYLETKPIP---QSYPKVRYISQVAIRPPTFCIH-TSNKK 603 Query: 433 IPESYKRYLINRLRINFSLSGIPIRM 458 P +++R +IN +R F L G+P R+ Sbjct: 604 FPTNFERQIINAIRDEFELGGVPFRV 629 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 48/184 (26%), Positives = 90/184 (48%), Gaps = 35/184 (19%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRD--------RLYGQAIINGVIFN--- 53 +AI+G NVGKSTLFN L+ ++ ++V N PG+TRD +L ++ V+F+ Sbjct: 39 VAIIGRENVGKSTLFNSLLGRQHSIVHNSPGVTRDCQEAKTQIKLKYPMNVSEVVFDKKA 98 Query: 54 -----------IVDTAGIADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHA 102 +DT G + + + QT+ +I +++ L + D + G+ +D+ Sbjct: 99 RKRLIKKISCTFIDTPG------ANFMESIIQQTQDSIASSNVALLVTDCRDGLQKWDYH 152 Query: 103 ITSFLRKKNIPIIIVSNKMDTRIAQRNFYEIYSLDFKEI-------VEISAEHDLGTSEL 155 + ++L K IP + + NK D + + + E+ + K + IS+E +G ++ Sbjct: 153 VANYLEMKGIPALHILNKCDGPLMRGDSDELEEVISKNTIPSLGKPIPISSEMKIGMDQI 212 Query: 156 HSVI 159 S I Sbjct: 213 VSAI 216 Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 43/133 (32%), Positives = 64/133 (48%), Gaps = 12/133 (9%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAI--INGVIFNIVDTAG 59 I +AI+G NVGKSTL N L+ ++ + PG TRD + +AI G + I DTAG Sbjct: 368 IMRLAIIGRSNVGKSTLLNHLIGEERTRTSSTPGTTRDTIEVEAINEKTGQHYLICDTAG 427 Query: 60 IADGKNCSIAK--QMN-DQTELAINEAHLILFLID-------SKAGITPYDHAITSFLRK 109 I K+ + QM+ T I A++ ++D G+T D I + K Sbjct: 428 IRKKKHTDTDRIEQMSLKDTYRTIKYANVCCLVVDPTHNISGEGYGLTQQDLDIARMVEK 487 Query: 110 KNIPIIIVSNKMD 122 + ++I NK D Sbjct: 488 EGRSLVIACNKWD 500 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 38/142 (26%), Positives = 62/142 (43%), Gaps = 22/142 (15%) Query: 202 KPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWK-NHPIE----IF 256 K LR+A++GR NVGKSTL N LLG + + G+TRD K +P+ +F Sbjct: 35 KNLRVAIIGRENVGKSTLFNSLLGRQHSIVHNSPGVTRDCQEAKTQIKLKYPMNVSEVVF 94 Query: 257 DTAGMRK-------------PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 D ++ + ES+ Q+T S+ + +++ D +K D Sbjct: 95 DKKARKRLIKKISCTFIDTPGANFMESIIQQT----QDSIASSNVALLVTDCRDGLQKWD 150 Query: 304 LRIVDSVFNTGHAVVLALNKWD 325 + + + G + LNK D Sbjct: 151 YHVANYLEMKGIPALHILNKCD 172 >gi|309775502|ref|ZP_07670502.1| ribosome-associated GTPase EngA [Erysipelotrichaceae bacterium 3_1_53] gi|308916596|gb|EFP62336.1| ribosome-associated GTPase EngA [Erysipelotrichaceae bacterium 3_1_53] Length = 263 Score = 143 bits (360), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 73/254 (28%), Positives = 131/254 (51%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP 264 + V+GRPNVGKS+L+N +L R++ + G TRD++ + + + DTAG+RK Sbjct: 3 KFCVIGRPNVGKSSLVNAVLNQERVIVSNIEGTTRDAIDTPFKREGKEYVVIDTAGIRKR 62 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 ++ ES+E+ +V ++M ++ + +V++D +QD + G V++ NKW Sbjct: 63 GKVYESIEKYSVLRAMSAIERSDVVLVVIDGEKGIREQDKHVAGYAHEAGKGVIIVYNKW 122 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITT 384 D V + + + + I +S + + ++ + E++ RI T Sbjct: 123 DTVEKDEQTMHTIEKEIRAQFLYLSYAPILFVSALKKQRIHTILPVIDEVHDYSVLRIQT 182 Query: 385 SYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINR 444 + LN + QL PPPT + ++ Y +Q+ +PP+F++F P + SYKRYL NR Sbjct: 183 NVLNEVIMDAQLMTPPPTHKGQRLKIYYASQVSVAPPTFVLFVNDPELLHFSYKRYLENR 242 Query: 445 LRINFSLSGIPIRM 458 LR F +G +R+ Sbjct: 243 LREAFGFNGTTLRI 256 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 61/120 (50%), Gaps = 2/120 (1%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 ++G PNVGKS+L N ++ ++ +V N G TRD + G + ++DTAGI Sbjct: 5 CVIGRPNVGKSSLVNAVLNQERVIVSNIEGTTRDAIDTPFKREGKEYVVIDTAGIRKRGK 64 Query: 66 C--SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 SI K + AI + ++L +ID + GI D + + + +IIV NK DT Sbjct: 65 VYESIEKYSVLRAMSAIERSDVVLVVIDGEKGIREQDKHVAGYAHEAGKGVIIVYNKWDT 124 >gi|308370797|ref|ZP_07422773.2| GTP-binding protein engA [Mycobacterium tuberculosis SUMu003] gi|308330810|gb|EFP19661.1| GTP-binding protein engA [Mycobacterium tuberculosis SUMu003] Length = 308 Score = 142 bits (359), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 101/327 (30%), Positives = 155/327 (47%), Gaps = 33/327 (10%) Query: 133 IYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEESPKENITSE 192 ++SL E ISA H G ++L + + E+ ++ Sbjct: 1 MWSLGLGEPHAISAMHGRGVADLLDGVLAALPEV-------------------GESASAS 41 Query: 193 GKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHP 252 G P R+A+VG+PNVGKS+L+N+L G R + +G T D V Sbjct: 42 GG--------PRRVALVGKPNVGKSSLLNKLAGDQRSVVHEAAGTTVDPVDSLIELGGDV 93 Query: 253 IEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFN 312 DTAG+R+ E ++ ++ + E IVL+DA+ P +QDLR++ V Sbjct: 94 WRFVDTAGLRRKVGQASGHEFYASVRTHAAIDSAEVAIVLIDASQPLTEQDLRVISMVIE 153 Query: 313 TGHAVVLALNKWDMV-SDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSV 371 G A+VLA NKWD+V D+ LLQ + + L Q+ IS +TG + L+ ++ Sbjct: 154 AGRALVLAYNKWDLVDEDRRELLQ---REIDRELVQVRWAQRVNISAKTGRAVHKLVPAM 210 Query: 372 LEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFLIFCTFPN 431 + W TRI T LN+WL + PPP + R+ + TQ + PP+F++F T Sbjct: 211 EDALASWDTRIATGPLNTWLTEVTAATPPPVRGGKQPRILFATQATARPPTFVLFTT--G 268 Query: 432 KIPESYKRYLINRLRINFSLSGIPIRM 458 + Y+R+L RLR F G PIR+ Sbjct: 269 FLEAGYRRFLERRLRETFGFDGSPIRV 295 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/152 (28%), Positives = 75/152 (49%), Gaps = 9/152 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD-- 62 +A+VG PNVGKS+L N+L + +VV G T D + + G ++ VDTAG+ Sbjct: 47 VALVGKPNVGKSSLLNKLAGDQRSVVHEAAGTTVDPVDSLIELGGDVWRFVDTAGLRRKV 106 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 G+ + +T AI+ A + + LID+ +T D + S + + +++ NK D Sbjct: 107 GQASGHEFYASVRTHAAIDSAEVAIVLIDASQPLTEQDLRVISMVIEAGRALVLAYNKWD 166 Query: 123 ------TRIAQRNF-YEIYSLDFKEIVEISAE 147 + QR E+ + + + V ISA+ Sbjct: 167 LVDEDRRELLQREIDRELVQVRWAQRVNISAK 198 >gi|322824721|gb|EFZ30032.1| small GTP-binding protein, putative [Trypanosoma cruzi] Length = 450 Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 120/449 (26%), Positives = 198/449 (44%), Gaps = 42/449 (9%) Query: 29 VVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNCSIAKQMNDQTELAINEAHLILF 88 +V + GITRD + G A + G+ F I+DT G+ +GK A + + + AI F Sbjct: 13 IVRDFDGITRDSVEGHAQLEGMHFTIIDTPGMVNGKLVEEAFRTVETADAAI-------F 65 Query: 89 LIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD-------TRIAQRNFYEIYSLDFKEI 141 + + + + +L+ K +P ++ NKMD R+ +R L Sbjct: 66 VTSVDEDLHSAEFDLIHYLQLKCMPAFVLVNKMDLVPLDEEDRVLER----YNELGLGNA 121 Query: 142 VEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN-------KRNEESPKENITSEGK 194 + SA G L +V+ + Y H ++ +EN+ + +ES E I Sbjct: 122 IPFSARRKSGMEMLAAVLEPL----YHIHSMQKVENDWDIEDLAMQGDESAMEEIRDRNC 177 Query: 195 SSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIE 254 + + +RIA+VGR N GKS+LINRL+G+ R + TRD V + +K ++ Sbjct: 178 AD-----RFIRIALVGRTNSGKSSLINRLVGFERSRAVDEKNSTRDPVELPCIYKGRKMK 232 Query: 255 IFDTAGM-RKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPF-EKQDLRIVDSVFN 312 + DTAG+ R R + S+ +R IV+ DAT K D+ ++ SV Sbjct: 233 LIDTAGLTRNRFRADRDFIGRIHDLSVNEIRYAHVVIVVFDATEGHPNKYDMAVLHSVAA 292 Query: 313 TGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVL 372 G +L NKWD V D+ + + K + + ++ +S TG L LM L Sbjct: 293 EGRPFLLCANKWDAVLDQSATAEAIDFKIKRQVREVKYSNAVVVSAHTGLNLTLLMDQAL 352 Query: 373 EINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFLIFCTFPNK 432 + W R+ + L +K + P R R ITQ+ + PP+FL+ N Sbjct: 353 LLYDTWNKRVRRAELTRLWRKMEKSVIIPYHVARVGR---ITQVNTRPPTFLLHLQTKND 409 Query: 433 ---IPESYKRYLINRLRINFSLSGIPIRM 458 +P + + + N + F G+PIR+ Sbjct: 410 ENTLPRALQEMMKNTIVEEFDFRGVPIRL 438 Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 41/139 (29%), Positives = 70/139 (50%), Gaps = 6/139 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG N GKS+L NRLV + + + TRD + I G ++DTAG+ + Sbjct: 184 IALVGRTNSGKSSLINRLVGFERSRAVDEKNSTRDPVELPCIYKGRKMKLIDTAGLTRNR 243 Query: 65 NCSIAKQMNDQTELAINE---AHLILFLIDSKAGI-TPYDHAITSFLRKKNIPIIIVSNK 120 + + +L++NE AH+++ + D+ G YD A+ + + P ++ +NK Sbjct: 244 FRADRDFIGRIHDLSVNEIRYAHVVIVVFDATEGHPNKYDMAVLHSVAAEGRPFLLCANK 303 Query: 121 MDTRIAQRNFYEIYSLDFK 139 D + Q E ++DFK Sbjct: 304 WDAVLDQSATAE--AIDFK 320 >gi|206895297|ref|YP_002247145.1| ribosome-associated GTPase EngA [Coprothermobacter proteolyticus DSM 5265] gi|206737914|gb|ACI16992.1| ribosome-associated GTPase EngA [Coprothermobacter proteolyticus DSM 5265] Length = 425 Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 120/449 (26%), Positives = 203/449 (45%), Gaps = 41/449 (9%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 I+GAPNVGKS+LFNRLV + A+ + PG+TRD L G F +VDT G+ G+ Sbjct: 6 IIGAPNVGKSSLFNRLVGGRKALTYDQPGVTRDYLSHICEWRGRYFELVDTGGLYRGEQ- 64 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 + E+A +A ++LF++D+ ++ ++ I LRK +I+V NKMD Sbjct: 65 DLESFWKRSLEIA-QDADVVLFVVDASEHLSSVEYDIAQDLRKMGKEVIVVGNKMDLLPE 123 Query: 127 QRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEESPK 186 N ++Y+L F ++ +SA + +L +++K ++ +++ K Sbjct: 124 GFN-PDLYNLGFDKVQFVSATTGRNSGDLLDLMWKYLGEE--------------DQDITK 168 Query: 187 ENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISW 246 E++ R++V+GR N GKSTL+NRLLG R+L G T D ++ + Sbjct: 169 EDV-------------EFRVSVIGRTNAGKSTLMNRLLGKERVLVSEMPGTTLDFITETI 215 Query: 247 NWKNHPIEIFDTAGMRKPS-RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLR 305 N K+ +E+ DT G+RK R E VK+ +R + I ++DA++ D Sbjct: 216 NVKDMVVEVTDTPGLRKGDLRRLSVPEMLAVKRLENRLRKQQVLIHVIDASVGLTSLDES 275 Query: 306 IVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLD 365 ++ G + LNK D+ D L + P + + S +D Sbjct: 276 VIRIAEEEGIGYIAVLNKIDLAEDPRKAESILTEAFLDKFPWVDRKAVIAASAEENYNVD 335 Query: 366 DLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFLI 425 V + L + + ++ L T+L P I Y R + Q+ + P + Sbjct: 336 ----KVTDALHLARQDLGITFKPREL--TELIKPLEEIITGY-RFYFALQVSTLPSVVKV 388 Query: 426 FCT---FPNKIPESYKRYLINRLRINFSL 451 F P+ I ++R L + I +L Sbjct: 389 FANKAEMPSNIMTYFRRQLKKSMGIKTAL 417 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 80/164 (48%), Gaps = 11/164 (6%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP 264 R ++G PNVGKS+L NRL+G + LT Q G+TRD +S W+ E+ DT G+ + Sbjct: 3 RFVIIGAPNVGKSSLFNRLVGGRKALTYDQPGVTRDYLSHICEWRGRYFELVDTGGLYRG 62 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 + ES K+S++ + + + ++DA+ + I + G V++ NK Sbjct: 63 EQDLESF----WKRSLEIAQDADVVLFVVDASEHLSSVEYDIAQDLRKMGKEVIVVGNKM 118 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLM 368 D++ + N DL + +++ +GR L DLM Sbjct: 119 DLLPEGFN--PDLYNLGFDKVQ-----FVSATTGRNSGDLLDLM 155 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 45/170 (26%), Positives = 82/170 (48%), Gaps = 16/170 (9%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + ++++G N GKSTL NRL+ K+ +V PG T D + + ++ + DT G+ Sbjct: 173 FRVSVIGRTNAGKSTLMNRLLGKERVLVSEMPGTTLDFITETINVKDMVVEVTDTPGLRK 232 Query: 63 G--KNCSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 G + S+ + + + E + + +++ +ID+ G+T D ++ ++ I I V N Sbjct: 233 GDLRRLSVPEMLAVKRLENRLRKQQVLIHVIDASVGLTSLDESVIRIAEEEGIGYIAVLN 292 Query: 120 KMDT----RIAQRNFYEIYS-----LDFKEIVEISAEH----DLGTSELH 156 K+D R A+ E + +D K ++ SAE D T LH Sbjct: 293 KIDLAEDPRKAESILTEAFLDKFPWVDRKAVIAASAEENYNVDKVTDALH 342 >gi|169827483|ref|YP_001697641.1| GTP-binding protein [Lysinibacillus sphaericus C3-41] gi|168991971|gb|ACA39511.1| GTP-binding protein [Lysinibacillus sphaericus C3-41] Length = 211 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 82/233 (35%), Positives = 124/233 (53%), Gaps = 29/233 (12%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 +AIVG PNVGKST+FNR+V +++++V + PG+TRDR+Y A FNI+DT GI G Sbjct: 5 VVAIVGRPNVGKSTIFNRIVGERVSIVEDIPGVTRDRIYSSAEWLTHDFNIIDTGGIEIG 64 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 +Q+ Q E+AI EA +I+F+ + + G+T D + L K P+++ NK+D Sbjct: 65 DE-PFLEQIRQQAEIAIEEADVIIFMTNGREGVTAADEQVAKILYKTKKPVVLAVNKIDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + Y+ Y+L F E IS H LG +L K F Sbjct: 124 PDMREMIYDFYALGFGEPWPISGSHGLGLGDLLDECAKHF-------------------- 163 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSG 236 PKE+ G +K +++GRPNVGKS+L+N LG +R++ + +G Sbjct: 164 -PKEDEEQYGDDVIK-------FSLIGRPNVGKSSLVNAFLGQDRVIVSNIAG 208 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 50/169 (29%), Positives = 82/169 (48%), Gaps = 13/169 (7%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 ++KP+ +A+VGRPNVGKST+ NR++G + G+TRD + S W H I DT Sbjct: 1 MTKPV-VAIVGRPNVGKSTIFNRIVGERVSIVEDIPGVTRDRIYSSAEWLTHDFNIIDTG 59 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+ E ++ +++ ++ + I + + D ++ ++ T VVL Sbjct: 60 GIEIGD---EPFLEQIRQQAEIAIEEADVIIFMTNGREGVTAADEQVAKILYKTKKPVVL 116 Query: 320 ALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLM 368 A+NK D D+R + I + +G ISG G GL DL+ Sbjct: 117 AVNKIDN--------PDMR-EMIYDFYALGFGEPWPISGSHGLGLGDLL 156 >gi|322380446|ref|ZP_08054647.1| GTP-binding protein EngA [Helicobacter suis HS5] gi|321147128|gb|EFX41827.1| GTP-binding protein EngA [Helicobacter suis HS5] Length = 348 Score = 140 bits (354), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 100/353 (28%), Positives = 164/353 (46%), Gaps = 30/353 (8%) Query: 107 LRKKNIPIIIVSNKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQK 166 ++K+ ++ NK+D ++ + YE SL KE+ IS H+ G + L + I K F K Sbjct: 14 IQKQKRACFLLVNKLDNQVEELAGYEFASLGIKEMFFISVSHNKGLNTLTNAILKYFHLK 73 Query: 167 YPNHPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGY 226 P+ + N +++ ++GR NVGKS+L+N L+ Sbjct: 74 PLESPIHLSTN------------------------PAIQVGIIGRVNVGKSSLLNALIEQ 109 Query: 227 NRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTC 286 R L G T D V S + N I DTAG+R+ S++ E LE+ + ++ + + Sbjct: 110 ERALVSEIPGTTIDPVDQSISHHNQEICFVDTAGLRQRSKV-EGLEKFALDRTRKVLEKS 168 Query: 287 ETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLN-LLQDLRTKAIKNL 345 +++LDA+ PF + D +I V++ NKWD+ +++D + K K L Sbjct: 169 HIALLVLDASTPFVELDEKIASLAGEYNLGVIVVFNKWDIKHAGFETIIEDFKHK-FKFL 227 Query: 346 PQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFN 405 + + IS R + D +LE+ + RI+TS LN + + ++P P+ Sbjct: 228 QYAPLLTTSAISKRHILQIKD---KILEVYAYFSMRISTSTLNQTIIEATEKHPLPSDHG 284 Query: 406 RYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 + R+ Y TQ S PP + P + SYKRYL N LR F G PI + Sbjct: 285 KIVRIYYSTQFASCPPQIALVMNRPKALHFSYKRYLTNTLRAKFGFLGTPILL 337 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 42/137 (30%), Positives = 68/137 (49%), Gaps = 4/137 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD-G 63 + I+G NVGKS+L N L++++ A+V PG T D + + VDTAG+ Sbjct: 89 VGIIGRVNVGKSSLLNALIEQERALVSEIPGTTIDPVDQSISHHNQEICFVDTAGLRQRS 148 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 K + K D+T + ++H+ L ++D+ D I S + N+ +I+V NK D Sbjct: 149 KVEGLEKFALDRTRKVLEKSHIALLVLDASTPFVELDEKIASLAGEYNLGVIVVFNKWDI 208 Query: 124 RIAQRNFYEIYSLDFKE 140 + A +E DFK Sbjct: 209 KHAG---FETIIEDFKH 222 >gi|222616294|gb|EEE52426.1| hypothetical protein OsJ_34551 [Oryza sativa Japonica Group] Length = 563 Score = 140 bits (352), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 107/385 (27%), Positives = 188/385 (48%), Gaps = 42/385 (10%) Query: 95 GITPYDHAITSFLRK--KNIPIIIVSNKMDT-RIAQRNFYEIYSLDFKEIVEISAEHDLG 151 G+ D I +LR+ + II+ NK ++ R Q + +SL F + ISA G Sbjct: 184 GLVAADIEIADWLRRNYSDKHIILAVNKCESPRKGQMQALDFWSLGFSPL-PISAITGTG 242 Query: 152 TSELHSVIFKIFKQKYPNHPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGR 211 T EL L+M+ + N E + + +G IA+VGR Sbjct: 243 TGEL----------------LDMVCSELSNFEE-LDGVEEDGNYIPA-------IAIVGR 278 Query: 212 PNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKN-HPIEIFDTAGMRKPSRITES 270 PNVGKS+++N L+G +R + SG TRD++ + ++ ++ DTAG+R+ + + + Sbjct: 279 PNVGKSSILNALVGEDRTIVSPVSGTTRDAIDTEFTTEDGQKYKLIDTAGIRRRAAVASA 338 Query: 271 ---LEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMV 327 E +VK++ +++R + ++++A +QD +I + + G A V+ +NKWD + Sbjct: 339 GSTTETLSVKRAFRAIRRSDVVALVVEAMACITEQDYKIAERIEKEGKACVIVVNKWDTI 398 Query: 328 SDKLN-----LLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRI 382 +K + QD+R K ++ L +Y S G +D ++ + + K R+ Sbjct: 399 PNKNHQSTTYYEQDVREK-LRILDWAPIVYC---SATHGSSVDKIISAAALVEKERSRRL 454 Query: 383 TTSYLNSWLQKTQLQNPPP-TIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYL 441 TS LN +++ PPP T + R+ Y TQ PP+F+ F PE+++RY+ Sbjct: 455 GTSILNQVVREAIAFKPPPRTRGGKRGRVYYTTQAAIRPPTFVFFVNDAKLFPETFRRYM 514 Query: 442 INRLRINFSLSGIPIRMCFQSSKNP 466 +LR + G PIR+ ++S K P Sbjct: 515 EKKLRSDAGFPGTPIRLLWRSRKRP 539 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 54/182 (29%), Positives = 87/182 (47%), Gaps = 18/182 (9%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAII-NGVIFNIVDTAGI 60 I IAIVG PNVGKS++ N LV + +V G TRD + + +G + ++DTAGI Sbjct: 270 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPVSGTTRDAIDTEFTTEDGQKYKLIDTAGI 329 Query: 61 ADGKNCSIAKQMNDQTEL-----AINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPII 115 + A + + AI + ++ ++++ A IT D+ I + K+ + Sbjct: 330 RRRAAVASAGSTTETLSVKRAFRAIRRSDVVALVVEAMACITEQDYKIAERIEKEGKACV 389 Query: 116 IVSNKMDTRIAQRN-----FYE------IYSLDFKEIVEISAEHDLGTSELHSVIFKIFK 164 IV NK DT I +N +YE + LD+ IV SA H ++ S + K Sbjct: 390 IVVNKWDT-IPNKNHQSTTYYEQDVREKLRILDWAPIVYCSATHGSSVDKIISAAALVEK 448 Query: 165 QK 166 ++ Sbjct: 449 ER 450 Score = 40.4 bits (93), Expect = 0.67, Method: Compositional matrix adjust. Identities = 21/42 (50%), Positives = 28/42 (66%), Gaps = 2/42 (4%) Query: 186 KENITSEGKSSVKNISKPL--RIAVVGRPNVGKSTLINRLLG 225 K I + S+ K+I L R+A++GRPNVGKS L NRL+G Sbjct: 141 KRRIIRDKTSASKHIPDNLLPRVAIIGRPNVGKSALFNRLVG 182 >gi|147785731|emb|CAN73088.1| hypothetical protein VITISV_030762 [Vitis vinifera] Length = 344 Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 98/343 (28%), Positives = 172/343 (50%), Gaps = 39/343 (11%) Query: 132 EIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEESPKENITS 191 E +SL F + ISA GT EL L+++ + + E P EN+ Sbjct: 5 EFWSLGFTPL-PISAVSGTGTGEL----------------LDLVCSGLKKIEDP-ENLDG 46 Query: 192 EGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKN- 250 E +N IA+VGRPNVGKS+++N L+G +R + SG TRD++ + + Sbjct: 47 E-----ENYVPA--IAIVGRPNVGKSSILNALVGEDRTIVSPVSGTTRDAIDTEFTGPDG 99 Query: 251 HPIEIFDTAGMRKPSRITES---LEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIV 307 + DTAG+R+ + + S E +V ++ +++R + ++++A +QD RI Sbjct: 100 QKYRLIDTAGIRRRAAVASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDYRIA 159 Query: 308 DSVFNTGHAVVLALNKWDMVSDK-----LNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 + + G ++ +NKWD + +K QD+R K ++ L +Y I+G + Sbjct: 160 ERIEREGKGCLIVVNKWDTIPNKNQQTATYYEQDVREK-LRVLGWAPIVYSTAIAGHS-- 216 Query: 363 GLDDLMVSVLEINKLWKTRITTSYLNSWLQKT-QLQNPPPTIFNRYNRLKYITQIQSSPP 421 +D ++V+ + K R++TS LN +Q+ ++PP + R+ Y TQ PP Sbjct: 217 -VDKIIVAASTVEKERSRRLSTSILNQVVQEALAFKSPPRNRGGKRGRVYYCTQAAIRPP 275 Query: 422 SFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 +F+ F PE+Y+RY+ +LR + SG PIR+ ++S + Sbjct: 276 TFVFFVNDAKLFPETYRRYMEKQLRSDAGFSGTPIRLLWRSRR 318 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 41/128 (32%), Positives = 67/128 (52%), Gaps = 10/128 (7%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAI-INGVIFNIVDTAGIAD 62 IAIVG PNVGKS++ N LV + +V G TRD + + +G + ++DTAGI Sbjct: 53 AIAIVGRPNVGKSSILNALVGEDRTIVSPVSGTTRDAIDTEFTGPDGQKYRLIDTAGIR- 111 Query: 63 GKNCSIAKQMNDQTELAINEA-------HLILFLIDSKAGITPYDHAITSFLRKKNIPII 115 + ++A + L++N A ++ +I++ A IT D+ I + ++ + Sbjct: 112 -RRAAVASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDYRIAERIEREGKGCL 170 Query: 116 IVSNKMDT 123 IV NK DT Sbjct: 171 IVVNKWDT 178 >gi|217074544|gb|ACJ85632.1| unknown [Medicago truncatula] Length = 319 Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 80/269 (29%), Positives = 146/269 (54%), Gaps = 14/269 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKN-HPIEIFDTAGMRKP 264 I++VGRPNVGKS+++N L+G +R + SG TRD++ + + + DTAG+RK Sbjct: 54 ISIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPDGQKFHLIDTAGIRKR 113 Query: 265 SRITES---LEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLAL 321 + + + E +V ++ +++R + ++++A +QD +I + + G V+ + Sbjct: 114 TTVASAGSTTEALSVNRAFRAIRRSDVGALVIEAMACITEQDYKIAERIEKEGKGCVIVV 173 Query: 322 NKWDMVSDK-----LNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 NKWD + +K L QD+R K ++ L +Y ++G + +D ++V+ +E+ K Sbjct: 174 NKWDTIPNKNQQAALYYEQDVREK-LRLLDWAPVVYSTALAG---QNVDKIIVAAIEVEK 229 Query: 377 LWKTRITTSYLNSWLQKTQLQNPPP-TIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPE 435 R+ TS LN +++ PPP T + R+ Y TQ PP+F+ F PE Sbjct: 230 ERSRRLGTSILNQVVREAVTFKPPPRTRGGKRGRVYYCTQAAIRPPTFVFFVNDAKLFPE 289 Query: 436 SYKRYLINRLRINFSLSGIPIRMCFQSSK 464 +Y+R++ +LR N G PIR+ ++S + Sbjct: 290 TYRRFMEKQLRSNAGFPGTPIRLLWRSRR 318 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/130 (33%), Positives = 68/130 (52%), Gaps = 10/130 (7%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAI-INGVIFNIVDTAGI 60 + I+IVG PNVGKS++ N LV + +V G TRD + + +G F+++DTAGI Sbjct: 51 VPAISIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPDGQKFHLIDTAGI 110 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLIL-------FLIDSKAGITPYDHAITSFLRKKNIP 113 K ++A + L++N A + +I++ A IT D+ I + K+ Sbjct: 111 R--KRTTVASAGSTTEALSVNRAFRAIRRSDVGALVIEAMACITEQDYKIAERIEKEGKG 168 Query: 114 IIIVSNKMDT 123 +IV NK DT Sbjct: 169 CVIVVNKWDT 178 >gi|237756936|ref|ZP_04585406.1| GTP-binding protein EngA [Sulfurihydrogenibium yellowstonense SS-5] gi|237690908|gb|EEP60046.1| GTP-binding protein EngA [Sulfurihydrogenibium yellowstonense SS-5] Length = 209 Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 79/230 (34%), Positives = 121/230 (52%), Gaps = 21/230 (9%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 ++ +AIVG PNVGKS+LFNR++ ++ A+V + PG+TRDR+ A GV F +VDT G Sbjct: 1 MFRVAIVGRPNVGKSSLFNRIIGQRKAIVEDVPGVTRDRIVSTAEWRGVKFEVVDTGGYI 60 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 G A + Q E + + L +F++D K G+TP D I + L + P+I+ NK+ Sbjct: 61 TGDEDKFAPYIRKQVEKELELSDLFIFVVDGKQGLTPLDKEIANILHRTEKPVIVAVNKI 120 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 D ++ YE Y L F+ I+ IS LG +EL +K Sbjct: 121 DDTEKEKLAYEFYELGFENIISISTIQKLGLAELL---------------------DKVV 159 Query: 182 EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLT 231 E P+ + + + +++A+VG+PN GKS+LIN LL R+L Sbjct: 160 EYIPEYEKEIQEEEEKEEKRDYIKVAIVGKPNAGKSSLINALLNEERVLV 209 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 59/122 (48%), Gaps = 2/122 (1%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 R+A+VGRPNVGKS+L NR++G + + G+TRD + + W+ E+ DT G Sbjct: 2 FRVAIVGRPNVGKSSLFNRIIGQRKAIVEDVPGVTRDRIVSTAEWRGVKFEVVDTGGYIT 61 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 + K+ + + + I ++D D I + + T V++A+NK Sbjct: 62 GDE--DKFAPYIRKQVEKELELSDLFIFVVDGKQGLTPLDKEIANILHRTEKPVIVAVNK 119 Query: 324 WD 325 D Sbjct: 120 ID 121 >gi|78776593|ref|YP_392908.1| GTP-binding protein EngA [Sulfurimonas denitrificans DSM 1251] gi|123550784|sp|Q30TK8|DER_SULDN RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gi|78497133|gb|ABB43673.1| GTPase family protein [Sulfurimonas denitrificans DSM 1251] Length = 494 Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 86/265 (32%), Positives = 148/265 (55%), Gaps = 13/265 (4%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 ++I+++GR NVGKS+L+N LLG R + S +G T D + S +K+ + DTAG+R+ Sbjct: 235 IKISIIGRTNVGKSSLLNALLGEERSVVSSVAGTTIDPIDESMEYKDKQLTFVDTAGLRR 294 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 +I +E+ + ++ + + +V+LDA+ PF D +I V + A ++ LNK Sbjct: 295 RGKIV-GIEKFALMRTKEMLENSNMALVVLDASEPFLDLDEKIAGLVDSNRLACIIVLNK 353 Query: 324 WDMVS-DKLN-LLQDLRT--KAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWK 379 WD+ + D+ + ++Q++R K + P I T+S ++ +D L +LEI+K + Sbjct: 354 WDIANRDEYDKIIQEVRDRFKFLAYAP------IVTLSAKSHRRVDKLFDMILEIDKNYS 407 Query: 380 TRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKR 439 I TS LN L+K ++ P++ + R+ Y TQ ++ PP I P + +Y+R Sbjct: 408 QHIKTSELNVVLEKALRRHQLPSMRGQIIRIYYATQYETRPPKIAIVMNKPRGLHFTYRR 467 Query: 440 YLINRLRINFSLSGIPIRMCFQSSK 464 YL N+LR FS SG P+ F++ K Sbjct: 468 YLTNKLREAFSFSGTPV--LFKAKK 490 Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 81/156 (51%), Gaps = 2/156 (1%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAI+G PNVGKS+LFNRL+KK+ A+ + G TRD +I ++DT G+ G Sbjct: 4 IAIIGRPNVGKSSLFNRLMKKRDAITSDVAGTTRDVKRRHVVIINKEALLLDTGGLDQG- 62 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 C + ++ +++ A +A +IL+++D K+ D + L+ + +V NK+D Sbjct: 63 -CELFDKIKEKSLEAAKKADIILYMVDGKSIPEDADKKLFYELQTLGKEVALVVNKIDND 121 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 + N ++ Y I IS H+ + L I+ Sbjct: 122 KLKDNLWDFYEFGTDAIFGISVSHNRSVNALLEWIY 157 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/128 (30%), Positives = 68/128 (53%), Gaps = 8/128 (6%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP 264 +IA++GRPNVGKS+L NRL+ +T +G TRD N + DT G+ + Sbjct: 3 KIAIIGRPNVGKSSLFNRLMKKRDAITSDVAGTTRDVKRRHVVIINKEALLLDTGGLDQG 62 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNK 323 + + +++ KS+++ + + + ++D +IP E D ++ + G V L +NK Sbjct: 63 CELFDKIKE----KSLEAAKKADIILYMVDGKSIP-EDADKKLFYELQTLGKEVALVVNK 117 Query: 324 WDMVSDKL 331 D +DKL Sbjct: 118 ID--NDKL 123 Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 51/176 (28%), Positives = 80/176 (45%), Gaps = 13/176 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI-ADG 63 I+I+G NVGKS+L N L+ ++ +VV + G T D + VDTAG+ G Sbjct: 237 ISIIGRTNVGKSSLLNALLGEERSVVSSVAGTTIDPIDESMEYKDKQLTFVDTAGLRRRG 296 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 K I K +T+ + +++ L ++D+ D I + + IIV NK D Sbjct: 297 KIVGIEKFALMRTKEMLENSNMALVVLDASEPFLDLDEKIAGLVDSNRLACIIVLNKWD- 355 Query: 124 RIAQRNFYE---------IYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNH 170 IA R+ Y+ L + IV +SA+ +L +I +I K Y H Sbjct: 356 -IANRDEYDKIIQEVRDRFKFLAYAPIVTLSAKSHRRVDKLFDMILEIDKN-YSQH 409 >gi|115486387|ref|NP_001068337.1| Os11g0638000 [Oryza sativa Japonica Group] gi|113645559|dbj|BAF28700.1| Os11g0638000 [Oryza sativa Japonica Group] Length = 315 Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 81/271 (29%), Positives = 146/271 (53%), Gaps = 14/271 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKN-HPIEIFDTAGMRKP 264 IA+VGRPNVGKS+++N L+G +R + SG TRD++ + ++ ++ DTAG+R+ Sbjct: 25 IAIVGRPNVGKSSILNALVGEDRTIVSPVSGTTRDAIDTEFTTEDGQKYKLIDTAGIRRR 84 Query: 265 SRITES---LEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLAL 321 + + + E +VK++ +++R + ++++A +QD +I + + G A V+ + Sbjct: 85 AAVASAGSTTETLSVKRAFRAIRRSDVVALVVEAMACITEQDYKIAERIEKEGKACVIVV 144 Query: 322 NKWDMVSDKLN-----LLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 NKWD + +K + QD+R K ++ L +Y S G +D ++ + + K Sbjct: 145 NKWDTIPNKNHQSTTYYEQDVREK-LRILDWAPIVYC---SATHGSSVDKIISAAALVEK 200 Query: 377 LWKTRITTSYLNSWLQKTQLQNPPP-TIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPE 435 R+ TS LN +++ PPP T + R+ Y TQ PP+F+ F PE Sbjct: 201 ERSRRLGTSILNQVVREAIAFKPPPRTRGGKRGRVYYTTQAAIRPPTFVFFVNDAKLFPE 260 Query: 436 SYKRYLINRLRINFSLSGIPIRMCFQSSKNP 466 +++RY+ +LR + G PIR+ ++S K P Sbjct: 261 TFRRYMEKKLRSDAGFPGTPIRLLWRSRKRP 291 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 54/182 (29%), Positives = 87/182 (47%), Gaps = 18/182 (9%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAII-NGVIFNIVDTAGI 60 I IAIVG PNVGKS++ N LV + +V G TRD + + +G + ++DTAGI Sbjct: 22 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPVSGTTRDAIDTEFTTEDGQKYKLIDTAGI 81 Query: 61 ADGKNCSIAKQMNDQTEL-----AINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPII 115 + A + + AI + ++ ++++ A IT D+ I + K+ + Sbjct: 82 RRRAAVASAGSTTETLSVKRAFRAIRRSDVVALVVEAMACITEQDYKIAERIEKEGKACV 141 Query: 116 IVSNKMDTRIAQRN-----FYE------IYSLDFKEIVEISAEHDLGTSELHSVIFKIFK 164 IV NK DT I +N +YE + LD+ IV SA H ++ S + K Sbjct: 142 IVVNKWDT-IPNKNHQSTTYYEQDVREKLRILDWAPIVYCSATHGSSVDKIISAAALVEK 200 Query: 165 QK 166 ++ Sbjct: 201 ER 202 >gi|308375657|ref|ZP_07668083.1| putative ribosome-associated GTPase EngA [Mycobacterium tuberculosis SUMu007] gi|308380153|ref|ZP_07669129.1| putative ribosome-associated GTPase EngA [Mycobacterium tuberculosis SUMu011] gi|308345615|gb|EFP34466.1| putative ribosome-associated GTPase EngA [Mycobacterium tuberculosis SUMu007] gi|308362468|gb|EFP51319.1| putative ribosome-associated GTPase EngA [Mycobacterium tuberculosis SUMu011] Length = 262 Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 88/254 (34%), Positives = 133/254 (52%), Gaps = 6/254 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VG+PNVGKS+L+N+L G R + +G T D V DTAG+R+ Sbjct: 1 MALVGKPNVGKSSLLNKLAGDQRSVVHEAAGTTVDPVDSLIELGGDVWRFVDTAGLRRKV 60 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 E ++ ++ + E IVL+DA+ P +QDLR++ V G A+VLA NKWD Sbjct: 61 GQASGHEFYASVRTHAAIDSAEVAIVLIDASQPLTEQDLRVISMVIEAGRALVLAYNKWD 120 Query: 326 MV-SDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITT 384 +V D+ LLQ + + L Q+ IS +TG + L+ ++ + W TRI T Sbjct: 121 LVDEDRRELLQ---REIDRELVQVRWAQRVNISAKTGRAVHKLVPAMEDALASWDTRIAT 177 Query: 385 SYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINR 444 LN+WL + PPP + R+ + TQ + PP+F++F T + Y+R+L R Sbjct: 178 GPLNTWLTEVTAATPPPVRGGKQPRILFATQATARPPTFVLFTT--GFLEAGYRRFLERR 235 Query: 445 LRINFSLSGIPIRM 458 LR F G PIR+ Sbjct: 236 LRETFGFDGSPIRV 249 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 62/120 (51%), Gaps = 2/120 (1%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD-- 62 +A+VG PNVGKS+L N+L + +VV G T D + + G ++ VDTAG+ Sbjct: 1 MALVGKPNVGKSSLLNKLAGDQRSVVHEAAGTTVDPVDSLIELGGDVWRFVDTAGLRRKV 60 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 G+ + +T AI+ A + + LID+ +T D + S + + +++ NK D Sbjct: 61 GQASGHEFYASVRTHAAIDSAEVAIVLIDASQPLTEQDLRVISMVIEAGRALVLAYNKWD 120 >gi|237751648|ref|ZP_04582128.1| GTP-binding protein [Helicobacter bilis ATCC 43879] gi|229373014|gb|EEO23405.1| GTP-binding protein [Helicobacter bilis ATCC 43879] Length = 489 Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 82/269 (30%), Positives = 142/269 (52%), Gaps = 4/269 (1%) Query: 196 SVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEI 255 + +N + I ++GRPNVGKS+L+N L NR L + +G T D V + + + Sbjct: 203 TTQNTDNTISIGIIGRPNVGKSSLLNALTNTNRSLVSNIAGTTIDPVDEHIMYNGYNLTF 262 Query: 256 FDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGH 315 DTAG+R+ S+I E +E+ + ++ + ++ C+ +++LD + F + D +I + G Sbjct: 263 VDTAGIRRRSKI-EGIEKYALDRTQKMLQECDIALLVLDCSTEFVELDEKISSIASSNGL 321 Query: 316 AVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEIN 375 V++ +KWD+ S + + ++ + K L I T S T + +L ++E+ Sbjct: 322 GVIVVFHKWDIRSKEFDSRLEVYKRKFKFLEYAP---IITASSTTHRHIKELKQKIIEVY 378 Query: 376 KLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPE 435 + + RI T+ LN+ +Q ++P P+ + R+ Y TQ S PP + PN + Sbjct: 379 QHFSLRIPTAKLNTCIQNALKKHPIPSDHGKIVRIYYATQFDSKPPKIALIMNRPNALHF 438 Query: 436 SYKRYLINRLRINFSLSGIPIRMCFQSSK 464 SYKRYLIN LR +F G PI + +S K Sbjct: 439 SYKRYLINTLRQHFGFLGTPIMIEARSKK 467 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 69/241 (28%), Positives = 108/241 (44%), Gaps = 25/241 (10%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI-AD 62 +I I+G PNVGKS+L N L ++V N G T D + + NG VDTAGI Sbjct: 212 SIGIIGRPNVGKSSLLNALTNTNRSLVSNIAGTTIDPVDEHIMYNGYNLTFVDTAGIRRR 271 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 K I K D+T+ + E + L ++D D I+S + +I+V +K D Sbjct: 272 SKIEGIEKYALDRTQKMLQECDIALLVLDCSTEFVELDEKISSIASSNGLGVIVVFHKWD 331 Query: 123 TRIAQRNF-YEIYS-----LDFKEIVEISAEHDLGTSELHSVIFKIFKQ---KYPNHPLE 173 R + + E+Y L++ I+ S+ EL I ++++ + P L Sbjct: 332 IRSKEFDSRLEVYKRKFKFLEYAPIITASSTTHRHIKELKQKIIEVYQHFSLRIPTAKLN 391 Query: 174 -MIENNKRNEESPKENITSEGK-----SSVKNISKPLRIAVV-GRPNV----GKSTLINR 222 I+N + P ++ GK + + SKP +IA++ RPN K LIN Sbjct: 392 TCIQNALKKHPIPSDH----GKIVRIYYATQFDSKPPKIALIMNRPNALHFSYKRYLINT 447 Query: 223 L 223 L Sbjct: 448 L 448 >gi|297517161|ref|ZP_06935547.1| GTP-binding protein EngA [Escherichia coli OP50] Length = 202 Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 72/174 (41%), Positives = 103/174 (59%), Gaps = 2/174 (1%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A I G F +DT GI Sbjct: 10 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGI 69 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ LAI EA ++LF++D++AG+ P D AI LR + P +V+NK Sbjct: 70 -DGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANK 128 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGT-SELHSVIFKIFKQKYPNHPLE 173 D + + YSL EI I+A H G S L V+ + P ++ Sbjct: 129 TDGLDPDQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHVLLPWMEDLAPQEEVD 182 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 42/167 (25%), Positives = 69/167 (41%), Gaps = 12/167 (7%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VGRPNVGKSTL NRL L G+TRD + DT G+ Sbjct: 14 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGI---D 70 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + +E + ++S+ ++ + + ++DA D I + + L NK D Sbjct: 71 GTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANKTD 130 Query: 326 MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVL 372 + +A+ + +G I I+ G G+ L+ VL Sbjct: 131 GLDPD---------QAVVDFYSLGLGEIYPIAASHGRGVLSLLEHVL 168 >gi|108864612|gb|ABA94923.2| small GTP-binding protein domain containing protein, expressed [Oryza sativa Japonica Group] Length = 344 Score = 137 bits (344), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 81/271 (29%), Positives = 146/271 (53%), Gaps = 14/271 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKN-HPIEIFDTAGMRKP 264 IA+VGRPNVGKS+++N L+G +R + SG TRD++ + ++ ++ DTAG+R+ Sbjct: 54 IAIVGRPNVGKSSILNALVGEDRTIVSPVSGTTRDAIDTEFTTEDGQKYKLIDTAGIRRR 113 Query: 265 SRITES---LEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLAL 321 + + + E +VK++ +++R + ++++A +QD +I + + G A V+ + Sbjct: 114 AAVASAGSTTETLSVKRAFRAIRRSDVVALVVEAMACITEQDYKIAERIEKEGKACVIVV 173 Query: 322 NKWDMVSDKLN-----LLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 NKWD + +K + QD+R K ++ L +Y S G +D ++ + + K Sbjct: 174 NKWDTIPNKNHQSTTYYEQDVREK-LRILDWAPIVYC---SATHGSSVDKIISAAALVEK 229 Query: 377 LWKTRITTSYLNSWLQKTQLQNPPP-TIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPE 435 R+ TS LN +++ PPP T + R+ Y TQ PP+F+ F PE Sbjct: 230 ERSRRLGTSILNQVVREAIAFKPPPRTRGGKRGRVYYTTQAAIRPPTFVFFVNDAKLFPE 289 Query: 436 SYKRYLINRLRINFSLSGIPIRMCFQSSKNP 466 +++RY+ +LR + G PIR+ ++S K P Sbjct: 290 TFRRYMEKKLRSDAGFPGTPIRLLWRSRKRP 320 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 54/182 (29%), Positives = 87/182 (47%), Gaps = 18/182 (9%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAII-NGVIFNIVDTAGI 60 I IAIVG PNVGKS++ N LV + +V G TRD + + +G + ++DTAGI Sbjct: 51 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPVSGTTRDAIDTEFTTEDGQKYKLIDTAGI 110 Query: 61 ADGKNCSIAKQMNDQTEL-----AINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPII 115 + A + + AI + ++ ++++ A IT D+ I + K+ + Sbjct: 111 RRRAAVASAGSTTETLSVKRAFRAIRRSDVVALVVEAMACITEQDYKIAERIEKEGKACV 170 Query: 116 IVSNKMDTRIAQRN-----FYE------IYSLDFKEIVEISAEHDLGTSELHSVIFKIFK 164 IV NK DT I +N +YE + LD+ IV SA H ++ S + K Sbjct: 171 IVVNKWDT-IPNKNHQSTTYYEQDVREKLRILDWAPIVYCSATHGSSVDKIISAAALVEK 229 Query: 165 QK 166 ++ Sbjct: 230 ER 231 >gi|213581531|ref|ZP_03363357.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 162 Score = 136 bits (343), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 68/155 (43%), Positives = 96/155 (61%), Gaps = 1/155 (0%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A + G F +DT GI Sbjct: 1 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ LAI EA ++LF++D++AG+ P D AI LR + P +V+NK Sbjct: 61 -DGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 D + + YSL EI I+A H G L Sbjct: 120 TDGLDPDQAVVDFYSLGLGEIYPIAASHGRGVLSL 154 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 42/167 (25%), Positives = 69/167 (41%), Gaps = 12/167 (7%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VGRPNVGKSTL NRL L G+TRD + DT G+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGI---D 61 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + +E + ++S+ ++ + + ++DA D I + + L NK D Sbjct: 62 GTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANKTD 121 Query: 326 MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVL 372 + +A+ + +G I I+ G G+ L+ VL Sbjct: 122 GLDPD---------QAVVDFYSLGLGEIYPIAASHGRGVLSLLEHVL 159 >gi|18075778|emb|CAD11317.1| GTP-binding protein homologue [Helicobacter pylori] Length = 347 Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 100/332 (30%), Positives = 165/332 (49%), Gaps = 28/332 (8%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 10 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA-- 67 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSNKM 121 K+ ++K++ A + LIL+++D K+ P D I F + K N +V NK+ Sbjct: 68 KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVINKI 125 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF------KIFKQKYPNHPLEMI 175 D + Y S + IS H+ G S L I +I +Q LE + Sbjct: 126 DNDKEKERAYAFSSFGIPKSFNISVSHNRGISALIDAILNTLNLNQIIEQDLDADILESL 185 Query: 176 EN-NKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQ 234 E N EE+ +E I +++ ++GR NVGKS+L+N L R L S Sbjct: 186 ETPNNALEETKEEEI--------------IQVGIIGRVNVGKSSLLNALTKKERSLVSSV 231 Query: 235 SGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLD 294 +G T D + + + I DTAG+R +I +E+ ++++ +++ +++LD Sbjct: 232 AGTTIDPIDETILIGDQKICFVDTAGIRHRGKIL-GIEKYALERTQKALEKSHIALLVLD 290 Query: 295 ATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 + PF + D +I ++L LNKWD+ Sbjct: 291 VSAPFVELDEKISSLADKHSLGIILILNKWDI 322 Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 45/126 (35%), Positives = 68/126 (53%), Gaps = 1/126 (0%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 I + I+G NVGKS+L N L KK+ ++V + G T D + +I VDTAGI Sbjct: 200 IIQVGIIGRVNVGKSSLLNALTKKERSLVSSVAGTTIDPIDETILIGDQKICFVDTAGIR 259 Query: 62 D-GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 GK I K ++T+ A+ ++H+ L ++D A D I+S K ++ II++ NK Sbjct: 260 HRGKILGIEKYALERTQKALEKSHIALLVLDVSAPFVELDEKISSLADKHSLGIILILNK 319 Query: 121 MDTRIA 126 D R A Sbjct: 320 WDIRYA 325 >gi|17932845|emb|CAD11319.1| GTP-binding protein homologue [Helicobacter pylori] Length = 347 Score = 133 bits (335), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 99/332 (29%), Positives = 165/332 (49%), Gaps = 28/332 (8%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 10 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA-- 67 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSNKM 121 K+ ++K++ A + LIL+++D K+ P D I F + K N +V NK+ Sbjct: 68 KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVINKI 125 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF------KIFKQKYPNHPLEMI 175 D + Y S + IS H+ G S L + +I +Q LE + Sbjct: 126 DNDKEKERAYAFSSFGIPKSFNISVSHNRGISALIDAVLNALNLNQIIEQDLDADILESL 185 Query: 176 EN-NKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQ 234 E N EE+ +E I +++ ++GR NVGKS+L+N L R L S Sbjct: 186 ETPNNALEETKEEEI--------------IQVGIIGRVNVGKSSLLNALTKKERSLVSSV 231 Query: 235 SGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLD 294 +G T D + + + I DTAG+R +I +E+ ++++ +++ +++LD Sbjct: 232 AGTTIDPIDETILIGDQKICFVDTAGIRHRGKIL-GIEKYALERTQKALEKSHIALLVLD 290 Query: 295 ATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 + PF + D +I ++L LNKWD+ Sbjct: 291 VSAPFVELDEKISSLADKHSLGIILILNKWDI 322 Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 45/126 (35%), Positives = 68/126 (53%), Gaps = 1/126 (0%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 I + I+G NVGKS+L N L KK+ ++V + G T D + +I VDTAGI Sbjct: 200 IIQVGIIGRVNVGKSSLLNALTKKERSLVSSVAGTTIDPIDETILIGDQKICFVDTAGIR 259 Query: 62 D-GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 GK I K ++T+ A+ ++H+ L ++D A D I+S K ++ II++ NK Sbjct: 260 HRGKILGIEKYALERTQKALEKSHIALLVLDVSAPFVELDEKISSLADKHSLGIILILNK 319 Query: 121 MDTRIA 126 D R A Sbjct: 320 WDIRYA 325 >gi|50313209|gb|AAT74552.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 333 Score = 132 bits (333), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 99/332 (29%), Positives = 165/332 (49%), Gaps = 28/332 (8%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 10 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA-- 67 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSNKM 121 K+ ++K++ A + LIL+++D K+ P D I F + K N +V NK+ Sbjct: 68 KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPNDEDIKLFREVFKINPNCFLVINKI 125 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF------KIFKQKYPNHPLEMI 175 D + Y S + IS H+ G S L + +I +Q LE + Sbjct: 126 DNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLNALNLNQIIEQDLDADILESL 185 Query: 176 EN-NKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQ 234 E N EE+ +E I +++ ++GR NVGKS+L+N L R L S Sbjct: 186 ETPNNALEENKEEEI--------------IQVGIIGRVNVGKSSLLNALTKKERSLVSSV 231 Query: 235 SGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLD 294 +G T D + + + I DTAG+R +I +E+ ++++ +++ +++LD Sbjct: 232 AGTTIDPIDETILIGDQKICFVDTAGIRHRGKIL-GIEKYALERTQKALEKSHIALLVLD 290 Query: 295 ATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 + PF + D +I ++L LNKWD+ Sbjct: 291 VSAPFVELDEKISSLADKHSLGIILILNKWDI 322 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 45/126 (35%), Positives = 68/126 (53%), Gaps = 1/126 (0%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 I + I+G NVGKS+L N L KK+ ++V + G T D + +I VDTAGI Sbjct: 200 IIQVGIIGRVNVGKSSLLNALTKKERSLVSSVAGTTIDPIDETILIGDQKICFVDTAGIR 259 Query: 62 D-GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 GK I K ++T+ A+ ++H+ L ++D A D I+S K ++ II++ NK Sbjct: 260 HRGKILGIEKYALERTQKALEKSHIALLVLDVSAPFVELDEKISSLADKHSLGIILILNK 319 Query: 121 MDTRIA 126 D R A Sbjct: 320 WDIRYA 325 >gi|18075605|emb|CAD11198.1| GTP-binding protein [Helicobacter pylori] Length = 347 Score = 132 bits (333), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 98/332 (29%), Positives = 165/332 (49%), Gaps = 28/332 (8%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 10 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA-- 67 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSNKM 121 K+ ++K++ A + LIL+++D K+ P D + F + K N +V NK+ Sbjct: 68 KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVINKI 125 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF------KIFKQKYPNHPLEMI 175 D + Y S + IS H+ G S L + +I +Q LE + Sbjct: 126 DNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLNALNLNQIIEQDLDADILESL 185 Query: 176 EN-NKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQ 234 E N EE+ +E I +++ ++GR NVGKS+L+N L R L S Sbjct: 186 ETPNNALEETKEEEI--------------IQVGIIGRVNVGKSSLLNALTKKERSLVSSV 231 Query: 235 SGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLD 294 +G T D + + + I DTAG+R +I +E+ ++++ +++ +++LD Sbjct: 232 AGTTIDPIDETILIGDQKICFVDTAGIRHRGKIL-GIEKYALERTQKALEKSHIALLVLD 290 Query: 295 ATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 + PF + D +I ++L LNKWD+ Sbjct: 291 VSAPFVELDEKISSLADKHSLGIILILNKWDI 322 Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 45/126 (35%), Positives = 68/126 (53%), Gaps = 1/126 (0%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 I + I+G NVGKS+L N L KK+ ++V + G T D + +I VDTAGI Sbjct: 200 IIQVGIIGRVNVGKSSLLNALTKKERSLVSSVAGTTIDPIDETILIGDQKICFVDTAGIR 259 Query: 62 D-GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 GK I K ++T+ A+ ++H+ L ++D A D I+S K ++ II++ NK Sbjct: 260 HRGKILGIEKYALERTQKALEKSHIALLVLDVSAPFVELDEKISSLADKHSLGIILILNK 319 Query: 121 MDTRIA 126 D R A Sbjct: 320 WDIRYA 325 >gi|50313211|gb|AAT74553.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 332 Score = 132 bits (333), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 99/332 (29%), Positives = 165/332 (49%), Gaps = 28/332 (8%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 10 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA-- 67 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSNKM 121 K+ ++K++ A + LIL+++D K+ P D I F + K N +V NK+ Sbjct: 68 KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPNDEDIKLFREVFKINPNCFLVINKI 125 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF------KIFKQKYPNHPLEMI 175 D + Y S + IS H+ G S L + +I +Q LE + Sbjct: 126 DNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLNALNLNQIIEQDLDADILESL 185 Query: 176 EN-NKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQ 234 E N EE+ +E I +++ ++GR NVGKS+L+N L R L S Sbjct: 186 ETPNNALEENKEEEI--------------IQVGIIGRVNVGKSSLLNALTKKERSLVSSV 231 Query: 235 SGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLD 294 +G T D + + + I DTAG+R +I +E+ ++++ +++ +++LD Sbjct: 232 AGTTIDPIDETILIGDQKICFVDTAGIRHRGKIL-GIEKYALERTQKALEKSHIALLVLD 290 Query: 295 ATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 + PF + D +I ++L LNKWD+ Sbjct: 291 VSAPFVELDEKISSLADKHSLGIILILNKWDI 322 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 45/126 (35%), Positives = 68/126 (53%), Gaps = 1/126 (0%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 I + I+G NVGKS+L N L KK+ ++V + G T D + +I VDTAGI Sbjct: 200 IIQVGIIGRVNVGKSSLLNALTKKERSLVSSVAGTTIDPIDETILIGDQKICFVDTAGIR 259 Query: 62 D-GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 GK I K ++T+ A+ ++H+ L ++D A D I+S K ++ II++ NK Sbjct: 260 HRGKILGIEKYALERTQKALEKSHIALLVLDVSAPFVELDEKISSLADKHSLGIILILNK 319 Query: 121 MDTRIA 126 D R A Sbjct: 320 WDIRYA 325 >gi|85000959|ref|XP_955198.1| GTP-binding protein [Theileria annulata strain Ankara] gi|65303344|emb|CAI75722.1| GTP-binding protein, putative [Theileria annulata] Length = 496 Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 114/442 (25%), Positives = 199/442 (45%), Gaps = 71/442 (16%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKM----------AVVGNHPGITRDRLYGQAIINGVIFNI 54 ++IVG PNVGKS++FNR+ K + +VV + PG TRDR Y A NG F I Sbjct: 65 VSIVGRPNVGKSSIFNRITKLVIYLNKQKFHYGSVVNDAPGTTRDRQYSIADWNGKYFRI 124 Query: 55 VDTAGIADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFL-----RK 109 +DT G D DQ L + G+T D+ I +L +K Sbjct: 125 IDTGGYDD-----------DQ-------------LYSDEEGLTSMDYEIRDYLFKHNKKK 160 Query: 110 KNIPIIIVSNKMDTR-----IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFK 164 +++ I++ NK ++ +AQ E + L + +SA H G +EL + F Sbjct: 161 RDLEILLCVNKAESYRRGDILAQ----EFWKLGLGQPYPVSALHGTGLAELLDK-YCCFC 215 Query: 165 QKYPNHPLEMIENNKRNEESPKENIT---SEGKSSVKNISKPLRIAVVGRPNVGKSTLIN 221 + L + KR S + SEG + + LR + RPN GKS++IN Sbjct: 216 WNF----LGALRTLKRERSSMTHKLLFPLSEGTNQLN-----LRYYKLCRPNSGKSSMIN 266 Query: 222 RLLGYNRLLTGSQSGITRDSVSISWN------WKNHPIEIFDTAGMRKPSRITES-LEQK 274 +L+G NR + + G T+DS + + DTAGM+ ++ S L QK Sbjct: 267 KLIGENRCIVSPEEGTTQDSTKVFVTHGKLKALGGEKMTFIDTAGMKLLTKDRRSYLSQK 326 Query: 275 TVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLL 334 + S++S+R + I+++D++ K D+R+ + + A ++ NKWD+V + Sbjct: 327 S---SLKSIRASDVCILVIDSSWGISKNDIRMAEEIKEENKAAIIVCNKWDLVDKTPTIF 383 Query: 335 QDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKT 394 ++ + L + + S ++G+ + ++ ++ K + + + T+ +N+ L+ Sbjct: 384 DNVIGYVREKLYWLDYADVLITSAKSGQKVQNIFEAIQRTYKQYCSNLPTNLVNNVLKDA 443 Query: 395 QLQNPPPTIFNRYNRLKYITQI 416 P R + Y TQ+ Sbjct: 444 MFNRKLPVTHGRRLNIYYATQV 465 >gi|330720075|gb|EGG98493.1| GTP-binding protein EngA [gamma proteobacterium IMCC2047] Length = 272 Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 75/247 (30%), Positives = 128/247 (51%), Gaps = 6/247 (2%) Query: 223 LLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQS 282 +LG +R++ Q G TRDSV I + P + DTAG+R+ + E++E+ ++ K++Q+ Sbjct: 1 MLGEDRVVVYDQPGTTRDSVYIPYERHGKPYTLIDTAGVRRRKNVKETVEKFSIIKTLQA 60 Query: 283 VRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMV--SDKLNLLQDLRTK 340 + + + DA QDL ++ + G A+V+A+NKWD + DK + QDL Sbjct: 61 ISDANVVVCVFDAREGVVDQDLHMLGYALDAGRALVIAVNKWDGMDADDKRKVKQDLE-- 118 Query: 341 AIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPP 400 + L +G I+ IS G + DL S+ + TR +T+ L S LQ+ ++ P Sbjct: 119 --RRLDFVGYAKIHFISALHGTAVGDLYGSIDKAFASATTRWSTNKLTSILQQATTEHAP 176 Query: 401 PTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCF 460 P + R +L+ ++PP ++ +P +Y R+L N R + G PI + F Sbjct: 177 PMVRGRRIKLRMAHMGGANPPRIIVHGNQTENVPNNYTRFLENTFRKALKIEGTPIFVEF 236 Query: 461 QSSKNPY 467 +S KNP+ Sbjct: 237 KSGKNPF 243 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 37/151 (24%), Positives = 72/151 (47%), Gaps = 9/151 (5%) Query: 22 LVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC--SIAKQMNDQTELA 79 ++ + VV + PG TRD +Y +G + ++DTAG+ KN ++ K +T A Sbjct: 1 MLGEDRVVVYDQPGTTRDSVYIPYERHGKPYTLIDTAGVRRRKNVKETVEKFSIIKTLQA 60 Query: 80 INEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT-------RIAQRNFYE 132 I++A++++ + D++ G+ D + + ++I NK D ++ Q Sbjct: 61 ISDANVVVCVFDAREGVVDQDLHMLGYALDAGRALVIAVNKWDGMDADDKRKVKQDLERR 120 Query: 133 IYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 + + + +I ISA H +L+ I K F Sbjct: 121 LDFVGYAKIHFISALHGTAVGDLYGSIDKAF 151 >gi|325973342|ref|YP_004250406.1| GTP-binding protein engA [Mycoplasma suis str. Illinois] gi|325989778|ref|YP_004249477.1| GTP-binding protein EngA [Mycoplasma suis KI3806] gi|323574863|emb|CBZ40523.1| GTP-binding protein EngA [Mycoplasma suis] gi|323651944|gb|ADX98026.1| GTP-binding protein engA [Mycoplasma suis str. Illinois] Length = 456 Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 126/474 (26%), Positives = 221/474 (46%), Gaps = 48/474 (10%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAII---NGVIFNIVDTAGIA 61 + IVGA NVGKS LFNRL+ + ++V N ITRD + + + + VI ++D+ G + Sbjct: 12 VLIVGATNVGKSQLFNRLIGDRHSIVLNRKSITRDLVMRKTKLKDQHEVI--LIDSGGYS 69 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFL-RKKNIPIIIVSNK 120 + + + ++N + E+ +ILF+ GI + ++ + R N P+I+ +NK Sbjct: 70 EELSPNFQSEINQLLINQLKESTIILFMFSKVDGIRAVEWKLSKLIHRYANCPVILAANK 129 Query: 121 MDTRIAQRNFYE-IYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNK 179 +D+ + + E SL F + ISAEHD+ EL I E + Sbjct: 130 IDSNKEEGRWKEHANSLGFGSPILISAEHDINIYELIDKICNFILGD---------EKQQ 180 Query: 180 RNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITR 239 R E +E +++ +VG+ NVGKS+L N LL N ++ G T Sbjct: 181 RELEEELIEEDTE-----------VKLGIVGKVNVGKSSLANALLSSNAIIVSPIEGTTV 229 Query: 240 DSV--SISWNWKNHPIEIFDTAG---MRKPSRITESLEQKTVKKSMQSVRTCETTIVLLD 294 D V SIS N K + + D+ G M+K E L+ +S ++++ + ++D Sbjct: 230 DLVEYSISHNGKTYL--LIDSPGWKKMKKEGLRNEELDHLCWVRSKKAIKAANILLFVID 287 Query: 295 ATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRT------KAIKNLPQI 348 + P D ++ +F + VV+ NKWD++S + Q + K LP Sbjct: 288 PSQPINHLDEKVAKEIFESNLPVVIVANKWDLMSYHPDCQQKQKEFEAQVRKKFYFLPWA 347 Query: 349 GDIYINTISGRTGEGL-DDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRY 407 I+I+ + + E + L + EI++L+ +S+L L TI Sbjct: 348 PIIFISAMYSKKLENVFKALSIVQAEISRLFPAGQLSSFLGR--ANLLLLGAKKTI---- 401 Query: 408 NRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQ 461 L+ I+Q++SS P+F+I C+ P+ I R + + R F+L P+++ ++ Sbjct: 402 -TLENISQVKSSIPTFIIQCSNPDNITTQQMRLVETQFRNYFNLRYSPLKIYYK 454 Score = 37.7 bits (86), Expect = 3.6, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 1/57 (1%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKN-HPIEIFDTAG 260 ++ +VG NVGKS L NRL+G + ++ ITRD V K+ H + + D+ G Sbjct: 11 KVLIVGATNVGKSQLFNRLIGDRHSIVLNRKSITRDLVMRKTKLKDQHEVILIDSGG 67 >gi|294892517|ref|XP_002774103.1| gtp-binding protein enga, putative [Perkinsus marinus ATCC 50983] gi|239879307|gb|EER05919.1| gtp-binding protein enga, putative [Perkinsus marinus ATCC 50983] Length = 727 Score = 130 bits (327), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 84/274 (30%), Positives = 143/274 (52%), Gaps = 10/274 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A VG PN GKS+L+N LL R++T + G T D++ W+++ H I +FDTAG+ + Sbjct: 409 MAFVGLPNAGKSSLVNALLKEERIITDTTPGTTTDTIVTDWSFREHKIRLFDTAGVFRGW 468 Query: 266 RITESLE-QKTVKKSMQSVRTCETTIVLLDAT------IPFEKQDLRIVDSVFNTGHAVV 318 E ++ +++R ++++D + +P + +L+++ G VV Sbjct: 469 AYKGDKELMGPGSETQRAIRFAHVVVIVVDGSRAERSHVP-NRAELKLLRMAVEMGKCVV 527 Query: 319 LALNKWDMVSD--KLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 +A+NKWD+V + K L Q T + Q+ + I IS +TG + +M V + + Sbjct: 528 VAINKWDLVEERHKEKLRQLYVTSTVNKSAQVKGMPIMFISAKTGFNVMMMMTRVQALFR 587 Query: 377 LWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPES 436 W R+ TS +N W++K Q PPP KY+TQ++S PP+F+ + P + Sbjct: 588 RWNGRVATSDINDWMRKFQEHYPPPWKDGVKFYPKYVTQVRSRPPTFVFWANTHGGFPPN 647 Query: 437 YKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 Y + + N +R F + G PIRM +S+ P KK Sbjct: 648 YMQQMRNLMREEFGMEGTPIRMLIRSTLMPDPKK 681 Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 60/232 (25%), Positives = 106/232 (45%), Gaps = 44/232 (18%) Query: 4 TIAIVGAPNVGKSTLFNRLVK--------KKMAVVGNHPGITRDRLYGQAIINGVIFNIV 55 T+ +VG PNVGKS+LFNRL ++ A+V G TRD + + + Sbjct: 51 TVCMVGRPNVGKSSLFNRLQSNNRNTENNRQKAIVYTAAGTTRDGKSAMCQLGRLKMMLH 110 Query: 56 DTAGIADG---KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKK-- 110 DT G+ D +N + ++M + A++ + ++F++D+K G+TP D + L K+ Sbjct: 111 DTPGLEDDSLTENSELLQKMRQKALEAVSRSDAVIFMVDAKEGVTPLDLKLARMLSKRVR 170 Query: 111 ------------------NIPIIIVSNKMDTRIAQRNF-----YEIYSLDFKEIVEISAE 147 I I++V+NK D ++F + Y L + V ISA Sbjct: 171 RLNELFKEKEQKGERSRPPISIVLVANKAD---GAQDFPTDAIADCYDLGLGDPVMISAT 227 Query: 148 HDLGTSELHSVIF----KIFKQKYPNHPLEMIENNKRNEESPKENITSEGKS 195 + GT +L+ + K + + E++E K +E++ + + EG S Sbjct: 228 KNEGTDDLYDRLMLDVGDRLKGAWADMDEEVVE-RKDDEDAIQTAMAREGPS 278 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 55/192 (28%), Positives = 83/192 (43%), Gaps = 38/192 (19%) Query: 206 IAVVGRPNVGKSTLINRLLGYNR--------LLTGSQSGITRDSVSISWNWKNHPIEIFD 257 + +VGRPNVGKS+L NRL NR + + +G TRD S + + D Sbjct: 52 VCMVGRPNVGKSSLFNRLQSNNRNTENNRQKAIVYTAAGTTRDGKSAMCQLGRLKMMLHD 111 Query: 258 TAGMRKPSRITESLE--QKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRI--------- 306 T G+ S +TE+ E QK +K++++V + I ++DA DL++ Sbjct: 112 TPGLEDDS-LTENSELLQKMRQKALEAVSRSDAVIFMVDAKEGVTPLDLKLARMLSKRVR 170 Query: 307 -VDSVFNTGH----------AVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINT 355 ++ +F ++VL NK D QD T AI + +G Sbjct: 171 RLNELFKEKEQKGERSRPPISIVLVANKADGA-------QDFPTDAIADCYDLGLGDPVM 223 Query: 356 ISGRTGEGLDDL 367 IS EG DDL Sbjct: 224 ISATKNEGTDDL 235 >gi|213027904|ref|ZP_03342351.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 153 Score = 127 bits (319), Expect = 4e-27, Method: Composition-based stats. Identities = 63/141 (44%), Positives = 90/141 (63%), Gaps = 1/141 (0%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A + G F +DT GI Sbjct: 12 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGI 71 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 DG + +M +Q+ LAI EA ++LF++D++AG+ P D AI LR + P +V+NK Sbjct: 72 -DGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANK 130 Query: 121 MDTRIAQRNFYEIYSLDFKEI 141 D + + YSL EI Sbjct: 131 TDGLDPDQAVVDFYSLGLGEI 151 Score = 48.5 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 52/120 (43%), Gaps = 3/120 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VGRPNVGKSTL NRL L G+TRD + DT G+ Sbjct: 16 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGI---D 72 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + +E + ++S+ ++ + + ++DA D I + + L NK D Sbjct: 73 GTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANKTD 132 >gi|323452265|gb|EGB08139.1| hypothetical protein AURANDRAFT_64089 [Aureococcus anophagefferens] Length = 552 Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 119/496 (23%), Positives = 207/496 (41%), Gaps = 98/496 (19%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGI-------------------------- 36 + +AIVG PNVGKSTLFN L + A PG Sbjct: 9 FQVAIVGRPNVGKSTLFNALRDVRSARERPAPGAASPTGKKSRQHRLPPTAQLTSPVART 68 Query: 37 TRDRLYGQAIINGVIFNIVDTAG--IADGKNCSIAKQ----------MNDQTELAINEAH 84 TRD + + F +VDTAG + DG S Q + D T + A Sbjct: 69 TRDVRSAPGRLGDLRFEVVDTAGLEVGDGAFRSAPPQRGAFPGMPAVLRDLTAGCVANAD 128 Query: 85 LILFLIDSKAGITPYDHAITSFLR--KKNIPIIIVSNKM--DTRIAQRNFYEIYSLDFKE 140 + L ++D AG+T DH + +LR ++P +++ NKM D ++A + +L Sbjct: 129 VALVVLDGAAGVTGDDHDVARWLRTAAGDVPRLVLFNKMENDRQVAAADLAFAETLARAA 188 Query: 141 IVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEESPKENITSEGKSSVKNI 200 + +SAEH G ++ L+ + S +E+ + ++ Sbjct: 189 PLSVSAEHGDGLPDV----------------LDALRAFAAAAPSTEED------ELLPSL 226 Query: 201 SKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAG 260 +R+A+VGRPNVGKSTL+N L N + + G+TRD+V + + + + DTAG Sbjct: 227 DDEVRVALVGRPNVGKSTLVNALARSNVAVAAPEPGVTRDAVECAVDVAGRAVRLVDTAG 286 Query: 261 MRK-----PSRIT-ESLEQKTVKKS-MQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNT 313 +R+ SR + +++E++ + + ++ C+ + ++D + P + DLR+ + Sbjct: 287 VRRVLEGTTSRASKDAVEERAARSTELEVGGRCDVAVFVVDCSGPLRRDDLRLARHLSEA 346 Query: 314 GHAVVLALNKWDMVSDKLNLL---------------------QDLRTKAIKNLPQIGDIY 352 VV+ NK D +L LR ++ L + Sbjct: 347 RLPVVVLANKVDAYRAGGAVLAGRGANAPSGDAARATAKDVEDGLRRSELRFLFDATNAP 406 Query: 353 INTISG--RTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRL 410 I S G L ++ + R++T LN+W + + + P F + Sbjct: 407 IVACSALESPGRARRALRFALKAHDANVAKRVSTGALNTWFRDFR-RGPRGEAF---AAV 462 Query: 411 KYITQIQSSPPSFLIF 426 +Y+ Q+ +PP+F +F Sbjct: 463 RYLAQVGHAPPTFALF 478 >gi|147862085|emb|CAN80885.1| hypothetical protein VITISV_016760 [Vitis vinifera] Length = 355 Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 80/295 (27%), Positives = 151/295 (51%), Gaps = 38/295 (12%) Query: 197 VKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIF 256 V+ PL++A+VGRPNVGKSTL+N LL NR+L G ++G+TRDSV + ++ + + Sbjct: 29 VEESKSPLQLAIVGRPNVGKSTLLNTLLQENRVLVGPEAGLTRDSVRAQFQFQGRTVYLV 88 Query: 257 DTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDAT------IPFEKQDLRIVDSV 310 DTAG + ++ + +V +S +S+ ++LDA + ++ I Sbjct: 89 DTAGWLQRTKQEKGPASLSVMQSRKSIMRAHVVALVLDAEEIANARSSMKHAEVVIARRA 148 Query: 311 FNTGHAVVLALNKWDMVSDKLN------LLQDLRTKAIKNLPQIGD---------IYINT 355 G +V+ +NK D++ + N +++ + + +PQ+ D +++ Sbjct: 149 VEEGRGLVVIVNKMDLLKGRKNSKLYEKVMEAVPEEIQMVIPQLLDVGIRIEEVIVFLVV 208 Query: 356 ISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYN------- 408 + G G +M V++ + W R++T+ LN WL+K + +R++ Sbjct: 209 FTSLEGRGRISVMRQVIDTYEKWCLRLSTARLNRWLRK---------VMSRHSWKDQAAQ 259 Query: 409 -RLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQS 462 ++KY TQ+++ PP+F+ F ++ + R+L L+ +F L GIPIR+ +S Sbjct: 260 PKIKYFTQVKARPPTFVAFMGGKTQLSNTDLRFLTKSLKEDFDLGGIPIRIMQRS 314 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 44/140 (31%), Positives = 70/140 (50%), Gaps = 14/140 (10%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAG----I 60 +AIVG PNVGKSTL N L+++ +VG G+TRD + Q G +VDTAG Sbjct: 38 LAIVGRPNVGKSTLLNTLLQENRVLVGPEAGLTRDSVRAQFQFQGRTVYLVDTAGWLQRT 97 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKA---GITPYDHAITSFLRK---KNIPI 114 K + M Q+ +I AH++ ++D++ + HA R+ + + Sbjct: 98 KQEKGPASLSVM--QSRKSIMRAHVVALVLDAEEIANARSSMKHAEVVIARRAVEEGRGL 155 Query: 115 IIVSNKMDTRIAQRN--FYE 132 +++ NKMD ++N YE Sbjct: 156 VVIVNKMDLLKGRKNSKLYE 175 >gi|315282971|ref|ZP_07871260.1| GTP-binding protein EngA [Listeria marthii FSL S4-120] gi|313613383|gb|EFR87238.1| GTP-binding protein EngA [Listeria marthii FSL S4-120] Length = 191 Score = 126 bits (316), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 65/170 (38%), Positives = 103/170 (60%), Gaps = 5/170 (2%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 +AIVG PNVGKST+FNR+V +++++V + PG+TRDR+Y A G FNI+DT GI D Sbjct: 5 VVAIVGRPNVGKSTIFNRIVGERVSIVEDVPGVTRDRIYNSAEWLGKEFNIIDTGGI-DL 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + +Q+ Q E+AI+EA +I+F+ + + G+T D + L + N PI++ NK+D Sbjct: 64 SDEPFLEQIRAQAEIAIDEADVIIFITNGREGVTDADEQVAKILYRSNKPIVLAINKVDN 123 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF----KQKYPN 169 + Y+ Y+L F E IS H LG ++ + F +++YP+ Sbjct: 124 PEMRDQIYDFYALGFGEPYPISGSHGLGLGDMLDAVRAHFPKEEEEEYPD 173 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 82/172 (47%), Gaps = 13/172 (7%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 ++KP+ +A+VGRPNVGKST+ NR++G + G+TRD + S W I DT Sbjct: 1 MAKPV-VAIVGRPNVGKSTIFNRIVGERVSIVEDVPGVTRDRIYNSAEWLGKEFNIIDTG 59 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+ E ++ ++ ++ + I + + D ++ ++ + +VL Sbjct: 60 GIDLSD---EPFLEQIRAQAEIAIDEADVIIFITNGREGVTDADEQVAKILYRSNKPIVL 116 Query: 320 ALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSV 371 A+NK D ++R + I + +G ISG G GL D++ +V Sbjct: 117 AINKVDN--------PEMRDQ-IYDFYALGFGEPYPISGSHGLGLGDMLDAV 159 >gi|4583532|gb|AAD25116.1|AF140550_7 YfgK [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 268 Score = 126 bits (316), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 73/243 (30%), Positives = 126/243 (51%), Gaps = 2/243 (0%) Query: 228 RLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCE 287 RL+ G TRDS+ I + DTAG+RK +IT+++E+ +V K++Q++ Sbjct: 5 RLVVYDMPGTTRDSIYIPMERDEREYVLIDTAGVRKRGKITDAVEKFSVIKTLQAIEDAN 64 Query: 288 TTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQ 347 ++++DA QDL ++ + N+G ++V+ +NKWD +S ++ + ++ L Sbjct: 65 VVLLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWDGLSQEVK--EQVKETLDFRLGF 122 Query: 348 IGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRY 407 I ++ IS G G+ +L SV E R++T+ L + + PP + R Sbjct: 123 IDFARVHFISALHGSGVGNLFESVREAYDSSTRRVSTAMLTRIMTMAVEDHQPPLVRGRR 182 Query: 408 NRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 +LKY +PP +I +P+SYKRYL+N R + + G PIR+ F+ +NPY Sbjct: 183 VKLKYAHAGGYNPPIVVIHGNQVKDLPDSYKRYLMNYFRKSLEVMGTPIRIQFKEGENPY 242 Query: 468 IKK 470 K Sbjct: 243 ANK 245 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 40/140 (28%), Positives = 71/140 (50%), Gaps = 9/140 (6%) Query: 25 KKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD-GKNCSIAKQMND-QTELAINE 82 KK VV + PG TRD +Y + + ++DTAG+ GK ++ + +T AI + Sbjct: 3 KKRLVVYDMPGTTRDSIYIPMERDEREYVLIDTAGVRKRGKITDAVEKFSVIKTLQAIED 62 Query: 83 AHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD-------TRIAQRNFYEIYS 135 A+++L +ID++ GI+ D ++ F+ ++IV NK D ++ + + + Sbjct: 63 ANVVLLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWDGLSQEVKEQVKETLDFRLGF 122 Query: 136 LDFKEIVEISAEHDLGTSEL 155 +DF + ISA H G L Sbjct: 123 IDFARVHFISALHGSGVGNL 142 >gi|7595274|gb|AAF64397.1|AF148553_1 hypothetical protein [Thiobacillus denitrificans] Length = 281 Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 74/256 (28%), Positives = 130/256 (50%), Gaps = 4/256 (1%) Query: 217 STLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTV 276 STL+N L+G R++ Q G TRDS+ + + P + DTAG+R+ ++ E++E+ +V Sbjct: 1 STLVNALVGEERVIAFDQPGTTRDSIYVEFERGGKPYVLIDTAGVRRKGKVFETVEKFSV 60 Query: 277 KKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQD 336 K++Q++ +++LDA +QD + V TG A+V+A+NKWD +S + D Sbjct: 61 IKTLQAIEDANVVVLVLDARENISEQDAHLAGFVLETGRALVVAVNKWDGLSPEQR--DD 118 Query: 337 LRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQL 396 ++ + L + N IS G+GL+ L+ V + +++T L L+ Sbjct: 119 VKRDIGRKLAFLDFARFNYISALKGKGLESLLKDVEAAHAAAFIKMSTPKLTRVLEMAVE 178 Query: 397 QNPPPTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 Q+ PP + +Y Q +PP ++ + + YKRYL + R F L G P+ Sbjct: 179 QHAPPKNGLFRPKPRYAHQGGKNPPVIILHGNALEGLRDDYKRYLESSFRKAFKLQGTPL 238 Query: 457 RMCFQ--SSKNPYIKK 470 R+ + +NP+ K Sbjct: 239 RIQVKEDEGRNPFEGK 254 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 30/109 (27%), Positives = 60/109 (55%), Gaps = 2/109 (1%) Query: 16 STLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI-ADGKNCSIAKQMND 74 STL N LV ++ + + PG TRD +Y + G + ++DTAG+ GK ++ + Sbjct: 1 STLVNALVGEERVIAFDQPGTTRDSIYVEFERGGKPYVLIDTAGVRRKGKVFETVEKFSV 60 Query: 75 -QTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 +T AI +A++++ ++D++ I+ D + F+ + +++ NK D Sbjct: 61 IKTLQAIEDANVVVLVLDARENISEQDAHLAGFVLETGRALVVAVNKWD 109 >gi|301167244|emb|CBW26826.1| putative GTP-binding protein [Bacteriovorax marinus SJ] Length = 613 Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 89/286 (31%), Positives = 138/286 (48%), Gaps = 47/286 (16%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKM-AVVGNHPGITRDRLYGQAII------NGVIFNIVDT 57 ++++G PNVGKS+LFNRL++K+ A+ + PG+TRDR YG I + +VDT Sbjct: 8 VSLIGRPNVGKSSLFNRLMQKQHKAITHDQPGVTRDRHYGITTIEDLQDVDAADIILVDT 67 Query: 58 AGI------ADGKNCSIAKQ------MNDQTELAINEAHLILFLIDSKAGITPYDHAITS 105 G G+N M D +AI E+ L+LF++D + G P+D+ I Sbjct: 68 GGFYPERIDERGRNSEEENANKFFNIMTDHARMAIGESDLVLFVVDVREGALPFDNTIAD 127 Query: 106 FLRKKNIPIIIVSNKMDTRIAQRNFYEIYSL--DFKEIVEISAEHDLGTSELHSVIFKIF 163 ++R P ++V+NK D+ + YSL D E+ SA H G + L I ++ Sbjct: 128 YIRTTKKPFLVVANKYDSDKQAGEEIDFYSLGIDSDELFTTSATHGRGVTFLREKIQRL- 186 Query: 164 KQKYPNHPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRL 223 ++ N L+ + + +P+E + S +IA++G PN GKSTL+N L Sbjct: 187 ASEFSNGALKSMPEISKG-VTPREEVVS-------------KIALIGAPNAGKSTLLNLL 232 Query: 224 LGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITE 269 +G R L +G T D PIE F K ++I E Sbjct: 233 VGAQRALVSDIAGTTVD-----------PIEGFFDLYFGKEAKILE 267 Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 67/228 (29%), Positives = 123/228 (53%), Gaps = 15/228 (6%) Query: 247 NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRI 306 +W++ I I DTAG+R+ + +E ++V +S++S+ + IV++DAT QD R+ Sbjct: 376 HWRS--IHIIDTAGIRRQKTVNGFIESQSVYRSLRSITESDVVIVMIDATNGIGHQDRRL 433 Query: 307 VDSVFNTGHAVVLALNKWDMVSDKL-------NLLQDLRTKAIKNLPQIGDIYINTISGR 359 +D G +V++ALNK D++ ++L L +LR +++P + I TIS + Sbjct: 434 IDISLEKGKSVIVALNKMDLMREQLPDEAAKREWLNNLR----RDIPWLDFCDIITISAK 489 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNP--PPTIFNRYNRLKYITQIQ 417 +G+ L ++ + + I T LN ++ +NP + + ++KY + I+ Sbjct: 490 HNKGMKKLKEALKKTILVRSRNIPTGELNRFVFDLVERNPVIAKSQGAKRFKVKYTSMIK 549 Query: 418 SSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 S PP+FL+F IPE Y+RYL+N +R F L P+ + F++ + Sbjct: 550 SGPPTFLMFTNKSQGIPEHYRRYLVNSIRSGFKLYNTPVHLIFRTGND 597 Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 72/151 (47%), Gaps = 27/151 (17%) Query: 201 SKPLRIAVVGRPNVGKSTLINRLL-GYNRLLTGSQSGITRD------SVSISWNWKNHPI 253 ++ + ++++GRPNVGKS+L NRL+ ++ +T Q G+TRD ++ + I Sbjct: 3 NRSMVVSLIGRPNVGKSSLFNRLMQKQHKAITHDQPGVTRDRHYGITTIEDLQDVDAADI 62 Query: 254 EIFDTAGMRKPSRITE---SLEQKTVKK------SMQSVRTCETTIVLL-----DATIPF 299 + DT G P RI E + E++ K + E+ +VL + +PF Sbjct: 63 ILVDTGGFY-PERIDERGRNSEEENANKFFNIMTDHARMAIGESDLVLFVVDVREGALPF 121 Query: 300 EKQDLRIVDSVFNTGHAVVLALNKWDMVSDK 330 D I D + T ++ NK+D SDK Sbjct: 122 ---DNTIADYIRTTKKPFLVVANKYD--SDK 147 Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust. Identities = 39/133 (29%), Positives = 64/133 (48%), Gaps = 14/133 (10%) Query: 53 NIVDTAGIADGK--NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKK 110 +I+DTAGI K N I Q ++ +I E+ +++ +ID+ GI D + +K Sbjct: 381 HIIDTAGIRRQKTVNGFIESQSVYRSLRSITESDVVIVMIDATNGIGHQDRRLIDISLEK 440 Query: 111 NIPIIIVSNKMD-------TRIAQRNFY-----EIYSLDFKEIVEISAEHDLGTSELHSV 158 +I+ NKMD A+R + +I LDF +I+ ISA+H+ G +L Sbjct: 441 GKSVIVALNKMDLMREQLPDEAAKREWLNNLRRDIPWLDFCDIITISAKHNKGMKKLKEA 500 Query: 159 IFKIFKQKYPNHP 171 + K + N P Sbjct: 501 LKKTILVRSRNIP 513 Score = 41.6 bits (96), Expect = 0.31, Method: Compositional matrix adjust. Identities = 20/43 (46%), Positives = 28/43 (65%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYG 43 ++ IA++GAPN GKSTL N LV + A+V + G T D + G Sbjct: 211 VVSKIALIGAPNAGKSTLLNLLVGAQRALVSDIAGTTVDPIEG 253 >gi|169827484|ref|YP_001697642.1| GTP-binding protein [Lysinibacillus sphaericus C3-41] gi|168991972|gb|ACA39512.1| GTP-binding protein [Lysinibacillus sphaericus C3-41] Length = 231 Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 64/225 (28%), Positives = 119/225 (52%) Query: 235 SGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLD 294 G TRD++ + +++ I DTAGMRK +I E+ E+ +V ++++++ + +V+L+ Sbjct: 2 QGTTRDAIDTPYAYEDQEYVIIDTAGMRKKGKIYETTEKYSVLRALRAIERSDVVLVVLN 61 Query: 295 ATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYIN 354 A ++QD +I G AVV+ +NKWD + + + ++ + I Sbjct: 62 AEEGIQEQDKKIAGYAHEAGKAVVIVVNKWDAIEKDEKTMNVFTQQIREHFLFLDYAPII 121 Query: 355 TISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYIT 414 +S T + + ++ + +++ RI +S LN ++ + +NP PT R R+ Y T Sbjct: 122 FVSANTKQRVHQILPIIQRVSENHAMRIQSSILNEVIEDSVARNPAPTDKGRRLRIYYAT 181 Query: 415 QIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 Q+ PP+F++F P + SY+R+L NR+R F G PIR+ Sbjct: 182 QVAIKPPTFVVFVNEPELMHFSYERFLENRIRETFDFEGTPIRLI 226 >gi|46205398|ref|ZP_00048589.2| COG1160: Predicted GTPases [Magnetospirillum magnetotacticum MS-1] Length = 135 Score = 123 bits (308), Expect = 7e-26, Method: Composition-based stats. Identities = 57/117 (48%), Positives = 80/117 (68%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AIVG PNVGKSTLFNRLV +K+A+V + PG+TRDR G I V F I+DTAG+ + Sbjct: 5 TVAIVGRPNVGKSTLFNRLVGRKLALVDDRPGVTRDRREGDGSIGDVTFRIIDTAGLEEA 64 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 S+ +M QTE AI E+ +LF+ID++AG+ P D +R+ P+I+++NK Sbjct: 65 DADSLLGRMRAQTEAAILESDAVLFVIDARAGVLPADRPFAELVRRAGCPVILIANK 121 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 37/118 (31%), Positives = 58/118 (49%), Gaps = 2/118 (1%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VGRPNVGKSTL NRL+G L + G+TRD + + I DTAG+ + Sbjct: 6 VAIVGRPNVGKSTLFNRLVGRKLALVDDRPGVTRDRREGDGSIGDVTFRIIDTAGLEEAD 65 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 +SL + ++ ++ + + ++DA D + V G V+L NK Sbjct: 66 --ADSLLGRMRAQTEAAILESDAVLFVIDARAGVLPADRPFAELVRRAGCPVILIANK 121 >gi|266624277|ref|ZP_06117212.1| GTP-binding protein EngA [Clostridium hathewayi DSM 13479] gi|288863885|gb|EFC96183.1| GTP-binding protein EngA [Clostridium hathewayi DSM 13479] Length = 189 Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 73/212 (34%), Positives = 105/212 (49%), Gaps = 29/212 (13%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTLFN L +++V + PG+TRDR+Y F ++DT GI Sbjct: 6 VAIVGRPNVGKSTLFNVLAGDTISIVKDTPGVTRDRIYADCTWLDKNFTLIDTGGIEPDS 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 + I QM +Q E+AI A +I+F++D + G+ D + LRK P+++ NK+D+ Sbjct: 66 SDIILSQMREQAEIAIATADVIVFIVDVRQGLVDADSKVADMLRKSKKPVVLAVNKVDSF 125 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + YE Y+L + V +SA LG EL + K F Sbjct: 126 EKFGNDVYEFYNLGIGDPVPVSAASRLGLGELLDEVIKYF-------------------- 165 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVG 215 EG +P RIA+VG+PNVG Sbjct: 166 -------GEGTGEETEDDRP-RIAIVGKPNVG 189 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 40/129 (31%), Positives = 65/129 (50%), Gaps = 9/129 (6%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 +SKP+ +A+VGRPNVGKSTL N L G + G+TRD + W + + DT Sbjct: 1 MSKPV-VAIVGRPNVGKSTLFNVLAGDTISIVKDTPGVTRDRIYADCTWLDKNFTLIDTG 59 Query: 260 GMRKPSR---ITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHA 316 G+ S +++ EQ + ++ T + + ++D D ++ D + + Sbjct: 60 GIEPDSSDIILSQMREQAEI-----AIATADVIVFIVDVRQGLVDADSKVADMLRKSKKP 114 Query: 317 VVLALNKWD 325 VVLA+NK D Sbjct: 115 VVLAVNKVD 123 >gi|124805918|ref|XP_001350575.1| GTP binding protein, putative [Plasmodium falciparum 3D7] gi|23496699|gb|AAN36255.1| GTP binding protein, putative [Plasmodium falciparum 3D7] Length = 874 Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 89/367 (24%), Positives = 171/367 (46%), Gaps = 35/367 (9%) Query: 108 RKKNIPIIIVSNKMDTRIAQRNFY---EIYSLDFKEIVEISAEHDLGTSELHSVIFKIFK 164 +K ++ +I+ NK ++ + FY E +SL F S H G SE+ K Sbjct: 499 KKLHLKVILCVNKCES--YKDGFYKAQEFWSLGFGNPFPCSGIHGNGLSEILDECIK--- 553 Query: 165 QKYPNHPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLL 224 ++ I+ N+ +++ ++N + I+ +G+PN GKS+++N++L Sbjct: 554 ------HIDKIKINEEHDDINEQN--------------TINISFIGKPNTGKSSILNKIL 593 Query: 225 GYNRLLTGSQSGITRDSVSISWNWK--NHPIEIFDTAGMRK-----PSRITESLEQKTVK 277 NR + +G T DS+ + K + + DTAG++K P E Sbjct: 594 NCNRFIVSPLAGTTVDSIDVLVKLKQSDRIYRLIDTAGIQKRKKNVPFNNKTKYEYLLYN 653 Query: 278 KSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDL 337 ++ ++++ + I+++D+ QD+ I + + ++ NKWD++ +K ++ D Sbjct: 654 RTEKAIKRSDVCILVIDSFNGISTQDINIARKIVQENKSCIICCNKWDLIYNKNDIFNDT 713 Query: 338 RTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQ 397 + + L I I IS +T + L ++ E K + R+ T+ LN +++ L Sbjct: 714 KNYVLNLLKPIDFSNIIFISAKTSQRLLNIFHLAEETYKNYTKRVNTNTLNDIIKEALLL 773 Query: 398 NPPPTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIR 457 PP I N+ + Y Q PPSF+ FC + +Y +YL N++R F + G PI+ Sbjct: 774 RPPIPIKNKSLNIYYAFQSHIKPPSFVFFCNSEKSVYANYTKYLENKIREAFDIKGTPIK 833 Query: 458 MCFQSSK 464 + ++ K Sbjct: 834 IYYKQKK 840 Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 42/106 (39%), Positives = 65/106 (61%), Gaps = 2/106 (1%) Query: 5 IAIVGAPNVGKSTLFNRLVKK-KMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 I+I+G PNVGKST+FNRL +K + + TRD+LYG+ G F +VDT G+ Sbjct: 311 ISIIGRPNVGKSTIFNRLTRKYQDGSIVLDVSSTRDKLYGEVEWEGYKFELVDTGGLVFE 370 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRK 109 + +K++ DQ +A+ E+ +++F++D G+ P D I FLRK Sbjct: 371 QE-KFSKEIKDQILMALKESSVVIFVVDGIHGVDPRDIEICRFLRK 415 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 49/184 (26%), Positives = 87/184 (47%), Gaps = 22/184 (11%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAII--NGVIFNIVDTAGIAD 62 I+ +G PN GKS++ N+++ +V G T D + + + I+ ++DTAGI Sbjct: 575 ISFIGKPNTGKSSILNKILNCNRFIVSPLAGTTVDSIDVLVKLKQSDRIYRLIDTAGIQK 634 Query: 63 -GKNCSIAKQ------MNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPII 115 KN + + ++TE AI + + + +IDS GI+ D I + ++N I Sbjct: 635 RKKNVPFNNKTKYEYLLYNRTEKAIKRSDVCILVIDSFNGISTQDINIARKIVQENKSCI 694 Query: 116 IVSNKMDTRIAQRNFYE---------IYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQK 166 I NK D + + + + +DF I+ ISA+ TS+ IF + ++ Sbjct: 695 ICCNKWDLIYNKNDIFNDTKNYVLNLLKPIDFSNIIFISAK----TSQRLLNIFHLAEET 750 Query: 167 YPNH 170 Y N+ Sbjct: 751 YKNY 754 Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust. Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 9/108 (8%) Query: 203 PLRIAVVGRPNVGKSTLINRLLGYNRLLTGS---QSGITRDSVSISWNWKNHPIEIFDTA 259 PL I+++GRPNVGKST+ NRL + GS TRD + W+ + E+ DT Sbjct: 309 PL-ISIIGRPNVGKSTIFNRLT--RKYQDGSIVLDVSSTRDKLYGEVEWEGYKFELVDTG 365 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIV 307 G+ E ++ + + +++ I ++D + +D+ I Sbjct: 366 GLVFEQ---EKFSKEIKDQILMALKESSVVIFVVDGIHGVDPRDIEIC 410 >gi|221061357|ref|XP_002262248.1| gtp binding protein [Plasmodium knowlesi strain H] gi|193811398|emb|CAQ42126.1| gtp binding protein, putative [Plasmodium knowlesi strain H] Length = 831 Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 70/270 (25%), Positives = 135/270 (50%), Gaps = 7/270 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHP--IEIFDTAGMRK 263 I+ +G+PN GKS+++N++L NR + +G T DS+ + K+ + DTAG++K Sbjct: 530 ISFIGKPNTGKSSILNKILNCNRFIVSPIAGTTVDSIDVLVKIKDSDRIYRLIDTAGIQK 589 Query: 264 -----PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVV 318 P E ++ ++++ + I+++D+ D+ I + + + Sbjct: 590 RKKNIPFSEKTKYEYLLFNRTEKAIKRSDVCILVIDSFNGISSHDINIARKIVQENKSCI 649 Query: 319 LALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLW 378 + NKWD++ +K ++ D + + L + I IS +T + L ++ + E K + Sbjct: 650 ICCNKWDLIYNKNDIFNDTKNYVLNLLKPVDFANILFISAKTSQRLLNIFDNAEETYKQY 709 Query: 379 KTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYK 438 +I T+ LN +++ L PP I N+ + Y Q PP F+ FC E+Y Sbjct: 710 TRKINTNSLNDVIKEALLLRPPIPIRNKSLNIYYAFQAHIKPPGFVFFCNSRKCAYENYT 769 Query: 439 RYLINRLRINFSLSGIPIRMCFQSSKNPYI 468 +YL +R+R +F++ G PIR+ ++ K Y+ Sbjct: 770 KYLESRIRESFNIRGTPIRIYYKQKKKRYL 799 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 62/166 (37%), Positives = 90/166 (54%), Gaps = 24/166 (14%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMA---VVGNHPGITRDRLYGQAIINGVIFNIVDTAGI- 60 I+I+G PNVGKST+FNRL +K V+G TRD++YG+ +G F +VDT G+ Sbjct: 262 ISIIGRPNVGKSTIFNRLTRKFQEGSIVLGESS--TRDKIYGEVDWDGYKFEVVDTGGLI 319 Query: 61 -ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 D K C KQ+ DQ LA+ E+ ++LF++D G+ P D I FLRK + N Sbjct: 320 FEDEKFC---KQIRDQIMLALKESSVVLFVVDGIKGVHPVDLEICRFLRK------YIKN 370 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEH-------DLGTSELHSV 158 + +++A R ++ E+ E SAE GTSE +V Sbjct: 371 EYISKMAIRK-KRTGQVNHDEVAEHSAEDASKSSNTSSGTSERFAV 415 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 66/127 (51%), Gaps = 9/127 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAII--NGVIFNIVDTAGIAD 62 I+ +G PN GKS++ N+++ +V G T D + I + I+ ++DTAGI Sbjct: 530 ISFIGKPNTGKSSILNKILNCNRFIVSPIAGTTVDSIDVLVKIKDSDRIYRLIDTAGIQK 589 Query: 63 -GKNCSIAKQ------MNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPII 115 KN +++ + ++TE AI + + + +IDS GI+ +D I + ++N I Sbjct: 590 RKKNIPFSEKTKYEYLLFNRTEKAIKRSDVCILVIDSFNGISSHDINIARKIVQENKSCI 649 Query: 116 IVSNKMD 122 I NK D Sbjct: 650 ICCNKWD 656 Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 36/62 (58%), Gaps = 6/62 (9%) Query: 203 PLRIAVVGRPNVGKSTLINRL---LGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 PL I+++GRPNVGKST+ NRL ++ G S TRD + +W + E+ DT Sbjct: 260 PL-ISIIGRPNVGKSTIFNRLTRKFQEGSIVLGESS--TRDKIYGEVDWDGYKFEVVDTG 316 Query: 260 GM 261 G+ Sbjct: 317 GL 318 >gi|255593008|ref|XP_002535771.1| GTP-binding protein enga, putative [Ricinus communis] gi|223522018|gb|EEF26612.1| GTP-binding protein enga, putative [Ricinus communis] Length = 236 Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 71/239 (29%), Positives = 120/239 (50%), Gaps = 10/239 (4%) Query: 236 GITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDA 295 G TRDS+ I + + DTAG+R+ ++ E++E+ +V K++Q++ +++LDA Sbjct: 3 GTTRDSIHIDFERDGKQYTLVDTAGVRRRGKVFEAIEKFSVIKTLQAIEDANVVVLVLDA 62 Query: 296 TIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQ----IGDI 351 +QD + V TG A+V+A+NKWD L ++ R + K++ + + Sbjct: 63 QDTITEQDGSLAAFVLETGRALVVAINKWD------GLKEEQRDQVKKDIDRKLHFLTYA 116 Query: 352 YINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLK 411 + +S G+GL LM SV ++++T L L+ Q+ PP +L+ Sbjct: 117 KFHYLSALKGQGLPPLMKSVDAAYAAAMSKLSTPKLTRVLEAAVQQHQPPVSGAVRPKLR 176 Query: 412 YITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 Y Q +PP +I KIP SY+RYL R F L+G P+ + F+ NP+ K Sbjct: 177 YAHQGGKNPPIIVIHGNHVTKIPASYRRYLEGFFRKAFELTGTPLVIQFKQGANPFADK 235 Score = 40.8 bits (94), Expect = 0.48, Method: Compositional matrix adjust. Identities = 25/91 (27%), Positives = 50/91 (54%), Gaps = 2/91 (2%) Query: 34 PGITRDRLYGQAIINGVIFNIVDTAGIADGKNC--SIAKQMNDQTELAINEAHLILFLID 91 PG TRD ++ +G + +VDTAG+ +I K +T AI +A++++ ++D Sbjct: 2 PGTTRDSIHIDFERDGKQYTLVDTAGVRRRGKVFEAIEKFSVIKTLQAIEDANVVVLVLD 61 Query: 92 SKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 ++ IT D ++ +F+ + +++ NK D Sbjct: 62 AQDTITEQDGSLAAFVLETGRALVVAINKWD 92 >gi|302846043|ref|XP_002954559.1| hypothetical protein VOLCADRAFT_121318 [Volvox carteri f. nagariensis] gi|300260231|gb|EFJ44452.1| hypothetical protein VOLCADRAFT_121318 [Volvox carteri f. nagariensis] Length = 269 Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 70/220 (31%), Positives = 120/220 (54%), Gaps = 6/220 (2%) Query: 202 KPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNW-KNHPIEIFDTAG 260 +PL +A+VGRPNVGKS+L+N + G R + SG TRD+V + + DTAG Sbjct: 48 QPLAVAIVGRPNVGKSSLLNAIAGEERSIVCDLSGTTRDAVDTRVTLPGGQRLTLIDTAG 107 Query: 261 MRKPSRITES---LEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 +RK SR+ +S EQ +V ++M++VR + ++++DA +QD R+ + + G +V Sbjct: 108 IRKRSRVADSPDGAEQLSVDRAMRAVRRADVAVLVIDAVEGVTQQDFRLSELFASEGKSV 167 Query: 318 VLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKL 377 V+ +NKWD V ++ ++ + L + + S +G ++D++ +VL+ K Sbjct: 168 VVVVNKWDRVDPRIWSVEKMAENVKTQLRHVSWASVVCTSAISGRHVEDVLEAVLDAGKQ 227 Query: 378 WKTRITTSYLNSWLQKTQLQNPPPTIFN--RYNRLKYITQ 415 + R+ T+ LN L++ PPT R R+ Y TQ Sbjct: 228 HRRRVPTATLNMVLREATQWKAPPTQRGSLRKGRIYYATQ 267 Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 49/202 (24%), Positives = 94/202 (46%), Gaps = 22/202 (10%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAII-NGVIFNIVDTAGI-- 60 +AIVG PNVGKS+L N + ++ ++V + G TRD + + + G ++DTAGI Sbjct: 51 AVAIVGRPNVGKSSLLNAIAGEERSIVCDLSGTTRDAVDTRVTLPGGQRLTLIDTAGIRK 110 Query: 61 ----ADGKNCSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPII 115 AD + A+Q++ D+ A+ A + + +ID+ G+T D ++ + ++ Sbjct: 111 RSRVADSPDG--AEQLSVDRAMRAVRRADVAVLVIDAVEGVTQQDFRLSELFASEGKSVV 168 Query: 116 IVSNKMD---------TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQ- 165 +V NK D ++A+ ++ + + +V SA ++ + KQ Sbjct: 169 VVVNKWDRVDPRIWSVEKMAENVKTQLRHVSWASVVCTSAISGRHVEDVLEAVLDAGKQH 228 Query: 166 --KYPNHPLEMIENNKRNEESP 185 + P L M+ ++P Sbjct: 229 RRRVPTATLNMVLREATQWKAP 250 >gi|289612668|emb|CBI60058.1| unnamed protein product [Sordaria macrospora] Length = 158 Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 62/166 (37%), Positives = 94/166 (56%), Gaps = 20/166 (12%) Query: 83 AHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQRNFYEIYSLDFKEIV 142 A + LF+ID++AGITP D I +LR + +++V+NK + R + E +L F + V Sbjct: 2 ADVALFMIDARAGITPLDEEIARWLRSADGTVVLVANKAEGRAGENGVLESLALGFGDPV 61 Query: 143 EISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEESPKENITSEGKSSVKNISK 202 ++SAEH G ++L + Q Y +E E + + Sbjct: 62 QLSAEHGEGVADLFEAL-----QPYIER---------------EEEPEPEEEGEYDPETA 101 Query: 203 PLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNW 248 L++A+VGRPN GKSTLINR LG +RL+TG ++GITRDS+++ WNW Sbjct: 102 VLKLAIVGRPNAGKSTLINRFLGEDRLITGPEAGITRDSIAVDWNW 147 Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust. Identities = 19/40 (47%), Positives = 25/40 (62%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRL 41 + +AIVG PN GKSTL NR + + + G GITRD + Sbjct: 102 VLKLAIVGRPNAGKSTLINRFLGEDRLITGPEAGITRDSI 141 >gi|156103153|ref|XP_001617269.1| GTP-binding protein [Plasmodium vivax SaI-1] gi|148806143|gb|EDL47542.1| GTP-binding protein, putative [Plasmodium vivax] Length = 864 Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 69/268 (25%), Positives = 134/268 (50%), Gaps = 7/268 (2%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHP--IEIFDTAGM 261 + I+ +G+PN GKS+++N++L NR + +G T DS+ + K+ + DTAG+ Sbjct: 561 INISFIGKPNTGKSSILNKILNCNRFIVSPIAGTTVDSIDVLVKIKDSDRIYRLIDTAGI 620 Query: 262 RK-----PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHA 316 +K P E ++ ++++ + I+++D+ QD+ I + + Sbjct: 621 QKRKKNVPFNEKTKYEYLLFNRTEKAIKRSDVCILVIDSFNGISSQDINIARKIVQENKS 680 Query: 317 VVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 ++ NKWD++ +K ++ D + + L + I IS +T + L ++ E K Sbjct: 681 CIICCNKWDLIYNKNDIFNDTKNYVLNLLKPVDFANILFISAKTSQRLLNIFDHAEETYK 740 Query: 377 LWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPES 436 + +I T+ LN +++ L PP I N+ + Y Q PP F+ FC E+ Sbjct: 741 QYTRKINTNSLNDVIKEALLLRPPIPIRNKSLNIYYAFQTHIKPPGFVFFCNSHKCAYEN 800 Query: 437 YKRYLINRLRINFSLSGIPIRMCFQSSK 464 Y +YL +R+R +F++ G PIR+ ++ + Sbjct: 801 YTKYLESRIRESFNIRGTPIRIYYKEKR 828 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 49/110 (44%), Positives = 68/110 (61%), Gaps = 10/110 (9%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMA---VVGNHPGITRDRLYGQAIINGVIFNIVDTAGI- 60 I+I+G PNVGKST+FNRL +K V+G TRD++YG+ +G F +VDT G+ Sbjct: 287 ISIIGRPNVGKSTIFNRLTRKFQEGSIVLGESS--TRDKIYGEVDWDGYKFEVVDTGGLL 344 Query: 61 -ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRK 109 D K C KQ+ DQ LA+NE+ ++L ++D G+ P D I FLRK Sbjct: 345 FEDEKFC---KQIRDQIMLALNESSVVLLVVDGINGVHPVDLEICRFLRK 391 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 6/64 (9%) Query: 201 SKPLRIAVVGRPNVGKSTLINRL---LGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 S PL I+++GRPNVGKST+ NRL ++ G S TRD + +W + E+ D Sbjct: 283 SLPL-ISIIGRPNVGKSTIFNRLTRKFQEGSIVLGESS--TRDKIYGEVDWDGYKFEVVD 339 Query: 258 TAGM 261 T G+ Sbjct: 340 TGGL 343 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 76/161 (47%), Gaps = 18/161 (11%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAII--NGVIFNIVDTAGIAD 62 I+ +G PN GKS++ N+++ +V G T D + I + I+ ++DTAGI Sbjct: 563 ISFIGKPNTGKSSILNKILNCNRFIVSPIAGTTVDSIDVLVKIKDSDRIYRLIDTAGIQK 622 Query: 63 -GKNCSIAKQMN------DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPII 115 KN ++ ++TE AI + + + +IDS GI+ D I + ++N I Sbjct: 623 RKKNVPFNEKTKYEYLLFNRTEKAIKRSDVCILVIDSFNGISSQDINIARKIVQENKSCI 682 Query: 116 IVSNKMDTRIAQRNFYE---------IYSLDFKEIVEISAE 147 I NK D + + + + +DF I+ ISA+ Sbjct: 683 ICCNKWDLIYNKNDIFNDTKNYVLNLLKPVDFANILFISAK 723 >gi|312601040|gb|ADQ90295.1| GTP-binding protein engA [Mycoplasma hyopneumoniae 168] Length = 214 Score = 116 bits (290), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 61/210 (29%), Positives = 111/210 (52%) Query: 253 IEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFN 312 +EI DTAG+RK S++ ES++ ++ +S+ + T++LLDA F DLRI F Sbjct: 1 MEIIDTAGIRKKSKLAESVDFYAFLRAFRSLDQADLTLILLDACQDFHHFDLRIAGYAFE 60 Query: 313 TGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVL 372 ++L +NKWD++ Q+ K + + IS +TGE + L+ + Sbjct: 61 RNKPIILVINKWDLIQKDTRTQQEYLRKIKGKFKFLDWAPVVFISAKTGEKIHKLIDVIF 120 Query: 373 EINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFLIFCTFPNK 432 ++ + +I+T+ LN +L + Q+ P P + + ++ QI P+F+ F T N Sbjct: 121 QVKNNLEKKISTNLLNQFLMEIQMIQPHPNVNGKKVYFNFLEQIYGKIPTFIFFVTDKNL 180 Query: 433 IPESYKRYLINRLRINFSLSGIPIRMCFQS 462 + SY+RY+ N++R F G PI++ +++ Sbjct: 181 VHFSYQRYIENQMRKYFDFFGCPIKIIYKN 210 Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust. Identities = 38/122 (31%), Positives = 61/122 (50%), Gaps = 15/122 (12%) Query: 54 IVDTAGIADGKNCSIAKQMNDQTEL----AINEAHLILFLIDSKAGITPYDHAITSFLRK 109 I+DTAGI K +A+ ++ L ++++A L L L+D+ +D I + + Sbjct: 3 IIDTAGIR--KKSKLAESVDFYAFLRAFRSLDQADLTLILLDACQDFHHFDLRIAGYAFE 60 Query: 110 KNIPIIIVSNKM-----DTRIAQRNFYEIYS----LDFKEIVEISAEHDLGTSELHSVIF 160 +N PII+V NK DTR Q +I LD+ +V ISA+ +L VIF Sbjct: 61 RNKPIILVINKWDLIQKDTRTQQEYLRKIKGKFKFLDWAPVVFISAKTGEKIHKLIDVIF 120 Query: 161 KI 162 ++ Sbjct: 121 QV 122 >gi|309775503|ref|ZP_07670503.1| ribosome-associated GTPase EngA [Erysipelotrichaceae bacterium 3_1_53] gi|308916597|gb|EFP62337.1| ribosome-associated GTPase EngA [Erysipelotrichaceae bacterium 3_1_53] Length = 173 Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 62/166 (37%), Positives = 98/166 (59%), Gaps = 2/166 (1%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST+FNR++ ++ ++V + PG+TRDR+YG+A F ++DT GI Sbjct: 6 VAIVGRPNVGKSTIFNRIIGERKSIVEDTPGVTRDRIYGKAEWLTREFRVIDTGGIQLA- 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N ++N Q E+AI+EA I+F++ K G+T D + L + P+I+ NK+D Sbjct: 65 NQDFQTEINMQVEIAIDEADCIVFVVSGKDGLTHDDEYVARLLHRTKKPVILAVNKVDDF 124 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSE-LHSVIFKIFKQKYPN 169 YE YSL + + +S H +G + L ++I + K+K N Sbjct: 125 AQNDAIYEFYSLGLGDPLAVSGAHGIGIGDVLDAIIHALPKKKRTN 170 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/167 (22%), Positives = 75/167 (44%), Gaps = 12/167 (7%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VGRPNVGKST+ NR++G + + G+TRD + W + DT G++ + Sbjct: 6 VAIVGRPNVGKSTIFNRIIGERKSIVEDTPGVTRDRIYGKAEWLTREFRVIDTGGIQLAN 65 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + + + + ++ + + ++ D + + T V+LA+NK D Sbjct: 66 ---QDFQTEINMQVEIAIDEADCIVFVVSGKDGLTHDDEYVARLLHRTKKPVILAVNKVD 122 Query: 326 MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVL 372 + + AI +G +SG G G+ D++ +++ Sbjct: 123 DFA---------QNDAIYEFYSLGLGDPLAVSGAHGIGIGDVLDAII 160 >gi|260200776|ref|ZP_05768267.1| GTP-binding protein EngA [Mycobacterium tuberculosis T46] gi|289443171|ref|ZP_06432915.1| GTP-binding protein EngA [Mycobacterium tuberculosis T46] gi|289416090|gb|EFD13330.1| GTP-binding protein EngA [Mycobacterium tuberculosis T46] Length = 285 Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 77/259 (29%), Positives = 127/259 (49%), Gaps = 28/259 (10%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ A+ G F + DT G + Sbjct: 29 VAVVGRPNVGKSTLVNRILGRREAVVQDIPGVTRDRVCYDALWTGRRFVVQDTGGW-EPN 87 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + + +Q +A+ A ++ ++D+ G T D A L + P+ + +NK+D+ Sbjct: 88 AKGLQRLVAEQASVAMRTADAVILVVDAGVGATAADEAAARILLRSGKPVFLAANKVDSE 147 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + ++SL E ISA H G ++L + + Sbjct: 148 KGESDAAALWSLGLGEPHAISAMHGRGVADLLDGVLAALPEV------------------ 189 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 E+ ++ G P R+A+VG+PNVGKS+L+N+L G R + +G T D V Sbjct: 190 -GESASASG--------GPRRVALVGKPNVGKSSLLNKLAGDQRSVVHEAAGTTVDPVDS 240 Query: 245 SWNWKNHPIEIFDTAGMRK 263 DTAG+R+ Sbjct: 241 LIELGGDVWRFVDTAGLRR 259 Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 51/167 (30%), Positives = 80/167 (47%), Gaps = 12/167 (7%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +AVVGRPNVGKSTL+NR+LG + G+TRD V W + DT G +P+ Sbjct: 29 VAVVGRPNVGKSTLVNRILGRREAVVQDIPGVTRDRVCYDALWTGRRFVVQDTGGW-EPN 87 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + L++ +++ ++RT + I+++DA + D + +G V LA NK D Sbjct: 88 --AKGLQRLVAEQASVAMRTADAVILVVDAGVGATAADEAAARILLRSGKPVFLAANKVD 145 Query: 326 MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVL 372 + + L +G + IS G G+ DL+ VL Sbjct: 146 SEKGESD---------AAALWSLGLGEPHAISAMHGRGVADLLDGVL 183 >gi|145579207|pdb|2DYK|A Chain A, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga From Thermus Thermophilus Hb8 gi|145579208|pdb|2DYK|B Chain B, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga From Thermus Thermophilus Hb8 Length = 161 Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 58/160 (36%), Positives = 96/160 (60%), Gaps = 2/160 (1%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 ++ + IVG PNVGKS+LFNRL+KK+ AVV + PG+TRD G + F +VDT G+ Sbjct: 1 MHKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLW 60 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 G K++ ++ + A+ +A ++LF +D +A +T D+ + +LR+K P+I+V+ K+ Sbjct: 61 SGDKWE--KKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKV 118 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 D + +Y L F + + S+EH G EL I++ Sbjct: 119 DDPKHELYLGPLYGLGFGDPIPTSSEHARGLEELLEAIWE 158 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 4/121 (3%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP 264 ++ +VGRPNVGKS+L NRLL + G+TRD + DT G+ Sbjct: 3 KVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWS- 61 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 + E+K +K +++ E + +D + D + + + G V+L K Sbjct: 62 ---GDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKV 118 Query: 325 D 325 D Sbjct: 119 D 119 >gi|213649667|ref|ZP_03379720.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 136 Score = 113 bits (283), Expect = 6e-23, Method: Composition-based stats. Identities = 54/113 (47%), Positives = 77/113 (68%), Gaps = 1/113 (0%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A + G F +DT GI Sbjct: 1 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGI 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIP 113 DG + +M +Q+ LAI EA ++LF++D++AG+ P D AI LR + P Sbjct: 61 -DGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKP 112 Score = 46.2 bits (108), Expect = 0.011, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 3/90 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VGRPNVGKSTL NRL L G+TRD + DT G+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGI---D 61 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA 295 + +E + ++S+ ++ + + ++DA Sbjct: 62 GTEDGVETRMAEQSLLAIEEADVVLFMVDA 91 >gi|255292518|dbj|BAH89633.1| GTP-binding protein EngA [uncultured bacterium] Length = 192 Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 76/219 (34%), Positives = 109/219 (49%), Gaps = 27/219 (12%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M IA++G PNVGKSTLFNRL + + A+V + PG+TRDRL G + F +VDT G+ Sbjct: 1 MTPVIALLGRPNVGKSTLFNRLTRTRDALVADFPGVTRDRLVGSGQLGDRPFWVVDTGGL 60 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 G++ ++ +++DQ A EA +L ++D++AG T D I LR P+ + NK Sbjct: 61 L-GEDSQLSGKVSDQALAAAQEADAVLLVVDARAGPTADDRTIAETLRTLGRPVRVAVNK 119 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + + E + L E ISA H G +L + F Sbjct: 120 AEHLNPELVRAEFFELGLGEPTPISASHGHGVRDLLDTVLDAFP---------------- 163 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTL 219 P E + E + S+P+ AVVGRPN GKSTL Sbjct: 164 ----PAEPVPEEAED-----SRPV-FAVVGRPNAGKSTL 192 Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 47/168 (27%), Positives = 81/168 (48%), Gaps = 12/168 (7%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++GRPNVGKSTL NRL L G+TRD + S + P + DT G+ Sbjct: 5 IALLGRPNVGKSTLFNRLTRTRDALVADFPGVTRDRLVGSGQLGDRPFWVVDTGGLLGED 64 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L K +++ + + + ++++DA D I +++ G V +A+NK + Sbjct: 65 ---SQLSGKVSDQALAAAQEADAVLLVVDARAGPTADDRTIAETLRTLGRPVRVAVNKAE 121 Query: 326 MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 ++ +L +R + ++G IS G G+ DL+ +VL+ Sbjct: 122 HLNPEL-----VRAEFF----ELGLGEPTPISASHGHGVRDLLDTVLD 160 >gi|289811471|ref|ZP_06542100.1| GTP-binding protein EngA [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 119 Score = 111 bits (277), Expect = 3e-22, Method: Composition-based stats. Identities = 53/108 (49%), Positives = 75/108 (69%), Gaps = 1/108 (0%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A + G F +DT GI Sbjct: 12 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGI 71 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLR 108 DG + +M +Q+ LAI EA ++LF++D++AG+ P D AI LR Sbjct: 72 -DGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLR 118 Score = 46.6 bits (109), Expect = 0.009, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 3/90 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VGRPNVGKSTL NRL L G+TRD + DT G+ Sbjct: 16 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEVEGREFICIDTGGI---D 72 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA 295 + +E + ++S+ ++ + + ++DA Sbjct: 73 GTEDGVETRMAEQSLLAIEEADVVLFMVDA 102 >gi|237800049|ref|ZP_04588510.1| GTP-binding protein Der [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022904|gb|EGI02961.1| GTP-binding protein Der [Pseudomonas syringae pv. oryzae str. 1_6] Length = 248 Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 68/213 (31%), Positives = 107/213 (50%), Gaps = 2/213 (0%) Query: 255 IFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTG 314 + DTAG+RK +I E +E+ +V K++Q+++ I ++DA DL ++ G Sbjct: 5 LIDTAGVRKRGKIHEEVEKFSVVKTLQAIKDANVVIFVMDAREGVVDHDLNLLGFALEAG 64 Query: 315 HAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEI 374 A+V+ALNKWD ++ + + DI+ IS G G+ +L SV Sbjct: 65 RALVIALNKWDGMTPGERDFVKIELERRLFFVDFADIHF--ISAMHGTGVGNLYQSVQNS 122 Query: 375 NKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIP 434 K TR TS L L+ ++ PP + +R +L+Y ++PP +I K+P Sbjct: 123 FKSAVTRWPTSRLTQILEDAVSEHAPPMVGSRRIKLRYAHLGGANPPLIVIHGNQVEKVP 182 Query: 435 ESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 +SY RYL N R L G PIR+ F+ +NPY Sbjct: 183 KSYVRYLENTYRRVLKLVGTPIRIEFKGGENPY 215 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 38/148 (25%), Positives = 74/148 (50%), Gaps = 16/148 (10%) Query: 52 FNIVDTAGIADGKNCSIAKQMND----QTELAINEAHLILFLIDSKAGITPYDHAITSFL 107 + ++DTAG+ K I +++ +T AI +A++++F++D++ G+ +D + F Sbjct: 3 YTLIDTAGVR--KRGKIHEEVEKFSVVKTLQAIKDANVVIFVMDAREGVVDHDLNLLGFA 60 Query: 108 RKKNIPIIIVSNKMDTRI-AQRNFYEI------YSLDFKEIVEISAEHDLGTSELHSVIF 160 + ++I NK D +R+F +I + +DF +I ISA H G L+ + Sbjct: 61 LEAGRALVIALNKWDGMTPGERDFVKIELERRLFFVDFADIHFISAMHGTGVGNLYQSVQ 120 Query: 161 KIFKQ---KYPNHPLEMIENNKRNEESP 185 FK ++P L I + +E +P Sbjct: 121 NSFKSAVTRWPTSRLTQILEDAVSEHAP 148 >gi|266624278|ref|ZP_06117213.1| ribosome-associated GTPase EngA [Clostridium hathewayi DSM 13479] gi|288863874|gb|EFC96172.1| ribosome-associated GTPase EngA [Clostridium hathewayi DSM 13479] Length = 245 Score = 110 bits (274), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 65/236 (27%), Positives = 114/236 (48%) Query: 224 LGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSV 283 +G NR++ +G TRD+V DTAG+R+ S+I E LE+ ++ +++ +V Sbjct: 1 MGENRVIVSDIAGTTRDAVDTEIVHNGTEYVFIDTAGLRRKSKIKEELERYSIIRTVTAV 60 Query: 284 RTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIK 343 + +V++DAT +QD +I G +++A+NKWD + + + K Sbjct: 61 ERADVVVVVIDATEGVTEQDAKIAGIAHERGKGIIVAVNKWDAIEKNDKTIYEYTNKIKD 120 Query: 344 NLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTI 403 L + IS +TG+ + L + + + R+ T LN + + PP+ Sbjct: 121 TLAFMPYAEYVFISAKTGQRTNRLFELIDMVRQNQTLRVATGVLNEIMTEAVALQQPPSD 180 Query: 404 FNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMC 459 + RL YITQ+ PP+F+IF N + SY RY+ N++R F G ++ Sbjct: 181 KGKRLRLYYITQVAVKPPTFVIFVNDKNLMHFSYTRYIENKIREAFGFKGTSLKFI 236 Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust. Identities = 37/146 (25%), Positives = 67/146 (45%), Gaps = 19/146 (13%) Query: 29 VVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNCSIAKQMND----QTELAINEAH 84 +V + G TRD + + + NG + +DTAG+ + I +++ +T A+ A Sbjct: 7 IVSDIAGTTRDAVDTEIVHNGTEYVFIDTAGLR--RKSKIKEELERYSIIRTVTAVERAD 64 Query: 85 LILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQRNFYEIYS--------- 135 +++ +ID+ G+T D I ++ II+ NK D ++N IY Sbjct: 65 VVVVVIDATEGVTEQDAKIAGIAHERGKGIIVAVNKWDA--IEKNDKTIYEYTNKIKDTL 122 Query: 136 --LDFKEIVEISAEHDLGTSELHSVI 159 + + E V ISA+ T+ L +I Sbjct: 123 AFMPYAEYVFISAKTGQRTNRLFELI 148 >gi|68067805|ref|XP_675836.1| GTP-binding protein [Plasmodium berghei strain ANKA] gi|56495245|emb|CAI00551.1| GTP-binding protein, putative [Plasmodium berghei] Length = 642 Score = 109 bits (273), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 64/259 (24%), Positives = 123/259 (47%), Gaps = 7/259 (2%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHP--IEIFDTAGM 261 + I+ +G+PN GKS+++N++L NR + +G T DS+ + KN + DTAG+ Sbjct: 333 INISFIGKPNTGKSSILNKILNCNRFIVSPIAGTTIDSIDVLVKGKNDKRMYRLIDTAGI 392 Query: 262 RK-----PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHA 316 +K P E ++ ++++ + ++++D+ D+ I + + Sbjct: 393 QKRKKNVPFNEKTKFEYLLFNRTEKAIKRSDVCVLVIDSFNGISSHDINIARKILEENKS 452 Query: 317 VVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 ++ NKWD++ +K ++ D + + L I + IS +T + L ++ E K Sbjct: 453 CIICCNKWDLIYNKNDIFNDTKNYVLNLLKPIDFSDVLFISAKTSQRLSNIFQHAEEAYK 512 Query: 377 LWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPES 436 + R+ T+ LN +++ L PP I + + Y Q PP F+ FC + Sbjct: 513 NYTRRLNTNTLNQIIKEALLLRPPVPIKGKTLNIYYAIQAHVKPPGFVFFCNSEKSTYLN 572 Query: 437 YKRYLINRLRINFSLSGIP 455 Y +YL NR+R F++ P Sbjct: 573 YTKYLENRIREAFNIRATP 591 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 47/109 (43%), Positives = 72/109 (66%), Gaps = 8/109 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKK--KMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI-- 60 ++I+G PNVGKST+FNRL +K + ++V + P TRD+ YG++ +G F +VDT G+ Sbjct: 65 VSIIGRPNVGKSTIFNRLTRKFQEGSIVLDKPS-TRDKFYGKSEWDGYRFEVVDTGGLIF 123 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRK 109 D K +K++ DQ LA+ E+ ++LF++D AG+ P D I FLRK Sbjct: 124 EDEK---FSKEIRDQILLALEESSVVLFVVDGIAGVHPIDLEICRFLRK 169 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/186 (26%), Positives = 92/186 (49%), Gaps = 26/186 (13%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGV----IFNIVDTAGI 60 I+ +G PN GKS++ N+++ +V G T D + ++ G ++ ++DTAGI Sbjct: 335 ISFIGKPNTGKSSILNKILNCNRFIVSPIAGTTIDSI--DVLVKGKNDKRMYRLIDTAGI 392 Query: 61 AD-GKNCSIAKQ------MNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIP 113 KN ++ + ++TE AI + + + +IDS GI+ +D I + ++N Sbjct: 393 QKRKKNVPFNEKTKFEYLLFNRTEKAIKRSDVCVLVIDSFNGISSHDINIARKILEENKS 452 Query: 114 IIIVSNKMDTRIAQRNFYE---------IYSLDFKEIVEISAEHDLGTSELHSVIFKIFK 164 II NK D + + + + +DF +++ ISA+ TS+ S IF+ + Sbjct: 453 CIICCNKWDLIYNKNDIFNDTKNYVLNLLKPIDFSDVLFISAK----TSQRLSNIFQHAE 508 Query: 165 QKYPNH 170 + Y N+ Sbjct: 509 EAYKNY 514 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 33/89 (37%), Positives = 45/89 (50%), Gaps = 12/89 (13%) Query: 180 RNEESPKENITSEGKSSVKNISKPLR----IAVVGRPNVGKSTLINRLLGYNRLLTGS-- 233 RN ES KE + GK+ N K +R ++++GRPNVGKST+ NRL + GS Sbjct: 38 RNSESEKEEM---GKNKKYNDLKIIRNLPLVSIIGRPNVGKSTIFNRLT--RKFQEGSIV 92 Query: 234 -QSGITRDSVSISWNWKNHPIEIFDTAGM 261 TRD W + E+ DT G+ Sbjct: 93 LDKPSTRDKFYGKSEWDGYRFEVVDTGGL 121 >gi|226328001|ref|ZP_03803519.1| hypothetical protein PROPEN_01892 [Proteus penneri ATCC 35198] gi|225203705|gb|EEG86059.1| hypothetical protein PROPEN_01892 [Proteus penneri ATCC 35198] Length = 119 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 57/115 (49%), Positives = 75/115 (65%), Gaps = 4/115 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 MI IA+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+A + G F I+DT GI Sbjct: 6 MIPVIALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAELEGEEFIIIDTGGI 65 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFL---RKKNI 112 DG + M Q+ AI EA ++LFL+D++AG+ P D I + RKK I Sbjct: 66 -DGAEEGVETHMASQSLQAIQEADIVLFLVDARAGLMPADQGIANTFVVSRKKRI 119 Score = 53.5 bits (127), Expect = 8e-05, Method: Composition-based stats. Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 3/90 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA+VGRPNVGKSTL NRL L G+TRD + I DT G+ Sbjct: 10 IALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAELEGEEFIIIDTGGIDGAE 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA 295 E +E +S+Q+++ + + L+DA Sbjct: 70 ---EGVETHMASQSLQAIQEADIVLFLVDA 96 >gi|156083246|ref|XP_001609107.1| GTP-binding protein engA [Babesia bovis T2Bo] gi|154796357|gb|EDO05539.1| GTP-binding protein engA, putative [Babesia bovis] Length = 353 Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 83/305 (27%), Positives = 142/305 (46%), Gaps = 40/305 (13%) Query: 38 RDRLYGQAIINGVIFNIVDTAGIADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGIT 97 RDR Y A G F +VDT GI D A+ + Q + ++ EA + + ++D + GIT Sbjct: 19 RDRQYALAEWEGRKFRLVDTGGIGD--ETIYAESIKAQCKDSLKEAQVAIVIVDGQCGIT 76 Query: 98 PYDHAITSFL---RKKN--IPIIIVSNKMDT-RIAQRNFYEIYSLDFKEIVEISAEHDLG 151 D +++F+ +K+N + II+ NK + + + L + +SA H G Sbjct: 77 DADIDVSNFVLNAKKQNAQLRIILCVNKCEAFHFGDVLAEQFWRLGLGKPYPVSAIHGTG 136 Query: 152 TSELHSVIFKIFKQKYPNHPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGR 211 +EL +IE K E S E+ + ++ VGR Sbjct: 137 LAEL------------------LIECVKNFETSTVED------------DHDVIVSFVGR 166 Query: 212 PNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESL 271 PN GKS+L+N L G NR L S G T D+V ++ + K + DTAGMR ++ S Sbjct: 167 PNCGKSSLVNLLSGTNRCLVSSNEGTTLDNVEVTVSEKGRQYLLIDTAGMRIQTQNRRSF 226 Query: 272 EQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKL 331 K + + ++R + ++++DA + DL++ + + A V+ NKWD++ Sbjct: 227 LPK--GRGLNAIRRSDVCVLVIDANWGISRNDLKLAEVIRMENRAAVIVCNKWDLIDKDP 284 Query: 332 NLLQD 336 N+ ++ Sbjct: 285 NVYKN 289 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 14/125 (11%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 ++ VG PN GKS+L N L +V ++ G T D + G + ++DTAG+ Sbjct: 161 VSFVGRPNCGKSSLVNLLSGTNRCLVSSNEGTTLDNVEVTVSEKGRQYLLIDTAGMR--- 217 Query: 65 NCSIAKQMNDQTEL-------AINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIV 117 + N ++ L AI + + + +ID+ GI+ D + +R +N +IV Sbjct: 218 ----IQTQNRRSFLPKGRGLNAIRRSDVCVLVIDANWGISRNDLKLAEVIRMENRAAVIV 273 Query: 118 SNKMD 122 NK D Sbjct: 274 CNKWD 278 >gi|297517162|ref|ZP_06935548.1| GTP-binding protein EngA [Escherichia coli OP50] Length = 194 Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 63/194 (32%), Positives = 104/194 (53%), Gaps = 2/194 (1%) Query: 210 GRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITE 269 GRPNVGKSTL NR+LG R++ G TRDS+ I + DTAG+RK +IT+ Sbjct: 1 GRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKRGKITD 60 Query: 270 SLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSD 329 ++E+ +V K++Q++ ++++DA QDL ++ + N+G ++V+ +NKWD +S Sbjct: 61 AVEKFSVIKTLQAIEDANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWDGLSQ 120 Query: 330 KLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNS 389 ++ + +R L I ++ IS G G+ +L SV E R+ TS L Sbjct: 121 EVK--EQVRETLDFRLGFIDFARVHFISALHGSGVGNLFESVREAYDSSTRRVGTSMLTR 178 Query: 390 WLQKTQLQNPPPTI 403 + + PP + Sbjct: 179 IMTMAVEDHQPPLV 192 Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 51/170 (30%), Positives = 91/170 (53%), Gaps = 13/170 (7%) Query: 9 GAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD-GKNCS 67 G PNVGKSTL NR++ ++ VV + PG TRD +Y +G + ++DTAG+ GK Sbjct: 1 GRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKRGKITD 60 Query: 68 IAKQMND-QTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD---- 122 ++ + +T AI +A++++ +ID++ GI+ D ++ F+ ++IV NK D Sbjct: 61 AVEKFSVIKTLQAIEDANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWDGLSQ 120 Query: 123 ---TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPN 169 ++ + + + +DF + ISA H G L F+ ++ Y + Sbjct: 121 EVKEQVRETLDFRLGFIDFARVHFISALHGSGVGNL----FESVREAYDS 166 >gi|82595366|ref|XP_725819.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL] gi|23480965|gb|EAA17384.1| GTP binding protein-related [Plasmodium yoelii yoelii] Length = 853 Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 63/259 (24%), Positives = 123/259 (47%), Gaps = 7/259 (2%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHP--IEIFDTAGM 261 + I+ +G+PN GKS+++N++L NR + +G T DS+ + KN + DTAG+ Sbjct: 545 INISFIGKPNTGKSSILNKILNCNRFIVSPIAGTTIDSIDVLVKGKNDKRMYRLIDTAGI 604 Query: 262 RK-----PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHA 316 +K P E ++ ++++ + ++++D+ D+ I + + Sbjct: 605 QKRKKNVPFNEKTKFEYLLFNRTEKAIKRSDVCVLVIDSFNGISSHDINIARKILEENKS 664 Query: 317 VVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 ++ NKWD++ +K ++ D + + L I + IS +T + L ++ E K Sbjct: 665 CIICCNKWDLIYNKNDIFNDTKNYVLNLLKPIDFSDVLFISAKTSQRLSNIFQHAEEAYK 724 Query: 377 LWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPES 436 + R+ T+ LN +++ L PP I + + Y Q PP F+ FC + Sbjct: 725 NYTRRLNTNTLNQIIKEALLLRPPVPIKGKTLNIYYAIQAHIKPPGFVFFCNSEKSTYLN 784 Query: 437 YKRYLINRLRINFSLSGIP 455 Y +YL +R+R F++ P Sbjct: 785 YTKYLESRIREAFNIRATP 803 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 65/211 (30%), Positives = 110/211 (52%), Gaps = 35/211 (16%) Query: 5 IAIVGAPNVGKSTLFNRLVKK--KMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAG-IA 61 ++I+G PNVGKST+FNRL +K + ++V + P TRD+ YG++ +G F +VDT G I Sbjct: 270 VSIIGRPNVGKSTIFNRLTRKFQEGSIVLDKPS-TRDKFYGKSEWDGYRFEVVDTGGLIF 328 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRK------------ 109 + +N +K++ DQ LA+ E+ ++LF++D G+ P D I FLRK Sbjct: 329 EDEN--FSKEIRDQILLALEESSVVLFVVDGINGVHPIDLEICRFLRKFIKKKYNKIISK 386 Query: 110 --KNIPIIIVSNKMDTRIAQRNFY---------EIYSLDFKEIV-EISAEHDLGTSELHS 157 KN S + + AQ+ Y + F+ + + S+E D S +++ Sbjct: 387 QSKNGEYDNESKRELLKCAQKKTYCNNIDSNNENVVDNTFQNCLSDSSSETDCSKSSVNT 446 Query: 158 VIFKIFKQKYPNHPLEMIENNKRNEESPKEN 188 + ++Y ++ + NK EE+PK+N Sbjct: 447 ELNISQNEEYISNDI-----NKTEEENPKQN 472 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/186 (26%), Positives = 92/186 (49%), Gaps = 26/186 (13%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGV----IFNIVDTAGI 60 I+ +G PN GKS++ N+++ +V G T D + ++ G ++ ++DTAGI Sbjct: 547 ISFIGKPNTGKSSILNKILNCNRFIVSPIAGTTIDSI--DVLVKGKNDKRMYRLIDTAGI 604 Query: 61 AD-GKNCSIAKQ------MNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIP 113 KN ++ + ++TE AI + + + +IDS GI+ +D I + ++N Sbjct: 605 QKRKKNVPFNEKTKFEYLLFNRTEKAIKRSDVCVLVIDSFNGISSHDINIARKILEENKS 664 Query: 114 IIIVSNKMDTRIAQRNFYE---------IYSLDFKEIVEISAEHDLGTSELHSVIFKIFK 164 II NK D + + + + +DF +++ ISA+ TS+ S IF+ + Sbjct: 665 CIICCNKWDLIYNKNDIFNDTKNYVLNLLKPIDFSDVLFISAK----TSQRLSNIFQHAE 720 Query: 165 QKYPNH 170 + Y N+ Sbjct: 721 EAYKNY 726 Score = 43.9 bits (102), Expect = 0.058, Method: Compositional matrix adjust. Identities = 31/88 (35%), Positives = 44/88 (50%), Gaps = 12/88 (13%) Query: 181 NEESPKENITSEGKSSVKNISKPLR----IAVVGRPNVGKSTLINRLLGYNRLLTGS--- 233 N ES K+ + GK+ N K +R ++++GRPNVGKST+ NRL + GS Sbjct: 244 NSESEKKEM---GKNKKYNDLKIIRNLPLVSIIGRPNVGKSTIFNRLT--RKFQEGSIVL 298 Query: 234 QSGITRDSVSISWNWKNHPIEIFDTAGM 261 TRD W + E+ DT G+ Sbjct: 299 DKPSTRDKFYGKSEWDGYRFEVVDTGGL 326 >gi|218659729|ref|ZP_03515659.1| GTP-binding protein EngA [Rhizobium etli IE4771] Length = 98 Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 45/90 (50%), Positives = 67/90 (74%) Query: 381 RITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRY 440 RI+T+ LN WL+ Q+Q+PPP + R +LKY+TQ+++ PP+F+I CT + +PESY RY Sbjct: 5 RISTARLNRWLETQQIQHPPPAVSGRRIKLKYMTQVKARPPAFMISCTRSDALPESYTRY 64 Query: 441 LINRLRINFSLSGIPIRMCFQSSKNPYIKK 470 LIN LR +F + +PIR+ F+S++NPY K Sbjct: 65 LINGLRADFDMPSVPIRIHFRSAENPYESK 94 >gi|70941965|ref|XP_741206.1| GTP-binding protein [Plasmodium chabaudi chabaudi] gi|56519438|emb|CAH78037.1| GTP-binding protein, putative [Plasmodium chabaudi chabaudi] Length = 380 Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 61/256 (23%), Positives = 121/256 (47%), Gaps = 7/256 (2%) Query: 207 AVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHP--IEIFDTAGMRK- 263 + +G+PN GKS+++N++L NR + +G T DS+ + K+ + DTAG++K Sbjct: 74 SFIGKPNTGKSSILNKILNCNRFIVSPIAGTTIDSIDVLVKGKDDKRMYRLIDTAGIQKR 133 Query: 264 ----PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 P E ++ ++++ + I+++D+ D+ I + + ++ Sbjct: 134 KKNVPFNEKTKFEYLLFNRTEKAIKRSDVCILVIDSFNGISSHDINIARKILEENKSCII 193 Query: 320 ALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWK 379 NKWD++ +K ++ D + + L I + +S +T + L ++ E K + Sbjct: 194 CCNKWDLIYNKNDIFNDTKNYVLNLLKPIDFSDVLFVSAKTSQRLSNIFQHAEEAYKNYT 253 Query: 380 TRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKR 439 R+ T+ LN +++ L PP I + + Y Q PP F+ FC +Y + Sbjct: 254 RRLNTNTLNQIIKEALLLRPPVPIKGKTLNIYYAIQAHIKPPGFVFFCNSEKSAYLNYTK 313 Query: 440 YLINRLRINFSLSGIP 455 YL +R+R F++ P Sbjct: 314 YLESRIREAFNIRATP 329 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 47/185 (25%), Positives = 91/185 (49%), Gaps = 26/185 (14%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGV----IFNIVDTAGIA 61 + +G PN GKS++ N+++ +V G T D + ++ G ++ ++DTAGI Sbjct: 74 SFIGKPNTGKSSILNKILNCNRFIVSPIAGTTIDSI--DVLVKGKDDKRMYRLIDTAGIQ 131 Query: 62 D-GKNCSIAKQ------MNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPI 114 KN ++ + ++TE AI + + + +IDS GI+ +D I + ++N Sbjct: 132 KRKKNVPFNEKTKFEYLLFNRTEKAIKRSDVCILVIDSFNGISSHDINIARKILEENKSC 191 Query: 115 IIVSNKMDTRIAQRNFYE---------IYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQ 165 II NK D + + + + +DF +++ +SA+ TS+ S IF+ ++ Sbjct: 192 IICCNKWDLIYNKNDIFNDTKNYVLNLLKPIDFSDVLFVSAK----TSQRLSNIFQHAEE 247 Query: 166 KYPNH 170 Y N+ Sbjct: 248 AYKNY 252 >gi|94270407|ref|ZP_01291732.1| Probable GTP-binding protein (EngA) [delta proteobacterium MLMS-1] gi|93450813|gb|EAT01852.1| Probable GTP-binding protein (EngA) [delta proteobacterium MLMS-1] Length = 191 Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 51/183 (27%), Positives = 97/183 (53%) Query: 278 KSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDL 337 +++ ++ C+ ++++DA +QD +++ G A ++ LNKWD++ D + L Sbjct: 1 RALAALERCDLALLVIDAAEGITEQDTKVIGYGLERGRACLVLLNKWDLLKDDRRQQKRL 60 Query: 338 RTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQ 397 + + + +G ++ +S +G G+ L+ V ++++ + TTS LN L Sbjct: 61 LAEVERAVHFVGYAPVHKLSALSGSGVGRLLPLVDKVSEQYGREFTTSRLNQILTAAVAD 120 Query: 398 NPPPTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIR 457 +PP R +L Y+TQI + PP+ +IF P + SY+R+LINR R L +P+R Sbjct: 121 HPPALHKGRRIKLYYVTQISTRPPTLIIFSNDPKNVHFSYQRFLINRFRDALGLDQVPVR 180 Query: 458 MCF 460 + F Sbjct: 181 IFF 183 >gi|330813897|ref|YP_004358136.1| GTP-binding protein EngA [Candidatus Pelagibacter sp. IMCC9063] gi|327486992|gb|AEA81397.1| GTP-binding protein EngA [Candidatus Pelagibacter sp. IMCC9063] Length = 267 Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 64/266 (24%), Positives = 130/266 (48%), Gaps = 4/266 (1%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 + I++VG+PNVGKST N++ N + G T+D +S S+ + N + DT G++K Sbjct: 3 INISIVGKPNVGKSTFFNKIFSKNISKVADEPGTTKDVISESFLFGNEELVFHDTGGLKK 62 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 ++ + + K+ + ++ I ++DA F K D +I + N +++ +NK Sbjct: 63 KAKSKDENQSYITKECLTAINNSSIVIFMMDANDKFTKNDKQICRMILNKFKTLIVIINK 122 Query: 324 WDMVSDKLNLLQDLRTKAIKNLPQIGDIYI--NTISGRTGEGLDDLMVSVLEINKLWKTR 381 D++ D++ +NL DI I + S + D + + +++ K Sbjct: 123 ADLIKDEIKTRTKYFNYYFENL--FSDILIKPHFFSSIMEKSPDVFLRKICSLDQSTKIM 180 Query: 382 ITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYL 441 I+ + LN++L+KT + P N ++K++ Q+ + P F T + + YK Y Sbjct: 181 ISNNKLNTFLEKTNNSHRAPQKGNFRPKIKFLKQVNARPIILKAFGTRLKGVNKDYKNYF 240 Query: 442 INRLRINFSLSGIPIRMCFQSSKNPY 467 + +L +F + + + F +++NP+ Sbjct: 241 LKQLLSHFGIYNKVVIIKFVNNENPF 266 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 41/140 (29%), Positives = 65/140 (46%), Gaps = 9/140 (6%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M I+IVG PNVGKST FN++ K ++ V + PG T+D + + DT G+ Sbjct: 1 MTINISIVGKPNVGKSTFFNKIFSKNISKVADEPGTTKDVISESFLFGNEELVFHDTGGL 60 Query: 61 ADGKNCSIAKQ--MNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVS 118 Q + + AIN + +++F++D+ T D I + K +I++ Sbjct: 61 KKKAKSKDENQSYITKECLTAINNSSIVIFMMDANDKFTKNDKQICRMILNKFKTLIVII 120 Query: 119 NKMD-------TRIAQRNFY 131 NK D TR N+Y Sbjct: 121 NKADLIKDEIKTRTKYFNYY 140 >gi|237756890|ref|ZP_04585366.1| GTP-binding protein EngA [Sulfurihydrogenibium yellowstonense SS-5] gi|237690953|gb|EEP60085.1| GTP-binding protein EngA [Sulfurihydrogenibium yellowstonense SS-5] Length = 222 Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 61/212 (28%), Positives = 110/212 (51%), Gaps = 4/212 (1%) Query: 255 IFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTG 314 DTAGMRK S++ LE +V ++++++ + ++++DA +QD +I + Sbjct: 11 FLDTAGMRKKSKVEYGLEFFSVGRTIEAIEKADVVVLVIDANQGATEQDTKIAGLIQRRY 70 Query: 315 HAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEI 374 V+ +NK D + K L+ + + + L I I S +T EGLD+L+ ++ + Sbjct: 71 KPTVIVINKIDTIDKKT--LEKVENQVRERLYFISYAPIVFTSAKTKEGLDELLEKIVYV 128 Query: 375 -NKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKI 433 N+ WK R+ T LN +++ Q PPT + ++ Y TQ++ PP+FL+F Sbjct: 129 YNQAWK-RVGTGQLNRAIKQIQNLRQPPTYQGKPLKIYYATQLEGKPPAFLLFVNKAEGF 187 Query: 434 PESYKRYLINRLRINFSLSGIPIRMCFQSSKN 465 E+Y ++L N LR L PI++ F+ + Sbjct: 188 KENYVKFLENNLRKLLGLENAPIKLIFRGKEE 219 Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust. Identities = 33/129 (25%), Positives = 60/129 (46%), Gaps = 9/129 (6%) Query: 48 NGVIFNIVDTAGIADGKNCSIAKQMND--QTELAINEAHLILFLIDSKAGITPYDHAITS 105 +G F +DTAG+ + +T AI +A +++ +ID+ G T D I Sbjct: 5 DGQKFLFLDTAGMRKKSKVEYGLEFFSVGRTIEAIEKADVVVLVIDANQGATEQDTKIAG 64 Query: 106 FLRKKNIPIIIVSNKMDT-------RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSV 158 ++++ P +IV NK+DT ++ + +Y + + IV SA+ G EL Sbjct: 65 LIQRRYKPTVIVINKIDTIDKKTLEKVENQVRERLYFISYAPIVFTSAKTKEGLDELLEK 124 Query: 159 IFKIFKQKY 167 I ++ Q + Sbjct: 125 IVYVYNQAW 133 >gi|289548080|ref|YP_003473068.1| tRNA modification GTPase TrmE [Thermocrinis albus DSM 14484] gi|289181697|gb|ADC88941.1| tRNA modification GTPase TrmE [Thermocrinis albus DSM 14484] Length = 450 Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 68/212 (32%), Positives = 108/212 (50%), Gaps = 20/212 (9%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + K L +A+VG+PNVGKS+L N LLG R + G TRD + WN PI + DTA Sbjct: 215 LRKGLNLAIVGKPNVGKSSLFNALLGSQRAIVTDIPGTTRDFLQEQWNIGGIPINLVDTA 274 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R T+ +EQ V++S++ + + ++++D + P E++DL I V + H VV Sbjct: 275 GIRTT---TDPVEQMGVQRSIEKLGSAHIVLLVVDGSKPLEEEDLSIYSMVKDKDHIVV- 330 Query: 320 ALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWK 379 LNK D L + +D K P+ +S +TG+GL+DL +L + Sbjct: 331 -LNKKD-----LGVCED----TAKAFPE-----FVMVSAKTGDGLEDLRKEILRRAGFYT 375 Query: 380 TRITTSYLNSWLQKTQLQNPPPTIFNRYNRLK 411 + Y+++ LQN I Y +L+ Sbjct: 376 AEGGSIYVSAR-HANLLQNSLSVIKLVYQQLR 406 Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 56/158 (35%), Positives = 84/158 (53%), Gaps = 10/158 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKS+LFN L+ + A+V + PG TRD L Q I G+ N+VDTAGI Sbjct: 221 LAIVGKPNVGKSSLFNALLGSQRAIVTDIPGTTRDFLQEQWNIGGIPINLVDTAGIR--T 278 Query: 65 NCSIAKQMNDQTELA-INEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 +QM Q + + AH++L ++D + D +I S ++ K+ I+V NK D Sbjct: 279 TTDPVEQMGVQRSIEKLGSAHIVLLVVDGSKPLEEEDLSIYSMVKDKD--HIVVLNKKDL 336 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 + + + F E V +SA+ G +L I + Sbjct: 337 GVCEDT-----AKAFPEFVMVSAKTGDGLEDLRKEILR 369 >gi|207743440|ref|YP_002259832.1| gtp-binding protein enga (partial sequence n terminus) [Ralstonia solanacearum IPO1609] gi|206594837|emb|CAQ61764.1| probable gtp-binding protein enga (partial sequence n terminus) [Ralstonia solanacearum IPO1609] Length = 122 Score = 97.8 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 46/105 (43%), Positives = 65/105 (61%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTLFNRL + + A+V + PG+TRDR YG+ + F +DT G Sbjct: 5 IALVGRPNVGKSTLFNRLTRSRDALVADMPGLTRDRHYGEGRVGERPFIAIDTGGFEPVA 64 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRK 109 I +M QT A+ EA +++F++D + G+ P D I +LRK Sbjct: 65 KEGIVAEMAKQTRQAVVEADVVIFIVDGRLGLAPQDRVIADYLRK 109 Score = 57.8 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 38/112 (33%), Positives = 53/112 (47%), Gaps = 3/112 (2%) Query: 202 KPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGM 261 KP+ IA+VGRPNVGKSTL NRL L G+TRD P DT G Sbjct: 2 KPV-IALVGRPNVGKSTLFNRLTRSRDALVADMPGLTRDRHYGEGRVGERPFIAIDTGGF 60 Query: 262 RKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNT 313 ++ E + + K++ Q+V + I ++D + QD I D + T Sbjct: 61 EPVAK--EGIVAEMAKQTRQAVVEADVVIFIVDGRLGLAPQDRVIADYLRKT 110 >gi|158520121|ref|YP_001527991.1| tRNA modification GTPase TrmE [Desulfococcus oleovorans Hxd3] gi|158508947|gb|ABW65914.1| tRNA modification GTPase TrmE [Desulfococcus oleovorans Hxd3] Length = 462 Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 55/163 (33%), Positives = 87/163 (53%), Gaps = 3/163 (1%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+ I G PN GKSTL NRL+ A+V PG TRD + G+ ++G F DTAG+ Sbjct: 227 TVVIAGPPNAGKSTLLNRLLGTDRALVSEIPGTTRDLVDGRVWVSGTPFVFTDTAGLRPD 286 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 ++ + A+++A LILF++D+ AG+ P A+ F P ++V+NK D Sbjct: 287 SGDAVEAMGMARARTAMDQADLILFVVDAAAGMGPESGAL--FCEASAKPFVVVANKSDL 344 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQK 166 A R F + +V +SA H LG EL +++ ++ ++ Sbjct: 345 PEA-RGFMPPSAWPAAPVVHVSALHGLGIKELKNLLVRMVGEQ 386 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 2/91 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 + + G PN GKSTL+NRLLG +R L G TRD V P DTAG+R S Sbjct: 228 VVIAGPPNAGKSTLLNRLLGTDRALVSEIPGTTRDLVDGRVWVSGTPFVFTDTAGLRPDS 287 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDAT 296 +++E + ++ ++ + + ++DA Sbjct: 288 --GDAVEAMGMARARTAMDQADLILFVVDAA 316 >gi|3978495|gb|AAC83369.1| ULF-250 protein [Rattus norvegicus] Length = 188 Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 50/187 (26%), Positives = 95/187 (50%) Query: 278 KSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDL 337 ++++++ +++LDA +QD R+ G A+++ +NKWD + + ++D Sbjct: 2 RALKAIDDSNVVLMVLDAEAGIREQDKRVAGFAHEAGRAMIIVVNKWDAIEKDDHTVKDF 61 Query: 338 RTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQ 397 + I +S +TG+ LD L + +++ + RI++S LN + Sbjct: 62 ENMIRAEFKFLDYAPIVFVSAKTGQRLDRLPQMIKDVDANHRKRISSSTLNDVIMDAIAV 121 Query: 398 NPPPTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIR 457 NP PT R R+ Y TQ+ PP+F+IF + SY+R+L N++R F +G PI+ Sbjct: 122 NPTPTDNGRRLRVYYATQVAVQPPTFVIFVNDVELMHFSYERFLENKIREAFDFTGTPIK 181 Query: 458 MCFQSSK 464 + ++ K Sbjct: 182 LIVRARK 188 >gi|134301153|ref|YP_001114649.1| tRNA modification GTPase TrmE [Desulfotomaculum reducens MI-1] gi|189036201|sp|A4J9S1|MNME_DESRM RecName: Full=tRNA modification GTPase mnmE gi|134053853|gb|ABO51824.1| tRNA modification GTPase trmE [Desulfotomaculum reducens MI-1] Length = 461 Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 56/155 (36%), Positives = 95/155 (61%), Gaps = 4/155 (2%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PNVGKS+L N L+ ++ A+V + PG TRD + I GV I+DTAG+ + ++ Sbjct: 227 IVGKPNVGKSSLLNALLHEQRAIVTDIPGTTRDVIEEILSIKGVPLKIIDTAGLRETQDL 286 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 + K +++ +N+A ++LF++D+ GI+ D + ++ K + I+I NK+D Sbjct: 287 -VEKIGVEKSRELLNQADIVLFVLDATTGISDEDRKVIDLIKDKKVLILI--NKIDITKN 343 Query: 127 QRNFYEIYSL-DFKEIVEISAEHDLGTSELHSVIF 160 + + +EI L +F EI+EISA+ ++G +L IF Sbjct: 344 KIDSHEIRQLINFSEIIEISAQKEIGLDKLEETIF 378 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 62/221 (28%), Positives = 111/221 (50%), Gaps = 31/221 (14%) Query: 181 NEESPKEN---ITSEGKSSVKNIS-------------KPLRIAVVGRPNVGKSTLINRLL 224 ++ P+EN I+ E S +K I + L+ +VG+PNVGKS+L+N LL Sbjct: 184 EDDIPEENLLGISKECNSLIKEIEHLLAYADTGKIYREGLKTVIVGKPNVGKSSLLNALL 243 Query: 225 GYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVR 284 R + G TRD + + K P++I DTAG+R+ + E + V+KS + + Sbjct: 244 HEQRAIVTDIPGTTRDVIEEILSIKGVPLKIIDTAGLRETQDLVEKI---GVEKSRELLN 300 Query: 285 TCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKN 344 + + +LDAT +D +++D + + V++ +NK D+ +K++ + I+ Sbjct: 301 QADIVLFVLDATTGISDEDRKVIDLIKD--KKVLILINKIDITKNKID------SHEIRQ 352 Query: 345 LPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTS 385 L +I IS + GLD L ++ N + + +ITT+ Sbjct: 353 LINFSEII--EISAQKEIGLDKLEETIF--NMVVEGKITTT 389 >gi|167951370|ref|ZP_02538444.1| Small GTP-binding protein domain [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 188 Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 59/159 (37%), Positives = 88/159 (55%), Gaps = 9/159 (5%) Query: 8 VGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNCS 67 +G PNVGKSTLFNRL + + A+V + PG+TRDR YG + + +VDT G++ G++ Sbjct: 1 MGRPNVGKSTLFNRLTRSRDALVADQPGLTRDRKYGMGRLGPGPYVVVDTGGLS-GED-G 58 Query: 68 IAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD--TRI 125 + M Q AI EA +L L+D++ G T D I LR+ + V NK + +R Sbjct: 59 VDLLMEQQVRQAIGEADHVLLLLDAREGCTGGDAIIAEQLRRTGKLVTAVVNKSEGLSRD 118 Query: 126 AQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFK 164 A N E +SL E I+A H G +H +I ++ + Sbjct: 119 AAAN--EFFSLGLGEPKAIAAAHGQG---VHGLIVEVLE 152 Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 71/165 (43%), Gaps = 13/165 (7%) Query: 209 VGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRIT 268 +GRPNVGKSTL NRL L Q G+TRD P + DT G+ + Sbjct: 1 MGRPNVGKSTLFNRLTRSRDALVADQPGLTRDRKYGMGRLGPGPYVVVDTGGLSGEDGVD 60 Query: 269 ESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVS 328 +EQ+ Q++ + ++LLDA D I + + TG V +NK + +S Sbjct: 61 LLMEQQV----RQAIGEADHVLLLLDAREGCTGGDAIIAEQLRRTGKLVTAVVNKSEGLS 116 Query: 329 DKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 R A +G I+ G+G+ L+V VLE Sbjct: 117 ---------RDAAANEFFSLGLGEPKAIAAAHGQGVHGLIVEVLE 152 >gi|281412323|ref|YP_003346402.1| tRNA modification GTPase TrmE [Thermotoga naphthophila RKU-10] gi|281373426|gb|ADA66988.1| tRNA modification GTPase TrmE [Thermotoga naphthophila RKU-10] Length = 450 Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 74/232 (31%), Positives = 126/232 (54%), Gaps = 16/232 (6%) Query: 183 ESPKENITSEGKSSVKNI--SKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 E KE +T E + + I ++ LR+ +VG+PNVGKSTL+NRLL +R + G TRD Sbjct: 189 EQIKEELTEELRKADAGILLNRGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRD 248 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 +S K I DTAG+R S + +E+ +++++Q V + + +LDA+ P + Sbjct: 249 VISEEIVIKGILFRIVDTAGVR--SETNDLVERLGIERTLQEVEKADIVLFVLDASSPLD 306 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIG-DIYINTISGR 359 ++D +I++ + N + VV +NK D+V +K+N + IKN ++G D ++ IS Sbjct: 307 EEDRKILERIKNKRYLVV--INKVDVV-EKIN------EEEIKN--KLGTDRHMVKISAL 355 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLK 411 GEGL+ L ++ + R + S + + QK L+N + + LK Sbjct: 356 KGEGLEKLEEAIYRETQEIFERGSDSLITNLRQKQLLENVKAHLEDAIRSLK 407 Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 58/202 (28%), Positives = 110/202 (54%), Gaps = 7/202 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + IVG PNVGKSTL NRL+ + A+V + PG TRD + + +I G++F IVDTAG+ Sbjct: 214 MVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIKGILFRIVDTAGVRSET 273 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 N + + ++T + +A ++LF++D+ + + D I R KN ++V NK+D Sbjct: 274 NDLVERLGIERTLQEVEKADIVLFVLDASSPLDEEDRKILE--RIKNKRYLVVINKVDVV 331 Query: 124 -RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 +I + D + +V+ISA G +L I++ ++ + +I N ++ + Sbjct: 332 EKINEEEIKNKLGTD-RHMVKISALKGEGLEKLEEAIYRETQEIFERGSDSLITNLRQKQ 390 Query: 183 ESPKENITSEGKSSVKNISKPL 204 EN+ + + +++++ + + Sbjct: 391 --LLENVKAHLEDAIRSLKEGM 410 >gi|170288479|ref|YP_001738717.1| tRNA modification GTPase TrmE [Thermotoga sp. RQ2] gi|205829186|sp|B1L9N6|MNME_THESQ RecName: Full=tRNA modification GTPase mnmE gi|170175982|gb|ACB09034.1| tRNA modification GTPase TrmE [Thermotoga sp. RQ2] Length = 450 Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 72/219 (32%), Positives = 122/219 (55%), Gaps = 16/219 (7%) Query: 183 ESPKENITSEGKSSVKNI--SKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 E KE +T E K + I ++ LR+ +VG+PNVGKSTL+NRLL +R + G TRD Sbjct: 189 ERIKEKLTEELKKADAGILLNRGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRD 248 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 +S + I DTAG+R S + +E+ +++++Q + + + +LDA+ P + Sbjct: 249 VISEEIVIRGILFRIVDTAGVR--SETNDLVERLGIERTLQEIEKADIVLFVLDASSPLD 306 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIG-DIYINTISGR 359 ++D +I++ + N + VV +NK D+V +K+N + IKN ++G D ++ IS Sbjct: 307 EEDRKILERIKNKRYLVV--INKVDVV-EKIN------EEEIKN--KLGTDRHMVKISAL 355 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQN 398 GEGL+ L S+ + R + S + + QK L+N Sbjct: 356 KGEGLEKLEESIYRETQEIFERGSDSLITNLRQKQLLEN 394 Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 57/175 (32%), Positives = 95/175 (54%), Gaps = 5/175 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + IVG PNVGKSTL NRL+ + A+V + PG TRD + + +I G++F IVDTAG+ Sbjct: 214 MVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSET 273 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 N + + ++T I +A ++LF++D+ + + D I R KN ++V NK+D Sbjct: 274 NDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILE--RIKNKRYLVVINKVDVV 331 Query: 124 -RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 +I + D + +V+ISA G +L I++ ++ + +I N Sbjct: 332 EKINEEEIKNKLGTD-RHMVKISALKGEGLEKLEESIYRETQEIFERGSDSLITN 385 >gi|15643037|ref|NP_228080.1| tRNA modification GTPase TrmE [Thermotoga maritima MSB8] gi|14195303|sp|Q9WYA4|MNME_THEMA RecName: Full=tRNA modification GTPase mnmE gi|4980765|gb|AAD35356.1|AE001709_2 thiophene oxidation protein ThdF-related GTPase [Thermotoga maritima MSB8] Length = 450 Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 72/219 (32%), Positives = 122/219 (55%), Gaps = 16/219 (7%) Query: 183 ESPKENITSEGKSSVKNI--SKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 E KE +T E K + I ++ LR+ +VG+PNVGKSTL+NRLL +R + G TRD Sbjct: 189 ERIKEKLTEELKKADAGILLNRGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRD 248 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 +S + I DTAG+R S + +E+ +++++Q + + + +LDA+ P + Sbjct: 249 VISEEIVIRGILFRIVDTAGVR--SETNDLVERLGIERTLQEIEKADIVLFVLDASSPLD 306 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIG-DIYINTISGR 359 ++D +I++ + N + VV +NK D+V +K+N + IKN ++G D ++ IS Sbjct: 307 EEDRKILERIKNKRYLVV--INKVDVV-EKIN------EEEIKN--KLGTDRHMVKISAL 355 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQN 398 GEGL+ L S+ + R + S + + QK L+N Sbjct: 356 KGEGLEKLEESIYRETQEIFERGSDSLITNLRQKQLLEN 394 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 60/202 (29%), Positives = 109/202 (53%), Gaps = 7/202 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + IVG PNVGKSTL NRL+ + A+V + PG TRD + + +I G++F IVDTAG+ Sbjct: 214 MVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSET 273 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 N + + ++T I +A ++LF++D+ + + D I R KN ++V NK+D Sbjct: 274 NDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILE--RIKNKRYLVVINKVDVV 331 Query: 124 -RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 +I + D + +V+ISA G +L I++ ++ + +I N ++ + Sbjct: 332 EKINEEEIKNKLGTD-RHMVKISALKGEGLEKLEESIYRETQEIFERGSDSLITNLRQKQ 390 Query: 183 ESPKENITSEGKSSVKNISKPL 204 EN+ + ++K++ + + Sbjct: 391 --LLENVKGHLEDAIKSLKEGM 410 >gi|61679425|pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga Maritima gi|61679427|pdb|1XZQ|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga Maritima Complexed With 5-Formyl-Thf Length = 482 Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 72/219 (32%), Positives = 122/219 (55%), Gaps = 16/219 (7%) Query: 183 ESPKENITSEGKSSVKNI--SKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 E KE +T E K + I ++ LR+ +VG+PNVGKSTL+NRLL +R + G TRD Sbjct: 221 ERIKEKLTEELKKADAGILLNRGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRD 280 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 +S + I DTAG+R S + +E+ +++++Q + + + +LDA+ P + Sbjct: 281 VISEEIVIRGILFRIVDTAGVR--SETNDLVERLGIERTLQEIEKADIVLFVLDASSPLD 338 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIG-DIYINTISGR 359 ++D +I++ + N + VV +NK D+V +K+N + IKN ++G D ++ IS Sbjct: 339 EEDRKILERIKNKRYLVV--INKVDVV-EKIN------EEEIKN--KLGTDRHMVKISAL 387 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQN 398 GEGL+ L S+ + R + S + + QK L+N Sbjct: 388 KGEGLEKLEESIYRETQEIFERGSDSLITNLRQKQLLEN 426 Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 60/202 (29%), Positives = 109/202 (53%), Gaps = 7/202 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + IVG PNVGKSTL NRL+ + A+V + PG TRD + + +I G++F IVDTAG+ Sbjct: 246 MVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSET 305 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 N + + ++T I +A ++LF++D+ + + D I R KN ++V NK+D Sbjct: 306 NDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILE--RIKNKRYLVVINKVDVV 363 Query: 124 -RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 +I + D + +V+ISA G +L I++ ++ + +I N ++ + Sbjct: 364 EKINEEEIKNKLGTD-RHMVKISALKGEGLEKLEESIYRETQEIFERGSDSLITNLRQKQ 422 Query: 183 ESPKENITSEGKSSVKNISKPL 204 EN+ + ++K++ + + Sbjct: 423 --LLENVKGHLEDAIKSLKEGM 442 >gi|255660441|ref|ZP_05405850.1| tRNA modification GTPase TrmE [Mycoplasma genitalium G37] Length = 388 Score = 93.2 bits (230), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 64/192 (33%), Positives = 96/192 (50%), Gaps = 9/192 (4%) Query: 167 YPNHPLEMIE----NNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINR 222 YP + E +E NNK K E +K + P +IA++G NVGKS+L+N Sbjct: 123 YPEYLDEQVELSTLNNKVKLIIEKLKRIIENSKQLKKLHDPFKIAIIGETNVGKSSLLNA 182 Query: 223 LLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQS 282 LL ++ + + G TRD V +N + I+I DTAG+RK LE+ +KKS +S Sbjct: 183 LLNQDKAIVSNIKGSTRDVVEGDFNLNGYLIKILDTAGIRKHKS---GLEKAGIKKSFES 239 Query: 283 VRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAI 342 ++ I LLDAT P K+DL ++ + NK D++++K + K I Sbjct: 240 IKQANLVIYLLDATHP--KKDLELISFFKKNKKDFFVFYNKKDLITNKFENSISAKQKDI 297 Query: 343 KNLPQIGDIYIN 354 K L + YIN Sbjct: 298 KELVDLLTKYIN 309 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 35/90 (38%), Positives = 57/90 (63%), Gaps = 1/90 (1%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + IAI+G NVGKS+L N L+ + A+V N G TRD + G +NG + I+DTAGI Sbjct: 164 FKIAIIGETNVGKSSLLNALLNQDKAIVSNIKGSTRDVVEGDFNLNGYLIKILDTAGIRK 223 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDS 92 K+ + K ++ +I +A+L+++L+D+ Sbjct: 224 HKS-GLEKAGIKKSFESIKQANLVIYLLDA 252 >gi|12044858|ref|NP_072668.1| tRNA modification GTPase TrmE [Mycoplasma genitalium G37] gi|1351237|sp|P47254|MNME_MYCGE RecName: Full=tRNA modification GTPase mnmE gi|1045676|gb|AAC71224.1| tRNA modification GTPase TrmE [Mycoplasma genitalium G37] gi|166078782|gb|ABY79400.1| tRNA modification GTPase TrmE [synthetic Mycoplasma genitalium JCVI-1.0] Length = 442 Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 64/192 (33%), Positives = 96/192 (50%), Gaps = 9/192 (4%) Query: 167 YPNHPLEMIE----NNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINR 222 YP + E +E NNK K E +K + P +IA++G NVGKS+L+N Sbjct: 177 YPEYLDEQVELSTLNNKVKLIIEKLKRIIENSKQLKKLHDPFKIAIIGETNVGKSSLLNA 236 Query: 223 LLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQS 282 LL ++ + + G TRD V +N + I+I DTAG+RK LE+ +KKS +S Sbjct: 237 LLNQDKAIVSNIKGSTRDVVEGDFNLNGYLIKILDTAGIRKHK---SGLEKAGIKKSFES 293 Query: 283 VRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAI 342 ++ I LLDAT P K+DL ++ + NK D++++K + K I Sbjct: 294 IKQANLVIYLLDATHP--KKDLELISFFKKNKKDFFVFYNKKDLITNKFENSISAKQKDI 351 Query: 343 KNLPQIGDIYIN 354 K L + YIN Sbjct: 352 KELVDLLTKYIN 363 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 35/90 (38%), Positives = 57/90 (63%), Gaps = 1/90 (1%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + IAI+G NVGKS+L N L+ + A+V N G TRD + G +NG + I+DTAGI Sbjct: 218 FKIAIIGETNVGKSSLLNALLNQDKAIVSNIKGSTRDVVEGDFNLNGYLIKILDTAGIRK 277 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDS 92 K+ + K ++ +I +A+L+++L+D+ Sbjct: 278 HKS-GLEKAGIKKSFESIKQANLVIYLLDA 306 >gi|225848361|ref|YP_002728524.1| tRNA modification GTPase TrmE [Sulfurihydrogenibium azorense Az-Fu1] gi|225644654|gb|ACN99704.1| tRNA modification GTPase TrmE [Sulfurihydrogenibium azorense Az-Fu1] Length = 447 Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 61/208 (29%), Positives = 116/208 (55%), Gaps = 20/208 (9%) Query: 174 MIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGS 233 ++EN + ++S + + S K S+ I + +++A+VGRPNVGKS+L N ++GY R + S Sbjct: 188 IVENLLKVKKSIDKLVGSYKKGSL--IKEGIKLAIVGRPNVGKSSLFNAMVGYERSIVSS 245 Query: 234 QSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLL 293 G TRD + + K+ PI + DTAG+R+ + E L +++S Q + + + ++ Sbjct: 246 YQGTTRDFIEETLKIKDIPIILLDTAGIRETAEYVEKL---GIERSKQKIEEADIILFVI 302 Query: 294 DATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYI 353 D + F +D +I D + N H +V +NK D+++ L++ + ++ I IY Sbjct: 303 DGSQGFTDEDKKIYDEIKNKIHIIV--INKADLITKPLDIFE--KSDNI--------IYT 350 Query: 354 NTISGRTGEGLDDLMVSVLEINKLWKTR 381 +++ T +G+ DL ++EI + +T Sbjct: 351 SSV---TFQGIKDLEEKIIEILGITETE 375 Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 45/118 (38%), Positives = 69/118 (58%), Gaps = 3/118 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKS+LFN +V + ++V ++ G TRD + I + ++DTAGI + Sbjct: 218 LAIVGRPNVGKSSLFNAMVGYERSIVSSYQGTTRDFIEETLKIKDIPIILLDTAGIRETA 277 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + K ++++ I EA +ILF+ID G T D I ++ K I II++ NK D Sbjct: 278 EY-VEKLGIERSKQKIEEADIILFVIDGSQGFTDEDKKIYDEIKNK-IHIIVI-NKAD 332 >gi|222099393|ref|YP_002533961.1| tRNA modification GTPase trmE [Thermotoga neapolitana DSM 4359] gi|221571783|gb|ACM22595.1| tRNA modification GTPase trmE [Thermotoga neapolitana DSM 4359] Length = 455 Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 76/254 (29%), Positives = 129/254 (50%), Gaps = 18/254 (7%) Query: 167 YPNHPLEMIENNKRNEESPKENITSEGKSSVKNI--SKPLRIAVVGRPNVGKSTLINRLL 224 YP+ +E+ K ES E + E K + I ++ LR+ +VG+PNVGKSTL+NRLL Sbjct: 178 YPDDVETDVESVKTKIESIHERLKEELKKADAGIMLNRGLRMVIVGKPNVGKSTLLNRLL 237 Query: 225 GYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVR 284 +R + G TRD +S K + DTAG+R +R + +E+ ++++ Q + Sbjct: 238 KEDRAIVTDIPGTTRDVISEEIVIKGILFRVVDTAGVRSETR--DLVERLGIERTFQEIE 295 Query: 285 TCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVS--DKLNLLQDLRTKAI 342 + + +LDA+ P + +D I++ + + + VV +NK D+V D+ L + L T Sbjct: 296 KADIVLFVLDASSPLDDEDRLILERIKHKRYLVV--INKVDIVERIDEEELKRKLGT--- 350 Query: 343 KNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPT 402 D +I IS GEGL+ L +V + + ++S + + QK L+N + Sbjct: 351 -------DRHIVKISALKGEGLEKLEEAVYRETQEIFEKGSSSLITNLRQKQLLENVKKS 403 Query: 403 IFNRYNRLKYITQI 416 + + LK T I Sbjct: 404 LESAIESLKNKTPI 417 Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 61/196 (31%), Positives = 107/196 (54%), Gaps = 14/196 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + IVG PNVGKSTL NRL+K+ A+V + PG TRD + + +I G++F +VDTAG+ Sbjct: 219 MVIVGKPNVGKSTLLNRLLKEDRAIVTDIPGTTRDVISEEIVIKGILFRVVDTAGVRSET 278 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD-- 122 + + ++T I +A ++LF++D+ + + D I ++ K ++I NK+D Sbjct: 279 RDLVERLGIERTFQEIEKADIVLFVLDASSPLDDEDRLILERIKHKRYLVVI--NKVDIV 336 Query: 123 TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK----IFKQKYPN-----HPLE 173 RI + D + IV+ISA G +L +++ IF++ + + Sbjct: 337 ERIDEEELKRKLGTD-RHIVKISALKGEGLEKLEEAVYRETQEIFEKGSSSLITNLRQKQ 395 Query: 174 MIENNKRNEESPKENI 189 ++EN K++ ES E++ Sbjct: 396 LLENVKKSLESAIESL 411 >gi|297621993|ref|YP_003710130.1| tRNA modification GTPase TrmE [Waddlia chondrophila WSU 86-1044] gi|297377294|gb|ADI39124.1| tRNA modification GTPase TrmE [Waddlia chondrophila WSU 86-1044] Length = 452 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 62/188 (32%), Positives = 103/188 (54%), Gaps = 8/188 (4%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 ++ ++G PNVGKS+L N L+ K+ A+V + PG TRD + ING+ F ++DTAGI +G Sbjct: 221 SLCLIGRPNVGKSSLMNALLDKERAIVTDTPGTTRDIVEDSLRINGLNFRLIDTAGIREG 280 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 +I ++ +++ A+ +A L+L ++D+K G+T D + + K I V NK+D Sbjct: 281 AE-TIEQEGIRRSKEALEKADLVLLVLDAKRGVTAEDEQLIDLVPKGK--TIAVWNKIDL 337 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 E L IV ISA+ G +LH I ++ + P E++ N R++E Sbjct: 338 -----PHDEAPQLGIPYIVPISAKEKKGLKQLHEQIDRVVWEHGPPSKEEILITNVRHKE 392 Query: 184 SPKENITS 191 S + I + Sbjct: 393 SLSDAIAA 400 Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 48/164 (29%), Positives = 82/164 (50%), Gaps = 19/164 (11%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 + + ++GRPNVGKS+L+N LL R + G TRD V S + DTAG+R+ Sbjct: 220 ISLCLIGRPNVGKSSLMNALLDKERAIVTDTPGTTRDIVEDSLRINGLNFRLIDTAGIRE 279 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 + E++EQ+ +++S +++ + +++LDA +D +++D V + NK Sbjct: 280 GA---ETIEQEGIRRSKEALEKADLVLLVLDAKRGVTAEDEQLIDLVPKG--KTIAVWNK 334 Query: 324 WDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDL 367 D+ D+ PQ+G YI IS + +GL L Sbjct: 335 IDLPHDE--------------APQLGIPYIVPISAKEKKGLKQL 364 >gi|319957038|ref|YP_004168301.1| tRNA modification GTPase trme [Nitratifractor salsuginis DSM 16511] gi|319419442|gb|ADV46552.1| tRNA modification GTPase trmE [Nitratifractor salsuginis DSM 16511] Length = 446 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 45/130 (34%), Positives = 80/130 (61%), Gaps = 4/130 (3%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 + + + R+A+VG+PNVGKS+L+N +L Y R + +G TRD++ +H + I D Sbjct: 209 RGLIEGFRVAIVGKPNVGKSSLLNAMLSYERAIVSDVAGTTRDTIEEQIRIGSHIVRIID 268 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFN-TGHA 316 TAG+R+ + +E+ V++S+ S+ E I L DA+ P+E++D RI++ + Sbjct: 269 TAGIRQTE---DRVERIGVERSLASLEEAEVVIALFDASRPWEREDERILERIEALRDKE 325 Query: 317 VVLALNKWDM 326 +++ALNK D+ Sbjct: 326 LIVALNKTDL 335 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 65/132 (49%), Gaps = 24/132 (18%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + +AIVG PNVGKS+L N ++ + A+V + G TRD + Q I I I+DTAGI Sbjct: 215 FRVAIVGKPNVGKSSLLNAMLSYERAIVSDVAGTTRDTIEEQIRIGSHIVRIIDTAGI-- 272 Query: 63 GKNCSIAKQMNDQTE--------LAINEAHLILFLIDSKAGITPYDHAITSFLRK----K 110 +Q D+ E ++ EA +++ L D+ P++ L + + Sbjct: 273 -------RQTEDRVERIGVERSLASLEEAEVVIALFDAS---RPWEREDERILERIEALR 322 Query: 111 NIPIIIVSNKMD 122 + +I+ NK D Sbjct: 323 DKELIVALNKTD 334 >gi|222823559|ref|YP_002575133.1| tRNA modification GTPase, TrmE [Campylobacter lari RM2100] gi|222538781|gb|ACM63882.1| tRNA modification GTPase, TrmE [Campylobacter lari RM2100] Length = 442 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 53/172 (30%), Positives = 95/172 (55%), Gaps = 16/172 (9%) Query: 196 SVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEI 255 S K + + ++A++G+PN GKS+L+N LL ++R + +G TRD + S +H I+I Sbjct: 207 SKKGLIEGFKVAIIGKPNAGKSSLLNSLLAFDRAIVSDIAGTTRDRIEESLKIGSHLIKI 266 Query: 256 FDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGH 315 DTAG+R + +E+ V S +S++ + IV+ D + FE++D RI+ ++ + Sbjct: 267 IDTAGIRNAD---DEIEKIGVHLSYESIKEADIIIVVFDGSKEFEEEDERILQALKDCDK 323 Query: 316 AVVLALNKWDMV--------SDKLNLLQDLRTKAIK-NLPQIGDIYINTISG 358 ++ LNK D+ + + + T+AIK NL + Y+NT+ G Sbjct: 324 KIIYVLNKSDLTTKFEHEISTSCIRICAQENTQAIKENLNE----YLNTLDG 371 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/122 (34%), Positives = 62/122 (50%), Gaps = 5/122 (4%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI-- 60 + +AI+G PN GKS+L N L+ A+V + G TRDR+ I + I+DTAGI Sbjct: 215 FKVAIIGKPNAGKSSLLNSLLAFDRAIVSDIAGTTRDRIEESLKIGSHLIKIIDTAGIRN 274 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 AD + I ++ ++ I EA +I+ + D D I L+ + II V NK Sbjct: 275 ADDEIEKIGVHLSYES---IKEADIIIVVFDGSKEFEEEDERILQALKDCDKKIIYVLNK 331 Query: 121 MD 122 D Sbjct: 332 SD 333 >gi|172039509|ref|YP_001806010.1| tRNA modification GTPase TrmE [Cyanothece sp. ATCC 51142] gi|171700963|gb|ACB53944.1| tRNA modification GTPase [Cyanothece sp. ATCC 51142] Length = 460 Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 64/186 (34%), Positives = 99/186 (53%), Gaps = 23/186 (12%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKS+L N + A+V + PG TRD + Q ++ G+ ++DTAGI Sbjct: 228 VAIVGRPNVGKSSLLNAWSRSDRAIVTDLPGTTRDVVESQLVVGGIPIQVLDTAGI---- 283 Query: 65 NCSIAKQMNDQTE--------LAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIII 116 +Q DQ E LA ++A L+L ID+ G T D I +R ++P+I+ Sbjct: 284 -----RQTTDQVEKIGVERSRLAASQADLVLLTIDATVGWTSQDSEIYQPIR--HLPVIL 336 Query: 117 VSNKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK-IFKQKYPNHPLEMI 175 V NK+D +A N + + + EIV+ SA + G L + I K I +QK + L+ Sbjct: 337 VINKID--LATPNLSQ-FPPEITEIVKTSAANHQGIEALEAAILKAINQQKLTANNLDFA 393 Query: 176 ENNKRN 181 N +++ Sbjct: 394 INQRQS 399 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 42/129 (32%), Positives = 72/129 (55%), Gaps = 5/129 (3%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 L++A+VGRPNVGKS+L+N +R + G TRD V PI++ DTAG+R+ Sbjct: 226 LKVAIVGRPNVGKSSLLNAWSRSDRAIVTDLPGTTRDVVESQLVVGGIPIQVLDTAGIRQ 285 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 T+ +E+ V++S + + ++ +DAT+ + QD I + + V+L +NK Sbjct: 286 ---TTDQVEKIGVERSRLAASQADLVLLTIDATVGWTSQDSEIYQPIRHL--PVILVINK 340 Query: 324 WDMVSDKLN 332 D+ + L+ Sbjct: 341 IDLATPNLS 349 >gi|325294918|ref|YP_004281432.1| tRNA modification GTPase mnmE [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065366|gb|ADY73373.1| tRNA modification GTPase mnmE [Desulfurobacterium thermolithotrophum DSM 11699] Length = 463 Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 56/156 (35%), Positives = 92/156 (58%), Gaps = 7/156 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKS+L N ++K++ A+V PG TRD + + G+ ++DTAGI + Sbjct: 227 VAIVGRPNVGKSSLLNAILKEERAIVTEIPGTTRDIIEETVTLKGIPLRLIDTAGIREAI 286 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK-MDT 123 + + + ++T ++ EA +ILF+ID G T D I+ L+KK I++++ K + Sbjct: 287 D-KVEQIGIERTMKSLEEADVILFVIDGSIGFTEEDRKISKVLKKKENVILVINKKDLGL 345 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVI 159 +++ R S+D+KE VE+SA+ G EL I Sbjct: 346 KLSCRE-----SIDWKECVELSAKSTEGIDELGEKI 376 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 54/203 (26%), Positives = 106/203 (52%), Gaps = 19/203 (9%) Query: 167 YPNHPLEMIENNKRNEE-----SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLIN 221 +P+ +E+ E E+ E + S K K + + +++A+VGRPNVGKS+L+N Sbjct: 184 FPDEEIEIFETGHIREKILEIVEKIEKLVSTYKDG-KVLKEGIKVAIVGRPNVGKSSLLN 242 Query: 222 RLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQ 281 +L R + G TRD + + K P+ + DTAG+R+ + +EQ ++++M+ Sbjct: 243 AILKEERAIVTEIPGTTRDIIEETVTLKGIPLRLIDTAGIREA---IDKVEQIGIERTMK 299 Query: 282 SVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQ------ 335 S+ + + ++D +I F ++D R + V V+L +NK D+ KL+ + Sbjct: 300 SLEEADVILFVIDGSIGFTEED-RKISKVLKKKENVILVINKKDL-GLKLSCRESIDWKE 357 Query: 336 --DLRTKAIKNLPQIGDIYINTI 356 +L K+ + + ++G+ +N + Sbjct: 358 CVELSAKSTEGIDELGEKIVNLV 380 >gi|315637643|ref|ZP_07892849.1| tRNA modification GTPase TrmE [Arcobacter butzleri JV22] gi|315478097|gb|EFU68824.1| tRNA modification GTPase TrmE [Arcobacter butzleri JV22] Length = 446 Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 64/197 (32%), Positives = 109/197 (55%), Gaps = 14/197 (7%) Query: 164 KQKYPNHPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRL 223 ++ P E IEN K + S K + T E + + + ++A++G+PNVGKS+L+N+L Sbjct: 178 EEDLPTDIYEQIEN-KMQKISLKLSNTLEASRRREGMIEGFKVAIIGKPNVGKSSLLNKL 236 Query: 224 LGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSV 283 L ++R + +G TRD++ S H I+I DTAG+R S + E + ++KS+Q++ Sbjct: 237 LNFDRAIISDIAGTTRDTIEESVRIGTHIIKIVDTAGIRDASDVIEKI---GIEKSIQAI 293 Query: 284 RTCETTIVLLDATIPFEKQDLRIVDSV-FNTGHAVVLALNKWDMVS--DK--LNLLQDLR 338 + I L D + + +D +I+D + N+ V++ LNK D+ + DK L+ +L Sbjct: 294 NEADIVIALFDNSKICDDEDKKILDLIKENSDKEVIVVLNKSDLQNQFDKNVLDSFIELS 353 Query: 339 TKA-----IKNLPQIGD 350 TK IK L +I D Sbjct: 354 TKEDINPLIKELEEILD 370 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 49/149 (32%), Positives = 80/149 (53%), Gaps = 8/149 (5%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + +AI+G PNVGKS+L N+L+ A++ + G TRD + I I IVDTAGI D Sbjct: 217 FKVAIIGKPNVGKSSLLNKLLNFDRAIISDIAGTTRDTIEESVRIGTHIIKIVDTAGIRD 276 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRK-KNIPIIIVSNKM 121 + I K +++ AINEA +++ L D+ D I +++ + +I+V NK Sbjct: 277 ASDV-IEKIGIEKSIQAINEADIVIALFDNSKICDDEDKKILDLIKENSDKEVIVVLNKS 335 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDL 150 D +N ++ LD +E+S + D+ Sbjct: 336 DL----QNQFDKNVLD--SFIELSTKEDI 358 >gi|46445656|ref|YP_007021.1| tRNA modification GTPase TrmE [Candidatus Protochlamydia amoebophila UWE25] gi|81829092|sp|Q6MFA3|MNME_PARUW RecName: Full=tRNA modification GTPase mnmE gi|46399297|emb|CAF22746.1| probable GTP-binding protein in thiophene and furan oxidation [Candidatus Protochlamydia amoebophila UWE25] Length = 458 Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 65/191 (34%), Positives = 104/191 (54%), Gaps = 14/191 (7%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 +I ++G PNVGKS+L N L+ K A+V PG TRD L +NG+ + DTAGI + Sbjct: 227 SICLIGCPNVGKSSLMNALLDKDRAIVSPIPGTTRDVLEDHLRLNGLHIKLSDTAGIREA 286 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPI---IIVSNK 120 N S+ ++ +++ A+ EA LIL ++D+ G+ D + K +P I++ NK Sbjct: 287 -NESVEQEGIRRSKKAMQEADLILLVLDAHKGLEKEDQELL-----KQVPFHKTIVIWNK 340 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +D + RN + L+ +V +SA+ +G ELH I I Q P E++ N R Sbjct: 341 ID--LNPRN---LPCLEVPFLVHLSAKEKIGLEELHQTIDTIIWQDGPPSKEEILITNVR 395 Query: 181 NEESPKENITS 191 ++E+ E+I S Sbjct: 396 HKEALIESIES 406 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 40/123 (32%), Positives = 71/123 (57%), Gaps = 5/123 (4%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 L I ++G PNVGKS+L+N LL +R + G TRD + I++ DTAG+R+ Sbjct: 226 LSICLIGCPNVGKSSLMNALLDKDRAIVSPIPGTTRDVLEDHLRLNGLHIKLSDTAGIRE 285 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 + ES+EQ+ +++S ++++ + +++LDA EK+D ++ V H ++ NK Sbjct: 286 AN---ESVEQEGIRRSKKAMQEADLILLVLDAHKGLEKEDQELLKQV--PFHKTIVIWNK 340 Query: 324 WDM 326 D+ Sbjct: 341 IDL 343 >gi|157737854|ref|YP_001490538.1| tRNA modification GTPase TrmE [Arcobacter butzleri RM4018] gi|205829054|sp|A8EV95|MNME_ARCB4 RecName: Full=tRNA modification GTPase mnmE gi|157699708|gb|ABV67868.1| tRNA modification GTPase [Arcobacter butzleri RM4018] Length = 446 Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 53/164 (32%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 164 KQKYPNHPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRL 223 ++ P E IEN K + S K + T E + + + ++A++G+PNVGKS+L+N+L Sbjct: 178 EEDLPTDIYEQIEN-KMQKISLKLSNTLEASRRREGMIEGFKVAIIGKPNVGKSSLLNKL 236 Query: 224 LGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSV 283 L ++R + +G TRD++ S H I+I DTAG+R S + E + ++KS+Q++ Sbjct: 237 LNFDRAIISDIAGTTRDTIEESVRIGTHIIKIVDTAGIRDASDVIEKI---GIEKSIQAI 293 Query: 284 RTCETTIVLLDATIPFEKQDLRIVDSV-FNTGHAVVLALNKWDM 326 + I L D + + +D +I+D + N+ V++ LNK D+ Sbjct: 294 NEADIVIALFDNSKICDDEDKKILDLIKENSDKKVIVVLNKSDL 337 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 49/149 (32%), Positives = 80/149 (53%), Gaps = 8/149 (5%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + +AI+G PNVGKS+L N+L+ A++ + G TRD + I I IVDTAGI D Sbjct: 217 FKVAIIGKPNVGKSSLLNKLLNFDRAIISDIAGTTRDTIEESVRIGTHIIKIVDTAGIRD 276 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRK-KNIPIIIVSNKM 121 + I K +++ AINEA +++ L D+ D I +++ + +I+V NK Sbjct: 277 ASDV-IEKIGIEKSIQAINEADIVIALFDNSKICDDEDKKILDLIKENSDKKVIVVLNKS 335 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDL 150 D +N ++ LD +E+S + D+ Sbjct: 336 DL----QNQFDKNVLD--SFIELSTKEDI 358 >gi|302393075|ref|YP_003828895.1| tRNA modification GTPase trmE [Acetohalobium arabaticum DSM 5501] gi|302205152|gb|ADL13830.1| tRNA modification GTPase trmE [Acetohalobium arabaticum DSM 5501] Length = 463 Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 53/154 (34%), Positives = 85/154 (55%), Gaps = 3/154 (1%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+++ A+V PG TRD + I+G+ I+DTAGI + +N Sbjct: 229 AIIGKPNVGKSSLLNALLRENRAIVTEVPGTTRDVIEEVINIDGIPLKIIDTAGIREAEN 288 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 + K +++E + A L+L ++D+ GIT D I K+ I++ ++ ++ Sbjct: 289 -EVEKIGIEKSEKFLKRADLVLLVLDAHCGITDEDRKIIGLAEGKDTIIVVNKTDLEPKL 347 Query: 126 AQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVI 159 A E LD + +VE SA +G EL +I Sbjct: 348 AVEELKE--ELDMEAVVETSATEGIGIKELEELI 379 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 71/127 (55%), Gaps = 5/127 (3%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + ++ A++G+PNVGKS+L+N LL NR + G TRD + N P++I DTA Sbjct: 222 VKEGIQTAIIGKPNVGKSSLLNALLRENRAIVTEVPGTTRDVIEEVINIDGIPLKIIDTA 281 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R+ +E+ ++KS + ++ + +++LDA +D +I+ G ++ Sbjct: 282 GIREAEN---EVEKIGIEKSEKFLKRADLVLLVLDAHCGITDEDRKIIG--LAEGKDTII 336 Query: 320 ALNKWDM 326 +NK D+ Sbjct: 337 VVNKTDL 343 >gi|283778508|ref|YP_003369263.1| small GTP-binding protein [Pirellula staleyi DSM 6068] gi|283436961|gb|ADB15403.1| small GTP-binding protein [Pirellula staleyi DSM 6068] Length = 407 Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 43/129 (33%), Positives = 78/129 (60%), Gaps = 4/129 (3%) Query: 199 NISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDT 258 ++++P R+ +VGRPN GKS L+N+L+GY R + Q G TRD V ++ + +EI DT Sbjct: 191 HLTEPYRVTIVGRPNAGKSALLNQLVGYARAMVFDQPGTTRDVVQVTTALGGYAVEISDT 250 Query: 259 AGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVF-NTGHAV 317 AG+R+ S E +E++ +++++ S+ TC+ +++ D + P D + V A+ Sbjct: 251 AGVRETS---EPIEREGIERTLASIATCDLALLVFDQSAPLTADDQAFLAQVLPRLTAAL 307 Query: 318 VLALNKWDM 326 ++ NK D+ Sbjct: 308 IVVGNKSDL 316 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 42/121 (34%), Positives = 61/121 (50%), Gaps = 2/121 (1%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 Y + IVG PN GKS L N+LV A+V + PG TRD + + G I DTAG+ + Sbjct: 196 YRVTIVGRPNAGKSALLNQLVGYARAMVFDQPGTTRDVVQVTTALGGYAVEISDTAGVRE 255 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHA-ITSFLRKKNIPIIIVSNKM 121 I ++ ++T +I L L + D A +T D A + L + +I+V NK Sbjct: 256 TSE-PIEREGIERTLASIATCDLALLVFDQSAPLTADDQAFLAQVLPRLTAALIVVGNKS 314 Query: 122 D 122 D Sbjct: 315 D 315 >gi|11465467|ref|NP_045142.1| thiophen and furan oxidation protein [Cyanidium caldarium] gi|14195300|sp|Q9TLX6|MNME_CYACA RecName: Full=Probable tRNA modification GTPase mnmE gi|6466370|gb|AAF12952.1|AF022186_75 unknown [Cyanidium caldarium] Length = 465 Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 52/177 (29%), Positives = 98/177 (55%), Gaps = 3/177 (1%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + I+G PNVGKS+L N + K++ ++V N PG TRD + + ++ + + DTAGI Sbjct: 224 VCIIGKPNVGKSSLLNAIAKRECSIVTNFPGTTRDIVSFETMLGNTLVRLYDTAGIRQSV 283 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + I K +TEL ++E ++ F++D+ G++ D I + L N +I+ NK+D + Sbjct: 284 D-EIEKIGISKTELFVDECQIVFFVLDAIQGLSSEDSVIFNKLNLMNKNFVILINKIDKK 342 Query: 125 IAQR--NFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNK 179 + ++ YE + I+E+SA ++G +L++ I + ++ + P+ N K Sbjct: 343 VQRKIDEIYETLKCSNRRIIEVSAIKNIGLEKLNNCILDLSSKEDFDLPVHFSVNCK 399 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 39/140 (27%), Positives = 71/140 (50%), Gaps = 5/140 (3%) Query: 186 KENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSIS 245 K+ I+S K V +++ ++ ++G+PNVGKS+L+N + + + G TRD VS Sbjct: 206 KDLISSYNK--VSKLNEGTKVCIIGKPNVGKSSLLNAIAKRECSIVTNFPGTTRDIVSFE 263 Query: 246 WNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLR 305 N + ++DTAG+R+ + +E+ + K+ V C+ +LDA +D Sbjct: 264 TMLGNTLVRLYDTAGIRQS---VDEIEKIGISKTELFVDECQIVFFVLDAIQGLSSEDSV 320 Query: 306 IVDSVFNTGHAVVLALNKWD 325 I + + V+ +NK D Sbjct: 321 IFNKLNLMNKNFVILINKID 340 >gi|288819136|ref|YP_003433484.1| tRNA modification GTPase [Hydrogenobacter thermophilus TK-6] gi|288788536|dbj|BAI70283.1| tRNA modification GTPase [Hydrogenobacter thermophilus TK-6] gi|308752720|gb|ADO46203.1| tRNA modification GTPase TrmE [Hydrogenobacter thermophilus TK-6] Length = 450 Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 64/209 (30%), Positives = 104/209 (49%), Gaps = 26/209 (12%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + K + +A+VG+PNVGKS+L N LLG R + G TRD +S + + PI + DTA Sbjct: 215 LRKGINLAIVGKPNVGKSSLFNALLGRERAIVTEVPGTTRDFLSEELHMEGVPINLIDTA 274 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R+ + ES+ VK+S+ S+ + + + ++DA+ P EK D + + V H V Sbjct: 275 GIRETEDVVESI---GVKRSIDSINSADMVLFVVDASKPLEKDDWDVYNLVKQRDHIKV- 330 Query: 320 ALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINT--ISGRTGEGLDDL---MVSVLEI 374 LNK D+ D P I I+ + +S + G+G+ DL M+ L + Sbjct: 331 -LNKVDLGLD----------------PSIAKIFPDGVRVSAKMGDGMQDLKKVMLEKLGV 373 Query: 375 NKLWKTRITTSYLNSWLQKTQLQNPPPTI 403 ++ S ++ L K L+ P I Sbjct: 374 FGYEGMKVYVSARHAQLLKKSLEIIEPLI 402 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 42/118 (35%), Positives = 73/118 (61%), Gaps = 3/118 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKS+LFN L+ ++ A+V PG TRD L + + GV N++DTAGI + + Sbjct: 221 LAIVGKPNVGKSSLFNALLGRERAIVTEVPGTTRDFLSEELHMEGVPINLIDTAGIRETE 280 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + + + + +IN A ++LF++D+ + D + + +++++ I V NK+D Sbjct: 281 DVVESIGVKRSID-SINSADMVLFVVDASKPLEKDDWDVYNLVKQRD--HIKVLNKVD 335 >gi|319789803|ref|YP_004151436.1| tRNA modification GTPase TrmE [Thermovibrio ammonificans HB-1] gi|317114305|gb|ADU96795.1| tRNA modification GTPase TrmE [Thermovibrio ammonificans HB-1] Length = 469 Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 58/211 (27%), Positives = 113/211 (53%), Gaps = 19/211 (9%) Query: 167 YPNHPLEMIENNKRNEE-----SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLIN 221 +P+ +E+IE+++ E E + + + I + +++A+VGRPNVGKS+L+N Sbjct: 187 FPDEEVEIIESHRIKEHLRGLIDELEKLIQTYREG-RYIREGIKVAIVGRPNVGKSSLLN 245 Query: 222 RLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQ 281 +L R + G TRD + + +K P+ + DTAG+R+ + + E + ++KS++ Sbjct: 246 AILQEERAIVTEIPGTTRDVIEETVTFKGLPVRLLDTAGIRESADVVERI---GIEKSLK 302 Query: 282 SVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKA 341 S++ + + +LD + ++DL+I S+ N V+ +NK D L L + Sbjct: 303 SLKEADVVLFVLDGSEGLTEEDLKIA-SLLNRKDNVIAVINKAD-------LALKLTCEQ 354 Query: 342 IKNLPQIGDIYINTISGRTGEGLDDLMVSVL 372 +K +G I IS + G+G+D+L +++ Sbjct: 355 LKETLGVGRCVI--ISAKEGKGIDELASAMM 383 Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 52/157 (33%), Positives = 85/157 (54%), Gaps = 4/157 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKS+L N +++++ A+V PG TRD + G+ ++DTAGI + Sbjct: 230 VAIVGRPNVGKSSLLNAILQEERAIVTEIPGTTRDVIEETVTFKGLPVRLLDTAGIRE-- 287 Query: 65 NCSIAKQMNDQTEL-AINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + + +++ + L ++ EA ++LF++D G+T D I S L +K+ +I V NK D Sbjct: 288 SADVVERIGIEKSLKSLKEADVVLFVLDGSEGLTEEDLKIASLLNRKD-NVIAVINKADL 346 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 + +L V ISA+ G EL S + Sbjct: 347 ALKLTCEQLKETLGVGRCVIISAKEGKGIDELASAMM 383 >gi|229829511|ref|ZP_04455580.1| hypothetical protein GCWU000342_01603 [Shuttleworthia satelles DSM 14600] gi|229791942|gb|EEP28056.1| hypothetical protein GCWU000342_01603 [Shuttleworthia satelles DSM 14600] Length = 482 Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 58/171 (33%), Positives = 98/171 (57%), Gaps = 16/171 (9%) Query: 207 AVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSR 266 A+VGRPN GKS+L+N L G +R + G TRD++ N + + DTAG+R+ Sbjct: 241 AIVGRPNAGKSSLLNALAGRDRAIVTDIPGTTRDTLEERVRLGNLALRLIDTAGIRESE- 299 Query: 267 ITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTG---HAVVLALNK 323 + +EQ V+K+ +S+ + I ++DA++P E +D ++++ + + G H+++L LNK Sbjct: 300 --DRIEQIGVEKARKSMEEADLIIFVMDASLPLENEDCKMLNQLSSHGYLEHSIIL-LNK 356 Query: 324 WDMVSDKLNLLQDLRTKAIKN-LPQIGDIYINTISGRTGEGLDDLMVSVLE 373 D+ S L + I+ LPQ+ I ++S R EGL DL+ S +E Sbjct: 357 MDLTS-------ILSAEQIQQVLPQLNPDRILSVSARREEGL-DLLASAIE 399 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 56/187 (29%), Positives = 95/187 (50%), Gaps = 6/187 (3%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AIVG PN GKS+L N L + A+V + PG TRD L + + + ++DTAGI + ++ Sbjct: 241 AIVGRPNAGKSSLLNALAGRDRAIVTDIPGTTRDTLEERVRLGNLALRLIDTAGIRESED 300 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNI--PIIIVSNKMD- 122 I + ++ ++ EA LI+F++D+ + D + + L II+ NKMD Sbjct: 301 -RIEQIGVEKARKSMEEADLIIFVMDASLPLENEDCKMLNQLSSHGYLEHSIILLNKMDL 359 Query: 123 TRI--AQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 T I A++ + L+ I+ +SA + G L S I ++F E++ N R Sbjct: 360 TSILSAEQIQQVLPQLNPDRILSVSARREEGLDLLASAIERMFFTGQVRENQEILITNAR 419 Query: 181 NEESPKE 187 + + +E Sbjct: 420 HTYALQE 426 >gi|281418695|ref|ZP_06249714.1| tRNA modification GTPase TrmE [Clostridium thermocellum JW20] gi|281407779|gb|EFB38038.1| tRNA modification GTPase TrmE [Clostridium thermocellum JW20] Length = 459 Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 63/176 (35%), Positives = 101/176 (57%), Gaps = 5/176 (2%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 I+G PNVGKS+L N L K A+V + PG TRD + ING+ I+DTAGI + ++ Sbjct: 226 IIGKPNVGKSSLLNELSGKSKAIVTDIPGTTRDIIEEYININGIPLRIIDTAGIRETEDV 285 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 + K ++T AI+EA L++ +ID+K G+ D+ I + L K + I+I NK+D + Sbjct: 286 -VEKIGVEKTHRAIDEADLVIMMIDAKRGMDEDDNRILTMLGDKKLIILI--NKIDL-VD 341 Query: 127 QRNFYEIYS-LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 ++ EI S L ++ + S + G SEL + I ++F Q + E++ N R+ Sbjct: 342 EKQINEIESLLKGRKCIRTSVKEGTGISELENAITELFVQGEVSVNEEILLTNIRH 397 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 50/168 (29%), Positives = 89/168 (52%), Gaps = 9/168 (5%) Query: 167 YPNHPLEMIENNKRNEE--SPKENITSEGKSSVKN--ISKPLRIAVVGRPNVGKSTLINR 222 YP H +E I N EE KE + KS + I + + ++G+PNVGKS+L+N Sbjct: 181 YPEHDIEEITGNMVYEEIGKIKEKLCDIVKSFERGRIIREGIDAVIIGKPNVGKSSLLNE 240 Query: 223 LLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQS 282 L G ++ + G TRD + N P+ I DTAG+R+ + E + V+K+ ++ Sbjct: 241 LSGKSKAIVTDIPGTTRDIIEEYININGIPLRIIDTAGIRETEDVVEKI---GVEKTHRA 297 Query: 283 VRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDK 330 + + I+++DA ++ D RI+ + + +++ +NK D+V +K Sbjct: 298 IDEADLVIMMIDAKRGMDEDDNRILTMLGD--KKLIILINKIDLVDEK 343 >gi|125974850|ref|YP_001038760.1| tRNA modification GTPase TrmE [Clostridium thermocellum ATCC 27405] gi|256003893|ref|ZP_05428880.1| tRNA modification GTPase TrmE [Clostridium thermocellum DSM 2360] gi|205829145|sp|A3DHY8|MNME_CLOTH RecName: Full=tRNA modification GTPase mnmE gi|125715075|gb|ABN53567.1| tRNA modification GTPase trmE [Clostridium thermocellum ATCC 27405] gi|255992231|gb|EEU02326.1| tRNA modification GTPase TrmE [Clostridium thermocellum DSM 2360] gi|316941972|gb|ADU76006.1| tRNA modification GTPase TrmE [Clostridium thermocellum DSM 1313] Length = 459 Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 63/176 (35%), Positives = 101/176 (57%), Gaps = 5/176 (2%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 I+G PNVGKS+L N L K A+V + PG TRD + ING+ I+DTAGI + ++ Sbjct: 226 IIGKPNVGKSSLLNELSGKSKAIVTDIPGTTRDIIEEYININGIPLRIIDTAGIRETEDV 285 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 + K ++T AI+EA L++ +ID+K G+ D+ I + L K + I+I NK+D + Sbjct: 286 -VEKIGVEKTHRAIDEADLVIMMIDAKRGMDEDDNRILTMLGDKKLIILI--NKIDL-VD 341 Query: 127 QRNFYEIYS-LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 ++ EI S L ++ + S + G SEL + I ++F Q + E++ N R+ Sbjct: 342 EKQINEIESLLKGRKCIRTSVKEGTGISELENAITELFVQGEVSVNEEILLTNIRH 397 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 50/168 (29%), Positives = 89/168 (52%), Gaps = 9/168 (5%) Query: 167 YPNHPLEMIENNKRNEE--SPKENITSEGKSSVKN--ISKPLRIAVVGRPNVGKSTLINR 222 YP H +E I N EE KE + KS + I + + ++G+PNVGKS+L+N Sbjct: 181 YPEHDIEEITGNMVYEEIGKIKEKLCDIVKSFERGRIIREGIDAVIIGKPNVGKSSLLNE 240 Query: 223 LLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQS 282 L G ++ + G TRD + N P+ I DTAG+R+ + E + V+K+ ++ Sbjct: 241 LSGKSKAIVTDIPGTTRDIIEEYININGIPLRIIDTAGIRETEDVVEKI---GVEKTHRA 297 Query: 283 VRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDK 330 + + I+++DA ++ D RI+ + + +++ +NK D+V +K Sbjct: 298 IDEADLVIMMIDAKRGMDEDDNRILTMLGD--KKLIILINKIDLVDEK 343 >gi|224418482|ref|ZP_03656488.1| tRNA modification GTPase TrmE [Helicobacter canadensis MIT 98-5491] gi|253827795|ref|ZP_04870680.1| tRNA modification GTPase [Helicobacter canadensis MIT 98-5491] gi|313142012|ref|ZP_07804205.1| tRNA modification GTPase TrmE [Helicobacter canadensis MIT 98-5491] gi|253511201|gb|EES89860.1| tRNA modification GTPase [Helicobacter canadensis MIT 98-5491] gi|313131043|gb|EFR48660.1| tRNA modification GTPase TrmE [Helicobacter canadensis MIT 98-5491] Length = 461 Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 47/160 (29%), Positives = 94/160 (58%), Gaps = 7/160 (4%) Query: 171 PLEMIENNKRNEESPKENITSEGKSSV--KNISKPLRIAVVGRPNVGKSTLINRLLGYNR 228 P +++EN +S + + + + S+ K++ + R+ ++G+PNVGKS+L+N LL +R Sbjct: 186 PQDLMENLLNRLDSTLQTLQNLLEQSIQKKSLFEGYRLCIIGKPNVGKSSLLNALLHEDR 245 Query: 229 LLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCET 288 + +G TRDS+ ++ + H + + DTAG+R+ I E+ K +++S+Q + Sbjct: 246 AIVSDIAGTTRDSIEENFLLEGHLLRLIDTAGIRQSQDIIET---KGIERSLQKAEQSDI 302 Query: 289 TIVLLDATIPFEKQDLRIVD--SVFNTGHAVVLALNKWDM 326 I L D++ P E++DL+I++ + +++ LNK D+ Sbjct: 303 LIALFDSSRPLEEEDLKIIEILKTYQDSKKIIVLLNKTDL 342 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 37/124 (29%), Positives = 66/124 (53%), Gaps = 3/124 (2%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 Y + I+G PNVGKS+L N L+ + A+V + G TRD + ++ G + ++DTAGI Sbjct: 221 YRLCIIGKPNVGKSSLLNALLHEDRAIVSDIAGTTRDSIEENFLLEGHLLRLIDTAGIRQ 280 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLR--KKNIPIIIVSNK 120 ++ K + + A ++ +++ L DS + D I L+ + + II++ NK Sbjct: 281 SQDIIETKGIERSLQKA-EQSDILIALFDSSRPLEEEDLKIIEILKTYQDSKKIIVLLNK 339 Query: 121 MDTR 124 D + Sbjct: 340 TDLK 343 >gi|153840641|ref|ZP_01993308.1| GTP-binding protein EngA [Vibrio parahaemolyticus AQ3810] gi|149745697|gb|EDM56827.1| GTP-binding protein EngA [Vibrio parahaemolyticus AQ3810] Length = 109 Score = 90.1 bits (222), Expect = 6e-16, Method: Composition-based stats. Identities = 45/97 (46%), Positives = 67/97 (69%), Gaps = 2/97 (2%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGV-IFNIVDTAG 59 M+ +A+VG PNVGKSTLFNRL + + A+V + PG+TRDR YGQA ++ F ++DT G Sbjct: 1 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQARLDEEHEFIVIDTGG 60 Query: 60 IADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGI 96 I DG + +M +Q+ AI+EA ++LFL+D + + Sbjct: 61 I-DGTEEGVETKMAEQSLAAIDEADVVLFLVDGRQTV 96 Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 4/91 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNW-KNHPIEIFDTAGMRKP 264 +A+VGRPNVGKSTL NRL L G+TRD + H + DT G+ Sbjct: 5 VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQARLDEEHEFIVIDTGGI--- 61 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDA 295 E +E K ++S+ ++ + + L+D Sbjct: 62 DGTEEGVETKMAEQSLAAIDEADVVLFLVDG 92 >gi|154173921|ref|YP_001408433.1| tRNA modification GTPase TrmE [Campylobacter curvus 525.92] gi|205829128|sp|A7GYZ1|MNME_CAMC5 RecName: Full=tRNA modification GTPase mnmE gi|112802942|gb|EAU00286.1| tRNA modification GTPase TrmE [Campylobacter curvus 525.92] Length = 444 Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 42/124 (33%), Positives = 75/124 (60%), Gaps = 3/124 (2%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 ++A+VG+PNVGKS+++N LL Y R + ++G TRD + ++ H + I DTAG+RK Sbjct: 219 FKVAIVGKPNVGKSSILNSLLSYERAIISDEAGTTRDRIEENFKVGTHLVRIIDTAGIRK 278 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 + +E+ ++ S+ ++ + + + D++ ++QD RIV+ V N+G V LNK Sbjct: 279 NAG---KIEKIGIRYSLAAIEEADIVLAVFDSSSASDEQDERIVELVKNSGKKVFFILNK 335 Query: 324 WDMV 327 D+ Sbjct: 336 SDLA 339 Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 44/146 (30%), Positives = 73/146 (50%), Gaps = 10/146 (6%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + +AIVG PNVGKS++ N L+ + A++ + G TRDR+ + + I+DTAGI Sbjct: 219 FKVAIVGKPNVGKSSILNSLLSYERAIISDEAGTTRDRIEENFKVGTHLVRIIDTAGIR- 277 Query: 63 GKNCSIAKQMNDQTEL-AINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 KN +++ + L AI EA ++L + DS + D I ++ + + NK Sbjct: 278 -KNAGKIEKIGIRYSLAAIEEADIVLAVFDSSSASDEQDERIVELVKNSGKKVFFILNKS 336 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAE 147 D + LD ++ISA+ Sbjct: 337 DLAFK-------FDLDLSPSIKISAK 355 >gi|308375656|ref|ZP_07668082.1| putative small GTP-binding protein domain protein [Mycobacterium tuberculosis SUMu007] gi|308345614|gb|EFP34465.1| putative small GTP-binding protein domain protein [Mycobacterium tuberculosis SUMu007] Length = 215 Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 50/161 (31%), Positives = 86/161 (53%), Gaps = 1/161 (0%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ A+ G F + DT G Sbjct: 29 VAVVGRPNVGKSTLVNRILGRREAVVQDIPGVTRDRVCYDALWTGRRFVVQDTGGWEPNA 88 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + + +Q +A+ A ++ ++D+ G T D A L + P+ + +NK+D+ Sbjct: 89 K-GLQRLVAEQASVAMRTADAVILVVDAGVGATAADEAAARILLRSGKPVFLAANKVDSE 147 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQ 165 + + ++SL E ISA H G ++L + + Sbjct: 148 KGESDAAALWSLGLGEPHAISAMHGRGVADLLDGVLAALPE 188 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 56/198 (28%), Positives = 92/198 (46%), Gaps = 16/198 (8%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +AVVGRPNVGKSTL+NR+LG + G+TRD V W + DT G +P+ Sbjct: 29 VAVVGRPNVGKSTLVNRILGRREAVVQDIPGVTRDRVCYDALWTGRRFVVQDTGGW-EPN 87 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + L++ +++ ++RT + I+++DA + D + +G V LA NK D Sbjct: 88 --AKGLQRLVAEQASVAMRTADAVILVVDAGVGATAADEAAARILLRSGKPVFLAANKVD 145 Query: 326 MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVL-EINKLWKTRITT 384 + + L +G + IS G G+ DL+ VL + ++ R Sbjct: 146 SEKGESD---------AAALWSLGLGEPHAISAMHGRGVADLLDGVLAALPEVGSPRRRA 196 Query: 385 SYLNSW---LQKTQLQNP 399 + L W + +T + P Sbjct: 197 AVLAGWRWSVSRTSARAP 214 >gi|205373828|ref|ZP_03226630.1| GTP-binding protein EngA [Bacillus coahuilensis m4-4] Length = 175 Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 49/164 (29%), Positives = 82/164 (50%) Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 +QD +I + G A+++ +NKWD V ++D K +N + I +S T Sbjct: 12 EQDKKIAGYAHDAGRAIIIVVNKWDAVEKDEKTMKDFEEKIRENFQFLDYAPIVYLSALT 71 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSP 420 + + LM + + ++ R+ +S LN + NP PT + R+ Y TQ+ P Sbjct: 72 KKRIHTLMPVINQASENHALRVQSSILNEVITDAVAMNPAPTDKGKRLRIYYATQVSVKP 131 Query: 421 PSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 P+F++F P + SY+R+L NRLR F G PIR+ ++ K Sbjct: 132 PTFVVFVNEPELMHFSYERFLQNRLREAFGFEGTPIRILTRARK 175 >gi|291520339|emb|CBK75560.1| small GTP-binding protein domain [Butyrivibrio fibrisolvens 16/4] Length = 273 Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 56/157 (35%), Positives = 89/157 (56%), Gaps = 4/157 (2%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 I+G PN GKS+L N L +++ A+V + PG TRD L Q INGV NI+DTAGI + + Sbjct: 92 ILGKPNAGKSSLLNTLSRRERAIVTDIPGTTRDTLEEQITINGVSLNIIDTAGIRETDDI 151 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 + K D+ +I++A LILF+IDS + DH I + K + I++ + + ++I+ Sbjct: 152 -VEKIGVDKALDSIDDADLILFVIDSSRPLDENDHFIIDKIMDKKVIILLNKSDLVSKIS 210 Query: 127 QRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 + Y+ Y+ K ++ S+ G L S I +F Sbjct: 211 EEEIYKKYN---KPVISFSSVSLDGLKALESKITDMF 244 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 66/121 (54%), Gaps = 5/121 (4%) Query: 208 VVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRI 267 ++G+PN GKS+L+N L R + G TRD++ + I DTAG+R+ I Sbjct: 92 ILGKPNAGKSSLLNTLSRRERAIVTDIPGTTRDTLEEQITINGVSLNIIDTAGIRETDDI 151 Query: 268 TESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMV 327 E + V K++ S+ + + ++D++ P ++ D I+D + + V++ LNK D+V Sbjct: 152 VEKI---GVDKALDSIDDADLILFVIDSSRPLDENDHFIIDKIMD--KKVIILLNKSDLV 206 Query: 328 S 328 S Sbjct: 207 S 207 >gi|62320818|dbj|BAD93758.1| hypothetical protein [Arabidopsis thaliana] Length = 370 Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 63/191 (32%), Positives = 95/191 (49%), Gaps = 33/191 (17%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 ++ +AIVG PNVGKS LFNRLV + A+V + PG+TRDRLYG++ F +VDT G+ Sbjct: 157 LLQRVAIVGRPNVGKSALFNRLVGENRAIVVDEPGVTRDRLYGRSYWGDQEFVVVDTGGV 216 Query: 61 A--------------------------DGKNCSIAKQ---MNDQTELAINEAHLILFLID 91 + +IA+ + Q A++E+ +I+F++D Sbjct: 217 MTVSKSPSGVMEELNVSTTIGMEGIPLSSREAAIARMPSMIEKQATAAVDESAVIIFVVD 276 Query: 92 SKAGITPYDHAITSFLRK--KNIPIIIVSNKMDT-RIAQRNFYEIYSLDFKEIVEISAEH 148 +AG + D I +LRK + II+ N ++ R E +SL F I ISA Sbjct: 277 GQAGPSGADVEIADWLRKYYSHKYIILAVNMCESPRKGLMQASEFWSLGFTPI-PISALS 335 Query: 149 DLGTSELHSVI 159 GT EL ++ Sbjct: 336 GTGTGELLDLV 346 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 57/198 (28%), Positives = 89/198 (44%), Gaps = 37/198 (18%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGM--- 261 R+A+VGRPNVGKS L NRL+G NR + + G+TRD + W + + DT G+ Sbjct: 160 RVAIVGRPNVGKSALFNRLVGENRAIVVDEPGVTRDRLYGRSYWGDQEFVVVDTGGVMTV 219 Query: 262 -RKPSRITESLEQKTV-----------------------KKSMQSVRTCETTIVLLDATI 297 + PS + E L T K++ +V I ++D Sbjct: 220 SKSPSGVMEELNVSTTIGMEGIPLSSREAAIARMPSMIEKQATAAVDESAVIIFVVDGQA 279 Query: 298 PFEKQDLRIVDSV--FNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINT 355 D+ I D + + + ++LA+N + S + L+Q ++ P I I+ Sbjct: 280 GPSGADVEIADWLRKYYSHKYIILAVNMCE--SPRKGLMQASEFWSLGFTP----IPISA 333 Query: 356 ISGRTGEG-LDDLMVSVL 372 +SG TG G L DL+ S L Sbjct: 334 LSG-TGTGELLDLVCSGL 350 >gi|283956362|ref|ZP_06373842.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni 1336] gi|283792082|gb|EFC30871.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni 1336] Length = 442 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 59/185 (31%), Positives = 100/185 (54%), Gaps = 16/185 (8%) Query: 196 SVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEI 255 S K + + +IA+VG+PNVGKS+L+N LL Y R + +G TRD++ S+ H + I Sbjct: 207 SRKGLIEGFKIAIVGKPNVGKSSLLNALLSYERAIVSDIAGTTRDTIEESFKLGTHLLRI 266 Query: 256 FDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGH 315 DTAG+R+ +++EQ V S +S+ + + + DA+ +K+D +I D + NT Sbjct: 267 IDTAGIRESK---DAIEQIGVALSKKSLEDADIILAVFDASRVQDKEDEKIFDLLANTDK 323 Query: 316 AVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYI------NTISGRTGEGLDDLMV 369 + LNK D+ N+ ++++ K L DI + N ++ EG +MV Sbjct: 324 KIFWILNKSDLE----NVFKNIQNKNFIKLSAQKDITLLKEELQNYLNSFDSEG---IMV 376 Query: 370 SVLEI 374 S L++ Sbjct: 377 SSLDL 381 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/148 (29%), Positives = 74/148 (50%), Gaps = 7/148 (4%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + IAIVG PNVGKS+L N L+ + A+V + G TRD + + + I+DTAGI + Sbjct: 215 FKIAIVGKPNVGKSSLLNALLSYERAIVSDIAGTTRDTIEESFKLGTHLLRIIDTAGIRE 274 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 K+ +I + ++ ++ +A +IL + D+ D I L + I + NK D Sbjct: 275 SKD-AIEQIGVALSKKSLEDADIILAVFDASRVQDKEDEKIFDLLANTDKKIFWILNKSD 333 Query: 123 TRIAQRNFYEIYSLDFKEIVEISAEHDL 150 +N K +++SA+ D+ Sbjct: 334 LENVFKNIQN------KNFIKLSAQKDI 355 >gi|148269793|ref|YP_001244253.1| tRNA modification GTPase TrmE [Thermotoga petrophila RKU-1] gi|205829183|sp|A5IKF4|MNME_THEP1 RecName: Full=tRNA modification GTPase mnmE gi|147735337|gb|ABQ46677.1| tRNA modification GTPase trmE [Thermotoga petrophila RKU-1] Length = 450 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 60/204 (29%), Positives = 110/204 (53%), Gaps = 7/204 (3%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + + IVG PNVGKSTL NRL+ + A+V + PG TRD + + +I G++F IVDTAG+ Sbjct: 212 FRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRS 271 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 N + + ++T I +A ++LF++D+ + + D I R KN ++V NK+D Sbjct: 272 ETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILE--RIKNKRYLVVINKVD 329 Query: 123 T--RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +I + D + +V+ISA G +L I++ ++ + +I N ++ Sbjct: 330 VVEKINEEEIKNKLGTD-RHMVKISALKGEGLEKLEEAIYRETQEIFERGSDSLITNLRQ 388 Query: 181 NEESPKENITSEGKSSVKNISKPL 204 + EN+ + ++K++ + + Sbjct: 389 KQ--LLENVKGHLEDAIKSLKEGM 410 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 63/200 (31%), Positives = 113/200 (56%), Gaps = 14/200 (7%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 +++ R+ +VG+PNVGKSTL+NRLL +R + G TRD +S + I DTA Sbjct: 208 LNRGFRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTA 267 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R S + +E+ +++++Q + + + +LDA+ P +++D +I++ + N + VV Sbjct: 268 GVR--SETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYLVV- 324 Query: 320 ALNKWDMVSDKLNLLQDLRTKAIKNLPQIG-DIYINTISGRTGEGLDDLMVSVLEINKLW 378 +NK D+V +K+N + IKN ++G D ++ IS GEGL+ L ++ + Sbjct: 325 -INKVDVV-EKIN------EEEIKN--KLGTDRHMVKISALKGEGLEKLEEAIYRETQEI 374 Query: 379 KTRITTSYLNSWLQKTQLQN 398 R + S + + QK L+N Sbjct: 375 FERGSDSLITNLRQKQLLEN 394 >gi|307747860|gb|ADN91130.1| tRNA modification GTPase mnmE [Campylobacter jejuni subsp. jejuni M1] Length = 442 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 47/131 (35%), Positives = 77/131 (58%), Gaps = 3/131 (2%) Query: 196 SVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEI 255 S K + + +IA+VG+PNVGKS+L+N LL Y R + +G TRD++ S+ H + I Sbjct: 207 SKKGLLEGFKIAIVGKPNVGKSSLLNALLSYERAIVSDIAGTTRDTIEESFKLGTHLLRI 266 Query: 256 FDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGH 315 DTAG+R+ +++EQ V S +S+ + + + DA+ +K+D +I D + NT Sbjct: 267 IDTAGIRESK---DAIEQIGVALSKKSLEDADIILAVFDASRVQDKEDEKIFDLLANTDK 323 Query: 316 AVVLALNKWDM 326 + LNK D+ Sbjct: 324 KIFWILNKSDL 334 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 44/148 (29%), Positives = 74/148 (50%), Gaps = 7/148 (4%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + IAIVG PNVGKS+L N L+ + A+V + G TRD + + + I+DTAGI + Sbjct: 215 FKIAIVGKPNVGKSSLLNALLSYERAIVSDIAGTTRDTIEESFKLGTHLLRIIDTAGIRE 274 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 K+ +I + ++ ++ +A +IL + D+ D I L + I + NK D Sbjct: 275 SKD-AIEQIGVALSKKSLEDADIILAVFDASRVQDKEDEKIFDLLANTDKKIFWILNKSD 333 Query: 123 TRIAQRNFYEIYSLDFKEIVEISAEHDL 150 +N K +++SA+ D+ Sbjct: 334 LENVFKNTQN------KNFIKLSAQKDI 355 >gi|218132942|ref|ZP_03461746.1| hypothetical protein BACPEC_00803 [Bacteroides pectinophilus ATCC 43243] gi|217991815|gb|EEC57819.1| hypothetical protein BACPEC_00803 [Bacteroides pectinophilus ATCC 43243] Length = 322 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 60/161 (37%), Positives = 87/161 (54%), Gaps = 7/161 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKSTL NR++ +K+A+ N P TR+R+ + +DT GI KN Sbjct: 30 AIIGRPNVGKSTLMNRIIGQKIAITSNKPQTTRNRIQTVYTDDRGQIVFLDTPGIHKAKN 89 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 + + M E I+E L+L+L++ + I D I L K P+++V NK+DT I Sbjct: 90 -KLGEYMVGAAEKTIDEVDLVLWLVEPSSFIGAGDEHILEKLSKVKSPVVLVINKIDT-I 147 Query: 126 AQRNFYEIYS-----LDFKEIVEISAEHDLGTSELHSVIFK 161 + + + +DF EIV ISA GT +L VIFK Sbjct: 148 KKEEVLPVIAEYKNKMDFAEIVPISAYDGTGTDDLVDVIFK 188 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 78/164 (47%), Gaps = 12/164 (7%) Query: 207 AVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSR 266 A++GRPNVGKSTL+NR++G +T ++ TR+ + + I DT G+ K Sbjct: 30 AIIGRPNVGKSTLMNRIIGQKIAITSNKPQTTRNRIQTVYTDDRGQIVFLDTPGIHKAKN 89 Query: 267 ITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 L + V + +++ + + L++ + D I++ + VVL +NK D Sbjct: 90 ---KLGEYMVGAAEKTIDEVDLVLWLVEPSSFIGAGDEHILEKLSKVKSPVVLVINKIDT 146 Query: 327 VSDK--LNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLM 368 + + L ++ + + K + + I IS G G DDL+ Sbjct: 147 IKKEEVLPVIAEYKNKM--DFAE-----IVPISAYDGTGTDDLV 183 >gi|157415218|ref|YP_001482474.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni 81116] gi|172047131|sp|A8FM10|MNME_CAMJ8 RecName: Full=tRNA modification GTPase mnmE gi|157386182|gb|ABV52497.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni 81116] gi|315931242|gb|EFV10213.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni 327] Length = 442 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 47/131 (35%), Positives = 77/131 (58%), Gaps = 3/131 (2%) Query: 196 SVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEI 255 S K + + +IA+VG+PNVGKS+L+N LL Y R + +G TRD++ S+ H + I Sbjct: 207 SKKGLIEGFKIAIVGKPNVGKSSLLNALLSYERAIVSDIAGTTRDTIEESFKLGTHLLRI 266 Query: 256 FDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGH 315 DTAG+R+ +++EQ V S +S+ + + + DA+ +K+D +I D + NT Sbjct: 267 IDTAGIRESK---DAIEQIGVALSKKSLEDADIILAVFDASRVQDKEDEKIFDLLANTDK 323 Query: 316 AVVLALNKWDM 326 + LNK D+ Sbjct: 324 KIFWILNKSDL 334 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 44/148 (29%), Positives = 74/148 (50%), Gaps = 7/148 (4%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + IAIVG PNVGKS+L N L+ + A+V + G TRD + + + I+DTAGI + Sbjct: 215 FKIAIVGKPNVGKSSLLNALLSYERAIVSDIAGTTRDTIEESFKLGTHLLRIIDTAGIRE 274 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 K+ +I + ++ ++ +A +IL + D+ D I L + I + NK D Sbjct: 275 SKD-AIEQIGVALSKKSLEDADIILAVFDASRVQDKEDEKIFDLLANTDKKIFWILNKSD 333 Query: 123 TRIAQRNFYEIYSLDFKEIVEISAEHDL 150 +N K +++SA+ D+ Sbjct: 334 LENVFKNTQN------KNFIKLSAQKDI 355 >gi|82703888|ref|YP_413454.1| tRNA modification GTPase TrmE [Nitrosospira multiformis ATCC 25196] gi|123543757|sp|Q2Y5A9|MNME_NITMU RecName: Full=tRNA modification GTPase mnmE gi|82411953|gb|ABB76062.1| tRNA modification GTPase trmE [Nitrosospira multiformis ATCC 25196] Length = 452 Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 50/118 (42%), Positives = 76/118 (64%), Gaps = 2/118 (1%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKS+L NRL +++A+V PG TRD + I GV +++DTAG+ + + Sbjct: 218 IALVGQPNVGKSSLLNRLAGEEVALVTEVPGTTRDVIRQVIEIEGVPMHLLDTAGLRETE 277 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + +I K +T I++A ++L L+DS+ GITP D AI + L + +I+V NK D Sbjct: 278 D-AIEKMGMARTRSTIDKASIVLLLVDSRVGITPEDQAILASL-PPGLRLIVVHNKTD 333 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 84/169 (49%), Gaps = 14/169 (8%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA+VG+PNVGKS+L+NRL G L G TRD + + P+ + DTAG+R+ Sbjct: 218 IALVGQPNVGKSSLLNRLAGEEVALVTEVPGTTRDVIRQVIEIEGVPMHLLDTAGLRETE 277 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +++E+ + ++ ++ ++L+D+ + +D I+ S G +++ NK D Sbjct: 278 ---DAIEKMGMARTRSTIDKASIVLLLVDSRVGITPEDQAILAS-LPPGLRLIVVHNKTD 333 Query: 326 MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEI 374 ++ N + DI+ +S +TG G+ L +LE+ Sbjct: 334 LLESPPN-------STVSTATATADIW---VSAKTGAGIGSLQQGLLEM 372 >gi|308380152|ref|ZP_07669128.1| putative small GTP-binding protein domain protein [Mycobacterium tuberculosis SUMu011] gi|308362467|gb|EFP51318.1| putative small GTP-binding protein domain protein [Mycobacterium tuberculosis SUMu011] Length = 208 Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 49/147 (33%), Positives = 81/147 (55%), Gaps = 1/147 (0%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTL NR++ ++ AVV + PG+TRDR+ A+ G F + DT G Sbjct: 22 VAVVGRPNVGKSTLVNRILGRREAVVQDIPGVTRDRVCYDALWTGRRFVVQDTGGWEPNA 81 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + + +Q +A+ A ++ ++D+ G T D A L + P+ + +NK+D+ Sbjct: 82 K-GLQRLVAEQASVAMRTADAVILVVDAGVGATAADEAAARILLRSGKPVFLAANKVDSE 140 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLG 151 + + ++SL E ISA H G Sbjct: 141 KGESDAAALWSLGLGEPHAISAMHGRG 167 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 40/118 (33%), Positives = 63/118 (53%), Gaps = 3/118 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +AVVGRPNVGKSTL+NR+LG + G+TRD V W + DT G +P+ Sbjct: 22 VAVVGRPNVGKSTLVNRILGRREAVVQDIPGVTRDRVCYDALWTGRRFVVQDTGGW-EPN 80 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 + L++ +++ ++RT + I+++DA + D + +G V LA NK Sbjct: 81 --AKGLQRLVAEQASVAMRTADAVILVVDAGVGATAADEAAARILLRSGKPVFLAANK 136 >gi|150019907|ref|YP_001312161.1| tRNA modification GTPase TrmE [Clostridium beijerinckii NCIMB 8052] gi|189036196|sp|A6M3M5|MNME_CLOB8 RecName: Full=tRNA modification GTPase mnmE gi|149906372|gb|ABR37205.1| tRNA modification GTPase TrmE [Clostridium beijerinckii NCIMB 8052] Length = 462 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 64/191 (33%), Positives = 103/191 (53%), Gaps = 17/191 (8%) Query: 175 IENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQ 234 I++ N S E + S + K + L I +VG+PNVGKS+L+N LL NR + Sbjct: 200 IKDGIENTNSKIETLLSNADAG-KIVRDGLNIVIVGKPNVGKSSLLNALLRENRAIVTDV 258 Query: 235 SGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLD 294 G TRD + N P++I DTAG+R + E + V+KS + + + I++LD Sbjct: 259 PGTTRDIIEEYINLDGIPVKITDTAGIRDTEDVVEKI---GVEKSKEKIEEADLIILMLD 315 Query: 295 ATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYIN 354 A+ +++D RI++ + N + V+ LNK D+ K ++ + +KNL I IN Sbjct: 316 ASRYIDEEDSRIINKIKNRKYIVL--LNKMDLKDIK------IQEEILKNLSNI----IN 363 Query: 355 TISGRTGEGLD 365 IS +TG+G+D Sbjct: 364 -ISAKTGQGID 373 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 54/159 (33%), Positives = 85/159 (53%), Gaps = 5/159 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 I IVG PNVGKS+L N L+++ A+V + PG TRD + ++G+ I DTAGI D + Sbjct: 230 IVIVGKPNVGKSSLLNALLRENRAIVTDVPGTTRDIIEEYINLDGIPVKITDTAGIRDTE 289 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + K ++++ I EA LI+ ++D+ I D I + + KN I++ NKMD + Sbjct: 290 DV-VEKIGVEKSKEKIEEADLIILMLDASRYIDEEDSRIIN--KIKNRKYIVLLNKMDLK 346 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 E + I+ ISA+ G L + K+F Sbjct: 347 --DIKIQEEILKNLSNIINISAKTGQGIDILKDEVKKLF 383 >gi|205356679|ref|ZP_03223440.1| putative thiophene and furan oxidation protein [Campylobacter jejuni subsp. jejuni CG8421] gi|205345417|gb|EDZ32059.1| putative thiophene and furan oxidation protein [Campylobacter jejuni subsp. jejuni CG8421] Length = 442 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 47/131 (35%), Positives = 76/131 (58%), Gaps = 3/131 (2%) Query: 196 SVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEI 255 S K + + +IA+VG+PNVGKS+L+N LL Y R + +G TRD++ S+ H + I Sbjct: 207 SKKGLIEGFKIAIVGKPNVGKSSLLNALLSYERAIVSDIAGTTRDTIEESFKLGTHLLRI 266 Query: 256 FDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGH 315 DTAG+R+ + +EQ V S +S+ + + + DA+ +K+D +I D + NT Sbjct: 267 IDTAGIRESKDV---IEQIGVALSKKSLEDADIILAVFDASRVQDKEDEKIFDLLANTDK 323 Query: 316 AVVLALNKWDM 326 + LNK D+ Sbjct: 324 KIFWILNKSDL 334 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 44/149 (29%), Positives = 75/149 (50%), Gaps = 9/149 (6%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + IAIVG PNVGKS+L N L+ + A+V + G TRD + + + I+DTAGI + Sbjct: 215 FKIAIVGKPNVGKSSLLNALLSYERAIVSDIAGTTRDTIEESFKLGTHLLRIIDTAGIRE 274 Query: 63 GKNCSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 K+ + +Q+ ++ ++ +A +IL + D+ D I L + I + NK Sbjct: 275 SKD--VIEQIGVALSKKSLEDADIILAVFDASRVQDKEDEKIFDLLANTDKKIFWILNKS 332 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDL 150 D +N K +++SA+ D+ Sbjct: 333 DLENVFKNTQN------KNFIKLSAQKDI 355 >gi|86152727|ref|ZP_01070932.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni HB93-13] gi|85843612|gb|EAQ60822.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni HB93-13] Length = 442 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 47/131 (35%), Positives = 77/131 (58%), Gaps = 3/131 (2%) Query: 196 SVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEI 255 S K + + +IA+VG+PNVGKS+L+N LL Y R + +G TRD++ S+ H + I Sbjct: 207 SKKGLIEGFKIAIVGKPNVGKSSLLNALLSYERAIVSDIAGTTRDTIEESFKLGTHLLRI 266 Query: 256 FDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGH 315 DTAG+R+ +++EQ V S +S+ + + + DA+ +K+D +I D + NT Sbjct: 267 IDTAGIRESK---DTIEQIGVALSKKSLEDADIILAVFDASRVQDKEDGKIFDLLANTDK 323 Query: 316 AVVLALNKWDM 326 + LNK D+ Sbjct: 324 KIFWILNKSDL 334 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/148 (29%), Positives = 74/148 (50%), Gaps = 7/148 (4%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + IAIVG PNVGKS+L N L+ + A+V + G TRD + + + I+DTAGI + Sbjct: 215 FKIAIVGKPNVGKSSLLNALLSYERAIVSDIAGTTRDTIEESFKLGTHLLRIIDTAGIRE 274 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 K+ +I + ++ ++ +A +IL + D+ D I L + I + NK D Sbjct: 275 SKD-TIEQIGVALSKKSLEDADIILAVFDASRVQDKEDGKIFDLLANTDKKIFWILNKSD 333 Query: 123 TRIAQRNFYEIYSLDFKEIVEISAEHDL 150 +N K +++SA+ D+ Sbjct: 334 LENVFKNTQN------KNFIKLSAQKDI 355 >gi|148926123|ref|ZP_01809809.1| putative thiophene and furan oxidation protein [Campylobacter jejuni subsp. jejuni CG8486] gi|145845602|gb|EDK22694.1| putative thiophene and furan oxidation protein [Campylobacter jejuni subsp. jejuni CG8486] Length = 442 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 47/131 (35%), Positives = 76/131 (58%), Gaps = 3/131 (2%) Query: 196 SVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEI 255 S K + + +IA+VG+PNVGKS+L+N LL Y R + +G TRD++ S+ H + I Sbjct: 207 SKKGLIEGFKIAIVGKPNVGKSSLLNALLSYERAIVSDIAGTTRDTIEESFKLGTHLLRI 266 Query: 256 FDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGH 315 DTAG+R+ + +EQ V S +S+ + + + DA+ +K+D +I D + NT Sbjct: 267 IDTAGIRESKDV---IEQIGVALSKKSLEDADIILAVFDASRVQDKEDEKIFDLLANTDK 323 Query: 316 AVVLALNKWDM 326 + LNK D+ Sbjct: 324 KIFWILNKSDL 334 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 44/149 (29%), Positives = 75/149 (50%), Gaps = 9/149 (6%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + IAIVG PNVGKS+L N L+ + A+V + G TRD + + + I+DTAGI + Sbjct: 215 FKIAIVGKPNVGKSSLLNALLSYERAIVSDIAGTTRDTIEESFKLGTHLLRIIDTAGIRE 274 Query: 63 GKNCSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 K+ + +Q+ ++ ++ +A +IL + D+ D I L + I + NK Sbjct: 275 SKD--VIEQIGVALSKKSLEDADIILAVFDASRVQDKEDEKIFDLLANTDKKIFWILNKS 332 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDL 150 D +N K +++SA+ D+ Sbjct: 333 DLENVFKNTQN------KNFIKLSAQKDI 355 >gi|86150742|ref|ZP_01068958.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni 260.94] gi|315124454|ref|YP_004066458.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85841912|gb|EAQ59158.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni 260.94] gi|315018176|gb|ADT66269.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 442 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 47/131 (35%), Positives = 76/131 (58%), Gaps = 3/131 (2%) Query: 196 SVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEI 255 S K + + +IA+VG+PNVGKS+L+N LL Y R + +G TRD++ S+ H + I Sbjct: 207 SKKGLIEGFKIAIVGKPNVGKSSLLNALLSYERAIVSDIAGTTRDTIEESFKLGTHLLRI 266 Query: 256 FDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGH 315 DTAG+R+ + +EQ V S +S+ + + + DA+ +K+D +I D + NT Sbjct: 267 IDTAGIRESKDV---IEQIGVALSKKSLEDADIILAVFDASRVQDKEDEKIFDLLANTDK 323 Query: 316 AVVLALNKWDM 326 + LNK D+ Sbjct: 324 KIFWILNKSDL 334 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 44/149 (29%), Positives = 75/149 (50%), Gaps = 9/149 (6%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + IAIVG PNVGKS+L N L+ + A+V + G TRD + + + I+DTAGI + Sbjct: 215 FKIAIVGKPNVGKSSLLNALLSYERAIVSDIAGTTRDTIEESFKLGTHLLRIIDTAGIRE 274 Query: 63 GKNCSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 K+ + +Q+ ++ ++ +A +IL + D+ D I L + I + NK Sbjct: 275 SKD--VIEQIGVALSKKSLEDADIILAVFDASRVQDKEDEKIFDLLANTDKKIFWILNKS 332 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDL 150 D +N K +++SA+ D+ Sbjct: 333 DLENVFKNTQN------KNFIKLSAQKDI 355 >gi|225570970|ref|ZP_03779993.1| hypothetical protein CLOHYLEM_07074 [Clostridium hylemonae DSM 15053] gi|225160432|gb|EEG73051.1| hypothetical protein CLOHYLEM_07074 [Clostridium hylemonae DSM 15053] Length = 311 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 57/162 (35%), Positives = 86/162 (53%), Gaps = 7/162 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + ++G PNVGKSTL N L+ +K+A+ N P TR+R+ + VDT GI K Sbjct: 23 VTLIGRPNVGKSTLMNHLIGQKIAITSNKPQTTRNRIQTVLTLQDGQIVFVDTPGIHKAK 82 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N + + M + E +NE ++L+L++ I + I L+K N P+I+V NK+D Sbjct: 83 N-KLGEYMVNIAERTLNEVDVVLWLVEPSTFIGAGERHIAEQLKKVNTPVILVINKVDM- 140 Query: 125 IAQRNFYEIYS-----LDFKEIVEISAEHDLGTSELHSVIFK 161 + + E S DF EIV +SA + T EL SV+ K Sbjct: 141 VKKEEILEAISAYKDIYDFAEIVPVSARNGDNTDELMSVVMK 182 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/188 (25%), Positives = 91/188 (48%), Gaps = 8/188 (4%) Query: 186 KENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSIS 245 K+++ E +K K + ++GRPNVGKSTL+N L+G +T ++ TR+ + Sbjct: 3 KKHVPDEKGERMKKDFKSGFVTLIGRPNVGKSTLMNHLIGQKIAITSNKPQTTRNRIQTV 62 Query: 246 WNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLR 305 ++ I DT G+ K L + V + +++ + + L++ + + Sbjct: 63 LTLQDGQIVFVDTPGIHKAKN---KLGEYMVNIAERTLNEVDVVLWLVEPSTFIGAGERH 119 Query: 306 IVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLD 365 I + + V+L +NK DMV K +L+ + A K++ +I +S R G+ D Sbjct: 120 IAEQLKKVNTPVILVINKVDMVK-KEEILEAI--SAYKDIYDFAEIV--PVSARNGDNTD 174 Query: 366 DLMVSVLE 373 +LM V++ Sbjct: 175 ELMSVVMK 182 >gi|57237784|ref|YP_179032.1| tRNA modification GTPase TrmE [Campylobacter jejuni RM1221] gi|81353660|sp|Q5HUK3|MNME_CAMJR RecName: Full=tRNA modification GTPase mnmE gi|57166588|gb|AAW35367.1| tRNA modification GTPase TrmE [Campylobacter jejuni RM1221] Length = 442 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 47/131 (35%), Positives = 76/131 (58%), Gaps = 3/131 (2%) Query: 196 SVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEI 255 S K + + +IA+VG+PNVGKS+L+N LL Y R + +G TRD++ S+ H + I Sbjct: 207 SKKGLIEGFKIAIVGKPNVGKSSLLNALLSYERAIVSDIAGTTRDTIEESFKLGTHLLRI 266 Query: 256 FDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGH 315 DTAG+R+ + +EQ V S +S+ + + + DA+ +K+D +I D + NT Sbjct: 267 IDTAGIRESKDV---IEQIGVALSKKSLEDADIILAVFDASRVQDKEDEKIFDLLANTDK 323 Query: 316 AVVLALNKWDM 326 + LNK D+ Sbjct: 324 KIFWILNKSDL 334 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 44/149 (29%), Positives = 75/149 (50%), Gaps = 9/149 (6%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + IAIVG PNVGKS+L N L+ + A+V + G TRD + + + I+DTAGI + Sbjct: 215 FKIAIVGKPNVGKSSLLNALLSYERAIVSDIAGTTRDTIEESFKLGTHLLRIIDTAGIRE 274 Query: 63 GKNCSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 K+ + +Q+ ++ ++ +A +IL + D+ D I L + I + NK Sbjct: 275 SKD--VIEQIGVALSKKSLEDADIILAVFDASRVQDKEDEKIFDLLANTDKKIFWILNKS 332 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDL 150 D +N K +++SA+ D+ Sbjct: 333 DLENVFKNTQN------KNFIKLSAQKDI 355 >gi|315058397|gb|ADT72726.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Campylobacter jejuni subsp. jejuni S3] Length = 442 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 47/131 (35%), Positives = 76/131 (58%), Gaps = 3/131 (2%) Query: 196 SVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEI 255 S K + + +IA+VG+PNVGKS+L+N LL Y R + +G TRD++ S+ H + I Sbjct: 207 SKKGLIEGFKIAIVGKPNVGKSSLLNALLSYERAIVSDIAGTTRDTIEESFKLGTHLLRI 266 Query: 256 FDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGH 315 DTAG+R+ + +EQ V S +S+ + + + DA+ +K+D +I D + NT Sbjct: 267 IDTAGIRESKDV---IEQIGVALSKKSLEDADIILAVFDASRVQDKEDEKIFDLLANTDK 323 Query: 316 AVVLALNKWDM 326 + LNK D+ Sbjct: 324 KIFWILNKSDL 334 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 44/149 (29%), Positives = 75/149 (50%), Gaps = 9/149 (6%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + IAIVG PNVGKS+L N L+ + A+V + G TRD + + + I+DTAGI + Sbjct: 215 FKIAIVGKPNVGKSSLLNALLSYERAIVSDIAGTTRDTIEESFKLGTHLLRIIDTAGIRE 274 Query: 63 GKNCSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 K+ + +Q+ ++ ++ +A +IL + D+ D I L + I + NK Sbjct: 275 SKD--VIEQIGVALSKKSLEDADIILAVFDASRVQDKEDEKIFDLLANTDKKIFWILNKS 332 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDL 150 D +N K +++SA+ D+ Sbjct: 333 DLENVFKNTQN------KNFIKLSAQKDI 355 >gi|332655106|ref|ZP_08420847.1| tRNA modification GTPase TrmE [Ruminococcaceae bacterium D16] gi|332515966|gb|EGJ45575.1| tRNA modification GTPase TrmE [Ruminococcaceae bacterium D16] Length = 457 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 53/177 (29%), Positives = 98/177 (55%), Gaps = 15/177 (8%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 + +++ +R A+VGRPN GKS+L+N L+GY+R + G TRD++ P+ + D Sbjct: 216 RRLNQGVRCALVGRPNAGKSSLLNALVGYDRAIVTDIPGTTRDTLEAEVELGGVPLRLID 275 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R S + +E+ V++S Q++ E +VL D+++P ++D ++++ + Sbjct: 276 TAGLRDSS---DPIERLGVERSRQAMEEAELILVLWDSSVPATQEDGELLETALSLA-PT 331 Query: 318 VLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEI 374 +L K D+ S + L + LP + + +S +TGEGL DL +V ++ Sbjct: 332 ILIHTKTDLPSAPVPFLN------LSPLPPVVE-----LSTKTGEGLADLEAAVAQL 377 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 54/172 (31%), Positives = 86/172 (50%), Gaps = 4/172 (2%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 A+VG PN GKS+L N LV A+V + PG TRD L + + GV ++DTAG+ D + Sbjct: 225 ALVGRPNAGKSSLLNALVGYDRAIVTDIPGTTRDTLEAEVELGGVPLRLIDTAGLRDSSD 284 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 I + +++ A+ EA LIL L DS T D + P I++ K D Sbjct: 285 -PIERLGVERSRQAMEEAELILVLWDSSVPATQEDGELLETALSL-APTILIHTKTDLPS 342 Query: 126 AQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 A F + L +VE+S + G ++L + + ++F + + E++ N Sbjct: 343 APVPFLNLSPL--PPVVELSTKTGEGLADLEAAVAQLFPKGSDSAYGELLSN 392 >gi|217077738|ref|YP_002335456.1| tRNA modification GTPase TrmE [Thermosipho africanus TCF52B] gi|217037593|gb|ACJ76115.1| tRNA modification GTPase TrmE [Thermosipho africanus TCF52B] Length = 441 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 72/198 (36%), Positives = 106/198 (53%), Gaps = 21/198 (10%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 +AIVG PN GKSTL N+L+++ A+V + PG TRD + G+ ING+ F IVDTAGI + Sbjct: 213 VMAIVGKPNSGKSTLLNKLLEEDRAIVTDIPGTTRDVIKGEIDINGIHFVIVDTAGIRET 272 Query: 64 KNCSIAKQMNDQTEL-AINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + + + + Q + + +A ++LF++DS G T D I F + K + I V NK D Sbjct: 273 DD--VVESIGIQKSIKELEKADIVLFVLDSTTGFTKEDEYI--FEKVKKLNYIPVWNKCD 328 Query: 123 TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK----IFKQKYPNH-----PLE 173 NF + +FK+ V+ISA L S+I I + +H LE Sbjct: 329 I---GNNFNK----EFKDAVKISALTGESFRSLESMILSKVSDIIESGESSHVITQRQLE 381 Query: 174 MIENNKRNEESPKENITS 191 ++E KRN ES N+ S Sbjct: 382 VLERVKRNVESAIFNLKS 399 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 37/111 (33%), Positives = 64/111 (57%), Gaps = 3/111 (2%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 ++K + +A+VG+PN GKSTL+N+LL +R + G TRD + + I DTA Sbjct: 208 LNKGIVMAIVGKPNSGKSTLLNKLLEEDRAIVTDIPGTTRDVIKGEIDINGIHFVIVDTA 267 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSV 310 G+R+ + ES+ ++KS++ + + + +LD+T F K+D I + V Sbjct: 268 GIRETDDVVESI---GIQKSIKELEKADIVLFVLDSTTGFTKEDEYIFEKV 315 >gi|153952344|ref|YP_001397952.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. doylei 269.97] gi|166200471|sp|A7H372|MNME_CAMJD RecName: Full=tRNA modification GTPase mnmE gi|152939790|gb|ABS44531.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. doylei 269.97] Length = 442 Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 58/185 (31%), Positives = 99/185 (53%), Gaps = 16/185 (8%) Query: 196 SVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEI 255 S K + + +IA++G+PNVGKS+L+N LL Y R + +G TRD++ S+ H + I Sbjct: 207 SKKGLIEGFKIAIIGKPNVGKSSLLNALLSYERAIVSDIAGTTRDTIEESFKLGTHLLRI 266 Query: 256 FDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGH 315 DTAG+R+ +++EQ V S +S+ + + + DA+ +K+D +I + + NT Sbjct: 267 IDTAGIRESK---DTIEQIGVALSKKSLEDADIILAVFDASRVQDKEDEKIFELLANTDK 323 Query: 316 AVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYI------NTISGRTGEGLDDLMV 369 + LNK D+ N+ ++ R K L DI + N ++ EG +MV Sbjct: 324 KIFWILNKSDLE----NVFKNTRNKNFIKLSAQKDIALLKEELQNYLNSFDSEG---IMV 376 Query: 370 SVLEI 374 S L++ Sbjct: 377 SSLDL 381 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 43/149 (28%), Positives = 74/149 (49%), Gaps = 7/149 (4%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + IAI+G PNVGKS+L N L+ + A+V + G TRD + + + I+DTAGI + Sbjct: 215 FKIAIIGKPNVGKSSLLNALLSYERAIVSDIAGTTRDTIEESFKLGTHLLRIIDTAGIRE 274 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 K+ +I + ++ ++ +A +IL + D+ D I L + I + NK D Sbjct: 275 SKD-TIEQIGVALSKKSLEDADIILAVFDASRVQDKEDEKIFELLANTDKKIFWILNKSD 333 Query: 123 TRIAQRNFYEIYSLDFKEIVEISAEHDLG 151 +N K +++SA+ D+ Sbjct: 334 LENVFKNTRN------KNFIKLSAQKDIA 356 >gi|15606987|ref|NP_214369.1| GTP-binding protein Era [Aquifex aeolicus VF5] gi|3913584|sp|O67800|ERA_AQUAE RecName: Full=GTPase Era gi|2984240|gb|AAC07768.1| GTP-binding protein Era [Aquifex aeolicus VF5] Length = 301 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 64/180 (35%), Positives = 93/180 (51%), Gaps = 9/180 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYG-QAIINGVIFNIVDTAGIADG 63 +AIVG PNVGKSTL N L+ K++++ G TR R+ G + I N +DT GI + Sbjct: 6 VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEP 65 Query: 64 KNCSI-AKQMNDQTELAINEAHLILFLIDSKAGITPYDHAI-TSFLRKKNIPIIIVSNKM 121 K + M + + ++ EA +ILF+ID+ G P D I +F++ N P+I+V NK+ Sbjct: 66 KKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKI 125 Query: 122 DTRIAQRNFY----EIYS--LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 D +N EI+ + EIV ISA EL I K + P P +MI Sbjct: 126 DKIGPAKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYLPEGEPLFPEDMI 185 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 53/170 (31%), Positives = 89/170 (52%), Gaps = 6/170 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIF-DTAGMRKP 264 +A+VG+PNVGKSTL+N LLG + ++G TR V N N IF DT G+ +P Sbjct: 6 VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEP 65 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNT-GHAVVLALNK 323 + ++ L V+ + QS+ + + ++DAT + +D I + V++ +NK Sbjct: 66 KK-SDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINK 124 Query: 324 WDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 D + N+L L + K P++ +I IS G LD+L+ ++L+ Sbjct: 125 IDKIGPAKNVLP-LIDEIHKKHPELTEIV--PISALKGANLDELVKTILK 171 >gi|256599907|pdb|3IEV|A Chain A, Crystal Structure Of Era In Complex With Mggnp And The 3' End Of 16s Rrna Length = 308 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 64/180 (35%), Positives = 93/180 (51%), Gaps = 9/180 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYG-QAIINGVIFNIVDTAGIADG 63 +AIVG PNVGKSTL N L+ K++++ G TR R+ G + I N +DT GI + Sbjct: 13 VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEP 72 Query: 64 KNCSI-AKQMNDQTELAINEAHLILFLIDSKAGITPYDHAI-TSFLRKKNIPIIIVSNKM 121 K + M + + ++ EA +ILF+ID+ G P D I +F++ N P+I+V NK+ Sbjct: 73 KKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKI 132 Query: 122 DTRIAQRNFY----EIYS--LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 D +N EI+ + EIV ISA EL I K + P P +MI Sbjct: 133 DKIGPAKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYLPEGEPLFPEDMI 192 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 53/170 (31%), Positives = 89/170 (52%), Gaps = 6/170 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIF-DTAGMRKP 264 +A+VG+PNVGKSTL+N LLG + ++G TR V N N IF DT G+ +P Sbjct: 13 VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEP 72 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNT-GHAVVLALNK 323 + ++ L V+ + QS+ + + ++DAT + +D I + V++ +NK Sbjct: 73 KK-SDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINK 131 Query: 324 WDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 D + N+L L + K P++ +I IS G LD+L+ ++L+ Sbjct: 132 IDKIGPAKNVLP-LIDEIHKKHPELTEIV--PISALKGANLDELVKTILK 178 >gi|319940690|ref|ZP_08015032.1| tRNA modification GTPase mnmE [Sutterella wadsworthensis 3_1_45B] gi|319805841|gb|EFW02608.1| tRNA modification GTPase mnmE [Sutterella wadsworthensis 3_1_45B] Length = 462 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 59/162 (36%), Positives = 96/162 (59%), Gaps = 10/162 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+A+VGAPNVGKS+L N L ++A+V G TRDR+ +G+ IVDTAG+ + Sbjct: 226 TVALVGAPNVGKSSLLNALAGDEVAIVTEIAGTTRDRIEHWTAFDGIPLRIVDTAGMRE- 284 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLR---KKNIPIIIVSNK 120 N + ++ ++T AI+EA ++L L+D+ +G P D A+ + +R + P++IV+NK Sbjct: 285 TNDIVEQKGIERTLKAISEADIVLHLVDA-SGRIPDDEALLTRVREYARPGTPLLIVANK 343 Query: 121 MDT-RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 +D+ + +RN Y D IV ISA+ G L + + + Sbjct: 344 IDSISLERRNEY----CDDASIVPISAKTHEGLEALKARVLE 381 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 61/215 (28%), Positives = 106/215 (49%), Gaps = 25/215 (11%) Query: 167 YPNHPLEMIENNK-----RNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLIN 221 +P LE ++ + R + E + + + V ++ + +A+VG PNVGKS+L+N Sbjct: 184 FPEEDLEDLKEKQIFTRAREAQIKLEGLLANARRGVV-LADGITVALVGAPNVGKSSLLN 242 Query: 222 RLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQ 281 L G + +G TRD + + P+ I DTAGMR+ + I +EQK ++++++ Sbjct: 243 ALAGDEVAIVTEIAGTTRDRIEHWTAFDGIPLRIVDTAGMRETNDI---VEQKGIERTLK 299 Query: 282 SVRTCETTIVLLDAT--IPFEKQDLRIVDSVFNTGHAVVLALNKWDMVS-DKLNLLQDLR 338 ++ + + L+DA+ IP ++ L V G +++ NK D +S ++ N D Sbjct: 300 AISEADIVLHLVDASGRIPDDEALLTRVREYARPGTPLLIVANKIDSISLERRNEYCD-- 357 Query: 339 TKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 D I IS +T EGL+ L VLE Sbjct: 358 -----------DASIVPISAKTHEGLEALKARVLE 381 >gi|163782078|ref|ZP_02177077.1| GTP-binding protein Era [Hydrogenivirga sp. 128-5-R1-1] gi|159882610|gb|EDP76115.1| GTP-binding protein Era [Hydrogenivirga sp. 128-5-R1-1] Length = 304 Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 63/184 (34%), Positives = 97/184 (52%), Gaps = 15/184 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIING---VIFNIVDTAGIA 61 + IVG PNVGKSTL N ++ +K+++V PG TR R+ G I+G +IF +DT GI Sbjct: 6 VTIVGKPNVGKSTLLNNILGRKVSIVTPKPGTTRIRVLGVKNISGEAQIIF--LDTPGIY 63 Query: 62 DGKNCSI-AKQMNDQTELAINEAHLILFLIDSKAGITPYDHAI-TSFLR--KKNIPIIIV 117 K + K M ++ +A +ILF+ID++ G D + S+++ + P+I+V Sbjct: 64 QPKGADVLGKSMLQMARQSLEDADVILFMIDAEEGWRKRDEEVFQSYVKPYAEQKPVILV 123 Query: 118 SNKMDTRIAQRNFY----EIYSL--DFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHP 171 NK+D A +N EI+ +FKEIV SA EL + K + P P Sbjct: 124 VNKIDKLGAAKNVLPLIEEIHKKHPEFKEIVPTSALKGANLEELEKTLLKYLPEGEPLFP 183 Query: 172 LEMI 175 +M+ Sbjct: 184 EDML 187 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 39/133 (29%), Positives = 67/133 (50%), Gaps = 5/133 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIF-DTAGMRKP 264 + +VG+PNVGKSTL+N +LG + + G TR V N IF DT G+ +P Sbjct: 6 VTIVGKPNVGKSTLLNNILGRKVSIVTPKPGTTRIRVLGVKNISGEAQIIFLDTPGIYQP 65 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSV---FNTGHAVVLAL 321 + + L + ++ + QS+ + + ++DA + K+D + S + V+L + Sbjct: 66 -KGADVLGKSMLQMARQSLEDADVILFMIDAEEGWRKRDEEVFQSYVKPYAEQKPVILVV 124 Query: 322 NKWDMVSDKLNLL 334 NK D + N+L Sbjct: 125 NKIDKLGAAKNVL 137 >gi|210135618|ref|YP_002302057.1| tRNA modification GTPase TrmE [Helicobacter pylori P12] gi|210133586|gb|ACJ08577.1| thiophene/furan oxidation protein [Helicobacter pylori P12] Length = 461 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 40/122 (32%), Positives = 73/122 (59%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +++VG+PN GKS+L+N +L R L G TRD++ K H + + DTAG+R+ Sbjct: 227 LSIVGKPNAGKSSLLNAMLLEERALVSDIKGTTRDTIEEVIELKGHKVRLIDTAGIRES- 285 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 T+ +E+ ++KS++S+ C+ + + D + P EK+D ++D++ ++ LNK D Sbjct: 286 --TDKIERLGIEKSLKSLENCDIILGVFDLSKPLEKEDFNLIDTLNRAKKPCIVVLNKND 343 Query: 326 MV 327 +V Sbjct: 344 LV 345 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 62/120 (51%), Gaps = 1/120 (0%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + ++IVG PN GKS+L N ++ ++ A+V + G TRD + + G ++DTAGI + Sbjct: 225 HALSIVGKPNAGKSSLLNAMLLEERALVSDIKGTTRDTIEEVIELKGHKVRLIDTAGIRE 284 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + I + +++ ++ +IL + D + D + L + P I+V NK D Sbjct: 285 STD-KIERLGIEKSLKSLENCDIILGVFDLSKPLEKEDFNLIDTLNRAKKPCIVVLNKND 343 >gi|261840127|gb|ACX99892.1| tRNA modification GTPase TrmE [Helicobacter pylori 52] Length = 450 Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 39/122 (31%), Positives = 74/122 (60%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +++VG+PN GKS+L+N +L R L G TRD++ + H + + DTAG+R+ Sbjct: 216 LSIVGKPNAGKSSLLNAMLLEERALVSDIKGTTRDTIEEVIELQGHKVRLIDTAGIRES- 274 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 T+ +E+ ++KS++S+ C+ + + D + P E++D ++D++ T ++ LNK D Sbjct: 275 --TDKIERLGIEKSLKSLENCDIVLGVFDLSKPLEQEDFNLIDTLNRTKKPCIVVLNKND 332 Query: 326 MV 327 +V Sbjct: 333 LV 334 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 33/120 (27%), Positives = 62/120 (51%), Gaps = 1/120 (0%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + ++IVG PN GKS+L N ++ ++ A+V + G TRD + + G ++DTAGI + Sbjct: 214 HALSIVGKPNAGKSSLLNAMLLEERALVSDIKGTTRDTIEEVIELQGHKVRLIDTAGIRE 273 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + I + +++ ++ ++L + D + D + L + P I+V NK D Sbjct: 274 STD-KIERLGIEKSLKSLENCDIVLGVFDLSKPLEQEDFNLIDTLNRTKKPCIVVLNKND 332 >gi|208435318|ref|YP_002266984.1| putative thiophene/furanoxidation protein [Helicobacter pylori G27] gi|208433247|gb|ACI28118.1| putative thiophene/furanoxidation protein [Helicobacter pylori G27] Length = 404 Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 59/210 (28%), Positives = 106/210 (50%), Gaps = 15/210 (7%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +++VG+PN GKS+L+N +L R L G TRD++ + H + + DTAG+R+ + Sbjct: 170 LSIVGKPNAGKSSLLNAMLLEERALVSDIKGTTRDTIEEVIELQGHKVRLIDTAGIRESA 229 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + +E+ ++KS++S+ C+ + + D + P EK+D I+D++ ++ LNK D Sbjct: 230 ---DKIERLGIEKSLKSLENCDIILGVFDLSKPLEKEDFTIIDALNRAKKPCIVVLNKND 286 Query: 326 MVSDKLNLLQDLRTKAIKNLPQI--GDIYINTISGRTGEGLDDLMVSVLEINKLWKTRIT 383 + L + +K+ +I + NT++ R L DL + E T+ Sbjct: 287 LAP-------KLELEVLKSYLKIPYALLETNTLNSRA--CLKDLSQKISEFFPKLDTQ-N 336 Query: 384 TSYLNSWLQKTQLQNPPPTIFNRYNRLKYI 413 L S QKT L+N + N N L+ + Sbjct: 337 KLLLTSLAQKTALENAIIELQNAKNHLETL 366 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 62/120 (51%), Gaps = 1/120 (0%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + ++IVG PN GKS+L N ++ ++ A+V + G TRD + + G ++DTAGI + Sbjct: 168 HALSIVGKPNAGKSSLLNAMLLEERALVSDIKGTTRDTIEEVIELQGHKVRLIDTAGIRE 227 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + I + +++ ++ +IL + D + D I L + P I+V NK D Sbjct: 228 SAD-KIERLGIEKSLKSLENCDIILGVFDLSKPLEKEDFTIIDALNRAKKPCIVVLNKND 286 >gi|254779963|ref|YP_003058070.1| tRNA modification GTPase TrmE [Helicobacter pylori B38] gi|254001876|emb|CAX30126.1| tRNA modification GTPase [Helicobacter pylori B38] Length = 450 Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 40/122 (32%), Positives = 72/122 (59%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +++VG+PN GKS+L+N +L R L G TRD++ K H + + DTAG+R+ Sbjct: 216 LSIVGKPNAGKSSLLNAMLLEERALVSDIKGTTRDTIEEVIELKGHKVRLIDTAGIRES- 274 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 T+ +E+ ++KS++S+ C+ + + D + P EK+D I+D++ ++ LNK D Sbjct: 275 --TDKIERLGIEKSLKSLENCDIILGVFDLSKPLEKEDFTIIDALNRAKKPCIVVLNKND 332 Query: 326 MV 327 + Sbjct: 333 LA 334 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 62/120 (51%), Gaps = 1/120 (0%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + ++IVG PN GKS+L N ++ ++ A+V + G TRD + + G ++DTAGI + Sbjct: 214 HALSIVGKPNAGKSSLLNAMLLEERALVSDIKGTTRDTIEEVIELKGHKVRLIDTAGIRE 273 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + I + +++ ++ +IL + D + D I L + P I+V NK D Sbjct: 274 STD-KIERLGIEKSLKSLENCDIILGVFDLSKPLEKEDFTIIDALNRAKKPCIVVLNKND 332 >gi|223040362|ref|ZP_03610637.1| tRNA modification GTPase TrmE [Campylobacter rectus RM3267] gi|222878320|gb|EEF13426.1| tRNA modification GTPase TrmE [Campylobacter rectus RM3267] Length = 439 Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 42/131 (32%), Positives = 78/131 (59%), Gaps = 3/131 (2%) Query: 196 SVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEI 255 S K + + +IA+VG+PNVGKS+++N LL ++R + ++G TRDS+ + H + I Sbjct: 206 SRKGLLEGFKIAIVGKPNVGKSSILNSLLSFDRAIISDEAGTTRDSIEEALKIGTHLVRI 265 Query: 256 FDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGH 315 DTAG+RK + +EQ + S++++ + + + DA+ ++QD I++ + N+ Sbjct: 266 IDTAGIRKNAG---KIEQIGISYSLRAIEEADVILAVFDASQEADEQDSEILELLKNSQK 322 Query: 316 AVVLALNKWDM 326 + LNK D+ Sbjct: 323 KIFYVLNKCDL 333 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 44/121 (36%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + IAIVG PNVGKS++ N L+ A++ + G TRD + I + I+DTAGI Sbjct: 214 FKIAIVGKPNVGKSSILNSLLSFDRAIISDEAGTTRDSIEEALKIGTHLVRIIDTAGIR- 272 Query: 63 GKNCSIAKQMNDQTEL-AINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 KN +Q+ L AI EA +IL + D+ D I L+ I V NK Sbjct: 273 -KNAGKIEQIGISYSLRAIEEADVILAVFDASQEADEQDSEILELLKNSQKKIFYVLNKC 331 Query: 122 D 122 D Sbjct: 332 D 332 >gi|70946047|ref|XP_742778.1| hypothetical protein [Plasmodium chabaudi chabaudi] gi|56521948|emb|CAH81720.1| hypothetical protein PC000779.04.0 [Plasmodium chabaudi chabaudi] Length = 139 Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 45/107 (42%), Positives = 72/107 (67%), Gaps = 4/107 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKK--KMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 I+I+G PNVGKST+FNRL +K + ++V + P TRD+ YG++ +G F +VDT G+ Sbjct: 29 ISIIGRPNVGKSTIFNRLTRKFQEGSIVLDKPS-TRDKFYGKSEWDGYRFEVVDTGGLL- 86 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRK 109 ++ + +K++ DQ LA+ E+ ++LF++D G+ P D I FLRK Sbjct: 87 FEDENFSKEIRDQILLALEESSVVLFVVDGINGVHPIDLEICRFLRK 133 Score = 43.1 bits (100), Expect = 0.097, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 6/62 (9%) Query: 203 PLRIAVVGRPNVGKSTLINRLLGYNRLLTGS---QSGITRDSVSISWNWKNHPIEIFDTA 259 PL I+++GRPNVGKST+ NRL + GS TRD W + E+ DT Sbjct: 27 PL-ISIIGRPNVGKSTIFNRLT--RKFQEGSIVLDKPSTRDKFYGKSEWDGYRFEVVDTG 83 Query: 260 GM 261 G+ Sbjct: 84 GL 85 >gi|295697832|ref|YP_003591070.1| tRNA modification GTPase TrmE [Bacillus tusciae DSM 2912] gi|295413434|gb|ADG07926.1| tRNA modification GTPase TrmE [Bacillus tusciae DSM 2912] Length = 461 Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 67/223 (30%), Positives = 114/223 (51%), Gaps = 23/223 (10%) Query: 154 ELHSVIFKIFKQ-----KYPNHPLE--MIENNKRNEESPKENITSEGKSSV--KNISKPL 204 ++ ++ + Q YP H +E IE + + +E I SS + + + + Sbjct: 165 QMREILLDVMAQIEVTIDYPEHDVEDVTIEQIREAVDQVREQIDELLASSRVGRLVREGV 224 Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP 264 R A+VGRPNVGKS+L+N L G R + + G TRD V + + +I DTAG+R Sbjct: 225 RTAIVGRPNVGKSSLLNALAGRERAIVTAIPGTTRDVVDEWIHVRGVAFQILDTAGIRTT 284 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 + +E+ V++S++ V + + +LD + P EK+DL ++D + + VV +NK Sbjct: 285 E---DEVERIGVERSLKWVAEADLVLCVLDGSSPLEKEDLELLDRIKDRPFLVV--VNKI 339 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDL 367 D+ L D R ++ LPQ + +S RTG+G+ +L Sbjct: 340 DLPG---RLAGDGR---LEKLPQ---HRMVRVSARTGDGVQEL 373 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 84/161 (52%), Gaps = 9/161 (5%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AIVG PNVGKS+L N L ++ A+V PG TRD + + GV F I+DTAGI ++ Sbjct: 227 AIVGRPNVGKSSLLNALAGRERAIVTAIPGTTRDVVDEWIHVRGVAFQILDTAGIRTTED 286 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFL-RKKNIPIIIVSNKMD-- 122 + + +++ + EA L+L ++D G +P + L R K+ P ++V NK+D Sbjct: 287 -EVERIGVERSLKWVAEADLVLCVLD---GSSPLEKEDLELLDRIKDRPFLVVVNKIDLP 342 Query: 123 TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 R+A E L +V +SA G EL + ++ Sbjct: 343 GRLAGDGRLE--KLPQHRMVRVSARTGDGVQELADRMAQVV 381 >gi|153815591|ref|ZP_01968259.1| hypothetical protein RUMTOR_01827 [Ruminococcus torques ATCC 27756] gi|145847022|gb|EDK23940.1| hypothetical protein RUMTOR_01827 [Ruminococcus torques ATCC 27756] Length = 298 Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 60/165 (36%), Positives = 90/165 (54%), Gaps = 13/165 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAII----NGVIFNIVDTAGI 60 + ++G PNVGKSTL N L+ +K+A+ N P TR+R+ Q ++ ++F VDT GI Sbjct: 10 VTLIGRPNVGKSTLMNHLIGQKIAITSNKPQTTRNRI--QTVLTTEEGQIVF--VDTPGI 65 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 KN + + M + E ++NE ++L+L++ A I D I L+K P+I+V NK Sbjct: 66 HKAKN-KLGEYMVNIAERSLNEVDVVLWLVEPSAFIGAGDRHIIEQLKKVKTPVILVINK 124 Query: 121 MDTRIAQR--NFYEIY--SLDFKEIVEISAEHDLGTSELHSVIFK 161 +D + F + Y DF EIV +SA T EL VI K Sbjct: 125 IDMVKKEEILTFIDAYRKEYDFAEIVPVSARSGDNTDELIKVILK 169 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 43/170 (25%), Positives = 81/170 (47%), Gaps = 12/170 (7%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 + ++GRPNVGKSTL+N L+G +T ++ TR+ + + I DT G+ K Sbjct: 10 VTLIGRPNVGKSTLMNHLIGQKIAITSNKPQTTRNRIQTVLTTEEGQIVFVDTPGIHKAK 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + V + +S+ + + L++ + D I++ + V+L +NK D Sbjct: 70 N---KLGEYMVNIAERSLNEVDVVLWLVEPSAFIGAGDRHIIEQLKKVKTPVILVINKID 126 Query: 326 MVSDK--LNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 MV + L + R + + + I +S R+G+ D+L+ +L+ Sbjct: 127 MVKKEEILTFIDAYRKEY--DFAE-----IVPVSARSGDNTDELIKVILK 169 >gi|121612630|ref|YP_001000638.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni 81-176] gi|167005565|ref|ZP_02271323.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni 81-176] gi|166200472|sp|A1VZU7|MNME_CAMJJ RecName: Full=tRNA modification GTPase mnmE gi|87248887|gb|EAQ71850.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni 81-176] Length = 442 Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 46/131 (35%), Positives = 76/131 (58%), Gaps = 3/131 (2%) Query: 196 SVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEI 255 S K + + +IA+VG+PNVGKS+L+N LL Y R + +G TRD++ ++ H + I Sbjct: 207 SKKGLIEGFKIAIVGKPNVGKSSLLNALLSYERAIVSDIAGTTRDTIEENFKLGTHLLRI 266 Query: 256 FDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGH 315 DTAG+R+ + +EQ V S +S+ + + + DA+ +K+D +I D + NT Sbjct: 267 IDTAGIRESKDV---IEQIGVALSKKSLEDADIILAVFDASRVQDKEDEKIFDLLANTDK 323 Query: 316 AVVLALNKWDM 326 + LNK D+ Sbjct: 324 KIFWILNKSDL 334 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 44/149 (29%), Positives = 75/149 (50%), Gaps = 9/149 (6%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + IAIVG PNVGKS+L N L+ + A+V + G TRD + + + I+DTAGI + Sbjct: 215 FKIAIVGKPNVGKSSLLNALLSYERAIVSDIAGTTRDTIEENFKLGTHLLRIIDTAGIRE 274 Query: 63 GKNCSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 K+ + +Q+ ++ ++ +A +IL + D+ D I L + I + NK Sbjct: 275 SKD--VIEQIGVALSKKSLEDADIILAVFDASRVQDKEDEKIFDLLANTDKKIFWILNKS 332 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDL 150 D +N K +++SA+ D+ Sbjct: 333 DLENVFKNTQN------KNFIKLSAQKDI 355 >gi|317179628|dbj|BAJ57416.1| tRNA modification GTPase TrmE [Helicobacter pylori F30] Length = 450 Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 56/208 (26%), Positives = 104/208 (50%), Gaps = 11/208 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +++VG+PN GKS+L+N +L R L G TRD++ + H + + DTAG+R+ Sbjct: 216 LSIVGKPNAGKSSLLNAMLLEERALVSDIKGTTRDTIEEVIELQGHKVRLIDTAGIRES- 274 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 T+ +E+ ++KS++S+ +C+ + + D + P EK+D ++D++ ++ LNK D Sbjct: 275 --TDKIERLGIEKSLKSLESCDIVLGVFDLSKPLEKEDFNLIDTLNRAKKPCIVVLNKND 332 Query: 326 MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTS 385 + L + +K+ +I + T + + L DL + T+ Sbjct: 333 LAP-------KLELETLKSYLKIPHSLLETNTLNSKACLKDLSQKISAFFPKLDTQ-NKL 384 Query: 386 YLNSWLQKTQLQNPPPTIFNRYNRLKYI 413 L S QKT L+N + N N L+ + Sbjct: 385 LLTSLAQKTALENAIFELQNAKNHLETL 412 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 33/120 (27%), Positives = 62/120 (51%), Gaps = 1/120 (0%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + ++IVG PN GKS+L N ++ ++ A+V + G TRD + + G ++DTAGI + Sbjct: 214 HALSIVGKPNAGKSSLLNAMLLEERALVSDIKGTTRDTIEEVIELQGHKVRLIDTAGIRE 273 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + I + +++ ++ ++L + D + D + L + P I+V NK D Sbjct: 274 STD-KIERLGIEKSLKSLESCDIVLGVFDLSKPLEKEDFNLIDTLNRAKKPCIVVLNKND 332 >gi|86150688|ref|ZP_01068909.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni CF93-6] gi|88596778|ref|ZP_01100015.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni 84-25] gi|218562575|ref|YP_002344354.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|14195292|sp|Q9PNX9|MNME_CAMJE RecName: Full=tRNA modification GTPase mnmE gi|85838869|gb|EAQ56137.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni CF93-6] gi|88191619|gb|EAQ95591.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni 84-25] gi|112360281|emb|CAL35076.1| putative tRNA modification GTPase [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|284926189|gb|ADC28541.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni IA3902] gi|315927915|gb|EFV07238.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315928514|gb|EFV07818.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni 305] Length = 442 Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 46/131 (35%), Positives = 76/131 (58%), Gaps = 3/131 (2%) Query: 196 SVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEI 255 S K + + +IA+VG+PNVGKS+L+N LL Y R + +G TRD++ ++ H + I Sbjct: 207 SKKGLIEGFKIAIVGKPNVGKSSLLNALLSYERAIVSDIAGTTRDTIEENFKLGTHLLRI 266 Query: 256 FDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGH 315 DTAG+R+ + +EQ V S +S+ + + + DA+ +K+D +I D + NT Sbjct: 267 IDTAGIRESKDV---IEQIGVALSKKSLEDADIILAVFDASRVQDKEDEKIFDLLANTDK 323 Query: 316 AVVLALNKWDM 326 + LNK D+ Sbjct: 324 KIFWILNKSDL 334 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 44/149 (29%), Positives = 75/149 (50%), Gaps = 9/149 (6%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + IAIVG PNVGKS+L N L+ + A+V + G TRD + + + I+DTAGI + Sbjct: 215 FKIAIVGKPNVGKSSLLNALLSYERAIVSDIAGTTRDTIEENFKLGTHLLRIIDTAGIRE 274 Query: 63 GKNCSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 K+ + +Q+ ++ ++ +A +IL + D+ D I L + I + NK Sbjct: 275 SKD--VIEQIGVALSKKSLEDADIILAVFDASRVQDKEDEKIFDLLANTDKKIFWILNKS 332 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDL 150 D +N K +++SA+ D+ Sbjct: 333 DLENVFKNTQN------KNFIKLSAQKDI 355 >gi|291520563|emb|CBK75784.1| GTP-binding protein Era [Butyrivibrio fibrisolvens 16/4] Length = 302 Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 85/164 (51%), Gaps = 10/164 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRL---YGQAIINGVIFNIVDTAGIA 61 + IVG PNVGKSTL N ++ +K+A+ N P TR+R+ Y + ++F +DT G+ Sbjct: 9 VTIVGRPNVGKSTLMNHIIGQKIAITSNKPQTTRNRIQTVYTDENVGQIVF--LDTPGMH 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 KN + + M + IN+ LIL+LI+ + D I L P+I+V NK+ Sbjct: 67 QAKN-KLGEYMMSAAKSTINDVDLILWLIEPDTKVGAGDKKIAELLATAEAPVILVINKI 125 Query: 122 DTRIAQRNFYEIYSL----DFKEIVEISAEHDLGTSELHSVIFK 161 D + I + DF E+V +SA H G +L + IFK Sbjct: 126 DMADGAKVGETIQAFKDLCDFIEVVPVSALHGEGCDDLLATIFK 169 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/169 (26%), Positives = 83/169 (49%), Gaps = 9/169 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKN-HPIEIFDTAGMRKP 264 + +VGRPNVGKSTL+N ++G +T ++ TR+ + + +N I DT GM + Sbjct: 9 VTIVGRPNVGKSTLMNHIIGQKIAITSNKPQTTRNRIQTVYTDENVGQIVFLDTPGMHQA 68 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 L + + + ++ + + L++ D +I + + V+L +NK Sbjct: 69 KN---KLGEYMMSAAKSTINDVDLILWLIEPDTKVGAGDKKIAELLATAEAPVILVINKI 125 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 DM +D + + ++ A K+L I + +S GEG DDL+ ++ + Sbjct: 126 DM-ADGAKVGETIQ--AFKDLCDF--IEVVPVSALHGEGCDDLLATIFK 169 >gi|284929261|ref|YP_003421783.1| tRNA modification GTPase trmE [cyanobacterium UCYN-A] gi|284809705|gb|ADB95402.1| tRNA modification GTPase trmE [cyanobacterium UCYN-A] Length = 457 Score = 86.7 bits (213), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 58/162 (35%), Positives = 88/162 (54%), Gaps = 6/162 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAI+G PNVGKS+L N + A+V + PG TRD + II + ++DTAGI Sbjct: 225 IAILGRPNVGKSSLLNSWSRSNKAIVTDLPGTTRDIVESNLIIKNIPIKVLDTAGIRHTD 284 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N I K +T LA N+A LIL ID++ G T + I + + K++PII++ NK+D Sbjct: 285 N-QIEKIGVQRTHLAANQADLILLTIDAQIGWTEEETEI--YKKIKHLPIILIVNKIDLN 341 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQK 166 + I + +E+++ISA +LG + I +K Sbjct: 342 VPD---LSIIPSEIQEVIKISAIQNLGIDSIEEAILNFIYKK 380 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 81/147 (55%), Gaps = 10/147 (6%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 L+IA++GRPNVGKS+L+N N+ + G TRD V + KN PI++ DTAG+R Sbjct: 223 LKIAILGRPNVGKSSLLNSWSRSNKAIVTDLPGTTRDIVESNLIIKNIPIKVLDTAGIRH 282 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 +E+ V+++ + + ++ +DA I + +++ I + + ++L +NK Sbjct: 283 TDN---QIEKIGVQRTHLAANQADLILLTIDAQIGWTEEETEIYKKIKHL--PIILIVNK 337 Query: 324 WDMVSDKLNLL-----QDLRTKAIKNL 345 D+ L+++ + ++ AI+NL Sbjct: 338 IDLNVPDLSIIPSEIQEVIKISAIQNL 364 >gi|153953550|ref|YP_001394315.1| GTP-binding protein Era [Clostridium kluyveri DSM 555] gi|219854172|ref|YP_002471294.1| hypothetical protein CKR_0829 [Clostridium kluyveri NBRC 12016] gi|189037262|sp|A5N6N6|ERA_CLOK5 RecName: Full=GTPase Era gi|254783294|sp|B9E055|ERA_CLOK1 RecName: Full=GTPase Era gi|146346431|gb|EDK32967.1| Predicted GTP-binding protein [Clostridium kluyveri DSM 555] gi|219567896|dbj|BAH05880.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 293 Score = 86.7 bits (213), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 63/184 (34%), Positives = 98/184 (53%), Gaps = 13/184 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNI--VDTAGIAD 62 I I+G PNVGKSTL N ++ +K+++V P TR+ + Q I+ F + VDT GI Sbjct: 7 ITIIGRPNVGKSTLLNSIMGEKLSIVSCKPQTTRNSI--QTILTRDDFQLIFVDTPGIHK 64 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 K+ + M E ++ + LILFLI + D I L+K+NIP+ +V NK+D Sbjct: 65 PKH-KLGNYMVKVAESSVKDVDLILFLITPDVEVGKGDRYILEQLKKENIPVFLVVNKID 123 Query: 123 ----TRIAQ--RNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIE 176 ++AQ +N+ EI+ DF EI+ ISA EL ++ K + +P +MI Sbjct: 124 ENPQEKVAQTLKNYSEIF--DFAEIIPISALKQKNVKELVELMVKYMPEGPKYYPDDMIT 181 Query: 177 NNKR 180 + + Sbjct: 182 DKQE 185 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 78/171 (45%), Gaps = 13/171 (7%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 I ++GRPNVGKSTL+N ++G + + TR+S+ + + DT G+ KP Sbjct: 7 ITIIGRPNVGKSTLLNSIMGEKLSIVSCKPQTTRNSIQTILTRDDFQLIFVDTPGIHKPK 66 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L VK + SV+ + + L+ + K D I++ + V L +NK D Sbjct: 67 H---KLGNYMVKVAESSVKDVDLILFLITPDVEVGKGDRYILEQLKKENIPVFLVVNKID 123 Query: 326 MVSDKLNLLQDLRTKAIKNLPQIGD----IYINTISGRTGEGLDDLMVSVL 372 Q+ + +KN +I D I I+ + + + L +LMV + Sbjct: 124 ENP------QEKVAQTLKNYSEIFDFAEIIPISALKQKNVKELVELMVKYM 168 >gi|289422583|ref|ZP_06424426.1| tRNA modification GTPase TrmE [Peptostreptococcus anaerobius 653-L] gi|289157155|gb|EFD05777.1| tRNA modification GTPase TrmE [Peptostreptococcus anaerobius 653-L] Length = 459 Score = 86.7 bits (213), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 57/166 (34%), Positives = 95/166 (57%), Gaps = 9/166 (5%) Query: 167 YPNHPLEMI---ENNKRNEESPKENITS-EGKSSVKNISKPLRIAVVGRPNVGKSTLINR 222 YP +E I E + + KE + E + K + + L+ A++G+PNVGKS+L+N Sbjct: 181 YPEEDIEFITYKELTDKTSQIQKEVVKMYETSDTGKILREGLKTAILGKPNVGKSSLMNW 240 Query: 223 LLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQS 282 +LG NR + +G TRD + N K P++I DTAG+R+ I E + V+KS Sbjct: 241 ILGENRAIVTEIAGTTRDVIEEFVNIKGIPLKIVDTAGIRETDDIVEKI---GVEKSRDH 297 Query: 283 VRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVS 328 +++ + +V+LD++ E+ DL I+D++ N +VL +NK D+ S Sbjct: 298 MKSSDLVLVVLDSSRELEEDDLEILDAI-NPKKTLVL-INKIDLES 341 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 48/178 (26%), Positives = 86/178 (48%), Gaps = 4/178 (2%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N ++ + A+V G TRD + I G+ IVDTAGI + + Sbjct: 225 AILGKPNVGKSSLMNWILGENRAIVTEIAGTTRDVIEEFVNIKGIPLKIVDTAGIRETDD 284 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 + K +++ + + L+L ++DS + D I + K ++I +++R+ Sbjct: 285 I-VEKIGVEKSRDHMKSSDLVLVVLDSSRELEEDDLEILDAINPKKTLVLINKIDLESRL 343 Query: 126 AQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVI-FKIFKQKYPNHPLEMIENNKRNE 182 E + + I+ ISA + G +H I +++ + N MI N + + Sbjct: 344 DMDKVKEYIA--EENIIHISAMENKGLESIHDKIETMVYEGRVSNKGDVMITNTRHKD 399 >gi|308183548|ref|YP_003927675.1| tRNA modification GTPase TrmE [Helicobacter pylori PeCan4] gi|308065733|gb|ADO07625.1| tRNA modification GTPase TrmE [Helicobacter pylori PeCan4] Length = 450 Score = 86.7 bits (213), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 57/208 (27%), Positives = 104/208 (50%), Gaps = 11/208 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +++VG+PN GKS+L+N +L R L G TRD++ K H + + DTAG+R+ + Sbjct: 216 LSIVGKPNAGKSSLLNAMLLEERALVSDIKGTTRDTIEEVIELKGHKVRLIDTAGIRESA 275 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + +E+ ++KS++S+ C+ + + D + P EK+D ++D++ ++ LNK D Sbjct: 276 ---DRIERLGIEKSLKSLENCDIILGVFDLSKPLEKEDFNLMDTLNRAKKPCIVVLNKND 332 Query: 326 MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTS 385 + L + +K+ +I + T + + L DL + E T+ Sbjct: 333 LAP-------KLELEILKSYLKIPYTLLETNTLNSKACLKDLSQKISEFFPKLDTQ-NKL 384 Query: 386 YLNSWLQKTQLQNPPPTIFNRYNRLKYI 413 L S QKT L+N + N N L+ + Sbjct: 385 LLTSIAQKTALENAITELQNAKNHLETL 412 Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 62/120 (51%), Gaps = 1/120 (0%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + ++IVG PN GKS+L N ++ ++ A+V + G TRD + + G ++DTAGI + Sbjct: 214 HALSIVGKPNAGKSSLLNAMLLEERALVSDIKGTTRDTIEEVIELKGHKVRLIDTAGIRE 273 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + I + +++ ++ +IL + D + D + L + P I+V NK D Sbjct: 274 SAD-RIERLGIEKSLKSLENCDIILGVFDLSKPLEKEDFNLMDTLNRAKKPCIVVLNKND 332 >gi|210624042|ref|ZP_03294159.1| hypothetical protein CLOHIR_02111 [Clostridium hiranonis DSM 13275] gi|210153249|gb|EEA84255.1| hypothetical protein CLOHIR_02111 [Clostridium hiranonis DSM 13275] Length = 462 Score = 86.7 bits (213), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 87/164 (53%), Gaps = 9/164 (5%) Query: 167 YPNHPLEMIENNKRNEESPKENIT----SEGKSSVKNISKPLRIAVVGRPNVGKSTLINR 222 YP +E I E++ + N E S K + L+ +VG+PNVGKS+L+N Sbjct: 184 YPEEDIEFIAYTTLEEKTRELNKDIKKLYETSESGKIFREGLKTVIVGKPNVGKSSLLNS 243 Query: 223 LLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQS 282 +LG NR + G TRD + N K P++I DTAG+R+ + E + V+KSM S Sbjct: 244 ILGENRAIVTDIPGTTRDVIEEFVNIKGIPLKIVDTAGIRETDDVVEKI---GVEKSMAS 300 Query: 283 VRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 T + I+++D++ ++D I++ V G +L LNK D+ Sbjct: 301 FDTADLIIMVVDSSSELSEEDREILEKV--QGKETILLLNKTDL 342 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 48/162 (29%), Positives = 82/162 (50%), Gaps = 21/162 (12%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PNVGKS+L N ++ + A+V + PG TRD + I G+ IVDTAGI + + Sbjct: 229 IVGKPNVGKSSLLNSILGENRAIVTDIPGTTRDVIEEFVNIKGIPLKIVDTAGIRETDDV 288 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITS---------FLRKKNIPIIIV 117 + K +++ + + A LI+ ++DS + ++ D I L K ++P +I Sbjct: 289 -VEKIGVEKSMASFDTADLIIMVVDSSSELSEEDREILEKVQGKETILLLNKTDLPQVID 347 Query: 118 SNKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVI 159 ++ + + N I++ISA H+ G ++H I Sbjct: 348 EEEVKKYVNEEN-----------IIKISALHNEGIEDVHDRI 378 >gi|152993155|ref|YP_001358876.1| tRNA modification GTPase TrmE [Sulfurovum sp. NBC37-1] gi|205829171|sp|A6QAL0|MNME_SULNB RecName: Full=tRNA modification GTPase mnmE gi|151425016|dbj|BAF72519.1| tRNA modification GTPase TrmE [Sulfurovum sp. NBC37-1] Length = 450 Score = 86.7 bits (213), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 54/207 (26%), Positives = 111/207 (53%), Gaps = 13/207 (6%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 + + + ++A++G+PNVGKS+L+N LL Y+R + +G TRD++ +H I + D Sbjct: 213 RGLIEGFKVAIIGKPNVGKSSLLNALLSYDRAIVSDIAGTTRDTIEEQVRIGSHIIRLVD 272 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD---LRIVDSVFNTG 314 TAG+R+ +++E+ +++S+ SV + I L D + F+ +D L IVD++ + Sbjct: 273 TAGIRESE---DTIEKIGIERSLSSVEDADIIIALFDGSREFDSEDEKILAIVDALQDK- 328 Query: 315 HAVVLALNKWDMV----SDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVS 370 H +++A+NK D+ D++N + A K ++ + + GEG + +++S Sbjct: 329 H-IIVAINKSDLEMKLDGDRINSYDPIEVSAKKGFVKLTR-QMEALLDSIGEGEELMLIS 386 Query: 371 VLEINKLWKTRITTSYLNSWLQKTQLQ 397 +I + + + + L +L+ Sbjct: 387 ARQIEAVNRAKNAIAEAKEPLMNGELE 413 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 43/123 (34%), Positives = 67/123 (54%), Gaps = 6/123 (4%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + +AI+G PNVGKS+L N L+ A+V + G TRD + Q I I +VDTAGI + Sbjct: 219 FKVAIIGKPNVGKSSLLNALLSYDRAIVSDIAGTTRDTIEEQVRIGSHIIRLVDTAGIRE 278 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDH---AITSFLRKKNIPIIIVSN 119 ++ +I K +++ ++ +A +I+ L D D AI L+ K+ II+ N Sbjct: 279 SED-TIEKIGIERSLSSVEDADIIIALFDGSREFDSEDEKILAIVDALQDKH--IIVAIN 335 Query: 120 KMD 122 K D Sbjct: 336 KSD 338 >gi|170077787|ref|YP_001734425.1| tRNA modification GTPase TrmE [Synechococcus sp. PCC 7002] gi|205829178|sp|B1XKC3|MNME_SYNP2 RecName: Full=tRNA modification GTPase mnmE gi|169885456|gb|ACA99169.1| tRNA modification GTPase TrmE [Synechococcus sp. PCC 7002] Length = 460 Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 89/164 (54%), Gaps = 10/164 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKS+L N + A+V + PG TRD + Q ++ G+ ++DTAGI D + Sbjct: 224 VAIVGRPNVGKSSLLNAWSRSDRAIVTDLPGTTRDVVESQLVVQGIPVQVLDTAGIRDTE 283 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLR----KKNIPIIIVSNK 120 + ++ K ++ A +A LILF ID+ G T D I F R K N P+I++ NK Sbjct: 284 D-AVEKIGVARSLAASQQADLILFTIDAAVGWTAADQEI--FQRIVATKANQPLILILNK 340 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFK 164 +D I Q EI + +V+ +A G EL + I + + Sbjct: 341 ID--IGQPEAIEIPP-QVQGVVKTAAAQHQGVDELETAIANLVQ 381 Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 67/125 (53%), Gaps = 5/125 (4%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 L++A+VGRPNVGKS+L+N +R + G TRD V + P+++ DTAG+R Sbjct: 222 LKVAIVGRPNVGKSSLLNAWSRSDRAIVTDLPGTTRDVVESQLVVQGIPVQVLDTAGIRD 281 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNT--GHAVVLAL 321 +++E+ V +S+ + + + + +DA + + D I + T ++L L Sbjct: 282 TE---DAVEKIGVARSLAASQQADLILFTIDAAVGWTAADQEIFQRIVATKANQPLILIL 338 Query: 322 NKWDM 326 NK D+ Sbjct: 339 NKIDI 343 >gi|298735582|ref|YP_003728105.1| tRNA modification GTPase [Helicobacter pylori B8] gi|298354769|emb|CBI65641.1| tRNA modification GTPase [Helicobacter pylori B8] Length = 461 Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 39/122 (31%), Positives = 73/122 (59%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +++VG+PN GKS+L+N +L R L G TRD++ K H + + DTAG+R+ + Sbjct: 227 LSIVGKPNAGKSSLLNAMLLEERALVSDIKGTTRDTIEEVIELKGHKVRLIDTAGIRESA 286 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + +E+ ++KS++S+ C+ + + D + P EK+D ++D++ ++ LNK D Sbjct: 287 ---DKIERLGIEKSLKSLENCDIILGVFDLSKPLEKEDFNLIDTLNRAKKPCIVVLNKND 343 Query: 326 MV 327 +V Sbjct: 344 LV 345 Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 62/120 (51%), Gaps = 1/120 (0%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + ++IVG PN GKS+L N ++ ++ A+V + G TRD + + G ++DTAGI + Sbjct: 225 HALSIVGKPNAGKSSLLNAMLLEERALVSDIKGTTRDTIEEVIELKGHKVRLIDTAGIRE 284 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + I + +++ ++ +IL + D + D + L + P I+V NK D Sbjct: 285 SAD-KIERLGIEKSLKSLENCDIILGVFDLSKPLEKEDFNLIDTLNRAKKPCIVVLNKND 343 >gi|317502138|ref|ZP_07960316.1| GTP-binding protein Era [Lachnospiraceae bacterium 8_1_57FAA] gi|331090350|ref|ZP_08339233.1| GTP-binding protein Era [Lachnospiraceae bacterium 3_1_46FAA] gi|316896455|gb|EFV18548.1| GTP-binding protein Era [Lachnospiraceae bacterium 8_1_57FAA] gi|330401305|gb|EGG80893.1| GTP-binding protein Era [Lachnospiraceae bacterium 3_1_46FAA] Length = 298 Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 57/161 (35%), Positives = 84/161 (52%), Gaps = 5/161 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + ++G PNVGKSTL N L+ +K+A+ N P TR+R+ VDT GI K Sbjct: 10 VTLIGRPNVGKSTLMNHLIGQKIAITSNKPQTTRNRIQTVLTTEEGQIVFVDTPGIHKAK 69 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N + + M + E ++NE ++L+L++ A I D I L+K P+++V NK+D Sbjct: 70 N-KLGEYMVNIAERSLNEVDVVLWLVEPSAFIGAGDRHIIEQLKKVKTPVVLVINKIDMV 128 Query: 125 IAQR--NFYEIY--SLDFKEIVEISAEHDLGTSELHSVIFK 161 + F + Y DF EIV +SA T EL VI K Sbjct: 129 KKEEILTFIDAYRKEYDFAEIVPVSARSGDNTDELIKVILK 169 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 44/170 (25%), Positives = 79/170 (46%), Gaps = 12/170 (7%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 + ++GRPNVGKSTL+N L+G +T ++ TR+ + + I DT G+ K Sbjct: 10 VTLIGRPNVGKSTLMNHLIGQKIAITSNKPQTTRNRIQTVLTTEEGQIVFVDTPGIHKAK 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + V + +S+ + + L++ + D I++ + VVL +NK D Sbjct: 70 N---KLGEYMVNIAERSLNEVDVVLWLVEPSAFIGAGDRHIIEQLKKVKTPVVLVINKID 126 Query: 326 MVSDK--LNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 MV + L + R + I +S R+G+ D+L+ +L+ Sbjct: 127 MVKKEEILTFIDAYRK-------EYDFAEIVPVSARSGDNTDELIKVILK 169 >gi|109946790|ref|YP_664018.1| tRNA modification GTPase TrmE [Helicobacter acinonychis str. Sheeba] gi|122973443|sp|Q17ZA7|MNME_HELAH RecName: Full=tRNA modification GTPase mnmE gi|109714011|emb|CAJ99019.1| thiophene and furan oxidizer [Helicobacter acinonychis str. Sheeba] Length = 450 Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 59/208 (28%), Positives = 105/208 (50%), Gaps = 11/208 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 ++++G+PN GKS+L+N +L R L G TRD++ + H + + DTAG+R+ Sbjct: 216 LSIIGKPNAGKSSLLNAMLLEERALVSDIKGTTRDTIEEVIELQGHKVRLIDTAGIRES- 274 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + +E+ ++KS++S+ C+ + + D + P EK+D I+D++ T ++ LNK D Sbjct: 275 --VDKIERLGIEKSLKSLENCDIILSVFDLSKPLEKEDFNIIDALNRTKKPCIVVLNKND 332 Query: 326 MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTS 385 + S KL L + +K+ QI + T + + L DL + T+ Sbjct: 333 L-SPKLEL------EVLKSHLQIPYSMLETNTLNSKACLKDLSQKISAFFPKLDTQ-NKL 384 Query: 386 YLNSWLQKTQLQNPPPTIFNRYNRLKYI 413 L S QK L+N + N N L+ + Sbjct: 385 LLTSLAQKNALENAITELQNAKNHLETL 412 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 62/120 (51%), Gaps = 1/120 (0%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + ++I+G PN GKS+L N ++ ++ A+V + G TRD + + G ++DTAGI + Sbjct: 214 HALSIIGKPNAGKSSLLNAMLLEERALVSDIKGTTRDTIEEVIELQGHKVRLIDTAGIRE 273 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + I + +++ ++ +IL + D + D I L + P I+V NK D Sbjct: 274 SVD-KIERLGIEKSLKSLENCDIILSVFDLSKPLEKEDFNIIDALNRTKKPCIVVLNKND 332 >gi|217033108|ref|ZP_03438572.1| hypothetical protein HPB128_27g15 [Helicobacter pylori B128] gi|216945181|gb|EEC23872.1| hypothetical protein HPB128_27g15 [Helicobacter pylori B128] Length = 450 Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 39/122 (31%), Positives = 73/122 (59%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +++VG+PN GKS+L+N +L R L G TRD++ K H + + DTAG+R+ + Sbjct: 216 LSIVGKPNAGKSSLLNAMLLEERALVSDIKGTTRDTIEEVIELKGHKVRLIDTAGIRESA 275 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + +E+ ++KS++S+ C+ + + D + P EK+D ++D++ ++ LNK D Sbjct: 276 ---DKIERLGIEKSLKSLENCDIILGVFDLSKPLEKEDFNLIDTLNRAKKPCIVVLNKND 332 Query: 326 MV 327 +V Sbjct: 333 LV 334 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 62/120 (51%), Gaps = 1/120 (0%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + ++IVG PN GKS+L N ++ ++ A+V + G TRD + + G ++DTAGI + Sbjct: 214 HALSIVGKPNAGKSSLLNAMLLEERALVSDIKGTTRDTIEEVIELKGHKVRLIDTAGIRE 273 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + I + +++ ++ +IL + D + D + L + P I+V NK D Sbjct: 274 SAD-KIERLGIEKSLKSLENCDIILGVFDLSKPLEKEDFNLIDTLNRAKKPCIVVLNKND 332 >gi|257127029|ref|YP_003165143.1| tRNA modification GTPase TrmE [Leptotrichia buccalis C-1013-b] gi|257050968|gb|ACV40152.1| tRNA modification GTPase TrmE [Leptotrichia buccalis C-1013-b] Length = 455 Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 54/163 (33%), Positives = 92/163 (56%), Gaps = 6/163 (3%) Query: 171 PLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLL 230 P+E+ +N ++ E I S ++ K I + ++ +VG+PNVGKSTL+N LL R + Sbjct: 188 PVELRDNLEKVYEEANRLIDS--YNTGKKIKEGIKTVIVGKPNVGKSTLLNALLHEERAI 245 Query: 231 TGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTI 290 +G TRD + N K P+ + DTAG+RK I E++ V+KS Q + + + Sbjct: 246 VTHIAGTTRDVIEEIINIKGIPLVLVDTAGIRKTDDIVENI---GVEKSKQFIEKADLVL 302 Query: 291 VLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNL 333 ++LDA+ E +D+ ++ + V++ LNK D+ + K+NL Sbjct: 303 LVLDASKKLETEDIEVITKIKENNKKVIVLLNKIDL-NKKINL 344 Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 59/204 (28%), Positives = 115/204 (56%), Gaps = 13/204 (6%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PNVGKSTL N L+ ++ A+V + G TRD + I G+ +VDTAGI K Sbjct: 223 IVGKPNVGKSTLLNALLHEERAIVTHIAGTTRDVIEEIINIKGIPLVLVDTAGIR--KTD 280 Query: 67 SIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 I + + ++++ I +A L+L ++D+ + D + + +++ N +I++ NK+D + Sbjct: 281 DIVENIGVEKSKQFIEKADLVLLVLDASKKLETEDIEVITKIKENNKKVIVLLNKID--L 338 Query: 126 AQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK-IFKQKYPNHPLEMIENNKRNEES 184 ++ E Y+L+ IVEISA+ ++G ++ I+ I ++ N ++I N R++ + Sbjct: 339 NKKINLEGYNLE--NIVEISAKDNIGIEDMQEKIYSYIVEEDVENSSEKLIITNIRHKTA 396 Query: 185 PKENITSEGKSSVKNISKPLRIAV 208 ++ K +++NI + + + + Sbjct: 397 LEKT-----KDAIRNIFETIDMGL 415 >gi|291550500|emb|CBL26762.1| GTP-binding protein Era [Ruminococcus torques L2-14] Length = 299 Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 57/161 (35%), Positives = 85/161 (52%), Gaps = 5/161 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + ++G PNVGKSTL NRL+ +K+A+ N P TR+R+ VDT GI K Sbjct: 10 VTLIGRPNVGKSTLMNRLIGQKIAITSNKPQTTRNRIQTVLTTEEGQIVFVDTPGIHKAK 69 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N + + M + E ++NE ++L+L++ I + I L+K P+I+V NK+D Sbjct: 70 N-KLGEYMVNIAERSLNEVDVVLWLVEPSTFIGAGEKHIIEQLKKVKTPVILVINKVDMV 128 Query: 125 IAQR--NFYEIY--SLDFKEIVEISAEHDLGTSELHSVIFK 161 + F + Y DF EIV +SA T EL +VI K Sbjct: 129 KKEEVLTFIDAYRKECDFAEIVPVSARRGDNTDELVNVIMK 169 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 42/165 (25%), Positives = 78/165 (47%), Gaps = 12/165 (7%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 + ++GRPNVGKSTL+NRL+G +T ++ TR+ + + I DT G+ K Sbjct: 10 VTLIGRPNVGKSTLMNRLIGQKIAITSNKPQTTRNRIQTVLTTEEGQIVFVDTPGIHKAK 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + V + +S+ + + L++ + + I++ + V+L +NK D Sbjct: 70 N---KLGEYMVNIAERSLNEVDVVLWLVEPSTFIGAGEKHIIEQLKKVKTPVILVINKVD 126 Query: 326 MVSDK--LNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLM 368 MV + L + R + + + I +S R G+ D+L+ Sbjct: 127 MVKKEEVLTFIDAYRKEC--DFAE-----IVPVSARRGDNTDELV 164 >gi|307151569|ref|YP_003886953.1| tRNA modification GTPase TrmE [Cyanothece sp. PCC 7822] gi|306981797|gb|ADN13678.1| tRNA modification GTPase TrmE [Cyanothece sp. PCC 7822] Length = 458 Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 55/156 (35%), Positives = 85/156 (54%), Gaps = 6/156 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKS+L N + A+V + PG TRD + Q ++ G+ ++DTAGI + Sbjct: 226 VAIVGRPNVGKSSLLNAWSRSDRAIVTDLPGTTRDVVESQLVVGGIPIQVLDTAGIRETD 285 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + K +++ A A LIL ID++ G TP D I + + K+ P+I+V NK D + Sbjct: 286 D-RVEKIGVERSRHAAEAADLILLTIDAQTGWTPEDEQI--YQQVKHRPLILVINKTDLQ 342 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 A+ Y D +VE A + G +L +I Sbjct: 343 EAKSVN---YPSDITSVVETVAAKNEGIDQLEKIIL 375 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 61/202 (30%), Positives = 103/202 (50%), Gaps = 24/202 (11%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 L++A+VGRPNVGKS+L+N +R + G TRD V PI++ DTAG+R+ Sbjct: 224 LKVAIVGRPNVGKSSLLNAWSRSDRAIVTDLPGTTRDVVESQLVVGGIPIQVLDTAGIRE 283 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 + +E+ V++S + + ++ +DA + +D +I V + ++L +NK Sbjct: 284 TD---DRVEKIGVERSRHAAEAADLILLTIDAQTGWTPEDEQIYQQVKH--RPLILVINK 338 Query: 324 WDMVSDK-LNLLQDL----RTKAIKN--LPQIGDIYINTI-SGRTGEGLDDLMVSVLE-- 373 D+ K +N D+ T A KN + Q+ I +N++ SG L V+ LE Sbjct: 339 TDLQEAKSVNYPSDITSVVETVAAKNEGIDQLEKIILNSVQSGH-------LTVTNLEIA 391 Query: 374 INKLWKTRITTSYLNSWLQKTQ 395 IN+ +T + L+ LQ+ Q Sbjct: 392 INQRQAAALTQASLS--LQQVQ 411 >gi|317014865|gb|ADU82301.1| tRNA modification GTPase TrmE [Helicobacter pylori Gambia94/24] Length = 450 Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 39/122 (31%), Positives = 74/122 (60%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +++VG+PN GKS+L+N +L R L + G TRD++ K H + + DTAG+R+ + Sbjct: 216 LSIVGKPNAGKSSLLNAMLLEERALVSNIKGTTRDTIEEVIELKGHKVRLIDTAGIRESA 275 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + +E+ ++KS++S+ C+ + + D + P EK+D ++D++ ++ LNK D Sbjct: 276 ---DEIERLGIEKSLKSLENCDIILGVFDLSKPLEKEDFNLMDTLNRAKKPCIVVLNKND 332 Query: 326 MV 327 +V Sbjct: 333 LV 334 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 62/120 (51%), Gaps = 1/120 (0%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + ++IVG PN GKS+L N ++ ++ A+V N G TRD + + G ++DTAGI + Sbjct: 214 HALSIVGKPNAGKSSLLNAMLLEERALVSNIKGTTRDTIEEVIELKGHKVRLIDTAGIRE 273 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + I + +++ ++ +IL + D + D + L + P I+V NK D Sbjct: 274 SAD-EIERLGIEKSLKSLENCDIILGVFDLSKPLEKEDFNLMDTLNRAKKPCIVVLNKND 332 >gi|317472412|ref|ZP_07931737.1| tRNA modification GTPase TrmE [Anaerostipes sp. 3_2_56FAA] gi|316900132|gb|EFV22121.1| tRNA modification GTPase TrmE [Anaerostipes sp. 3_2_56FAA] Length = 457 Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 51/158 (32%), Positives = 90/158 (56%), Gaps = 4/158 (2%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AIVG PN GKS++ N L+ K+ A+V + G TRD L ING+ N++DTAGI D + Sbjct: 224 AIVGKPNAGKSSILNVLLGKERAIVTDIAGTTRDTLEESIQINGIPLNVIDTAGIRDTDD 283 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 + K D+ ++ +A L+L+++D+ +T D I L K + +++ + ++T++ Sbjct: 284 V-VEKIGVDKARDSVIKADLVLYVVDTSVPLTKEDEEIMKLLNGKQVIVLLNKSDLETKV 342 Query: 126 AQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 ++ F + F+ IV +SA+ G +L+ I +F Sbjct: 343 SESEFLD---RGFQNIVPVSAKSLYGLEDLYERINDLF 377 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 41/127 (32%), Positives = 71/127 (55%), Gaps = 5/127 (3%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + + A+VG+PN GKS+++N LLG R + +G TRD++ S P+ + DTA Sbjct: 217 LKEGIHTAIVGKPNAGKSSILNVLLGKERAIVTDIAGTTRDTLEESIQINGIPLNVIDTA 276 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R + E + V K+ SV + + ++D ++P K+D I+ + N G V++ Sbjct: 277 GIRDTDDVVEKI---GVDKARDSVIKADLVLYVVDTSVPLTKEDEEIM-KLLN-GKQVIV 331 Query: 320 ALNKWDM 326 LNK D+ Sbjct: 332 LLNKSDL 338 >gi|126657505|ref|ZP_01728661.1| tRNA modification GTPase [Cyanothece sp. CCY0110] gi|126621209|gb|EAZ91922.1| tRNA modification GTPase [Cyanothece sp. CCY0110] Length = 460 Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 63/185 (34%), Positives = 97/185 (52%), Gaps = 23/185 (12%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKS+L N + A+V + PG TRD + Q ++ G+ ++DTAGI Sbjct: 228 VAIVGRPNVGKSSLLNAWSRSDRAIVTDLPGTTRDVVESQLVVGGIPIQVLDTAGI---- 283 Query: 65 NCSIAKQMNDQTE--------LAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIII 116 +Q DQ E LA ++A L+L ID+ G T D I +R ++P I+ Sbjct: 284 -----RQTTDQVEKIGVERSRLAASQADLVLLTIDATVGWTVEDSEIYQPIR--HLPTIL 336 Query: 117 VSNKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK-IFKQKYPNHPLEMI 175 V NK+D +A + + + + K IV+ SA + G L S I + I +QK + L+ Sbjct: 337 VINKID--LATPDLSQ-FPPEIKGIVKTSAANHQGIEALESTILQGINQQKLTANNLDFA 393 Query: 176 ENNKR 180 N ++ Sbjct: 394 INQRQ 398 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 40/129 (31%), Positives = 71/129 (55%), Gaps = 5/129 (3%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 L++A+VGRPNVGKS+L+N +R + G TRD V PI++ DTAG+R+ Sbjct: 226 LKVAIVGRPNVGKSSLLNAWSRSDRAIVTDLPGTTRDVVESQLVVGGIPIQVLDTAGIRQ 285 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 T+ +E+ V++S + + ++ +DAT+ + +D I + + +L +NK Sbjct: 286 ---TTDQVEKIGVERSRLAASQADLVLLTIDATVGWTVEDSEIYQPIRHL--PTILVINK 340 Query: 324 WDMVSDKLN 332 D+ + L+ Sbjct: 341 IDLATPDLS 349 >gi|15612410|ref|NP_224063.1| tRNA modification GTPase TrmE [Helicobacter pylori J99] gi|14195308|sp|Q9ZJG6|MNME_HELPJ RecName: Full=tRNA modification GTPase mnmE gi|4155957|gb|AAD06922.1| putative thiophene/furan oxidation protein [Helicobacter pylori J99] Length = 461 Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 39/122 (31%), Positives = 73/122 (59%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +++VG+PN GKS+L+N +L R L G TRD++ K H + + DTAG+R+ + Sbjct: 227 LSIVGKPNAGKSSLLNAMLLEERALVSDIKGTTRDTIEEVIELKGHKVRLIDTAGIRESA 286 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + +E+ ++KS++S+ C+ + + D + P EK+D ++D++ T ++ LNK D Sbjct: 287 ---DEIERLGIEKSLKSLENCDIILGVFDLSKPLEKEDFNLMDTLNRTKKPCIVVLNKND 343 Query: 326 MV 327 + Sbjct: 344 LA 345 Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 62/120 (51%), Gaps = 1/120 (0%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + ++IVG PN GKS+L N ++ ++ A+V + G TRD + + G ++DTAGI + Sbjct: 225 HALSIVGKPNAGKSSLLNAMLLEERALVSDIKGTTRDTIEEVIELKGHKVRLIDTAGIRE 284 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + I + +++ ++ +IL + D + D + L + P I+V NK D Sbjct: 285 SAD-EIERLGIEKSLKSLENCDIILGVFDLSKPLEKEDFNLMDTLNRTKKPCIVVLNKND 343 >gi|255321603|ref|ZP_05362761.1| tRNA modification GTPase TrmE [Campylobacter showae RM3277] gi|255301459|gb|EET80718.1| tRNA modification GTPase TrmE [Campylobacter showae RM3277] Length = 439 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 42/131 (32%), Positives = 77/131 (58%), Gaps = 3/131 (2%) Query: 196 SVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEI 255 S K + + +IA+VG+PNVGKS+++N LL Y R + ++G TRDS+ + H + I Sbjct: 206 SRKGLLEGFKIAIVGKPNVGKSSILNSLLSYERAIISDEAGTTRDSIEEALKIGTHLVRI 265 Query: 256 FDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGH 315 DTAG+RK + +EQ + S+++++ + + + DA+ ++QD I++ + + Sbjct: 266 IDTAGIRKNAG---KIEQIGISYSLRAIKEADVILAIFDASQEADEQDNEILELLKRSQK 322 Query: 316 AVVLALNKWDM 326 + LNK D+ Sbjct: 323 KIFYVLNKCDL 333 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 44/121 (36%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + IAIVG PNVGKS++ N L+ + A++ + G TRD + I + I+DTAGI Sbjct: 214 FKIAIVGKPNVGKSSILNSLLSYERAIISDEAGTTRDSIEEALKIGTHLVRIIDTAGIR- 272 Query: 63 GKNCSIAKQMNDQTEL-AINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 KN +Q+ L AI EA +IL + D+ D+ I L++ I V NK Sbjct: 273 -KNAGKIEQIGISYSLRAIKEADVILAIFDASQEADEQDNEILELLKRSQKKIFYVLNKC 331 Query: 122 D 122 D Sbjct: 332 D 332 >gi|257126292|ref|YP_003164406.1| GTP-binding protein Era [Leptotrichia buccalis C-1013-b] gi|257050231|gb|ACV39415.1| GTP-binding protein Era [Leptotrichia buccalis C-1013-b] Length = 293 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 66/202 (32%), Positives = 100/202 (49%), Gaps = 11/202 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 I IVG PNVGKSTL N+LVK+K+A+V + G TRD++ G I F VDT GI K Sbjct: 6 ITIVGRPNVGKSTLMNKLVKEKVAIVSDKAGTTRDQIKGIVNIGESQFIFVDTPGIHKPK 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + + M + A+ LI+F++D I+ D + +R N PI++V NK+D R Sbjct: 66 HL-LGEHMTNVALEALENVDLIMFMLDGTQEISTGDMFVNENVRSVNTPIVLVINKID-R 123 Query: 125 IAQRNFYEIYSL------DFKEIVEISAEHDLGTSELHSVIFKIFKQK---YPNHPLEMI 175 + E +F EI+ ++AE+ +G ++ V K YP + Sbjct: 124 MTDEEIEEKKKEIREKLGEFDEIITLTAEYAIGIHKIFEVAEKYLSNDVWFYPEDYYTDL 183 Query: 176 ENNKRNEESPKENITSEGKSSV 197 NK E+ +E I K + Sbjct: 184 PVNKIVVETVREKILHHTKDEI 205 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 36/124 (29%), Positives = 64/124 (51%), Gaps = 3/124 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 I +VGRPNVGKSTL+N+L+ + ++G TRD + N DT G+ KP Sbjct: 6 ITIVGRPNVGKSTLMNKLVKEKVAIVSDKAGTTRDQIKGIVNIGESQFIFVDTPGIHKPK 65 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + L + +++++ + + +LD T D+ + ++V + +VL +NK D Sbjct: 66 HL---LGEHMTNVALEALENVDLIMFMLDGTQEISTGDMFVNENVRSVNTPIVLVINKID 122 Query: 326 MVSD 329 ++D Sbjct: 123 RMTD 126 >gi|188585831|ref|YP_001917376.1| GTP-binding protein Era [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350518|gb|ACB84788.1| GTP-binding protein Era [Natranaerobius thermophilus JW/NM-WN-LF] Length = 297 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 53/163 (32%), Positives = 85/163 (52%), Gaps = 8/163 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 ++V+GRPN GKSTLIN +LG ++T + TR+ + +N +N I DT GM KP Sbjct: 11 VSVIGRPNAGKSTLINYILGEKVVITSDKPQTTRNKIQCVYNGENSQIIFLDTPGMHKPK 70 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L +K VK +S+ + + ++D ++PF K + +V+ + V+L +NK D Sbjct: 71 H---KLGEKMVKAVDESLNEMDAILFVIDVSVPFGKGETMLVERLARLSTPVILVMNKMD 127 Query: 326 MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLM 368 +V + L R K K ++ I+ IS G L DL+ Sbjct: 128 LVDEDLA-----REKTEKIKEKLSPESIHYISALYGNNLVDLL 165 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 38/122 (31%), Positives = 69/122 (56%), Gaps = 9/122 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIING----VIFNIVDTAGI 60 ++++G PN GKSTL N ++ +K+ + + P TR+++ Q + NG +IF +DT G+ Sbjct: 11 VSVIGRPNAGKSTLINYILGEKVVITSDKPQTTRNKI--QCVYNGENSQIIF--LDTPGM 66 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 K+ + ++M + ++NE ILF+ID + + L + + P+I+V NK Sbjct: 67 HKPKH-KLGEKMVKAVDESLNEMDAILFVIDVSVPFGKGETMLVERLARLSTPVILVMNK 125 Query: 121 MD 122 MD Sbjct: 126 MD 127 >gi|22002507|gb|AAM82659.1| TrmE [Synechococcus elongatus PCC 7942] Length = 482 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 55/158 (34%), Positives = 86/158 (54%), Gaps = 6/158 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKS+L N + A+V + PG TRD + Q I+ G+ ++DTAGI + Sbjct: 246 IAIVGRPNVGKSSLLNAWSRCDRAIVTDLPGTTRDLVESQLIVGGIPVQVLDTAGIRETS 305 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + + +++ A A L+L ID+ AG + D I + + PI++V NK D R Sbjct: 306 D-QVEQIGVERSRRAAQSADLVLLTIDASAGWSAEDQTIWEAVSDR--PILLVINKRD-R 361 Query: 125 I--AQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 + A+R+ + +FK IV +A G +L + I Sbjct: 362 LSEAERHAIALPQQEFKAIVWTAAAQQQGIEDLEAAIL 399 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 50/168 (29%), Positives = 90/168 (53%), Gaps = 13/168 (7%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP 264 +IA+VGRPNVGKS+L+N +R + G TRD V P+++ DTAG+R+ Sbjct: 245 KIAIVGRPNVGKSSLLNAWSRCDRAIVTDLPGTTRDLVESQLIVGGIPVQVLDTAGIRET 304 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 S + +EQ V++S ++ ++ + ++ +DA+ + +D I ++V + ++L +NK Sbjct: 305 S---DQVEQIGVERSRRAAQSADLVLLTIDASAGWSAEDQTIWEAVSD--RPILLVINKR 359 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVL 372 D +S+ AI LPQ I + +G++DL ++L Sbjct: 360 DRLSEA-------ERHAIA-LPQQEFKAIVWTAAAQQQGIEDLEAAIL 399 >gi|1549379|gb|AAB50392.1| putative protein [Synechococcus elongatus PCC 7942] Length = 208 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 53/200 (26%), Positives = 102/200 (51%), Gaps = 9/200 (4%) Query: 276 VKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM----VSDKL 331 + +S +++R + ++++D QD ++ + G A V+ +NKWD S Sbjct: 5 INRSFKAIRRADVCLLVIDVLDGVTDQDQKLAGRIEEDGRACVIVVNKWDAHEKDSSTIY 64 Query: 332 NLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWL 391 + + LR + + L I+++ ++G+ E + D + +V+E ++ R+ TS +N L Sbjct: 65 EVERQLRDR-LYFLDWAPMIFVSALTGQRVEKILDQVNTVVEQHR---RRVGTSVINEVL 120 Query: 392 QKT-QLQNPPPTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFS 450 + PP T R R+ Y TQ+ + PPSF +F P ESY+RY+ + R + Sbjct: 121 GDAIAWRTPPTTRQGRQGRIYYGTQVTTQPPSFTLFVNDPKLFGESYRRYIERQFRESLG 180 Query: 451 LSGIPIRMCFQSSKNPYIKK 470 SG PIR+ ++ K+ +++ Sbjct: 181 FSGTPIRLFWRGKKSRELER 200 >gi|108563803|ref|YP_628119.1| tRNA modification GTPase TrmE [Helicobacter pylori HPAG1] gi|123073715|sp|Q1CRH7|MNME_HELPH RecName: Full=tRNA modification GTPase mnmE gi|107837576|gb|ABF85445.1| putative thiophene/furan oxidation protein [Helicobacter pylori HPAG1] Length = 461 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 39/122 (31%), Positives = 72/122 (59%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +++VG+PN GKS+L+N +L R L G TRD++ K H + + DTAG+R+ + Sbjct: 227 LSIVGKPNAGKSSLLNAMLLEERALVSDIKGTTRDTIEEVIELKGHKVRLIDTAGIRESA 286 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + +E+ ++KS++S+ C+ + + D + P EK+D I+D++ ++ LNK D Sbjct: 287 ---DKIERLGIEKSLKSLENCDIILGVFDLSKPLEKEDFTIIDALNRAKKPCIVVLNKND 343 Query: 326 MV 327 + Sbjct: 344 LA 345 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 62/120 (51%), Gaps = 1/120 (0%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + ++IVG PN GKS+L N ++ ++ A+V + G TRD + + G ++DTAGI + Sbjct: 225 HALSIVGKPNAGKSSLLNAMLLEERALVSDIKGTTRDTIEEVIELKGHKVRLIDTAGIRE 284 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + I + +++ ++ +IL + D + D I L + P I+V NK D Sbjct: 285 SAD-KIERLGIEKSLKSLENCDIILGVFDLSKPLEKEDFTIIDALNRAKKPCIVVLNKND 343 >gi|315638574|ref|ZP_07893748.1| tRNA modification GTPase TrmE [Campylobacter upsaliensis JV21] gi|315481198|gb|EFU71828.1| tRNA modification GTPase TrmE [Campylobacter upsaliensis JV21] Length = 442 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 44/131 (33%), Positives = 76/131 (58%), Gaps = 3/131 (2%) Query: 196 SVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEI 255 S K + + +IA++G+PN GKS+L+N LL Y R + +G TRD + S H ++I Sbjct: 207 SKKALLEGFKIAIIGKPNAGKSSLLNALLAYERAIVSPLAGTTRDFIEESLKIGTHLVKI 266 Query: 256 FDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGH 315 DTAG+R+ E LE+ ++ S +S+ + + L D++ F+++D I++ + N+ Sbjct: 267 MDTAGIRESE---EELEKIGIELSKKSLNEADIILALFDSSREFDEEDKEILNLLKNSEK 323 Query: 316 AVVLALNKWDM 326 V LNK D+ Sbjct: 324 KVFYLLNKCDL 334 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 47/148 (31%), Positives = 76/148 (51%), Gaps = 7/148 (4%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + IAI+G PN GKS+L N L+ + A+V G TRD + I + I+DTAGI + Sbjct: 215 FKIAIIGKPNAGKSSLLNALLAYERAIVSPLAGTTRDFIEESLKIGTHLVKIMDTAGIRE 274 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + + K + ++ ++NEA +IL L DS D I + L+ + + NK D Sbjct: 275 SEE-ELEKIGIELSKKSLNEADIILALFDSSREFDEEDKEILNLLKNSEKKVFYLLNKCD 333 Query: 123 TRIAQRNFYEIYSLDFKEIVEISAEHDL 150 + N EI ++++ISA+ D+ Sbjct: 334 LKPQFENLNEI------DLIKISAKEDI 355 >gi|298490946|ref|YP_003721123.1| tRNA modification GTPase TrmE ['Nostoc azollae' 0708] gi|298232864|gb|ADI64000.1| tRNA modification GTPase TrmE ['Nostoc azollae' 0708] Length = 464 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 59/190 (31%), Positives = 100/190 (52%), Gaps = 5/190 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKS+L N + A+V + PG TRD + Q ++ G+ ++DTAGI + Sbjct: 228 VAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETA 287 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD-T 123 + + K +++ A + A L+LF ID+ AG T D I + + K+ P+I+V NK+D Sbjct: 288 D-QVEKIGVERSRRASSAADLVLFTIDASAGWTQADQEI--YEQVKHRPVILVINKIDLI 344 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQ-KYPNHPLEMIENNKRNE 182 IA++ + K + +A + G L + + +I K K +++ N ++ Sbjct: 345 SIAEKQTLQSKIQSPKSKIVTAAAQNQGIDSLETAVLEIVKAGKVQAADIDLAINQRQAA 404 Query: 183 ESPKENITSE 192 K I+ E Sbjct: 405 ALTKAKISLE 414 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 53/183 (28%), Positives = 94/183 (51%), Gaps = 23/183 (12%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 L++A+VGRPNVGKS+L+N +R + G TRD V P+++ DTAG+R+ Sbjct: 226 LKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRE 285 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 + + +E+ V++S ++ + + +DA+ + + D I + V + V+L +NK Sbjct: 286 TA---DQVEKIGVERSRRASSAADLVLFTIDASAGWTQADQEIYEQVKH--RPVILVINK 340 Query: 324 WDMVS--DKLNL---LQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLW 378 D++S +K L +Q ++K + Q +G+D L +VLEI K Sbjct: 341 IDLISIAEKQTLQSKIQSPKSKIVTAAAQ-------------NQGIDSLETAVLEIVKAG 387 Query: 379 KTR 381 K + Sbjct: 388 KVQ 390 >gi|332674218|gb|AEE71035.1| tRNA modification GTPase TrmE [Helicobacter pylori 83] Length = 450 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 38/122 (31%), Positives = 73/122 (59%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +++VG+PN GKS+L+N +L R L G TRD++ + H + + DTAG+R+ + Sbjct: 216 LSIVGKPNAGKSSLLNAMLLEERALVSDIKGTTRDTIEEVIELQGHKVRLIDTAGIRESA 275 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + +E+ ++KS++S+ C+ + + D + P EK+D ++D++ ++ LNK D Sbjct: 276 ---DKIERLGIEKSLKSLENCDIVLGVFDLSKPLEKEDFNLIDTLNRAKKPCIVVLNKND 332 Query: 326 MV 327 +V Sbjct: 333 LV 334 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 33/120 (27%), Positives = 62/120 (51%), Gaps = 1/120 (0%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + ++IVG PN GKS+L N ++ ++ A+V + G TRD + + G ++DTAGI + Sbjct: 214 HALSIVGKPNAGKSSLLNAMLLEERALVSDIKGTTRDTIEEVIELQGHKVRLIDTAGIRE 273 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + I + +++ ++ ++L + D + D + L + P I+V NK D Sbjct: 274 SAD-KIERLGIEKSLKSLENCDIVLGVFDLSKPLEKEDFNLIDTLNRAKKPCIVVLNKND 332 >gi|83591335|ref|YP_431344.1| tRNA modification GTPase TrmE [Moorella thermoacetica ATCC 39073] gi|123523726|sp|Q2RFI8|MNME_MOOTA RecName: Full=tRNA modification GTPase mnmE gi|83574249|gb|ABC20801.1| tRNA modification GTPase trmE [Moorella thermoacetica ATCC 39073] Length = 462 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 55/176 (31%), Positives = 99/176 (56%), Gaps = 13/176 (7%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 +++ L++A+VGRPNVGKS+L+N LL R + + G TRD++ + + DTA Sbjct: 217 LTEGLKVAIVGRPNVGKSSLLNALLNQERAIVSNIPGTTRDTIEETLQLGGFTCRLIDTA 276 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R+ + + LE V +S +++ + +V++D + +D R+++SV + +++ Sbjct: 277 GLRETA---DELESIGVARSKKAIAAADLVLVVVDLQTGIQDEDRRVLESVRD--KVLII 331 Query: 320 ALNKWDMVSDKLN-LLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEI 374 NK D+V+ +N L DL + A N P++ +S G+GLD+L V EI Sbjct: 332 IGNKLDLVAHDINKKLADLESFA-GNYPRV------AVSALKGKGLDELARKVQEI 380 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 42/118 (35%), Positives = 68/118 (57%), Gaps = 3/118 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKS+L N L+ ++ A+V N PG TRD + + G ++DTAG+ + Sbjct: 223 VAIVGRPNVGKSSLLNALLNQERAIVSNIPGTTRDTIEETLQLGGFTCRLIDTAGLRETA 282 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + + +++ AI A L+L ++D + GI D + +R K +II+ NK+D Sbjct: 283 D-ELESIGVARSKKAIAAADLVLVVVDLQTGIQDEDRRVLESVRDK--VLIIIGNKLD 337 >gi|81300391|ref|YP_400599.1| tRNA modification GTPase TrmE [Synechococcus elongatus PCC 7942] gi|93141330|sp|Q8KPU2|MNME_SYNE7 RecName: Full=tRNA modification GTPase mnmE gi|81169272|gb|ABB57612.1| tRNA modification GTPase trmE [Synechococcus elongatus PCC 7942] Length = 462 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 55/158 (34%), Positives = 86/158 (54%), Gaps = 6/158 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKS+L N + A+V + PG TRD + Q I+ G+ ++DTAGI + Sbjct: 226 IAIVGRPNVGKSSLLNAWSRCDRAIVTDLPGTTRDLVESQLIVGGIPVQVLDTAGIRETS 285 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + + +++ A A L+L ID+ AG + D I + + PI++V NK D R Sbjct: 286 D-QVEQIGVERSRRAAQSADLVLLTIDASAGWSAEDQTIWEAVSDR--PILLVINKRD-R 341 Query: 125 I--AQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 + A+R+ + +FK IV +A G +L + I Sbjct: 342 LSEAERHAIALPQQEFKAIVWTAAAQQQGIEDLEAAIL 379 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 58/210 (27%), Positives = 103/210 (49%), Gaps = 14/210 (6%) Query: 163 FKQKYPNHPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINR 222 F+ P LE I + + I S + + L+IA+VGRPNVGKS+L+N Sbjct: 184 FEDDLPPLDLEAIAAQLTAAGADMQAILSTADRG-ELLRTGLKIAIVGRPNVGKSSLLNA 242 Query: 223 LLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQS 282 +R + G TRD V P+++ DTAG+R+ S + +EQ V++S ++ Sbjct: 243 WSRCDRAIVTDLPGTTRDLVESQLIVGGIPVQVLDTAGIRETS---DQVEQIGVERSRRA 299 Query: 283 VRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAI 342 ++ + ++ +DA+ + +D I ++V + ++L +NK D +S+ AI Sbjct: 300 AQSADLVLLTIDASAGWSAEDQTIWEAVSD--RPILLVINKRDRLSEA-------ERHAI 350 Query: 343 KNLPQIGDIYINTISGRTGEGLDDLMVSVL 372 LPQ I + +G++DL ++L Sbjct: 351 A-LPQQEFKAIVWTAAAQQQGIEDLEAAIL 379 >gi|164686452|ref|ZP_02210480.1| hypothetical protein CLOBAR_00017 [Clostridium bartlettii DSM 16795] gi|164604463|gb|EDQ97928.1| hypothetical protein CLOBAR_00017 [Clostridium bartlettii DSM 16795] Length = 462 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 55/178 (30%), Positives = 95/178 (53%), Gaps = 18/178 (10%) Query: 149 DLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAV 208 D ++ V +K ++K LE+ E K+ +S + S K + L+ + Sbjct: 183 DFSDEDVEDVTYKEIEEK----SLELREEIKKLYDSAE---------SGKILRDGLKTVI 229 Query: 209 VGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRIT 268 +G+PNVGKS+L+N +LG NR + +G TRD + N K P++I DTAG+R+ I Sbjct: 230 IGKPNVGKSSLLNSILGENRAIVTEIAGTTRDVIEEFVNIKGIPLKIVDTAGIRETEDIV 289 Query: 269 ESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 E + V+KS +S+ + + I++LD++ +DL I++S ++ LNK D+ Sbjct: 290 EKI---GVQKSKESIDSADLVIIVLDSSKSLTDEDLEILESA--KSKKTIVLLNKIDL 342 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 79/153 (51%), Gaps = 3/153 (1%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 I+G PNVGKS+L N ++ + A+V G TRD + I G+ IVDTAGI + ++ Sbjct: 229 IIGKPNVGKSSLLNSILGENRAIVTEIAGTTRDVIEEFVNIKGIPLKIVDTAGIRETEDI 288 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 + K +++ +I+ A L++ ++DS +T D I + K +++ +D I Sbjct: 289 -VEKIGVQKSKESIDSADLVIIVLDSSKSLTDEDLEILESAKSKKTIVLLNKIDLDQAID 347 Query: 127 QRNFYEIYSLDFKEIVEISAEHDLGTSELHSVI 159 + E D I++ISA + G ++H I Sbjct: 348 ETAIEEFVGKD--NIIKISALKNEGIEQIHDKI 378 >gi|308062715|gb|ADO04603.1| tRNA modification GTPase TrmE [Helicobacter pylori Cuz20] Length = 450 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 38/122 (31%), Positives = 72/122 (59%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +++VG+PN GKS+L+N +L R L G TRD++ + H + + DTAG+R+ Sbjct: 216 LSIVGKPNAGKSSLLNAMLLEERALVSDIKGTTRDTIEEVIELQGHKVRLIDTAGIRES- 274 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 T+ +E+ ++KS++S+ C+ + + D + P EK+D ++D++ ++ LNK D Sbjct: 275 --TDKIERLGIEKSLKSLENCDIVLGVFDLSKPLEKEDFNLIDTLNRAKKPCIVVLNKND 332 Query: 326 MV 327 + Sbjct: 333 LA 334 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 33/120 (27%), Positives = 62/120 (51%), Gaps = 1/120 (0%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + ++IVG PN GKS+L N ++ ++ A+V + G TRD + + G ++DTAGI + Sbjct: 214 HALSIVGKPNAGKSSLLNAMLLEERALVSDIKGTTRDTIEEVIELQGHKVRLIDTAGIRE 273 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + I + +++ ++ ++L + D + D + L + P I+V NK D Sbjct: 274 STD-KIERLGIEKSLKSLENCDIVLGVFDLSKPLEKEDFNLIDTLNRAKKPCIVVLNKND 332 >gi|237756325|ref|ZP_04584877.1| GTP-binding protein Era [Sulfurihydrogenibium yellowstonense SS-5] gi|237691511|gb|EEP60567.1| GTP-binding protein Era [Sulfurihydrogenibium yellowstonense SS-5] Length = 307 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 63/180 (35%), Positives = 92/180 (51%), Gaps = 14/180 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N ++ K+++V P TR R+ G + +DT G+ G Sbjct: 15 VAIVGRPNVGKSTLLNNIIGTKLSIVSPRPQTTRMRILGVKHLPDAQIIFLDTPGVQKGG 74 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITS-FLRKKNIPIIIVSNKMDT 123 + + K + + I A +IL +ID++AG T D I +L+K N P I+ NK+D Sbjct: 75 DL-LTKSVMESVVSGIESADVILMVIDAEAGWTKEDKEIVENYLKKVNKPAILAINKIDK 133 Query: 124 RIAQRNFY--------EIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 +R+ +IY DFKE V ISA +L EL I K + P +P + I Sbjct: 134 --IKRDLVLPLIEESTKIY--DFKEFVPISAIKNLNIDELIETIKKYLPESPPLYPEDQI 189 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/129 (27%), Positives = 66/129 (51%), Gaps = 4/129 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VGRPNVGKSTL+N ++G + + TR + + + I DT G++K Sbjct: 15 VAIVGRPNVGKSTLLNNIIGTKLSIVSPRPQTTRMRILGVKHLPDAQIIFLDTPGVQKGG 74 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVF-NTGHAVVLALNKW 324 + L + ++ + + + + ++++DA + K+D IV++ +LA+NK Sbjct: 75 DL---LTKSVMESVVSGIESADVILMVIDAEAGWTKEDKEIVENYLKKVNKPAILAINKI 131 Query: 325 DMVSDKLNL 333 D + L L Sbjct: 132 DKIKRDLVL 140 >gi|153853792|ref|ZP_01995148.1| hypothetical protein DORLON_01139 [Dorea longicatena DSM 13814] gi|149753542|gb|EDM63473.1| hypothetical protein DORLON_01139 [Dorea longicatena DSM 13814] Length = 298 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 56/163 (34%), Positives = 88/163 (53%), Gaps = 9/163 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + ++G PNVGKSTL N+L+ +K+A+ N P TR+R+ + VDT GI K Sbjct: 10 VTLIGRPNVGKSTLMNQLIGQKIAITSNKPQTTRNRIQTVLTTDDGQIVFVDTPGIHKAK 69 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 N + + M + E +NE ++L+L++ I + I S L+K P+++V NK+D+ Sbjct: 70 N-KLGEYMVNVAERTLNEVDVVLWLVEPTTFIGAGEQHIISQLKKVTTPVVLVINKIDSV 128 Query: 124 -----RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 A + ++Y DF EIV +SA + T EL VI K Sbjct: 129 KKEDVLPAIAAYKDVY--DFAEIVPVSARNGDNTDELVKVIMK 169 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 43/168 (25%), Positives = 82/168 (48%), Gaps = 8/168 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 + ++GRPNVGKSTL+N+L+G +T ++ TR+ + + I DT G+ K Sbjct: 10 VTLIGRPNVGKSTLMNQLIGQKIAITSNKPQTTRNRIQTVLTTDDGQIVFVDTPGIHKAK 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + V + +++ + + L++ T + I+ + VVL +NK D Sbjct: 70 N---KLGEYMVNVAERTLNEVDVVLWLVEPTTFIGAGEQHIISQLKKVTTPVVLVINKID 126 Query: 326 MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 V K ++L + A K++ +I +S R G+ D+L+ +++ Sbjct: 127 SVK-KEDVLPAI--AAYKDVYDFAEIV--PVSARNGDNTDELVKVIMK 169 >gi|242310493|ref|ZP_04809648.1| tRNA modification GTPase TrmE [Helicobacter pullorum MIT 98-5489] gi|239522891|gb|EEQ62757.1| tRNA modification GTPase TrmE [Helicobacter pullorum MIT 98-5489] Length = 461 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 40/131 (30%), Positives = 78/131 (59%), Gaps = 5/131 (3%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K++ + ++ ++G+PNVGKS+ +N LL R + +G TRDS+ ++ + H + + D Sbjct: 215 KSLFEGYKLCIIGKPNVGKSSFLNALLHNERAIVSDIAGTTRDSIEENFVLEGHLLRLID 274 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSV--FNTGH 315 TAG+RK I +E K +++S+Q + + I L D++ P + +DL I++ + + Sbjct: 275 TAGIRKSQDI---IENKGIERSLQKAKESDILIALFDSSRPLDHEDLEIIELLKNYQDSK 331 Query: 316 AVVLALNKWDM 326 +++ LNK D+ Sbjct: 332 KIIVLLNKTDL 342 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 37/124 (29%), Positives = 65/124 (52%), Gaps = 3/124 (2%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 Y + I+G PNVGKS+ N L+ + A+V + G TRD + ++ G + ++DTAGI Sbjct: 221 YKLCIIGKPNVGKSSFLNALLHNERAIVSDIAGTTRDSIEENFVLEGHLLRLIDTAGIRK 280 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLR--KKNIPIIIVSNK 120 ++ K + + A E+ +++ L DS + D I L+ + + II++ NK Sbjct: 281 SQDIIENKGIERSLQKA-KESDILIALFDSSRPLDHEDLEIIELLKNYQDSKKIIVLLNK 339 Query: 121 MDTR 124 D + Sbjct: 340 TDLQ 343 >gi|57242376|ref|ZP_00370315.1| tRNA modification GTPase TrmE [Campylobacter upsaliensis RM3195] gi|57017056|gb|EAL53838.1| tRNA modification GTPase TrmE [Campylobacter upsaliensis RM3195] Length = 442 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 44/131 (33%), Positives = 75/131 (57%), Gaps = 3/131 (2%) Query: 196 SVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEI 255 S K + + +IA++G+PN GKS+L+N LL Y R + +G TRD + S H ++I Sbjct: 207 SKKALLEGFKIAIIGKPNAGKSSLLNALLAYERAIVSPLAGTTRDFIEESLKIGTHLVKI 266 Query: 256 FDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGH 315 DTAG+R+ E LE+ ++ S +S+ + + L D++ F+ +D I++ + N+ Sbjct: 267 MDTAGIRESE---EELEKIGIELSKKSLNEADIILALFDSSRKFDDEDKEILNLLRNSKK 323 Query: 316 AVVLALNKWDM 326 V LNK D+ Sbjct: 324 KVFYLLNKCDL 334 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 48/149 (32%), Positives = 76/149 (51%), Gaps = 7/149 (4%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + IAI+G PN GKS+L N L+ + A+V G TRD + I + I+DTAGI + Sbjct: 215 FKIAIIGKPNAGKSSLLNALLAYERAIVSPLAGTTRDFIEESLKIGTHLVKIMDTAGIRE 274 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + + K + ++ ++NEA +IL L DS D I + LR + + NK D Sbjct: 275 SEE-ELEKIGIELSKKSLNEADIILALFDSSRKFDDEDKEILNLLRNSKKKVFYLLNKCD 333 Query: 123 TRIAQRNFYEIYSLDFKEIVEISAEHDLG 151 + N EI ++++ISA+ D+ Sbjct: 334 LKPQFENLNEI------DLIKISAKEDIA 356 >gi|114320504|ref|YP_742187.1| GTP-binding protein Era [Alkalilimnicola ehrlichii MLHE-1] gi|114226898|gb|ABI56697.1| GTP-binding protein Era [Alkalilimnicola ehrlichii MLHE-1] Length = 315 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 53/179 (29%), Positives = 93/179 (51%), Gaps = 6/179 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTL N+L+ +K+++V P TR R+ G +G VDT G+ + Sbjct: 27 VALVGRPNVGKSTLLNQLLGQKISIVTRKPQTTRQRILGVCHRDGAQIVYVDTPGLHQRR 86 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 + ++ + +N A+ + L++FL+D + P D A+ L+++++P+I+ NK+D Sbjct: 87 DKALNRYLNRTAANALADVDLVVFLVD-RLHFKPEDEAVLERLKRRDVPVILAINKVDRL 145 Query: 124 RIAQRNFYEIYSLD----FKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 R + I L F E+V +SA + L I + + P P + I + Sbjct: 146 RDKAQLLPHIQWLSEQHPFVEVVPLSALKGENLAPLEEAILRQLPESPPLFPEDYITDR 204 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 76/148 (51%), Gaps = 7/148 (4%) Query: 191 SEGKSSVKNISKPL----RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISW 246 +EG+ + + PL +A+VGRPNVGKSTL+N+LLG + + TR + Sbjct: 8 AEGQPAGLSDELPLIRCGHVALVGRPNVGKSTLLNQLLGQKISIVTRKPQTTRQRILGVC 67 Query: 247 NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRI 306 + I DT G+ + R ++L + + + ++ + + L+D + F+ +D + Sbjct: 68 HRDGAQIVYVDTPGLHQ--RRDKALNRYLNRTAANALADVDLVVFLVD-RLHFKPEDEAV 124 Query: 307 VDSVFNTGHAVVLALNKWDMVSDKLNLL 334 ++ + V+LA+NK D + DK LL Sbjct: 125 LERLKRRDVPVILAINKVDRLRDKAQLL 152 >gi|307638103|gb|ADN80553.1| GTPase and tRNA-U345-formylation enzyme [Helicobacter pylori 908] gi|325996704|gb|ADZ52109.1| tRNA modification GTPase [Helicobacter pylori 2018] gi|325998296|gb|ADZ50504.1| tRNA modification GTPase [Helicobacter pylori 2017] Length = 450 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 38/122 (31%), Positives = 72/122 (59%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +++VG+PN GKS+L+N +L R L G TRD++ K H + + DTAG+R+ + Sbjct: 216 LSIVGKPNAGKSSLLNAMLLEERALVSDIKGTTRDTIEEVIELKGHKVRLIDTAGIRESA 275 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + +E+ ++KS++S+ C+ + + D + P EK+D ++D++ ++ LNK D Sbjct: 276 ---DEIERLGIEKSLKSLENCDIILGVFDLSKPLEKEDFNLIDTLNRAKKPCIVVLNKND 332 Query: 326 MV 327 + Sbjct: 333 LA 334 Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 62/120 (51%), Gaps = 1/120 (0%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + ++IVG PN GKS+L N ++ ++ A+V + G TRD + + G ++DTAGI + Sbjct: 214 HALSIVGKPNAGKSSLLNAMLLEERALVSDIKGTTRDTIEEVIELKGHKVRLIDTAGIRE 273 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + I + +++ ++ +IL + D + D + L + P I+V NK D Sbjct: 274 SAD-EIERLGIEKSLKSLENCDIILGVFDLSKPLEKEDFNLIDTLNRAKKPCIVVLNKND 332 >gi|157164829|ref|YP_001466649.1| tRNA modification GTPase TrmE [Campylobacter concisus 13826] gi|205829127|sp|A7ZCZ1|MNME_CAMC1 RecName: Full=tRNA modification GTPase mnmE gi|112800067|gb|EAT97411.1| tRNA modification GTPase TrmE [Campylobacter concisus 13826] Length = 441 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 39/124 (31%), Positives = 70/124 (56%), Gaps = 3/124 (2%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 +IA+VG+PNVGKS+++N L Y R + ++G TRD + ++ +H + I DTAG+RK Sbjct: 215 FKIAIVGKPNVGKSSILNSFLAYERAIVSDEAGTTRDRIEENFKIGSHLVRIIDTAGIRK 274 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 + +EQ + S+ ++ + + + D + P ++QD I+ + N+ LNK Sbjct: 275 DAG---KIEQIGINYSISAINEADIILAVFDGSCPSDEQDKEIIRLISNSNKKAFFILNK 331 Query: 324 WDMV 327 D+ Sbjct: 332 SDLA 335 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 46/148 (31%), Positives = 71/148 (47%), Gaps = 10/148 (6%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + IAIVG PNVGKS++ N + + A+V + G TRDR+ I + I+DTAGI Sbjct: 215 FKIAIVGKPNVGKSSILNSFLAYERAIVSDEAGTTRDRIEENFKIGSHLVRIIDTAGIR- 273 Query: 63 GKNCSIAKQMNDQTEL-AINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 K+ +Q+ + AINEA +IL + D D I + N + NK Sbjct: 274 -KDAGKIEQIGINYSISAINEADIILAVFDGSCPSDEQDKEIIRLISNSNKKAFFILNKS 332 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHD 149 D + ++ ++ISA++D Sbjct: 333 DLAFK-------FDIELDGAIKISAKND 353 >gi|94987514|ref|YP_595447.1| tRNA modification GTPase TrmE [Lawsonia intracellularis PHE/MN1-00] gi|205415772|sp|Q1MPF1|MNME_LAWIP RecName: Full=tRNA modification GTPase mnmE gi|94731763|emb|CAJ55126.1| predicted GTPase [Lawsonia intracellularis PHE/MN1-00] Length = 459 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 69/229 (30%), Positives = 118/229 (51%), Gaps = 12/229 (5%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+A+ GA N GKS+L N L+ K+ A+V HPG TRD L I+N + ++DTAG+ Sbjct: 221 TVALAGAVNAGKSSLLNALLGKERAIVTEHPGTTRDFLEECIIVNSLSIRLIDTAGLRVT 280 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDH-AITSFLRKKNIPIIIVSNKMD 122 + I +Q + I+EA +ILF+ID G+T I +F ++ I+V NK+D Sbjct: 281 SD-PIEEQGIQKGREKIDEADVILFIIDGTVGVTEESKLLINNFGVERT---ILVWNKVD 336 Query: 123 TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK-IFKQKYPNHP-LEMIENNKR 180 ++ N+ E+Y+ + +SA+ G EL +++ + Q P + I N R Sbjct: 337 LKVPPSNWTELYTSSQVSGICVSAKTGSGIEELLVLLYNFVLSQHNAQEPTFDTIVPNMR 396 Query: 181 NEESPKENITSEGKSSVKNISK--PLRIAVVGRPNVGKSTLINRLLGYN 227 E + E +S ++I P + V N+ S+++N ++G++ Sbjct: 397 QVEV-FSLVLEEIRSLYEDIRSGIPYDLCAVMLENI--SSMLNSIIGFD 442 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/165 (24%), Positives = 79/165 (47%), Gaps = 16/165 (9%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+ G N GKS+L+N LLG R + G TRD + + I + DTAG+R S Sbjct: 222 VALAGAVNAGKSSLLNALLGKERAIVTEHPGTTRDFLEECIIVNSLSIRLIDTAGLRVTS 281 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTG-HAVVLALNKW 324 + +E++ ++K + + + + ++D T+ ++ +++ N G +L NK Sbjct: 282 ---DPIEEQGIQKGREKIDEADVILFIIDGTVGVTEESKLLIN---NFGVERTILVWNKV 335 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMV 369 D+ N + + + + +S +TG G+++L+V Sbjct: 336 DLKVPPSNWTELYTSSQVSGI---------CVSAKTGSGIEELLV 371 >gi|15646061|ref|NP_208243.1| tRNA modification GTPase TrmE [Helicobacter pylori 26695] gi|14195258|sp|O25991|MNME_HELPY RecName: Full=tRNA modification GTPase mnmE gi|2314627|gb|AAD08492.1| thiophene and furan oxidizer (tdhF) [Helicobacter pylori 26695] Length = 461 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 38/122 (31%), Positives = 72/122 (59%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +++VG+PN GKS+L+N +L R L G TRD++ K H + + DTAG+R+ + Sbjct: 227 LSIVGKPNAGKSSLLNAMLLEERALVSDIKGTTRDTIEEVIELKGHKVRLIDTAGIRESA 286 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + +E+ ++KS++S+ C+ + + D + P EK+D ++D++ ++ LNK D Sbjct: 287 ---DKIERLGIEKSLKSLENCDIILGVFDLSKPLEKEDFNLIDTLNRAKKPCIVVLNKND 343 Query: 326 MV 327 + Sbjct: 344 LA 345 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 62/120 (51%), Gaps = 1/120 (0%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + ++IVG PN GKS+L N ++ ++ A+V + G TRD + + G ++DTAGI + Sbjct: 225 HALSIVGKPNAGKSSLLNAMLLEERALVSDIKGTTRDTIEEVIELKGHKVRLIDTAGIRE 284 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + I + +++ ++ +IL + D + D + L + P I+V NK D Sbjct: 285 SAD-KIERLGIEKSLKSLENCDIILGVFDLSKPLEKEDFNLIDTLNRAKKPCIVVLNKND 343 >gi|17232169|ref|NP_488717.1| tRNA modification GTPase TrmE [Nostoc sp. PCC 7120] gi|21363007|sp|Q8YN91|MNME_ANASP RecName: Full=tRNA modification GTPase mnmE gi|17133814|dbj|BAB76376.1| thiophen / furan oxidation protein [Nostoc sp. PCC 7120] Length = 459 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 90/164 (54%), Gaps = 11/164 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKS+L N + A+V + PG TRD + Q ++ G+ ++DTAGI + Sbjct: 224 VAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETS 283 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + K +++ A N A L+L ID+ G T D I + + K+ P+I+V NK+D Sbjct: 284 D-QVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEI--YEQVKHRPLILVMNKID-- 338 Query: 125 IAQRNFYEIYSLDFKE----IVEISAEHDLGTSELHSVIFKIFK 164 + ++ I SL++ E IV +A G L + I +I + Sbjct: 339 LVEKQL--ITSLEYPENITQIVHTAAAQKQGIDSLETAILEIVQ 380 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 54/178 (30%), Positives = 97/178 (54%), Gaps = 14/178 (7%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 L++A+VGRPNVGKS+L+N +R + G TRD V P+++ DTAG+R+ Sbjct: 222 LKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRE 281 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 S + +E+ V++S Q+ T + ++ +DA + D I + V + ++L +NK Sbjct: 282 TS---DQVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVKH--RPLILVMNK 336 Query: 324 WDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTR 381 D+V + L+ L +N+ QI ++T + + +G+D L ++LEI + K + Sbjct: 337 IDLVEKQ--LITSLEYP--ENITQI----VHTAAAQK-QGIDSLETAILEIVQTGKVQ 385 >gi|167748063|ref|ZP_02420190.1| hypothetical protein ANACAC_02807 [Anaerostipes caccae DSM 14662] gi|167652055|gb|EDR96184.1| hypothetical protein ANACAC_02807 [Anaerostipes caccae DSM 14662] Length = 472 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 50/158 (31%), Positives = 90/158 (56%), Gaps = 4/158 (2%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AIVG PN GKS++ N L+ ++ A+V + G TRD L ING+ N++DTAGI D + Sbjct: 239 AIVGKPNAGKSSILNVLLGEERAIVTDIAGTTRDTLEESIQINGIPLNVIDTAGIRDTDD 298 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 + K D+ ++ +A L+L+++D+ +T D I L K + +++ + ++T++ Sbjct: 299 V-VEKIGVDKARDSVIKADLVLYVVDTSVPLTKEDEEIMKLLNGKQVIVLLNKSDLETKV 357 Query: 126 AQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 ++ F + F+ IV +SA+ G +L+ I +F Sbjct: 358 SESEFLD---RGFQNIVPVSAKSLYGLEDLYERINDLF 392 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 41/127 (32%), Positives = 71/127 (55%), Gaps = 5/127 (3%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + + A+VG+PN GKS+++N LLG R + +G TRD++ S P+ + DTA Sbjct: 232 LKEGIHTAIVGKPNAGKSSILNVLLGEERAIVTDIAGTTRDTLEESIQINGIPLNVIDTA 291 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R + E + V K+ SV + + ++D ++P K+D I+ + N G V++ Sbjct: 292 GIRDTDDVVEKI---GVDKARDSVIKADLVLYVVDTSVPLTKEDEEIM-KLLN-GKQVIV 346 Query: 320 ALNKWDM 326 LNK D+ Sbjct: 347 LLNKSDL 353 >gi|262273709|ref|ZP_06051522.1| GTP-binding protein Era [Grimontia hollisae CIP 101886] gi|262222124|gb|EEY73436.1| GTP-binding protein Era [Grimontia hollisae CIP 101886] Length = 304 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 57/170 (33%), Positives = 92/170 (54%), Gaps = 10/170 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL NRLV +K+++ P TR R+ G +G VDT G+ + Sbjct: 13 IAIVGRPNVGKSTLLNRLVGQKLSITSRKPQTTRHRIMGVDTRDGYQAVYVDTPGLHIEE 72 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN ++ + L+LFL+D T D + + L+K +P +++ NK+D Sbjct: 73 KRTINRLMNRAASSSLTDVELVLFLVDG-THWTQDDEMVLNKLKKAQLPTVLLVNKVDNV 131 Query: 125 IAQRNFY----EI-YSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPN 169 + + EI +DF ++V +SA+H GT+ V+ K+ ++ P Sbjct: 132 KEKGELFPHLQEISQKMDFIDVVPVSAKH--GTN--IDVVEKLVRKHLPE 177 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 5/134 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMR-KP 264 IA+VGRPNVGKSTL+NRL+G +T + TR + + DT G+ + Sbjct: 13 IAIVGRPNVGKSTLLNRLVGQKLSITSRKPQTTRHRIMGVDTRDGYQAVYVDTPGLHIEE 72 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 R L + S+ V E + L+D T + + D +++ + VL +NK Sbjct: 73 KRTINRLMNRAASSSLTDV---ELVLFLVDGT-HWTQDDEMVLNKLKKAQLPTVLLVNKV 128 Query: 325 DMVSDKLNLLQDLR 338 D V +K L L+ Sbjct: 129 DNVKEKGELFPHLQ 142 >gi|154249072|ref|YP_001409897.1| tRNA modification GTPase TrmE [Fervidobacterium nodosum Rt17-B1] gi|205829140|sp|A7HK07|MNME_FERNB RecName: Full=tRNA modification GTPase mnmE gi|154153008|gb|ABS60240.1| tRNA modification GTPase TrmE [Fervidobacterium nodosum Rt17-B1] Length = 459 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 70/165 (42%), Positives = 91/165 (55%), Gaps = 15/165 (9%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AIVG PNVGKSTL NRL+ + A+V + PG TRD + G+ I GV F I DTAGI Sbjct: 228 TMAIVGKPNVGKSTLLNRLLVEDRAIVTDIPGTTRDVIKGELKIKGVHFIISDTAGI--- 284 Query: 64 KNCSIAKQMNDQTELAINEA---HLILFLIDSKAGITPYDHAITSFLRKKN-IPIIIVSN 119 + K E A+NEA +ILFL+D+ G T D I + ++ N IP V N Sbjct: 285 -RMTEDKVEKIGIEKALNEAKKSDVILFLLDATTGFTNEDEYIYNLIKDCNFIP---VWN 340 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFK 164 K+D IA++ +I L + V ISAE G EL I + K Sbjct: 341 KID--IAEKVDKDIVFL--RNSVVISAETGRGMRELEEKILESVK 381 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 69/254 (27%), Positives = 115/254 (45%), Gaps = 30/254 (11%) Query: 188 NITSEGKSSVKNISKPLRI------AVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS 241 N+ S K +K+ K L I A+VG+PNVGKSTL+NRLL +R + G TRD Sbjct: 205 NVQSFLKEKIKHADKGLHISTGVTMAIVGKPNVGKSTLLNRLLVEDRAIVTDIPGTTRDV 264 Query: 242 VSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 + K I DTAG+R + +E+ ++K++ + + + LLDAT F Sbjct: 265 IKGELKIKGVHFIISDTAGIRMTE---DKVEKIGIEKALNEAKKSDVILFLLDATTGFTN 321 Query: 302 QDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTG 361 +D I + + + V W+ + D+ K K++ + + + IS TG Sbjct: 322 EDEYIYNLIKDCNFIPV-----WNKI--------DIAEKVDKDIVFLRNSVV--ISAETG 366 Query: 362 EGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPP 421 G+ +L +LE K+ S++ S Q L+ YN +K I ++ + P Sbjct: 367 RGMRELEEKILESVKVLVEDGELSHVTSKRQLEYLKRV------EYNIIKAINSLKKNMP 420 Query: 422 SFLIFCTFPNKIPE 435 +I N + + Sbjct: 421 LDIISIDIRNGLEQ 434 >gi|262118592|pdb|3GEH|A Chain A, Crystal Structure Of Mnme From Nostoc In Complex With Gdp, Folinic Acid And Zn Length = 462 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 90/164 (54%), Gaps = 11/164 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKS+L N + A+V + PG TRD + Q ++ G+ ++DTAGI + Sbjct: 227 VAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETS 286 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + K +++ A N A L+L ID+ G T D I + + K+ P+I+V NK+D Sbjct: 287 D-QVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEI--YEQVKHRPLILVMNKID-- 341 Query: 125 IAQRNFYEIYSLDFKE----IVEISAEHDLGTSELHSVIFKIFK 164 + ++ I SL++ E IV +A G L + I +I + Sbjct: 342 LVEKQL--ITSLEYPENITQIVHTAAAQKQGIDSLETAILEIVQ 383 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 54/178 (30%), Positives = 97/178 (54%), Gaps = 14/178 (7%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 L++A+VGRPNVGKS+L+N +R + G TRD V P+++ DTAG+R+ Sbjct: 225 LKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRE 284 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 S + +E+ V++S Q+ T + ++ +DA + D I + V + ++L +NK Sbjct: 285 TS---DQVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVKH--RPLILVMNK 339 Query: 324 WDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTR 381 D+V + L+ L +N+ QI ++T + + +G+D L ++LEI + K + Sbjct: 340 IDLVEKQ--LITSLEYP--ENITQI----VHTAAAQK-QGIDSLETAILEIVQTGKVQ 388 >gi|269122893|ref|YP_003305470.1| tRNA modification GTPase TrmE [Streptobacillus moniliformis DSM 12112] gi|268314219|gb|ACZ00593.1| tRNA modification GTPase TrmE [Streptobacillus moniliformis DSM 12112] Length = 455 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 42/120 (35%), Positives = 72/120 (60%), Gaps = 3/120 (2%) Query: 207 AVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSR 266 +VG+PNVGKSTL+N LL R + S G TRD + N K P+ + DTAG+R+ Sbjct: 222 VIVGKPNVGKSTLLNTLLQEERAIVTSVPGTTRDVIEEIINIKGIPLVLVDTAGIRETDD 281 Query: 267 ITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 I E++ VKKS++ + + +++LD++ E++D+R+++ + ++ LNK D+ Sbjct: 282 IVENI---GVKKSLEFIEMADLVLLVLDSSKEIEEEDIRVIEKILELEKQYIVLLNKIDL 338 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 60/200 (30%), Positives = 102/200 (51%), Gaps = 19/200 (9%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG-- 63 IVG PNVGKSTL N L++++ A+V + PG TRD + I G+ +VDTAGI + Sbjct: 222 VIVGKPNVGKSTLLNTLLQEERAIVTSVPGTTRDVIEEIINIKGIPLVLVDTAGIRETDD 281 Query: 64 --KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 +N + K + I A L+L ++DS I D + + + I++ NK+ Sbjct: 282 IVENIGVKKSLE-----FIEMADLVLLVLDSSKEIEEEDIRVIEKILELEKQYIVLLNKI 336 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLE-MIENNKR 180 D +R +I + IVEISA++++ ++ + I++ + E +I N R Sbjct: 337 D---LERKL-DISKYNLNNIVEISAQNNINMDKMENEIYEFITDNEIDDSSERLILTNIR 392 Query: 181 NEESPKENITSEGKSSVKNI 200 ++ + ++ K S+KNI Sbjct: 393 HKTALEKT-----KESIKNI 407 >gi|118582021|ref|YP_903271.1| tRNA modification GTPase TrmE [Pelobacter propionicus DSM 2379] gi|205415790|sp|A1AV43|MNME_PELPD RecName: Full=tRNA modification GTPase mnmE gi|118504731|gb|ABL01214.1| tRNA modification GTPase trmE [Pelobacter propionicus DSM 2379] Length = 456 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 67/251 (26%), Positives = 126/251 (50%), Gaps = 35/251 (13%) Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + +RIA+ +++L E E DLG +++ S+ + + H ++E+ Sbjct: 156 LSSRIAEARQLLLHALALIEAYIDFPEDDLGETDVESIRSSV--EGARTHIRRLLED--- 210 Query: 181 NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 +EG+ + IS + ++G+PN GKS+L+NRLL NR + G TRD Sbjct: 211 ---------FNEGRLLREGIS----VLIIGKPNAGKSSLLNRLLNENRAIVTHLPGTTRD 257 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 + + N + + DTAG+R + +EQ+ + ++++ + + + +LD + PF Sbjct: 258 IIEETINLGGLAVRLLDTAGIRHTEDV---IEQEGINRALEKIPQADLILFVLDGSRPFG 314 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 +D I+D++ G+ V A++K D L + +L ++ NLPQ+ + S + Sbjct: 315 PEDRLILDAL--QGNRFVAAISKAD-----LPRVLELPSECC-NLPQV------SFSAES 360 Query: 361 GEGLDDLMVSV 371 GEG+DDL +V Sbjct: 361 GEGVDDLKSTV 371 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 48/164 (29%), Positives = 78/164 (47%), Gaps = 14/164 (8%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 ++ I+G PN GKS+L NRL+ + A+V + PG TRD + + G+ ++DTAGI Sbjct: 222 SVLIIGKPNAGKSSLLNRLLNENRAIVTHLPGTTRDIIEETINLGGLAVRLLDTAGIRHT 281 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 ++ + +N E I +A LILF++D P D I L+ N+ Sbjct: 282 EDVIEQEGINRALE-KIPQADLILFVLDGSRPFGPEDRLILDALQ---------GNRFVA 331 Query: 124 RIAQRNFYEIYSLDFKEI----VEISAEHDLGTSELHSVIFKIF 163 I++ + + L + V SAE G +L S + +F Sbjct: 332 AISKADLPRVLELPSECCNLPQVSFSAESGEGVDDLKSTVRSLF 375 >gi|15606214|ref|NP_213591.1| tRNA modification GTPase TrmE [Aquifex aeolicus VF5] gi|6647876|sp|O67030|MNME_AQUAE RecName: Full=tRNA modification GTPase mnmE gi|2983408|gb|AAC06992.1| thiophene and furan oxidation protein [Aquifex aeolicus VF5] Length = 448 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 59/157 (37%), Positives = 91/157 (57%), Gaps = 7/157 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKS+LFN L+K++ A+V + G TRD + I GV +VDTAGI + K Sbjct: 218 LAIVGRPNVGKSSLFNALLKEERAIVTDIAGTTRDFIEETLQIKGVPVRLVDTAGIRETK 277 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + + ++++ + EA LILF+ID+ IT D I +++K+ I+V+NK+D Sbjct: 278 DL-VERIGVERSKQKVKEADLILFVIDASQEITEEDLRIYEEIKEKD--HIVVANKVDLG 334 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 I + ++IV++SA G EL I K Sbjct: 335 IRAN----LEKFKGEKIVKVSALKGTGLEELSEEILK 367 Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 55/175 (31%), Positives = 90/175 (51%), Gaps = 18/175 (10%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K I + +++A+VGRPNVGKS+L N LL R + +G TRD + + K P+ + D Sbjct: 210 KFIREGVKLAIVGRPNVGKSSLFNALLKEERAIVTDIAGTTRDFIEETLQIKGVPVRLVD 269 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ + E + V++S Q V+ + + ++DA+ ++DLRI + + H V Sbjct: 270 TAGIRETKDLVERI---GVERSKQKVKEADLILFVIDASQEITEEDLRIYEEIKEKDHIV 326 Query: 318 VLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVL 372 V NK D+ +R NL + I +S G GL++L +L Sbjct: 327 V--ANKVDL---------GIRA----NLEKFKGEKIVKVSALKGTGLEELSEEIL 366 >gi|317013217|gb|ADU83825.1| tRNA modification GTPase TrmE [Helicobacter pylori Lithuania75] Length = 450 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 38/122 (31%), Positives = 72/122 (59%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +++VG+PN GKS+L+N +L R L G TRD++ + H + + DTAG+R+ Sbjct: 216 LSIVGKPNAGKSSLLNAMLLEERALVSDIKGTTRDTIEEIIELQGHKVRLIDTAGIRES- 274 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 T+ +E+ ++KS++S+ C+ + + D + P EK+D ++D++ ++ LNK D Sbjct: 275 --TDKIERLGIEKSLKSLENCDIILGVFDLSKPLEKEDFNLIDTLNRAKKPCIVVLNKND 332 Query: 326 MV 327 + Sbjct: 333 LA 334 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 62/120 (51%), Gaps = 1/120 (0%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + ++IVG PN GKS+L N ++ ++ A+V + G TRD + + G ++DTAGI + Sbjct: 214 HALSIVGKPNAGKSSLLNAMLLEERALVSDIKGTTRDTIEEIIELQGHKVRLIDTAGIRE 273 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + I + +++ ++ +IL + D + D + L + P I+V NK D Sbjct: 274 STD-KIERLGIEKSLKSLENCDIILGVFDLSKPLEKEDFNLIDTLNRAKKPCIVVLNKND 332 >gi|56750048|ref|YP_170749.1| tRNA modification GTPase TrmE [Synechococcus elongatus PCC 6301] gi|56685007|dbj|BAD78229.1| thiophen and furan oxidation protein [Synechococcus elongatus PCC 6301] Length = 482 Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 55/158 (34%), Positives = 86/158 (54%), Gaps = 6/158 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKS+L N + A+V + PG TRD + Q I+ G+ ++DTAGI + Sbjct: 246 IAIVGRPNVGKSSLLNAWSRCDRAIVTDLPGRTRDLVESQLIVGGIPVQVLDTAGIRETS 305 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + + +++ A A L+L ID+ AG + D I + + PI++V NK D R Sbjct: 306 D-QVEQIGVERSRRAAQSADLVLLTIDASAGWSAEDQTIWEAVSDR--PILLVINKRD-R 361 Query: 125 I--AQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 + A+R+ + +FK IV +A G +L + I Sbjct: 362 LSEAERHAIALPQQEFKAIVWTAAAQQKGIEDLEAAIL 399 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 48/167 (28%), Positives = 87/167 (52%), Gaps = 6/167 (3%) Query: 163 FKQKYPNHPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINR 222 F+ P LE I + + I S + + L+IA+VGRPNVGKS+L+N Sbjct: 204 FEDDLPPLDLEAIAAQLTAAGADMQAILSTADRG-ELLRTGLKIAIVGRPNVGKSSLLNA 262 Query: 223 LLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQS 282 +R + G TRD V P+++ DTAG+R+ S + +EQ V++S ++ Sbjct: 263 WSRCDRAIVTDLPGRTRDLVESQLIVGGIPVQVLDTAGIRETS---DQVEQIGVERSRRA 319 Query: 283 VRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSD 329 ++ + ++ +DA+ + +D I ++V + ++L +NK D +S+ Sbjct: 320 AQSADLVLLTIDASAGWSAEDQTIWEAVSD--RPILLVINKRDRLSE 364 >gi|238924233|ref|YP_002937749.1| GTP-binding protein Era [Eubacterium rectale ATCC 33656] gi|238875908|gb|ACR75615.1| GTP-binding protein Era [Eubacterium rectale ATCC 33656] Length = 303 Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 90/164 (54%), Gaps = 10/164 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRL---YGQAIINGVIFNIVDTAGIA 61 + I+G PNVGKSTL NRL+ +K+A+ N P TR+R+ Y ++F +DT GI Sbjct: 10 VTIIGRPNVGKSTLMNRLIGQKIAITSNKPQTTRNRIQTVYTDMEKGQIVF--LDTPGIH 67 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 KN + + M + E +NE ++L+L++ I + I L+K N P+I++ NK+ Sbjct: 68 KAKN-KLGEYMVNVAEKTLNEVDVVLWLVEPTNFIGAGEQHIIEQLKKVNTPVILIINKV 126 Query: 122 DTRIAQR--NFYEIYS--LDFKEIVEISAEHDLGTSELHSVIFK 161 DT ++ + + Y DF EI+ SA T ++ + IFK Sbjct: 127 DTVEKEKVLEYIDTYRKVFDFAEIIPTSALRGQNTDDVINSIFK 170 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 33/124 (26%), Positives = 62/124 (50%), Gaps = 4/124 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISW-NWKNHPIEIFDTAGMRKP 264 + ++GRPNVGKSTL+NRL+G +T ++ TR+ + + + + I DT G+ K Sbjct: 10 VTIIGRPNVGKSTLMNRLIGQKIAITSNKPQTTRNRIQTVYTDMEKGQIVFLDTPGIHKA 69 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 L + V + +++ + + L++ T + I++ + V+L +NK Sbjct: 70 KN---KLGEYMVNVAEKTLNEVDVVLWLVEPTNFIGAGEQHIIEQLKKVNTPVILIINKV 126 Query: 325 DMVS 328 D V Sbjct: 127 DTVE 130 >gi|160878804|ref|YP_001557772.1| GTP-binding protein Era [Clostridium phytofermentans ISDg] gi|160427470|gb|ABX41033.1| GTP-binding protein Era [Clostridium phytofermentans ISDg] Length = 305 Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 67/197 (34%), Positives = 100/197 (50%), Gaps = 25/197 (12%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRL-------YGQAIINGVIFNIVDTAG 59 ++G PNVGKSTL N+L+ +K+A+ + P TR+R+ GQ +IF +DT G Sbjct: 15 LIGRPNVGKSTLMNQLIGQKIAITSDKPQTTRNRIQTVYTEEQGQ-----IIF--LDTPG 67 Query: 60 IADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 I KN + + M + E INE +IL+L++ I + I L K P+I+V N Sbjct: 68 IHQAKN-KLGQFMVNIAERTINEVDVILWLVEPSTFIGAGEQHIIEKLNKSKTPVILVIN 126 Query: 120 KMDTRIAQR--NFYEIY--SLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 K+DT Q F + Y +F EIV +SA +L VIFK PN P+ Sbjct: 127 KIDTVKKQEILTFIDAYRDKCNFAEIVPVSALKGENKQQLIDVIFKYL----PNGPMYFD 182 Query: 176 ENNKRNEESPKENITSE 192 E+ ++ P+ I +E Sbjct: 183 EDTVTDQ--PERQIVAE 197 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 40/167 (23%), Positives = 79/167 (47%), Gaps = 9/167 (5%) Query: 208 VVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRI 267 ++GRPNVGKSTL+N+L+G +T + TR+ + + + I DT G+ + Sbjct: 15 LIGRPNVGKSTLMNQLIGQKIAITSDKPQTTRNRIQTVYTEEQGQIIFLDTPGIHQAKN- 73 Query: 268 TESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMV 327 L Q V + +++ + + L++ + + I++ + + V+L +NK D V Sbjct: 74 --KLGQFMVNIAERTINEVDVILWLVEPSTFIGAGEQHIIEKLNKSKTPVILVINKIDTV 131 Query: 328 SDK--LNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVL 372 + L + R K N +I + ++ + G + L D++ L Sbjct: 132 KKQEILTFIDAYRDKC--NFAEI--VPVSALKGENKQQLIDVIFKYL 174 >gi|297380695|gb|ADI35582.1| tRNA modification GTPase TrmE [Helicobacter pylori v225d] Length = 461 Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 72/122 (59%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +++VG+PN GKS+L+N +L R L G TRD++ + H + + DTAG+R+ + Sbjct: 227 LSIVGKPNAGKSSLLNAMLLEERALVSDIKGTTRDTIEEVIELQGHKVRLIDTAGIRESA 286 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + +E+ ++KS++S+ C+ + + D + P EK+D ++D++ ++ LNK D Sbjct: 287 ---DKIERLGIEKSLKSLENCDIVLGVFDLSKPLEKEDFNLIDALNRAKKPCIVVLNKND 343 Query: 326 MV 327 + Sbjct: 344 LA 345 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 33/120 (27%), Positives = 62/120 (51%), Gaps = 1/120 (0%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + ++IVG PN GKS+L N ++ ++ A+V + G TRD + + G ++DTAGI + Sbjct: 225 HALSIVGKPNAGKSSLLNAMLLEERALVSDIKGTTRDTIEEVIELQGHKVRLIDTAGIRE 284 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + I + +++ ++ ++L + D + D + L + P I+V NK D Sbjct: 285 SAD-KIERLGIEKSLKSLENCDIVLGVFDLSKPLEKEDFNLIDALNRAKKPCIVVLNKND 343 >gi|257867661|ref|ZP_05647314.1| GTP-binding protein engA [Enterococcus casseliflavus EC30] gi|257801744|gb|EEV30647.1| GTP-binding protein engA [Enterococcus casseliflavus EC30] Length = 189 Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 47/182 (25%), Positives = 89/182 (48%) Query: 278 KSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDL 337 ++M+++ + +++L+A +QD RI G +++ +NKWD + + N ++D Sbjct: 3 RAMRAIERSDVVLMVLNAEEGIREQDKRIAGYAHEAGRGIIIVVNKWDTLKKETNTMRDF 62 Query: 338 RTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQ 397 + + I +S T + L+ L + E++ RI ++ LN + Sbjct: 63 EEEIRDEFQYLDYAPIIFVSAVTKQRLNKLPQLIEEVSMNQNMRIPSALLNDVIMDAVAI 122 Query: 398 NPPPTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIR 457 NP PT + ++ Y TQ+ PP+F+IF + SY R+L N++R F+ G PIR Sbjct: 123 NPTPTDKGKRLKIFYATQVAVKPPTFVIFVNEEELMHFSYARFLENQIRKAFTFEGTPIR 182 Query: 458 MC 459 + Sbjct: 183 II 184 >gi|72383392|ref|YP_292747.1| tRNA modification GTPase TrmE [Prochlorococcus marinus str. NATL2A] gi|123620473|sp|Q46HI4|MNME_PROMT RecName: Full=tRNA modification GTPase mnmE gi|72003242|gb|AAZ59044.1| tRNA modification GTPase trmE [Prochlorococcus marinus str. NATL2A] Length = 464 Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 60/159 (37%), Positives = 91/159 (57%), Gaps = 5/159 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+ G PNVGKS+L NRL K++ A+V + PG TRD L + I+ G+ +DTAG+ D K Sbjct: 229 VALTGKPNVGKSSLMNRLSKQEKAIVTDLPGTTRDILESEIILEGIPVTFIDTAGLRDTK 288 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + I K +T+ + A LI+ + D +G T D +I L NIP++IV NK D Sbjct: 289 DI-IEKIGISRTKKTLIHADLIILIFDYSSGWTNEDESILKQL-PINIPLLIVGNKSDLT 346 Query: 125 IAQRNFYEI--YSLDFKEIVEISAEHDLGTSELHSVIFK 161 Q +F ++ Y L + +V ISA+ G +L + + K Sbjct: 347 NDQ-SFEKVPKYILKKENLVIISAKTGNGEDDLINYLLK 384 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 80/167 (47%), Gaps = 16/167 (9%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 L++A+ G+PNVGKS+L+NRL + + G TRD + + P+ DTAG+R Sbjct: 227 LKVALTGKPNVGKSSLMNRLSKQEKAIVTDLPGTTRDILESEIILEGIPVTFIDTAGLRD 286 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 I E + KK++ + I++ D + + +D I+ +++ NK Sbjct: 287 TKDIIEKIGISRTKKTLIH---ADLIILIFDYSSGWTNEDESILKQ-LPINIPLLIVGNK 342 Query: 324 WDMVSDKLNLLQDLRTKAIKNLPQ--IGDIYINTISGRTGEGLDDLM 368 D+ +D ++ + +P+ + + IS +TG G DDL+ Sbjct: 343 SDLTND----------QSFEKVPKYILKKENLVIISAKTGNGEDDLI 379 >gi|282895353|ref|ZP_06303554.1| tRNA modification GTPase TrmE [Raphidiopsis brookii D9] gi|281199604|gb|EFA74465.1| tRNA modification GTPase TrmE [Raphidiopsis brookii D9] Length = 460 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 57/177 (32%), Positives = 96/177 (54%), Gaps = 7/177 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKS+L N + A+V + PG TRD + Q ++ G+ ++DTAGI + Sbjct: 228 VAIVGRPNVGKSSLLNAWSQCDRAIVTDLPGTTRDIVESQLVVGGIPIQVLDTAGIRETV 287 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + K +++ A N A L+L ID+KAG D I + + K+ P+I+V NK+D Sbjct: 288 D-QVEKIGVERSRQAANSADLVLLTIDAKAGWQSGDEEI--YQQVKHRPLILVINKIDLV 344 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFK-QKYPNHPLEMIENNKR 180 + I S ++ V+ +A + G +L I ++ + QK L++ N ++ Sbjct: 345 ---EDLGGICSPTMEKAVKTAAGQNRGIEDLEQAILEVVQTQKIVAGDLDLAINQRQ 398 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 52/176 (29%), Positives = 91/176 (51%), Gaps = 17/176 (9%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 L++A+VGRPNVGKS+L+N +R + G TRD V PI++ DTAG+R+ Sbjct: 226 LKVAIVGRPNVGKSSLLNAWSQCDRAIVTDLPGTTRDIVESQLVVGGIPIQVLDTAGIRE 285 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 + +E+ V++S Q+ + + ++ +DA ++ D I V + ++L +NK Sbjct: 286 T---VDQVEKIGVERSRQAANSADLVLLTIDAKAGWQSGDEEIYQQVKH--RPLILVINK 340 Query: 324 WDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWK 379 D+V D + KA+K T +G+ G++DL ++LE+ + K Sbjct: 341 IDLVEDLGGICSPTMEKAVK-----------TAAGQN-RGIEDLEQAILEVVQTQK 384 >gi|315585839|gb|ADU40220.1| tRNA modification GTPase TrmE [Helicobacter pylori 35A] Length = 450 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 72/122 (59%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +++VG+PN GKS+L+N +L R L G TRD++ + H + + DTAG+R+ + Sbjct: 216 LSIVGKPNAGKSSLLNAMLLEERALVSDIKGTTRDTIEEVIELQGHKVRLIDTAGIRESA 275 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + +E+ ++KS++S+ C+ + + D + P EK+D ++D++ ++ LNK D Sbjct: 276 ---DKIERLGIEKSLKSLENCDIVLGVFDLSKPLEKEDFNLIDTLNRAKKPCIVVLNKND 332 Query: 326 MV 327 + Sbjct: 333 LA 334 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 33/120 (27%), Positives = 62/120 (51%), Gaps = 1/120 (0%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + ++IVG PN GKS+L N ++ ++ A+V + G TRD + + G ++DTAGI + Sbjct: 214 HALSIVGKPNAGKSSLLNAMLLEERALVSDIKGTTRDTIEEVIELQGHKVRLIDTAGIRE 273 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + I + +++ ++ ++L + D + D + L + P I+V NK D Sbjct: 274 SAD-KIERLGIEKSLKSLENCDIVLGVFDLSKPLEKEDFNLIDTLNRAKKPCIVVLNKND 332 >gi|205829221|sp|Q5N638|MNME_SYNP6 RecName: Full=tRNA modification GTPase mnmE Length = 462 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 55/158 (34%), Positives = 86/158 (54%), Gaps = 6/158 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKS+L N + A+V + PG TRD + Q I+ G+ ++DTAGI + Sbjct: 226 IAIVGRPNVGKSSLLNAWSRCDRAIVTDLPGRTRDLVESQLIVGGIPVQVLDTAGIRETS 285 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + + +++ A A L+L ID+ AG + D I + + PI++V NK D R Sbjct: 286 D-QVEQIGVERSRRAAQSADLVLLTIDASAGWSAEDQTIWEAVSDR--PILLVINKRD-R 341 Query: 125 I--AQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 + A+R+ + +FK IV +A G +L + I Sbjct: 342 LSEAERHAIALPQQEFKAIVWTAAAQQKGIEDLEAAIL 379 Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 48/167 (28%), Positives = 87/167 (52%), Gaps = 6/167 (3%) Query: 163 FKQKYPNHPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINR 222 F+ P LE I + + I S + + L+IA+VGRPNVGKS+L+N Sbjct: 184 FEDDLPPLDLEAIAAQLTAAGADMQAILSTADRG-ELLRTGLKIAIVGRPNVGKSSLLNA 242 Query: 223 LLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQS 282 +R + G TRD V P+++ DTAG+R+ S + +EQ V++S ++ Sbjct: 243 WSRCDRAIVTDLPGRTRDLVESQLIVGGIPVQVLDTAGIRETS---DQVEQIGVERSRRA 299 Query: 283 VRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSD 329 ++ + ++ +DA+ + +D I ++V + ++L +NK D +S+ Sbjct: 300 AQSADLVLLTIDASAGWSAEDQTIWEAVSD--RPILLVINKRDRLSE 344 >gi|317010176|gb|ADU80756.1| tRNA modification GTPase TrmE [Helicobacter pylori India7] Length = 450 Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 73/122 (59%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +++VG+PN GKS+L+N +L R L G TRD++ + H + + DTAG+R+ + Sbjct: 216 LSIVGKPNTGKSSLLNAMLLEERALVSDIKGTTRDTIEEVIELQGHKVRLIDTAGIRESA 275 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +++E+ ++KS++S+ C+ + + D + P EK+D ++D++ ++ LNK D Sbjct: 276 ---DTIERLGIEKSLKSLENCDIILGVFDLSKPLEKEDFNLIDTLNRAKKPCIVVLNKND 332 Query: 326 MV 327 + Sbjct: 333 LA 334 Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 63/120 (52%), Gaps = 1/120 (0%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + ++IVG PN GKS+L N ++ ++ A+V + G TRD + + G ++DTAGI + Sbjct: 214 HALSIVGKPNTGKSSLLNAMLLEERALVSDIKGTTRDTIEEVIELQGHKVRLIDTAGIRE 273 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + +I + +++ ++ +IL + D + D + L + P I+V NK D Sbjct: 274 SAD-TIERLGIEKSLKSLENCDIILGVFDLSKPLEKEDFNLIDTLNRAKKPCIVVLNKND 332 >gi|87308881|ref|ZP_01091020.1| tRNA modification GTPase TrmE [Blastopirellula marina DSM 3645] gi|87288592|gb|EAQ80487.1| tRNA modification GTPase TrmE [Blastopirellula marina DSM 3645] Length = 383 Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 37/111 (33%), Positives = 71/111 (63%), Gaps = 3/111 (2%) Query: 199 NISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDT 258 ++++P ++ + GRPNVGKS+LIN L+GY R + Q G TRD+V+ + + P+E+ DT Sbjct: 183 HLTRPWKVVIAGRPNVGKSSLINALVGYERAIVFDQPGTTRDAVTAAAAFDGWPVELADT 242 Query: 259 AGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDS 309 AG+R+ +++E++ V ++ Q + ++ DA+ + +D ++VD+ Sbjct: 243 AGLRESD---DAIEREGVSRARQLQSEADLILLAFDASAAWTDEDQQLVDA 290 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 41/120 (34%), Positives = 61/120 (50%), Gaps = 5/120 (4%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + + I G PNVGKS+L N LV + A+V + PG TRD + A +G + DTAG+ + Sbjct: 188 WKVVIAGRPNVGKSSLINALVGYERAIVFDQPGTTRDAVTAAAAFDGWPVELADTAGLRE 247 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + +I ++ + +EA LIL D+ A T D + + IIV NK D Sbjct: 248 SDD-AIEREGVSRARQLQSEADLILLAFDASAAWTDEDQQLV----DAHPDAIIVHNKCD 302 >gi|308185215|ref|YP_003929348.1| tRNA modification GTPase TrmE [Helicobacter pylori SJM180] gi|308061135|gb|ADO03031.1| tRNA modification GTPase TrmE [Helicobacter pylori SJM180] Length = 450 Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 72/122 (59%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +++VG+PN GKS+L+N +L R L G TRD++ + H + + DTAG+R+ + Sbjct: 216 LSIVGKPNAGKSSLLNAMLLEERALVSDIKGTTRDTIEEVIELQGHKVRLIDTAGIRESA 275 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + +E+ ++KS++S+ C+ + + D + P EK+D ++D++ ++ LNK D Sbjct: 276 ---DEIERLGIEKSLKSLENCDIILGVFDLSKPLEKEDFNLIDALNRAKKPCIVVLNKND 332 Query: 326 MV 327 + Sbjct: 333 LA 334 Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 62/120 (51%), Gaps = 1/120 (0%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + ++IVG PN GKS+L N ++ ++ A+V + G TRD + + G ++DTAGI + Sbjct: 214 HALSIVGKPNAGKSSLLNAMLLEERALVSDIKGTTRDTIEEVIELQGHKVRLIDTAGIRE 273 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + I + +++ ++ +IL + D + D + L + P I+V NK D Sbjct: 274 SAD-EIERLGIEKSLKSLENCDIILGVFDLSKPLEKEDFNLIDALNRAKKPCIVVLNKND 332 >gi|291524971|emb|CBK90558.1| GTP-binding protein Era [Eubacterium rectale DSM 17629] gi|291529105|emb|CBK94691.1| GTP-binding protein Era [Eubacterium rectale M104/1] Length = 303 Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 90/164 (54%), Gaps = 10/164 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRL---YGQAIINGVIFNIVDTAGIA 61 + I+G PNVGKSTL NRL+ +K+A+ N P TR+R+ Y ++F +DT GI Sbjct: 10 VTIIGRPNVGKSTLMNRLIGQKIAITSNKPQTTRNRIQTVYTDMEKGQIVF--LDTPGIH 67 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 KN + + M + E +NE ++L+L++ I + I L+K N P+I++ NK+ Sbjct: 68 KAKN-KLGEYMVNVAEKTLNEVDVVLWLVEPTNFIGAGEQHIIEQLKKVNTPVILIINKV 126 Query: 122 DTRIAQR--NFYEIYS--LDFKEIVEISAEHDLGTSELHSVIFK 161 DT ++ + + Y DF EI+ SA T ++ + IFK Sbjct: 127 DTVEKEKVLEYIDTYRKVYDFAEIIPTSALRGQNTDDVINSIFK 170 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 44/170 (25%), Positives = 86/170 (50%), Gaps = 11/170 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISW-NWKNHPIEIFDTAGMRKP 264 + ++GRPNVGKSTL+NRL+G +T ++ TR+ + + + + I DT G+ K Sbjct: 10 VTIIGRPNVGKSTLMNRLIGQKIAITSNKPQTTRNRIQTVYTDMEKGQIVFLDTPGIHKA 69 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 L + V + +++ + + L++ T + I++ + V+L +NK Sbjct: 70 KN---KLGEYMVNVAEKTLNEVDVVLWLVEPTNFIGAGEQHIIEQLKKVNTPVILIINKV 126 Query: 325 DMVSDKLNLLQDLRT-KAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 D V +K +L+ + T + + + +I I T S G+ DD++ S+ + Sbjct: 127 DTV-EKEKVLEYIDTYRKVYDFAEI----IPT-SALRGQNTDDVINSIFK 170 >gi|167766870|ref|ZP_02438923.1| hypothetical protein CLOSS21_01387 [Clostridium sp. SS2/1] gi|317499289|ref|ZP_07957562.1| tRNA modification GTPase TrmE [Lachnospiraceae bacterium 5_1_63FAA] gi|167711418|gb|EDS21997.1| hypothetical protein CLOSS21_01387 [Clostridium sp. SS2/1] gi|291558409|emb|CBL37209.1| tRNA modification GTPase trmE [butyrate-producing bacterium SSC/2] gi|316893458|gb|EFV15667.1| tRNA modification GTPase TrmE [Lachnospiraceae bacterium 5_1_63FAA] Length = 458 Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 58/185 (31%), Positives = 97/185 (52%), Gaps = 4/185 (2%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PN GKS++ N L+ ++ A+V + G TRD L I G+ NI+DTAGI D N Sbjct: 226 IVGKPNAGKSSVLNVLLGEERAIVTDIAGTTRDTLEESIQIKGIPLNIIDTAGIRD-TND 284 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 I K D+ + + +A L+L+++D+ +T D I + K +++ +D + Sbjct: 285 LIEKIGVDKAKDLLTKADLVLYVVDTSDPLTKDDEEIMELIEDKQTIVLLNKADLDQVVK 344 Query: 127 QRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEESPK 186 + E F++IV+ISA+ G EL+ +I IF + + + E+ N R++ Sbjct: 345 VSDLKE---KGFEQIVQISAKEQTGIEELYQLIQDIFFEGHVSFNDEIYLTNMRHKTEVS 401 Query: 187 ENITS 191 E + S Sbjct: 402 EALKS 406 Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 43/149 (28%), Positives = 81/149 (54%), Gaps = 7/149 (4%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + ++ +VG+PN GKS+++N LLG R + +G TRD++ S K P+ I DTA Sbjct: 218 LKEGIQTVIVGKPNAGKSSVLNVLLGEERAIVTDIAGTTRDTLEESIQIKGIPLNIIDTA 277 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R + + E + V K+ + + + ++D + P K D I++ + + ++ Sbjct: 278 GIRDTNDLIEKI---GVDKAKDLLTKADLVLYVVDTSDPLTKDDEEIMELIED--KQTIV 332 Query: 320 ALNKWDMVSDKLNLLQDLRTKAIKNLPQI 348 LNK D+ D++ + DL+ K + + QI Sbjct: 333 LLNKADL--DQVVKVSDLKEKGFEQIVQI 359 >gi|153865160|ref|ZP_01997782.1| Small GTP-binding protein [Beggiatoa sp. SS] gi|152145350|gb|EDN72219.1| Small GTP-binding protein [Beggiatoa sp. SS] Length = 153 Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 55/156 (35%), Positives = 80/156 (51%), Gaps = 19/156 (12%) Query: 89 LIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQRNFYEIYSLDFKEIVEISAEH 148 ++D + G+T D + LR+ N I +V NK + + E + L F E+ ISA H Sbjct: 1 MVDGQTGLTVVDENLAQSLRQFNTRIYLVINKSEGIEKELVSAEFHRLGFPEVYAISAAH 60 Query: 149 DLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAV 208 G + L + + + N E+N EE + K S+K IA+ Sbjct: 61 QQGITALMTTVLSTRQNVLEN------EDNSSWEEFLSD------KQSIK-------IAI 101 Query: 209 VGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 +GRPNVGKSTL+NR+LGY R++T Q G TRDS+ I Sbjct: 102 IGRPNVGKSTLVNRILGYERVITFDQPGTTRDSIFI 137 Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust. Identities = 19/38 (50%), Positives = 27/38 (71%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLY 42 IAI+G PNVGKSTL NR++ + + + PG TRD ++ Sbjct: 99 IAIIGRPNVGKSTLVNRILGYERVITFDQPGTTRDSIF 136 >gi|124024977|ref|YP_001014093.1| tRNA modification GTPase TrmE [Prochlorococcus marinus str. NATL1A] gi|166234805|sp|A2C018|MNME_PROM1 RecName: Full=tRNA modification GTPase mnmE gi|123960045|gb|ABM74828.1| putative thiophen / furan oxidation protein [Prochlorococcus marinus str. NATL1A] Length = 464 Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 57/159 (35%), Positives = 92/159 (57%), Gaps = 5/159 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+ G PNVGKS+L NRL K++ A+V + PG TRD L + ++ G+ +DTAG+ D K Sbjct: 229 VALAGKPNVGKSSLMNRLSKQEKAIVTDLPGTTRDILESEIVLEGIPVTFIDTAGLRDTK 288 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + I K +T+ + A LI+ + D +G T D +I L NIP++IV NK D Sbjct: 289 DI-IEKIGISRTKKTLIHADLIILIFDYSSGWTNEDESILKQL-PVNIPLLIVGNKSDL- 345 Query: 125 IAQRNFYEI--YSLDFKEIVEISAEHDLGTSELHSVIFK 161 + ++F ++ Y L + +V +SA+ G +L + + K Sbjct: 346 MNDQSFEKVPKYILKKENLVILSAKTGNGEDDLINYLLK 384 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 43/167 (25%), Positives = 81/167 (48%), Gaps = 16/167 (9%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 L++A+ G+PNVGKS+L+NRL + + G TRD + + P+ DTAG+R Sbjct: 227 LKVALAGKPNVGKSSLMNRLSKQEKAIVTDLPGTTRDILESEIVLEGIPVTFIDTAGLRD 286 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 I E + KK++ + I++ D + + +D I+ +++ NK Sbjct: 287 TKDIIEKIGISRTKKTLIH---ADLIILIFDYSSGWTNEDESILKQ-LPVNIPLLIVGNK 342 Query: 324 WDMVSDKLNLLQDLRTKAIKNLPQ--IGDIYINTISGRTGEGLDDLM 368 D+++D ++ + +P+ + + +S +TG G DDL+ Sbjct: 343 SDLMND----------QSFEKVPKYILKKENLVILSAKTGNGEDDLI 379 >gi|317182657|dbj|BAJ60441.1| tRNA modification GTPase TrmE [Helicobacter pylori F57] Length = 450 Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 72/122 (59%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +++VG+PN GKS+L+N +L R L G TRD++ K H + + DTAG+R+ + Sbjct: 216 LSIVGKPNAGKSSLLNAMLLEERALVSDIKGTTRDTIEEVIELKGHKVRLIDTAGIRESA 275 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + +E+ ++KS++S+ C+ + + D + P E++D ++D++ ++ LNK D Sbjct: 276 ---DKIERLGIEKSLKSLENCDIILGVFDLSKPLEQEDFNLIDTLNRAKKPCIVVLNKND 332 Query: 326 MV 327 + Sbjct: 333 LA 334 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 62/120 (51%), Gaps = 1/120 (0%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + ++IVG PN GKS+L N ++ ++ A+V + G TRD + + G ++DTAGI + Sbjct: 214 HALSIVGKPNAGKSSLLNAMLLEERALVSDIKGTTRDTIEEVIELKGHKVRLIDTAGIRE 273 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + I + +++ ++ +IL + D + D + L + P I+V NK D Sbjct: 274 SAD-KIERLGIEKSLKSLENCDIILGVFDLSKPLEQEDFNLIDTLNRAKKPCIVVLNKND 332 >gi|167038669|ref|YP_001666247.1| tRNA modification GTPase TrmE [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|205829184|sp|B0K8H9|MNME_THEP3 RecName: Full=tRNA modification GTPase mnmE gi|166857503|gb|ABY95911.1| tRNA modification GTPase TrmE [Thermoanaerobacter pseudethanolicus ATCC 33223] Length = 460 Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 56/165 (33%), Positives = 87/165 (52%), Gaps = 12/165 (7%) Query: 169 NHPLEMIENNKRNE--ESPKENITSEGK-----SSVKNISKPLRIAVVGRPNVGKSTLIN 221 + P E +E +R E E+ KE + K S + I + L+ A++G+PNVGKS+L+N Sbjct: 181 DFPEEDVEELERKEILETAKEIVEDIDKLIASSESGRIIREGLKTAIIGKPNVGKSSLLN 240 Query: 222 RLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQ 281 LL NR + G TRD + N K PI++ DTAG+R + E + V KS + Sbjct: 241 ALLKENRAIVTDIPGTTRDIIEEYVNVKGIPIKLIDTAGIRDTDELVEKI---GVTKSKE 297 Query: 282 SVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 + + + +LDA+ K+D I D + TG ++ LNK D+ Sbjct: 298 VLAEADLILFVLDASRELTKEDYEIFDIL--TGKNIIFVLNKIDL 340 Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 59/180 (32%), Positives = 97/180 (53%), Gaps = 8/180 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+K+ A+V + PG TRD + + G+ ++DTAGI D Sbjct: 226 AIIGKPNVGKSSLLNALLKENRAIVTDIPGTTRDIIEEYVNVKGIPIKLIDTAGIRDTDE 285 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD--T 123 + K +++ + EA LILF++D+ +T D+ I L KN II V NK+D Sbjct: 286 L-VEKIGVTKSKEVLAEADLILFVLDASRELTKEDYEIFDILTGKN--IIFVLNKIDLPK 342 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK-IFKQKYPNHPLEMIENNKRNE 182 +I ++ ++ I+E+S +G EL + I+ +F+ E++ N++ E Sbjct: 343 KIDEKELKDLTKDGI--IIEVSTVEKIGLEELENTIYNLVFRGDISLREDEIVINSRHKE 400 >gi|256751460|ref|ZP_05492338.1| tRNA modification GTPase TrmE [Thermoanaerobacter ethanolicus CCSD1] gi|256749679|gb|EEU62705.1| tRNA modification GTPase TrmE [Thermoanaerobacter ethanolicus CCSD1] Length = 462 Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 56/165 (33%), Positives = 87/165 (52%), Gaps = 12/165 (7%) Query: 169 NHPLEMIENNKRNE--ESPKENITSEGK-----SSVKNISKPLRIAVVGRPNVGKSTLIN 221 + P E +E +R E E+ KE + K S + I + L+ A++G+PNVGKS+L+N Sbjct: 183 DFPEEDVEELERKEILETAKEIVEDIDKLIASSESGRIIREGLKTAIIGKPNVGKSSLLN 242 Query: 222 RLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQ 281 LL NR + G TRD + N K PI++ DTAG+R + E + V KS + Sbjct: 243 ALLKENRAIVTDIPGTTRDIIEEYVNVKGIPIKLIDTAGIRDTDELVEKI---GVTKSKE 299 Query: 282 SVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 + + + +LDA+ K+D I D + TG ++ LNK D+ Sbjct: 300 VLAEADLILFVLDASRELTKEDYEIFDIL--TGKNIIFVLNKIDL 342 Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 59/180 (32%), Positives = 97/180 (53%), Gaps = 8/180 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+K+ A+V + PG TRD + + G+ ++DTAGI D Sbjct: 228 AIIGKPNVGKSSLLNALLKENRAIVTDIPGTTRDIIEEYVNVKGIPIKLIDTAGIRDTDE 287 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD--T 123 + K +++ + EA LILF++D+ +T D+ I L KN II V NK+D Sbjct: 288 L-VEKIGVTKSKEVLAEADLILFVLDASRELTKEDYEIFDILTGKN--IIFVLNKIDLPK 344 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK-IFKQKYPNHPLEMIENNKRNE 182 +I ++ ++ I+E+S +G EL + I+ +F+ E++ N++ E Sbjct: 345 KIDEKELKDLTKDGI--IIEVSTVEKIGLEELENTIYNLVFRGDISLREDEIVINSRHKE 402 >gi|167041019|ref|YP_001664004.1| tRNA modification GTPase TrmE [Thermoanaerobacter sp. X514] gi|205829185|sp|B0K5N4|MNME_THEPX RecName: Full=tRNA modification GTPase mnmE gi|166855259|gb|ABY93668.1| tRNA modification GTPase TrmE [Thermoanaerobacter sp. X514] Length = 460 Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 56/165 (33%), Positives = 87/165 (52%), Gaps = 12/165 (7%) Query: 169 NHPLEMIENNKRNE--ESPKENITSEGK-----SSVKNISKPLRIAVVGRPNVGKSTLIN 221 + P E +E +R E E+ KE + K S + I + L+ A++G+PNVGKS+L+N Sbjct: 181 DFPEEDVEELERKEILETAKEIVEDIDKLIASSESGRIIREGLKTAIIGKPNVGKSSLLN 240 Query: 222 RLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQ 281 LL NR + G TRD + N K PI++ DTAG+R + E + V KS + Sbjct: 241 ALLKENRAIVTDIPGTTRDIIEEYVNVKGIPIKLIDTAGIRDTDELVEKI---GVTKSKE 297 Query: 282 SVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 + + + +LDA+ K+D I D + TG ++ LNK D+ Sbjct: 298 VLAEADLILFVLDASRELTKEDYEIFDIL--TGKNIIFVLNKIDL 340 Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 59/180 (32%), Positives = 97/180 (53%), Gaps = 8/180 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+K+ A+V + PG TRD + + G+ ++DTAGI D Sbjct: 226 AIIGKPNVGKSSLLNALLKENRAIVTDIPGTTRDIIEEYVNVKGIPIKLIDTAGIRDTDE 285 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD--T 123 + K +++ + EA LILF++D+ +T D+ I L KN II V NK+D Sbjct: 286 L-VEKIGVTKSKEVLAEADLILFVLDASRELTKEDYEIFDILTGKN--IIFVLNKIDLPK 342 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK-IFKQKYPNHPLEMIENNKRNE 182 +I ++ ++ I+E+S +G EL + I+ +F+ E++ N++ E Sbjct: 343 KIDEKELKDLTKDGI--IIEVSTVEKIGLEELENTIYNLVFRGDISLREDEIVINSRHKE 400 >gi|317178156|dbj|BAJ55945.1| tRNA modification GTPase TrmE [Helicobacter pylori F16] Length = 450 Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 72/122 (59%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +++VG+PN GKS+L+N +L R L G TRD++ + H + + DTAG+R+ + Sbjct: 216 LSIVGKPNAGKSSLLNAMLLEERALVSDIKGTTRDTIEEVIELQGHKVRLIDTAGIRESA 275 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + +E+ ++KS++S+ C+ + + D + P EK+D ++D++ ++ LNK D Sbjct: 276 ---DKIERLGIEKSLKSLENCDIILGVFDLSKPLEKEDFNLIDTLNRAKKPCIVVLNKND 332 Query: 326 MV 327 + Sbjct: 333 LA 334 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 62/120 (51%), Gaps = 1/120 (0%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + ++IVG PN GKS+L N ++ ++ A+V + G TRD + + G ++DTAGI + Sbjct: 214 HALSIVGKPNAGKSSLLNAMLLEERALVSDIKGTTRDTIEEVIELQGHKVRLIDTAGIRE 273 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + I + +++ ++ +IL + D + D + L + P I+V NK D Sbjct: 274 SAD-KIERLGIEKSLKSLENCDIILGVFDLSKPLEKEDFNLIDTLNRAKKPCIVVLNKND 332 >gi|300913770|ref|ZP_07131087.1| tRNA modification GTPase TrmE [Thermoanaerobacter sp. X561] gi|307725544|ref|YP_003905295.1| tRNA modification GTPase TrmE [Thermoanaerobacter sp. X513] gi|300890455|gb|EFK85600.1| tRNA modification GTPase TrmE [Thermoanaerobacter sp. X561] gi|307582605|gb|ADN56004.1| tRNA modification GTPase TrmE [Thermoanaerobacter sp. X513] Length = 462 Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 56/165 (33%), Positives = 87/165 (52%), Gaps = 12/165 (7%) Query: 169 NHPLEMIENNKRNE--ESPKENITSEGK-----SSVKNISKPLRIAVVGRPNVGKSTLIN 221 + P E +E +R E E+ KE + K S + I + L+ A++G+PNVGKS+L+N Sbjct: 183 DFPEEDVEELERKEILETAKEIVEDIDKLIASSESGRIIREGLKTAIIGKPNVGKSSLLN 242 Query: 222 RLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQ 281 LL NR + G TRD + N K PI++ DTAG+R + E + V KS + Sbjct: 243 ALLKENRAIVTDIPGTTRDIIEEYVNVKGIPIKLIDTAGIRDTDELVEKI---GVTKSKE 299 Query: 282 SVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 + + + +LDA+ K+D I D + TG ++ LNK D+ Sbjct: 300 VLAEADLILFVLDASRELTKEDYEIFDIL--TGKNIIFVLNKIDL 342 Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 59/180 (32%), Positives = 97/180 (53%), Gaps = 8/180 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+K+ A+V + PG TRD + + G+ ++DTAGI D Sbjct: 228 AIIGKPNVGKSSLLNALLKENRAIVTDIPGTTRDIIEEYVNVKGIPIKLIDTAGIRDTDE 287 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD--T 123 + K +++ + EA LILF++D+ +T D+ I L KN II V NK+D Sbjct: 288 L-VEKIGVTKSKEVLAEADLILFVLDASRELTKEDYEIFDILTGKN--IIFVLNKIDLPK 344 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK-IFKQKYPNHPLEMIENNKRNE 182 +I ++ ++ I+E+S +G EL + I+ +F+ E++ N++ E Sbjct: 345 KIDEKELKDLTKDGI--IIEVSTVEKIGLEELENTIYNLVFRGDISLREDEIVINSRHKE 402 >gi|320117061|ref|YP_004187220.1| tRNA modification GTPase TrmE [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|319930152|gb|ADV80837.1| tRNA modification GTPase TrmE [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 462 Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 56/165 (33%), Positives = 87/165 (52%), Gaps = 12/165 (7%) Query: 169 NHPLEMIENNKRNE--ESPKENITSEGK-----SSVKNISKPLRIAVVGRPNVGKSTLIN 221 + P E +E +R E E+ KE + K S + I + L+ A++G+PNVGKS+L+N Sbjct: 183 DFPEEDVEELERKEILETAKEIVEDIDKLIASSESGRIIREGLKTAIIGKPNVGKSSLLN 242 Query: 222 RLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQ 281 LL NR + G TRD + N K PI++ DTAG+R + E + V KS + Sbjct: 243 ALLKENRAIVTDIPGTTRDIIEEYVNVKGIPIKLIDTAGIRDTDELVEKI---GVTKSKE 299 Query: 282 SVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 + + + +LDA+ K+D I D + TG ++ LNK D+ Sbjct: 300 VLAEADLILFVLDASRELTKEDYEIFDIL--TGKNIIFVLNKIDL 342 Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 59/180 (32%), Positives = 97/180 (53%), Gaps = 8/180 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+K+ A+V + PG TRD + + G+ ++DTAGI D Sbjct: 228 AIIGKPNVGKSSLLNALLKENRAIVTDIPGTTRDIIEEYVNVKGIPIKLIDTAGIRDTDE 287 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD--T 123 + K +++ + EA LILF++D+ +T D+ I L KN II V NK+D Sbjct: 288 L-VEKIGVTKSKEVLAEADLILFVLDASRELTKEDYEIFDILTGKN--IIFVLNKIDLPK 344 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK-IFKQKYPNHPLEMIENNKRNE 182 +I ++ ++ I+E+S +G EL + I+ +F+ E++ N++ E Sbjct: 345 KIDEKELKDLTKDGI--IIEVSTVEKIGLEELENTIYNLVFRGDISLREDEIVINSRHKE 402 >gi|78213961|ref|YP_382740.1| tRNA modification GTPase TrmE [Synechococcus sp. CC9605] gi|123577422|sp|Q3AGU7|MNME_SYNSC RecName: Full=tRNA modification GTPase mnmE gi|78198420|gb|ABB36185.1| tRNA modification GTPase TrmE [Synechococcus sp. CC9605] Length = 450 Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 46/119 (38%), Positives = 74/119 (62%), Gaps = 4/119 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKS+L NRL +++ A+V + PG TRD L + ++ GV ++DTAGI Sbjct: 224 VALVGRPNVGKSSLLNRLSRRERAIVTDLPGTTRDLLESEIVLEGVPITLLDTAGIRSTD 283 Query: 65 NCSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + +Q+ ++E A+ A ++L ++D AG T D A+ + + IP I+V+NK D Sbjct: 284 DA--VEQLGIARSEQALATADVVLLVLDGHAGWTAEDAALLARI-PAQIPRILVANKAD 339 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 90/172 (52%), Gaps = 5/172 (2%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + LR+A+VGRPNVGKS+L+NRL R + G TRD + + PI + DTA Sbjct: 218 LRQGLRVALVGRPNVGKSSLLNRLSRRERAIVTDLPGTTRDLLESEIVLEGVPITLLDTA 277 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R +++EQ + +S Q++ T + +++LD + +D ++ + +++ Sbjct: 278 GIRSTD---DAVEQLGIARSEQALATADVVLLVLDGHAGWTAEDAALLARIPAQIPRILV 334 Query: 320 ALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSV 371 A NK D+ + D++ A++ + + D+ + G D ++V++ Sbjct: 335 A-NKADLPAGAFPQPVDVQLSALEGMGE-ADLVQALLERCGAAGTDGMLVAL 384 >gi|308064209|gb|ADO06096.1| tRNA modification GTPase TrmE [Helicobacter pylori Sat464] Length = 450 Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 72/122 (59%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +++VG+PN GKS+L+N +L R L G TRD++ + H + + DTAG+R+ + Sbjct: 216 LSIVGKPNAGKSSLLNAMLLEERALVSDIKGTTRDTIEEVIELQGHKVRLIDTAGIRESA 275 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + +E+ ++KS++S+ C+ + + D + P EK+D ++D++ ++ LNK D Sbjct: 276 ---DKIERLGIEKSLKSLENCDIILGVFDLSKPLEKEDFNLIDTLNRAKKPCIVVLNKND 332 Query: 326 MV 327 + Sbjct: 333 LA 334 Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 62/120 (51%), Gaps = 1/120 (0%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + ++IVG PN GKS+L N ++ ++ A+V + G TRD + + G ++DTAGI + Sbjct: 214 HALSIVGKPNAGKSSLLNAMLLEERALVSDIKGTTRDTIEEVIELQGHKVRLIDTAGIRE 273 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + I + +++ ++ +IL + D + D + L + P I+V NK D Sbjct: 274 SAD-KIERLGIEKSLKSLENCDIILGVFDLSKPLEKEDFNLIDTLNRAKKPCIVVLNKND 332 >gi|302341712|ref|YP_003806241.1| tRNA modification GTPase TrmE [Desulfarculus baarsii DSM 2075] gi|301638325|gb|ADK83647.1| tRNA modification GTPase TrmE [Desulfarculus baarsii DSM 2075] Length = 460 Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 53/177 (29%), Positives = 89/177 (50%), Gaps = 8/177 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI G PNVGKS+LFN L+ ++ A+V PG TRD + I+ GV + DTAG+ Sbjct: 228 VAICGRPNVGKSSLFNALLGRQRAIVSERPGATRDVVDEVLILGGVACRLADTAGLGPAA 287 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + + ++ + + L L L+D +T DHA+ + + + P ++V NK D Sbjct: 288 D-ELDRLGQERATSFLADCDLALVLLDGSRPLTSADHAVLALCQDR--PRLLVVNKADLP 344 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPN-HPLEMIENNKR 180 A ++ +L + ISA LG +EL + + Q P E++ N ++ Sbjct: 345 PA----WQPSALGLGPTLAISATSGLGLNELARAVAEALCQGAAEPAPGEVVVNARQ 397 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 53/173 (30%), Positives = 83/173 (47%), Gaps = 26/173 (15%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP 264 ++A+ GRPNVGKS+L N LLG R + + G TRD V + DTAG+ P Sbjct: 227 KVAICGRPNVGKSSLFNALLGRQRAIVSERPGATRDVVDEVLILGGVACRLADTAGL-GP 285 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 + + L++ +++ + C+ +VLLD + P D HA VLAL + Sbjct: 286 A--ADELDRLGQERATSFLADCDLALVLLDGSRPLTSAD-----------HA-VLALCQ- 330 Query: 325 D----MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 D +V +K +L + A+ P + IS +G GL++L +V E Sbjct: 331 DRPRLLVVNKADLPPAWQPSALGLGPTL------AISATSGLGLNELARAVAE 377 >gi|210617164|ref|ZP_03291431.1| hypothetical protein CLONEX_03653 [Clostridium nexile DSM 1787] gi|210149439|gb|EEA80448.1| hypothetical protein CLONEX_03653 [Clostridium nexile DSM 1787] Length = 299 Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 63/192 (32%), Positives = 94/192 (48%), Gaps = 11/192 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + ++G PNVGKSTL N L+ +K+A+ N P TR+R+ + VDT GI K Sbjct: 10 VTLIGRPNVGKSTLMNYLIGQKIAITSNKPQTTRNRIQTVLTMEEGQIVFVDTPGIHKAK 69 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 N + + M + E +NE ++L+L++ I + I L+K P+++V NK+D Sbjct: 70 N-KLGEYMVNVAERTLNEVDVVLWLVEPSTFIGAGEKHIADQLKKVKTPVVLVINKVDMV 128 Query: 124 -RIAQRNFYEIYS--LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 R F + Y DF EIV +SA T EL VI Q P P E+ Sbjct: 129 KREEVLTFIDAYRKIYDFAEIVPVSARSGENTDELVKVIL----QYLPYGPQFYDEDTVT 184 Query: 181 NEESPKENITSE 192 ++ P+ I SE Sbjct: 185 DQ--PERQIVSE 194 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 16/172 (9%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 + ++GRPNVGKSTL+N L+G +T ++ TR+ + + I DT G+ K Sbjct: 10 VTLIGRPNVGKSTLMNYLIGQKIAITSNKPQTTRNRIQTVLTMEEGQIVFVDTPGIHKAK 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + V + +++ + + L++ + + I D + VVL +NK D Sbjct: 70 N---KLGEYMVNVAERTLNEVDVVLWLVEPSTFIGAGEKHIADQLKKVKTPVVLVINKVD 126 Query: 326 MVSDKLNLLQDLRTKAIKNLPQIGDIY----INTISGRTGEGLDDLMVSVLE 373 MV R + + + IY I +S R+GE D+L+ +L+ Sbjct: 127 MVK---------REEVLTFIDAYRKIYDFAEIVPVSARSGENTDELVKVILQ 169 >gi|317011582|gb|ADU85329.1| tRNA modification GTPase TrmE [Helicobacter pylori SouthAfrica7] Length = 450 Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 71/122 (58%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 ++++G+PN GKS+L+N +L R L G TRD++ + H + + DTAG+R+ Sbjct: 216 LSIIGKPNAGKSSLLNAMLLEERALVSDIKGTTRDTIEEVIELQGHKVRLIDTAGIRES- 274 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + +E+ ++KS++S+ C+ + + D + P EK+D I+D++ ++ LNK D Sbjct: 275 --MDEIERLGIEKSLKSLENCDIILGVFDLSKPLEKEDFTIIDALNRAKKPCIVVLNKND 332 Query: 326 MV 327 + Sbjct: 333 LA 334 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 62/120 (51%), Gaps = 1/120 (0%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + ++I+G PN GKS+L N ++ ++ A+V + G TRD + + G ++DTAGI + Sbjct: 214 HALSIIGKPNAGKSSLLNAMLLEERALVSDIKGTTRDTIEEVIELQGHKVRLIDTAGIRE 273 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + I + +++ ++ +IL + D + D I L + P I+V NK D Sbjct: 274 SMD-EIERLGIEKSLKSLENCDIILGVFDLSKPLEKEDFTIIDALNRAKKPCIVVLNKND 332 >gi|95930678|ref|ZP_01313412.1| GTP-binding protein Era [Desulfuromonas acetoxidans DSM 684] gi|95133330|gb|EAT14995.1| GTP-binding protein Era [Desulfuromonas acetoxidans DSM 684] Length = 303 Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 59/183 (32%), Positives = 98/183 (53%), Gaps = 17/183 (9%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI--AD 62 ++IVG PNVGKSTL N+++ +K+A+ N P TR+R+ G + +DT GI A Sbjct: 16 VSIVGRPNVGKSTLLNQILGQKIAITANKPQTTRNRILGIHSEDNAQVLFLDTPGIHKAT 75 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 GK + + M DQ A +++FL+++ + D I L + +IP+++V NK+D Sbjct: 76 GK---LNQYMVDQALSACRGVDVVVFLVEATDRVGGGDDFILDVLAQSDIPVVLVINKVD 132 Query: 123 T--------RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEM 174 IAQ + E + DFKEI+ +SA + G L + + + + P +P EM Sbjct: 133 LVEKDKLLPLIAQ--YAERF--DFKEIIPLSALNGSGVERLVASVRDMLPEGPPYYPEEM 188 Query: 175 IEN 177 + + Sbjct: 189 VTD 191 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 43/127 (33%), Positives = 70/127 (55%), Gaps = 4/127 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +++VGRPNVGKSTL+N++LG +T ++ TR+ + + N + DT G+ K Sbjct: 16 VSIVGRPNVGKSTLLNQILGQKIAITANKPQTTRNRILGIHSEDNAQVLFLDTPGIHKA- 74 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 T L Q V +++ + R + + L++AT D I+D + + VVL +NK D Sbjct: 75 --TGKLNQYMVDQALSACRGVDVVVFLVEATDRVGGGDDFILDVLAQSDIPVVLVINKVD 132 Query: 326 MVS-DKL 331 +V DKL Sbjct: 133 LVEKDKL 139 >gi|297618522|ref|YP_003703681.1| tRNA modification GTPase TrmE [Syntrophothermus lipocalidus DSM 12680] gi|297146359|gb|ADI03116.1| tRNA modification GTPase TrmE [Syntrophothermus lipocalidus DSM 12680] Length = 460 Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 58/181 (32%), Positives = 96/181 (53%), Gaps = 4/181 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + I G PNVGKS+L N L++KK A+V + PG TRD + + G+ NI+DTAGI + Sbjct: 224 VVIAGKPNVGKSSLLNALLRKKKAIVTDIPGTTRDIVEDYINVKGIPVNIMDTAGIRETG 283 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + + +++E I+EA +IL ++D+ AGI+ D + + + +I++ NK D Sbjct: 284 DL-VERIGVERSEEVISEADIILAVLDAGAGISEEDERVAKMVAGRR--VIVLVNKEDLE 340 Query: 125 IAQRNFYEIYSL-DFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + E+ L + +V S + ++G EL S I + E I N R EE Sbjct: 341 EKRVTLEEVERLFPGQTVVRGSVKEEIGLEELESAIEEAVLAGKVEAGDEDIMVNLRQEE 400 Query: 184 S 184 + Sbjct: 401 A 401 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 40/130 (30%), Positives = 70/130 (53%), Gaps = 5/130 (3%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 +++ + G+PNVGKS+L+N LL + + G TRD V N K P+ I DTAG+R+ Sbjct: 222 VKVVIAGKPNVGKSSLLNALLRKKKAIVTDIPGTTRDIVEDYINVKGIPVNIMDTAGIRE 281 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 + E + V++S + + + + +LDA ++D R+ V G V++ +NK Sbjct: 282 TGDLVERI---GVERSEEVISEADIILAVLDAGAGISEEDERVAKMV--AGRRVIVLVNK 336 Query: 324 WDMVSDKLNL 333 D+ ++ L Sbjct: 337 EDLEEKRVTL 346 >gi|282901593|ref|ZP_06309512.1| tRNA modification GTPase TrmE [Cylindrospermopsis raciborskii CS-505] gi|281193519|gb|EFA68497.1| tRNA modification GTPase TrmE [Cylindrospermopsis raciborskii CS-505] Length = 460 Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 56/177 (31%), Positives = 96/177 (54%), Gaps = 7/177 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKS+L N + A+V + PG TRD + Q ++ G+ ++DTAGI + Sbjct: 228 VAIVGRPNVGKSSLLNAWSQCDRAIVTDLPGTTRDIVESQLVVGGIPIQVLDTAGIRETV 287 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + K +++ A N A L+L ID+ AG D I + + K+ P+I+V NK+D Sbjct: 288 D-QVEKLGVERSRQAANSADLVLLTIDATAGWQSGDEEI--YQQVKHRPLILVINKIDLV 344 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFK-QKYPNHPLEMIENNKR 180 + I S + ++ V+ +A + G +L I ++ + QK L++ N ++ Sbjct: 345 ---EDLGGICSPNIEKAVKTAAAQNRGIEDLEQAILEVVQTQKIVAGDLDLAINQRQ 398 Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 51/176 (28%), Positives = 89/176 (50%), Gaps = 17/176 (9%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 L++A+VGRPNVGKS+L+N +R + G TRD V PI++ DTAG+R+ Sbjct: 226 LKVAIVGRPNVGKSSLLNAWSQCDRAIVTDLPGTTRDIVESQLVVGGIPIQVLDTAGIRE 285 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 + +E+ V++S Q+ + + ++ +DAT ++ D I V + ++L +NK Sbjct: 286 T---VDQVEKLGVERSRQAANSADLVLLTIDATAGWQSGDEEIYQQVKH--RPLILVINK 340 Query: 324 WDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWK 379 D+V D + KA+K + G++DL ++LE+ + K Sbjct: 341 IDLVEDLGGICSPNIEKAVKT------------AAAQNRGIEDLEQAILEVVQTQK 384 >gi|253681274|ref|ZP_04862072.1| tRNA modification GTPase TrmE [Clostridium botulinum D str. 1873] gi|253562512|gb|EES91963.1| tRNA modification GTPase TrmE [Clostridium botulinum D str. 1873] Length = 459 Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 66/204 (32%), Positives = 104/204 (50%), Gaps = 21/204 (10%) Query: 167 YPNHPLEMIENNKRNEESPKENITSEGKSSVKNISKPLR----IAVVGRPNVGKSTLINR 222 YP LE + + K E+ K + S N K LR +VG+PNVGKS+++N Sbjct: 183 YPEDDLEEVTSEKGKEDVDKIITEIDKLLSSANEGKILREGLNTVIVGKPNVGKSSILNA 242 Query: 223 LLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQS 282 LL R + G TRD + + + PI+I DTAG+R+ I E + V+KS + Sbjct: 243 LLMETRAIVTDIPGTTRDVIEEYMSIEGIPIKIVDTAGIRETDDIVEKI---GVEKSREK 299 Query: 283 VRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAI 342 + + T+++LD++ + +D I+D + + + V+ LNK DL TK Sbjct: 300 ILNSDLTVLVLDSSRELDAEDKEIIDFIKDKKYIVL--LNKI-----------DLDTKLD 346 Query: 343 K-NLPQIGDIYINTISGRTGEGLD 365 K +L ++ YI IS +TG+GLD Sbjct: 347 KGSLNKLNSDYIIDISAKTGKGLD 370 Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 52/176 (29%), Positives = 90/176 (51%), Gaps = 4/176 (2%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PNVGKS++ N L+ + A+V + PG TRD + I G+ IVDTAGI + + Sbjct: 228 IVGKPNVGKSSILNALLMETRAIVTDIPGTTRDVIEEYMSIEGIPIKIVDTAGIRETDDI 287 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 + K +++ I + L + ++DS + D I F++ K +++ +DT++ Sbjct: 288 -VEKIGVEKSREKILNSDLTVLVLDSSRELDAEDKEIIDFIKDKKYIVLLNKIDLDTKLD 346 Query: 127 QRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 + + ++ S D+ I++ISA+ G VI ++F MI N + E Sbjct: 347 KGSLNKLNS-DY--IIDISAKTGKGLDRFKEVIKELFFSGEVTSKDVMITNTRHKE 399 >gi|188528222|ref|YP_001910909.1| tRNA modification GTPase TrmE [Helicobacter pylori Shi470] gi|254811486|sp|B2UVJ7|MNME_HELPS RecName: Full=tRNA modification GTPase mnmE gi|188144462|gb|ACD48879.1| tRNA modification GTPase TrmE [Helicobacter pylori Shi470] Length = 450 Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 72/122 (59%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +++VG+PN GKS+L+N +L R L G TRD++ + H + + DTAG+R+ + Sbjct: 216 LSIVGKPNAGKSSLLNAMLLEERALVSDIKGTTRDTIEEVIELQGHKVRLIDTAGIRESA 275 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + +E+ ++KS++S+ C+ + + D + P EK+D ++D++ ++ LNK D Sbjct: 276 ---DKIERLGIEKSLKSLENCDIILGVFDLSKPLEKEDFNLIDTLNRAKKPCIVVLNKND 332 Query: 326 MV 327 + Sbjct: 333 LA 334 Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 62/120 (51%), Gaps = 1/120 (0%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + ++IVG PN GKS+L N ++ ++ A+V + G TRD + + G ++DTAGI + Sbjct: 214 HALSIVGKPNAGKSSLLNAMLLEERALVSDIKGTTRDTIEEVIELQGHKVRLIDTAGIRE 273 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + I + +++ ++ +IL + D + D + L + P I+V NK D Sbjct: 274 SAD-KIERLGIEKSLKSLENCDIILGVFDLSKPLEKEDFNLIDTLNRAKKPCIVVLNKND 332 >gi|317181135|dbj|BAJ58921.1| tRNA modification GTPase TrmE [Helicobacter pylori F32] Length = 450 Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 73/122 (59%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +++VG+PN GKS+L+N +L R L G TRD++ + H + + DTAG+R+ + Sbjct: 216 LSIVGKPNAGKSSLLNAMLLEERALVSDIKGTTRDTIEEVIELQGHKVRLIDTAGIRESA 275 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +++E+ ++KS++S+ C+ + + D + P E++D ++D++ ++ LNK D Sbjct: 276 ---DTIERLGIEKSLKSLENCDIVLGVFDLSKPLEQEDFNLIDTLNRAKKPCIVVLNKND 332 Query: 326 MV 327 + Sbjct: 333 LA 334 Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 33/120 (27%), Positives = 63/120 (52%), Gaps = 1/120 (0%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + ++IVG PN GKS+L N ++ ++ A+V + G TRD + + G ++DTAGI + Sbjct: 214 HALSIVGKPNAGKSSLLNAMLLEERALVSDIKGTTRDTIEEVIELQGHKVRLIDTAGIRE 273 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + +I + +++ ++ ++L + D + D + L + P I+V NK D Sbjct: 274 SAD-TIERLGIEKSLKSLENCDIVLGVFDLSKPLEQEDFNLIDTLNRAKKPCIVVLNKND 332 >gi|148381580|ref|YP_001256121.1| tRNA modification GTPase TrmE [Clostridium botulinum A str. ATCC 3502] gi|153931640|ref|YP_001385957.1| tRNA modification GTPase TrmE [Clostridium botulinum A str. ATCC 19397] gi|153937169|ref|YP_001389364.1| tRNA modification GTPase TrmE [Clostridium botulinum A str. Hall] gi|168181110|ref|ZP_02615774.1| tRNA modification GTPase TrmE [Clostridium botulinum NCTC 2916] gi|170756593|ref|YP_001783278.1| tRNA modification GTPase TrmE [Clostridium botulinum B1 str. Okra] gi|226951095|ref|YP_002806186.1| tRNA modification GTPase TrmE [Clostridium botulinum A2 str. Kyoto] gi|166200473|sp|A7FPM0|MNME_CLOB1 RecName: Full=tRNA modification GTPase mnmE gi|166200474|sp|A5I816|MNME_CLOBH RecName: Full=tRNA modification GTPase mnmE gi|205829143|sp|B1IHR9|MNME_CLOBK RecName: Full=tRNA modification GTPase mnmE gi|148291064|emb|CAL85201.1| probable tRNA modification GTPase [Clostridium botulinum A str. ATCC 3502] gi|152927684|gb|ABS33184.1| tRNA modification GTPase TrmE [Clostridium botulinum A str. ATCC 19397] gi|152933083|gb|ABS38582.1| tRNA modification GTPase TrmE [Clostridium botulinum A str. Hall] gi|169121805|gb|ACA45641.1| tRNA modification GTPase TrmE [Clostridium botulinum B1 str. Okra] gi|182668135|gb|EDT80114.1| tRNA modification GTPase TrmE [Clostridium botulinum NCTC 2916] gi|226841162|gb|ACO83828.1| tRNA modification GTPase TrmE [Clostridium botulinum A2 str. Kyoto] gi|322807967|emb|CBZ05542.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Clostridium botulinum H04402 065] Length = 461 Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 62/180 (34%), Positives = 100/180 (55%), Gaps = 7/180 (3%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PNVGKS+L N L+ + A+V PG TRD + I+G+ IVDTAGI + ++ Sbjct: 228 IVGKPNVGKSSLLNALINENKAIVTEIPGTTRDVIEEYINIDGIPIKIVDTAGIRETEDV 287 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD--TR 124 + K ++++ I+EA L++F++D I D I F+ KN I++ NK+D Sbjct: 288 -VEKIGVEKSKEKIDEADLVIFMLDLSRKIDEEDIEIMDFI--KNKKYIVLLNKLDLNKD 344 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + N + I LD K I++ S +++ G +EL I +F E+I N R++E+ Sbjct: 345 LNEENHF-IKELDSKYIIKTSVKNNSGLNELKECIKNLFFSGEIKSD-ELIVTNARHQEA 402 Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 52/168 (30%), Positives = 87/168 (51%), Gaps = 11/168 (6%) Query: 167 YPNHPLEMIENNKRNEESPK-----ENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLIN 221 YP LE I K + + +N+ S + K + + L +VG+PNVGKS+L+N Sbjct: 183 YPEDDLEEITGQKIKVDLKEIINKIDNLISASEEG-KILREGLNTVIVGKPNVGKSSLLN 241 Query: 222 RLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQ 281 L+ N+ + G TRD + N PI+I DTAG+R+ + E + V+KS + Sbjct: 242 ALINENKAIVTEIPGTTRDVIEEYINIDGIPIKIVDTAGIRETEDVVEKI---GVEKSKE 298 Query: 282 SVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSD 329 + + I +LD + +++D+ I+D + N + V+ LNK D+ D Sbjct: 299 KIDEADLVIFMLDLSRKIDEEDIEIMDFIKNKKYIVL--LNKLDLNKD 344 >gi|170758742|ref|YP_001788985.1| tRNA modification GTPase TrmE [Clostridium botulinum A3 str. Loch Maree] gi|205829144|sp|B1KUB2|MNME_CLOBM RecName: Full=tRNA modification GTPase mnmE gi|169405731|gb|ACA54142.1| tRNA modification GTPase TrmE [Clostridium botulinum A3 str. Loch Maree] Length = 461 Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 62/180 (34%), Positives = 100/180 (55%), Gaps = 7/180 (3%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PNVGKS+L N L+ + A+V PG TRD + I+G+ IVDTAGI + ++ Sbjct: 228 IVGKPNVGKSSLLNALINENKAIVTEIPGTTRDVIEEYINIDGIPIKIVDTAGIRETEDV 287 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD--TR 124 + K ++++ I+EA L++F++D I D I F+ KN I++ NK+D Sbjct: 288 -VEKIGVEKSKEKIDEADLVIFMLDLSRKIDEEDIEIMDFI--KNKKYIVLLNKLDLNKD 344 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + N + I LD K I++ S +++ G +EL I +F E+I N R++E+ Sbjct: 345 LNEENHF-IKELDSKYIIKTSVKNNSGLNELKECIKNLFFSGEIKSD-ELIVTNARHQEA 402 Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 52/168 (30%), Positives = 87/168 (51%), Gaps = 11/168 (6%) Query: 167 YPNHPLEMIENNKRNEESPK-----ENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLIN 221 YP LE I K + + +N+ S + K + + L +VG+PNVGKS+L+N Sbjct: 183 YPEDDLEEITGQKIKVDLKEIINKIDNLISASEEG-KILREGLNTVIVGKPNVGKSSLLN 241 Query: 222 RLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQ 281 L+ N+ + G TRD + N PI+I DTAG+R+ + E + V+KS + Sbjct: 242 ALINENKAIVTEIPGTTRDVIEEYINIDGIPIKIVDTAGIRETEDVVEKI---GVEKSKE 298 Query: 282 SVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSD 329 + + I +LD + +++D+ I+D + N + V+ LNK D+ D Sbjct: 299 KIDEADLVIFMLDLSRKIDEEDIEIMDFIKNKKYIVL--LNKLDLNKD 344 >gi|163784025|ref|ZP_02178984.1| tRNA modification GTPase [Hydrogenivirga sp. 128-5-R1-1] gi|159880710|gb|EDP74255.1| tRNA modification GTPase [Hydrogenivirga sp. 128-5-R1-1] Length = 270 Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 61/216 (28%), Positives = 113/216 (52%), Gaps = 23/216 (10%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K +++ +++A+ GRPNVGKS+L N L+GY R + G TRD + S+N P+++ D Sbjct: 32 KLVTEGIKLAIAGRPNVGKSSLFNALIGYERAIVSEIKGTTRDFIEESFNIHGIPVKLID 91 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ + +E+ ++K+ + ++ + + + DA ++D +I + + + + Sbjct: 92 TAGIREAG---DKIEKIGIEKTKEKIKEADIVLFVFDAYEGLTEEDFKIYEDIKH--KSP 146 Query: 318 VLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKL 377 ++ NK D++ DK + K++ I+ +T +T EG+ +L +L N L Sbjct: 147 IIVANKSDLLLDKYE-----KKYYFKDI-----IFTST---KTQEGIQELENKIL--NTL 191 Query: 378 WKTRITTS--YLNSWLQKTQLQNPPPTIFNRYNRLK 411 T T S Y+N Q T L+ + YN LK Sbjct: 192 GLTEDTDSEVYINIRHQ-TVLEKSLKLLEKIYNNLK 226 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 56/158 (35%), Positives = 88/158 (55%), Gaps = 11/158 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI G PNVGKS+LFN L+ + A+V G TRD + I+G+ ++DTAGI + Sbjct: 40 LAIAGRPNVGKSSLFNALIGYERAIVSEIKGTTRDFIEESFNIHGIPVKLIDTAGIREAG 99 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + I K ++T+ I EA ++LF+ D+ G+T D I ++ K+ P IIV+NK D Sbjct: 100 D-KIEKIGIEKTKEKIKEADIVLFVFDAYEGLTEEDFKIYEDIKHKS-P-IIVANKSDLL 156 Query: 125 IA--QRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 + ++ +Y FK+I+ S + G EL + I Sbjct: 157 LDKYEKKYY------FKDIIFTSTKTQEGIQELENKIL 188 >gi|67922416|ref|ZP_00515927.1| tRNA modification GTPase TrmE:Small GTP-binding protein domain:GTP-binding [Crocosphaera watsonii WH 8501] gi|67855760|gb|EAM51008.1| tRNA modification GTPase TrmE:Small GTP-binding protein domain:GTP-binding [Crocosphaera watsonii WH 8501] Length = 460 Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 57/189 (30%), Positives = 101/189 (53%), Gaps = 7/189 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKS+L N + A+V + PG TRD + Q ++ G+ ++DTAGI Sbjct: 228 VAIVGRPNVGKSSLLNAWSRSDRAIVTDLPGTTRDVIESQLVVGGIPIQVLDTAGIRQTT 287 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + K ++++LA ++A L+L +D+ + D+ I + + P+I+V NK+D Sbjct: 288 D-QVEKIGVERSQLAASQADLVLLTVDATVVWSNQDNEIYQAIEHR--PVILVINKID-- 342 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK-IFKQKYPNHPLEMIENNKRNEE 183 +A + + + EIV+ SA ++ G L + I K I + K L+ N +++ Sbjct: 343 LATPDLAQ-FPTQISEIVKTSAANNQGIEALETAILKAIHQDKLTASNLDFAINQRQSAA 401 Query: 184 SPKENITSE 192 + I+ E Sbjct: 402 LTRAKISLE 410 Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 41/128 (32%), Positives = 72/128 (56%), Gaps = 5/128 (3%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 L++A+VGRPNVGKS+L+N +R + G TRD + PI++ DTAG+R+ Sbjct: 226 LKVAIVGRPNVGKSSLLNAWSRSDRAIVTDLPGTTRDVIESQLVVGGIPIQVLDTAGIRQ 285 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 T+ +E+ V++S + + ++ +DAT+ + QD I ++ + V+L +NK Sbjct: 286 T---TDQVEKIGVERSQLAASQADLVLLTVDATVVWSNQDNEIYQAIEH--RPVILVINK 340 Query: 324 WDMVSDKL 331 D+ + L Sbjct: 341 IDLATPDL 348 >gi|168183721|ref|ZP_02618385.1| tRNA modification GTPase TrmE [Clostridium botulinum Bf] gi|237797100|ref|YP_002864652.1| tRNA modification GTPase TrmE [Clostridium botulinum Ba4 str. 657] gi|182673145|gb|EDT85106.1| tRNA modification GTPase TrmE [Clostridium botulinum Bf] gi|229263227|gb|ACQ54260.1| tRNA modification GTPase TrmE [Clostridium botulinum Ba4 str. 657] Length = 461 Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 62/180 (34%), Positives = 100/180 (55%), Gaps = 7/180 (3%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PNVGKS+L N L+ + A+V PG TRD + I+G+ IVDTAGI + ++ Sbjct: 228 IVGKPNVGKSSLLNALINENKAIVTEIPGTTRDVIEEYINIDGIPIKIVDTAGIRETEDV 287 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD--TR 124 + K ++++ I+EA L++F++D I D I F+ KN I++ NK+D Sbjct: 288 -VEKIGVEKSKEKIDEADLVIFMLDLSREIDEEDIEIMDFI--KNKKYIVLLNKLDLNKD 344 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + + N + I LD K I++ S +++ G +EL I +F E+I N R++E+ Sbjct: 345 LNEENHF-IKELDSKYIIKTSVKNNSGLNELKECIKNLFFSGEIKSD-ELIVTNARHQEA 402 Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 52/168 (30%), Positives = 87/168 (51%), Gaps = 11/168 (6%) Query: 167 YPNHPLEMIENNKRNEESPK-----ENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLIN 221 YP LE I K + + +N+ S + K + + L +VG+PNVGKS+L+N Sbjct: 183 YPEDDLEEITGQKIKVDLKEIINKIDNLISASEEG-KILREGLNTVIVGKPNVGKSSLLN 241 Query: 222 RLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQ 281 L+ N+ + G TRD + N PI+I DTAG+R+ + E + V+KS + Sbjct: 242 ALINENKAIVTEIPGTTRDVIEEYINIDGIPIKIVDTAGIRETEDVVEKI---GVEKSKE 298 Query: 282 SVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSD 329 + + I +LD + +++D+ I+D + N + V+ LNK D+ D Sbjct: 299 KIDEADLVIFMLDLSREIDEEDIEIMDFIKNKKYIVL--LNKLDLNKD 344 >gi|331268194|ref|YP_004394686.1| tRNA modification GTPase TrmE [Clostridium botulinum BKT015925] gi|329124744|gb|AEB74689.1| tRNA modification GTPase TrmE [Clostridium botulinum BKT015925] Length = 462 Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 66/206 (32%), Positives = 105/206 (50%), Gaps = 25/206 (12%) Query: 167 YPNHPLEMIENNKRNEESPKENITSE------GKSSVKNISKPLRIAVVGRPNVGKSTLI 220 YP LE + + + E K I SE + K + + L +VG+PNVGKS+++ Sbjct: 186 YPEDDLEEVTSERGKEAVDK--IVSEIDKLLNSANEGKILREGLNTVIVGKPNVGKSSIL 243 Query: 221 NRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSM 280 N LL R + G TRD + + + PI+I DTAG+R+ I E + V+KS Sbjct: 244 NALLMETRAIVTDIPGTTRDVIEEYMSIEGIPIKIVDTAGIRETDDIVEKI---GVEKSR 300 Query: 281 QSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTK 340 + + + T+++LD++ + +D I+D + + + V+ LNK DL TK Sbjct: 301 EKILNSDLTVLVLDSSRQLDAEDKEIIDFIKDKKYIVL--LNKI-----------DLDTK 347 Query: 341 AIK-NLPQIGDIYINTISGRTGEGLD 365 K +L ++ YI IS RTG+GLD Sbjct: 348 LDKESLNKLNSDYIIDISARTGKGLD 373 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 52/176 (29%), Positives = 89/176 (50%), Gaps = 4/176 (2%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PNVGKS++ N L+ + A+V + PG TRD + I G+ IVDTAGI + + Sbjct: 231 IVGKPNVGKSSILNALLMETRAIVTDIPGTTRDVIEEYMSIEGIPIKIVDTAGIRETDDI 290 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 + K +++ I + L + ++DS + D I F++ K +++ +DT++ Sbjct: 291 -VEKIGVEKSREKILNSDLTVLVLDSSRQLDAEDKEIIDFIKDKKYIVLLNKIDLDTKLD 349 Query: 127 QRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 + + ++ S D+ I++ISA G VI ++F MI N + E Sbjct: 350 KESLNKLNS-DY--IIDISARTGKGLDRFKEVIKELFFSGEVTSKDVMITNTRHKE 402 >gi|326793316|ref|YP_004311137.1| tRNA modification GTPase mnmE [Clostridium lentocellum DSM 5427] gi|326544080|gb|ADZ85939.1| tRNA modification GTPase mnmE [Clostridium lentocellum DSM 5427] Length = 460 Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 51/154 (33%), Positives = 88/154 (57%), Gaps = 3/154 (1%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AIVG PNVGKS+L N L+++ A+V + PG TRD + I+G+ F ++DTAGI + ++ Sbjct: 226 AIVGRPNVGKSSLLNALLEENKAIVTDIPGTTRDVVEAYLNIDGIPFQLLDTAGIRETED 285 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 + K ++++ +I EA L+L L+DS G+ D I ++ K++ I ++ I Sbjct: 286 I-VEKIGVERSKSSIEEADLVLMLVDSHVGLLDKDQEILEQVKNKHVIYIFNKTDLENNI 344 Query: 126 AQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVI 159 Q +S E++++SA+ G +EL + Sbjct: 345 TQEMLETHFS--NGEVIKVSAKEQSGLNELRQAM 376 Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 71/263 (26%), Positives = 121/263 (46%), Gaps = 28/263 (10%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K I + ++ A+VGRPNVGKS+L+N LL N+ + G TRD V N P ++ D Sbjct: 217 KMIREGVKTAIVGRPNVGKSSLLNALLEENKAIVTDIPGTTRDVVEAYLNIDGIPFQLLD 276 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ I E + V++S S+ + ++L+D+ + +D I++ V N V Sbjct: 277 TAGIRETEDIVEKI---GVERSKSSIEEADLVLMLVDSHVGLLDKDQEILEQVKN--KHV 331 Query: 318 VLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKL 377 + NK D+ + N+ Q++ N G++ +S + GL++L ++ K Sbjct: 332 IYIFNKTDLEN---NITQEMLETHFSN----GEVI--KVSAKEQSGLNELRQAM----KH 378 Query: 378 WKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRL-KYITQIQSSPPSFLI-------FCTF 429 + + + + N Q Q ++ N L K I I+ P + F Sbjct: 379 FVIKGSAAVHNEATISNQRQK--QSLINAIKSLEKVIDAIELGLPEDCLAIDLHDAFGHL 436 Query: 430 PNKIPESYKRYLINRLRINFSLS 452 + ES K +IN+L F L Sbjct: 437 GMIVGESLKEEIINQLFSRFCLG 459 >gi|15896965|ref|NP_350314.1| tRNA modification GTPase TrmE [Clostridium acetobutylicum ATCC 824] gi|21363021|sp|Q97CW2|MNME_CLOAB RecName: Full=tRNA modification GTPase mnmE gi|15026841|gb|AAK81654.1|AE007868_10 Predicted GTPase, ThdF family [Clostridium acetobutylicum ATCC 824] gi|325511142|gb|ADZ22778.1| tRNA modification GTPase TrmE [Clostridium acetobutylicum EA 2018] Length = 459 Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 4/176 (2%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 I+G PNVGKS+L N L+ +K A+V + PG TRD + I+G+ IVDTAGI + ++ Sbjct: 228 IIGKPNVGKSSLLNLLLDEKRAIVTDIPGTTRDVIEEYINISGIPIKIVDTAGIRETEDV 287 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 I K ++++ + A LI+F+IDS I D I +++ K I++ NK+D + Sbjct: 288 -IEKMGVERSKEKMENADLIIFMIDSSKKIDAEDLEIIDYIKDK--KYIVLLNKVDLK-N 343 Query: 127 QRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 + + ++ L+ I+E S + +G +L I +F H MI N + E Sbjct: 344 REDKSKLDLLNKDNIIEFSVKEKVGLEKLKDTIENMFATGNLQHSNTMITNTRHKE 399 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 41/129 (31%), Positives = 73/129 (56%), Gaps = 5/129 (3%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L ++G+PNVGKS+L+N LL R + G TRD + N PI+I D Sbjct: 218 KILREGLNTVIIGKPNVGKSSLLNLLLDEKRAIVTDIPGTTRDVIEEYINISGIPIKIVD 277 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ + +E+ V++S + + + I ++D++ + +DL I+D + + + V Sbjct: 278 TAGIRETEDV---IEKMGVERSKEKMENADLIIFMIDSSKKIDAEDLEIIDYIKDKKYIV 334 Query: 318 VLALNKWDM 326 + LNK D+ Sbjct: 335 L--LNKVDL 341 >gi|116620213|ref|YP_822369.1| tRNA modification GTPase TrmE [Candidatus Solibacter usitatus Ellin6076] gi|122255446|sp|Q02A42|MNME_SOLUE RecName: Full=tRNA modification GTPase mnmE gi|116223375|gb|ABJ82084.1| tRNA modification GTPase trmE [Candidatus Solibacter usitatus Ellin6076] Length = 444 Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 55/176 (31%), Positives = 89/176 (50%), Gaps = 27/176 (15%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + L +A+VGRPNVGKS+L NRLL +R + G TRD VS + P++++DTA Sbjct: 213 VHQGLTLAIVGRPNVGKSSLFNRLLEQDRAIVTEIPGTTRDVVSETAAIGGIPVKLYDTA 272 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R+ ESL +++S Q++ + +V+LD T P +D + + G ++ Sbjct: 273 GIRETEERVESL---GIERSYQAIVDSDLALVVLDLTRPVTAEDASL---IARAGARALI 326 Query: 320 ALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTI--SGRTGEGLDDLMVSVLE 373 NK D LP GD+ I S TG+G+ +L ++L+ Sbjct: 327 VANKCD-------------------LPAAGDVPAEAIPVSALTGQGVPELRSAILD 363 Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 81/164 (49%), Gaps = 14/164 (8%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AIVG PNVGKS+LFNRL+++ A+V PG TRD + A I G+ + DTAGI + Sbjct: 218 TLAIVGRPNVGKSSLFNRLLEQDRAIVTEIPGTTRDVVSETAAIGGIPVKLYDTAGIRET 277 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + + +++ AI ++ L L ++D +T D S + + +IV+NK D Sbjct: 278 EE-RVESLGIERSYQAIVDSDLALVVLDLTRPVTAED---ASLIARAGARALIVANKCDL 333 Query: 124 RIAQRNFYEIYSLDF-KEIVEISAEHDLGTSELHSVIFKIFKQK 166 A D E + +SA G EL S I K Sbjct: 334 PAAG---------DVPAEAIPVSALTGQGVPELRSAILDAVAPK 368 >gi|218248879|ref|YP_002374250.1| tRNA modification GTPase TrmE [Cyanothece sp. PCC 8801] gi|218169357|gb|ACK68094.1| tRNA modification GTPase TrmE [Cyanothece sp. PCC 8801] Length = 460 Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 55/160 (34%), Positives = 88/160 (55%), Gaps = 14/160 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKS+L N + A+V + PG TRD + Q I+ G+ ++DTAGI + Sbjct: 228 VAIVGRPNVGKSSLLNAWSRSDRAIVTDLPGTTRDVVESQLIVGGIPIQVLDTAGIRETA 287 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + K +++ ++A L+L ID++ G T D AI + + ++ P+I+V NK+D Sbjct: 288 D-RVEKLGVERSRHVASQADLVLLTIDAQMGWTTEDEAI--YQQVQHRPLILVINKIDLG 344 Query: 125 IAQRNFYEIYSLDF----KEIVEISAEHDLGTSELHSVIF 160 +A SL F K+IV+ A + G +L I Sbjct: 345 LAD-------SLSFIPQIKQIVKTVAAQNQGIEQLEKAIL 377 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 48/170 (28%), Positives = 90/170 (52%), Gaps = 19/170 (11%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 L++A+VGRPNVGKS+L+N +R + G TRD V PI++ DTAG+R+ Sbjct: 226 LKVAIVGRPNVGKSSLLNAWSRSDRAIVTDLPGTTRDVVESQLIVGGIPIQVLDTAGIRE 285 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 + + +E+ V++S + ++ +DA + + +D I V + ++L +NK Sbjct: 286 TA---DRVEKLGVERSRHVASQADLVLLTIDAQMGWTTEDEAIYQQVQH--RPLILVINK 340 Query: 324 WDM-VSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVL 372 D+ ++D L+ +PQI I + T++ + +G++ L ++L Sbjct: 341 IDLGLADSLSF-----------IPQIKQI-VKTVAAQN-QGIEQLEKAIL 377 >gi|227498804|ref|ZP_03928944.1| thiophene and furan oxidation protein thdF [Acidaminococcus sp. D21] gi|226904256|gb|EEH90174.1| thiophene and furan oxidation protein thdF [Acidaminococcus sp. D21] Length = 455 Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 48/128 (37%), Positives = 74/128 (57%), Gaps = 5/128 (3%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + LRIA+VGRPNVGKS+L+NRLL +R + + G TRD + P+ + DTA Sbjct: 215 LREGLRIAIVGRPNVGKSSLLNRLLQTDRAIVSNIPGTTRDIIEEQMTLDGIPLVLTDTA 274 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R + +EQ VK+S + E +V+LD+ P +D +++ +V N H V+ Sbjct: 275 GLRDTE---DYVEQIGVKRSRAILEDAELVLVVLDSASPLTDEDRKLLAAVKNRPHLVL- 330 Query: 320 ALNKWDMV 327 LNK D+ Sbjct: 331 -LNKSDLA 337 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 52/152 (34%), Positives = 88/152 (57%), Gaps = 6/152 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKS+L NRL++ A+V N PG TRD + Q ++G+ + DTAG+ D + Sbjct: 221 IAIVGRPNVGKSSLLNRLLQTDRAIVSNIPGTTRDIIEEQMTLDGIPLVLTDTAGLRDTE 280 Query: 65 NCSIAKQMNDQTELAINE-AHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + +Q+ + AI E A L+L ++DS + +T D + + + KN P +++ NK D Sbjct: 281 D--YVEQIGVKRSRAILEDAELVLVVLDSASPLTDEDRKLLAAV--KNRPHLVLLNKSDL 336 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 A + E+ +L +++ +S + G ++ Sbjct: 337 APAL-SREEVEALSGGDVLSLSVKDGAGMDQV 367 >gi|260890127|ref|ZP_05901390.1| hypothetical protein GCWU000323_01289 [Leptotrichia hofstadii F0254] gi|260860150|gb|EEX74650.1| GTP-binding protein Era [Leptotrichia hofstadii F0254] Length = 293 Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 67/220 (30%), Positives = 106/220 (48%), Gaps = 9/220 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 I IVG PNVGKSTL N+LVK+K+A+V + G TRD++ G I F VDT GI K Sbjct: 6 ITIVGRPNVGKSTLMNKLVKEKVAIVSDKAGTTRDQIKGIVNIGESQFIFVDTPGIHKPK 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + + M + A+ LI+F++D I+ D + +R PI++V NK+D Sbjct: 66 HL-LGEHMTNVALEALENVDLIMFMLDGTQEISTGDMFVNENVRSVKTPIVLVINKIDKM 124 Query: 125 IAQRNFYEIYSL-----DFKEIVEISAEHDLGTSELHSVIFKIFKQK---YPNHPLEMIE 176 + + + +F EI+ ++AE+ +G ++ V K YP + Sbjct: 125 SDEEIEEKKKEIREKLGEFDEIITLTAEYAIGIHKIFEVAEKYLSNDVWFYPEDYYTDLP 184 Query: 177 NNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGK 216 NK E+ +E I K + + I V +P + K Sbjct: 185 VNKIVVETVREKILHHTKDEIPHSVAVEIINVETKPTIRK 224 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 37/124 (29%), Positives = 64/124 (51%), Gaps = 3/124 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 I +VGRPNVGKSTL+N+L+ + ++G TRD + N DT G+ KP Sbjct: 6 ITIVGRPNVGKSTLMNKLVKEKVAIVSDKAGTTRDQIKGIVNIGESQFIFVDTPGIHKPK 65 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + L + +++++ + + +LD T D+ + ++V + +VL +NK D Sbjct: 66 HL---LGEHMTNVALEALENVDLIMFMLDGTQEISTGDMFVNENVRSVKTPIVLVINKID 122 Query: 326 MVSD 329 +SD Sbjct: 123 KMSD 126 >gi|154505900|ref|ZP_02042638.1| hypothetical protein RUMGNA_03442 [Ruminococcus gnavus ATCC 29149] gi|153793918|gb|EDN76338.1| hypothetical protein RUMGNA_03442 [Ruminococcus gnavus ATCC 29149] Length = 299 Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 56/163 (34%), Positives = 87/163 (53%), Gaps = 9/163 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + ++G PNVGKSTL N+L+ +K+A+ N P TR+R+ VDT GI K Sbjct: 10 VTLIGRPNVGKSTLMNQLIGQKIAITSNKPQTTRNRIQTVLTTEEGQIVFVDTPGIHKAK 69 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N + + M + E +NE ++L+L++ I + I L++ P+I+V NK+D Sbjct: 70 N-KLGEYMVNVAERTLNEVDVVLWLVEPSTFIGAGEKHIIEQLKRVKTPVILVINKID-- 126 Query: 125 IAQRN----FYEIY--SLDFKEIVEISAEHDLGTSELHSVIFK 161 + +R F + Y DF EIV +SA + T EL +VI K Sbjct: 127 MVKREEVLLFIDAYRKEYDFAEIVPVSARNGDNTDELVNVILK 169 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 42/168 (25%), Positives = 80/168 (47%), Gaps = 8/168 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 + ++GRPNVGKSTL+N+L+G +T ++ TR+ + + I DT G+ K Sbjct: 10 VTLIGRPNVGKSTLMNQLIGQKIAITSNKPQTTRNRIQTVLTTEEGQIVFVDTPGIHKAK 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + V + +++ + + L++ + + I++ + V+L +NK D Sbjct: 70 N---KLGEYMVNVAERTLNEVDVVLWLVEPSTFIGAGEKHIIEQLKRVKTPVILVINKID 126 Query: 326 MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 MV + L L A + +I +S R G+ D+L+ +L+ Sbjct: 127 MVKREEVL---LFIDAYRKEYDFAEIV--PVSARNGDNTDELVNVILK 169 >gi|20809125|ref|NP_624296.1| tRNA modification GTPase TrmE [Thermoanaerobacter tengcongensis MB4] gi|25009498|sp|Q8R6K8|MNME_THETN RecName: Full=tRNA modification GTPase mnmE gi|20517805|gb|AAM25900.1| predicted GTPase [Thermoanaerobacter tengcongensis MB4] Length = 460 Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 63/180 (35%), Positives = 95/180 (52%), Gaps = 8/180 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+K+ A+V + PG TRD + I G+ ++DTAGI Sbjct: 226 AIIGKPNVGKSSLLNALLKQNRAIVTDIPGTTRDVIEEYMNIKGIPIKLIDTAGIRHTDE 285 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD--T 123 + K ++++ + EA LILF++D+ +T D+ I L KN II V NK+D Sbjct: 286 L-VEKIGVEKSKEVLAEADLILFVLDASRDLTKEDYEIFDILSGKN--IIFVLNKVDLPK 342 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK-IFKQKYPNHPLEMIENNKRNE 182 +I + ++ IVE+S G +L S I+ +FK K E+I N + E Sbjct: 343 KIDEEELKKLVGNGI--IVEVSTVERTGLDKLESEIYNLVFKGKVSATEEEIITNARHRE 400 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 45/127 (35%), Positives = 72/127 (56%), Gaps = 5/127 (3%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 I + L+ A++G+PNVGKS+L+N LL NR + G TRD + N K PI++ DTA Sbjct: 219 IREGLKTAIIGKPNVGKSSLLNALLKQNRAIVTDIPGTTRDVIEEYMNIKGIPIKLIDTA 278 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R + E + V+KS + + + + +LDA+ K+D I D + +G ++ Sbjct: 279 GIRHTDELVEKI---GVEKSKEVLAEADLILFVLDASRDLTKEDYEIFDIL--SGKNIIF 333 Query: 320 ALNKWDM 326 LNK D+ Sbjct: 334 VLNKVDL 340 >gi|89075087|ref|ZP_01161528.1| GTP-binding protein Era [Photobacterium sp. SKA34] gi|90580326|ref|ZP_01236133.1| GTP-binding protein Era [Vibrio angustum S14] gi|89049174|gb|EAR54739.1| GTP-binding protein Era [Photobacterium sp. SKA34] gi|90438628|gb|EAS63812.1| GTP-binding protein Era [Vibrio angustum S14] Length = 301 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 56/170 (32%), Positives = 91/170 (53%), Gaps = 10/170 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL NRLV +K+++ P TR R+ G +G VDT G+ + Sbjct: 10 IAIVGRPNVGKSTLLNRLVGQKLSITSRKPQTTRHRIMGVDTRDGYQAVYVDTPGLHIEE 69 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN ++ + L+LFL+D T D + + L K +P +++ NK+D Sbjct: 70 KRTINRLMNRAASSSLTDVELVLFLVDGTMW-TADDEMVLNKLAKSQLPTVLLVNKVDNV 128 Query: 125 IAQRNFY----EIYS-LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPN 169 + + E+ S ++F +++ +SA+H GT+ + KI +Q P Sbjct: 129 KDKHELFPHLQELASKMEFVDVIPVSAKH--GTN--IDAVEKIVRQHLPE 174 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 45/139 (32%), Positives = 68/139 (48%), Gaps = 8/139 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMR-KP 264 IA+VGRPNVGKSTL+NRL+G +T + TR + + DT G+ + Sbjct: 10 IAIVGRPNVGKSTLLNRLVGQKLSITSRKPQTTRHRIMGVDTRDGYQAVYVDTPGLHIEE 69 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 R L + S+ V E + L+D T+ + D +++ + + VL +NK Sbjct: 70 KRTINRLMNRAASSSLTDV---ELVLFLVDGTM-WTADDEMVLNKLAKSQLPTVLLVNKV 125 Query: 325 DMVSDKLNL---LQDLRTK 340 D V DK L LQ+L +K Sbjct: 126 DNVKDKHELFPHLQELASK 144 >gi|227495128|ref|ZP_03925444.1| GTP-binding protein Era [Actinomyces coleocanis DSM 15436] gi|226831580|gb|EEH63963.1| GTP-binding protein Era [Actinomyces coleocanis DSM 15436] Length = 352 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 58/183 (31%), Positives = 92/183 (50%), Gaps = 9/183 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFN--IVDTAGIAD 62 IAIVG PNVGKSTL N LV +K+A+ P TR + G +++G + +VDT G Sbjct: 60 IAIVGRPNVGKSTLTNALVGEKIAITSMRPETTRHNVRG--VVHGDDYQLVLVDTPGYHR 117 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + + +++N+ +++E +I+F + S I P D I LR PI+ V+ K D Sbjct: 118 PRTL-LGRRLNEMVRESLSEVDVIVFCLPSDQKIGPGDEFIARQLRGLRAPIVAVATKTD 176 Query: 123 TRIAQRNFYEIYSL----DFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 R + + DFKEIV +SA D L V+ + + P +P ++ + Sbjct: 177 KVAPPRLMEHLMDIDKLGDFKEIVPVSAHKDRQIDVLKEVLANLMPKCPPLYPQDIYSDE 236 Query: 179 KRN 181 R+ Sbjct: 237 PRD 239 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 43/78 (55%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA+VGRPNVGKSTL N L+G +T + TR +V + ++ + + DT G +P Sbjct: 60 IAIVGRPNVGKSTLTNALVGEKIAITSMRPETTRHNVRGVVHGDDYQLVLVDTPGYHRPR 119 Query: 266 RITESLEQKTVKKSMQSV 283 + + V++S+ V Sbjct: 120 TLLGRRLNEMVRESLSEV 137 >gi|167749633|ref|ZP_02421760.1| hypothetical protein EUBSIR_00591 [Eubacterium siraeum DSM 15702] gi|167657386|gb|EDS01516.1| hypothetical protein EUBSIR_00591 [Eubacterium siraeum DSM 15702] gi|291530788|emb|CBK96373.1| GTP-binding protein Era [Eubacterium siraeum 70/3] gi|291557707|emb|CBL34824.1| GTP-binding protein Era [Eubacterium siraeum V10Sc8a] Length = 302 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 51/167 (30%), Positives = 86/167 (51%), Gaps = 10/167 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI G PN GKSTL N LV +K+A+V + P TR R+ G + +DT G+ K Sbjct: 9 VAIAGRPNAGKSTLTNYLVGEKIAIVSDKPQTTRTRINGVLTKGETQYVFIDTPGMHKAK 68 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N ++ QM ++ + +IL + D+ I+P +H + + + ++++ NK+D Sbjct: 69 N-KLSDQMLKSIRESVTDVDVILMMADATKKISPIEHNLIDSFKDRKTDVVLLINKVDLV 127 Query: 125 IAQ-------RNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFK 164 + + + E+Y DFKEI+ IS +G E+ VI + K Sbjct: 128 KDKSELLSLIKEYSELY--DFKEIIPISVRQRIGVEEIMPVIDRYVK 172 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 51/171 (29%), Positives = 78/171 (45%), Gaps = 9/171 (5%) Query: 199 NISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDT 258 N K + +A+ GRPN GKSTL N L+G + + TR ++ DT Sbjct: 2 NNPKSVFVAIAGRPNAGKSTLTNYLVGEKIAIVSDKPQTTRTRINGVLTKGETQYVFIDT 61 Query: 259 AGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVV 318 GM K L + +K +SV + +++ DAT + ++DS + VV Sbjct: 62 PGMHKAKN---KLSDQMLKSIRESVTDVDVILMMADATKKISPIEHNLIDSFKDRKTDVV 118 Query: 319 LALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDI-YINTISGRTGEGLDDLM 368 L +NK D+V DK LL IK ++ D I IS R G++++M Sbjct: 119 LLINKVDLVKDKSELLS-----LIKEYSELYDFKEIIPISVRQRIGVEEIM 164 >gi|33866852|ref|NP_898411.1| tRNA modification GTPase TrmE [Synechococcus sp. WH 8102] gi|46577381|sp|Q7U3V6|MNME_SYNPX RecName: Full=tRNA modification GTPase mnmE gi|33639453|emb|CAE08837.1| putative thiophen / furan oxidation protein [Synechococcus sp. WH 8102] Length = 450 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 46/119 (38%), Positives = 75/119 (63%), Gaps = 4/119 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKS+L NRL +++ A+V PG TRD L + ++ GV ++DTAGI Sbjct: 224 VALVGRPNVGKSSLLNRLSRRERAIVTELPGTTRDLLESEIVLEGVPITLLDTAGIRSTD 283 Query: 65 NCSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + +Q+ ++E A+ A ++L ++D AG T D A+ + + ++IP I+V+NK D Sbjct: 284 DA--VEQLGIARSEEALATADVVLLVLDGHAGWTAEDAALLARI-PEHIPRILVANKAD 339 Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 51/170 (30%), Positives = 90/170 (52%), Gaps = 21/170 (12%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 LR+A+VGRPNVGKS+L+NRL R + G TRD + + PI + DTAG+R Sbjct: 222 LRVALVGRPNVGKSSLLNRLSRRERAIVTELPGTTRDLLESEIVLEGVPITLLDTAGIRS 281 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 +++EQ + +S +++ T + +++LD + +D ++ + +++A NK Sbjct: 282 TD---DAVEQLGIARSEEALATADVVLLVLDGHAGWTAEDAALLARIPEHIPRILVA-NK 337 Query: 324 WDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 D+ + LPQ D+ ++ + G TGE +DL+ ++LE Sbjct: 338 ADLPAGA--------------LPQPVDVQLSALEG-TGE--EDLVQALLE 370 >gi|254520702|ref|ZP_05132758.1| tRNA modification GTPase TrmE [Clostridium sp. 7_2_43FAA] gi|226914451|gb|EEH99652.1| tRNA modification GTPase TrmE [Clostridium sp. 7_2_43FAA] Length = 459 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 47/134 (35%), Positives = 80/134 (59%), Gaps = 5/134 (3%) Query: 193 GKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHP 252 G K I L +A+VG+PNVGKS+L+N LL R + +G TRD + N P Sbjct: 215 GADEGKIIRDGLSLAIVGKPNVGKSSLLNVLLKEKRAIVTDIAGTTRDVIEEYINLDGIP 274 Query: 253 IEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFN 312 ++I DTAG+R+ I E + V+KS + + + +++LD++ +K+D+ I++++ N Sbjct: 275 VKIIDTAGIRETEDIVEKI---GVEKSKEKINEADLVLLVLDSSRELDKEDIEIIEAIKN 331 Query: 313 TGHAVVLALNKWDM 326 +++VL LNK D+ Sbjct: 332 K-NSIVL-LNKIDL 343 Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 54/164 (32%), Positives = 94/164 (57%), Gaps = 14/164 (8%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 ++AIVG PNVGKS+L N L+K+K A+V + G TRD + ++G+ I+DTAGI + Sbjct: 227 SLAIVGKPNVGKSSLLNVLLKEKRAIVTDIAGTTRDVIEEYINLDGIPVKIIDTAGIRET 286 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIII----VSN 119 ++ + K ++++ INEA L+L ++DS + D I ++ KN +++ + N Sbjct: 287 EDI-VEKIGVEKSKEKINEADLVLLVLDSSRELDKEDIEIIEAIKNKNSIVLLNKIDLEN 345 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 K+D + +F+ I++ISA+ D+G L + I +F Sbjct: 346 KLDKSLLN---------NFENIIKISAKEDVGIDGLKNEIKNMF 380 >gi|168705339|ref|ZP_02737616.1| tRNA modification GTPase TrmE [Gemmata obscuriglobus UQM 2246] Length = 275 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 56/190 (29%), Positives = 94/190 (49%), Gaps = 19/190 (10%) Query: 172 LEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLT 231 L ++E + R P + G + +++ +P ++ + G PNVGKS+LIN L GY R + Sbjct: 39 LALLETDPRAAAFPLHRLAELGDTVGRHLIEPWKVVIAGAPNVGKSSLINALAGYQRAVV 98 Query: 232 GSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIV 291 +G TRD+VS+ + P+E+ DTAG+R E LE + + ++ +++ + + Sbjct: 99 SDVAGTTRDTVSVRTAFDGWPVELIDTAGIRD----AEGLEAEGIARAKRALDEADLVVW 154 Query: 292 LLD-ATIPFEKQDLRIVDSVFNTGHAVVLALNKWD------MVSDKL-----NLLQDLRT 339 +LD A + E + V N A+V N+ D +VS + NL DL T Sbjct: 155 VLDGAALRLEWPGAGRLHVVINKSDALV---NRNDIARTLPLVSARTGEGVQNLANDLVT 211 Query: 340 KAIKNLPQIG 349 K + P G Sbjct: 212 KLVPQPPAAG 221 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 32/92 (34%), Positives = 54/92 (58%), Gaps = 2/92 (2%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + + I GAPNVGKS+L N L + AVV + G TRD + + +G ++DTAGI D Sbjct: 71 WKVVIAGAPNVGKSSLINALAGYQRAVVSDVAGTTRDTVSVRTAFDGWPVELIDTAGIRD 130 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKA 94 + + + + + A++EA L+++++D A Sbjct: 131 AEG--LEAEGIARAKRALDEADLVVWVLDGAA 160 >gi|207091818|ref|ZP_03239605.1| tRNA modification GTPase TrmE [Helicobacter pylori HPKX_438_AG0C1] Length = 450 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 72/122 (59%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +++VG+PN GKS+L+N +L R L G TRD++ K H + + DTAG+R+ + Sbjct: 216 LSIVGKPNAGKSSLLNAMLLEERALVSDIKGTTRDTIEEVIELKGHKVRLIDTAGIRESA 275 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + +E+ ++KS++S+ C+ + + D + P EK+D +++++ ++ LNK D Sbjct: 276 ---DKIERLGIEKSLKSLENCDIILGVFDLSKPLEKEDFNLIETLNRAKKPCIVVLNKND 332 Query: 326 MV 327 + Sbjct: 333 LA 334 Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 62/120 (51%), Gaps = 1/120 (0%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + ++IVG PN GKS+L N ++ ++ A+V + G TRD + + G ++DTAGI + Sbjct: 214 HALSIVGKPNAGKSSLLNAMLLEERALVSDIKGTTRDTIEEVIELKGHKVRLIDTAGIRE 273 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + I + +++ ++ +IL + D + D + L + P I+V NK D Sbjct: 274 SAD-KIERLGIEKSLKSLENCDIILGVFDLSKPLEKEDFNLIETLNRAKKPCIVVLNKND 332 >gi|110802832|ref|YP_699904.1| tRNA modification GTPase TrmE [Clostridium perfringens SM101] gi|123047103|sp|Q0SPQ3|MNME_CLOPS RecName: Full=tRNA modification GTPase mnmE gi|110683333|gb|ABG86703.1| tRNA modification GTPase TrmE [Clostridium perfringens SM101] Length = 458 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 52/170 (30%), Positives = 92/170 (54%), Gaps = 17/170 (10%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K I L + +VG+PNVGKS+L+N LL NR + +G TRD + N P+ + D Sbjct: 219 KLIRDGLSMVIVGKPNVGKSSLLNALLNENRAIVTDIAGTTRDVIEEYINLDGIPVRLVD 278 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ + E + V+KS + + + I++LD + +++D I+D + + + V Sbjct: 279 TAGIRETEDVVEKI---GVEKSKEKINEADLVILMLDTSRELDEEDKEIIDYIKDRKYIV 335 Query: 318 VLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDL 367 +L +K++L + L ++ + NL + +S +TG G+DDL Sbjct: 336 LL---------NKVDLDRKLSSEIVDNLENKIE-----LSAKTGFGIDDL 371 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 51/179 (28%), Positives = 97/179 (54%), Gaps = 6/179 (3%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 ++ IVG PNVGKS+L N L+ + A+V + G TRD + ++G+ +VDTAGI + Sbjct: 226 SMVIVGKPNVGKSSLLNALLNENRAIVTDIAGTTRDVIEEYINLDGIPVRLVDTAGIRET 285 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 ++ + K ++++ INEA L++ ++D+ + D I +++ + I++ NK+D Sbjct: 286 EDV-VEKIGVEKSKEKINEADLVILMLDTSRELDEEDKEIIDYIKDR--KYIVLLNKVD- 341 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 + ++ EI + + +E+SA+ G +L S I +F + M+ N + E Sbjct: 342 -LDRKLSSEIVD-NLENKIELSAKTGFGIDDLKSKIKDLFFNGSIDAESVMVTNTRHKE 398 >gi|329565815|gb|AEB92244.1| tRNA modification GTPase [Thermoanaerobacter thermohydrosulfuricus] Length = 404 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 60/177 (33%), Positives = 89/177 (50%), Gaps = 14/177 (7%) Query: 173 EMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTG 232 EM+E K E + I S V I + L+ A++G+PNVGKS+L+N LL NR + Sbjct: 159 EMLETAKEIVEDIDKLIVSSESGRV--IREGLKTAIIGKPNVGKSSLLNALLKENRAIVT 216 Query: 233 SQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVL 292 G TRD + N K PI++ DTAG+R + E + V KS + + + + + Sbjct: 217 DIPGTTRDIIEEYVNVKGIPIKLIDTAGIRDTDELVEKI---GVAKSKEVLAEADLILFV 273 Query: 293 LDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIG 349 LDA+ K+D I D + G +V LNK D L + + K +KNL + G Sbjct: 274 LDASRELTKEDYEIFDIL--VGKNIVFVLNKID-------LPKKIDEKELKNLTKDG 321 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 60/180 (33%), Positives = 95/180 (52%), Gaps = 8/180 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+K+ A+V + PG TRD + + G+ ++DTAGI D Sbjct: 191 AIIGKPNVGKSSLLNALLKENRAIVTDIPGTTRDIIEEYVNVKGIPIKLIDTAGIRDTDE 250 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD--T 123 + K +++ + EA LILF++D+ +T D+ I L KNI + V NK+D Sbjct: 251 L-VEKIGVAKSKEVLAEADLILFVLDASRELTKEDYEIFDILVGKNI--VFVLNKIDLPK 307 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK-IFKQKYPNHPLEMIENNKRNE 182 +I ++ + I+E+S +G EL I+ +FK E+I N++ E Sbjct: 308 KIDEKELKNLTKDGI--IIEVSPVEKIGLQELEDTIYNLVFKGNINVKEDEIITNSRHKE 365 >gi|307265442|ref|ZP_07546998.1| tRNA modification GTPase TrmE [Thermoanaerobacter wiegelii Rt8.B1] gi|306919556|gb|EFN49774.1| tRNA modification GTPase TrmE [Thermoanaerobacter wiegelii Rt8.B1] Length = 462 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 60/177 (33%), Positives = 89/177 (50%), Gaps = 14/177 (7%) Query: 173 EMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTG 232 EM+E K E + I S V I + L+ A++G+PNVGKS+L+N LL NR + Sbjct: 196 EMLETAKEIVEDIDKLIVSSESGRV--IREGLKTAIIGKPNVGKSSLLNALLKENRAIVT 253 Query: 233 SQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVL 292 G TRD + N K PI++ DTAG+R + E + V KS + + + + + Sbjct: 254 DIPGTTRDIIEEYVNVKGIPIKLIDTAGIRDTDELVEKI---GVAKSKEVLAEADLILFV 310 Query: 293 LDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIG 349 LDA+ K+D I D + G +V LNK D L + + K +KNL + G Sbjct: 311 LDASRELTKEDYEIFDIL--VGKNIVFVLNKID-------LPKKIDEKELKNLTKDG 358 Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 60/180 (33%), Positives = 95/180 (52%), Gaps = 8/180 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+K+ A+V + PG TRD + + G+ ++DTAGI D Sbjct: 228 AIIGKPNVGKSSLLNALLKENRAIVTDIPGTTRDIIEEYVNVKGIPIKLIDTAGIRDTDE 287 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD--T 123 + K +++ + EA LILF++D+ +T D+ I L KN I+ V NK+D Sbjct: 288 L-VEKIGVAKSKEVLAEADLILFVLDASRELTKEDYEIFDILVGKN--IVFVLNKIDLPK 344 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK-IFKQKYPNHPLEMIENNKRNE 182 +I ++ + I+E+S +G EL I+ +FK E+I N++ E Sbjct: 345 KIDEKELKNLTKDGI--IIEVSTVEKIGLQELEDTIYNLVFKGNINVKEDEIITNSRHKE 402 >gi|331004918|ref|ZP_08328332.1| GTP-binding protein Era [gamma proteobacterium IMCC1989] gi|330421268|gb|EGG95520.1| GTP-binding protein Era [gamma proteobacterium IMCC1989] Length = 299 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 46/119 (38%), Positives = 67/119 (56%), Gaps = 1/119 (0%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N ++ +K+++ P TR +L G F VDT G+ G+ Sbjct: 11 IAIVGRPNVGKSTLLNHILGQKLSITSRKPQTTRHKLLGIKTTEDTQFIYVDTPGLHQGQ 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 +I + MN AI + ++LF+I+ K P D A+ L + P+I+V NK+DT Sbjct: 71 KKAINRYMNRAVTTAIQDVDVVLFMIE-KLQWLPEDEAVAQRLAEIKSPVILVINKVDT 128 Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust. Identities = 44/171 (25%), Positives = 76/171 (44%), Gaps = 9/171 (5%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 KN + IA+VGRPNVGKSTL+N +LG +T + TR + ++ D Sbjct: 3 KNAHRCGYIAIVGRPNVGKSTLLNHILGQKLSITSRKPQTTRHKLLGIKTTEDTQFIYVD 62 Query: 258 TAGMRK-PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHA 316 T G+ + + + V ++Q V ++ + + + +D + + Sbjct: 63 TPGLHQGQKKAINRYMNRAVTTAIQDV----DVVLFMIEKLQWLPEDEAVAQRLAEIKSP 118 Query: 317 VVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDL 367 V+L +NK D + DK LL ++ K L Q+ + +S + LD L Sbjct: 119 VILVINKVDTIDDKETLLPHMQ----KLLEQVNVQEVIPVSALNNQNLDRL 165 >gi|262278197|ref|ZP_06055982.1| GTP-binding protein16S rRNA-binding,ribosome-associated GTPase [Acinetobacter calcoaceticus RUH2202] gi|262258548|gb|EEY77281.1| GTP-binding protein16S rRNA-binding,ribosome-associated GTPase [Acinetobacter calcoaceticus RUH2202] Length = 342 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 56/178 (31%), Positives = 89/178 (50%), Gaps = 6/178 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N L+ +K+++ P TR ++ G + VDT G+ + Sbjct: 42 VAIVGRPNVGKSTLMNHLLGQKLSITSRKPQTTRHKIIGIDSREKMQAVYVDTPGMHKKE 101 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I K MN A+ + +L+LF+ID+ TP D + L+ +P+I+V NK DT Sbjct: 102 VRAINKMMNRAAHSALRDVNLVLFVIDAYKW-TPNDDLVLEKLKNAEMPVILVINKADTF 160 Query: 125 IAQRNFYEIYS-----LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 +R+ + ++F EIV +SA L I K + P + + I + Sbjct: 161 EDKRDILPLIQERAKLMNFAEIVPVSALRGANLEHLSETIEKYLPYQAPLYSFDQITD 218 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/137 (29%), Positives = 71/137 (51%), Gaps = 5/137 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS-VSISWNWKNHPIEIFDTAGMRKP 264 +A+VGRPNVGKSTL+N LLG +T + TR + I K + + DT GM K Sbjct: 42 VAIVGRPNVGKSTLMNHLLGQKLSITSRKPQTTRHKIIGIDSREKMQAVYV-DTPGMHK- 99 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 + ++ + + + ++R + ++DA DL +++ + N V+L +NK Sbjct: 100 -KEVRAINKMMNRAAHSALRDVNLVLFVIDAYKWTPNDDL-VLEKLKNAEMPVILVINKA 157 Query: 325 DMVSDKLNLLQDLRTKA 341 D DK ++L ++ +A Sbjct: 158 DTFEDKRDILPLIQERA 174 >gi|253581692|ref|ZP_04858916.1| GTP binding protein [Fusobacterium varium ATCC 27725] gi|251836041|gb|EES64578.1| GTP binding protein [Fusobacterium varium ATCC 27725] Length = 297 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 56/176 (31%), Positives = 90/176 (51%), Gaps = 7/176 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTL N+LV +K+A+V + G TRD + G +N + +DT GI K Sbjct: 6 IAVVGRPNVGKSTLINKLVSEKVAIVSDKAGTTRDNIKGILNLNDNQYIFIDTPGIHKAK 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITS-FLRKKNIPIIIVSNKMD- 122 + + + M + + + +ILFL+D I+ D + + K P I+V NK+D Sbjct: 66 HL-LGEYMTNSAIRVLKDVDVILFLLDGSQEISTGDQFVMERVMEAKKTPRILVINKIDK 124 Query: 123 ----TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEM 174 +A+R + +F +VEIS ++ G L I ++ +P +M Sbjct: 125 LSDEQLVAKREEVKEKLGEFDAVVEISGQYAFGLPRLLEAIEPFMEEGIKYYPDDM 180 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/126 (30%), Positives = 65/126 (51%), Gaps = 4/126 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IAVVGRPNVGKSTLIN+L+ + ++G TRD++ N ++ DT G+ K Sbjct: 6 IAVVGRPNVGKSTLINKLVSEKVAIVSDKAGTTRDNIKGILNLNDNQYIFIDTPGIHKAK 65 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHA-VVLALNKW 324 + L + +++ ++ + + LLD + D +++ V +L +NK Sbjct: 66 HL---LGEYMTNSAIRVLKDVDVILFLLDGSQEISTGDQFVMERVMEAKKTPRILVINKI 122 Query: 325 DMVSDK 330 D +SD+ Sbjct: 123 DKLSDE 128 >gi|148266438|ref|YP_001233144.1| tRNA modification GTPase TrmE [Geobacter uraniireducens Rf4] gi|205829152|sp|A5G9V3|MNME_GEOUR RecName: Full=tRNA modification GTPase mnmE gi|146399938|gb|ABQ28571.1| tRNA modification GTPase trmE [Geobacter uraniireducens Rf4] Length = 455 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 53/182 (29%), Positives = 98/182 (53%), Gaps = 22/182 (12%) Query: 192 EGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNH 251 EGK +S + + G+PNVGKS+L+N LL R + S G TRD + K Sbjct: 213 EGKVLRDGVS----VVIAGKPNVGKSSLLNTLLREKRAIVTSVPGTTRDLIEEVVTIKGL 268 Query: 252 PIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVF 311 P+++ DTAG+R+ + +E++ +K S+ + + + + ++D+++PF +D I+D Sbjct: 269 PVKLLDTAGIRESD---DRVEREGIKLSLDKIPSADLVLFIIDSSLPFSSEDQAILD--- 322 Query: 312 NTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSV 371 VLA + +V +K ++ + ++PQ+ D+ I +S TG+G+D L ++ Sbjct: 323 ------VLAPCNFIVVMNKSDICRSF------DMPQLPDVPIIAVSTLTGDGIDALQDAI 370 Query: 372 LE 373 E Sbjct: 371 FE 372 Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 56/170 (32%), Positives = 86/170 (50%), Gaps = 10/170 (5%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 ++ I G PNVGKS+L N L+++K A+V + PG TRD + I G+ ++DTAGI + Sbjct: 222 SVVIAGKPNVGKSSLLNTLLREKRAIVTSVPGTTRDLIEEVVTIKGLPVKLLDTAGIRES 281 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + + ++ + I A L+LF+IDS + D AI L N I+V NK D Sbjct: 282 DD-RVEREGIKLSLDKIPSADLVLFIIDSSLPFSSEDQAILDVLAPCN--FIVVMNKSDI 338 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLE 173 R+F ++ L I+ +S G L IF+ F NH ++ Sbjct: 339 ---CRSF-DMPQLPDVPIIAVSTLTGDGIDALQDAIFEAFIH---NHAVD 381 >gi|329565793|gb|AEB92233.1| tRNA modification GTPase [Thermoanaerobacter thermohydrosulfuricus] gi|329565813|gb|AEB92243.1| tRNA modification GTPase [Thermoanaerobacter thermohydrosulfuricus] Length = 404 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 60/180 (33%), Positives = 95/180 (52%), Gaps = 8/180 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+K+ A+V + PG TRD + + G+ ++DTAGI D Sbjct: 191 AIIGKPNVGKSSLLNALLKENRAIVTDIPGTTRDIIEEYVNVKGIPIKLIDTAGIRDTDE 250 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD--T 123 + K +++ + EA LILF++D+ +T D+ I L KN I+ V NK+D Sbjct: 251 L-VEKIGVAKSKEVLAEADLILFVLDASRELTKEDYEIFDILVGKN--IVFVLNKIDLPK 307 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK-IFKQKYPNHPLEMIENNKRNE 182 +I ++ + I+E+S +G EL I+ +FK E+I N++ E Sbjct: 308 KIDEKELKNLTKDGI--IIEVSTVEKIGLQELEDTIYNLVFKGNINVKEDEIITNSRHKE 365 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 61/188 (32%), Positives = 94/188 (50%), Gaps = 18/188 (9%) Query: 167 YPNHPLEMIENNKRNEESPKENITSEGK-----SSVKNISKPLRIAVVGRPNVGKSTLIN 221 +P +E +E K E+ KE + K S + I + L+ A++G+PNVGKS+L+N Sbjct: 147 FPEDDVEELER-KEMLETAKEIVKDIDKLIVSSESGRVIREGLKTAIIGKPNVGKSSLLN 205 Query: 222 RLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQ 281 LL NR + G TRD + N K PI++ DTAG+R + E + V KS + Sbjct: 206 ALLKENRAIVTDIPGTTRDIIEEYVNVKGIPIKLIDTAGIRDTDELVEKI---GVAKSKE 262 Query: 282 SVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKA 341 + + + +LDA+ K+D I D + G +V LNK D L + + K Sbjct: 263 VLAEADLILFVLDASRELTKEDYEIFDIL--VGKNIVFVLNKID-------LPKKIDEKE 313 Query: 342 IKNLPQIG 349 +KNL + G Sbjct: 314 LKNLTKDG 321 >gi|329565799|gb|AEB92236.1| tRNA modification GTPase [Thermoanaerobacter thermohydrosulfuricus] gi|329565803|gb|AEB92238.1| tRNA modification GTPase [Thermoanaerobacter thermohydrosulfuricus] gi|329565805|gb|AEB92239.1| tRNA modification GTPase [Thermoanaerobacter thermohydrosulfuricus] Length = 404 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 60/177 (33%), Positives = 89/177 (50%), Gaps = 14/177 (7%) Query: 173 EMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTG 232 EM+E K E + I S V I + L+ A++G+PNVGKS+L+N LL NR + Sbjct: 159 EMLETAKEIVEDIDKLIVSSESGRV--IREGLKTAIIGKPNVGKSSLLNALLKENRAIVT 216 Query: 233 SQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVL 292 G TRD + N K PI++ DTAG+R + E + V KS + + + + + Sbjct: 217 DIPGTTRDIIEEYVNVKGIPIKLIDTAGIRDTDELVEKI---GVAKSKEVLAEADLILFV 273 Query: 293 LDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIG 349 LDA+ K+D I D + G +V LNK D L + + K +KNL + G Sbjct: 274 LDASRELTKEDYEIFDIL--VGKNIVFVLNKID-------LPKKIDEKELKNLTKDG 321 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 60/180 (33%), Positives = 95/180 (52%), Gaps = 8/180 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+K+ A+V + PG TRD + + G+ ++DTAGI D Sbjct: 191 AIIGKPNVGKSSLLNALLKENRAIVTDIPGTTRDIIEEYVNVKGIPIKLIDTAGIRDTDE 250 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD--T 123 + K +++ + EA LILF++D+ +T D+ I L KN I+ V NK+D Sbjct: 251 L-VEKIGVAKSKEVLAEADLILFVLDASRELTKEDYEIFDILVGKN--IVFVLNKIDLPK 307 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK-IFKQKYPNHPLEMIENNKRNE 182 +I ++ + I+E+S +G EL I+ +FK E+I N++ E Sbjct: 308 KIDEKELKNLTKDGI--IIEVSTVEKIGLQELEDTIYNLVFKGNINVKEDEIITNSRHKE 365 >gi|205422392|sp|Q0AE55|MNME_NITEC RecName: Full=tRNA modification GTPase mnmE Length = 451 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 42/118 (35%), Positives = 71/118 (60%), Gaps = 2/118 (1%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + + G PNVGKS+L NRL ++A+V PG TRD + I G+ +++DTAG+ + Sbjct: 218 VVLTGQPNVGKSSLLNRLAGDEIAIVTEIPGTTRDTIRQSIEIEGIPLHLIDTAGLRETS 277 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + + + + AI +A L+L L+D + G+T DH++ + L K +P++ V NK+D Sbjct: 278 DI-VEQHGIARAYAAIEQADLVLLLVDGRYGVTKEDHSVLARL-PKELPVLTVHNKID 333 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 53/224 (23%), Positives = 105/224 (46%), Gaps = 25/224 (11%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + +++ + G+PNVGKS+L+NRL G + G TRD++ S + P+ + DTA Sbjct: 212 LQEGIKVVLTGQPNVGKSSLLNRLAGDEIAIVTEIPGTTRDTIRQSIEIEGIPLHLIDTA 271 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R+ S I +EQ + ++ ++ + ++L+D K+D ++ + V+ Sbjct: 272 GLRETSDI---VEQHGIARAYAAIEQADLVLLLVDGRYGVTKEDHSVL-ARLPKELPVLT 327 Query: 320 ALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWK 379 NK D+ + +D AI +S ++GEG+ +L+ +VL W+ Sbjct: 328 VHNKIDLSGQLSRIEEDTSGTAIY------------LSVKSGEGI-ELLRTVLLKTVGWQ 374 Query: 380 TRITTS--------YLNSWLQKTQLQNPPPTIFNRYNRLKYITQ 415 T I +L + L +L T + ++L+ + + Sbjct: 375 TNIAGEGAYMARQRHLQALLHAKELLKRAETWLHTADQLEILAE 418 >gi|217033917|ref|ZP_03439341.1| hypothetical protein HP9810_870g49 [Helicobacter pylori 98-10] gi|216943680|gb|EEC23125.1| hypothetical protein HP9810_870g49 [Helicobacter pylori 98-10] Length = 450 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 72/122 (59%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +++VG+PN GKS+L+N +L R L G TRD++ + H + + DTAG+R+ + Sbjct: 216 LSIVGKPNAGKSSLLNAMLLEERALVSDIKGTTRDTIEEVIELQGHKVRLIDTAGIRESA 275 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + +E+ ++KS++S+ C+ + + D + P E++D ++D++ ++ LNK D Sbjct: 276 ---DKIERLGIEKSLKSLENCDIVLGVFDLSKPLEQEDFNLIDTLNRAKKPCIVVLNKND 332 Query: 326 MV 327 + Sbjct: 333 LA 334 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 63/120 (52%), Gaps = 1/120 (0%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 +T++IVG PN GKS+L N ++ ++ A+V + G TRD + + G ++DTAGI + Sbjct: 214 HTLSIVGKPNAGKSSLLNAMLLEERALVSDIKGTTRDTIEEVIELQGHKVRLIDTAGIRE 273 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + I + +++ ++ ++L + D + D + L + P I+V NK D Sbjct: 274 SAD-KIERLGIEKSLKSLENCDIVLGVFDLSKPLEQEDFNLIDTLNRAKKPCIVVLNKND 332 >gi|114332120|ref|YP_748342.1| tRNA modification GTPase TrmE [Nitrosomonas eutropha C91] gi|114309134|gb|ABI60377.1| tRNA modification GTPase trmE [Nitrosomonas eutropha C91] Length = 459 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 42/118 (35%), Positives = 71/118 (60%), Gaps = 2/118 (1%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + + G PNVGKS+L NRL ++A+V PG TRD + I G+ +++DTAG+ + Sbjct: 226 VVLTGQPNVGKSSLLNRLAGDEIAIVTEIPGTTRDTIRQSIEIEGIPLHLIDTAGLRETS 285 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + + + + AI +A L+L L+D + G+T DH++ + L K +P++ V NK+D Sbjct: 286 DI-VEQHGIARAYAAIEQADLVLLLVDGRYGVTKEDHSVLARL-PKELPVLTVHNKID 341 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 53/224 (23%), Positives = 105/224 (46%), Gaps = 25/224 (11%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + +++ + G+PNVGKS+L+NRL G + G TRD++ S + P+ + DTA Sbjct: 220 LQEGIKVVLTGQPNVGKSSLLNRLAGDEIAIVTEIPGTTRDTIRQSIEIEGIPLHLIDTA 279 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R+ S I +EQ + ++ ++ + ++L+D K+D ++ + V+ Sbjct: 280 GLRETSDI---VEQHGIARAYAAIEQADLVLLLVDGRYGVTKEDHSVL-ARLPKELPVLT 335 Query: 320 ALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWK 379 NK D+ + +D AI +S ++GEG+ +L+ +VL W+ Sbjct: 336 VHNKIDLSGQLSRIEEDTSGTAIY------------LSVKSGEGI-ELLRTVLLKTVGWQ 382 Query: 380 TRITTS--------YLNSWLQKTQLQNPPPTIFNRYNRLKYITQ 415 T I +L + L +L T + ++L+ + + Sbjct: 383 TNIAGEGAYMARQRHLQALLHAKELLKRAETWLHTADQLEILAE 426 >gi|260434789|ref|ZP_05788759.1| tRNA modification GTPase TrmE [Synechococcus sp. WH 8109] gi|260412663|gb|EEX05959.1| tRNA modification GTPase TrmE [Synechococcus sp. WH 8109] Length = 450 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 45/118 (38%), Positives = 74/118 (62%), Gaps = 2/118 (1%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKS+L NRL +++ A+V + PG TRD L + + GV ++DTAGI Sbjct: 224 VALVGRPNVGKSSLLNRLSRRERAIVTDLPGTTRDLLESEIALEGVPITLLDTAGIRSTD 283 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + ++ + ++E A+ A ++L ++D AG T D A+ + + + IP I+V+NK D Sbjct: 284 D-AVERLGIARSEEALATADVVLLVLDGHAGWTSEDAALLARI-PEQIPRILVANKAD 339 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 54/211 (25%), Positives = 102/211 (48%), Gaps = 22/211 (10%) Query: 163 FKQKYPNHPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINR 222 F++ P E ++ + + + +G+ + K LR+A+VGRPNVGKS+L+NR Sbjct: 182 FEEDLPPLDGEALQQQLQAVRLELQQLVRDGERG-DALRKGLRVALVGRPNVGKSSLLNR 240 Query: 223 LLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQS 282 L R + G TRD + + PI + DTAG+R +++E+ + +S ++ Sbjct: 241 LSRRERAIVTDLPGTTRDLLESEIALEGVPITLLDTAGIRSTD---DAVERLGIARSEEA 297 Query: 283 VRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAI 342 + T + +++LD + +D ++ + +++A NK D+ + Sbjct: 298 LATADVVLLVLDGHAGWTSEDAALLARIPEQIPRILVA-NKADLPA-------------- 342 Query: 343 KNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 PQ D+ ++ + G TGE DL+ +LE Sbjct: 343 GTFPQPVDVQLSALEG-TGEA--DLVQVLLE 370 >gi|118444248|ref|YP_876979.1| tRNA modification GTPase TrmE [Clostridium novyi NT] gi|166200476|sp|A0PX77|MNME_CLONN RecName: Full=tRNA modification GTPase mnmE gi|118134704|gb|ABK61748.1| tRNA modification GTPase TrmE [Clostridium novyi NT] Length = 459 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 60/178 (33%), Positives = 95/178 (53%), Gaps = 8/178 (4%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PNVGKS+L N L+ + A+V + PG TRD + I+G+ I+DTAGI D + Sbjct: 228 IVGKPNVGKSSLLNALLMETRAIVTDVPGTTRDVIEEYMSIDGIPIKIIDTAGIRDTDDV 287 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD--TR 124 + K +++ IN + L + ++D+ G+ D I +F++ K I++ NKMD ++ Sbjct: 288 -VEKIGVEKSREKINNSDLTVLVLDNSRGLDDEDKEIINFIKDK--KYIVLLNKMDLESK 344 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 I + E+ S K I+EISA+ G + VI ++F MI N + E Sbjct: 345 IDKEALKELNS---KYIIEISAKTGSGLDKFKEVIKELFFSGKVASKDVMITNTRHKE 399 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 65/205 (31%), Positives = 103/205 (50%), Gaps = 23/205 (11%) Query: 167 YPNHPLEMIENNKRNEESPK--ENITS--EGKSSVKNISKPLRIAVVGRPNVGKSTLINR 222 YP LE + + K E K + I S + K + + L +VG+PNVGKS+L+N Sbjct: 183 YPEDDLEEVTSEKGRESVSKLLDEIDSLLDHADEGKILREGLNTVIVGKPNVGKSSLLNA 242 Query: 223 LLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQS 282 LL R + G TRD + + PI+I DTAG+R + E + V+KS + Sbjct: 243 LLMETRAIVTDVPGTTRDVIEEYMSIDGIPIKIIDTAGIRDTDDVVEKI---GVEKSREK 299 Query: 283 VRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVS--DKLNLLQDLRTK 340 + + T+++LD + + +D I++ + + + V+ LNK D+ S DK L++L +K Sbjct: 300 INNSDLTVLVLDNSRGLDDEDKEIINFIKDKKYIVL--LNKMDLESKIDK-EALKELNSK 356 Query: 341 AIKNLPQIGDIYINTISGRTGEGLD 365 YI IS +TG GLD Sbjct: 357 -----------YIIEISAKTGSGLD 370 >gi|28209869|ref|NP_780813.1| tRNA modification GTPase TrmE [Clostridium tetani E88] gi|32171803|sp|Q899S2|MNME_CLOTE RecName: Full=tRNA modification GTPase mnmE gi|28202304|gb|AAO34750.1| thiophene and furan oxidation protein thdF [Clostridium tetani E88] Length = 459 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 50/159 (31%), Positives = 90/159 (56%), Gaps = 4/159 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + IVG PNVGKS+L N L+ +K A+V PG TRD + ++G+ I+DTAGI + + Sbjct: 226 VVIVGKPNVGKSSLLNALLSEKRAIVTEIPGTTRDVIEEYINLDGIPIKIIDTAGIRETE 285 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + K ++++ INEA L++ ++DS + D+ I +++ K ++ + ++++ Sbjct: 286 DL-VEKIGVERSKEKINEADLVILVLDSSNKLNDEDYEIIEYIKDKKYITLLNKSDLESK 344 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 I N ++ L I+EISA+ G +L I +F Sbjct: 345 I---NKSDLEDLKLYNIIEISAKMGFGLEDLKEYIKDLF 380 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 63/209 (30%), Positives = 105/209 (50%), Gaps = 27/209 (12%) Query: 167 YPNHPLEMIENNKRNEESPK--------ENITSEGKSSVKNISKPLRIAVVGRPNVGKST 218 YP LE I +++ E+ K + + EGK I + L + +VG+PNVGKS+ Sbjct: 183 YPEEDLEEITSSQVQEKIEKIIEELERLLDTSEEGKI----IREGLDVVIVGKPNVGKSS 238 Query: 219 LINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKK 278 L+N LL R + G TRD + N PI+I DTAG+R+ + E + V++ Sbjct: 239 LLNALLSEKRAIVTEIPGTTRDVIEEYINLDGIPIKIIDTAGIRETEDLVEKI---GVER 295 Query: 279 SMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLR 338 S + + + I++LD++ +D I++ + + + + LNK D+ S K+N DL Sbjct: 296 SKEKINEADLVILVLDSSNKLNDEDYEIIEYIKDKKY--ITLLNKSDLES-KIN-KSDLE 351 Query: 339 TKAIKNLPQIGDIYINTISGRTGEGLDDL 367 + N+ + IS + G GL+DL Sbjct: 352 DLKLYNIIE--------ISAKMGFGLEDL 372 >gi|329121358|ref|ZP_08249984.1| GTP-binding protein Era [Dialister micraerophilus DSM 19965] gi|327469767|gb|EGF15233.1| GTP-binding protein Era [Dialister micraerophilus DSM 19965] Length = 307 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 59/173 (34%), Positives = 89/173 (51%), Gaps = 19/173 (10%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP- 264 IA+VGRPNVGKSTL+N +LG + + + TR+ ++ WN +N I DT GM KP Sbjct: 18 IALVGRPNVGKSTLLNTVLGEKISIVSAHAQTTRNKITGVWNGENSQIVFLDTPGMHKPK 77 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 S++ E + Q TV ++ + ++L P D ++ + N VVL LNK Sbjct: 78 SKLGEVIRQSTV----DAIGEVDIVVMLCACDDPPGAGDRYLLSLLENKKTPVVLVLNKI 133 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIY----INTISGRTGEGLDDLMVSVLE 373 D+VS+ +K + Q +Y I +S +TG +D+LM VLE Sbjct: 134 DLVSE---------VAILKKIKQYSQMYNFKEIIPVSAQTGRNMDELM-QVLE 176 Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 57/180 (31%), Positives = 93/180 (51%), Gaps = 9/180 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIV--DTAGIAD 62 IA+VG PNVGKSTL N ++ +K+++V H TR+++ G + NG IV DT G+ Sbjct: 18 IALVGRPNVGKSTLLNTVLGEKISIVSAHAQTTRNKITG--VWNGENSQIVFLDTPGMHK 75 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 K+ + + + T AI E +++ L D + S L K P+++V NK+D Sbjct: 76 PKS-KLGEVIRQSTVDAIGEVDIVVMLCACDDPPGAGDRYLLSLLENKKTPVVLVLNKID 134 Query: 123 --TRIAQRNFYEIYS--LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 + +A + YS +FKEI+ +SA+ EL V+ K+ + P +MI + Sbjct: 135 LVSEVAILKKIKQYSQMYNFKEIIPVSAQTGRNMDELMQVLEKMLPEGPKYFPDDMITDQ 194 >gi|329565809|gb|AEB92241.1| tRNA modification GTPase [Thermoanaerobacter thermohydrosulfuricus] Length = 404 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 60/180 (33%), Positives = 95/180 (52%), Gaps = 8/180 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+K+ A+V + PG TRD + + G+ ++DTAGI D Sbjct: 191 AIIGKPNVGKSSLLNALLKENRAIVTDIPGTTRDIIEEYVNVKGIPIKLIDTAGIRDTDE 250 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD--T 123 + K +++ + EA LILF++D+ +T D+ I L KN I+ V NK+D Sbjct: 251 L-VEKIGVAKSKEVLAEADLILFVLDASRELTKEDYEIFDILVGKN--IVFVLNKIDLPK 307 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK-IFKQKYPNHPLEMIENNKRNE 182 +I ++ + I+E+S +G EL I+ +FK E+I N++ E Sbjct: 308 KIDEKELKNLTKDGI--IIEVSTVEKIGLQELEDTIYNLVFKGNINVKEDEIITNSRHKE 365 Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 52/150 (34%), Positives = 79/150 (52%), Gaps = 12/150 (8%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 I + L+ A++G+PNVGKS+L+N LL NR + G TRD + N K PI++ DTA Sbjct: 184 IREGLKTAIIGKPNVGKSSLLNALLKENRAIVTDIPGTTRDIIEEYVNVKGIPIKLIDTA 243 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R + E + V KS + + + + +LDA+ K+D I D + G +V Sbjct: 244 GIRDTDELVEKI---GVAKSKEVLAEADLILFVLDASRELTKEDYEIFDIL--VGKNIVF 298 Query: 320 ALNKWDMVSDKLNLLQDLRTKAIKNLPQIG 349 LNK D L + + K +KNL + G Sbjct: 299 VLNKID-------LPKKIDEKELKNLTKDG 321 >gi|261838727|gb|ACX98493.1| thiophene/furan oxidation protein [Helicobacter pylori 51] Length = 461 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 72/122 (59%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +++VG+PN GKS+L+N +L R L G TRD++ + H + + DTAG+R+ + Sbjct: 227 LSIVGKPNAGKSSLLNAMLLEERALVSDIKGTTRDTIEEVIELQGHKVRLIDTAGIRESA 286 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + +E+ ++KS++S+ C+ + + D + P E++D ++D++ ++ LNK D Sbjct: 287 ---DKIERLGIEKSLKSLENCDIVLGVFDLSKPLEQEDFNLIDTLNRAKKPCIVVLNKND 343 Query: 326 MV 327 + Sbjct: 344 LA 345 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 33/120 (27%), Positives = 62/120 (51%), Gaps = 1/120 (0%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + ++IVG PN GKS+L N ++ ++ A+V + G TRD + + G ++DTAGI + Sbjct: 225 HALSIVGKPNAGKSSLLNAMLLEERALVSDIKGTTRDTIEEVIELQGHKVRLIDTAGIRE 284 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + I + +++ ++ ++L + D + D + L + P I+V NK D Sbjct: 285 SAD-KIERLGIEKSLKSLENCDIVLGVFDLSKPLEQEDFNLIDTLNRAKKPCIVVLNKND 343 >gi|329565807|gb|AEB92240.1| tRNA modification GTPase [Thermoanaerobacter thermohydrosulfuricus] gi|329565811|gb|AEB92242.1| tRNA modification GTPase [Thermoanaerobacter thermohydrosulfuricus] Length = 404 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 60/180 (33%), Positives = 95/180 (52%), Gaps = 8/180 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+K+ A+V + PG TRD + + G+ ++DTAGI D Sbjct: 191 AIIGKPNVGKSSLLNALLKENRAIVTDIPGTTRDIIEEYVNVKGIPIKLIDTAGIRDTDE 250 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD--T 123 + K +++ + EA LILF++D+ +T D+ I L KN I+ V NK+D Sbjct: 251 L-VEKIGVAKSKEVLAEADLILFVLDASRELTKEDYEIFDILVGKN--IVFVLNKIDLPK 307 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK-IFKQKYPNHPLEMIENNKRNE 182 +I ++ + I+E+S +G EL I+ +FK E+I N++ E Sbjct: 308 KIDEKELKNLTKDGI--IIEVSTVEKIGLQELEDTIYNLVFKGNINVKEDEIITNSRHKE 365 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 61/188 (32%), Positives = 94/188 (50%), Gaps = 18/188 (9%) Query: 167 YPNHPLEMIENNKRNEESPKENITSEGK-----SSVKNISKPLRIAVVGRPNVGKSTLIN 221 +P +E +E K E+ KE + K S + I + L+ A++G+PNVGKS+L+N Sbjct: 147 FPEDDVEELER-KEMLETAKEIVKDIDKLIVSSESGRVIREGLKTAIIGKPNVGKSSLLN 205 Query: 222 RLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQ 281 LL NR + G TRD + N K PI++ DTAG+R + E + V KS + Sbjct: 206 ALLKENRAIVTDIPGTTRDIIEEYVNVKGIPIKLIDTAGIRDTDELVEKI---GVAKSKE 262 Query: 282 SVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKA 341 + + + +LDA+ K+D I D + G +V LNK D L + + K Sbjct: 263 VLAEADLILFVLDASRELTKEDYEIFDIL--VGKNIVFVLNKID-------LPKKIDEKE 313 Query: 342 IKNLPQIG 349 +KNL + G Sbjct: 314 LKNLTKDG 321 >gi|329565797|gb|AEB92235.1| tRNA modification GTPase [Thermoanaerobacter thermohydrosulfuricus] Length = 404 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 60/180 (33%), Positives = 95/180 (52%), Gaps = 8/180 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+K+ A+V + PG TRD + + G+ ++DTAGI D Sbjct: 191 AIIGKPNVGKSSLLNALLKENRAIVTDIPGTTRDIIEEYVNVKGIPIKLIDTAGIRDTDE 250 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD--T 123 + K +++ + EA LILF++D+ +T D+ I L KN I+ V NK+D Sbjct: 251 L-VEKIGVAKSKEVLAEADLILFVLDASRELTKEDYEIFDILVGKN--IVFVLNKIDLPK 307 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK-IFKQKYPNHPLEMIENNKRNE 182 +I ++ + I+E+S +G EL I+ +FK E+I N++ E Sbjct: 308 KIDEKELKNLTKDGI--IIEVSTVEKIGLQELEDTIYNLVFKGNINVKEDEIITNSRHKE 365 Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 52/150 (34%), Positives = 79/150 (52%), Gaps = 12/150 (8%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 I + L+ A++G+PNVGKS+L+N LL NR + G TRD + N K PI++ DTA Sbjct: 184 IREGLKTAIIGKPNVGKSSLLNALLKENRAIVTDIPGTTRDIIEEYVNVKGIPIKLIDTA 243 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R + E + V KS + + + + +LDA+ K+D I D + G +V Sbjct: 244 GIRDTDELVEKI---GVAKSKEVLAEADLILFVLDASRELTKEDYEIFDIL--VGKNIVF 298 Query: 320 ALNKWDMVSDKLNLLQDLRTKAIKNLPQIG 349 LNK D L + + K +KNL + G Sbjct: 299 VLNKID-------LPKKIDEKELKNLTKDG 321 >gi|254519865|ref|ZP_05131921.1| GTP-binding protein Era [Clostridium sp. 7_2_43FAA] gi|226913614|gb|EEH98815.1| GTP-binding protein Era [Clostridium sp. 7_2_43FAA] Length = 296 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 60/179 (33%), Positives = 98/179 (54%), Gaps = 13/179 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIING----VIFNIVDTAGI 60 + IVG PNVGKSTL N ++ +K+++V N P TR+ + Q I+ G ++F VDT GI Sbjct: 7 VTIVGRPNVGKSTLLNHIMGEKLSIVSNKPQTTRNNI--QTILTGKDHQLVF--VDTPGI 62 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 K+ + + M + + +I E L+LFLI+ + I D I L+ + P+ +V NK Sbjct: 63 HKPKH-KLGEYMVNSAKDSIKEVDLVLFLINPEEEIGRGDKFIIETLKNQKAPVFLVVNK 121 Query: 121 MDTRIAQR--NFYEIYS--LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 +D +R ++YS L+FKEI+ ISA +L ++ + + +P +MI Sbjct: 122 IDEFTQERVAKTLQMYSSELEFKEIIPISALRGKNVDKLVELMIETMPEGPKYYPDDMI 180 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 46/182 (25%), Positives = 86/182 (47%), Gaps = 17/182 (9%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 + +VGRPNVGKSTL+N ++G + ++ TR+++ K+H + DT G+ KP Sbjct: 7 VTIVGRPNVGKSTLLNHIMGEKLSIVSNKPQTTRNNIQTILTGKDHQLVFVDTPGIHKPK 66 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + V + S++ + + L++ + D I++++ N V L +NK D Sbjct: 67 H---KLGEYMVNSAKDSIKEVDLVLFLINPEEEIGRGDKFIIETLKNQKAPVFLVVNKID 123 Query: 326 ------------MVSDKLNLLQDLRTKAI--KNLPQIGDIYINTISGRTGEGLDDLMVSV 371 M S +L + + A+ KN+ ++ ++ I T+ DD++ V Sbjct: 124 EFTQERVAKTLQMYSSELEFKEIIPISALRGKNVDKLVELMIETMPEGPKYYPDDMITDV 183 Query: 372 LE 373 E Sbjct: 184 QE 185 >gi|283954515|ref|ZP_06372034.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni 414] gi|283793919|gb|EFC32669.1| tRNA modification GTPase TrmE [Campylobacter jejuni subsp. jejuni 414] Length = 442 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 44/133 (33%), Positives = 76/133 (57%), Gaps = 3/133 (2%) Query: 196 SVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEI 255 S K + + +IA++G+PNVGKS+L+N LL Y R + +G TRD++ S+ H + I Sbjct: 207 SKKGLIEGFKIAIIGKPNVGKSSLLNALLSYERAIVSDIAGTTRDTIEESFKLGTHLLRI 266 Query: 256 FDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGH 315 DTAG+R+ +++EQ V S +S+ + + + DA+ +++D +I + N Sbjct: 267 IDTAGIRESK---DTIEQIGVALSKKSLEDADIILAVFDASRKEDEEDKKIFKLLENIDK 323 Query: 316 AVVLALNKWDMVS 328 + LNK D+ S Sbjct: 324 KIFWILNKTDLES 336 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 63/120 (52%), Gaps = 1/120 (0%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + IAI+G PNVGKS+L N L+ + A+V + G TRD + + + I+DTAGI + Sbjct: 215 FKIAIIGKPNVGKSSLLNALLSYERAIVSDIAGTTRDTIEESFKLGTHLLRIIDTAGIRE 274 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 K+ +I + ++ ++ +A +IL + D+ D I L + I + NK D Sbjct: 275 SKD-TIEQIGVALSKKSLEDADIILAVFDASRKEDEEDKKIFKLLENIDKKIFWILNKTD 333 >gi|187777372|ref|ZP_02993845.1| hypothetical protein CLOSPO_00928 [Clostridium sporogenes ATCC 15579] gi|187774300|gb|EDU38102.1| hypothetical protein CLOSPO_00928 [Clostridium sporogenes ATCC 15579] Length = 461 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 57/178 (32%), Positives = 98/178 (55%), Gaps = 3/178 (1%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PNVGKS+L N L+ + A+V PG TRD + I+G+ IVDTAGI + ++ Sbjct: 228 IVGKPNVGKSSLLNALINENKAIVTEIPGTTRDVIEEYINIDGIPIKIVDTAGIRETEDV 287 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 + K ++++ I EA L++F++D I D I +F++ K +++ + ++ + Sbjct: 288 -VEKIGVEKSKEKIAEADLVIFMLDLSRKIDEEDIEIMNFIKNKKYIVLLNKSDLNKDLN 346 Query: 127 QRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + N + I LD K I+ S +++ G +EL I +F E+I N R++E+ Sbjct: 347 EENHF-IKGLDSKYIIRTSVKNNSGLNELKECIKDLFFSGEIKSD-EIIVTNARHQEA 402 Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 51/168 (30%), Positives = 87/168 (51%), Gaps = 11/168 (6%) Query: 167 YPNHPLEMIENNKRNEESPK-----ENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLIN 221 YP LE I K + + +N+ S + K + + L +VG+PNVGKS+L+N Sbjct: 183 YPEDDLEEITGQKIKVDLKEIINKIDNLISASEEG-KILREGLNTVIVGKPNVGKSSLLN 241 Query: 222 RLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQ 281 L+ N+ + G TRD + N PI+I DTAG+R+ + E + V+KS + Sbjct: 242 ALINENKAIVTEIPGTTRDVIEEYINIDGIPIKIVDTAGIRETEDVVEKI---GVEKSKE 298 Query: 282 SVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSD 329 + + I +LD + +++D+ I++ + N + V+ LNK D+ D Sbjct: 299 KIAEADLVIFMLDLSRKIDEEDIEIMNFIKNKKYIVL--LNKSDLNKD 344 >gi|75908210|ref|YP_322506.1| tRNA modification GTPase TrmE [Anabaena variabilis ATCC 29413] gi|123758831|sp|Q3MBM5|MNME_ANAVT RecName: Full=tRNA modification GTPase mnmE gi|75701935|gb|ABA21611.1| tRNA modification GTPase trmE [Anabaena variabilis ATCC 29413] Length = 463 Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 89/164 (54%), Gaps = 11/164 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKS+L N + A+V + PG TRD + Q ++ G+ ++DTAGI + Sbjct: 228 VAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETS 287 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + K +++ A N A L+L ID+ G T D I + + K+ P+I+V NK+D Sbjct: 288 D-QVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEI--YEQVKHRPLILVMNKID-- 342 Query: 125 IAQRNFYEIYSLDF----KEIVEISAEHDLGTSELHSVIFKIFK 164 + + I SL++ +IV +A G L + I +I + Sbjct: 343 LVDKKL--ITSLEYPKNITQIVHTAAAQKQGIDALETAILEIVQ 384 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 56/178 (31%), Positives = 97/178 (54%), Gaps = 14/178 (7%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 L++A+VGRPNVGKS+L+N +R + G TRD V P+++ DTAG+R+ Sbjct: 226 LKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRE 285 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 S + +E+ V++S Q+ T + ++ +DA + D I + V + ++L +NK Sbjct: 286 TS---DQVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVKH--RPLILVMNK 340 Query: 324 WDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTR 381 D+V K L+ L KN+ QI ++T + + +G+D L ++LEI + K + Sbjct: 341 IDLVDKK--LITSLEYP--KNITQI----VHTAAAQK-QGIDALETAILEIVQTGKVK 389 >gi|289704989|ref|ZP_06501404.1| conserved domain protein [Micrococcus luteus SK58] gi|289558325|gb|EFD51601.1| conserved domain protein [Micrococcus luteus SK58] Length = 163 Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 48/155 (30%), Positives = 80/155 (51%), Gaps = 4/155 (2%) Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 +RI+ V ++G A+V+A NKWD V + L L + ++L + IS +TG Sbjct: 1 VRILQMVLDSGRALVIAFNKWDQVDEDRRL--QLAKEIDRDLAHVAWAPRVNISAKTGWH 58 Query: 364 LDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 D L+ ++ W TRI T LN++L + +P P + R+ + TQ+ S PP F Sbjct: 59 KDRLVPALDLALDSWDTRIPTGKLNAFLGELVAAHPHPLRGGKQPRILFATQVSSRPPKF 118 Query: 424 LIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRM 458 ++F T + Y+R+++ RLR F G P+ + Sbjct: 119 VLFTT--GFLDPGYRRFIVRRLRETFGFEGTPLEI 151 >gi|30248403|ref|NP_840473.1| tRNA modification GTPase TrmE [Nitrosomonas europaea ATCC 19718] gi|46577435|sp|Q82XA1|MNME_NITEU RecName: Full=tRNA modification GTPase mnmE gi|30138289|emb|CAD84297.1| GTP-binding protein (HSR1-related):tRNA modification GTPase TrmE [Nitrosomonas europaea ATCC 19718] Length = 451 Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 42/118 (35%), Positives = 74/118 (62%), Gaps = 2/118 (1%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + + G PNVGKS+L NRL ++A+V + PG TRD + I G+ +++DTAG+ + Sbjct: 218 VVLAGQPNVGKSSLLNRLAGDEVAIVTDIPGTTRDTVRQSIEIEGIPLHLIDTAGLRETS 277 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + + + +T AI +A L+L L+DS+ G+T D ++ + L ++ +P++ V NK+D Sbjct: 278 DI-VEQHGIARTYAAIEQADLVLLLVDSRHGVTEEDRSVLTRLPER-LPVLTVHNKID 333 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 55/224 (24%), Positives = 109/224 (48%), Gaps = 25/224 (11%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + +++ + G+PNVGKS+L+NRL G + G TRD+V S + P+ + DTA Sbjct: 212 LQEGIKVVLAGQPNVGKSSLLNRLAGDEVAIVTDIPGTTRDTVRQSIEIEGIPLHLIDTA 271 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R+ S I +EQ + ++ ++ + ++L+D+ ++D R V + V+ Sbjct: 272 GLRETSDI---VEQHGIARTYAAIEQADLVLLLVDSRHGVTEED-RSVLTRLPERLPVLT 327 Query: 320 ALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWK 379 NK D+ + Q R + + P IY++ I+ GEG++ L ++L+ W+ Sbjct: 328 VHNKIDLSA------QPPRLEENTSGPT---IYLSAIN---GEGIELLRAALLKTAG-WQ 374 Query: 380 TRITTS--------YLNSWLQKTQLQNPPPTIFNRYNRLKYITQ 415 I +L + +Q +L +R ++L+ + + Sbjct: 375 ANIAGEGAYMARQRHLQALIQAKELLERAAAWLHRADQLEILAE 418 >gi|326390368|ref|ZP_08211927.1| tRNA modification GTPase TrmE [Thermoanaerobacter ethanolicus JW 200] gi|325993645|gb|EGD52078.1| tRNA modification GTPase TrmE [Thermoanaerobacter ethanolicus JW 200] Length = 462 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 60/180 (33%), Positives = 95/180 (52%), Gaps = 8/180 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+K+ A+V + PG TRD + + G+ ++DTAGI D Sbjct: 228 AIIGKPNVGKSSLLNALLKENRAIVTDIPGTTRDIIEEYVNVKGIPIKLIDTAGIRDTDE 287 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD--T 123 + K +++ + EA LILF++D+ +T D+ I L KN I+ V NK+D Sbjct: 288 L-VEKIGVAKSKEVLAEADLILFVLDASRELTKEDYEIFDILVGKN--IVFVLNKIDLPK 344 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK-IFKQKYPNHPLEMIENNKRNE 182 +I ++ + I+E+S +G EL I+ +FK E+I N++ E Sbjct: 345 KIDEKELKNLTKDGI--IIEVSTVEKIGLQELEDTIYNLVFKGNINVKEDEIITNSRHKE 402 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 59/177 (33%), Positives = 89/177 (50%), Gaps = 14/177 (7%) Query: 173 EMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTG 232 EM+E K E + I S + I + L+ A++G+PNVGKS+L+N LL NR + Sbjct: 196 EMLETAKEIVEDIDKLIASSESGMI--IREGLKTAIIGKPNVGKSSLLNALLKENRAIVT 253 Query: 233 SQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVL 292 G TRD + N K PI++ DTAG+R + E + V KS + + + + + Sbjct: 254 DIPGTTRDIIEEYVNVKGIPIKLIDTAGIRDTDELVEKI---GVAKSKEVLAEADLILFV 310 Query: 293 LDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIG 349 LDA+ K+D I D + G +V LNK D L + + K +KNL + G Sbjct: 311 LDASRELTKEDYEIFDIL--VGKNIVFVLNKID-------LPKKIDEKELKNLTKDG 358 >gi|329565795|gb|AEB92234.1| tRNA modification GTPase [Thermoanaerobacter thermohydrosulfuricus] Length = 404 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 60/180 (33%), Positives = 95/180 (52%), Gaps = 8/180 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+K+ A+V + PG TRD + + G+ ++DTAGI D Sbjct: 191 AIIGKPNVGKSSLLNALLKENRAIVTDIPGTTRDIIEEYVNVKGIPIKLIDTAGIRDTDE 250 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD--T 123 + K +++ + EA LILF++D+ +T D+ I L KNI + V NK+D Sbjct: 251 L-VEKIGVAKSKEVLAEADLILFVLDASRELTKEDYEIFDILVGKNI--VFVLNKIDLPK 307 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK-IFKQKYPNHPLEMIENNKRNE 182 +I ++ + I+E+S +G EL I+ +FK E+I N++ E Sbjct: 308 KIDEKELKNLTKDGI--IIEVSPVEKIGLQELEDTIYNLVFKGNINVKEDEIITNSRHKE 365 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 61/188 (32%), Positives = 94/188 (50%), Gaps = 18/188 (9%) Query: 167 YPNHPLEMIENNKRNEESPKENITSEGK-----SSVKNISKPLRIAVVGRPNVGKSTLIN 221 +P +E +E K E+ KE + K S + I + L+ A++G+PNVGKS+L+N Sbjct: 147 FPEDDVEELER-KEMLETAKEIVKDIDKLIVSSESGRVIREGLKTAIIGKPNVGKSSLLN 205 Query: 222 RLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQ 281 LL NR + G TRD + N K PI++ DTAG+R + E + V KS + Sbjct: 206 ALLKENRAIVTDIPGTTRDIIEEYVNVKGIPIKLIDTAGIRDTDELVEKI---GVAKSKE 262 Query: 282 SVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKA 341 + + + +LDA+ K+D I D + G +V LNK D L + + K Sbjct: 263 VLAEADLILFVLDASRELTKEDYEIFDIL--VGKNIVFVLNKID-------LPKKIDEKE 313 Query: 342 IKNLPQIG 349 +KNL + G Sbjct: 314 LKNLTKDG 321 >gi|323703263|ref|ZP_08114914.1| tRNA modification GTPase TrmE [Desulfotomaculum nigrificans DSM 574] gi|323531728|gb|EGB21616.1| tRNA modification GTPase TrmE [Desulfotomaculum nigrificans DSM 574] Length = 461 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 55/183 (30%), Positives = 100/183 (54%), Gaps = 12/183 (6%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 I+G PNVGKS+L N L+K++ A+V + PG TRD + I GV I+DTAG+ + + Sbjct: 227 IIGKPNVGKSSLLNALLKEQRAIVTDIPGTTRDIIEEFLNIQGVPLKIIDTAGLRETDDL 286 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPII-----IVSNKM 121 + K ++ IN+A L+L ++D+ GIT D I S ++ K ++ I +N++ Sbjct: 287 -VEKLGVARSRQLINQADLVLLVLDATTGITEDDLKIISLVKDKKTLVLINKIDIAANRI 345 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 ++ +R + ++L EISA+ ++G +L I ++ +I +N R+ Sbjct: 346 NSDKIKRYLGDSFTL------EISAKQEIGLDKLEQAILELVLAGKVTAADNVIISNTRH 399 Query: 182 EES 184 +++ Sbjct: 400 KQA 402 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 56/171 (32%), Positives = 94/171 (54%), Gaps = 13/171 (7%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 L+ ++G+PNVGKS+L+N LL R + G TRD + N + P++I DTAG+R+ Sbjct: 223 LQTVIIGKPNVGKSSLLNALLKEQRAIVTDIPGTTRDIIEEFLNIQGVPLKIIDTAGLRE 282 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 + E L V +S Q + + +++LDAT + DL+I+ S+ +VL +NK Sbjct: 283 TDDLVEKL---GVARSRQLINQADLVLLVLDATTGITEDDLKII-SLVKDKKTLVL-INK 337 Query: 324 WDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEI 374 D+ ++++N + IK +GD + IS + GLD L ++LE+ Sbjct: 338 IDIAANRIN------SDKIKRY--LGDSFTLEISAKQEIGLDKLEQAILEL 380 >gi|255527592|ref|ZP_05394456.1| tRNA modification GTPase TrmE [Clostridium carboxidivorans P7] gi|296186790|ref|ZP_06855191.1| tRNA modification GTPase TrmE [Clostridium carboxidivorans P7] gi|255508725|gb|EET85101.1| tRNA modification GTPase TrmE [Clostridium carboxidivorans P7] gi|296048504|gb|EFG87937.1| tRNA modification GTPase TrmE [Clostridium carboxidivorans P7] Length = 459 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 61/187 (32%), Positives = 98/187 (52%), Gaps = 17/187 (9%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K I + L +VG+PNVGKS+L+N LL R + G TRD + N P++I D Sbjct: 218 KIIREGLNTVIVGKPNVGKSSLLNSLLREKRAIVTEIPGTTRDVIEEYINIDGVPVKIVD 277 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ + E + V+KS + + + I++LD + + +D I+D + + + Sbjct: 278 TAGIRETNDFVEKI---GVEKSKEKINEADLIILMLDLSRELDNEDREIIDYIKDKKY-- 332 Query: 318 VLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKL 377 ++ LNK D+ K+N + IKNL YI S +TGEGLD L + E+ Sbjct: 333 IILLNKSDL-GGKIN------KEDIKNLNS---NYIVETSAKTGEGLDKLRECIREL--F 380 Query: 378 WKTRITT 384 +K +T+ Sbjct: 381 FKGEVTS 387 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 56/157 (35%), Positives = 88/157 (56%), Gaps = 4/157 (2%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PNVGKS+L N L+++K A+V PG TRD + I+GV IVDTAGI + N Sbjct: 228 IVGKPNVGKSSLLNSLLREKRAIVTEIPGTTRDVIEEYINIDGVPVKIVDTAGIRE-TND 286 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 + K ++++ INEA LI+ ++D + D I +++ K I++ + + +I Sbjct: 287 FVEKIGVEKSKEKINEADLIILMLDLSRELDNEDREIIDYIKDKKYIILLNKSDLGGKI- 345 Query: 127 QRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 N +I +L+ IVE SA+ G +L I ++F Sbjct: 346 --NKEDIKNLNSNYIVETSAKTGEGLDKLRECIRELF 380 >gi|307243432|ref|ZP_07525588.1| tRNA modification GTPase TrmE [Peptostreptococcus stomatis DSM 17678] gi|306493156|gb|EFM65153.1| tRNA modification GTPase TrmE [Peptostreptococcus stomatis DSM 17678] Length = 459 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 54/170 (31%), Positives = 95/170 (55%), Gaps = 18/170 (10%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L+ A++G+PNVGKS+L+N +LG +R + G TRD + N K P++I D Sbjct: 216 KILREGLKTAILGKPNVGKSSLMNLILGEDRAIVTDIPGTTRDVIEEFVNIKGIPLKIVD 275 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R + E + V+KS + ++ + +V+LD++ P +++D++I++++ V Sbjct: 276 TAGIRATDDLVEKI---GVEKSREHMKLADLALVVLDSSRPLDQEDIQILENIDQAKSLV 332 Query: 318 VLALNKWDMVS--DKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLD 365 + LNK D+ D +L + TK I N IS G+G+D Sbjct: 333 I--LNKTDLACQMDIESLKSYVDTKNIIN-----------ISALKGQGID 369 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 54/179 (30%), Positives = 88/179 (49%), Gaps = 6/179 (3%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N ++ + A+V + PG TRD + I G+ IVDTAGI + Sbjct: 225 AILGKPNVGKSSLMNLILGEDRAIVTDIPGTTRDVIEEFVNIKGIPLKIVDTAGIRATDD 284 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 + K +++ + A L L ++DS + D I + + +I+ NK D Sbjct: 285 L-VEKIGVEKSREHMKLADLALVVLDSSRPLDQEDIQILENIDQAKSLVIL--NKTDLA- 340 Query: 126 AQRNFYEIYS-LDFKEIVEISAEHDLGTSELHSVIFK-IFKQKYPNHPLEMIENNKRNE 182 Q + + S +D K I+ ISA G +H + +F+ K + MI N++ + Sbjct: 341 CQMDIESLKSYVDTKNIINISALKGQGIDLIHDRMEDLVFEGKISDSSDLMITNSRHRD 399 >gi|94502128|ref|ZP_01308629.1| GTP-binding protein Era [Oceanobacter sp. RED65] gi|94425730|gb|EAT10737.1| GTP-binding protein Era [Oceanobacter sp. RED65] Length = 299 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 54/170 (31%), Positives = 87/170 (51%), Gaps = 21/170 (12%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG- 63 IAIVG PNVGKSTL N ++ +K+++ P TR ++ G V VDT G+ +G Sbjct: 9 IAIVGRPNVGKSTLLNNILGQKLSITSRKPQTTRHQILGMKTTANVQAIYVDTPGLHEGY 68 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD- 122 ++ + +N AIN+ L++FLID + P D ++ ++ +P I+V NK+D Sbjct: 69 SEKALNRYINKVATTAINDVDLVVFLID-RTKWMPEDQSVLEKIQASKVPCILVINKLDH 127 Query: 123 -----------TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 ++QR+ DFKE+ ISA+ +EL + I + Sbjct: 128 LADKQSLLPYLEEVSQRH-------DFKEVFPISAKTGYNVAELEAAIAR 170 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 37/129 (28%), Positives = 66/129 (51%), Gaps = 2/129 (1%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA+VGRPNVGKSTL+N +LG +T + TR + N DT G+ + Sbjct: 9 IAIVGRPNVGKSTLLNNILGQKLSITSRKPQTTRHQILGMKTTANVQAIYVDTPGLHEGY 68 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 ++L + K + ++ + + L+D T + +D +++ + + +L +NK D Sbjct: 69 S-EKALNRYINKVATTAINDVDLVVFLIDRT-KWMPEDQSVLEKIQASKVPCILVINKLD 126 Query: 326 MVSDKLNLL 334 ++DK +LL Sbjct: 127 HLADKQSLL 135 >gi|329565801|gb|AEB92237.1| tRNA modification GTPase [Thermoanaerobacter thermohydrosulfuricus] Length = 404 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 60/180 (33%), Positives = 95/180 (52%), Gaps = 8/180 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+K+ A+V + PG TRD + + G+ ++DTAGI D Sbjct: 191 AIIGKPNVGKSSLLNALLKENRAIVTDIPGTTRDIIEEYVNVKGIPIKLIDTAGIRDTDE 250 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD--T 123 + K +++ + EA LILF++D+ +T D+ I L KNI + V NK+D Sbjct: 251 L-VEKIGVAKSKEVLAEADLILFVLDASRELTKEDYEIFDILVGKNI--VFVLNKIDLPK 307 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK-IFKQKYPNHPLEMIENNKRNE 182 +I ++ + I+E+S +G EL I+ +FK E+I N++ E Sbjct: 308 KIDEKELKNLTKDGI--IIEVSPVEKIGLQELEDTIYNLVFKGNINVKEDEIITNSRHKE 365 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 61/188 (32%), Positives = 94/188 (50%), Gaps = 18/188 (9%) Query: 167 YPNHPLEMIENNKRNEESPKENITSEGK-----SSVKNISKPLRIAVVGRPNVGKSTLIN 221 +P +E +E K E+ KE + K S + I + L+ A++G+PNVGKS+L+N Sbjct: 147 FPEDDVEELER-KEMLETAKEIVKDIDKLIVSSESGRVIREGLKTAIIGKPNVGKSSLLN 205 Query: 222 RLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQ 281 LL NR + G TRD + N K PI++ DTAG+R + E + V KS + Sbjct: 206 ALLKENRAIVTDIPGTTRDIIEEYVNVKGIPIKLIDTAGIRDTDELVEKI---GVAKSKE 262 Query: 282 SVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKA 341 + + + +LDA+ K+D I D + G +V LNK D L + + K Sbjct: 263 VLAEADLILFVLDASRELTKEDYEIFDIL--VGKNIVFVLNKID-------LPKKIDEKE 313 Query: 342 IKNLPQIG 349 +KNL + G Sbjct: 314 LKNLTKDG 321 >gi|303240051|ref|ZP_07326572.1| tRNA modification GTPase TrmE [Acetivibrio cellulolyticus CD2] gi|302592320|gb|EFL62047.1| tRNA modification GTPase TrmE [Acetivibrio cellulolyticus CD2] Length = 460 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 55/167 (32%), Positives = 89/167 (53%), Gaps = 9/167 (5%) Query: 167 YPNHPLEMIENNKRNEE--SPKENITS--EGKSSVKNISKPLRIAVVGRPNVGKSTLINR 222 YP H +E I K E KE ++S EG + I + + +VGRPNVGKS+L+N Sbjct: 182 YPEHDIEEITGQKIYTEIKDIKEKLSSIIEGFEKGRIIREGINAVIVGRPNVGKSSLLNE 241 Query: 223 LLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQS 282 L G +R + G TRD + N P+ I DTAG+R+ + E + V+K+ + Sbjct: 242 LTGKSRAIVTDIPGTTRDIIEDYINLNGVPVRIIDTAGIRETEDVVEKI---GVEKTHKE 298 Query: 283 VRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSD 329 V + + I+++DA ++D+ I++ + ++ LNK DMVS+ Sbjct: 299 VDSADLIIMMIDADQGVNQEDIDILNKIKEK--KAIIILNKIDMVSE 343 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 54/158 (34%), Positives = 94/158 (59%), Gaps = 5/158 (3%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PNVGKS+L N L K A+V + PG TRD + +NGV I+DTAGI + ++ Sbjct: 227 IVGRPNVGKSSLLNELTGKSRAIVTDIPGTTRDIIEDYINLNGVPVRIIDTAGIRETEDV 286 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 + K ++T ++ A LI+ +ID+ G+ D I + +++K II+ NK+D ++ Sbjct: 287 -VEKIGVEKTHKEVDSADLIIMMIDADQGVNQEDIDILNKIKEKKAIIIL--NKIDM-VS 342 Query: 127 QRNFYEIYS-LDFKEIVEISAEHDLGTSELHSVIFKIF 163 + +I + L K ++ +S + D+GT++L + + ++F Sbjct: 343 EDKILDIENKLGNKNVIRMSLKEDVGTADLGNAVVELF 380 >gi|330446942|ref|ZP_08310593.1| GTP-binding protein Era [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491133|dbj|GAA05090.1| GTP-binding protein Era [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 301 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 51/149 (34%), Positives = 82/149 (55%), Gaps = 6/149 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL NRLV +K+++ P TR R+ G +G VDT G+ + Sbjct: 10 IAIVGRPNVGKSTLLNRLVGQKLSITSRKPQTTRHRIMGVDTRDGYQAVYVDTPGLHIEE 69 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN ++ + L+LFL+D T D + + L K +P +++ NK+D Sbjct: 70 KRTINRLMNRAASSSLTDVELVLFLVDGTMW-TDDDEMVLNKLAKSQLPTVLLVNKVDNV 128 Query: 125 IAQRNFY----EIYS-LDFKEIVEISAEH 148 + + E+ S ++F ++V +SA+H Sbjct: 129 KDKHELFPHLQELASKMEFVDVVPVSAKH 157 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 45/139 (32%), Positives = 68/139 (48%), Gaps = 8/139 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMR-KP 264 IA+VGRPNVGKSTL+NRL+G +T + TR + + DT G+ + Sbjct: 10 IAIVGRPNVGKSTLLNRLVGQKLSITSRKPQTTRHRIMGVDTRDGYQAVYVDTPGLHIEE 69 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 R L + S+ V E + L+D T+ + D +++ + + VL +NK Sbjct: 70 KRTINRLMNRAASSSLTDV---ELVLFLVDGTM-WTDDDEMVLNKLAKSQLPTVLLVNKV 125 Query: 325 DMVSDKLNL---LQDLRTK 340 D V DK L LQ+L +K Sbjct: 126 DNVKDKHELFPHLQELASK 144 >gi|158334891|ref|YP_001516063.1| tRNA modification GTPase TrmE [Acaryochloris marina MBIC11017] gi|205829048|sp|B0CBB0|MNME_ACAM1 RecName: Full=tRNA modification GTPase mnmE gi|158305132|gb|ABW26749.1| tRNA modification GTPase TrmE [Acaryochloris marina MBIC11017] Length = 455 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 49/161 (30%), Positives = 87/161 (54%), Gaps = 6/161 (3%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AI+G PNVGKS+L N + A+V + PG TRD + Q ++ G+ ++DTAGI + Sbjct: 222 TVAIIGRPNVGKSSLLNAWCRCDRAIVTDLPGTTRDVVESQLVVGGIPIQVLDTAGIRET 281 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 ++ + + ++ A A L+L ID+ G T D + + +++P+I++ NK+D Sbjct: 282 ED-QVEQIGVTRSHQAAQSADLVLLTIDASVGWTSDDQQL--YQAFQDLPLILIVNKVDL 338 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFK 164 + Q +Y ++V A + G SEL + I + + Sbjct: 339 -VPQEQV--VYPEAIAQVVSTIAAQNQGISELETAILETVQ 376 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 47/170 (27%), Positives = 92/170 (54%), Gaps = 17/170 (10%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 L +A++GRPNVGKS+L+N +R + G TRD V PI++ DTAG+R+ Sbjct: 221 LTVAIIGRPNVGKSSLLNAWCRCDRAIVTDLPGTTRDVVESQLVVGGIPIQVLDTAGIRE 280 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 + +EQ V +S Q+ ++ + ++ +DA++ + D ++ + + ++L +NK Sbjct: 281 TE---DQVEQIGVTRSHQAAQSADLVLLTIDASVGWTSDDQQLYQAFQDL--PLILIVNK 335 Query: 324 WDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 D+V + Q + +AI + ++TI+ + +G+ +L ++LE Sbjct: 336 VDLVPQE----QVVYPEAIAQV-------VSTIAAQN-QGISELETAILE 373 >gi|224372875|ref|YP_002607247.1| tRNA modification GTPase TrmE [Nautilia profundicola AmH] gi|223589292|gb|ACM93028.1| tRNA modification GTPase TrmE [Nautilia profundicola AmH] Length = 442 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 56/205 (27%), Positives = 107/205 (52%), Gaps = 25/205 (12%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP 264 +IA+VG+PNVGKS+++N LL R + +G TRD++ +H I I DTAG+R Sbjct: 214 KIAIVGKPNVGKSSILNALLNKQRAIVSDIAGTTRDTIEEDIQIGSHLIRIIDTAGIRAA 273 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 + +E+ V++S ++++ + + + DAT F +D +I++ + +G ++ +NK Sbjct: 274 K---DEIEKIGVERSKEAIKEADIVLAVFDAT-EFTDEDEQILNIIKESGKDTIIVINKI 329 Query: 325 DMVSD------------KLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVL 372 D D K++ +D+ T ++ L +I D Y +GE + +++S Sbjct: 330 DKGIDSDISKFENMPVVKISAKEDI-TPLVEKLKEILDSY-------SGED-EHVLISAR 380 Query: 373 EINKLWKTRITTSYLNSWLQKTQLQ 397 +IN + K + +LQ +L+ Sbjct: 381 QINAVEKALKSIEESKEFLQTGELE 405 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 53/148 (35%), Positives = 82/148 (55%), Gaps = 6/148 (4%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 Y IAIVG PNVGKS++ N L+ K+ A+V + G TRD + I + I+DTAGI Sbjct: 213 YKIAIVGKPNVGKSSILNALLNKQRAIVSDIAGTTRDTIEEDIQIGSHLIRIIDTAGIRA 272 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 K+ I K ++++ AI EA ++L + D+ T D I + +++ IIV NK+D Sbjct: 273 AKD-EIEKIGVERSKEAIKEADIVLAVFDATE-FTDEDEQILNIIKESGKDTIIVINKID 330 Query: 123 TRIAQRNFYEIYSLDFKEIVEISAEHDL 150 I +I + +V+ISA+ D+ Sbjct: 331 KGIDS----DISKFENMPVVKISAKEDI 354 >gi|153937917|ref|YP_001392999.1| tRNA modification GTPase TrmE [Clostridium botulinum F str. Langeland] gi|166200475|sp|A7GJN9|MNME_CLOBL RecName: Full=tRNA modification GTPase mnmE gi|152933813|gb|ABS39311.1| tRNA modification GTPase TrmE [Clostridium botulinum F str. Langeland] Length = 461 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 57/159 (35%), Positives = 91/159 (57%), Gaps = 6/159 (3%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PNVGKS+L N L+ + A+V PG TRD + I+G+ IVDTAGI + ++ Sbjct: 228 IVGKPNVGKSSLLNALINENKAIVTEIPGTTRDVIEEYINIDGIPTKIVDTAGIRETEDV 287 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD--TR 124 + K ++++ I+EA L++F++D I D I F+ KN I++ NK+D Sbjct: 288 -VEKIGVEKSKEKIDEADLVIFMLDLSKKIDEEDIEIMDFI--KNKKYIVLLNKLDLNKD 344 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 + + N + I LD K I++ S +++ G +EL I +F Sbjct: 345 LNEENHF-IKELDSKYIIKTSVKNNSGLNELKECIKNLF 382 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 51/168 (30%), Positives = 86/168 (51%), Gaps = 11/168 (6%) Query: 167 YPNHPLEMIENNKRNEESPK-----ENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLIN 221 YP LE I K + + +N+ S + K + + L +VG+PNVGKS+L+N Sbjct: 183 YPEDDLEEITGQKIKVDLKEIINKIDNLISASEEG-KILREGLNTVIVGKPNVGKSSLLN 241 Query: 222 RLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQ 281 L+ N+ + G TRD + N P +I DTAG+R+ + E + V+KS + Sbjct: 242 ALINENKAIVTEIPGTTRDVIEEYINIDGIPTKIVDTAGIRETEDVVEKI---GVEKSKE 298 Query: 282 SVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSD 329 + + I +LD + +++D+ I+D + N + V+ LNK D+ D Sbjct: 299 KIDEADLVIFMLDLSKKIDEEDIEIMDFIKNKKYIVL--LNKLDLNKD 344 >gi|116072006|ref|ZP_01469274.1| tRNA modification GTPase [Synechococcus sp. BL107] gi|116065629|gb|EAU71387.1| tRNA modification GTPase [Synechococcus sp. BL107] Length = 451 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 44/118 (37%), Positives = 73/118 (61%), Gaps = 2/118 (1%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKS+L NRL +++ A+V PG TRD L + +++GV ++DTAGI Sbjct: 225 VALVGRPNVGKSSLLNRLSRRERAIVTELPGTTRDLLESEIVLDGVPITLMDTAGIR-AT 283 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 N ++ + ++E A+ A L+L ++D AG T D + + + +P ++V+NK D Sbjct: 284 NDAVEQLGIARSEEALMSADLVLLIVDGHAGWTETDAQLLARI-PNAVPRVVVANKSD 340 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 51/172 (29%), Positives = 89/172 (51%), Gaps = 8/172 (4%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 LR+A+VGRPNVGKS+L+NRL R + G TRD + PI + DTAG+R Sbjct: 223 LRVALVGRPNVGKSSLLNRLSRRERAIVTELPGTTRDLLESEIVLDGVPITLMDTAGIRA 282 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 + +++EQ + +S +++ + + ++++D + + D +++ + N VV+A NK Sbjct: 283 TN---DAVEQLGIARSEEALMSADLVLLIVDGHAGWTETDAQLLARIPNAVPRVVVA-NK 338 Query: 324 WDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEIN 375 D+ L D++ A+ + D + + R G G D VL +N Sbjct: 339 SDLDGPPLPREVDVQFSALNGAGE--DALVQVLLERCGAG--DAAAIVLSLN 386 >gi|157364263|ref|YP_001471030.1| tRNA modification GTPase TrmE [Thermotoga lettingae TMO] gi|205829181|sp|A8F732|MNME_THELT RecName: Full=tRNA modification GTPase mnmE gi|157314867|gb|ABV33966.1| tRNA modification GTPase TrmE [Thermotoga lettingae TMO] Length = 450 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 47/119 (39%), Positives = 73/119 (61%), Gaps = 3/119 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + I+G PNVGKSTL N LVK++ A+V + PG TRD + +ING+ F ++DTAGI Sbjct: 216 VVIIGKPNVGKSTLLNTLVKEERAIVTDIPGTTRDLIEVPLMINGISFTLIDTAGIRHSH 275 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + + K ++ A +E +LILF++D+ + D I S +++K I+V NK+D Sbjct: 276 D-EVEKIGVERAIKAADEGNLILFVLDATTPVDENDKKILSLIKEKK--YIVVINKIDA 331 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 36/126 (28%), Positives = 68/126 (53%), Gaps = 5/126 (3%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 +S +++ ++G+PNVGKSTL+N L+ R + G TRD + + + DTA Sbjct: 210 LSSGIKVVIIGKPNVGKSTLLNTLVKEERAIVTDIPGTTRDLIEVPLMINGISFTLIDTA 269 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R + +E+ V++++++ + +LDAT P ++ D +I+ + + VV Sbjct: 270 GIRHSH---DEVEKIGVERAIKAADEGNLILFVLDATTPVDENDKKILSLIKEKKYIVV- 325 Query: 320 ALNKWD 325 +NK D Sbjct: 326 -INKID 330 >gi|167759231|ref|ZP_02431358.1| hypothetical protein CLOSCI_01578 [Clostridium scindens ATCC 35704] gi|167663105|gb|EDS07235.1| hypothetical protein CLOSCI_01578 [Clostridium scindens ATCC 35704] Length = 298 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 56/167 (33%), Positives = 91/167 (54%), Gaps = 17/167 (10%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAII----NGVIFNIVDTAGI 60 + ++G PNVGKSTL N L+ +K+A+ N P TR+R+ Q ++ ++F VDT GI Sbjct: 10 VTLIGRPNVGKSTLMNYLIGQKIAITSNKPQTTRNRI--QTVLTTEEGQIVF--VDTPGI 65 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 KN + + M + E +NE ++L+L++ I + I L+K + P+I+V NK Sbjct: 66 HKAKN-KLGEYMVNVAERTLNEVDVVLWLVEPTTFIGAGEKHIAEQLKKVSTPVILVINK 124 Query: 121 MDTRIAQR------NFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 +D+ + + +IY DF EIV +SA + T EL + K Sbjct: 125 IDSVKKEEILPAIATYKDIY--DFAEIVPVSARNGNNTEELLKAVMK 169 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 45/175 (25%), Positives = 79/175 (45%), Gaps = 22/175 (12%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 + ++GRPNVGKSTL+N L+G +T ++ TR+ + + I DT G+ K Sbjct: 10 VTLIGRPNVGKSTLMNYLIGQKIAITSNKPQTTRNRIQTVLTTEEGQIVFVDTPGIHKAK 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + V + +++ + + L++ T + I + + V+L +NK D Sbjct: 70 N---KLGEYMVNVAERTLNEVDVVLWLVEPTTFIGAGEKHIAEQLKKVSTPVILVINKID 126 Query: 326 MVSDKLNLLQDLRTKAIKNLPQIG---DIY----INTISGRTGEGLDDLMVSVLE 373 V K + LP I DIY I +S R G ++L+ +V++ Sbjct: 127 SV------------KKEEILPAIATYKDIYDFAEIVPVSARNGNNTEELLKAVMK 169 >gi|94266686|ref|ZP_01290361.1| tRNA modification GTPase TrmE:Small GTP-binding protein domain:GTP-binding [delta proteobacterium MLMS-1] gi|93452674|gb|EAT03231.1| tRNA modification GTPase TrmE:Small GTP-binding protein domain:GTP-binding [delta proteobacterium MLMS-1] Length = 500 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 66/223 (29%), Positives = 109/223 (48%), Gaps = 41/223 (18%) Query: 171 PLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLL 230 PLE + + +R + I EG + +A++GRPNVGKS+L+N LL R + Sbjct: 215 PLEQLLSQRR-----RGRIYREGAA----------VAILGRPNVGKSSLLNALLREERAI 259 Query: 231 TGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTI 290 G TRD++ S P+ + DTAG+R ES+E+ +++S + R + + Sbjct: 260 VTPVPGTTRDTIEESIEVNGVPVRLIDTAGIRD---TPESVEEIGIERSRRHGREADLVL 316 Query: 291 VLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMV---------SDKLNLLQDLRTK- 340 +L+DAT +DL + S+ G +VL +NK D+ D + + R K Sbjct: 317 LLVDATSGLVPEDLTLYQSL--AGQNLVLVVNKLDLPGPDGQPPKKGDTIPIFHTRREKR 374 Query: 341 ---AIKN---LP-----QIGDIYINTISGRTGEGLDDLMVSVL 372 A+KN +P + D + IS RTG+GL++L ++ Sbjct: 375 ETPAMKNRYGVPLFWRQRFADQPLVGISARTGQGLEELTEAIF 417 Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 44/119 (36%), Positives = 72/119 (60%), Gaps = 3/119 (2%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 +AI+G PNVGKS+L N L++++ A+V PG TRD + +NGV ++DTAGI D Sbjct: 234 AVAILGRPNVGKSSLLNALLREERAIVTPVPGTTRDTIEESIEVNGVPVRLIDTAGIRDT 293 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 S+ + +++ EA L+L L+D+ +G+ P D + L +N +++V NK+D Sbjct: 294 PE-SVEEIGIERSRRHGREADLVLLLVDATSGLVPEDLTLYQSLAGQN--LVLVVNKLD 349 >gi|296273895|ref|YP_003656526.1| tRNA modification GTPase TrmE [Arcobacter nitrofigilis DSM 7299] gi|296098069|gb|ADG94019.1| tRNA modification GTPase TrmE [Arcobacter nitrofigilis DSM 7299] Length = 447 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 45/128 (35%), Positives = 78/128 (60%), Gaps = 8/128 (6%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 ++A++G+PNVGKS+L+N+LL ++R + +G TRD++ S H I+I DTAG+R+ Sbjct: 217 FKVAIIGKPNVGKSSLLNKLLNFDRAIISDIAGTTRDTIEESVKIGTHIIKIVDTAGIRE 276 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD---LRIVDSVFNTGHAVVLA 320 S +++E+ ++KS+ +V + I L D + + +D L I+D + N +V Sbjct: 277 AS---DTIERIGIEKSLSAVNEADIIISLFDNSKVCDDEDKKILNILDEIENKEKIIV-- 331 Query: 321 LNKWDMVS 328 LNK D+ S Sbjct: 332 LNKIDLES 339 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 44/121 (36%), Positives = 69/121 (57%), Gaps = 2/121 (1%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + +AI+G PNVGKS+L N+L+ A++ + G TRD + I I IVDTAGI + Sbjct: 217 FKVAIIGKPNVGKSSLLNKLLNFDRAIISDIAGTTRDTIEESVKIGTHIIKIVDTAGIRE 276 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRK-KNIPIIIVSNKM 121 + +I + +++ A+NEA +I+ L D+ D I + L + +N IIV NK+ Sbjct: 277 ASD-TIERIGIEKSLSAVNEADIIISLFDNSKVCDDEDKKILNILDEIENKEKIIVLNKI 335 Query: 122 D 122 D Sbjct: 336 D 336 >gi|32474218|ref|NP_867212.1| tRNA modification GTPase [Rhodopirellula baltica SH 1] gi|32444756|emb|CAD74757.1| probable tRNA modification GTPase [Rhodopirellula baltica SH 1] Length = 426 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 47/146 (32%), Positives = 87/146 (59%), Gaps = 5/146 (3%) Query: 187 ENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISW 246 + I + G+ V+ +++P R+ + G PNVGKS+L+N+++G+ R +T +G TRD + Sbjct: 203 QTIAANGERGVR-LTEPRRLVLAGPPNVGKSSLMNQIVGFRRSITHDSAGTTRDVLQCDT 261 Query: 247 NWKNHPIEIFDTAGMRKPSRITES---LEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 P+ + DTAG+R+ S +TES +E++ ++++ +V + + +++ + + QD Sbjct: 262 VIAGVPVRMSDTAGIRETSHLTESSVAIEREGIRRASVAVESADLLLIVCQPSTLIDLQD 321 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSD 329 R V N H VV LNK D++SD Sbjct: 322 FRRSLPVSNKTH-VVEVLNKADLLSD 346 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 5/91 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + + G PNVGKS+L N++V + ++ + G TRD L +I GV + DTAGI + Sbjct: 221 LVLAGPPNVGKSSLMNQIVGFRRSITHDSAGTTRDVLQCDTVIAGVPVRMSDTAGIRETS 280 Query: 65 N-----CSIAKQMNDQTELAINEAHLILFLI 90 + +I ++ + +A+ A L+L + Sbjct: 281 HLTESSVAIEREGIRRASVAVESADLLLIVC 311 >gi|240145039|ref|ZP_04743640.1| GTP-binding protein Era [Roseburia intestinalis L1-82] gi|257202864|gb|EEV01149.1| GTP-binding protein Era [Roseburia intestinalis L1-82] gi|291535364|emb|CBL08476.1| GTP-binding protein Era [Roseburia intestinalis M50/1] gi|291538175|emb|CBL11286.1| GTP-binding protein Era [Roseburia intestinalis XB6B4] Length = 302 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 61/167 (36%), Positives = 88/167 (52%), Gaps = 13/167 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRL---YGQAIINGVIFNIVDTAGIA 61 + I+G PNVGKSTL N L+ +K+A+ N P TR+R+ Y ++F +DT GI Sbjct: 10 VTIIGRPNVGKSTLMNHLIGQKIAITSNKPQTTRNRIQTVYTDMERGQIVF--LDTPGIH 67 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 KN + + M + E +NE +IL+L++ I + I L+K P+I+V NK+ Sbjct: 68 KAKN-KLGEYMVNTAEHTLNEVDVILWLVEPSNFIGAGEQHIIEQLKKTKTPVILVINKV 126 Query: 122 DT--RIAQRNFYEIYS--LDFKEIVEISAEHDLGTSELHSVIFKIFK 164 DT R F + Y DF EIV SA L L +V+ IFK Sbjct: 127 DTVSRDKILEFIDTYRKVYDFAEIVPASA---LRAQNLDTVLDMIFK 170 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 33/124 (26%), Positives = 62/124 (50%), Gaps = 4/124 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISW-NWKNHPIEIFDTAGMRKP 264 + ++GRPNVGKSTL+N L+G +T ++ TR+ + + + + I DT G+ K Sbjct: 10 VTIIGRPNVGKSTLMNHLIGQKIAITSNKPQTTRNRIQTVYTDMERGQIVFLDTPGIHKA 69 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 L + V + ++ + + L++ + + I++ + T V+L +NK Sbjct: 70 KN---KLGEYMVNTAEHTLNEVDVILWLVEPSNFIGAGEQHIIEQLKKTKTPVILVINKV 126 Query: 325 DMVS 328 D VS Sbjct: 127 DTVS 130 >gi|149193806|ref|ZP_01870904.1| tRNA modification GTPase TrmE [Caminibacter mediatlanticus TB-2] gi|149135759|gb|EDM24237.1| tRNA modification GTPase TrmE [Caminibacter mediatlanticus TB-2] Length = 443 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 43/136 (31%), Positives = 76/136 (55%), Gaps = 4/136 (2%) Query: 190 TSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWK 249 T E + I ++A+VG+PNVGKS+++N+LL R + +G TRD++ Sbjct: 200 TLEASKRREGILSGYKVAIVGKPNVGKSSILNKLLNKQRAIVSDIAGTTRDTIEEDIQIG 259 Query: 250 NHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDS 309 +H I I DTAG+R + +E+ V++S +S++ + + + D + F K+D I+D Sbjct: 260 SHLIRIIDTAGIRAAK---DEIEKIGVERSKESIKKADIVLAVFDGS-EFNKEDEEILDL 315 Query: 310 VFNTGHAVVLALNKWD 325 + N V++ +NK D Sbjct: 316 IKNLDKDVIIVINKVD 331 Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 52/149 (34%), Positives = 86/149 (57%), Gaps = 8/149 (5%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 Y +AIVG PNVGKS++ N+L+ K+ A+V + G TRD + I + I+DTAGI Sbjct: 214 YKVAIVGKPNVGKSSILNKLLNKQRAIVSDIAGTTRDTIEEDIQIGSHLIRIIDTAGIRA 273 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 K+ I K ++++ +I +A ++L + D + D I ++ + +IIV NK+D Sbjct: 274 AKD-EIEKIGVERSKESIKKADIVLAVFDG-SEFNKEDEEILDLIKNLDKDVIIVINKVD 331 Query: 123 TRIA-QRNFYEIYSLDFKEIVEISAEHDL 150 I N+++ +FK IV+ISA+ D+ Sbjct: 332 KGIKINLNYFK----NFK-IVKISAKEDI 355 >gi|296134494|ref|YP_003641741.1| tRNA modification GTPase TrmE [Thermincola sp. JR] gi|296033072|gb|ADG83840.1| tRNA modification GTPase TrmE [Thermincola potens JR] Length = 458 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 61/179 (34%), Positives = 98/179 (54%), Gaps = 5/179 (2%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 I+G PNVGKS+L N LVK+K A+V + PG TRD + I G+ I+DTAGI + ++ Sbjct: 225 IIGKPNVGKSSLLNALVKEKRAIVTDIPGTTRDVIEEFVSIRGIPLKILDTAGIRETEDV 284 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD-TRI 125 + K +++ A+ +A LF++D + I+ D I +FL K++ II++NK D T Sbjct: 285 -VEKIGVQRSKEALEQADFFLFVVDVASEISSEDMEIAAFL--KDLSGIIIANKTDLTGG 341 Query: 126 AQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 R+ + LD +V +S + G EL I I + E++ +N R+E + Sbjct: 342 LNRDLQKELGLDVP-VVAMSLLNGQGLDELEEKIVDIVYNNEFHSVDEILVSNVRHERA 399 Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 47/183 (25%), Positives = 93/183 (50%), Gaps = 14/183 (7%) Query: 192 EGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNH 251 E S K + L+ ++G+PNVGKS+L+N L+ R + G TRD + + + Sbjct: 209 ESADSGKIFREGLKTVIIGKPNVGKSSLLNALVKEKRAIVTDIPGTTRDVIEEFVSIRGI 268 Query: 252 PIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVF 311 P++I DTAG+R+ + E + V++S +++ + + ++D +D+ I + F Sbjct: 269 PLKILDTAGIRETEDVVEKI---GVQRSKEALEQADFFLFVVDVASEISSEDMEI--AAF 323 Query: 312 NTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSV 371 + ++ NK D+ L +DL+ + ++P + +N G+GLD+L + Sbjct: 324 LKDLSGIIIANKTDLTG---GLNRDLQKELGLDVPVVAMSLLN------GQGLDELEEKI 374 Query: 372 LEI 374 ++I Sbjct: 375 VDI 377 >gi|294673439|ref|YP_003574055.1| tRNA modification GTPase TrmE [Prevotella ruminicola 23] gi|294472346|gb|ADE81735.1| tRNA modification GTPase TrmE [Prevotella ruminicola 23] Length = 448 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 59/166 (35%), Positives = 86/166 (51%), Gaps = 27/166 (16%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG NVGKSTL NRL+K A+V + G TRD + ING+ F +DTAGI Sbjct: 219 VAIVGKTNVGKSTLLNRLLKDDRAIVSDVHGTTRDTIEDTIDINGITFRFIDTAGI---- 274 Query: 65 NCSIAKQMNDQTE--------LAINEAHLILFLIDSKAGITPYDHAITSFLRK-KNIPII 115 +Q D+ E AI++A ++L+LID++ P I L+ +N +I Sbjct: 275 -----RQTQDEVEQIGITRTYAAIDKARIVLWLIDAE----PSTEEINDILQHTENKKLI 325 Query: 116 IVSNKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 ++ NK D A N Y + + F + ISA+ G EL I++ Sbjct: 326 VIKNKADK--ADNNSYNLLNYPF---ITISAKFGTGIEELEQAIYE 366 Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 49/170 (28%), Positives = 85/170 (50%), Gaps = 24/170 (14%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VG+ NVGKSTL+NRLL +R + G TRD++ + + DTAG+R+ Sbjct: 219 VAIVGKTNVGKSTLLNRLLKDDRAIVSDVHGTTRDTIEDTIDINGITFRFIDTAGIRQTQ 278 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLAL-NKW 324 + +EQ + ++ ++ + L+DA E+ I D + +T + ++ + NK Sbjct: 279 ---DEVEQIGITRTYAAIDKARIVLWLIDAEPSTEE----INDILQHTENKKLIVIKNKA 331 Query: 325 DMV-SDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 D ++ NLL N P I TIS + G G+++L ++ E Sbjct: 332 DKADNNSYNLL---------NYPFI------TISAKFGTGIEELEQAIYE 366 >gi|225873776|ref|YP_002755235.1| tRNA modification GTPase TrmE [Acidobacterium capsulatum ATCC 51196] gi|225794461|gb|ACO34551.1| tRNA modification GTPase TrmE [Acidobacterium capsulatum ATCC 51196] Length = 486 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 42/119 (35%), Positives = 73/119 (61%), Gaps = 3/119 (2%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AIVG PNVGKS+LFNRLV+++ A+V PG TRD + + + G+ +VDTAG+ +G Sbjct: 234 TLAIVGRPNVGKSSLFNRLVERERAIVTAMPGTTRDLVSERVSLGGIPLELVDTAGLREG 293 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + + + E A+ +AHL++ +++ ++ + A+ + L + ++V NK D Sbjct: 294 ADEAETIGIQKSRE-ALADAHLVMLVVEGNTPLSEEEQALAASLAGRR--ALLVRNKSD 349 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 56/197 (28%), Positives = 101/197 (51%), Gaps = 17/197 (8%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 L +A+VGRPNVGKS+L NRL+ R + + G TRD VS + P+E+ DTAG+R+ Sbjct: 233 LTLAIVGRPNVGKSSLFNRLVERERAIVTAMPGTTRDLVSERVSLGGIPLELVDTAGLRE 292 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 + E++ ++KS +++ +++++ P +++ + S+ G +L NK Sbjct: 293 GADEAETI---GIQKSREALADAHLVMLVVEGNTPLSEEEQALAASL--AGRRALLVRNK 347 Query: 324 WDMVSDKLNLLQDLRTKAI----------KNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 D+V K +LL D + +A+ K + +I + S TGEG+ L ++L+ Sbjct: 348 SDLVQQK-SLL-DTQPEALFASPPEASSEKESETVTNIRAVSTSALTGEGIAGLRETLLQ 405 Query: 374 INKLWKTRITTSYLNSW 390 + + + L S Sbjct: 406 MMQAEGMGSESGMLTSL 422 >gi|254423905|ref|ZP_05037623.1| tRNA modification GTPase TrmE [Synechococcus sp. PCC 7335] gi|196191394|gb|EDX86358.1| tRNA modification GTPase TrmE [Synechococcus sp. PCC 7335] Length = 459 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 56/156 (35%), Positives = 81/156 (51%), Gaps = 5/156 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKS+L N K A+V N PG TRD + Q I+ G+ ++DTAGI Sbjct: 226 VAIIGQPNVGKSSLLNAWSKSDRAIVTNLPGTTRDVVESQLIVGGIPIQVLDTAGIHAAT 285 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N + K +++ A A L+L ID+ G T D A+ + + K+ P IIV NK+D Sbjct: 286 N-EVEKIGIERSLTAAQSADLVLLTIDATVGWTAADQAL--YEQIKDTPHIIVVNKID-- 340 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 + + L IV +A + G EL + I Sbjct: 341 LLADSHPTTLPLPHSPIVHTAAAVNHGIPELEAAIL 376 Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 37/126 (29%), Positives = 74/126 (58%), Gaps = 5/126 (3%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 L++A++G+PNVGKS+L+N +R + + G TRD V PI++ DTAG+ Sbjct: 224 LKVAIIGQPNVGKSSLLNAWSKSDRAIVTNLPGTTRDVVESQLIVGGIPIQVLDTAGIHA 283 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 T +E+ +++S+ + ++ + ++ +DAT+ + D + + + +T H +V +NK Sbjct: 284 A---TNEVEKIGIERSLTAAQSADLVLLTIDATVGWTAADQALYEQIKDTPHIIV--VNK 338 Query: 324 WDMVSD 329 D+++D Sbjct: 339 IDLLAD 344 >gi|148240676|ref|YP_001226063.1| tRNA modification GTPase TrmE [Synechococcus sp. WH 7803] gi|205829179|sp|A5GPA1|MNME_SYNPW RecName: Full=tRNA modification GTPase mnmE gi|147849215|emb|CAK24766.1| tRNA modification GTPase [Synechococcus sp. WH 7803] Length = 460 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 54/162 (33%), Positives = 87/162 (53%), Gaps = 15/162 (9%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI---A 61 +A+VG PNVGKS+L NRL +++ A+V + PG TRD L + ++ GV ++DTAGI + Sbjct: 229 VALVGRPNVGKSSLLNRLSRRERAIVTDLPGTTRDLLESEIVLEGVPITLLDTAGIRATS 288 Query: 62 DG-KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 D + IA+ + A+ A L+L L D G TP D A+ + +P ++V NK Sbjct: 289 DAVERLGIARSHD-----ALASADLVLLLFDLSVGWTPDDEALRQRI-PAAVPHLLVGNK 342 Query: 121 MDTRIAQ-RNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 +D ++ R + D + +SA G +EL + + Sbjct: 343 VDVAVSDARAGTSGSAADIR----LSASTGAGEAELVQAVLE 380 Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 34/104 (32%), Positives = 60/104 (57%), Gaps = 3/104 (2%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + LR+A+VGRPNVGKS+L+NRL R + G TRD + + PI + DTA Sbjct: 223 LRQGLRVALVGRPNVGKSSLLNRLSRRERAIVTDLPGTTRDLLESEIVLEGVPITLLDTA 282 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 G+R S +++E+ + +S ++ + + ++L D ++ + D Sbjct: 283 GIRATS---DAVERLGIARSHDALASADLVLLLFDLSVGWTPDD 323 >gi|225849761|ref|YP_002729995.1| tRNA modification GTPase TrmE [Persephonella marina EX-H1] gi|225645890|gb|ACO04076.1| tRNA modification GTPase TrmE [Persephonella marina EX-H1] Length = 452 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 44/131 (33%), Positives = 75/131 (57%), Gaps = 5/131 (3%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 I + +++A+VGRPNVGKS+L N L+GY R + G TRD + + + K P+++ DTA Sbjct: 212 IREGIKLAIVGRPNVGKSSLFNALVGYERAIVSEYRGTTRDFIEETVSIKGIPVKLLDTA 271 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R+ + +E +KK+ + + + I + D + +DLRI + + VV Sbjct: 272 GLRETE---DKIELIGIKKAKEKIEEADVVIFVFDLSEGLTDEDLRIYEQIKYKDPIVV- 327 Query: 320 ALNKWDMVSDK 330 NK D+V++K Sbjct: 328 -GNKSDLVNEK 337 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 55/187 (29%), Positives = 91/187 (48%), Gaps = 38/187 (20%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKS+LFN LV + A+V + G TRD + I G+ ++DTAG+ Sbjct: 218 LAIVGRPNVGKSSLFNALVGYERAIVSEYRGTTRDFIEETVSIKGIPVKLLDTAGL---- 273 Query: 65 NCSIAKQMNDQTEL--------AINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIII 116 ++ D+ EL I EA +++F+ D G+T D I ++ K+ PI++ Sbjct: 274 -----RETEDKIELIGIKKAKEKIEEADVVIFVFDLSEGLTDEDLRIYEQIKYKD-PIVV 327 Query: 117 -----VSNKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHP 171 + N+ + I ++ +Y FK ++ +S + L IF H Sbjct: 328 GNKSDLVNEKELDIFRKKYY------FKNVLFVSTKLQKNLDHLEEEIF---------HK 372 Query: 172 LEMIENN 178 L +IE++ Sbjct: 373 LGIIEDS 379 >gi|281357768|ref|ZP_06244254.1| tRNA modification GTPase TrmE [Victivallis vadensis ATCC BAA-548] gi|281315715|gb|EFA99742.1| tRNA modification GTPase TrmE [Victivallis vadensis ATCC BAA-548] Length = 442 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 55/177 (31%), Positives = 90/177 (50%), Gaps = 23/177 (12%) Query: 196 SVKNISKPLR----IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNH 251 + + I LR + + GRPN GKS+L+NRLLG R + S G TRD++ S + Sbjct: 200 ATRGIGATLRDGVNLVIAGRPNAGKSSLLNRLLGMERAIVTSIPGTTRDTIEASTVLRGL 259 Query: 252 PIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVF 311 P+ + DTAG+R S + +EQ V++S +S+ + T LLDA+ ++ DL + + Sbjct: 260 PVRLTDTAGIRSSS---DPIEQLGVERSRRSIEGAQVTFWLLDAS--GDELDLELAEMAR 314 Query: 312 NTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLM 368 + + NK D+ + LP++ D IS +TGEG++ L+ Sbjct: 315 HPAPGRIAVWNKLDLAPQ-------------RALPEL-DGPTVRISAKTGEGIEKLL 357 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 39/129 (30%), Positives = 63/129 (48%), Gaps = 4/129 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + I G PN GKS+L NRL+ + A+V + PG TRD + ++ G+ + DTAGI Sbjct: 214 LVIAGRPNAGKSSLLNRLLGMERAIVTSIPGTTRDTIEASTVLRGLPVRLTDTAGIRSSS 273 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + I + +++ +I A + +L+D+ D + R I V NK+D Sbjct: 274 D-PIEQLGVERSRRSIEGAQVTFWLLDASG--DELDLELAEMARHPAPGRIAVWNKLDL- 329 Query: 125 IAQRNFYEI 133 QR E+ Sbjct: 330 APQRALPEL 338 >gi|168187283|ref|ZP_02621918.1| tRNA modification GTPase TrmE [Clostridium botulinum C str. Eklund] gi|169294804|gb|EDS76937.1| tRNA modification GTPase TrmE [Clostridium botulinum C str. Eklund] Length = 459 Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 67/209 (32%), Positives = 106/209 (50%), Gaps = 31/209 (14%) Query: 167 YPNHPLEMIENNKRNEESPK--ENITS------EGKSSVKNISKPLRIAVVGRPNVGKST 218 YP LE + + K E K + I S EGK + + L +VG+PNVGKS+ Sbjct: 183 YPEDDLEEVTSEKGRESVSKLVDEIDSLLAHADEGKI----LREGLNTVIVGKPNVGKSS 238 Query: 219 LINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKK 278 L+N LL R + G TRD + + + PI+I DTAG+R + E + V+K Sbjct: 239 LLNALLMETRAIVTDVPGTTRDVIEEYMSIEGIPIKIVDTAGIRDTDDVVEKI---GVEK 295 Query: 279 SMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVS--DKLNLLQD 336 S + + + + T+++LD + + +D I++ + + + V+ LNK D+ S DK L++ Sbjct: 296 SREKINSSDLTVLVLDNSRSLDNEDKEIINFIKDKKYIVL--LNKVDLESKIDK-EALKE 352 Query: 337 LRTKAIKNLPQIGDIYINTISGRTGEGLD 365 L +K YI IS +TG GLD Sbjct: 353 LNSK-----------YIIEISAKTGSGLD 370 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 55/176 (31%), Positives = 91/176 (51%), Gaps = 4/176 (2%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PNVGKS+L N L+ + A+V + PG TRD + I G+ IVDTAGI D + Sbjct: 228 IVGKPNVGKSSLLNALLMETRAIVTDVPGTTRDVIEEYMSIEGIPIKIVDTAGIRDTDDV 287 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 + K +++ IN + L + ++D+ + D I +F++ K +++ ++++I Sbjct: 288 -VEKIGVEKSREKINSSDLTVLVLDNSRSLDNEDKEIINFIKDKKYIVLLNKVDLESKID 346 Query: 127 QRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 + E+ S K I+EISA+ G + VI ++F MI N + E Sbjct: 347 KEALKELNS---KYIIEISAKTGSGLDKFKEVIKELFFSGKVTSKDVMITNTRHKE 399 >gi|171464336|ref|YP_001798449.1| tRNA modification GTPase TrmE [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193874|gb|ACB44835.1| tRNA modification GTPase TrmE [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 454 Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 63/213 (29%), Positives = 107/213 (50%), Gaps = 23/213 (10%) Query: 167 YPNHPLEMIENNKRNEE--SPKENITS--EGKSSVKNISKPLRIAVVGRPNVGKSTLINR 222 +P +E +EN + + + KE + + G K + +++ + G PNVGKS+LINR Sbjct: 180 FPEEEIEFLENAQARQRLVTVKEKLHTLRAGAKQGKILRDGVQLVLAGAPNVGKSSLINR 239 Query: 223 LLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQS 282 L+G + +G TRD V S P+ I DTAG+R+ + + E+ K +++S S Sbjct: 240 LVGEEVAIVTPIAGTTRDRVRESITIDGVPMHIMDTAGLRETADLVEA---KGIERSWDS 296 Query: 283 VRTCETTIVLLDATIPFEKQDLRI-VDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKA 341 +R + I L DA +K DL+ + + AV+ +NK D++SD +K+ Sbjct: 297 IRLADLVIFLTDAQSGAQKDDLKTQILKELPSKCAVLEVVNKADLLSD--------HSKS 348 Query: 342 IKNLPQIGDIYINTISGRTGEGLDDLMVSVLEI 374 P G + IS +TG G++ L +L + Sbjct: 349 ----PSTGALL---ISAKTGAGIELLKQKILAL 374 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 44/120 (36%), Positives = 70/120 (58%), Gaps = 4/120 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + + GAPNVGKS+L NRLV +++A+V G TRDR+ I+GV +I+DTAG+ + Sbjct: 223 LVLAGAPNVGKSSLINRLVGEEVAIVTPIAGTTRDRVRESITIDGVPMHIMDTAGLRETA 282 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRK--KNIPIIIVSNKMD 122 + AK + + +I A L++FL D+++G D T L++ ++ V NK D Sbjct: 283 DLVEAKGIERSWD-SIRLADLVIFLTDAQSG-AQKDDLKTQILKELPSKCAVLEVVNKAD 340 >gi|219856806|ref|YP_002473928.1| hypothetical protein CKR_3463 [Clostridium kluyveri NBRC 12016] gi|219570530|dbj|BAH08514.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 465 Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 68/227 (29%), Positives = 114/227 (50%), Gaps = 20/227 (8%) Query: 144 ISAEHDLGTSELHSVIFKIFKQ-KYPNHPLEMIENN----KRNEESPKENITSEGKSSVK 198 IS E +L EL +I I YP LE + ++ K N+ + N K Sbjct: 165 ISKEINLLREELLEIIAHIEATVNYPEEDLEEMTSDQIYLKINKILDEINYILSNAEEGK 224 Query: 199 NISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDT 258 + + L + +VG+PNVGKS+L+N L+ N+ + G TRD + N PI+I DT Sbjct: 225 IVREGLSVVIVGKPNVGKSSLLNSLIEENKAIVTDIPGTTRDVIEEYMNIGGIPIKIVDT 284 Query: 259 AGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVV 318 AG+RK I E + V+KS + + + I++LD++ +++D I++ V + + + Sbjct: 285 AGIRKTDDIVEKI---GVEKSKEKIDESDLVILMLDSSKELDEEDKEIINYVNHRKY--I 339 Query: 319 LALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLD 365 + LNK D + DK++L ++ + +I S + GEGLD Sbjct: 340 ILLNKTD-IGDKIDL---------NDICNLNSRFIIKTSIKNGEGLD 376 Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 50/162 (30%), Positives = 94/162 (58%), Gaps = 8/162 (4%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 ++ IVG PNVGKS+L N L+++ A+V + PG TRD + I G+ IVDTAGI Sbjct: 231 SVVIVGKPNVGKSSLLNSLIEENKAIVTDIPGTTRDVIEEYMNIGGIPIKIVDTAGIR-- 288 Query: 64 KNCSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 K I +++ ++++ I+E+ L++ ++DS + D I +++ + II+ NK D Sbjct: 289 KTDDIVEKIGVEKSKEKIDESDLVILMLDSSKELDEEDKEIINYVNHR--KYIILLNKTD 346 Query: 123 TRIAQR-NFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 I + + +I +L+ + I++ S ++ G ++ + I ++F Sbjct: 347 --IGDKIDLNDICNLNSRFIIKTSIKNGEGLDKIKNCIKELF 386 >gi|257061940|ref|YP_003139828.1| tRNA modification GTPase TrmE [Cyanothece sp. PCC 8802] gi|256592106|gb|ACV02993.1| tRNA modification GTPase TrmE [Cyanothece sp. PCC 8802] Length = 460 Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 55/160 (34%), Positives = 87/160 (54%), Gaps = 14/160 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKS+L N A+V + PG TRD + Q I+ G+ ++DTAGI + Sbjct: 228 VAIVGRPNVGKSSLLNAWSCSDRAIVTDLPGTTRDVVESQLIVGGIPIQVLDTAGIRETA 287 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + K +++ ++A L+L ID++ G T D AI + + ++ P+I+V NK+D Sbjct: 288 D-RVEKLGVERSRHVASQADLVLLTIDAQMGWTTEDEAI--YQQVQHRPLILVINKIDLG 344 Query: 125 IAQRNFYEIYSLDF----KEIVEISAEHDLGTSELHSVIF 160 +A SL F K+IV+ A + G +L I Sbjct: 345 LAD-------SLSFIPQIKQIVKTVAAQNQGIEQLEKAIL 377 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 48/170 (28%), Positives = 90/170 (52%), Gaps = 19/170 (11%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 L++A+VGRPNVGKS+L+N +R + G TRD V PI++ DTAG+R+ Sbjct: 226 LKVAIVGRPNVGKSSLLNAWSCSDRAIVTDLPGTTRDVVESQLIVGGIPIQVLDTAGIRE 285 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 + + +E+ V++S + ++ +DA + + +D I V + ++L +NK Sbjct: 286 TA---DRVEKLGVERSRHVASQADLVLLTIDAQMGWTTEDEAIYQQVQH--RPLILVINK 340 Query: 324 WDM-VSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVL 372 D+ ++D L+ +PQI I + T++ + +G++ L ++L Sbjct: 341 IDLGLADSLSF-----------IPQIKQI-VKTVAAQN-QGIEQLEKAIL 377 >gi|255994565|ref|ZP_05427700.1| tRNA modification GTPase TrmE [Eubacterium saphenum ATCC 49989] gi|255993278|gb|EEU03367.1| tRNA modification GTPase TrmE [Eubacterium saphenum ATCC 49989] Length = 453 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 54/162 (33%), Positives = 93/162 (57%), Gaps = 5/162 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PN GKS+L N L+ + A++ + G TRD + Q +++G+ ++DTAGI + Sbjct: 223 VAILGKPNAGKSSLLNELLMEDRAIISDIEGTTRDVIEEQILLSGIPITLIDTAGIRESD 282 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N I K+ D++ A NEA ++++LIDS G D + LR + +++ +K D Sbjct: 283 NV-IEKEGIDRSYKAANEADVVVYLIDSTKGPDGEDENVIKRLRADS--LVVCFSKSDLP 339 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQK 166 ++ +N E L F + ++IS + G EL S + KI ++K Sbjct: 340 MSAKN-KENKGL-FDKSIDISIRNKSGMEELKSELRKIAEEK 379 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 33/123 (26%), Positives = 68/123 (55%), Gaps = 5/123 (4%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 +R+A++G+PN GKS+L+N LL +R + G TRD + PI + DTAG+R+ Sbjct: 221 IRVAILGKPNAGKSSLLNELLMEDRAIISDIEGTTRDVIEEQILLSGIPITLIDTAGIRE 280 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 + +E++ + +S ++ + + L+D+T + +D ++ + ++V+ +K Sbjct: 281 SDNV---IEKEGIDRSYKAANEADVVVYLIDSTKGPDGEDENVIKRL--RADSLVVCFSK 335 Query: 324 WDM 326 D+ Sbjct: 336 SDL 338 >gi|257470080|ref|ZP_05634172.1| GTP-binding protein Era [Fusobacterium ulcerans ATCC 49185] gi|317064304|ref|ZP_07928789.1| GTP binding protein [Fusobacterium ulcerans ATCC 49185] gi|313689980|gb|EFS26815.1| GTP binding protein [Fusobacterium ulcerans ATCC 49185] Length = 297 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 57/176 (32%), Positives = 89/176 (50%), Gaps = 7/176 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTL N+LV +K+A+V + G TRD + G +N + +DT GI K Sbjct: 6 IAVVGRPNVGKSTLINKLVSEKVAIVSDKAGTTRDNIKGILNLNNNQYIFIDTPGIHKAK 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITS-FLRKKNIPIIIVSNKMD- 122 + + + M + + + +ILFL+D I+ D + + K P I+V NK+D Sbjct: 66 HL-LGEYMTNSAIRVLKDVDVILFLLDGSQEISTGDQFVMERVMEAKKTPRILVINKIDK 124 Query: 123 ----TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEM 174 A+R + +F IVEIS ++ G L I ++ +P +M Sbjct: 125 LSDEQLAAKREEVKEKLGEFDGIVEISGQYAFGLPRLLEAIEPFMEEGIKYYPDDM 180 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 83/168 (49%), Gaps = 10/168 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IAVVGRPNVGKSTLIN+L+ + ++G TRD++ N N+ DT G+ K Sbjct: 6 IAVVGRPNVGKSTLINKLVSEKVAIVSDKAGTTRDNIKGILNLNNNQYIFIDTPGIHKAK 65 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHA-VVLALNKW 324 + L + +++ ++ + + LLD + D +++ V +L +NK Sbjct: 66 HL---LGEYMTNSAIRVLKDVDVILFLLDGSQEISTGDQFVMERVMEAKKTPRILVINKI 122 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDI-YINTISGRTGEGLDDLMVSV 371 D +SD + L K + ++G+ I ISG+ GL L+ ++ Sbjct: 123 DKLSD-----EQLAAKREEVKEKLGEFDGIVEISGQYAFGLPRLLEAI 165 >gi|322509029|gb|ADX04483.1| era [Acinetobacter baumannii 1656-2] Length = 340 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 55/178 (30%), Positives = 90/178 (50%), Gaps = 6/178 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N L+ +K+++ P TR ++ G + VDT G+ + Sbjct: 40 VAIVGRPNVGKSTLMNHLLGQKLSITSRKPQTTRHKIIGIDSCEKMQAVYVDTPGMHKKE 99 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I K MN A+ + +L+LF+ID++ T D + L+ ++P+I+V NK DT Sbjct: 100 VRAINKMMNRAAHSALRDVNLVLFVIDAQKW-TQNDDLVLEKLKNADMPVILVINKADTF 158 Query: 125 IAQRNFYEIYS-----LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 +R + ++F EIV +SA L I K + P + ++ I + Sbjct: 159 GDKREILPLIQERAKLMNFAEIVPVSALRGANLEHLSETIEKYLPYQPPLYSIDQITD 216 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 41/137 (29%), Positives = 71/137 (51%), Gaps = 5/137 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS-VSISWNWKNHPIEIFDTAGMRKP 264 +A+VGRPNVGKSTL+N LLG +T + TR + I K + + DT GM K Sbjct: 40 VAIVGRPNVGKSTLMNHLLGQKLSITSRKPQTTRHKIIGIDSCEKMQAVYV-DTPGMHK- 97 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 + ++ + + + ++R + ++DA + DL +++ + N V+L +NK Sbjct: 98 -KEVRAINKMMNRAAHSALRDVNLVLFVIDAQKWTQNDDL-VLEKLKNADMPVILVINKA 155 Query: 325 DMVSDKLNLLQDLRTKA 341 D DK +L ++ +A Sbjct: 156 DTFGDKREILPLIQERA 172 >gi|331086948|ref|ZP_08336024.1| tRNA modification GTPase mnmE [Lachnospiraceae bacterium 9_1_43BFAA] gi|330409609|gb|EGG89048.1| tRNA modification GTPase mnmE [Lachnospiraceae bacterium 9_1_43BFAA] Length = 400 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 52/157 (33%), Positives = 88/157 (56%), Gaps = 4/157 (2%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PN GKS+L N L K+ A+V + G TRD L ING+ NI+DTAGI D ++ Sbjct: 168 IVGKPNAGKSSLLNVLAGKERAIVTDIEGTTRDILEENIQINGISLNIIDTAGIRDTEDI 227 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 + K D+ + +A LI++++D+ + D I +R+K I++ + +DT I Sbjct: 228 -VEKIGVDKAKDYAKDADLIIYVVDASRALDENDEQILEMIREKQALILLNKSDLDTVIT 286 Query: 127 QRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 + + Y+ K ++EISA+ + G ++ + ++F Sbjct: 287 -KELLQKYT--EKPMIEISAKQEHGIEKVEHALKEMF 320 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 59/227 (25%), Positives = 106/227 (46%), Gaps = 28/227 (12%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 I + ++ +VG+PN GKS+L+N L G R + G TRD + + + I DTA Sbjct: 160 IKEGIQTVIVGKPNAGKSSLLNVLAGKERAIVTDIEGTTRDILEENIQINGISLNIIDTA 219 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R I E + V K+ + + I ++DA+ ++ D +I++ + ++L Sbjct: 220 GIRDTEDIVEKI---GVDKAKDYAKDADLIIYVVDASRALDENDEQILEMIREKQALILL 276 Query: 320 ALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWK 379 + D V K LLQ K P I IS + G++ + ++ E+ ++ Sbjct: 277 NKSDLDTVITK-ELLQKYTEK-----PMI------EISAKQEHGIEKVEHALKEM--FFE 322 Query: 380 TRITTS---YLNSWLQKTQLQNPPPTIFNRYNRL-KYITQIQSSPPS 422 +++ + Y+ + QKT LQN Y+ L K I I+++ P Sbjct: 323 GKVSFNDEVYITNIRQKTALQNA-------YDSLEKVIGSIENNMPE 362 >gi|237752888|ref|ZP_04583368.1| tRNA modification GTPase TrmE [Helicobacter winghamensis ATCC BAA-430] gi|229375155|gb|EEO25246.1| tRNA modification GTPase TrmE [Helicobacter winghamensis ATCC BAA-430] Length = 462 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 44/175 (25%), Positives = 99/175 (56%), Gaps = 9/175 (5%) Query: 156 HSVIFKIFKQKYPNHPLEMIENNKRNEESPKENITS--EGKSSVKNISKPLRIAVVGRPN 213 HS +F + + P +++EN K+ + +N+ + E + + + ++ ++G+PN Sbjct: 175 HSEVFIDYADE--ELPQDLLENLKQKLQVVLKNLKALLEQSQNKRVLFDGYKLCIIGKPN 232 Query: 214 VGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQ 273 VGKS+L+N LL +R + +G TRDS+ ++ + + + DTAG+R+ T+++E Sbjct: 233 VGKSSLLNALLRNDRAIVSDIAGTTRDSIEENFVLGGYLLRLIDTAGIRES---TDAVEN 289 Query: 274 KTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVD--SVFNTGHAVVLALNKWDM 326 + +K+S++ + + +VL D ++P +D +I++ + +++ +NK D+ Sbjct: 290 EGIKRSLEKAKESDLLLVLFDGSLPLSAEDFQIIELLKAYKLQKKILVLINKTDL 344 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 66/125 (52%), Gaps = 3/125 (2%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 Y + I+G PNVGKS+L N L++ A+V + G TRD + ++ G + ++DTAGI + Sbjct: 223 YKLCIIGKPNVGKSSLLNALLRNDRAIVSDIAGTTRDSIEENFVLGGYLLRLIDTAGIRE 282 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNI--PIIIVSNK 120 + + + E A E+ L+L L D ++ D I L+ + I+++ NK Sbjct: 283 STDAVENEGIKRSLEKA-KESDLLLVLFDGSLPLSAEDFQIIELLKAYKLQKKILVLINK 341 Query: 121 MDTRI 125 D ++ Sbjct: 342 TDLKM 346 >gi|188997612|ref|YP_001931863.1| GTP-binding protein Era [Sulfurihydrogenibium sp. YO3AOP1] gi|188932679|gb|ACD67309.1| GTP-binding protein Era [Sulfurihydrogenibium sp. YO3AOP1] Length = 307 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 61/180 (33%), Positives = 91/180 (50%), Gaps = 14/180 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N ++ K+++V P TR R+ G + +DT G+ G Sbjct: 15 VAIVGRPNVGKSTLLNNIIGTKLSIVSPRPQTTRMRILGVKHLPDAQIIFLDTPGVQKGG 74 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITS-FLRKKNIPIIIVSNKMDT 123 + + K + + I A +IL +ID++ G T D I +L+K + P I+ NK+D Sbjct: 75 DL-LTKSVMEFVISGIESADVILMVIDAETGWTKEDKEIVENYLKKVDKPAILAINKIDK 133 Query: 124 RIAQRNFY--------EIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 +R+ +IY DFKE V ISA +L EL I K + P +P + I Sbjct: 134 --IKRDLVLPLIEESTKIY--DFKEFVPISAIKNLNIDELIETIKKYLPESLPLYPEDQI 189 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 35/129 (27%), Positives = 66/129 (51%), Gaps = 4/129 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VGRPNVGKSTL+N ++G + + TR + + + I DT G++K Sbjct: 15 VAIVGRPNVGKSTLLNNIIGTKLSIVSPRPQTTRMRILGVKHLPDAQIIFLDTPGVQKGG 74 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVF-NTGHAVVLALNKW 324 + L + ++ + + + + ++++DA + K+D IV++ +LA+NK Sbjct: 75 DL---LTKSVMEFVISGIESADVILMVIDAETGWTKEDKEIVENYLKKVDKPAILAINKI 131 Query: 325 DMVSDKLNL 333 D + L L Sbjct: 132 DKIKRDLVL 140 >gi|313892377|ref|ZP_07825969.1| ribosome biogenesis GTPase Era [Dialister microaerophilus UPII 345-E] gi|313119236|gb|EFR42436.1| ribosome biogenesis GTPase Era [Dialister microaerophilus UPII 345-E] Length = 301 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 58/173 (33%), Positives = 89/173 (51%), Gaps = 19/173 (10%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP- 264 IA+VGRPNVGKSTL+N +LG + + + TR+ ++ WN +N I DT GM KP Sbjct: 12 IALVGRPNVGKSTLLNTVLGEKISIVSAHAQTTRNKITGVWNGENSQIVFLDTPGMHKPK 71 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 S++ E + Q TV ++ + +++ P D ++ + N VVL LNK Sbjct: 72 SKLGEVIRQSTV----DAIGEVDIVVMICACDDPPGAGDRYLLSLLENKKTPVVLVLNKI 127 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIY----INTISGRTGEGLDDLMVSVLE 373 D+VS+ +K + Q +Y I +S +TG +D+LM VLE Sbjct: 128 DLVSE---------VAILKKIKQYSQMYNFKEIIPVSAQTGRNMDELM-QVLE 170 Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 56/180 (31%), Positives = 93/180 (51%), Gaps = 9/180 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIV--DTAGIAD 62 IA+VG PNVGKSTL N ++ +K+++V H TR+++ G + NG IV DT G+ Sbjct: 12 IALVGRPNVGKSTLLNTVLGEKISIVSAHAQTTRNKITG--VWNGENSQIVFLDTPGMHK 69 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 K+ + + + T AI E +++ + D + S L K P+++V NK+D Sbjct: 70 PKS-KLGEVIRQSTVDAIGEVDIVVMICACDDPPGAGDRYLLSLLENKKTPVVLVLNKID 128 Query: 123 --TRIAQRNFYEIYS--LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 + +A + YS +FKEI+ +SA+ EL V+ K+ + P +MI + Sbjct: 129 LVSEVAILKKIKQYSQMYNFKEIIPVSAQTGRNMDELMQVLEKMLPEGPKYFPDDMITDQ 188 >gi|262038068|ref|ZP_06011473.1| GTP-binding protein Era [Leptotrichia goodfellowii F0264] gi|261747888|gb|EEY35322.1| GTP-binding protein Era [Leptotrichia goodfellowii F0264] Length = 304 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 61/201 (30%), Positives = 101/201 (50%), Gaps = 9/201 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N+LVK+K+A+V + G TRD++ G I + VDT GI K Sbjct: 13 IAIVGRPNVGKSTLMNKLVKEKVAIVSDKAGTTRDQIKGIVNIGENQYIFVDTPGIHKPK 72 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + + M + ++ LI+F++D I+ D + +R+ P+I+V NK+D Sbjct: 73 HL-LGEHMTEIALETLSNVDLIMFMLDGTKEISTGDIFVNEHIRETKTPVIVVINKIDKM 131 Query: 125 IAQRNFYEIYSL-----DFKEIVEISAEHDLGTSELHSVIFKIFKQK---YPNHPLEMIE 176 + + + +F +I+ ++AE+ +G ++ V K YP + Sbjct: 132 SNEEIEEKKTEIKEKLGEFADIITLTAEYAIGVHKIFEVAEKYLSSDVWFYPEDYYTDLP 191 Query: 177 NNKRNEESPKENITSEGKSSV 197 NK E+ +E I K + Sbjct: 192 VNKIVVETVREKILHNTKDEI 212 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 68/130 (52%), Gaps = 3/130 (2%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 I K IA+VGRPNVGKSTL+N+L+ + ++G TRD + N + DT Sbjct: 7 IMKSGFIAIVGRPNVGKSTLMNKLVKEKVAIVSDKAGTTRDQIKGIVNIGENQYIFVDTP 66 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+ KP + L + + +++++ + + +LD T D+ + + + T V++ Sbjct: 67 GIHKPKHL---LGEHMTEIALETLSNVDLIMFMLDGTKEISTGDIFVNEHIRETKTPVIV 123 Query: 320 ALNKWDMVSD 329 +NK D +S+ Sbjct: 124 VINKIDKMSN 133 >gi|310643039|ref|YP_003947797.1| gtp-binding protein era-like protein [Paenibacillus polymyxa SC2] gi|309247989|gb|ADO57556.1| GTP-binding protein era-like protein [Paenibacillus polymyxa SC2] Length = 300 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 52/150 (34%), Positives = 81/150 (54%), Gaps = 11/150 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N ++ +K+A++ + P TR++++G +DT GI + Sbjct: 11 VAIVGRPNVGKSTLMNHVIGQKIAIMSDKPQTTRNKIHGVYTTEDTQIVFLDTPGIHK-R 69 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + MN ++ E +LFLID+ G+ D I L++ P+I+V NK+D R Sbjct: 70 QSKLGDYMNQTAFNSLGEVEAVLFLIDAAEGLGGGDRFIAEQLKQVKTPVILVLNKID-R 128 Query: 125 IAQ-------RNFYEIYSLDFKEIVEISAE 147 I + ++Y DF EIV ISA+ Sbjct: 129 IEPEALLPLIEQYRKLY--DFAEIVPISAK 156 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/124 (29%), Positives = 61/124 (49%), Gaps = 5/124 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK-P 264 +A+VGRPNVGKSTL+N ++G + + TR+ + + ++ I DT G+ K Sbjct: 11 VAIVGRPNVGKSTLMNHVIGQKIAIMSDKPQTTRNKIHGVYTTEDTQIVFLDTPGIHKRQ 70 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 S++ + + Q + S+ E + L+DA D I + + V+L LNK Sbjct: 71 SKLGDYMNQ----TAFNSLGEVEAVLFLIDAAEGLGGGDRFIAEQLKQVKTPVILVLNKI 126 Query: 325 DMVS 328 D + Sbjct: 127 DRIE 130 >gi|153956503|ref|YP_001397268.1| tRNA modification GTPase TrmE [Clostridium kluyveri DSM 555] gi|189036197|sp|A5N451|MNME_CLOK5 RecName: Full=tRNA modification GTPase mnmE gi|146349361|gb|EDK35897.1| TrmE [Clostridium kluyveri DSM 555] Length = 459 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 68/227 (29%), Positives = 114/227 (50%), Gaps = 20/227 (8%) Query: 144 ISAEHDLGTSELHSVIFKIFKQ-KYPNHPLEMIENN----KRNEESPKENITSEGKSSVK 198 IS E +L EL +I I YP LE + ++ K N+ + N K Sbjct: 159 ISKEINLLREELLEIIAHIEATVNYPEEDLEEMTSDQIYLKINKILDEINYILSNAEEGK 218 Query: 199 NISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDT 258 + + L + +VG+PNVGKS+L+N L+ N+ + G TRD + N PI+I DT Sbjct: 219 IVREGLSVVIVGKPNVGKSSLLNSLIEENKAIVTDIPGTTRDVIEEYMNIGGIPIKIVDT 278 Query: 259 AGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVV 318 AG+RK I E + V+KS + + + I++LD++ +++D I++ V + + + Sbjct: 279 AGIRKTDDIVEKI---GVEKSKEKIDESDLVILMLDSSKELDEEDKEIINYVNHRKY--I 333 Query: 319 LALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLD 365 + LNK D + DK++L ++ + +I S + GEGLD Sbjct: 334 ILLNKTD-IGDKIDL---------NDICNLNSRFIIKTSIKNGEGLD 370 Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 50/162 (30%), Positives = 94/162 (58%), Gaps = 8/162 (4%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 ++ IVG PNVGKS+L N L+++ A+V + PG TRD + I G+ IVDTAGI Sbjct: 225 SVVIVGKPNVGKSSLLNSLIEENKAIVTDIPGTTRDVIEEYMNIGGIPIKIVDTAGIR-- 282 Query: 64 KNCSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 K I +++ ++++ I+E+ L++ ++DS + D I +++ + II+ NK D Sbjct: 283 KTDDIVEKIGVEKSKEKIDESDLVILMLDSSKELDEEDKEIINYVNHR--KYIILLNKTD 340 Query: 123 TRIAQR-NFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 I + + +I +L+ + I++ S ++ G ++ + I ++F Sbjct: 341 --IGDKIDLNDICNLNSRFIIKTSIKNGEGLDKIKNCIKELF 380 >gi|4467679|emb|CAB37791.1| GTP-binding protein homologue [Helicobacter pylori] Length = 170 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 85/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ + LIL+++D K+ TP D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKPAQMSDLILYVVDGKS--TPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+DT + Y S + IS H+ G S L I Sbjct: 123 KIDTDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 48/171 (28%), Positives = 80/171 (46%), Gaps = 10/171 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +++ ++ +K + S + + ++D +DL++ VF T L +NK D Sbjct: 70 LLSKEIKALNLKPAQMS----DLILYVVDGKSTPSDEDLKLFREVFKTNPNCFLVINKID 125 Query: 326 MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 +DK + R A + I+ R L D ++S L +N+ Sbjct: 126 --TDK----EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSALNLNQ 170 >gi|53804478|ref|YP_113919.1| GTP-binding protein Era [Methylococcus capsulatus str. Bath] gi|53758239|gb|AAU92530.1| GTP-binding protein Era [Methylococcus capsulatus str. Bath] Length = 293 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 54/179 (30%), Positives = 93/179 (51%), Gaps = 8/179 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTL N L+ +K+++V P TR R+ G VDT GI G Sbjct: 6 VALVGRPNVGKSTLLNHLLGQKLSIVSRRPQTTRHRILGIKTDGRGQVIYVDTPGIHGGA 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 ++ + +N ++ +IL+L+D +AG P D + + +++ +P+I+V NK+D R Sbjct: 66 RRAMNRYLNRTAISSLLGVDVILWLVD-RAGWLPDDELVMARIKEAKLPVILVINKVD-R 123 Query: 125 IAQRNFYEIYSLD------FKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 I ++ + + F EIV ISA + + L + + + P +P + I + Sbjct: 124 IEGKDTLLPFLAEANATGLFSEIVPISALKGINLAVLEERVLALLPEGEPIYPEDQISD 182 Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 64/130 (49%), Gaps = 5/130 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV-SISWNWKNHPIEIFDTAGMRKP 264 +A+VGRPNVGKSTL+N LLG + + TR + I + + I + DT G+ Sbjct: 6 VALVGRPNVGKSTLLNHLLGQKLSIVSRRPQTTRHRILGIKTDGRGQVIYV-DTPGIHGG 64 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +R ++ + + ++ S+ + + L+D +L ++ + V+L +NK Sbjct: 65 AR--RAMNRYLNRTAISSLLGVDVILWLVDRAGWLPDDEL-VMARIKEAKLPVILVINKV 121 Query: 325 DMVSDKLNLL 334 D + K LL Sbjct: 122 DRIEGKDTLL 131 >gi|254478023|ref|ZP_05091407.1| tRNA modification GTPase TrmE [Carboxydibrachium pacificum DSM 12653] gi|214036027|gb|EEB76717.1| tRNA modification GTPase TrmE [Carboxydibrachium pacificum DSM 12653] Length = 460 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 60/180 (33%), Positives = 94/180 (52%), Gaps = 8/180 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+K+ A+V + PG TRD + + G+ ++DTAGI D Sbjct: 226 AIIGKPNVGKSSLLNALLKENRAIVTDIPGTTRDIIEEYLNVKGIPIRLIDTAGIRDTDE 285 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD--T 123 + K ++++ + EA L+LF+ID+ ++ D+ I L KN II V NK+D Sbjct: 286 L-VEKIGVERSKEVLGEADLVLFVIDASRELSKEDYEIFDILTGKN--IIFVLNKIDLPK 342 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK-IFKQKYPNHPLEMIENNKRNE 182 +I + + IVE+S +G +L I+ +FK E+I N + E Sbjct: 343 KIDEEELRNLTKDGI--IVEVSTVKKIGLEKLEETIYNLVFKGNVTIGNEEIITNTRHKE 400 Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 44/127 (34%), Positives = 71/127 (55%), Gaps = 5/127 (3%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 I + L+ A++G+PNVGKS+L+N LL NR + G TRD + N K PI + DTA Sbjct: 219 IREGLKTAIIGKPNVGKSSLLNALLKENRAIVTDIPGTTRDIIEEYLNVKGIPIRLIDTA 278 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R + E + V++S + + + + ++DA+ K+D I D + TG ++ Sbjct: 279 GIRDTDELVEKI---GVERSKEVLGEADLVLFVIDASRELSKEDYEIFDIL--TGKNIIF 333 Query: 320 ALNKWDM 326 LNK D+ Sbjct: 334 VLNKIDL 340 >gi|262373077|ref|ZP_06066356.1| GTP-binding protein Era [Acinetobacter junii SH205] gi|262313102|gb|EEY94187.1| GTP-binding protein Era [Acinetobacter junii SH205] Length = 341 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 55/176 (31%), Positives = 87/176 (49%), Gaps = 6/176 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N L+ +K+++ P TR ++ G VDT G+ + Sbjct: 41 VAIVGRPNVGKSTLMNHLLGQKLSITSRKPQTTRHKIVGIDSREKSQAVFVDTPGMHKKE 100 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I K MN A+ + +L+LF++D++ T D + L+ +P+I+V NK+DT Sbjct: 101 VRAINKMMNRAAHSALRDVNLVLFVVDAQKW-TQNDELVLEKLKNAEMPVILVINKLDTF 159 Query: 125 IAQRNFYEIYS-----LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 + + +DF EIV +SA L I K + P + L+ I Sbjct: 160 ENKNEALPLIRERAKLMDFAEIVPVSALRGANLEHLRDTIEKYLPYQAPLYSLDQI 215 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/137 (29%), Positives = 69/137 (50%), Gaps = 5/137 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS-VSISWNWKNHPIEIFDTAGMRKP 264 +A+VGRPNVGKSTL+N LLG +T + TR V I K+ + DT GM K Sbjct: 41 VAIVGRPNVGKSTLMNHLLGQKLSITSRKPQTTRHKIVGIDSREKSQAV-FVDTPGMHKK 99 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 ++ + + + ++R + ++DA + + D +++ + N V+L +NK Sbjct: 100 E--VRAINKMMNRAAHSALRDVNLVLFVVDAQ-KWTQNDELVLEKLKNAEMPVILVINKL 156 Query: 325 DMVSDKLNLLQDLRTKA 341 D +K L +R +A Sbjct: 157 DTFENKNEALPLIRERA 173 >gi|225377579|ref|ZP_03754800.1| hypothetical protein ROSEINA2194_03229 [Roseburia inulinivorans DSM 16841] gi|225210555|gb|EEG92909.1| hypothetical protein ROSEINA2194_03229 [Roseburia inulinivorans DSM 16841] Length = 457 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 58/185 (31%), Positives = 99/185 (53%), Gaps = 4/185 (2%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PN GKS+L N LV ++ A+V + G TRD L Q +NG++ NI+DTAGI D ++ Sbjct: 225 IVGKPNAGKSSLLNFLVGEEKAIVTDIAGTTRDVLEEQINLNGILLNIIDTAGIRDTEDV 284 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 + K ++ + +N A L+++++D+ + DH I L+ ++ I++ NK D Sbjct: 285 -VEKIGVERAKKYLNNADLVIYVVDTSTALDENDHEIMELLKDRH--AIVLLNKSDLSPV 341 Query: 127 QRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEESPK 186 +I K+++ ISA+ G +L I ++F E+ N R++ S + Sbjct: 342 T-TVEDIRKHLDKKMISISAKEQTGMDDLEETIKEMFFSGEVTFNDEVYITNIRHKTSLQ 400 Query: 187 ENITS 191 E + S Sbjct: 401 EALRS 405 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 53/205 (25%), Positives = 101/205 (49%), Gaps = 20/205 (9%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + + +VG+PN GKS+L+N L+G + + +G TRD + N + I D Sbjct: 215 KMLKEGISTVIVGKPNAGKSSLLNFLVGEEKAIVTDIAGTTRDVLEEQINLNGILLNIID 274 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R + E + V+++ + + + I ++D + ++ D I++ + HA+ Sbjct: 275 TAGIRDTEDVVEKI---GVERAKKYLNNADLVIYVVDTSTALDENDHEIME-LLKDRHAI 330 Query: 318 VLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKL 377 VL LNK D+ + ++D+R K + +IS + G+DDL ++ E+ Sbjct: 331 VL-LNKSDL--SPVTTVEDIRKHLDKKMI--------SISAKEQTGMDDLEETIKEM--F 377 Query: 378 WKTRITTS---YLNSWLQKTQLQNP 399 + +T + Y+ + KT LQ Sbjct: 378 FSGEVTFNDEVYITNIRHKTSLQEA 402 >gi|188587519|ref|YP_001919064.1| tRNA modification GTPase TrmE [Natranaerobius thermophilus JW/NM-WN-LF] gi|205415781|sp|B2A470|MNME_NATTJ RecName: Full=tRNA modification GTPase mnmE gi|179352206|gb|ACB86476.1| tRNA modification GTPase TrmE [Natranaerobius thermophilus JW/NM-WN-LF] Length = 458 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 57/177 (32%), Positives = 94/177 (53%), Gaps = 14/177 (7%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K I + ++ +VGRPNVGKS+L+N LLG R + G TRD + N K P+ I D Sbjct: 215 KIIREGIKTVIVGRPNVGKSSLLNLLLGEERAIVTEIPGTTRDVLEEVINLKGIPLRIID 274 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ + +EQ VK++ S+ + +V++D++ ++D +I+ Sbjct: 275 TAGIRESE---DKVEQIGVKRTRDSMEQADIILVVIDSSQELSQEDKQIL--TMAQDKTS 329 Query: 318 VLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEI 374 +L LNK D+ +KL++ D K + +P++ IS EGLD L + E+ Sbjct: 330 LLVLNKTDL-HEKLDI--DEIDKLVSQIPKV------RISALKEEGLDKLEEHISEL 377 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 41/116 (35%), Positives = 66/116 (56%), Gaps = 3/116 (2%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PNVGKS+L N L+ ++ A+V PG TRD L + G+ I+DTAGI + ++ Sbjct: 225 IVGRPNVGKSSLLNLLLGEERAIVTEIPGTTRDVLEEVINLKGIPLRIIDTAGIRESED- 283 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + + +T ++ +A +IL +IDS ++ D I + + K ++V NK D Sbjct: 284 KVEQIGVKRTRDSMEQADIILVVIDSSQELSQEDKQILTMAQDKT--SLLVLNKTD 337 >gi|122700673|emb|CAL87925.1| GTPase [Helicobacter pylori] Length = 170 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 53/164 (32%), Positives = 86/164 (52%), Gaps = 6/164 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + ++NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIVLNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKATQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 K+D + Y S + IS H+ G S L I + Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSVL 166 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 51/171 (29%), Positives = 84/171 (49%), Gaps = 12/171 (7%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIVLNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKATQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEIN 375 D +DK + R A + I+ R L D ++SVL +N Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSVLNLN 169 >gi|149192068|ref|ZP_01870293.1| GTP-binding protein Era [Vibrio shilonii AK1] gi|148834093|gb|EDL51105.1| GTP-binding protein Era [Vibrio shilonii AK1] Length = 329 Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 54/177 (30%), Positives = 91/177 (51%), Gaps = 8/177 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N ++ +K+++ P TR R+ G VDT G+ + Sbjct: 35 VAIVGRPNVGKSTLLNHILGQKISITSRKPQTTRHRIMGVDTDGDYQAIYVDTPGLHIEE 94 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN ++++ +L+LFL+D T D + + LRK + P+I+ NK+D Sbjct: 95 KRAINRLMNRAANSSLSDVNLVLFLVDG-THWTDDDEMVLNKLRKSDFPVILCMNKVDN- 152 Query: 125 IAQRNFYEIY------SLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 + RN ++ +DF ++V ISA+H T L + + + + P E + Sbjct: 153 VKDRNDVMLHMHELSKKMDFVDVVPISAKHGKNTDVLRKHVREHLPEAVHHFPEEYV 209 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 63/130 (48%), Gaps = 5/130 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMR-KP 264 +A+VGRPNVGKSTL+N +LG +T + TR + ++ DT G+ + Sbjct: 35 VAIVGRPNVGKSTLLNHILGQKISITSRKPQTTRHRIMGVDTDGDYQAIYVDTPGLHIEE 94 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 R L + S+ V + L+D T + D +++ + + V+L +NK Sbjct: 95 KRAINRLMNRAANSSLSDVNLV---LFLVDGT-HWTDDDEMVLNKLRKSDFPVILCMNKV 150 Query: 325 DMVSDKLNLL 334 D V D+ +++ Sbjct: 151 DNVKDRNDVM 160 >gi|261855985|ref|YP_003263268.1| GTP-binding protein Era [Halothiobacillus neapolitanus c2] gi|261836454|gb|ACX96221.1| GTP-binding protein Era [Halothiobacillus neapolitanus c2] Length = 308 Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 53/173 (30%), Positives = 84/173 (48%), Gaps = 10/173 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYG--QAIINGVIFNIVDTAGIAD 62 +AIVG PNVGKS+L NRLV +K+++ P TR R+ G V+F VDT GI Sbjct: 19 VAIVGRPNVGKSSLLNRLVGQKISITAPKPQTTRHRITGILSEPRGQVVF--VDTPGIHQ 76 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 G + ++ +Q+N + L+LF++ S D + +R+ +P I++ NK+D Sbjct: 77 GGSDALNRQLNRTARSGFDGVDLVLFVVQS-GRFNEEDAGVLELIRQSGLPTILLINKID 135 Query: 123 TRIAQRNFYEIYS-----LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNH 170 + + + DF + +SA D G L +IFK P + Sbjct: 136 LLQDKTALFPFLAQMQTRFDFLALYPLSAHRDRGFGGLLDLIFKHLPSGEPMY 188 Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 32/130 (24%), Positives = 69/130 (53%), Gaps = 3/130 (2%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP 264 ++A+VGRPNVGKS+L+NRL+G +T + TR ++ + + DT G+ + Sbjct: 18 QVAIVGRPNVGKSSLLNRLVGQKISITAPKPQTTRHRITGILSEPRGQVVFVDTPGIHQG 77 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++L ++ + + + + ++ + F ++D +++ + +G +L +NK Sbjct: 78 G--SDALNRQLNRTARSGFDGVDLVLFVVQSG-RFNEEDAGVLELIRQSGLPTILLINKI 134 Query: 325 DMVSDKLNLL 334 D++ DK L Sbjct: 135 DLLQDKTALF 144 >gi|327539637|gb|EGF26245.1| tRNA modification GTPase TrmE [Rhodopirellula baltica WH47] Length = 404 Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 46/146 (31%), Positives = 87/146 (59%), Gaps = 5/146 (3%) Query: 187 ENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISW 246 + I + G+ V+ +++P R+ + G PNVGKS+L+N+++G+ R +T +G TRD + Sbjct: 181 QTIATNGERGVR-LTEPRRLVLAGPPNVGKSSLMNQIVGFRRSITHDSAGTTRDVLQCDT 239 Query: 247 NWKNHPIEIFDTAGMRKPSRITES---LEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 P+ + DTAG+R+ S +TES +E++ ++++ ++ + + +++ + + QD Sbjct: 240 VIAGVPVRMSDTAGIRETSHLTESSVAIEREGIRRASVAIESADLLLIVCQPSTLIDLQD 299 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSD 329 R V N H VV LNK D++SD Sbjct: 300 FRRSLPVSNKTH-VVEVLNKADLLSD 324 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 5/91 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + + G PNVGKS+L N++V + ++ + G TRD L +I GV + DTAGI + Sbjct: 199 LVLAGPPNVGKSSLMNQIVGFRRSITHDSAGTTRDVLQCDTVIAGVPVRMSDTAGIRETS 258 Query: 65 N-----CSIAKQMNDQTELAINEAHLILFLI 90 + +I ++ + +AI A L+L + Sbjct: 259 HLTESSVAIEREGIRRASVAIESADLLLIVC 289 >gi|313681708|ref|YP_004059446.1| tRNA modification GTPase trme [Sulfuricurvum kujiense DSM 16994] gi|313154568|gb|ADR33246.1| tRNA modification GTPase trmE [Sulfuricurvum kujiense DSM 16994] Length = 447 Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 42/139 (30%), Positives = 76/139 (54%), Gaps = 5/139 (3%) Query: 190 TSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWK 249 T E + + R+A++G+PNVGKS+L+N LL Y R + +G TRD++ Sbjct: 201 TLESSRRRSGLMQGFRVAIIGKPNVGKSSLLNALLDYERAIVSDIAGTTRDTIEEQVRIG 260 Query: 250 NHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDS 309 H I + DTAG+R S + +E+ +++S+ ++ + I L DA+ +++D I+D Sbjct: 261 THLIRLVDTAGIRNAS---DEIERIGIERSIAAIENADVVIALFDASREIDEEDRSIIDL 317 Query: 310 V--FNTGHAVVLALNKWDM 326 V + + + +NK D+ Sbjct: 318 VERYRSEKPFICIVNKSDL 336 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 40/122 (32%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + +AI+G PNVGKS+L N L+ + A+V + G TRD + Q I + +VDTAGI + Sbjct: 215 FRVAIIGKPNVGKSSLLNALLDYERAIVSDIAGTTRDTIEEQVRIGTHLIRLVDTAGIRN 274 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLR--KKNIPIIIVSNK 120 + I + +++ AI A +++ L D+ I D +I + + P I + NK Sbjct: 275 ASD-EIERIGIERSIAAIENADVVIALFDASREIDEEDRSIIDLVERYRSEKPFICIVNK 333 Query: 121 MD 122 D Sbjct: 334 SD 335 >gi|269120355|ref|YP_003308532.1| GTP-binding protein Era [Sebaldella termitidis ATCC 33386] gi|268614233|gb|ACZ08601.1| GTP-binding protein Era [Sebaldella termitidis ATCC 33386] Length = 293 Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 53/175 (30%), Positives = 92/175 (52%), Gaps = 6/175 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKST+ N+L+++K+A+V N G TRDR+ G + +DT GI + Sbjct: 6 IAIVGRPNVGKSTMMNKLIEEKVAIVSNKSGTTRDRIKGIVNKGENQYIFMDTPGIHKPR 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD-- 122 + + + M + + I+FL+D I+ D + ++ N P+++V NK+D Sbjct: 66 HL-LGEHMTNVALETLKGVDAIMFLLDGTQEISTGDEFVNDHVKAVNTPVVLVINKIDKL 124 Query: 123 -TRIAQRNFYEIYSL--DFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEM 174 + Q EI DF +I+ I+AE+ +G +++ + + +P +M Sbjct: 125 SDQEIQDKLLEIKEKLGDFDKIITIAAEYGIGMHKIYDELREYLTSDVWYYPEDM 179 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 50/160 (31%), Positives = 83/160 (51%), Gaps = 9/160 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA+VGRPNVGKST++N+L+ + ++SG TRD + N + DT G+ KP Sbjct: 6 IAIVGRPNVGKSTMMNKLIEEKVAIVSNKSGTTRDRIKGIVNKGENQYIFMDTPGIHKPR 65 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + L + ++++++ + + LLD T D + D V VVL +NK D Sbjct: 66 HL---LGEHMTNVALETLKGVDAIMFLLDGTQEISTGDEFVNDHVKAVNTPVVLVINKID 122 Query: 326 MVSDKLNLLQDLRTKAIKNLPQIGDI-YINTISGRTGEGL 364 +SD Q+++ K ++ ++GD I TI+ G G+ Sbjct: 123 KLSD-----QEIQDKLLEIKEKLGDFDKIITIAAEYGIGM 157 >gi|225849321|ref|YP_002729485.1| GTP-binding protein Era [Sulfurihydrogenibium azorense Az-Fu1] gi|225643668|gb|ACN98718.1| GTP-binding protein Era [Sulfurihydrogenibium azorense Az-Fu1] Length = 300 Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 57/180 (31%), Positives = 96/180 (53%), Gaps = 14/180 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTL N ++ K+++V P TR R+ G + +D G+ G Sbjct: 8 VALVGRPNVGKSTLLNNILGTKLSIVSPKPQTTRMRILGVKHLPDAQIIFLDAPGVQKGG 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAIT-SFLRKKNIPIIIVSNKMDT 123 + ++K + + ++ +A +I+ +I++ G T D I ++++K N P+I+ NK+D Sbjct: 68 DL-LSKSVLESAVASMEDADVIVMIIEADKGWTKEDKEIVENYIKKYNKPVILAINKIDK 126 Query: 124 RIAQRNFY--------EIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 QR+ +IY DFKE V ISA ++ EL + I K + P +P +MI Sbjct: 127 --IQRDLVLPLIEESTKIY--DFKEYVPISAIKNINIDELLNTIKKYLPESPPLYPEDMI 182 Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 36/129 (27%), Positives = 67/129 (51%), Gaps = 4/129 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VGRPNVGKSTL+N +LG + + TR + + + I D G++K Sbjct: 8 VALVGRPNVGKSTLLNNILGTKLSIVSPKPQTTRMRILGVKHLPDAQIIFLDAPGVQKGG 67 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNT-GHAVVLALNKW 324 + L + ++ ++ S+ + +++++A + K+D IV++ V+LA+NK Sbjct: 68 DL---LSKSVLESAVASMEDADVIVMIIEADKGWTKEDKEIVENYIKKYNKPVILAINKI 124 Query: 325 DMVSDKLNL 333 D + L L Sbjct: 125 DKIQRDLVL 133 >gi|237750079|ref|ZP_04580559.1| tRNA modification GTPase mnmE [Helicobacter bilis ATCC 43879] gi|229374266|gb|EEO24657.1| tRNA modification GTPase mnmE [Helicobacter bilis ATCC 43879] Length = 450 Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 40/128 (31%), Positives = 78/128 (60%), Gaps = 5/128 (3%) Query: 202 KPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGM 261 + +++ ++G+PNVGKS+L+N LL +R + +G TRD+++ + + + + DTAG+ Sbjct: 215 QDIKLCIIGKPNVGKSSLLNLLLMQDRAIVSDIAGTTRDTITAVLDICGNLVSLTDTAGI 274 Query: 262 RKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFN--TGHAVVL 319 T+S+E + ++KSM+S R E + + D + P K+D I+D + + + +V++ Sbjct: 275 HTS---TDSIEMQGIEKSMKSARESEIILCVFDISKPMSKEDFEILDFLKSECSNKSVLI 331 Query: 320 ALNKWDMV 327 LNK D+ Sbjct: 332 VLNKNDLA 339 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 43/130 (33%), Positives = 73/130 (56%), Gaps = 5/130 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + I+G PNVGKS+L N L+ + A+V + G TRD + I G + ++ DTAGI Sbjct: 219 LCIIGKPNVGKSSLLNLLLMQDRAIVSDIAGTTRDTITAVLDICGNLVSLTDTAGIHTST 278 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKK--NIPIIIVSNKMD 122 + SI Q +++ + E+ +IL + D ++ D I FL+ + N ++IV NK D Sbjct: 279 D-SIEMQGIEKSMKSARESEIILCVFDISKPMSKEDFEILDFLKSECSNKSVLIVLNKND 337 Query: 123 TRIAQRNFYE 132 +A++N ++ Sbjct: 338 --LARQNTHD 345 >gi|122702513|emb|CAL88447.1| GTPase [Helicobacter pylori] Length = 170 Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 55/161 (34%), Positives = 85/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRLV++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLVRERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 66/121 (54%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL+ +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLVRERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|325663376|ref|ZP_08151826.1| tRNA modification GTPase TrmE [Lachnospiraceae bacterium 4_1_37FAA] gi|325470830|gb|EGC74060.1| tRNA modification GTPase TrmE [Lachnospiraceae bacterium 4_1_37FAA] Length = 400 Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 88/157 (56%), Gaps = 4/157 (2%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PN GKS+L N L K+ A+V + G TRD L ING+ NI+DTAGI D ++ Sbjct: 168 IVGKPNAGKSSLLNVLAGKERAIVTDIEGTTRDILEENIQINGISLNIIDTAGIRDTEDI 227 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 + K D+ + +A L+++++D+ + D I +R+K I++ + +DT I Sbjct: 228 -VEKIGVDKAKDYAKDADLVIYVVDASRALDENDEQILEMIREKQALILLNKSDLDTVIT 286 Query: 127 QRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 + + Y+ K ++EISA+ + G ++ + ++F Sbjct: 287 -KELLQKYT--EKPMIEISAKQEHGIEKVEHALKEMF 320 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 59/227 (25%), Positives = 106/227 (46%), Gaps = 28/227 (12%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 I + ++ +VG+PN GKS+L+N L G R + G TRD + + + I DTA Sbjct: 160 IKEGIQTVIVGKPNAGKSSLLNVLAGKERAIVTDIEGTTRDILEENIQINGISLNIIDTA 219 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R I E + V K+ + + I ++DA+ ++ D +I++ + ++L Sbjct: 220 GIRDTEDIVEKI---GVDKAKDYAKDADLVIYVVDASRALDENDEQILEMIREKQALILL 276 Query: 320 ALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWK 379 + D V K LLQ K P I IS + G++ + ++ E+ ++ Sbjct: 277 NKSDLDTVITK-ELLQKYTEK-----PMI------EISAKQEHGIEKVEHALKEM--FFE 322 Query: 380 TRITTS---YLNSWLQKTQLQNPPPTIFNRYNRL-KYITQIQSSPPS 422 +++ + Y+ + QKT LQN Y+ L K I I+++ P Sbjct: 323 GKVSFNDEVYITNIRQKTALQNA-------YDSLEKVIGSIENNMPE 362 >gi|312623584|ref|YP_004025197.1| tRNA modification GTPase trme [Caldicellulosiruptor kronotskyensis 2002] gi|312204051|gb|ADQ47378.1| tRNA modification GTPase TrmE [Caldicellulosiruptor kronotskyensis 2002] Length = 455 Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 71/201 (35%), Positives = 105/201 (52%), Gaps = 22/201 (10%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 IYT+ IVG PNVGKS+L NRL+K++ A+V + PG TRD + I GV + DTAG+ Sbjct: 221 IYTV-IVGRPNVGKSSLLNRLLKEEKAIVTDIPGTTRDVIEEVLDIEGVPIILADTAGVR 279 Query: 62 DGKNCSIAKQMNDQTEL-AINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 K I +++ + L +I A L+LF+++S +GI D I F KN I++ NK Sbjct: 280 --KTEDIVEKIGVKKTLESIERADLVLFMVES-SGILQEDLEI--FETIKNKRFIVIVNK 334 Query: 121 MD--TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF-KIFKQKYPNHPLEMIEN 177 +D +++Q + I+ KE + IS EHD + I ++ Q H +I N Sbjct: 335 IDKEVKVSQDDIKRIFG---KEGIFISVEHDKNLELVEKAIANEVLNQNIETHDSVLITN 391 Query: 178 NKRNE---------ESPKENI 189 + E S KENI Sbjct: 392 LRHKELLLKAKEFLVSAKENI 412 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 42/128 (32%), Positives = 72/128 (56%), Gaps = 6/128 (4%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K I + +VGRPNVGKS+L+NRLL + + G TRD + + + PI + D Sbjct: 215 KVIKSGIYTVIVGRPNVGKSSLLNRLLKEEKAIVTDIPGTTRDVIEEVLDIEGVPIILAD 274 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+RK I E + VKK+++S+ + + +++++ ++DL I +++ N V Sbjct: 275 TAGVRKTEDIVEKI---GVKKTLESIERADLVLFMVESS-GILQEDLEIFETIKNKRFIV 330 Query: 318 VLALNKWD 325 + +NK D Sbjct: 331 I--VNKID 336 >gi|197303325|ref|ZP_03168365.1| hypothetical protein RUMLAC_02048 [Ruminococcus lactaris ATCC 29176] gi|197297609|gb|EDY32169.1| hypothetical protein RUMLAC_02048 [Ruminococcus lactaris ATCC 29176] Length = 300 Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 88/164 (53%), Gaps = 13/164 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAII----NGVIFNIVDTAGI 60 + ++G PNVGKSTL N L+ +K+A+ N P TR+R+ Q ++ ++F VDT GI Sbjct: 10 VTLIGRPNVGKSTLMNHLIGQKIAITSNKPQTTRNRI--QTVLTTEEGQIVF--VDTPGI 65 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 KN + + M + E ++NE ++L+L++ I + I L+K P+I+V NK Sbjct: 66 HKAKN-KLGEYMVNIAERSLNEVDVVLWLVEPSNFIGAGEKHIIEQLKKVKTPVILVINK 124 Query: 121 MDT--RIAQRNFYEIY--SLDFKEIVEISAEHDLGTSELHSVIF 160 +D R F + Y DF EIV +SA T EL VI Sbjct: 125 IDMVKREEILAFIDTYRKEYDFAEIVPVSARTGDNTDELVKVIL 168 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 43/169 (25%), Positives = 78/169 (46%), Gaps = 12/169 (7%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 + ++GRPNVGKSTL+N L+G +T ++ TR+ + + I DT G+ K Sbjct: 10 VTLIGRPNVGKSTLMNHLIGQKIAITSNKPQTTRNRIQTVLTTEEGQIVFVDTPGIHKAK 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + V + +S+ + + L++ + + I++ + V+L +NK D Sbjct: 70 N---KLGEYMVNIAERSLNEVDVVLWLVEPSNFIGAGEKHIIEQLKKVKTPVILVINKID 126 Query: 326 MVSDK--LNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVL 372 MV + L + R + I +S RTG+ D+L+ +L Sbjct: 127 MVKREEILAFIDTYR-------KEYDFAEIVPVSARTGDNTDELVKVIL 168 >gi|187934969|ref|YP_001885107.1| GTP-binding protein Era [Clostridium botulinum B str. Eklund 17B] gi|226741198|sp|B2TMB9|ERA_CLOBB RecName: Full=GTPase Era gi|187723122|gb|ACD24343.1| GTP-binding protein Era [Clostridium botulinum B str. Eklund 17B] Length = 295 Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 55/148 (37%), Positives = 83/148 (56%), Gaps = 9/148 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNI--VDTAGIAD 62 + IVG PNVGKSTL N ++ +K+++V N P TR+ + Q I+ G + I VDT GI Sbjct: 7 VTIVGRPNVGKSTLLNYIMGEKLSIVSNKPQTTRNNI--QTILTGEDYQIVFVDTPGIHK 64 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 K+ + + M + + + N+ L+LFL + I D I L+ K P+ +V NK+D Sbjct: 65 PKH-KLGEYMVNSAKDSTNDVDLVLFLTNPDEEIGKGDKFILESLKDKKCPVYLVLNKID 123 Query: 123 TRIAQR--NFYEIYS--LDFKEIVEISA 146 +R E+YS +FKEIV I+A Sbjct: 124 ESTPERVAKSLEMYSSEFNFKEIVPIAA 151 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 3/120 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 + +VGRPNVGKSTL+N ++G + ++ TR+++ +++ I DT G+ KP Sbjct: 7 VTIVGRPNVGKSTLLNYIMGEKLSIVSNKPQTTRNNIQTILTGEDYQIVFVDTPGIHKPK 66 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + V + S + + L + K D I++S+ + V L LNK D Sbjct: 67 H---KLGEYMVNSAKDSTNDVDLVLFLTNPDEEIGKGDKFILESLKDKKCPVYLVLNKID 123 >gi|195953055|ref|YP_002121345.1| tRNA modification GTPase TrmE [Hydrogenobaculum sp. Y04AAS1] gi|195932667|gb|ACG57367.1| tRNA modification GTPase TrmE [Hydrogenobaculum sp. Y04AAS1] Length = 438 Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 51/134 (38%), Positives = 76/134 (56%), Gaps = 9/134 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKS+LFN L++K+ A+V + PG TRD + + ING +VDTAGI Sbjct: 216 VAIVGKPNVGKSSLFNTLLQKRRAIVSDIPGTTRDYIEDRLEINGFPVKLVDTAGIRKTD 275 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N + +N E + EAH++LF++D + D+ I + KN+ ++ NK D Sbjct: 276 NPIEREGINIAIE-HMKEAHVVLFVVDGSKDLEEEDYFIYDIV--KNLNTLVALNKSDLG 332 Query: 125 IAQRNFYEIYSLDF 138 I + +LDF Sbjct: 333 INSK------TLDF 340 Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 68/123 (55%), Gaps = 5/123 (4%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 +++A+VG+PNVGKS+L N LL R + G TRD + P+++ DTAG+RK Sbjct: 214 IKVAIVGKPNVGKSSLFNTLLQKRRAIVSDIPGTTRDYIEDRLEINGFPVKLVDTAGIRK 273 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 +E++ + +++ ++ + ++D + E++D I D V N ++ALNK Sbjct: 274 TDN---PIEREGINIAIEHMKEAHVVLFVVDGSKDLEEEDYFIYDIVKNLN--TLVALNK 328 Query: 324 WDM 326 D+ Sbjct: 329 SDL 331 >gi|269122719|ref|YP_003310896.1| tRNA modification GTPase TrmE [Sebaldella termitidis ATCC 33386] gi|268616597|gb|ACZ10965.1| tRNA modification GTPase TrmE [Sebaldella termitidis ATCC 33386] Length = 456 Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 55/145 (37%), Positives = 84/145 (57%), Gaps = 11/145 (7%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKSTL N L+K++ A+V + PG TRD + + G+ +VDTAGI + ++ Sbjct: 221 AIIGKPNVGKSTLLNSLLKEERAIVTHIPGTTRDIIEEVINVRGIPLVLVDTAGIRETED 280 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT-- 123 + E+ I ++ LILF++D+ + DH I +R+ N II+ NK+D Sbjct: 281 LVENIGVEKSKEI-IEKSDLILFVLDASRELEKDDHQIIELIRENNKKAIILLNKIDLSR 339 Query: 124 RIAQRNFYEIYSLDF--KEIVEISA 146 +I + N +DF EI+EISA Sbjct: 340 KITREN------IDFFDGEILEISA 358 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 40/120 (33%), Positives = 68/120 (56%), Gaps = 3/120 (2%) Query: 207 AVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSR 266 A++G+PNVGKSTL+N LL R + G TRD + N + P+ + DTAG+R+ Sbjct: 221 AIIGKPNVGKSTLLNSLLKEERAIVTHIPGTTRDIIEEVINVRGIPLVLVDTAGIRETED 280 Query: 267 ITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 + E++ V+KS + + + + +LDA+ EK D +I++ + ++ LNK D+ Sbjct: 281 LVENI---GVEKSKEIIEKSDLILFVLDASRELEKDDHQIIELIRENNKKAIILLNKIDL 337 >gi|77165915|ref|YP_344440.1| GTP-binding protein Era [Nitrosococcus oceani ATCC 19707] gi|76884229|gb|ABA58910.1| GTP-binding protein Era [Nitrosococcus oceani ATCC 19707] Length = 306 Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 55/179 (30%), Positives = 93/179 (51%), Gaps = 10/179 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAI+G PNVGKS+L NR++ +K+++ P TR R+ G + G+ VDT G D + Sbjct: 18 IAIIGRPNVGKSSLLNRILGQKISITSRRPQTTRHRILGIKTLAGIQAIYVDTPGFQDKE 77 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + +N + + E LILF+I++ T D I LR+ +PI++V NK+D Sbjct: 78 RRLMNRYLNRAIDSTLEEVDLILFVIEA-FQFTKDDEWILQRLRRCAVPIVLVLNKVDRI 136 Query: 125 IAQRNFY-EIYSL----DFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 I +++ I +L +F I+ +SA + L S + ++ P P+ E+ Sbjct: 137 IDKKSLLPAIATLSKKREFAAIIPVSAWKGDNVAVLESKVAELL----PEGPMAYPEDQ 191 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 69/153 (45%), Gaps = 7/153 (4%) Query: 187 ENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISW 246 E +T EG ++ IA++GRPNVGKS+L+NR+LG +T + TR + Sbjct: 3 EMLTQEGTQGIRCGY----IAIIGRPNVGKSSLLNRILGQKISITSRRPQTTRHRILGIK 58 Query: 247 NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRI 306 DT G + R L + + +++ S I+ + F K D I Sbjct: 59 TLAGIQAIYVDTPGFQDKER---RLMNRYLNRAIDSTLEEVDLILFVIEAFQFTKDDEWI 115 Query: 307 VDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRT 339 + + +VL LNK D + DK +LL + T Sbjct: 116 LQRLRRCAVPIVLVLNKVDRIIDKKSLLPAIAT 148 >gi|122702597|emb|CAL88488.1| GTPase [Helicobacter pylori] Length = 170 Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 85/164 (51%), Gaps = 6/164 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL K+++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRRIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 K+D + Y S + IS H+ G S L I + Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISALIDAILSVL 166 Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 50/171 (29%), Positives = 85/171 (49%), Gaps = 12/171 (7%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRRIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKTNPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEIN 375 D +DK + R A + I+ R L D ++SVL++N Sbjct: 125 D--NDK----EKERAYAFSSFGIPKSFNISVSHNRGISALIDAILSVLDLN 169 >gi|126701303|ref|YP_001090200.1| tRNA modification GTPase TrmE [Clostridium difficile 630] gi|255102894|ref|ZP_05331871.1| tRNA modification GTPase TrmE [Clostridium difficile QCD-63q42] gi|255308714|ref|ZP_05352885.1| tRNA modification GTPase TrmE [Clostridium difficile ATCC 43255] gi|123362962|sp|Q181S7|MNME_CLOD6 RecName: Full=tRNA modification GTPase mnmE gi|115252740|emb|CAJ70585.1| transfer RNA modification GTPase MnmE [Clostridium difficile] Length = 459 Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 52/164 (31%), Positives = 90/164 (54%), Gaps = 9/164 (5%) Query: 167 YPNHPLEMI--ENNKRNEESPKENITS--EGKSSVKNISKPLRIAVVGRPNVGKSTLINR 222 YP +E I + K + K++I + S K + + L+ +VG+PNVGKS+L+N Sbjct: 181 YPEEDIEHITYQTLKEKTDELKKDIKKLYDTAESGKILREGLKTVIVGKPNVGKSSLLNS 240 Query: 223 LLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQS 282 +LG NR + G TRD + N K P++I DTAG+R I E + V+KS +S Sbjct: 241 ILGENRAIVTDIPGTTRDVIEEFVNIKGIPLKIVDTAGIRDTDDIVEKI---GVEKSKES 297 Query: 283 VRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 + + +++LDA+ ++D+ I++ + + ++ LNK D+ Sbjct: 298 FTSADLIVMVLDASRKLSEEDIEILEKLKD--KQTIVLLNKNDL 339 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 50/177 (28%), Positives = 90/177 (50%), Gaps = 4/177 (2%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PNVGKS+L N ++ + A+V + PG TRD + I G+ IVDTAGI D + Sbjct: 226 IVGKPNVGKSSLLNSILGENRAIVTDIPGTTRDVIEEFVNIKGIPLKIVDTAGIRDTDDI 285 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 + K ++++ + A LI+ ++D+ ++ D I L+ K +++ N + I Sbjct: 286 -VEKIGVEKSKESFTSADLIVMVLDASRKLSEEDIEILEKLKDKQTIVLLNKNDLKQEIE 344 Query: 127 QRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK-IFKQKYPNHPLEMIENNKRNE 182 + + ++ I++ISA G EL I ++K N+ ++ N++ + Sbjct: 345 EEKI--LKYVENNSIIKISALQQEGIEELQDKIESMVYKGSIKNNSSLVVTNSRHKD 399 >gi|331091567|ref|ZP_08340404.1| GTP-binding protein Era [Lachnospiraceae bacterium 2_1_46FAA] gi|330403732|gb|EGG83286.1| GTP-binding protein Era [Lachnospiraceae bacterium 2_1_46FAA] Length = 298 Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 56/165 (33%), Positives = 89/165 (53%), Gaps = 13/165 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAII----NGVIFNIVDTAGI 60 + ++G PNVGKSTL N L+ +K+A+ N P TR+R+ Q ++ V+F VDT GI Sbjct: 10 VTLIGRPNVGKSTLMNYLIGQKIAITSNKPQTTRNRI--QTVLTTEQGQVVF--VDTPGI 65 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 KN + + M + E +NE ++L+L++ I + I L++ P+I+V NK Sbjct: 66 HKAKN-KLGEYMVNVAERTLNEVDVVLWLVEPSTFIGAGEKHIAEQLKRVKTPVILVINK 124 Query: 121 MDTRIAQRNFYEIYS----LDFKEIVEISAEHDLGTSELHSVIFK 161 +D F I + DF IV +SA++ T EL V+F+ Sbjct: 125 VDMVKKDEVFAFIDAYQKIYDFAAIVPVSAKNGENTEELLKVLFQ 169 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 40/164 (24%), Positives = 75/164 (45%), Gaps = 10/164 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 + ++GRPNVGKSTL+N L+G +T ++ TR+ + + + DT G+ K Sbjct: 10 VTLIGRPNVGKSTLMNYLIGQKIAITSNKPQTTRNRIQTVLTTEQGQVVFVDTPGIHKAK 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + V + +++ + + L++ + + I + + V+L +NK D Sbjct: 70 N---KLGEYMVNVAERTLNEVDVVLWLVEPSTFIGAGEKHIAEQLKRVKTPVILVINKVD 126 Query: 326 MVSDKLNLLQDLRTKAIKNLPQIGDI-YINTISGRTGEGLDDLM 368 MV +D I +I D I +S + GE ++L+ Sbjct: 127 MVK------KDEVFAFIDAYQKIYDFAAIVPVSAKNGENTEELL 164 >gi|322437335|ref|YP_004219547.1| tRNA modification GTPase TrmE [Acidobacterium sp. MP5ACTX9] gi|321165062|gb|ADW70767.1| tRNA modification GTPase TrmE [Acidobacterium sp. MP5ACTX9] Length = 456 Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 46/123 (37%), Positives = 71/123 (57%), Gaps = 7/123 (5%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI-- 60 +T+AIVG PN GKS+LFNRL+ ++ A+V + PG TRD + + I G+ ++DTAG+ Sbjct: 223 FTLAIVGRPNAGKSSLFNRLLVRQRAIVTDQPGTTRDAISERMSIEGIPVELIDTAGLRT 282 Query: 61 -ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 DG +Q ++T +A+ EA L+L ++D A D + + R P + V N Sbjct: 283 APDGPEGEAERQGIERTNVAMAEADLVLHVVDGGALTKDIDEIVVAEAR----PYLRVLN 338 Query: 120 KMD 122 K D Sbjct: 339 KSD 341 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 34/88 (38%), Positives = 53/88 (60%), Gaps = 3/88 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMR-KP 264 +A+VGRPN GKS+L NRLL R + Q G TRD++S + + P+E+ DTAG+R P Sbjct: 225 LAIVGRPNAGKSSLFNRLLVRQRAIVTDQPGTTRDAISERMSIEGIPVELIDTAGLRTAP 284 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVL 292 E++ ++++ +V E +VL Sbjct: 285 DGPEGEAERQGIERT--NVAMAEADLVL 310 >gi|90412087|ref|ZP_01220094.1| GTP-binding protein Era [Photobacterium profundum 3TCK] gi|90327065|gb|EAS43444.1| GTP-binding protein Era [Photobacterium profundum 3TCK] Length = 301 Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 49/148 (33%), Positives = 80/148 (54%), Gaps = 6/148 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL NRLV +K+++ P TR R+ G +G +DT G+ + Sbjct: 10 IAIVGRPNVGKSTLLNRLVGQKLSITSRKPQTTRHRIMGVDTRDGYQAVFIDTPGLHIEE 69 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN ++ + L+LFL+D T D + + L+K +P +++ NK+D Sbjct: 70 KRTINRLMNRAASSSLTDVELVLFLVDGTV-WTADDEMVLNKLKKSGLPTVLLINKVDNV 128 Query: 125 IAQRNFYEIYS-----LDFKEIVEISAE 147 + + + +DF ++V ISA+ Sbjct: 129 KEKGDLFPHLDALSKKMDFVDVVPISAK 156 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/133 (31%), Positives = 65/133 (48%), Gaps = 5/133 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMR-KP 264 IA+VGRPNVGKSTL+NRL+G +T + TR + + DT G+ + Sbjct: 10 IAIVGRPNVGKSTLLNRLVGQKLSITSRKPQTTRHRIMGVDTRDGYQAVFIDTPGLHIEE 69 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 R L + S+ V E + L+D T+ + D +++ + +G VL +NK Sbjct: 70 KRTINRLMNRAASSSLTDV---ELVLFLVDGTV-WTADDEMVLNKLKKSGLPTVLLINKV 125 Query: 325 DMVSDKLNLLQDL 337 D V +K +L L Sbjct: 126 DNVKEKGDLFPHL 138 >gi|320530991|ref|ZP_08032023.1| tRNA modification GTPase TrmE [Selenomonas artemidis F0399] gi|320136740|gb|EFW28690.1| tRNA modification GTPase TrmE [Selenomonas artemidis F0399] Length = 462 Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 53/204 (25%), Positives = 97/204 (47%), Gaps = 14/204 (6%) Query: 192 EGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNH 251 EG + + + + ++ +VGRPNVGKS+L+N LLG R + G TRD + + Sbjct: 213 EGADAGRILREGMKTVIVGRPNVGKSSLLNALLGMERAIVTDVPGTTRDVIEEQIVIEGI 272 Query: 252 PIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVF 311 P+ + DTAG+R +++EQ V ++ + + E + + D P +D ++ + Sbjct: 273 PLRLLDTAGLRAAE---DAVEQIGVARTQRHLADAELVLAVFDGAAPLTPEDEDLIVRLR 329 Query: 312 NTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSV 371 N +++ NK D D + D + D + IS + G GLDDL ++ Sbjct: 330 NCAAEMIILCNKED--RDSVLTAADF---------SMLDAPVLVISAQAGTGLDDLRRAI 378 Query: 372 LEINKLWKTRITTSYLNSWLQKTQ 395 EI + + + L + ++T+ Sbjct: 379 AEIVRRMEGDLGDGALPNVERETE 402 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 56/178 (31%), Positives = 94/178 (52%), Gaps = 3/178 (1%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PNVGKS+L N L+ + A+V + PG TRD + Q +I G+ ++DTAG+ ++ Sbjct: 229 IVGRPNVGKSSLLNALLGMERAIVTDVPGTTRDVIEEQIVIEGIPLRLLDTAGLRAAED- 287 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 ++ + +T+ + +A L+L + D A +TP D + LR +II+ NK D R + Sbjct: 288 AVEQIGVARTQRHLADAELVLAVFDGAAPLTPEDEDLIVRLRNCAAEMIILCNKED-RDS 346 Query: 127 QRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + LD +V ISA+ G +L I +I ++ + + N +R E+ Sbjct: 347 VLTAADFSMLDAPVLV-ISAQAGTGLDDLRRAIAEIVRRMEGDLGDGALPNVERETEA 403 >gi|254433531|ref|ZP_05047039.1| GTP-binding protein Era [Nitrosococcus oceani AFC27] gi|207089864|gb|EDZ67135.1| GTP-binding protein Era [Nitrosococcus oceani AFC27] Length = 303 Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 55/179 (30%), Positives = 93/179 (51%), Gaps = 10/179 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAI+G PNVGKS+L NR++ +K+++ P TR R+ G + G+ VDT G D + Sbjct: 15 IAIIGRPNVGKSSLLNRILGQKISITSRRPQTTRHRILGIKTLAGIQAIYVDTPGFQDKE 74 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + +N + + E LILF+I++ T D I LR+ +PI++V NK+D Sbjct: 75 RRLMNRYLNRAIDSTLEEVDLILFVIEA-FQFTKDDEWILQRLRRCAVPIVLVLNKVDRI 133 Query: 125 IAQRNFY-EIYSL----DFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 I +++ I +L +F I+ +SA + L S + ++ P P+ E+ Sbjct: 134 IDKKSLLPAIATLSKKREFAAIIPVSAWKGDNVAVLESKVAELL----PEGPMAYPEDQ 188 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 40/134 (29%), Positives = 62/134 (46%), Gaps = 3/134 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++GRPNVGKS+L+NR+LG +T + TR + DT G + Sbjct: 15 IAIIGRPNVGKSSLLNRILGQKISITSRRPQTTRHRILGIKTLAGIQAIYVDTPGFQDKE 74 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 R L + + +++ S I+ + F K D I+ + +VL LNK D Sbjct: 75 R---RLMNRYLNRAIDSTLEEVDLILFVIEAFQFTKDDEWILQRLRRCAVPIVLVLNKVD 131 Query: 326 MVSDKLNLLQDLRT 339 + DK +LL + T Sbjct: 132 RIIDKKSLLPAIAT 145 >gi|118474837|ref|YP_891745.1| tRNA modification GTPase TrmE [Campylobacter fetus subsp. fetus 82-40] gi|205829129|sp|A0RNG2|MNME_CAMFF RecName: Full=tRNA modification GTPase mnmE gi|118414063|gb|ABK82483.1| tRNA modification GTPase TrmE [Campylobacter fetus subsp. fetus 82-40] Length = 438 Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 40/131 (30%), Positives = 72/131 (54%), Gaps = 2/131 (1%) Query: 196 SVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEI 255 S K + ++A++GRPNVGKS+++N LL Y R +T +G TRD++ + +H + I Sbjct: 204 SKKGLIDGYKVAIIGRPNVGKSSILNSLLHYERAITSETAGTTRDTIEEQIKFGSHLVRI 263 Query: 256 FDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGH 315 DTAG+R S+E ++ S ++ R + + D++ +D +I++ + N Sbjct: 264 IDTAGIR--DEFDSSIEAAGIEYSKRAAREADIIFCVFDSSQKASLEDRQILEFISNLNK 321 Query: 316 AVVLALNKWDM 326 + LNK D+ Sbjct: 322 KTIYVLNKSDL 332 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 42/120 (35%), Positives = 60/120 (50%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 Y +AI+G PNVGKS++ N L+ + A+ G TRD + Q + I+DTAGI D Sbjct: 212 YKVAIIGRPNVGKSSILNSLLHYERAITSETAGTTRDTIEEQIKFGSHLVRIIDTAGIRD 271 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + SI + ++ A EA +I + DS + D I F+ N I V NK D Sbjct: 272 EFDSSIEAAGIEYSKRAAREADIIFCVFDSSQKASLEDRQILEFISNLNKKTIYVLNKSD 331 >gi|187932414|ref|YP_001887734.1| tRNA modification GTPase TrmE [Clostridium botulinum B str. Eklund 17B] gi|187720567|gb|ACD21788.1| tRNA modification GTPase TrmE [Clostridium botulinum B str. Eklund 17B] Length = 456 Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 53/159 (33%), Positives = 88/159 (55%), Gaps = 9/159 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + I+G PNVGKS+L N L+K+K A+V + PG TRD + I+G+ I DTAGI + + Sbjct: 228 VVIIGKPNVGKSSLLNVLLKEKRAIVTDVPGTTRDIIEEYLNIDGIPIKITDTAGIRETE 287 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + ++ K +++ I EA LI+ ++DS + D I + ++ KN +++ +D R Sbjct: 288 D-TVEKIGVERSREKIEEADLIILILDSSRELEEEDKEIINTIKDKNHIVLLNKTDLDRR 346 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 IA +D + ISA+ G EL + I ++F Sbjct: 347 IAD--------IDLDNQINISAKTGYGIEELKNKIKELF 377 Score = 80.1 bits (196), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 55/175 (31%), Positives = 92/175 (52%), Gaps = 20/175 (11%) Query: 193 GKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHP 252 G K I L + ++G+PNVGKS+L+N LL R + G TRD + N P Sbjct: 215 GADEGKIIRDGLNVVIIGKPNVGKSSLLNVLLKEKRAIVTDVPGTTRDIIEEYLNIDGIP 274 Query: 253 IEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFN 312 I+I DTAG+R+ +++E+ V++S + + + I++LD++ E++D I++++ + Sbjct: 275 IKITDTAGIRETE---DTVEKIGVERSREKIEEADLIILILDSSRELEEEDKEIINTIKD 331 Query: 313 TGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDL 367 H V+ LNK D+ D R I QI IS +TG G+++L Sbjct: 332 KNHIVL--LNKTDL---------DRRIADIDLDNQI------NISAKTGYGIEEL 369 >gi|309390345|gb|ADO78225.1| tRNA modification GTPase trmE [Halanaerobium praevalens DSM 2228] Length = 464 Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 47/116 (40%), Positives = 70/116 (60%), Gaps = 3/116 (2%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PNVGKS+L N +++K A+V + PG TRD + + G+ I+DTAGI + K+ Sbjct: 231 IVGKPNVGKSSLLNYFLEEKRAIVTDIPGTTRDVIEEYINLKGIPLKIIDTAGIRETKD- 289 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 ++ K ++T +A L+LF++D GIT D I + KN P+II+ NK D Sbjct: 290 AVEKIGVEKTRKLAEKADLVLFMLDINQGITAEDREIYQLI--KNKPVIIIVNKTD 343 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 65/123 (52%), Gaps = 5/123 (4%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 L+ +VG+PNVGKS+L+N L R + G TRD + N K P++I DTAG+R+ Sbjct: 227 LKTVIVGKPNVGKSSLLNYFLEEKRAIVTDIPGTTRDVIEEYINLKGIPLKIIDTAGIRE 286 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 +++E+ V+K+ + + + +LD +D I + N V++ +NK Sbjct: 287 TK---DAVEKIGVEKTRKLAEKADLVLFMLDINQGITAEDREIYQLIKN--KPVIIIVNK 341 Query: 324 WDM 326 D+ Sbjct: 342 TDL 344 >gi|56459917|ref|YP_155198.1| GTPase Era [Idiomarina loihiensis L2TR] gi|56178927|gb|AAV81649.1| GTPase Era [Idiomarina loihiensis L2TR] Length = 305 Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 51/176 (28%), Positives = 92/176 (52%), Gaps = 6/176 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL NRL+ +K+++ N P TR R+ G +G VDT G+ + Sbjct: 16 VAIVGRPNVGKSTLINRLLGQKISITSNKPQTTRHRILGVDTDDGCQAIYVDTPGMHKQE 75 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 +I + MN A+ + L+LF++++ + D + +++ +P++++ NK+D Sbjct: 76 PRAINRVMNQTASSALKDVDLVLFVVENLKWLED-DKMVLEKIQRSKVPVVLLVNKVDQL 134 Query: 124 RIAQRNFYEIYSLD----FKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 + +R + L+ F I+ ISA H EL ++ + Y +P + + Sbjct: 135 KDKERLLPHLQWLNEQHKFDAILPISATHGDNVDELRKIVRSHLQPGYHYYPEDYV 190 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 44/136 (32%), Positives = 72/136 (52%), Gaps = 9/136 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIF-DTAGMRK- 263 +A+VGRPNVGKSTLINRLLG +T ++ TR + + + + I+ DT GM K Sbjct: 16 VAIVGRPNVGKSTLINRLLGQKISITSNKPQTTRHRI-LGVDTDDGCQAIYVDTPGMHKQ 74 Query: 264 -PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALN 322 P I + Q T +++ V ++ + + + + D +++ + + VVL +N Sbjct: 75 EPRAINRVMNQ-TASSALKDV----DLVLFVVENLKWLEDDKMVLEKIQRSKVPVVLLVN 129 Query: 323 KWDMVSDKLNLLQDLR 338 K D + DK LL L+ Sbjct: 130 KVDQLKDKERLLPHLQ 145 >gi|122701579|emb|CAL88179.1| GTPase [Helicobacter pylori] Length = 170 Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 54/164 (32%), Positives = 86/164 (52%), Gaps = 6/164 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 K+D + Y S + IS H+ G S L I ++ Sbjct: 123 KIDNDKEKERTYAFSSFGMPKSFNISVSHNRGISALIDAILRVL 166 Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 84/172 (48%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + RT A + I+ R L D ++ VL +N+ Sbjct: 125 D--NDK----EKERTYAFSSFGMPKSFNISVSHNRGISALIDAILRVLNLNQ 170 >gi|54310186|ref|YP_131206.1| GTP-binding protein Era [Photobacterium profundum SS9] gi|46914627|emb|CAG21404.1| putative GTP-binding protein Era [Photobacterium profundum SS9] Length = 301 Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 49/160 (30%), Positives = 83/160 (51%), Gaps = 6/160 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL NRLV +K+++ P TR R+ G +G +DT G+ + Sbjct: 10 IAIVGRPNVGKSTLLNRLVGQKLSITSRKPQTTRHRIMGVDTRDGYQAVFIDTPGLHIEE 69 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN ++ + L+LFL+D T D + + L+K +P +++ NK+D Sbjct: 70 KRTINRLMNRAASSSLTDVELVLFLVDGTM-WTADDEMVLNKLKKSELPTVLLINKVDNV 128 Query: 125 IAQRNFYEIYS-----LDFKEIVEISAEHDLGTSELHSVI 159 + + + +DF ++V ISA+ + ++ Sbjct: 129 KEKGDLFPHLDALSKKMDFVDVVPISAKKGTNVDAVEKIV 168 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 64/133 (48%), Gaps = 5/133 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMR-KP 264 IA+VGRPNVGKSTL+NRL+G +T + TR + + DT G+ + Sbjct: 10 IAIVGRPNVGKSTLLNRLVGQKLSITSRKPQTTRHRIMGVDTRDGYQAVFIDTPGLHIEE 69 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 R L + S+ V E + L+D T+ + D +++ + + VL +NK Sbjct: 70 KRTINRLMNRAASSSLTDV---ELVLFLVDGTM-WTADDEMVLNKLKKSELPTVLLINKV 125 Query: 325 DMVSDKLNLLQDL 337 D V +K +L L Sbjct: 126 DNVKEKGDLFPHL 138 >gi|184159115|ref|YP_001847454.1| GTP-binding protein Era [Acinetobacter baumannii ACICU] gi|183210709|gb|ACC58107.1| GTPase [Acinetobacter baumannii ACICU] Length = 342 Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 55/178 (30%), Positives = 90/178 (50%), Gaps = 6/178 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N L+ +K+++ P TR ++ G + VDT G+ + Sbjct: 42 VAIVGRPNVGKSTLMNHLLGQKLSITSRKPQTTRHKIIGIDSREKMQAVYVDTPGMHKKE 101 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I K MN A+ + +L+LF+ID++ T D + L+ ++P+I+V NK DT Sbjct: 102 VRAINKMMNRAAHSALRDVNLVLFVIDAQKW-TQNDDLVLEKLKNADMPVILVINKADTF 160 Query: 125 IAQRNFYEIYS-----LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 +R + ++F EIV +SA L I K + P + ++ I + Sbjct: 161 GDKREILPLIQERAKLMNFAEIVPVSALRGANLEHLSETIEKYLPYQPPLYSIDQITD 218 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 41/137 (29%), Positives = 71/137 (51%), Gaps = 5/137 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS-VSISWNWKNHPIEIFDTAGMRKP 264 +A+VGRPNVGKSTL+N LLG +T + TR + I K + + DT GM K Sbjct: 42 VAIVGRPNVGKSTLMNHLLGQKLSITSRKPQTTRHKIIGIDSREKMQAVYV-DTPGMHK- 99 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 + ++ + + + ++R + ++DA + DL +++ + N V+L +NK Sbjct: 100 -KEVRAINKMMNRAAHSALRDVNLVLFVIDAQKWTQNDDL-VLEKLKNADMPVILVINKA 157 Query: 325 DMVSDKLNLLQDLRTKA 341 D DK +L ++ +A Sbjct: 158 DTFGDKREILPLIQERA 174 >gi|332875944|ref|ZP_08443730.1| ribosome biogenesis GTPase Era [Acinetobacter baumannii 6014059] gi|323519011|gb|ADX93392.1| GTP-binding protein Era [Acinetobacter baumannii TCDC-AB0715] gi|332735810|gb|EGJ66851.1| ribosome biogenesis GTPase Era [Acinetobacter baumannii 6014059] Length = 340 Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 55/178 (30%), Positives = 90/178 (50%), Gaps = 6/178 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N L+ +K+++ P TR ++ G + VDT G+ + Sbjct: 40 VAIVGRPNVGKSTLMNHLLGQKLSITSRKPQTTRHKIIGIDSREKMQAVYVDTPGMHKKE 99 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I K MN A+ + +L+LF+ID++ T D + L+ ++P+I+V NK DT Sbjct: 100 VRAINKMMNRAAHSALRDVNLVLFVIDAQKW-TQNDDLVLEKLKNADMPVILVINKADTF 158 Query: 125 IAQRNFYEIYS-----LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 +R + ++F EIV +SA L I K + P + ++ I + Sbjct: 159 GDKREILPLIQERAKLMNFAEIVPVSALRGANLEHLSETIEKYLPYQPPLYSIDQITD 216 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 41/137 (29%), Positives = 71/137 (51%), Gaps = 5/137 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS-VSISWNWKNHPIEIFDTAGMRKP 264 +A+VGRPNVGKSTL+N LLG +T + TR + I K + + DT GM K Sbjct: 40 VAIVGRPNVGKSTLMNHLLGQKLSITSRKPQTTRHKIIGIDSREKMQAVYV-DTPGMHK- 97 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 + ++ + + + ++R + ++DA + DL +++ + N V+L +NK Sbjct: 98 -KEVRAINKMMNRAAHSALRDVNLVLFVIDAQKWTQNDDL-VLEKLKNADMPVILVINKA 155 Query: 325 DMVSDKLNLLQDLRTKA 341 D DK +L ++ +A Sbjct: 156 DTFGDKREILPLIQERA 172 >gi|329924033|ref|ZP_08279296.1| ribosome biogenesis GTPase Era [Paenibacillus sp. HGF5] gi|328940872|gb|EGG37180.1| ribosome biogenesis GTPase Era [Paenibacillus sp. HGF5] Length = 290 Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 63/186 (33%), Positives = 97/186 (52%), Gaps = 19/186 (10%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKSTL N+++ +K+A++ + P TR++++G + +DT GI + Sbjct: 1 MAIIGRPNVGKSTLMNQVIGQKIAIMSDKPQTTRNKIHGVYTTSDSQVVFLDTPGIHK-R 59 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD-- 122 + MN + E LFL+D+ GI D I L+K PII+V NK+D Sbjct: 60 QSKLGDYMNQTALSTLGEVEAALFLVDASEGIGGGDRYIAEQLQKIKTPIILVMNKIDKI 119 Query: 123 TRIAQRNFYEIYS--LDFKEIVEISAEHDLGTSELHSVIFKIFK------QKYP-----N 169 A E Y DF EIV ISA+ LG S +++++ +I K Q YP + Sbjct: 120 EPPALLPLIEQYRKLHDFAEIVPISAK--LG-SNVNTLLEQIQKYLPPGPQYYPEDQVTD 176 Query: 170 HPLEMI 175 HP + + Sbjct: 177 HPEQFV 182 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 31/124 (25%), Positives = 63/124 (50%), Gaps = 5/124 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK-P 264 +A++GRPNVGKSTL+N+++G + + TR+ + + + + DT G+ K Sbjct: 1 MAIIGRPNVGKSTLMNQVIGQKIAIMSDKPQTTRNKIHGVYTTSDSQVVFLDTPGIHKRQ 60 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 S++ + + Q ++ ++ E + L+DA+ D I + + ++L +NK Sbjct: 61 SKLGDYMNQ----TALSTLGEVEAALFLVDASEGIGGGDRYIAEQLQKIKTPIILVMNKI 116 Query: 325 DMVS 328 D + Sbjct: 117 DKIE 120 >gi|58337483|ref|YP_194068.1| GTP-binding protein Era [Lactobacillus acidophilus NCFM] gi|81311455|sp|Q5FJT7|ERA_LACAC RecName: Full=GTPase Era gi|58254800|gb|AAV43037.1| GTP-binding protein [Lactobacillus acidophilus NCFM] Length = 301 Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 55/162 (33%), Positives = 90/162 (55%), Gaps = 8/162 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTL N LV +K+A+ N P TR+R+ G + + VDT GI Sbjct: 11 VALVGRPNVGKSTLMNYLVGQKVAITSNKPQTTRNRISGIYTSDRMQVIFVDTPGIFK-P 69 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + M+ + ++N+ L+LF+++ + + D I L++ +P+ +V NK+D + Sbjct: 70 HSKLDDYMDKASLSSLNDVDLVLFMVEPE-DMGKGDQYIADLLKEVKVPVFLVINKVD-Q 127 Query: 125 IAQRNFYEI----YSLD-FKEIVEISAEHDLGTSELHSVIFK 161 I I + LD FKEI+ ISA +G +L + I+K Sbjct: 128 IHPNKLLPIMDSYHKLDGFKEILPISATQGIGIDDLLNTIYK 169 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/165 (30%), Positives = 81/165 (49%), Gaps = 13/165 (7%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP- 264 +A+VGRPNVGKSTL+N L+G +T ++ TR+ +S + + DT G+ KP Sbjct: 11 VALVGRPNVGKSTLMNYLVGQKVAITSNKPQTTRNRISGIYTSDRMQVIFVDTPGIFKPH 70 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 S++ + ++ K S+ S+ + + +++ K D I D + V L +NK Sbjct: 71 SKLDDYMD----KASLSSLNDVDLVLFMVEPE-DMGKGDQYIADLLKEVKVPVFLVINKV 125 Query: 325 DMVS-DKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLM 368 D + +KL + D K G I IS G G+DDL+ Sbjct: 126 DQIHPNKLLPIMDSYHKL------DGFKEILPISATQGIGIDDLL 164 >gi|34483365|emb|CAE10363.1| PUTATIVE TRNA MODIFICATION GTPASE TRME [Wolinella succinogenes] Length = 432 Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 51/135 (37%), Positives = 79/135 (58%), Gaps = 4/135 (2%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 Y +AI+G PNVGKS+L N L+ + A+V + PG TRD + + IVDTAGI + Sbjct: 199 YKLAIIGRPNVGKSSLLNALLLWERAIVSDIPGTTRDTIEESLHLGNHWVRIVDTAGIRE 258 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLR--KKNIPIIIVSNK 120 ++ +I K ++T LA+ E+ ++L L DS ++P D I LR ++N I+++ NK Sbjct: 259 AQD-AIEKIGIERTLLALKESDMVLALFDSSQSLSPEDEQIKELLRAHQENRRILVLFNK 317 Query: 121 MD-TRIAQRNFYEIY 134 D +R Q + E Y Sbjct: 318 SDLSRELQDSELESY 332 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 69/115 (60%), Gaps = 3/115 (2%) Query: 192 EGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNH 251 +G ++ + ++A++GRPNVGKS+L+N LL + R + G TRD++ S + NH Sbjct: 187 QGSKRRSSLVEGYKLAIIGRPNVGKSSLLNALLLWERAIVSDIPGTTRDTIEESLHLGNH 246 Query: 252 PIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRI 306 + I DTAG+R+ +++E+ +++++ +++ + + L D++ +D +I Sbjct: 247 WVRIVDTAGIREAQ---DAIEKIGIERTLLALKESDMVLALFDSSQSLSPEDEQI 298 >gi|168218051|ref|ZP_02643676.1| tRNA modification GTPase TrmE [Clostridium perfringens NCTC 8239] gi|182379938|gb|EDT77417.1| tRNA modification GTPase TrmE [Clostridium perfringens NCTC 8239] Length = 458 Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 51/170 (30%), Positives = 91/170 (53%), Gaps = 17/170 (10%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K I L + +VG+PNVGKS+L+N LL R + +G TRD + N P+ + D Sbjct: 219 KLIRDGLSMVIVGKPNVGKSSLLNALLNEKRAIVTDIAGTTRDVIEEYINLDGIPVRLVD 278 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ + E + V+KS + + + I++LD + +++D I+D + + + V Sbjct: 279 TAGIRETEDVVEKI---GVEKSKEKINEADLVILMLDTSRELDEEDKEIIDYIKDRKYIV 335 Query: 318 VLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDL 367 +L +K++L + L ++ + NL + +S +TG G+DDL Sbjct: 336 LL---------NKVDLDRKLSSEIVDNLENKIE-----LSAKTGFGIDDL 371 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 52/179 (29%), Positives = 98/179 (54%), Gaps = 6/179 (3%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 ++ IVG PNVGKS+L N L+ +K A+V + G TRD + ++G+ +VDTAGI + Sbjct: 226 SMVIVGKPNVGKSSLLNALLNEKRAIVTDIAGTTRDVIEEYINLDGIPVRLVDTAGIRET 285 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 ++ + K ++++ INEA L++ ++D+ + D I +++ + I++ NK+D Sbjct: 286 EDV-VEKIGVEKSKEKINEADLVILMLDTSRELDEEDKEIIDYIKDR--KYIVLLNKVD- 341 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 + ++ EI + + +E+SA+ G +L S I +F + M+ N + E Sbjct: 342 -LDRKLSSEIVD-NLENKIELSAKTGFGIDDLKSKIKDLFFNGSIDAESVMVTNTRHKE 398 >gi|227904119|ref|ZP_04021924.1| GTP-binding protein Era [Lactobacillus acidophilus ATCC 4796] gi|227868138|gb|EEJ75559.1| GTP-binding protein Era [Lactobacillus acidophilus ATCC 4796] Length = 308 Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 55/162 (33%), Positives = 90/162 (55%), Gaps = 8/162 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTL N LV +K+A+ N P TR+R+ G + + VDT GI Sbjct: 18 VALVGRPNVGKSTLMNYLVGQKVAITSNKPQTTRNRISGIYTSDRMQVIFVDTPGIFK-P 76 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + M+ + ++N+ L+LF+++ + + D I L++ +P+ +V NK+D + Sbjct: 77 HSKLDDYMDKASLSSLNDVDLVLFMVEPE-DMGKGDQYIADLLKEVKVPVFLVINKVD-Q 134 Query: 125 IAQRNFYEI----YSLD-FKEIVEISAEHDLGTSELHSVIFK 161 I I + LD FKEI+ ISA +G +L + I+K Sbjct: 135 IHPNKLLPIMDSYHKLDGFKEILPISATQGIGIDDLLNTIYK 176 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/165 (30%), Positives = 81/165 (49%), Gaps = 13/165 (7%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP- 264 +A+VGRPNVGKSTL+N L+G +T ++ TR+ +S + + DT G+ KP Sbjct: 18 VALVGRPNVGKSTLMNYLVGQKVAITSNKPQTTRNRISGIYTSDRMQVIFVDTPGIFKPH 77 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 S++ + ++ K S+ S+ + + +++ K D I D + V L +NK Sbjct: 78 SKLDDYMD----KASLSSLNDVDLVLFMVEPE-DMGKGDQYIADLLKEVKVPVFLVINKV 132 Query: 325 DMVS-DKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLM 368 D + +KL + D K G I IS G G+DDL+ Sbjct: 133 DQIHPNKLLPIMDSYHKL------DGFKEILPISATQGIGIDDLL 171 >gi|188590271|ref|YP_001920268.1| GTP-binding protein Era [Clostridium botulinum E3 str. Alaska E43] gi|251778596|ref|ZP_04821516.1| GTP-binding protein Era [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|226741197|sp|B2V2K0|ERA_CLOBA RecName: Full=GTPase Era gi|188500552|gb|ACD53688.1| GTP-binding protein Era [Clostridium botulinum E3 str. Alaska E43] gi|243082911|gb|EES48801.1| GTP-binding protein Era [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 295 Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 55/148 (37%), Positives = 83/148 (56%), Gaps = 9/148 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNI--VDTAGIAD 62 + IVG PNVGKSTL N ++ +K+++V N P TR+ + Q I+ G + I VDT GI Sbjct: 7 VTIVGRPNVGKSTLLNYIMGEKLSIVSNKPQTTRNNI--QTILTGDDYQIVFVDTPGIHK 64 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 K+ + + M + + + N+ L+LFL + I D I L+ K P+ +V NK+D Sbjct: 65 PKH-KLGEYMVNSAKDSTNDVDLVLFLTNPDEEIGKGDKFILESLKDKKCPVYLVLNKID 123 Query: 123 TRIAQR--NFYEIYS--LDFKEIVEISA 146 +R E+YS +FKEIV I+A Sbjct: 124 ESTPERVAKSLEMYSSEFNFKEIVPIAA 151 Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 3/120 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 + +VGRPNVGKSTL+N ++G + ++ TR+++ ++ I DT G+ KP Sbjct: 7 VTIVGRPNVGKSTLLNYIMGEKLSIVSNKPQTTRNNIQTILTGDDYQIVFVDTPGIHKPK 66 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + V + S + + L + K D I++S+ + V L LNK D Sbjct: 67 H---KLGEYMVNSAKDSTNDVDLVLFLTNPDEEIGKGDKFILESLKDKKCPVYLVLNKID 123 >gi|122701403|emb|CAL88091.1| GTPase [Helicobacter pylori] Length = 170 Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 53/164 (32%), Positives = 86/164 (52%), Gaps = 6/164 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYIVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 K+D + Y S + IS H+ G S L I ++ Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAILRVL 166 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 51/172 (29%), Positives = 85/172 (49%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYIVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D ++ VL++NK Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILRVLDLNK 170 >gi|312881717|ref|ZP_07741494.1| GTP-binding protein Era [Vibrio caribbenthicus ATCC BAA-2122] gi|309370607|gb|EFP98082.1| GTP-binding protein Era [Vibrio caribbenthicus ATCC BAA-2122] Length = 325 Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 50/150 (33%), Positives = 82/150 (54%), Gaps = 8/150 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL NR++ +K+++ P TR R+ G VDT G+ + Sbjct: 34 IAIVGRPNVGKSTLLNRILGQKISITSRKPQTTRHRIMGVDTQGDFQAIYVDTPGLHIEE 93 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN ++++ +L+ FL+D T D + + L+K N P+++ NK+D Sbjct: 94 KRAINRLMNRAANSSLSDVNLVFFLVDG-THWTDDDEMVLTKLQKSNFPVVLCVNKVDN- 151 Query: 125 IAQRNFYEIYSLD------FKEIVEISAEH 148 + RN ++ +D F ++V ISA+H Sbjct: 152 VPDRNQVMMHMMDMSKKMEFVDVVPISAKH 181 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 39/126 (30%), Positives = 58/126 (46%), Gaps = 5/126 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMR-KP 264 IA+VGRPNVGKSTL+NR+LG +T + TR + + DT G+ + Sbjct: 34 IAIVGRPNVGKSTLLNRILGQKISITSRKPQTTRHRIMGVDTQGDFQAIYVDTPGLHIEE 93 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 R L + S+ V L+D T + D ++ + + VVL +NK Sbjct: 94 KRAINRLMNRAANSSLSDVNLV---FFLVDGT-HWTDDDEMVLTKLQKSNFPVVLCVNKV 149 Query: 325 DMVSDK 330 D V D+ Sbjct: 150 DNVPDR 155 >gi|313896881|ref|ZP_07830428.1| tRNA modification GTPase TrmE [Selenomonas sp. oral taxon 137 str. F0430] gi|312974328|gb|EFR39796.1| tRNA modification GTPase TrmE [Selenomonas sp. oral taxon 137 str. F0430] Length = 461 Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 53/204 (25%), Positives = 97/204 (47%), Gaps = 14/204 (6%) Query: 192 EGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNH 251 EG + + + + ++ +VGRPNVGKS+L+N LLG R + G TRD + + Sbjct: 212 EGADAGRILREGMKTVIVGRPNVGKSSLLNALLGMERAIVTDVPGTTRDVIEEQIVIEGI 271 Query: 252 PIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVF 311 P+ + DTAG+R +++EQ V ++ + + E + + D P +D ++ + Sbjct: 272 PLRLLDTAGLRAAE---DAVEQIGVARTQRHLADAELVLAVFDGAAPLTPEDEDLIVRLR 328 Query: 312 NTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSV 371 N +++ NK D D + D + D + IS + G GLDDL ++ Sbjct: 329 NCAAEMIVLCNKED--RDSVLTAADF---------SMLDAPVLVISAQAGTGLDDLRRAI 377 Query: 372 LEINKLWKTRITTSYLNSWLQKTQ 395 EI + + + L + ++T+ Sbjct: 378 AEIVRRMEGDLGDGALPNVERETE 401 Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 55/178 (30%), Positives = 94/178 (52%), Gaps = 3/178 (1%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PNVGKS+L N L+ + A+V + PG TRD + Q +I G+ ++DTAG+ ++ Sbjct: 228 IVGRPNVGKSSLLNALLGMERAIVTDVPGTTRDVIEEQIVIEGIPLRLLDTAGLRAAED- 286 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 ++ + +T+ + +A L+L + D A +TP D + LR +I++ NK D R + Sbjct: 287 AVEQIGVARTQRHLADAELVLAVFDGAAPLTPEDEDLIVRLRNCAAEMIVLCNKED-RDS 345 Query: 127 QRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + LD +V ISA+ G +L I +I ++ + + N +R E+ Sbjct: 346 VLTAADFSMLDAPVLV-ISAQAGTGLDDLRRAIAEIVRRMEGDLGDGALPNVERETEA 402 >gi|18311637|ref|NP_563571.1| tRNA modification GTPase TrmE [Clostridium perfringens str. 13] gi|110799764|ref|YP_697346.1| tRNA modification GTPase TrmE [Clostridium perfringens ATCC 13124] gi|168207742|ref|ZP_02633747.1| tRNA modification GTPase TrmE [Clostridium perfringens E str. JGS1987] gi|168211557|ref|ZP_02637182.1| tRNA modification GTPase TrmE [Clostridium perfringens B str. ATCC 3626] gi|168214843|ref|ZP_02640468.1| tRNA modification GTPase TrmE [Clostridium perfringens CPE str. F4969] gi|169343475|ref|ZP_02864475.1| tRNA modification GTPase TrmE [Clostridium perfringens C str. JGS1495] gi|182626407|ref|ZP_02954160.1| tRNA modification GTPase TrmE [Clostridium perfringens D str. JGS1721] gi|21363002|sp|Q8XH30|MNME_CLOPE RecName: Full=tRNA modification GTPase mnmE gi|123344426|sp|Q0TLZ4|MNME_CLOP1 RecName: Full=tRNA modification GTPase mnmE gi|18146321|dbj|BAB82361.1| probable thiophen / furan oxidation protein [Clostridium perfringens str. 13] gi|110674411|gb|ABG83398.1| tRNA modification GTPase TrmE [Clostridium perfringens ATCC 13124] gi|169298427|gb|EDS80516.1| tRNA modification GTPase TrmE [Clostridium perfringens C str. JGS1495] gi|170660919|gb|EDT13602.1| tRNA modification GTPase TrmE [Clostridium perfringens E str. JGS1987] gi|170710445|gb|EDT22627.1| tRNA modification GTPase TrmE [Clostridium perfringens B str. ATCC 3626] gi|170713713|gb|EDT25895.1| tRNA modification GTPase TrmE [Clostridium perfringens CPE str. F4969] gi|177908281|gb|EDT70834.1| tRNA modification GTPase TrmE [Clostridium perfringens D str. JGS1721] Length = 458 Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 51/170 (30%), Positives = 91/170 (53%), Gaps = 17/170 (10%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K I L + +VG+PNVGKS+L+N LL R + +G TRD + N P+ + D Sbjct: 219 KLIRDGLSMVIVGKPNVGKSSLLNALLNEKRAIVTDIAGTTRDVIEEYINLDGIPVRLVD 278 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ + E + V+KS + + + I++LD + +++D I+D + + + V Sbjct: 279 TAGIRETEDVVEKI---GVEKSKEKINEADLVILMLDTSRELDEEDKEIIDYIKDRKYIV 335 Query: 318 VLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDL 367 +L +K++L + L ++ + NL + +S +TG G+DDL Sbjct: 336 LL---------NKVDLDRKLSSEIVDNLENKIE-----LSAKTGFGIDDL 371 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 52/179 (29%), Positives = 98/179 (54%), Gaps = 6/179 (3%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 ++ IVG PNVGKS+L N L+ +K A+V + G TRD + ++G+ +VDTAGI + Sbjct: 226 SMVIVGKPNVGKSSLLNALLNEKRAIVTDIAGTTRDVIEEYINLDGIPVRLVDTAGIRET 285 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 ++ + K ++++ INEA L++ ++D+ + D I +++ + I++ NK+D Sbjct: 286 EDV-VEKIGVEKSKEKINEADLVILMLDTSRELDEEDKEIIDYIKDR--KYIVLLNKVD- 341 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 + ++ EI + + +E+SA+ G +L S I +F + M+ N + E Sbjct: 342 -LDRKLSSEIVD-NLENKIELSAKTGFGIDDLKSKIKDLFFNGSIDAESVMVTNTRHKE 398 >gi|302390791|ref|YP_003826612.1| tRNA modification GTPase trmE [Thermosediminibacter oceani DSM 16646] gi|302201419|gb|ADL08989.1| tRNA modification GTPase trmE [Thermosediminibacter oceani DSM 16646] Length = 462 Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 54/162 (33%), Positives = 90/162 (55%), Gaps = 7/162 (4%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 I+G PNVGKS+L N L+++K A+V + PG TRD + ING+ IVDTAGI + C Sbjct: 229 ILGRPNVGKSSLLNSLLREKRAIVTDIPGTTRDIIEEYLNINGIPVKIVDTAGIRE--TC 286 Query: 67 SIAKQMNDQTEL-AINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 +++ + L ++ EA L+L ++D+ + D AI ++ K +I+V NK D Sbjct: 287 DAVEKIGVERALESLKEAELVLLMLDASDELREEDRAIMELVKDKF--VIVVLNKTDLP- 343 Query: 126 AQRNFYEIYS-LDFKEIVEISAEHDLGTSELHSVIFKIFKQK 166 + + E+ S K ++ +SA + G EL I++ ++ Sbjct: 344 EKLSVDEVKSAFPGKPLIRVSALREKGIEELKEAIYRAVTEE 385 Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 42/129 (32%), Positives = 77/129 (59%), Gaps = 5/129 (3%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L ++GRPNVGKS+L+N LL R + G TRD + N P++I D Sbjct: 219 KIMREGLSTVILGRPNVGKSSLLNSLLREKRAIVTDIPGTTRDIIEEYLNINGIPVKIVD 278 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ +++E+ V+++++S++ E +++LDA+ ++D I++ V + V Sbjct: 279 TAGIRE---TCDAVEKIGVERALESLKEAELVLLMLDASDELREEDRAIMELVKD--KFV 333 Query: 318 VLALNKWDM 326 ++ LNK D+ Sbjct: 334 IVVLNKTDL 342 >gi|161760545|ref|NP_907463.2| tRNA modification GTPase TrmE [Wolinella succinogenes DSM 1740] gi|205829217|sp|Q7M901|MNME_WOLSU RecName: Full=tRNA modification GTPase mnmE Length = 456 Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 51/135 (37%), Positives = 79/135 (58%), Gaps = 4/135 (2%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 Y +AI+G PNVGKS+L N L+ + A+V + PG TRD + + IVDTAGI + Sbjct: 223 YKLAIIGRPNVGKSSLLNALLLWERAIVSDIPGTTRDTIEESLHLGNHWVRIVDTAGIRE 282 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLR--KKNIPIIIVSNK 120 ++ +I K ++T LA+ E+ ++L L DS ++P D I LR ++N I+++ NK Sbjct: 283 AQD-AIEKIGIERTLLALKESDMVLALFDSSQSLSPEDEQIKELLRAHQENRRILVLFNK 341 Query: 121 MD-TRIAQRNFYEIY 134 D +R Q + E Y Sbjct: 342 SDLSRELQDSELESY 356 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 36/137 (26%), Positives = 77/137 (56%), Gaps = 5/137 (3%) Query: 192 EGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNH 251 +G ++ + ++A++GRPNVGKS+L+N LL + R + G TRD++ S + NH Sbjct: 211 QGSKRRSSLVEGYKLAIIGRPNVGKSSLLNALLLWERAIVSDIPGTTRDTIEESLHLGNH 270 Query: 252 PIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVD--S 309 + I DTAG+R+ +++E+ +++++ +++ + + L D++ +D +I + Sbjct: 271 WVRIVDTAGIREAQ---DAIEKIGIERTLLALKESDMVLALFDSSQSLSPEDEQIKELLR 327 Query: 310 VFNTGHAVVLALNKWDM 326 +++ NK D+ Sbjct: 328 AHQENRRILVLFNKSDL 344 >gi|122700777|emb|CAL87977.1| GTPase [Helicobacter pylori] Length = 170 Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 87/162 (53%), Gaps = 6/162 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A++ + G TRD + ++NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAIISDFAGTTRDINKRKIVLNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 K+D + Y S + IS H+ G S L I + Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAILR 164 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 63/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL + +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAIISDFAGTTRDINKRKIVLNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|168335124|ref|ZP_02693232.1| GTP-binding protein Era [Epulopiscium sp. 'N.t. morphotype B'] Length = 303 Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 60/177 (33%), Positives = 85/177 (48%), Gaps = 5/177 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 I+I+G NVGKSTL NRLV +K+A++ N P TR ++ N +DT GI Sbjct: 10 ISIIGRANVGKSTLMNRLVGEKIAIMSNKPQTTRHQVRTILTTNDFQAVFIDTPGIH-TP 68 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N + K M +NE +ILFLI++ I D I S L+ N + + NK+D + Sbjct: 69 NTELGKFMVKAAHTTLNEVDIILFLIETDTRIGKLDEEIISKLKSVNSAVFLCINKIDGK 128 Query: 125 IAQR--NFYEIY--SLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 Q + E Y S+DF E++ ISA L I K P +MI + Sbjct: 129 DPQEVIDSIECYKDSMDFAEVIPISAYEGTNVDALIHCISKYLPAGPKFFPEDMITD 185 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 59/120 (49%), Gaps = 3/120 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 I+++GR NVGKSTL+NRL+G + ++ TR V + DT G+ P+ Sbjct: 10 ISIIGRANVGKSTLMNRLVGEKIAIMSNKPQTTRHQVRTILTTNDFQAVFIDTPGIHTPN 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 TE L + VK + ++ + + L++ K D I+ + + AV L +NK D Sbjct: 70 --TE-LGKFMVKAAHTTLNEVDIILFLIETDTRIGKLDEEIISKLKSVNSAVFLCINKID 126 >gi|226942147|ref|YP_002797221.1| tRNA modification GTPase TrmE [Laribacter hongkongensis HLHK9] gi|254811488|sp|C1D6H7|MNME_LARHH RecName: Full=tRNA modification GTPase mnmE gi|226717074|gb|ACO76212.1| tRNA modification GTPase trmE [Laribacter hongkongensis HLHK9] Length = 450 Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 50/157 (31%), Positives = 87/157 (55%), Gaps = 5/157 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + +VG PNVGKS+L N L ++A+V + G TRD + Q +++GV +I+DTAG+ + Sbjct: 221 VVLVGQPNVGKSSLMNALAGDEIAIVTDIAGTTRDTVREQIVLDGVPLHIIDTAGLRETT 280 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + ++ + ++T A+ A ++L L+D + G+T D AI + L ++ +P + V NK+D Sbjct: 281 D-TVERIGIERTWQAVERADVVLLLVDGRDGVTAADAAILARLPER-LPRVFVHNKIDLT 338 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 E D +V +SA G L V+ + Sbjct: 339 GETAGVSEE---DGHVVVRLSARGGAGVDALRQVLLE 372 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/96 (31%), Positives = 57/96 (59%), Gaps = 3/96 (3%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + + + +VG+PNVGKS+L+N L G + +G TRD+V P+ I DTA Sbjct: 215 LREGMHVVLVGQPNVGKSSLMNALAGDEIAIVTDIAGTTRDTVREQIVLDGVPLHIIDTA 274 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDA 295 G+R+ T+++E+ ++++ Q+V + ++L+D Sbjct: 275 GLRE---TTDTVERIGIERTWQAVERADVVLLLVDG 307 >gi|292806492|gb|ADE42376.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 54/164 (32%), Positives = 86/164 (52%), Gaps = 6/164 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 K+D + Y S + IS H+ G S L I ++ Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISALIDAILRVL 166 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|217966557|ref|YP_002352063.1| tRNA modification GTPase TrmE [Dictyoglomus turgidum DSM 6724] gi|217335656|gb|ACK41449.1| tRNA modification GTPase TrmE [Dictyoglomus turgidum DSM 6724] Length = 455 Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 55/159 (34%), Positives = 94/159 (59%), Gaps = 6/159 (3%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAII-NGVIFNIVDTAGIA 61 Y + +VG PNVGKS+LFN L+K+ A+V PG TRD + G+ + +G + I DTAG+ Sbjct: 219 YRVILVGRPNVGKSSLFNALMKEDRAIVTPIPGTTRDYIEGELYLSSGHLVKIYDTAGLG 278 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRK-KNIPIIIVSNK 120 K+ + K ++TE + +++LILF++D I+ + + +R +N II+V NK Sbjct: 279 IPKDI-LDKMGMEKTEKILEKSNLILFVVDGSGEISEEEINLFEKIRSYQNKEIILVINK 337 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVI 159 +D + Q+ ++S D ++I +SA+ +G +L I Sbjct: 338 VD--LPQKVELSVFSEDIEKIF-VSAKEGIGIEDLEKAI 373 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/124 (26%), Positives = 68/124 (54%), Gaps = 5/124 (4%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSIS-WNWKNHPIEIFDTAGMRK 263 R+ +VGRPNVGKS+L N L+ +R + G TRD + + H ++I+DTAG+ Sbjct: 220 RVILVGRPNVGKSSLFNALMKEDRAIVTPIPGTTRDYIEGELYLSSGHLVKIYDTAGLGI 279 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFN-TGHAVVLALN 322 P I L++ ++K+ + + + ++D + ++++ + + + + ++L +N Sbjct: 280 PKDI---LDKMGMEKTEKILEKSNLILFVVDGSGEISEEEINLFEKIRSYQNKEIILVIN 336 Query: 323 KWDM 326 K D+ Sbjct: 337 KVDL 340 >gi|122700785|emb|CAL87981.1| GTPase [Helicobacter pylori] Length = 170 Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 54/164 (32%), Positives = 86/164 (52%), Gaps = 6/164 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREIFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 K+D + Y S + IS H+ G S L I ++ Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAILRVL 166 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ +F L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREIFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122702589|emb|CAL88484.1| GTPase [Helicobacter pylori] Length = 170 Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 54/159 (33%), Positives = 83/159 (52%), Gaps = 6/159 (3%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKTALNGYEVELLDTGGMA-- 66 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSNKM 121 K+ ++K++ A + LIL+++D K+ P D I F + K N +V NK+ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKTNPNCFLVINKI 124 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 D + Y S + IS H+ G S L I Sbjct: 125 DNDKEKERAYAFSSFGIPKSFNISVSHNRGISALIDAIL 163 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD + +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKTALNGYEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122701617|emb|CAL88198.1| GTPase [Helicobacter pylori] Length = 170 Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 54/156 (34%), Positives = 84/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++DSK+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDSKS--IPSDEDIKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISAL 158 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 66/121 (54%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D+ +IP + +D+++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDSKSIPSD-EDIKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|308069928|ref|YP_003871533.1| GTP-binding protein [Paenibacillus polymyxa E681] gi|305859207|gb|ADM70995.1| GTP-binding protein, era-like (Bex protein) [Paenibacillus polymyxa E681] Length = 300 Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 51/150 (34%), Positives = 80/150 (53%), Gaps = 11/150 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N ++ +K+A++ + P TR++++G +DT GI + Sbjct: 11 VAIVGRPNVGKSTLMNHVIGQKIAIMSDKPQTTRNKIHGVFTTEDTQIVFLDTPGIHK-R 69 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + MN + E +LFLID+ G+ D I L++ P+I+V NK+D R Sbjct: 70 QSKLGDYMNQTAFNTLGEVEAVLFLIDAAEGLGGGDRFIAEQLKQVKTPVILVLNKID-R 128 Query: 125 IAQ-------RNFYEIYSLDFKEIVEISAE 147 I + ++Y DF EI+ ISA+ Sbjct: 129 IEPEALLPLIEQYRKLY--DFAEIIPISAK 156 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/124 (28%), Positives = 61/124 (49%), Gaps = 5/124 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK-P 264 +A+VGRPNVGKSTL+N ++G + + TR+ + + ++ I DT G+ K Sbjct: 11 VAIVGRPNVGKSTLMNHVIGQKIAIMSDKPQTTRNKIHGVFTTEDTQIVFLDTPGIHKRQ 70 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 S++ + + Q + ++ E + L+DA D I + + V+L LNK Sbjct: 71 SKLGDYMNQ----TAFNTLGEVEAVLFLIDAAEGLGGGDRFIAEQLKQVKTPVILVLNKI 126 Query: 325 DMVS 328 D + Sbjct: 127 DRIE 130 >gi|254456774|ref|ZP_05070202.1| tRNA modification GTPase TrmE [Campylobacterales bacterium GD 1] gi|207085566|gb|EDZ62850.1| tRNA modification GTPase TrmE [Campylobacterales bacterium GD 1] Length = 446 Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 76/132 (57%), Gaps = 7/132 (5%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 + + + ++A+VG+PNVGKS+L+N LL YNR + +G TRD++ H I I D Sbjct: 210 EGLMQGFKVAIVGKPNVGKSSLLNSLLNYNRAIVSEIAGTTRDTIEEQVKIGTHLIRIVD 269 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD---LRIVDSVFNTG 314 TAG+R+ + + +E+ +++S+++++ + + L D + + +D L +VD Sbjct: 270 TAGIREAN---DEIERIGIERSLEAIQESDIVVALFDGSRVLDAEDEQILALVDKHTKNK 326 Query: 315 HAVVLALNKWDM 326 H V+ NK D+ Sbjct: 327 H-VIFVKNKIDL 337 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 45/122 (36%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + +AIVG PNVGKS+L N L+ A+V G TRD + Q I + IVDTAGI + Sbjct: 216 FKVAIVGKPNVGKSSLLNSLLNYNRAIVSEIAGTTRDTIEEQVKIGTHLIRIVDTAGIRE 275 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRK--KNIPIIIVSNK 120 N I + +++ AI E+ +++ L D + D I + + K KN +I V NK Sbjct: 276 A-NDEIERIGIERSLEAIQESDIVVALFDGSRVLDAEDEQILALVDKHTKNKHVIFVKNK 334 Query: 121 MD 122 +D Sbjct: 335 ID 336 >gi|317453535|emb|CBL87877.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 85/162 (52%), Gaps = 6/162 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--VPSDEDIKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 K+D + Y S + IS H+ G S L + + Sbjct: 123 KIDNDKEKERVYAFSSFGMPKSFNISVSHNRGISALIDAVLR 164 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 61/120 (50%), Gaps = 4/120 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +++ ++ +K + S + + ++D +D+++ VF T L +NK D Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSVPSDEDIKLFREVFKTNPNCFLVINKID 125 >gi|300113379|ref|YP_003759954.1| GTP-binding protein Era [Nitrosococcus watsonii C-113] gi|299539316|gb|ADJ27633.1| GTP-binding protein Era [Nitrosococcus watsonii C-113] Length = 307 Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 52/179 (29%), Positives = 92/179 (51%), Gaps = 10/179 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAI+G PNVGKS+L NR++ +K+++ P TR R+ G + G+ VDT G D + Sbjct: 19 IAIIGRPNVGKSSLLNRILDQKISITSRRPQTTRHRILGIKTLPGIQAIYVDTPGFQDKE 78 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + +N + + E LILF+I++ + D I LR+ PI++V NK+D Sbjct: 79 RRLMNRYLNRAIDSTLEEVDLILFVIEA-FQFSKDDEWILQRLRRCAAPIVLVLNKVDRI 137 Query: 125 IAQRNFYEIYS-----LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 I +++ + + ++F I+ +SA + L S + ++ P P+ E+ Sbjct: 138 IDKKSLLPVIATLSKKIEFAAIIPVSAWKGDNVAVLESKVAELL----PAGPMAYPEDQ 192 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/129 (29%), Positives = 59/129 (45%), Gaps = 3/129 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++GRPNVGKS+L+NR+L +T + TR + DT G + Sbjct: 19 IAIIGRPNVGKSSLLNRILDQKISITSRRPQTTRHRILGIKTLPGIQAIYVDTPGFQDKE 78 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 R L + + +++ S I+ + F K D I+ + +VL LNK D Sbjct: 79 R---RLMNRYLNRAIDSTLEEVDLILFVIEAFQFSKDDEWILQRLRRCAAPIVLVLNKVD 135 Query: 326 MVSDKLNLL 334 + DK +LL Sbjct: 136 RIIDKKSLL 144 >gi|292806602|gb|ADE42431.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 54/159 (33%), Positives = 84/159 (52%), Gaps = 6/159 (3%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA-- 66 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSNKM 121 K+ ++K++ A + LIL+++D K+ P D I F + K N +V NK+ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREIFKINPNCFLVINKI 124 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 D + Y +S + IS H+ G S L I Sbjct: 125 DNDKEKEQAYAFFSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ +F L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREIFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|166032680|ref|ZP_02235509.1| hypothetical protein DORFOR_02395 [Dorea formicigenerans ATCC 27755] gi|166027037|gb|EDR45794.1| hypothetical protein DORFOR_02395 [Dorea formicigenerans ATCC 27755] Length = 298 Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 54/163 (33%), Positives = 85/163 (52%), Gaps = 9/163 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + ++G PNVGKSTL N L+ +K+A+ N P TR+R+ + VDT GI K Sbjct: 10 VTLIGRPNVGKSTLMNYLIGQKIAITSNKPQTTRNRIQTVLTTDEGQIVFVDTPGIHKAK 69 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N + + M + E +NE ++L+L++ I + I L++ P+I+V NK+D+ Sbjct: 70 N-KLGEYMVNVAEKTLNEVDVVLWLVEPTTFIGAGEQHIAKQLQRVKTPVILVINKVDSV 128 Query: 125 IAQR------NFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 + + +IY DF +IV +SA T EL VI K Sbjct: 129 KREEILPAIAAYKDIY--DFADIVPVSARSGDNTDELLRVIMK 169 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 45/181 (24%), Positives = 81/181 (44%), Gaps = 16/181 (8%) Query: 197 VKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIF 256 +KN K + ++GRPNVGKSTL+N L+G +T ++ TR+ + I Sbjct: 1 MKNDFKSGFVTLIGRPNVGKSTLMNYLIGQKIAITSNKPQTTRNRIQTVLTTDEGQIVFV 60 Query: 257 DTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHA 316 DT G+ K L + V + +++ + + L++ T + I + Sbjct: 61 DTPGIHKAKN---KLGEYMVNVAEKTLNEVDVVLWLVEPTTFIGAGEQHIAKQLQRVKTP 117 Query: 317 VVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIY----INTISGRTGEGLDDLMVSVL 372 V+L +NK D V R + + + DIY I +S R+G+ D+L+ ++ Sbjct: 118 VILVINKVDSVK---------REEILPAIAAYKDIYDFADIVPVSARSGDNTDELLRVIM 168 Query: 373 E 373 + Sbjct: 169 K 169 >gi|292806534|gb|ADE42397.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 85/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREIFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y +S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFFSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 85/172 (49%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ +F T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREIFKTNPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D ++S L++N+ Sbjct: 125 D--NDK----EKERAYAFFSFGMPKSFNISVSHNRGISALIDAILSALDLNQ 170 >gi|261253899|ref|ZP_05946472.1| GTP-binding protein Era [Vibrio orientalis CIP 102891] gi|260937290|gb|EEX93279.1| GTP-binding protein Era [Vibrio orientalis CIP 102891] Length = 325 Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 51/150 (34%), Positives = 83/150 (55%), Gaps = 8/150 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL NR++ +K+++ P TR R+ G VDT G+ + Sbjct: 34 VAIVGRPNVGKSTLLNRILGQKISITSRKPQTTRHRIMGVDTEGDYQAIYVDTPGLHIEE 93 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN ++++ +L+ FL+D T D + + L+K N P+++ NK+D Sbjct: 94 KRAINRLMNRAANSSLSDVNLVFFLVDG-THWTADDEMVLTKLQKSNFPVVLCVNKVDV- 151 Query: 125 IAQRN-----FYEIYS-LDFKEIVEISAEH 148 + RN E+ S +DF ++V ISA+H Sbjct: 152 VQDRNDVMMHMQEMSSKMDFVDVVPISAKH 181 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 80/169 (47%), Gaps = 9/169 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMR-KP 264 +A+VGRPNVGKSTL+NR+LG +T + TR + ++ DT G+ + Sbjct: 34 VAIVGRPNVGKSTLLNRILGQKISITSRKPQTTRHRIMGVDTEGDYQAIYVDTPGLHIEE 93 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 R L + S+ V L+D T + D ++ + + VVL +NK Sbjct: 94 KRAINRLMNRAANSSLSDVNLV---FFLVDGT-HWTADDEMVLTKLQKSNFPVVLCVNKV 149 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 D+V D+ +++ ++ + K + + + IS + G+ +D L V E Sbjct: 150 DVVQDRNDVMMHMQEMSSK----MDFVDVVPISAKHGKNIDVLRKHVRE 194 >gi|88809840|ref|ZP_01125346.1| tRNA modification GTPase [Synechococcus sp. WH 7805] gi|88786224|gb|EAR17385.1| tRNA modification GTPase [Synechococcus sp. WH 7805] Length = 460 Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 49/125 (39%), Positives = 73/125 (58%), Gaps = 16/125 (12%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI---A 61 +A+VG PNVGKS+L NRL +++ A+V + PG TRD L + ++ GV ++DTAGI Sbjct: 229 VALVGRPNVGKSSLLNRLSRRERAIVTDLPGTTRDLLESEIVLEGVPITLLDTAGIRATT 288 Query: 62 DG-KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKK---NIPIIIV 117 D + IA+ + A+ A L+L L D G TP D A LR++ +P ++V Sbjct: 289 DAVEQLGIARSHD-----ALASADLVLLLFDLSVGWTPDDEA----LRQRVPDAVPHLLV 339 Query: 118 SNKMD 122 NK+D Sbjct: 340 GNKVD 344 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 46/140 (32%), Positives = 76/140 (54%), Gaps = 13/140 (9%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + LR+A+VGRPNVGKS+L+NRL R + G TRD + + PI + DTA Sbjct: 223 LRQGLRVALVGRPNVGKSSLLNRLSRRERAIVTDLPGTTRDLLESEIVLEGVPITLLDTA 282 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD----LRIVDSVFNTGH 315 G+R T+++EQ + +S ++ + + ++L D ++ + D R+ D+V + Sbjct: 283 GIRA---TTDAVEQLGIARSHDALASADLVLLLFDLSVGWTPDDEALRQRVPDAVPH--- 336 Query: 316 AVVLALNKWDMV-SDKLNLL 334 +L NK D+ SD L L Sbjct: 337 --LLVGNKVDLAGSDALARL 354 >gi|282889533|ref|ZP_06298075.1| hypothetical protein pah_c001o004 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281500546|gb|EFB42823.1| hypothetical protein pah_c001o004 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 476 Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 61/170 (35%), Positives = 89/170 (52%), Gaps = 16/170 (9%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 ++ ++G PNVGKS+L N L+ K A+V G TRD L +NG+ F ++DTAGI D Sbjct: 246 SLCLIGCPNVGKSSLMNALLGKDRAIVSAIAGTTRDILEDHLKLNGLNFRLLDTAGIRDS 305 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIP---IIIVSNK 120 A+ + ++ AI EA LILF++DS G+ DH L + IP I V NK Sbjct: 306 DEIVEAEGIR-RSRQAIQEADLILFVLDSSRGLQADDH-----LLMQQIPHEKTIGVWNK 359 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK-IFKQKYPN 169 +D + E+ L F + +SA+ G LH I + I+K P+ Sbjct: 360 IDIQKP-----EMTPLPFSTVC-VSAQERQGLDTLHETIDQVIWKNGMPD 403 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 29/98 (29%), Positives = 55/98 (56%), Gaps = 3/98 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 + ++G PNVGKS+L+N LLG +R + + +G TRD + + DTAG+R Sbjct: 247 LCLIGCPNVGKSSLMNALLGKDRAIVSAIAGTTRDILEDHLKLNGLNFRLLDTAGIRDSD 306 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 I E+ + +++S Q+++ + + +LD++ + D Sbjct: 307 EIVEA---EGIRRSRQAIQEADLILFVLDSSRGLQADD 341 >gi|225182107|ref|ZP_03735535.1| GTP-binding protein Era [Dethiobacter alkaliphilus AHT 1] gi|225167194|gb|EEG76017.1| GTP-binding protein Era [Dethiobacter alkaliphilus AHT 1] Length = 302 Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 58/178 (32%), Positives = 89/178 (50%), Gaps = 5/178 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA++G PNVGKSTL N V +KMA++ + P TR+++ G + +DT GI + Sbjct: 13 IALIGRPNVGKSTLMNAFVGEKMAIISDKPQTTRNQIRGILTADDYQAVFLDTPGIHKPQ 72 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + ++M + E LILFL+D+ AG D I L P+I+V+NK D Sbjct: 73 H-KLGEKMVQVAVRTLQEVDLILFLVDAAAGPGAGDDYIIRQLSDVETPVILVANKADEA 131 Query: 125 --IAQRNFYEIY--SLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 A +N E Y FK + +SA + EL S+I + +P +MI + Sbjct: 132 GMEAAQNVLEHYLPLYPFKAALPVSAITGINQEELLSLIVDSLPEGPQYYPEDMITDQ 189 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/167 (25%), Positives = 78/167 (46%), Gaps = 5/167 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++GRPNVGKSTL+N +G + + TR+ + ++ DT G+ KP Sbjct: 13 IALIGRPNVGKSTLMNAFVGEKMAIISDKPQTTRNQIRGILTADDYQAVFLDTPGIHKPQ 72 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L +K V+ ++++++ + + L+DA D I+ + + V+L NK D Sbjct: 73 H---KLGEKMVQVAVRTLQEVDLILFLVDAAAGPGAGDDYIIRQLSDVETPVILVANKAD 129 Query: 326 MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVL 372 + Q++ + P + ++ I+G E L L+V L Sbjct: 130 EAG--MEAAQNVLEHYLPLYPFKAALPVSAITGINQEELLSLIVDSL 174 >gi|122701329|emb|CAL88054.1| GTPase [Helicobacter pylori] Length = 170 Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 54/164 (32%), Positives = 86/164 (52%), Gaps = 6/164 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 K+D + Y S + IS H+ G S L I ++ Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAILRVL 166 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|331702698|ref|YP_004399657.1| tRNA modification GTPase mnmE [Lactobacillus buchneri NRRL B-30929] gi|329130041|gb|AEB74594.1| tRNA modification GTPase mnmE [Lactobacillus buchneri NRRL B-30929] Length = 464 Score = 80.1 bits (196), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 56/159 (35%), Positives = 89/159 (55%), Gaps = 5/159 (3%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 +I+G PNVGKS+L N L+ + A+V + PG TRD L ++GV +VDTAGI D + Sbjct: 229 SIIGRPNVGKSSLLNNLLHEDKAIVTDVPGTTRDVLEEYVNVHGVPLKLVDTAGIRDTTD 288 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 + K D++ AIN A L+L ++++ +T D + S + K II+ + T+I Sbjct: 289 -KVEKIGVDRSRKAINSADLVLLVLNASEPLTDEDKKLLSATQDKQRIIILNKTDLPTKI 347 Query: 126 AQRNFYEIYSL-DFKEIVEISAEHDLGTSELHSVIFKIF 163 Q +I SL D + ++ SA G ++L +I K+F Sbjct: 348 DQD---QIKSLADGQNVISTSAIKADGLTQLEELIAKMF 383 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 37/129 (28%), Positives = 75/129 (58%), Gaps = 5/129 (3%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L +++GRPNVGKS+L+N LL ++ + G TRD + N P+++ D Sbjct: 220 KILREGLATSIIGRPNVGKSSLLNNLLHEDKAIVTDVPGTTRDVLEEYVNVHGVPLKLVD 279 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R T+ +E+ V +S +++ + + +++L+A+ P +D +++ + + + Sbjct: 280 TAGIRDT---TDKVEKIGVDRSRKAINSADLVLLVLNASEPLTDEDKKLLSATQDKQRII 336 Query: 318 VLALNKWDM 326 + LNK D+ Sbjct: 337 I--LNKTDL 343 >gi|260685218|ref|YP_003216503.1| tRNA modification GTPase TrmE [Clostridium difficile CD196] gi|260688877|ref|YP_003220011.1| tRNA modification GTPase TrmE [Clostridium difficile R20291] gi|260211381|emb|CBA67036.1| putative tRNA modification GTPase [Clostridium difficile CD196] gi|260214894|emb|CBE07700.1| putative tRNA modification GTPase [Clostridium difficile R20291] Length = 462 Score = 80.1 bits (196), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 52/164 (31%), Positives = 89/164 (54%), Gaps = 9/164 (5%) Query: 167 YPNHPLEMI--ENNKRNEESPKENITS--EGKSSVKNISKPLRIAVVGRPNVGKSTLINR 222 YP +E I + K + K+ I + S K + + L+ +VG+PNVGKS+L+N Sbjct: 184 YPEEDIEHITYQTLKEKTDELKKEIKKLYDTAESGKILREGLKTVIVGKPNVGKSSLLNS 243 Query: 223 LLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQS 282 +LG NR + G TRD + N K P++I DTAG+R I E + V+KS +S Sbjct: 244 ILGENRAIVTDIPGTTRDVIEEFVNIKGIPLKIVDTAGIRDTDDIVEKI---GVEKSKES 300 Query: 283 VRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 + + +++LDA+ ++D+ I++ + + ++ LNK D+ Sbjct: 301 FTSADLIVMVLDASRKLSEEDIEILEKLKD--KQTIVLLNKNDL 342 Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 51/181 (28%), Positives = 91/181 (50%), Gaps = 4/181 (2%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PNVGKS+L N ++ + A+V + PG TRD + I G+ IVDTAGI D + Sbjct: 229 IVGKPNVGKSSLLNSILGENRAIVTDIPGTTRDVIEEFVNIKGIPLKIVDTAGIRDTDDI 288 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 + K ++++ + A LI+ ++D+ ++ D I L+ K +++ N + I Sbjct: 289 -VEKIGVEKSKESFTSADLIVMVLDASRKLSEEDIEILEKLKDKQTIVLLNKNDLKQEIE 347 Query: 127 QRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK-IFKQKYPNHPLEMIENNKRNEESP 185 + + ++ I++ISA G EL I ++K N+ ++ N++ + Sbjct: 348 EEKI--LKYVENNSIIKISALQQEGIEELQDKIESMVYKGSIKNNSSLVVTNSRHKDALS 405 Query: 186 K 186 K Sbjct: 406 K 406 >gi|254977337|ref|ZP_05273809.1| tRNA modification GTPase TrmE [Clostridium difficile QCD-66c26] gi|255094668|ref|ZP_05324146.1| tRNA modification GTPase TrmE [Clostridium difficile CIP 107932] gi|255316421|ref|ZP_05358004.1| tRNA modification GTPase TrmE [Clostridium difficile QCD-76w55] gi|255519081|ref|ZP_05386757.1| tRNA modification GTPase TrmE [Clostridium difficile QCD-97b34] gi|255652264|ref|ZP_05399166.1| tRNA modification GTPase TrmE [Clostridium difficile QCD-37x79] gi|306521979|ref|ZP_07408326.1| tRNA modification GTPase TrmE [Clostridium difficile QCD-32g58] Length = 459 Score = 80.1 bits (196), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 52/164 (31%), Positives = 89/164 (54%), Gaps = 9/164 (5%) Query: 167 YPNHPLEMI--ENNKRNEESPKENITS--EGKSSVKNISKPLRIAVVGRPNVGKSTLINR 222 YP +E I + K + K+ I + S K + + L+ +VG+PNVGKS+L+N Sbjct: 181 YPEEDIEHITYQTLKEKTDELKKEIKKLYDTAESGKILREGLKTVIVGKPNVGKSSLLNS 240 Query: 223 LLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQS 282 +LG NR + G TRD + N K P++I DTAG+R I E + V+KS +S Sbjct: 241 ILGENRAIVTDIPGTTRDVIEEFVNIKGIPLKIVDTAGIRDTDDIVEKI---GVEKSKES 297 Query: 283 VRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 + + +++LDA+ ++D+ I++ + + ++ LNK D+ Sbjct: 298 FTSADLIVMVLDASRKLSEEDIEILEKLKD--KQTIVLLNKNDL 339 Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 47/153 (30%), Positives = 79/153 (51%), Gaps = 3/153 (1%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PNVGKS+L N ++ + A+V + PG TRD + I G+ IVDTAGI D + Sbjct: 226 IVGKPNVGKSSLLNSILGENRAIVTDIPGTTRDVIEEFVNIKGIPLKIVDTAGIRDTDDI 285 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 + K ++++ + A LI+ ++D+ ++ D I L+ K +++ N + I Sbjct: 286 -VEKIGVEKSKESFTSADLIVMVLDASRKLSEEDIEILEKLKDKQTIVLLNKNDLKQEIE 344 Query: 127 QRNFYEIYSLDFKEIVEISAEHDLGTSELHSVI 159 + + ++ I++ISA G EL I Sbjct: 345 EEKI--LKYVENNSIIKISALQQEGIEELQDKI 375 >gi|152990630|ref|YP_001356352.1| tRNA modification GTPase TrmE [Nitratiruptor sp. SB155-2] gi|172048731|sp|A6Q3D6|MNME_NITSB RecName: Full=tRNA modification GTPase mnmE gi|151422491|dbj|BAF69995.1| tRNA modification GTPase TrmE [Nitratiruptor sp. SB155-2] Length = 448 Score = 80.1 bits (196), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 88/165 (53%), Gaps = 8/165 (4%) Query: 164 KQKYPNHPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRL 223 ++ P E IE + + + I + K I + ++A++G+PN GKS+L+N L Sbjct: 180 EEDLPKDLQEQIEQQLNDIQEELQKIVASSKRRAGLI-EGFKVAIIGKPNTGKSSLLNAL 238 Query: 224 LGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSV 283 L Y R + +G TRD++ S H + DTAG+R+ +++E+ +++S+Q++ Sbjct: 239 LDYERAIVSDIAGTTRDTIEESVRIGTHLVRFVDTAGIREAH---DTIEKIGIERSIQAI 295 Query: 284 RTCETTIVLLDATIPFEKQD---LRIVDSVFNTGHAVVLALNKWD 325 + I + DA+ P + +D L +++S + +V+A NK D Sbjct: 296 EESDIVIAMFDASKPLDAEDKKILELIESYKDQKEFIVVA-NKVD 339 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 38/122 (31%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + +AI+G PN GKS+L N L+ + A+V + G TRD + I + VDTAGI + Sbjct: 219 FKVAIIGKPNTGKSSLLNALLDYERAIVSDIAGTTRDTIEESVRIGTHLVRFVDTAGIRE 278 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLR--KKNIPIIIVSNK 120 + +I K +++ AI E+ +++ + D+ + D I + K I+V+NK Sbjct: 279 AHD-TIEKIGIERSIQAIEESDIVIAMFDASKPLDAEDKKILELIESYKDQKEFIVVANK 337 Query: 121 MD 122 +D Sbjct: 338 VD 339 >gi|116513181|ref|YP_812088.1| tRNA modification GTPase TrmE [Lactococcus lactis subsp. cremoris SK11] gi|123025076|sp|Q02VP7|MNME_LACLS RecName: Full=tRNA modification GTPase mnmE gi|116108835|gb|ABJ73975.1| tRNA modification GTPase trmE [Lactococcus lactis subsp. cremoris SK11] Length = 455 Score = 80.1 bits (196), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 52/162 (32%), Positives = 95/162 (58%), Gaps = 11/162 (6%) Query: 187 ENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISW 246 EN+ S K K + + L+ A++GRPNVGKS+L+N+LL + + +G TRD ++ Sbjct: 207 ENLLSTAKRG-KILREGLKTAIIGRPNVGKSSLLNQLLREEKAIVTDIAGTTRDVITEFA 265 Query: 247 NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRI 306 N P+E+ DTAG+R+ + E++ V++S +++ + +++LDA++ +DL + Sbjct: 266 NIGGVPLELVDTAGIRETDDLVEAI---GVERSKKALAEADLVLLVLDASLELTDKDLEL 322 Query: 307 VDSVFNTGHAVVLALNKWDMVSDKLNLLQD----LRTKAIKN 344 ++ N V+ LNK D+ +KL++ Q +R A+KN Sbjct: 323 LELSKNANRIVL--LNKTDL-PEKLDINQISGDFIRISALKN 361 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 43/117 (36%), Positives = 70/117 (59%), Gaps = 3/117 (2%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N+L++++ A+V + G TRD + A I GV +VDTAGI + + Sbjct: 226 AIIGRPNVGKSSLLNQLLREEKAIVTDIAGTTRDVITEFANIGGVPLELVDTAGIRETDD 285 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 A + ++++ A+ EA L+L ++D+ +T D + KN I++ NK D Sbjct: 286 LVEAIGV-ERSKKALAEADLVLLVLDASLELTDKDLELLEL--SKNANRIVLLNKTD 339 >gi|261405616|ref|YP_003241857.1| GTP-binding protein Era [Paenibacillus sp. Y412MC10] gi|261282079|gb|ACX64050.1| GTP-binding protein Era [Paenibacillus sp. Y412MC10] Length = 300 Score = 80.1 bits (196), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 63/186 (33%), Positives = 96/186 (51%), Gaps = 19/186 (10%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKSTL N+++ +K+A++ + P TR++++G +DT GI + Sbjct: 11 VAIIGRPNVGKSTLMNQVIGQKIAIMSDKPQTTRNKIHGVYTTPDSQVVFLDTPGIHK-R 69 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD-- 122 + MN + E LFL+D+ GI D I L+K PII+V NK+D Sbjct: 70 QSKLGDYMNQTALSTLGEVEAALFLVDASEGIGGGDRYIAEQLQKIKTPIILVMNKIDKI 129 Query: 123 TRIAQRNFYEIYS--LDFKEIVEISAEHDLGTSELHSVIFKIFK------QKYP-----N 169 A E Y DF EIV ISA+ LG S +++++ +I K Q YP + Sbjct: 130 EPPALLPLIEQYRKLHDFAEIVPISAK--LG-SNVNTLLEQIQKYLPPGPQYYPEDQVTD 186 Query: 170 HPLEMI 175 HP + + Sbjct: 187 HPEQFV 192 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 31/124 (25%), Positives = 63/124 (50%), Gaps = 5/124 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK-P 264 +A++GRPNVGKSTL+N+++G + + TR+ + + + + DT G+ K Sbjct: 11 VAIIGRPNVGKSTLMNQVIGQKIAIMSDKPQTTRNKIHGVYTTPDSQVVFLDTPGIHKRQ 70 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 S++ + + Q ++ ++ E + L+DA+ D I + + ++L +NK Sbjct: 71 SKLGDYMNQ----TALSTLGEVEAALFLVDASEGIGGGDRYIAEQLQKIKTPIILVMNKI 126 Query: 325 DMVS 328 D + Sbjct: 127 DKIE 130 >gi|307298711|ref|ZP_07578514.1| tRNA modification GTPase TrmE [Thermotogales bacterium mesG1.Ag.4.2] gi|306915876|gb|EFN46260.1| tRNA modification GTPase TrmE [Thermotogales bacterium mesG1.Ag.4.2] Length = 439 Score = 80.1 bits (196), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 54/156 (34%), Positives = 80/156 (51%), Gaps = 13/156 (8%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AIVG NVGKSTL N L+K+ A+V PG TRD + I GV+F ++DTAGI +N Sbjct: 217 AIVGETNVGKSTLLNALLKRDRAIVSEIPGTTRDTIEEDLNIGGVLFRVIDTAGIRQAEN 276 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 I +++ AI EA L++ L D P + LR K +I+ +NK D R Sbjct: 277 -EIEVLGIERSLKAIEEAELVILLRDPH---NPESKDLEEELRNKGKRLIVAANKSDIRK 332 Query: 126 AQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 +++ +++ ISA G +L ++ K Sbjct: 333 VEQHHFDVV---------ISARTGEGLKDLEKLMLK 359 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 55/168 (32%), Positives = 84/168 (50%), Gaps = 24/168 (14%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 IS+ ++ A+VG NVGKSTL+N LL +R + G TRD++ N + DTA Sbjct: 210 ISQGIKTAIVGETNVGKSTLLNALLKRDRAIVSEIPGTTRDTIEEDLNIGGVLFRVIDTA 269 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R+ E L +++S++++ E I+L D P E +DL + + N G +++ Sbjct: 270 GIRQAENEIEVL---GIERSLKAIEEAELVILLRDPHNP-ESKDLE--EELRNKGKRLIV 323 Query: 320 ALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDL 367 A NK D I+ + Q + IS RTGEGL DL Sbjct: 324 AANKSD----------------IRKVEQ--HHFDVVISARTGEGLKDL 353 >gi|122702485|emb|CAL88433.1| GTPase [Helicobacter pylori] Length = 170 Score = 80.1 bits (196), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 54/160 (33%), Positives = 84/160 (52%), Gaps = 6/160 (3%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA-- 66 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSNKM 121 K+ ++K++ A + LIL+++D K+ P D I F + K N +V NK+ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKTNPNCFLVINKI 124 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 D + Y S + IS H+ G S L I + Sbjct: 125 DNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAILR 164 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|297545652|ref|YP_003677954.1| tRNA modification GTPase TrmE [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296843427|gb|ADH61943.1| tRNA modification GTPase TrmE [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 462 Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 59/181 (32%), Positives = 98/181 (54%), Gaps = 7/181 (3%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+K+ A+V + PG TRD + + G+ ++DTAGI D Sbjct: 228 AIIGKPNVGKSSLLNALLKENRAIVTDIPGTTRDIIEEYINVKGIPIKLIDTAGIRDTDE 287 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD--T 123 + K ++++ + EA LILF++D+ ++ D+ I L +KN II V NK+D Sbjct: 288 L-VEKIGVERSKEVLAEADLILFVLDASRELSEEDYQIFDILTEKN--IIFVLNKIDLPK 344 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 +I + + I+E+S +G +L + I+ + + N E I N R++E Sbjct: 345 KIDESKLKSLIKDGI--IIEVSTVERIGLEKLENAIYDLVFRGDINLREEEIIINSRHKE 402 Query: 184 S 184 + Sbjct: 403 A 403 Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 53/165 (32%), Positives = 88/165 (53%), Gaps = 12/165 (7%) Query: 169 NHPLEMIENNKRNE--ESPKENITSEGK-----SSVKNISKPLRIAVVGRPNVGKSTLIN 221 + P E +E +R E E+ KE + K S + I + L+ A++G+PNVGKS+L+N Sbjct: 183 DFPEEDVEELERKEMLETAKEIVEDIDKLIVSSESGRIIREGLKTAIIGKPNVGKSSLLN 242 Query: 222 RLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQ 281 LL NR + G TRD + N K PI++ DTAG+R + E + V++S + Sbjct: 243 ALLKENRAIVTDIPGTTRDIIEEYINVKGIPIKLIDTAGIRDTDELVEKI---GVERSKE 299 Query: 282 SVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 + + + +LDA+ ++D +I D + T ++ LNK D+ Sbjct: 300 VLAEADLILFVLDASRELSEEDYQIFDIL--TEKNIIFVLNKIDL 342 >gi|251778655|ref|ZP_04821575.1| tRNA modification GTPase TrmE [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082970|gb|EES48860.1| tRNA modification GTPase TrmE [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 456 Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 52/159 (32%), Positives = 89/159 (55%), Gaps = 9/159 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + I+G PNVGKS+L N L+K+K A+V + PG TRD + I+G+ I DTAGI + + Sbjct: 228 VVIIGKPNVGKSSLLNVLLKEKRAIVTDIPGTTRDIIEEYLNIDGIPIKITDTAGIRETE 287 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + ++ K +++ I EA LI+ ++DS + D I + ++ KN +++ +D + Sbjct: 288 D-TVEKIGVERSREKIEEADLIILILDSSRDLEEEDKEIINTIKDKNHIVLLNKTDLDRK 346 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 IA +D ++ISA+ G EL + I ++F Sbjct: 347 IAD--------IDLDNQIKISAKTGYGIEELKNKIKELF 377 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/178 (30%), Positives = 95/178 (53%), Gaps = 26/178 (14%) Query: 193 GKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHP 252 G K I L + ++G+PNVGKS+L+N LL R + G TRD + N P Sbjct: 215 GADEGKIIRDGLNVVIIGKPNVGKSSLLNVLLKEKRAIVTDIPGTTRDIIEEYLNIDGIP 274 Query: 253 IEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFN 312 I+I DTAG+R+ +++E+ V++S + + + I++LD++ E++D I++++ + Sbjct: 275 IKITDTAGIRETE---DTVEKIGVERSREKIEEADLIILILDSSRDLEEEDKEIINTIKD 331 Query: 313 TGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINT---ISGRTGEGLDDL 367 H V+ LNK D+ D+ +I DI ++ IS +TG G+++L Sbjct: 332 KNHIVL--LNKTDL--DR----------------KIADIDLDNQIKISAKTGYGIEEL 369 >gi|239624142|ref|ZP_04667173.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239520528|gb|EEQ60394.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 459 Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 51/185 (27%), Positives = 97/185 (52%), Gaps = 4/185 (2%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 I+G PN GKS+L N L+ ++ A+V G TRD L + G+ N+VDTAGI D ++ Sbjct: 227 ILGKPNAGKSSLMNVLLGEERAIVTEIAGTTRDTLEEHIYLQGISLNVVDTAGIRDTEDV 286 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 + K D+ A +A LI+F++D + D I F+R + I++ + ++ + Sbjct: 287 -VEKIGVDRARRAAGDADLIIFVVDGSRPLDESDREIMDFIRGRKSIILLNKSDLELVVG 345 Query: 127 QRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEESPK 186 + E+ + ++++ +SA+ + G EL I ++F ++ N R++E+ + Sbjct: 346 KE---ELEGMSGQKVIPVSAKEEQGIEELEQEIKRLFYHGELKFNDQVYITNVRHKEALE 402 Query: 187 ENITS 191 + + S Sbjct: 403 QALRS 407 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 35/127 (27%), Positives = 69/127 (54%), Gaps = 5/127 (3%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 +++ ++ ++G+PN GKS+L+N LLG R + +G TRD++ + + + DTA Sbjct: 219 MTEGVKTVILGKPNAGKSSLMNVLLGEERAIVTEIAGTTRDTLEEHIYLQGISLNVVDTA 278 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R + E + V ++ ++ + I ++D + P ++ D I+D F G ++ Sbjct: 279 GIRDTEDVVEKI---GVDRARRAAGDADLIIFVVDGSRPLDESDREIMD--FIRGRKSII 333 Query: 320 ALNKWDM 326 LNK D+ Sbjct: 334 LLNKSDL 340 >gi|315453615|ref|YP_004073885.1| putative thiophene and furan oxidation protein [Helicobacter felis ATCC 49179] gi|315132667|emb|CBY83295.1| putative thiophene and furan oxidation protein [Helicobacter felis ATCC 49179] Length = 457 Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 42/135 (31%), Positives = 76/135 (56%), Gaps = 8/135 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 + +VG+PNVGKS+L+N LL +R L S +G TRD++ + +++ DTAG+R Sbjct: 221 LGLVGKPNVGKSSLLNALLLKDRALVSSIAGTTRDTIEEYLELQGISLKLIDTAGIRTAQ 280 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +++EQ + KS++S++ + + + D + P E QD +++ + +++ NK D Sbjct: 281 ---DAIEQLGIAKSLKSLQESDIVLAIFDLSTPLESQDRQVIALLLEHAKNIIVVFNKSD 337 Query: 326 M-----VSDKLNLLQ 335 + LNLLQ Sbjct: 338 CPAQLDTQEVLNLLQ 352 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 43/138 (31%), Positives = 71/138 (51%), Gaps = 10/138 (7%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 Y + +VG PNVGKS+L N L+ K A+V + G TRD + + G+ ++DTAGI Sbjct: 219 YCLGLVGKPNVGKSSLLNALLLKDRALVSSIAGTTRDTIEEYLELQGISLKLIDTAGIRT 278 Query: 63 GKNC----SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVS 118 ++ IAK + ++ E+ ++L + D + D + + L + II+V Sbjct: 279 AQDAIEQLGIAKSLK-----SLQESDIVLAIFDLSTPLESQDRQVIALLLEHAKNIIVVF 333 Query: 119 NKMDTRIAQRNFYEIYSL 136 NK D AQ + E+ +L Sbjct: 334 NKSDCP-AQLDTQEVLNL 350 >gi|188590674|ref|YP_001922717.1| tRNA modification GTPase TrmE [Clostridium botulinum E3 str. Alaska E43] gi|188500955|gb|ACD54091.1| tRNA modification GTPase TrmE [Clostridium botulinum E3 str. Alaska E43] Length = 456 Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 52/159 (32%), Positives = 89/159 (55%), Gaps = 9/159 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + I+G PNVGKS+L N L+K+K A+V + PG TRD + I+G+ I DTAGI + + Sbjct: 228 VVIIGKPNVGKSSLLNVLLKEKRAIVTDIPGTTRDIIEEYLNIDGIPIKITDTAGIRETE 287 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + ++ K +++ I EA LI+ ++DS + D I + ++ KN +++ +D + Sbjct: 288 D-TVEKIGVERSREKIEEADLIILILDSSRDLEEEDKEIINTIKDKNHIVLLNKTDLDRK 346 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 IA +D ++ISA+ G EL + I ++F Sbjct: 347 IAD--------IDLDNQIKISAKTGYGIEELKNKIKELF 377 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/178 (30%), Positives = 95/178 (53%), Gaps = 26/178 (14%) Query: 193 GKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHP 252 G K I L + ++G+PNVGKS+L+N LL R + G TRD + N P Sbjct: 215 GADEGKIIRDGLNVVIIGKPNVGKSSLLNVLLKEKRAIVTDIPGTTRDIIEEYLNIDGIP 274 Query: 253 IEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFN 312 I+I DTAG+R+ +++E+ V++S + + + I++LD++ E++D I++++ + Sbjct: 275 IKITDTAGIRETE---DTVEKIGVERSREKIEEADLIILILDSSRDLEEEDKEIINTIKD 331 Query: 313 TGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINT---ISGRTGEGLDDL 367 H V+ LNK D+ D+ +I DI ++ IS +TG G+++L Sbjct: 332 KNHIVL--LNKTDL--DR----------------KIADIDLDNQIKISAKTGYGIEEL 369 >gi|122701431|emb|CAL88105.1| GTPase [Helicobacter pylori] gi|122701437|emb|CAL88108.1| GTPase [Helicobacter pylori] Length = 170 Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 53/164 (32%), Positives = 86/164 (52%), Gaps = 6/164 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + ++NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIVLNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYIVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 K+D + Y S + IS H+ G S L I + Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSVL 166 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 84/172 (48%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIVLNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYIVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D ++SVL +N+ Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSVLNLNQ 170 >gi|122701597|emb|CAL88188.1| GTPase [Helicobacter pylori] Length = 170 Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 53/164 (32%), Positives = 85/164 (51%), Gaps = 6/164 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 K+D + Y S + IS H+ G S L I + Sbjct: 123 KIDNDKEKERVYAFSSFGMPKSFNISVSHNRGISALIDAILSVL 166 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 51/171 (29%), Positives = 84/171 (49%), Gaps = 12/171 (7%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEIN 375 D +DK + R A + I+ R L D ++SVL +N Sbjct: 125 D--NDK----EKERVYAFSSFGMPKSFNISVSHNRGISALIDAILSVLNLN 169 >gi|289579530|ref|YP_003478157.1| tRNA modification GTPase TrmE [Thermoanaerobacter italicus Ab9] gi|289529243|gb|ADD03595.1| tRNA modification GTPase TrmE [Thermoanaerobacter italicus Ab9] Length = 460 Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 59/181 (32%), Positives = 98/181 (54%), Gaps = 7/181 (3%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+K+ A+V + PG TRD + + G+ ++DTAGI D Sbjct: 226 AIIGKPNVGKSSLLNALLKENRAIVTDIPGTTRDIIEEYINVKGIPIKLIDTAGIRDTDE 285 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD--T 123 + K ++++ + EA LILF++D+ ++ D+ I L +KN II V NK+D Sbjct: 286 L-VEKIGVERSKEVLAEADLILFVLDASRELSEEDYQIFDILTEKN--IIFVLNKIDLPK 342 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 +I + + I+E+S +G +L + I+ + + N E I N R++E Sbjct: 343 KIDESKLKSLIKDGI--IIEVSTVERIGLEKLENAIYDLVFRGDINLREEEIIINSRHKE 400 Query: 184 S 184 + Sbjct: 401 A 401 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 53/165 (32%), Positives = 88/165 (53%), Gaps = 12/165 (7%) Query: 169 NHPLEMIENNKRNE--ESPKENITSEGK-----SSVKNISKPLRIAVVGRPNVGKSTLIN 221 + P E +E +R E E+ KE + K S + I + L+ A++G+PNVGKS+L+N Sbjct: 181 DFPEEDVEELERKEMLETAKEIVEDIDKLIVSSESGRIIREGLKTAIIGKPNVGKSSLLN 240 Query: 222 RLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQ 281 LL NR + G TRD + N K PI++ DTAG+R + E + V++S + Sbjct: 241 ALLKENRAIVTDIPGTTRDIIEEYINVKGIPIKLIDTAGIRDTDELVEKI---GVERSKE 297 Query: 282 SVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 + + + +LDA+ ++D +I D + T ++ LNK D+ Sbjct: 298 VLAEADLILFVLDASRELSEEDYQIFDIL--TEKNIIFVLNKIDL 340 >gi|255525312|ref|ZP_05392252.1| GTP-binding protein Era [Clostridium carboxidivorans P7] gi|296188181|ref|ZP_06856573.1| GTP-binding protein Era [Clostridium carboxidivorans P7] gi|255510984|gb|EET87284.1| GTP-binding protein Era [Clostridium carboxidivorans P7] gi|296047307|gb|EFG86749.1| GTP-binding protein Era [Clostridium carboxidivorans P7] Length = 293 Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 59/184 (32%), Positives = 96/184 (52%), Gaps = 13/184 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNI--VDTAGIAD 62 I I+G PNVGKSTL N ++ +K+++V P TR+ + Q I+ F + VDT GI Sbjct: 7 ITIIGRPNVGKSTLLNSIMGEKLSIVSCKPQTTRNNI--QTILTEKDFQLVFVDTPGIHK 64 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 K+ + + M + +I E LILFL + + I D I L++ N+P+ +V NK+D Sbjct: 65 PKH-KLGEFMVKIAQDSIKEVDLILFLTNPEDEIGKGDMYILEQLKECNVPVFLVLNKID 123 Query: 123 TRIAQR------NFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIE 176 +R N+ +++S F EI+ ISA EL ++ K + +P +MI Sbjct: 124 ENTQERVAKTLDNYSKVFS--FAEIIPISALKGKNVDELKELMVKYMHEGPKYYPEDMIT 181 Query: 177 NNKR 180 + + Sbjct: 182 DQQE 185 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/171 (26%), Positives = 80/171 (46%), Gaps = 13/171 (7%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 I ++GRPNVGKSTL+N ++G + + TR+++ K+ + DT G+ KP Sbjct: 7 ITIIGRPNVGKSTLLNSIMGEKLSIVSCKPQTTRNNIQTILTEKDFQLVFVDTPGIHKPK 66 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + VK + S++ + + L + K D+ I++ + V L LNK D Sbjct: 67 H---KLGEFMVKIAQDSIKEVDLILFLTNPEDEIGKGDMYILEQLKECNVPVFLVLNKID 123 Query: 326 MVSDKLNLLQDLRTKAIKNLPQIGD----IYINTISGRTGEGLDDLMVSVL 372 + Q+ K + N ++ I I+ + G+ + L +LMV + Sbjct: 124 ENT------QERVAKTLDNYSKVFSFAEIIPISALKGKNVDELKELMVKYM 168 >gi|209524294|ref|ZP_03272844.1| tRNA modification GTPase TrmE [Arthrospira maxima CS-328] gi|209495385|gb|EDZ95690.1| tRNA modification GTPase TrmE [Arthrospira maxima CS-328] Length = 469 Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 48/120 (40%), Positives = 72/120 (60%), Gaps = 7/120 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI--AD 62 +AIVG PNVGKS+L N + A+V + PG TRD + Q ++ G+ ++DTAGI +D Sbjct: 228 VAIVGRPNVGKSSLLNAWSRSDRAIVTDLPGTTRDVVESQLVVGGIPIQVLDTAGIRKSD 287 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 K I +++++A A L+LF +D + G T ++ I + + KN PIIIV NK D Sbjct: 288 DKVEQIGV---ERSQIAAQSADLVLFTLDCENGWTEAENEI--YQQVKNRPIIIVMNKSD 342 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 52/169 (30%), Positives = 86/169 (50%), Gaps = 8/169 (4%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 L++A+VGRPNVGKS+L+N +R + G TRD V PI++ DTAG+RK Sbjct: 226 LKVAIVGRPNVGKSSLLNAWSRSDRAIVTDLPGTTRDVVESQLVVGGIPIQVLDTAGIRK 285 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 + +EQ V++S + ++ + + LD + + + I V N +++ +NK Sbjct: 286 SD---DKVEQIGVERSQIAAQSADLVLFTLDCENGWTEAENEIYQQVKN--RPIIIVMNK 340 Query: 324 WDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVL 372 D +S L++LR I L + I T + +G+ DL S+L Sbjct: 341 SDRLSSA--QLENLRQSIINQLDIKPSLIIAT-AATLNQGITDLEESIL 386 >gi|226326138|ref|ZP_03801656.1| hypothetical protein COPCOM_03957 [Coprococcus comes ATCC 27758] gi|225205680|gb|EEG88034.1| hypothetical protein COPCOM_03957 [Coprococcus comes ATCC 27758] Length = 459 Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 86/157 (54%), Gaps = 4/157 (2%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PN GKS+L N LV ++ A+V G TRD L + GV NI+DTAGI D + Sbjct: 227 IVGKPNAGKSSLMNVLVGEEKAIVTEIAGTTRDVLEENIQLQGVSLNIMDTAGIRDTSDI 286 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 + K D+ + +A LI++++D+ + DH I +R K I++ + + T + Sbjct: 287 -VEKIGVDKAKENAEKADLIIYVVDASRPLDENDHEIIEMIRDKKAVILLNKSDLSTVVD 345 Query: 127 QRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 ++ + + K +++ISA+ + G EL S + ++F Sbjct: 346 KKALETLIT---KPMIDISAKEETGIHELESTLKEMF 379 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 47/143 (32%), Positives = 80/143 (55%), Gaps = 8/143 (5%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 I + ++ +VG+PN GKS+L+N L+G + + +G TRD + + + + I DTA Sbjct: 219 IKEGIKTVIVGKPNAGKSSLMNVLVGEEKAIVTEIAGTTRDVLEENIQLQGVSLNIMDTA 278 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R S I E + V K+ ++ + I ++DA+ P ++ D I++ + + AV+L Sbjct: 279 GIRDTSDIVEKI---GVDKAKENAEKADLIIYVVDASRPLDENDHEIIEMIRDK-KAVIL 334 Query: 320 ALNKWDM--VSDKLNLLQDLRTK 340 LNK D+ V DK L+ L TK Sbjct: 335 -LNKSDLSTVVDK-KALETLITK 355 >gi|99905857|gb|ABF68623.1| YphC [Helicobacter pylori] Length = 170 Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 54/156 (34%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ N G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSNFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREIFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISAL 158 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T + +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSNFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ +F L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREIFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|255101596|ref|ZP_05330573.1| GTP-binding protein Era [Clostridium difficile QCD-63q42] Length = 297 Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 61/162 (37%), Positives = 82/162 (50%), Gaps = 10/162 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIV--DTAGIAD 62 ++IVG PNVGKSTL N +V +K+A++ + P TR+ + QA+ IV DT GI Sbjct: 7 VSIVGRPNVGKSTLMNNVVGEKIAIMSDKPQTTRNTI--QAVYTDEEMQIVFLDTPGIHK 64 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 KN + + M A LILF++D I P D I LR PII+V NK+D Sbjct: 65 PKN-KLGEFMVKAATEAFKNVDLILFVVDDSKKIGPGDRKIIEDLRSVKTPIILVVNKID 123 Query: 123 TRIAQRNFYEIYSLD-----FKEIVEISAEHDLGTSELHSVI 159 + ++I + FKEIV ISA T L VI Sbjct: 124 QLDQKDELFDIIKMYDREGIFKEIVPISALKGKNTDTLIKVI 165 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/129 (25%), Positives = 66/129 (51%), Gaps = 3/129 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +++VGRPNVGKSTL+N ++G + + TR+++ + + I DT G+ KP Sbjct: 7 VSIVGRPNVGKSTLMNNVVGEKIAIMSDKPQTTRNTIQAVYTDEEMQIVFLDTPGIHKPK 66 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + VK + ++ + + + ++D + D +I++ + + ++L +NK D Sbjct: 67 N---KLGEFMVKAATEAFKNVDLILFVVDDSKKIGPGDRKIIEDLRSVKTPIILVVNKID 123 Query: 326 MVSDKLNLL 334 + K L Sbjct: 124 QLDQKDELF 132 >gi|119508848|ref|ZP_01628000.1| tRNA modification GTPase [Nodularia spumigena CCY9414] gi|119466377|gb|EAW47262.1| tRNA modification GTPase [Nodularia spumigena CCY9414] Length = 463 Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 55/167 (32%), Positives = 85/167 (50%), Gaps = 17/167 (10%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKS+L N + A+V + PG TRD + Q ++ G+ ++DTAGI + Sbjct: 228 VAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETV 287 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + K +++ A N A L+L ID+ AG T D I ++ + P+I+V NK+D Sbjct: 288 D-QVEKIGVERSRRAANAADLVLLTIDASAGWTESDQEIYDQVQHR--PLILVINKID-- 342 Query: 125 IAQRNFYEIYSLD-------FKEIVEISAEHDLGTSELHSVIFKIFK 164 E S+D +IV A + G L + I I + Sbjct: 343 -----LVETASIDSGKYPHNIHQIVTTIAAKNQGIDALETAILNIVQ 384 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 52/184 (28%), Positives = 94/184 (51%), Gaps = 26/184 (14%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 L++A+VGRPNVGKS+L+N +R + G TRD V P+++ DTAG+R+ Sbjct: 226 LKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRE 285 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 + +E+ V++S ++ + ++ +DA+ + + D I D V + ++L +NK Sbjct: 286 T---VDQVEKIGVERSRRAANAADLVLLTIDASAGWTESDQEIYDQVQH--RPLILVINK 340 Query: 324 WDMVSDKLNLLQDLRTKAIK------NLPQIGDIYINTISGRTGEGLDDLMVSVLEINKL 377 D+V T +I N+ QI + TI+ + +G+D L ++L I + Sbjct: 341 IDLV----------ETASIDSGKYPHNIHQI----VTTIAAKN-QGIDALETAILNIVQT 385 Query: 378 WKTR 381 K + Sbjct: 386 GKVQ 389 >gi|160882059|ref|YP_001561027.1| tRNA modification GTPase TrmE [Clostridium phytofermentans ISDg] gi|189036198|sp|A9KLX9|MNME_CLOPH RecName: Full=tRNA modification GTPase mnmE gi|160430725|gb|ABX44288.1| tRNA modification GTPase TrmE [Clostridium phytofermentans ISDg] Length = 458 Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 48/154 (31%), Positives = 84/154 (54%), Gaps = 9/154 (5%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 I + +R ++GRPN GKS+L+N ++G R + +G TRD++ + + + DTA Sbjct: 218 IKEGIRTVILGRPNAGKSSLLNLMVGEERAIVTEIAGTTRDTIEETVFLNGLCLNLIDTA 277 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R+ S + E L V+KS++S + + I ++DA+ P + D I++ F ++ Sbjct: 278 GIRETSDLVEKL---GVEKSLKSAKEADLIICVIDASTPLNQDDKEILE--FIKDRKAIV 332 Query: 320 ALNKWDMVS----DKLNLLQDLRTKAIKNLPQIG 349 LNK D+ S +K+NLL + I + Q G Sbjct: 333 LLNKSDLDSVIEEEKINLLTNKPILKISAIDQTG 366 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 47/157 (29%), Positives = 85/157 (54%), Gaps = 4/157 (2%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 I+G PN GKS+L N +V ++ A+V G TRD + +NG+ N++DTAGI + + Sbjct: 226 ILGRPNAGKSSLLNLMVGEERAIVTEIAGTTRDTIEETVFLNGLCLNLIDTAGIRETSDL 285 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 + K +++ + EA LI+ +ID+ + D I F++ + +++ + +D+ I Sbjct: 286 -VEKLGVEKSLKSAKEADLIICVIDASTPLNQDDKEILEFIKDRKAIVLLNKSDLDSVIE 344 Query: 127 QRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 + +I L K I++ISA G +L I ++F Sbjct: 345 EE---KINLLTNKPILKISAIDQTGIKDLEQTITEMF 378 >gi|122702653|emb|CAL88516.1| GTPase [Helicobacter pylori] Length = 170 Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 85/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + I+NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIILNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIILNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|332975861|gb|EGK12739.1| GTP-binding protein Era [Desmospora sp. 8437] Length = 300 Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 52/179 (29%), Positives = 91/179 (50%), Gaps = 7/179 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + ++G PNVGKSTL N+++ +K+A++ + P TR+++ G +DT GI K Sbjct: 11 VTLIGRPNVGKSTLLNQVLGQKVAIMSDKPQTTRNKIRGVYTTEAEQIIFLDTPGIHKPK 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM--- 121 + + M E +ILFL+D+K G+ P D I L+ P+ +V NK+ Sbjct: 71 S-RLGDWMVQTARETFEEVDVILFLVDAKEGMGPGDRFIMEQLKAVKTPVFLVVNKIDQV 129 Query: 122 --DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 DT + + Y + FKE+V +SA + T+ L +I + + +P E + ++ Sbjct: 130 HPDTLLPLIDRYR-KTFSFKEVVPVSALYGNNTTTLLDLIRRELPEGPAYYPSEYVTDH 187 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 64/123 (52%), Gaps = 5/123 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP- 264 + ++GRPNVGKSTL+N++LG + + TR+ + + + I DT G+ KP Sbjct: 11 VTLIGRPNVGKSTLLNQVLGQKVAIMSDKPQTTRNKIRGVYTTEAEQIIFLDTPGIHKPK 70 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 SR+ + + Q T +++ + V + + L+DA D I++ + V L +NK Sbjct: 71 SRLGDWMVQ-TARETFEEV---DVILFLVDAKEGMGPGDRFIMEQLKAVKTPVFLVVNKI 126 Query: 325 DMV 327 D V Sbjct: 127 DQV 129 >gi|323466383|gb|ADX70070.1| GTP-binding protein era-like protein [Lactobacillus helveticus H10] Length = 301 Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 56/162 (34%), Positives = 91/162 (56%), Gaps = 8/162 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTL N LV +K+A+ N P TR+R+ G + + VDT GI Sbjct: 11 VALVGRPNVGKSTLMNYLVGQKVAITSNKPQTTRNRISGIYTSDKMQVVFVDTPGIFK-P 69 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + M+ + ++N+ L+LF+++S+ I D I + L++ +P+ +V NK+D + Sbjct: 70 HSKLDDYMDKASLSSLNDVDLVLFMVESEE-IGKGDQYIANLLKEVKVPVFLVINKVD-Q 127 Query: 125 IAQRNFYEI----YSLD-FKEIVEISAEHDLGTSELHSVIFK 161 I I + L+ FKEI+ ISA +G +L + I K Sbjct: 128 IHPNKLLPIMDSYHKLEGFKEILPISATQGIGIEDLLNTINK 169 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 82/165 (49%), Gaps = 13/165 (7%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP- 264 +A+VGRPNVGKSTL+N L+G +T ++ TR+ +S + + DT G+ KP Sbjct: 11 VALVGRPNVGKSTLMNYLVGQKVAITSNKPQTTRNRISGIYTSDKMQVVFVDTPGIFKPH 70 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 S++ + ++ K S+ S+ + + ++++ K D I + + V L +NK Sbjct: 71 SKLDDYMD----KASLSSLNDVDLVLFMVESE-EIGKGDQYIANLLKEVKVPVFLVINKV 125 Query: 325 DMVS-DKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLM 368 D + +KL + D K G I IS G G++DL+ Sbjct: 126 DQIHPNKLLPIMDSYHKL------EGFKEILPISATQGIGIEDLL 164 >gi|292806538|gb|ADE42399.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 54/156 (34%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++K+A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLAREKIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISAL 158 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLAREKIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122702275|emb|CAL88328.1| GTPase [Helicobacter pylori] Length = 168 Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 55/160 (34%), Positives = 84/160 (52%), Gaps = 6/160 (3%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAI+G PNVGKS+LFNRL K+++A+ + G TRD + +NG ++DT G+A Sbjct: 7 TIAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA-- 64 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSNKM 121 K+ ++K++ A + LIL+++D K + P D I F + K N +V NK+ Sbjct: 65 KDAFLSKEIKAFNLKAAQMSDLILYVVDGK--LIPSDEDIKLFREVFKINPNCFLVINKI 122 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 D + Y S + IS H+ G S L I + Sbjct: 123 DNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAILR 162 Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 4/120 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 8 IAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 67 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +++ ++ +K + S + + ++D + +D+++ VF L +NK D Sbjct: 68 FLSKEIKAFNLKAAQMS----DLILYVVDGKLIPSDEDIKLFREVFKINPNCFLVINKID 123 >gi|292806566|gb|ADE42413.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 55/161 (34%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL K+++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISALIDAIL 163 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122701363|emb|CAL88071.1| GTPase [Helicobacter pylori] Length = 170 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 54/162 (33%), Positives = 85/162 (52%), Gaps = 6/162 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL K+++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPNDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 K+D + Y S + IS H+ G S L I + Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAILR 164 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIP-NDEDLKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|289548419|ref|YP_003473407.1| GTP-binding protein Era [Thermocrinis albus DSM 14484] gi|289182036|gb|ADC89280.1| GTP-binding protein Era [Thermocrinis albus DSM 14484] Length = 302 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 57/183 (31%), Positives = 94/183 (51%), Gaps = 11/183 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYG-QAIINGVIFNIVDTAGIADG 63 +AIVG PNVGKSTL N L+ K+++V PG TR R+ G + I N +DT GI Sbjct: 6 VAIVGKPNVGKSTLLNNLIGTKVSIVSPKPGTTRIRVLGVKNIPNEAQIVFLDTPGIYRP 65 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAI-TSFLRK--KNIPIIIVSNK 120 ++ ++ + M Q ++ +A +ILF+ID++ G D + +++++ K+ P+ +V NK Sbjct: 66 RD-ALGEAMVSQAATSLQDADVILFMIDAEDGWRQDDEMVFNTYIKQYAKDKPVFLVINK 124 Query: 121 MDTRIAQRNFYEIYS------LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEM 174 +D +F+E++ ISA EL I K + P P EM Sbjct: 125 VDKVGPVDELLPFVKEITDQHPEFREVIPISALKGYNLDELLKTIVKYLPEGEPLFPEEM 184 Query: 175 IEN 177 + + Sbjct: 185 VTD 187 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 50/176 (28%), Positives = 88/176 (50%), Gaps = 18/176 (10%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIF-DTAGMRKP 264 +A+VG+PNVGKSTL+N L+G + + G TR V N N +F DT G+ +P Sbjct: 6 VAIVGKPNVGKSTLLNNLIGTKVSIVSPKPGTTRIRVLGVKNIPNEAQIVFLDTPGIYRP 65 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNT-------GHAV 317 ++L + V ++ S++ + + ++DA + + D + VFNT V Sbjct: 66 R---DALGEAMVSQAATSLQDADVILFMIDAEDGWRQDD----EMVFNTYIKQYAKDKPV 118 Query: 318 VLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 L +NK D V LL ++ ++ P+ ++ IS G LD+L+ ++++ Sbjct: 119 FLVINKVDKVGPVDELLPFVKEITDQH-PEFREVI--PISALKGYNLDELLKTIVK 171 >gi|312797626|ref|YP_004030548.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase [Burkholderia rhizoxinica HKI 454] gi|312169401|emb|CBW76404.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase [Burkholderia rhizoxinica HKI 454] Length = 493 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 56/215 (26%), Positives = 110/215 (51%), Gaps = 18/215 (8%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 ++ + G PNVGKS+L N LV ++A+V G TRD++ I G+ +++DTAG+ D Sbjct: 258 SVVLAGQPNVGKSSLLNALVGAELAIVTPIAGTTRDKVAQTIQIEGIPLHVIDTAGLRDT 317 Query: 64 KN----CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 ++ IA+ N+ I A ++L L+D++ G++ DHAI + +P++ + N Sbjct: 318 QDEVERLGIARSWNE-----IERADVVLHLLDARDGMSVEDHAIAARF-PAGVPVVRIFN 371 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI-ENN 178 K+D + + + +E V +SA+ LG L + + +I + + + E + Sbjct: 372 KIDLAGVEPDVRDAGDSAARE-VRLSAKAALGIDLLRAELLRIAGWQAGAESVYLARERH 430 Query: 179 KRNEESPKENITSEGKSSVKN------ISKPLRIA 207 R + E++ + + + +N ++ LR+A Sbjct: 431 LRALRAAGEHLATAAEHAARNAQALDLFAEELRLA 465 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 64/281 (22%), Positives = 119/281 (42%), Gaps = 34/281 (12%) Query: 114 IIIVSNKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLE 173 +I S + R A R+ +S D +V+ V ++ + + P E Sbjct: 172 LIEASTEAAARSAGRSLEGAFSRDIHRLVD------------EVVGLRMLVEATLDFPEE 219 Query: 174 MIENNKRNEESPKENITSEGKSSVKNISKP-------LRIAVVGRPNVGKSTLINRLLGY 226 I+ + + K + ++V+ +K L + + G+PNVGKS+L+N L+G Sbjct: 220 EIDFLEAADARGKLARIRDALAAVQRDAKQGALLREGLSVVLAGQPNVGKSSLLNALVGA 279 Query: 227 NRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTC 286 + +G TRD V+ + + P+ + DTAG+R + +E+ + +S + Sbjct: 280 ELAIVTPIAGTTRDKVAQTIQIEGIPLHVIDTAGLRDTQ---DEVERLGIARSWNEIERA 336 Query: 287 ETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLP 346 + + LLDA +D I + F G VV NK D+ + + ++D A + + Sbjct: 337 DVVLHLLDARDGMSVEDHAIA-ARFPAGVPVVRIFNKIDLAGVEPD-VRDAGDSAAREV- 393 Query: 347 QIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYL 387 +S + G+D L +L I W+ + YL Sbjct: 394 --------RLSAKAALGIDLLRAELLRIAG-WQAGAESVYL 425 >gi|122700783|emb|CAL87980.1| GTPase [Helicobacter pylori] Length = 170 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 53/164 (32%), Positives = 86/164 (52%), Gaps = 6/164 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYIVDGKS--IPSDEDLKLFREIFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 K+D + Y S + IS H+ G S L I ++ Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAILRVL 166 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ +F L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYIVDGKSIPSD-EDLKLFREIFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|126700053|ref|YP_001088950.1| GTP-binding protein Era [Clostridium difficile 630] gi|254976030|ref|ZP_05272502.1| GTP-binding protein Era [Clostridium difficile QCD-66c26] gi|255093418|ref|ZP_05322896.1| GTP-binding protein Era [Clostridium difficile CIP 107932] gi|255307465|ref|ZP_05351636.1| GTP-binding protein Era [Clostridium difficile ATCC 43255] gi|255315163|ref|ZP_05356746.1| GTP-binding protein Era [Clostridium difficile QCD-76w55] gi|255517832|ref|ZP_05385508.1| GTP-binding protein Era [Clostridium difficile QCD-97b34] gi|255650948|ref|ZP_05397850.1| GTP-binding protein Era [Clostridium difficile QCD-37x79] gi|255656417|ref|ZP_05401826.1| GTP-binding protein Era [Clostridium difficile QCD-23m63] gi|260684017|ref|YP_003215302.1| GTP-binding protein [Clostridium difficile CD196] gi|260687677|ref|YP_003218811.1| GTP-binding protein [Clostridium difficile R20291] gi|296450136|ref|ZP_06891897.1| GTP-binding protein Era [Clostridium difficile NAP08] gi|296878517|ref|ZP_06902522.1| GTP-binding protein Era [Clostridium difficile NAP07] gi|306520828|ref|ZP_07407175.1| GTP-binding protein [Clostridium difficile QCD-32g58] gi|122973603|sp|Q182C3|ERA_CLOD6 RecName: Full=GTPase Era gi|115251490|emb|CAJ69323.1| GTP-binding protein Era [Clostridium difficile] gi|260210180|emb|CBA64374.1| GTP-binding protein [Clostridium difficile CD196] gi|260213694|emb|CBE05565.1| GTP-binding protein [Clostridium difficile R20291] gi|296260899|gb|EFH07733.1| GTP-binding protein Era [Clostridium difficile NAP08] gi|296430324|gb|EFH16166.1| GTP-binding protein Era [Clostridium difficile NAP07] Length = 297 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 61/162 (37%), Positives = 82/162 (50%), Gaps = 10/162 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIV--DTAGIAD 62 ++IVG PNVGKSTL N +V +K+A++ + P TR+ + QA+ IV DT GI Sbjct: 7 VSIVGRPNVGKSTLMNNVVGEKIAIMSDKPQTTRNTI--QAVYTDEEMQIVFLDTPGIHK 64 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 KN + + M A LILF++D I P D I LR PII+V NK+D Sbjct: 65 PKN-KLGEFMVKAATEAFKNVDLILFVVDDSKKIGPGDRKIIEDLRSVKTPIILVVNKID 123 Query: 123 TRIAQRNFYEIYSLD-----FKEIVEISAEHDLGTSELHSVI 159 + ++I + FKEIV ISA T L VI Sbjct: 124 QLDQKDELFDIIKMYDREGIFKEIVPISALKGKNTDTLIKVI 165 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/129 (25%), Positives = 66/129 (51%), Gaps = 3/129 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +++VGRPNVGKSTL+N ++G + + TR+++ + + I DT G+ KP Sbjct: 7 VSIVGRPNVGKSTLMNNVVGEKIAIMSDKPQTTRNTIQAVYTDEEMQIVFLDTPGIHKPK 66 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + VK + ++ + + + ++D + D +I++ + + ++L +NK D Sbjct: 67 N---KLGEFMVKAATEAFKNVDLILFVVDDSKKIGPGDRKIIEDLRSVKTPIILVVNKID 123 Query: 326 MVSDKLNLL 334 + K L Sbjct: 124 QLDQKDELF 132 >gi|260655716|ref|ZP_05861189.1| tRNA modification GTPase TrmE [Jonquetella anthropi E3_33 E1] gi|260629633|gb|EEX47827.1| tRNA modification GTPase TrmE [Jonquetella anthropi E3_33 E1] Length = 454 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 46/175 (26%), Positives = 95/175 (54%), Gaps = 13/175 (7%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + +R+A+VGRPN GKS+L+N LL +R + S G TRD V ++ P+ + DTA Sbjct: 214 LREGVRVALVGRPNAGKSSLLNALLKESRSIVTSVPGTTRDIVEAVLTYRGVPLRLVDTA 273 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 GM +PS + +E V+++ +++++ + + ++D + P + D++++ H +V+ Sbjct: 274 GMGEPSH--DEVELLGVERAKKAMKSADVRVWIIDGSRPADDLDMKLIADAAAGSHVLVI 331 Query: 320 ALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEI 374 + + + D+ L + Q D + +S + G GLD+L +++ + Sbjct: 332 SKSDLERKFDEKELAE-----------QFPDSPLVVLSAKKGAGLDELKEAIVSL 375 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/158 (24%), Positives = 77/158 (48%), Gaps = 2/158 (1%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PN GKS+L N L+K+ ++V + PG TRD + GV +VDTAG+ + Sbjct: 220 VALVGRPNAGKSSLLNALLKESRSIVTSVPGTTRDIVEAVLTYRGVPLRLVDTAGMGEPS 279 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + ++ + A+ A + +++ID D + + + ++I + ++ + Sbjct: 280 HDEVELLGVERAKKAMKSADVRVWIIDGSRPADDLDMKLIADAAAGSHVLVISKSDLERK 339 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKI 162 ++ E + +V +SA+ G EL I + Sbjct: 340 FDEKELAEQFP--DSPLVVLSAKKGAGLDELKEAIVSL 375 >gi|78776726|ref|YP_393041.1| tRNA modification GTPase TrmE [Sulfurimonas denitrificans DSM 1251] gi|123550691|sp|Q30T75|MNME_SULDN RecName: Full=tRNA modification GTPase mnmE gi|78497266|gb|ABB43806.1| tRNA modification GTPase trmE [Sulfurimonas denitrificans DSM 1251] Length = 446 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 72/120 (60%), Gaps = 3/120 (2%) Query: 188 NITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWN 247 N T + + + + + ++A++G+PNVGKS+L+N LL YNR + +G TRD++ Sbjct: 200 NKTLQASKAREGLMQGFKVAIIGKPNVGKSSLLNALLNYNRAIVSDIAGTTRDTIEEQVK 259 Query: 248 WKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIV 307 H I I DTAG+R+ S + +E+ +++S++++ + I L DA+ + +D +I+ Sbjct: 260 IGTHLIRIVDTAGIREAS---DEIERIGIERSLEAINESDIVIALFDASRVADYEDEQIL 316 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 55/175 (31%), Positives = 90/175 (51%), Gaps = 11/175 (6%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + +AI+G PNVGKS+L N L+ A+V + G TRD + Q I + IVDTAGI + Sbjct: 216 FKVAIIGKPNVGKSSLLNALLNYNRAIVSDIAGTTRDTIEEQVKIGTHLIRIVDTAGIRE 275 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKK--NIPIIIVSNK 120 + I + +++ AINE+ +++ L D+ D I S + K + ++ V NK Sbjct: 276 ASD-EIERIGIERSLEAINESDIVIALFDASRVADYEDEQILSLIESKAGSKNVLHVKNK 334 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 +D + FY SL+F +EI+++ G EL + I Q + + +I Sbjct: 335 IDL---EEKFYR-SSLEFD--IEINSKE--GVEELILALENIMNQANTSDEMMLI 381 >gi|323499982|ref|ZP_08104938.1| GTPase Era [Vibrio sinaloensis DSM 21326] gi|323314948|gb|EGA68003.1| GTPase Era [Vibrio sinaloensis DSM 21326] Length = 325 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 49/150 (32%), Positives = 82/150 (54%), Gaps = 8/150 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL NR++ +K+++ P TR R+ G VDT G+ + Sbjct: 34 VAIVGRPNVGKSTLLNRILGQKISITSRKPQTTRHRIMGVDTEGDYQAIYVDTPGLHIEE 93 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN ++++ +L+ FL+D T D + + L+K N P+++ NK+D Sbjct: 94 KRAINRLMNRAANSSLSDVNLVFFLVDG-THWTNDDEMVLTKLQKSNFPVVLCVNKVDN- 151 Query: 125 IAQRNFYEIY------SLDFKEIVEISAEH 148 + RN ++ +DF ++V ISA+H Sbjct: 152 VQDRNDVMLHMMEMSKKMDFVDVVPISAKH 181 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 62/130 (47%), Gaps = 5/130 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMR-KP 264 +A+VGRPNVGKSTL+NR+LG +T + TR + ++ DT G+ + Sbjct: 34 VAIVGRPNVGKSTLLNRILGQKISITSRKPQTTRHRIMGVDTEGDYQAIYVDTPGLHIEE 93 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 R L + S+ V L+D T + D ++ + + VVL +NK Sbjct: 94 KRAINRLMNRAANSSLSDVNLV---FFLVDGT-HWTNDDEMVLTKLQKSNFPVVLCVNKV 149 Query: 325 DMVSDKLNLL 334 D V D+ +++ Sbjct: 150 DNVQDRNDVM 159 >gi|240145748|ref|ZP_04744349.1| tRNA modification GTPase TrmE [Roseburia intestinalis L1-82] gi|257202164|gb|EEV00449.1| tRNA modification GTPase TrmE [Roseburia intestinalis L1-82] Length = 457 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 53/157 (33%), Positives = 86/157 (54%), Gaps = 4/157 (2%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 I+G PN GKS+L N LV ++ A+V + G TRD L Q +NG+I N++DTAGI + + Sbjct: 225 IIGKPNAGKSSLLNTLVGEERAIVTDIAGTTRDVLEEQINLNGIILNVIDTAGIRETDDV 284 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 + K D+ + +NEA L ++++D+ + D I L+ + I++ NK D Sbjct: 285 -VEKIGVDRAKKYLNEADLAIYVVDTSTQLDENDFEIMELLKDR--KAIVLLNKSDLTPV 341 Query: 127 QRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 + LD K+++ ISA+ G EL I ++F Sbjct: 342 TDSESIRKHLD-KKMIAISAKEQTGIEELEETIREMF 377 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 51/207 (24%), Positives = 100/207 (48%), Gaps = 24/207 (11%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + + ++G+PN GKS+L+N L+G R + +G TRD + N + + D Sbjct: 215 KILKEGISTVIIGKPNAGKSSLLNTLVGEERAIVTDIAGTTRDVLEEQINLNGIILNVID 274 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ + E + V ++ + + + I ++D + ++ D I++ + A+ Sbjct: 275 TAGIRETDDVVEKI---GVDRAKKYLNEADLAIYVVDTSTQLDENDFEIME-LLKDRKAI 330 Query: 318 VLALNKWDM--VSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEIN 375 VL LNK D+ V+D ++ + L K I IS + G+++L ++ E+ Sbjct: 331 VL-LNKSDLTPVTDSESIRKHLDKKMI------------AISAKEQTGIEELEETIREM- 376 Query: 376 KLWKTRITTS---YLNSWLQKTQLQNP 399 + +T + Y+ + KT LQ Sbjct: 377 -FFTGEVTFNDEVYITNIRHKTALQEA 402 >gi|122702577|emb|CAL88478.1| GTPase [Helicobacter pylori] Length = 170 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ N G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSNFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERSYAFSSFGIPKSFNISVSHNRGISALIDAIL 163 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 66/121 (54%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T + +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSNFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|292806682|gb|ADE42471.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 53/159 (33%), Positives = 84/159 (52%), Gaps = 6/159 (3%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + ++NG ++DT G+A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIVLNGYEVELLDTGGMA-- 66 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSNKM 121 K+ ++K++ A + LIL+++D K+ P D + F + K N +V NK+ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVINKI 124 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 D + Y S + IS H+ G S L I Sbjct: 125 DNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD + +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIVLNGYEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122700681|emb|CAL87929.1| GTPase [Helicobacter pylori] gi|122700687|emb|CAL87932.1| GTPase [Helicobacter pylori] Length = 170 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 53/164 (32%), Positives = 85/164 (51%), Gaps = 6/164 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 K+D + Y S + IS H+ G S L I + Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSVL 166 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 51/171 (29%), Positives = 84/171 (49%), Gaps = 12/171 (7%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEIN 375 D +DK + R A + I+ R L D ++SVL +N Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSVLNLN 169 >gi|292806542|gb|ADE42401.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 54/162 (33%), Positives = 85/162 (52%), Gaps = 6/162 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 K+D + Y S + IS H+ G S L I + Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISALIEAILR 164 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|193214522|ref|YP_001995721.1| tRNA modification GTPase TrmE [Chloroherpeton thalassium ATCC 35110] gi|193087999|gb|ACF13274.1| tRNA modification GTPase TrmE [Chloroherpeton thalassium ATCC 35110] Length = 483 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 57/153 (37%), Positives = 82/153 (53%), Gaps = 4/153 (2%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AIVG PN GKSTL N L+ K+ A+V + PG TRD + +++GV F ++DTAG+ + Sbjct: 244 AIVGRPNAGKSTLLNALLGKERAIVSHVPGTTRDYIEESFVLDGVPFRLIDTAGLRLSDD 303 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKK--NIPIIIVSNKMDT 123 ++ + E I EA L++F+ D+ IT + LRKK + IV+NK+D Sbjct: 304 ALESEGIRRSYE-KITEADLVIFVHDATEKITEAERTEILALRKKSAHAKFFIVANKIDC 362 Query: 124 RIAQRNFYEI-YSLDFKEIVEISAEHDLGTSEL 155 NF + E+V ISA G SEL Sbjct: 363 VTGAPNFANAPDEQEHIEVVPISALRREGLSEL 395 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 44/138 (31%), Positives = 69/138 (50%), Gaps = 5/138 (3%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + + A+VGRPN GKSTL+N LLG R + G TRD + S+ P + D Sbjct: 235 KFVKEGVATAIVGRPNAGKSTLLNALLGKERAIVSHVPGTTRDYIEESFVLDGVPFRLID 294 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPF-EKQDLRIVDSVFNTGHA 316 TAG+R ++LE + +++S + + + I + DAT E + I+ + HA Sbjct: 295 TAGLRLSD---DALESEGIRRSYEKITEADLVIFVHDATEKITEAERTEILALRKKSAHA 351 Query: 317 -VVLALNKWDMVSDKLNL 333 + NK D V+ N Sbjct: 352 KFFIVANKIDCVTGAPNF 369 >gi|122701517|emb|CAL88148.1| GTPase [Helicobacter pylori] Length = 170 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 85/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLSRERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + ISA H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISASHNRGISTLIDAIL 163 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLSRERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|242255902|gb|ACS88935.1| GTPase [Helicobacter pylori] Length = 170 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 53/164 (32%), Positives = 86/164 (52%), Gaps = 6/164 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINSNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 K+D + Y S + IS H+ G S L I ++ Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAILRVL 166 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINSNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|258511948|ref|YP_003185382.1| GTP-binding protein Era [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478674|gb|ACV58993.1| GTP-binding protein Era [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 298 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 54/179 (30%), Positives = 89/179 (49%), Gaps = 6/179 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A++G PNVGKSTL N LV +K+A++ N P TR+R+ G +DT GI K Sbjct: 8 VALIGRPNVGKSTLLNALVGQKVAIMSNRPQTTRNRIRGVRTTETSQMIFIDTPGIHKPK 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 + + + M D +NE +I+ ++D+ + + P + I L + P+I+ NK+D Sbjct: 68 H-RLGEYMVDAALKTLNEVDVIVLVVDASSPVHPTEQEIAKQLERVRTPVILALNKVDAL 126 Query: 124 ---RIAQRNFYEIYSLD-FKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 + + E +L F+E V ISA L +I K + +P +MI + Sbjct: 127 EDRALVLKRIEEYQALRPFEEYVPISALRGEQVDLLAEIIEKRLPEGPKYYPDDMITDQ 185 Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 45/169 (26%), Positives = 87/169 (51%), Gaps = 10/169 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKSTL+N L+G + ++ TR+ + + + DT G+ KP Sbjct: 8 VALIGRPNVGKSTLLNALVGQKVAIMSNRPQTTRNRIRGVRTTETSQMIFIDTPGIHKPK 67 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + V +++++ + ++++DA+ P + I + V+LALNK D Sbjct: 68 ---HRLGEYMVDAALKTLNEVDVIVLVVDASSPVHPTEQEIAKQLERVRTPVILALNKVD 124 Query: 326 MVSDKLNLLQDLRT-KAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 + D+ +L+ + +A++ + Y+ IS GE + DL+ ++E Sbjct: 125 ALEDRALVLKRIEEYQALRPFEE----YV-PISALRGEQV-DLLAEIIE 167 >gi|269791929|ref|YP_003316833.1| tRNA modification GTPase TrmE [Thermanaerovibrio acidaminovorans DSM 6589] gi|269099564|gb|ACZ18551.1| tRNA modification GTPase TrmE [Thermanaerovibrio acidaminovorans DSM 6589] Length = 450 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 56/170 (32%), Positives = 94/170 (55%), Gaps = 13/170 (7%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 +S+ +++ +VGRPNVGKS+L+N L R + G TRD V + + PI++ DTA Sbjct: 217 LSQGVQVTLVGRPNVGKSSLLNSLSRQARAIVTPIPGTTRDVVEAAVIHRGVPIKLLDTA 276 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R + E+L K +++M T + +++LD + P ++DL ++ S+ A Sbjct: 277 GIRDSNDPIEALGVKLARETML---TADLRVLVLDGSSPPHREDLELLGSLDMPAAA--- 330 Query: 320 ALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMV 369 ALNK D+ +D + Q LR + N + ++ +SG+ E L DLMV Sbjct: 331 ALNKADLGTDP-SWDQVLRDARVPN------VTLSALSGKGVEELKDLMV 373 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 60/120 (50%), Gaps = 8/120 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + +VG PNVGKS+L N L ++ A+V PG TRD + I GV ++DTAGI D Sbjct: 223 VTLVGRPNVGKSSLLNSLSRQARAIVTPIPGTTRDVVEAAVIHRGVPIKLLDTAGIRDSN 282 Query: 65 NC--SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + ++ ++ +T L A L + ++D G +P L ++P NK D Sbjct: 283 DPIEALGVKLARETMLT---ADLRVLVLD---GSSPPHREDLELLGSLDMPAAAALNKAD 336 >gi|122702147|emb|CAL88264.1| GTPase [Helicobacter pylori] Length = 170 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 53/164 (32%), Positives = 86/164 (52%), Gaps = 6/164 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 K+D + Y S + IS H+ G S L I ++ Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAILRVL 166 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|291539801|emb|CBL12912.1| tRNA modification GTPase trmE [Roseburia intestinalis XB6B4] Length = 457 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 53/157 (33%), Positives = 86/157 (54%), Gaps = 4/157 (2%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 I+G PN GKS+L N LV ++ A+V + G TRD L Q +NG+I N++DTAGI + + Sbjct: 225 IIGKPNAGKSSLLNTLVGEERAIVTDIAGTTRDVLEEQINLNGIILNVIDTAGIRETDDV 284 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 + K D+ + +NEA L ++++D+ + D I L+ + I++ NK D Sbjct: 285 -VEKIGVDRAKKYLNEADLAIYVVDTSTQLDENDFEIMELLKDR--KAIVLLNKSDLTPV 341 Query: 127 QRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 + LD K+++ ISA+ G EL I ++F Sbjct: 342 TDSESIRKHLD-KKMIAISAKEQTGIEELEETIREMF 377 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 51/207 (24%), Positives = 100/207 (48%), Gaps = 24/207 (11%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + + ++G+PN GKS+L+N L+G R + +G TRD + N + + D Sbjct: 215 KILKEGISTVIIGKPNAGKSSLLNTLVGEERAIVTDIAGTTRDVLEEQINLNGIILNVID 274 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ + E + V ++ + + + I ++D + ++ D I++ + A+ Sbjct: 275 TAGIRETDDVVEKI---GVDRAKKYLNEADLAIYVVDTSTQLDENDFEIME-LLKDRKAI 330 Query: 318 VLALNKWDM--VSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEIN 375 VL LNK D+ V+D ++ + L K I IS + G+++L ++ E+ Sbjct: 331 VL-LNKSDLTPVTDSESIRKHLDKKMI------------AISAKEQTGIEELEETIREM- 376 Query: 376 KLWKTRITTS---YLNSWLQKTQLQNP 399 + +T + Y+ + KT LQ Sbjct: 377 -FFTGEVTFNDEVYITNIRHKTALQEA 402 >gi|226323780|ref|ZP_03799298.1| hypothetical protein COPCOM_01555 [Coprococcus comes ATCC 27758] gi|225207964|gb|EEG90318.1| hypothetical protein COPCOM_01555 [Coprococcus comes ATCC 27758] Length = 298 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 57/165 (34%), Positives = 83/165 (50%), Gaps = 13/165 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + ++G PNVGKSTL N L+ +K+A+ N P TR+R+ + VDT GI K Sbjct: 10 VTLIGRPNVGKSTLMNYLIGQKIAITSNKPQTTRNRIQTVLTTDEGQIVFVDTPGIHKAK 69 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 N + M + E +NE ++L+L++ I + I L K P+++V NK DT Sbjct: 70 N-KLGTYMVNVAERTLNEVDVVLWLVEPSTFIGAGEQHIVQQLGKVTTPVVLVINKADTV 128 Query: 124 -------RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 IA+ N E+Y F +IV +SA T EL VI K Sbjct: 129 KKEDILPCIAKYN--EVYQ--FADIVPVSARTGENTDELLKVIMK 169 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 45/168 (26%), Positives = 78/168 (46%), Gaps = 8/168 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 + ++GRPNVGKSTL+N L+G +T ++ TR+ + I DT G+ K Sbjct: 10 VTLIGRPNVGKSTLMNYLIGQKIAITSNKPQTTRNRIQTVLTTDEGQIVFVDTPGIHKAK 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L V + +++ + + L++ + + IV + VVL +NK D Sbjct: 70 N---KLGTYMVNVAERTLNEVDVVLWLVEPSTFIGAGEQHIVQQLGKVTTPVVLVINKAD 126 Query: 326 MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 V K ++L + + Q DI +S RTGE D+L+ +++ Sbjct: 127 TVK-KEDILPCI--AKYNEVYQFADIV--PVSARTGENTDELLKVIMK 169 >gi|251796247|ref|YP_003010978.1| GTP-binding protein Era [Paenibacillus sp. JDR-2] gi|247543873|gb|ACT00892.1| GTP-binding protein Era [Paenibacillus sp. JDR-2] Length = 299 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 50/148 (33%), Positives = 78/148 (52%), Gaps = 9/148 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKSTL N L+ +K+A++ + P TR++++G + +DT GI Sbjct: 11 VAIIGRPNVGKSTLMNHLIGQKIAIMSDKPQTTRNKIHGVYTTDTSQIVFLDTPGIHK-P 69 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + M E A+ E +LFLID G+ D I L+K + P+ +V NK+D Sbjct: 70 QSKLGDYMMKTAEGALKEVEAVLFLIDVADGLGGGDRFIIEQLKKVDTPVFLVMNKIDKV 129 Query: 125 IAQR------NFYEIYSLDFKEIVEISA 146 ++ + ++Y F EIV ISA Sbjct: 130 QPEQLLSTITQYKDLYP--FAEIVPISA 155 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 3/123 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKSTL+N L+G + + TR+ + + I DT G+ KP Sbjct: 11 VAIIGRPNVGKSTLMNHLIGQKIAIMSDKPQTTRNKIHGVYTTDTSQIVFLDTPGIHKPQ 70 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 KT + +++ V E + L+D D I++ + V L +NK D Sbjct: 71 SKLGDYMMKTAEGALKEV---EAVLFLIDVADGLGGGDRFIIEQLKKVDTPVFLVMNKID 127 Query: 326 MVS 328 V Sbjct: 128 KVQ 130 >gi|122702619|emb|CAL88499.1| GTPase [Helicobacter pylori] gi|122702667|emb|CAL88523.1| GTPase [Helicobacter pylori] Length = 170 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 53/164 (32%), Positives = 85/164 (51%), Gaps = 6/164 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 K+D + Y S + IS H+ G S L I + Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSVL 166 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 51/171 (29%), Positives = 85/171 (49%), Gaps = 12/171 (7%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEIN 375 D +DK + R A + I+ R L D ++SVL++N Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSVLDLN 169 >gi|122700853|emb|CAL88015.1| GTPase [Helicobacter pylori] Length = 170 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 54/159 (33%), Positives = 83/159 (52%), Gaps = 6/159 (3%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGMA-- 66 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSNKM 121 K+ ++K++ A + LIL+++D K+ P D I F + K N +V NK+ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKTNPNCFLVINKI 124 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 D + Y S + IS H+ G S L I Sbjct: 125 DNDKEKERAYAFSSFGIPKSFNISVSHNRGISTLIDAIL 163 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD + +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|291522460|emb|CBK80753.1| GTP-binding protein Era [Coprococcus catus GD/7] Length = 300 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 57/159 (35%), Positives = 79/159 (49%), Gaps = 5/159 (3%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 ++G PNVGKSTL N L+ +K+A+ N P TR+R+ VDT GI KN Sbjct: 12 LIGRPNVGKSTLMNHLIGQKIAITSNKPQTTRNRIQTVYTSEEGQIVFVDTPGIHKAKN- 70 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 + + M E ++E +IL+L++ I + I LRK PII+V NK+DT Sbjct: 71 KLGEYMVTVAERTLSEVDVILWLVEPTTFIGAGEQHIAEQLRKTKTPIILVINKIDTVKR 130 Query: 127 QRNFYEIYS----LDFKEIVEISAEHDLGTSELHSVIFK 161 + I + DF EIV SA T +L VI K Sbjct: 131 EEILKSIDAYKDICDFAEIVPCSALKGDNTEDLIKVIMK 169 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 32/120 (26%), Positives = 59/120 (49%), Gaps = 3/120 (2%) Query: 208 VVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRI 267 ++GRPNVGKSTL+N L+G +T ++ TR+ + + + I DT G+ K Sbjct: 12 LIGRPNVGKSTLMNHLIGQKIAITSNKPQTTRNRIQTVYTSEEGQIVFVDTPGIHKAKN- 70 Query: 268 TESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMV 327 L + V + +++ + + L++ T + I + + T ++L +NK D V Sbjct: 71 --KLGEYMVTVAERTLSEVDVILWLVEPTTFIGAGEQHIAEQLRKTKTPIILVINKIDTV 128 >gi|160893418|ref|ZP_02074203.1| hypothetical protein CLOL250_00967 [Clostridium sp. L2-50] gi|156864813|gb|EDO58244.1| hypothetical protein CLOL250_00967 [Clostridium sp. L2-50] Length = 459 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 60/178 (33%), Positives = 92/178 (51%), Gaps = 4/178 (2%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PN GKS+L N + + A+V + G TRD L ING+I NIVDTAGI D ++ Sbjct: 227 IVGKPNAGKSSLLNMFLGENRAIVTDIAGTTRDTLEEVVNINGIILNIVDTAGIRDTEDI 286 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 ++ E A ++A LIL++ID + D I S ++ KN +I V NK D + Sbjct: 287 VEKMGVDKALEFA-SQADLILYVIDGSVPLDDNDKQIISEIKGKN--VIAVMNKNDLQTV 343 Query: 127 QRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + L +IVE+SA G +L+ ++ F ++ ++ N R++E Sbjct: 344 VDKMWITCELGC-DIVELSASTGDGKEKLYDLLNDKFFSGELDYNDQLYITNARHKEE 400 Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 43/153 (28%), Positives = 79/153 (51%), Gaps = 7/153 (4%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + ++ +VG+PN GKS+L+N LG NR + +G TRD++ N + I DTA Sbjct: 219 LKEGIKTVIVGKPNAGKSSLLNMFLGENRAIVTDIAGTTRDTLEEVVNINGIILNIVDTA 278 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R I E + V K+++ + + ++D ++P + D +I+ + G V+ Sbjct: 279 GIRDTEDIVEKM---GVDKALEFASQADLILYVIDGSVPLDDNDKQIISEI--KGKNVIA 333 Query: 320 ALNKWDM--VSDKLNLLQDLRTKAIKNLPQIGD 350 +NK D+ V DK+ + +L ++ GD Sbjct: 334 VMNKNDLQTVVDKMWITCELGCDIVELSASTGD 366 >gi|78185703|ref|YP_378137.1| tRNA modification GTPase TrmE [Synechococcus sp. CC9902] gi|123580994|sp|Q3AVY3|MNME_SYNS9 RecName: Full=tRNA modification GTPase mnmE gi|78169997|gb|ABB27094.1| tRNA modification GTPase trmE [Synechococcus sp. CC9902] Length = 451 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 42/118 (35%), Positives = 74/118 (62%), Gaps = 2/118 (1%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKS+L NRL +++ A+V PG TRD L + +++GV ++DTAGI Sbjct: 225 VALVGRPNVGKSSLLNRLSRRERAIVTELPGTTRDLLESEIVLDGVPITLMDTAGIR-AT 283 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 N ++ + ++E A+ A +++ ++D AG T D + + + ++P ++V+NK D Sbjct: 284 NDAVEQLGIARSEEALISADVVVLIVDGHAGWTETDAQLLARI-PNDVPRVVVANKSD 340 Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 55/192 (28%), Positives = 98/192 (51%), Gaps = 10/192 (5%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 LR+A+VGRPNVGKS+L+NRL R + G TRD + PI + DTAG+R Sbjct: 223 LRVALVGRPNVGKSSLLNRLSRRERAIVTELPGTTRDLLESEIVLDGVPITLMDTAGIRA 282 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 +++EQ + +S +++ + + ++++D + + D +++ + N VV+A NK Sbjct: 283 ---TNDAVEQLGIARSEEALISADVVVLIVDGHAGWTETDAQLLARIPNDVPRVVVA-NK 338 Query: 324 WDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRIT 383 D+ L L D++ A+ + D ++ + R G G D VL +N + R Sbjct: 339 SDLDGPPLPGLVDVQFSALNGAGE--DAFVQVLLERCGAG--DAAGIVLSLNT--RQRDL 392 Query: 384 TSYLNSWLQKTQ 395 S + L+++ Sbjct: 393 ASVAAAALERSH 404 >gi|154503056|ref|ZP_02040116.1| hypothetical protein RUMGNA_00878 [Ruminococcus gnavus ATCC 29149] gi|153796297|gb|EDN78717.1| hypothetical protein RUMGNA_00878 [Ruminococcus gnavus ATCC 29149] Length = 458 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 52/159 (32%), Positives = 87/159 (54%), Gaps = 5/159 (3%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PN GKS+L N L ++ A+V + G TRD L Q + G+ NI+DTAGI D ++ Sbjct: 223 IVGKPNAGKSSLLNVLSGRERAIVTDIEGTTRDVLEEQIHLQGLSLNIIDTAGIRDTEDV 282 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 I K ++ + A L+++++D+ + D I + + K I++ ++T ++ Sbjct: 283 -IEKMGVEKAKEYAKSADLVIYVVDASRSLDENDQKILNLVLDKKAIILLNKTDLETVVS 341 Query: 127 QRNFYEIYSLDFKEI--VEISAEHDLGTSELHSVIFKIF 163 + E L +EI +EISA+ +LG EL + K+F Sbjct: 342 KEMLAE--QLLGREIPMIEISAKEELGIQELEKTLEKMF 378 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 37/127 (29%), Positives = 72/127 (56%), Gaps = 5/127 (3%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + ++ +VG+PN GKS+L+N L G R + G TRD + + + + I DTA Sbjct: 215 LKEGIQTVIVGKPNAGKSSLLNVLSGRERAIVTDIEGTTRDVLEEQIHLQGLSLNIIDTA 274 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R + +E+ V+K+ + ++ + I ++DA+ ++ D +I++ V + A++L Sbjct: 275 GIRDTEDV---IEKMGVEKAKEYAKSADLVIYVVDASRSLDENDQKILNLVLDK-KAIIL 330 Query: 320 ALNKWDM 326 LNK D+ Sbjct: 331 -LNKTDL 336 >gi|299769158|ref|YP_003731184.1| GTP-binding protein Era [Acinetobacter sp. DR1] gi|298699246|gb|ADI89811.1| GTP-binding protein Era [Acinetobacter sp. DR1] Length = 342 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 55/176 (31%), Positives = 87/176 (49%), Gaps = 6/176 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N L+ +K+++ P TR ++ G + VDT G+ + Sbjct: 42 VAIVGRPNVGKSTLMNHLLGQKLSITSRKPQTTRHKIIGIDSREKMQAVYVDTPGMHKKE 101 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I K MN A+ + +L+LF+ID+ T D + L+ +P+I+V NK DT Sbjct: 102 VRAINKMMNRAAHSALRDVNLVLFVIDAYKW-TQNDDLVLEKLKNAEMPVILVINKADTF 160 Query: 125 IAQRNFYEIYS-----LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 +R+ + ++F EIV +SA L I K + P + + I Sbjct: 161 EDKRDILPLIQERAKLMNFAEIVPVSALRGANLEHLSETIEKYLPYQAPLYSFDQI 216 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 41/137 (29%), Positives = 71/137 (51%), Gaps = 5/137 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS-VSISWNWKNHPIEIFDTAGMRKP 264 +A+VGRPNVGKSTL+N LLG +T + TR + I K + + DT GM K Sbjct: 42 VAIVGRPNVGKSTLMNHLLGQKLSITSRKPQTTRHKIIGIDSREKMQAVYV-DTPGMHKK 100 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 ++ + + + ++R + ++DA + DL +++ + N V+L +NK Sbjct: 101 E--VRAINKMMNRAAHSALRDVNLVLFVIDAYKWTQNDDL-VLEKLKNAEMPVILVINKA 157 Query: 325 DMVSDKLNLLQDLRTKA 341 D DK ++L ++ +A Sbjct: 158 DTFEDKRDILPLIQERA 174 >gi|169795097|ref|YP_001712890.1| GTP-binding protein Era [Acinetobacter baumannii AYE] gi|213158241|ref|YP_002320292.1| GTP-binding protein Era [Acinetobacter baumannii AB0057] gi|301345823|ref|ZP_07226564.1| GTP-binding protein Era [Acinetobacter baumannii AB056] gi|301594765|ref|ZP_07239773.1| GTP-binding protein Era [Acinetobacter baumannii AB059] gi|169148024|emb|CAM85887.1| GTP-binding protein,16S rRNA-binding,ribosome-associated GTPase [Acinetobacter baumannii AYE] gi|193078015|gb|ABO12935.2| GTP-binding protein16S rRNA-binding,ribosome-associated GTPase [Acinetobacter baumannii ATCC 17978] gi|213057401|gb|ACJ42303.1| GTP-binding protein Era [Acinetobacter baumannii AB0057] Length = 342 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 55/178 (30%), Positives = 88/178 (49%), Gaps = 6/178 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N L+ +K+++ P TR ++ G + VDT G+ + Sbjct: 42 VAIVGRPNVGKSTLMNHLLGQKLSITSRKPQTTRHKIIGIDSREKMQAVYVDTPGMHKKE 101 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I K MN A+ + +L+LF+ID+ T D + L+ ++P+I+V NK DT Sbjct: 102 VRAINKMMNRAAHSALRDVNLVLFVIDAHKW-TQNDDLVLEKLKNADMPVILVINKADTF 160 Query: 125 IAQRNFYEIYS-----LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 +R + ++F EIV +SA L I K + P + + I + Sbjct: 161 GDKREILPLIQERAKLMNFAEIVPVSALRGANLEHLSETIEKYLPYQPPLYSFDQITD 218 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 41/137 (29%), Positives = 71/137 (51%), Gaps = 5/137 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS-VSISWNWKNHPIEIFDTAGMRKP 264 +A+VGRPNVGKSTL+N LLG +T + TR + I K + + DT GM K Sbjct: 42 VAIVGRPNVGKSTLMNHLLGQKLSITSRKPQTTRHKIIGIDSREKMQAVYV-DTPGMHK- 99 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 + ++ + + + ++R + ++DA + DL +++ + N V+L +NK Sbjct: 100 -KEVRAINKMMNRAAHSALRDVNLVLFVIDAHKWTQNDDL-VLEKLKNADMPVILVINKA 157 Query: 325 DMVSDKLNLLQDLRTKA 341 D DK +L ++ +A Sbjct: 158 DTFGDKREILPLIQERA 174 >gi|122702731|emb|CAL88555.1| GTPase [Helicobacter pylori] Length = 170 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 53/164 (32%), Positives = 86/164 (52%), Gaps = 6/164 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDTLLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 K+D + Y S + IS H+ G S L I ++ Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAILRVL 166 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 84/172 (48%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDT 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D ++ VL++NK Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILRVLDLNK 170 >gi|122700647|emb|CAL87912.1| GTPase [Helicobacter pylori] Length = 170 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 53/164 (32%), Positives = 85/164 (51%), Gaps = 6/164 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 K+D + Y S + IS H+ G S L I + Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAILNVL 166 Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 50/171 (29%), Positives = 84/171 (49%), Gaps = 12/171 (7%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEIN 375 D +DK + R A + I+ R L D +++VL +N Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILNVLNLN 169 >gi|242255824|gb|ACS88896.1| GTPase [Helicobacter pylori] Length = 170 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL K+++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 50/171 (29%), Positives = 83/171 (48%), Gaps = 12/171 (7%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEIN 375 D +DK + R A + I+ R L D ++S L +N Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSALNLN 169 >gi|226951499|ref|ZP_03821963.1| GTP-binding protein, 16S rRNA-binding, ribosome-associated GTPase [Acinetobacter sp. ATCC 27244] gi|226837792|gb|EEH70175.1| GTP-binding protein, 16S rRNA-binding, ribosome-associated GTPase [Acinetobacter sp. ATCC 27244] Length = 341 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 54/176 (30%), Positives = 88/176 (50%), Gaps = 6/176 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N L+ +K+++ P TR ++ G VDT G+ + Sbjct: 41 VAIVGRPNVGKSTLMNHLLGQKLSITSRKPQTTRHKIVGIDSREKSQAVFVDTPGMHKKE 100 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I K MN A+ + +L+LF++D++ T D + L+ ++P+I+V NK+DT Sbjct: 101 VRAINKMMNRAAHSALRDVNLVLFVVDAQKW-TQNDELVLEKLKNADMPVILVINKLDTF 159 Query: 125 IAQRNFYEIYS-----LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 + + ++F EIV +SA L I K + P + L+ I Sbjct: 160 ENKNEALPLIQERAKLMNFAEIVPVSALRGANLEHLRDTIEKYLPYQPPLYSLDQI 215 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/163 (28%), Positives = 82/163 (50%), Gaps = 8/163 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS-VSISWNWKNHPIEIFDTAGMRKP 264 +A+VGRPNVGKSTL+N LLG +T + TR V I K+ + DT GM K Sbjct: 41 VAIVGRPNVGKSTLMNHLLGQKLSITSRKPQTTRHKIVGIDSREKSQAV-FVDTPGMHK- 98 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 + ++ + + + ++R + ++DA + + D +++ + N V+L +NK Sbjct: 99 -KEVRAINKMMNRAAHSALRDVNLVLFVVDAQ-KWTQNDELVLEKLKNADMPVILVINKL 156 Query: 325 DMVSDKLNLLQDLRTKA-IKNLPQIGDIYINTISGRTGEGLDD 366 D +K L ++ +A + N +I + ++ + G E L D Sbjct: 157 DTFENKNEALPLIQERAKLMNFAEI--VPVSALRGANLEHLRD 197 >gi|195954205|gb|ACG58808.1| YphC [Helicobacter pylori] gi|195954207|gb|ACG58809.1| YphC [Helicobacter pylori] gi|195954223|gb|ACG58817.1| YphC [Helicobacter pylori] Length = 170 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISALIDAIL 163 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|125625274|ref|YP_001033757.1| tRNA modification GTPase TrmE [Lactococcus lactis subsp. cremoris MG1363] gi|205415771|sp|A2RP37|MNME_LACLM RecName: Full=tRNA modification GTPase mnmE gi|124494082|emb|CAL99083.1| tRNA modification GTPase TrmE [Lactococcus lactis subsp. cremoris MG1363] gi|300072084|gb|ADJ61484.1| tRNA modification GTPase TrmE [Lactococcus lactis subsp. cremoris NZ9000] Length = 455 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 51/162 (31%), Positives = 95/162 (58%), Gaps = 11/162 (6%) Query: 187 ENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISW 246 EN+ S K K + + L+ A++GRPNVGKS+L+N+LL + + +G TRD ++ Sbjct: 207 ENLLSTAKRG-KILREGLKTAIIGRPNVGKSSLLNQLLREEKAIVTDIAGTTRDVITEFA 265 Query: 247 NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRI 306 N P+E+ DTAG+R+ + E++ +++S +++ + +++LDA++ +DL + Sbjct: 266 NIGGVPLELVDTAGIRETDDLVEAI---GIERSKKALAEADLVLLVLDASLELTDKDLEL 322 Query: 307 VDSVFNTGHAVVLALNKWDMVSDKLNLLQD----LRTKAIKN 344 ++ N V+ LNK D+ +KL++ Q +R A+KN Sbjct: 323 LELSKNANRIVL--LNKTDL-PEKLDINQISGDFIRISALKN 361 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 43/117 (36%), Positives = 70/117 (59%), Gaps = 3/117 (2%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N+L++++ A+V + G TRD + A I GV +VDTAGI + + Sbjct: 226 AIIGRPNVGKSSLLNQLLREEKAIVTDIAGTTRDVITEFANIGGVPLELVDTAGIRETDD 285 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 A + ++++ A+ EA L+L ++D+ +T D + KN I++ NK D Sbjct: 286 LVEAIGI-ERSKKALAEADLVLLVLDASLELTDKDLELLEL--SKNANRIVLLNKTD 339 >gi|332851054|ref|ZP_08433163.1| ribosome biogenesis GTPase Era [Acinetobacter baumannii 6013150] gi|332869697|ref|ZP_08438885.1| ribosome biogenesis GTPase Era [Acinetobacter baumannii 6013113] gi|332730218|gb|EGJ61543.1| ribosome biogenesis GTPase Era [Acinetobacter baumannii 6013150] gi|332732599|gb|EGJ63832.1| ribosome biogenesis GTPase Era [Acinetobacter baumannii 6013113] Length = 340 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 55/178 (30%), Positives = 88/178 (49%), Gaps = 6/178 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N L+ +K+++ P TR ++ G + VDT G+ + Sbjct: 40 VAIVGRPNVGKSTLMNHLLGQKLSITSRKPQTTRHKIIGIDSREKMQAVYVDTPGMHKKE 99 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I K MN A+ + +L+LF+ID+ T D + L+ ++P+I+V NK DT Sbjct: 100 VRAINKMMNRAAHSALRDVNLVLFVIDAHKW-TQNDDLVLEKLKNADMPVILVINKADTF 158 Query: 125 IAQRNFYEIYS-----LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 +R + ++F EIV +SA L I K + P + + I + Sbjct: 159 GDKREILPLIQERAKLMNFAEIVPVSALRGANLEHLSETIEKYLPYQPPLYSFDQITD 216 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 41/137 (29%), Positives = 71/137 (51%), Gaps = 5/137 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS-VSISWNWKNHPIEIFDTAGMRKP 264 +A+VGRPNVGKSTL+N LLG +T + TR + I K + + DT GM K Sbjct: 40 VAIVGRPNVGKSTLMNHLLGQKLSITSRKPQTTRHKIIGIDSREKMQAVYV-DTPGMHK- 97 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 + ++ + + + ++R + ++DA + DL +++ + N V+L +NK Sbjct: 98 -KEVRAINKMMNRAAHSALRDVNLVLFVIDAHKWTQNDDL-VLEKLKNADMPVILVINKA 155 Query: 325 DMVSDKLNLLQDLRTKA 341 D DK +L ++ +A Sbjct: 156 DTFGDKREILPLIQERA 172 >gi|122700695|emb|CAL87936.1| GTPase [Helicobacter pylori] Length = 170 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 53/164 (32%), Positives = 85/164 (51%), Gaps = 6/164 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 K+D + Y S + IS H+ G S L I + Sbjct: 123 KIDNDKEKERSYAFSSFGMPKSFNISVSHNRGISTLIDAILSVL 166 Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 51/171 (29%), Positives = 85/171 (49%), Gaps = 12/171 (7%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEIN 375 D +DK + R+ A + I+ R L D ++SVL +N Sbjct: 125 D--NDK----EKERSYAFSSFGMPKSFNISVSHNRGISTLIDAILSVLNLN 169 >gi|242255856|gb|ACS88912.1| GTPase [Helicobacter pylori] Length = 170 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 53/164 (32%), Positives = 85/164 (51%), Gaps = 6/164 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 K+D + Y S + IS H+ G S L I + Sbjct: 123 KIDNDKEKERSYAFSSFGMPKSFNISVSHNRGISALIDAILSVL 166 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 51/171 (29%), Positives = 86/171 (50%), Gaps = 12/171 (7%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEIN 375 D +DK + R+ A + I+ R L D ++SVL++N Sbjct: 125 D--NDK----EKERSYAFSSFGMPKSFNISVSHNRGISALIDAILSVLDLN 169 >gi|122702143|emb|CAL88262.1| GTPase [Helicobacter pylori] Length = 170 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLR--KKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFRKVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISTL 158 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFRKVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|312873279|ref|ZP_07733334.1| tRNA modification GTPase TrmE [Lactobacillus iners LEAF 2052A-d] gi|311091159|gb|EFQ49548.1| tRNA modification GTPase TrmE [Lactobacillus iners LEAF 2052A-d] Length = 461 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 58/176 (32%), Positives = 91/176 (51%), Gaps = 4/176 (2%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AIVG PNVGKS+L N L K++ A+V N G TRD L + G++ ++DTAGI + Sbjct: 228 AIVGRPNVGKSSLLNYLSKEEKAIVTNIAGTTRDTLEEYVSLKGILLKLIDTAGIRQTDD 287 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 + K ++++ AI E+ L+L LI+S +T D + + K II+ NK D ++ Sbjct: 288 I-VEKIGVERSKRAITESDLVLLLINSSEELTEEDQKLLELTQDK--KRIIILNKAD-QV 343 Query: 126 AQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 A+ +I + IV IS + L I +F Q + E++ N+R Sbjct: 344 AKITKKDIQKITDSPIVTISVLKKQNMTGLEEAIKSLFLQGIADSKSEVMVTNQRQ 399 Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 36/131 (27%), Positives = 74/131 (56%), Gaps = 5/131 (3%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + L A+VGRPNVGKS+L+N L + + + +G TRD++ + K +++ D Sbjct: 219 KVVRSGLATAIVGRPNVGKSSLLNYLSKEEKAIVTNIAGTTRDTLEEYVSLKGILLKLID 278 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ I E + V++S +++ + ++L++++ ++D ++++ Sbjct: 279 TAGIRQTDDIVEKI---GVERSKRAITESDLVLLLINSSEELTEEDQKLLE--LTQDKKR 333 Query: 318 VLALNKWDMVS 328 ++ LNK D V+ Sbjct: 334 IIILNKADQVA 344 >gi|292806564|gb|ADE42412.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 85/162 (52%), Gaps = 6/162 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 K+D + Y S + IS H+ G S L + + Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLR 164 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122701425|emb|CAL88102.1| GTPase [Helicobacter pylori] gi|122701427|emb|CAL88103.1| GTPase [Helicobacter pylori] Length = 170 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 53/164 (32%), Positives = 85/164 (51%), Gaps = 6/164 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 K+D + Y S + IS H+ G S L I + Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSVL 166 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 52/172 (30%), Positives = 85/172 (49%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D ++SVL +NK Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSVLNLNK 170 >gi|99905859|gb|ABF68624.1| YphC [Helicobacter pylori] Length = 170 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 54/167 (32%), Positives = 85/167 (50%), Gaps = 6/167 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDTLLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQK 166 K+D + Y S + IS H+ G S L I K Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAILDTLNLK 169 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD + +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGMAKDT 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|169632754|ref|YP_001706490.1| GTP-binding protein Era [Acinetobacter baumannii SDF] gi|260556583|ref|ZP_05828801.1| GTP-binding protein Era [Acinetobacter baumannii ATCC 19606] gi|169151546|emb|CAP00313.1| GTP-binding protein,16S rRNA-binding,ribosome-associated GTPase [Acinetobacter baumannii] gi|260409842|gb|EEX03142.1| GTP-binding protein Era [Acinetobacter baumannii ATCC 19606] Length = 342 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 55/178 (30%), Positives = 88/178 (49%), Gaps = 6/178 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N L+ +K+++ P TR ++ G + VDT G+ + Sbjct: 42 VAIVGRPNVGKSTLMNHLLGQKLSITSRKPQTTRHKIIGIDSREKMQAVYVDTPGMHKKE 101 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I K MN A+ + +L+LF+ID+ T D + L+ ++P+I+V NK DT Sbjct: 102 VRAINKMMNRAAHSALRDVNLVLFVIDAHKW-TQNDDLVLDKLKNADMPVILVINKADTF 160 Query: 125 IAQRNFYEIYS-----LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 +R + ++F EIV +SA L I K + P + + I + Sbjct: 161 GDKREILPLIQERAKLMNFAEIVPVSALRGANLEHLSETIEKYLPYQPPLYSFDQITD 218 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/137 (30%), Positives = 71/137 (51%), Gaps = 5/137 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS-VSISWNWKNHPIEIFDTAGMRKP 264 +A+VGRPNVGKSTL+N LLG +T + TR + I K + + DT GM K Sbjct: 42 VAIVGRPNVGKSTLMNHLLGQKLSITSRKPQTTRHKIIGIDSREKMQAVYV-DTPGMHK- 99 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 + ++ + + + ++R + ++DA + DL ++D + N V+L +NK Sbjct: 100 -KEVRAINKMMNRAAHSALRDVNLVLFVIDAHKWTQNDDL-VLDKLKNADMPVILVINKA 157 Query: 325 DMVSDKLNLLQDLRTKA 341 D DK +L ++ +A Sbjct: 158 DTFGDKREILPLIQERA 174 >gi|167630513|ref|YP_001681012.1| GTP-binding protein era [Heliobacterium modesticaldum Ice1] gi|226741216|sp|B0TAF1|ERA_HELMI RecName: Full=GTPase Era gi|167593253|gb|ABZ85001.1| GTP-binding protein era [Heliobacterium modesticaldum Ice1] Length = 299 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 57/174 (32%), Positives = 91/174 (52%), Gaps = 13/174 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYG--QAIINGVIFNIVDTAGIAD 62 I+I+G PNVGKSTL N+L+ KK+A++ + P TR+R+ G A IF +DT GI Sbjct: 9 ISIIGRPNVGKSTLMNQLIGKKVAIMSDKPQTTRNRIVGVLNAPKGQAIF--LDTPGIHK 66 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 K+ + + M + E LIL+++D+ + I+ L+ P+ +V NKMD Sbjct: 67 PKH-KLGEIMVTTARKTLGEVDLILYVVDASEEPGGGEQFISQMLKDIKTPVFLVVNKMD 125 Query: 123 TRIAQRNFYEI--YS--LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPL 172 T + +I YS + ++E++ +SA+ L +IF K P PL Sbjct: 126 TVSREEGLKKISQYSQMVAWQELIPVSAKEKTNLDRLKDLIFA----KLPEGPL 175 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 36/128 (28%), Positives = 61/128 (47%), Gaps = 3/128 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 I+++GRPNVGKSTL+N+L+G + + TR+ + N DT G+ KP Sbjct: 9 ISIIGRPNVGKSTLMNQLIGKKVAIMSDKPQTTRNRIVGVLNAPKGQAIFLDTPGIHKPK 68 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + T +K++ V + + ++DA+ + I + + V L +NK D Sbjct: 69 HKLGEIMVTTARKTLGEV---DLILYVVDASEEPGGGEQFISQMLKDIKTPVFLVVNKMD 125 Query: 326 MVSDKLNL 333 VS + L Sbjct: 126 TVSREEGL 133 >gi|122702703|emb|CAL88541.1| GTPase [Helicobacter pylori] gi|292806446|gb|ADE42353.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 53/164 (32%), Positives = 86/164 (52%), Gaps = 6/164 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 K+D + Y S + IS H+ G S L I ++ Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISTLIDAILRVL 166 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122702881|emb|CAL88630.1| GTPase [Helicobacter pylori] Length = 170 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 85/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + +IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFDISVSHNRGISTLIDAIL 163 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|317453521|emb|CBL87870.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERVYAFSSFGIPKSFNISVSHNRGISALIDAIL 163 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|163816524|ref|ZP_02207888.1| hypothetical protein COPEUT_02714 [Coprococcus eutactus ATCC 27759] gi|158448224|gb|EDP25219.1| hypothetical protein COPEUT_02714 [Coprococcus eutactus ATCC 27759] Length = 299 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 76/256 (29%), Positives = 123/256 (48%), Gaps = 32/256 (12%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIING----VIFNIVDTAGI 60 ++I+G PNVGKSTL NRL+ +K+A+ N TR+R+ Q + +IF +DT GI Sbjct: 10 VSIIGRPNVGKSTLMNRLIGQKIAITSNKAQTTRNRI--QTVYTSDKGQIIF--LDTPGI 65 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 KN + + M E ++E ++L+++++ I + I L+ PII+V NK Sbjct: 66 NRAKN-KLGEYMLKVAESTLDEVDVVLWIVEATTFIGAGERYIIEQLQHVKTPIIVVVNK 124 Query: 121 MDTRIAQRNFYEIY----SLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIE 176 +D + F I + DF EIV +SA T EL I K P P E Sbjct: 125 IDNVEEGKVFEAINTYKDACDFAEIVPVSALKGKNTDELIDTIMKYL----PYGPQYYDE 180 Query: 177 NNKRNEESPKENITSE--GKSSVKNISK--PLRIAVV-----GRPNVG----KSTLINRL 223 + ++ P+ I +E + +++ + K P IAVV RPN G +T+I Sbjct: 181 DTVTDQ--PERQIVAELIREQALRQLDKEVPHGIAVVIDSMKERPNGGIIDIDATIICER 238 Query: 224 LGYNRLLTGSQSGITR 239 + ++ G Q + + Sbjct: 239 DSHKGIIIGKQGAMLK 254 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 31/124 (25%), Positives = 66/124 (53%), Gaps = 3/124 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 ++++GRPNVGKSTL+NRL+G +T +++ TR+ + + I DT G+ + Sbjct: 10 VSIIGRPNVGKSTLMNRLIGQKIAITSNKAQTTRNRIQTVYTSDKGQIIFLDTPGI---N 66 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 R L + +K + ++ + + +++AT + I++ + + +++ +NK D Sbjct: 67 RAKNKLGEYMLKVAESTLDEVDVVLWIVEATTFIGAGERYIIEQLQHVKTPIIVVVNKID 126 Query: 326 MVSD 329 V + Sbjct: 127 NVEE 130 >gi|122702649|emb|CAL88514.1| GTPase [Helicobacter pylori] Length = 170 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 53/164 (32%), Positives = 85/164 (51%), Gaps = 6/164 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 K+D + Y S + IS H+ G S L I + Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISTLIDAILSVL 166 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 51/172 (29%), Positives = 85/172 (49%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D ++SVL +N+ Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISTLIDAILSVLNLNQ 170 >gi|122701723|emb|CAL88250.1| GTPase [Helicobacter pylori] Length = 170 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 52/161 (32%), Positives = 85/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + ++NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIVLNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + +S H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNVSVSHNRGISTLIDAIL 163 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIVLNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|332666380|ref|YP_004449168.1| GTP-binding protein Era-like-protein [Haliscomenobacter hydrossis DSM 1100] gi|332335194|gb|AEE52295.1| GTP-binding protein Era-like-protein [Haliscomenobacter hydrossis DSM 1100] Length = 298 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 56/193 (29%), Positives = 91/193 (47%), Gaps = 22/193 (11%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIV--DTAGIAD 62 I I+G PNVGKSTL N LV ++M+++ N P TR R+ G I++G F +V DT G+ D Sbjct: 7 INIIGHPNVGKSTLMNALVGERMSIITNKPQTTRHRIIG--ILSGEDFQMVLSDTPGVVD 64 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + + MN + +A L+L + D DH + +++ +P+ +V NK+D Sbjct: 65 KPAYKMHQAMNSFVQSTFEDADLMLLVTDVLETYPAEDHLLAQLRKQQEVPMFVVLNKID 124 Query: 123 ----TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 ++AQ + L ++ ISA T ++ K+ P P Sbjct: 125 LVDEEKLAQLQQFWAEQLPQATLIPISALKKTNT----DLLLNTLKENLPEGP------- 173 Query: 179 KRNEESPKENITS 191 E PK+ +T Sbjct: 174 ---EYYPKDQLTD 183 >gi|292806650|gb|ADE42455.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 52/154 (33%), Positives = 83/154 (53%), Gaps = 6/154 (3%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + ++NG ++DT G+A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIVLNGYEVELLDTGGMA-- 66 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSNKM 121 K+ ++K++ A + LIL+++D K+ P D + F + K N +V NK+ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVINKI 124 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 D + Y S + IS H+ G S L Sbjct: 125 DNDKEKERAYAFSSFGMPKSFNISVSHNRGISAL 158 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 83/172 (48%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD + +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIVLNGYEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D +++ L +NK Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLNALNLNK 170 >gi|122701557|emb|CAL88168.1| GTPase [Helicobacter pylori] gi|242255830|gb|ACS88899.1| GTPase [Helicobacter pylori] Length = 170 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 53/164 (32%), Positives = 85/164 (51%), Gaps = 6/164 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 K+D + Y S + IS H+ G S L I + Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSVL 166 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 51/172 (29%), Positives = 85/172 (49%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D ++SVL +N+ Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSVLNLNQ 170 >gi|294651021|ref|ZP_06728361.1| GTP-binding protein era family protein [Acinetobacter haemolyticus ATCC 19194] gi|292823122|gb|EFF81985.1| GTP-binding protein era family protein [Acinetobacter haemolyticus ATCC 19194] Length = 341 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 54/176 (30%), Positives = 88/176 (50%), Gaps = 6/176 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N L+ +K+++ P TR ++ G VDT G+ + Sbjct: 41 VAIVGRPNVGKSTLMNHLLGQKLSITSRKPQTTRHKIVGIDSREKSQAVFVDTPGMHKKE 100 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I K MN A+ + +L+LF++D++ T D + L+ ++P+I+V NK+DT Sbjct: 101 VRAINKMMNRAAHSALRDVNLVLFVVDAQKW-TQNDELVLEKLKNADMPVILVINKLDTF 159 Query: 125 IAQRNFYEIYS-----LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 + + ++F EIV +SA L I K + P + L+ I Sbjct: 160 ENKNEALPLIQERAKLMNFAEIVPVSALRGANLEHLRDTIEKYLPYQPPLYSLDQI 215 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/163 (28%), Positives = 82/163 (50%), Gaps = 8/163 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS-VSISWNWKNHPIEIFDTAGMRKP 264 +A+VGRPNVGKSTL+N LLG +T + TR V I K+ + DT GM K Sbjct: 41 VAIVGRPNVGKSTLMNHLLGQKLSITSRKPQTTRHKIVGIDSREKSQAV-FVDTPGMHK- 98 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 + ++ + + + ++R + ++DA + + D +++ + N V+L +NK Sbjct: 99 -KEVRAINKMMNRAAHSALRDVNLVLFVVDAQ-KWTQNDELVLEKLKNADMPVILVINKL 156 Query: 325 DMVSDKLNLLQDLRTKA-IKNLPQIGDIYINTISGRTGEGLDD 366 D +K L ++ +A + N +I + ++ + G E L D Sbjct: 157 DTFENKNEALPLIQERAKLMNFAEI--VPVSALRGANLEHLRD 197 >gi|122702445|emb|CAL88413.1| GTPase [Helicobacter pylori] Length = 170 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG I+DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVEILDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALVDAIL 163 Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 40/121 (33%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +EI DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVEILDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|317453529|emb|CBL87874.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 85/162 (52%), Gaps = 6/162 (3%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 9 TIAILGRPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA-- 66 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSNKM 121 K+ ++K++ A + LIL+++D K+ P D + F + K N +V NK+ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVINKI 124 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 D + Y S + IS H+ G S L I ++ Sbjct: 125 DNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAILRVL 166 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 51/172 (29%), Positives = 83/172 (48%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++GRPNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGRPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D ++ VL +NK Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILRVLNLNK 170 >gi|242255900|gb|ACS88934.1| GTPase [Helicobacter pylori] Length = 170 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 53/164 (32%), Positives = 86/164 (52%), Gaps = 6/164 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 K+D + Y S + IS H+ G S L I ++ Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAILRVL 166 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 84/172 (48%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D ++ VL++NK Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILRVLDLNK 170 >gi|224534206|ref|ZP_03674784.1| tRNA modification GTPase TrmE [Borrelia spielmanii A14S] gi|224514308|gb|EEF84624.1| tRNA modification GTPase TrmE [Borrelia spielmanii A14S] Length = 464 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 44/122 (36%), Positives = 72/122 (59%), Gaps = 2/122 (1%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+ + G+ N GKS+LFN +KK ++V ++PG TRD + ++GV+FNI DTAG+ D Sbjct: 224 TLVLAGSVNAGKSSLFNLFLKKDRSIVSSYPGTTRDYIEASFELDGVLFNIFDTAGLRDA 283 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 N + + +++ I EA L++++ID + +T D K N I+ V NK+D Sbjct: 284 DNF-VERLGIEKSNSLIKEASLVIYVIDVSSDLTRDDLLFID-SNKSNAKILFVLNKIDL 341 Query: 124 RI 125 +I Sbjct: 342 KI 343 Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 58/187 (31%), Positives = 90/187 (48%), Gaps = 19/187 (10%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 + I + + + G N GKS+L N L +R + S G TRD + S+ IFD Sbjct: 217 EKIDHGITLVLAGSVNAGKSSLFNLFLKKDRSIVSSYPGTTRDYIEASFELDGVLFNIFD 276 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHA- 316 TAG+R E L ++KS ++ I ++D + + DL +DS N +A Sbjct: 277 TAGLRDADNFVERL---GIEKSNSLIKEASLVIYVIDVSSDLTRDDLLFIDS--NKSNAK 331 Query: 317 VVLALNKWDMVSDK-------LNLL--QDLRTKAIKNLPQIGDIY--INT-ISGRTGE-G 363 ++ LNK D+ +K N+L +L +IK+L I +Y I T IS E G Sbjct: 332 ILFVLNKIDLKINKSTEEFVRSNVLNSSNLIMISIKDLEGIDILYDKIKTLISYEKVEIG 391 Query: 364 LDDLMVS 370 LDD+++S Sbjct: 392 LDDIIIS 398 >gi|218781247|ref|YP_002432565.1| GTP-binding protein Era [Desulfatibacillum alkenivorans AK-01] gi|218762631|gb|ACL05097.1| GTP-binding protein Era [Desulfatibacillum alkenivorans AK-01] Length = 297 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 53/171 (30%), Positives = 87/171 (50%), Gaps = 5/171 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 I ++GAPNVGKSTL N+++ +K+++ + P TR+R+ G ++DT GI K Sbjct: 10 IGMIGAPNVGKSTLLNQMLGEKVSITSSKPQTTRNRILGVVHREKAQLVMLDTPGIHSAK 69 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + K M D + + LI+F++D+ + L K+ +P+I+V NK+D Sbjct: 70 S-PLNKHMVDVAMQCMGDVDLIMFVVDASKPDPNSERLALKGLAKQKMPVILVLNKIDLI 128 Query: 125 IAQRNFYEIYSL----DFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHP 171 + I L DFK IV +SAE EL +++ + Q P P Sbjct: 129 KKETLLPLIAKLEPLADFKAIVPVSAETGEQVEELIAILEEQLPQGPPFFP 179 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 45/169 (26%), Positives = 82/169 (48%), Gaps = 11/169 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 I ++G PNVGKSTL+N++LG +T S+ TR+ + + + + + DT G+ Sbjct: 10 IGMIGAPNVGKSTLLNQMLGEKVSITSSKPQTTRNRILGVVHREKAQLVMLDTPGIHSAK 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + V +MQ + + + ++DA+ P + + + V+L LNK D Sbjct: 70 ---SPLNKHMVDVAMQCMGDVDLIMFVVDASKPDPNSERLALKGLAKQKMPVILVLNKID 126 Query: 326 MVSDKLNLLQDLRTKAIKNLPQIGDI-YINTISGRTGEGLDDLMVSVLE 373 ++ + L I L + D I +S TGE +++L +++LE Sbjct: 127 LIKKETLL------PLIAKLEPLADFKAIVPVSAETGEQVEEL-IAILE 168 >gi|291529193|emb|CBK94779.1| tRNA modification GTPase trmE [Eubacterium rectale M104/1] Length = 458 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 50/157 (31%), Positives = 84/157 (53%), Gaps = 4/157 (2%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 I+G PN GKS+L N LV A+V + G TRD L Q I G+ N+VDTAGI ++ Sbjct: 226 IIGKPNAGKSSLLNVLVGSDRAIVTDIAGTTRDVLEEQINIGGITLNLVDTAGIRSTEDV 285 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 + E A NEA LI++++DS D+ I +F++ K I++ + + ++++ Sbjct: 286 VEKIGVKKAMEHA-NEADLIIYVVDSSVVFDDNDYDIINFIKDKKAVILLNKSDLASKVS 344 Query: 127 QRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 + ++ K ++ +SA+ G EL I ++F Sbjct: 345 ADDIKKLVD---KTVISVSAKESSGIDELSDTIKEMF 378 Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 86/167 (51%), Gaps = 15/167 (8%) Query: 208 VVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRI 267 ++G+PN GKS+L+N L+G +R + +G TRD + N + + DTAG+R + Sbjct: 226 IIGKPNAGKSSLLNVLVGSDRAIVTDIAGTTRDVLEEQINIGGITLNLVDTAGIRSTEDV 285 Query: 268 TESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMV 327 E + VKK+M+ + I ++D+++ F+ D I++ F V+ LNK D+ Sbjct: 286 VEKI---GVKKAMEHANEADLIIYVVDSSVVFDDNDYDIIN--FIKDKKAVILLNKSDLA 340 Query: 328 SDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEI 374 S + ++ ++ D + ++S + G+D+L ++ E+ Sbjct: 341 S----------KVSADDIKKLVDKTVISVSAKESSGIDELSDTIKEM 377 >gi|122700723|emb|CAL87950.1| GTPase [Helicobacter pylori] Length = 170 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 53/164 (32%), Positives = 85/164 (51%), Gaps = 6/164 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 K+D + Y S + IS H+ G S L I + Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSVL 166 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 51/172 (29%), Positives = 86/172 (50%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D ++SVL++N+ Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSVLDLNQ 170 >gi|169832370|ref|YP_001718352.1| tRNA modification GTPase TrmE [Candidatus Desulforudis audaxviator MP104C] gi|205829147|sp|B1I6S2|MNME_DESAP RecName: Full=tRNA modification GTPase mnmE gi|169639214|gb|ACA60720.1| tRNA modification GTPase TrmE [Candidatus Desulforudis audaxviator MP104C] Length = 461 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 76/135 (56%), Gaps = 5/135 (3%) Query: 192 EGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNH 251 EG + + L +A+VG+PNVGKS+L+N LL R + G TRD + + N + Sbjct: 212 EGAEAGRVYRDGLGVAIVGKPNVGKSSLLNALLREKRAIVTDVPGTTRDVIEETVNIRGL 271 Query: 252 PIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVF 311 P+ + DTAG+R+ + +++E+ V ++ +V + +V+LDA E +D R++ Sbjct: 272 PVRLLDTAGLRETA---DTVERLGVARTRDAVAGADMVLVVLDAASGLEDEDRRVL--AL 326 Query: 312 NTGHAVVLALNKWDM 326 G +V+ +NK D+ Sbjct: 327 ARGKPLVVLINKVDL 341 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 55/206 (26%), Positives = 102/206 (49%), Gaps = 4/206 (1%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKS+L N L+++K A+V + PG TRD + I G+ ++DTAG+ + Sbjct: 226 VAIVGKPNVGKSSLLNALLREKRAIVTDVPGTTRDVIEETVNIRGLPVRLLDTAGLRETA 285 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + ++ + +T A+ A ++L ++D+ +G+ D + + R K P++++ NK+D Sbjct: 286 D-TVERLGVARTRDAVAGADMVLVVLDAASGLEDEDRRVLALARGK--PLVVLINKVDLA 342 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK-IFKQKYPNHPLEMIENNKRNEE 183 A + + +L ++ + G +EL I + + H +I N + Sbjct: 343 PAGIDPDAVRALVDGPVLMAAIIEGRGLNELEETIAGLVLGGRVTGHHTVLISNVRHQHA 402 Query: 184 SPKENITSEGKSSVKNISKPLRIAVV 209 + E S PL +AV+ Sbjct: 403 LEQAGRYLEEARSALVSGMPLEMAVI 428 >gi|122702157|emb|CAL88269.1| GTPase [Helicobacter pylori] Length = 170 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 53/164 (32%), Positives = 85/164 (51%), Gaps = 6/164 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 K+D + Y S + IS H+ G S L + + Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISALIDAVLSVL 166 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 86/172 (50%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKTNPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D ++SVL++N+ Sbjct: 125 D--NDK----EKERAYAFSSFGIPKSFNISVSHNRGISALIDAVLSVLDLNQ 170 >gi|122702655|emb|CAL88517.1| GTPase [Helicobacter pylori] Length = 170 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 85/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + ++NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIVLNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISVLIDAIL 163 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIVLNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122700665|emb|CAL87921.1| GTPase [Helicobacter pylori] Length = 170 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREIFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERIYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ +F T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREIFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|312872669|ref|ZP_07732734.1| tRNA modification GTPase TrmE [Lactobacillus iners LEAF 2062A-h1] gi|311091711|gb|EFQ50090.1| tRNA modification GTPase TrmE [Lactobacillus iners LEAF 2062A-h1] Length = 461 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 58/176 (32%), Positives = 91/176 (51%), Gaps = 4/176 (2%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AIVG PNVGKS+L N L K++ A+V N G TRD L + G++ ++DTAGI + Sbjct: 228 AIVGRPNVGKSSLLNYLSKEEKAIVTNIAGTTRDTLEEYVSLKGILLKLIDTAGIRQTDD 287 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 + K ++++ AI E+ L+L LI+S +T D + + K II+ NK D ++ Sbjct: 288 I-VEKIGVERSKRAITESDLVLLLINSSEELTEEDQKLLELTQDK--KRIIILNKAD-QV 343 Query: 126 AQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 A+ +I + IV IS + L I +F Q + E++ N+R Sbjct: 344 AKITKKDIQKITDSPIVTISVLKKQNMTGLEEAIKSLFLQGITDSKSEVMVTNQRQ 399 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 36/131 (27%), Positives = 74/131 (56%), Gaps = 5/131 (3%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + L A+VGRPNVGKS+L+N L + + + +G TRD++ + K +++ D Sbjct: 219 KVVRSGLATAIVGRPNVGKSSLLNYLSKEEKAIVTNIAGTTRDTLEEYVSLKGILLKLID 278 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ I E + V++S +++ + ++L++++ ++D ++++ Sbjct: 279 TAGIRQTDDIVEKI---GVERSKRAITESDLVLLLINSSEELTEEDQKLLE--LTQDKKR 333 Query: 318 VLALNKWDMVS 328 ++ LNK D V+ Sbjct: 334 IIILNKADQVA 344 >gi|292806430|gb|ADE42345.1| GTP-binding protein-like protein [Helicobacter pylori] gi|317452821|emb|CBL87846.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 84/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N+ +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINLNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISAL 158 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINLNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|262038122|ref|ZP_06011523.1| tRNA modification GTPase TrmE [Leptotrichia goodfellowii F0264] gi|261747846|gb|EEY35284.1| tRNA modification GTPase TrmE [Leptotrichia goodfellowii F0264] Length = 455 Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 43/120 (35%), Positives = 69/120 (57%), Gaps = 3/120 (2%) Query: 207 AVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSR 266 +VG+PNVGKSTL+N LL R + G TRD + N K P+ + DTAG+RK Sbjct: 222 VIVGKPNVGKSTLLNSLLKEERAIVTHIPGTTRDIIEEIINIKGIPLVLVDTAGIRKTED 281 Query: 267 ITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 I E++ V+KS Q + + +++LDA+ EK+D+ +++ + ++ LNK D+ Sbjct: 282 IVENI---GVEKSKQFIEKADLILLVLDASKELEKEDIEVIEKIKKNNKKTIVLLNKIDL 338 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 59/178 (33%), Positives = 100/178 (56%), Gaps = 8/178 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 IVG PNVGKSTL N L+K++ A+V + PG TRD + I G+ +VDTAGI K Sbjct: 222 VIVGKPNVGKSTLLNSLLKEERAIVTHIPGTTRDIIEEIINIKGIPLVLVDTAGIR--KT 279 Query: 66 CSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I + + ++++ I +A LIL ++D+ + D + ++K N I++ NK+D Sbjct: 280 EDIVENIGVEKSKQFIEKADLILLVLDASKELEKEDIEVIEKIKKNNKKTIVLLNKIDL- 338 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK-IFKQKYPNHPLEMIENNKRN 181 +R ++ + D + I+EISA+ ++G E+ I+ I ++ N ++I N R+ Sbjct: 339 --ERKI-DLSNYDLENILEISAKDNIGIDEMEEKIYSYIVEEDVENTSEKLIITNIRH 393 >gi|219685816|ref|ZP_03540625.1| tRNA modification GTPase TrmE [Borrelia garinii Far04] gi|219672649|gb|EED29679.1| tRNA modification GTPase TrmE [Borrelia garinii Far04] Length = 464 Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 43/122 (35%), Positives = 72/122 (59%), Gaps = 2/122 (1%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+ + G+ NVGKS+LFN +KK ++V ++PG TRD + ++G++FN+ DTAG+ D Sbjct: 224 TLVLAGSVNVGKSSLFNMFLKKDRSIVSSYPGTTRDYIEASFELDGILFNLFDTAGLRDA 283 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 N + + +++ I EA L++++ID + +T D K N I+ V NK+D Sbjct: 284 DNF-VERLGIEKSNSLIKEASLVIYVIDVSSNLTREDFLFID-SNKSNSKILFVLNKIDL 341 Query: 124 RI 125 I Sbjct: 342 NI 343 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 55/184 (29%), Positives = 87/184 (47%), Gaps = 17/184 (9%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 I + + + G NVGKS+L N L +R + S G TRD + S+ +FDTA Sbjct: 219 IDHGVTLVLAGSVNVGKSSLFNMFLKKDRSIVSSYPGTTRDYIEASFELDGILFNLFDTA 278 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R E L ++KS ++ I ++D + ++D +DS + ++ Sbjct: 279 GLRDADNFVERL---GIEKSNSLIKEASLVIYVIDVSSNLTREDFLFIDSN-KSNSKILF 334 Query: 320 ALNKWDMVSDK-------LNLL--QDLRTKAIKNLPQIGDIY--INT-ISGRTGE-GLDD 366 LNK D+ +K N+L +L + KNL I +Y I T IS E GLDD Sbjct: 335 VLNKIDLNINKSTEEFVRSNVLNSSNLIMISTKNLEGIDILYDKIKTLISYEKVEIGLDD 394 Query: 367 LMVS 370 +++S Sbjct: 395 IIIS 398 >gi|122702845|emb|CAL88612.1| GTPase [Helicobacter pylori] Length = 170 Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/171 (28%), Positives = 83/171 (48%), Gaps = 12/171 (7%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKTNPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEIN 375 D +DK + R A + I+ R L D ++S L +N Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSALNLN 169 >gi|122701421|emb|CAL88100.1| GTPase [Helicobacter pylori] gi|122701485|emb|CAL88132.1| GTPase [Helicobacter pylori] Length = 170 Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL K+++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 84/172 (48%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D ++S L +N+ Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSALNLNQ 170 >gi|304318133|ref|YP_003853278.1| tRNA modification GTPase TrmE [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302779635|gb|ADL70194.1| tRNA modification GTPase TrmE [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 458 Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 58/171 (33%), Positives = 90/171 (52%), Gaps = 21/171 (12%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 I + L ++G+PNVGKS+L+N LL NR + G TRD + N K PI++ DTA Sbjct: 219 IREGLNTVIIGKPNVGKSSLLNALLNENRAIVTDIPGTTRDIIEEYLNIKGIPIKLIDTA 278 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD---LRIVDSVFNTGHA 316 G+R + E + V++S +++ + I + D + P EK+D LRI+D Sbjct: 279 GIRDTDELVEKI---GVERSKEAINKADLIIFVFDNSRPLEKEDYEILRIIDD-----KN 330 Query: 317 VVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDL 367 V+ LNK D+ S + L ++R + +N YI ++S T EG D L Sbjct: 331 VLYVLNKIDLPS--MIDLDEIRRISNEN-------YI-SLSSVTKEGFDAL 371 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 47/140 (33%), Positives = 76/140 (54%), Gaps = 13/140 (9%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 I+G PNVGKS+L N L+ + A+V + PG TRD + I G+ ++DTAGI D Sbjct: 227 IIGKPNVGKSSLLNALLNENRAIVTDIPGTTRDIIEEYLNIKGIPIKLIDTAGIRDTDEL 286 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT--- 123 + K ++++ AIN+A LI+F+ D+ + D+ I + KN ++ V NK+D Sbjct: 287 -VEKIGVERSKEAINKADLIIFVFDNSRPLEKEDYEILRIIDDKN--VLYVLNKIDLPSM 343 Query: 124 -------RIAQRNFYEIYSL 136 RI+ N+ + S+ Sbjct: 344 IDLDEIRRISNENYISLSSV 363 >gi|122702635|emb|CAL88507.1| GTPase [Helicobacter pylori] Length = 170 Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT GIA Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGIA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISTLIDAIL 163 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT G+ K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGIAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122700721|emb|CAL87949.1| GTPase [Helicobacter pylori] Length = 170 Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/164 (32%), Positives = 85/164 (51%), Gaps = 6/164 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 K+D + Y S + IS H+ G S L I + Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISTLIDAILSVL 166 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 51/172 (29%), Positives = 86/172 (50%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D ++SVL++N+ Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISTLIDAILSVLDLNQ 170 >gi|154499098|ref|ZP_02037476.1| hypothetical protein BACCAP_03090 [Bacteroides capillosus ATCC 29799] gi|150271938|gb|EDM99164.1| hypothetical protein BACCAP_03090 [Bacteroides capillosus ATCC 29799] Length = 458 Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 57/182 (31%), Positives = 94/182 (51%), Gaps = 2/182 (1%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 AIVG PN GKS+L N LV A+V + PG TRD + + + GV+ ++DTAG+ D Sbjct: 223 CAIVGRPNAGKSSLLNALVGYDRAIVTDIPGTTRDTIEEKCRLGGVLLRLIDTAGLRDTT 282 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + ++ + +++ A+ EA L L LID + G+T D AI R +I+V K D Sbjct: 283 D-TVEQLGVERSRAALAEAELALVLIDPQGGVTAEDLAILEQARAAAEKVIVVLTKSDLD 341 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 ++ + +V +SA+ G EL + + +F Q N E++ N ++ E + Sbjct: 342 RGPCIGLTLWGENCPPVVSLSAKTGEGLEELEAAVAALFPQGEENWG-ELLTNARQAEAA 400 Query: 185 PK 186 + Sbjct: 401 GR 402 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 52/166 (31%), Positives = 86/166 (51%), Gaps = 12/166 (7%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 A+VGRPN GKS+L+N L+GY+R + G TRD++ + + DTAG+R Sbjct: 223 CAIVGRPNAGKSSLLNALVGYDRAIVTDIPGTTRDTIEEKCRLGGVLLRLIDTAGLRD-- 280 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 T+++EQ V++S ++ E +VL+D +DL I++ V++ L K D Sbjct: 281 -TTDTVEQLGVERSRAALAEAELALVLIDPQGGVTAEDLAILEQARAAAEKVIVVLTKSD 339 Query: 326 MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSV 371 + L T +N P + ++S +TGEGL++L +V Sbjct: 340 LDRGPCIGL----TLWGENCPP-----VVSLSAKTGEGLEELEAAV 376 >gi|122702657|emb|CAL88518.1| GTPase [Helicobacter pylori] Length = 170 Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/164 (32%), Positives = 85/164 (51%), Gaps = 6/164 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREIFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 K+D + Y S + IS H+ G S L I + Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISTLIDAILSVL 166 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ +F L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREIFKINPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D ++SVL +N+ Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISTLIDAILSVLNLNQ 170 >gi|122702135|emb|CAL88258.1| GTPase [Helicobacter pylori] Length = 170 Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 85/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y +S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFFSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122702567|emb|CAL88473.1| GTPase [Helicobacter pylori] Length = 170 Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/162 (33%), Positives = 85/162 (52%), Gaps = 6/162 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 K+D + Y S + IS H+ G S L I + Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISALIDAILR 164 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122701449|emb|CAL88114.1| GTPase [Helicobacter pylori] Length = 170 Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 85/162 (52%), Gaps = 6/162 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 K+D + Y S + IS H+ G S L I + Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAILR 164 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122701405|emb|CAL88092.1| GTPase [Helicobacter pylori] Length = 170 Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL K+++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|218437570|ref|YP_002375899.1| tRNA modification GTPase TrmE [Cyanothece sp. PCC 7424] gi|218170298|gb|ACK69031.1| tRNA modification GTPase TrmE [Cyanothece sp. PCC 7424] Length = 458 Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 84/156 (53%), Gaps = 6/156 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKS+L N + A+V + PG TRD + Q ++ G+ ++DTAGI + + Sbjct: 226 VAIVGRPNVGKSSLLNAWSRSDRAIVTDLPGTTRDVVESQLVVGGIPIQVLDTAGIRETQ 285 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + K +++ A A LIL ID++ G T D I + + K+ P+I++ NK D Sbjct: 286 D-RVEKIGVERSRQAAQRADLILLTIDAQTGWTGEDEEI--YQQVKHRPLILIINKTD-- 340 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 +A + Y + +IV A G +L +I Sbjct: 341 LASADTIN-YPWEITQIVTTVAAKSEGIEDLEQMIL 375 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 42/130 (32%), Positives = 72/130 (55%), Gaps = 6/130 (4%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 L++A+VGRPNVGKS+L+N +R + G TRD V PI++ DTAG+R+ Sbjct: 224 LKVAIVGRPNVGKSSLLNAWSRSDRAIVTDLPGTTRDVVESQLVVGGIPIQVLDTAGIRE 283 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 + +E+ V++S Q+ + + ++ +DA + +D I V + ++L +NK Sbjct: 284 TQ---DRVEKIGVERSRQAAQRADLILLTIDAQTGWTGEDEEIYQQVKH--RPLILIINK 338 Query: 324 WDMVS-DKLN 332 D+ S D +N Sbjct: 339 TDLASADTIN 348 >gi|122700881|emb|CAL88029.1| GTPase [Helicobacter pylori] Length = 170 Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/159 (33%), Positives = 83/159 (52%), Gaps = 6/159 (3%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGMA-- 66 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSNKM 121 K+ ++K++ A + LIL+++D K+ P D I F + K N +V NK+ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVINKI 124 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 D + Y S + IS H+ G S L I Sbjct: 125 DNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD + +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|317453537|emb|CBL87878.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 84/172 (48%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKTNPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D ++S L +N+ Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSALNLNQ 170 >gi|122701533|emb|CAL88156.1| GTPase [Helicobacter pylori] Length = 170 Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/164 (32%), Positives = 86/164 (52%), Gaps = 6/164 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 K+D + Y S + IS H+ G S L I ++ Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISALIDAILRVL 166 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 83/172 (48%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D ++ VL +NK Sbjct: 125 D--NDK----EKERAYAFSSFGIPKSFNISVSHNRGISALIDAILRVLNLNK 170 >gi|292806576|gb|ADE42418.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/162 (33%), Positives = 85/162 (52%), Gaps = 6/162 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 K+D + Y S + IS H+ G S L I + Sbjct: 123 KIDNDKEKEQSYAFSSFGMPKSFNISVSHNRGISALIDAILR 164 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|163814995|ref|ZP_02206382.1| hypothetical protein COPEUT_01148 [Coprococcus eutactus ATCC 27759] gi|158449678|gb|EDP26673.1| hypothetical protein COPEUT_01148 [Coprococcus eutactus ATCC 27759] Length = 459 Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/176 (30%), Positives = 99/176 (56%), Gaps = 4/176 (2%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PN GKS+L N V + A+V + G TRD L + G+ NI+DTAGI + + Sbjct: 227 IVGKPNAGKSSLLNMFVGEDRAIVTDMAGTTRDTLSEIVNVRGITLNIIDTAGIRETDDL 286 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 + K D+ ++++A L+L+++D + D I +R KN+ +II + ++ +I Sbjct: 287 -VEKIGVDKAIKSVDKADLVLYVVDGSVELDENDQRIIEKIRDKNVIVIINKSDLEIKI- 344 Query: 127 QRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 +R+ Y +D E++++SA G+ EL+ ++ K+F + ++ ++ N R++ Sbjct: 345 ERDAICRY-ID-AEVIQLSAMTGDGSEELYDMLNKMFFEGSLSYNDQLYITNARHK 398 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 46/170 (27%), Positives = 94/170 (55%), Gaps = 15/170 (8%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K +S+ + +VG+PN GKS+L+N +G +R + +G TRD++S N + + I D Sbjct: 217 KILSEGINTVIVGKPNAGKSSLLNMFVGEDRAIVTDMAGTTRDTLSEIVNVRGITLNIID 276 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ + E + V K+++SV + + ++D ++ ++ D RI++ + + V Sbjct: 277 TAGIRETDDLVEKI---GVDKAIKSVDKADLVLYVVDGSVELDENDQRIIEKIRDKN--V 331 Query: 318 VLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDL 367 ++ +NK D+ ++ + +D + I D + +S TG+G ++L Sbjct: 332 IVIINKSDL---EIKIERDAICRYI-------DAEVIQLSAMTGDGSEEL 371 >gi|122702355|emb|CAL88368.1| GTPase [Helicobacter pylori] Length = 170 Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/156 (34%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ N G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSNFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKAFNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERSYAFSSFGAPKSFNISVSHNRGISAL 158 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 66/121 (54%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T + +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSNFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF T L +NK Sbjct: 70 LLSKEIKAFNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|293374951|ref|ZP_06621247.1| tRNA modification GTPase TrmE [Turicibacter sanguinis PC909] gi|325844341|ref|ZP_08168117.1| tRNA modification GTPase TrmE [Turicibacter sp. HGF1] gi|292646428|gb|EFF64442.1| tRNA modification GTPase TrmE [Turicibacter sanguinis PC909] gi|325489208|gb|EGC91590.1| tRNA modification GTPase TrmE [Turicibacter sp. HGF1] Length = 452 Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 45/121 (37%), Positives = 73/121 (60%), Gaps = 1/121 (0%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 I+G PNVGKS+L N+L++++ A+V N G TRD + G I G+ N++DTAGI D ++ Sbjct: 225 IIGRPNVGKSSLLNQLMREEKAIVTNIAGTTRDTVEGYINIGGLTLNLIDTAGIRDTEDI 284 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 A + +L INEA L+L ++++ +T D + S KN II+ ++T+I Sbjct: 285 VEAIGVEKSKKL-INEAELVLLVLNNNEKLTADDRELLSLTNDKNRIIILNKTDLETQIE 343 Query: 127 Q 127 + Sbjct: 344 R 344 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 69/123 (56%), Gaps = 5/123 (4%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 ++ ++GRPNVGKS+L+N+L+ + + + +G TRD+V N + + DTAG+R Sbjct: 221 IKTVIIGRPNVGKSSLLNQLMREEKAIVTNIAGTTRDTVEGYINIGGLTLNLIDTAGIRD 280 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 I E++ V+KS + + E +++L+ D ++ S+ N + +++ LNK Sbjct: 281 TEDIVEAI---GVEKSKKLINEAELVLLVLNNNEKLTADDRELL-SLTNDKNRIII-LNK 335 Query: 324 WDM 326 D+ Sbjct: 336 TDL 338 >gi|284053846|ref|ZP_06384056.1| tRNA modification GTPase TrmE [Arthrospira platensis str. Paraca] Length = 469 Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 47/120 (39%), Positives = 72/120 (60%), Gaps = 7/120 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI--AD 62 +AIVG PNVGKS+L N + A+V + PG TRD + Q ++ G+ ++DTAGI +D Sbjct: 228 VAIVGRPNVGKSSLLNAWSRSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRKSD 287 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 K I + ++++A A L+LF +D + G T ++ I + + KN PII+V NK D Sbjct: 288 DKVEQIGVE---RSQIAAQSADLVLFTLDCEKGWTEGENEI--YQQVKNRPIIVVMNKSD 342 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 52/169 (30%), Positives = 87/169 (51%), Gaps = 8/169 (4%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 L++A+VGRPNVGKS+L+N +R + G TRD V P+++ DTAG+RK Sbjct: 226 LKVAIVGRPNVGKSSLLNAWSRSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRK 285 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 + +EQ V++S + ++ + + LD + + + I V N +++ +NK Sbjct: 286 SD---DKVEQIGVERSQIAAQSADLVLFTLDCEKGWTEGENEIYQQVKN--RPIIVVMNK 340 Query: 324 WDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVL 372 D +S L++LR +AI N I I + +G+ DL S+L Sbjct: 341 SDRLSSA--QLENLR-QAIINKLDIKPSLIIATAATLNQGITDLETSIL 386 >gi|122701373|emb|CAL88076.1| GTPase [Helicobacter pylori] gi|122702783|emb|CAL88581.1| GTPase [Helicobacter pylori] Length = 170 Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 85/162 (52%), Gaps = 6/162 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 K+D + Y S + IS H+ G S L I + Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAILR 164 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122700859|emb|CAL88018.1| GTPase [Helicobacter pylori] Length = 170 Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/159 (33%), Positives = 83/159 (52%), Gaps = 6/159 (3%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGMA-- 66 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSNKM 121 K+ ++K++ A + LIL+++D K+ P D I F + K N +V NK+ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKS--VPSDEDIKLFREVFKINPNCFLVINKI 124 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 D + Y S + IS H+ G S L I Sbjct: 125 DNDKEKERAYAFSSFGIPKSFNISVSHNRGISALIDAIL 163 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 4/120 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD + +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +++ ++ +K + S + + ++D +D+++ VF L +NK D Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSVPSDEDIKLFREVFKINPNCFLVINKID 125 >gi|147679252|ref|YP_001213467.1| tRNA modification GTPase TrmE [Pelotomaculum thermopropionicum SI] gi|189036204|sp|A5CY46|MNME_PELTS RecName: Full=tRNA modification GTPase mnmE gi|146275349|dbj|BAF61098.1| predicted GTPase [Pelotomaculum thermopropionicum SI] Length = 459 Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 60/206 (29%), Positives = 103/206 (50%), Gaps = 26/206 (12%) Query: 182 EESPKENITSEGKSSVKNISKPLRIA-------------VVGRPNVGKSTLINRLLGYNR 228 EE+ E+I G+ ++ I + +R A ++GRPNVGKS+L+N LL NR Sbjct: 186 EEATVEDILRSGEDLIEEIKEIVRRAEAGKIYREGISTVIIGRPNVGKSSLLNALLRENR 245 Query: 229 LLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCET 288 + G TRD + N + P++I DTAG+R+ +++E+ V+K+ ++V + Sbjct: 246 AIVTDIPGTTRDIIEEYINIRGIPLKIIDTAGLRETG---DAVERIGVEKAREAVEQADL 302 Query: 289 TIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQI 348 +++LDA ++D I++ V G V+ +NK D+ K++ R Sbjct: 303 VLLVLDAARGLTEEDYAIIEKV--GGKKVIFIVNKADVREKKISSEGAARIA-------- 352 Query: 349 GDIYINTISGRTGEGLDDLMVSVLEI 374 G + IS G GLD L ++E+ Sbjct: 353 GGRPVLWISALEGTGLDKLEEKIVEM 378 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 56/180 (31%), Positives = 95/180 (52%), Gaps = 12/180 (6%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 I+G PNVGKS+L N L+++ A+V + PG TRD + I G+ I+DTAG+ + + Sbjct: 225 IIGRPNVGKSSLLNALLRENRAIVTDIPGTTRDIIEEYINIRGIPLKIIDTAGLRETGD- 283 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR-- 124 ++ + ++ A+ +A L+L ++D+ G+T D+AI + K +I + NK D R Sbjct: 284 AVERIGVEKAREAVEQADLVLLVLDAARGLTEEDYAIIEKVGGKK--VIFIVNKADVREK 341 Query: 125 -IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF--KQKYPNHPLEMIENNKRN 181 I+ I + ++ ISA G +L I ++ Q YP E+I +N R+ Sbjct: 342 KISSEGAARIAG--GRPVLWISALEGTGLDKLEEKIVEMVMGGQVYPKD--ELIISNTRH 397 >gi|327398259|ref|YP_004339128.1| tRNA modification GTPase mnmE [Hippea maritima DSM 10411] gi|327180888|gb|AEA33069.1| tRNA modification GTPase mnmE [Hippea maritima DSM 10411] Length = 453 Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 56/160 (35%), Positives = 87/160 (54%), Gaps = 9/160 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKS+L N + + A+V + PG TRD + Q INGV F+I+DTAGI Sbjct: 222 LALVGKPNVGKSSLLNLITGSERAIVTDIPGTTRDVVKEQFNINGVPFSILDTAGIRK-T 280 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD-- 122 N ++ K ++ AI+EA ++L + D +T D + L+ PII + NK D Sbjct: 281 NDTVEKIGVKRSLKAIDEADIVLAIFDGSNDLTQEDKKLIERLKSSAKPIIAILNKTDLG 340 Query: 123 TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKI 162 +I + N L F+ ++E+S + G +L + I Sbjct: 341 IKINKDN------LPFEHLLELSCKSGKGLDKLEKTLSNI 374 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 47/162 (29%), Positives = 91/162 (56%), Gaps = 16/162 (9%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VG+PNVGKS+L+N + G R + G TRD V +N P I DTAG+RK + Sbjct: 222 LALVGKPNVGKSSLLNLITGSERAIVTDIPGTTRDVVKEQFNINGVPFSILDTAGIRKTN 281 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +++E+ VK+S++++ + + + D + ++D ++++ + ++ ++ LNK D Sbjct: 282 ---DTVEKIGVKRSLKAIDEADIVLAIFDGSNDLTQEDKKLIERLKSSAKPIIAILNKTD 338 Query: 326 MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDL 367 + + + +D NLP ++ +S ++G+GLD L Sbjct: 339 L---GIKINKD-------NLPF---EHLLELSCKSGKGLDKL 367 >gi|292806454|gb|ADE42357.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 86/162 (53%), Gaps = 6/162 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 K+D + Y S + +IS H+ G S L I + Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFDISVSHNRGISALIDAILR 164 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|327183708|gb|AEA32155.1| GTPase Era [Lactobacillus amylovorus GRL 1118] Length = 301 Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 52/163 (31%), Positives = 90/163 (55%), Gaps = 10/163 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTL N LV +K+A+ N P TR+R+ G + + VDT GI Sbjct: 11 VALVGRPNVGKSTLMNYLVGQKVAITSNKPQTTRNRISGIYTSDDMQIVFVDTPGIFK-P 69 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + M+ + ++N+ L+LF+++ + I D I L++ +P+ +V NK+D Sbjct: 70 HSKLDDYMDKASLSSLNDVDLVLFMVEPEK-IGKGDQYIADLLKEVKVPVFLVINKVDQI 128 Query: 125 IAQR------NFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 + +++++ S FKEI+ ISA +G +L + + K Sbjct: 129 HPNKLLPIMDSYHKLES--FKEILPISATQGIGIEDLLATLNK 169 Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 85/168 (50%), Gaps = 13/168 (7%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP- 264 +A+VGRPNVGKSTL+N L+G +T ++ TR+ +S + + I DT G+ KP Sbjct: 11 VALVGRPNVGKSTLMNYLVGQKVAITSNKPQTTRNRISGIYTSDDMQIVFVDTPGIFKPH 70 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 S++ + ++ K S+ S+ + + +++ K D I D + V L +NK Sbjct: 71 SKLDDYMD----KASLSSLNDVDLVLFMVEPE-KIGKGDQYIADLLKEVKVPVFLVINKV 125 Query: 325 DMVS-DKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSV 371 D + +KL + D + L +I IS G G++DL+ ++ Sbjct: 126 DQIHPNKLLPIMD----SYHKLESFKEIL--PISATQGIGIEDLLATL 167 >gi|307721584|ref|YP_003892724.1| tRNA modification GTPase trmE [Sulfurimonas autotrophica DSM 16294] gi|306979677|gb|ADN09712.1| tRNA modification GTPase trmE [Sulfurimonas autotrophica DSM 16294] Length = 445 Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 36/113 (31%), Positives = 70/113 (61%), Gaps = 3/113 (2%) Query: 196 SVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEI 255 S + + + R+A++G+PNVGKS+L+N LL YNR + +G TRD++ H I I Sbjct: 207 SREGLMQGFRVAIIGKPNVGKSSLLNTLLNYNRAIVSDIAGTTRDTIEEQVKIGTHLIRI 266 Query: 256 FDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVD 308 DTAG+R+ + + +E+ +++S++++ + I L D + +++D +I++ Sbjct: 267 VDTAGIRESN---DEIERIGIQRSLEAINESDIVIALFDGSRKADEEDEQILE 316 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 42/130 (32%), Positives = 65/130 (50%), Gaps = 19/130 (14%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + +AI+G PNVGKS+L N L+ A+V + G TRD + Q I + IVDTAGI Sbjct: 215 FRVAIIGKPNVGKSSLLNTLLNYNRAIVSDIAGTTRDTIEEQVKIGTHLIRIVDTAGI-- 272 Query: 63 GKNCSIAKQMNDQTEL--------AINEAHLILFLIDSKAGITPYDHAITSFLR--KKNI 112 ++ ND+ E AINE+ +++ L D D I ++ + Sbjct: 273 -------RESNDEIERIGIQRSLEAINESDIVIALFDGSRKADEEDEQILELIKQNRDKK 325 Query: 113 PIIIVSNKMD 122 +++V NK+D Sbjct: 326 EMLVVKNKID 335 >gi|300857411|ref|YP_003782395.1| putative tRNA modification GTPase [Clostridium ljungdahlii DSM 13528] gi|300437526|gb|ADK17293.1| predicted tRNA modification GTPase [Clostridium ljungdahlii DSM 13528] Length = 460 Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 62/204 (30%), Positives = 106/204 (51%), Gaps = 21/204 (10%) Query: 167 YPNHPLEMIENNK---RNEESPKE--NITSEGKSSVKNISKPLRIAVVGRPNVGKSTLIN 221 YP LE + ++K R +E E +I S + K + L +VG+PNVGKS+L+N Sbjct: 184 YPEEDLEEMTSDKVSMRLQEILDEINHILSTAEEG-KIVRDGLNTVIVGKPNVGKSSLLN 242 Query: 222 RLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQ 281 L+ NR + G TRD + N PI++ DTAG+R+ + E + V++S Q Sbjct: 243 SLIRENRAIVTDVPGTTRDVIEEYMNIDGIPIKVIDTAGIRETEDLVEKI---GVERSKQ 299 Query: 282 SVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKA 341 + + I++LD++ + +D I++ V + + ++ LNK D ++DK+NL Sbjct: 300 KIDEADLVILMLDSSEELDDEDKEIMNYVKDKKY--IILLNKID-INDKINL-------- 348 Query: 342 IKNLPQIGDIYINTISGRTGEGLD 365 ++ + I S +TG+GLD Sbjct: 349 -DDICNLDSSCIIKTSIKTGKGLD 371 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 55/178 (30%), Positives = 100/178 (56%), Gaps = 5/178 (2%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PNVGKS+L N L+++ A+V + PG TRD + I+G+ ++DTAGI + ++ Sbjct: 229 IVGKPNVGKSSLLNSLIRENRAIVTDVPGTTRDVIEEYMNIDGIPIKVIDTAGIRETEDL 288 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 + K ++++ I+EA L++ ++DS + D I ++++ K II+ NK+D Sbjct: 289 -VEKIGVERSKQKIDEADLVILMLDSSEELDDEDKEIMNYVKDK--KYIILLNKIDIN-D 344 Query: 127 QRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 + N +I +LD I++ S + G ++ + I +F K P ++ N R++E Sbjct: 345 KINLDDICNLDSSCIIKTSIKTGKGLDKIKTCIKDLF-FKGEVKPGDLFITNARHKEG 401 >gi|292806670|gb|ADE42465.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERSYAFSSFGMPKSFNISVSHNRGISAL 158 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|291571683|dbj|BAI93955.1| tRNA modification GTPase [Arthrospira platensis NIES-39] Length = 469 Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 47/120 (39%), Positives = 72/120 (60%), Gaps = 7/120 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI--AD 62 +AIVG PNVGKS+L N + A+V + PG TRD + Q ++ G+ ++DTAGI +D Sbjct: 228 VAIVGRPNVGKSSLLNAWSRSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRKSD 287 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 K I + ++++A A L+LF +D + G T ++ I + + KN PII+V NK D Sbjct: 288 DKVEQIGVE---RSQIAAQSADLVLFTLDCEKGWTEGENEI--YQQVKNRPIIVVMNKSD 342 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 52/169 (30%), Positives = 87/169 (51%), Gaps = 8/169 (4%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 L++A+VGRPNVGKS+L+N +R + G TRD V P+++ DTAG+RK Sbjct: 226 LKVAIVGRPNVGKSSLLNAWSRSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRK 285 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 + +EQ V++S + ++ + + LD + + + I V N +++ +NK Sbjct: 286 SD---DKVEQIGVERSQIAAQSADLVLFTLDCEKGWTEGENEIYQQVKN--RPIIVVMNK 340 Query: 324 WDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVL 372 D +S L++LR +AI N I I + +G+ DL S+L Sbjct: 341 SDRLSSA--QLENLR-QAIINQLDIKPSLIIATAATLNQGITDLETSIL 386 >gi|206890795|ref|YP_002249040.1| tRNA modification GTPase TrmE [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742733|gb|ACI21790.1| tRNA modification GTPase TrmE [Thermodesulfovibrio yellowstonii DSM 11347] Length = 460 Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 62/207 (29%), Positives = 108/207 (52%), Gaps = 22/207 (10%) Query: 192 EGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNH 251 EG K + L A+VG+PNVGKS+L+N LL +R + G TRD + N K Sbjct: 214 EGYEEGKIYREGLTTAIVGKPNVGKSSLLNALLMKDRAIVTEVPGTTRDIIEEYVNIKGM 273 Query: 252 PIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVF 311 P++I DTAG+R+ + E+ + +K+++++V E +++LDA+ P + D I+ + Sbjct: 274 PLKIVDTAGIRQAHDLVEA---EGIKRTLRAVELAELVLLVLDASRPIDSLDEEIISRI- 329 Query: 312 NTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSV 371 T +++ +NK D+ + + L +KN P + IS GEG+++L Sbjct: 330 -TQKRLIVVINKKDIKNKEFQL-----PDFLKNKPTV------EISALKGEGIEELK--- 374 Query: 372 LEINKLWKTRITTSYLNSWLQKTQLQN 398 ++KT I+ Y L T+L++ Sbjct: 375 ---ELIFKTTISGKYEQEGLVVTKLRH 398 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 63/158 (39%), Positives = 83/158 (52%), Gaps = 5/158 (3%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T AIVG PNVGKS+L N L+ K A+V PG TRD + I G+ IVDTAGI Sbjct: 227 TTAIVGKPNVGKSSLLNALLMKDRAIVTEVPGTTRDIIEEYVNIKGMPLKIVDTAGIRQA 286 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + A+ + +T A+ A L+L ++D+ I D I S + +K +I+V NK D Sbjct: 287 HDLVEAEGIK-RTLRAVELAELVLLVLDASRPIDSLDEEIISRITQKR--LIVVINKKD- 342 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 I + F L K VEISA G EL +IFK Sbjct: 343 -IKNKEFQLPDFLKNKPTVEISALKGEGIEELKELIFK 379 >gi|122702281|emb|CAL88331.1| GTPase [Helicobacter pylori] Length = 170 Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/154 (34%), Positives = 82/154 (53%), Gaps = 6/154 (3%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGMA-- 66 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSNKM 121 K+ ++K++ A + LIL+++D K + P D I F + K N +V NK+ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYIVDGK--LIPSDEDIKLFREVFKINPNCFLVINKI 124 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 D + Y S + IS H+ G S L Sbjct: 125 DNDKEKERAYAFSSFGMPKSFNISVSHNRGISAL 158 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 61/120 (50%), Gaps = 4/120 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD + +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +++ ++ +K + S + + ++D + +D+++ VF L +NK D Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYIVDGKLIPSDEDIKLFREVFKINPNCFLVINKID 125 >gi|313904719|ref|ZP_07838093.1| tRNA modification GTPase TrmE [Eubacterium cellulosolvens 6] gi|313470512|gb|EFR65840.1| tRNA modification GTPase TrmE [Eubacterium cellulosolvens 6] Length = 460 Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 55/187 (29%), Positives = 93/187 (49%), Gaps = 4/187 (2%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PN GKS+L N L+ ++ A+V + G TRD L Q I G+ ++DTAGI D + Sbjct: 228 IVGKPNAGKSSLLNLLIGEEKAIVTDIAGTTRDILEEQINIKGITLRLLDTAGIRDASDV 287 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 I K ++ + + +A L+L+++D + D I ++ + +I+ N + T + Sbjct: 288 -IEKIGVERAKEQVKDADLVLYVVDGSVALDDNDFEIMKLIKDRKFVVILNKNDLSTIVT 346 Query: 127 QRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEESPK 186 E+ ++ +SA+H G EL I K+F + E+ N R++ + Sbjct: 347 SE---ELEQATGTPVISMSAKHSEGIDELEDQIEKMFFHGGISFNDEIYITNVRHKTCIE 403 Query: 187 ENITSEG 193 E I S G Sbjct: 404 EAIRSLG 410 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 44/176 (25%), Positives = 85/176 (48%), Gaps = 15/176 (8%) Query: 192 EGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNH 251 E S K +++ ++ +VG+PN GKS+L+N L+G + + +G TRD + N K Sbjct: 212 ESADSGKFMTEGIKTVIVGKPNAGKSSLLNLLIGEEKAIVTDIAGTTRDILEEQINIKGI 271 Query: 252 PIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVF 311 + + DTAG+R S + E + V+++ + V+ + + ++D ++ + D I+ + Sbjct: 272 TLRLLDTAGIRDASDVIEKI---GVERAKEQVKDADLVLYVVDGSVALDDNDFEIMKLIK 328 Query: 312 NTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDL 367 + V+L N + L Q T I ++S + EG+D+L Sbjct: 329 DRKFVVILNKNDLSTIVTSEELEQATGTPVI------------SMSAKHSEGIDEL 372 >gi|122701551|emb|CAL88165.1| GTPase [Helicobacter pylori] Length = 170 Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/160 (33%), Positives = 84/160 (52%), Gaps = 6/160 (3%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGMA-- 66 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSNKM 121 K+ ++K++ A + LIL+++D K+ P D + F + K N +V NK+ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVINKI 124 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 D + Y S + IS H+ G S L I + Sbjct: 125 DNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAILR 164 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD + +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122700845|emb|CAL88011.1| GTPase [Helicobacter pylori] gi|122700855|emb|CAL88016.1| GTPase [Helicobacter pylori] gi|122702531|emb|CAL88455.1| GTPase [Helicobacter pylori] Length = 170 Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|315640637|ref|ZP_07895743.1| GTP-binding protein Era [Enterococcus italicus DSM 15952] gi|315483665|gb|EFU74155.1| GTP-binding protein Era [Enterococcus italicus DSM 15952] Length = 298 Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 51/147 (34%), Positives = 81/147 (55%), Gaps = 7/147 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTL NR+V +K+A++ + TR+++ G +DT GI K Sbjct: 9 VALVGRPNVGKSTLLNRIVGQKIAIMSDKAQTTRNKIQGVYTTKDAQIVFIDTPGIHKPK 68 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + M + A+NE +ILF+I + D I L+K+++P+ +V NK+D + Sbjct: 69 -SRLGDFMVESAFSALNEVDVILFMISADQKRGKGDDLIIERLKKQSVPVFLVVNKLD-K 126 Query: 125 IAQRNFYEI---YS--LDFKEIVEISA 146 + E+ YS +DF E+V ISA Sbjct: 127 VHPDALLEVIADYSQQMDFAEVVPISA 153 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 65/123 (52%), Gaps = 5/123 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP- 264 +A+VGRPNVGKSTL+NR++G + ++ TR+ + + K+ I DT G+ KP Sbjct: 9 VALVGRPNVGKSTLLNRIVGQKIAIMSDKAQTTRNKIQGVYTTKDAQIVFIDTPGIHKPK 68 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 SR+ + + V+ + ++ + + ++ A K D I++ + V L +NK Sbjct: 69 SRLGDFM----VESAFSALNEVDVILFMISADQKRGKGDDLIIERLKKQSVPVFLVVNKL 124 Query: 325 DMV 327 D V Sbjct: 125 DKV 127 >gi|292806474|gb|ADE42367.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/162 (33%), Positives = 84/162 (51%), Gaps = 6/162 (3%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA-- 66 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSNKM 121 K+ ++K++ A + LIL+++D K+ P D I F + K N +V NK+ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREIFKINPNCFLVINKI 124 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 D + Y S + IS H+ G S L I + Sbjct: 125 DNDKEKERAYAFSSFGIPKSFSISVSHNRGISALIDAILSVL 166 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 85/172 (49%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ +F L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREIFKINPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D ++SVL++N+ Sbjct: 125 D--NDK----EKERAYAFSSFGIPKSFSISVSHNRGISALIDAILSVLDLNQ 170 >gi|122702221|emb|CAL88301.1| GTPase [Helicobacter pylori] Length = 170 Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERVYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122702279|emb|CAL88330.1| GTPase [Helicobacter pylori] Length = 170 Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/164 (32%), Positives = 85/164 (51%), Gaps = 6/164 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 K+D + Y S + IS H+ G S L I + Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSVL 166 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 85/172 (49%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D ++SVL++N+ Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSVLDLNQ 170 >gi|237737545|ref|ZP_04568026.1| GTP-binding protein [Fusobacterium mortiferum ATCC 9817] gi|229419425|gb|EEO34472.1| GTP-binding protein [Fusobacterium mortiferum ATCC 9817] Length = 298 Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 57/176 (32%), Positives = 92/176 (52%), Gaps = 7/176 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTL N+LV +K+A+V + G TRD + G N + +DT GI K Sbjct: 6 IAVVGRPNVGKSTLINKLVSEKVAIVSDKAGTTRDNIKGILNFNDNQYIFIDTPGIHKAK 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRK-KNIPIIIVSNKMD- 122 + + + M + + + +ILF++D I+ D + +++ K P I+V NK+D Sbjct: 66 HL-LGEYMTNSAIRVLKDVDVILFVLDGSQEISTGDQFVMEKVKEAKRTPRILVVNKIDK 124 Query: 123 ----TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEM 174 A+R E +F IVEIS ++ +G +L I ++ +P +M Sbjct: 125 LNDEQLKAKRLEIEEKLGEFDGIVEISGQYAIGLPKLLEKIDPFLEEGIKYYPDDM 180 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 84/165 (50%), Gaps = 10/165 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IAVVGRPNVGKSTLIN+L+ + ++G TRD++ N+ ++ DT G+ K Sbjct: 6 IAVVGRPNVGKSTLINKLVSEKVAIVSDKAGTTRDNIKGILNFNDNQYIFIDTPGIHKAK 65 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHA-VVLALNKW 324 + L + +++ ++ + + +LD + D +++ V +L +NK Sbjct: 66 HL---LGEYMTNSAIRVLKDVDVILFVLDGSQEISTGDQFVMEKVKEAKRTPRILVVNKI 122 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDI-YINTISGRTGEGLDDLM 368 D ++D + L+ K ++ ++G+ I ISG+ GL L+ Sbjct: 123 DKLND-----EQLKAKRLEIEEKLGEFDGIVEISGQYAIGLPKLL 162 >gi|122702551|emb|CAL88465.1| GTPase [Helicobacter pylori] Length = 170 Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 85/162 (52%), Gaps = 6/162 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 K+D + Y S + IS H+ G S L + + Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLR 164 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122700631|emb|CAL87904.1| GTPase [Helicobacter pylori] Length = 170 Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKSLNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERSYAFSSFGIPKSFNISVSHNRGISAL 158 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF T L +NK Sbjct: 70 LLSKEIKSLNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|260438846|ref|ZP_05792662.1| GTP-binding protein Era [Butyrivibrio crossotus DSM 2876] gi|292808685|gb|EFF67890.1| GTP-binding protein Era [Butyrivibrio crossotus DSM 2876] Length = 298 Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 56/165 (33%), Positives = 89/165 (53%), Gaps = 13/165 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIING----VIFNIVDTAGI 60 +A++G PNVGKSTL N L+ +K+A+ N P TR+R+ Q + +IF +DT GI Sbjct: 8 VALIGRPNVGKSTLMNYLIGQKIAITSNKPQTTRNRI--QTVYTDERGQIIF--LDTPGI 63 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 KN + + M E + + +IL+L++ I + I + L+ P+I+V NK Sbjct: 64 HKAKN-KLGEYMVTVAEKTLEDVDVILWLVEPTTYIGAGEQHIIATLKNCKKPVILVINK 122 Query: 121 MDT--RIAQRNFYEIYS--LDFKEIVEISAEHDLGTSELHSVIFK 161 +DT + F + YS + F EI+ +SA + T +L IFK Sbjct: 123 VDTVDKPEILKFIDRYSKEMKFSEIIPVSALKGINTEDLKETIFK 167 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 37/130 (28%), Positives = 67/130 (51%), Gaps = 4/130 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKSTL+N L+G +T ++ TR+ + + + I DT G+ K Sbjct: 8 VALIGRPNVGKSTLMNYLIGQKIAITSNKPQTTRNRIQTVYTDERGQIIFLDTPGIHKAK 67 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + V + +++ + + L++ T + I+ ++ N V+L +NK D Sbjct: 68 N---KLGEYMVTVAEKTLEDVDVILWLVEPTTYIGAGEQHIIATLKNCKKPVILVINKVD 124 Query: 326 MVSDKLNLLQ 335 V DK +L+ Sbjct: 125 TV-DKPEILK 133 >gi|122701693|emb|CAL88236.1| GTPase [Helicobacter pylori] Length = 170 Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/164 (32%), Positives = 85/164 (51%), Gaps = 6/164 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREIFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 K+D + Y S + IS H+ G S L I + Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSVL 166 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 84/172 (48%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ +F L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREIFKINPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D ++SVL +N+ Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSVLNLNQ 170 >gi|122701495|emb|CAL88137.1| GTPase [Helicobacter pylori] Length = 170 Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGVA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 84/172 (48%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT G+ K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGVAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D ++S L +N+ Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSTLNLNQ 170 >gi|4467681|emb|CAB37792.1| GTP-binding protein homologue [Helicobacter pylori] gi|122702711|emb|CAL88545.1| GTPase [Helicobacter pylori] Length = 170 Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/162 (33%), Positives = 85/162 (52%), Gaps = 6/162 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 K+D + Y S + IS H+ G S L I + Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAILR 164 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|309804055|ref|ZP_07698136.1| tRNA modification GTPase TrmE [Lactobacillus iners LactinV 11V1-d] gi|308163823|gb|EFO66089.1| tRNA modification GTPase TrmE [Lactobacillus iners LactinV 11V1-d] Length = 461 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 57/176 (32%), Positives = 91/176 (51%), Gaps = 4/176 (2%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AIVG PNVGKS+L N L K++ A+V N G TRD L + G++ ++DTAGI + Sbjct: 228 AIVGRPNVGKSSLLNYLSKEEKAIVTNIAGTTRDTLEEYVSLKGILLKLIDTAGIRQTDD 287 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 + K ++++ AI E+ L+L LI+S +T D + + K I++ NK D ++ Sbjct: 288 I-VEKIGVERSKRAITESDLVLLLINSSEELTEEDQKLLELTQDK--KRIVILNKAD-QV 343 Query: 126 AQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 A+ +I + IV IS + L I +F Q + E++ N+R Sbjct: 344 AKITKKDIQKITDSPIVTISVLKKQNMTGLEEAIKSLFLQGIADSKSEVMVTNQRQ 399 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 37/131 (28%), Positives = 75/131 (57%), Gaps = 5/131 (3%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + L A+VGRPNVGKS+L+N L + + + +G TRD++ + K +++ D Sbjct: 219 KVVRSGLATAIVGRPNVGKSSLLNYLSKEEKAIVTNIAGTTRDTLEEYVSLKGILLKLID 278 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ I E + V++S +++ + ++L++++ ++D ++++ + V Sbjct: 279 TAGIRQTDDIVEKI---GVERSKRAITESDLVLLLINSSEELTEEDQKLLELTQDKKRIV 335 Query: 318 VLALNKWDMVS 328 + LNK D V+ Sbjct: 336 I--LNKADQVA 344 >gi|292806692|gb|ADE42476.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 85/162 (52%), Gaps = 6/162 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLNAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 K+D + Y S + IS H+ G S L + + Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLR 164 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 39/122 (31%), Positives = 65/122 (53%), Gaps = 8/122 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-- 67 Query: 266 RITESLEQKTVKK-SMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNK 323 ++L K +K ++ + + + + ++D +IP + +D+++ VF T L +NK Sbjct: 68 ---DALLSKEIKALNLNAAQMSDLILYVVDGKSIPSD-EDIKLFREVFKTNPNCFLVINK 123 Query: 324 WD 325 D Sbjct: 124 ID 125 >gi|254507481|ref|ZP_05119615.1| GTP-binding protein Era [Vibrio parahaemolyticus 16] gi|219549551|gb|EED26542.1| GTP-binding protein Era [Vibrio parahaemolyticus 16] Length = 325 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 48/150 (32%), Positives = 82/150 (54%), Gaps = 8/150 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL NR++ +K+++ P TR R+ G VDT G+ + Sbjct: 34 VAIVGRPNVGKSTLLNRILGQKISITSRKPQTTRHRIMGVDTEGDYQAIYVDTPGLHIEE 93 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN ++++ +L+ FL+D T D + + L+K N P+++ NK+D Sbjct: 94 KRAINRLMNRAANSSLSDVNLVFFLVDG-THWTADDEMVLTKLQKSNFPVVLCVNKVDN- 151 Query: 125 IAQRNFYEIY------SLDFKEIVEISAEH 148 + RN ++ ++F ++V ISA+H Sbjct: 152 VQDRNDVMLHMMEMSKKMEFVDVVPISAKH 181 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 77/169 (45%), Gaps = 9/169 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMR-KP 264 +A+VGRPNVGKSTL+NR+LG +T + TR + ++ DT G+ + Sbjct: 34 VAIVGRPNVGKSTLLNRILGQKISITSRKPQTTRHRIMGVDTEGDYQAIYVDTPGLHIEE 93 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 R L + S+ V L+D T + D ++ + + VVL +NK Sbjct: 94 KRAINRLMNRAANSSLSDVNLV---FFLVDGT-HWTADDEMVLTKLQKSNFPVVLCVNKV 149 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 D V D+ D+ ++ ++ + + IS + G+ +D L V E Sbjct: 150 DNVQDR----NDVMLHMMEMSKKMEFVDVVPISAKHGKNIDVLRKHVRE 194 >gi|122701401|emb|CAL88090.1| GTPase [Helicobacter pylori] gi|122701443|emb|CAL88111.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/162 (33%), Positives = 85/162 (52%), Gaps = 6/162 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL K+++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 K+D + Y S + IS H+ G S L I + Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAILR 164 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|224532071|ref|ZP_03672703.1| tRNA modification GTPase TrmE [Borrelia valaisiana VS116] gi|224511536|gb|EEF81942.1| tRNA modification GTPase TrmE [Borrelia valaisiana VS116] Length = 464 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 44/124 (35%), Positives = 75/124 (60%), Gaps = 6/124 (4%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+ + G+ N GKS+LFN +KK ++V ++PG TRD + ++G++FN+ DTAG+ D Sbjct: 224 TLVLAGSVNAGKSSLFNLFLKKDRSIVSSYPGTTRDYIEASFELDGILFNLFDTAGLRDA 283 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFL--RKKNIPIIIVSNKM 121 N + + +++ I EA L++++ID + +T D SF+ K N I+ V NK+ Sbjct: 284 DNF-VERLGIEKSNSLIKEASLVIYVIDVNSNLTRDD---ISFIDSNKSNSKILFVLNKI 339 Query: 122 DTRI 125 D +I Sbjct: 340 DLKI 343 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 52/186 (27%), Positives = 82/186 (44%), Gaps = 21/186 (11%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 I + + + G N GKS+L N L +R + S G TRD + S+ +FDTA Sbjct: 219 IDHGVTLVLAGSVNAGKSSLFNLFLKKDRSIVSSYPGTTRDYIEASFELDGILFNLFDTA 278 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R E L ++KS ++ I ++D + D+ +DS + ++ Sbjct: 279 GLRDADNFVERL---GIEKSNSLIKEASLVIYVIDVNSNLTRDDISFIDSN-KSNSKILF 334 Query: 320 ALNKWDMVSDK----------LNLLQDLRTKAIKNLPQIGDIYINTISG-----RTGEGL 364 LNK D+ +K LN +L + KNL I DI + I R GL Sbjct: 335 VLNKIDLKINKSTEEFVRSSVLN-SSNLIMISTKNLEGI-DILYDKIRALISYERVEIGL 392 Query: 365 DDLMVS 370 DD+++S Sbjct: 393 DDIIIS 398 >gi|122701379|emb|CAL88079.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/162 (33%), Positives = 85/162 (52%), Gaps = 6/162 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL K+++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 K+D + Y S + IS H+ G S L I + Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAILR 164 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 83/172 (48%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D ++ L++NK Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILRALDLNK 170 >gi|148265178|ref|YP_001231884.1| GTP-binding protein Era [Geobacter uraniireducens Rf4] gi|259645947|sp|A5G693|ERA_GEOUR RecName: Full=GTPase Era gi|146398678|gb|ABQ27311.1| GTP-binding protein Era [Geobacter uraniireducens Rf4] Length = 297 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 56/175 (32%), Positives = 86/175 (49%), Gaps = 13/175 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 ++I+G PNVGKSTL NR++ K+ + + P TR+R+ G + G +DT GI K Sbjct: 11 VSIIGRPNVGKSTLLNRILGDKIVITSDKPQTTRNRIQGIHNLPGCQMVFIDTPGIHRAK 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD-- 122 + + K M D +I E +ILFL+++ A + I L + P+++V NK+D Sbjct: 71 S-KLNKYMVDVALSSIKEVDVILFLVEADAKPANQEGMILELLANADAPVLLVINKIDLV 129 Query: 123 ------TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHP 171 RIA + +Y F+EIV +SA G L V+ P P Sbjct: 130 AKEALLERIAA--YAALYP--FREIVPVSALSGDGVERLVEVVHGFIPAGPPYFP 180 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 47/163 (28%), Positives = 85/163 (52%), Gaps = 8/163 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 ++++GRPNVGKSTL+NR+LG ++T + TR+ + N + DT G+ Sbjct: 11 VSIIGRPNVGKSTLLNRILGDKIVITSDKPQTTRNRIQGIHNLPGCQMVFIDTPGIH--- 67 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 R L + V ++ S++ + + L++A Q+ I++ + N V+L +NK D Sbjct: 68 RAKSKLNKYMVDVALSSIKEVDVILFLVEADAKPANQEGMILELLANADAPVLLVINKID 127 Query: 326 MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLM 368 +V+ K LL+ R A L +I +S +G+G++ L+ Sbjct: 128 LVA-KEALLE--RIAAYAALYPFREIV--PVSALSGDGVERLV 165 >gi|292806610|gb|ADE42435.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 52/164 (31%), Positives = 85/164 (51%), Gaps = 6/164 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 G ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 KG--ALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 K+D + Y S + IS H+ G S L + ++ Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLRVL 166 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 83/172 (48%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKGA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D ++ VL +NK Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLRVLNLNK 170 >gi|160940878|ref|ZP_02088218.1| hypothetical protein CLOBOL_05770 [Clostridium bolteae ATCC BAA-613] gi|158436122|gb|EDP13889.1| hypothetical protein CLOBOL_05770 [Clostridium bolteae ATCC BAA-613] Length = 303 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 59/166 (35%), Positives = 86/166 (51%), Gaps = 14/166 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIING----VIFNIVDTAGI 60 + ++G PNVGKSTL N L+ +K+A+ + P TR+R+ Q + +IF +DT GI Sbjct: 12 VTLIGRPNVGKSTLMNHLIGQKIAITSDKPQTTRNRI--QTVYTDDRGQIIF--LDTPGI 67 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 KN + + M + E + E +IL+L++ I + I L+ PII+V NK Sbjct: 68 HKAKN-KLGQYMVNVAEHTLKEVDVILWLVEPATFIGAGERHIAEQLKNVKTPIILVINK 126 Query: 121 MDTRIAQRN---FYEIYS--LDFKEIVEISAEHDLGTSELHSVIFK 161 +DT Q F Y DF EIV +SA D T L +IFK Sbjct: 127 IDTVKNQDEILTFIAAYKDVCDFAEIVPLSALKDKNTDLLTELIFK 172 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 33/129 (25%), Positives = 61/129 (47%), Gaps = 3/129 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 + ++GRPNVGKSTL+N L+G +T + TR+ + + I DT G+ K Sbjct: 12 VTLIGRPNVGKSTLMNHLIGQKIAITSDKPQTTRNRIQTVYTDDRGQIIFLDTPGIHKAK 71 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L Q V + +++ + + L++ + I + + N ++L +NK D Sbjct: 72 N---KLGQYMVNVAEHTLKEVDVILWLVEPATFIGAGERHIAEQLKNVKTPIILVINKID 128 Query: 326 MVSDKLNLL 334 V ++ +L Sbjct: 129 TVKNQDEIL 137 >gi|18075555|emb|CAD11173.1| GTP-binding protein [Helicobacter pylori] gi|122702821|emb|CAL88600.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKTLNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISAL 158 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 68/121 (56%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ E KT+ ++++ + + + ++D +IP + +D+++ VF T L +NK Sbjct: 70 LLSK--EIKTL--NLKAAQMSDLILYVVDGKSIPSD-EDIKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|317452831|emb|CBL87851.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLR--KKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFRKVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFRKVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122702451|emb|CAL88416.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 85/162 (52%), Gaps = 6/162 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGREVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREIFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 K+D + Y S + IS H+ G S L + + Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISALIDAVLR 164 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 63/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGREVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ +F L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREIFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122701387|emb|CAL88083.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 52/164 (31%), Positives = 86/164 (52%), Gaps = 6/164 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 K+D + Y S + IS H+ G S L + ++ Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLRVL 166 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122702459|emb|CAL88420.1| GTPase [Helicobacter pylori] gi|292806608|gb|ADE42434.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISAL 158 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122701481|emb|CAL88130.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREIFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ +F L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREIFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|124504927|ref|XP_001351205.1| GTP-binding protein EngA, putative [Plasmodium falciparum 3D7] gi|3764000|emb|CAA15593.1| GTP-binding protein EngA, putative [Plasmodium falciparum 3D7] Length = 911 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 66/275 (24%), Positives = 127/275 (46%), Gaps = 18/275 (6%) Query: 201 SKPLRIAVVGRPNVGKSTLINRLLGYNRL-------LTGSQSGITRDSVSISWNWKNHPI 253 +K +++ V+G N GK++LI +L N + L G + I D +S+ +KN I Sbjct: 631 NKDIKVCVLGEKNCGKTSLIESILKNNIINENDIYELFGKRKYINND---MSFYYKNKKI 687 Query: 254 EIFDTAGMRKPSRI-TESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ---DLRIVDS 309 EI DT + K + E L + ++R + I + + D +++ Sbjct: 688 EILDTCRLSKQHKFKNEDLLFDENNRVYTNIRKSDICIYIKEIKNNNINLNKVDKKMIFY 747 Query: 310 VFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQI-GDIYINTISGRTGEGLDDLM 368 + ++ +NK D++ L + R ++ + DI I ++ + ++ L+ Sbjct: 748 LLKEKKNIIFIVNKIDLI---LTNFEKKRNDFLQEFSNLFNDIPIIFLNTKNNTHINTLL 804 Query: 369 VSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFLIFCT 428 ++ I+K+ I+TS LN +L + P P + + KYI QI ++P +FLIF Sbjct: 805 NKIIHIHKMNNVIISTSLLNLFLMQFLKLFPIPWLKKKKCHFKYIKQINTNPITFLIFTN 864 Query: 429 FPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSS 463 K+P +Y + +L+ F L I I+ F+++ Sbjct: 865 LYRKVPNNYLTFFKKKLKHEFDLRYINIQFIFKTT 899 >gi|317452839|emb|CBL87855.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/162 (33%), Positives = 85/162 (52%), Gaps = 6/162 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 K+D + Y S + IS H+ G S L I + Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAILR 164 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122700889|emb|CAL88033.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/159 (33%), Positives = 83/159 (52%), Gaps = 6/159 (3%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGMA-- 66 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSNKM 121 K+ ++K++ A + LIL+++D K+ P D + F + K N +V NK+ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVINKI 124 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 D + Y S + IS H+ G S L I Sbjct: 125 DNDKEKERAYAFSSFGIPKSFNISVSHNRGISALIDAIL 163 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD + +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122702545|emb|CAL88462.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREIFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISAL 158 Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ +F T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREIFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|315652502|ref|ZP_07905486.1| GTP-binding protein Era [Eubacterium saburreum DSM 3986] gi|315485218|gb|EFU75616.1| GTP-binding protein Era [Eubacterium saburreum DSM 3986] Length = 304 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 55/168 (32%), Positives = 88/168 (52%), Gaps = 10/168 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIV--DTAGIAD 62 +A++G PNVGKSTL N L+ +K+A+ + P TR+R+ Q + IV DT GI Sbjct: 11 VALIGRPNVGKSTLMNTLIGQKIAITSSKPQTTRNRI--QTVFTDERGQIVFLDTPGIHK 68 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 KN + + M + + + L+L+L++ I D I L +P+I+ NK+D Sbjct: 69 AKN-KLGEYMVKVSTRTLRDVDLVLWLVEPGTFIGEGDEHIFEILSDVEVPVILAVNKVD 127 Query: 123 TRIAQRNFYEI---YS--LDFKEIVEISAEHDLGTSELHSVIFKIFKQ 165 + + + E+ YS ++F +IV +SA T EL VIFK + Sbjct: 128 SLKQKDDILEVIAKYSSKMNFADIVPVSALKGTNTDELLKVIFKYLSE 175 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/130 (30%), Positives = 69/130 (53%), Gaps = 3/130 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKSTL+N L+G +T S+ TR+ + + + I DT G+ K Sbjct: 11 VALIGRPNVGKSTLMNTLIGQKIAITSSKPQTTRNRIQTVFTDERGQIVFLDTPGIHKAK 70 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + VK S +++R + + L++ + D I + + + V+LA+NK D Sbjct: 71 N---KLGEYMVKVSTRTLRDVDLVLWLVEPGTFIGEGDEHIFEILSDVEVPVILAVNKVD 127 Query: 326 MVSDKLNLLQ 335 + K ++L+ Sbjct: 128 SLKQKDDILE 137 >gi|292806546|gb|ADE42403.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/164 (32%), Positives = 85/164 (51%), Gaps = 6/164 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 K+D + Y S + IS H+ G S L I + Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSVL 166 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 84/172 (48%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D ++SVL +N+ Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSVLNLNQ 170 >gi|262375525|ref|ZP_06068758.1| GTP-binding protein Era [Acinetobacter lwoffii SH145] gi|262309779|gb|EEY90909.1| GTP-binding protein Era [Acinetobacter lwoffii SH145] Length = 342 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/178 (29%), Positives = 89/178 (50%), Gaps = 6/178 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N ++ +K+++ P TR ++ G VDT G+ + Sbjct: 42 VAIVGRPNVGKSTLMNHILGQKLSITSRKPQTTRHKIVGIDSREKSQAVFVDTPGMHKKE 101 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I K MN A+ + +L+LF++D++ TP D + L+ +P+I+V NK+DT Sbjct: 102 VRAINKMMNRAAHSALRDVNLVLFVVDAQKW-TPNDDLVLEKLKNAEMPVILVINKLDTF 160 Query: 125 IAQRNFYEIYS-----LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 + + ++F EIV +SA L I K + P + L+ + + Sbjct: 161 ENKNEALPLIREREKLMNFAEIVPVSALRGANLEHLRDTIAKYLPFQPPLYSLDQLTD 218 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 82/169 (48%), Gaps = 8/169 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS-VSISWNWKNHPIEIFDTAGMRKP 264 +A+VGRPNVGKSTL+N +LG +T + TR V I K+ + DT GM K Sbjct: 42 VAIVGRPNVGKSTLMNHILGQKLSITSRKPQTTRHKIVGIDSREKSQAV-FVDTPGMHK- 99 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 + ++ + + + ++R + ++DA DL +++ + N V+L +NK Sbjct: 100 -KEVRAINKMMNRAAHSALRDVNLVLFVVDAQKWTPNDDL-VLEKLKNAEMPVILVINKL 157 Query: 325 DMVSDKLNLLQDLRTKA-IKNLPQIGDIYINTISGRTGEGLDDLMVSVL 372 D +K L +R + + N +I + ++ + G E L D + L Sbjct: 158 DTFENKNEALPLIREREKLMNFAEI--VPVSALRGANLEHLRDTIAKYL 204 >gi|215482646|ref|YP_002324840.1| GTP-binding protein Era [Acinetobacter baumannii AB307-0294] gi|213986558|gb|ACJ56857.1| GTP-binding protein Era [Acinetobacter baumannii AB307-0294] Length = 301 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 55/178 (30%), Positives = 88/178 (49%), Gaps = 6/178 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N L+ +K+++ P TR ++ G + VDT G+ + Sbjct: 1 MAIVGRPNVGKSTLMNHLLGQKLSITSRKPQTTRHKIIGIDSREKMQAVYVDTPGMHKKE 60 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I K MN A+ + +L+LF+ID+ T D + L+ ++P+I+V NK DT Sbjct: 61 VRAINKMMNRAAHSALRDVNLVLFVIDAHKW-TQNDDLVLEKLKNADMPVILVINKADTF 119 Query: 125 IAQRNFYEIYS-----LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 +R + ++F EIV +SA L I K + P + + I + Sbjct: 120 GDKREILPLIQERAKLMNFAEIVPVSALRGANLEHLSETIEKYLPYQPPLYSFDQITD 177 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/137 (29%), Positives = 70/137 (51%), Gaps = 5/137 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS-VSISWNWKNHPIEIFDTAGMRKP 264 +A+VGRPNVGKSTL+N LLG +T + TR + I K + + DT GM K Sbjct: 1 MAIVGRPNVGKSTLMNHLLGQKLSITSRKPQTTRHKIIGIDSREKMQAVYV-DTPGMHKK 59 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 ++ + + + ++R + ++DA + DL +++ + N V+L +NK Sbjct: 60 E--VRAINKMMNRAAHSALRDVNLVLFVIDAHKWTQNDDL-VLEKLKNADMPVILVINKA 116 Query: 325 DMVSDKLNLLQDLRTKA 341 D DK +L ++ +A Sbjct: 117 DTFGDKREILPLIQERA 133 >gi|239501067|ref|ZP_04660377.1| GTP-binding protein Era [Acinetobacter baumannii AB900] Length = 342 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/178 (30%), Positives = 88/178 (49%), Gaps = 6/178 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N L+ +K+++ P TR ++ G + VDT G+ + Sbjct: 42 VAIVGRPNVGKSTLMNHLLGQKLSITSRKPQTTRHKIIGIDSREKMQAVYVDTPGMHKKE 101 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I K MN A+ + +L+LF+ID+ T D + L+ ++P+I+V NK DT Sbjct: 102 VRAINKMMNRAAHSALRDVNLVLFVIDAHKW-TQNDDLVLEKLKNADMPVILVINKADTF 160 Query: 125 IAQRNFYEIYS-----LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 +R + ++F EI+ +SA L I K + P + + I + Sbjct: 161 GDKREILPLIQERAKLMNFAEIIPVSALRGANLEHLSETIEKYLPYQPPLYSFDQITD 218 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 47/163 (28%), Positives = 83/163 (50%), Gaps = 8/163 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS-VSISWNWKNHPIEIFDTAGMRKP 264 +A+VGRPNVGKSTL+N LLG +T + TR + I K + + DT GM K Sbjct: 42 VAIVGRPNVGKSTLMNHLLGQKLSITSRKPQTTRHKIIGIDSREKMQAVYV-DTPGMHK- 99 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 + ++ + + + ++R + ++DA + DL +++ + N V+L +NK Sbjct: 100 -KEVRAINKMMNRAAHSALRDVNLVLFVIDAHKWTQNDDL-VLEKLKNADMPVILVINKA 157 Query: 325 DMVSDKLNLLQDLRTKA-IKNLPQIGDIYINTISGRTGEGLDD 366 D DK +L ++ +A + N +I I ++ + G E L + Sbjct: 158 DTFGDKREILPLIQERAKLMNFAEI--IPVSALRGANLEHLSE 198 >gi|227892551|ref|ZP_04010356.1| GTP-binding protein Era [Lactobacillus ultunensis DSM 16047] gi|227865672|gb|EEJ73093.1| GTP-binding protein Era [Lactobacillus ultunensis DSM 16047] Length = 301 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 55/162 (33%), Positives = 88/162 (54%), Gaps = 8/162 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A++G PNVGKSTL N LV +K+A+ N P TR+R+ G N + VDT GI Sbjct: 11 VALIGRPNVGKSTLMNYLVGQKVAITSNKPQTTRNRISGIYTSNKMQVVFVDTPGIFK-P 69 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + M+ + ++N+ L+LF+++ + I D I L++ +P+ +V NK+D + Sbjct: 70 HSKLDDYMDKASLSSLNDVDLVLFMVEPEE-IGKGDQYIADLLKEVKVPVFLVINKVD-Q 127 Query: 125 IAQRNFYEI----YSLD-FKEIVEISAEHDLGTSELHSVIFK 161 I I + L+ FKEI+ ISA +G +L I K Sbjct: 128 IHPNKLLPIMDSYHKLEGFKEILPISATQGIGIEDLLGTINK 169 Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 48/168 (28%), Positives = 83/168 (49%), Gaps = 13/168 (7%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP- 264 +A++GRPNVGKSTL+N L+G +T ++ TR+ +S + + DT G+ KP Sbjct: 11 VALIGRPNVGKSTLMNYLVGQKVAITSNKPQTTRNRISGIYTSNKMQVVFVDTPGIFKPH 70 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 S++ + ++ K S+ S+ + + +++ K D I D + V L +NK Sbjct: 71 SKLDDYMD----KASLSSLNDVDLVLFMVEPE-EIGKGDQYIADLLKEVKVPVFLVINKV 125 Query: 325 DMVS-DKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSV 371 D + +KL + D K G I IS G G++DL+ ++ Sbjct: 126 DQIHPNKLLPIMDSYHKL------EGFKEILPISATQGIGIEDLLGTI 167 >gi|122702153|emb|CAL88267.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 52/162 (32%), Positives = 85/162 (52%), Gaps = 6/162 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 K+D + Y S + IS H+ G S L + + Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISALIDAVLR 164 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122700791|emb|CAL87984.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISAL 158 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|18075593|emb|CAD11192.1| GTP-binding protein [Helicobacter pylori] gi|99905869|gb|ABF68629.1| YphC [Helicobacter pylori] gi|122700765|emb|CAL87971.1| GTPase [Helicobacter pylori] gi|122700825|emb|CAL88001.1| GTPase [Helicobacter pylori] gi|122701713|emb|CAL88246.1| GTPase [Helicobacter pylori] gi|122701715|emb|CAL88247.1| GTPase [Helicobacter pylori] gi|122702333|emb|CAL88357.1| GTPase [Helicobacter pylori] gi|122702499|emb|CAL88440.1| GTPase [Helicobacter pylori] gi|122702553|emb|CAL88466.1| GTPase [Helicobacter pylori] gi|122702679|emb|CAL88529.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISAL 158 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|186684424|ref|YP_001867620.1| tRNA modification GTPase TrmE [Nostoc punctiforme PCC 73102] gi|186466876|gb|ACC82677.1| tRNA modification GTPase TrmE [Nostoc punctiforme PCC 73102] Length = 464 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 45/118 (38%), Positives = 70/118 (59%), Gaps = 3/118 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKS+L N + A+V + PG TRD + Q ++ G+ ++DTAGI + Sbjct: 228 VAIVGRPNVGKSSLLNAWSRSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETT 287 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + + K +++ A N A L+L ID+ AG T D I ++ + P+I+V NK+D Sbjct: 288 D-QVEKIGVERSRRAANAADLVLLTIDASAGWTEGDREIYEQVQHR--PLILVINKID 342 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 51/176 (28%), Positives = 96/176 (54%), Gaps = 13/176 (7%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 L++A+VGRPNVGKS+L+N +R + G TRD V P+++ DTAG+R+ Sbjct: 226 LKVAIVGRPNVGKSSLLNAWSRSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRE 285 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 T+ +E+ V++S ++ + ++ +DA+ + + D I + V + ++L +NK Sbjct: 286 T---TDQVEKIGVERSRRAANAADLVLLTIDASAGWTEGDREIYEQVQH--RPLILVINK 340 Query: 324 WDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWK 379 D+V ++ + K +++ + I T + + +G+D L V++LEI K K Sbjct: 341 IDLVEER-------QRKTLQSQIPNPNSKIATAAAQN-QGIDALEVAILEIVKAEK 388 >gi|122701709|emb|CAL88244.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERSYAFSSFGIPKSFNISVSHNRGISALIDAIL 163 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122700769|emb|CAL87973.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 85/162 (52%), Gaps = 6/162 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 K+D + Y S + IS H+ G S L I + Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISALIDAILR 164 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|292669286|ref|ZP_06602712.1| tRNA modification GTPase TrmE [Selenomonas noxia ATCC 43541] gi|292649127|gb|EFF67099.1| tRNA modification GTPase TrmE [Selenomonas noxia ATCC 43541] Length = 458 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 49/179 (27%), Positives = 87/179 (48%), Gaps = 15/179 (8%) Query: 193 GKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHP 252 G + + + + ++ +VGRPNVGKS+L+N LLG R + G TRD + + P Sbjct: 211 GADAGRVLREGVKTVIVGRPNVGKSSLLNALLGMERAIVTDVPGTTRDVIEEEIIVEGIP 270 Query: 253 IEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFN 312 + + DTAG+R +++EQ V+++ + + E + + DA+ +D ++ + N Sbjct: 271 LRLLDTAGLRAAE---DAVEQIGVRRTEEHLADAELILAVFDASAALTDEDRDLLARLQN 327 Query: 313 TGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSV 371 T +++ NK D R+ + D + TIS R G GLD L ++ Sbjct: 328 TAADILVLCNKED------------RSAVLTAADFALDAPVLTISAREGTGLDALRAAI 374 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 50/153 (32%), Positives = 85/153 (55%), Gaps = 4/153 (2%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PNVGKS+L N L+ + A+V + PG TRD + + I+ G+ ++DTAG+ ++ Sbjct: 226 IVGRPNVGKSSLLNALLGMERAIVTDVPGTTRDVIEEEIIVEGIPLRLLDTAGLRAAED- 284 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 ++ + +TE + +A LIL + D+ A +T D + + L+ I+++ NK D R A Sbjct: 285 AVEQIGVRRTEEHLADAELILAVFDASAALTDEDRDLLARLQNTAADILVLCNKED-RSA 343 Query: 127 QRNFYEIYSLDFKEIVEISAEHDLGTSELHSVI 159 + ++LD ++ ISA G L + I Sbjct: 344 VLTAAD-FALD-APVLTISAREGTGLDALRAAI 374 >gi|122702541|emb|CAL88460.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGTPKSFNISVSHNRGISALIDAIL 163 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 84/172 (48%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKTNPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D ++S L +N+ Sbjct: 125 D--NDK----EKERAYAFSSFGTPKSFNISVSHNRGISALIDAILSALNLNQ 170 >gi|122702869|emb|CAL88624.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 85/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A+ + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAVQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K +V+ + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLK----AVQMSDLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|317133704|ref|YP_004093018.1| tRNA modification GTPase TrmE [Ethanoligenens harbinense YUAN-3] gi|315471683|gb|ADU28287.1| tRNA modification GTPase TrmE [Ethanoligenens harbinense YUAN-3] Length = 455 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 44/123 (35%), Positives = 69/123 (56%), Gaps = 9/123 (7%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VG+PNVGKSTL+NRLLG R + +G TRD V S + + +FDTAG+R+ Sbjct: 223 VAIVGKPNVGKSTLMNRLLGEERSIVTEIAGTTRDVVEESAQFAGMTLHLFDTAGLRETD 282 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNT--GHAVVLALNK 323 + +E+ V ++ + VL D + P + +D +S+F+ G V+ LNK Sbjct: 283 ---DPVERIGVARAKSKIEQAMLVFVLFDGSRPLDGED----ESIFSMLQGKRVIAILNK 335 Query: 324 WDM 326 D+ Sbjct: 336 ADL 338 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 55/178 (30%), Positives = 92/178 (51%), Gaps = 7/178 (3%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AIVG PNVGKSTL NRL+ ++ ++V G TRD + A G+ ++ DTAG+ + Sbjct: 222 TVAIVGKPNVGKSTLMNRLLGEERSIVTEIAGTTRDVVEESAQFAGMTLHLFDTAGLRET 281 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + + + + + I +A L+ L D + D +I S L+ K +I + NK D Sbjct: 282 DD-PVERIGVARAKSKIEQAMLVFVLFDGSRPLDGEDESIFSMLQGKR--VIAILNKAD- 337 Query: 124 RIAQR-NFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + QR + I S+ F ++V ISA G L + + F+ + + M+ N ++ Sbjct: 338 -LPQRCDMARIRSV-FPDMVSISAAEAHGMDALETRLRDRFRLEAIDPRAGMLANARQ 393 >gi|122700905|emb|CAL88041.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERTYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + RT A + I+ R L D +++ L +N+ Sbjct: 125 D--NDK----EKERTYAFSSFGMPKSFNISVSHNRGISALIDAILNTLNLNQ 170 >gi|242255840|gb|ACS88904.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHKVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 50/171 (29%), Positives = 83/171 (48%), Gaps = 12/171 (7%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHKVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEIN 375 D +DK + R A + I+ R L D ++S L +N Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSALNLN 169 >gi|242255822|gb|ACS88895.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERVYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 84/172 (48%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D ++S L +N+ Sbjct: 125 D--NDK----EKERVYAFSSFGMPKSFNISVSHNRGISALIDAILSALNLNQ 170 >gi|122700615|emb|CAL87896.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 85/162 (52%), Gaps = 6/162 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINSNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 K+D + Y S + IS H+ G S L I + Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAILR 164 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINSNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|39997324|ref|NP_953275.1| GTP-binding protein Era [Geobacter sulfurreducens PCA] gi|39984215|gb|AAR35602.1| GTP-binding protein Era [Geobacter sulfurreducens PCA] gi|298506261|gb|ADI84984.1| GTP-binding protein Era [Geobacter sulfurreducens KN400] Length = 299 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 50/174 (28%), Positives = 92/174 (52%), Gaps = 13/174 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 ++I+G PNVGKSTL NR++ +K+ + + P TR+R+ G + G +DT GI + Sbjct: 12 VSIIGRPNVGKSTLLNRILGEKIVITSDKPQTTRNRIQGIHNLPGAQIVFIDTPGIHHAR 71 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD-- 122 + + K M ++ +I E L++ L+++ + I L N+P+ +V NK+D Sbjct: 72 S-RLNKFMVEEALSSIREVDLVMLLVEANRAPGDQEREIAGLLPSVNVPVFLVVNKIDLI 130 Query: 123 --TRIAQR--NFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPL 172 +A+R + E++ F+E+V +SAE T E + ++ + P P+ Sbjct: 131 DPDILAERLTAYAELFP--FREVVPVSAE----TGENVERLVEVVRDTLPEGPV 178 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 44/163 (26%), Positives = 82/163 (50%), Gaps = 8/163 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 ++++GRPNVGKSTL+NR+LG ++T + TR+ + N I DT G+ Sbjct: 12 VSIIGRPNVGKSTLLNRILGEKIVITSDKPQTTRNRIQGIHNLPGAQIVFIDTPGIHHAR 71 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + V++++ S+R + ++L++A Q+ I + + V L +NK D Sbjct: 72 ---SRLNKFMVEEALSSIREVDLVMLLVEANRAPGDQEREIAGLLPSVNVPVFLVVNKID 128 Query: 326 MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLM 368 ++ ++L + R A L ++ +S TGE ++ L+ Sbjct: 129 LIDP--DILAE-RLTAYAELFPFREVV--PVSAETGENVERLV 166 >gi|149176952|ref|ZP_01855561.1| tRNA modification GTPase [Planctomyces maris DSM 8797] gi|148844207|gb|EDL58561.1| tRNA modification GTPase [Planctomyces maris DSM 8797] Length = 387 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 36/105 (34%), Positives = 69/105 (65%), Gaps = 3/105 (2%) Query: 203 PLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMR 262 P R+ + GRPNVGKS+LIN +LGY R + +++G TRD ++ + + PI+ DTAG+R Sbjct: 192 PWRVVLAGRPNVGKSSLINAILGYERSIVFNEAGTTRDVLTATTAIEGWPIQFSDTAGIR 251 Query: 263 KPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIV 307 + + ++LE ++++ Q +++ + ++L+D + P + D R++ Sbjct: 252 EQA---DALETTGIQRAEQMMQSSDCNLILIDVSQPEQADDQRLI 293 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 32/58 (55%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 + + + G PNVGKS+L N ++ + ++V N G TRD L I G DTAGI Sbjct: 193 WRVVLAGRPNVGKSSLINAILGYERSIVFNEAGTTRDVLTATTAIEGWPIQFSDTAGI 250 >gi|122702393|emb|CAL88387.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 85/162 (52%), Gaps = 6/162 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 K+D + Y S + IS H+ G S L + + Sbjct: 123 KIDNDKEKERSYAFSSFGMPKSFNISVSHNRGISSLIDAVLR 164 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|292806418|gb|ADE42339.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/162 (33%), Positives = 85/162 (52%), Gaps = 6/162 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 K+D + Y S + IS H+ G S L I + Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISALIDAILR 164 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122701591|emb|CAL88185.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 85/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A ++LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSNLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 83/172 (48%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----NLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D ++S L +N+ Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSALNLNQ 170 >gi|292806550|gb|ADE42405.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806552|gb|ADE42406.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/164 (32%), Positives = 85/164 (51%), Gaps = 6/164 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 K+D + Y S + IS H+ G S L I + Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISALIDAILNVL 166 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 85/172 (49%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D +++VL++N+ Sbjct: 125 D--NDK----EKERAYAFSSFGIPKSFNISVSHNRGISALIDAILNVLDLNQ 170 >gi|219684548|ref|ZP_03539491.1| tRNA modification GTPase TrmE [Borrelia garinii PBr] gi|219671910|gb|EED28964.1| tRNA modification GTPase TrmE [Borrelia garinii PBr] Length = 464 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 42/122 (34%), Positives = 72/122 (59%), Gaps = 2/122 (1%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+ + G+ N GKS+LFN +KK ++V ++PG TRD + ++G++FN+ DTAG+ D Sbjct: 224 TLVLAGSVNAGKSSLFNMFLKKDRSIVSSYPGTTRDYIEASFELDGILFNLFDTAGLRDA 283 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 N + + +++ I EA L++++ID + +T D K N I+ V NK+D Sbjct: 284 DNF-VERLGIEKSNSLIKEASLVIYVIDVSSNLTREDFLFID-SNKSNSKILFVLNKIDL 341 Query: 124 RI 125 +I Sbjct: 342 KI 343 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 49/185 (26%), Positives = 83/185 (44%), Gaps = 19/185 (10%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 I + + + G N GKS+L N L +R + S G TRD + S+ +FDTA Sbjct: 219 IDHGVTLVLAGSVNAGKSSLFNMFLKKDRSIVSSYPGTTRDYIEASFELDGILFNLFDTA 278 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R E L ++KS ++ I ++D + ++D +DS + ++ Sbjct: 279 GLRDADNFVERL---GIEKSNSLIKEASLVIYVIDVSSNLTREDFLFIDSN-KSNSKILF 334 Query: 320 ALNKWDM-------------VSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE-GLD 365 LNK D+ V + NL+ + TK ++ + + D IS E GLD Sbjct: 335 VLNKIDLKINKSTEEFVRSSVLNSSNLIM-ISTKNLEGIDILYDKIKTLISYEKVEIGLD 393 Query: 366 DLMVS 370 D+++S Sbjct: 394 DIIIS 398 >gi|296452686|ref|ZP_06894377.1| tRNA modification GTPase TrmE [Clostridium difficile NAP08] gi|296880062|ref|ZP_06904031.1| tRNA modification GTPase TrmE [Clostridium difficile NAP07] gi|296258468|gb|EFH05372.1| tRNA modification GTPase TrmE [Clostridium difficile NAP08] gi|296428929|gb|EFH14807.1| tRNA modification GTPase TrmE [Clostridium difficile NAP07] Length = 462 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 50/164 (30%), Positives = 88/164 (53%), Gaps = 9/164 (5%) Query: 167 YPNHPLEMIE----NNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINR 222 YP +E I +K +E + + S K + + L+ +VG+PNVGKS+L+N Sbjct: 184 YPEEDIEHITYQTLKDKTDELKKEIKKLYDTAESGKILREGLKTVIVGKPNVGKSSLLNS 243 Query: 223 LLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQS 282 +LG NR + G TRD + N K P++I DTAG+R I E + V++S +S Sbjct: 244 ILGENRAIVTDIPGTTRDVIEEFVNIKGIPLKIVDTAGIRDTDDIVEKI---GVERSKES 300 Query: 283 VRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 + + +++LDA+ ++D+ I++ + + ++ LNK D+ Sbjct: 301 FTSADLIVMVLDASRKLSEEDIEILEKLKD--KQTIVLLNKNDL 342 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 51/181 (28%), Positives = 91/181 (50%), Gaps = 4/181 (2%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PNVGKS+L N ++ + A+V + PG TRD + I G+ IVDTAGI D + Sbjct: 229 IVGKPNVGKSSLLNSILGENRAIVTDIPGTTRDVIEEFVNIKGIPLKIVDTAGIRDTDDI 288 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 + K ++++ + A LI+ ++D+ ++ D I L+ K +++ N + I Sbjct: 289 -VEKIGVERSKESFTSADLIVMVLDASRKLSEEDIEILEKLKDKQTIVLLNKNDLKQEIE 347 Query: 127 QRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK-IFKQKYPNHPLEMIENNKRNEESP 185 + + ++ I++ISA G EL I ++K N+ ++ N++ + Sbjct: 348 EEKI--LKYVENNSIIKISALQQEGIEELQDKIESMVYKGSIKNNSSLVVTNSRHKDALS 405 Query: 186 K 186 K Sbjct: 406 K 406 >gi|195954217|gb|ACG58814.1| YphC [Helicobacter pylori] Length = 170 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDXLLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNXNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERXYAFSSFGMPKSFNISVSHNRGISXLIDAIL 163 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDX 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNXNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|317452823|emb|CBL87847.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAARMSDLILYVVDGKS--IPSDEDIKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERVYAFSSFGIPKSFNISVSHNRGISTL 158 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + R + + ++D +IP + +D+++ VF T L +NK Sbjct: 70 LLSKEIKALNLK----AARMSDLILYVVDGKSIPSD-EDIKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|212697394|ref|ZP_03305522.1| hypothetical protein ANHYDRO_01964 [Anaerococcus hydrogenalis DSM 7454] gi|212675586|gb|EEB35193.1| hypothetical protein ANHYDRO_01964 [Anaerococcus hydrogenalis DSM 7454] Length = 454 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 67/205 (32%), Positives = 100/205 (48%), Gaps = 12/205 (5%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 I+G PNVGKS+L N L+ + A+V + PG TRD + + + I DTAGI + + Sbjct: 225 IIGKPNVGKSSLLNVLLNENRAIVTDIPGTTRDSITEYINLGNLTLKINDTAGIRETHDE 284 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 + ELA A LI+ + D I D I L+ KN II+ +D++I+ Sbjct: 285 VEKIGVQRSKELA-QGADLIIAIFDRSREIDEEDKIILDLLKGKNAIIILNKIDLDSKIS 343 Query: 127 QRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN--NKRNEES 184 + +F E ++ I+E S G +L IF IF K N MI N ++R S Sbjct: 344 KEDFDENFT-----IIETSMVSRDGIDKLEGAIFDIFDSKELNKESLMITNLRHERLLNS 398 Query: 185 PKENITSEGKSSVKNISKPLRIAVV 209 KE + +SS+K+I + I V Sbjct: 399 SKEKL----QSSLKDIKSFVPIDCV 419 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 41/131 (31%), Positives = 73/131 (55%), Gaps = 5/131 (3%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + ++G+PNVGKS+L+N LL NR + G TRDS++ N N ++I D Sbjct: 215 KLVKDGIETTIIGKPNVGKSSLLNVLLNENRAIVTDIPGTTRDSITEYINLGNLTLKIND 274 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ + +E+ V++S + + + I + D + +++D I+D + G Sbjct: 275 TAGIRETH---DEVEKIGVQRSKELAQGADLIIAIFDRSREIDEEDKIILDLL--KGKNA 329 Query: 318 VLALNKWDMVS 328 ++ LNK D+ S Sbjct: 330 IIILNKIDLDS 340 >gi|122700655|emb|CAL87916.1| GTPase [Helicobacter pylori] gi|122702851|emb|CAL88615.1| GTPase [Helicobacter pylori] gi|122702855|emb|CAL88617.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122702217|emb|CAL88299.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 85/162 (52%), Gaps = 6/162 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 ++ TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+ Sbjct: 6 VLKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM 65 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVS 118 A K+ ++K++ A + LIL+++D K+ P D + F + K N +V Sbjct: 66 A--KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVI 121 Query: 119 NKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 NK+D + Y S + IS H+ G S L I Sbjct: 122 NKIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISTLIDAIL 163 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122701641|emb|CAL88210.1| GTPase [Helicobacter pylori] gi|122702203|emb|CAL88292.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFSISVSHNRGISALIDAIL 163 Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 50/171 (29%), Positives = 83/171 (48%), Gaps = 12/171 (7%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEIN 375 D +DK + R A + I+ R L D ++S L +N Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFSISVSHNRGISALIDAILSALNLN 169 >gi|260551499|ref|ZP_05825683.1| GTP-binding protein 16S rRNA-binding, ribosome-associated GTPase [Acinetobacter sp. RUH2624] gi|260405493|gb|EEW98986.1| GTP-binding protein 16S rRNA-binding, ribosome-associated GTPase [Acinetobacter sp. RUH2624] Length = 342 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 55/176 (31%), Positives = 86/176 (48%), Gaps = 6/176 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N L+ +K+++ P TR ++ G + VDT G+ + Sbjct: 42 VAIVGRPNVGKSTLMNHLLGQKLSITSRKPQTTRHKIIGIDSREKMQAVYVDTPGMHKKE 101 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I K MN A+ + +L+LF+ID+ T D + L+ +P+I+V NK DT Sbjct: 102 VRAINKMMNRAAHSALRDVNLVLFVIDAYKW-TQNDDLVLEKLKNAEMPVILVINKADTF 160 Query: 125 IAQRNFYEIYS-----LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 +R + ++F EIV +SA L I K + P + + I Sbjct: 161 EDKREILPLIQERTKLMNFAEIVPVSALRGANLEHLSETIEKYLPYQPPLYSFDQI 216 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/130 (30%), Positives = 67/130 (51%), Gaps = 5/130 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS-VSISWNWKNHPIEIFDTAGMRKP 264 +A+VGRPNVGKSTL+N LLG +T + TR + I K + + DT GM K Sbjct: 42 VAIVGRPNVGKSTLMNHLLGQKLSITSRKPQTTRHKIIGIDSREKMQAVYV-DTPGMHK- 99 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 + ++ + + + ++R + ++DA + DL +++ + N V+L +NK Sbjct: 100 -KEVRAINKMMNRAAHSALRDVNLVLFVIDAYKWTQNDDL-VLEKLKNAEMPVILVINKA 157 Query: 325 DMVSDKLNLL 334 D DK +L Sbjct: 158 DTFEDKREIL 167 >gi|154149158|ref|YP_001406236.1| tRNA modification GTPase TrmE [Campylobacter hominis ATCC BAA-381] gi|205829130|sp|A7I145|MNME_CAMHC RecName: Full=tRNA modification GTPase mnmE gi|153805167|gb|ABS52174.1| tRNA modification GTPase TrmE [Campylobacter hominis ATCC BAA-381] Length = 466 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 44/146 (30%), Positives = 82/146 (56%), Gaps = 14/146 (9%) Query: 168 PNHPLEMIENNKRNEESPKENIT-----SEGKSSVKNISKPLRIAVVGRPNVGKSTLINR 222 PN L+ I+N ENIT ++ +S + + + ++A++G+PNVGKS+++N Sbjct: 203 PNDILDKIQN------LLSENITKIDEITQISASRRGLLEGFKVAIIGKPNVGKSSILNS 256 Query: 223 LLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQS 282 LL ++R + ++G TRD + + +H I I DTAG+RK S+E + S+++ Sbjct: 257 LLKFSRAIVSDEAGTTRDRIEENLQIGSHLIRIIDTAGIRKSEN---SVENIGISYSIKA 313 Query: 283 VRTCETTIVLLDATIPFEKQDLRIVD 308 + + + DA+ F+K+D +I + Sbjct: 314 ANEADIILAVFDASREFDKEDEKIFE 339 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 38/108 (35%), Positives = 57/108 (52%), Gaps = 1/108 (0%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + +AI+G PNVGKS++ N L+K A+V + G TRDR+ I + I+DTAGI Sbjct: 238 FKVAIIGKPNVGKSSILNSLLKFSRAIVSDEAGTTRDRIEENLQIGSHLIRIIDTAGIRK 297 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKK 110 +N S+ + A NEA +IL + D+ D I L+ + Sbjct: 298 SEN-SVENIGISYSIKAANEADIILAVFDASREFDKEDEKIFEILQNQ 344 >gi|122700823|emb|CAL88000.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/154 (34%), Positives = 82/154 (53%), Gaps = 6/154 (3%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGMA-- 66 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSNKM 121 K+ ++K++ A + LIL+++D K+ P D I F + K N +V NK+ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVINKI 124 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 D + Y S + IS H+ G S L Sbjct: 125 DNDKEKERAYAFSSFGMPKSFNISVSHNRGISAL 158 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD + +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|255657633|ref|ZP_05403042.1| tRNA modification GTPase TrmE [Clostridium difficile QCD-23m63] Length = 459 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 50/164 (30%), Positives = 88/164 (53%), Gaps = 9/164 (5%) Query: 167 YPNHPLEMIE----NNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINR 222 YP +E I +K +E + + S K + + L+ +VG+PNVGKS+L+N Sbjct: 181 YPEEDIEHITYQTLKDKTDELKKEIKKLYDTAESGKILREGLKTVIVGKPNVGKSSLLNS 240 Query: 223 LLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQS 282 +LG NR + G TRD + N K P++I DTAG+R I E + V++S +S Sbjct: 241 ILGENRAIVTDIPGTTRDVIEEFVNIKGIPLKIVDTAGIRDTDDIVEKI---GVERSKES 297 Query: 283 VRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 + + +++LDA+ ++D+ I++ + + ++ LNK D+ Sbjct: 298 FTSADLIVMVLDASRKLSEEDIEILEKLKD--KQTIVLLNKNDL 339 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 50/177 (28%), Positives = 90/177 (50%), Gaps = 4/177 (2%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PNVGKS+L N ++ + A+V + PG TRD + I G+ IVDTAGI D + Sbjct: 226 IVGKPNVGKSSLLNSILGENRAIVTDIPGTTRDVIEEFVNIKGIPLKIVDTAGIRDTDDI 285 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 + K ++++ + A LI+ ++D+ ++ D I L+ K +++ N + I Sbjct: 286 -VEKIGVERSKESFTSADLIVMVLDASRKLSEEDIEILEKLKDKQTIVLLNKNDLKQEIE 344 Query: 127 QRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK-IFKQKYPNHPLEMIENNKRNE 182 + + ++ I++ISA G EL I ++K N+ ++ N++ + Sbjct: 345 EEKI--LKYVENNSIIKISALQQEGIEELQDKIESMVYKGSIKNNSSLVVTNSRHKD 399 >gi|122702837|emb|CAL88608.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISTL 158 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122702273|emb|CAL88327.1| GTPase [Helicobacter pylori] Length = 168 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 56/159 (35%), Positives = 83/159 (52%), Gaps = 6/159 (3%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAI+G PNVGKS+LFNRL K+K+A+ + G TRD + +NG ++DT G+A Sbjct: 7 TIAILGQPNVGKSSLFNRLAKEKIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA-- 64 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSNKM 121 K+ ++K++ A + LIL+++D K+ P D I F + K N +V NK+ Sbjct: 65 KDAFLSKEIKAFNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVINKI 122 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 D + Y S + IS H+ G S L I Sbjct: 123 DNDKEKERAYAFSSFGMPKSFNISVSHNRGISVLIDAIL 161 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/128 (30%), Positives = 66/128 (51%), Gaps = 6/128 (4%) Query: 199 NISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDT 258 N S IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT Sbjct: 1 NTSTLKTIAILGQPNVGKSSLFNRLAKEKIAITSDFAGTTRDINKRKIALNGHEVELLDT 60 Query: 259 AGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAV 317 GM K + +++ ++ +K + S + + ++D +IP + +D+++ VF Sbjct: 61 GGMAKDAFLSKEIKAFNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNC 115 Query: 318 VLALNKWD 325 L +NK D Sbjct: 116 FLVINKID 123 >gi|323491197|ref|ZP_08096383.1| GTPase Era [Vibrio brasiliensis LMG 20546] gi|323314565|gb|EGA67643.1| GTPase Era [Vibrio brasiliensis LMG 20546] Length = 325 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 48/150 (32%), Positives = 82/150 (54%), Gaps = 8/150 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL NR++ +K+++ P TR R+ G VDT G+ + Sbjct: 34 VAIVGRPNVGKSTLLNRILGQKISITSRKPQTTRHRIMGVDTEGDYQAIYVDTPGLHIEE 93 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN ++++ +L+ FL+D T D + + L+K N P+++ NK+D Sbjct: 94 KRAINRLMNRAANSSLSDVNLVFFLVDG-THWTSDDEMVLTKLQKSNFPVVLCVNKVDN- 151 Query: 125 IAQRNFYEIY------SLDFKEIVEISAEH 148 + RN ++ ++F ++V ISA+H Sbjct: 152 VQDRNDVMLHMMEMSKKMEFVDVVPISAKH 181 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 77/169 (45%), Gaps = 9/169 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMR-KP 264 +A+VGRPNVGKSTL+NR+LG +T + TR + ++ DT G+ + Sbjct: 34 VAIVGRPNVGKSTLLNRILGQKISITSRKPQTTRHRIMGVDTEGDYQAIYVDTPGLHIEE 93 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 R L + S+ V L+D T + D ++ + + VVL +NK Sbjct: 94 KRAINRLMNRAANSSLSDVNLV---FFLVDGT-HWTSDDEMVLTKLQKSNFPVVLCVNKV 149 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 D V D+ D+ ++ ++ + + IS + G+ +D L V E Sbjct: 150 DNVQDR----NDVMLHMMEMSKKMEFVDVVPISAKHGKNIDVLRKHVRE 194 >gi|122702475|emb|CAL88428.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKEQAYAFSSFGIPKSFNISVSHNRGISAL 158 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122702549|emb|CAL88464.1| GTPase [Helicobacter pylori] gi|292806680|gb|ADE42470.1| GTP-binding protein-like protein [Helicobacter pylori] gi|317452843|emb|CBL87857.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 52/164 (31%), Positives = 86/164 (52%), Gaps = 6/164 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 K+D + Y S + IS H+ G S L + ++ Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISALIDAVLRVL 166 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122702865|emb|CAL88622.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/164 (32%), Positives = 84/164 (51%), Gaps = 6/164 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL + ++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARGRIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 K+D + Y S + IS H+ G S L I + Sbjct: 123 KIDNDKEKERSYAFSSFGMPKSFNISVSHNRGISALIDAILSVL 166 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 51/171 (29%), Positives = 85/171 (49%), Gaps = 12/171 (7%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARGRIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEIN 375 D +DK + R+ A + I+ R L D ++SVL +N Sbjct: 125 D--NDK----EKERSYAFSSFGMPKSFNISVSHNRGISALIDAILSVLNLN 169 >gi|122701519|emb|CAL88149.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/164 (32%), Positives = 85/164 (51%), Gaps = 6/164 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 K+D + Y S + IS H+ G S L I + Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFSISVSHNRGISALIDAILSVL 166 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 50/171 (29%), Positives = 83/171 (48%), Gaps = 12/171 (7%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEIN 375 D +DK + R A + I+ R L D ++SVL +N Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFSISVSHNRGISALIDAILSVLNLN 169 >gi|122700829|emb|CAL88003.1| GTPase [Helicobacter pylori] gi|122700843|emb|CAL88010.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/154 (34%), Positives = 82/154 (53%), Gaps = 6/154 (3%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGMA-- 66 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSNKM 121 K+ ++K++ A + LIL+++D K+ P D I F + K N +V NK+ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREIFKINPNCFLVINKI 124 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 D + Y S + IS H+ G S L Sbjct: 125 DNDKEKERAYAFSSFGMPKSFNISVSHNRGISAL 158 Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD + +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ +F L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREIFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|325662229|ref|ZP_08150844.1| GTP-binding protein Era [Lachnospiraceae bacterium 4_1_37FAA] gi|331086022|ref|ZP_08335105.1| GTP-binding protein Era [Lachnospiraceae bacterium 9_1_43BFAA] gi|325471481|gb|EGC74702.1| GTP-binding protein Era [Lachnospiraceae bacterium 4_1_37FAA] gi|330406945|gb|EGG86450.1| GTP-binding protein Era [Lachnospiraceae bacterium 9_1_43BFAA] Length = 298 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 63/196 (32%), Positives = 97/196 (49%), Gaps = 19/196 (9%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAII----NGVIFNIVDTAGI 60 + ++G PNVGKSTL N L+ +K+A+ N P TR+R+ Q ++ ++F VDT GI Sbjct: 10 VTLIGRPNVGKSTLMNYLIGQKIAITSNKPQTTRNRI--QTVLTTEEGQIVF--VDTPGI 65 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 KN + + M + E +NE ++L+L++ I + I L+K P+I+V NK Sbjct: 66 HKAKN-KLGEYMVNVAERTLNEVDVVLWLVEPSTFIGAGERHIAEQLKKVKTPVILVINK 124 Query: 121 MDTRIAQR--NFYEIYS--LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIE 176 D + F + Y DF IV +SA T EL VI Q P P E Sbjct: 125 TDKVKKEEVFTFIDAYKNIYDFAAIVPVSARSGENTDELIRVIM----QHLPYGPQFYDE 180 Query: 177 NNKRNEESPKENITSE 192 + ++ P+ I +E Sbjct: 181 DTITDQ--PQRQIVAE 194 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 42/169 (24%), Positives = 80/169 (47%), Gaps = 10/169 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 + ++GRPNVGKSTL+N L+G +T ++ TR+ + + I DT G+ K Sbjct: 10 VTLIGRPNVGKSTLMNYLIGQKIAITSNKPQTTRNRIQTVLTTEEGQIVFVDTPGIHKAK 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + V + +++ + + L++ + + I + + V+L +NK D Sbjct: 70 N---KLGEYMVNVAERTLNEVDVVLWLVEPSTFIGAGERHIAEQLKKVKTPVILVINKTD 126 Query: 326 MV-SDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 V +++ D A KN+ I +S R+GE D+L+ +++ Sbjct: 127 KVKKEEVFTFID----AYKNIYDFAAIV--PVSARSGENTDELIRVIMQ 169 >gi|295111068|emb|CBL27818.1| tRNA modification GTPase TrmE [Synergistetes bacterium SGP1] Length = 456 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/173 (31%), Positives = 92/173 (53%), Gaps = 24/173 (13%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + +R+ + GRPNVGKS+L+N LL +R + + G TRD + + ++ PI + DTA Sbjct: 217 LREGIRVVISGRPNVGKSSLLNALLKQSRAIVTAVPGTTRDIIEETVTYRGIPIRLVDTA 276 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R PS + +E ++++ +++ + + LLD + P E D + S T ++++ Sbjct: 277 GLRVPS---DEVEASGIERARAALKQADICLWLLDGSAPLEDADRDYIRS-LGTRESIIV 332 Query: 320 ALNKWD----MVSDKLN-LLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDL 367 LNK D + D L ++ + RT A IS +TGEGLD L Sbjct: 333 -LNKADKALAVTEDDLRAIVPEGRTLA--------------ISAKTGEGLDAL 370 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/123 (33%), Positives = 63/123 (51%), Gaps = 5/123 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + I G PNVGKS+L N L+K+ A+V PG TRD + G+ +VDTAG+ Sbjct: 223 VVISGRPNVGKSSLLNALLKQSRAIVTAVPGTTRDIIEETVTYRGIPIRLVDTAGLRVPS 282 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNI-PIIIVSNKMDT 123 + + ++ A+ +A + L+L+D A P + A ++R IIV NK D Sbjct: 283 D-EVEASGIERARAALKQADICLWLLDGSA---PLEDADRDYIRSLGTRESIIVLNKADK 338 Query: 124 RIA 126 +A Sbjct: 339 ALA 341 >gi|292806606|gb|ADE42433.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/164 (32%), Positives = 85/164 (51%), Gaps = 6/164 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 K+D + Y S + IS H+ G S L + + Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLSVL 166 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 84/172 (48%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D ++SVL +N+ Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLSVLNLNQ 170 >gi|122702755|emb|CAL88567.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 84/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + ++NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKQKIVLNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISAL 158 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKQKIVLNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122701633|emb|CAL88206.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMSKSFNISVSHNRGISALIDAIL 163 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122700821|emb|CAL87999.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/159 (33%), Positives = 83/159 (52%), Gaps = 6/159 (3%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGMA-- 66 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSNKM 121 K+ ++K++ A + LIL+++D K+ P D I F + K N +V NK+ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVINKI 124 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 D + Y S + IS H+ G S L I Sbjct: 125 DNDKEKERAYAFSSFGIPKSFNISVSHNRGISALIDAIL 163 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD + +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122700729|emb|CAL87953.1| GTPase [Helicobacter pylori] gi|122701679|emb|CAL88229.1| GTPase [Helicobacter pylori] gi|122702581|emb|CAL88480.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISTL 158 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122700645|emb|CAL87911.1| GTPase [Helicobacter pylori] gi|122702599|emb|CAL88489.1| GTPase [Helicobacter pylori] gi|122702781|emb|CAL88580.1| GTPase [Helicobacter pylori] gi|122702785|emb|CAL88582.1| GTPase [Helicobacter pylori] gi|242255848|gb|ACS88908.1| GTPase [Helicobacter pylori] gi|242255854|gb|ACS88911.1| GTPase [Helicobacter pylori] gi|242255870|gb|ACS88919.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|292806654|gb|ADE42457.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806694|gb|ADE42477.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 83/172 (48%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D ++S L +N+ Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSALNLNQ 170 >gi|269836202|ref|YP_003318430.1| tRNA modification GTPase TrmE [Sphaerobacter thermophilus DSM 20745] gi|269785465|gb|ACZ37608.1| tRNA modification GTPase TrmE [Sphaerobacter thermophilus DSM 20745] Length = 466 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 57/175 (32%), Positives = 92/175 (52%), Gaps = 17/175 (9%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 ++IA+VGRPNVGKS+L+N LL R + +G TRD ++ S N + P + DTAG+ Sbjct: 223 VQIAIVGRPNVGKSSLLNTLLRAERAIVTDIAGTTRDVIAESINLQGIPATLIDTAGIAD 282 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVD----SVFNTGH-AVV 318 I +E+ + +S +++ T I +LD ++P D R+ + V + GH +V Sbjct: 283 TEDI---IERMGIDRSRRALDTAGLAIFVLDGSMPPTPDDFRVAELLQRRVASDGHDRLV 339 Query: 319 LALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 L LNK D+ D+ + D + P + +S RTGEG+ L ++ E Sbjct: 340 LVLNKRDL-PDRHD--HDEIRALLPGAPVV------EVSTRTGEGIAQLEATLAE 385 Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 52/166 (31%), Positives = 92/166 (55%), Gaps = 10/166 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKS+L N L++ + A+V + G TRD + + G+ ++DTAGIAD + Sbjct: 225 IAIVGRPNVGKSSLLNTLLRAERAIVTDIAGTTRDVIAESINLQGIPATLIDTAGIADTE 284 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKK-----NIPIIIVSN 119 + I + D++ A++ A L +F++D TP D + L+++ + +++V N Sbjct: 285 DI-IERMGIDRSRRALDTAGLAIFVLDGSMPPTPDDFRVAELLQRRVASDGHDRLVLVLN 343 Query: 120 KMDTRIAQRNFY-EIYS-LDFKEIVEISAEHDLGTSELHSVIFKIF 163 K D + R+ + EI + L +VE+S G ++L + + + Sbjct: 344 KRD--LPDRHDHDEIRALLPGAPVVEVSTRTGEGIAQLEATLAEAL 387 >gi|312127538|ref|YP_003992412.1| gtp-binding protein era [Caldicellulosiruptor hydrothermalis 108] gi|311777557|gb|ADQ07043.1| GTP-binding protein Era [Caldicellulosiruptor hydrothermalis 108] Length = 300 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 52/149 (34%), Positives = 83/149 (55%), Gaps = 10/149 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A++G PNVGKSTL N LV KK++++ P TR+ + G + +DT G+ K Sbjct: 8 VALIGRPNVGKSTLMNYLVGKKISIISPKPQTTRNSIKGILTLEDAQIIFIDTPGVHPPK 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDS-KAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 N + + M +E + E LIL+++++ GI P+D AI L++ P I+V NK D Sbjct: 68 N-KLGEYMVKVSEKTLKEVDLILYIVEAIDNGIGPWDEAIIEKLKEVETPKILVLNKSD- 125 Query: 124 RIAQRNFYEIY------SLDFKEIVEISA 146 +A + EI L+F+ IV+I+A Sbjct: 126 -LASKENMEILKSIFSTKLNFESIVDIAA 153 Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust. Identities = 36/124 (29%), Positives = 60/124 (48%), Gaps = 4/124 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKSTL+N L+G + + TR+S+ ++ I DT G+ P Sbjct: 8 VALIGRPNVGKSTLMNYLVGKKISIISPKPQTTRNSIKGILTLEDAQIIFIDTPGVHPPK 67 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATI-PFEKQDLRIVDSVFNTGHAVVLALNKW 324 K +K+++ V + +D I P+ D I++ + +L LNK Sbjct: 68 NKLGEYMVKVSEKTLKEVDLILYIVEAIDNGIGPW---DEAIIEKLKEVETPKILVLNKS 124 Query: 325 DMVS 328 D+ S Sbjct: 125 DLAS 128 >gi|122700787|emb|CAL87982.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/164 (32%), Positives = 85/164 (51%), Gaps = 6/164 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 K+D + Y S + IS H+ G S L + + Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLSVL 166 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 85/172 (49%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D ++SVL++N+ Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLSVLDLNQ 170 >gi|150021216|ref|YP_001306570.1| tRNA modification GTPase TrmE [Thermosipho melanesiensis BI429] gi|205829182|sp|A6LMN4|MNME_THEM4 RecName: Full=tRNA modification GTPase mnmE gi|149793737|gb|ABR31185.1| tRNA modification GTPase TrmE [Thermosipho melanesiensis BI429] Length = 441 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 55/137 (40%), Positives = 78/137 (56%), Gaps = 8/137 (5%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 + IVG PN GKSTL NRL+ + A+V + PG TRD + G+ ING+ F IVDTAGI + Sbjct: 213 VMTIVGKPNSGKSTLLNRLLLEDRAIVTDIPGTTRDVIKGEIEINGIRFVIVDTAGIRET 272 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKN-IPIIIVSNKMD 122 K+ + K +++ I +A +ILF++D+ G T D I + N IP V NK D Sbjct: 273 KDV-VEKIGIERSLKEIQKADVILFVLDATTGFTKEDKLILRKIEGGNYIP---VWNKCD 328 Query: 123 TRIAQRNFYEIYSLDFK 139 NF +I+ + K Sbjct: 329 ---EGNNFNKIFDGEIK 342 Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 33/98 (33%), Positives = 55/98 (56%), Gaps = 3/98 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 + +VG+PN GKSTL+NRLL +R + G TRD + I DTAG+R+ Sbjct: 214 MTIVGKPNSGKSTLLNRLLLEDRAIVTDIPGTTRDVIKGEIEINGIRFVIVDTAGIRETK 273 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + E + +++S++ ++ + + +LDAT F K+D Sbjct: 274 DVVEKI---GIERSLKEIQKADVILFVLDATTGFTKED 308 >gi|122702523|emb|CAL88451.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISAL 158 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122702247|emb|CAL88314.1| GTPase [Helicobacter pylori] gi|122702289|emb|CAL88335.1| GTPase [Helicobacter pylori] gi|122702401|emb|CAL88391.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKITLNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISAL 158 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKITLNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122702233|emb|CAL88307.1| GTPase [Helicobacter pylori] gi|122702601|emb|CAL88490.1| GTPase [Helicobacter pylori] gi|122702603|emb|CAL88491.1| GTPase [Helicobacter pylori] gi|122702609|emb|CAL88494.1| GTPase [Helicobacter pylori] gi|122702671|emb|CAL88525.1| GTPase [Helicobacter pylori] gi|122702673|emb|CAL88526.1| GTPase [Helicobacter pylori] gi|122702847|emb|CAL88613.1| GTPase [Helicobacter pylori] gi|122702863|emb|CAL88621.1| GTPase [Helicobacter pylori] gi|122702885|emb|CAL88632.1| GTPase [Helicobacter pylori] gi|242255866|gb|ACS88917.1| GTPase [Helicobacter pylori] gi|242255868|gb|ACS88918.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 50/171 (29%), Positives = 83/171 (48%), Gaps = 12/171 (7%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEIN 375 D +DK + R A + I+ R L D ++S L +N Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSALNLN 169 >gi|295424887|ref|ZP_06817602.1| GTP-binding protein Era [Lactobacillus amylolyticus DSM 11664] gi|295065453|gb|EFG56346.1| GTP-binding protein Era [Lactobacillus amylolyticus DSM 11664] Length = 302 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 52/162 (32%), Positives = 88/162 (54%), Gaps = 8/162 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL NRLV +K+A+ N P TR+R+ G + + VDT GI Sbjct: 12 VAIVGRPNVGKSTLMNRLVGEKVAITSNKPQTTRNRISGIYTSDDMQVVFVDTPGIFK-P 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLID-SKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + + + M+ + ++N+ L++F+++ +AG D + L+K +P+ ++ NK+D Sbjct: 71 HSKLDEYMDKASYSSLNDVDLVMFMVEPDEAGKD--DKFVADLLQKVKVPVFLIINKVDE 128 Query: 124 RIAQRNFYEIYSL----DFKEIVEISAEHDLGTSELHSVIFK 161 + I S DF E + +SA +G +L + + K Sbjct: 129 IHPDKLLPIIDSYRKLGDFAEFLPVSATEGIGIPDLLTALNK 170 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 51/171 (29%), Positives = 86/171 (50%), Gaps = 19/171 (11%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP- 264 +A+VGRPNVGKSTL+NRL+G +T ++ TR+ +S + + + DT G+ KP Sbjct: 12 VAIVGRPNVGKSTLMNRLVGEKVAITSNKPQTTRNRISGIYTSDDMQVVFVDTPGIFKPH 71 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE--KQDLRIVDSVFNTGHAVVLALN 322 S++ E ++ K S S+ + + +++ P E K D + D + V L +N Sbjct: 72 SKLDEYMD----KASYSSLNDVDLVMFMVE---PDEAGKDDKFVADLLQKVKVPVFLIIN 124 Query: 323 KWDMVS-DKLNLLQDLRTKAIKNLPQIGDIY-INTISGRTGEGLDDLMVSV 371 K D + DKL I + ++GD +S G G+ DL+ ++ Sbjct: 125 KVDEIHPDKL-------LPIIDSYRKLGDFAEFLPVSATEGIGIPDLLTAL 168 >gi|122701447|emb|CAL88113.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 52/162 (32%), Positives = 85/162 (52%), Gaps = 6/162 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + L+L+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLVLYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 K+D + Y S + IS H+ G S L I + Sbjct: 123 KIDNDREKERAYAFSSFGMPKSFNISVSHNRGISALIDAILR 164 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLVLYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122702193|emb|CAL88287.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFSISVSHNRGISALIDAIL 163 Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 50/171 (29%), Positives = 84/171 (49%), Gaps = 12/171 (7%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEIN 375 D +DK + R A + I+ R L D ++S L++N Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFSISVSHNRGISALIDAILSALDLN 169 >gi|293609825|ref|ZP_06692127.1| GTP-binding protein,16S rRNA-binding [Acinetobacter sp. SH024] gi|292828277|gb|EFF86640.1| GTP-binding protein,16S rRNA-binding [Acinetobacter sp. SH024] Length = 342 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 55/176 (31%), Positives = 86/176 (48%), Gaps = 6/176 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N L+ +K+++ P TR ++ G + VDT G+ + Sbjct: 42 VAIVGRPNVGKSTLMNHLLGQKLSITSRKPQTTRHKIIGIDSREKMQAVYVDTPGMHKKE 101 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I K MN A+ + +L+LF+ID+ T D + L+ +P+I+V NK DT Sbjct: 102 VRAINKMMNRAAHSALRDVNLVLFVIDAYKW-TQNDDLVLEKLKNAEMPVILVINKADTF 160 Query: 125 IAQRNFYEIYS-----LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 +R + ++F EIV +SA L I K + P + + I Sbjct: 161 EDKREILPLIQERAKLMNFAEIVPVSALRGANLEHLSETIEKYLPYQPPLYSFDQI 216 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 41/137 (29%), Positives = 71/137 (51%), Gaps = 5/137 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS-VSISWNWKNHPIEIFDTAGMRKP 264 +A+VGRPNVGKSTL+N LLG +T + TR + I K + + DT GM K Sbjct: 42 VAIVGRPNVGKSTLMNHLLGQKLSITSRKPQTTRHKIIGIDSREKMQAVYV-DTPGMHK- 99 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 + ++ + + + ++R + ++DA + DL +++ + N V+L +NK Sbjct: 100 -KEVRAINKMMNRAAHSALRDVNLVLFVIDAYKWTQNDDL-VLEKLKNAEMPVILVINKA 157 Query: 325 DMVSDKLNLLQDLRTKA 341 D DK +L ++ +A Sbjct: 158 DTFEDKREILPLIQERA 174 >gi|4467653|emb|CAB37778.1| GTP-binding protein homologue [Helicobacter pylori] Length = 170 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG +DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVECLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+DT + Y S + IS H+ G S L I Sbjct: 123 KIDTDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 82/172 (47%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVECLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D ++S L +N+ Sbjct: 125 D--TDK----EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSALNLNQ 170 >gi|4467677|emb|CAB37790.1| GTP-binding protein homologue [Helicobacter pylori] Length = 170 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/154 (35%), Positives = 82/154 (53%), Gaps = 6/154 (3%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG +DT G+A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVEFLDTGGMA-- 66 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSNKM 121 K+ ++K++ A + LIL+++D K+ P D I F + K N +V NK+ Sbjct: 67 KDALLSKEIKALNFKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVINKI 124 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 DT + Y S + IS H+ G S L Sbjct: 125 DTDKEKERAYAFSSFGIPKSFNISVSHNRGISAL 158 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/126 (30%), Positives = 64/126 (50%), Gaps = 6/126 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVEFLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNFKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 DMVSDK 330 D +K Sbjct: 125 DTDKEK 130 >gi|292806440|gb|ADE42350.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISTLIDAIL 163 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|156975791|ref|YP_001446698.1| GTP-binding protein Era [Vibrio harveyi ATCC BAA-1116] gi|156527385|gb|ABU72471.1| hypothetical protein VIBHAR_03535 [Vibrio harveyi ATCC BAA-1116] Length = 320 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 49/150 (32%), Positives = 82/150 (54%), Gaps = 8/150 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N+++ +K+++ P TR R+ G VDT G+ + Sbjct: 29 IAIVGRPNVGKSTLLNKILGQKISITSRKPQTTRHRIMGVDTEGDYQAIYVDTPGLHIEE 88 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN ++++ +L+ FL+D T D + + L+K N P+++ NK+D Sbjct: 89 KRAINRLMNRAANSSLSDVNLVFFLVDG-THWTNDDEMVLTKLQKSNFPVVLCVNKVDN- 146 Query: 125 IAQRNFYEIY------SLDFKEIVEISAEH 148 + RN ++ +DF ++V ISA+H Sbjct: 147 VQDRNEVMLHMMDMSKKMDFVDVVPISAKH 176 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 38/126 (30%), Positives = 59/126 (46%), Gaps = 5/126 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMR-KP 264 IA+VGRPNVGKSTL+N++LG +T + TR + ++ DT G+ + Sbjct: 29 IAIVGRPNVGKSTLLNKILGQKISITSRKPQTTRHRIMGVDTEGDYQAIYVDTPGLHIEE 88 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 R L + S+ V L+D T + D ++ + + VVL +NK Sbjct: 89 KRAINRLMNRAANSSLSDVNLV---FFLVDGT-HWTNDDEMVLTKLQKSNFPVVLCVNKV 144 Query: 325 DMVSDK 330 D V D+ Sbjct: 145 DNVQDR 150 >gi|122702787|emb|CAL88583.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 83/161 (51%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 G ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 KG--ALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKGA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122701637|emb|CAL88208.1| GTPase [Helicobacter pylori] gi|122701643|emb|CAL88211.1| GTPase [Helicobacter pylori] gi|122701645|emb|CAL88212.1| GTPase [Helicobacter pylori] gi|122701659|emb|CAL88219.1| GTPase [Helicobacter pylori] gi|122701661|emb|CAL88220.1| GTPase [Helicobacter pylori] gi|122701663|emb|CAL88221.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFSISVSHNRGISALIDAIL 163 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 50/171 (29%), Positives = 83/171 (48%), Gaps = 12/171 (7%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEIN 375 D +DK + R A + I+ R L D ++S L +N Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFSISVSHNRGISALIDAILSALNLN 169 >gi|325123051|gb|ADY82574.1| GTP-binding protein Era [Acinetobacter calcoaceticus PHEA-2] Length = 340 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 55/176 (31%), Positives = 86/176 (48%), Gaps = 6/176 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N L+ +K+++ P TR ++ G + VDT G+ + Sbjct: 40 VAIVGRPNVGKSTLMNHLLGQKLSITSRKPQTTRHKIIGIDSREKMQAVYVDTPGMHKKE 99 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I K MN A+ + +L+LF+ID+ T D + L+ +P+I+V NK DT Sbjct: 100 VRAINKMMNRAAHSALRDVNLVLFVIDAYKW-TQNDDLVLEKLKNAEMPVILVINKADTF 158 Query: 125 IAQRNFYEIYS-----LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 +R + ++F EIV +SA L I K + P + + I Sbjct: 159 EDKREILPLIQERAKLMNFAEIVPVSALRGANLEHLSETIEKYLPYQPPLYSFDQI 214 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 41/137 (29%), Positives = 71/137 (51%), Gaps = 5/137 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS-VSISWNWKNHPIEIFDTAGMRKP 264 +A+VGRPNVGKSTL+N LLG +T + TR + I K + + DT GM K Sbjct: 40 VAIVGRPNVGKSTLMNHLLGQKLSITSRKPQTTRHKIIGIDSREKMQAVYV-DTPGMHK- 97 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 + ++ + + + ++R + ++DA + DL +++ + N V+L +NK Sbjct: 98 -KEVRAINKMMNRAAHSALRDVNLVLFVIDAYKWTQNDDL-VLEKLKNAEMPVILVINKA 155 Query: 325 DMVSDKLNLLQDLRTKA 341 D DK +L ++ +A Sbjct: 156 DTFEDKREILPLIQERA 172 >gi|257464226|ref|ZP_05628605.1| GTP-binding protein Era [Fusobacterium sp. D12] gi|317061746|ref|ZP_07926231.1| GTP-binding protein era [Fusobacterium sp. D12] gi|313687422|gb|EFS24257.1| GTP-binding protein era [Fusobacterium sp. D12] Length = 296 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 43/118 (36%), Positives = 69/118 (58%), Gaps = 1/118 (0%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTL N+LV +K+A+V + G TRD + G + G + +DT GI K Sbjct: 6 IAVVGRPNVGKSTLMNKLVAEKVAIVSDKAGTTRDNIKGILNVQGKQYIFIDTPGIHKPK 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + + + M D + +A ILFL+D I+ D + +++ P++++ NK+D Sbjct: 66 HL-LGEYMTDIAIRSFKDADAILFLLDGTQEISTGDFFVWEKIKETRKPVVVLVNKID 122 Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 41/124 (33%), Positives = 65/124 (52%), Gaps = 3/124 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IAVVGRPNVGKSTL+N+L+ + ++G TRD++ N + DT G+ KP Sbjct: 6 IAVVGRPNVGKSTLMNKLVAEKVAIVSDKAGTTRDNIKGILNVQGKQYIFIDTPGIHKPK 65 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + L + +++S + + + LLD T D + + + T VV+ +NK D Sbjct: 66 HL---LGEYMTDIAIRSFKDADAILFLLDGTQEISTGDFFVWEKIKETRKPVVVLVNKID 122 Query: 326 MVSD 329 +SD Sbjct: 123 KISD 126 >gi|242255968|gb|ACS88968.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKSLNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGAPKSFNISVSHNRGISAL 158 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF T L +NK Sbjct: 70 LLSKEIKSLNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122700661|emb|CAL87919.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERIYAFSSFGMPKSFNISVSHNRGISAL 158 Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 85/172 (49%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D ++S L++N+ Sbjct: 125 D--NDK----EKERIYAFSSFGMPKSFNISVSHNRGISALIDAVLSALDLNQ 170 >gi|122702573|emb|CAL88476.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISAL 158 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122701467|emb|CAL88123.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 85/162 (52%), Gaps = 6/162 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 K+D + Y S + IS H+ G S L + + Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLR 164 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|57167879|ref|ZP_00367019.1| tRNA modification GTPase TrmE [Campylobacter coli RM2228] gi|305432095|ref|ZP_07401262.1| tRNA modification GTPase TrmE [Campylobacter coli JV20] gi|57021001|gb|EAL57665.1| tRNA modification GTPase TrmE [Campylobacter coli RM2228] gi|304445179|gb|EFM37825.1| tRNA modification GTPase TrmE [Campylobacter coli JV20] Length = 442 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 41/131 (31%), Positives = 73/131 (55%), Gaps = 3/131 (2%) Query: 196 SVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEI 255 S K + + +IA+VG+PNVGKS+L+N LL Y R + +G TRD++ S+ H + I Sbjct: 207 SKKGLIEGFKIAIVGKPNVGKSSLLNALLSYKRAIVSDIAGTTRDTIEESFKLGTHLLRI 266 Query: 256 FDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGH 315 DTAG+R+ + +EQ ++ S +S+ + + + D + +++D I + + Sbjct: 267 IDTAGIRESK---DEIEQIGIELSKKSIEDADIILAIFDNSRKKDEEDENIFKLLSQSDK 323 Query: 316 AVVLALNKWDM 326 + LNK D+ Sbjct: 324 KIFYLLNKSDL 334 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 47/148 (31%), Positives = 78/148 (52%), Gaps = 7/148 (4%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + IAIVG PNVGKS+L N L+ K A+V + G TRD + + + I+DTAGI + Sbjct: 215 FKIAIVGKPNVGKSSLLNALLSYKRAIVSDIAGTTRDTIEESFKLGTHLLRIIDTAGIRE 274 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 K+ I + + ++ +I +A +IL + D+ D I L + + I + NK D Sbjct: 275 SKD-EIEQIGIELSKKSIEDADIILAIFDNSRKKDEEDENIFKLLSQSDKKIFYLLNKSD 333 Query: 123 TRIAQRNFYEIYSLDFKEIVEISAEHDL 150 + F + +DF +E+S ++D+ Sbjct: 334 LK---TQFDKPCDIDF---IELSVQNDI 355 >gi|122702225|emb|CAL88303.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/164 (32%), Positives = 86/164 (52%), Gaps = 6/164 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A ++LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSNLILYVVDGKS--IPGDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 K+D + Y S + IS H+ G S L I + Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSVL 166 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 83/172 (48%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----NLILYVVDGKSIPGD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D ++SVL +N+ Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSVLNLNQ 170 >gi|122702267|emb|CAL88324.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNNKEKERSYAFSSFGVPKSFNISVSHNRGISAL 158 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122700689|emb|CAL87933.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 84/172 (48%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D ++S L +N+ Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSALNLNQ 170 >gi|122700675|emb|CAL87926.1| GTPase [Helicobacter pylori] gi|122701503|emb|CAL88141.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREIFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ +F T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREIFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|156086578|ref|XP_001610698.1| GTPase [Babesia bovis T2Bo] gi|154797951|gb|EDO07130.1| GTPase, putative [Babesia bovis] Length = 622 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 59/184 (32%), Positives = 87/184 (47%), Gaps = 28/184 (15%) Query: 5 IAIVGAPNVGKSTLFNRL------VKKKM-AVVGNHPGITRDRLYGQAIINGVIFNIVDT 57 + ++G NVGKS+LFN L V K M +VV ++PG TRD YGQ I G +VDT Sbjct: 3 VTLLGRSNVGKSSLFNALAGSNVSVPKFMKSVVSSNPGTTRDAKYGQIFIKGKRITLVDT 62 Query: 58 AGIADG--------KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRK 109 GI +CS + + + L+LF++D + GITP D I S L+ Sbjct: 63 GGIESAVMPPGLGSSSCSNRFSILEHALKTAGRSDLVLFVVDGQEGITPLDMTIASNLKD 122 Query: 110 K----NIPIIIVSNKMDTRIAQRNFYE--------IYSLDFKEIVEISAEHDLGTSELHS 157 + + + +V NK+D+ +YE YSL + + +S G L S Sbjct: 123 QCSSTSSVLKLVVNKLDSE-GSEEYYEAVSKCISDCYSLGLGDPIFVSTHDRHGAQRLRS 181 Query: 158 VIFK 161 +I K Sbjct: 182 IISK 185 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 70/330 (21%), Positives = 144/330 (43%), Gaps = 47/330 (14%) Query: 171 PLEMIENNKRNEESPKENITSEGKSSVKNIS-KPLRIAVVGRPNVGKSTLINRLLGYNRL 229 P E+ ++ +S + +I + K S+ +PLR+ ++G +S L L G Sbjct: 288 PKEVDAEDEAETDSAEPDIPLKTKFSIDTKPIRPLRVVLLGSVGGCQSRLAALLAG---- 343 Query: 230 LTGSQSGI---TRDSVSISWN-----WKNH--------PIEIFDTAGMRKPSRITESLEQ 273 +G GI T D++S +W+ W+ H P+EI+ A + + SL + Sbjct: 344 -SGLDVGIEDKTHDTLSPNWHQFTSEWQRHGATGTTIQPMEIYIAAALN----LGGSLGR 398 Query: 274 KTVKKSMQSVRTCETTIVLL---DAT-----IPFEKQDLRIVDSV-FNTGHAVVLALNK- 323 + ++M +R + I+ + D T +P +K+ + + + VV +++ Sbjct: 399 VSSAQTMALLRRSDIAIMCIGDCDETNTWRVVPTKKETAWLTRIIRLHKPSLVVTPVSQH 458 Query: 324 ------WDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTIS-GRTGEGLDDLMVSVLEINK 376 DMVS K + + +R ++ + D ++ RT + + ++S+ + + Sbjct: 459 PNRKMVLDMVS-KSHEFESIRIHPLQIVETTSDTPPPAVNLNRTVKRIQRDVISLADSTE 517 Query: 377 LWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPES 436 + TS LN+WL+ + PPP +K+ Q + PP+F+++ P+ Sbjct: 518 ---RVLETSVLNNWLRSFLAKWPPPWHEGSKVNVKFAAQCATCPPTFVVWSNVCASFPQH 574 Query: 437 YKRYLINRLRINFSLSGIPIRMCFQSSKNP 466 Y R + + F GIP++ +++ P Sbjct: 575 YLRQMKRAMSEEFGFQGIPLKFILRTTAQP 604 >gi|122701575|emb|CAL88177.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 85/162 (52%), Gaps = 6/162 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 ++ TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+ Sbjct: 6 VLKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM 65 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVS 118 A K+ ++K++ A + LIL+++D K+ P D + F + K N +V Sbjct: 66 A--KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVI 121 Query: 119 NKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 NK+D + Y S + IS H+ G S L I Sbjct: 122 NKIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 84/172 (48%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D ++S L +N+ Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSALNLNQ 170 >gi|122702309|emb|CAL88345.1| GTPase [Helicobacter pylori] gi|122702409|emb|CAL88395.1| GTPase [Helicobacter pylori] Length = 168 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 55/159 (34%), Positives = 83/159 (52%), Gaps = 6/159 (3%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAI+G PNVGKS+LFNRL K+++A+ + G TRD + +NG ++DT G+A Sbjct: 7 TIAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA-- 64 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSNKM 121 K+ ++K++ A + LIL+++D K + P D I F + K N +V NK+ Sbjct: 65 KDAFLSKEIKSFNLKAAQMSDLILYVVDGK--LIPSDEDIKLFREVFKINPNCFLVINKI 122 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 D + Y S + IS H+ G S L I Sbjct: 123 DNDKEKERTYAFSSFGMPKSFNISVSHNRGISVLIDAIL 161 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 37/127 (29%), Positives = 63/127 (49%), Gaps = 4/127 (3%) Query: 199 NISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDT 258 N S IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT Sbjct: 1 NTSTLKTIAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDT 60 Query: 259 AGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVV 318 GM K + +++ ++ +K + S + + ++D + +D+++ VF Sbjct: 61 GGMAKDAFLSKEIKSFNLKAAQMS----DLILYVVDGKLIPSDEDIKLFREVFKINPNCF 116 Query: 319 LALNKWD 325 L +NK D Sbjct: 117 LVINKID 123 >gi|122701577|emb|CAL88178.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISTLIDAIL 163 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|242255884|gb|ACS88926.1| GTPase [Helicobacter pylori] gi|242255886|gb|ACS88927.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 KN ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KNALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISTL 158 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKNA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|319792226|ref|YP_004153866.1| GTP-binding protein era [Variovorax paradoxus EPS] gi|315594689|gb|ADU35755.1| GTP-binding protein Era [Variovorax paradoxus EPS] Length = 322 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 43/118 (36%), Positives = 65/118 (55%), Gaps = 2/118 (1%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N LV +K+++ TR R+ G + F VDT G Sbjct: 30 IAIVGKPNVGKSTLLNALVGQKISITSRKAQTTRHRITGMRTLGATQFVFVDTPGFQTLH 89 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 ++ K +N + A+ + LILF++++ TP D + L K IP ++++NK+D Sbjct: 90 ANALNKSLNKTVQGAVGDVDLILFVVEA-GSFTPADERVLKLL-GKGIPTVLLANKLD 145 Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust. Identities = 38/139 (27%), Positives = 64/139 (46%), Gaps = 4/139 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA+VG+PNVGKSTL+N L+G +T ++ TR ++ DT G + Sbjct: 30 IAIVGKPNVGKSTLLNALVGQKISITSRKAQTTRHRITGMRTLGATQFVFVDTPGFQT-- 87 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + + K++ K++Q I+ + F D R++ + G VL NK D Sbjct: 88 -LHANALNKSLNKTVQGAVGDVDLILFVVEAGSFTPADERVL-KLLGKGIPTVLLANKLD 145 Query: 326 MVSDKLNLLQDLRTKAIKN 344 V + ++ L+T K+ Sbjct: 146 NVHRRGDIAPWLQTMQAKH 164 >gi|242255842|gb|ACS88905.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122701595|emb|CAL88187.1| GTPase [Helicobacter pylori] gi|122702771|emb|CAL88575.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 50/171 (29%), Positives = 84/171 (49%), Gaps = 12/171 (7%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEIN 375 D +DK + R A + I+ R L D ++S L++N Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSALDLN 169 >gi|122700879|emb|CAL88028.1| GTPase [Helicobacter pylori] gi|122701623|emb|CAL88201.1| GTPase [Helicobacter pylori] gi|122701677|emb|CAL88228.1| GTPase [Helicobacter pylori] gi|122702155|emb|CAL88268.1| GTPase [Helicobacter pylori] gi|122702241|emb|CAL88311.1| GTPase [Helicobacter pylori] gi|122702369|emb|CAL88375.1| GTPase [Helicobacter pylori] gi|122702397|emb|CAL88389.1| GTPase [Helicobacter pylori] gi|122702511|emb|CAL88446.1| GTPase [Helicobacter pylori] gi|317453543|emb|CBL87881.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISAL 158 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|220933188|ref|YP_002510096.1| tRNA modification GTPase TrmE [Halothermothrix orenii H 168] gi|219994498|gb|ACL71101.1| tRNA modification GTPase TrmE [Halothermothrix orenii H 168] Length = 463 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 55/158 (34%), Positives = 89/158 (56%), Gaps = 11/158 (6%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PNVGKS+L N LV++ A+V + PG TRD + I G+ I+DTAGI + ++ Sbjct: 230 IVGKPNVGKSSLLNSLVQENRAIVTDIPGTTRDIIEEYINIRGIPLRIIDTAGIRETRDM 289 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK--MDTR 124 + K ++T ++ EA L+LF++D G+T D I ++ K P+I++ NK +D Sbjct: 290 -VEKIGVEKTRNSLREADLVLFMLDVAQGLTEEDIKIYDMVKDK--PMIVLVNKTDLDRE 346 Query: 125 IAQRNFYEIYSLDFKE--IVEISAEHDLGTSELHSVIF 160 I ++ + FKE ++ IS + ++G L I Sbjct: 347 IDEKKIKD----HFKEHPLLWISVKEEIGLDNLKEAII 380 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 40/123 (32%), Positives = 70/123 (56%), Gaps = 5/123 (4%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 L+ +VG+PNVGKS+L+N L+ NR + G TRD + N + P+ I DTAG+R+ Sbjct: 226 LKAVIVGKPNVGKSSLLNSLVQENRAIVTDIPGTTRDIIEEYINIRGIPLRIIDTAGIRE 285 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 + E + V+K+ S+R + + +LD ++D++I D V + +++ +NK Sbjct: 286 TRDMVEKI---GVEKTRNSLREADLVLFMLDVAQGLTEEDIKIYDMVKD--KPMIVLVNK 340 Query: 324 WDM 326 D+ Sbjct: 341 TDL 343 >gi|292806500|gb|ADE42380.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 85/162 (52%), Gaps = 6/162 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREIFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 K+D + Y S + IS H+ G S L + + Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISALIDAVLR 164 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ +F L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREIFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122701547|emb|CAL88163.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 85/162 (52%), Gaps = 6/162 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYIVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 K+D + Y S + IS H+ G S L I + Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAILR 164 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYIVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|146296963|ref|YP_001180734.1| GTP-binding protein Era [Caldicellulosiruptor saccharolyticus DSM 8903] gi|189037251|sp|A4XKV8|ERA_CALS8 RecName: Full=GTPase Era gi|145410539|gb|ABP67543.1| GTP-binding protein Era [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 300 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 51/149 (34%), Positives = 83/149 (55%), Gaps = 10/149 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A++G PNVGKSTL N V KK++++ P TR+ + G ++ +DT G+ K Sbjct: 8 VALIGRPNVGKSTLMNYFVGKKISIISPKPQTTRNSIKGILTLDDAQIIFIDTPGVHPPK 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDS-KAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 N + + M +E + E LIL+++++ +GI P+D AI L++ P I+V NK D Sbjct: 68 N-KLGEYMVKVSEKTLKEVDLILYIVEAIDSGIGPWDEAILEKLKEVQTPKILVLNKAD- 125 Query: 124 RIAQRNFYEIYS------LDFKEIVEISA 146 +A + EI L F+ I+EI+A Sbjct: 126 -LASKENIEILKSLFSGRLSFEFIIEIAA 153 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 35/124 (28%), Positives = 59/124 (47%), Gaps = 4/124 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKSTL+N +G + + TR+S+ + I DT G+ P Sbjct: 8 VALIGRPNVGKSTLMNYFVGKKISIISPKPQTTRNSIKGILTLDDAQIIFIDTPGVHPPK 67 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATI-PFEKQDLRIVDSVFNTGHAVVLALNKW 324 K +K+++ V + +D+ I P+ D I++ + +L LNK Sbjct: 68 NKLGEYMVKVSEKTLKEVDLILYIVEAIDSGIGPW---DEAILEKLKEVQTPKILVLNKA 124 Query: 325 DMVS 328 D+ S Sbjct: 125 DLAS 128 >gi|122702687|emb|CAL88533.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 85/162 (52%), Gaps = 6/162 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 K+D + Y S + IS H+ G S L + + Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLR 164 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122702675|emb|CAL88527.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 85/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + ++NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIVLNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISALIDAIL 163 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIVLNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122702377|emb|CAL88379.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKAFNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISAL 158 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF T L +NK Sbjct: 70 LLSKEIKAFNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122701453|emb|CAL88116.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYIVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISTLIDAIL 163 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYIVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122701523|emb|CAL88151.1| GTPase [Helicobacter pylori] gi|122701525|emb|CAL88152.1| GTPase [Helicobacter pylori] gi|122701531|emb|CAL88155.1| GTPase [Helicobacter pylori] gi|122702611|emb|CAL88495.1| GTPase [Helicobacter pylori] gi|122702773|emb|CAL88576.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 84/172 (48%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D ++S L +N+ Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSTLNLNQ 170 >gi|317453539|emb|CBL87879.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 85/162 (52%), Gaps = 6/162 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDTLLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 K+D + Y S + IS H+ G S L + + Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISALIDAVLR 164 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDT 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|294790832|ref|ZP_06755990.1| GTP-binding protein Era [Scardovia inopinata F0304] gi|294458729|gb|EFG27082.1| GTP-binding protein Era [Scardovia inopinata F0304] Length = 343 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 62/203 (30%), Positives = 96/203 (47%), Gaps = 22/203 (10%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTL N LV K++A+ + P TR + + +VDT GI + Sbjct: 27 IAVVGRPNVGKSTLINSLVGKQVAITSSKPETTRKAIRAIVTRDDCQLVLVDTPGIHRPR 86 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKK------------NI 112 + K++ND + ++ ++ I FL+ + I P D I S LR++ Sbjct: 87 TV-LGKRLNDIVDESLADSDAIAFLLPANQEIGPGDRRILSRLRQQFSYKDQSGQWQWRK 145 Query: 113 PIIIVSNKMDTRIAQRNFYEIYSLD----FKEIVEISAEHDLGTSELHSVIFKIFKQKYP 168 P+I V K+D +I +D F ++V +SA E + ++F+Q P Sbjct: 146 PLIGVITKIDYLKKNDLVNKIIEIDQFGHFTQLVPVSALQSDNVDE----VLRVFRQAVP 201 Query: 169 NHPLEMIENNKRNEESPKENITS 191 PL M + +EE PKE I Sbjct: 202 EGPL-MYPVEQISEEPPKETIAE 223 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 36/59 (61%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP 264 IAVVGRPNVGKSTLIN L+G +T S+ TR ++ + + + DT G+ +P Sbjct: 27 IAVVGRPNVGKSTLINSLVGKQVAITSSKPETTRKAIRAIVTRDDCQLVLVDTPGIHRP 85 >gi|292806620|gb|ADE42440.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 85/162 (52%), Gaps = 6/162 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLRAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 K+D + Y S + IS H+ G S L I + Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAILR 164 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ ++ + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLRAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122702593|emb|CAL88486.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISTLIDAIL 163 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122702497|emb|CAL88439.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122702743|emb|CAL88561.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/164 (32%), Positives = 85/164 (51%), Gaps = 6/164 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 K+D + Y S + IS H+ G S L I + Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISTLIDAILSVL 166 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 50/171 (29%), Positives = 84/171 (49%), Gaps = 12/171 (7%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEIN 375 D +DK + R A + I+ R L D ++SVL++N Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISTLIDAILSVLDLN 169 >gi|122702705|emb|CAL88542.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREIFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISTLIDAIL 163 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ +F L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREIFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122701599|emb|CAL88189.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYIVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISTL 158 Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYIVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122700907|emb|CAL88042.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 52/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L + Sbjct: 123 KIDNDKEKERTYAFSSFGMPKSFNISVSHNRGISALIDAVL 163 Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 52/172 (30%), Positives = 86/172 (50%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + RT A + I+ R L D ++S L++NK Sbjct: 125 D--NDK----EKERTYAFSSFGMPKSFNISVSHNRGISALIDAVLSALDLNK 170 >gi|122700885|emb|CAL88031.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREIFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISALIDAIL 163 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ +F L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREIFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|119486976|ref|ZP_01620848.1| tRNA modification GTPase [Lyngbya sp. PCC 8106] gi|119455905|gb|EAW37039.1| tRNA modification GTPase [Lyngbya sp. PCC 8106] Length = 469 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 43/118 (36%), Positives = 73/118 (61%), Gaps = 3/118 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKS+L N + A+V + PG TRD + Q ++ G+ ++DTAGI + + Sbjct: 228 VAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRNSE 287 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + + K ++++ A A L+L ID++AG T D I + + ++ P+I++ NK+D Sbjct: 288 D-QVEKIGIERSQTAAKLADLVLLTIDAEAGWTESDEEI--YQQVQHRPLILILNKID 342 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 48/167 (28%), Positives = 86/167 (51%), Gaps = 8/167 (4%) Query: 163 FKQKYPNHPLEMIE-NNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLIN 221 F++ P PL + E ++ N+ S + +I E + + L++A+VGRPNVGKS+L+N Sbjct: 186 FEEDLP--PLNVPEIVSQVNQISAELSILIETAEKGERLRSGLKVAIVGRPNVGKSSLLN 243 Query: 222 RLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQ 281 +R + G TRD V P+++ DTAG+R + +E+ +++S Sbjct: 244 AWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRNSE---DQVEKIGIERSQT 300 Query: 282 SVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVS 328 + + + ++ +DA + + D I V + ++L LNK D VS Sbjct: 301 AAKLADLVLLTIDAEAGWTESDEEIYQQVQH--RPLILILNKIDRVS 345 >gi|78044593|ref|YP_358878.1| tRNA modification GTPase TrmE [Carboxydothermus hydrogenoformans Z-2901] gi|123577255|sp|Q3AG56|MNME_CARHZ RecName: Full=tRNA modification GTPase mnmE gi|77996708|gb|ABB15607.1| tRNA modification GTPase TrmE [Carboxydothermus hydrogenoformans Z-2901] Length = 461 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 57/162 (35%), Positives = 88/162 (54%), Gaps = 6/162 (3%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T I G PNVGKS+L N L++KK A+V + PG TRD + + G+ IVDTAGI + Sbjct: 224 TAVIAGKPNVGKSSLLNALLRKKRAIVTDIPGTTRDVIEDYLNLKGIPVKIVDTAGIRET 283 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 ++ + K ++T +N+A + LF++D GI D I S + K ++I NK+D Sbjct: 284 EDL-VEKLGVEKTREYLNQADVTLFVVDVSIGIDEDDEKILSLINKDKSLLVI--NKIDL 340 Query: 124 RIAQRNFYEIYSL--DFKEIVEISAEHDLGTSELHSVIFKIF 163 + NF E Y++ K V SA + G L + +++I Sbjct: 341 LQGKVNF-EQYAVKTGIKNFVPFSARNFEGLEILENKLYEIL 381 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 57/175 (32%), Positives = 92/175 (52%), Gaps = 19/175 (10%) Query: 208 VVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRI 267 + G+PNVGKS+L+N LL R + G TRD + N K P++I DTAG+R+ + Sbjct: 227 IAGKPNVGKSSLLNALLRKKRAIVTDIPGTTRDVIEDYLNLKGIPVKIVDTAGIRETEDL 286 Query: 268 TESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMV 327 E L V+K+ + + + T+ ++D +I ++ D +I+ S+ N + +L +NK D++ Sbjct: 287 VEKL---GVEKTREYLNQADVTLFVVDVSIGIDEDDEKIL-SLINKDKS-LLVINKIDLL 341 Query: 328 SDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRI 382 K+N Q IKN S R EGL+ +LE NKL++ I Sbjct: 342 QGKVNFEQYAVKTGIKNFV--------PFSARNFEGLE-----ILE-NKLYEILI 382 >gi|292806480|gb|ADE42370.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/164 (32%), Positives = 85/164 (51%), Gaps = 6/164 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYIVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 K+D + Y S + IS H+ G S L I + Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISTLIDAILSVL 166 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 85/172 (49%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYIVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D ++SVL++N+ Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISTLIDAILSVLDLNQ 170 >gi|190893979|ref|YP_001980521.1| GTP-binding protein in thiophene and furan oxidation [Rhizobium etli CIAT 652] gi|226704784|sp|B3PS53|MNME_RHIE6 RecName: Full=tRNA modification GTPase mnmE gi|190699258|gb|ACE93343.1| GTP-binding protein in thiophene and furan oxidation [Rhizobium etli CIAT 652] Length = 439 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 59/224 (26%), Positives = 113/224 (50%), Gaps = 30/224 (13%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + + I GAPN GKS+L N L K+++A+V + G TRD L+ I+G + + DTAG+ + Sbjct: 219 FKVVIAGAPNAGKSSLMNALAKREVAIVTDIAGTTRDVLHVDLDIDGYLVKLYDTAGLRE 278 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 ++ + + + +A+ +A L+L L+D I P D ++ +P + V K D Sbjct: 279 AED-RVEIEGVRRARVALRDADLVLLLVDMSNPIIPADL-------EQALPHVTVGTKKD 330 Query: 123 TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 + Y++ +IS G EL +I ++ K++Y L I + +R++ Sbjct: 331 LIETASDRYDL---------QISTTTGEGLPELRDLIGRVVKERYGGQSL-AIPSRQRHK 380 Query: 183 ESPKENIT------SEGKSSVKNISKPLRIA------VVGRPNV 214 +S + + S+G ++++ ++ LR+A + GR +V Sbjct: 381 DSLAKCLAALDAAISQGSANLELRTEQLRLAAEYLGRITGRVDV 424 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 41/173 (23%), Positives = 83/173 (47%), Gaps = 15/173 (8%) Query: 192 EGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNH 251 E S+ + I ++ + G PN GKS+L+N L + +G TRD + + + + Sbjct: 207 EAASAGEIIRDGFKVVIAGAPNAGKSSLMNALAKREVAIVTDIAGTTRDVLHVDLDIDGY 266 Query: 252 PIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVF 311 ++++DTAG+R+ + +E + V+++ ++R + ++L+D + P DL Sbjct: 267 LVKLYDTAGLREAE---DRVEIEGVRRARVALRDADLVLLLVDMSNPIIPADLEQALPHV 323 Query: 312 NTGHAVVLALNKWDMV---SDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTG 361 G K D++ SD+ +L + T + LP++ D+ + R G Sbjct: 324 TVG-------TKKDLIETASDRYDL--QISTTTGEGLPELRDLIGRVVKERYG 367 >gi|122702767|emb|CAL88573.1| GTPase [Helicobacter pylori] gi|122702769|emb|CAL88574.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREIFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 83/172 (48%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ +F L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREIFKINPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D ++S L +NK Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSALNLNK 170 >gi|122702739|emb|CAL88559.1| GTPase [Helicobacter pylori] gi|292806494|gb|ADE42377.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISALIDAIL 163 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122702789|emb|CAL88584.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISTLIDAIL 163 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|242255890|gb|ACS88929.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/164 (32%), Positives = 85/164 (51%), Gaps = 6/164 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYIVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 K+D + Y S + IS H+ G S L I + Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAILNVL 166 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 85/172 (49%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYIVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D +++VL++N+ Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILNVLDLNQ 170 >gi|122702883|emb|CAL88631.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISVLIDAIL 163 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122701583|emb|CAL88181.1| GTPase [Helicobacter pylori] gi|122702269|emb|CAL88325.1| GTPase [Helicobacter pylori] gi|292806628|gb|ADE42444.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806638|gb|ADE42449.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERSYAFSSFGIPKSFNISVSHNRGISAL 158 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|150015731|ref|YP_001307985.1| GTP-binding protein Era [Clostridium beijerinckii NCIMB 8052] gi|189037260|sp|A6LRP9|ERA_CLOB8 RecName: Full=GTPase Era gi|149902196|gb|ABR33029.1| GTP-binding protein Era [Clostridium beijerinckii NCIMB 8052] Length = 298 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 55/148 (37%), Positives = 81/148 (54%), Gaps = 9/148 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNI--VDTAGIAD 62 + IVG PNVGKSTL N ++ +K+++V N P TR+ + Q I+ G + + VDT GI Sbjct: 7 VTIVGRPNVGKSTLLNYIMGEKLSIVSNKPQTTRNNI--QTILTGDDYQMIFVDTPGIHK 64 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 K+ + + M + + + + L+LFL + I D I LR K P+ +V NK+D Sbjct: 65 PKH-KLGEYMVNSAKESTKDVDLVLFLTNPDEEIGKGDKFILETLRDKKCPVFLVLNKVD 123 Query: 123 TRIAQR--NFYEIYSLDFK--EIVEISA 146 R E+YS +FK EIV ISA Sbjct: 124 ESTQDRVAKSLEMYSKEFKFAEIVPISA 151 Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 81/164 (49%), Gaps = 7/164 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 + +VGRPNVGKSTL+N ++G + ++ TR+++ ++ + DT G+ KP Sbjct: 7 VTIVGRPNVGKSTLLNYIMGEKLSIVSNKPQTTRNNIQTILTGDDYQMIFVDTPGIHKPK 66 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + V + +S + + + L + K D I++++ + V L LNK D Sbjct: 67 H---KLGEYMVNSAKESTKDVDLVLFLTNPDEEIGKGDKFILETLRDKKCPVFLVLNKVD 123 Query: 326 -MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLM 368 D++ ++ +K K +I + I+ I G+ + L +LM Sbjct: 124 ESTQDRVAKSLEMYSKEFK-FAEI--VPISAIKGKNVDVLVELM 164 >gi|291536994|emb|CBL10106.1| tRNA modification GTPase trmE [Roseburia intestinalis M50/1] Length = 411 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 52/157 (33%), Positives = 85/157 (54%), Gaps = 4/157 (2%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 I+G PN GKS+L N LV ++ A+V + G TRD L Q +NG+I N++DTAGI + + Sbjct: 179 IIGKPNAGKSSLLNTLVGEERAIVTDIAGTTRDVLEEQINLNGIILNVIDTAGIRETDDV 238 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 + K D+ + +NEA L ++++D+ + D I L+ + I++ NK D Sbjct: 239 -VEKIGVDRAKKYLNEADLAIYVVDTSTQLDENDFEIMELLKDRK--AIVLLNKSDLTPV 295 Query: 127 QRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 + LD K+++ ISA+ G E I ++F Sbjct: 296 TDSESIRKHLD-KKMIAISAKEQTGIEEFEETIREMF 331 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 50/207 (24%), Positives = 99/207 (47%), Gaps = 24/207 (11%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + + ++G+PN GKS+L+N L+G R + +G TRD + N + + D Sbjct: 169 KILKEGISTVIIGKPNAGKSSLLNTLVGEERAIVTDIAGTTRDVLEEQINLNGIILNVID 228 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ + E + V ++ + + + I ++D + ++ D I++ + A+ Sbjct: 229 TAGIRETDDVVEKI---GVDRAKKYLNEADLAIYVVDTSTQLDENDFEIME-LLKDRKAI 284 Query: 318 VLALNKWDM--VSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEIN 375 VL LNK D+ V+D ++ + L K I IS + G+++ ++ E+ Sbjct: 285 VL-LNKSDLTPVTDSESIRKHLDKKMI------------AISAKEQTGIEEFEETIREM- 330 Query: 376 KLWKTRITTS---YLNSWLQKTQLQNP 399 + +T + Y+ + KT LQ Sbjct: 331 -FFTGEVTFNDEVYITNIRHKTALQEA 356 >gi|292806618|gb|ADE42439.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREIFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L + Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAVL 163 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ +F L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREIFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|292806582|gb|ADE42421.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERTYAFSSFGIPKSFNISVSHNRGISAL 158 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|242255834|gb|ACS88901.1| GTPase [Helicobacter pylori] gi|242255836|gb|ACS88902.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 85/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A++ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAIISDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/171 (28%), Positives = 81/171 (47%), Gaps = 12/171 (7%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL + +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAIISDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEIN 375 D +DK + R A + I+ R L D ++S L +N Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSALNLN 169 >gi|122701377|emb|CAL88078.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/164 (32%), Positives = 85/164 (51%), Gaps = 6/164 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 K+D + Y S + IS H+ G S L I + Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSVL 166 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 84/172 (48%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D ++SVL +N+ Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSVLNLNQ 170 >gi|122702229|emb|CAL88305.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 50/171 (29%), Positives = 83/171 (48%), Gaps = 12/171 (7%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEIN 375 D +DK + R A + I+ R L D ++S L +N Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSALNLN 169 >gi|122702131|emb|CAL88256.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYIVDGKS--IPSDEDIKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L + Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAVL 163 Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYIVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|87123548|ref|ZP_01079399.1| tRNA modification GTPase TrmE [Synechococcus sp. RS9917] gi|86169268|gb|EAQ70524.1| tRNA modification GTPase TrmE [Synechococcus sp. RS9917] Length = 460 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 46/122 (37%), Positives = 70/122 (57%), Gaps = 10/122 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI---A 61 +A+VG PNVGKS+L NRL +++ A+V + PG TRD L + ++ GV ++DTAGI Sbjct: 229 VALVGRPNVGKSSLLNRLSRRERAIVTDLPGTTRDLLESEIVLEGVPITLLDTAGIRATT 288 Query: 62 DG-KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 D + IA+ + A+ A L+L L D G T D A+ + + +P ++V NK Sbjct: 289 DAVEQLGIARSHD-----ALASADLVLLLFDLSEGWTADDQALRQRI-PEEVPHLLVGNK 342 Query: 121 MD 122 D Sbjct: 343 AD 344 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 36/107 (33%), Positives = 61/107 (57%), Gaps = 4/107 (3%) Query: 188 NITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWN 247 + ++G+ S + LR+A+VGRPNVGKS+L+NRL R + G TRD + Sbjct: 212 QLVADGERSAA-LRSGLRVALVGRPNVGKSSLLNRLSRRERAIVTDLPGTTRDLLESEIV 270 Query: 248 WKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLD 294 + PI + DTAG+R T+++EQ + +S ++ + + ++L D Sbjct: 271 LEGVPITLLDTAGIRA---TTDAVEQLGIARSHDALASADLVLLLFD 314 >gi|312793589|ref|YP_004026512.1| gtp-binding protein era [Caldicellulosiruptor kristjanssonii 177R1B] gi|312875914|ref|ZP_07735904.1| GTP-binding protein Era [Caldicellulosiruptor lactoaceticus 6A] gi|311797395|gb|EFR13734.1| GTP-binding protein Era [Caldicellulosiruptor lactoaceticus 6A] gi|312180729|gb|ADQ40899.1| GTP-binding protein Era [Caldicellulosiruptor kristjanssonii 177R1B] Length = 300 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 52/149 (34%), Positives = 83/149 (55%), Gaps = 10/149 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A++G PNVGKSTL N LV KK++++ P TR+ + G + +DT G+ K Sbjct: 8 VALIGRPNVGKSTLMNYLVGKKISIISPKPQTTRNSIKGILTLEDAQIIFIDTPGVHPPK 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDS-KAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 N + + M +E + E LIL+++++ GI P+D AI L++ P I+V NK D Sbjct: 68 N-KLGEYMVKVSEKTLKEVDLILYIVEAIDNGIGPWDEAIIEKLKEVETPKILVLNKSD- 125 Query: 124 RIAQRNFYEIY------SLDFKEIVEISA 146 +A + EI L+F+ IV+I+A Sbjct: 126 -LASKENIEILKSIFSTKLNFESIVDIAA 153 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 36/124 (29%), Positives = 60/124 (48%), Gaps = 4/124 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKSTL+N L+G + + TR+S+ ++ I DT G+ P Sbjct: 8 VALIGRPNVGKSTLMNYLVGKKISIISPKPQTTRNSIKGILTLEDAQIIFIDTPGVHPPK 67 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATI-PFEKQDLRIVDSVFNTGHAVVLALNKW 324 K +K+++ V + +D I P+ D I++ + +L LNK Sbjct: 68 NKLGEYMVKVSEKTLKEVDLILYIVEAIDNGIGPW---DEAIIEKLKEVETPKILVLNKS 124 Query: 325 DMVS 328 D+ S Sbjct: 125 DLAS 128 >gi|292806554|gb|ADE42407.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806556|gb|ADE42408.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREIFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ +F L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREIFKINPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D ++S L +N+ Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSALNLNQ 170 >gi|238926048|ref|YP_002939566.1| tRNA modification GTPase TrmE [Eubacterium rectale ATCC 33656] gi|238877725|gb|ACR77432.1| tRNA modification GTPase TrmE [Eubacterium rectale ATCC 33656] Length = 458 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 49/157 (31%), Positives = 84/157 (53%), Gaps = 4/157 (2%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 I+G PN GKS+L N LV A+V + G TRD L Q I G+ N+VDTAGI ++ Sbjct: 226 IIGKPNAGKSSLLNVLVGTDRAIVTDIAGTTRDVLEEQINIGGITLNLVDTAGIRSTEDV 285 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 + E A N A LI++++DS + D+ I +F++ K I++ + + ++++ Sbjct: 286 VEKIGVKKAMEHA-NGADLIIYVVDSSVALDDNDYDIINFIKDKKAVILLNKSDLASKVS 344 Query: 127 QRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 + ++ K ++ +SA+ G EL I ++F Sbjct: 345 ADDIKKLVD---KTVISVSAKESSGIDELSDTIKEMF 378 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 43/167 (25%), Positives = 85/167 (50%), Gaps = 15/167 (8%) Query: 208 VVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRI 267 ++G+PN GKS+L+N L+G +R + +G TRD + N + + DTAG+R + Sbjct: 226 IIGKPNAGKSSLLNVLVGTDRAIVTDIAGTTRDVLEEQINIGGITLNLVDTAGIRSTEDV 285 Query: 268 TESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMV 327 E + VKK+M+ + I ++D+++ + D I++ F V+ LNK D+ Sbjct: 286 VEKI---GVKKAMEHANGADLIIYVVDSSVALDDNDYDIIN--FIKDKKAVILLNKSDLA 340 Query: 328 SDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEI 374 S + ++ ++ D + ++S + G+D+L ++ E+ Sbjct: 341 S----------KVSADDIKKLVDKTVISVSAKESSGIDELSDTIKEM 377 >gi|122702125|emb|CAL88253.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKAFNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISAL 158 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF T L +NK Sbjct: 70 LLSKEIKAFNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|242255964|gb|ACS88966.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRRIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISTL 158 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRRIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|225377164|ref|ZP_03754385.1| hypothetical protein ROSEINA2194_02810 [Roseburia inulinivorans DSM 16841] gi|225211069|gb|EEG93423.1| hypothetical protein ROSEINA2194_02810 [Roseburia inulinivorans DSM 16841] Length = 302 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 58/167 (34%), Positives = 89/167 (53%), Gaps = 13/167 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRL---YGQAIINGVIFNIVDTAGIA 61 + I+G PNVGKSTL N L+ +K+A+ N P TR+R+ Y ++F +DT GI Sbjct: 10 VTIIGRPNVGKSTLMNHLIGQKIAITSNKPQTTRNRIQTVYTDMERGQIVF--LDTPGIH 67 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 KN + + M + E +NE +IL+L++ I + I L+K P+I++ NK+ Sbjct: 68 RAKN-KLGEYMVNVAEHTLNEVDVILWLVEPSNFIGAGEQHIIEQLKKVKTPVILIINKV 126 Query: 122 DTRIAQR--NFYEIYS--LDFKEIVEISAEHDLGTSELHSVIFKIFK 164 DT ++ + + Y DF EI+ SA L L +VI IFK Sbjct: 127 DTVDREKIVEYIDTYRKVYDFAEIIPASA---LRAKNLDTVIDMIFK 170 Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust. Identities = 31/124 (25%), Positives = 60/124 (48%), Gaps = 4/124 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISW-NWKNHPIEIFDTAGMRKP 264 + ++GRPNVGKSTL+N L+G +T ++ TR+ + + + + I DT G+ Sbjct: 10 VTIIGRPNVGKSTLMNHLIGQKIAITSNKPQTTRNRIQTVYTDMERGQIVFLDTPGIH-- 67 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 R L + V + ++ + + L++ + + I++ + V+L +NK Sbjct: 68 -RAKNKLGEYMVNVAEHTLNEVDVILWLVEPSNFIGAGEQHIIEQLKKVKTPVILIINKV 126 Query: 325 DMVS 328 D V Sbjct: 127 DTVD 130 >gi|225387778|ref|ZP_03757542.1| hypothetical protein CLOSTASPAR_01548 [Clostridium asparagiforme DSM 15981] gi|225046112|gb|EEG56358.1| hypothetical protein CLOSTASPAR_01548 [Clostridium asparagiforme DSM 15981] Length = 303 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 58/166 (34%), Positives = 85/166 (51%), Gaps = 14/166 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIING----VIFNIVDTAGI 60 + ++G PNVGKSTL N L+ +K+A+ + P TR+R+ Q + +IF +DT GI Sbjct: 12 VTLIGRPNVGKSTLMNHLIGQKIAITSDKPQTTRNRI--QTVYTDERGQIIF--LDTPGI 67 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 KN + + M E + E +IL+L++ I + I L K P+I+V NK Sbjct: 68 HKAKN-KLGEYMVTVAERTLTEVDVILWLVEPSTFIGAGERHIAEQLNKVKTPVILVINK 126 Query: 121 MDTRIAQRN---FYEIYS--LDFKEIVEISAEHDLGTSELHSVIFK 161 +DT Q F + Y F EIV +SA D T L +IFK Sbjct: 127 IDTVKKQEEILTFIDAYKDVCQFAEIVPLSALKDRNTDLLTELIFK 172 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 40/168 (23%), Positives = 79/168 (47%), Gaps = 6/168 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 + ++GRPNVGKSTL+N L+G +T + TR+ + + + I DT G+ K Sbjct: 12 VTLIGRPNVGKSTLMNHLIGQKIAITSDKPQTTRNRIQTVYTDERGQIIFLDTPGIHKAK 71 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + V + +++ + + L++ + + I + + V+L +NK D Sbjct: 72 N---KLGEYMVTVAERTLTEVDVILWLVEPSTFIGAGERHIAEQLNKVKTPVILVINKID 128 Query: 326 MVSDKLNLLQDLRTKAIKNLPQIGDIY-INTISGRTGEGLDDLMVSVL 372 V + +L + A K++ Q +I ++ + R + L +L+ L Sbjct: 129 TVKKQEEILTFI--DAYKDVCQFAEIVPLSALKDRNTDLLTELIFKYL 174 >gi|122702387|emb|CAL88384.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGVPKSFNISVSHNRGISAL 158 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122701415|emb|CAL88097.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 85/162 (52%), Gaps = 6/162 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREIFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 K+D + Y S + IS H+ G S L I + Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAILR 164 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ +F L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREIFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|292806626|gb|ADE42443.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/164 (32%), Positives = 85/164 (51%), Gaps = 6/164 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 K+D + Y S + IS H+ G S L + + Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISALIDAVLSVL 166 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 84/172 (48%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D ++SVL +N+ Sbjct: 125 D--NDK----EKERAYAFSSFGIPKSFNISVSHNRGISALIDAVLSVLNLNQ 170 >gi|292806436|gb|ADE42348.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 85/162 (52%), Gaps = 6/162 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 K+D + Y S + IS H+ G S L I + Sbjct: 123 KIDNDKEKERVYAFSSFGIPKSFNISVSHNRGISALIDAILR 164 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|242255858|gb|ACS88913.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERSYAFSSFGMPKSFNISVSHNRGISTLIDAIL 163 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122702735|emb|CAL88557.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKEQAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122700899|emb|CAL88038.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 85/162 (52%), Gaps = 6/162 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINSNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 K+D + Y S + IS H+ G S L I + Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAILR 164 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINSNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|4467647|emb|CAB37775.1| GTP-binding protein homologue [Helicobacter pylori] gi|4467649|emb|CAB37776.1| GTP-binding protein homologue [Helicobacter pylori] gi|99905845|gb|ABF68617.1| YphC [Helicobacter pylori] gi|99905847|gb|ABF68618.1| YphC [Helicobacter pylori] gi|122700649|emb|CAL87913.1| GTPase [Helicobacter pylori] gi|122700651|emb|CAL87914.1| GTPase [Helicobacter pylori] gi|122700693|emb|CAL87935.1| GTPase [Helicobacter pylori] gi|122701359|emb|CAL88069.1| GTPase [Helicobacter pylori] gi|122701367|emb|CAL88073.1| GTPase [Helicobacter pylori] gi|122701385|emb|CAL88082.1| GTPase [Helicobacter pylori] gi|122701489|emb|CAL88134.1| GTPase [Helicobacter pylori] gi|122701501|emb|CAL88140.1| GTPase [Helicobacter pylori] gi|122701513|emb|CAL88146.1| GTPase [Helicobacter pylori] gi|122701521|emb|CAL88150.1| GTPase [Helicobacter pylori] gi|122701529|emb|CAL88154.1| GTPase [Helicobacter pylori] gi|122701553|emb|CAL88166.1| GTPase [Helicobacter pylori] gi|122701569|emb|CAL88174.1| GTPase [Helicobacter pylori] gi|122701571|emb|CAL88175.1| GTPase [Helicobacter pylori] gi|122702219|emb|CAL88300.1| GTPase [Helicobacter pylori] gi|122702607|emb|CAL88493.1| GTPase [Helicobacter pylori] gi|122702631|emb|CAL88505.1| GTPase [Helicobacter pylori] gi|122702777|emb|CAL88578.1| GTPase [Helicobacter pylori] gi|242255852|gb|ACS88910.1| GTPase [Helicobacter pylori] gi|242255872|gb|ACS88920.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|292806684|gb|ADE42472.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 85/162 (52%), Gaps = 6/162 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREIFKINHNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 K+D + Y S + IS H+ G S L + + Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLR 164 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ +F H L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREIFKINHNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122702759|emb|CAL88569.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/159 (33%), Positives = 83/159 (52%), Gaps = 6/159 (3%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGMA-- 66 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSNKM 121 K+ ++K++ A + LIL+++D K+ P D + F + K N +V NK+ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVINKI 124 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 D + Y S + IS H+ G S L I Sbjct: 125 DNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD + +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D ++S L++N+ Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSALDLNQ 170 >gi|122700593|emb|CAL87885.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISTL 158 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|93004286|gb|ABE97063.1| YphC [Helicobacter pylori] Length = 170 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 85/162 (52%), Gaps = 6/162 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 K+D + Y S + IS H+ G S L + + Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLR 164 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122701417|emb|CAL88098.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 85/172 (49%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D ++S L++N+ Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSTLDLNQ 170 >gi|122700901|emb|CAL88039.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 52/162 (32%), Positives = 85/162 (52%), Gaps = 6/162 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 K+D + Y S + IS H+ G S L + + Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISTLIDAVLR 164 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122700711|emb|CAL87944.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|317452851|emb|CBL87861.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/164 (32%), Positives = 85/164 (51%), Gaps = 6/164 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 K+D + Y S + IS H+ G S L I + Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAILNVL 166 Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 84/172 (48%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D +++VL +N+ Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILNVLNLNQ 170 >gi|292806592|gb|ADE42426.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/164 (32%), Positives = 85/164 (51%), Gaps = 6/164 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 K+D + Y S + IS H+ G S L I + Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAILNVL 166 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 84/172 (48%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D +++VL +N+ Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILNVLNLNQ 170 >gi|122701527|emb|CAL88153.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 84/172 (48%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D ++S L +N+ Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSTLNLNQ 170 >gi|122700679|emb|CAL87928.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERSYAFSSFGMPKSFNISVSHNRGISTLIDAIL 163 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122700669|emb|CAL87923.1| GTPase [Helicobacter pylori] gi|122700699|emb|CAL87938.1| GTPase [Helicobacter pylori] gi|122701361|emb|CAL88070.1| GTPase [Helicobacter pylori] gi|122701505|emb|CAL88142.1| GTPase [Helicobacter pylori] gi|122701511|emb|CAL88145.1| GTPase [Helicobacter pylori] gi|122701515|emb|CAL88147.1| GTPase [Helicobacter pylori] gi|122701559|emb|CAL88169.1| GTPase [Helicobacter pylori] gi|122702591|emb|CAL88485.1| GTPase [Helicobacter pylori] gi|122702615|emb|CAL88497.1| GTPase [Helicobacter pylori] gi|122702665|emb|CAL88522.1| GTPase [Helicobacter pylori] gi|122702867|emb|CAL88623.1| GTPase [Helicobacter pylori] gi|122702875|emb|CAL88627.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 84/172 (48%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D ++S L +N+ Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSALNLNQ 170 >gi|260890872|ref|ZP_05902135.1| tRNA modification GTPase TrmE [Leptotrichia hofstadii F0254] gi|260859425|gb|EEX73925.1| tRNA modification GTPase TrmE [Leptotrichia hofstadii F0254] Length = 162 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 42/118 (35%), Positives = 69/118 (58%), Gaps = 3/118 (2%) Query: 209 VGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRIT 268 +G+PNVGKSTL+N LL R + +G TRD + N K P+ + DTAG+RK I Sbjct: 1 MGKPNVGKSTLLNALLHEERAIVTHIAGTTRDVIEEIINIKGIPLVLVDTAGIRKTDDIV 60 Query: 269 ESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 E++ V+KS Q + + +++LDA+ E +D+ +++ + V++ LNK D+ Sbjct: 61 ENI---GVEKSKQFIEKADLVLLVLDASKELENEDIEVINQIKENKKKVIVLLNKIDL 115 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 37/116 (31%), Positives = 67/116 (57%), Gaps = 3/116 (2%) Query: 8 VGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNCS 67 +G PNVGKSTL N L+ ++ A+V + G TRD + I G+ +VDTAGI K Sbjct: 1 MGKPNVGKSTLLNALLHEERAIVTHIAGTTRDVIEEIINIKGIPLVLVDTAGIR--KTDD 58 Query: 68 IAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 I + + ++++ I +A L+L ++D+ + D + + +++ +I++ NK+D Sbjct: 59 IVENIGVEKSKQFIEKADLVLLVLDASKELENEDIEVINQIKENKKKVIVLLNKID 114 >gi|122702447|emb|CAL88414.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/159 (33%), Positives = 83/159 (52%), Gaps = 6/159 (3%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGMA-- 66 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSNKM 121 K+ ++K++ A + LIL+++D K+ P D + F + K N +V NK+ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVINKI 124 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 D + Y S + IS H+ G S L I Sbjct: 125 DNDKEKERSYAFSSFGMPKSFNISVSHNRGISALVDAIL 163 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD + +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122701689|emb|CAL88234.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISALIDAIL 163 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|93004276|gb|ABE97058.1| YphC [Helicobacter pylori] gi|122700717|emb|CAL87947.1| GTPase [Helicobacter pylori] gi|122701717|emb|CAL88248.1| GTPase [Helicobacter pylori] gi|122702179|emb|CAL88280.1| GTPase [Helicobacter pylori] gi|195954219|gb|ACG58815.1| YphC [Helicobacter pylori] Length = 170 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 85/172 (49%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D ++S L++N+ Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSALDLNQ 170 >gi|4467655|emb|CAB37779.1| GTP-binding protein homologue [Helicobacter pylori] gi|122701539|emb|CAL88159.1| GTPase [Helicobacter pylori] gi|242255860|gb|ACS88914.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERSYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 85/172 (49%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R+ A + I+ R L D ++S L +N+ Sbjct: 125 D--NDK----EKERSYAFSSFGMPKSFNISVSHNRGISALIDAILSALNLNQ 170 >gi|122702879|emb|CAL88629.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/164 (32%), Positives = 85/164 (51%), Gaps = 6/164 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDTLLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINSNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 K+D + Y S + IS H+ G S L I + Sbjct: 123 KIDNDKEKERSYAFSSFGMPKSFNISVSHNRGISALIDAILNVL 166 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 49/171 (28%), Positives = 84/171 (49%), Gaps = 12/171 (7%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDT 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINSNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEIN 375 D +DK + R+ A + I+ R L D +++VL +N Sbjct: 125 D--NDK----EKERSYAFSSFGMPKSFNISVSHNRGISALIDAILNVLNLN 169 >gi|99905863|gb|ABF68626.1| YphC [Helicobacter pylori] gi|122702231|emb|CAL88306.1| GTPase [Helicobacter pylori] gi|242255926|gb|ACS88947.1| GTPase [Helicobacter pylori] gi|292806516|gb|ADE42388.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/164 (32%), Positives = 85/164 (51%), Gaps = 6/164 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 K+D + Y S + IS H+ G S L I + Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSVL 166 Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 85/172 (49%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D ++SVL++N+ Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSVLDLNQ 170 >gi|122702663|emb|CAL88521.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + +S H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNVSVSHNRGISTL 158 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122702737|emb|CAL88558.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 85/162 (52%), Gaps = 6/162 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVVN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 K+D + Y S + IS H+ G S L + + Sbjct: 123 KIDNDKEKERAYAFSSFGMPKNFNISVSHNRGISALIDAVLR 164 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVVNKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + + I+ R L D ++ L++NK Sbjct: 125 D--NDK----EKERAYAFSSFGMPKNFNISVSHNRGISALIDAVLRALDLNK 170 >gi|122702677|emb|CAL88528.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 83/161 (51%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 G ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 KG--ALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/171 (28%), Positives = 82/171 (47%), Gaps = 12/171 (7%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKGA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEIN 375 D +DK + R A + I+ R L D ++S L +N Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSALNLN 169 >gi|122701543|emb|CAL88161.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 83/172 (48%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D ++S L +N+ Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSTLNLNQ 170 >gi|292806634|gb|ADE42447.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISAL 158 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|292806438|gb|ADE42349.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREIFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISAL 158 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ +F L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREIFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122702323|emb|CAL88352.1| GTPase [Helicobacter pylori] gi|122702361|emb|CAL88371.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGVPKSFNISVSHNRGISAL 158 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122700861|emb|CAL88019.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/154 (34%), Positives = 82/154 (53%), Gaps = 6/154 (3%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGMA-- 66 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSNKM 121 K+ ++K++ A + LIL+++D K+ P D I F + K N +V NK+ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVINKI 124 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 D + Y S + IS H+ G S L Sbjct: 125 DNDKEKERAYAFSSFGIPKSFNISVSHNRGISAL 158 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD + +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|222529401|ref|YP_002573283.1| GTP-binding protein Era [Caldicellulosiruptor bescii DSM 6725] gi|312622365|ref|YP_004023978.1| GTP-binding protein era [Caldicellulosiruptor kronotskyensis 2002] gi|254783286|sp|B9MS56|ERA_ANATD RecName: Full=GTPase Era gi|222456248|gb|ACM60510.1| GTP-binding protein Era [Caldicellulosiruptor bescii DSM 6725] gi|312202832|gb|ADQ46159.1| GTP-binding protein Era [Caldicellulosiruptor kronotskyensis 2002] Length = 300 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 52/149 (34%), Positives = 83/149 (55%), Gaps = 10/149 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A++G PNVGKSTL N LV KK++++ P TR+ + G + +DT G+ K Sbjct: 8 VALIGRPNVGKSTLMNYLVGKKISIISPKPQTTRNSIKGILTLEDAQIIFIDTPGVHPPK 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDS-KAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 N + + M +E + E LIL+++++ GI P+D AI L++ P I+V NK D Sbjct: 68 N-KLGEYMVKVSEKTLKEVDLILYIVEAIDNGIGPWDEAIIERLKEVETPKILVLNKSD- 125 Query: 124 RIAQRNFYEIY------SLDFKEIVEISA 146 +A + EI L+F+ IV+I+A Sbjct: 126 -LASKENIEILKSIFSTKLNFESIVDIAA 153 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 36/124 (29%), Positives = 60/124 (48%), Gaps = 4/124 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKSTL+N L+G + + TR+S+ ++ I DT G+ P Sbjct: 8 VALIGRPNVGKSTLMNYLVGKKISIISPKPQTTRNSIKGILTLEDAQIIFIDTPGVHPPK 67 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATI-PFEKQDLRIVDSVFNTGHAVVLALNKW 324 K +K+++ V + +D I P+ D I++ + +L LNK Sbjct: 68 NKLGEYMVKVSEKTLKEVDLILYIVEAIDNGIGPW---DEAIIERLKEVETPKILVLNKS 124 Query: 325 DMVS 328 D+ S Sbjct: 125 DLAS 128 >gi|229542320|ref|ZP_04431380.1| tRNA modification GTPase TrmE [Bacillus coagulans 36D1] gi|229326740|gb|EEN92415.1| tRNA modification GTPase TrmE [Bacillus coagulans 36D1] Length = 461 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 50/170 (29%), Positives = 93/170 (54%), Gaps = 14/170 (8%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L A++GRPNVGKS+L+N L+ N+ + G TRD + N + P+ + D Sbjct: 218 KILREGLSTAIIGRPNVGKSSLLNSLVQENKAIVTDIPGTTRDVIEEYVNVRGVPLRLID 277 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ I E + V++S ++++ + +++++++ P +D + ++V G V Sbjct: 278 TAGIRETEDIVERI---GVERSRKALKEADLILLVINSSEPLSPEDEALFEAV--EGMDV 332 Query: 318 VLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDL 367 ++ LNKWD L + ++++ L Q I T S T EG++ L Sbjct: 333 IVILNKWD-------LPHQVEMESVRELAQGAKIL--TTSLVTEEGMEKL 373 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 43/117 (36%), Positives = 72/117 (61%), Gaps = 3/117 (2%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N LV++ A+V + PG TRD + + GV ++DTAGI + ++ Sbjct: 227 AIIGRPNVGKSSLLNSLVQENKAIVTDIPGTTRDVIEEYVNVRGVPLRLIDTAGIRETED 286 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + + +++ A+ EA LIL +I+S ++P D A+ F + + +I++ NK D Sbjct: 287 I-VERIGVERSRKALKEADLILLVINSSEPLSPEDEAL--FEAVEGMDVIVILNKWD 340 >gi|122701479|emb|CAL88129.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 85/162 (52%), Gaps = 6/162 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 K+D + Y S + IS H+ G S L I + Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAILR 164 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122700883|emb|CAL88030.1| GTPase [Helicobacter pylori] Length = 170 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISAL 158 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122702167|emb|CAL88274.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERTYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + RT A + I+ R L D +++ L +N+ Sbjct: 125 D--NDK----EKERTYAFSSFGMPKSFNISVSHNRGISALIDAILNTLNLNQ 170 >gi|122700691|emb|CAL87934.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPNDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERSYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 50/171 (29%), Positives = 83/171 (48%), Gaps = 12/171 (7%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIP-NDEDLKLFREVFKTNPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEIN 375 D +DK + R+ A + I+ R L D ++S L +N Sbjct: 125 D--NDK----EKERSYAFSSFGMPKSFNISVSHNRGISALIDAILSALNLN 169 >gi|99905879|gb|ABF68634.1| YphC [Helicobacter pylori] gi|122702729|emb|CAL88554.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREIFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ +F L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREIFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|317453527|emb|CBL87873.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKQKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREIFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISAL 158 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKQKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ +F L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREIFKINPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D ++S L +N+ Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLSALNLNQ 170 >gi|122700697|emb|CAL87937.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNSNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKDRAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNSNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122700683|emb|CAL87930.1| GTPase [Helicobacter pylori] gi|122702235|emb|CAL88308.1| GTPase [Helicobacter pylori] gi|122702661|emb|CAL88520.1| GTPase [Helicobacter pylori] gi|242255832|gb|ACS88900.1| GTPase [Helicobacter pylori] gi|242255862|gb|ACS88915.1| GTPase [Helicobacter pylori] gi|242255864|gb|ACS88916.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISTLIDAIL 163 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122702849|emb|CAL88614.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDTLLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 50/171 (29%), Positives = 84/171 (49%), Gaps = 12/171 (7%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDT 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEIN 375 D +DK + R A + I+ R L D ++S L++N Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSALDLN 169 >gi|122701435|emb|CAL88107.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISTLIDAIL 163 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122701455|emb|CAL88117.1| GTPase [Helicobacter pylori] gi|122702121|emb|CAL88251.1| GTPase [Helicobacter pylori] gi|292806598|gb|ADE42429.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISAL 158 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122701593|emb|CAL88186.1| GTPase [Helicobacter pylori] gi|122702727|emb|CAL88553.1| GTPase [Helicobacter pylori] gi|242255950|gb|ACS88959.1| GTPase [Helicobacter pylori] gi|292806416|gb|ADE42338.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 85/162 (52%), Gaps = 6/162 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 K+D + Y S + IS H+ G S L I + Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAILR 164 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|221124472|ref|XP_002165796.1| PREDICTED: similar to predicted protein [Hydra magnipapillata] Length = 539 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 47/153 (30%), Positives = 71/153 (46%), Gaps = 24/153 (15%) Query: 95 GITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSE 154 G++ DH I ++LRK P ++V+NK + A E + L E+ +SA H G Sbjct: 24 GLSAQDHDIGNYLRKLGKPCLVVANKAEGMKAGSQLAEFFELGLGEVFPVSAAHGQGMRS 83 Query: 155 LHSVIFKIFKQKYPNHPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNV 214 L + + P E+ P+ + S +++AV GRPNV Sbjct: 84 LIEMALDALHLEEP-------------EDDPEPSDPS-----------VIKLAVAGRPNV 119 Query: 215 GKSTLINRLLGYNRLLTGSQSGITRDSVSISWN 247 GKSTLIN LG RL+ G TRD++S+ + Sbjct: 120 GKSTLINTWLGEERLVAFDMPGTTRDAISVPFE 152 Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust. Identities = 17/38 (44%), Positives = 24/38 (63%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRD 39 + +A+ G PNVGKSTL N + ++ V + PG TRD Sbjct: 108 VIKLAVAGRPNVGKSTLINTWLGEERLVAFDMPGTTRD 145 >gi|122701375|emb|CAL88077.1| GTPase [Helicobacter pylori] gi|122701413|emb|CAL88096.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL K+++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISTLIDAIL 163 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122702623|emb|CAL88501.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISALIDAIL 163 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122701635|emb|CAL88207.1| GTPase [Helicobacter pylori] gi|122701665|emb|CAL88222.1| GTPase [Helicobacter pylori] gi|122701667|emb|CAL88223.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 52/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKITLNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + +S H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNVSVSHNRGISALIDAIL 163 Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKITLNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|4467667|emb|CAB37785.1| GTP-binding protein homologue [Helicobacter pylori] Length = 170 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 84/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKSLNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGAPKSLNISVSHNRGISAL 158 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKSLNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|164686279|ref|ZP_02210309.1| hypothetical protein CLOBAR_02717 [Clostridium bartlettii DSM 16795] gi|164601881|gb|EDQ95346.1| hypothetical protein CLOBAR_02717 [Clostridium bartlettii DSM 16795] Length = 296 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 62/178 (34%), Positives = 89/178 (50%), Gaps = 11/178 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIV--DTAGIAD 62 ++IVG PNVGKSTL N +V +K+A++ + P TR+ + QA+ IV DT GI Sbjct: 7 VSIVGRPNVGKSTLMNNVVGEKIAIMSDKPQTTRNTI--QAVYTDEECQIVFLDTPGIHK 64 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 KN + + M A L+LF++D I P D I LR P+I+V NK+D Sbjct: 65 PKN-KLGEFMVKSATDAFKNVDLVLFVVDDSKKIGPGDRKIIEDLRGIKTPVILVLNKID 123 Query: 123 TRIAQRNFYEIYSLD-----FKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 ++ + +E+ L FK IV ISA +EL VI ++ P MI Sbjct: 124 -KLEESELFELMQLYSNEDLFKAIVPISALKGRNVNELLKVIGNYLQEGPKYFPDYMI 180 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 36/132 (27%), Positives = 67/132 (50%), Gaps = 5/132 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +++VGRPNVGKSTL+N ++G + + TR+++ + + I DT G+ KP Sbjct: 7 VSIVGRPNVGKSTLMNNVVGEKIAIMSDKPQTTRNTIQAVYTDEECQIVFLDTPGIHKPK 66 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + VK + + + + + ++D + D +I++ + V+L LNK D Sbjct: 67 N---KLGEFMVKSATDAFKNVDLVLFVVDDSKKIGPGDRKIIEDLRGIKTPVILVLNKID 123 Query: 326 MV--SDKLNLLQ 335 + S+ L+Q Sbjct: 124 KLEESELFELMQ 135 >gi|122700609|emb|CAL87893.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 85/162 (52%), Gaps = 6/162 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINSNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 K+D + Y S + IS H+ G S L I + Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISALIDAILR 164 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINSNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|292806496|gb|ADE42378.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 52/162 (32%), Positives = 86/162 (53%), Gaps = 6/162 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A ++LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSNLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 K+D + Y S + IS H+ G S L + + Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLR 164 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 63/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----NLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122701397|emb|CAL88088.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPGDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPGD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122700619|emb|CAL87898.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 85/162 (52%), Gaps = 6/162 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREIFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 K+D + Y S + IS H+ G S L I + Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISALIDAILR 164 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ +F L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREIFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|239814410|ref|YP_002943320.1| GTP-binding protein Era [Variovorax paradoxus S110] gi|239800987|gb|ACS18054.1| GTP-binding protein Era [Variovorax paradoxus S110] Length = 321 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 43/118 (36%), Positives = 65/118 (55%), Gaps = 2/118 (1%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N LV +K+++ TR R+ G + F VDT G Sbjct: 29 IAIVGKPNVGKSTLLNALVGQKISITSRKAQTTRHRITGMRTLGATQFVFVDTPGFQTLH 88 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 ++ K +N + A+ + LILF++++ TP D + L K IP ++++NK+D Sbjct: 89 ANALNKSLNKTVQGAVGDVDLILFVVEA-GSFTPADERVLKLL-GKGIPTVLLANKLD 144 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 38/139 (27%), Positives = 64/139 (46%), Gaps = 4/139 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA+VG+PNVGKSTL+N L+G +T ++ TR ++ DT G + Sbjct: 29 IAIVGKPNVGKSTLLNALVGQKISITSRKAQTTRHRITGMRTLGATQFVFVDTPGFQT-- 86 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + + K++ K++Q I+ + F D R++ + G VL NK D Sbjct: 87 -LHANALNKSLNKTVQGAVGDVDLILFVVEAGSFTPADERVL-KLLGKGIPTVLLANKLD 144 Query: 326 MVSDKLNLLQDLRTKAIKN 344 V + ++ L+T K+ Sbjct: 145 NVHRRGDIAPWLQTMQAKH 163 >gi|122701621|emb|CAL88200.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGVA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERSYAFSSFGMPKSFNISVSHNRGISAL 158 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT G+ K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGVAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122700715|emb|CAL87946.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122700663|emb|CAL87920.1| GTPase [Helicobacter pylori] gi|122701585|emb|CAL88182.1| GTPase [Helicobacter pylori] gi|122701587|emb|CAL88183.1| GTPase [Helicobacter pylori] gi|292806594|gb|ADE42427.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806596|gb|ADE42428.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 83/172 (48%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D ++S L +N+ Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSALNLNQ 170 >gi|292806644|gb|ADE42452.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 85/162 (52%), Gaps = 6/162 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 K+D + Y S + IS H+ G S L + + Sbjct: 123 KIDNDKKKERAYAFSSFGIPKSFNISVSHNRGISALIDAVLR 164 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122701469|emb|CAL88124.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 85/162 (52%), Gaps = 6/162 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 K+D + Y S + IS H+ G S L I + Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAILR 164 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 83/172 (48%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D ++ L++NK Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILRALDLNK 170 >gi|17826782|emb|CAD18957.1| GTP-binding protein [Helicobacter pylori] Length = 170 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 85/162 (52%), Gaps = 6/162 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 K+D + Y S + IS H+ G S L I + Sbjct: 123 KIDNDKEKERSYAFSSFGMPKSFNISVSHNRGISALIDAILR 164 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|255283806|ref|ZP_05348361.1| tRNA modification GTPase TrmE [Bryantella formatexigens DSM 14469] gi|255265689|gb|EET58894.1| tRNA modification GTPase TrmE [Bryantella formatexigens DSM 14469] Length = 459 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 55/160 (34%), Positives = 90/160 (56%), Gaps = 10/160 (6%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PN GKS+L N L+ ++ A+V G TRD L + I+GV I+DTAGI D ++ Sbjct: 227 IVGKPNAGKSSLLNVLLGEERAIVTEIAGTTRDTLEEEIQIHGVSLQIIDTAGIRDTQDT 286 Query: 67 SIAKQMNDQTELAINE-AHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 +++ + LA E A LIL++ D+ G+ D I +R+K +I++ NKMD + Sbjct: 287 --VEKIGVEKALAYAEDADLILYVADAATGLDENDIRIMDKIREKK--VIVLLNKMDLEV 342 Query: 126 --AQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 ++ EI + K ++ +SA+ + G L + I ++F Sbjct: 343 VTSEEQIREILN---KPVIPVSAKEESGIDILENTIKEMF 379 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 40/129 (31%), Positives = 71/129 (55%), Gaps = 5/129 (3%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K I + +R +VG+PN GKS+L+N LLG R + +G TRD++ ++I D Sbjct: 217 KRIREGIRTVIVGKPNAGKSSLLNVLLGEERAIVTEIAGTTRDTLEEEIQIHGVSLQIID 276 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R +++E+ V+K++ + + + DA ++ D+RI+D + V Sbjct: 277 TAGIRDTQ---DTVEKIGVEKALAYAEDADLILYVADAATGLDENDIRIMDKIRE--KKV 331 Query: 318 VLALNKWDM 326 ++ LNK D+ Sbjct: 332 IVLLNKMDL 340 >gi|122701687|emb|CAL88233.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISAL 158 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122702151|emb|CAL88266.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 83/172 (48%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D ++S L +N+ Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSALNLNQ 170 >gi|122700841|emb|CAL88009.1| GTPase [Helicobacter pylori] gi|122701461|emb|CAL88120.1| GTPase [Helicobacter pylori] gi|122702239|emb|CAL88310.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|256848511|ref|ZP_05553953.1| tRNA modification GTPase TrmE [Lactobacillus coleohominis 101-4-CHN] gi|256714778|gb|EEU29757.1| tRNA modification GTPase TrmE [Lactobacillus coleohominis 101-4-CHN] Length = 462 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 54/178 (30%), Positives = 96/178 (53%), Gaps = 22/178 (12%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + L A++GRPNVGKS+L+N LL ++ + + +G TRD + N + P+++ D Sbjct: 218 KVLRDGLATAIIGRPNVGKSSLLNSLLHEDKAIVTNVAGTTRDVIEEYVNVNDVPLKLID 277 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R +++E+ V++S Q++ T + ++L+D++ P K+D +++ N + Sbjct: 278 TAGIRHTD---DTVEKIGVERSRQAIDTADLILLLIDSSQPLTKEDQQLIAQTANKPRII 334 Query: 318 VLALNKWDMVS----DKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSV 371 + NK D+ + DKL L D GD I T S EG+D+L ++ Sbjct: 335 I--FNKSDLPTKVDQDKLQALVD------------GDKVI-TASMTKHEGIDELSAAI 377 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 60/178 (33%), Positives = 92/178 (51%), Gaps = 14/178 (7%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+ + A+V N G TRD + +N V ++DTAGI + Sbjct: 227 AIIGRPNVGKSSLLNSLLHEDKAIVTNVAGTTRDVIEEYVNVNDVPLKLIDTAGIRHTDD 286 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD--T 123 ++ K +++ AI+ A LIL LIDS +T D + + + N P II+ NK D T Sbjct: 287 -TVEKIGVERSRQAIDTADLILLLIDSSQPLTKEDQQLIA--QTANKPRIIIFNKSDLPT 343 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 ++ Q + +D +++ S G EL + I +F E IE+N+ N Sbjct: 344 KVDQDKLQAL--VDGDKVITASMTKHEGIDELSAAISHLFFN-------EGIESNQNN 392 >gi|122702645|emb|CAL88512.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+ Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMV 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++DSK+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDSKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 50/171 (29%), Positives = 84/171 (49%), Gaps = 12/171 (7%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMVKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D+ +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDSKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEIN 375 D +DK + R A + I+ R L D ++S L +N Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSALNLN 169 >gi|122701327|emb|CAL88053.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREIFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISAL 158 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ +F L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREIFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122701451|emb|CAL88115.1| GTPase [Helicobacter pylori] gi|242255898|gb|ACS88933.1| GTPase [Helicobacter pylori] gi|242255932|gb|ACS88950.1| GTPase [Helicobacter pylori] gi|292806698|gb|ADE42479.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 85/162 (52%), Gaps = 6/162 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 K+D + Y S + IS H+ G S L I + Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAILR 164 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122702297|emb|CAL88339.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERSYAFSSFGVPKSFNISVSHNRGISAL 158 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|18075601|emb|CAD11196.1| GTP-binding protein [Helicobacter pylori] gi|122700745|emb|CAL87961.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|229828496|ref|ZP_04454565.1| hypothetical protein GCWU000342_00558 [Shuttleworthia satelles DSM 14600] gi|229793090|gb|EEP29204.1| hypothetical protein GCWU000342_00558 [Shuttleworthia satelles DSM 14600] Length = 310 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 59/195 (30%), Positives = 96/195 (49%), Gaps = 16/195 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRL---YGQAIINGVIFNIVDTAGIA 61 +A++G PNVGKSTL N+L+ +K+A+ N P TR+R+ Y ++F +DT GI Sbjct: 17 VAMIGRPNVGKSTLMNQLIGQKIAITSNKPQTTRNRIQTVYTDPDRGQIVF--LDTPGIH 74 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 KN + + M E ++ + LIL+LI+ + D I L + IP+ +V NK+ Sbjct: 75 QAKN-KLGQYMVGVAERSMKDVDLILWLIEPDTRVGGGDRHILKELEQIQIPVFLVINKI 133 Query: 122 DTRIAQRNFYEIYS----LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 D ++ I + DF EI+ + A G +L IF + P P+ E+ Sbjct: 134 DMVKKEKILAVIDTYRGEYDFDEILPVCARSGDGCKDLIESIF----SRLPQGPMFYDED 189 Query: 178 NKRNEESPKENITSE 192 ++ P I +E Sbjct: 190 TVTDQ--PMRQIAAE 202 Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 49/185 (26%), Positives = 90/185 (48%), Gaps = 14/185 (7%) Query: 192 EGKSSVKN-ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKN 250 E + S+KN ++K +A++GRPNVGKSTL+N+L+G +T ++ TR+ + + + Sbjct: 2 EKRDSMKNPVTKSGFVAMIGRPNVGKSTLMNQLIGQKIAITSNKPQTTRNRIQTVYTDPD 61 Query: 251 HPIEIF-DTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDS 309 +F DT G+ + L Q V + +S++ + + L++ D I+ Sbjct: 62 RGQIVFLDTPGIHQAK---NKLGQYMVGVAERSMKDVDLILWLIEPDTRVGGGDRHILKE 118 Query: 310 VFNTGHAVVLALNKWDMVSDK--LNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDL 367 + V L +NK DMV + L ++ R + + I + R+G+G DL Sbjct: 119 LEQIQIPVFLVINKIDMVKKEKILAVIDTYRGEYDFD-------EILPVCARSGDGCKDL 171 Query: 368 MVSVL 372 + S+ Sbjct: 172 IESIF 176 >gi|122701493|emb|CAL88136.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPNDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 83/172 (48%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIP-NDEDLKLFREVFKTNPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D ++S L +N+ Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSALNLNQ 170 >gi|122702277|emb|CAL88329.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 54/159 (33%), Positives = 83/159 (52%), Gaps = 6/159 (3%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGMA-- 66 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSNKM 121 K+ ++K++ A + LIL+++D K+ P D I F + K N +V NK+ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYIVDGKS--IPSDEDIKLFREVFKINPNCFLVINKI 124 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 D + Y S + IS H+ G S L I Sbjct: 125 DNDKEKERAYAFSSFGMPKSFNISVSHNRGISVLIDAIL 163 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD + +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYIVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|16330488|ref|NP_441216.1| tRNA modification GTPase TrmE [Synechocystis sp. PCC 6803] gi|2495120|sp|P73839|MNME_SYNY3 RecName: Full=tRNA modification GTPase mnmE gi|1652979|dbj|BAA17896.1| thiophen and furan oxidation protein [Synechocystis sp. PCC 6803] Length = 456 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 51/161 (31%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKS+L N + A+V + PG TRD + Q ++ G+ ++DTAGI + Sbjct: 224 VAIVGQPNVGKSSLLNAWSRTDRAIVTDLPGTTRDVVESQLVVEGIPIQVLDTAGIRETA 283 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + + +++ A +A L+L +D+ G T D I + + K+ P+I+V NK+D Sbjct: 284 D-QVEQIGVERSRKAAQQADLVLLTVDAHQGWTEADQLI--YEQVKDRPLILVINKIDLG 340 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQ 165 R Y + V +A +LG L + I + Q Sbjct: 341 ---RADLVSYPPEITNTVLTAAAANLGIEALENAIIEQVNQ 378 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 71/123 (57%), Gaps = 5/123 (4%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 L++A+VG+PNVGKS+L+N +R + G TRD V + PI++ DTAG+R+ Sbjct: 222 LKVAIVGQPNVGKSSLLNAWSRTDRAIVTDLPGTTRDVVESQLVVEGIPIQVLDTAGIRE 281 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 + + +EQ V++S ++ + + ++ +DA + + D I + V + ++L +NK Sbjct: 282 TA---DQVEQIGVERSRKAAQQADLVLLTVDAHQGWTEADQLIYEQVKD--RPLILVINK 336 Query: 324 WDM 326 D+ Sbjct: 337 IDL 339 >gi|312128799|ref|YP_003993673.1| tRNA modification gtpase trme [Caldicellulosiruptor hydrothermalis 108] gi|311778818|gb|ADQ08304.1| tRNA modification GTPase TrmE [Caldicellulosiruptor hydrothermalis 108] Length = 455 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 58/151 (38%), Positives = 89/151 (58%), Gaps = 12/151 (7%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 IYT+ IVG PNVGKS+L NRL+K++ A+V + PG TRD + I G+ + DTAG+ Sbjct: 221 IYTV-IVGRPNVGKSSLLNRLLKEEKAIVTDIPGTTRDVIEEVLDIEGLPIILADTAGVR 279 Query: 62 DGKNCSIAKQMNDQTEL-AINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 K I +++ + L +I A L+LF+I+S +GI D I ++ K I++ NK Sbjct: 280 --KTEDIVEKIGVKKTLESIERADLVLFMIES-SGILQEDLEIFETIKDKR--FIVLVNK 334 Query: 121 MD--TRIAQRNFYEIYSLDFKEIVEISAEHD 149 +D +++Q + I+ KE + IS EHD Sbjct: 335 IDKEVKVSQDDIKRIFG---KEGIFISVEHD 362 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 41/128 (32%), Positives = 72/128 (56%), Gaps = 6/128 (4%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K I + +VGRPNVGKS+L+NRLL + + G TRD + + + PI + D Sbjct: 215 KAIKSGIYTVIVGRPNVGKSSLLNRLLKEEKAIVTDIPGTTRDVIEEVLDIEGLPIILAD 274 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+RK I E + VKK+++S+ + + +++++ ++DL I +++ + V Sbjct: 275 TAGVRKTEDIVEKI---GVKKTLESIERADLVLFMIESS-GILQEDLEIFETIKDKRFIV 330 Query: 318 VLALNKWD 325 + +NK D Sbjct: 331 L--VNKID 336 >gi|122702859|emb|CAL88619.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKVNSNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKVNSNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|323705843|ref|ZP_08117415.1| tRNA modification GTPase TrmE [Thermoanaerobacterium xylanolyticum LX-11] gi|323534839|gb|EGB24618.1| tRNA modification GTPase TrmE [Thermoanaerobacterium xylanolyticum LX-11] Length = 458 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 56/181 (30%), Positives = 96/181 (53%), Gaps = 10/181 (5%) Query: 153 SELHSVIFKIFK-QKYPNHPLEMIENNKRNEESPKE--NITSEGKSSVKN--ISKPLRIA 207 ++L ++I IF +P +E+ +++ + K +I K+S K I + L A Sbjct: 167 NDLVALIAHIFALMDFPEEDVELFNDDELIDGINKSISDIDEILKTSEKGRIIREGLNTA 226 Query: 208 VVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRI 267 ++G+PNVGKS+L+N LL NR + G TRD + + K PI + DTAG+R+ I Sbjct: 227 IIGKPNVGKSSLLNALLNENRAIVTDIPGTTRDIIEEHLSIKGIPINLIDTAGIRQTDEI 286 Query: 268 TESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMV 327 E + V++S +++ + + + D++ P EK D I+ + N V+ LNK D+ Sbjct: 287 VERI---GVERSREAIDKADLIMFIFDSSRPLEKDDYDILKLIEN--KKVLYILNKIDLP 341 Query: 328 S 328 S Sbjct: 342 S 342 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 59/190 (31%), Positives = 102/190 (53%), Gaps = 10/190 (5%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+ + A+V + PG TRD + I G+ N++DTAGI + Sbjct: 226 AIIGKPNVGKSSLLNALLNENRAIVTDIPGTTRDIIEEHLSIKGIPINLIDTAGIR--QT 283 Query: 66 CSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I +++ +++ AI++A LI+F+ DS + D+ I + K + I+ NK+D Sbjct: 284 DEIVERIGVERSREAIDKADLIMFIFDSSRPLEKDDYDILKLIENKKVLYIL--NKIDLP 341 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 A + E+ L + V++S+ G L + ++ I +H E + N R++++ Sbjct: 342 SAI-DIDEVDKLSGGKYVKLSSFTKEGLDILENTVYNIVMVDGLSHD-EFLLTNMRHKDA 399 Query: 185 ---PKENITS 191 KEN+ S Sbjct: 400 LIKAKENLLS 409 >gi|122702563|emb|CAL88471.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERSYAFSSFGMPKSFNISVSHNRGISAL 158 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|331092106|ref|ZP_08340937.1| tRNA modification GTPase TrmE [Lachnospiraceae bacterium 2_1_46FAA] gi|330402307|gb|EGG81878.1| tRNA modification GTPase TrmE [Lachnospiraceae bacterium 2_1_46FAA] Length = 463 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 85/157 (54%), Gaps = 4/157 (2%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PN GKS+L N LV ++ A+V + G TRD L + GV NI+DTAGI + K+ Sbjct: 231 IVGKPNAGKSSLLNVLVGEERAIVTDIEGTTRDVLEENIQLQGVSLNIMDTAGIRETKDV 290 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 + K D+ + NEA LI+++ D+ + D I +R K +++ + +D + Sbjct: 291 -VEKIGVDKAKNHANEADLIIYVADASRPLDDNDEEIIEMIRDKQAIVLLNKSDLDMVVT 349 Query: 127 QRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 ++ E + K ++ ISA+ + G EL + ++F Sbjct: 350 KKELQEKLN---KPMIVISAKEEQGIKELEETLKEMF 383 Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 54/207 (26%), Positives = 98/207 (47%), Gaps = 20/207 (9%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 I + ++ +VG+PN GKS+L+N L+G R + G TRD + + + + I DTA Sbjct: 223 IKEGIKTVIVGKPNAGKSSLLNVLVGEERAIVTDIEGTTRDVLEENIQLQGVSLNIMDTA 282 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R+ + E + V K+ + I + DA+ P + D I++ + + V+L Sbjct: 283 GIRETKDVVEKI---GVDKAKNHANEADLIIYVADASRPLDDNDEEIIEMIRDKQAIVLL 339 Query: 320 ALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWK 379 + DMV K L + L N P I IS + +G+ +L ++ E+ + Sbjct: 340 NKSDLDMVVTKKELQEKL------NKPMI------VISAKEEQGIKELEETLKEM--FFH 385 Query: 380 TRITTS---YLNSWLQKTQLQNPPPTI 403 I+ + Y+ + KT LQ+ ++ Sbjct: 386 GDISFNDEVYITNIRHKTALQDAAESL 412 >gi|292806560|gb|ADE42410.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 85/162 (52%), Gaps = 6/162 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 K+D + Y S + IS H+ G S L + + Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISALIDAVLR 164 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|242255816|gb|ACS88892.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 85/162 (52%), Gaps = 6/162 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 K+D + Y S + IS H+ G S L I + Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAILR 164 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122702617|emb|CAL88498.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNSNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKDRAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNSNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122701651|emb|CAL88215.1| GTPase [Helicobacter pylori] gi|122701653|emb|CAL88216.1| GTPase [Helicobacter pylori] gi|122701669|emb|CAL88224.1| GTPase [Helicobacter pylori] gi|122702187|emb|CAL88284.1| GTPase [Helicobacter pylori] gi|122702191|emb|CAL88286.1| GTPase [Helicobacter pylori] gi|122702197|emb|CAL88289.1| GTPase [Helicobacter pylori] gi|122702201|emb|CAL88291.1| GTPase [Helicobacter pylori] gi|122702685|emb|CAL88532.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 52/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + +S H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNVSVSHNRGISALIDAIL 163 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|292806476|gb|ADE42368.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 84/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + ++NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIVLNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYTFSSFGIPKSFNISVSHNRGISAL 158 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIVLNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122702839|emb|CAL88609.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL K+++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYIVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISAL 158 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYIVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122700707|emb|CAL87942.1| GTPase [Helicobacter pylori] gi|122700725|emb|CAL87951.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISAL 158 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122700701|emb|CAL87939.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYIVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYIVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|99905871|gb|ABF68630.1| YphC [Helicobacter pylori] Length = 170 Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREIFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFSISVSHNRGISAL 158 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ +F L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREIFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|292806478|gb|ADE42369.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806508|gb|ADE42384.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREIFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISALIDAIL 163 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ +F L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREIFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|4467651|emb|CAB37777.1| GTP-binding protein homologue [Helicobacter pylori] gi|122701565|emb|CAL88172.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|292806696|gb|ADE42478.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERSYAFSSFGMPKSFNISVSHNRGISAL 158 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R+ A + I+ R L D ++S L +N+ Sbjct: 125 D--NDK----EKERSYAFSSFGMPKSFNISVSHNRGISALIDAVLSTLNLNQ 170 >gi|1524359|emb|CAA66716.1| GTPase [Synechocystis sp. PCC 6803] Length = 456 Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 51/161 (31%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKS+L N + A+V + PG TRD + Q ++ G+ ++DTAGI + Sbjct: 224 VAIVGQPNVGKSSLLNAWSRTDRAIVTDLPGTTRDVVESQLVVEGIPIQVLDTAGIRETA 283 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + + +++ A +A L+L +D+ G T D I + + K+ P+I+V NK+D Sbjct: 284 D-QVEQIGVERSRKAAQQADLVLLTVDAHQGWTEADQLI--YEQVKDRPLILVINKIDLG 340 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQ 165 R Y + V +A +LG L + I + Q Sbjct: 341 ---RADLVSYPPEITNTVLTAAAANLGIEALENAIIEQVNQ 378 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 71/123 (57%), Gaps = 5/123 (4%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 L++A+VG+PNVGKS+L+N +R + G TRD V + PI++ DTAG+R+ Sbjct: 222 LKVAIVGQPNVGKSSLLNAWSRTDRAIVTDLPGTTRDVVESQLVVEGIPIQVLDTAGIRE 281 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 + + +EQ V++S ++ + + ++ +DA + + D I + V + ++L +NK Sbjct: 282 TA---DQVEQIGVERSRKAAQQADLVLLTVDAHQGWTEADQLIYEQVKD--RPLILVINK 336 Query: 324 WDM 326 D+ Sbjct: 337 IDL 339 >gi|331002901|ref|ZP_08326414.1| GTP-binding protein Era [Lachnospiraceae oral taxon 107 str. F0167] gi|330413194|gb|EGG92568.1| GTP-binding protein Era [Lachnospiraceae oral taxon 107 str. F0167] Length = 298 Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 54/168 (32%), Positives = 86/168 (51%), Gaps = 10/168 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIV--DTAGIAD 62 +A++G PNVGKSTL N L+ +K+A+ N P TR+R+ Q + IV DT GI Sbjct: 6 VALIGRPNVGKSTLMNTLIGQKIAITSNKPQTTRNRI--QTVFTDERGQIVFLDTPGIHK 63 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 KN + + M + + + ++L+LI+ I D I L +P+I+ NKMD Sbjct: 64 AKN-KLGEYMVKVSTRTLRDVDMVLWLIEPNTFIGEGDEHIFEILSNLEVPVILAINKMD 122 Query: 123 TRIAQRNFYEI---YS--LDFKEIVEISAEHDLGTSELHSVIFKIFKQ 165 + + + + YS + F E+V +SA T +L +IFK + Sbjct: 123 SLKQKEDMLAVIAKYSSKMKFAEVVPVSALKGTNTDKLLEIIFKYLSE 170 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 39/129 (30%), Positives = 68/129 (52%), Gaps = 3/129 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKSTL+N L+G +T ++ TR+ + + + I DT G+ K Sbjct: 6 VALIGRPNVGKSTLMNTLIGQKIAITSNKPQTTRNRIQTVFTDERGQIVFLDTPGIHKAK 65 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + VK S +++R + + L++ + D I + + N V+LA+NK D Sbjct: 66 N---KLGEYMVKVSTRTLRDVDMVLWLIEPNTFIGEGDEHIFEILSNLEVPVILAINKMD 122 Query: 326 MVSDKLNLL 334 + K ++L Sbjct: 123 SLKQKEDML 131 >gi|122701625|emb|CAL88202.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISALIDAIL 163 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122700767|emb|CAL87972.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREIFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISTL 158 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ +F L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREIFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|317452825|emb|CBL87848.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHELELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKATQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGAPKSFNISVSHNRGISAL 158 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 84/172 (48%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHELELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKATQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D ++S L +N+ Sbjct: 125 D--NDK----EKERAYAFSSFGAPKSFNISVSHNRGISALIDAVLSALNLNQ 170 >gi|122701657|emb|CAL88218.1| GTPase [Helicobacter pylori] gi|242255818|gb|ACS88893.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 52/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + +S H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNVSVSHNRGISALIDAIL 163 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122700847|emb|CAL88012.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRRIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRRIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|292806498|gb|ADE42379.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 83/172 (48%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D ++ L++NK Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILMALDLNK 170 >gi|122701393|emb|CAL88086.1| GTPase [Helicobacter pylori] gi|122702681|emb|CAL88530.1| GTPase [Helicobacter pylori] gi|242255958|gb|ACS88963.1| GTPase [Helicobacter pylori] gi|242255960|gb|ACS88964.1| GTPase [Helicobacter pylori] gi|292806426|gb|ADE42343.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREIFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISALIDAIL 163 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ +F L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREIFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|99905881|gb|ABF68635.1| YphC [Helicobacter pylori] Length = 170 Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 85/162 (52%), Gaps = 6/162 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 K+D + Y S + IS H+ G S L I + Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISALIDAILR 164 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|292806572|gb|ADE42416.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISALIDAIL 163 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122700591|emb|CAL87884.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL K+++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKEQAYAFSSFGMPKSFNISVSHNRGISAL 158 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122702311|emb|CAL88346.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYIVDGKS--IPSDEDIKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISAL 158 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYIVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122700863|emb|CAL88020.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDVNKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERSYAFSSFGIPKSFNISVSHNRGISTL 158 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDVNKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122700871|emb|CAL88024.1| GTPase [Helicobacter pylori] gi|122701701|emb|CAL88240.1| GTPase [Helicobacter pylori] gi|122701719|emb|CAL88249.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREIFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISAL 158 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ +F L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREIFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122702701|emb|CAL88540.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 85/162 (52%), Gaps = 6/162 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYIVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 K+D + Y S + IS H+ G S L I + Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISALIDAILR 164 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYIVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122701487|emb|CAL88133.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 53/158 (33%), Positives = 83/158 (52%), Gaps = 6/158 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A K Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA--K 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSNKMD 122 + ++K++ A + LIL+++D K+ P D + F + K N +V NK+D Sbjct: 68 DALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVINKID 125 Query: 123 TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 + Y S + ISA H+ G S L I Sbjct: 126 NDKEKERAYAFSSFGMPKSFNISASHNRGISALIDAIL 163 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122702255|emb|CAL88318.1| GTPase [Helicobacter pylori] Length = 168 Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 55/159 (34%), Positives = 83/159 (52%), Gaps = 6/159 (3%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAI+G PNVGKS+LFNRL K+++A+ + G TRD + +NG ++DT G+A Sbjct: 7 TIAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA-- 64 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSNKM 121 K+ ++K++ A + LIL+++D K + P D I F + K N +V NK+ Sbjct: 65 KDAFLSKEIKAFNLKAAQMSDLILYVVDGK--LIPSDEDIKLFREVFKINPNCFLVINKI 122 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 D + Y S + IS H+ G S L I Sbjct: 123 DNDKEKERAYAFSSFGMPKSFNISVSHNRGISVLIDAIL 161 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 37/127 (29%), Positives = 63/127 (49%), Gaps = 4/127 (3%) Query: 199 NISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDT 258 N S IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT Sbjct: 1 NTSTLKTIAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDT 60 Query: 259 AGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVV 318 GM K + +++ ++ +K + S + + ++D + +D+++ VF Sbjct: 61 GGMAKDAFLSKEIKAFNLKAAQMS----DLILYVVDGKLIPSDEDIKLFREVFKINPNCF 116 Query: 319 LALNKWD 325 L +NK D Sbjct: 117 LVINKID 123 >gi|122700833|emb|CAL88005.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 52/159 (32%), Positives = 83/159 (52%), Gaps = 6/159 (3%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGMA-- 66 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSNKM 121 K+ ++K++ A + LIL+++D K+ P D + F + K N +V NK+ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVINKI 124 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 D + Y S + IS H+ G S L + Sbjct: 125 DNDKEKERAYAFSSFGIPKSFNISVSHNRGISALIDAVL 163 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD + +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122700607|emb|CAL87892.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 54/159 (33%), Positives = 83/159 (52%), Gaps = 6/159 (3%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA-- 66 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSNKM 121 K+ ++K++ A + LIL+++D K+ P D I F + K N +V NK+ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVINKI 124 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 D + Y S + IS H+ G S L I Sbjct: 125 DNDKEKERSYAFSSFGIPKSFNISVSHNRGISALIDAIL 163 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|253573863|ref|ZP_04851205.1| tRNA modification GTPase TrmE [Paenibacillus sp. oral taxon 786 str. D14] gi|251846340|gb|EES74346.1| tRNA modification GTPase TrmE [Paenibacillus sp. oral taxon 786 str. D14] Length = 459 Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 50/165 (30%), Positives = 92/165 (55%), Gaps = 13/165 (7%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T AIVG PNVGKS+L N L ++ A+V + PG TRD + IN + ++DTAGI + Sbjct: 223 TTAIVGRPNVGKSSLMNALARENKAIVTDIPGTTRDVIEEYVTINNIPLKLLDTAGIRE- 281 Query: 64 KNCSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIII----VS 118 + +Q+ ++++ A++EA LIL +++S + + A+ L+ ++ +++ + Sbjct: 282 -TMDVVEQIGVERSKAAVSEADLILLVLNSAEALHEDEIALMEQLKGRSTIVLLNKIDLP 340 Query: 119 NKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 ++D + +R F E + IVE+S + + G L I ++F Sbjct: 341 QQLDREVVRRYFPE------ESIVELSVKTEEGLDHLEDAIARMF 379 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 60/209 (28%), Positives = 104/209 (49%), Gaps = 26/209 (12%) Query: 167 YPNHPLEMIENNKRNEESPKENITSEGKSSV---KNISKPLR----IAVVGRPNVGKSTL 219 YP H +E + E+ + SEG ++ N K LR A+VGRPNVGKS+L Sbjct: 181 YPEHDVESMTMAFIKEKCAE---VSEGIDALLKTANQGKILREGITTAIVGRPNVGKSSL 237 Query: 220 INRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKS 279 +N L N+ + G TRD + N P+++ DTAG+R+ + +EQ V++S Sbjct: 238 MNALARENKAIVTDIPGTTRDVIEEYVTINNIPLKLLDTAGIRETMDV---VEQIGVERS 294 Query: 280 MQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRT 339 +V + +++L++ + ++ +++ + G + ++ LNK D L Q L Sbjct: 295 KAAVSEADLILLVLNSAEALHEDEIALMEQL--KGRSTIVLLNKID-------LPQQLDR 345 Query: 340 KAIKN-LPQIGDIYINTISGRTGEGLDDL 367 + ++ P+ I +S +T EGLD L Sbjct: 346 EVVRRYFPEES---IVELSVKTEEGLDHL 371 >gi|242255814|gb|ACS88891.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 85/162 (52%), Gaps = 6/162 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 K+D + Y S + IS H+ G S L I + Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISTLIDAILR 164 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122702429|emb|CAL88405.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGATRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISAL 158 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGATRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122701477|emb|CAL88128.1| GTPase [Helicobacter pylori] gi|122702565|emb|CAL88472.1| GTPase [Helicobacter pylori] gi|122702569|emb|CAL88474.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 85/162 (52%), Gaps = 6/162 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 K+D + Y S + IS H+ G S L I + Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISALIDAILR 164 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122700887|emb|CAL88032.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQVSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISALIDAIL 163 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + + + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLK----AAQVSDLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|317452845|emb|CBL87858.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISALIDAIL 163 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122702871|emb|CAL88625.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPNDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERSYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 84/172 (48%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIP-NDEDLKLFREVFKTNPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R+ A + I+ R L D ++S L +N+ Sbjct: 125 D--NDK----EKERSYAFSSFGMPKSFNISVSHNRGISALIDAILSALNLNQ 170 >gi|122702471|emb|CAL88426.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDVKS--IPSDEDIKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISAL 158 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDVKSIPSD-EDIKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122701581|emb|CAL88180.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYVFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|317452835|emb|CBL87853.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREIFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERSYAFSSFGMPKSFNISVSHNRGISAL 158 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ +F L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREIFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|292806624|gb|ADE42442.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 83/161 (51%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 G ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 KG--ALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISTLIDAIL 163 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKGA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|292806590|gb|ADE42425.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 85/162 (52%), Gaps = 6/162 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 K+D + Y S + IS H+ G S L I + Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISALIDAILR 164 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|292806414|gb|ADE42337.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806504|gb|ADE42382.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 52/162 (32%), Positives = 85/162 (52%), Gaps = 6/162 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 K+D + Y S + IS H+ G S L + + Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISALIDAVLR 164 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122702557|emb|CAL88468.1| GTPase [Helicobacter pylori] gi|122702575|emb|CAL88477.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKERERAYAFSSFGMPKSFNISVSHNRGISAL 158 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|18075587|emb|CAD11189.1| GTP-binding protein [Helicobacter pylori] gi|18075589|emb|CAD11190.1| GTP-binding protein [Helicobacter pylori] gi|18075591|emb|CAD11191.1| GTP-binding protein [Helicobacter pylori] gi|122700753|emb|CAL87965.1| GTPase [Helicobacter pylori] gi|122700759|emb|CAL87968.1| GTPase [Helicobacter pylori] gi|122700763|emb|CAL87970.1| GTPase [Helicobacter pylori] gi|122700835|emb|CAL88006.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISALIDAIL 163 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|292806528|gb|ADE42394.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 53/164 (32%), Positives = 85/164 (51%), Gaps = 6/164 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 K+D + Y S + IS H+ G S L I + Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISALIDAILNVL 166 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122702263|emb|CAL88322.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISAL 158 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122700667|emb|CAL87922.1| GTPase [Helicobacter pylori] gi|122700867|emb|CAL88022.1| GTPase [Helicobacter pylori] gi|122701573|emb|CAL88176.1| GTPase [Helicobacter pylori] gi|122702389|emb|CAL88385.1| GTPase [Helicobacter pylori] gi|122702437|emb|CAL88409.1| GTPase [Helicobacter pylori] gi|122702443|emb|CAL88412.1| GTPase [Helicobacter pylori] gi|122702465|emb|CAL88423.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISAL 158 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|315038512|ref|YP_004032080.1| GTP-binding protein Era [Lactobacillus amylovorus GRL 1112] gi|312276645|gb|ADQ59285.1| GTP-binding protein Era [Lactobacillus amylovorus GRL 1112] Length = 301 Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 54/162 (33%), Positives = 89/162 (54%), Gaps = 8/162 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTL N LV +K+A+ N P TR+R+ G + + VDT GI Sbjct: 11 VALVGRPNVGKSTLMNYLVGQKVAITSNKPQTTRNRISGIYTSDDMQIVFVDTPGIFK-P 69 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + M+ + ++N+ L+LF+++ + I D I L++ +P+ +V NK+D + Sbjct: 70 HSKLDDYMDKASLSSLNDVDLVLFMVEPEK-IGKGDQYIADLLKEVKVPVFLVINKVD-Q 127 Query: 125 IAQRNFYEI----YSLD-FKEIVEISAEHDLGTSELHSVIFK 161 I I + L+ FKEI+ ISA +G +L + + K Sbjct: 128 IHPNKLLPIMDSYHKLEGFKEILPISATQGIGIEDLLATLNK 169 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 50/168 (29%), Positives = 84/168 (50%), Gaps = 13/168 (7%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP- 264 +A+VGRPNVGKSTL+N L+G +T ++ TR+ +S + + I DT G+ KP Sbjct: 11 VALVGRPNVGKSTLMNYLVGQKVAITSNKPQTTRNRISGIYTSDDMQIVFVDTPGIFKPH 70 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 S++ + ++ K S+ S+ + + +++ K D I D + V L +NK Sbjct: 71 SKLDDYMD----KASLSSLNDVDLVLFMVEPE-KIGKGDQYIADLLKEVKVPVFLVINKV 125 Query: 325 DMVS-DKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSV 371 D + +KL + D K G I IS G G++DL+ ++ Sbjct: 126 DQIHPNKLLPIMDSYHKL------EGFKEILPISATQGIGIEDLLATL 167 >gi|222530701|ref|YP_002574583.1| tRNA modification GTPase TrmE [Caldicellulosiruptor bescii DSM 6725] gi|222457548|gb|ACM61810.1| tRNA modification GTPase TrmE [Caldicellulosiruptor bescii DSM 6725] Length = 455 Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 65/185 (35%), Positives = 99/185 (53%), Gaps = 13/185 (7%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 IYT+ IVG PNVGKS+L NRL+K++ A+V + PG TRD + I GV + DTAG+ Sbjct: 221 IYTV-IVGRPNVGKSSLLNRLLKEEKAIVTDIPGTTRDVIEEVLDIEGVPIILADTAGVR 279 Query: 62 DGKNCSIAKQMNDQTEL-AINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 K I +++ + L +I A L+LF+++S +GI D I F KN I++ NK Sbjct: 280 --KTEDIVEKIGVKKTLESIERADLVLFMVES-SGILQEDLEI--FEAIKNKRFIVIVNK 334 Query: 121 MD--TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF-KIFKQKYPNHPLEMIEN 177 +D +++Q + I+ KE + IS E D + I ++ Q H +I N Sbjct: 335 IDKEVKVSQDDIKRIFG---KEGIFISVERDKNLELVEKAIANEVLNQNIETHDSVLITN 391 Query: 178 NKRNE 182 + E Sbjct: 392 LRHKE 396 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 42/128 (32%), Positives = 72/128 (56%), Gaps = 6/128 (4%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K I + +VGRPNVGKS+L+NRLL + + G TRD + + + PI + D Sbjct: 215 KAIKSGIYTVIVGRPNVGKSSLLNRLLKEEKAIVTDIPGTTRDVIEEVLDIEGVPIILAD 274 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+RK I E + VKK+++S+ + + +++++ ++DL I +++ N V Sbjct: 275 TAGVRKTEDIVEKI---GVKKTLESIERADLVLFMVESS-GILQEDLEIFEAIKNKRFIV 330 Query: 318 VLALNKWD 325 + +NK D Sbjct: 331 I--VNKID 336 >gi|122702399|emb|CAL88390.1| GTPase [Helicobacter pylori] gi|122702503|emb|CAL88442.1| GTPase [Helicobacter pylori] gi|122702831|emb|CAL88605.1| GTPase [Helicobacter pylori] gi|195954199|gb|ACG58805.1| YphC [Helicobacter pylori] gi|195954201|gb|ACG58806.1| YphC [Helicobacter pylori] gi|195954203|gb|ACG58807.1| YphC [Helicobacter pylori] gi|195954213|gb|ACG58812.1| YphC [Helicobacter pylori] gi|195954221|gb|ACG58816.1| YphC [Helicobacter pylori] Length = 170 Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGAPKSFNISVSHNRGISAL 158 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122700719|emb|CAL87948.1| GTPase [Helicobacter pylori] gi|292806668|gb|ADE42464.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806676|gb|ADE42468.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122700599|emb|CAL87888.1| GTPase [Helicobacter pylori] gi|122700735|emb|CAL87956.1| GTPase [Helicobacter pylori] gi|122700809|emb|CAL87993.1| GTPase [Helicobacter pylori] gi|122700813|emb|CAL87995.1| GTPase [Helicobacter pylori] gi|122700819|emb|CAL87998.1| GTPase [Helicobacter pylori] gi|122701463|emb|CAL88121.1| GTPase [Helicobacter pylori] gi|122701483|emb|CAL88131.1| GTPase [Helicobacter pylori] gi|122701707|emb|CAL88243.1| GTPase [Helicobacter pylori] gi|122702183|emb|CAL88282.1| GTPase [Helicobacter pylori] gi|122702481|emb|CAL88431.1| GTPase [Helicobacter pylori] gi|122702509|emb|CAL88445.1| GTPase [Helicobacter pylori] gi|122702827|emb|CAL88603.1| GTPase [Helicobacter pylori] gi|195954209|gb|ACG58810.1| YphC [Helicobacter pylori] gi|195954211|gb|ACG58811.1| YphC [Helicobacter pylori] gi|292806464|gb|ADE42362.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806558|gb|ADE42409.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806568|gb|ADE42414.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806666|gb|ADE42463.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806686|gb|ADE42473.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISAL 158 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122700633|emb|CAL87905.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKSLNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGVPKSFNISVSHNRGISAL 158 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKSLNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|115605757|gb|ABJ15860.1| YphC [Helicobacter pylori] Length = 170 Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 54/159 (33%), Positives = 83/159 (52%), Gaps = 6/159 (3%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA-- 66 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSNKM 121 K+ ++K++ A + LIL+++D K+ P D I F + K N +V NK+ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVINKI 124 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 D + Y S + IS H+ G S L I Sbjct: 125 DNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122702423|emb|CAL88402.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISVLIDAIL 163 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122702683|emb|CAL88531.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 52/164 (31%), Positives = 85/164 (51%), Gaps = 6/164 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINSNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 K+D + Y S + IS H+ G S L + + Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLNVL 166 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 85/172 (49%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINSNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D +++VL++N+ Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLNVLDLNQ 170 >gi|122701355|emb|CAL88067.1| GTPase [Helicobacter pylori] gi|122702169|emb|CAL88275.1| GTPase [Helicobacter pylori] gi|122702319|emb|CAL88350.1| GTPase [Helicobacter pylori] gi|122702421|emb|CAL88401.1| GTPase [Helicobacter pylori] gi|122702587|emb|CAL88483.1| GTPase [Helicobacter pylori] gi|292806660|gb|ADE42460.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISAL 158 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122700805|emb|CAL87991.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREIFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISTL 158 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ +F L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREIFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122702887|emb|CAL88633.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERSYAFSSFGVPKSFNISVSHNRGISALIDAIL 163 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122701399|emb|CAL88089.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEMELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEMELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|257470414|ref|ZP_05634505.1| tRNA modification GTPase TrmE [Fusobacterium ulcerans ATCC 49185] gi|317064622|ref|ZP_07929107.1| thiophene and furan oxidation protein THDF [Fusobacterium ulcerans ATCC 49185] gi|313690298|gb|EFS27133.1| thiophene and furan oxidation protein THDF [Fusobacterium ulcerans ATCC 49185] Length = 456 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 42/132 (31%), Positives = 77/132 (58%), Gaps = 5/132 (3%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K I + ++ A+VG+PNVGKS+++N +L R + +G TRD + N K P+ + D Sbjct: 215 KMIKEGIKTAIVGKPNVGKSSILNSVLKEERAIVTHVAGTTRDVIEEVVNLKGIPLVLVD 274 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+RK + E++ V+KS Q + + + + ++D + +++D+RI +++ V Sbjct: 275 TAGIRKTDDLVENI---GVEKSKQLIESADLILFVVDGSRALDEEDMRIHEAI--KAEKV 329 Query: 318 VLALNKWDMVSD 329 + LNK D+ D Sbjct: 330 IGILNKIDIRED 341 Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 40/120 (33%), Positives = 68/120 (56%), Gaps = 5/120 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AIVG PNVGKS++ N ++K++ A+V + G TRD + + G+ +VDTAGI K Sbjct: 224 AIVGKPNVGKSSILNSVLKEERAIVTHVAGTTRDVIEEVVNLKGIPLVLVDTAGIR--KT 281 Query: 66 CSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + + ++++ I A LILF++D + D I ++ + +I + NK+D R Sbjct: 282 DDLVENIGVEKSKQLIESADLILFVVDGSRALDEEDMRIHEAIKAE--KVIGILNKIDIR 339 >gi|242255838|gb|ACS88903.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFVGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 50/171 (29%), Positives = 82/171 (47%), Gaps = 12/171 (7%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFVGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEIN 375 D +DK + R A + I+ R L D ++S L +N Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSALNLN 169 >gi|122702261|emb|CAL88321.1| GTPase [Helicobacter pylori] gi|122702271|emb|CAL88326.1| GTPase [Helicobacter pylori] gi|122702339|emb|CAL88360.1| GTPase [Helicobacter pylori] gi|122702375|emb|CAL88378.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGTPKSFNISVSHNRGISAL 158 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|292806574|gb|ADE42417.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 52/162 (32%), Positives = 85/162 (52%), Gaps = 6/162 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREIFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 K+D + Y S + IS H+ G S L + + Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLR 164 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ +F L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREIFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122702293|emb|CAL88337.1| GTPase [Helicobacter pylori] gi|122702303|emb|CAL88342.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYTFSSFGAPKSFNISVSHNRGISAL 158 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122701473|emb|CAL88126.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERSYAFSSFGMPKSFNISVSHNRGISAL 158 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R+ A + I+ R L D ++S L +N+ Sbjct: 125 D--NDK----EKERSYAFSSFGMPKSFNISVSHNRGISALIDAVLSALNLNQ 170 >gi|122700839|emb|CAL88008.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 53/159 (33%), Positives = 83/159 (52%), Gaps = 6/159 (3%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGMA-- 66 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSNKM 121 K+ ++K++ A + LIL+++D K+ P D + F + K N +V NK+ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVINKI 124 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 D + Y S + IS H+ G S L I Sbjct: 125 DNDKEKERAYAFSSFGIPKSFNISVSHNRGISALIDAIL 163 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD + +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|317452853|emb|CBL87862.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KVDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 83/172 (48%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKV 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D ++S L +N+ Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSALNLNQ 170 >gi|302872910|ref|YP_003841546.1| tRNA modification GTPase TrmE [Caldicellulosiruptor obsidiansis OB47] gi|302575769|gb|ADL43560.1| tRNA modification GTPase TrmE [Caldicellulosiruptor obsidiansis OB47] Length = 455 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 55/150 (36%), Positives = 89/150 (59%), Gaps = 10/150 (6%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 IYT+ IVG PNVGKS+L NRL+K++ A+V + PG TRD + I G+ + DTAG+ Sbjct: 221 IYTV-IVGRPNVGKSSLLNRLLKEEKAIVTDIPGTTRDVIEEVLDIEGLPIILADTAGVR 279 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 ++ + K ++T +I A L+LF+++S +GI D I ++ K +++ NK+ Sbjct: 280 RTEDV-VEKIGVERTLKSIERADLVLFMVES-SGILQEDLEIFETIKDKRFVVLV--NKI 335 Query: 122 D--TRIAQRNFYEIYSLDFKEIVEISAEHD 149 D +++Q + I+ KE + IS EHD Sbjct: 336 DREVKVSQDDIKRIFG---KEGIFISVEHD 362 Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 37/128 (28%), Positives = 72/128 (56%), Gaps = 6/128 (4%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K I + +VGRPNVGKS+L+NRLL + + G TRD + + + PI + D Sbjct: 215 KAIKSGIYTVIVGRPNVGKSSLLNRLLKEEKAIVTDIPGTTRDVIEEVLDIEGLPIILAD 274 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ + E + V+++++S+ + + +++++ ++DL I +++ + V Sbjct: 275 TAGVRRTEDVVEKI---GVERTLKSIERADLVLFMVESS-GILQEDLEIFETIKDKRFVV 330 Query: 318 VLALNKWD 325 + +NK D Sbjct: 331 L--VNKID 336 >gi|292806688|gb|ADE42474.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 83/172 (48%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D ++S L +N+ Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSALNLNQ 170 >gi|122702407|emb|CAL88394.1| GTPase [Helicobacter pylori] Length = 168 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 55/159 (34%), Positives = 83/159 (52%), Gaps = 6/159 (3%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAI+G PNVGKS+LFNRL K+++A+ + G TRD + +NG ++DT G+A Sbjct: 7 TIAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA-- 64 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSNKM 121 K+ ++K++ A + LIL+++D K+ P D I F + K N +V NK+ Sbjct: 65 KDAFLSKEIKAFNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVINKI 122 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 D + Y S + IS H+ G S L I Sbjct: 123 DNDKEKEQTYAFSSFGMPKSFNISVSHNRGISVLIDAIL 161 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/128 (30%), Positives = 66/128 (51%), Gaps = 6/128 (4%) Query: 199 NISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDT 258 N S IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT Sbjct: 1 NTSTLKTIAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDT 60 Query: 259 AGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAV 317 GM K + +++ ++ +K + S + + ++D +IP + +D+++ VF Sbjct: 61 GGMAKDAFLSKEIKAFNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNC 115 Query: 318 VLALNKWD 325 L +NK D Sbjct: 116 FLVINKID 123 >gi|122702367|emb|CAL88374.1| GTPase [Helicobacter pylori] gi|122702395|emb|CAL88388.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISAL 158 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122702733|emb|CAL88556.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 85/162 (52%), Gaps = 6/162 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 K+D + Y S + IS H+ G S L I + Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISALIDAILR 164 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122702613|emb|CAL88496.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISVLIDAIL 163 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122701671|emb|CAL88225.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREIFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISALIDAIL 163 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ +F L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREIFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122702343|emb|CAL88362.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 87/161 (54%), Gaps = 7/161 (4%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL-HSVI 159 K+D + Y S + IS H+ G S L H+++ Sbjct: 123 KIDNDKEKERTYAFSSFGMPKSFNISVSHNRGISALIHAIL 163 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|148657267|ref|YP_001277472.1| tRNA modification GTPase TrmE [Roseiflexus sp. RS-1] gi|148569377|gb|ABQ91522.1| tRNA modification GTPase trmE [Roseiflexus sp. RS-1] Length = 471 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 51/174 (29%), Positives = 90/174 (51%), Gaps = 20/174 (11%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP 264 R A++GRPN GKS+L+N LL +R + G TRD++ + + P+ + DTAG+ + Sbjct: 228 RAALIGRPNAGKSSLLNALLRVDRAIVTPIPGTTRDTLEETASLGGVPVVLTDTAGIVES 287 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 + +E+ V +S Q+VR + ++++D ++P D IV +L LNK Sbjct: 288 D---DPVERLGVARSRQAVRLADLALLVVDVSLPVADDDREIV--ALTEEKRTILTLNKI 342 Query: 325 DMVSDKLNLL-------QDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSV 371 D++ +++ + +R KA + T+S TG+GLD+L +V Sbjct: 343 DLIDADRSIIAARQREYEQIRGKAFDAM--------VTVSALTGQGLDELGATV 388 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 49/166 (29%), Positives = 79/166 (47%), Gaps = 11/166 (6%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 A++G PN GKS+L N L++ A+V PG TRD L A + GV + DTAGI + + Sbjct: 230 ALIGRPNAGKSSLLNALLRVDRAIVTPIPGTTRDTLEETASLGGVPVVLTDTAGIVESDD 289 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 + + ++ A+ A L L ++D + D I + +K I+ NK+D Sbjct: 290 -PVERLGVARSRQAVRLADLALLVVDVSLPVADDDREIVALTEEKR--TILTLNKIDLID 346 Query: 126 A--------QRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 A QR + +I F +V +SA G EL + + ++ Sbjct: 347 ADRSIIAARQREYEQIRGKAFDAMVTVSALTGQGLDELGATVARLL 392 >gi|163802959|ref|ZP_02196846.1| GTP-binding protein Era [Vibrio sp. AND4] gi|159173249|gb|EDP58077.1| GTP-binding protein Era [Vibrio sp. AND4] Length = 320 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 48/149 (32%), Positives = 79/149 (53%), Gaps = 6/149 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N+++ +K+++ P TR R+ G VDT G+ + Sbjct: 29 IAIVGRPNVGKSTLLNKILGQKISITSRKPQTTRHRIMGVDTDGDYQAIYVDTPGLHIEE 88 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD-- 122 +I + MN ++++ +L+ FL+D T D + + L+K N P+++ NK+D Sbjct: 89 KRAINRLMNRAANSSLSDVNLVFFLVDG-THWTNDDEMVLTKLQKSNFPVVLCVNKVDNV 147 Query: 123 ---TRIAQRNFYEIYSLDFKEIVEISAEH 148 + Q +DF ++V ISA+H Sbjct: 148 QDRNEVMQHMMEMSKRMDFVDVVPISAKH 176 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/133 (29%), Positives = 63/133 (47%), Gaps = 5/133 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMR-KP 264 IA+VGRPNVGKSTL+N++LG +T + TR + ++ DT G+ + Sbjct: 29 IAIVGRPNVGKSTLLNKILGQKISITSRKPQTTRHRIMGVDTDGDYQAIYVDTPGLHIEE 88 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 R L + S+ V L+D T + D ++ + + VVL +NK Sbjct: 89 KRAINRLMNRAANSSLSDVNLV---FFLVDGT-HWTNDDEMVLTKLQKSNFPVVLCVNKV 144 Query: 325 DMVSDKLNLLQDL 337 D V D+ ++Q + Sbjct: 145 DNVQDRNEVMQHM 157 >gi|122701555|emb|CAL88167.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKASQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISTLIDAIL 163 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 40/121 (33%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K S S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKASQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|116074031|ref|ZP_01471293.1| tRNA modification GTPase [Synechococcus sp. RS9916] gi|116069336|gb|EAU75088.1| tRNA modification GTPase [Synechococcus sp. RS9916] Length = 463 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 52/161 (32%), Positives = 86/161 (53%), Gaps = 14/161 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI---A 61 +A+VG PNVGKS+L NRL +++ A+V + PG TRD L + ++ GV ++DTAGI Sbjct: 233 VALVGRPNVGKSSLLNRLSRRERAIVTDLPGTTRDLLESEIVLEGVPITLLDTAGIRVTT 292 Query: 62 DG-KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 D + IA+ + A+ A L+L L D G T D A+ + + + + ++V NK Sbjct: 293 DAVEQLGIARSHD-----ALASADLVLLLFDLSEGWTAEDQALLARI-PEGVEHLLVGNK 346 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 D + ++D V++SA+ G +EL + + Sbjct: 347 ADLAAPVQAEGRPLAVD----VQLSAQTGDGEAELVQAMLR 383 Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 40/125 (32%), Positives = 69/125 (55%), Gaps = 4/125 (3%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 LR+A+VGRPNVGKS+L+NRL R + G TRD + + PI + DTAG+R Sbjct: 231 LRVALVGRPNVGKSSLLNRLSRRERAIVTDLPGTTRDLLESEIVLEGVPITLLDTAGIRV 290 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 T+++EQ + +S ++ + + ++L D + + +D ++ + G +L NK Sbjct: 291 ---TTDAVEQLGIARSHDALASADLVLLLFDLSEGWTAEDQALLARI-PEGVEHLLVGNK 346 Query: 324 WDMVS 328 D+ + Sbjct: 347 ADLAA 351 >gi|18075565|emb|CAD11178.1| GTP-binding protein [Helicobacter pylori] gi|122702807|emb|CAL88593.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 85/162 (52%), Gaps = 6/162 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 K+D + Y S + IS H+ G S L I + Sbjct: 123 KIDNDKEKERSYAFSSFGIPKSFNISVSHNRGISALIDAILR 164 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|295695440|ref|YP_003588678.1| GTP-binding protein Era [Bacillus tusciae DSM 2912] gi|295411042|gb|ADG05534.1| GTP-binding protein Era [Bacillus tusciae DSM 2912] Length = 300 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 57/179 (31%), Positives = 87/179 (48%), Gaps = 9/179 (5%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAII-NG-VIFNIVDTAGIADG 63 A+VG PNVGKSTL NRL+ K+A++ + P TR+R+ G NG VIF +DT G+ Sbjct: 13 ALVGRPNVGKSTLLNRLIGTKIAIMSDKPQTTRNRIRGVLTRENGQVIF--LDTPGVHRP 70 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 K+ + MN + E L+LF+ID + P + I L+ P+ +V NK+D Sbjct: 71 KH-RLGDYMNRLALATLQEVDLVLFVIDVTSKFGPGEQVILDHLQGVETPVFLVINKIDL 129 Query: 124 RIAQRNFYEI----YSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 + I F+E+V +SA L IF Q +P + + ++ Sbjct: 130 VSPEELLPMIDEHRKRYPFREVVPVSAVKGTNLDRLEERIFATLPQGPAYYPADQVTDH 188 Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 207 AVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSR 266 A+VGRPNVGKSTL+NRL+G + + TR+ + +N + DT G+ +P Sbjct: 13 ALVGRPNVGKSTLLNRLIGTKIAIMSDKPQTTRNRIRGVLTRENGQVIFLDTPGVHRPK- 71 Query: 267 ITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 L + ++ +++ + + ++D T F + I+D + V L +NK D+ Sbjct: 72 --HRLGDYMNRLALATLQEVDLVLFVIDVTSKFGPGEQVILDHLQGVETPVFLVINKIDL 129 Query: 327 VS 328 VS Sbjct: 130 VS 131 >gi|122702595|emb|CAL88487.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYIVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 49/171 (28%), Positives = 82/171 (47%), Gaps = 12/171 (7%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYIVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEIN 375 D +DK + R A + I+ R L D ++S L +N Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSALNLN 169 >gi|122701509|emb|CAL88144.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFVGTTRDINKRKIALNGHKVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 83/172 (48%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFVGTTRDINKRKIALNGHKVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D ++S L +N+ Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSALNLNQ 170 >gi|122702625|emb|CAL88502.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 52/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + +S H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNVSVSHNRGISALIDAIL 163 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122701339|emb|CAL88059.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 84/162 (51%), Gaps = 6/162 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 G ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 KG--TLLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 K+D + Y S + IS H+ G S L I + Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAILR 164 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKGT 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|4467657|emb|CAB37780.1| GTP-binding protein homologue [Helicobacter pylori] gi|122701615|emb|CAL88197.1| GTPase [Helicobacter pylori] gi|122701685|emb|CAL88232.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISAL 158 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|292806518|gb|ADE42389.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISAL 158 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|227878694|ref|ZP_03996608.1| GTP-binding protein [Lactobacillus crispatus JV-V01] gi|256843288|ref|ZP_05548776.1| GTP-binding protein Era [Lactobacillus crispatus 125-2-CHN] gi|256850355|ref|ZP_05555783.1| GTP-binding protein Era [Lactobacillus crispatus MV-1A-US] gi|262046497|ref|ZP_06019459.1| GTP-binding protein Era [Lactobacillus crispatus MV-3A-US] gi|293380657|ref|ZP_06626708.1| GTP-binding protein Era [Lactobacillus crispatus 214-1] gi|312978179|ref|ZP_07789923.1| GTP-binding protein Era [Lactobacillus crispatus CTV-05] gi|227861709|gb|EEJ69314.1| GTP-binding protein [Lactobacillus crispatus JV-V01] gi|256614708|gb|EEU19909.1| GTP-binding protein Era [Lactobacillus crispatus 125-2-CHN] gi|256712752|gb|EEU27745.1| GTP-binding protein Era [Lactobacillus crispatus MV-1A-US] gi|260573368|gb|EEX29926.1| GTP-binding protein Era [Lactobacillus crispatus MV-3A-US] gi|290922785|gb|EFD99736.1| GTP-binding protein Era [Lactobacillus crispatus 214-1] gi|310894897|gb|EFQ43967.1| GTP-binding protein Era [Lactobacillus crispatus CTV-05] Length = 300 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 56/172 (32%), Positives = 92/172 (53%), Gaps = 12/172 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTL N LV +K+A+ N P TR+R+ G + + VDT GI Sbjct: 11 VALVGRPNVGKSTLMNYLVGQKVAITSNKPQTTRNRISGIYTSDEMQVVFVDTPGIFK-P 69 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + M+ + ++N+ L+LF+++ + + D I + L++ +P+++V NK+D Sbjct: 70 HSKLDDYMDKASVSSLNDVDLVLFMVEPEE-MGKGDQYIANLLKEVKVPVLLVINKVD-E 127 Query: 125 IAQRNFYEI----YSLD-FKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHP 171 I I + L+ FKEI+ ISA +G +L K K+ P P Sbjct: 128 IHPNKLLPIMDSYHKLEGFKEILPISATQGIGIEDL----LKTIKEYLPVGP 175 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 49/169 (28%), Positives = 81/169 (47%), Gaps = 11/169 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VGRPNVGKSTL+N L+G +T ++ TR+ +S + + DT G+ KP Sbjct: 11 VALVGRPNVGKSTLMNYLVGQKVAITSNKPQTTRNRISGIYTSDEMQVVFVDTPGIFKPH 70 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L+ K S+ S+ + + +++ K D I + + V+L +NK D Sbjct: 71 ---SKLDDYMDKASVSSLNDVDLVLFMVEPE-EMGKGDQYIANLLKEVKVPVLLVINKVD 126 Query: 326 MVS-DKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 + +KL + D K G I IS G G++DL+ ++ E Sbjct: 127 EIHPNKLLPIMDSYHKL------EGFKEILPISATQGIGIEDLLKTIKE 169 >gi|166032899|ref|ZP_02235728.1| hypothetical protein DORFOR_02620 [Dorea formicigenerans ATCC 27755] gi|166027256|gb|EDR46013.1| hypothetical protein DORFOR_02620 [Dorea formicigenerans ATCC 27755] Length = 470 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 54/165 (32%), Positives = 89/165 (53%), Gaps = 9/165 (5%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PN GKS+L N L+ ++ A+V G TRD L + G+ NIVDTAGI D ++ Sbjct: 227 IVGKPNAGKSSLLNVLLGEERAIVTEIAGTTRDVLEEHMNLQGISLNIVDTAGIRDTEDV 286 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 + K D+ + +A LI+++ID+ A + D I + + I++ ++T + Sbjct: 287 -VEKIGVDRAKENAKDADLIMYVIDASAPLDENDDDIMRMIYGRKAIILLNKADLNTILG 345 Query: 127 ----QRNFYEIYSLD----FKEIVEISAEHDLGTSELHSVIFKIF 163 ++ + EI L+ F I+EISA++ G SEL + ++F Sbjct: 346 KDEIKKKYSEINQLESCDIFPAIIEISAKNGQGISELEQTLKEMF 390 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 56/207 (27%), Positives = 107/207 (51%), Gaps = 17/207 (8%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 I + ++ +VG+PN GKS+L+N LLG R + +G TRD + N + + I DTA Sbjct: 219 IKEGIKTVIVGKPNAGKSSLLNVLLGEERAIVTEIAGTTRDVLEEHMNLQGISLNIVDTA 278 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R + E + V ++ ++ + + + ++DA+ P ++ D I+ ++ G ++ Sbjct: 279 GIRDTEDVVEKI---GVDRAKENAKDADLIMYVIDASAPLDENDDDIMRMIY--GRKAII 333 Query: 320 ALNKWDMVSDKLNLLQDLRTKAIKNLPQI--GDIY--INTISGRTGEGLDDLMVSVLEIN 375 LNK D+ L +D K + Q+ DI+ I IS + G+G+ +L ++ E+ Sbjct: 334 LLNKADL---NTILGKDEIKKKYSEINQLESCDIFPAIIEISAKNGQGISELEQTLKEM- 389 Query: 376 KLWKTRITTS---YLNSWLQKTQLQNP 399 ++ +I+ + Y+ + KT L N Sbjct: 390 -FFEGKISFNDEIYITNVRHKTALNNA 415 >gi|122702357|emb|CAL88369.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 52/162 (32%), Positives = 85/162 (52%), Gaps = 6/162 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLSRERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 K+D + Y S + IS H+ G S L + + Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISALIDAVLR 164 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLSRERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122702405|emb|CAL88393.1| GTPase [Helicobacter pylori] gi|122702411|emb|CAL88396.1| GTPase [Helicobacter pylori] gi|122702413|emb|CAL88397.1| GTPase [Helicobacter pylori] gi|122702415|emb|CAL88398.1| GTPase [Helicobacter pylori] gi|122702419|emb|CAL88400.1| GTPase [Helicobacter pylori] Length = 168 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 55/159 (34%), Positives = 83/159 (52%), Gaps = 6/159 (3%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAI+G PNVGKS+LFNRL K+++A+ + G TRD + +NG ++DT G+A Sbjct: 7 TIAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA-- 64 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSNKM 121 K+ ++K++ A + LIL+++D K + P D I F + K N +V NK+ Sbjct: 65 KDAFLSKEIKAFNLKAAQMSDLILYVVDGK--LIPSDEDIKLFREVFKINPNCFLVINKI 122 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 D + Y S + IS H+ G S L I Sbjct: 123 DNDKEKERTYAFSSFGMPKSFNISVSHNRGISVLIDAIL 161 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 37/127 (29%), Positives = 63/127 (49%), Gaps = 4/127 (3%) Query: 199 NISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDT 258 N S IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT Sbjct: 1 NTSTLKTIAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDT 60 Query: 259 AGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVV 318 GM K + +++ ++ +K + S + + ++D + +D+++ VF Sbjct: 61 GGMAKDAFLSKEIKAFNLKAAQMS----DLILYVVDGKLIPSDEDIKLFREVFKINPNCF 116 Query: 319 LALNKWD 325 L +NK D Sbjct: 117 LVINKID 123 >gi|122702453|emb|CAL88417.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISTL 158 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122702329|emb|CAL88355.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYTFSSFGTPKSFNISVSHNRGISAL 158 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|93004280|gb|ABE97060.1| YphC [Helicobacter pylori] gi|122700815|emb|CAL87996.1| GTPase [Helicobacter pylori] gi|122700849|emb|CAL88013.1| GTPase [Helicobacter pylori] gi|122700873|emb|CAL88025.1| GTPase [Helicobacter pylori] gi|122702547|emb|CAL88463.1| GTPase [Helicobacter pylori] gi|292806580|gb|ADE42420.1| GTP-binding protein-like protein [Helicobacter pylori] gi|317452829|emb|CBL87850.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISALIDAIL 163 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122702461|emb|CAL88421.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 52/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L + Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISTLVDAVL 163 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122702139|emb|CAL88260.1| GTPase [Helicobacter pylori] gi|317452841|emb|CBL87856.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISTL 158 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122702301|emb|CAL88341.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYTFSSFGTPKSFNISVSHNRGISAL 158 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|292806548|gb|ADE42404.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERSYAFSSFGIPKSFNISVSHNRGISALIDAIL 163 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122700793|emb|CAL87985.1| GTPase [Helicobacter pylori] gi|122700897|emb|CAL88037.1| GTPase [Helicobacter pylori] gi|122702145|emb|CAL88263.1| GTPase [Helicobacter pylori] gi|122702403|emb|CAL88392.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERSYAFSSFGMPKSFNISVSHNRGISAL 158 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|242255888|gb|ACS88928.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYIVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKEQAYAFSSFGMPKSFNISVSHNRGISTLIDAIL 163 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYIVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|205422284|sp|A5UY19|MNME_ROSS1 RecName: Full=tRNA modification GTPase mnmE Length = 461 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 51/174 (29%), Positives = 90/174 (51%), Gaps = 20/174 (11%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP 264 R A++GRPN GKS+L+N LL +R + G TRD++ + + P+ + DTAG+ + Sbjct: 218 RAALIGRPNAGKSSLLNALLRVDRAIVTPIPGTTRDTLEETASLGGVPVVLTDTAGIVES 277 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 + +E+ V +S Q+VR + ++++D ++P D IV +L LNK Sbjct: 278 D---DPVERLGVARSRQAVRLADLALLVVDVSLPVADDDREIV--ALTEEKRTILTLNKI 332 Query: 325 DMVSDKLNLL-------QDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSV 371 D++ +++ + +R KA + T+S TG+GLD+L +V Sbjct: 333 DLIDADRSIIAARQREYEQIRGKAFDAM--------VTVSALTGQGLDELGATV 378 Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 49/166 (29%), Positives = 79/166 (47%), Gaps = 11/166 (6%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 A++G PN GKS+L N L++ A+V PG TRD L A + GV + DTAGI + + Sbjct: 220 ALIGRPNAGKSSLLNALLRVDRAIVTPIPGTTRDTLEETASLGGVPVVLTDTAGIVESDD 279 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 + + ++ A+ A L L ++D + D I + +K I+ NK+D Sbjct: 280 -PVERLGVARSRQAVRLADLALLVVDVSLPVADDDREIVALTEEKR--TILTLNKIDLID 336 Query: 126 A--------QRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 A QR + +I F +V +SA G EL + + ++ Sbjct: 337 ADRSIIAARQREYEQIRGKAFDAMVTVSALTGQGLDELGATVARLL 382 >gi|122702149|emb|CAL88265.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 52/162 (32%), Positives = 85/162 (52%), Gaps = 6/162 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 K+D + Y S + IS H+ G S L + + Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISTLIDAVLR 164 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|325261977|ref|ZP_08128715.1| GTP-binding protein Era [Clostridium sp. D5] gi|324033431|gb|EGB94708.1| GTP-binding protein Era [Clostridium sp. D5] Length = 299 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 81/161 (50%), Gaps = 5/161 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + ++G PNVGKSTL N L+ +K+A+ N P TR+R+ VDT GI K Sbjct: 10 VTLIGRPNVGKSTLMNYLIGQKIAITSNKPQTTRNRIQTVLTTEEGQIVFVDTPGIHKAK 69 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N + + M + E +NE ++L+L++ I + I L + P+I+V NK D Sbjct: 70 N-KLGEYMVNVAERTLNEVDVVLWLVEPSTFIGAGEQHIIEQLGRVKTPVILVINKTDMV 128 Query: 125 IAQR--NFYEIY--SLDFKEIVEISAEHDLGTSELHSVIFK 161 + F + Y + DF IV +SA + T EL VI + Sbjct: 129 KKEEVLTFIDAYQKAYDFAAIVPVSARNGDNTDELVKVIMQ 169 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 41/169 (24%), Positives = 79/169 (46%), Gaps = 10/169 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 + ++GRPNVGKSTL+N L+G +T ++ TR+ + + I DT G+ K Sbjct: 10 VTLIGRPNVGKSTLMNYLIGQKIAITSNKPQTTRNRIQTVLTTEEGQIVFVDTPGIHKAK 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + V + +++ + + L++ + + I++ + V+L +NK D Sbjct: 70 N---KLGEYMVNVAERTLNEVDVVLWLVEPSTFIGAGEQHIIEQLGRVKTPVILVINKTD 126 Query: 326 MV-SDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 MV +++ D KA I +S R G+ D+L+ +++ Sbjct: 127 MVKKEEVLTFIDAYQKAYDFAA------IVPVSARNGDNTDELVKVIMQ 169 >gi|292806448|gb|ADE42354.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERSYAFSSFGIPKSFNISVSHNRGISTLIDAIL 163 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|242255940|gb|ACS88954.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 53/164 (32%), Positives = 85/164 (51%), Gaps = 6/164 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDVLLSKKIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 K+D + Y S + IS H+ G S L I + Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAILNVL 166 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 83/172 (48%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDV 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKKIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D +++VL +N+ Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILNVLNLNQ 170 >gi|242255936|gb|ACS88952.1| GTPase [Helicobacter pylori] gi|242255938|gb|ACS88953.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 53/164 (32%), Positives = 85/164 (51%), Gaps = 6/164 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 K+D + Y S + IS H+ G S L I + Sbjct: 123 KIDNDKEKDRAYAFSSFGMPKSFNISVSHNRGISALIDAILNVL 166 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|302877170|ref|YP_003845803.1| tRNA modification GTPase TrmE [Clostridium cellulovorans 743B] gi|307687869|ref|ZP_07630315.1| tRNA modification GTPase TrmE [Clostridium cellulovorans 743B] gi|302580027|gb|ADL54039.1| tRNA modification GTPase TrmE [Clostridium cellulovorans 743B] Length = 459 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 42/129 (32%), Positives = 74/129 (57%), Gaps = 5/129 (3%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L +VG+PNVGKS+L+N L NR + +G TRD + N PI++ D Sbjct: 218 KILREGLSTVIVGKPNVGKSSLLNLLTNENRAIVTDVAGTTRDVIEEYINMDGVPIKVID 277 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ + E + V+KS + + + I++LD++ +++DL+I D + + + V Sbjct: 278 TAGIRETDDLVEKI---GVEKSKEKIEEADLIILMLDSSRELDEEDLKIADYIKDKKYIV 334 Query: 318 VLALNKWDM 326 + NK D+ Sbjct: 335 L--FNKSDL 341 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 48/157 (30%), Positives = 85/157 (54%), Gaps = 4/157 (2%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PNVGKS+L N L + A+V + G TRD + ++GV ++DTAGI + + Sbjct: 228 IVGKPNVGKSSLLNLLTNENRAIVTDVAGTTRDVIEEYINMDGVPIKVIDTAGIRETDDL 287 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 + K ++++ I EA LI+ ++DS + D I +++ K I++ NK D + Sbjct: 288 -VEKIGVEKSKEKIEEADLIILMLDSSRELDEEDLKIADYIKDK--KYIVLFNKSDLK-G 343 Query: 127 QRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 + +I L+ K ++++S + G L +I ++F Sbjct: 344 KLKKEDIQCLNSKYMIDVSVFNGEGIERLKEIIKELF 380 >gi|122702535|emb|CAL88457.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREIFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISAL 158 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ +F L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREIFKINPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D ++S L++NK Sbjct: 125 D--NDK----EKERAYAFSSFGIPKSFNISVSHNRGISALIDAVLSTLDLNK 170 >gi|122701695|emb|CAL88237.1| GTPase [Helicobacter pylori] gi|122701699|emb|CAL88239.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYIVDGKS--IPSDEDIKLFREIFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERSYAFSSFGIPKSFNISVSHNRGISAL 158 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ +F L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYIVDGKSIPSD-EDIKLFREIFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|93004282|gb|ABE97061.1| YphC [Helicobacter pylori] gi|122701353|emb|CAL88066.1| GTPase [Helicobacter pylori] gi|122701445|emb|CAL88112.1| GTPase [Helicobacter pylori] gi|317452817|emb|CBL87844.1| GTP-binding protein-like protein [Helicobacter pylori] gi|317453541|emb|CBL87880.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 52/162 (32%), Positives = 85/162 (52%), Gaps = 6/162 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 K+D + Y S + IS H+ G S L + + Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLR 164 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|292806672|gb|ADE42466.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERSYAFSSFGMPKSFNISVSHNRGISTL 158 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|242255828|gb|ACS88898.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDVKS--IPSDENLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 49/171 (28%), Positives = 83/171 (48%), Gaps = 12/171 (7%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + ++L++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDVKSIPSD-ENLKLFREVFKTNPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEIN 375 D +DK + R A + I+ R L D ++S L +N Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSALNLN 169 >gi|122702829|emb|CAL88604.1| GTPase [Helicobacter pylori] gi|195954197|gb|ACG58804.1| YphC [Helicobacter pylori] Length = 170 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDTLLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNHNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISTLIDAIL 163 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 51/172 (29%), Positives = 86/172 (50%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDT 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T H L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNHNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D ++S L++N+ Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISTLIDAILSALDLNQ 170 >gi|122702427|emb|CAL88404.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISTLIDAIL 163 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122702455|emb|CAL88418.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGAPKSFNISVSHNRGISAL 158 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|292806664|gb|ADE42462.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKAINLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISAL 158 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKAINLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|291278439|ref|YP_003495274.1| tRNA modification GTPase TrmE [Deferribacter desulfuricans SSM1] gi|290753141|dbj|BAI79518.1| tRNA modification GTPase TrmE [Deferribacter desulfuricans SSM1] Length = 442 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 56/168 (33%), Positives = 89/168 (52%), Gaps = 29/168 (17%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAI+G PNVGKS+L N L+++ +V + PG TRD + + I G ++DTAGI Sbjct: 218 IAIIGKPNVGKSSLMNYLLRENRVIVSDIPGTTRDVVEEEINIKGYNVKLIDTAGI---- 273 Query: 65 NCSIAKQMNDQTEL--------AINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIII 116 + ND+ E+ +NEA+++LFL D + G+ D I + ++ KN II Sbjct: 274 -----RNSNDKIEVIGIEFSKNKLNEANIVLFLFDLEKGVDEDDLQIMNLVKDKN--IIK 326 Query: 117 VSNKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFK 164 V+NK+D ++ +D VEIS + G +L +++ K K Sbjct: 327 VANKLDKKM----------VDIDCDVEISVKTGEGVDDLLNILEKQIK 364 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 59/218 (27%), Positives = 106/218 (48%), Gaps = 29/218 (13%) Query: 195 SSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIE 254 + K +++ ++IA++G+PNVGKS+L+N LL NR++ G TRD V N K + ++ Sbjct: 207 ETFKYVNEGVKIAIIGKPNVGKSSLMNYLLRENRVIVSDIPGTTRDVVEEEINIKGYNVK 266 Query: 255 IFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTG 314 + DTAG+R + + +E ++ S + + L D ++ DL+I++ V Sbjct: 267 LIDTAGIRNSN---DKIEVIGIEFSKNKLNEANIVLFLFDLEKGVDEDDLQIMNLV--KD 321 Query: 315 HAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINT-ISGRTGEGLDDLMVSVLE 373 ++ NK D ++ DI + IS +TGEG+DDL+ ++LE Sbjct: 322 KNIIKVANKLD--------------------KKMVDIDCDVEISVKTGEGVDDLL-NILE 360 Query: 374 INKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLK 411 K K+ + + N L + ++ I N +K Sbjct: 361 --KQIKSIVVVNEDNKQLLSERQRDAFLEILNHIQDIK 396 >gi|122702637|emb|CAL88508.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 52/164 (31%), Positives = 85/164 (51%), Gaps = 6/164 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 K+D + Y S + IS H+ G S L + + Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLNVL 166 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 85/172 (49%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D +++VL++N+ Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLNVLDLNQ 170 >gi|122702633|emb|CAL88506.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGVSTLIDAIL 163 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122702315|emb|CAL88348.1| GTPase [Helicobacter pylori] gi|122702337|emb|CAL88359.1| GTPase [Helicobacter pylori] Length = 168 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 55/159 (34%), Positives = 83/159 (52%), Gaps = 6/159 (3%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAI+G PNVGKS+LFNRL K+++A+ + G TRD + +NG ++DT G+A Sbjct: 7 TIAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA-- 64 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSNKM 121 K+ ++K++ A + LIL+++D K+ P D I F + K N +V NK+ Sbjct: 65 KDAFLSKEIKAFNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVINKI 122 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 D + Y S + IS H+ G S L I Sbjct: 123 DNDKEKERAYAFSSFGMPKSFNISVSHNRGISVLIDAIL 161 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/128 (30%), Positives = 66/128 (51%), Gaps = 6/128 (4%) Query: 199 NISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDT 258 N S IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT Sbjct: 1 NTSTLKTIAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDT 60 Query: 259 AGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAV 317 GM K + +++ ++ +K + S + + ++D +IP + +D+++ VF Sbjct: 61 GGMAKDAFLSKEIKAFNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNC 115 Query: 318 VLALNKWD 325 L +NK D Sbjct: 116 FLVINKID 123 >gi|122700831|emb|CAL88004.1| GTPase [Helicobacter pylori] gi|122700869|emb|CAL88023.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRRIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISAL 158 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRRIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|292806458|gb|ADE42359.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 52/162 (32%), Positives = 85/162 (52%), Gaps = 6/162 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDSAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 K+D + Y S + IS H+ G S L + + Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISALIDAVLR 164 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDSAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|210623874|ref|ZP_03294109.1| hypothetical protein CLOHIR_02060 [Clostridium hiranonis DSM 13275] gi|210153300|gb|EEA84306.1| hypothetical protein CLOHIR_02060 [Clostridium hiranonis DSM 13275] Length = 299 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 57/151 (37%), Positives = 82/151 (54%), Gaps = 14/151 (9%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIING----VIFNIVDTAGI 60 ++IVG PNVGKSTL N +V +K+A++ + P TR+ + QA+ V+F +DT GI Sbjct: 7 VSIVGRPNVGKSTLMNNVVGEKIAIMSDKPQTTRNTI--QAVYTDDESQVVF--LDTPGI 62 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 KN + + M A + LILF++DS I P D I LR PI++V NK Sbjct: 63 HKPKN-KLGEIMVKAATDAFSNVDLILFVVDSSRKIGPGDRRIMEDLRGSKTPIVLVINK 121 Query: 121 MDTRIAQRNFYEIYSL-----DFKEIVEISA 146 +D + ++I + FKEIV ISA Sbjct: 122 IDQIEDKDELFDIIKMYDDEKMFKEIVPISA 152 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/129 (27%), Positives = 65/129 (50%), Gaps = 3/129 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +++VGRPNVGKSTL+N ++G + + TR+++ + + DT G+ KP Sbjct: 7 VSIVGRPNVGKSTLMNNVVGEKIAIMSDKPQTTRNTIQAVYTDDESQVVFLDTPGIHKPK 66 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + VK + + + + ++D++ D RI++ + + +VL +NK D Sbjct: 67 N---KLGEIMVKAATDAFSNVDLILFVVDSSRKIGPGDRRIMEDLRGSKTPIVLVINKID 123 Query: 326 MVSDKLNLL 334 + DK L Sbjct: 124 QIEDKDELF 132 >gi|122702287|emb|CAL88334.1| GTPase [Helicobacter pylori] gi|122702327|emb|CAL88354.1| GTPase [Helicobacter pylori] Length = 168 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 55/159 (34%), Positives = 83/159 (52%), Gaps = 6/159 (3%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAI+G PNVGKS+LFNRL K+++A+ + G TRD + +NG ++DT G+A Sbjct: 7 TIAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA-- 64 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSNKM 121 K+ ++K++ A + LIL+++D K+ P D I F + K N +V NK+ Sbjct: 65 KDAFLSKEIKAFNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVINKI 122 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 D + Y S + IS H+ G S L I Sbjct: 123 DNDKEKERTYAFSSFGMPKSFNISVSHNRGISVLIDAIL 161 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/128 (30%), Positives = 66/128 (51%), Gaps = 6/128 (4%) Query: 199 NISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDT 258 N S IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT Sbjct: 1 NTSTLKTIAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDT 60 Query: 259 AGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAV 317 GM K + +++ ++ +K + S + + ++D +IP + +D+++ VF Sbjct: 61 GGMAKDAFLSKEIKAFNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNC 115 Query: 318 VLALNKWD 325 L +NK D Sbjct: 116 FLVINKID 123 >gi|122700623|emb|CAL87900.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKSLNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGTPKSFNISVSHNRGISAL 158 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKSLNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|218288620|ref|ZP_03492897.1| GTP-binding protein Era [Alicyclobacillus acidocaldarius LAA1] gi|218241277|gb|EED08452.1| GTP-binding protein Era [Alicyclobacillus acidocaldarius LAA1] Length = 298 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 53/179 (29%), Positives = 89/179 (49%), Gaps = 6/179 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A++G PNVGKSTL N LV +K+A++ N P TR+R+ G +DT GI K Sbjct: 8 VALIGRPNVGKSTLLNALVGQKVAIMSNRPQTTRNRIRGVRTTETSQMIFIDTPGIHKPK 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 + + + M D +NE +I+ ++D+ + + P + I L + P+I+ NK+D Sbjct: 68 H-RLGEYMVDAALKTLNEVDVIVLVVDASSPVHPTEEEIAKQLERVRTPVILALNKVDAL 126 Query: 124 ---RIAQRNFYEIYSLD-FKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 + + E +L F+E V ISA L +I + + +P +MI + Sbjct: 127 DDRALVLKRIEEYQALRPFEEYVPISALKGEQVDLLAELIERRLPEGPKYYPDDMITDQ 185 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 45/169 (26%), Positives = 87/169 (51%), Gaps = 10/169 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKSTL+N L+G + ++ TR+ + + + DT G+ KP Sbjct: 8 VALIGRPNVGKSTLLNALVGQKVAIMSNRPQTTRNRIRGVRTTETSQMIFIDTPGIHKPK 67 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + V +++++ + ++++DA+ P + I + V+LALNK D Sbjct: 68 ---HRLGEYMVDAALKTLNEVDVIVLVVDASSPVHPTEEEIAKQLERVRTPVILALNKVD 124 Query: 326 MVSDKLNLLQDLRT-KAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 + D+ +L+ + +A++ + Y+ IS GE + DL+ ++E Sbjct: 125 ALDDRALVLKRIEEYQALRPFEE----YV-PISALKGEQV-DLLAELIE 167 >gi|158321890|ref|YP_001514397.1| tRNA modification GTPase TrmE [Alkaliphilus oremlandii OhILAs] gi|166988168|sp|A8MKR9|MNME_ALKOO RecName: Full=tRNA modification GTPase mnmE gi|158142089|gb|ABW20401.1| tRNA modification GTPase TrmE [Alkaliphilus oremlandii OhILAs] Length = 461 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 49/136 (36%), Positives = 76/136 (55%), Gaps = 6/136 (4%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K I + L +VG+PNVGKS+L+N L+ +R + G TRD + N K P+ + D Sbjct: 218 KIIREGLSTVIVGKPNVGKSSLLNALVRESRAIVTDVPGTTRDIIEEHLNIKGIPLRLID 277 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R I E + V++S + + IV+LDA+ ++DLRI++ + N V Sbjct: 278 TAGIRDTEDIVEKI---GVERSKELFNLADLIIVMLDASRELTEEDLRIIELIENKRALV 334 Query: 318 VLALNKWDMVSDKLNL 333 + +NK D+ KLNL Sbjct: 335 I--INKTDL-QQKLNL 347 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 43/116 (37%), Positives = 66/116 (56%), Gaps = 3/116 (2%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PNVGKS+L N LV++ A+V + PG TRD + I G+ ++DTAGI D ++ Sbjct: 228 IVGKPNVGKSSLLNALVRESRAIVTDVPGTTRDIIEEHLNIKGIPLRLIDTAGIRDTEDI 287 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + K ++++ N A LI+ ++D+ +T D I + K +II NK D Sbjct: 288 -VEKIGVERSKELFNLADLIIVMLDASRELTEEDLRIIELIENKRALVII--NKTD 340 >gi|292806512|gb|ADE42386.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREIFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 83/172 (48%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ +F L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREIFKINPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D ++S L +N+ Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSALNLNQ 170 >gi|260425018|ref|ZP_05733999.2| tRNA modification GTPase TrmE [Dialister invisus DSM 15470] gi|260403939|gb|EEW97486.1| tRNA modification GTPase TrmE [Dialister invisus DSM 15470] Length = 485 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 55/205 (26%), Positives = 102/205 (49%), Gaps = 18/205 (8%) Query: 167 YPNHPLE--MIENNKRNEESPKENITSEGKSSVKN--ISKPLRIAVVGRPNVGKSTLINR 222 YP LE +E E +++++ K S + I + LR A++GRPN GKS+L+N Sbjct: 207 YPEEDLEDLTMEETGDALEKIDKSLSALLKRSEEGRVIREGLRTAIIGRPNAGKSSLLNA 266 Query: 223 LLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQS 282 LL R + G TRD++ + + + DTAG+R+ +EQ ++++ S Sbjct: 267 LLQEERAIVTDVPGTTRDTIEEAVRISGVSLLLMDTAGLRETDN---KVEQIGIERARAS 323 Query: 283 VRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAI 342 + + + ++D + P +++D I+ S+ G ++ LNK+D+ + KA Sbjct: 324 MEKADLILAVIDGSSPLDEEDKEILHSL--VGKKAIVILNKYDLTPE---------VKAE 372 Query: 343 KNLPQIGDIYINTISGRTGEGLDDL 367 G + + ++S R G G+D+L Sbjct: 373 DIWEIAGHVPVVSLSARYGSGMDEL 397 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 84/161 (52%), Gaps = 3/161 (1%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PN GKS+L N L++++ A+V + PG TRD + I+GV ++DTAG+ + N Sbjct: 251 AIIGRPNAGKSSLLNALLQEERAIVTDVPGTTRDTIEEAVRISGVSLLLMDTAGLRETDN 310 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 + + ++ ++ +A LIL +ID + + D I L K +I+ + + Sbjct: 311 -KVEQIGIERARASMEKADLILAVIDGSSPLDEEDKEILHSLVGKKAIVILNKYDLTPEV 369 Query: 126 AQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQK 166 + +EI +V +SA + G EL + KI +++ Sbjct: 370 KAEDIWEIAG--HVPVVSLSARYGSGMDELREELRKITEKQ 408 >gi|122700917|emb|CAL88047.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 52/162 (32%), Positives = 85/162 (52%), Gaps = 6/162 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 K+D + Y S + IS H+ G S L + + Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLR 164 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|18075581|emb|CAD11186.1| GTP-binding protein [Helicobacter pylori] gi|122702305|emb|CAL88343.1| GTPase [Helicobacter pylori] gi|122702307|emb|CAL88344.1| GTPase [Helicobacter pylori] gi|122702321|emb|CAL88351.1| GTPase [Helicobacter pylori] gi|122702353|emb|CAL88367.1| GTPase [Helicobacter pylori] gi|122702799|emb|CAL88589.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGVPKSFNISVSHNRGISAL 158 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|292806570|gb|ADE42415.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 52/162 (32%), Positives = 85/162 (52%), Gaps = 6/162 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 K+D + Y S + IS H+ G S L + + Sbjct: 123 KIDNDKEKERSYAFSSFGMPKSFNISVSHNRGISALIDAVLR 164 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122701371|emb|CAL88075.1| GTPase [Helicobacter pylori] gi|122701395|emb|CAL88087.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYIVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 84/172 (48%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYIVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D ++S L++N+ Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSTLDLNQ 170 >gi|292806700|gb|ADE42480.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREIFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISAL 158 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ +F L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREIFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122702519|emb|CAL88449.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYIVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYIVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|115605755|gb|ABJ15859.1| YphC [Helicobacter pylori] Length = 170 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGMPKRFNISVSHNRGISAL 158 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D ++S L++N+ Sbjct: 125 D--NDK----EKERAYAFSSFGMPKRFNISVSHNRGISALIDAVLSALDLNQ 170 >gi|292806460|gb|ADE42360.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 52/162 (32%), Positives = 85/162 (52%), Gaps = 6/162 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 K+D + Y S + IS H+ G S L + + Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLR 164 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122702717|emb|CAL88548.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYIVDGKS--IPSDEDIKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERSYAFSSFGIPKSFNISVSHNRGISAL 158 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYIVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122702543|emb|CAL88461.1| GTPase [Helicobacter pylori] gi|122702749|emb|CAL88564.1| GTPase [Helicobacter pylori] gi|122702757|emb|CAL88568.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 52/162 (32%), Positives = 85/162 (52%), Gaps = 6/162 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 K+D + Y S + IS H+ G S L + + Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLR 164 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122700909|emb|CAL88043.1| GTPase [Helicobacter pylori] gi|122702283|emb|CAL88332.1| GTPase [Helicobacter pylori] gi|122702285|emb|CAL88333.1| GTPase [Helicobacter pylori] gi|122702299|emb|CAL88340.1| GTPase [Helicobacter pylori] gi|122702325|emb|CAL88353.1| GTPase [Helicobacter pylori] gi|122702765|emb|CAL88572.1| GTPase [Helicobacter pylori] gi|292806472|gb|ADE42366.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806578|gb|ADE42419.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806702|gb|ADE42481.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREIFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISAL 158 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ +F L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREIFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122700653|emb|CAL87915.1| GTPase [Helicobacter pylori] gi|122700671|emb|CAL87924.1| GTPase [Helicobacter pylori] gi|122701499|emb|CAL88139.1| GTPase [Helicobacter pylori] gi|122701605|emb|CAL88192.1| GTPase [Helicobacter pylori] gi|122701609|emb|CAL88194.1| GTPase [Helicobacter pylori] gi|242255850|gb|ACS88909.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|255320779|ref|ZP_05361954.1| GTP-binding protein Era [Acinetobacter radioresistens SK82] gi|262379445|ref|ZP_06072601.1| GTP-binding protein Era [Acinetobacter radioresistens SH164] gi|255302156|gb|EET81398.1| GTP-binding protein Era [Acinetobacter radioresistens SK82] gi|262298902|gb|EEY86815.1| GTP-binding protein Era [Acinetobacter radioresistens SH164] Length = 342 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 54/178 (30%), Positives = 87/178 (48%), Gaps = 6/178 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N L+ +K+++ P TR ++ G VDT G+ + Sbjct: 42 VAIVGRPNVGKSTLMNHLLGQKLSITSRKPQTTRHKIIGIDSREKSQAVYVDTPGMHKKE 101 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I K MN A+ + +L+LF++D+ T D + L+ +P+I+V NK+DT Sbjct: 102 VRAINKMMNRAAHSALRDVNLVLFVVDAHKW-TQNDDLVLEKLKNAEMPVILVINKIDTI 160 Query: 125 IAQRNFYEIYS-----LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 +R + ++F EIV +SA L I K + P + + I + Sbjct: 161 EEKRTLLPLIQERTKLMNFVEIVPVSALRGANLEHLRDTIDKYLPFQPPLYSFDQITD 218 Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 40/130 (30%), Positives = 69/130 (53%), Gaps = 5/130 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS-VSISWNWKNHPIEIFDTAGMRKP 264 +A+VGRPNVGKSTL+N LLG +T + TR + I K+ + + DT GM K Sbjct: 42 VAIVGRPNVGKSTLMNHLLGQKLSITSRKPQTTRHKIIGIDSREKSQAVYV-DTPGMHK- 99 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 + ++ + + + ++R + ++DA + DL +++ + N V+L +NK Sbjct: 100 -KEVRAINKMMNRAAHSALRDVNLVLFVVDAHKWTQNDDL-VLEKLKNAEMPVILVINKI 157 Query: 325 DMVSDKLNLL 334 D + +K LL Sbjct: 158 DTIEEKRTLL 167 >gi|225181151|ref|ZP_03734597.1| tRNA modification GTPase TrmE [Dethiobacter alkaliphilus AHT 1] gi|225168120|gb|EEG76925.1| tRNA modification GTPase TrmE [Dethiobacter alkaliphilus AHT 1] Length = 460 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 43/117 (36%), Positives = 72/117 (61%), Gaps = 3/117 (2%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AIVG PNVGKS+L N L+K++ A+V + PG TRD L + G+ +VDTAGI + + Sbjct: 224 AIVGRPNVGKSSLLNALLKEQRAIVTDIPGTTRDVLEESVNLGGIALTMVDTAGIRETTD 283 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 ++ K +++ A+ +A L+L+++D+ +T D + +K P+I++ NK D Sbjct: 284 -TVEKMGVERSREALGQADLVLYVLDASDDLTAEDIELLQAAGEK--PLIVIVNKTD 337 Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 41/129 (31%), Positives = 75/129 (58%), Gaps = 5/129 (3%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + LR A+VGRPNVGKS+L+N LL R + G TRD + S N + + DTA Sbjct: 217 LREGLRTAIVGRPNVGKSSLLNALLKEQRAIVTDIPGTTRDVLEESVNLGGIALTMVDTA 276 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R+ T+++E+ V++S +++ + + +LDA+ +D+ ++ + +++ Sbjct: 277 GIRET---TDTVEKMGVERSREALGQADLVLYVLDASDDLTAEDIELLQAAGEK--PLIV 331 Query: 320 ALNKWDMVS 328 +NK D+VS Sbjct: 332 IVNKTDLVS 340 >gi|122701391|emb|CAL88085.1| GTPase [Helicobacter pylori] gi|122701439|emb|CAL88109.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYIVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISTLIDAIL 163 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYIVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|292806642|gb|ADE42451.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KVDNDKEKERAYAFSSFGIPKSFNISVSHNRGISALIDAIL 163 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKV 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|242255922|gb|ACS88945.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINSNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINSNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122702207|emb|CAL88294.1| GTPase [Helicobacter pylori] gi|122702209|emb|CAL88295.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 83/161 (51%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KEALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGAPKSFNISVSHNRGISALIDAIL 163 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/122 (32%), Positives = 66/122 (54%), Gaps = 8/122 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-- 67 Query: 266 RITESLEQKTVKK-SMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNK 323 E+L K +K ++++ + + + ++D +IP + +D+++ VF T L +NK Sbjct: 68 ---EALLSKEIKALNLKAAQMSDLILYVVDGKSIPSD-EDIKLFREVFKTNPNCFLVINK 123 Query: 324 WD 325 D Sbjct: 124 ID 125 >gi|122702137|emb|CAL88259.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 85/162 (52%), Gaps = 6/162 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINHNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 K+D + Y S + IS H+ G S L I + Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISTLIDAILR 164 Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF H L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINHNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122700891|emb|CAL88034.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKATQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 83/172 (48%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKATQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D ++S L +NK Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSALNLNK 170 >gi|122702457|emb|CAL88419.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 82/156 (52%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 G ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 KG--ALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREIFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISAL 158 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKGA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ +F L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREIFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122702835|emb|CAL88607.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERSYAFSSFGIPKSFNISVSHNRGISALIDAIL 163 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|317452847|emb|CBL87859.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 83/172 (48%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D ++S L +NK Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSTLNLNK 170 >gi|292806522|gb|ADE42391.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQISDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 85/172 (49%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + + + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLK----AAQISDLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D ++S L++N+ Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSALDLNQ 170 >gi|122700605|emb|CAL87891.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINSNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 84/172 (48%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINSNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D ++S L++N+ Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSALDLNQ 170 >gi|292806466|gb|ADE42363.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERSYAFSSFGIPKSFNISVSHNRGISAL 158 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|163755505|ref|ZP_02162624.1| tRNA modification GTPase [Kordia algicida OT-1] gi|161324418|gb|EDP95748.1| tRNA modification GTPase [Kordia algicida OT-1] Length = 464 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 91/164 (55%), Gaps = 23/164 (14%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N L+ ++ A+V + G TRD + + +I+G+ F +DTAGI + K Sbjct: 224 VAIVGEPNVGKSTLLNALLNEERAIVSDIAGTTRDTIEDELVIDGISFRFIDTAGIRETK 283 Query: 65 NC--SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKK---------NIP 113 + SI Q +T I +A ++++L D A + D + + ++ P Sbjct: 284 DVVESIGIQ---KTFEKIEQAQVVIYLFD--ASLLSNDQEKSKVMLQEIHKLQNKFPQKP 338 Query: 114 IIIVSNKMDTRIAQ--RNFYEIYSLDFKEIVEISAEHDLGTSEL 155 I+IVSNK+D A +N +E F ++ +SA+ ++G +L Sbjct: 339 IVIVSNKIDKGDATFIKNTFE-----FDNLLLLSAKENIGVDDL 377 Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 33/104 (31%), Positives = 54/104 (51%), Gaps = 3/104 (2%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 I + +A+VG PNVGKSTL+N LL R + +G TRD++ DTA Sbjct: 218 IKNGIPVAIVGEPNVGKSTLLNALLNEERAIVSDIAGTTRDTIEDELVIDGISFRFIDTA 277 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 G+R+ + ES+ ++K+ + + + I L DA++ Q+ Sbjct: 278 GIRETKDVVESI---GIQKTFEKIEQAQVVIYLFDASLLSNDQE 318 >gi|122701433|emb|CAL88106.1| GTPase [Helicobacter pylori] gi|292806486|gb|ADE42373.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREIFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISTL 158 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ +F L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREIFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|310779271|ref|YP_003967604.1| GTP-binding protein Era [Ilyobacter polytropus DSM 2926] gi|309748594|gb|ADO83256.1| GTP-binding protein Era [Ilyobacter polytropus DSM 2926] Length = 298 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 54/177 (30%), Positives = 90/177 (50%), Gaps = 9/177 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTL N+LV +K+A+V + G TRD + G G + +DT GI K Sbjct: 6 IAVVGRPNVGKSTLTNKLVNEKVAIVSDKAGTTRDSIKGILNHGGNQYIFIDTPGIHKPK 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYD-HAITSFLRKKNIPIIIVSNKMDT 123 + + + M + ++ E +I+F++D I+ D + + L P I++ NK+D Sbjct: 66 HL-LGEHMTNVAVRSLKEVEVIMFVLDGSQEISTGDKYVMDRILEADKTPRILIVNKIDK 124 Query: 124 ------RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEM 174 ++ + E F IVE+SAE+ +G + I ++ +P +M Sbjct: 125 MSDEEIKVKKAEIEEKLGT-FDRIVELSAEYSIGMYRVIEAIDPFLEEGVMYYPEDM 180 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 40/126 (31%), Positives = 65/126 (51%), Gaps = 4/126 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IAVVGRPNVGKSTL N+L+ + ++G TRDS+ N + DT G+ KP Sbjct: 6 IAVVGRPNVGKSTLTNKLVNEKVAIVSDKAGTTRDSIKGILNHGGNQYIFIDTPGIHKPK 65 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHA-VVLALNKW 324 + L + +++S++ E + +LD + D ++D + +L +NK Sbjct: 66 HL---LGEHMTNVAVRSLKEVEVIMFVLDGSQEISTGDKYVMDRILEADKTPRILIVNKI 122 Query: 325 DMVSDK 330 D +SD+ Sbjct: 123 DKMSDE 128 >gi|122701711|emb|CAL88245.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREIFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISTL 158 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ +F L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREIFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122700895|emb|CAL88036.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYIVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISAL 158 Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 83/172 (48%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYIVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D ++S L +N+ Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLSALNLNQ 170 >gi|122700927|emb|CAL88051.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 52/162 (32%), Positives = 85/162 (52%), Gaps = 6/162 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDTLLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 K+D + Y S + IS H+ G S L + + Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLR 164 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDT 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|292806640|gb|ADE42450.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERTYAFSSFGIPKSFNISVSHNRGISALIDAIL 163 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 84/172 (48%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + RT A + I+ R L D ++S L +N+ Sbjct: 125 D--NDK----EKERTYAFSSFGIPKSFNISVSHNRGISALIDAILSALNLNQ 170 >gi|122701563|emb|CAL88171.1| GTPase [Helicobacter pylori] gi|122702643|emb|CAL88511.1| GTPase [Helicobacter pylori] gi|122702877|emb|CAL88628.1| GTPase [Helicobacter pylori] gi|242255820|gb|ACS88894.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 49/171 (28%), Positives = 82/171 (47%), Gaps = 12/171 (7%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEIN 375 D +DK + R A + I+ R L D ++S L +N Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSALNLN 169 >gi|18075559|emb|CAD11175.1| GTP-binding protein [Helicobacter pylori] gi|122702347|emb|CAL88364.1| GTPase [Helicobacter pylori] gi|122702819|emb|CAL88599.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGVPKSFNISVSHNRGISAL 158 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|71907658|ref|YP_285245.1| GTP-binding protein Era [Dechloromonas aromatica RCB] gi|71847279|gb|AAZ46775.1| Small GTP-binding protein domain:GTP-binding:GTP-binding protein Era [Dechloromonas aromatica RCB] Length = 294 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 55/145 (37%), Positives = 80/145 (55%), Gaps = 9/145 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL NRLV +K+++V TR R+ G + F VDT G Sbjct: 9 IAIVGRPNVGKSTLLNRLVGEKISIVSRKAQTTRHRITGILTNDDAQFVFVDTPGFQTKF 68 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + ++ + MN +N+ ++LFLI++ D A+ L K+ P+I+V NK D + Sbjct: 69 SNALNRAMNRGVTQTLNDVDVVLFLIEA-GRYDAKDKAVVRLL-PKDRPVILVVNKTD-Q 125 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHD 149 I R+ SL F + E+SA+HD Sbjct: 126 IKDRS-----SL-FPFLAEVSADHD 144 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 35/129 (27%), Positives = 67/129 (51%), Gaps = 4/129 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA+VGRPNVGKSTL+NRL+G + ++ TR ++ + DT G + + Sbjct: 9 IAIVGRPNVGKSTLLNRLVGEKISIVSRKAQTTRHRITGILTNDDAQFVFVDTPGFQ--T 66 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + + +L + + Q++ + + L++A ++ +D +V + V+L +NK D Sbjct: 67 KFSNALNRAMNRGVTQTLNDVDVVLFLIEAG-RYDAKDKAVV-RLLPKDRPVILVVNKTD 124 Query: 326 MVSDKLNLL 334 + D+ +L Sbjct: 125 QIKDRSSLF 133 >gi|159902748|ref|YP_001550092.1| tRNA modification GTPase TrmE [Prochlorococcus marinus str. MIT 9211] gi|159887924|gb|ABX08138.1| putative thiophen / furan oxidation protein [Prochlorococcus marinus str. MIT 9211] Length = 455 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 45/127 (35%), Positives = 73/127 (57%), Gaps = 10/127 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI---- 60 IA++G PNVGKS++ NRL K++ A+V PG TRD L + I+ G+ ++DTAGI Sbjct: 229 IALIGLPNVGKSSVLNRLSKRERAIVTALPGTTRDLLESEIILEGIPITLLDTAGIRSTN 288 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + + +AK N A+ A ++LF+ D G T D + + K+ +P +++ NK Sbjct: 289 DEVEKIGVAKSKN-----ALMTADIVLFIFDMSIGWTTADQDLFDQIPKQ-MPTLLIGNK 342 Query: 121 MDTRIAQ 127 D ++ Q Sbjct: 343 ADIKVQQ 349 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 51/185 (27%), Positives = 89/185 (48%), Gaps = 21/185 (11%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 L+IA++G PNVGKS+++NRL R + + G TRD + + PI + DTAG+R Sbjct: 227 LKIALIGLPNVGKSSVLNRLSKRERAIVTALPGTTRDLLESEIILEGIPITLLDTAGIRS 286 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 + + +E+ V KS ++ T + + + D +I + D + D + +++ NK Sbjct: 287 TN---DEVEKIGVAKSKNALMTADIVLFIFDMSIGWTTADQDLFDQIPKQMPTLLIG-NK 342 Query: 324 WDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRIT 383 D + + QD I S TG+G ++L+ ++L+I L +T Sbjct: 343 AD-----IKVQQDTNQAEI------------IFSALTGQGENNLIQALLKICGLHETHGI 385 Query: 384 TSYLN 388 LN Sbjct: 386 EIALN 390 >gi|122701333|emb|CAL88056.1| GTPase [Helicobacter pylori] gi|122702713|emb|CAL88546.1| GTPase [Helicobacter pylori] gi|292806502|gb|ADE42381.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 52/162 (32%), Positives = 85/162 (52%), Gaps = 6/162 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 K+D + Y S + IS H+ G S L + + Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISALIDAVLR 164 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|302670578|ref|YP_003830538.1| GTP-binding protein Era [Butyrivibrio proteoclasticus B316] gi|302395051|gb|ADL33956.1| GTP-binding protein Era [Butyrivibrio proteoclasticus B316] Length = 364 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 50/164 (30%), Positives = 86/164 (52%), Gaps = 7/164 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 I ++G PNVGKSTL N ++ +K+A+ N P TR+++ + +DT GI D K Sbjct: 10 ITLIGRPNVGKSTLMNHMIGQKIAITSNKPQTTRNKIMTVYTDDDCQMIFLDTPGIHDSK 69 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N + + M + + E ++L+L++ I + +I L+K P+I+V NK+DT Sbjct: 70 N-KLGEYMTKVAKSTLEEVDVVLWLVEPSTFIGAGEKSIIEELKKCRKPVILVINKIDT- 127 Query: 125 IAQRN---FYEIY--SLDFKEIVEISAEHDLGTSELHSVIFKIF 163 +++ N F Y +DF +V+++A EL I K+ Sbjct: 128 VSKDNLDKFENAYRQEMDFDRVVKVAALKGQNIDELMDAIKKLL 171 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 31/123 (25%), Positives = 59/123 (47%), Gaps = 3/123 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 I ++GRPNVGKSTL+N ++G +T ++ TR+ + + + + DT G+ Sbjct: 10 ITLIGRPNVGKSTLMNHMIGQKIAITSNKPQTTRNKIMTVYTDDDCQMIFLDTPGIHDSK 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 K K +++ V + + L++ + + I++ + V+L +NK D Sbjct: 70 NKLGEYMTKVAKSTLEEV---DVVLWLVEPSTFIGAGEKSIIEELKKCRKPVILVINKID 126 Query: 326 MVS 328 VS Sbjct: 127 TVS 129 >gi|292806434|gb|ADE42347.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISAL 158 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|292806410|gb|ADE42335.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERSYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 84/172 (48%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R+ A + I+ R L D ++S L +NK Sbjct: 125 D--NDK----EKERSYAFSSFGMPKSFNISVSHNRGISALIDAILSTLNLNK 170 >gi|122702751|emb|CAL88565.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 85/162 (52%), Gaps = 6/162 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 K+D + Y S + IS H+ G S L I + Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISTLIDSILR 164 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122702175|emb|CAL88278.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 84/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D+ + Y S + IS H+ G S L Sbjct: 123 KIDSDKEKERAYAFSSFGIPKSFNISVSHNRGISAL 158 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 41/126 (32%), Positives = 67/126 (53%), Gaps = 8/126 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 DMVSDK 330 D SDK Sbjct: 125 D--SDK 128 >gi|122700781|emb|CAL87979.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 52/162 (32%), Positives = 85/162 (52%), Gaps = 6/162 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREIFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 K+D + Y S + IS H+ G S L + + Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISALIDAVLR 164 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ +F L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREIFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122700773|emb|CAL87975.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 85/162 (52%), Gaps = 6/162 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLSRERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 K+D + Y S + IS H+ G S L I + Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISTLIDAILR 164 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLSRERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122700657|emb|CAL87917.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 49/171 (28%), Positives = 83/171 (48%), Gaps = 12/171 (7%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEIN 375 D +DK + R A + I+ R L D ++S L++N Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSALDLN 169 >gi|99905849|gb|ABF68619.1| YphC [Helicobacter pylori] gi|115605761|gb|ABJ15862.1| YphC [Helicobacter pylori] gi|122700601|emb|CAL87889.1| GTPase [Helicobacter pylori] gi|122700603|emb|CAL87890.1| GTPase [Helicobacter pylori] gi|122700611|emb|CAL87894.1| GTPase [Helicobacter pylori] gi|122700613|emb|CAL87895.1| GTPase [Helicobacter pylori] gi|122700617|emb|CAL87897.1| GTPase [Helicobacter pylori] gi|122702639|emb|CAL88509.1| GTPase [Helicobacter pylori] gi|122702857|emb|CAL88618.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 53/154 (34%), Positives = 82/154 (53%), Gaps = 6/154 (3%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA-- 66 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSNKM 121 K+ ++K++ A + LIL+++D K+ P D I F + K N +V NK+ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVINKI 124 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 D + Y S + IS H+ G S L Sbjct: 125 DNDKEKERSYAFSSFGIPKSFNISVSHNRGISAL 158 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|317452819|emb|CBL87845.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISALIDAIL 163 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|310287377|ref|YP_003938635.1| GTP-binding protein Era [Bifidobacterium bifidum S17] gi|309251313|gb|ADO53061.1| GTP-binding protein Era [Bifidobacterium bifidum S17] Length = 336 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 61/204 (29%), Positives = 100/204 (49%), Gaps = 24/204 (11%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTL N L+ K++A+ + P TR + G + +VDT GI + Sbjct: 31 IAVVGRPNVGKSTLINALIGKQVAIASSRPETTRKAIRGILTTDHAQLVLVDTPGIHRPR 90 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKK------------NI 112 + +++ND E ++++ I FL+ + I P D I S LR + Sbjct: 91 TL-LGQRLNDIVEESLSDIDAIAFLLPADQEIGPGDKRILSRLRTDFATKGEDGTFAWKV 149 Query: 113 PIIIVSNKMDTRIAQRNFYEIYSL----DFKEIVEISA-EHDLGTSELHSVIFKIFKQKY 167 P+I + K+D Q+ ++ + DF +IV +SA EHD E+ V+ Sbjct: 150 PLIAIVTKIDQLGRQQLIDKLIEINEFADFSDIVPVSALEHD-NLDEVRQVLI----DNT 204 Query: 168 PNHPLEMIENNKRNEESPKENITS 191 P P +M +++ +EE P++ I Sbjct: 205 PEGP-QMYPDDQVSEERPEDTIAE 227 Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 42/78 (53%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IAVVGRPNVGKSTLIN L+G + S+ TR ++ + + + DT G+ +P Sbjct: 31 IAVVGRPNVGKSTLINALIGKQVAIASSRPETTRKAIRGILTTDHAQLVLVDTPGIHRPR 90 Query: 266 RITESLEQKTVKKSMQSV 283 + V++S+ + Sbjct: 91 TLLGQRLNDIVEESLSDI 108 >gi|301633488|gb|ADK87042.1| tRNA modification GTPase TrmE [Mycoplasma pneumoniae FH] Length = 442 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 47/162 (29%), Positives = 84/162 (51%), Gaps = 5/162 (3%) Query: 193 GKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHP 252 G+ ++ + P +IA++G NVGKS+L+N LL ++ + + G TRD V + H Sbjct: 207 GQDQLQRLKDPFKIAIIGNTNVGKSSLLNALLDQDKAIVSAIKGSTRDIVEGDFALNGHF 266 Query: 253 IEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFN 312 ++I DTAG+R+ +LE+ ++K+ +++T I LLDA P + D +I+ + Sbjct: 267 VKILDTAGIRQHQ---SALEKAGIQKTFGAIKTANLVIYLLDARQP--EPDPKIIARLKK 321 Query: 313 TGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYIN 354 L NK D+V + + K I+ L + Y++ Sbjct: 322 LKKDFFLVHNKADLVQQSFQVSISAKQKQIQPLVDLLTQYLH 363 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 53/155 (34%), Positives = 82/155 (52%), Gaps = 8/155 (5%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + IAI+G NVGKS+L N L+ + A+V G TRD + G +NG I+DTAGI Sbjct: 218 FKIAIIGNTNVGKSSLLNALLDQDKAIVSAIKGSTRDIVEGDFALNGHFVKILDTAGIRQ 277 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 ++ ++ K +T AI A+L+++L+D++ D I + L+K +V NK D Sbjct: 278 HQS-ALEKAGIQKTFGAIKTANLVIYLLDARQ--PEPDPKIIARLKKLKKDFFLVHNKAD 334 Query: 123 TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHS 157 + Q++F S K+I + DL T LH Sbjct: 335 --LVQQSFQVSISAKQKQIQPLV---DLLTQYLHQ 364 >gi|122702605|emb|CAL88492.1| GTPase [Helicobacter pylori] gi|242255882|gb|ACS88925.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 83/172 (48%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D ++S L +N+ Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSTLNLNQ 170 >gi|122702843|emb|CAL88611.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERTYAFSSFGMPKSFNISVSHNRGISALVDAIL 163 Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 84/172 (48%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + RT A + I+ R L D +++ L +N+ Sbjct: 125 D--NDK----EKERTYAFSSFGMPKSFNISVSHNRGISALVDAILNALNLNQ 170 >gi|122702761|emb|CAL88570.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 85/162 (52%), Gaps = 6/162 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 K+D + Y S + IS H+ G S L I + Sbjct: 123 KIDNDKEKERAYMFSSFGIPKSFNISVSHNRGISALIDAILR 164 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|242255918|gb|ACS88943.1| GTPase [Helicobacter pylori] gi|242255920|gb|ACS88944.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINSNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISTLIDAIL 163 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINSNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122701351|emb|CAL88065.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISAL 158 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122701647|emb|CAL88213.1| GTPase [Helicobacter pylori] gi|122701655|emb|CAL88217.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERSYAFSSFGVPKSFNISVSHNRGISAL 158 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122700789|emb|CAL87983.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERTYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 84/172 (48%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + RT A + I+ R L D +++ L +N+ Sbjct: 125 D--NDK----EKERTYAFSSFGMPKSFNISVSHNRGISALIDAILNTLNLNQ 170 >gi|292490850|ref|YP_003526289.1| GTP-binding protein Era [Nitrosococcus halophilus Nc4] gi|291579445|gb|ADE13902.1| GTP-binding protein Era [Nitrosococcus halophilus Nc4] Length = 303 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 46/147 (31%), Positives = 78/147 (53%), Gaps = 6/147 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKS+L N ++ +K+++ P TR R+ G VDT G+ D + Sbjct: 15 VAIIGRPNVGKSSLLNCILGQKISITARRPQTTRHRILGIKTSPDAQAIYVDTPGLQDKE 74 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + +N + AI + LILF++++ T D I LR++ +PI++V NK+D Sbjct: 75 RRLMNRYLNRAADSAIEDVDLILFIVEAYR-FTEEDERILQRLRRRGVPIVLVLNKVDRV 133 Query: 125 IAQRNFYEIYS-----LDFKEIVEISA 146 ++ I ++F IV +SA Sbjct: 134 ADKKTLLPIMEQLSKKMEFAAIVPVSA 160 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 41/130 (31%), Positives = 66/130 (50%), Gaps = 5/130 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV-SISWNWKNHPIEIFDTAGMRKP 264 +A++GRPNVGKS+L+N +LG +T + TR + I + I + DT G++ Sbjct: 15 VAIIGRPNVGKSSLLNCILGQKISITARRPQTTRHRILGIKTSPDAQAIYV-DTPGLQDK 73 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 R L + + ++ S I+ + F ++D RI+ + G +VL LNK Sbjct: 74 ER---RLMNRYLNRAADSAIEDVDLILFIVEAYRFTEEDERILQRLRRRGVPIVLVLNKV 130 Query: 325 DMVSDKLNLL 334 D V+DK LL Sbjct: 131 DRVADKKTLL 140 >gi|122702259|emb|CAL88320.1| GTPase [Helicobacter pylori] gi|122702335|emb|CAL88358.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKAFNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGTPKSFNISVSHNRGISAL 158 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF T L +NK Sbjct: 70 LLSKEIKAFNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122702213|emb|CAL88297.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGAPKSFNISVSHNRGISALIDAIL 163 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122701603|emb|CAL88191.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERSYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122701545|emb|CAL88162.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|152995276|ref|YP_001340111.1| GTP-binding protein Era [Marinomonas sp. MWYL1] gi|150836200|gb|ABR70176.1| GTP-binding protein Era [Marinomonas sp. MWYL1] Length = 300 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 48/147 (32%), Positives = 79/147 (53%), Gaps = 6/147 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N ++ +K+++ P TRD++ G V VDT G+ G+ Sbjct: 12 IAIVGRPNVGKSTLLNHILGQKLSITSRKPQTTRDQILGVKTEEHVQAIYVDTPGLHLGE 71 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN A+ + ++LF+ID+ T D ++ ++ P+I+V NK+D Sbjct: 72 TKAINRIMNKTAAAALKDVDVVLFVIDADRW-TEEDESVLQKVKHARCPVILVVNKVDQL 130 Query: 125 IAQRNFYEIYS-----LDFKEIVEISA 146 + + + ++F +IV ISA Sbjct: 131 DQKEDLLPRLANLSDRMNFAQIVPISA 157 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/130 (30%), Positives = 71/130 (54%), Gaps = 5/130 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIF-DTAGMRKP 264 IA+VGRPNVGKSTL+N +LG +T + TRD + + + H I+ DT G+ Sbjct: 12 IAIVGRPNVGKSTLLNHILGQKLSITSRKPQTTRDQI-LGVKTEEHVQAIYVDTPGLHLG 70 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 T+++ + K + +++ + + ++DA + ++D ++ V + V+L +NK Sbjct: 71 E--TKAINRIMNKTAAAALKDVDVVLFVIDAD-RWTEEDESVLQKVKHARCPVILVVNKV 127 Query: 325 DMVSDKLNLL 334 D + K +LL Sbjct: 128 DQLDQKEDLL 137 >gi|86606766|ref|YP_475529.1| tRNA modification GTPase TrmE [Synechococcus sp. JA-3-3Ab] gi|123505609|sp|Q2JSU8|MNME_SYNJA RecName: Full=tRNA modification GTPase mnmE gi|86555308|gb|ABD00266.1| tRNA modification GTPase TrmE [Synechococcus sp. JA-3-3Ab] Length = 459 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 52/176 (29%), Positives = 89/176 (50%), Gaps = 18/176 (10%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKS+L N + A+V + PG TRD + Q ++ G+ ++DTAGI Sbjct: 228 VAIVGRPNVGKSSLLNAWSGQDRAIVTDLPGTTRDVVESQLVVRGIPVQLLDTAGI-RAT 286 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD-- 122 + + + ++++ A +++ +ID++AG T D AI + +R + P+I+V NK D Sbjct: 287 DDPVERLGVERSQRLAQTADVLVLVIDAQAGWTEADAAIYASIRHR--PLILVINKTDLA 344 Query: 123 ----TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEM 174 R+ Y + ++ A G EL + ++ Q P LE+ Sbjct: 345 PADKIRLPPEIAYRVPAV---------AAQGQGIPELEEALEQLVTQGRPQPNLEV 391 Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 41/131 (31%), Positives = 76/131 (58%), Gaps = 6/131 (4%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 +++A+VGRPNVGKS+L+N G +R + G TRD V + P+++ DTAG+R Sbjct: 226 VKVAIVGRPNVGKSSLLNAWSGQDRAIVTDLPGTTRDVVESQLVVRGIPVQLLDTAGIRA 285 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 + +E+ V++S + +T + ++++DA + + D I S+ + ++L +NK Sbjct: 286 ---TDDPVERLGVERSQRLAQTADVLVLVIDAQAGWTEADAAIYASIRH--RPLILVINK 340 Query: 324 WDMV-SDKLNL 333 D+ +DK+ L Sbjct: 341 TDLAPADKIRL 351 >gi|295693063|ref|YP_003601673.1| GTP-binding protein era homolog [Lactobacillus crispatus ST1] gi|295031169|emb|CBL50648.1| GTP-binding protein era homolog [Lactobacillus crispatus ST1] Length = 300 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 53/173 (30%), Positives = 93/173 (53%), Gaps = 14/173 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTL N LV +K+A+ N P TR+R+ G + + VDT GI Sbjct: 11 VALVGRPNVGKSTLMNYLVGQKVAITSNKPQTTRNRISGIYTSDEMQVVFVDTPGIFK-P 69 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + M+ + ++N+ L+LF+++ + + D I + L++ +P+++V NK+D Sbjct: 70 HSKLDDYMDKASVSSLNDVDLVLFMVEPEE-MGKGDQYIANLLKEVKVPVLLVINKVDDI 128 Query: 125 IAQR------NFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHP 171 + +++++ FKEI+ ISA +G +L K K+ P P Sbjct: 129 HPNKLLPIMDSYHKLEG--FKEILPISATQGIGIEDL----LKTIKEYLPVGP 175 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 49/169 (28%), Positives = 81/169 (47%), Gaps = 11/169 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VGRPNVGKSTL+N L+G +T ++ TR+ +S + + DT G+ KP Sbjct: 11 VALVGRPNVGKSTLMNYLVGQKVAITSNKPQTTRNRISGIYTSDEMQVVFVDTPGIFKPH 70 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L+ K S+ S+ + + +++ K D I + + V+L +NK D Sbjct: 71 ---SKLDDYMDKASVSSLNDVDLVLFMVEPE-EMGKGDQYIANLLKEVKVPVLLVINKVD 126 Query: 326 MVS-DKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 + +KL + D K G I IS G G++DL+ ++ E Sbjct: 127 DIHPNKLLPIMDSYHKL------EGFKEILPISATQGIGIEDLLKTIKE 169 >gi|242255874|gb|ACS88921.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 52/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + +S H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMSKSFNVSVSHNRGISALIDAIL 163 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122702647|emb|CAL88513.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERSYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/171 (28%), Positives = 84/171 (49%), Gaps = 12/171 (7%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEIN 375 D +DK + R+ A + I+ R L D ++S L++N Sbjct: 125 D--NDK----EKERSYAFSSFGMPKSFNISVSHNRGISALIDAILSALDLN 169 >gi|122700705|emb|CAL87941.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|18075585|emb|CAD11188.1| GTP-binding protein [Helicobacter pylori] gi|122700727|emb|CAL87952.1| GTPase [Helicobacter pylori] gi|122700751|emb|CAL87964.1| GTPase [Helicobacter pylori] gi|122700921|emb|CAL88049.1| GTPase [Helicobacter pylori] gi|122702487|emb|CAL88434.1| GTPase [Helicobacter pylori] gi|122702583|emb|CAL88481.1| GTPase [Helicobacter pylori] gi|292806536|gb|ADE42398.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|317453525|emb|CBL87872.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 52/162 (32%), Positives = 85/162 (52%), Gaps = 6/162 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 K+D + Y S + IS H+ G S L + + Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISALIDAVLR 164 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|313140093|ref|ZP_07802286.1| GTP-binding protein Era [Bifidobacterium bifidum NCIMB 41171] gi|313132603|gb|EFR50220.1| GTP-binding protein Era [Bifidobacterium bifidum NCIMB 41171] Length = 344 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 61/204 (29%), Positives = 100/204 (49%), Gaps = 24/204 (11%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTL N L+ K++A+ + P TR + G + +VDT GI + Sbjct: 39 IAVVGRPNVGKSTLINALIGKQVAIASSRPETTRKAIRGILTTDHAQLVLVDTPGIHRPR 98 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKK------------NI 112 + +++ND E ++++ I FL+ + I P D I S LR + Sbjct: 99 TL-LGQRLNDIVEESLSDIDAIAFLLPADQEIGPGDKRILSRLRTDFATKGEDGTFAWKV 157 Query: 113 PIIIVSNKMDTRIAQRNFYEIYSL----DFKEIVEISA-EHDLGTSELHSVIFKIFKQKY 167 P+I + K+D Q+ ++ + DF +IV +SA EHD E+ V+ Sbjct: 158 PLIAIVTKIDQLGRQQLIDKLIEINEFADFSDIVPVSALEHD-NLDEVRQVLI----DNT 212 Query: 168 PNHPLEMIENNKRNEESPKENITS 191 P P +M +++ +EE P++ I Sbjct: 213 PEGP-QMYPDDQVSEERPEDTIAE 235 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 35/59 (59%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP 264 IAVVGRPNVGKSTLIN L+G + S+ TR ++ + + + DT G+ +P Sbjct: 39 IAVVGRPNVGKSTLINALIGKQVAIASSRPETTRKAIRGILTTDHAQLVLVDTPGIHRP 97 >gi|312794739|ref|YP_004027662.1| tRNA modification gtpase trme [Caldicellulosiruptor kristjanssonii 177R1B] gi|312181879|gb|ADQ42049.1| tRNA modification GTPase TrmE [Caldicellulosiruptor kristjanssonii 177R1B] Length = 455 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 56/150 (37%), Positives = 87/150 (58%), Gaps = 10/150 (6%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 IYT+ IVG PNVGKS+L NRL+K++ A+V + PG TRD + I G+ + DTAG+ Sbjct: 221 IYTV-IVGRPNVGKSSLLNRLLKEEKAIVTDIPGTTRDVIEEVLDIEGIPIILADTAGVR 279 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 ++ + K +T +I A L+LF+I+S +GI D I ++ K I++ NK+ Sbjct: 280 KTEDV-VEKIGVKKTLESIERADLVLFMIES-SGILQEDLEIFETIKDKR--FIVLVNKI 335 Query: 122 D--TRIAQRNFYEIYSLDFKEIVEISAEHD 149 D +++ + I+ KE + IS EHD Sbjct: 336 DKEVKVSHEDIKRIFG---KEGIFISVEHD 362 Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 40/128 (31%), Positives = 72/128 (56%), Gaps = 6/128 (4%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K I + +VGRPNVGKS+L+NRLL + + G TRD + + + PI + D Sbjct: 215 KAIKSGIYTVIVGRPNVGKSSLLNRLLKEEKAIVTDIPGTTRDVIEEVLDIEGIPIILAD 274 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+RK + E + VKK+++S+ + + +++++ ++DL I +++ + V Sbjct: 275 TAGVRKTEDVVEKI---GVKKTLESIERADLVLFMIESS-GILQEDLEIFETIKDKRFIV 330 Query: 318 VLALNKWD 325 + +NK D Sbjct: 331 L--VNKID 336 >gi|221068687|ref|ZP_03544792.1| GTP-binding protein Era [Comamonas testosteroni KF-1] gi|220713710|gb|EED69078.1| GTP-binding protein Era [Comamonas testosteroni KF-1] Length = 367 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 55/169 (32%), Positives = 86/169 (50%), Gaps = 11/169 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N LV +K+++ TR R+ G + F VDT G Sbjct: 77 IAIVGKPNVGKSTLMNALVGQKISITSRKAQTTRHRITGIRTKDETQFVFVDTPGFQTKH 136 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 + ++ K +N AI + LILF++++ T D + S K IP ++++NK+DT Sbjct: 137 STALNKSLNKTVMGAIGDVDLILFVVEA-GSFTLADAKVLSLF-KPGIPTLLIANKLDTV 194 Query: 124 -RIAQ-----RNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQK 166 R A+ R+ E + F E V +SA++ ++ + K Q+ Sbjct: 195 GRRAEIAPWLRDMQERHP--FAEFVPMSAKNKKDIERMYGICAKYLPQQ 241 Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust. Identities = 37/133 (27%), Positives = 66/133 (49%), Gaps = 4/133 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA+VG+PNVGKSTL+N L+G +T ++ TR ++ DT G + + Sbjct: 77 IAIVGKPNVGKSTLMNALVGQKISITSRKAQTTRHRITGIRTKDETQFVFVDTPGFQ--T 134 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + + +L + K M ++ + + +++A F D +++ S+F G +L NK D Sbjct: 135 KHSTALNKSLNKTVMGAIGDVDLILFVVEAG-SFTLADAKVL-SLFKPGIPTLLIANKLD 192 Query: 326 MVSDKLNLLQDLR 338 V + + LR Sbjct: 193 TVGRRAEIAPWLR 205 >gi|253576082|ref|ZP_04853414.1| GTP-binding protein Era [Paenibacillus sp. oral taxon 786 str. D14] gi|251844425|gb|EES72441.1| GTP-binding protein Era [Paenibacillus sp. oral taxon 786 str. D14] Length = 300 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 51/147 (34%), Positives = 77/147 (52%), Gaps = 7/147 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N ++ +K+A++ + P TR++++G + +DT GI + Sbjct: 11 VAIVGRPNVGKSTLMNHIIGQKIAIMSDKPQTTRNKIHGVYTSEEMQIVFLDTPGIHK-R 69 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + MN + E +LFL+D+ G+ D I L+ P+I+V NK+D R Sbjct: 70 QSKLGDYMNTTALNTLGEVEAVLFLVDAAEGLGGGDRFIIERLKDVRTPVILVLNKID-R 128 Query: 125 IAQRNFY---EIYS--LDFKEIVEISA 146 + E YS F EIV ISA Sbjct: 129 VEPEQLLPLIEEYSKLYPFSEIVPISA 155 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 35/124 (28%), Positives = 62/124 (50%), Gaps = 5/124 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK-P 264 +A+VGRPNVGKSTL+N ++G + + TR+ + + + I DT G+ K Sbjct: 11 VAIVGRPNVGKSTLMNHIIGQKIAIMSDKPQTTRNKIHGVYTSEEMQIVFLDTPGIHKRQ 70 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 S++ + + ++ ++ E + L+DA D I++ + + V+L LNK Sbjct: 71 SKLGDYMN----TTALNTLGEVEAVLFLVDAAEGLGGGDRFIIERLKDVRTPVILVLNKI 126 Query: 325 DMVS 328 D V Sbjct: 127 DRVE 130 >gi|122702345|emb|CAL88363.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREIFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISTL 158 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ +F L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREIFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122700807|emb|CAL87992.1| GTPase [Helicobacter pylori] gi|122700837|emb|CAL88007.1| GTPase [Helicobacter pylori] gi|122702163|emb|CAL88272.1| GTPase [Helicobacter pylori] gi|122702469|emb|CAL88425.1| GTPase [Helicobacter pylori] gi|242255966|gb|ACS88967.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERSYAFSSFGIPKSFNISVSHNRGISAL 158 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|4467663|emb|CAB37783.1| GTP-binding protein homologue [Helicobacter pylori] gi|4467673|emb|CAB37788.1| GTP-binding protein homologue [Helicobacter pylori] gi|122700741|emb|CAL87959.1| GTPase [Helicobacter pylori] gi|292806526|gb|ADE42393.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806604|gb|ADE42432.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISAL 158 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|292806490|gb|ADE42375.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 52/164 (31%), Positives = 86/164 (52%), Gaps = 6/164 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL++++ K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVNGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 K+D + Y S + IS H+ G S L I ++ Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAILRVL 166 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 83/172 (48%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + +++ +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVNGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D ++ VL +NK Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILRVLNLNK 170 >gi|292806428|gb|ADE42344.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERSYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122702379|emb|CAL88380.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREIFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGVPKSFNISVSHNRGISAL 158 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ +F L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREIFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|120609885|ref|YP_969563.1| GTP-binding protein Era [Acidovorax citrulli AAC00-1] gi|120588349|gb|ABM31789.1| GTP-binding protein Era [Acidovorax citrulli AAC00-1] Length = 344 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 58/181 (32%), Positives = 88/181 (48%), Gaps = 15/181 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N LV +K+++ TR R+ G + F VDT G Sbjct: 54 IAIVGKPNVGKSTLMNALVGQKISITSRKAQTTRHRITGIRTMGAAQFVFVDTPGFQTKH 113 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 + ++ K +N AI + LILF++++ T D + S K IP ++++NK+DT Sbjct: 114 STALNKSLNKTVMGAIGDVDLILFVVEA-GSFTLADAKVLSLF-KPGIPTLLIANKLDTV 171 Query: 124 -RIAQ-----RNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 R A+ + E + F E V +SA++ L F I ++ P P E+ Sbjct: 172 HRRAEIAPWLKGMQERHP--FAEFVPMSAKNKGDIERL----FGICEKYLPEQPWWYAED 225 Query: 178 N 178 Sbjct: 226 E 226 Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust. Identities = 39/147 (26%), Positives = 68/147 (46%), Gaps = 7/147 (4%) Query: 190 TSEGKSSVKNISKPLR---IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISW 246 T G P R IA+VG+PNVGKSTL+N L+G +T ++ TR ++ Sbjct: 35 TGSGAQEAPVAQGPQRCGLIAIVGKPNVGKSTLMNALVGQKISITSRKAQTTRHRITGIR 94 Query: 247 NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRI 306 DT G + ++ + +L + K M ++ + + +++A F D ++ Sbjct: 95 TMGAAQFVFVDTPGFQ--TKHSTALNKSLNKTVMGAIGDVDLILFVVEAG-SFTLADAKV 151 Query: 307 VDSVFNTGHAVVLALNKWDMVSDKLNL 333 + S+F G +L NK D V + + Sbjct: 152 L-SLFKPGIPTLLIANKLDTVHRRAEI 177 >gi|18075557|emb|CAD11174.1| GTP-binding protein [Helicobacter pylori] gi|122700659|emb|CAL87918.1| GTPase [Helicobacter pylori] gi|122700771|emb|CAL87974.1| GTPase [Helicobacter pylori] gi|122700915|emb|CAL88046.1| GTPase [Helicobacter pylori] gi|122701325|emb|CAL88052.1| GTPase [Helicobacter pylori] gi|122701383|emb|CAL88081.1| GTPase [Helicobacter pylori] gi|122701549|emb|CAL88164.1| GTPase [Helicobacter pylori] gi|122701561|emb|CAL88170.1| GTPase [Helicobacter pylori] gi|122701705|emb|CAL88242.1| GTPase [Helicobacter pylori] gi|122702473|emb|CAL88427.1| GTPase [Helicobacter pylori] gi|122702559|emb|CAL88469.1| GTPase [Helicobacter pylori] gi|122702651|emb|CAL88515.1| GTPase [Helicobacter pylori] gi|122702659|emb|CAL88519.1| GTPase [Helicobacter pylori] gi|122702723|emb|CAL88551.1| GTPase [Helicobacter pylori] gi|122702775|emb|CAL88577.1| GTPase [Helicobacter pylori] gi|122702817|emb|CAL88598.1| GTPase [Helicobacter pylori] gi|122702861|emb|CAL88620.1| GTPase [Helicobacter pylori] gi|242255846|gb|ACS88907.1| GTPase [Helicobacter pylori] gi|242255942|gb|ACS88955.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|13507747|ref|NP_109696.1| tRNA modification GTPase TrmE [Mycoplasma pneumoniae M129] gi|2495119|sp|P75104|MNME_MYCPN RecName: Full=tRNA modification GTPase mnmE gi|1673806|gb|AAB95794.1| thiophene and furan oxidation protein [Mycoplasma pneumoniae M129] Length = 442 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 47/162 (29%), Positives = 84/162 (51%), Gaps = 5/162 (3%) Query: 193 GKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHP 252 G+ ++ + P +IA++G NVGKS+L+N LL ++ + + G TRD V + H Sbjct: 207 GQDQLQRLKDPFKIAIIGNTNVGKSSLLNALLDQDKAIVSAIKGSTRDIVEGDFALNGHF 266 Query: 253 IEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFN 312 ++I DTAG+R+ +LE+ ++K+ +++T I LLDA P + D +I+ + Sbjct: 267 VKILDTAGIRQHQ---SALEKAGIQKTFGAIKTANLVIYLLDARQP--EPDPKIIARLKK 321 Query: 313 TGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYIN 354 L NK D+V + + K I+ L + Y++ Sbjct: 322 LKKDFFLVHNKADLVQQSFQVSISAKQKQIQPLVDLLTQYLH 363 Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 53/155 (34%), Positives = 82/155 (52%), Gaps = 8/155 (5%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + IAI+G NVGKS+L N L+ + A+V G TRD + G +NG I+DTAGI Sbjct: 218 FKIAIIGNTNVGKSSLLNALLDQDKAIVSAIKGSTRDIVEGDFALNGHFVKILDTAGIRQ 277 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 ++ ++ K +T AI A+L+++L+D++ D I + L+K +V NK D Sbjct: 278 HQS-ALEKAGIQKTFGAIKTANLVIYLLDARQ--PEPDPKIIARLKKLKKDFFLVHNKAD 334 Query: 123 TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHS 157 + Q++F S K+I + DL T LH Sbjct: 335 --LVQQSFQVSISAKQKQIQPLV---DLLTQYLHQ 364 >gi|264677119|ref|YP_003277025.1| GTP-binding protein Era [Comamonas testosteroni CNB-2] gi|299530660|ref|ZP_07044075.1| GTP-binding protein Era [Comamonas testosteroni S44] gi|262207631|gb|ACY31729.1| GTP-binding protein Era [Comamonas testosteroni CNB-2] gi|298721176|gb|EFI62118.1| GTP-binding protein Era [Comamonas testosteroni S44] Length = 367 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 55/169 (32%), Positives = 86/169 (50%), Gaps = 11/169 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N LV +K+++ TR R+ G + F VDT G Sbjct: 77 IAIVGKPNVGKSTLMNALVGQKISITSRKAQTTRHRITGIRTKDETQFVFVDTPGFQTKH 136 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 + ++ K +N AI + LILF++++ T D + S K IP ++++NK+DT Sbjct: 137 STALNKSLNKTVMGAIGDVDLILFVVEA-GSFTLADAKVLSLF-KPGIPTLLIANKLDTV 194 Query: 124 -RIAQ-----RNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQK 166 R A+ R+ E + F E V +SA++ ++ + K Q+ Sbjct: 195 GRRAEIAPWLRDMQERHP--FAEFVPMSAKNKKDIERMYGICAKYLPQQ 241 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 37/133 (27%), Positives = 66/133 (49%), Gaps = 4/133 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA+VG+PNVGKSTL+N L+G +T ++ TR ++ DT G + + Sbjct: 77 IAIVGKPNVGKSTLMNALVGQKISITSRKAQTTRHRITGIRTKDETQFVFVDTPGFQ--T 134 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + + +L + K M ++ + + +++A F D +++ S+F G +L NK D Sbjct: 135 KHSTALNKSLNKTVMGAIGDVDLILFVVEAG-SFTLADAKVL-SLFKPGIPTLLIANKLD 192 Query: 326 MVSDKLNLLQDLR 338 V + + LR Sbjct: 193 TVGRRAEIAPWLR 205 >gi|242255894|gb|ACS88931.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKEQSYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122701369|emb|CAL88074.1| GTPase [Helicobacter pylori] gi|122701407|emb|CAL88093.1| GTPase [Helicobacter pylori] gi|122701441|emb|CAL88110.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 84/172 (48%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D ++S L++N+ Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSTLDLNQ 170 >gi|122702251|emb|CAL88316.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGVPKSFNISVSHNRGISTL 158 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|312871302|ref|ZP_07731400.1| tRNA modification GTPase TrmE [Lactobacillus iners LEAF 3008A-a] gi|312874855|ref|ZP_07734874.1| tRNA modification GTPase TrmE [Lactobacillus iners LEAF 2053A-b] gi|311089600|gb|EFQ48025.1| tRNA modification GTPase TrmE [Lactobacillus iners LEAF 2053A-b] gi|311093316|gb|EFQ51662.1| tRNA modification GTPase TrmE [Lactobacillus iners LEAF 3008A-a] Length = 461 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 58/176 (32%), Positives = 90/176 (51%), Gaps = 4/176 (2%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AIVG PNVGKS+L N L K++ A+V N G TRD L + G++ ++DTAGI + Sbjct: 228 AIVGRPNVGKSSLLNYLSKEEKAIVTNIAGTTRDTLEEYVSLKGILLKLIDTAGIRQTDD 287 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 + K ++++ AI E+ L+L LI+S +T D + + K II+ NK D ++ Sbjct: 288 I-VEKIGVERSKRAITESDLVLLLINSSEELTEEDQKLLELTQDK--KRIIILNKAD-QV 343 Query: 126 AQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 A+ +I + IV IS L I +F Q + E++ N+R Sbjct: 344 AKITKKDIQKITDSPIVTISVLKKKNMIGLEEAIKSLFLQGITDSKSEVMVTNQRQ 399 Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 36/131 (27%), Positives = 74/131 (56%), Gaps = 5/131 (3%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + L A+VGRPNVGKS+L+N L + + + +G TRD++ + K +++ D Sbjct: 219 KVVRSGLATAIVGRPNVGKSSLLNYLSKEEKAIVTNIAGTTRDTLEEYVSLKGILLKLID 278 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ I E + V++S +++ + ++L++++ ++D ++++ Sbjct: 279 TAGIRQTDDIVEKI---GVERSKRAITESDLVLLLINSSEELTEEDQKLLE--LTQDKKR 333 Query: 318 VLALNKWDMVS 328 ++ LNK D V+ Sbjct: 334 IIILNKADQVA 344 >gi|292806690|gb|ADE42475.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 51/162 (31%), Positives = 85/162 (52%), Gaps = 6/162 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ +++++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSQEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 K+D + Y S + IS H+ G S L + + Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLR 164 Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSQEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|224282934|ref|ZP_03646256.1| GTP-binding protein Era [Bifidobacterium bifidum NCIMB 41171] Length = 336 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 61/204 (29%), Positives = 100/204 (49%), Gaps = 24/204 (11%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTL N L+ K++A+ + P TR + G + +VDT GI + Sbjct: 31 IAVVGRPNVGKSTLINALIGKQVAIASSRPETTRKAIRGILTTDHAQLVLVDTPGIHRPR 90 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKK------------NI 112 + +++ND E ++++ I FL+ + I P D I S LR + Sbjct: 91 TL-LGQRLNDIVEESLSDIDAIAFLLPADQEIGPGDKRILSRLRTDFATKGEDGTFAWKV 149 Query: 113 PIIIVSNKMDTRIAQRNFYEIYSL----DFKEIVEISA-EHDLGTSELHSVIFKIFKQKY 167 P+I + K+D Q+ ++ + DF +IV +SA EHD E+ V+ Sbjct: 150 PLIAIVTKIDQLGRQQLIDKLIEINEFADFSDIVPVSALEHD-NLDEVRQVLI----DNT 204 Query: 168 PNHPLEMIENNKRNEESPKENITS 191 P P +M +++ +EE P++ I Sbjct: 205 PEGP-QMYPDDQVSEERPEDTIAE 227 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 42/78 (53%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IAVVGRPNVGKSTLIN L+G + S+ TR ++ + + + DT G+ +P Sbjct: 31 IAVVGRPNVGKSTLINALIGKQVAIASSRPETTRKAIRGILTTDHAQLVLVDTPGIHRPR 90 Query: 266 RITESLEQKTVKKSMQSV 283 + V++S+ + Sbjct: 91 TLLGQRLNDIVEESLSDI 108 >gi|122702507|emb|CAL88444.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKSLNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISAL 158 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKSLNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122701335|emb|CAL88057.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 52/162 (32%), Positives = 85/162 (52%), Gaps = 6/162 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL++++ K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVNGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 K+D + Y S + IS H+ G S L I + Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISALIDAILR 164 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 62/120 (51%), Gaps = 4/120 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +++ ++ +K + S V+ +IP + +DL++ VF T L +NK D Sbjct: 70 LLSKEIKALNLKAAQMSDLIL---YVVNGKSIPSD-EDLKLFREVFKTNPNCFLVINKID 125 >gi|122701683|emb|CAL88231.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISAL 158 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122700919|emb|CAL88048.1| GTPase [Helicobacter pylori] gi|122701631|emb|CAL88205.1| GTPase [Helicobacter pylori] gi|122702527|emb|CAL88453.1| GTPase [Helicobacter pylori] gi|292806412|gb|ADE42336.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISAL 158 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122700677|emb|CAL87927.1| GTPase [Helicobacter pylori] gi|122701411|emb|CAL88095.1| GTPase [Helicobacter pylori] gi|122701429|emb|CAL88104.1| GTPase [Helicobacter pylori] gi|122701497|emb|CAL88138.1| GTPase [Helicobacter pylori] gi|122701601|emb|CAL88190.1| GTPase [Helicobacter pylori] gi|122702695|emb|CAL88537.1| GTPase [Helicobacter pylori] gi|122702873|emb|CAL88626.1| GTPase [Helicobacter pylori] gi|242255826|gb|ACS88897.1| GTPase [Helicobacter pylori] gi|242255930|gb|ACS88949.1| GTPase [Helicobacter pylori] gi|292806510|gb|ADE42385.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806520|gb|ADE42390.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806586|gb|ADE42423.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806646|gb|ADE42453.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 83/172 (48%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D ++S L +N+ Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSALNLNQ 170 >gi|93004278|gb|ABE97059.1| YphC [Helicobacter pylori] gi|99905861|gb|ABF68625.1| YphC [Helicobacter pylori] gi|122702715|emb|CAL88547.1| GTPase [Helicobacter pylori] gi|242255892|gb|ACS88930.1| GTPase [Helicobacter pylori] gi|242255896|gb|ACS88932.1| GTPase [Helicobacter pylori] gi|242255934|gb|ACS88951.1| GTPase [Helicobacter pylori] gi|317453531|emb|CBL87875.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 84/172 (48%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D ++S L++N+ Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSALDLNQ 170 >gi|325956928|ref|YP_004292340.1| GTPase Era [Lactobacillus acidophilus 30SC] gi|325333493|gb|ADZ07401.1| GTPase Era [Lactobacillus acidophilus 30SC] Length = 301 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 89/162 (54%), Gaps = 8/162 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A++G PNVGKSTL N LV +K+A+ N P TR+R+ G + + VDT GI Sbjct: 11 VALIGRPNVGKSTLMNYLVGQKVAITSNKPQTTRNRISGIYTSDDMQIVFVDTPGIFK-P 69 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + M+ + ++N+ L+LF+++ + I D I L++ +P+ +V NK+D + Sbjct: 70 HSKLDDYMDKASLSSLNDVDLVLFMVEPEK-IGKGDQYIADLLKEVKVPVFLVINKVD-Q 127 Query: 125 IAQRNFYEI----YSLD-FKEIVEISAEHDLGTSELHSVIFK 161 I I + L+ FKEI+ ISA +G +L + + K Sbjct: 128 IHPNKLLPIMDSYHKLEGFKEILPISATQGIGIEDLLATLNK 169 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 84/168 (50%), Gaps = 13/168 (7%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP- 264 +A++GRPNVGKSTL+N L+G +T ++ TR+ +S + + I DT G+ KP Sbjct: 11 VALIGRPNVGKSTLMNYLVGQKVAITSNKPQTTRNRISGIYTSDDMQIVFVDTPGIFKPH 70 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 S++ + ++ K S+ S+ + + +++ K D I D + V L +NK Sbjct: 71 SKLDDYMD----KASLSSLNDVDLVLFMVEPE-KIGKGDQYIADLLKEVKVPVFLVINKV 125 Query: 325 DMVS-DKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSV 371 D + +KL + D K G I IS G G++DL+ ++ Sbjct: 126 DQIHPNKLLPIMDSYHKL------EGFKEILPISATQGIGIEDLLATL 167 >gi|291456693|ref|ZP_06596083.1| GTP-binding protein Era [Bifidobacterium breve DSM 20213] gi|291381970|gb|EFE89488.1| GTP-binding protein Era [Bifidobacterium breve DSM 20213] Length = 335 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 59/204 (28%), Positives = 103/204 (50%), Gaps = 24/204 (11%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTL N L+ K++A+ + P TR + G + +VDT GI + Sbjct: 30 VAVVGRPNVGKSTLINALIGKQIAIASSRPETTRKAIRGILTTDNAQLVLVDTPGIHRPR 89 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKK------------NI 112 + +++ND E ++++ ++ FL+ + I P D I S LR I Sbjct: 90 TL-LGQRLNDVVEESLSDVDVVAFLLPADQEIGPGDKRILSRLRTDFATKREDGSFAWRI 148 Query: 113 PIIIVSNKMDTRIAQRNFYEIYSL----DFKEIVEISA-EHDLGTSELHSVIFKIFKQKY 167 P+I + K+D Q+ ++ + DF +IV +SA +HD +E+ +V+ Sbjct: 149 PLIAIVTKIDELGRQQLINKLIEINEFADFADIVPVSALKHD-NLAEVRNVLI----DHT 203 Query: 168 PNHPLEMIENNKRNEESPKENITS 191 P P +M +++ +EE P++ I Sbjct: 204 PEGP-QMYPDDQISEERPEDTIAE 226 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 34/103 (33%), Positives = 54/103 (52%), Gaps = 7/103 (6%) Query: 188 NITSEGKSSVKNISK----PLR---IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 NI+++G ++ + S P R +AVVGRPNVGKSTLIN L+G + S+ TR Sbjct: 5 NISNDGDAAAASESVRQEVPYRSGFVAVVGRPNVGKSTLINALIGKQIAIASSRPETTRK 64 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSV 283 ++ N + + DT G+ +P + V++S+ V Sbjct: 65 AIRGILTTDNAQLVLVDTPGIHRPRTLLGQRLNDVVEESLSDV 107 >gi|122701389|emb|CAL88084.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISTLIDAIL 163 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 83/172 (48%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D ++S L +NK Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISTLIDAILSALNLNK 170 >gi|122700775|emb|CAL87976.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGVPKSFNISVSHNRGISAL 158 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|295094022|emb|CBK83113.1| GTP-binding protein Era [Coprococcus sp. ART55/1] Length = 299 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 75/252 (29%), Positives = 121/252 (48%), Gaps = 32/252 (12%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIING----VIFNIVDTAGI 60 ++I+G PNVGKSTL NRL+ +K+A+ N TR+R+ Q + +IF +DT GI Sbjct: 10 VSIIGRPNVGKSTLMNRLIGQKIAITSNKAQTTRNRI--QTVYTSDKGQIIF--LDTPGI 65 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 KN + + M E ++E ++L+++++ I + I L+ PII+V NK Sbjct: 66 NRAKN-KLGEYMLKVAESTLDEVDVVLWIVEATTFIGAGERYIIEQLQHVKTPIIVVVNK 124 Query: 121 MDTRIAQRNFYEIY----SLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIE 176 +D + F I + DF EIV +SA T EL I K P P E Sbjct: 125 IDNVEESKVFEAINTYKDACDFAEIVPVSALKGKNTDELIDTIMKYL----PYGPQYYDE 180 Query: 177 NNKRNEESPKENITSE--GKSSVKNISK--PLRIAVV-----GRPNVG----KSTLINRL 223 + ++ P+ I +E + +++ + K P IAVV RP+ G +T+I Sbjct: 181 DTITDQ--PERQIVAELIREQALRQLDKEVPHGIAVVIDSMKERPDGGLIDIDATIICER 238 Query: 224 LGYNRLLTGSQS 235 + ++ G Q Sbjct: 239 DSHKGIIIGKQG 250 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 31/124 (25%), Positives = 66/124 (53%), Gaps = 3/124 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 ++++GRPNVGKSTL+NRL+G +T +++ TR+ + + I DT G+ + Sbjct: 10 VSIIGRPNVGKSTLMNRLIGQKIAITSNKAQTTRNRIQTVYTSDKGQIIFLDTPGI---N 66 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 R L + +K + ++ + + +++AT + I++ + + +++ +NK D Sbjct: 67 RAKNKLGEYMLKVAESTLDEVDVVLWIVEATTFIGAGERYIIEQLQHVKTPIIVVVNKID 126 Query: 326 MVSD 329 V + Sbjct: 127 NVEE 130 >gi|227508120|ref|ZP_03938169.1| tRNA modification GTPase TrmE [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227511145|ref|ZP_03941194.1| tRNA modification GTPase TrmE [Lactobacillus buchneri ATCC 11577] gi|227085627|gb|EEI20939.1| tRNA modification GTPase TrmE [Lactobacillus buchneri ATCC 11577] gi|227192349|gb|EEI72416.1| tRNA modification GTPase TrmE [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 464 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 65/203 (32%), Positives = 106/203 (52%), Gaps = 15/203 (7%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 +I+G PNVGKS+L N L+ + A+V + PG TRD L A ++GV ++DTAGI D N Sbjct: 229 SIIGRPNVGKSSLLNHLLHEDKAIVTDVPGTTRDVLEEYANVSGVPLKLIDTAGIRD-TN 287 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 + K D++ AIN A L+L ++++ +T D + KK I+V NK D I Sbjct: 288 DKVEKIGVDRSRKAINSADLVLLVLNASEPLTEEDRQLIEATNKKK--RIVVLNKTDLPI 345 Query: 126 AQRNFYEIYSLDFKEIV----EISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 + N EI L + + I A+ G EL S +F F + + +++ N R+ Sbjct: 346 -KLNLSEIKRLTKAQNIISTSAIKADGLKGLEELISTMF--FNEGIASSQNDVVVTNARH 402 Query: 182 EESPKENITSEGKSSVKNISKPL 204 + ++ KS+++++ K L Sbjct: 403 -----IGLLNQAKSALEDVLKGL 420 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 86/155 (55%), Gaps = 6/155 (3%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 L +++GRPNVGKS+L+N LL ++ + G TRD + N P+++ DTAG+R Sbjct: 226 LATSIIGRPNVGKSSLLNHLLHEDKAIVTDVPGTTRDVLEEYANVSGVPLKLIDTAGIRD 285 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 + + +E+ V +S +++ + + +++L+A+ P ++D +++++ VV LNK Sbjct: 286 TN---DKVEKIGVDRSRKAINSADLVLLVLNASEPLTEEDRQLIEATNKKKRIVV--LNK 340 Query: 324 WDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 D+ KLNL + R +N+ I + + G Sbjct: 341 TDL-PIKLNLSEIKRLTKAQNIISTSAIKADGLKG 374 >gi|122702539|emb|CAL88459.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 52/162 (32%), Positives = 85/162 (52%), Gaps = 6/162 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 K+D + Y S + IS H+ G S L + + Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISALIDAVLR 164 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|320094216|ref|ZP_08026020.1| GTP-binding protein Era [Actinomyces sp. oral taxon 178 str. F0338] gi|319978841|gb|EFW10380.1| GTP-binding protein Era [Actinomyces sp. oral taxon 178 str. F0338] Length = 396 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 53/181 (29%), Positives = 85/181 (46%), Gaps = 5/181 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 ++IVG PNVGKSTL N LV +K+A+ P TR + G +G +VDT G + Sbjct: 104 VSIVGRPNVGKSTLTNALVGQKVAITSGRPETTRHNIRGIVHGDGYQLVLVDTPGYHRPR 163 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + K++ND A+ E +LF + + I P D I LR P+I V+ K D Sbjct: 164 TL-LGKRLNDMVREALAEVDAVLFCLPADQRIGPGDQFIARELRGVKRPVIAVATKCDAV 222 Query: 125 IAQRNFYEIYSL----DFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 +R + ++ ++ IV +S+ G L V+ + P +P + + R Sbjct: 223 GRERVMKHLLAIERLGEWSAIVPVSSVEGKGIDHLRDVLAQTVPASPPLYPEGDVTDESR 282 Query: 181 N 181 + Sbjct: 283 D 283 Score = 43.5 bits (101), Expect = 0.078, Method: Compositional matrix adjust. Identities = 23/78 (29%), Positives = 41/78 (52%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +++VGRPNVGKSTL N L+G +T + TR ++ + + + + DT G +P Sbjct: 104 VSIVGRPNVGKSTLTNALVGQKVAITSGRPETTRHNIRGIVHGDGYQLVLVDTPGYHRPR 163 Query: 266 RITESLEQKTVKKSMQSV 283 + V++++ V Sbjct: 164 TLLGKRLNDMVREALAEV 181 >gi|317453517|emb|CBL87868.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISAL 158 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 84/172 (48%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D ++S L++N+ Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLSALDLNQ 170 >gi|291288764|ref|YP_003505580.1| tRNA modification GTPase TrmE [Denitrovibrio acetiphilus DSM 12809] gi|290885924|gb|ADD69624.1| tRNA modification GTPase TrmE [Denitrovibrio acetiphilus DSM 12809] Length = 437 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 40/121 (33%), Positives = 69/121 (57%), Gaps = 5/121 (4%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP 264 RIA+VG+PN GKS+L+N LL +R + +G TRD + S+ P+ + DTAGMR Sbjct: 211 RIAIVGKPNTGKSSLMNYLLKEDRAIVSEVAGTTRDYIESSFVLDGVPVSLVDTAGMRFT 270 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++E+ ++K++ + + +VLLD ++P +D ++ G +L +NK Sbjct: 271 D---DAIEKAGIEKTVSLINDADLVVVLLDNSLPLNHEDENVLS--ITEGMDRLLVVNKC 325 Query: 325 D 325 D Sbjct: 326 D 326 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 48/147 (32%), Positives = 82/147 (55%), Gaps = 11/147 (7%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 Y IAIVG PN GKS+L N L+K+ A+V G TRD + +++GV ++VDTAG+ Sbjct: 210 YRIAIVGKPNTGKSSLMNYLLKEDRAIVSEVAGTTRDYIESSFVLDGVPVSLVDTAGMR- 268 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + +I K ++T IN+A L++ L+D+ + D + S + + ++V NK D Sbjct: 269 FTDDAIEKAGIEKTVSLINDADLVVVLLDNSLPLNHEDENVLSI--TEGMDRLLVVNKCD 326 Query: 123 TRIAQRNFYEIYSLDFKEIVEISAEHD 149 + +N ++ ++D +S +HD Sbjct: 327 S----QNILDLDNVD----CHVSVKHD 345 >gi|78224743|ref|YP_386490.1| tRNA modification GTPase TrmE [Geobacter metallireducens GS-15] gi|123570636|sp|Q39PQ9|MNME_GEOMG RecName: Full=tRNA modification GTPase mnmE gi|78195998|gb|ABB33765.1| tRNA modification GTPase trmE [Geobacter metallireducens GS-15] Length = 457 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 55/195 (28%), Positives = 96/195 (49%), Gaps = 17/195 (8%) Query: 179 KRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGIT 238 K E S + EG + + + + + G+PNVGKS+L+N LL R + S G T Sbjct: 197 KAREASGRIEELLEGFDEGRVLRDGVSVLIAGKPNVGKSSLLNTLLQEKRAIVTSVPGTT 256 Query: 239 RDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 RD + N + P+ + DTAG+R+ + +EQ+ V+ +++ + + + +LD + P Sbjct: 257 RDIIEEVVNVRGLPLRMLDTAGIRETEDV---VEQEGVRLTLEKIPQADLILFVLDGSRP 313 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 F+ D I+ LA + +V++K +L LR ++ ++ IS Sbjct: 314 FDDDDRMIL---------AALAERRVIVVTNKSDLPVTLRIPG-----ELEGVHTVAIST 359 Query: 359 RTGEGLDDLMVSVLE 373 TG G+DDL +V E Sbjct: 360 ATGAGIDDLREAVFE 374 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 51/161 (31%), Positives = 85/161 (52%), Gaps = 8/161 (4%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 ++ I G PNVGKS+L N L+++K A+V + PG TRD + + G+ ++DTAGI + Sbjct: 223 SVLIAGKPNVGKSSLLNTLLQEKRAIVTSVPGTTRDIIEEVVNVRGLPLRMLDTAGIRET 282 Query: 64 KNCSIAKQMNDQTELA-INEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 ++ + +Q + L I +A LILF++D D I + L ++ +I+V+NK D Sbjct: 283 ED--VVEQEGVRLTLEKIPQADLILFVLDGSRPFDDDDRMILAALAERR--VIVVTNKSD 338 Query: 123 TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 + R E+ + V IS G +L +F+ F Sbjct: 339 LPVTLRIPGELEGV---HTVAISTATGAGIDDLREAVFETF 376 >gi|18075595|emb|CAD11193.1| GTP-binding protein [Helicobacter pylori] gi|18075597|emb|CAD11194.1| GTP-binding protein [Helicobacter pylori] gi|18075599|emb|CAD11195.1| GTP-binding protein [Helicobacter pylori] gi|122700747|emb|CAL87962.1| GTPase [Helicobacter pylori] gi|122700749|emb|CAL87963.1| GTPase [Helicobacter pylori] gi|122700755|emb|CAL87966.1| GTPase [Helicobacter pylori] gi|122700761|emb|CAL87969.1| GTPase [Helicobacter pylori] gi|122700795|emb|CAL87986.1| GTPase [Helicobacter pylori] gi|122700801|emb|CAL87989.1| GTPase [Helicobacter pylori] gi|122700803|emb|CAL87990.1| GTPase [Helicobacter pylori] gi|122700817|emb|CAL87997.1| GTPase [Helicobacter pylori] gi|122700851|emb|CAL88014.1| GTPase [Helicobacter pylori] gi|122700877|emb|CAL88027.1| GTPase [Helicobacter pylori] gi|122700923|emb|CAL88050.1| GTPase [Helicobacter pylori] gi|122701535|emb|CAL88157.1| GTPase [Helicobacter pylori] gi|122701673|emb|CAL88226.1| GTPase [Helicobacter pylori] gi|122701681|emb|CAL88230.1| GTPase [Helicobacter pylori] gi|122701691|emb|CAL88235.1| GTPase [Helicobacter pylori] gi|122702245|emb|CAL88313.1| GTPase [Helicobacter pylori] gi|122702295|emb|CAL88338.1| GTPase [Helicobacter pylori] gi|122702317|emb|CAL88349.1| GTPase [Helicobacter pylori] gi|122702331|emb|CAL88356.1| GTPase [Helicobacter pylori] gi|122702363|emb|CAL88372.1| GTPase [Helicobacter pylori] gi|122702365|emb|CAL88373.1| GTPase [Helicobacter pylori] gi|122702381|emb|CAL88381.1| GTPase [Helicobacter pylori] gi|122702383|emb|CAL88382.1| GTPase [Helicobacter pylori] gi|122702431|emb|CAL88406.1| GTPase [Helicobacter pylori] gi|122702449|emb|CAL88415.1| GTPase [Helicobacter pylori] gi|122702477|emb|CAL88429.1| GTPase [Helicobacter pylori] gi|122702525|emb|CAL88452.1| GTPase [Helicobacter pylori] gi|122702825|emb|CAL88602.1| GTPase [Helicobacter pylori] gi|292806442|gb|ADE42351.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806484|gb|ADE42372.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806506|gb|ADE42383.1| GTP-binding protein-like protein [Helicobacter pylori] gi|317453523|emb|CBL87871.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISAL 158 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|227523332|ref|ZP_03953381.1| tRNA modification GTPase TrmE [Lactobacillus hilgardii ATCC 8290] gi|227089523|gb|EEI24835.1| tRNA modification GTPase TrmE [Lactobacillus hilgardii ATCC 8290] Length = 464 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 65/203 (32%), Positives = 106/203 (52%), Gaps = 15/203 (7%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 +I+G PNVGKS+L N L+ + A+V + PG TRD L A ++GV ++DTAGI D N Sbjct: 229 SIIGRPNVGKSSLLNHLLHEDKAIVTDVPGTTRDVLEEYANVSGVPLKLIDTAGIRD-TN 287 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 + K D++ AIN A L+L ++++ +T D + KK I+V NK D I Sbjct: 288 DKVEKIGVDRSRKAINSADLVLLVLNASEPLTEEDRQLIDATNKKK--RIVVLNKTDLPI 345 Query: 126 AQRNFYEIYSLDFKEIV----EISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 + N EI L + + I A+ G EL S +F F + + +++ N R+ Sbjct: 346 -KLNLSEIKRLTKAQNIISTSAIKADGLKGLEELISTMF--FNEGIASSQNDVVVTNARH 402 Query: 182 EESPKENITSEGKSSVKNISKPL 204 + ++ KS+++++ K L Sbjct: 403 -----IGLLNQAKSALEDVLKGL 420 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 86/155 (55%), Gaps = 6/155 (3%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 L +++GRPNVGKS+L+N LL ++ + G TRD + N P+++ DTAG+R Sbjct: 226 LATSIIGRPNVGKSSLLNHLLHEDKAIVTDVPGTTRDVLEEYANVSGVPLKLIDTAGIRD 285 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 + + +E+ V +S +++ + + +++L+A+ P ++D +++D+ VV LNK Sbjct: 286 TN---DKVEKIGVDRSRKAINSADLVLLVLNASEPLTEEDRQLIDATNKKKRIVV--LNK 340 Query: 324 WDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 D+ KLNL + R +N+ I + + G Sbjct: 341 TDL-PIKLNLSEIKRLTKAQNIISTSAIKADGLKG 374 >gi|312135210|ref|YP_004002548.1| gtp-binding protein era [Caldicellulosiruptor owensensis OL] gi|311775261|gb|ADQ04748.1| GTP-binding protein Era [Caldicellulosiruptor owensensis OL] Length = 300 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 50/149 (33%), Positives = 83/149 (55%), Gaps = 10/149 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A++G PNVGKSTL N LV KK++++ P TR+ + G + +DT G+ K Sbjct: 8 VALIGRPNVGKSTLMNYLVGKKISIISPKPQTTRNSIKGILTLEDAQIIFIDTPGVHPPK 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDS-KAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 N + + M +E + E LIL+++++ GI P+D AI L++ P I+V NK D Sbjct: 68 N-KLGEYMVKVSEKTLKEVDLILYIVEAIDNGIGPWDEAIVEKLKEVETPKILVLNKSD- 125 Query: 124 RIAQRNFYEIY------SLDFKEIVEISA 146 +A + E+ L+F+ I++I+A Sbjct: 126 -LASKENIEVLKSIFSAKLNFESIIDIAA 153 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 51/183 (27%), Positives = 85/183 (46%), Gaps = 18/183 (9%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKSTL+N L+G + + TR+S+ ++ I DT G+ P Sbjct: 8 VALIGRPNVGKSTLMNYLVGKKISIISPKPQTTRNSIKGILTLEDAQIIFIDTPGVHPPK 67 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATI-PFEKQDLRIVDSVFNTGHAVVLALNKW 324 K +K+++ V + +D I P+ D IV+ + +L LNK Sbjct: 68 NKLGEYMVKVSEKTLKEVDLILYIVEAIDNGIGPW---DEAIVEKLKEVETPKILVLNKS 124 Query: 325 DMVS-DKLNLLQD-----LRTKAIKNLPQIG----DIYINTISGRTGEG----LDDLMVS 370 D+ S + + +L+ L ++I ++ I D+ +N I EG LDD+ Sbjct: 125 DLASKENIEVLKSIFSAKLNFESIIDIAAINGYNCDLLLNEIKELLPEGPKYYLDDMTTD 184 Query: 371 VLE 373 V E Sbjct: 185 VRE 187 >gi|122702127|emb|CAL88254.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERSYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 84/172 (48%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R+ A + I+ R L D ++S L +N+ Sbjct: 125 D--NDK----EKERSYAFSSFGMPKSFNISVSHNRGISALIDAILSALNLNQ 170 >gi|122701589|emb|CAL88184.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYIVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERSYAFSSFGIPKSFNISVSHNRGISAL 158 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYIVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122701491|emb|CAL88135.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDTIL 163 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|99905865|gb|ABF68627.1| YphC [Helicobacter pylori] gi|122702641|emb|CAL88510.1| GTPase [Helicobacter pylori] gi|242255928|gb|ACS88948.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|292806422|gb|ADE42341.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 82/156 (52%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 G ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 KG--ALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISAL 158 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKGA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122701409|emb|CAL88094.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISTLIDAIL 163 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|317452813|emb|CBL87842.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|306821555|ref|ZP_07455153.1| tRNA modification GTPase TrmE [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550300|gb|EFM38293.1| tRNA modification GTPase TrmE [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 457 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 44/131 (33%), Positives = 77/131 (58%), Gaps = 5/131 (3%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K IS + IA++GRPNVGKS+L+N LL NR + +G TRD ++ S + + + D Sbjct: 214 KVISDGISIAIIGRPNVGKSSLLNELLEENRAIVTDIAGTTRDIITESLSINGISVNLID 273 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ + E + V++SM S+ + +++LD + +D +++ + + H + Sbjct: 274 TAGIRETQDVVEKI---GVERSMSSIENADIILLVLDTSDKLNAEDKELMEKLRDR-HYL 329 Query: 318 VLALNKWDMVS 328 +L LNK D+ S Sbjct: 330 IL-LNKSDLQS 339 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 46/157 (29%), Positives = 86/157 (54%), Gaps = 3/157 (1%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 +IAI+G PNVGKS+L N L+++ A+V + G TRD + ING+ N++DTAGI + Sbjct: 221 SIAIIGRPNVGKSSLLNELLEENRAIVTDIAGTTRDIITESLSINGISVNLIDTAGIRET 280 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 ++ + K +++ +I A +IL ++D+ + D + LR ++ I++ + + + Sbjct: 281 QDV-VEKIGVERSMSSIENADIILLVLDTSDKLNAEDKELMEKLRDRHYLILLNKSDLQS 339 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 + + + +D + I+ IS G EL I+ Sbjct: 340 NLDINDLPDF--IDRENIINISTLDKRGIEELKENIY 374 >gi|122700779|emb|CAL87978.1| GTPase [Helicobacter pylori] gi|122700875|emb|CAL88026.1| GTPase [Helicobacter pylori] gi|122701457|emb|CAL88118.1| GTPase [Helicobacter pylori] gi|122701471|emb|CAL88125.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISTL 158 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122700811|emb|CAL87994.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRRIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISAL 158 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRRIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|99905867|gb|ABF68628.1| YphC [Helicobacter pylori] Length = 170 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDREKERAYAFSSFGMPKSFNISVSHNRGISAL 158 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|292806524|gb|ADE42392.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYIVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISAL 158 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYIVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122702185|emb|CAL88283.1| GTPase [Helicobacter pylori] gi|122702721|emb|CAL88550.1| GTPase [Helicobacter pylori] gi|292806450|gb|ADE42355.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806462|gb|ADE42361.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806468|gb|ADE42364.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806616|gb|ADE42438.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREIFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISAL 158 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ +F L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREIFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122701607|emb|CAL88193.1| GTPase [Helicobacter pylori] gi|122702199|emb|CAL88290.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|242255912|gb|ACS88940.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 84/172 (48%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D ++S L++N+ Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSALDLNQ 170 >gi|122702463|emb|CAL88422.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERSYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122700685|emb|CAL87931.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 52/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G + L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGINALIDAIL 163 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122700595|emb|CAL87886.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 52/164 (31%), Positives = 85/164 (51%), Gaps = 6/164 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKAINLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 K+D + Y S + IS H+ G S L + + Sbjct: 123 KIDNDKEKERSYAFSSFGMPKSFNISVSHNRGISALIDAVLNVL 166 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 85/172 (49%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKAINLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R+ A + I+ R L D +++VL +N+ Sbjct: 125 D--NDK----EKERSYAFSSFGMPKSFNISVSHNRGISALIDAVLNVLNLNQ 170 >gi|122700597|emb|CAL87887.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDVNKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERSYAFSSFGAPKSFNISVSHNRGISAL 158 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDVNKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|329919799|ref|ZP_08276750.1| tRNA modification GTPase TrmE [Lactobacillus iners SPIN 1401G] gi|328937146|gb|EGG33574.1| tRNA modification GTPase TrmE [Lactobacillus iners SPIN 1401G] Length = 461 Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 57/176 (32%), Positives = 90/176 (51%), Gaps = 4/176 (2%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AIVG PNVGKS+L N L K++ A+V N G TRD L + G++ ++DTAGI + Sbjct: 228 AIVGRPNVGKSSLLNYLSKEEKAIVTNIAGTTRDTLEEYVSLKGILLKLIDTAGIRQTDD 287 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 + K ++++ AI E+ L+L LI+S +T D + + K I++ NK D ++ Sbjct: 288 I-VEKIGVERSKRAITESDLVLLLINSSEELTEEDQKLLELTQDK--KRIVILNKAD-QV 343 Query: 126 AQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 A+ +I + IV IS L I +F Q + E++ N+R Sbjct: 344 AKITKKDIQKITDSPIVTISVLKKQNMIGLEEAIKSLFLQGITDSKSEVMVTNQRQ 399 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 37/131 (28%), Positives = 75/131 (57%), Gaps = 5/131 (3%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + L A+VGRPNVGKS+L+N L + + + +G TRD++ + K +++ D Sbjct: 219 KVVRSGLATAIVGRPNVGKSSLLNYLSKEEKAIVTNIAGTTRDTLEEYVSLKGILLKLID 278 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ I E + V++S +++ + ++L++++ ++D ++++ + V Sbjct: 279 TAGIRQTDDIVEKI---GVERSKRAITESDLVLLLINSSEELTEEDQKLLELTQDKKRIV 335 Query: 318 VLALNKWDMVS 328 + LNK D V+ Sbjct: 336 I--LNKADQVA 344 >gi|99905855|gb|ABF68622.1| YphC [Helicobacter pylori] Length = 170 Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISAL 158 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|93004284|gb|ABE97062.1| YphC [Helicobacter pylori] Length = 170 Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVLHNRGISALIDAIL 163 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 86/172 (50%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ + R L D ++S L++N+ Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVLHNRGISALIDAILSALDLNQ 170 >gi|78045135|ref|YP_359291.1| GTP-binding protein Era [Carboxydothermus hydrogenoformans Z-2901] gi|123576937|sp|Q3AEZ3|ERA_CARHZ RecName: Full=GTPase Era gi|77997250|gb|ABB16149.1| GTP-binding protein Era [Carboxydothermus hydrogenoformans Z-2901] Length = 298 Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 55/175 (31%), Positives = 99/175 (56%), Gaps = 13/175 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIING----VIFNIVDTAGI 60 ++IVG PNVGKSTL N++V K+A++ + P TR+++ +A++ +IF +DT G+ Sbjct: 8 VSIVGRPNVGKSTLLNQVVGTKIAIMSDKPQTTRNKI--RAVLTSEKGQIIF--IDTPGV 63 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 +N + + M Q +++E ++L+++++ + I P ++ + L + PII+V NK Sbjct: 64 QKPRN-KLGEFMLKQALTSLDEVDVLLYVVEANSPIGPQENYLLKTLAEVKTPIILVVNK 122 Query: 121 MDTRI---AQRNFYEIYS-LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHP 171 +D AQ +I S L + ISA + G SEL IF++ + P +P Sbjct: 123 IDVVKMIEAQTLARQIESRLKVAKTYYISALNGTGVSELVEGIFELLPEGPPYYP 177 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 43/169 (25%), Positives = 88/169 (52%), Gaps = 8/169 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +++VGRPNVGKSTL+N+++G + + TR+ + + I DT G++KP Sbjct: 8 VSIVGRPNVGKSTLLNQVVGTKIAIMSDKPQTTRNKIRAVLTSEKGQIIFIDTPGVQKPR 67 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + +K+++ S+ + + +++A P Q+ ++ ++ ++L +NK D Sbjct: 68 N---KLGEFMLKQALTSLDEVDVLLYVVEANSPIGPQENYLLKTLAEVKTPIILVVNKID 124 Query: 326 MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEI 374 +V K+ Q L + I++ ++ Y IS G G+ +L+ + E+ Sbjct: 125 VV--KMIEAQTL-ARQIESRLKVAKTY--YISALNGTGVSELVEGIFEL 168 >gi|312876169|ref|ZP_07736156.1| tRNA modification GTPase TrmE [Caldicellulosiruptor lactoaceticus 6A] gi|311796984|gb|EFR13326.1| tRNA modification GTPase TrmE [Caldicellulosiruptor lactoaceticus 6A] Length = 455 Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 56/150 (37%), Positives = 87/150 (58%), Gaps = 10/150 (6%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 IYT+ IVG PNVGKS+L NRL+K++ A+V + PG TRD + I G+ + DTAG+ Sbjct: 221 IYTV-IVGRPNVGKSSLLNRLLKEEKAIVTDIPGTTRDVIEEVLDIEGIPIILADTAGVR 279 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 ++ + K +T +I A L+LF+I+S +GI D I ++ K I++ NK+ Sbjct: 280 KTEDV-VEKIGVKKTLESIERADLVLFMIES-SGILQEDLEIFETIKDKR--FIVLVNKI 335 Query: 122 D--TRIAQRNFYEIYSLDFKEIVEISAEHD 149 D +++ + I+ KE + IS EHD Sbjct: 336 DKEVKVSHEDIKRIFG---KEGIFISVEHD 362 Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 40/128 (31%), Positives = 72/128 (56%), Gaps = 6/128 (4%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K I + +VGRPNVGKS+L+NRLL + + G TRD + + + PI + D Sbjct: 215 KAIKSGIYTVIVGRPNVGKSSLLNRLLKEEKAIVTDIPGTTRDVIEEVLDIEGIPIILAD 274 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+RK + E + VKK+++S+ + + +++++ ++DL I +++ + V Sbjct: 275 TAGVRKTEDVVEKI---GVKKTLESIERADLVLFMIESS-GILQEDLEIFETIKDKRFIV 330 Query: 318 VLALNKWD 325 + +NK D Sbjct: 331 L--VNKID 336 >gi|296535949|ref|ZP_06898098.1| GTP-binding protein Era [Roseomonas cervicalis ATCC 49957] gi|296263722|gb|EFH10198.1| GTP-binding protein Era [Roseomonas cervicalis ATCC 49957] Length = 319 Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 53/172 (30%), Positives = 83/172 (48%), Gaps = 11/172 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VGAPN GKSTL NRL K+++V P TR R+ + + DT GI + Sbjct: 30 VAVVGAPNAGKSTLVNRLAGAKVSIVSPKPQTTRFRIRAVVMQERTQIVLTDTPGIFSPR 89 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + M +A L L ++DS+AG+T +I S L++ +PI +V NK D Sbjct: 90 R-RLDRAMVAAAWEGAQDADLALLIVDSRAGMTEAVESIISVLKRSRVPIWLVLNKSDL- 147 Query: 125 IAQRNFYEIYS-----LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHP 171 I + + + L F+E ISAE G + + + + + P P Sbjct: 148 IDTKKLLPLTASLNEQLSFEETFMISAEKGDGLDRMMAALGR----RLPEGP 195 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 78/166 (46%), Gaps = 8/166 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +AVVG PN GKSTL+NRL G + + TR + + I + DT G+ P Sbjct: 30 VAVVGAPNAGKSTLVNRLAGAKVSIVSPKPQTTRFRIRAVVMQERTQIVLTDTPGIFSPR 89 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 R L++ V + + + + ++++D+ + I+ + + + L LNK D Sbjct: 90 R---RLDRAMVAAAWEGAQDADLALLIVDSRAGMTEAVESIISVLKRSRVPIWLVLNKSD 146 Query: 326 MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSV 371 ++ K LL T ++ + ++ IS G+GLD +M ++ Sbjct: 147 LIDTK-KLLP--LTASLNEQLSFEETFM--ISAEKGDGLDRMMAAL 187 >gi|161507651|ref|YP_001577605.1| GTP-binding protein Era [Lactobacillus helveticus DPC 4571] gi|254783658|sp|A8YVM7|ERA_LACH4 RecName: Full=GTPase Era gi|160348640|gb|ABX27314.1| GTP-binding protein [Lactobacillus helveticus DPC 4571] Length = 301 Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 90/163 (55%), Gaps = 10/163 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A++G PNVGKSTL N LV +K+A+ N P TR+R+ G + + VDT GI Sbjct: 11 VALLGRPNVGKSTLMNYLVGQKVAITSNKPQTTRNRISGIYTSDKMQVVFVDTPGIFK-P 69 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 + + M+ + ++N+ L+LF+++ + I D I + L++ +P+ +V NK+D Sbjct: 70 HSKLDDYMDKASLSSLNDVDLVLFMVEPEE-IGKGDQYIANLLKEVKVPVFLVINKVDQI 128 Query: 124 -----RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 + +++++ FKEI+ ISA +G +L + I K Sbjct: 129 HPNKLLLIMDSYHKLEG--FKEILPISATQGIGIEDLLNTINK 169 Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 48/168 (28%), Positives = 84/168 (50%), Gaps = 13/168 (7%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP- 264 +A++GRPNVGKSTL+N L+G +T ++ TR+ +S + + DT G+ KP Sbjct: 11 VALLGRPNVGKSTLMNYLVGQKVAITSNKPQTTRNRISGIYTSDKMQVVFVDTPGIFKPH 70 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 S++ + ++ K S+ S+ + + +++ K D I + + V L +NK Sbjct: 71 SKLDDYMD----KASLSSLNDVDLVLFMVEPE-EIGKGDQYIANLLKEVKVPVFLVINKV 125 Query: 325 DMVS-DKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSV 371 D + +KL L+ D K G I IS G G++DL+ ++ Sbjct: 126 DQIHPNKLLLIMDSYHKL------EGFKEILPISATQGIGIEDLLNTI 167 >gi|122701459|emb|CAL88119.1| GTPase [Helicobacter pylori] gi|122701697|emb|CAL88238.1| GTPase [Helicobacter pylori] gi|122702709|emb|CAL88544.1| GTPase [Helicobacter pylori] gi|242255954|gb|ACS88961.1| GTPase [Helicobacter pylori] gi|292806420|gb|ADE42340.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806432|gb|ADE42346.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806488|gb|ADE42374.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806530|gb|ADE42395.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806648|gb|ADE42454.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806658|gb|ADE42459.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISAL 158 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122700639|emb|CAL87908.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGTPKSFNISVSHNRGISAL 158 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|257067216|ref|YP_003153472.1| tRNA modification GTPase TrmE [Anaerococcus prevotii DSM 20548] gi|256799096|gb|ACV29751.1| tRNA modification GTPase TrmE [Anaerococcus prevotii DSM 20548] Length = 452 Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 72/119 (60%), Gaps = 5/119 (4%) Query: 208 VVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRI 267 ++G+PNVGKS+L+N++L NR + G TRD ++ ++ + ++I DTAG+R+ + Sbjct: 226 IIGKPNVGKSSLLNKMLKENRAIVTDVPGTTRDLITEYISFGDFTLKINDTAGIRETDDL 285 Query: 268 TESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 E + V KS++ + + I + D + PF+K+D +I+D + G ++ LNK D+ Sbjct: 286 VEKI---GVDKSIELIDESDLIIAIFDTSRPFDKEDEKIIDLI--KGRNAIIILNKADL 339 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 55/182 (30%), Positives = 90/182 (49%), Gaps = 12/182 (6%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 I+G PNVGKS+L N+++K+ A+V + PG TRD + I DTAGI + + Sbjct: 226 IIGKPNVGKSSLLNKMLKENRAIVTDVPGTTRDLITEYISFGDFTLKINDTAGIRETDDL 285 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 + K D++ I+E+ LI+ + D+ D I ++ +N II+ NK D + Sbjct: 286 -VEKIGVDKSIELIDESDLIIAIFDTSRPFDKEDEKIIDLIKGRN--AIIILNKAD--LE 340 Query: 127 QRNFYEIYSLDFKEI-VEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEESP 185 + F+ DF ++ ++ S D G +L I ++F K +I N R+E Sbjct: 341 DKFFH-----DFDQVTIKTSMAQDEGIDKLEEAITEMFNTKDIKRESVLI-TNTRHERLL 394 Query: 186 KE 187 KE Sbjct: 395 KE 396 >gi|122702833|emb|CAL88606.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERSYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 85/172 (49%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R+ A + I+ R L D ++S L++N+ Sbjct: 125 D--NDK----EKERSYAFSSFGMPKSFNISVSHNRGISALIDAILSALDLNQ 170 >gi|122701341|emb|CAL88060.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 52/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L + Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISALIDAVL 163 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122702123|emb|CAL88252.1| GTPase [Helicobacter pylori] gi|122702555|emb|CAL88467.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERSYAFSSFGAPKSFNISVSHNRGISAL 158 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|99905873|gb|ABF68631.1| YphC [Helicobacter pylori] Length = 170 Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREIFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISALIDAIL 163 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ +F L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREIFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|317453509|emb|CBL87864.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISAL 158 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|224534062|ref|ZP_03674645.1| tRNA modification GTPase TrmE [Borrelia burgdorferi CA-11.2a] gi|224512761|gb|EEF83129.1| tRNA modification GTPase TrmE [Borrelia burgdorferi CA-11.2a] Length = 373 Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 41/122 (33%), Positives = 71/122 (58%), Gaps = 2/122 (1%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 + + G+ N GKS+LFN +KK ++V ++PG TRD + ++G++FN+ DTAG+ D Sbjct: 133 ALVLAGSVNAGKSSLFNLFLKKDRSIVSSYPGTTRDYIEASFELDGILFNLFDTAGLRDA 192 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 N + + +++ I EA L++++ID + +T D K N I+ V NK+D Sbjct: 193 DNF-VERLGIEKSNSLIKEASLVIYVIDVSSNLTKDDFLFID-SNKSNSKILFVLNKIDL 250 Query: 124 RI 125 +I Sbjct: 251 KI 252 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 51/188 (27%), Positives = 85/188 (45%), Gaps = 21/188 (11%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 + I + + + G N GKS+L N L +R + S G TRD + S+ +FD Sbjct: 126 EKIDNGVALVLAGSVNAGKSSLFNLFLKKDRSIVSSYPGTTRDYIEASFELDGILFNLFD 185 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R E L ++KS ++ I ++D + K D +DS + + Sbjct: 186 TAGLRDADNFVERL---GIEKSNSLIKEASLVIYVIDVSSNLTKDDFLFIDSN-KSNSKI 241 Query: 318 VLALNKWDMVSDKLNLLQDLRTKAI----------KNLPQIGDIYINTISG-----RTGE 362 + LNK D+ +K + + +R+K + KNL I DI + I R Sbjct: 242 LFVLNKIDLKINK-STEEFVRSKVLNSSNLIMISTKNLEGI-DILYDKIRALISYERVEI 299 Query: 363 GLDDLMVS 370 G+DD+++S Sbjct: 300 GVDDIIIS 307 >gi|163784387|ref|ZP_02179279.1| GTP-binding protein Era [Hydrogenivirga sp. 128-5-R1-1] gi|159880342|gb|EDP73954.1| GTP-binding protein Era [Hydrogenivirga sp. 128-5-R1-1] Length = 312 Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 57/174 (32%), Positives = 89/174 (51%), Gaps = 10/174 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTL N ++ K+++V P TR R+ G +DT G+ GK Sbjct: 22 VALVGRPNVGKSTLLNNILGVKVSIVSPKPQTTRMRILGVKHDKDAQIIFLDTPGVQKGK 81 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYD-HAITSFLRKKNIPIIIVSNKMDT 123 + + K + + ++ EA LI +ID+ G T D + ++L+K + P+I++ NK+D Sbjct: 82 DI-LTKTVVESAVSSMEEADLIAMIIDATKGWTKNDLQIVDNYLKKLDKPVILIINKVDK 140 Query: 124 RIAQ------RNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHP 171 + +IY +FKEIV ISA + L VI K + P P Sbjct: 141 VPKELLLPLIEQSTKIY--EFKEIVPISALKGVNLDRLTQVIKKYLPESPPLFP 192 Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 50/148 (33%), Positives = 82/148 (55%), Gaps = 5/148 (3%) Query: 187 ENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISW 246 +N++ EGKS +++ K +A+VGRPNVGKSTL+N +LG + + TR + Sbjct: 4 KNLSYEGKS-MEDKFKAGFVALVGRPNVGKSTLLNNILGVKVSIVSPKPQTTRMRILGVK 62 Query: 247 NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRI 306 + K+ I DT G++K I L + V+ ++ S+ + +++DAT + K DL+I Sbjct: 63 HDKDAQIIFLDTPGVQKGKDI---LTKTVVESAVSSMEEADLIAMIIDATKGWTKNDLQI 119 Query: 307 VDSVFNT-GHAVVLALNKWDMVSDKLNL 333 VD+ V+L +NK D V +L L Sbjct: 120 VDNYLKKLDKPVILIINKVDKVPKELLL 147 >gi|122702227|emb|CAL88304.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPGDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPGD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122702133|emb|CAL88257.1| GTPase [Helicobacter pylori] gi|122702141|emb|CAL88261.1| GTPase [Helicobacter pylori] Length = 170 Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISALIDAIL 163 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|99905877|gb|ABF68633.1| YphC [Helicobacter pylori] Length = 170 Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSSNISVSHNRGISALIDAIL 163 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|311064218|ref|YP_003970943.1| GTP-binding protein [Bifidobacterium bifidum PRL2010] gi|310866537|gb|ADP35906.1| Era GTP-binding protein [Bifidobacterium bifidum PRL2010] Length = 336 Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 60/203 (29%), Positives = 99/203 (48%), Gaps = 22/203 (10%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTL N L+ K++A+ + P TR + G + +VDT GI + Sbjct: 31 IAVVGRPNVGKSTLINALIGKQVAIASSRPETTRKAIRGILTTDHAQLVLVDTPGIHRPR 90 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKK------------NI 112 + +++ND E ++++ I FL+ + I P D I S LR + Sbjct: 91 TL-LGQRLNDIVEESLSDIDAIAFLLPADQEIGPGDKRILSRLRTDFATKGEDGTFAWKV 149 Query: 113 PIIIVSNKMDTRIAQRNFYEIYSL----DFKEIVEISAEHDLGTSELHSVIFKIFKQKYP 168 P+I + K+D Q+ ++ + DF +IV +SA LG L V ++ P Sbjct: 150 PLIAIVTKIDQLGRQQLIDKLIEINEFADFSDIVPVSA---LGHDNLDEV-RQVLIDNTP 205 Query: 169 NHPLEMIENNKRNEESPKENITS 191 P +M +++ +EE P++ I Sbjct: 206 EGP-QMYPDDQVSEERPEDTIAE 227 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 42/78 (53%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IAVVGRPNVGKSTLIN L+G + S+ TR ++ + + + DT G+ +P Sbjct: 31 IAVVGRPNVGKSTLINALIGKQVAIASSRPETTRKAIRGILTTDHAQLVLVDTPGIHRPR 90 Query: 266 RITESLEQKTVKKSMQSV 283 + V++S+ + Sbjct: 91 TLLGQRLNDIVEESLSDI 108 >gi|259500781|ref|ZP_05743683.1| tRNA modification GTPase TrmE [Lactobacillus iners DSM 13335] gi|302190768|ref|ZP_07267022.1| tRNA modification GTPase TrmE [Lactobacillus iners AB-1] gi|309805912|ref|ZP_07699944.1| tRNA modification GTPase TrmE [Lactobacillus iners LactinV 03V1-b] gi|315654126|ref|ZP_07907042.1| tRNA modification GTPase TrmE [Lactobacillus iners ATCC 55195] gi|325913694|ref|ZP_08176056.1| tRNA modification GTPase TrmE [Lactobacillus iners UPII 60-B] gi|259167475|gb|EEW51970.1| tRNA modification GTPase TrmE [Lactobacillus iners DSM 13335] gi|308167688|gb|EFO69835.1| tRNA modification GTPase TrmE [Lactobacillus iners LactinV 03V1-b] gi|315488822|gb|EFU78468.1| tRNA modification GTPase TrmE [Lactobacillus iners ATCC 55195] gi|325477053|gb|EGC80203.1| tRNA modification GTPase TrmE [Lactobacillus iners UPII 60-B] Length = 461 Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 57/176 (32%), Positives = 90/176 (51%), Gaps = 4/176 (2%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AIVG PNVGKS+L N L K++ A+V N G TRD L + G++ ++DTAGI + Sbjct: 228 AIVGRPNVGKSSLLNYLSKEEKAIVTNIAGTTRDTLEEYVSLKGILLKLIDTAGIRQTDD 287 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 + K ++++ AI E+ L+L LI+S +T D + + K I++ NK D ++ Sbjct: 288 I-VEKIGVERSKRAITESDLVLLLINSSEELTEEDQKLLELTQDK--KRIVILNKAD-QV 343 Query: 126 AQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 A+ +I + IV IS L I +F Q + E++ N+R Sbjct: 344 AKITKKDIQKITDSPIVTISVLKKQNMIGLEEAIKSLFLQGITDSKSEVMVTNQRQ 399 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 37/131 (28%), Positives = 75/131 (57%), Gaps = 5/131 (3%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + L A+VGRPNVGKS+L+N L + + + +G TRD++ + K +++ D Sbjct: 219 KVVRSGLATAIVGRPNVGKSSLLNYLSKEEKAIVTNIAGTTRDTLEEYVSLKGILLKLID 278 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ I E + V++S +++ + ++L++++ ++D ++++ + V Sbjct: 279 TAGIRQTDDIVEKI---GVERSKRAITESDLVLLLINSSEELTEEDQKLLELTQDKKRIV 335 Query: 318 VLALNKWDMVS 328 + LNK D V+ Sbjct: 336 I--LNKADQVA 344 >gi|122702489|emb|CAL88435.1| GTPase [Helicobacter pylori] gi|122702495|emb|CAL88438.1| GTPase [Helicobacter pylori] Length = 170 Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGAPKSFNISVSHNRGISALIDAIL 163 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|118580146|ref|YP_901396.1| GTP-binding protein Era [Pelobacter propionicus DSM 2379] gi|259645964|sp|A1APR8|ERA_PELPD RecName: Full=GTPase Era gi|118502856|gb|ABK99338.1| GTP-binding protein Era [Pelobacter propionicus DSM 2379] Length = 296 Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 55/179 (30%), Positives = 88/179 (49%), Gaps = 10/179 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYG-QAIINGVIFNIVDTAGIADG 63 ++IVG PNVGKSTL NR++ +K+A+ + P TR+R+ G I NG I +DT GI Sbjct: 11 VSIVGRPNVGKSTLLNRIIGEKIAITSDKPQTTRNRIQGIHNIANGQIV-FIDTPGI-HA 68 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + + K M D A+ L+L ++D+ I D + L P+++V NK+D Sbjct: 69 CHSRLNKGMVDAALAALRGVDLLLLVVDAGGAID--DRLVRDVLGGTGTPVMLVLNKVDL 126 Query: 124 RIAQRNFYEIYS-----LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 +R E + F+EI+ ISA G L + + P P +++ + Sbjct: 127 LADKRVLLERMAAWSQLYPFREILPISAGSGEGVDGLIETVCGYLPEGQPLFPDDILTD 185 Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 55/173 (31%), Positives = 93/173 (53%), Gaps = 9/173 (5%) Query: 199 NISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDT 258 N+++ +++VGRPNVGKSTL+NR++G +T + TR+ + N N I DT Sbjct: 4 NVNRFGYVSIVGRPNVGKSTLLNRIIGEKIAITSDKPQTTRNRIQGIHNIANGQIVFIDT 63 Query: 259 AGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVV 318 G+ L + V ++ ++R + ++++DA + + +R D + TG V+ Sbjct: 64 PGIHA---CHSRLNKGMVDAALAALRGVDLLLLVVDAGGAIDDRLVR--DVLGGTGTPVM 118 Query: 319 LALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSV 371 L LNK D+++DK LL+ R A L +I IS +GEG+D L+ +V Sbjct: 119 LVLNKVDLLADKRVLLE--RMAAWSQLYPFREIL--PISAGSGEGVDGLIETV 167 >gi|254481405|ref|ZP_05094650.1| GTP-binding protein Era [marine gamma proteobacterium HTCC2148] gi|214038568|gb|EEB79230.1| GTP-binding protein Era [marine gamma proteobacterium HTCC2148] Length = 299 Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 60/196 (30%), Positives = 92/196 (46%), Gaps = 9/196 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N ++ +K+++ P TR ++ G N VDT G+ + Sbjct: 11 VAIVGRPNVGKSTLLNHILGQKISITSRKPQTTRHQVLGIKTENDSQVIFVDTPGLHKAE 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM--- 121 +I + MN AI LILFLID A T D + +++ IP ++V NK+ Sbjct: 71 EKAINRYMNRAASSAIKHVDLILFLIDRTAW-TEEDQMVLEQVQRTRIPTLLVVNKVDLL 129 Query: 122 -DTRIAQRNFYEIYSL-DFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNK 179 D I + E+ +F+ IV +SA L I K + +P + I + Sbjct: 130 EDKNILLPHLQELADRGEFEAIVPVSALRQRNVDMLEQEILKYMPESEHFYPEDQITDRS 189 Query: 180 RN---EESPKENITSE 192 + E +E IT + Sbjct: 190 QRFLAAEIVREKITRQ 205 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/142 (31%), Positives = 74/142 (52%), Gaps = 15/142 (10%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIF-DTAGMRKP 264 +A+VGRPNVGKSTL+N +LG +T + TR V + +N IF DT G+ K Sbjct: 11 VAIVGRPNVGKSTLLNHILGQKISITSRKPQTTRHQV-LGIKTENDSQVIFVDTPGLHKA 69 Query: 265 SRITESLEQKTVKKSM-----QSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 E+K + + M +++ + + L+D T + ++D +++ V T +L Sbjct: 70 -------EEKAINRYMNRAASSAIKHVDLILFLIDRT-AWTEEDQMVLEQVQRTRIPTLL 121 Query: 320 ALNKWDMVSDKLNLLQDLRTKA 341 +NK D++ DK LL L+ A Sbjct: 122 VVNKVDLLEDKNILLPHLQELA 143 >gi|187251665|ref|YP_001876147.1| putative GTPase [Elusimicrobium minutum Pei191] gi|186971825|gb|ACC98810.1| putative GTPase [Elusimicrobium minutum Pei191] Length = 449 Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 49/180 (27%), Positives = 98/180 (54%), Gaps = 15/180 (8%) Query: 195 SSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIE 254 S+ K + + +++A++G PN GKS+L+N ++G++R + SG TRD+V ++K H I Sbjct: 205 STGKFVKEGIKVAILGVPNAGKSSLLNAIVGFDRAIVSEHSGTTRDTVEEIADFKGHKII 264 Query: 255 IFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTG 314 + DTAG+++ + + E++ +++S+ + + I D + + D + +S+ G Sbjct: 265 LTDTAGIKEGA--LDVAEREGMRRSLNAADKSDIIIFTADTSKKHLQADHELWNSLKIKG 322 Query: 315 HAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEI 374 ++LA NK D+ L + D +N +S +TGEG+++L SV+ + Sbjct: 323 KKIILACNKKDINFTPPEFLYE------------ADKVVN-VSSKTGEGVEELKNSVISL 369 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 49/160 (30%), Positives = 80/160 (50%), Gaps = 6/160 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PN GKS+L N +V A+V H G TRD + A G + DTAGI +G Sbjct: 216 VAILGVPNAGKSSLLNAIVGFDRAIVSEHSGTTRDTVEEIADFKGHKIILTDTAGIKEGA 275 Query: 65 NCSIAKQMNDQTEL-AINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 +A++ + L A +++ +I+F D+ DH + + L+ K II+ NK D Sbjct: 276 -LDVAEREGMRRSLNAADKSDIIIFTADTSKKHLQADHELWNSLKIKGKKIILACNKKDI 334 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 F +Y D ++V +S++ G EL + + + Sbjct: 335 NFTPPEF--LYEAD--KVVNVSSKTGEGVEELKNSVISLL 370 >gi|157693029|ref|YP_001487491.1| GTP-binding protein Era [Bacillus pumilus SAFR-032] gi|157681787|gb|ABV62931.1| GTPase [Bacillus pumilus SAFR-032] Length = 301 Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 50/146 (34%), Positives = 77/146 (52%), Gaps = 5/146 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 ++I+G PNVGKST NR++ +K+A++ + P TR+++ G N +DT GI K Sbjct: 11 VSIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKVQGVLTTNSSQTIFIDTPGIHKPK 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + M + + E LILF+I++K G D I L++ + P+ +V NK+D Sbjct: 71 H-KLGDFMMKVAQNTLKEVDLILFMINAKEGYGKGDEFIIERLKQTSTPVFLVVNKIDQI 129 Query: 125 IAQRNFYEI----YSLDFKEIVEISA 146 F I FKEIV ISA Sbjct: 130 HPDELFLLIDEYRTRYPFKEIVPISA 155 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/132 (28%), Positives = 66/132 (50%), Gaps = 4/132 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 ++++GRPNVGKST +NR++G + + TR+ V + DT G+ KP Sbjct: 11 VSIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKVQGVLTTNSSQTIFIDTPGIHKPK 70 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L +K + +++ + + +++A + K D I++ + T V L +NK D Sbjct: 71 H---KLGDFMMKVAQNTLKEVDLILFMINAKEGYGKGDEFIIERLKQTSTPVFLVVNKID 127 Query: 326 MVS-DKLNLLQD 336 + D+L LL D Sbjct: 128 QIHPDELFLLID 139 >gi|122702707|emb|CAL88543.1| GTPase [Helicobacter pylori] Length = 170 Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 83/161 (51%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 G ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 KG--ALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKGA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122702691|emb|CAL88535.1| GTPase [Helicobacter pylori] gi|317453533|emb|CBL87876.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISALIDAIL 163 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|85057945|ref|YP_456861.1| tRNA modification GTPase TrmE [Aster yellows witches'-broom phytoplasma AYWB] gi|123518017|sp|Q2NIG1|MNME_AYWBP RecName: Full=tRNA modification GTPase mnmE gi|84790050|gb|ABC65782.1| tRNA modification GTPase [Aster yellows witches'-broom phytoplasma AYWB] Length = 460 Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 59/237 (24%), Positives = 117/237 (49%), Gaps = 31/237 (13%) Query: 187 ENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISW 246 ENI S + + + + ++ ++GRPNVGKS+L+N L N+ + SG TRD V + Sbjct: 204 ENILSHSHKN-RYLKEGIKTLIIGRPNVGKSSLLNAFLNENKAIVSDISGTTRDFVEAYF 262 Query: 247 NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRI 306 N + + + DTAG+RK + +E+ + ++ + + E +++LD + +++D+++ Sbjct: 263 NCRGFTLHLIDTAGIRKTD---DPIEKIGILRTEKMLLQAELILLVLDQSNYLQEEDIQL 319 Query: 307 VDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDD 366 + N + ++ NK D+ SDKL I+++ + + Sbjct: 320 LQLTQN--YPRIIIGNKVDLKSDKL---------------------ISSLCDYSSQLTPQ 356 Query: 367 LMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 ++SV ++K + + L+K QL + P FN ++ ++I QIQ + SF Sbjct: 357 EIISVSSLDKTGFFELQ----QTILKKFQLNDIKPKDFNYFSNARHINQIQIALRSF 409 Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 51/162 (31%), Positives = 79/162 (48%), Gaps = 8/162 (4%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 I+G PNVGKS+L N + + A+V + G TRD + G +++DTAGI + Sbjct: 224 IIGRPNVGKSSLLNAFLNENKAIVSDISGTTRDFVEAYFNCRGFTLHLIDTAGIRKTDD- 282 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR-- 124 I K +TE + +A LIL ++D + D + +N P II+ NK+D + Sbjct: 283 PIEKIGILRTEKMLLQAELILLVLDQSNYLQEEDIQLLQL--TQNYPRIIIGNKVDLKSD 340 Query: 125 --IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFK 164 I+ Y L +EI+ +S+ G EL I K F+ Sbjct: 341 KLISSLCDYS-SQLTPQEIISVSSLDKTGFFELQQTILKKFQ 381 >gi|292806632|gb|ADE42446.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLELFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISAL 158 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 63/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL + VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLELFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|255522328|ref|ZP_05389565.1| GTP-binding protein EngA [Listeria monocytogenes FSL J1-175] Length = 168 Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 85/165 (51%), Gaps = 2/165 (1%) Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQ-IGDIYINTISGR 359 +QD RI + G A+++ +NKWD ++ + ++ T+ I+ Q + I +S + Sbjct: 5 EQDKRIAGYAHDAGRAIIIVVNKWDAINKDEKTI-NVWTEDIREQFQFLSYAPIVFVSAK 63 Query: 360 TGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSS 419 T + L++L + +++ R+ +S LN + NP P + ++ Y TQ+ Sbjct: 64 TKQRLNNLFPLINQVSDNHSLRVQSSMLNDVISDAVAMNPSPMDKGKRLKIFYTTQVAVK 123 Query: 420 PPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 PP+F++F P + SY+R+L NR+R F G PIR+ + K Sbjct: 124 PPTFVVFVNDPELMHFSYERFLENRIREAFPFEGTPIRVIARKRK 168 >gi|242255924|gb|ACS88946.1| GTPase [Helicobacter pylori] Length = 170 Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQVSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + + + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLK----AAQVSDLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D ++S L++N+ Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSALDLNQ 170 >gi|18075575|emb|CAD11183.1| GTP-binding protein [Helicobacter pylori] gi|122702579|emb|CAL88479.1| GTPase [Helicobacter pylori] gi|122702809|emb|CAL88594.1| GTPase [Helicobacter pylori] Length = 170 Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGAPKSFNISVSHNRGISAL 158 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|320102486|ref|YP_004178077.1| small GTP-binding protein [Isosphaera pallida ATCC 43644] gi|319749768|gb|ADV61528.1| small GTP-binding protein [Isosphaera pallida ATCC 43644] Length = 404 Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 62/212 (29%), Positives = 105/212 (49%), Gaps = 40/212 (18%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMR-KP 264 +A+ GRPNVGKS+L+N L G+ R + Q+G TRD +++ P+ +FDTAG+R +P Sbjct: 222 VALAGRPNVGKSSLMNALAGHARAIVSPQAGTTRDVLTVPLACDGWPMTLFDTAGLRDQP 281 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 S + LE + + ++ + + ++LLD++ P E DL ++ + N AL Sbjct: 282 S---DDLEAQGILRARNAQTQADLVLLLLDSSQPLEPLDLALLHTYPN-------AL--- 328 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITT 384 +V+ K +L R ++LP + ++S TGEGLD L+ Sbjct: 329 -LVATKADLAPHWRA---EDLPTTRKLV--SLSALTGEGLDRLL---------------- 366 Query: 385 SYLNSWLQKTQLQNPPPTIFNRYNRLKYITQI 416 L + + NPPP R+ ++TQ+ Sbjct: 367 ----DRLAQRLVPNPPPAGSAVPFRIDHLTQL 394 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 35/101 (34%), Positives = 51/101 (50%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + +A+ G PNVGKS+L N L A+V G TRD L +G + DTAG+ D Sbjct: 220 WNVALAGRPNVGKSSLMNALAGHARAIVSPQAGTTRDVLTVPLACDGWPMTLFDTAGLRD 279 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAI 103 + + Q + A +A L+L L+DS + P D A+ Sbjct: 280 QPSDDLEAQGILRARNAQTQADLVLLLLDSSQPLEPLDLAL 320 >gi|242255944|gb|ACS88956.1| GTPase [Helicobacter pylori] Length = 170 Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISAL 158 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 84/172 (48%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D ++S L++N+ Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLSTLDLNQ 170 >gi|154509437|ref|ZP_02045079.1| hypothetical protein ACTODO_01968 [Actinomyces odontolyticus ATCC 17982] gi|153799071|gb|EDN81491.1| hypothetical protein ACTODO_01968 [Actinomyces odontolyticus ATCC 17982] Length = 412 Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 56/183 (30%), Positives = 89/183 (48%), Gaps = 9/183 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFN--IVDTAGIAD 62 ++IVG PNVGKSTL N LV K+A+ P TR + G I++G + +VDT G Sbjct: 120 VSIVGRPNVGKSTLTNALVGHKIAITSGRPETTRHNIRG--IVHGDNYQLVLVDTPGYHR 177 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + + K++ND A++E ++LF + + I P D I LR PII V+ K D Sbjct: 178 PRTL-LGKRLNDMVREALSEVDVVLFCLPADQRIGPGDQFIARELRGIKRPIIAVATKCD 236 Query: 123 TRIAQRNFYEIYSL----DFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 +R + S+ ++ IV +S+ G L V+ + P +P + + Sbjct: 237 AVPRERVMKHLLSIEKLGEWAAIVPVSSVEGKGIDHLREVLAQTVPLSPPLYPEGDVTDE 296 Query: 179 KRN 181 R+ Sbjct: 297 SRD 299 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 43/78 (55%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +++VGRPNVGKSTL N L+G+ +T + TR ++ + N+ + + DT G +P Sbjct: 120 VSIVGRPNVGKSTLTNALVGHKIAITSGRPETTRHNIRGIVHGDNYQLVLVDTPGYHRPR 179 Query: 266 RITESLEQKTVKKSMQSV 283 + V++++ V Sbjct: 180 TLLGKRLNDMVREALSEV 197 >gi|122700799|emb|CAL87988.1| GTPase [Helicobacter pylori] Length = 170 Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 82/156 (52%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL + ++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARGRIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISAL 158 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARGRIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122702745|emb|CAL88562.1| GTPase [Helicobacter pylori] Length = 170 Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAARMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISALIDAIL 163 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + R + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLK----AARMSDLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|15674224|ref|NP_268399.1| tRNA modification GTPase TrmE [Lactococcus lactis subsp. lactis Il1403] gi|14195270|sp|Q9CDH8|MNME_LACLA RecName: Full=tRNA modification GTPase mnmE gi|12725311|gb|AAK06340.1|AE006453_4 GTP-binding protein ThdF [Lactococcus lactis subsp. lactis Il1403] gi|326407874|gb|ADZ64945.1| tRNA modification GTPase [Lactococcus lactis subsp. lactis CV56] Length = 455 Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 45/140 (32%), Positives = 83/140 (59%), Gaps = 6/140 (4%) Query: 187 ENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISW 246 EN+ S K K + + L+ A++GRPNVGKS+L+N+LL + + +G TRD ++ Sbjct: 207 ENLLSTAKRG-KILREGLKTAIIGRPNVGKSSLLNQLLREEKAIVTDIAGTTRDVITEFA 265 Query: 247 NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRI 306 N P+E+ DTAG+R+ + E++ V++S +++ + +++LDA+ +DL + Sbjct: 266 NIGGVPLELVDTAGIRETDDLVEAI---GVERSKKALAEADLVLLVLDASNELTDKDLEL 322 Query: 307 VDSVFNTGHAVVLALNKWDM 326 ++ N+ V+ LNK D+ Sbjct: 323 LELSKNSNRIVL--LNKTDL 340 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 43/117 (36%), Positives = 70/117 (59%), Gaps = 3/117 (2%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N+L++++ A+V + G TRD + A I GV +VDTAGI + + Sbjct: 226 AIIGRPNVGKSSLLNQLLREEKAIVTDIAGTTRDVITEFANIGGVPLELVDTAGIRETDD 285 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 A + ++++ A+ EA L+L ++D+ +T D + KN I++ NK D Sbjct: 286 LVEAIGV-ERSKKALAEADLVLLVLDASNELTDKDLELLEL--SKNSNRIVLLNKTD 339 >gi|122701703|emb|CAL88241.1| GTPase [Helicobacter pylori] Length = 170 Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISALIDAIL 163 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|116334862|ref|YP_796389.1| tRNA modification GTPase TrmE [Lactobacillus brevis ATCC 367] gi|122268459|sp|Q03N64|MNME_LACBA RecName: Full=tRNA modification GTPase mnmE gi|116100209|gb|ABJ65358.1| tRNA modification GTPase, TrmE [Lactobacillus brevis ATCC 367] Length = 464 Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 43/129 (33%), Positives = 78/129 (60%), Gaps = 5/129 (3%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L A+VGRPNVGKS+L+N LL ++ + +G TRD + N K P+++ D Sbjct: 220 KVLREGLATAIVGRPNVGKSSLLNHLLHEDKAIVTDVAGTTRDVIEEYVNVKGVPLKLID 279 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R T+ +E+ V++S +++ T + +++L+A+ P +D ++ + +T Sbjct: 280 TAGIRDT---TDKVEKIGVERSRKAINTADLVMLVLNASEPLTAEDEALLTATKDTQR-- 334 Query: 318 VLALNKWDM 326 +L LNK D+ Sbjct: 335 ILILNKTDL 343 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 49/159 (30%), Positives = 81/159 (50%), Gaps = 5/159 (3%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AIVG PNVGKS+L N L+ + A+V + G TRD + + GV ++DTAGI D + Sbjct: 229 AIVGRPNVGKSSLLNHLLHEDKAIVTDVAGTTRDVIEEYVNVKGVPLKLIDTAGIRDTTD 288 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 + K +++ AIN A L++ ++++ +T D A+ K+ I++ NK D + Sbjct: 289 -KVEKIGVERSRKAINTADLVMLVLNASEPLTAEDEAL--LTATKDTQRILILNKTDLPL 345 Query: 126 AQRNFYEIYSLDFKE-IVEISAEHDLGTSELHSVIFKIF 163 Q + + + I+E S G +L I +F Sbjct: 346 -QLDLAAVRQVAGDSPIIETSILQSTGMDQLEETIAHLF 383 >gi|317453515|emb|CBL87867.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDTLLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISAL 158 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDT 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122702265|emb|CAL88323.1| GTPase [Helicobacter pylori] Length = 170 Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGAPKSFNISVSHNRGISAL 158 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|242255948|gb|ACS88958.1| GTPase [Helicobacter pylori] Length = 170 Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYIVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISTL 158 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYIVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|59712693|ref|YP_205469.1| GTP-binding protein Era [Vibrio fischeri ES114] gi|59480794|gb|AAW86581.1| membrane-associated, 16S rRNA-binding GTPase [Vibrio fischeri ES114] Length = 321 Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 50/176 (28%), Positives = 90/176 (51%), Gaps = 6/176 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N+++ +K+++ P TR R+ G VDT G+ + Sbjct: 30 IAIVGRPNVGKSTLLNQILGQKISITSRKPQTTRHRIMGVDTDGDYQAIYVDTPGLHIEE 89 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN ++++ +L+LFL+D TP D + + L+K P +++ NK+D Sbjct: 90 KRAINRLMNRAANSSLSDVNLVLFLVDG-THWTPDDEMVLNKLKKSEFPTVLLVNKVDNV 148 Query: 125 IAQRNFYE-----IYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 +++ +DF ++V ISA+ +H ++ + + + P E + Sbjct: 149 KDKKDVMTHLQEMTEKMDFVDVVPISAKTGSNVDVVHKLVREYLPKAVHHFPEEYV 204 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 50/178 (28%), Positives = 82/178 (46%), Gaps = 9/178 (5%) Query: 189 ITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNW 248 SE KS V + IA+VGRPNVGKSTL+N++LG +T + TR + Sbjct: 13 FASEKKSEVSDNQHCGFIAIVGRPNVGKSTLLNQILGQKISITSRKPQTTRHRIMGVDTD 72 Query: 249 KNHPIEIFDTAGMR-KPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIV 307 ++ DT G+ + R L + S+ V + L+D T + D ++ Sbjct: 73 GDYQAIYVDTPGLHIEEKRAINRLMNRAANSSLSDVNLV---LFLVDGT-HWTPDDEMVL 128 Query: 308 DSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLD 365 + + + VL +NK D V DK +++ L+ K + + + IS +TG +D Sbjct: 129 NKLKKSEFPTVLLVNKVDNVKDKKDVMTHLQEMTEK----MDFVDVVPISAKTGSNVD 182 >gi|260101321|ref|ZP_05751558.1| GTP-binding protein Era [Lactobacillus helveticus DSM 20075] gi|260084906|gb|EEW69026.1| GTP-binding protein Era [Lactobacillus helveticus DSM 20075] gi|328465883|gb|EGF37066.1| GTPase Era [Lactobacillus helveticus MTCC 5463] Length = 301 Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 54/162 (33%), Positives = 90/162 (55%), Gaps = 8/162 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A++G PNVGKSTL N LV +K+A+ N P TR+R+ G + + VDT GI Sbjct: 11 VALLGRPNVGKSTLMNYLVGQKVAITSNKPQTTRNRISGIYTSDKMQVVFVDTPGIFK-P 69 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + M+ + ++N+ L+LF+++ + I D I + L++ +P+ +V NK+D + Sbjct: 70 HSKLDDYMDKASLSSLNDVDLVLFMVEPEE-IGKGDQYIANLLKEVKVPVFLVINKVD-Q 127 Query: 125 IAQRNFYEI----YSLD-FKEIVEISAEHDLGTSELHSVIFK 161 I I + L+ FKEI+ ISA +G +L + I K Sbjct: 128 IHPNKLLPIMDSYHKLEGFKEILPISATQGIGIEDLLNTINK 169 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 47/168 (27%), Positives = 83/168 (49%), Gaps = 13/168 (7%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP- 264 +A++GRPNVGKSTL+N L+G +T ++ TR+ +S + + DT G+ KP Sbjct: 11 VALLGRPNVGKSTLMNYLVGQKVAITSNKPQTTRNRISGIYTSDKMQVVFVDTPGIFKPH 70 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 S++ + ++ K S+ S+ + + +++ K D I + + V L +NK Sbjct: 71 SKLDDYMD----KASLSSLNDVDLVLFMVEPE-EIGKGDQYIANLLKEVKVPVFLVINKV 125 Query: 325 DMVS-DKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSV 371 D + +KL + D K G I IS G G++DL+ ++ Sbjct: 126 DQIHPNKLLPIMDSYHKL------EGFKEILPISATQGIGIEDLLNTI 167 >gi|122702391|emb|CAL88386.1| GTPase [Helicobacter pylori] Length = 170 Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFVGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGTPKSFNISVSHNRGISAL 158 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFVGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|292806662|gb|ADE42461.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDVNKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISAL 158 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDVNKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122702629|emb|CAL88504.1| GTPase [Helicobacter pylori] Length = 170 Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISAL 158 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 83/172 (48%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D +++ L +NK Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLNALNLNK 170 >gi|99905851|gb|ABF68620.1| YphC [Helicobacter pylori] gi|122700757|emb|CAL87967.1| GTPase [Helicobacter pylori] gi|122700893|emb|CAL88035.1| GTPase [Helicobacter pylori] gi|122701347|emb|CAL88063.1| GTPase [Helicobacter pylori] gi|122702159|emb|CAL88270.1| GTPase [Helicobacter pylori] gi|122702165|emb|CAL88273.1| GTPase [Helicobacter pylori] gi|122702243|emb|CAL88312.1| GTPase [Helicobacter pylori] gi|122702253|emb|CAL88317.1| GTPase [Helicobacter pylori] gi|122702257|emb|CAL88319.1| GTPase [Helicobacter pylori] gi|122702351|emb|CAL88366.1| GTPase [Helicobacter pylori] gi|122702359|emb|CAL88370.1| GTPase [Helicobacter pylori] gi|122702371|emb|CAL88376.1| GTPase [Helicobacter pylori] gi|122702385|emb|CAL88383.1| GTPase [Helicobacter pylori] gi|122702627|emb|CAL88503.1| GTPase [Helicobacter pylori] gi|242255952|gb|ACS88960.1| GTPase [Helicobacter pylori] gi|292806456|gb|ADE42358.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806540|gb|ADE42400.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806544|gb|ADE42402.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806630|gb|ADE42445.1| GTP-binding protein-like protein [Helicobacter pylori] gi|317452827|emb|CBL87849.1| GTP-binding protein-like protein [Helicobacter pylori] gi|317453507|emb|CBL87863.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISAL 158 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|325846391|ref|ZP_08169360.1| tRNA modification GTPase TrmE [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481575|gb|EGC84615.1| tRNA modification GTPase TrmE [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 454 Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 64/196 (32%), Positives = 97/196 (49%), Gaps = 12/196 (6%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 I+G PNVGKS+L N L+ + A+V + PG TRD + + + I DTAGI + + Sbjct: 225 IIGKPNVGKSSLLNVLLNENRAIVTDIPGTTRDSITEYINLGNLTLKINDTAGIRETHDE 284 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 + ELA A LI+ + D I D I L+ KN II+ +D++I+ Sbjct: 285 VEKIGVQRSKELA-KGADLIIAIFDRSREIDEEDKIILDLLKGKNAIIILNKIDLDSKIS 343 Query: 127 QRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN--NKRNEES 184 + +F + ++ I+E S G +L IF IF K N MI N ++R S Sbjct: 344 KEDFDKDFT-----IIETSMVSRDGIDKLEGAIFDIFDSKELNKESLMITNLRHERLLNS 398 Query: 185 PKENITSEGKSSVKNI 200 KE + +SS+K+I Sbjct: 399 SKEKL----QSSLKDI 410 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 41/131 (31%), Positives = 73/131 (55%), Gaps = 5/131 (3%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + ++G+PNVGKS+L+N LL NR + G TRDS++ N N ++I D Sbjct: 215 KLVKDGIETTIIGKPNVGKSSLLNVLLNENRAIVTDIPGTTRDSITEYINLGNLTLKIND 274 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ + +E+ V++S + + + I + D + +++D I+D + G Sbjct: 275 TAGIRETH---DEVEKIGVQRSKELAKGADLIIAIFDRSREIDEEDKIILDLL--KGKNA 329 Query: 318 VLALNKWDMVS 328 ++ LNK D+ S Sbjct: 330 IIILNKIDLDS 340 >gi|312148439|gb|ADQ31098.1| tRNA modification GTPase TrmE [Borrelia burgdorferi JD1] Length = 464 Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 41/122 (33%), Positives = 71/122 (58%), Gaps = 2/122 (1%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 + + G+ N GKS+LFN +KK ++V ++PG TRD + ++G++FN+ DTAG+ D Sbjct: 224 ALVLAGSVNAGKSSLFNLFLKKDRSIVSSYPGTTRDYIEASFELDGILFNLFDTAGLRDA 283 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 N + + +++ I EA L++++ID + +T D K N I+ V NK+D Sbjct: 284 DNF-VERLGIEKSNSLIKEASLVIYVIDVSSNLTKDDFLFID-SNKSNSKILFVLNKIDL 341 Query: 124 RI 125 +I Sbjct: 342 KI 343 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 52/188 (27%), Positives = 85/188 (45%), Gaps = 21/188 (11%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 + I + + + G N GKS+L N L +R + S G TRD + S+ +FD Sbjct: 217 EKIDNGVALVLAGSVNAGKSSLFNLFLKKDRSIVSSYPGTTRDYIEASFELDGILFNLFD 276 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R E L ++KS ++ I ++D + K D +DS + + Sbjct: 277 TAGLRDADNFVERL---GIEKSNSLIKEASLVIYVIDVSSNLTKDDFLFIDSN-KSNSKI 332 Query: 318 VLALNKWDMVSDKLNLLQDLRTKAI----------KNLPQIGDIYINTISG-----RTGE 362 + LNK D+ +K + + +R+K + KNL I DI + I R Sbjct: 333 LFVLNKIDLKINK-STEEFVRSKVLNSSNLIMISTKNLEGI-DILYDKIRALISYERVEI 390 Query: 363 GLDDLMVS 370 GLDD+++S Sbjct: 391 GLDDIIIS 398 >gi|242255878|gb|ACS88923.1| GTPase [Helicobacter pylori] Length = 170 Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 52/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G + L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGINALIDAIL 163 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122702571|emb|CAL88475.1| GTPase [Helicobacter pylori] Length = 170 Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKERERAYAFSSFGMPKSFNISVSHNRGISAL 158 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122702161|emb|CAL88271.1| GTPase [Helicobacter pylori] Length = 170 Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLSRERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISAL 158 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLSRERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|317453513|emb|CBL87866.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVLHNRGISALIDAIL 163 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ + R L D +++ L +N+ Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVLHNRGISALIDAILNALNLNQ 170 >gi|292806622|gb|ADE42441.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISAL 158 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 83/172 (48%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D ++S L +N+ Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLSALNLNQ 170 >gi|122702689|emb|CAL88534.1| GTPase [Helicobacter pylori] Length = 170 Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISAL 158 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 84/172 (48%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D ++S L++N+ Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLSALDLNQ 170 >gi|111115001|ref|YP_709619.1| tRNA modification GTPase TrmE [Borrelia afzelii PKo] gi|122956413|sp|Q0SNY5|MNME_BORAP RecName: Full=tRNA modification GTPase mnmE gi|110890275|gb|ABH01443.1| thiophene and furan oxidation protein [Borrelia afzelii PKo] Length = 464 Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 42/122 (34%), Positives = 72/122 (59%), Gaps = 2/122 (1%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+ + G+ N GKS+LFN +KK ++V ++PG TRD + ++G++FN+ DTAG+ D Sbjct: 224 TLVLAGSVNAGKSSLFNLFLKKDRSIVSSYPGTTRDYIEASFELDGILFNLFDTAGLRDA 283 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 N + + +++ I EA L++++ID + +T D K N I+ V NK+D Sbjct: 284 DNF-VERLGIEKSNSLIKEASLVIYVIDISSNLTRDDLLFID-SNKSNSKILFVLNKIDL 341 Query: 124 RI 125 +I Sbjct: 342 KI 343 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 54/187 (28%), Positives = 86/187 (45%), Gaps = 19/187 (10%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 + I + + + G N GKS+L N L +R + S G TRD + S+ +FD Sbjct: 217 EKIDHGITLVLAGSVNAGKSSLFNLFLKKDRSIVSSYPGTTRDYIEASFELDGILFNLFD 276 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R E L ++KS ++ I ++D + + DL +DS + + Sbjct: 277 TAGLRDADNFVERL---GIEKSNSLIKEASLVIYVIDISSNLTRDDLLFIDSN-KSNSKI 332 Query: 318 VLALNKWDMVSDK----------LNLLQDLRTKAIKNLPQIGDIY--INTISG--RTGEG 363 + LNK D+ +K LN +L +IKNL I +Y I T+ R G Sbjct: 333 LFVLNKIDLKINKSTEEFVRSSVLN-SSNLIMISIKNLEGIDILYDKIRTLISYERVEIG 391 Query: 364 LDDLMVS 370 LDD+++S Sbjct: 392 LDDIIIS 398 >gi|281411523|ref|YP_003345602.1| GTP-binding protein Era [Thermotoga naphthophila RKU-10] gi|281372626|gb|ADA66188.1| GTP-binding protein Era [Thermotoga naphthophila RKU-10] Length = 300 Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 91/169 (53%), Gaps = 9/169 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+ G+PNVGKST IN ++G ++ + TR+ ++ + K+ I DT G+ KP Sbjct: 8 VALAGKPNVGKSTFINAVMGRKVVIVSDKPQTTRNRINCIYTDKDSQIIFVDTPGIHKP- 66 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + VK ++Q+++ + + +LDA F K D + + V ++G ++A+NK D Sbjct: 67 --LHRLGEYMVKAAVQALKGVDLVLFMLDAADGFTKTDEHVAEIVNDSGTKTIIAVNKID 124 Query: 326 MVS-DKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 + +K + +L ++N+ + ++ IS GEG+ +++ + E Sbjct: 125 VAGEEKAKAVGELAKSMVENV-----VSVHYISALKGEGVFEVLEKIKE 168 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 1/119 (0%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+ G PNVGKST N ++ +K+ +V + P TR+R+ VDT GI Sbjct: 8 VALAGKPNVGKSTFINAVMGRKVVIVSDKPQTTRNRINCIYTDKDSQIIFVDTPGIHKPL 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + + + M A+ L+LF++D+ G T D + + II NK+D Sbjct: 68 H-RLGEYMVKAAVQALKGVDLVLFMLDAADGFTKTDEHVAEIVNDSGTKTIIAVNKIDV 125 >gi|122702791|emb|CAL88585.1| GTPase [Helicobacter pylori] Length = 170 Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERSYAFSSFGTPKSFNISVSHNRGISAL 158 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|304313413|ref|YP_003813011.1| tRNA modification GTPase [gamma proteobacterium HdN1] gi|301799146|emb|CBL47389.1| tRNA modification GTPase [gamma proteobacterium HdN1] Length = 464 Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 51/206 (24%), Positives = 106/206 (51%), Gaps = 17/206 (8%) Query: 167 YPNHPLEMIENNKRNEESPK-----ENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLIN 221 +P ++ + + + ++ K + I SE K V + + +R+ + G+PN GKS+L+N Sbjct: 181 FPEEEIDFLSDGRVQDQLNKLLAHLDAIFSEAKRGVL-LKEGMRVVLAGKPNAGKSSLLN 239 Query: 222 RLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQ 281 +L G +R + +G TRD + + P+ I DTAG+R+ + + +EQ+ ++++ Q Sbjct: 240 QLAGTDRAIVTPIAGTTRDVLHEHIHLDGMPLHISDTAGLRESA---DEVEQEGIRRAWQ 296 Query: 282 SVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVV-LALNKWDMVSDKLNLLQDLRTK 340 + + ++L DA+ + + NT H A+N+ +V +K++L + + Sbjct: 297 EIERADRILLLTDASEHLDLHPAKFWPEFINTLHERAPSAMNRMTIVRNKIDLADEAAGQ 356 Query: 341 A-IKNLPQIGDIYINTISGRTGEGLD 365 + N+P I + R+G+G+D Sbjct: 357 SEHDNIPTI------RLCARSGQGVD 376 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 1/88 (1%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + + G PN GKS+L N+L A+V G TRD L+ ++G+ +I DTAG+ + Sbjct: 224 VVLAGKPNAGKSSLLNQLAGTDRAIVTPIAGTTRDVLHEHIHLDGMPLHISDTAGLRESA 283 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDS 92 + + ++ + I A IL L D+ Sbjct: 284 D-EVEQEGIRRAWQEIERADRILLLTDA 310 >gi|298528962|ref|ZP_07016365.1| tRNA modification GTPase TrmE [Desulfonatronospira thiodismutans ASO3-1] gi|298510398|gb|EFI34301.1| tRNA modification GTPase TrmE [Desulfonatronospira thiodismutans ASO3-1] Length = 466 Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 68/244 (27%), Positives = 116/244 (47%), Gaps = 37/244 (15%) Query: 167 YPNHPLEMIENNKRNEESPKENITSEGKSSVKNISKPLR-------------IAVVGRPN 213 +P LE + P ++ S+V+ I + L+ + + GR N Sbjct: 188 FPEEDLECL---------PLADLAQRTNSAVREIDQLLKAFEQNRVFREGALVVLAGRVN 238 Query: 214 VGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQ 273 GKS+L+N LLG R + S G TRD + + N P+ + DTAG R+P+R + +E Sbjct: 239 AGKSSLMNALLGRERAIVTSIPGTTRDYLEEAINLDGLPVRLVDTAG-RRPTR--DKIEM 295 Query: 274 KTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNL 333 ++ Q + + I++LDA +DL I++ + + +VLA+NK D+VS Sbjct: 296 MGLETGRQLISRSDLCILVLDAGQEPAPEDLDILEEI--SPGKLVLAVNKQDLVSGTPGW 353 Query: 334 LQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVL-EINKLWKTRITTSYLNSWLQ 392 +QDL+ K + ++T S G GL++L ++ I + + T+S + Q Sbjct: 354 VQDLKDKGLD--------LVHT-SATLGHGLENLTRAIRSRILGEKRPQATSSLAPNLRQ 404 Query: 393 KTQL 396 KT L Sbjct: 405 KTAL 408 Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 34/55 (61%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAG 59 + + G N GKS+L N L+ ++ A+V + PG TRD L ++G+ +VDTAG Sbjct: 231 VVLAGRVNAGKSSLMNALLGRERAIVTSIPGTTRDYLEEAINLDGLPVRLVDTAG 285 >gi|4467659|emb|CAB37781.1| GTP-binding protein homologue [Helicobacter pylori] Length = 170 Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISTLIDAIL 163 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|320354718|ref|YP_004196057.1| tRNA modification GTPase trmE [Desulfobulbus propionicus DSM 2032] gi|320123220|gb|ADW18766.1| tRNA modification GTPase trmE [Desulfobulbus propionicus DSM 2032] Length = 463 Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 53/158 (33%), Positives = 85/158 (53%), Gaps = 5/158 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + I G PNVGKS+L N L++++ A+V PG TRD + + I G+ ++VDTAGI Sbjct: 227 VVITGQPNVGKSSLLNTLLQEERALVTPLPGTTRDTIEERIAIRGIPLHLVDTAGIRLHH 286 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + A + ++ + +A L+LFL+D++ G D + L N P +IV NK D Sbjct: 287 DPVEALGI-ERARQKVEQADLVLFLVDAQVGWRETDEELYRSL--GNKPHVIVVNKRDL- 342 Query: 125 IAQRNFYEIYS-LDFKEIVEISAEHDLGTSELHSVIFK 161 + I+S K++V ISA+ G EL +++ Sbjct: 343 ATKEQIASIFSRFSGKKVVAISAKQQEGIDELQEAVYQ 380 Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 51/195 (26%), Positives = 93/195 (47%), Gaps = 29/195 (14%) Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 P E + + + K + + +++ + G+PNVGKS+L+N LL R L G TRD++ Sbjct: 206 GPLERLIAMAEQG-KIVREGVKVVITGQPNVGKSSLLNTLLQEERALVTPLPGTTRDTIE 264 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + P+ + DTAG+R E+L ++++ Q V + + L+DA + + + D Sbjct: 265 ERIAIRGIPLHLVDTAGIRLHHDPVEAL---GIERARQKVEQADLVLFLVDAQVGWRETD 321 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIY-------INTI 356 + S+ N H +V +NK D+ + + QI I+ + I Sbjct: 322 EELYRSLGNKPHVIV--VNKRDLATKE----------------QIASIFSRFSGKKVVAI 363 Query: 357 SGRTGEGLDDLMVSV 371 S + EG+D+L +V Sbjct: 364 SAKQQEGIDELQEAV 378 >gi|312144699|ref|YP_003996145.1| tRNA modification GTPase TrmE [Halanaerobium sp. 'sapolanicus'] gi|311905350|gb|ADQ15791.1| tRNA modification GTPase TrmE [Halanaerobium sp. 'sapolanicus'] Length = 464 Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 43/116 (37%), Positives = 69/116 (59%), Gaps = 3/116 (2%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PNVGKS+L N +++K A+V + PG TRD + + G+ I+DTAGI + + Sbjct: 231 IVGKPNVGKSSLLNYFLEEKRAIVTDIPGTTRDVIEEYVNLKGIPLKIIDTAGIRETAD- 289 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + K ++T + +A L+LF++D G+T D I ++ K P+I++ NK D Sbjct: 290 KVEKIGVERTRKSAEKADLVLFMLDISQGLTEEDLQIYKLIKDK--PVIVIVNKTD 343 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 70/123 (56%), Gaps = 5/123 (4%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 L+ +VG+PNVGKS+L+N L R + G TRD + N K P++I DTAG+R+ Sbjct: 227 LKTVIVGKPNVGKSSLLNYFLEEKRAIVTDIPGTTRDVIEEYVNLKGIPLKIIDTAGIRE 286 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 + + +E+ V+++ +S + + +LD + ++DL+I + + V++ +NK Sbjct: 287 TA---DKVEKIGVERTRKSAEKADLVLFMLDISQGLTEEDLQIYKLIKD--KPVIVIVNK 341 Query: 324 WDM 326 D+ Sbjct: 342 TDL 344 >gi|293189528|ref|ZP_06608248.1| GTP-binding protein Era [Actinomyces odontolyticus F0309] gi|292821618|gb|EFF80557.1| GTP-binding protein Era [Actinomyces odontolyticus F0309] Length = 412 Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 56/183 (30%), Positives = 89/183 (48%), Gaps = 9/183 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFN--IVDTAGIAD 62 ++IVG PNVGKSTL N LV K+A+ P TR + G I++G + +VDT G Sbjct: 120 VSIVGRPNVGKSTLTNALVGHKIAITSGRPETTRHNIRG--IVHGDNYQLVLVDTPGYHR 177 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + + K++ND A++E ++LF + + I P D I LR PII V+ K D Sbjct: 178 PRTL-LGKRLNDMVREALSEVDVVLFCLPADQRIGPGDQFIARELRGIKRPIIAVATKCD 236 Query: 123 TRIAQRNFYEIYSL----DFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 +R + S+ ++ IV +S+ G L V+ + P +P + + Sbjct: 237 AVPRERVMKHLLSIEKLGEWAAIVPVSSVEGKGIDHLREVLAQTVPLSPPLYPEGDVTDE 296 Query: 179 KRN 181 R+ Sbjct: 297 SRD 299 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 43/78 (55%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +++VGRPNVGKSTL N L+G+ +T + TR ++ + N+ + + DT G +P Sbjct: 120 VSIVGRPNVGKSTLTNALVGHKIAITSGRPETTRHNIRGIVHGDNYQLVLVDTPGYHRPR 179 Query: 266 RITESLEQKTVKKSMQSV 283 + V++++ V Sbjct: 180 TLLGKRLNDMVREALSEV 197 >gi|122700643|emb|CAL87910.1| GTPase [Helicobacter pylori] Length = 170 Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERSYAFSSFGAPKSFNISVSHNRGISTL 158 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122701649|emb|CAL88214.1| GTPase [Helicobacter pylori] Length = 170 Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISAL 158 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122702177|emb|CAL88279.1| GTPase [Helicobacter pylori] Length = 170 Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 52/157 (33%), Positives = 83/157 (52%), Gaps = 6/157 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 ++ TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+ Sbjct: 6 ILKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGM 65 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVS 118 A G ++K++ A + LIL+++D K+ P D + F + K N +V Sbjct: 66 AKG--ALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVI 121 Query: 119 NKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 NK+D + Y S + IS H+ G S L Sbjct: 122 NKIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISAL 158 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKGA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122700797|emb|CAL87987.1| GTPase [Helicobacter pylori] gi|122700865|emb|CAL88021.1| GTPase [Helicobacter pylori] gi|122701331|emb|CAL88055.1| GTPase [Helicobacter pylori] gi|122702441|emb|CAL88411.1| GTPase [Helicobacter pylori] gi|122702529|emb|CAL88454.1| GTPase [Helicobacter pylori] gi|292806614|gb|ADE42437.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISALIDAIL 163 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|317453511|emb|CBL87865.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERSYAFSSFGIPKSFNISVSHNRGISALIDAIL 163 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|291546834|emb|CBL19942.1| GTP-binding protein Era [Ruminococcus sp. SR1/5] Length = 302 Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 56/192 (29%), Positives = 93/192 (48%), Gaps = 11/192 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKSTL N L+ +K+A+ N P TR+++ + +DT GI K Sbjct: 10 VAIIGRPNVGKSTLMNHLIGQKIAITSNKPQTTRNKIQTVYTCDEGQIVFLDTPGIHKAK 69 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N + + M E + E I++L++ + + I L+K +P+I++ NK+DT Sbjct: 70 N-KLGEYMVQVAERTLKEVDAIMWLVEPSTFVGAGERHIAEQLQKVGVPVILIINKIDTV 128 Query: 125 IAQRNFYEIYS----LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + I + DF EI+ SA T ++ IFK P P+ E+ Sbjct: 129 KKEELLPAIDTYRKICDFAEIIPCSALRGKNTQDIIPSIFKYL----PYGPMFYDEDTVT 184 Query: 181 NEESPKENITSE 192 ++ P+ I +E Sbjct: 185 DQ--PQRQIAAE 194 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/122 (27%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKSTL+N L+G +T ++ TR+ + + I DT G+ K Sbjct: 10 VAIIGRPNVGKSTLMNHLIGQKIAITSNKPQTTRNKIQTVYTCDEGQIVFLDTPGIHKAK 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + V+ + ++++ + + L++ + + I + + G V+L +NK D Sbjct: 70 ---NKLGEYMVQVAERTLKEVDAIMWLVEPSTFVGAGERHIAEQLQKVGVPVILIINKID 126 Query: 326 MV 327 V Sbjct: 127 TV 128 >gi|122700903|emb|CAL88040.1| GTPase [Helicobacter pylori] Length = 170 Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISAL 158 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|237736115|ref|ZP_04566596.1| thiophene and furan oxidation protein ThdF [Fusobacterium mortiferum ATCC 9817] gi|229421826|gb|EEO36873.1| thiophene and furan oxidation protein ThdF [Fusobacterium mortiferum ATCC 9817] Length = 456 Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 44/129 (34%), Positives = 74/129 (57%), Gaps = 5/129 (3%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K I + ++ A+VG+PNVGKS+L+N +L R + G TRD + N K P+ + D Sbjct: 215 KMIKEGIKTAIVGKPNVGKSSLLNSVLREERAIVTHIPGTTRDVIEEVVNLKGIPLILVD 274 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+RK I E++ V+KS + + + + ++D + E++D++I +S+ V Sbjct: 275 TAGIRKTDDIVENI---GVEKSKKMIENADLILFVIDGSRELEEEDIKIHESI--NSEKV 329 Query: 318 VLALNKWDM 326 + LNK DM Sbjct: 330 IGILNKIDM 338 Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 49/156 (31%), Positives = 82/156 (52%), Gaps = 8/156 (5%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AIVG PNVGKS+L N +++++ A+V + PG TRD + + G+ +VDTAGI K Sbjct: 224 AIVGKPNVGKSSLLNSVLREERAIVTHIPGTTRDVIEEVVNLKGIPLILVDTAGIR--KT 281 Query: 66 CSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I + + ++++ I A LILF+ID + D I + + + I+ M+ + Sbjct: 282 DDIVENIGVEKSKKMIENADLILFVIDGSRELEEEDIKIHESINSEKVIGILNKIDMERK 341 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 + +I K +EISA ++G E+ I+ Sbjct: 342 VDLSKLTKI-----KNWIEISAMKNIGIDEMEDKIY 372 >gi|4467661|emb|CAB37782.1| GTP-binding protein homologue [Helicobacter pylori] Length = 170 Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 84/162 (51%), Gaps = 6/162 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 G ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 KG--ALLSKEIKAINLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 K+D + Y S + IS H+ G + L I + Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGINALIDAILR 164 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKGA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKAINLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|50085654|ref|YP_047164.1| GTP-binding protein Era [Acinetobacter sp. ADP1] gi|49531630|emb|CAG69342.1| GTP-binding protein,16S rRNA-binding, ribosome-associated GTPase [Acinetobacter sp. ADP1] Length = 345 Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 52/176 (29%), Positives = 88/176 (50%), Gaps = 6/176 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N L+ +K+++ P TR ++ G VDT G+ + Sbjct: 45 VAIVGRPNVGKSTLMNHLLGQKLSITSRKPQTTRHKIVGIDSREKSQAVYVDTPGMHKKE 104 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I K MN A+ + +L+LF++D T D + L+ +P+I+V NK+DT Sbjct: 105 VRAINKMMNRAAHSALRDVNLVLFVVDIHKW-TQNDDLVLEKLKNAEMPVILVINKVDTL 163 Query: 125 IAQRNFYEIYS-----LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 +++ + ++F EI+ +SA +L + K + P + L+ I Sbjct: 164 EDKKSLLPLIQERTKLMNFAEIIPVSALRGANLDQLRDTVEKYLPFQPPLYSLDQI 219 Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 41/130 (31%), Positives = 69/130 (53%), Gaps = 5/130 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS-VSISWNWKNHPIEIFDTAGMRKP 264 +A+VGRPNVGKSTL+N LLG +T + TR V I K+ + + DT GM K Sbjct: 45 VAIVGRPNVGKSTLMNHLLGQKLSITSRKPQTTRHKIVGIDSREKSQAVYV-DTPGMHK- 102 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 + ++ + + + ++R + ++D + DL +++ + N V+L +NK Sbjct: 103 -KEVRAINKMMNRAAHSALRDVNLVLFVVDIHKWTQNDDL-VLEKLKNAEMPVILVINKV 160 Query: 325 DMVSDKLNLL 334 D + DK +LL Sbjct: 161 DTLEDKKSLL 170 >gi|260775207|ref|ZP_05884105.1| GTP-binding protein Era [Vibrio coralliilyticus ATCC BAA-450] gi|260608908|gb|EEX35070.1| GTP-binding protein Era [Vibrio coralliilyticus ATCC BAA-450] Length = 324 Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 48/150 (32%), Positives = 81/150 (54%), Gaps = 8/150 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL NR++ +K+++ P TR R+ G VDT G+ + Sbjct: 33 VAIVGRPNVGKSTLLNRILGQKISITSRKPQTTRHRIMGVDTEGDYQAIYVDTPGLHIEE 92 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN ++++ +L+ FL+D T D + + L+K N P+++ NK+D Sbjct: 93 KRAINRLMNRAANSSLSDVNLVFFLVDG-THWTKDDEMVLTKLQKSNFPVVLCVNKVDN- 150 Query: 125 IAQRNFYEIYSLD------FKEIVEISAEH 148 + RN ++ +D F ++V ISA+ Sbjct: 151 VQDRNDVMLHMMDMSKKMEFVDVVPISAKQ 180 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 73/162 (45%), Gaps = 5/162 (3%) Query: 174 MIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGS 233 M ++ NE +S G+ S +A+VGRPNVGKSTL+NR+LG +T Sbjct: 1 MTDSTDNNEFDIDAFFSSSGEVSSPENQHCGFVAIVGRPNVGKSTLLNRILGQKISITSR 60 Query: 234 QSGITRDSVSISWNWKNHPIEIFDTAGMR-KPSRITESLEQKTVKKSMQSVRTCETTIVL 292 + TR + ++ DT G+ + R L + S+ V L Sbjct: 61 KPQTTRHRIMGVDTEGDYQAIYVDTPGLHIEEKRAINRLMNRAANSSLSDVNLV---FFL 117 Query: 293 LDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLL 334 +D T + K D ++ + + VVL +NK D V D+ +++ Sbjct: 118 VDGT-HWTKDDEMVLTKLQKSNFPVVLCVNKVDNVQDRNDVM 158 >gi|18075603|emb|CAD11197.1| GTP-binding protein [Helicobacter pylori] gi|122700743|emb|CAL87960.1| GTPase [Helicobacter pylori] gi|122700913|emb|CAL88045.1| GTPase [Helicobacter pylori] gi|122702779|emb|CAL88579.1| GTPase [Helicobacter pylori] Length = 170 Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERSYAFSSFGMPKSFNISVSHNRGISAL 158 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|292806482|gb|ADE42371.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 52/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L + Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISTLIDAVL 163 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|225552070|ref|ZP_03773010.1| tRNA modification GTPase TrmE [Borrelia sp. SV1] gi|225371068|gb|EEH00498.1| tRNA modification GTPase TrmE [Borrelia sp. SV1] Length = 464 Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 41/122 (33%), Positives = 71/122 (58%), Gaps = 2/122 (1%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 + + G+ N GKS+LFN +KK ++V ++PG TRD + ++G++FN+ DTAG+ D Sbjct: 224 ALVLAGSVNAGKSSLFNLFLKKDRSIVSSYPGTTRDYIEASFELDGILFNLFDTAGLRDA 283 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 N + + +++ I EA L++++ID + +T D K N I+ V NK+D Sbjct: 284 DNF-VERLGIEKSNSLIKEASLVIYVIDVSSNLTKDDFLFID-SNKSNSKILFVLNKIDL 341 Query: 124 RI 125 +I Sbjct: 342 KI 343 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 52/188 (27%), Positives = 85/188 (45%), Gaps = 21/188 (11%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 + I + + + G N GKS+L N L +R + S G TRD + S+ +FD Sbjct: 217 EKIDHGVALVLAGSVNAGKSSLFNLFLKKDRSIVSSYPGTTRDYIEASFELDGILFNLFD 276 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R E L ++KS ++ I ++D + K D +DS + + Sbjct: 277 TAGLRDADNFVERL---GIEKSNSLIKEASLVIYVIDVSSNLTKDDFLFIDSN-KSNSKI 332 Query: 318 VLALNKWDMVSDKLNLLQDLRTKAI----------KNLPQIGDIYINTISG-----RTGE 362 + LNK D+ +K + + +R+K + KNL I DI + I R Sbjct: 333 LFVLNKIDLKINK-STEEFVRSKVLNSSNLIMISTKNLEGI-DILYDKIRALISYERVEI 390 Query: 363 GLDDLMVS 370 GLDD+++S Sbjct: 391 GLDDIIIS 398 >gi|216263825|ref|ZP_03435819.1| tRNA modification GTPase TrmE [Borrelia afzelii ACA-1] gi|215979869|gb|EEC20691.1| tRNA modification GTPase TrmE [Borrelia afzelii ACA-1] Length = 464 Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 42/122 (34%), Positives = 72/122 (59%), Gaps = 2/122 (1%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+ + G+ N GKS+LFN +KK ++V ++PG TRD + ++G++FN+ DTAG+ D Sbjct: 224 TLVLAGSVNAGKSSLFNLFLKKDRSIVSSYPGTTRDYIEASFELDGILFNLFDTAGLRDA 283 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 N + + +++ I EA L++++ID + +T D K N I+ V NK+D Sbjct: 284 DNF-VERLGIEKSNSLIKEASLVIYVIDISSNLTRDDLLFID-SNKSNSKILFVLNKIDL 341 Query: 124 RI 125 +I Sbjct: 342 KI 343 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 54/187 (28%), Positives = 86/187 (45%), Gaps = 19/187 (10%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 + I + + + G N GKS+L N L +R + S G TRD + S+ +FD Sbjct: 217 EKIDHGITLVLAGSVNAGKSSLFNLFLKKDRSIVSSYPGTTRDYIEASFELDGILFNLFD 276 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R E L ++KS ++ I ++D + + DL +DS + + Sbjct: 277 TAGLRDADNFVERL---GIEKSNSLIKEASLVIYVIDISSNLTRDDLLFIDSN-KSNSKI 332 Query: 318 VLALNKWDMVSDK----------LNLLQDLRTKAIKNLPQIGDIY--INTISG--RTGEG 363 + LNK D+ +K LN +L +IKNL I +Y I T+ R G Sbjct: 333 LFVLNKIDLKINKSTEEFVRSSVLN-SSNLIMISIKNLEGIDILYDKIRTLISYERVEIG 391 Query: 364 LDDLMVS 370 LDD+++S Sbjct: 392 LDDIIIS 398 >gi|122702537|emb|CAL88458.1| GTPase [Helicobacter pylori] Length = 170 Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + ++G ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALSGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISAL 158 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALSGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122700737|emb|CAL87957.1| GTPase [Helicobacter pylori] Length = 170 Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYIVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISAL 158 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYIVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|309804827|ref|ZP_07698889.1| tRNA modification GTPase TrmE [Lactobacillus iners LactinV 09V1-c] gi|309809783|ref|ZP_07703637.1| tRNA modification GTPase TrmE [Lactobacillus iners SPIN 2503V10-D] gi|308165766|gb|EFO67987.1| tRNA modification GTPase TrmE [Lactobacillus iners LactinV 09V1-c] gi|308169962|gb|EFO72001.1| tRNA modification GTPase TrmE [Lactobacillus iners SPIN 2503V10-D] Length = 461 Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 57/176 (32%), Positives = 90/176 (51%), Gaps = 4/176 (2%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AIVG PNVGKS+L N L K++ A+V N G TRD L + G++ ++DTAGI + Sbjct: 228 AIVGRPNVGKSSLLNYLSKEEKAIVTNIAGTTRDTLEEYVSLKGILLKLIDTAGIRQTDD 287 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 + K ++++ AI E+ L+L LI+S +T D + + K I++ NK D ++ Sbjct: 288 I-VEKIGVERSKRAITESDLVLLLINSSEELTEEDQKLLKLTQDK--KRIVILNKAD-QV 343 Query: 126 AQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 A+ +I + IV IS L I +F Q + E++ N+R Sbjct: 344 AKITKKDIQKITDSPIVTISVLKKQNMIGLEEAIKSLFLQGITDSKSEVMVTNQRQ 399 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 37/131 (28%), Positives = 74/131 (56%), Gaps = 5/131 (3%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + L A+VGRPNVGKS+L+N L + + + +G TRD++ + K +++ D Sbjct: 219 KVVRSGLATAIVGRPNVGKSSLLNYLSKEEKAIVTNIAGTTRDTLEEYVSLKGILLKLID 278 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ I E + V++S +++ + ++L++++ ++D +++ + V Sbjct: 279 TAGIRQTDDIVEKI---GVERSKRAITESDLVLLLINSSEELTEEDQKLLKLTQDKKRIV 335 Query: 318 VLALNKWDMVS 328 + LNK D V+ Sbjct: 336 I--LNKADQVA 344 >gi|225549804|ref|ZP_03770768.1| tRNA modification GTPase TrmE [Borrelia burgdorferi 118a] gi|225369612|gb|EEG99061.1| tRNA modification GTPase TrmE [Borrelia burgdorferi 118a] Length = 464 Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 41/122 (33%), Positives = 71/122 (58%), Gaps = 2/122 (1%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 + + G+ N GKS+LFN +KK ++V ++PG TRD + ++G++FN+ DTAG+ D Sbjct: 224 ALVLAGSVNAGKSSLFNLFLKKDRSIVSSYPGTTRDYIEASFELDGILFNLFDTAGLRDA 283 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 N + + +++ I EA L++++ID + +T D K N I+ V NK+D Sbjct: 284 DNF-VERLGIEKSNSLIKEASLVIYVIDVSSNLTKDDFLFID-SNKSNSKILFVLNKIDL 341 Query: 124 RI 125 +I Sbjct: 342 KI 343 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 51/188 (27%), Positives = 85/188 (45%), Gaps = 21/188 (11%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 + I + + + G N GKS+L N L +R + S G TRD + S+ +FD Sbjct: 217 EKIDNGVALVLAGSVNAGKSSLFNLFLKKDRSIVSSYPGTTRDYIEASFELDGILFNLFD 276 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R E L ++KS ++ I ++D + K D +DS + + Sbjct: 277 TAGLRDADNFVERL---GIEKSNSLIKEASLVIYVIDVSSNLTKDDFLFIDSN-KSNSKI 332 Query: 318 VLALNKWDMVSDKLNLLQDLRTKAI----------KNLPQIGDIYINTISG-----RTGE 362 + LNK D+ +K + + +R+K + KNL I DI + I R Sbjct: 333 LFVLNKIDLKINK-STEEFVRSKVLNSSNLIMISTKNLEGI-DILYDKIRALISYERVEI 390 Query: 363 GLDDLMVS 370 G+DD+++S Sbjct: 391 GVDDIIIS 398 >gi|122702439|emb|CAL88410.1| GTPase [Helicobacter pylori] Length = 170 Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKTLNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISAL 158 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 67/121 (55%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ E KT+ ++++ + + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSK--EIKTL--NLKAAQMSDLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122701627|emb|CAL88203.1| GTPase [Helicobacter pylori] Length = 170 Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKEQSYAFSSFGIPKSFNISVSHNRGISAL 158 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122702171|emb|CAL88276.1| GTPase [Helicobacter pylori] Length = 170 Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLSRERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISAL 158 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLSRERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122700709|emb|CAL87943.1| GTPase [Helicobacter pylori] Length = 170 Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKAINLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISAL 158 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKAINLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|292806674|gb|ADE42467.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 52/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ +++++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSQEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREIFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ +F L +NK Sbjct: 70 LLSQEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREIFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122702725|emb|CAL88552.1| GTPase [Helicobacter pylori] Length = 170 Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKVLNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKERERAYAFSSFGIPKSFNISVSHNRGISAL 158 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKVLNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|300868767|ref|ZP_07113378.1| tRNA modification GTPase mnmE [Oscillatoria sp. PCC 6506] gi|300333328|emb|CBN58570.1| tRNA modification GTPase mnmE [Oscillatoria sp. PCC 6506] Length = 464 Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 44/118 (37%), Positives = 70/118 (59%), Gaps = 3/118 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKS+L N + A+V + PG TRD + Q ++ G+ ++DTAGI + + Sbjct: 228 VAIVGRPNVGKSSLLNAWSRCDRAIVTDLPGTTRDVVESQLVVGGIPIQVLDTAGIRETE 287 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + + K ++ A A L+L ID+ AG T D I + + K+ P+I++ NK+D Sbjct: 288 D-RVEKIGVARSRQAAESADLVLLAIDAAAGWTEGDREI--YQQVKHRPVILIVNKVD 342 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 46/133 (34%), Positives = 75/133 (56%), Gaps = 6/133 (4%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 L++A+VGRPNVGKS+L+N +R + G TRD V PI++ DTAG+R+ Sbjct: 226 LKVAIVGRPNVGKSSLLNAWSRCDRAIVTDLPGTTRDVVESQLVVGGIPIQVLDTAGIRE 285 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 + +E+ V +S Q+ + + ++ +DA + + D I V + V+L +NK Sbjct: 286 TE---DRVEKIGVARSRQAAESADLVLLAIDAAAGWTEGDREIYQQVKH--RPVILIVNK 340 Query: 324 WDMVSDK-LNLLQ 335 D+VS+K L +LQ Sbjct: 341 VDLVSEKDLEILQ 353 >gi|242255910|gb|ACS88939.1| GTPase [Helicobacter pylori] Length = 170 Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKVLNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 84/172 (48%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKVLNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D ++S L++NK Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSTLDLNK 170 >gi|122702521|emb|CAL88450.1| GTPase [Helicobacter pylori] gi|122702585|emb|CAL88482.1| GTPase [Helicobacter pylori] Length = 170 Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGAPKSFNISVSHNRGISAL 158 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122701357|emb|CAL88068.1| GTPase [Helicobacter pylori] gi|122701537|emb|CAL88158.1| GTPase [Helicobacter pylori] gi|292806600|gb|ADE42430.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISAL 158 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|18075563|emb|CAD11177.1| GTP-binding protein [Helicobacter pylori] gi|122702795|emb|CAL88587.1| GTPase [Helicobacter pylori] Length = 170 Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERSYAFSSFGVPKSFNISVSHNRGISAL 158 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122702205|emb|CAL88293.1| GTPase [Helicobacter pylori] Length = 170 Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKAINLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERSYAFSSFGMPKSFNISVSHNRGISAL 158 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKAINLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|1199801|emb|CAA64971.1| thdF [Borrelia burgdorferi] gi|2689169|emb|CAA06004.1| thdF [Borrelia burgdorferi] Length = 463 Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 41/122 (33%), Positives = 71/122 (58%), Gaps = 2/122 (1%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 + + G+ N GKS+LFN +KK ++V ++PG TRD + ++G++FN+ DTAG+ D Sbjct: 223 ALVLAGSVNAGKSSLFNLFLKKDRSIVSSYPGTTRDYIEASFELDGILFNLFDTAGLRDA 282 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 N + + +++ I EA L++++ID + +T D K N I+ V NK+D Sbjct: 283 DNF-VERLGIEKSNSLIKEASLVIYVIDVSSNLTKDDFLFID-SNKSNSKILFVLNKIDL 340 Query: 124 RI 125 +I Sbjct: 341 KI 342 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 52/188 (27%), Positives = 85/188 (45%), Gaps = 21/188 (11%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 + I + + + G N GKS+L N L +R + S G TRD + S+ +FD Sbjct: 216 EKIDNGVALVLAGSVNAGKSSLFNLFLKKDRSIVSSYPGTTRDYIEASFELDGILFNLFD 275 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R E L ++KS ++ I ++D + K D +DS + + Sbjct: 276 TAGLRDADNFVERL---GIEKSNSLIKEASLVIYVIDVSSNLTKDDFLFIDSN-KSNSKI 331 Query: 318 VLALNKWDMVSDKLNLLQDLRTKAI----------KNLPQIGDIYINTISG-----RTGE 362 + LNK D+ +K + + +R+K + KNL I DI + I R Sbjct: 332 LFVLNKIDLKINK-STEEFVRSKVLNSSNLIMISTKNLEGI-DILYDKIRALISYERVEI 389 Query: 363 GLDDLMVS 370 GLDD+++S Sbjct: 390 GLDDIIIS 397 >gi|122702435|emb|CAL88408.1| GTPase [Helicobacter pylori] Length = 170 Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERSYAFSSFGAPKSFNISVSHNRGISAL 158 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 85/172 (49%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R+ A + I+ R L D ++S L++N+ Sbjct: 125 D--NDK----EKERSYAFSSFGAPKSFNISVSHNRGISALIDAVLSALDLNQ 170 >gi|122700857|emb|CAL88017.1| GTPase [Helicobacter pylori] Length = 170 Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYVFSSFGIPKSFNISVSHNRGISAL 158 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|18075579|emb|CAD11185.1| GTP-binding protein [Helicobacter pylori] gi|122702797|emb|CAL88588.1| GTPase [Helicobacter pylori] Length = 170 Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISAL 158 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|15594524|ref|NP_212313.1| tRNA modification GTPase TrmE [Borrelia burgdorferi B31] gi|195941910|ref|ZP_03087292.1| tRNA modification GTPase TrmE [Borrelia burgdorferi 80a] gi|216264582|ref|ZP_03436574.1| tRNA modification GTPase TrmE [Borrelia burgdorferi 156a] gi|218249887|ref|YP_002374707.1| tRNA modification GTPase TrmE [Borrelia burgdorferi ZS7] gi|221217543|ref|ZP_03589013.1| tRNA modification GTPase TrmE [Borrelia burgdorferi 72a] gi|223889248|ref|ZP_03623836.1| tRNA modification GTPase TrmE [Borrelia burgdorferi 64b] gi|224532855|ref|ZP_03673470.1| tRNA modification GTPase TrmE [Borrelia burgdorferi WI91-23] gi|225548539|ref|ZP_03769587.1| tRNA modification GTPase TrmE [Borrelia burgdorferi 94a] gi|226320914|ref|ZP_03796465.1| tRNA modification GTPase TrmE [Borrelia burgdorferi 29805] gi|226321497|ref|ZP_03797023.1| tRNA modification GTPase TrmE [Borrelia burgdorferi Bol26] gi|3915895|sp|P53364|MNME_BORBU RecName: Full=tRNA modification GTPase mnmE gi|226704779|sp|B7J1B2|MNME_BORBZ RecName: Full=tRNA modification GTPase mnmE gi|2688058|gb|AAC66556.1| thiophene and furan oxidation protein (thdF) [Borrelia burgdorferi B31] gi|215981055|gb|EEC21862.1| tRNA modification GTPase TrmE [Borrelia burgdorferi 156a] gi|218165075|gb|ACK75136.1| tRNA modification GTPase TrmE [Borrelia burgdorferi ZS7] gi|221192606|gb|EEE18823.1| tRNA modification GTPase TrmE [Borrelia burgdorferi 72a] gi|223885281|gb|EEF56383.1| tRNA modification GTPase TrmE [Borrelia burgdorferi 64b] gi|224512244|gb|EEF82630.1| tRNA modification GTPase TrmE [Borrelia burgdorferi WI91-23] gi|225370802|gb|EEH00237.1| tRNA modification GTPase TrmE [Borrelia burgdorferi 94a] gi|226232686|gb|EEH31439.1| tRNA modification GTPase TrmE [Borrelia burgdorferi Bol26] gi|226233686|gb|EEH32416.1| tRNA modification GTPase TrmE [Borrelia burgdorferi 29805] gi|312149716|gb|ADQ29787.1| tRNA modification GTPase TrmE [Borrelia burgdorferi N40] Length = 464 Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 41/122 (33%), Positives = 71/122 (58%), Gaps = 2/122 (1%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 + + G+ N GKS+LFN +KK ++V ++PG TRD + ++G++FN+ DTAG+ D Sbjct: 224 ALVLAGSVNAGKSSLFNLFLKKDRSIVSSYPGTTRDYIEASFELDGILFNLFDTAGLRDA 283 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 N + + +++ I EA L++++ID + +T D K N I+ V NK+D Sbjct: 284 DNF-VERLGIEKSNSLIKEASLVIYVIDVSSNLTKDDFLFID-SNKSNSKILFVLNKIDL 341 Query: 124 RI 125 +I Sbjct: 342 KI 343 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 52/188 (27%), Positives = 85/188 (45%), Gaps = 21/188 (11%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 + I + + + G N GKS+L N L +R + S G TRD + S+ +FD Sbjct: 217 EKIDNGVALVLAGSVNAGKSSLFNLFLKKDRSIVSSYPGTTRDYIEASFELDGILFNLFD 276 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R E L ++KS ++ I ++D + K D +DS + + Sbjct: 277 TAGLRDADNFVERL---GIEKSNSLIKEASLVIYVIDVSSNLTKDDFLFIDSN-KSNSKI 332 Query: 318 VLALNKWDMVSDKLNLLQDLRTKAI----------KNLPQIGDIYINTISG-----RTGE 362 + LNK D+ +K + + +R+K + KNL I DI + I R Sbjct: 333 LFVLNKIDLKINK-STEEFVRSKVLNSSNLIMISTKNLEGI-DILYDKIRALISYERVEI 390 Query: 363 GLDDLMVS 370 GLDD+++S Sbjct: 391 GLDDIIIS 398 >gi|258593725|emb|CBE70066.1| GTP-binding protein (era) [NC10 bacterium 'Dutch sediment'] Length = 300 Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 52/178 (29%), Positives = 88/178 (49%), Gaps = 5/178 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKSTL NRL+ +K+++V P TR ++ G + G +DT GI D Sbjct: 11 VAIIGRPNVGKSTLMNRLLGQKVSIVSPRPQTTRTKIMGIRSLPGAQLIFLDTPGI-DKS 69 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + M ++ A LIL+++++ ++ D I L++ PI++ NK+D Sbjct: 70 GGYFHRLMVKTATNSLEGADLILWIVEAPDPLSQGDKLILEILKRVTSPILLAVNKVDLV 129 Query: 125 IAQRNFYEIYS----LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 + I L F EIV ISA + L S++ + + P +P + + + Sbjct: 130 QKESLLPTIDRFRSLLPFAEIVPISATKGDNVALLESLLVQYLPEGPPLYPPDQLTDQ 187 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKSTL+NRLLG + + TR + + + DT G+ K Sbjct: 11 VAIIGRPNVGKSTLMNRLLGQKVSIVSPRPQTTRTKIMGIRSLPGAQLIFLDTPGIDKSG 70 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L KT S++ + + +++A P + D I++ + ++LA+NK D Sbjct: 71 GYFHRLMVKTATNSLEG---ADLILWIVEAPDPLSQGDKLILEILKRVTSPILLAVNKVD 127 Query: 326 MV 327 +V Sbjct: 128 LV 129 >gi|242255962|gb|ACS88965.1| GTPase [Helicobacter pylori] Length = 170 Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKAINLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINSNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISAL 158 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKAINLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINSNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|227874499|ref|ZP_03992671.1| GTP-binding protein Era [Oribacterium sinus F0268] gi|227839643|gb|EEJ50101.1| GTP-binding protein Era [Oribacterium sinus F0268] Length = 319 Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 56/167 (33%), Positives = 83/167 (49%), Gaps = 12/167 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIV--DTAGIAD 62 ++IVG PN GKSTL N L+ +K+A+ P TR+++ A+ + IV DT GI Sbjct: 29 VSIVGLPNAGKSTLLNALIGQKVAITSKKPQTTRNQI--MAVYDEERGQIVFHDTPGIHK 86 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 KN ++ M E A+ L+L+++D+ + I S L+ II+V NK+D Sbjct: 87 AKN-QLSVYMESVAEKALGNGDLVLYIVDATEQKGEKEEQILSLLKHSKRKIILVLNKLD 145 Query: 123 TRIAQRNF------YEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 + F YE LDF IV ISA G EL ++F + Sbjct: 146 LLGGEDAFLKKKEDYE-KELDFAAIVGISAYKSQGLEELKDILFDLL 191 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 31/130 (23%), Positives = 67/130 (51%), Gaps = 3/130 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +++VG PN GKSTL+N L+G +T + TR+ + ++ + I DT G+ K Sbjct: 29 VSIVGLPNAGKSTLLNALIGQKVAITSKKPQTTRNQIMAVYDEERGQIVFHDTPGIHKAK 88 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + +K++ + + + ++DAT +++ +I+ + ++ ++L LNK D Sbjct: 89 NQLSVYMESVAEKALGN---GDLVLYIVDATEQKGEKEEQILSLLKHSKRKIILVLNKLD 145 Query: 326 MVSDKLNLLQ 335 ++ + L+ Sbjct: 146 LLGGEDAFLK 155 >gi|225548173|ref|ZP_03769458.1| hypothetical protein RUMHYD_00152 [Blautia hydrogenotrophica DSM 10507] gi|225040612|gb|EEG50858.1| hypothetical protein RUMHYD_00152 [Blautia hydrogenotrophica DSM 10507] Length = 301 Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 56/170 (32%), Positives = 90/170 (52%), Gaps = 23/170 (13%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIING----VIFNIVDTAGI 60 +A++G PNVGKSTL N L+ +K+A+ P TR+R+ Q + V+F +DT GI Sbjct: 10 VALIGRPNVGKSTLMNHLIGQKIAITSKKPQTTRNRI--QTVYTSPEGQVVF--LDTPGI 65 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 KN + + M E + E +IL+L++ + + I L++ ++P+I++ NK Sbjct: 66 HKAKN-KLGEYMVQVAERTLKEVDVILWLVEPTTFVGAGERRIAQQLQELHLPVILIINK 124 Query: 121 MDT----RIAQ-----RNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 +DT I Q R YE F EI+ ISA + T ++ + IFK Sbjct: 125 VDTVEKGEILQAIDVYRRLYE-----FDEIIPISALRNRNTGDIMNCIFK 169 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 65/130 (50%), Gaps = 4/130 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKSTL+N L+G +T + TR+ + + + DT G+ K Sbjct: 10 VALIGRPNVGKSTLMNHLIGQKIAITSKKPQTTRNRIQTVYTSPEGQVVFLDTPGIHKAK 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + V+ + ++++ + + L++ T + RI + V+L +NK D Sbjct: 70 ---NKLGEYMVQVAERTLKEVDVILWLVEPTTFVGAGERRIAQQLQELHLPVILIINKVD 126 Query: 326 MVSDKLNLLQ 335 V +K +LQ Sbjct: 127 TV-EKGEILQ 135 >gi|122702249|emb|CAL88315.1| GTPase [Helicobacter pylori] Length = 170 Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 54/159 (33%), Positives = 83/159 (52%), Gaps = 6/159 (3%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA-- 66 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSNKM 121 K+ ++K++ A + LIL+++D K + P D I F + K N +V NK+ Sbjct: 67 KDAFLSKEIKAFNLKAAQMSDLILYVVDGK--LIPSDEDIKLFREVFKINPNCFLVINKI 124 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 D + Y S + IS H+ G S L I Sbjct: 125 DNDKEKERTYAFSSFGMPKSFNISVSHNRGISVLIDAIL 163 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 4/120 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +++ ++ +K + S + + ++D + +D+++ VF L +NK D Sbjct: 70 FLSKEIKAFNLKAAQMS----DLILYVVDGKLIPSDEDIKLFREVFKINPNCFLVINKID 125 >gi|122701675|emb|CAL88227.1| GTPase [Helicobacter pylori] Length = 170 Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYIVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISAL 158 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYIVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|242255916|gb|ACS88942.1| GTPase [Helicobacter pylori] Length = 170 Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 52/164 (31%), Positives = 84/164 (51%), Gaps = 6/164 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 K+D + Y S + IS H+ G L I + Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGIGALIDAILSVL 166 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 85/172 (49%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D ++SVL++N+ Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGIGALIDAILSVLDLNQ 170 >gi|122702763|emb|CAL88571.1| GTPase [Helicobacter pylori] Length = 170 Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGAPKSFNISVSHNRGISAL 158 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122701337|emb|CAL88058.1| GTPase [Helicobacter pylori] Length = 170 Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISALIDAIL 163 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122701541|emb|CAL88160.1| GTPase [Helicobacter pylori] Length = 170 Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLSRERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISAL 158 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLSRERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122702425|emb|CAL88403.1| GTPase [Helicobacter pylori] gi|122702533|emb|CAL88456.1| GTPase [Helicobacter pylori] gi|122702693|emb|CAL88536.1| GTPase [Helicobacter pylori] gi|292806584|gb|ADE42422.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISAL 158 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|99905875|gb|ABF68632.1| YphC [Helicobacter pylori] gi|122701423|emb|CAL88101.1| GTPase [Helicobacter pylori] gi|122701475|emb|CAL88127.1| GTPase [Helicobacter pylori] gi|122702479|emb|CAL88430.1| GTPase [Helicobacter pylori] gi|122702505|emb|CAL88443.1| GTPase [Helicobacter pylori] gi|122702697|emb|CAL88538.1| GTPase [Helicobacter pylori] gi|122702753|emb|CAL88566.1| GTPase [Helicobacter pylori] gi|292806470|gb|ADE42365.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806532|gb|ADE42396.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806612|gb|ADE42436.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806652|gb|ADE42456.1| GTP-binding protein-like protein [Helicobacter pylori] gi|292806678|gb|ADE42469.1| GTP-binding protein-like protein [Helicobacter pylori] gi|317453519|emb|CBL87869.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISAL 158 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|318040678|ref|ZP_07972634.1| tRNA modification GTPase TrmE [Synechococcus sp. CB0101] Length = 449 Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 43/119 (36%), Positives = 68/119 (57%), Gaps = 4/119 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKS+L NRL + A+V + PG TRD + + ++ GV ++DTAGI Sbjct: 223 VAIVGRPNVGKSSLLNRLSCSERAIVTDLPGTTRDLVESELVLQGVPLTLLDTAGIR--A 280 Query: 65 NCSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 +Q+ +++ A+ A +L L D AG D A+ + + +P+++V NK D Sbjct: 281 TTDRVEQIGIERSRSALQVADAVLLLFDLSAGWCDDDAALGELV-PEGVPVLVVGNKAD 338 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 43/142 (30%), Positives = 78/142 (54%), Gaps = 5/142 (3%) Query: 187 ENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISW 246 E + ++G+ + + + LR+A+VGRPNVGKS+L+NRL R + G TRD V Sbjct: 205 EQLVADGERG-QLLREGLRVAIVGRPNVGKSSLLNRLSCSERAIVTDLPGTTRDLVESEL 263 Query: 247 NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRI 306 + P+ + DTAG+R T+ +EQ +++S +++ + ++L D + + D + Sbjct: 264 VLQGVPLTLLDTAGIRA---TTDRVEQIGIERSRSALQVADAVLLLFDLSAGWCDDDAAL 320 Query: 307 VDSVFNTGHAVVLALNKWDMVS 328 + V G V++ NK D ++ Sbjct: 321 GELV-PEGVPVLVVGNKADQLT 341 >gi|328474122|gb|EGF44927.1| GTPase Era [Vibrio parahaemolyticus 10329] Length = 303 Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 48/150 (32%), Positives = 81/150 (54%), Gaps = 8/150 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N+++ +K+++ P TR R+ G VDT G+ + Sbjct: 12 IAIVGRPNVGKSTLLNKILGQKISITSRKPQTTRHRIMGVDTDGDYQAIYVDTPGLHIEE 71 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN ++++ +L+ FL+D T D + + L+K N P+++ NK+D Sbjct: 72 KRAINRLMNRAANSSLSDVNLVFFLVDG-THWTKDDEMVLTKLQKSNFPVVLCVNKVDN- 129 Query: 125 IAQRNFYEIY------SLDFKEIVEISAEH 148 + RN ++ +DF ++V ISA+ Sbjct: 130 VQDRNEVMLHMAEMSKKMDFVDVVPISAKQ 159 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/126 (30%), Positives = 60/126 (47%), Gaps = 5/126 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMR-KP 264 IA+VGRPNVGKSTL+N++LG +T + TR + ++ DT G+ + Sbjct: 12 IAIVGRPNVGKSTLLNKILGQKISITSRKPQTTRHRIMGVDTDGDYQAIYVDTPGLHIEE 71 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 R L + S+ V L+D T + K D ++ + + VVL +NK Sbjct: 72 KRAINRLMNRAANSSLSDVNLV---FFLVDGT-HWTKDDEMVLTKLQKSNFPVVLCVNKV 127 Query: 325 DMVSDK 330 D V D+ Sbjct: 128 DNVQDR 133 >gi|317495247|ref|ZP_07953617.1| GTP-binding protein Era [Gemella moribillum M424] gi|316914669|gb|EFV36145.1| GTP-binding protein Era [Gemella moribillum M424] Length = 302 Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 60/199 (30%), Positives = 99/199 (49%), Gaps = 25/199 (12%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFN------IVDTA 58 + I+G PN GKSTL N ++K+K+A++ + P TR+ IINGV + +DT Sbjct: 11 VTIIGRPNAGKSTLLNNILKQKIAIMSDKPQTTRN------IINGVYTDQDSQIVFIDTP 64 Query: 59 GIADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVS 118 GI K+ + M AI E+ ++ +I++ P D + + +++ N+P ++ Sbjct: 65 GIHKPKH-RLGDYMMKLASSAIQESEIVYLIINAGEKFGPGDQHLINIVKELNVPTFLLI 123 Query: 119 NKMDTRIAQRNFYEIYSL-----DFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLE 173 NK+D I+ EI S DF EIV ISA + L +V K + Y +P + Sbjct: 124 NKIDL-ISPEKLIEIISFYKDLYDFVEIVPISALKSINVDNLLNVTKKYLQLSYKMYPDD 182 Query: 174 MIENNKRNEESPKENITSE 192 +I + SP+ + SE Sbjct: 183 VITD------SPEYFVISE 195 Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 31/123 (25%), Positives = 60/123 (48%), Gaps = 3/123 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 + ++GRPN GKSTL+N +L + + TR+ ++ + ++ I DT G+ KP Sbjct: 11 VTIIGRPNAGKSTLLNNILKQKIAIMSDKPQTTRNIINGVYTDQDSQIVFIDTPGIHKPK 70 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L +K + +++ E ++++A F D +++ V L +NK D Sbjct: 71 H---RLGDYMMKLASSAIQESEIVYLIINAGEKFGPGDQHLINIVKELNVPTFLLINKID 127 Query: 326 MVS 328 ++S Sbjct: 128 LIS 130 >gi|313900904|ref|ZP_07834394.1| tRNA modification GTPase TrmE [Clostridium sp. HGF2] gi|312954324|gb|EFR36002.1| tRNA modification GTPase TrmE [Clostridium sp. HGF2] Length = 443 Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 45/118 (38%), Positives = 71/118 (60%), Gaps = 5/118 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AIVG PNVGKS+L N L++++ A+V + G TRD + G + G+ N++DTAGI D ++ Sbjct: 223 AIVGKPNVGKSSLLNALLEEEKAIVTDIAGTTRDIVEGHIHLQGLTLNLIDTAGIRDTED 282 Query: 66 CSIAKQMNDQTEL-AINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + +Q+ + L AI+EA L++ ++DS + D + + K IIV NK D Sbjct: 283 --VVEQIGIRRSLQAISEAQLVIVVLDSSHALDAQDEELLELTKDKT--RIIVYNKTD 336 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 33/109 (30%), Positives = 65/109 (59%), Gaps = 3/109 (2%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + ++ A+VG+PNVGKS+L+N LL + + +G TRD V + + + + DTA Sbjct: 216 LKEGIKTAIVGKPNVGKSSLLNALLEEEKAIVTDIAGTTRDIVEGHIHLQGLTLNLIDTA 275 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVD 308 G+R + +EQ +++S+Q++ + IV+LD++ + QD +++ Sbjct: 276 GIRDTEDV---VEQIGIRRSLQAISEAQLVIVVLDSSHALDAQDEELLE 321 >gi|239627753|ref|ZP_04670784.1| GTP-binding protein Era [Clostridiales bacterium 1_7_47_FAA] gi|239517899|gb|EEQ57765.1| GTP-binding protein Era [Clostridiales bacterium 1_7_47FAA] Length = 303 Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 58/166 (34%), Positives = 86/166 (51%), Gaps = 14/166 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIING----VIFNIVDTAGI 60 + ++G PNVGKSTL N L+ +K+A+ + P TR+R+ Q + +IF +DT GI Sbjct: 12 VTLIGRPNVGKSTLMNHLIGQKIAITSDKPQTTRNRI--QTVYTDDRGQIIF--LDTPGI 67 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 KN + + M + E + + +IL+L++ I + I L K PII+V NK Sbjct: 68 HKAKN-KLGEYMVNVAEHTLRDVDVILWLVEPSTFIGAGERHIAEQLNKVKTPIILVINK 126 Query: 121 MDTRIAQRN---FYEIYS--LDFKEIVEISAEHDLGTSELHSVIFK 161 +DT Q F Y DF EIV +SA + T L +IFK Sbjct: 127 IDTVKNQDEILTFMAAYKDICDFAEIVPLSALKEKNTDLLTELIFK 172 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 32/129 (24%), Positives = 61/129 (47%), Gaps = 3/129 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 + ++GRPNVGKSTL+N L+G +T + TR+ + + I DT G+ K Sbjct: 12 VTLIGRPNVGKSTLMNHLIGQKIAITSDKPQTTRNRIQTVYTDDRGQIIFLDTPGIHKAK 71 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + V + ++R + + L++ + + I + + ++L +NK D Sbjct: 72 N---KLGEYMVNVAEHTLRDVDVILWLVEPSTFIGAGERHIAEQLNKVKTPIILVINKID 128 Query: 326 MVSDKLNLL 334 V ++ +L Sbjct: 129 TVKNQDEIL 137 >gi|122702853|emb|CAL88616.1| GTPase [Helicobacter pylori] Length = 170 Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQISDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 83/172 (48%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + + + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLK----AAQISDLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D ++S L +N+ Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSALNLNQ 170 >gi|292806588|gb|ADE42424.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISAL 158 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|18075583|emb|CAD11187.1| GTP-binding protein [Helicobacter pylori] gi|122702811|emb|CAL88595.1| GTPase [Helicobacter pylori] Length = 170 Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKAFNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERSYAFSSFGAPKSFNISVSHNRGISAL 158 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKAFNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|149002005|ref|ZP_01826959.1| phosphoglycerate dehydrogenase-related protein [Streptococcus pneumoniae SP14-BS69] gi|147759814|gb|EDK66804.1| phosphoglycerate dehydrogenase-related protein [Streptococcus pneumoniae SP14-BS69] Length = 92 Score = 76.3 bits (186), Expect = 1e-11, Method: Composition-based stats. Identities = 38/85 (44%), Positives = 57/85 (67%), Gaps = 1/85 (1%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAIVG PNVGKSTLFNR+ +++++V + G+TRDR+Y F+++DT GI D Sbjct: 5 TIAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRSFSMIDTGGI-DD 63 Query: 64 KNCSIAKQMNDQTELAINEAHLILF 88 + +Q+ Q E+A+ EA +I+F Sbjct: 64 VDAPFMEQIKHQAEIAMEEADVIVF 88 Score = 55.5 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 25/56 (44%), Positives = 33/56 (58%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGM 261 IA+VGRPNVGKSTL NR+ G + G+TRD + + W N + DT G+ Sbjct: 6 IAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYATGEWLNRSFSMIDTGGI 61 >gi|122702699|emb|CAL88539.1| GTPase [Helicobacter pylori] Length = 170 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 51/156 (32%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + +S H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNVSVSHNRGISAL 158 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122700635|emb|CAL87906.1| GTPase [Helicobacter pylori] Length = 170 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKSLNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGAPKSFNISVSHNRGISAL 158 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKSLNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|242255844|gb|ACS88906.1| GTPase [Helicobacter pylori] Length = 170 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKVLNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISTLIDAIL 163 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKVLNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122700637|emb|CAL87907.1| GTPase [Helicobacter pylori] Length = 170 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAARMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISAL 158 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + R + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLK----AARMSDLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122702501|emb|CAL88441.1| GTPase [Helicobacter pylori] Length = 170 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKERERAYAFSSFGIPKSFNISVSHNRGISAL 158 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|317452833|emb|CBL87852.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREIFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISVLVDAIL 163 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ +F L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREIFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122700713|emb|CAL87945.1| GTPase [Helicobacter pylori] Length = 170 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISTL 158 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122702491|emb|CAL88436.1| GTPase [Helicobacter pylori] Length = 170 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPNDEDLKLFREIFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISAL 158 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 63/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP +DL++ +F L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIP-NDEDLKLFREIFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|292806444|gb|ADE42352.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKAINLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISAL 158 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 84/172 (48%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKAINLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D ++S L++N+ Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLSALDLNQ 170 >gi|122702621|emb|CAL88500.1| GTPase [Helicobacter pylori] Length = 170 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 52/161 (32%), Positives = 83/161 (51%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKVAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 84/172 (48%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKVAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D ++S L +N+ Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSALNLNQ 170 >gi|122700733|emb|CAL87955.1| GTPase [Helicobacter pylori] gi|122702349|emb|CAL88365.1| GTPase [Helicobacter pylori] Length = 170 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGVPKSFNISVSHNRGISAL 158 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|292806656|gb|ADE42458.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQISDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + + + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLK----AAQISDLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|292806562|gb|ADE42411.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 52/160 (32%), Positives = 83/160 (51%), Gaps = 6/160 (3%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAI+G PNVGKS+LFN L ++++A+ + G TRD + +NG ++DT G+A Sbjct: 9 TIAILGQPNVGKSSLFNHLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGMA-- 66 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSNKM 121 K+ ++K++ A + LIL+++D K+ P D + F + K N +V NK+ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVINKI 124 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 D + Y S + IS H+ G S L I + Sbjct: 125 DNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAILR 164 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 63/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L N L +T +G TRD + +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNHLARERIAITSDFAGTTRDINKRKIALNGYEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|218291088|ref|ZP_03495111.1| tRNA modification GTPase TrmE [Alicyclobacillus acidocaldarius LAA1] gi|218238973|gb|EED06180.1| tRNA modification GTPase TrmE [Alicyclobacillus acidocaldarius LAA1] Length = 465 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 64/239 (26%), Positives = 116/239 (48%), Gaps = 23/239 (9%) Query: 167 YPNHPLEMIENNKRNEESPKENITSEGKSSVKN--ISKPLR----IAVVGRPNVGKSTLI 220 YP H +E + + + S E + E S +++ + + LR A+VGRPNVGKS+L+ Sbjct: 187 YPEHDVEDVACD--HVVSVCEGMMGEIDSLIRSAELGRVLRDGVATAIVGRPNVGKSSLL 244 Query: 221 NRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSM 280 N L+ +R + G TRD + N + P+ + DTAG+R+ + E + V +S Sbjct: 245 NALVERDRAIVTDLPGTTRDVLEEYINLRGIPLRLIDTAGIRETEDVVERI---GVARSR 301 Query: 281 QSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTK 340 +S++ E +++LD + P +D I + G ++ LNK D + + + Sbjct: 302 ESMQKAELVLLVLDGSEPPSPEDEAIARE--SDGSRRIVVLNKID---------RGIHAE 350 Query: 341 AIKNLPQIGDIYINTISGRTGEGLDDLMVSVL-EINKLWKTRITTSYLNSWLQKTQLQN 398 A + ++ +S R G GLD L +++ +I + + SY+ + QK L+ Sbjct: 351 AARLADELAPEGAVRVSAREGTGLDTLRDAIVNKIRRDLAIDLDASYMANHRQKRLLEE 409 Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 49/155 (31%), Positives = 76/155 (49%), Gaps = 3/155 (1%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AIVG PNVGKS+L N LV++ A+V + PG TRD L + G+ ++DTAGI + ++ Sbjct: 231 AIVGRPNVGKSSLLNALVERDRAIVTDLPGTTRDVLEEYINLRGIPLRLIDTAGIRETED 290 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 + + ++ ++ +A L+L ++D +P D AI I+V NK+D I Sbjct: 291 V-VERIGVARSRESMQKAELVLLVLDGSEPPSPEDEAIAR--ESDGSRRIVVLNKIDRGI 347 Query: 126 AQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 L + V +SA G L I Sbjct: 348 HAEAARLADELAPEGAVRVSAREGTGLDTLRDAIV 382 >gi|153854261|ref|ZP_01995560.1| hypothetical protein DORLON_01554 [Dorea longicatena DSM 13814] gi|149753036|gb|EDM62967.1| hypothetical protein DORLON_01554 [Dorea longicatena DSM 13814] Length = 460 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 55/204 (26%), Positives = 106/204 (51%), Gaps = 22/204 (10%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 I + +R ++G+PN GKS+L+N LLG +R + +G TRD + N K + I DTA Sbjct: 220 IKEGVRTVILGKPNAGKSSLLNVLLGEDRAIVTDIAGTTRDVLEEHLNLKGISLNIMDTA 279 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R + E + V ++ + + + ++DA+ P ++ D I+ + G ++ Sbjct: 280 GIRDTEDVVEKI---GVDRAKEYADKADLILYVIDASRPLDENDAEILHLI--KGKRAII 334 Query: 320 ALNKWDMVSDKLNLLQDLR-TKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLW 378 LNK D+ D++ TK + LP+ + + IS + +G+++L ++ E+ + Sbjct: 335 LLNKSDL---------DMQVTKEQEELPE--EFPVIEISAKNVQGIEELEDTLKEM--FF 381 Query: 379 KTRITTS---YLNSWLQKTQLQNP 399 + +T + Y+ + QKT LQ+ Sbjct: 382 QGELTFNDEIYITNVRQKTALQDA 405 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 50/159 (31%), Positives = 87/159 (54%), Gaps = 4/159 (2%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 I+G PN GKS+L N L+ + A+V + G TRD L + G+ NI+DTAGI D ++ Sbjct: 228 ILGKPNAGKSSLLNVLLGEDRAIVTDIAGTTRDVLEEHLNLKGISLNIMDTAGIRDTEDV 287 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 + K D+ + ++A LIL++ID+ + D I ++ K I++ + +D ++ Sbjct: 288 -VEKIGVDRAKEYADKADLILYVIDASRPLDENDAEILHLIKGKRAIILLNKSDLDMQVT 346 Query: 127 QRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQ 165 + E +F ++EISA++ G EL + ++F Q Sbjct: 347 KEQ--EELPEEFP-VIEISAKNVQGIEELEDTLKEMFFQ 382 >gi|118594209|ref|ZP_01551556.1| tRNA modification GTPase [Methylophilales bacterium HTCC2181] gi|118439987|gb|EAV46614.1| tRNA modification GTPase [Methylophilales bacterium HTCC2181] Length = 450 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 54/167 (32%), Positives = 88/167 (52%), Gaps = 21/167 (12%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + ++G PNVGKS+L N+LV ++ A+V + PG TRD + I+G+ N+ DTAG+ Sbjct: 219 VVLIGQPNVGKSSLLNQLVGEEKAIVTDVPGTTRDPIASNISIHGIPLNVFDTAGL---- 274 Query: 65 NCSIAKQMNDQTEL--------AINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIII 116 + +DQ EL +I +H+ + L+D+ G Y+ I S L KNI I+ Sbjct: 275 -----RTTDDQVELLGISKTWESIKGSHIAMVLVDATKGAGNYEKDIISRL-PKNIEILW 328 Query: 117 VSNKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 + NK+D + E + + + ISA+ DLG L +++I Sbjct: 329 IYNKIDLTDDKPKAVE---HNQNKSIYISAKLDLGIDLLREALYEIL 372 Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 30/91 (32%), Positives = 56/91 (61%), Gaps = 3/91 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 + ++G+PNVGKS+L+N+L+G + + G TRD ++ + + P+ +FDTAG+R Sbjct: 219 VVLIGQPNVGKSSLLNQLVGEEKAIVTDVPGTTRDPIASNISIHGIPLNVFDTAGLRTTD 278 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDAT 296 + +E + K+ +S++ +VL+DAT Sbjct: 279 ---DQVELLGISKTWESIKGSHIAMVLVDAT 306 >gi|122702223|emb|CAL88302.1| GTPase [Helicobacter pylori] Length = 170 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 52/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL++++ K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVNGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISTLIDAIL 163 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 62/120 (51%), Gaps = 4/120 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +++ ++ +K + S V+ +IP + +DL++ VF T L +NK D Sbjct: 70 LLSKEIKALNLKAAQMSDLIL---YVVNGKSIPSD-EDLKLFREVFKTNPNCFLVINKID 125 >gi|18075573|emb|CAD11182.1| GTP-binding protein [Helicobacter pylori] gi|122702805|emb|CAL88592.1| GTPase [Helicobacter pylori] Length = 170 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDTLLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERSYAFSSFGAPKSFNISVSHNRGISAL 158 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDT 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|260584383|ref|ZP_05852130.1| tRNA modification GTPase TrmE [Granulicatella elegans ATCC 700633] gi|260157901|gb|EEW92970.1| tRNA modification GTPase TrmE [Granulicatella elegans ATCC 700633] Length = 476 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 43/141 (30%), Positives = 83/141 (58%), Gaps = 9/141 (6%) Query: 188 NITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWN 247 N S+GK + L+ A+VGRPNVGKS+L+N LL + + +G TRD++ N Sbjct: 227 NTASQGKI----LRDGLKTAIVGRPNVGKSSLLNVLLREEKAIVTDIAGTTRDTIEEYVN 282 Query: 248 WKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIV 307 + P+++ DTAG+R+ I E + V++S ++++ + ++LL+ + +++D+R++ Sbjct: 283 VRGVPLQLIDTAGIRETDDIVEKI---GVERSRKALKEADFVLLLLNQSETLQEEDIRLL 339 Query: 308 DSVFNTGHAVVLALNKWDMVS 328 ++ G ++ NK D+ S Sbjct: 340 ET--TKGMKRIILFNKTDLPS 358 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 50/167 (29%), Positives = 84/167 (50%), Gaps = 7/167 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AIVG PNVGKS+L N L++++ A+V + G TRD + + GV ++DTAGI + + Sbjct: 242 AIVGRPNVGKSSLLNVLLREEKAIVTDIAGTTRDTIEEYVNVRGVPLQLIDTAGIRETDD 301 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD--T 123 + K +++ A+ EA +L L++ + D I K + II+ NK D + Sbjct: 302 I-VEKIGVERSRKALKEADFVLLLLNQSETLQEED--IRLLETTKGMKRIILFNKTDLPS 358 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNH 170 ++++ + ++ EIV S + G +L I F Q N Sbjct: 359 KLSKEDIAPYAQVE--EIVTTSMLNKEGIDQLEEKIAGYFFQGQMNE 403 >gi|315604800|ref|ZP_07879859.1| GTP-binding protein Era [Actinomyces sp. oral taxon 180 str. F0310] gi|315313471|gb|EFU61529.1| GTP-binding protein Era [Actinomyces sp. oral taxon 180 str. F0310] Length = 402 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 55/183 (30%), Positives = 89/183 (48%), Gaps = 9/183 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFN--IVDTAGIAD 62 ++IVG PNVGKSTL N LV K+A+ P TR + G I++G + +VDT G Sbjct: 110 VSIVGRPNVGKSTLTNALVGAKIAITSGRPETTRHNIRG--IVHGDNYQLVLVDTPGYHR 167 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + + K++ND A++E ++LF + + I P D I LR PII V+ K D Sbjct: 168 PRTL-LGKRLNDMVREALSEVDVVLFCLPADQRIGPGDQFIARELRSVKRPIIAVATKCD 226 Query: 123 TRIAQRNFYEIYSL----DFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 +R + ++ ++ IV +S+ G L V+ + P +P + + Sbjct: 227 AVARERVMKHLLAIEKLGEWAAIVPVSSVEGKGIDHLRDVLAQTVPLSPPLYPDGDVTDE 286 Query: 179 KRN 181 R+ Sbjct: 287 SRD 289 Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 42/78 (53%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +++VGRPNVGKSTL N L+G +T + TR ++ + N+ + + DT G +P Sbjct: 110 VSIVGRPNVGKSTLTNALVGAKIAITSGRPETTRHNIRGIVHGDNYQLVLVDTPGYHRPR 169 Query: 266 RITESLEQKTVKKSMQSV 283 + V++++ V Sbjct: 170 TLLGKRLNDMVREALSEV 187 >gi|122702341|emb|CAL88361.1| GTPase [Helicobacter pylori] Length = 170 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLRLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGVPKSFNISVSHNRGISAL 158 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DLR+ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLRLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|323703320|ref|ZP_08114970.1| GTP-binding protein Era [Desulfotomaculum nigrificans DSM 574] gi|323531683|gb|EGB21572.1| GTP-binding protein Era [Desulfotomaculum nigrificans DSM 574] Length = 302 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 51/175 (29%), Positives = 87/175 (49%), Gaps = 5/175 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTL N+LV +K+A++ + P TR +++ N +DT GI + Sbjct: 13 VALVGRPNVGKSTLLNKLVGQKVAIMSDKPQTTRHKIHSVLSRNDAQIVFLDTPGIHKPR 72 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + + M D A+ E ++LFL+++ D I L++ P+ ++ NK+D Sbjct: 73 H-KLGEYMVDVALGALKEVDVVLFLVEATGPPGAGDRYIAEQLKEIKTPVFLLINKVDLV 131 Query: 125 IAQRNFYEIYS----LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 + I S LDF E+V +SA L I + + +P +M+ Sbjct: 132 KKEEVLERIVSYKDLLDFAEVVPVSALAGENVDRLVDTIVQYLPEGPQYYPADMV 186 Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 47/168 (27%), Positives = 85/168 (50%), Gaps = 8/168 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VGRPNVGKSTL+N+L+G + + TR + + + I DT G+ KP Sbjct: 13 VALVGRPNVGKSTLLNKLVGQKVAIMSDKPQTTRHKIHSVLSRNDAQIVFLDTPGIHKPR 72 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + V ++ +++ + + L++AT P D I + + V L +NK D Sbjct: 73 H---KLGEYMVDVALGALKEVDVVLFLVEATGPPGAGDRYIAEQLKEIKTPVFLLINKVD 129 Query: 326 MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 +V K +L+ R + K+L ++ +S GE +D L+ ++++ Sbjct: 130 LVK-KEEVLE--RIVSYKDLLDFAEVV--PVSALAGENVDRLVDTIVQ 172 >gi|122702195|emb|CAL88288.1| GTPase [Helicobacter pylori] Length = 170 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--LPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGAPKSFNISVSHNRGISALIDAIL 163 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 4/120 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +++ ++ +K + S + + ++D +DL++ VF L +NK D Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSLPSDEDLKLFREVFKINPNCFLVINKID 125 >gi|4467665|emb|CAB37784.1| GTP-binding protein homologue [Helicobacter pylori] Length = 170 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 82/156 (52%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKVAQMSDLILYVVDGKS--IPSDEDIKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGVPKSFNISVSHNRGISAL 158 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF T L +NK Sbjct: 70 LLSKEIKALNLKVAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|292806452|gb|ADE42356.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDTLLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERSYAFSSFGIPKSFNISVSHNRGISAL 158 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDT 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122700625|emb|CAL87901.1| GTPase [Helicobacter pylori] Length = 170 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEMELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGAPKSFNISVSHNRGISAL 158 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEMELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122702719|emb|CAL88549.1| GTPase [Helicobacter pylori] Length = 170 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDTLLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISAL 158 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDT 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122702747|emb|CAL88563.1| GTPase [Helicobacter pylori] Length = 170 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 54/159 (33%), Positives = 83/159 (52%), Gaps = 6/159 (3%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 9 TIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA-- 66 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSNKM 121 K+ ++K++ A + LIL+++D K+ P D I F + K N +V NK+ Sbjct: 67 KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVINKI 124 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 D + Y S + IS H+ G S L I Sbjct: 125 DNDKEKERAYVFSSFGIPKSFNISVSHNRGISVLIDAIL 163 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122701419|emb|CAL88099.1| GTPase [Helicobacter pylori] Length = 170 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 52/162 (32%), Positives = 84/162 (51%), Gaps = 6/162 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKTAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 K+D + Y S + IS H+ G S L I + Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISTLIDAILR 164 Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKTAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122702181|emb|CAL88281.1| GTPase [Helicobacter pylori] Length = 170 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLSRERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDVLLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREIFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISAL 158 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 63/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K Sbjct: 10 IAILGQPNVGKSSLFNRLSRERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDV 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ +F L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREIFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122700739|emb|CAL87958.1| GTPase [Helicobacter pylori] gi|122702841|emb|CAL88610.1| GTPase [Helicobacter pylori] Length = 170 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERSYAFSSFGAPKSFNISVSHNRGISAL 158 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|303235717|ref|ZP_07322324.1| tRNA modification GTPase TrmE [Prevotella disiens FB035-09AN] gi|302484164|gb|EFL47152.1| tRNA modification GTPase TrmE [Prevotella disiens FB035-09AN] Length = 460 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 55/166 (33%), Positives = 88/166 (53%), Gaps = 22/166 (13%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G NVGKSTL NRL++ A+V + G TRD + INGV F +DTAGI K Sbjct: 228 VAIIGKTNVGKSTLLNRLLRDNRAIVSDIHGTTRDVIEDSISINGVDFLFIDTAGIR--K 285 Query: 65 NCSIAKQMNDQTELA-INEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD- 122 +Q+ + LA + +A ++L+++D + + IT K+ +I+V NK+D Sbjct: 286 TTDYVEQLGIERTLAELQKAQIVLWVVDQEPTEAEKEEIITQCTDKQ---LILVRNKVDD 342 Query: 123 ------TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKI 162 T + ++EI IS +++LG L S+I+K+ Sbjct: 343 LPETTPTLSENQTYHEIA---------ISGKYNLGIDRLESLIYKV 379 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 64/120 (53%), Gaps = 6/120 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++G+ NVGKSTL+NRLL NR + G TRD + S + DTAG+RK Sbjct: 228 VAIIGKTNVGKSTLLNRLLRDNRAIVSDIHGTTRDVIEDSISINGVDFLFIDTAGIRKT- 286 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 T+ +EQ +++++ ++ + + ++D P E + I+ T ++L NK D Sbjct: 287 --TDYVEQLGIERTLAELQKAQIVLWVVDQE-PTEAEKEEIITQC--TDKQLILVRNKVD 341 >gi|122702129|emb|CAL88255.1| GTPase [Helicobacter pylori] Length = 170 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 52/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + + S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAFAFSSFGMPKSFSISVSHNRGISALIDAIL 163 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122700629|emb|CAL87903.1| GTPase [Helicobacter pylori] gi|122700703|emb|CAL87940.1| GTPase [Helicobacter pylori] Length = 170 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGVPKSFNISVSHNRGISTL 158 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|116493570|ref|YP_805305.1| tRNA modification GTPase TrmE [Pediococcus pentosaceus ATCC 25745] gi|122264966|sp|Q03D59|MNME_PEDPA RecName: Full=tRNA modification GTPase mnmE gi|116103720|gb|ABJ68863.1| tRNA modification GTPase trmE [Pediococcus pentosaceus ATCC 25745] Length = 464 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 55/160 (34%), Positives = 90/160 (56%), Gaps = 7/160 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS++ N L+ + A+V + G TRD + + GV +VDTAGI + ++ Sbjct: 229 AIIGHPNVGKSSILNHLLHEDKAIVTDVAGTTRDVIEEYVNVQGVPLKLVDTAGIHETED 288 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKN-IPIIIVSNKMDTR 124 + K D++ A+++A L++ ++DS + D LR+ N + I+V NK D Sbjct: 289 -KVEKIGVDRSRKALSQADLVILVLDSSVPLRDEDR---ELLRETNHMQRIVVLNKSDLE 344 Query: 125 IAQRNFYEIYS-LDFKEIVEISAEHDLGTSELHSVIFKIF 163 + + N E+ +D KEI++ SA LGT +L I +F Sbjct: 345 V-KINLNELQEYVDDKEIIKSSAVSPLGTKDLEDRIAAMF 383 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 42/140 (30%), Positives = 78/140 (55%), Gaps = 6/140 (4%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + L A++G PNVGKS+++N LL ++ + +G TRD + N + P+++ D Sbjct: 220 KVLRDGLATAIIGHPNVGKSSILNHLLHEDKAIVTDVAGTTRDVIEEYVNVQGVPLKLVD 279 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+ + + +E+ V +S +++ + I++LD+++P +D ++ + V Sbjct: 280 TAGIHETE---DKVEKIGVDRSRKALSQADLVILVLDSSVPLRDEDRELLRETNHMQRIV 336 Query: 318 VLALNKWDM-VSDKLNLLQD 336 V LNK D+ V LN LQ+ Sbjct: 337 V--LNKSDLEVKINLNELQE 354 >gi|122702433|emb|CAL88407.1| GTPase [Helicobacter pylori] Length = 170 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGAPKSFNISVSHNRGISALIDAIL 163 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|317452849|emb|CBL87860.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 83/161 (51%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG +DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVEFLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISALIDAIL 163 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 63/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVEFLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|254230525|ref|ZP_04923896.1| GTP-binding protein Era [Vibrio sp. Ex25] gi|262393271|ref|YP_003285125.1| GTP-binding protein Era [Vibrio sp. Ex25] gi|151936950|gb|EDN55837.1| GTP-binding protein Era [Vibrio sp. Ex25] gi|262336865|gb|ACY50660.1| GTP-binding protein Era [Vibrio sp. Ex25] Length = 320 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 48/150 (32%), Positives = 81/150 (54%), Gaps = 8/150 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N+++ +K+++ P TR R+ G VDT G+ + Sbjct: 29 IAIVGRPNVGKSTLLNKILGQKISITSRKPQTTRHRIMGVDTDGDYQAIYVDTPGLHIEE 88 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN ++++ +L+ FL+D T D + + L+K N P+++ NK+D Sbjct: 89 KRAINRLMNRAANSSLSDVNLVFFLVDG-THWTKDDEMVLTKLQKSNFPVVLCVNKVDN- 146 Query: 125 IAQRNFYEIY------SLDFKEIVEISAEH 148 + RN ++ +DF ++V ISA+ Sbjct: 147 VQDRNEVMLHMAEMSKKMDFVDVVPISAKQ 176 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/126 (30%), Positives = 60/126 (47%), Gaps = 5/126 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMR-KP 264 IA+VGRPNVGKSTL+N++LG +T + TR + ++ DT G+ + Sbjct: 29 IAIVGRPNVGKSTLLNKILGQKISITSRKPQTTRHRIMGVDTDGDYQAIYVDTPGLHIEE 88 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 R L + S+ V L+D T + K D ++ + + VVL +NK Sbjct: 89 KRAINRLMNRAANSSLSDVNLV---FFLVDGT-HWTKDDEMVLTKLQKSNFPVVLCVNKV 144 Query: 325 DMVSDK 330 D V D+ Sbjct: 145 DNVQDR 150 >gi|122701465|emb|CAL88122.1| GTPase [Helicobacter pylori] Length = 170 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 83/161 (51%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFN L ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNCLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERSYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L N L +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNCLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|154484522|ref|ZP_02026970.1| hypothetical protein EUBVEN_02236 [Eubacterium ventriosum ATCC 27560] gi|149734370|gb|EDM50287.1| hypothetical protein EUBVEN_02236 [Eubacterium ventriosum ATCC 27560] Length = 300 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 58/192 (30%), Positives = 93/192 (48%), Gaps = 11/192 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A++G PNVGKSTL N+++ +K+A+ P TR+++ + +DT GI K Sbjct: 10 VALIGRPNVGKSTLMNQIIGQKIAITSKKPQTTRNKIQTVYTCDEGQIVFLDTPGIHKAK 69 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 N + + M + E + E LIL+L++ I + I L+ ++P+I+V NK DT Sbjct: 70 N-KLGEYMVNVAEKTLKEVDLILWLVEPDTFIGAGEQHIAEQLKGIDVPVILVINKTDTV 128 Query: 124 -RIAQRNFYEIYS--LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 R F + Y DF EI+ SA T + IFK P P+ E+ Sbjct: 129 KREEILTFIDAYRKIYDFNEIIPASALRGQNTDTVVEEIFKYL----PEGPMYYDEDTVT 184 Query: 181 NEESPKENITSE 192 ++ P I +E Sbjct: 185 DQ--PMRQIVAE 194 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 31/122 (25%), Positives = 59/122 (48%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKSTL+N+++G +T + TR+ + + I DT G+ K Sbjct: 10 VALIGRPNVGKSTLMNQIIGQKIAITSKKPQTTRNKIQTVYTCDEGQIVFLDTPGIHKAK 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + V + ++++ + + L++ + I + + V+L +NK D Sbjct: 70 N---KLGEYMVNVAEKTLKEVDLILWLVEPDTFIGAGEQHIAEQLKGIDVPVILVINKTD 126 Query: 326 MV 327 V Sbjct: 127 TV 128 >gi|257452783|ref|ZP_05618082.1| GTP-binding protein Era [Fusobacterium sp. 3_1_5R] gi|257466849|ref|ZP_05631160.1| GTP-binding protein Era [Fusobacterium gonidiaformans ATCC 25563] gi|315917997|ref|ZP_07914237.1| GTP-binding protein era [Fusobacterium gonidiaformans ATCC 25563] gi|317059324|ref|ZP_07923809.1| GTP-binding protein era [Fusobacterium sp. 3_1_5R] gi|313685000|gb|EFS21835.1| GTP-binding protein era [Fusobacterium sp. 3_1_5R] gi|313691872|gb|EFS28707.1| GTP-binding protein era [Fusobacterium gonidiaformans ATCC 25563] Length = 296 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 42/118 (35%), Positives = 68/118 (57%), Gaps = 1/118 (0%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTL N+LV +K+A+V + G TRD + G G + +DT GI K Sbjct: 6 IAVVGRPNVGKSTLMNKLVSEKVAIVSDKAGTTRDNIKGILNFQGKQYIFIDTPGIHKPK 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + + + M + ++ +A ILFL+D I+ D + ++ P++++ NK+D Sbjct: 66 HL-LGEYMTEIAIRSLKDADAILFLLDGTQEISTGDFFVWEKIQSSKKPVVVLVNKID 122 Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 40/124 (32%), Positives = 69/124 (55%), Gaps = 3/124 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IAVVGRPNVGKSTL+N+L+ + ++G TRD++ N++ DT G+ KP Sbjct: 6 IAVVGRPNVGKSTLMNKLVSEKVAIVSDKAGTTRDNIKGILNFQGKQYIFIDTPGIHKPK 65 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + L + + +++S++ + + LLD T D + + + ++ VV+ +NK D Sbjct: 66 HL---LGEYMTEIAIRSLKDADAILFLLDGTQEISTGDFFVWEKIQSSKKPVVVLVNKID 122 Query: 326 MVSD 329 +SD Sbjct: 123 KISD 126 >gi|288573317|ref|ZP_06391674.1| tRNA modification GTPase TrmE [Dethiosulfovibrio peptidovorans DSM 11002] gi|288569058|gb|EFC90615.1| tRNA modification GTPase TrmE [Dethiosulfovibrio peptidovorans DSM 11002] Length = 456 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 53/178 (29%), Positives = 98/178 (55%), Gaps = 19/178 (10%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + +R+A+VGRPNVGKS+L+N LL +R + S G TRD + + K P+ + DTA Sbjct: 216 LREGIRVALVGRPNVGKSSLLNALLRESRAIVTSIPGTTRDVIEEVFTHKGIPLRLMDTA 275 Query: 260 GMRK-PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVV 318 G+R+ PS + +E ++++ +++ + + +LD + P E D + + + H + Sbjct: 276 GLRETPS---DEVEAMGIERTAKAIDESDVVLWILDGSEPLEIPDRPLTEKLSGKPH--I 330 Query: 319 LALNKWDM--VSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEI 374 +ALNK D+ D+ T K LP+ ++ IS + GLD+L +++++ Sbjct: 331 VALNKSDLPKAFDE--------TDIAKLLPE---SWVIRISAQEKRGLDELKEAIVDL 377 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 48/158 (30%), Positives = 80/158 (50%), Gaps = 2/158 (1%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKS+L N L+++ A+V + PG TRD + G+ ++DTAG+ + Sbjct: 222 VALVGRPNVGKSSLLNALLRESRAIVTSIPGTTRDVIEEVFTHKGIPLRLMDTAGLRETP 281 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + ++T AI+E+ ++L+++D + D +T L K P I+ NK D Sbjct: 282 SDEVEAMGIERTAKAIDESDVVLWILDGSEPLEIPDRPLTEKLSGK--PHIVALNKSDLP 339 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKI 162 A L ++ ISA+ G EL I + Sbjct: 340 KAFDETDIAKLLPESWVIRISAQEKRGLDELKEAIVDL 377 >gi|291526551|emb|CBK92138.1| tRNA modification GTPase trmE [Eubacterium rectale DSM 17629] Length = 458 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 48/157 (30%), Positives = 85/157 (54%), Gaps = 4/157 (2%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 I+G PN GKS+L N LV + A+V + G TRD L Q I G+ N+VDTAGI ++ Sbjct: 226 IIGKPNAGKSSLLNVLVGSERAIVTDIAGTTRDVLEEQINIGGITLNLVDTAGIRSTEDV 285 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 + E A +EA LI++++DS + D+ I +F++ K I++ + + ++++ Sbjct: 286 VEKIGVKKAMEHA-DEADLIIYVVDSSVVLDDNDYDIINFIKDKKAVILLNKSDLASKVS 344 Query: 127 QRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 + ++ K ++ +SA+ G L I ++F Sbjct: 345 ADDIKKLVD---KTVISVSAKESSGIDGLSDTIKEMF 378 Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 5/121 (4%) Query: 208 VVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRI 267 ++G+PN GKS+L+N L+G R + +G TRD + N + + DTAG+R + Sbjct: 226 IIGKPNAGKSSLLNVLVGSERAIVTDIAGTTRDVLEEQINIGGITLNLVDTAGIRSTEDV 285 Query: 268 TESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMV 327 E + VKK+M+ + I ++D+++ + D I++ F V+ LNK D+ Sbjct: 286 VEKI---GVKKAMEHADEADLIIYVVDSSVVLDDNDYDIIN--FIKDKKAVILLNKSDLA 340 Query: 328 S 328 S Sbjct: 341 S 341 >gi|197334668|ref|YP_002156885.1| GTP-binding protein Era [Vibrio fischeri MJ11] gi|197316158|gb|ACH65605.1| GTP-binding protein Era [Vibrio fischeri MJ11] Length = 322 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 50/176 (28%), Positives = 90/176 (51%), Gaps = 6/176 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N+++ +K+++ P TR R+ G VDT G+ + Sbjct: 31 IAIVGRPNVGKSTLLNQILGQKISITSRKPQTTRHRIMGVDTDGDYQAIYVDTPGLHIEE 90 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN ++++ +L+LFL+D TP D + + L+K P +++ NK+D Sbjct: 91 KRAINRLMNRAANSSLSDVNLVLFLVDG-THWTPDDEMVLNKLKKSEFPTVLLVNKVDNV 149 Query: 125 IAQRNFYE-----IYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 +++ +DF ++V ISA+ +H ++ + + + P E + Sbjct: 150 KDKKDVMTHLQEMTEKMDFVDVVPISAKTGSNVDVVHKLVREHLPKAVHHFPEEYV 205 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 51/179 (28%), Positives = 84/179 (46%), Gaps = 10/179 (5%) Query: 189 ITSEGKS-SVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWN 247 SEGKS +V + IA+VGRPNVGKSTL+N++LG +T + TR + Sbjct: 13 FASEGKSEAVSDNQHCGFIAIVGRPNVGKSTLLNQILGQKISITSRKPQTTRHRIMGVDT 72 Query: 248 WKNHPIEIFDTAGMR-KPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRI 306 ++ DT G+ + R L + S+ V + L+D T + D + Sbjct: 73 DGDYQAIYVDTPGLHIEEKRAINRLMNRAANSSLSDVNLV---LFLVDGT-HWTPDDEMV 128 Query: 307 VDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLD 365 ++ + + VL +NK D V DK +++ L+ K + + + IS +TG +D Sbjct: 129 LNKLKKSEFPTVLLVNKVDNVKDKKDVMTHLQEMTEK----MDFVDVVPISAKTGSNVD 183 >gi|78187867|ref|YP_375910.1| tRNA modification GTPase TrmE [Chlorobium luteolum DSM 273] gi|123582460|sp|Q3B1B4|MNME_PELLD RecName: Full=tRNA modification GTPase mnmE gi|78167769|gb|ABB24867.1| tRNA modification GTPase trmE [Chlorobium luteolum DSM 273] Length = 473 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 55/213 (25%), Positives = 105/213 (49%), Gaps = 22/213 (10%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 +S+ + + GRPN GKSTL+N+LLG R + G TRD + + + + DTA Sbjct: 227 LSEGVSTVIAGRPNAGKSTLLNKLLGEERSIVSHMPGTTRDYIEECFVYDKTMFRLTDTA 286 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHA--- 316 G+R+ E +E + +++S + + + + +LD + +++ + + GH Sbjct: 287 GLRESE---EDVEHEGIERSYRKISEADLILYMLDVSGEGFREE-AVSAAALCAGHPEAR 342 Query: 317 VVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDD---LMVSVLE 373 ++L NK D+V D + L T A P + ++ R+GEG+++ LM S++E Sbjct: 343 MILLANKTDLVKDSALRIAALETAA--GSPVV------PMAARSGEGIEELKLLMASMVE 394 Query: 374 -INKLWKTRITTSYLNSWLQKTQLQNPPPTIFN 405 ++KL + + + L + L+N + N Sbjct: 395 GLDKLHEASVLVTSLRHY---EALRNASDALHN 424 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 69/119 (57%), Gaps = 5/119 (4%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 I G PN GKSTL N+L+ ++ ++V + PG TRD + + + +F + DTAG+ + + Sbjct: 235 IAGRPNAGKSTLLNKLLGEERSIVSHMPGTTRDYIEECFVYDKTMFRLTDTAGLRESEE- 293 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIP---IIIVSNKMD 122 + + +++ I+EA LIL+++D +G + A+++ P +I+++NK D Sbjct: 294 DVEHEGIERSYRKISEADLILYMLDV-SGEGFREEAVSAAALCAGHPEARMILLANKTD 351 >gi|251800245|ref|YP_003014976.1| tRNA modification GTPase TrmE [Paenibacillus sp. JDR-2] gi|247547871|gb|ACT04890.1| tRNA modification GTPase TrmE [Paenibacillus sp. JDR-2] Length = 459 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 51/159 (32%), Positives = 89/159 (55%), Gaps = 5/159 (3%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AIVG PNVGKS+L N L ++ A+V + PG TRD + +N + ++DTAGI + N Sbjct: 225 AIVGRPNVGKSSLLNMLAQENKAIVTDIPGTTRDVIEEYVTLNHIPLRLLDTAGIRE-TN 283 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 + + +++ A+ EA LILF++++ I D A+ ++ + + +II + +++++ Sbjct: 284 DVVERIGVERSHNALEEADLILFVLNNNEPIHEDDRALLEKVKDRQLILIINKSDLESKL 343 Query: 126 AQRNFYEIYSL-DFKEIVEISAEHDLGTSELHSVIFKIF 163 EI +L D + IV +S + G L I K+F Sbjct: 344 ---EMAEIEALIDEERIVRMSVREEDGLDRLEKAISKLF 379 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 61/207 (29%), Positives = 104/207 (50%), Gaps = 22/207 (10%) Query: 167 YPNHPLEMIENNKRNEESPK--ENITSEGKSSVKNISKPLR----IAVVGRPNVGKSTLI 220 YP H +E + + E+S E I K++ N K LR A+VGRPNVGKS+L+ Sbjct: 181 YPEHDVEDLTSAYIREQSGSALEEIGKLLKTA--NEGKILREGIMTAIVGRPNVGKSSLL 238 Query: 221 NRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSM 280 N L N+ + G TRD + + P+ + DTAG+R+ + + E + V++S Sbjct: 239 NMLAQENKAIVTDIPGTTRDVIEEYVTLNHIPLRLLDTAGIRETNDVVERI---GVERSH 295 Query: 281 QSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTK 340 ++ + + +L+ P + D +++ V + ++L +NK D+ S KL + + Sbjct: 296 NALEEADLILFVLNNNEPIHEDDRALLEKVKD--RQLILIINKSDLES-KLEMAE----- 347 Query: 341 AIKNLPQIGDIYINTISGRTGEGLDDL 367 I+ L I + I +S R +GLD L Sbjct: 348 -IEAL--IDEERIVRMSVREEDGLDRL 371 >gi|122701639|emb|CAL88209.1| GTPase [Helicobacter pylori] Length = 170 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 52/161 (32%), Positives = 83/161 (51%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFN L ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNHLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFSISVSHNRGISALIDAIL 163 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 49/171 (28%), Positives = 82/171 (47%), Gaps = 12/171 (7%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L N L +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNHLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEIN 375 D +DK + R A + I+ R L D ++S L +N Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFSISVSHNRGISALIDAILSALNLN 169 >gi|91227851|ref|ZP_01262024.1| GTP-binding protein Era [Vibrio alginolyticus 12G01] gi|269965786|ref|ZP_06179883.1| GTP-binding protein [Vibrio alginolyticus 40B] gi|91188361|gb|EAS74657.1| GTP-binding protein Era [Vibrio alginolyticus 12G01] gi|269829654|gb|EEZ83891.1| GTP-binding protein [Vibrio alginolyticus 40B] Length = 320 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 48/150 (32%), Positives = 81/150 (54%), Gaps = 8/150 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N+++ +K+++ P TR R+ G VDT G+ + Sbjct: 29 IAIVGRPNVGKSTLLNKILGQKISITSRKPQTTRHRIMGVDTDGDYQAIYVDTPGLHIEE 88 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN ++++ +L+ FL+D T D + + L+K N P+++ NK+D Sbjct: 89 KRAINRLMNRAANSSLSDVNLVFFLVDG-THWTKDDEMVLTKLQKSNFPVVLCVNKVDN- 146 Query: 125 IAQRNFYEIY------SLDFKEIVEISAEH 148 + RN ++ +DF ++V ISA+ Sbjct: 147 VQDRNDVMLHMAEMSKKMDFVDVVPISAKQ 176 Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 39/130 (30%), Positives = 63/130 (48%), Gaps = 5/130 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMR-KP 264 IA+VGRPNVGKSTL+N++LG +T + TR + ++ DT G+ + Sbjct: 29 IAIVGRPNVGKSTLLNKILGQKISITSRKPQTTRHRIMGVDTDGDYQAIYVDTPGLHIEE 88 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 R L + S+ V L+D T + K D ++ + + VVL +NK Sbjct: 89 KRAINRLMNRAANSSLSDVNLV---FFLVDGT-HWTKDDEMVLTKLQKSNFPVVLCVNKV 144 Query: 325 DMVSDKLNLL 334 D V D+ +++ Sbjct: 145 DNVQDRNDVM 154 >gi|319790169|ref|YP_004151802.1| GTP-binding protein Era [Thermovibrio ammonificans HB-1] gi|317114671|gb|ADU97161.1| GTP-binding protein Era [Thermovibrio ammonificans HB-1] Length = 305 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 45/121 (37%), Positives = 70/121 (57%), Gaps = 4/121 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKSTL N L+ K+A+V + P TR R+ G + +DT GI K Sbjct: 12 VAILGRPNVGKSTLLNSLLGTKVAIVTDKPQTTRHRIVGVKHLKDAQIVFLDTPGIHKEK 71 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFL---RKKNIPIIIVSNKM 121 + + MN+ + +A +ILFLID++ G+T D I + ++K+ +I+V NK+ Sbjct: 72 -FELNRYMNEIAFSVVPDADIILFLIDARQGLTEADRKILQKIGEEKRKDTKVIVVINKI 130 Query: 122 D 122 D Sbjct: 131 D 131 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 35/126 (27%), Positives = 59/126 (46%), Gaps = 6/126 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKSTL+N LLG + + TR + + K+ I DT G+ K Sbjct: 12 VAILGRPNVGKSTLLNSLLGTKVAIVTDKPQTTRHRIVGVKHLKDAQIVFLDTPGIHKEK 71 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGH---AVVLALN 322 L + + + V + + L+DA + D +I+ + V++ +N Sbjct: 72 F---ELNRYMNEIAFSVVPDADIILFLIDARQGLTEADRKILQKIGEEKRKDTKVIVVIN 128 Query: 323 KWDMVS 328 K D V+ Sbjct: 129 KIDGVN 134 >gi|160941470|ref|ZP_02088805.1| hypothetical protein CLOBOL_06361 [Clostridium bolteae ATCC BAA-613] gi|158435616|gb|EDP13383.1| hypothetical protein CLOBOL_06361 [Clostridium bolteae ATCC BAA-613] Length = 459 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 50/185 (27%), Positives = 94/185 (50%), Gaps = 4/185 (2%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 I+G PN GKS+L N L+ ++ A+V G TRD L + G+ N+VDTAGI D ++ Sbjct: 227 ILGKPNAGKSSLMNVLLGEERAIVTEIAGTTRDTLEEHIYLQGISLNVVDTAGIRDTEDV 286 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 + K D+ A +A LI++++D + D I F+R + +++ + +D + Sbjct: 287 -VEKIGVDRAMKAARDADLIIYVVDGSRPLDESDREIIEFIRDRKTIVLLNKSDLDLEVG 345 Query: 127 QRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEESPK 186 +I +++ +SA+ + G L I K+F + ++ N R++E+ + Sbjct: 346 TAELEQICG---HKVLPVSAKEEQGIELLEQEIKKLFYHGDLSFNDQVYITNARHKEALE 402 Query: 187 ENITS 191 + + S Sbjct: 403 QCLES 407 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 36/127 (28%), Positives = 70/127 (55%), Gaps = 5/127 (3%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 +S+ ++ ++G+PN GKS+L+N LLG R + +G TRD++ + + + DTA Sbjct: 219 MSEGVKTVILGKPNAGKSSLMNVLLGEERAIVTEIAGTTRDTLEEHIYLQGISLNVVDTA 278 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R + E + V ++M++ R + I ++D + P ++ D I++ F ++ Sbjct: 279 GIRDTEDVVEKI---GVDRAMKAARDADLIIYVVDGSRPLDESDREIIE--FIRDRKTIV 333 Query: 320 ALNKWDM 326 LNK D+ Sbjct: 334 LLNKSDL 340 >gi|122701611|emb|CAL88195.1| GTPase [Helicobacter pylori] Length = 170 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERTYAFSSFGAPKSFNISVSHNRGISAL 158 Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 84/172 (48%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + RT A + I+ R L D +++ L +N+ Sbjct: 125 D--NDK----EKERTYAFSSFGAPKSFNISVSHNRGISALIDAVLNALNLNQ 170 >gi|113953182|ref|YP_731887.1| tRNA modification GTPase TrmE [Synechococcus sp. CC9311] gi|123327545|sp|Q0I6N5|MNME_SYNS3 RecName: Full=tRNA modification GTPase mnmE gi|113880533|gb|ABI45491.1| tRNA modification GTPase TrmE [Synechococcus sp. CC9311] Length = 463 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 52/178 (29%), Positives = 90/178 (50%), Gaps = 4/178 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKS+L N L +++ A+V + PG TRD L + +++GV ++DTAGI Sbjct: 230 VALVGRPNVGKSSLLNLLSRRERAIVTDLPGTTRDLLESEIVLDGVPITLLDTAGIRATS 289 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N ++ K ++ A+ A L+L L D G + D A+ + + + +P + V NK D Sbjct: 290 N-AVEKLGIARSRDALASADLVLLLFDLAQGWSDDDQALFALI-PEGVPCLRVGNKADLP 347 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 + E + + V +SA G L + + PL + N ++++ Sbjct: 348 LKAEPVAETVAASVAD-VRLSAVTGDGEQALVQAVLERCG-ALGEQPLLLALNQRQSD 403 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 33/91 (36%), Positives = 49/91 (53%), Gaps = 3/91 (3%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 LR+A+VGRPNVGKS+L+N L R + G TRD + PI + DTAG+R Sbjct: 228 LRVALVGRPNVGKSSLLNLLSRRERAIVTDLPGTTRDLLESEIVLDGVPITLLDTAGIRA 287 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLD 294 S E L + +S ++ + + ++L D Sbjct: 288 TSNAVEKL---GIARSRDALASADLVLLLFD 315 >gi|309803256|ref|ZP_07697353.1| ribosome biogenesis GTPase Era [Lactobacillus iners LactinV 11V1-d] gi|309807561|ref|ZP_07701513.1| ribosome biogenesis GTPase Era [Lactobacillus iners LactinV 01V1-a] gi|308164764|gb|EFO67014.1| ribosome biogenesis GTPase Era [Lactobacillus iners LactinV 11V1-d] gi|308169167|gb|EFO71233.1| ribosome biogenesis GTPase Era [Lactobacillus iners LactinV 01V1-a] Length = 300 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 57/169 (33%), Positives = 86/169 (50%), Gaps = 11/169 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VGRPNVGKSTL+N L+G + +Q TR+ +S + N I DT G+ KP Sbjct: 11 VALVGRPNVGKSTLLNYLVGEKVAIMSNQPQTTRNKISGIYTNDNEQIIFIDTPGIHKPK 70 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +L+ K S ++ E + ++D P K D+ I+D + N V L +NK D Sbjct: 71 N---NLDDFMDKSSYSALNDVEAVLFMVDPE-PAGKGDMFIIDLLKNVACPVFLIINKID 126 Query: 326 MVS-DKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 V DKL + D K +K I IS R G +DDL+ ++++ Sbjct: 127 TVHPDKLLPIIDSYNKLVKFAEII------PISARQGNNIDDLIKTLVK 169 Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 49/146 (33%), Positives = 78/146 (53%), Gaps = 6/146 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTL N LV +K+A++ N P TR+++ G + +DT GI K Sbjct: 11 VALVGRPNVGKSTLLNYLVGEKVAIMSNQPQTTRNKISGIYTNDNEQIIFIDTPGIHKPK 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N ++ M+ + A+N+ +LF++D + D I L+ P+ ++ NK+DT Sbjct: 71 N-NLDDFMDKSSYSALNDVEAVLFMVDPEPA-GKGDMFIIDLLKNVACPVFLIINKIDTV 128 Query: 125 IAQRNFYEIYSLD----FKEIVEISA 146 + I S + F EI+ ISA Sbjct: 129 HPDKLLPIIDSYNKLVKFAEIIPISA 154 >gi|162448238|ref|YP_001621370.1| tRNA modification GTPase TrmE [Acholeplasma laidlawii PG-8A] gi|189036193|sp|A9NE34|MNME_ACHLI RecName: Full=tRNA modification GTPase mnmE gi|161986345|gb|ABX81994.1| tRNA modification GTPase [Acholeplasma laidlawii PG-8A] Length = 448 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 57/158 (36%), Positives = 84/158 (53%), Gaps = 12/158 (7%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PNVGKS+L N L+ ++ A+V + G TRD + ++GV ++DTAGI D + Sbjct: 224 IVGRPNVGKSSLLNALLNEERAIVSDIAGTTRDTIDAFVNLDGVTLQLIDTAGIRDALD- 282 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 +I K D++ AI+EA L+L ++D +T D + + KN II+ NK D Sbjct: 283 TIEKIGVDRSRKAIHEAELVLLVLDLSQKLTKEDEMLLTLTEHKN--RIIIGNKKDL--- 337 Query: 127 QRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFK 164 ++ EI + V+IS G S L S I K K Sbjct: 338 -PSYLEIDT-----NVQISTLEKEGLSVLESEILKTLK 369 Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 33/104 (31%), Positives = 60/104 (57%), Gaps = 3/104 (2%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 I + ++ +VGRPNVGKS+L+N LL R + +G TRD++ N +++ DTA Sbjct: 216 IREGVKTVIVGRPNVGKSSLLNALLNEERAIVSDIAGTTRDTIDAFVNLDGVTLQLIDTA 275 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 G+R +++E+ V +S +++ E +++LD + K+D Sbjct: 276 GIRDA---LDTIEKIGVDRSRKAIHEAELVLLVLDLSQKLTKED 316 >gi|110597255|ref|ZP_01385543.1| tRNA modification GTPase TrmE:Small GTP-binding protein domain:GTP-binding [Chlorobium ferrooxidans DSM 13031] gi|110341091|gb|EAT59559.1| tRNA modification GTPase TrmE:Small GTP-binding protein domain:GTP-binding [Chlorobium ferrooxidans DSM 13031] Length = 474 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 55/190 (28%), Positives = 96/190 (50%), Gaps = 19/190 (10%) Query: 208 VVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRI 267 + GRPN GKSTL+N LLG R + G TRD + + + + DTAG+R+ Sbjct: 236 IAGRPNAGKSTLLNTLLGLERSIVSHMPGTTRDYIEECFLYNKTMFRLTDTAGLREAE-- 293 Query: 268 TESLEQKTVKKSMQSVRTCETTIVLLDATI-PFEKQDLRIVD--SVFNTGHAVVLALNKW 324 E++E + VK+S + + + + +LD T+ + + RI++ S + +V A NK Sbjct: 294 -EAVEHEGVKRSYRKIAEADLIVYILDLTLDDYADEVARILEFKSEYRNARMIV-AANKI 351 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLD---DLMVS-VLEINKLWKT 380 D+ S+ +Q+LR + + IS GEGL+ +LM + V+ ++KL + Sbjct: 352 DLASESPERIQELR--------EATGCDVCGISAAKGEGLETLKELMSTMVVGLDKLHEA 403 Query: 381 RITTSYLNSW 390 + + L + Sbjct: 404 SVLVTSLRHY 413 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/122 (31%), Positives = 68/122 (55%), Gaps = 11/122 (9%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 I G PN GKSTL N L+ + ++V + PG TRD + + N +F + DTAG+ + + Sbjct: 236 IAGRPNAGKSTLLNTLLGLERSIVSHMPGTTRDYIEECFLYNKTMFRLTDTAGLREAEE- 294 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHA-----ITSFLRK-KNIPIIIVSNK 120 ++ + ++ I EA LI++++D +T D+A I F + +N +I+ +NK Sbjct: 295 AVEHEGVKRSYRKIAEADLIVYILD----LTLDDYADEVARILEFKSEYRNARMIVAANK 350 Query: 121 MD 122 +D Sbjct: 351 ID 352 >gi|259500586|ref|ZP_05743488.1| GTP-binding protein Era [Lactobacillus iners DSM 13335] gi|302191277|ref|ZP_07267531.1| GTP-binding protein Era [Lactobacillus iners AB-1] gi|309805224|ref|ZP_07699276.1| ribosome biogenesis GTPase Era [Lactobacillus iners LactinV 09V1-c] gi|309810245|ref|ZP_07704090.1| ribosome biogenesis GTPase Era [Lactobacillus iners SPIN 2503V10-D] gi|312871783|ref|ZP_07731871.1| ribosome biogenesis GTPase Era [Lactobacillus iners LEAF 3008A-a] gi|312872928|ref|ZP_07732988.1| ribosome biogenesis GTPase Era [Lactobacillus iners LEAF 2062A-h1] gi|312874162|ref|ZP_07734196.1| ribosome biogenesis GTPase Era [Lactobacillus iners LEAF 2052A-d] gi|312875582|ref|ZP_07735583.1| ribosome biogenesis GTPase Era [Lactobacillus iners LEAF 2053A-b] gi|315653578|ref|ZP_07906498.1| GTP-binding protein Era [Lactobacillus iners ATCC 55195] gi|325912100|ref|ZP_08174498.1| ribosome biogenesis GTPase Era [Lactobacillus iners UPII 143-D] gi|325912581|ref|ZP_08174964.1| ribosome biogenesis GTPase Era [Lactobacillus iners UPII 60-B] gi|329920169|ref|ZP_08277000.1| ribosome biogenesis GTPase Era [Lactobacillus iners SPIN 1401G] gi|259167970|gb|EEW52465.1| GTP-binding protein Era [Lactobacillus iners DSM 13335] gi|308165458|gb|EFO67689.1| ribosome biogenesis GTPase Era [Lactobacillus iners LactinV 09V1-c] gi|308169517|gb|EFO71565.1| ribosome biogenesis GTPase Era [Lactobacillus iners SPIN 2503V10-D] gi|311088836|gb|EFQ47279.1| ribosome biogenesis GTPase Era [Lactobacillus iners LEAF 2053A-b] gi|311090232|gb|EFQ48642.1| ribosome biogenesis GTPase Era [Lactobacillus iners LEAF 2052A-d] gi|311091450|gb|EFQ49834.1| ribosome biogenesis GTPase Era [Lactobacillus iners LEAF 2062A-h1] gi|311092725|gb|EFQ51081.1| ribosome biogenesis GTPase Era [Lactobacillus iners LEAF 3008A-a] gi|315488940|gb|EFU78582.1| GTP-binding protein Era [Lactobacillus iners ATCC 55195] gi|325476050|gb|EGC79218.1| ribosome biogenesis GTPase Era [Lactobacillus iners UPII 143-D] gi|325478002|gb|EGC81131.1| ribosome biogenesis GTPase Era [Lactobacillus iners UPII 60-B] gi|328936623|gb|EGG33067.1| ribosome biogenesis GTPase Era [Lactobacillus iners SPIN 1401G] Length = 300 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 57/169 (33%), Positives = 86/169 (50%), Gaps = 11/169 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VGRPNVGKSTL+N L+G + +Q TR+ +S + N I DT G+ KP Sbjct: 11 VALVGRPNVGKSTLLNYLVGEKVAIMSNQPQTTRNKISGIYTNDNEQIIFIDTPGIHKPK 70 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +L+ K S ++ E + ++D P K D+ I+D + N V L +NK D Sbjct: 71 N---NLDDFMDKSSYSALNDVEAVLFMVDPE-PAGKGDMFIIDLLKNVACPVFLIINKID 126 Query: 326 MVS-DKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 V DKL + D K +K I IS R G +DDL+ ++++ Sbjct: 127 TVHPDKLLPIIDSYNKLVKFAEII------PISARQGNNIDDLIKTLVK 169 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 52/165 (31%), Positives = 83/165 (50%), Gaps = 6/165 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTL N LV +K+A++ N P TR+++ G + +DT GI K Sbjct: 11 VALVGRPNVGKSTLLNYLVGEKVAIMSNQPQTTRNKISGIYTNDNEQIIFIDTPGIHKPK 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N ++ M+ + A+N+ +LF++D + D I L+ P+ ++ NK+DT Sbjct: 71 N-NLDDFMDKSSYSALNDVEAVLFMVDPEPA-GKGDMFIIDLLKNVACPVFLIINKIDTV 128 Query: 125 IAQRNFYEIYSLD----FKEIVEISAEHDLGTSELHSVIFKIFKQ 165 + I S + F EI+ ISA +L + K Q Sbjct: 129 HPDKLLPIIDSYNKLVKFAEIIPISARQGNNIDDLIKTLVKYLPQ 173 >gi|242255956|gb|ACS88962.1| GTPase [Helicobacter pylori] Length = 170 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGAPKSFNISVSHNRGISAL 158 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122702237|emb|CAL88309.1| GTPase [Helicobacter pylori] Length = 170 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 52/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL++++ K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVNGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISTLIDAIL 163 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 62/120 (51%), Gaps = 4/120 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +++ ++ +K + S V+ +IP + +DL++ VF T L +NK D Sbjct: 70 LLSKEIKALNLKAAQMSDLIL---YVVNGKSIPSD-EDLKLFREVFKTNPNCFLVINKID 125 >gi|227873162|ref|ZP_03991453.1| tRNA modification GTP-binding protein TrmE [Oribacterium sinus F0268] gi|227840993|gb|EEJ51332.1| tRNA modification GTP-binding protein TrmE [Oribacterium sinus F0268] Length = 456 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 52/205 (25%), Positives = 105/205 (51%), Gaps = 16/205 (7%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + ++ +VG+PN GKS+L+N L+ ++ + + G TRD+V + + + DTA Sbjct: 216 LKEGIQTVIVGKPNAGKSSLLNCLVKADKAIVSNIPGTTRDTVEEDIRIGSLSLHLIDTA 275 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R+ I E + V ++ + + + +++LD ++P E++D +I+ ++ AVVL Sbjct: 276 GIRETEDIVEEI---GVNRAKEGIEKADCVLLVLDGSLPLEEEDRKIL-ALLEGKKAVVL 331 Query: 320 ALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWK 379 LNK DK ++LQ + + P + IS + G G+++L + E+ Sbjct: 332 -LNKM----DKESILQKEELEKLSGFP------VLPISAKEGRGMEELGQKLEELFYTGS 380 Query: 380 TRITT-SYLNSWLQKTQLQNPPPTI 403 +T +Y++S Q L+ + Sbjct: 381 LSFSTETYIHSERQIAALEEAKSAL 405 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 52/158 (32%), Positives = 80/158 (50%), Gaps = 6/158 (3%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PN GKS+L N LVK A+V N PG TRD + I + +++DTAGI + ++ Sbjct: 224 IVGKPNAGKSSLLNCLVKADKAIVSNIPGTTRDTVEEDIRIGSLSLHLIDTAGIRETEDI 283 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR-I 125 +N E I +A +L ++D + D I + L K +++ NKMD I Sbjct: 284 VEEIGVNRAKE-GIEKADCVLLVLDGSLPLEEEDRKILALLEGKKAVVLL--NKMDKESI 340 Query: 126 AQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 Q+ E+ L ++ ISA+ G EL + ++F Sbjct: 341 LQKE--ELEKLSGFPVLPISAKEGRGMEELGQKLEELF 376 >gi|122701567|emb|CAL88173.1| GTPase [Helicobacter pylori] Length = 170 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 52/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL++++ K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVNGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 62/120 (51%), Gaps = 4/120 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +++ ++ +K + S V+ +IP + +DL++ VF T L +NK D Sbjct: 70 LLSKEIKALNLKAAQMSDLIL---YVVNGKSIPSD-EDLKLFREVFKTNPNCFLVINKID 125 >gi|242255914|gb|ACS88941.1| GTPase [Helicobacter pylori] Length = 170 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 52/161 (32%), Positives = 83/161 (51%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINSNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGIGALIDAIL 163 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 84/172 (48%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINSNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D ++S L++N+ Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGIGALIDAILSALDLNQ 170 >gi|188996901|ref|YP_001931152.1| tRNA modification GTPase TrmE [Sulfurihydrogenibium sp. YO3AOP1] gi|188931968|gb|ACD66598.1| tRNA modification GTPase TrmE [Sulfurihydrogenibium sp. YO3AOP1] Length = 447 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 42/127 (33%), Positives = 76/127 (59%), Gaps = 5/127 (3%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 I + +++A+VGRPNVGKS+L N L+GY R + G TRD + S K+ P+ + DTA Sbjct: 212 IKEGIKLAIVGRPNVGKSSLFNALVGYERAIVSEIQGTTRDFIEESLKIKDIPVILLDTA 271 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R + +E+ ++K+ + + + + ++DA+ F ++D +I D + + H +V Sbjct: 272 GLRDTE---DKIEKIGIEKAQEKINEADIILFVIDASSGFTEEDKKIYDKIKDKPHIIV- 327 Query: 320 ALNKWDM 326 +NK D+ Sbjct: 328 -VNKSDL 333 Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 51/130 (39%), Positives = 75/130 (57%), Gaps = 3/130 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKS+LFN LV + A+V G TRD + I + ++DTAG+ D + Sbjct: 218 LAIVGRPNVGKSSLFNALVGYERAIVSEIQGTTRDFIEESLKIKDIPVILLDTAGLRDTE 277 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + I K ++ + INEA +ILF+ID+ +G T + + + K+ P IIV NK D Sbjct: 278 D-KIEKIGIEKAQEKINEADIILFVIDASSGFT--EEDKKIYDKIKDKPHIIVVNKSDLN 334 Query: 125 IAQRNFYEIY 134 +F+E Y Sbjct: 335 NKPIDFFEKY 344 >gi|294340984|emb|CAZ89379.1| GTP-binding protein era [Thiomonas sp. 3As] Length = 301 Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 55/162 (33%), Positives = 81/162 (50%), Gaps = 9/162 (5%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AIVG PNVGKSTL N LV K+++ + TR R+ G F VDT G Sbjct: 14 TVAIVGRPNVGKSTLLNALVGAKVSITSHKAQTTRHRILGVTTRGASQFAFVDTPGFQTQ 73 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 ++ + MN A++E L+L+++++ I P D + L + P+I V NK+D Sbjct: 74 HMHALNRAMNRTVTGALSEVDLVLWVLEA-GKILPQDRTVLEVL-PDDRPVIAVVNKLD- 130 Query: 124 RIAQRN-----FYEIYSL-DFKEIVEISAEHDLGTSELHSVI 159 RI R E+ L F EIV +SA+ L S++ Sbjct: 131 RITPREKLLPWLAELGQLRKFAEIVPMSAQKKADAPRLLSIM 172 Score = 40.0 bits (92), Expect = 0.90, Method: Compositional matrix adjust. Identities = 18/37 (48%), Positives = 26/37 (70%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 +A+VGRPNVGKSTL+N L+G +T ++ TR + Sbjct: 15 VAIVGRPNVGKSTLLNALVGAKVSITSHKAQTTRHRI 51 >gi|261749388|ref|YP_003257073.1| tRNA modification GTPase [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497480|gb|ACX83930.1| tRNA modification GTPase [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 463 Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 57/194 (29%), Positives = 105/194 (54%), Gaps = 18/194 (9%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKSTLFN ++K+ +++ + G TRD + G+ ++NG+ F+ VDTAGI + K Sbjct: 225 VAIIGEPNVGKSTLFNYVIKENRSIISHIEGTTRDSIEGEFVLNGIHFHFVDTAGIRETK 284 Query: 65 N----CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLR--KKNIP---II 115 + + K M I E+ ++L+L ++ I ++ K P I+ Sbjct: 285 DPIEIMGVQKTME-----KIQESQVLLYLFEASTKEKKKQKKILHEIQLLHKKYPLKKIL 339 Query: 116 IVSNKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 ++NK D + ++FY+I S EISA++ G ++ + +F +K + + Sbjct: 340 AIANKSDVS-SFKDFYKIKS-KIPYFFEISAKNHHGIKKMLYTLSNLFIKKLQEKNIIVT 397 Query: 176 ENNKRNEESPKENI 189 +N R+ E+ K+++ Sbjct: 398 QN--RHYEALKKSL 409 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/97 (31%), Positives = 53/97 (54%), Gaps = 3/97 (3%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 I K + +A++G PNVGKSTL N ++ NR + G TRDS+ + DTA Sbjct: 219 IKKGIYVAIIGEPNVGKSTLFNYVIKENRSIISHIEGTTRDSIEGEFVLNGIHFHFVDTA 278 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDAT 296 G+R+ + +E V+K+M+ ++ + + L +A+ Sbjct: 279 GIRETK---DPIEIMGVQKTMEKIQESQVLLYLFEAS 312 >gi|15643610|ref|NP_228656.1| GTP-binding protein Era [Thermotoga maritima MSB8] gi|8134443|sp|Q9WZV1|ERA_THEMA RecName: Full=GTPase Era gi|4981380|gb|AAD35929.1|AE001751_9 conserved hypothetical protein [Thermotoga maritima MSB8] Length = 300 Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 90/169 (53%), Gaps = 9/169 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+ G+PNVGKST IN ++G ++ + TR+ ++ + K+ I DT G+ KP Sbjct: 8 VALAGKPNVGKSTFINAVMGRKVVIVSDKPQTTRNRINCIYTDKDSQIIFVDTPGIHKP- 66 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + VK ++Q+++ + + +LDA F K D + V ++G ++A+NK D Sbjct: 67 --LHRLGEYMVKAAVQALKGVDLVLFMLDAADGFTKTDEHVAKIVNDSGTKTIIAVNKID 124 Query: 326 MVS-DKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 + +K + +L ++N+ + ++ IS GEG+ +++ + E Sbjct: 125 VAGEEKAKAVGELAKSMVENV-----VSVHYISALKGEGVFEVLEKIKE 168 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 1/119 (0%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+ G PNVGKST N ++ +K+ +V + P TR+R+ VDT GI Sbjct: 8 VALAGKPNVGKSTFINAVMGRKVVIVSDKPQTTRNRINCIYTDKDSQIIFVDTPGIHKPL 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + + + M A+ L+LF++D+ G T D + + II NK+D Sbjct: 68 H-RLGEYMVKAAVQALKGVDLVLFMLDAADGFTKTDEHVAKIVNDSGTKTIIAVNKIDV 125 >gi|122702291|emb|CAL88336.1| GTPase [Helicobacter pylori] Length = 170 Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGTPKSFNISVSHNRGISAL 158 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|28899345|ref|NP_798950.1| GTP-binding protein Era [Vibrio parahaemolyticus RIMD 2210633] gi|153839957|ref|ZP_01992624.1| GTP-binding protein Era [Vibrio parahaemolyticus AQ3810] gi|260365942|ref|ZP_05778432.1| GTP-binding protein Era [Vibrio parahaemolyticus K5030] gi|260878964|ref|ZP_05891319.1| GTP-binding protein Era [Vibrio parahaemolyticus AN-5034] gi|260898319|ref|ZP_05906815.1| GTP-binding protein Era [Vibrio parahaemolyticus Peru-466] gi|260899640|ref|ZP_05908035.1| GTP-binding protein Era [Vibrio parahaemolyticus AQ4037] gi|31340053|sp|Q87LP0|ERA_VIBPA RecName: Full=GTPase Era gi|28807581|dbj|BAC60834.1| GTP-binding protein Era [Vibrio parahaemolyticus RIMD 2210633] gi|149746516|gb|EDM57505.1| GTP-binding protein Era [Vibrio parahaemolyticus AQ3810] gi|308085246|gb|EFO34941.1| GTP-binding protein Era [Vibrio parahaemolyticus Peru-466] gi|308090470|gb|EFO40165.1| GTP-binding protein Era [Vibrio parahaemolyticus AN-5034] gi|308110555|gb|EFO48095.1| GTP-binding protein Era [Vibrio parahaemolyticus AQ4037] gi|308113214|gb|EFO50754.1| GTP-binding protein Era [Vibrio parahaemolyticus K5030] Length = 320 Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 48/149 (32%), Positives = 81/149 (54%), Gaps = 8/149 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N+++ +K+++ P TR R+ G VDT G+ + Sbjct: 29 IAIVGRPNVGKSTLLNKILGQKISITSRKPQTTRHRIMGVDTDGDYQAIYVDTPGLHIEE 88 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN ++++ +L+ FL+D T D + + L+K N P+++ NK+D Sbjct: 89 KRAINRLMNRAANSSLSDVNLVFFLVDG-THWTKDDEMVLTKLQKSNFPVVLCVNKVDN- 146 Query: 125 IAQRNFYEIY------SLDFKEIVEISAE 147 + RN ++ +DF ++V ISA+ Sbjct: 147 VQDRNEVMLHMAEMSKKMDFVDVVPISAK 175 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/126 (30%), Positives = 60/126 (47%), Gaps = 5/126 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMR-KP 264 IA+VGRPNVGKSTL+N++LG +T + TR + ++ DT G+ + Sbjct: 29 IAIVGRPNVGKSTLLNKILGQKISITSRKPQTTRHRIMGVDTDGDYQAIYVDTPGLHIEE 88 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 R L + S+ V L+D T + K D ++ + + VVL +NK Sbjct: 89 KRAINRLMNRAANSSLSDVNLV---FFLVDGT-HWTKDDEMVLTKLQKSNFPVVLCVNKV 144 Query: 325 DMVSDK 330 D V D+ Sbjct: 145 DNVQDR 150 >gi|18075553|emb|CAD11172.1| GTP-binding protein [Helicobacter pylori] gi|122700621|emb|CAL87899.1| GTPase [Helicobacter pylori] gi|122702467|emb|CAL88424.1| GTPase [Helicobacter pylori] gi|122702741|emb|CAL88560.1| GTPase [Helicobacter pylori] gi|122702823|emb|CAL88601.1| GTPase [Helicobacter pylori] Length = 170 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGAPKSFNISVSHNRGISAL 158 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|302871791|ref|YP_003840427.1| GTP-binding protein Era [Caldicellulosiruptor obsidiansis OB47] gi|302574650|gb|ADL42441.1| GTP-binding protein Era [Caldicellulosiruptor obsidiansis OB47] Length = 300 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 53/149 (35%), Positives = 84/149 (56%), Gaps = 10/149 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A++G PNVGKSTL N LV KK++++ P TR+ + G + +DT G+ K Sbjct: 8 VALIGRPNVGKSTLLNYLVGKKISIISPKPQTTRNSIKGILTLEDAQIIFIDTPGVHPPK 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDS-KAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 N + + M +E + E LIL+++++ GI P+D AI L+ P I+V NK D Sbjct: 68 N-KLGEYMVKVSEKTLKEVDLILYIVEAIDNGIGPWDEAIIEKLKDVETPKILVLNKSD- 125 Query: 124 RIAQRNFYE----IYS--LDFKEIVEISA 146 +A + E I+S L+F+ IV+I+A Sbjct: 126 -LASKENVEMLKSIFSTKLNFEFIVDIAA 153 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 36/124 (29%), Positives = 61/124 (49%), Gaps = 4/124 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKSTL+N L+G + + TR+S+ ++ I DT G+ P Sbjct: 8 VALIGRPNVGKSTLLNYLVGKKISIISPKPQTTRNSIKGILTLEDAQIIFIDTPGVHPPK 67 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATI-PFEKQDLRIVDSVFNTGHAVVLALNKW 324 K +K+++ V + +D I P+ D I++ + + +L LNK Sbjct: 68 NKLGEYMVKVSEKTLKEVDLILYIVEAIDNGIGPW---DEAIIEKLKDVETPKILVLNKS 124 Query: 325 DMVS 328 D+ S Sbjct: 125 DLAS 128 >gi|225016766|ref|ZP_03705958.1| hypothetical protein CLOSTMETH_00678 [Clostridium methylpentosum DSM 5476] gi|224950434|gb|EEG31643.1| hypothetical protein CLOSTMETH_00678 [Clostridium methylpentosum DSM 5476] Length = 454 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 55/211 (26%), Positives = 108/211 (51%), Gaps = 17/211 (8%) Query: 202 KPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPI-EIFDTAG 260 + + A+VG+PNVGKSTL+N L GY + + +G TRD V + + I + DTAG Sbjct: 217 QGVETAIVGKPNVGKSTLMNLLAGYQKSIVTEIAGTTRDVVEEAVDIGGGIILRLADTAG 276 Query: 261 MRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLA 320 +R+ + E + V ++ + +++ + L D++ P E+QD ++ + +G V+ Sbjct: 277 IRETEDLVERI---GVDRAKERIQSASLVLALFDSSEPVEEQDASFIEQL--SGFPVIAV 331 Query: 321 LNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKT 380 +NK D+ + +++L DL K + ++ +IS + EG++ L S+ ++ ++ + Sbjct: 332 VNKSDLPA-RIDL--DLLKKKFR--------WVVSISAKQNEGIEQLKESIFDLLQMEEI 380 Query: 381 RITTSYLNSWLQKTQLQNPPPTIFNRYNRLK 411 L + Q+ QN + + LK Sbjct: 381 DGNAPMLANERQRVCAQNAENYLGEAIDALK 411 Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 56/177 (31%), Positives = 89/177 (50%), Gaps = 8/177 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAII-NGVIFNIVDTAGIADGK 64 AIVG PNVGKSTL N L + ++V G TRD + I G+I + DTAGI + + Sbjct: 222 AIVGKPNVGKSTLMNLLAGYQKSIVTEIAGTTRDVVEEAVDIGGGIILRLADTAGIRETE 281 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRK-KNIPIIIVSNKMDT 123 + + + D+ + I A L+L L DS P + SF+ + P+I V NK D Sbjct: 282 DL-VERIGVDRAKERIQSASLVLALFDSS---EPVEEQDASFIEQLSGFPVIAVVNKSD- 336 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + R ++ F+ +V ISA+ + G +L IF + + + + M+ N ++ Sbjct: 337 -LPARIDLDLLKKKFRWVVSISAKQNEGIEQLKESIFDLLQMEEIDGNAPMLANERQ 392 >gi|239993709|ref|ZP_04714233.1| GTP-binding protein Era [Alteromonas macleodii ATCC 27126] Length = 303 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 49/162 (30%), Positives = 82/162 (50%), Gaps = 6/162 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL NRL+ +K+++ P TR R+ G VDT G+ + Sbjct: 11 VAIVGRPNVGKSTLLNRLLGQKVSITSRKPQTTRHRILGIDTDGDYQAIYVDTPGLHQDE 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN ++ E L+LF+++ D + S +++ N+P ++ NKMD Sbjct: 71 KRAINRYMNRAASSSLAEVGLVLFVVEGDR-FNAEDEMVLSKVKQANLPCYLIVNKMDKV 129 Query: 125 IAQRNFY-EIYSLD----FKEIVEISAEHDLGTSELHSVIFK 161 + NF + L F+ ++ ISA+ E+ ++ K Sbjct: 130 EDKENFMVHLKKLGEKHPFEHMIPISAKQGRMVDEIRELVAK 171 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 51/172 (29%), Positives = 78/172 (45%), Gaps = 14/172 (8%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV-SISWNWKNHPIEIFDTAGMRKP 264 +A+VGRPNVGKSTL+NRLLG +T + TR + I + I + DT G+ + Sbjct: 11 VAIVGRPNVGKSTLLNRLLGQKVSITSRKPQTTRHRILGIDTDGDYQAIYV-DTPGLHQD 69 Query: 265 SRITESLEQKTVKKSMQ---SVRTCETTIVLLDATIP-FEKQDLRIVDSVFNTGHAVVLA 320 E++ + + M S E +VL F +D ++ V L Sbjct: 70 -------EKRAINRYMNRAASSSLAEVGLVLFVVEGDRFNAEDEMVLSKVKQANLPCYLI 122 Query: 321 LNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVL 372 +NK D V DK N + L+ K+ P I I+ GR + + +L+ L Sbjct: 123 VNKMDKVEDKENFMVHLKKLGEKH-PFEHMIPISAKQGRMVDEIRELVAKSL 173 >gi|195954215|gb|ACG58813.1| YphC [Helicobacter pylori] Length = 170 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERSYAFSSFGAPKSFNISVSHNRGISAL 158 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122701613|emb|CAL88196.1| GTPase [Helicobacter pylori] Length = 170 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGAPKSFNISVSHNRGISAL 158 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 41/128 (32%), Positives = 68/128 (53%), Gaps = 7/128 (5%) Query: 200 ISKPLR-IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDT 258 I K L+ IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT Sbjct: 3 IHKTLKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDT 62 Query: 259 AGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAV 317 GM K + +++ ++ +K + S + + ++D +IP + +DL++ VF Sbjct: 63 GGMAKDALLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNC 117 Query: 318 VLALNKWD 325 L +NK D Sbjct: 118 FLVINKID 125 >gi|110798867|ref|YP_696695.1| GTP-binding protein Era [Clostridium perfringens ATCC 13124] gi|123148605|sp|Q0TNU5|ERA_CLOP1 RecName: Full=GTPase Era gi|110673514|gb|ABG82501.1| GTP-binding protein Era [Clostridium perfringens ATCC 13124] Length = 296 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 58/177 (32%), Positives = 93/177 (52%), Gaps = 9/177 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNI--VDTAGIAD 62 I IVG PNVGKSTL N L+ +K+++V N P TR+ + Q I+ G + + VDT GI Sbjct: 7 ITIVGRPNVGKSTLTNLLMGEKLSIVSNKPQTTRNNI--QTILTGEDYQMIFVDTPGIHK 64 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 K+ + + M + +I + L+LFL + + D I L+ + P+I V NK+D Sbjct: 65 PKH-KLGEYMVNSATDSIKDVDLVLFLSNPCEEVGRGDKFIIEQLKNQKAPVIFVLNKVD 123 Query: 123 TRIAQR--NFYEIYS--LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 ++ E++S DF E++ ISA T +L ++ K + +P +MI Sbjct: 124 ESSPEKVAKTLELFSKEYDFAEMIPISAMKAKNTDKLLELMVKYLPEGPKYYPDDMI 180 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 3/123 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 I +VGRPNVGKSTL N L+G + ++ TR+++ +++ + DT G+ KP Sbjct: 7 ITIVGRPNVGKSTLTNLLMGEKLSIVSNKPQTTRNNIQTILTGEDYQMIFVDTPGIHKPK 66 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + V + S++ + + L + + D I++ + N V+ LNK D Sbjct: 67 H---KLGEYMVNSATDSIKDVDLVLFLSNPCEEVGRGDKFIIEQLKNQKAPVIFVLNKVD 123 Query: 326 MVS 328 S Sbjct: 124 ESS 126 >gi|289178676|gb|ADC85922.1| GTP-binding protein era [Bifidobacterium animalis subsp. lactis BB-12] Length = 363 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 59/204 (28%), Positives = 98/204 (48%), Gaps = 24/204 (11%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTL N L+ ++A+ + P TR + G + +VDT GI + Sbjct: 56 VAVVGRPNVGKSTLINALIGMQIAIASSRPETTRKAIRGVLTTDNAQIVLVDTPGIHRPR 115 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLR------------KKNI 112 + +++ND + ++ ++ I FL+ + I P D I S LR K + Sbjct: 116 TL-LGQRLNDVVDESLADSDEIAFLLPADQEIGPGDRRILSRLRSQFATKNDDGTFKWKV 174 Query: 113 PIIIVSNKMD----TRIAQRNFYEIYSL-DFKEIVEISAEHDLGTSELHSVIFKIFKQKY 167 P+I + K+D T + + EI DF +IV +SA D E+ +V+ + Sbjct: 175 PLIAIVTKIDRLNRTELVNK-LIEINEFADFADIVPVSALGDDNLQEVRTVLI----EHL 229 Query: 168 PNHPLEMIENNKRNEESPKENITS 191 P P +M ++ EE P++ I Sbjct: 230 PEGP-QMYPTDQVTEERPEDAIAE 252 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 4/77 (5%) Query: 191 SEGKSSVKNISKPLR---IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWN 247 ++G +V ++ P R +AVVGRPNVGKSTLIN L+G + S+ TR ++ Sbjct: 39 TKGVDAVSGVT-PYRSGFVAVVGRPNVGKSTLINALIGMQIAIASSRPETTRKAIRGVLT 97 Query: 248 WKNHPIEIFDTAGMRKP 264 N I + DT G+ +P Sbjct: 98 TDNAQIVLVDTPGIHRP 114 >gi|122700627|emb|CAL87902.1| GTPase [Helicobacter pylori] Length = 170 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKAFNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERSYAFSSFGVPKSFNISVSHNRGISTL 158 Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKAFNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|262368561|ref|ZP_06061890.1| GTP-binding protein Era [Acinetobacter johnsonii SH046] gi|262316239|gb|EEY97277.1| GTP-binding protein Era [Acinetobacter johnsonii SH046] Length = 342 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 55/183 (30%), Positives = 90/183 (49%), Gaps = 20/183 (10%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYG-------QAIINGVIFNIVDT 57 +AIVG PNVGKSTL N L+ +K+++ P TR ++ G QA+ VDT Sbjct: 42 VAIVGRPNVGKSTLMNHLLGQKLSITSRKPQTTRHKIVGIDSRAKSQAV-------FVDT 94 Query: 58 AGIADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIV 117 G+ + +I K MN A+ + +L+LF++D+ T D + L+ +P+I+V Sbjct: 95 PGMHKKEVRAINKMMNRAASSALRDVNLVLFVLDADKW-TQNDELVLEKLKNAEMPVILV 153 Query: 118 SNKMDTRIAQRNFYEIYS-----LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPL 172 NK+DT + + + ++F EIV +SA L I K + P + L Sbjct: 154 INKIDTLENKNHALPLIQERAKLMNFAEIVPVSALRGANLDHLRDTIEKYLPFQPPMYSL 213 Query: 173 EMI 175 + + Sbjct: 214 DQL 216 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 48/164 (29%), Positives = 82/164 (50%), Gaps = 11/164 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS-VSISWNWKNHPIEIFDTAGMRKP 264 +A+VGRPNVGKSTL+N LLG +T + TR V I K+ + DT GM K Sbjct: 42 VAIVGRPNVGKSTLMNHLLGQKLSITSRKPQTTRHKIVGIDSRAKSQAV-FVDTPGMHK- 99 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 + ++ + + + ++R + +LDA + + D +++ + N V+L +NK Sbjct: 100 -KEVRAINKMMNRAASSALRDVNLVLFVLDAD-KWTQNDELVLEKLKNAEMPVILVINKI 157 Query: 325 DMVSDKLNLLQDLRTKA-IKNLPQIGDIYINTISGRTGEGLDDL 367 D + +K + L ++ +A + N +I +S G LD L Sbjct: 158 DTLENKNHALPLIQERAKLMNFAEIV-----PVSALRGANLDHL 196 >gi|242255876|gb|ACS88922.1| GTPase [Helicobacter pylori] Length = 170 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 52/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPNDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G + L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGINALIDAIL 163 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 63/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIP-NDEDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|222055248|ref|YP_002537610.1| GTP-binding protein Era [Geobacter sp. FRC-32] gi|259645945|sp|B9M913|ERA_GEOSF RecName: Full=GTPase Era gi|221564537|gb|ACM20509.1| GTP-binding protein Era [Geobacter sp. FRC-32] Length = 297 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 52/172 (30%), Positives = 87/172 (50%), Gaps = 7/172 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 ++I+G PNVGKSTL N+++ K+ + + P TR+R+ G + G +DT GI K Sbjct: 11 VSIIGRPNVGKSTLLNKILGDKIVITSDKPQTTRNRIQGIHNLPGCQIVFIDTPGIHRAK 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + K M D +I E +ILFL+++ + I L P+++V NK+D Sbjct: 71 S-RLNKYMVDVALSSIKEVDVILFLVEADTKPANQEETILGALASAEAPVVLVINKVDL- 128 Query: 125 IAQRNFYE---IYS--LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHP 171 +A+ + E YS F+E++ +SA T L V+ + + P P Sbjct: 129 VAKESLLEKMAAYSGLYPFREVIPVSALTGDNTGRLVQVVRDLLPEGPPYFP 180 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 39/132 (29%), Positives = 72/132 (54%), Gaps = 4/132 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 ++++GRPNVGKSTL+N++LG ++T + TR+ + N I DT G+ Sbjct: 11 VSIIGRPNVGKSTLLNKILGDKIVITSDKPQTTRNRIQGIHNLPGCQIVFIDTPGIH--- 67 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 R L + V ++ S++ + + L++A Q+ I+ ++ + VVL +NK D Sbjct: 68 RAKSRLNKYMVDVALSSIKEVDVILFLVEADTKPANQEETILGALASAEAPVVLVINKVD 127 Query: 326 MVSDKLNLLQDL 337 +V+ K +LL+ + Sbjct: 128 LVA-KESLLEKM 138 >gi|89100470|ref|ZP_01173332.1| Era [Bacillus sp. NRRL B-14911] gi|89084813|gb|EAR63952.1| Era [Bacillus sp. NRRL B-14911] Length = 309 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 49/146 (33%), Positives = 77/146 (52%), Gaps = 5/146 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 I+I+G PNVGKST NR++ +K+A++ + P TR+++ G N F +DT GI K Sbjct: 18 ISIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKVQGVLTTNDAQFIFIDTPGIHKPK 77 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + M + + E LILF+++++ G + I + PI +V NK+D Sbjct: 78 H-KLGDFMMKIAQNTLKEVDLILFMVNAEEGFGRGEEFIIEKFQNVKTPIFLVINKIDQI 136 Query: 125 IAQRNFYEIYSLD----FKEIVEISA 146 + F I S FKEI+ ISA Sbjct: 137 HPDKLFSIIESYKEKYGFKEIIPISA 162 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 34/127 (26%), Positives = 62/127 (48%), Gaps = 4/127 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 I+++GRPNVGKST +NR++G + + TR+ V + DT G+ KP Sbjct: 18 ISIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKVQGVLTTNDAQFIFIDTPGIHKPK 77 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L +K + +++ + + +++A F + + I++ N + L +NK D Sbjct: 78 H---KLGDFMMKIAQNTLKEVDLILFMVNAEEGFGRGEEFIIEKFQNVKTPIFLVINKID 134 Query: 326 MVS-DKL 331 + DKL Sbjct: 135 QIHPDKL 141 >gi|242255904|gb|ACS88936.1| GTPase [Helicobacter pylori] Length = 170 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 52/161 (32%), Positives = 83/161 (51%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGIGALIDAIL 163 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 84/172 (48%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D ++S L++N+ Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGIGALIDAILSTLDLNQ 170 >gi|225028844|ref|ZP_03718036.1| hypothetical protein EUBHAL_03131 [Eubacterium hallii DSM 3353] gi|224953840|gb|EEG35049.1| hypothetical protein EUBHAL_03131 [Eubacterium hallii DSM 3353] Length = 471 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 56/222 (25%), Positives = 111/222 (50%), Gaps = 22/222 (9%) Query: 168 PNH------PLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLIN 221 P H P +++E +K+ KE + S + I++ +R +VG+PN GKS+ +N Sbjct: 190 PEHYSLDGFPEKLLEEDKKWITIAKEMLDSYDNGRI--IAEGIRTCIVGKPNAGKSSFLN 247 Query: 222 RLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQ 281 LLG R + +G TRD++ S + I DTAG+R ES+ V+++ + Sbjct: 248 ALLGEERAIVTDIAGTTRDTLEESVTIDGITLNIVDTAGIRDTEDKVESI---GVERAKK 304 Query: 282 SVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQD-LRTK 340 + + + + L+D ++ ++D+ I+ + + ++ LNK D +++ Q L+ Sbjct: 305 EIESADLILFLMDTSVQISEEDIEILQRIRDKKK--IILLNKSDKATEESGFEQSALKEY 362 Query: 341 AIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRI 382 + P I +IS + G+G+D+ ++ + N ++ RI Sbjct: 363 ISEETPVI------SISAKYGDGIDNFIMELK--NMMFHGRI 396 Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 47/125 (37%), Positives = 67/125 (53%), Gaps = 3/125 (2%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 IVG PN GKS+ N L+ ++ A+V + G TRD L I+G+ NIVDTAGI D ++ Sbjct: 233 CIVGKPNAGKSSFLNALLGEERAIVTDIAGTTRDTLEESVTIDGITLNIVDTAGIRDTED 292 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 + ++ + I A LILFL+D+ I+ D I +R K II+ NK D Sbjct: 293 -KVESIGVERAKKEIESADLILFLMDTSVQISEEDIEILQRIRDK--KKIILLNKSDKAT 349 Query: 126 AQRNF 130 + F Sbjct: 350 EESGF 354 >gi|239622043|ref|ZP_04665074.1| GTP-binding protein Era [Bifidobacterium longum subsp. infantis CCUG 52486] gi|296454044|ref|YP_003661187.1| GTP-binding protein Era [Bifidobacterium longum subsp. longum JDM301] gi|239515234|gb|EEQ55101.1| GTP-binding protein Era [Bifidobacterium longum subsp. infantis CCUG 52486] gi|296183475|gb|ADH00357.1| GTP-binding protein Era [Bifidobacterium longum subsp. longum JDM301] Length = 354 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 61/204 (29%), Positives = 103/204 (50%), Gaps = 24/204 (11%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTL N L+ K++A+ + P TR + G + +VDT GI + Sbjct: 49 VAVVGRPNVGKSTLINALIGKQIAIASSRPETTRKAIRGILTADHAQLVLVDTPGIHRPR 108 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLR------------KKNI 112 + +++ND + ++ + ++ FL+ + I P D I S LR K I Sbjct: 109 TL-LGQRLNDVVDESLADVDVVAFLLPADQEIGPGDKRILSRLRTDFATKREDGTFKWRI 167 Query: 113 PIIIVSNKMDTRIAQR---NFYEIYSL-DFKEIVEISA-EHDLGTSELHSVIFKIFKQKY 167 P+I + K+D Q+ EI DF +IV +SA +HD +E+ +V+ + Sbjct: 168 PLIAIVTKIDELGRQQLINKLIEINDFADFSDIVPVSALKHD-NLAEVKNVLI----EHT 222 Query: 168 PNHPLEMIENNKRNEESPKENITS 191 P P +M +++ +EE P++ I Sbjct: 223 PEGP-QMYPDDQISEERPEDTIAE 245 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 6/98 (6%) Query: 192 EGKSSVKNISK---PLR---IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSIS 245 + +N++K P R +AVVGRPNVGKSTLIN L+G + S+ TR ++ Sbjct: 29 DATGETENVTKQDVPYRSGFVAVVGRPNVGKSTLINALIGKQIAIASSRPETTRKAIRGI 88 Query: 246 WNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSV 283 + + + DT G+ +P + V +S+ V Sbjct: 89 LTADHAQLVLVDTPGIHRPRTLLGQRLNDVVDESLADV 126 >gi|329768091|ref|ZP_08259600.1| tRNA modification GTPase mnmE [Gemella haemolysans M341] gi|328838246|gb|EGF87858.1| tRNA modification GTPase mnmE [Gemella haemolysans M341] Length = 460 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 43/129 (33%), Positives = 73/129 (56%), Gaps = 5/129 (3%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K I + + A++GRPNVGKS+L+N LL N+ + +G TRD + N K PI++ D Sbjct: 217 KIIKEGINTAIIGRPNVGKSSLLNNLLQENKAIVTDIAGTTRDVLEEYVNIKGVPIKLID 276 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ I +EQ VK+S +++ + + LL+++ + D ++ G Sbjct: 277 TAGIRETDDI---VEQIGVKRSKEALEKADLVLFLLNSSEELTEDDKELLK--LTEGKTT 331 Query: 318 VLALNKWDM 326 ++ LNK D+ Sbjct: 332 IVILNKLDL 340 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 51/160 (31%), Positives = 85/160 (53%), Gaps = 7/160 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+++ A+V + G TRD L I GV ++DTAGI + + Sbjct: 226 AIIGRPNVGKSSLLNNLLQENKAIVTDIAGTTRDVLEEYVNIKGVPIKLIDTAGIRETDD 285 Query: 66 CSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I +Q+ +++ A+ +A L+LFL++S +T D + K +I+ ++T+ Sbjct: 286 --IVEQIGVKRSKEALEKADLVLFLLNSSEELTEDDKELLKLTEGKTTIVILNKLDLETK 343 Query: 125 IAQRNFYEIYSLDFKE-IVEISAEHDLGTSELHSVIFKIF 163 I + E+ L + I++ S G EL I +F Sbjct: 344 I---DIAEVEKLAYNHPIIKTSMTTYKGIDELEKNIRDLF 380 >gi|18310997|ref|NP_562931.1| GTP-binding protein Era [Clostridium perfringens str. 13] gi|21263575|sp|Q8XIU8|ERA_CLOPE RecName: Full=GTPase Era gi|18145679|dbj|BAB81721.1| GTP-binding protein [Clostridium perfringens str. 13] Length = 296 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 58/177 (32%), Positives = 93/177 (52%), Gaps = 9/177 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNI--VDTAGIAD 62 I IVG PNVGKSTL N L+ +K+++V N P TR+ + Q I+ G + + VDT GI Sbjct: 7 ITIVGRPNVGKSTLTNLLMGEKLSIVSNKPQTTRNNI--QTILTGDDYQMIFVDTPGIHK 64 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 K+ + + M + +I + L+LFL + + D I L+ + P+I V NK+D Sbjct: 65 PKH-KLGEYMVNSATDSIKDVDLVLFLSNPCEEVGRGDKFIVEQLKNQKAPVIFVLNKVD 123 Query: 123 TRIAQR--NFYEIYS--LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 ++ E++S DF E++ ISA T +L ++ K + +P +MI Sbjct: 124 ESSPEKVAKTLELFSKEYDFAEMIPISAMKAKNTDKLLELMVKYLPEGPKYYPDDMI 180 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 59/123 (47%), Gaps = 3/123 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 I +VGRPNVGKSTL N L+G + ++ TR+++ ++ + DT G+ KP Sbjct: 7 ITIVGRPNVGKSTLTNLLMGEKLSIVSNKPQTTRNNIQTILTGDDYQMIFVDTPGIHKPK 66 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + V + S++ + + L + + D IV+ + N V+ LNK D Sbjct: 67 H---KLGEYMVNSATDSIKDVDLVLFLSNPCEEVGRGDKFIVEQLKNQKAPVIFVLNKVD 123 Query: 326 MVS 328 S Sbjct: 124 ESS 126 >gi|122702173|emb|CAL88277.1| GTPase [Helicobacter pylori] Length = 170 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 52/162 (32%), Positives = 84/162 (51%), Gaps = 6/162 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+ Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMT 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 K+D + Y S + IS H+ G + L I + Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGINALIDAILR 164 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMTKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|296136815|ref|YP_003644057.1| GTP-binding protein Era [Thiomonas intermedia K12] gi|295796937|gb|ADG31727.1| GTP-binding protein Era [Thiomonas intermedia K12] Length = 301 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 55/162 (33%), Positives = 81/162 (50%), Gaps = 9/162 (5%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AIVG PNVGKSTL N LV K+++ + TR R+ G F VDT G Sbjct: 14 TVAIVGRPNVGKSTLLNALVGAKVSITSHKAQTTRHRILGVTTHGASQFAFVDTPGFQTQ 73 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 ++ + MN A++E L+L+++++ I P D + L + P+I V NK+D Sbjct: 74 HMHALNRAMNRTVTGALSEVDLVLWVLEA-GKILPQDRTVLEVL-PDDRPVIAVVNKLD- 130 Query: 124 RIAQRN-----FYEIYSL-DFKEIVEISAEHDLGTSELHSVI 159 RI R E+ L F EIV +SA+ L S++ Sbjct: 131 RITPREKLLPWLAELGQLRKFAEIVPMSAQKKADAPRLLSIM 172 Score = 40.0 bits (92), Expect = 0.81, Method: Compositional matrix adjust. Identities = 36/131 (27%), Positives = 62/131 (47%), Gaps = 8/131 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VGRPNVGKSTL+N L+G +T ++ TR + DT G + + Sbjct: 15 VAIVGRPNVGKSTLLNALVGAKVSITSHKAQTTRHRILGVTTHGASQFAFVDTPGFQ--T 72 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDAT--IPFEKQDLRIVDSVFNTGHAVVLALNK 323 + +L + + ++ + + +L+A +P QD R V V V+ +NK Sbjct: 73 QHMHALNRAMNRTVTGALSEVDLVLWVLEAGKILP---QD-RTVLEVLPDDRPVIAVVNK 128 Query: 324 WDMVSDKLNLL 334 D ++ + LL Sbjct: 129 LDRITPREKLL 139 >gi|241889088|ref|ZP_04776392.1| tRNA modification GTPase TrmE [Gemella haemolysans ATCC 10379] gi|241864337|gb|EER68715.1| tRNA modification GTPase TrmE [Gemella haemolysans ATCC 10379] Length = 460 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 43/129 (33%), Positives = 73/129 (56%), Gaps = 5/129 (3%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K I + + A++GRPNVGKS+L+N LL N+ + +G TRD + N K PI++ D Sbjct: 217 KIIKEGINTAIIGRPNVGKSSLLNNLLQENKAIVTDIAGTTRDVLEEYVNIKGVPIKLID 276 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ I +EQ VK+S +++ + + LL+++ + D ++ G Sbjct: 277 TAGIRETDDI---VEQIGVKRSKEALEKADLVLFLLNSSEELTEDDKELLK--LTEGKTT 331 Query: 318 VLALNKWDM 326 ++ LNK D+ Sbjct: 332 IVILNKLDL 340 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 51/160 (31%), Positives = 85/160 (53%), Gaps = 7/160 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+++ A+V + G TRD L I GV ++DTAGI + + Sbjct: 226 AIIGRPNVGKSSLLNNLLQENKAIVTDIAGTTRDVLEEYVNIKGVPIKLIDTAGIRETDD 285 Query: 66 CSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I +Q+ +++ A+ +A L+LFL++S +T D + K +I+ ++T+ Sbjct: 286 --IVEQIGVKRSKEALEKADLVLFLLNSSEELTEDDKELLKLTEGKTTIVILNKLDLETK 343 Query: 125 IAQRNFYEIYSLDFKE-IVEISAEHDLGTSELHSVIFKIF 163 I + E+ L + I++ S G EL I +F Sbjct: 344 I---DIAEVEKLAYNHPIIKTSMTTYKGIDELEKNIRDLF 380 >gi|288574808|ref|ZP_06393165.1| GTP-binding protein Era [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570549|gb|EFC92106.1| GTP-binding protein Era [Dethiosulfovibrio peptidovorans DSM 11002] Length = 309 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 53/179 (29%), Positives = 94/179 (52%), Gaps = 8/179 (4%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 +A+VG PNVGKS+L N L++ K +V P TR+R+ A + G DT GI Sbjct: 14 VVAVVGRPNVGKSSLVNALLRCKATIVSPKPQTTRNRIRCIADVEGGQIVFTDTPGIHKP 73 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSK-AGITPYDHAITSFLRKKNIPIIIVSNKMD 122 ++ + + + D +A+++A LIL++I ++ GIT D I L+ N P+I+V NK+D Sbjct: 74 QH-RLGEAIVDSALVALDDADLILYVISAQDEGITGQDRHIIERLKNSNTPVIMVINKVD 132 Query: 123 TRIAQRN----FYEIY--SLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 +++ + Y L+ +++ +SA D+ L I + + P + +M+ Sbjct: 133 LLGSKKAKILPLIDTYRKKLNPMDVLPVSAREDINLETLMDFILEHIPEGPPMYMEDML 191 Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 46/173 (26%), Positives = 81/173 (46%), Gaps = 15/173 (8%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +AVVGRPNVGKS+L+N LL + + TR+ + + + I DT G+ KP Sbjct: 15 VAVVGRPNVGKSSLVNALLRCKATIVSPKPQTTRNRIRCIADVEGGQIVFTDTPGIHKPQ 74 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIP-FEKQDLRIVDSVFNTGHAVVLALNKW 324 L + V ++ ++ + + ++ A QD I++ + N+ V++ +NK Sbjct: 75 ---HRLGEAIVDSALVALDDADLILYVISAQDEGITGQDRHIIERLKNSNTPVIMVINKV 131 Query: 325 DMVSDK----LNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 D++ K L L+ R K + + + +S R L+ LM +LE Sbjct: 132 DLLGSKKAKILPLIDTYRKK-------LNPMDVLPVSAREDINLETLMDFILE 177 >gi|122700731|emb|CAL87954.1| GTPase [Helicobacter pylori] Length = 170 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + ++G ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALSGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISAL 158 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALSGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|325290526|ref|YP_004266707.1| GTP-binding protein Era-like-protein [Syntrophobotulus glycolicus DSM 8271] gi|324965927|gb|ADY56706.1| GTP-binding protein Era-like-protein [Syntrophobotulus glycolicus DSM 8271] Length = 305 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 50/163 (30%), Positives = 84/163 (51%), Gaps = 5/163 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +AVVGRPN GKSTL+N L+G L+ + TR+ + + I DT G+ KP Sbjct: 16 VAVVGRPNAGKSTLLNTLVGQKVLIISEKPQTTRNRIQCILTEERGQIVFIDTPGIHKPK 75 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L Q V + S+R + I ++DA++PF D +++ V +G +LALNK D Sbjct: 76 H---QLGQYMVNTAKGSLRGTDLIIYVVDASVPFGTGDEYVLNMVKESGIPSILALNKID 132 Query: 326 MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLM 368 ++S + L + + + ++ + I+ + G + L DL+ Sbjct: 133 LLSKEEILSKIIEFSQQADFKEV--VPISALQGENTKKLTDLI 173 Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 50/164 (30%), Positives = 86/164 (52%), Gaps = 13/164 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAII----NGVIFNIVDTAGI 60 +A+VG PN GKSTL N LV +K+ ++ P TR+R+ Q I+ ++F +DT GI Sbjct: 16 VAVVGRPNAGKSTLLNTLVGQKVLIISEKPQTTRNRI--QCILTEERGQIVF--IDTPGI 71 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 K+ + + M + + ++ LI++++D+ D + + +++ IP I+ NK Sbjct: 72 HKPKH-QLGQYMVNTAKGSLRGTDLIIYVVDASVPFGTGDEYVLNMVKESGIPSILALNK 130 Query: 121 MDTRIAQRNFYEIYSL----DFKEIVEISAEHDLGTSELHSVIF 160 +D + +I DFKE+V ISA T +L +IF Sbjct: 131 IDLLSKEEILSKIIEFSQQADFKEVVPISALQGENTKKLTDLIF 174 >gi|227485436|ref|ZP_03915752.1| GTP-binding protein Era [Anaerococcus lactolyticus ATCC 51172] gi|227236566|gb|EEI86581.1| GTP-binding protein Era [Anaerococcus lactolyticus ATCC 51172] Length = 295 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 51/167 (30%), Positives = 91/167 (54%), Gaps = 24/167 (14%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFN-------IVDT 57 I++VG NVGKSTL +++K+K++++ N P TRD++ +I+N +DT Sbjct: 6 ISVVGRANVGKSTLMEKILKEKISIISNKPQTTRDKI-------NIIYNDEDSQLIFIDT 58 Query: 58 AGIADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIV 117 GI +N + +++ ++ ++NE+ ++ +++D I D I LRK +PII++ Sbjct: 59 PGIQKPRNV-LQERLLSFSKDSLNESDVVTYVVDESKEIGKLDQMIIDELRKVRVPIILL 117 Query: 118 SNKMD-----TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVI 159 NK+D +N YE L F +I+ ISA L + +H+ I Sbjct: 118 INKIDLLNEEEIEEIKNLYEEVGL-FDKIIAISA---LDDTNVHTYI 160 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 68/123 (55%), Gaps = 3/123 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 I+VVGR NVGKSTL+ ++L + ++ TRD ++I +N ++ + DT G++KP Sbjct: 6 ISVVGRANVGKSTLMEKILKEKISIISNKPQTTRDKINIIYNDEDSQLIFIDTPGIQKPR 65 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + L+++ + S S+ + ++D + K D I+D + ++L +NK D Sbjct: 66 NV---LQERLLSFSKDSLNESDVVTYVVDESKEIGKLDQMIIDELRKVRVPIILLINKID 122 Query: 326 MVS 328 +++ Sbjct: 123 LLN 125 >gi|122702215|emb|CAL88298.1| GTPase [Helicobacter pylori] Length = 170 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERSYAFSSFGAPKSFNISVSHNRGISTL 158 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|269960404|ref|ZP_06174777.1| GTP-binding protein [Vibrio harveyi 1DA3] gi|269834831|gb|EEZ88917.1| GTP-binding protein [Vibrio harveyi 1DA3] Length = 320 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 48/150 (32%), Positives = 81/150 (54%), Gaps = 8/150 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N+++ +K+++ P TR R+ G VDT G+ + Sbjct: 29 IAIVGRPNVGKSTLLNKILGQKISITSRKPQTTRHRIMGVDTDGDYQAIYVDTPGLHIEE 88 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN ++++ +L+ FL+D T D + + L+K N P+++ NK+D Sbjct: 89 KRAINRLMNRAANSSLSDVNLVFFLVDG-THWTKDDEMVLTKLQKSNFPVVLCVNKVDN- 146 Query: 125 IAQRNFYEIY------SLDFKEIVEISAEH 148 + RN ++ +DF ++V ISA+ Sbjct: 147 VQDRNEVMMHMADMSKKMDFVDVVPISAKQ 176 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 45/163 (27%), Positives = 76/163 (46%), Gaps = 9/163 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMR-KP 264 IA+VGRPNVGKSTL+N++LG +T + TR + ++ DT G+ + Sbjct: 29 IAIVGRPNVGKSTLLNKILGQKISITSRKPQTTRHRIMGVDTDGDYQAIYVDTPGLHIEE 88 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 R L + S+ V L+D T + K D ++ + + VVL +NK Sbjct: 89 KRAINRLMNRAANSSLSDVNLV---FFLVDGT-HWTKDDEMVLTKLQKSNFPVVLCVNKV 144 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDL 367 D V D+ ++ + + K + + + IS + G+ +D L Sbjct: 145 DNVQDRNEVMMHMADMSKK----MDFVDVVPISAKQGKNIDVL 183 >gi|134300318|ref|YP_001113814.1| GTP-binding protein Era [Desulfotomaculum reducens MI-1] gi|134053018|gb|ABO50989.1| GTP-binding protein Era [Desulfotomaculum reducens MI-1] Length = 302 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 50/175 (28%), Positives = 85/175 (48%), Gaps = 5/175 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTL N+LV +K+A++ + P TR +++ N +DT GI + Sbjct: 13 VALVGRPNVGKSTLLNKLVGQKVAIMSDKPQTTRHKIHSVLTRNDAQMVFLDTPGIHKPR 72 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD-- 122 + + + M D A+ E + LFL+++ P D I L+ P+ ++ NK+D Sbjct: 73 H-KLGEYMVDVALGALKEVDVALFLVEASEAPGPGDQYIAEQLKGIKTPVFLMLNKVDLI 131 Query: 123 --TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 + +R L F E++ +SA L I K + +P +M+ Sbjct: 132 QREAVLERILQYKDLLPFAEVIPVSALAGENVERLIDTIIKYLPEGPQYYPADMV 186 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 81/167 (48%), Gaps = 5/167 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VGRPNVGKSTL+N+L+G + + TR + + + DT G+ KP Sbjct: 13 VALVGRPNVGKSTLLNKLVGQKVAIMSDKPQTTRHKIHSVLTRNDAQMVFLDTPGIHKPR 72 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + V ++ +++ + + L++A+ D I + + V L LNK D Sbjct: 73 H---KLGEYMVDVALGALKEVDVALFLVEASEAPGPGDQYIAEQLKGIKTPVFLMLNKVD 129 Query: 326 MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVL 372 ++ + L + L+ K + LP I ++ ++G E L D ++ L Sbjct: 130 LIQREAVLERILQYKDL--LPFAEVIPVSALAGENVERLIDTIIKYL 174 >gi|317482192|ref|ZP_07941214.1| GTP-binding protein Era [Bifidobacterium sp. 12_1_47BFAA] gi|316916330|gb|EFV37730.1| GTP-binding protein Era [Bifidobacterium sp. 12_1_47BFAA] Length = 354 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 59/204 (28%), Positives = 104/204 (50%), Gaps = 24/204 (11%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTL N L+ K++A+ + P TR + G + +VDT GI + Sbjct: 49 VAVVGRPNVGKSTLINALIGKQIAIASSRPETTRKAIRGILTADHAQLVLVDTPGIHRPR 108 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLR------------KKNI 112 + +++ND + ++ + ++ FL+ + I P D I S LR K I Sbjct: 109 TL-LGQRLNDVVDESLADVDVVAFLLPADQEIGPGDKRILSRLRTDFATKREDGTFKWRI 167 Query: 113 PIIIVSNKMDTRIAQRNFYEIYSL----DFKEIVEISA-EHDLGTSELHSVIFKIFKQKY 167 P+I + K+D Q+ ++ + DF +IV +SA +HD +E+ +V+ + Sbjct: 168 PLIAIVTKIDELGRQQLINKLIEINDFADFSDIVPVSALKHD-NLAEVKNVLI----EHT 222 Query: 168 PNHPLEMIENNKRNEESPKENITS 191 P P +M +++ +EE P++ I Sbjct: 223 PEGP-QMYPDDQISEERPEDTIAE 245 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 6/98 (6%) Query: 192 EGKSSVKNISK---PLR---IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSIS 245 + +N++K P R +AVVGRPNVGKSTLIN L+G + S+ TR ++ Sbjct: 29 DATGETENVTKQDVPYRSGFVAVVGRPNVGKSTLINALIGKQIAIASSRPETTRKAIRGI 88 Query: 246 WNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSV 283 + + + DT G+ +P + V +S+ V Sbjct: 89 LTADHAQLVLVDTPGIHRPRTLLGQRLNDVVDESLADV 126 >gi|329297706|ref|ZP_08255042.1| GTPase Era [Plautia stali symbiont] Length = 300 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 53/170 (31%), Positives = 88/170 (51%), Gaps = 12/170 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N+L+ +K+++ P TR R+ G VDT G+ + Sbjct: 11 IAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGIHTEGAYQAIYVDTPGLRMEE 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN +I + L++F+++ TP D + + LR +P+++ NK+D Sbjct: 71 KRAINRLMNRAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLRDGKVPVVLAVNKVDN- 128 Query: 125 IAQRNF------YEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYP 168 I ++ + ++F EIV ISAE T + I +I +++ P Sbjct: 129 IQDKSILLPHLQFLSQQMNFLEIVPISAE----TGKNMDAIAEITRKRLP 174 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/160 (30%), Positives = 80/160 (50%), Gaps = 7/160 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA+VGRPNVGKSTL+N+LLG +T + TR + + DT G+R Sbjct: 11 IAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGIHTEGAYQAIYVDTPGLRMEE 70 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + ++ + + + S+ E I +++ T + D +++ + + VVLA+NK D Sbjct: 71 K--RAINRLMNRAASSSIGDVELVIFVVEGT-RWTPDDEMVLNKLRDGKVPVVLAVNKVD 127 Query: 326 MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLD 365 + DK LL L+ + Q+ + I IS TG+ +D Sbjct: 128 NIQDKSILLPHLQFLS----QQMNFLEIVPISAETGKNMD 163 >gi|213692452|ref|YP_002323038.1| GTP-binding protein Era [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213523913|gb|ACJ52660.1| GTP-binding protein Era [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320458597|dbj|BAJ69218.1| GTP-binding protein [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 354 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 59/204 (28%), Positives = 104/204 (50%), Gaps = 24/204 (11%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTL N L+ K++A+ + P TR + G + +VDT GI + Sbjct: 49 VAVVGRPNVGKSTLINTLIGKQIAIASSRPETTRKAIRGILTADHAQLVLVDTPGIHRPR 108 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLR------------KKNI 112 + +++ND + ++ + ++ FL+ + I P D I S LR K I Sbjct: 109 TL-LGQRLNDVVDESLADVDVVAFLLPADQEIGPGDKRILSRLRTDFATKREDGTFKWRI 167 Query: 113 PIIIVSNKMDTRIAQRNFYEIYSL----DFKEIVEISA-EHDLGTSELHSVIFKIFKQKY 167 P+I + K+D Q+ ++ + DF +IV +SA +HD +E+ +V+ + Sbjct: 168 PLIAIVTKIDELGRQQLINKLIEINDFADFSDIVPVSALKHD-NLAEVKNVLI----EHT 222 Query: 168 PNHPLEMIENNKRNEESPKENITS 191 P P +M +++ +EE P++ I Sbjct: 223 PEGP-QMYPDDQISEERPEDTIAE 245 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 6/98 (6%) Query: 192 EGKSSVKNISK---PLR---IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSIS 245 + +N++K P R +AVVGRPNVGKSTLIN L+G + S+ TR ++ Sbjct: 29 DATGETENVTKQDVPYRSGFVAVVGRPNVGKSTLINTLIGKQIAIASSRPETTRKAIRGI 88 Query: 246 WNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSV 283 + + + DT G+ +P + V +S+ V Sbjct: 89 LTADHAQLVLVDTPGIHRPRTLLGQRLNDVVDESLADV 126 >gi|304310580|ref|YP_003810178.1| Small GTP-binding protein Era [gamma proteobacterium HdN1] gi|301796313|emb|CBL44521.1| Small GTP-binding protein Era [gamma proteobacterium HdN1] Length = 305 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 54/182 (29%), Positives = 93/182 (51%), Gaps = 7/182 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N ++ +K+++ P TR R+ G V VDT GI G Sbjct: 17 IAIVGRPNVGKSTLLNHILGQKISITSRKPQTTRHRILGIKTDGPVQAIYVDTPGIHRGG 76 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 ++ + MN ++ + L+LF++DS T D + + L + + P+I+V NK+D Sbjct: 77 EKALNRFMNRSALESVKDVDLVLFVVDS-LKWTEGDEWVLAKLARVSAPVILVVNKVDQV 135 Query: 125 IAQRNFYEIYS-----LDFKEIVEISAEHDLGTSELHSVIFK-IFKQKYPNHPLEMIENN 178 ++ + DF I +SA +EL S + K + ++++ P ++ + + Sbjct: 136 EDKKRLLPVLESLGQKRDFAAIFPLSALRGKNLAELESEVGKHLPEREFLFDPEQITDRS 195 Query: 179 KR 180 +R Sbjct: 196 QR 197 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/132 (29%), Positives = 71/132 (53%), Gaps = 9/132 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV-SISWNWKNHPIEIF--DTAGMR 262 IA+VGRPNVGKSTL+N +LG +T + TR + I + P++ DT G+ Sbjct: 17 IAIVGRPNVGKSTLLNHILGQKISITSRKPQTTRHRILGIK---TDGPVQAIYVDTPGIH 73 Query: 263 KPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALN 322 + ++L + + +++SV+ + + ++D ++ + + D ++ + V+L +N Sbjct: 74 RGGE--KALNRFMNRSALESVKDVDLVLFVVD-SLKWTEGDEWVLAKLARVSAPVILVVN 130 Query: 323 KWDMVSDKLNLL 334 K D V DK LL Sbjct: 131 KVDQVEDKKRLL 142 >gi|295698548|ref|YP_003603203.1| GTP-binding protein EngA [Candidatus Riesia pediculicola USDA] gi|291157395|gb|ADD79840.1| GTP-binding protein EngA [Candidatus Riesia pediculicola USDA] Length = 474 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 116/499 (23%), Positives = 221/499 (44%), Gaps = 92/499 (18%) Query: 34 PGITRDRLYGQAIINGVIFNIVDTAGIADGKNCSIAKQMNDQTELAINEAHLILFLIDSK 93 P TRDR + I F I+DT +++ I+ ++ +QT +A+ + ++ FL+D + Sbjct: 6 PFCTRDRNHKITKIYSQNFEIIDTGSVSNLFRDHISSKVIEQTMIAVQKCDVLFFLVDFR 65 Query: 94 AGITPYDHAITSFLRKKN-----IPIII--------------VSNKMDTRIAQRNFYEIY 134 G+ D + + L KK I +I+ + ++RI + F ++ Sbjct: 66 VGLLKEDQVLFNQLTKKKKDKRFIYLIVNFFENNDFLSKNRKIEELNNSRILKDFF--VF 123 Query: 135 SLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEESPKENITSEGK 194 +L+ K I ISA H G + L + I++ + S K++ +S G Sbjct: 124 NLNKKMIHLISALHKKGINLLMKSV---------------IQDFFSKKTSFKKSSSSSGL 168 Query: 195 SSVKNISKP--LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI-------- 244 K S +++A+VG+PNVGKSTLIN+LL NRL+ TRD++ + Sbjct: 169 EIEKKKSNGDLIKVAIVGKPNVGKSTLINKLLMENRLIVSELPETTRDNIEVIVQNSRYQ 228 Query: 245 SWNWKNHPIEIFDTAGMRK-----------PSRITESLEQKTVKKSMQSVRTCETTIVLL 293 N K + DT+G+ + PS + ++++ +++ + T++LL Sbjct: 229 QVNEKEVRYCLVDTSGITEKFWKQENIKTNPSSDQQKFSSYFGSQTIKCIKSSDITLLLL 288 Query: 294 DATIPFEKQDLR----IVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKN-LPQI 348 D+ EK+ R ++ + G + ++ NK D + + + K IKN + + Sbjct: 289 DSR---EKKLTRSENLLIHLMIEIGSSFLIVFNKLDEIPSE---FKKTFQKYIKNRMKFL 342 Query: 349 GDIYINTISGRTGEGLDDLMVSVL-------------EINKLWKTRITTSYLNSWLQKTQ 395 + + IS + DL S+ ++N L K I SYL L+K + Sbjct: 343 NFVQFHFISALYQKNFRDLFSSIRRTFYSKFIKIKKNDLNILLKKDI-ESYL--ILKKKR 399 Query: 396 LQNPPPTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFS----L 451 F+ + ++K I Q+++ +IF + + +Y++Y+ R+ + S + Sbjct: 400 FSQKKGN-FSIFKKIK-ILQVKNRLLKIIIFS--ESILSSNYEKYVEKRIYRHLSDHTKI 455 Query: 452 SGIPIRMCFQSSKNPYIKK 470 G PI++ F+ + +KK Sbjct: 456 VGRPIKIIFKKHRTKILKK 474 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 40/140 (28%), Positives = 63/140 (45%), Gaps = 22/140 (15%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRL--------YGQAIINGVIFNIVD 56 +AIVG PNVGKSTL N+L+ + +V P TRD + Y Q V + +VD Sbjct: 182 VAIVGKPNVGKSTLINKLLMENRLIVSELPETTRDNIEVIVQNSRYQQVNEKEVRYCLVD 241 Query: 57 TAGIAD-------------GKNCSIAKQMNDQTELAINEAHLILFLIDSKA-GITPYDHA 102 T+GI + + QT I + + L L+DS+ +T ++ Sbjct: 242 TSGITEKFWKQENIKTNPSSDQQKFSSYFGSQTIKCIKSSDITLLLLDSREKKLTRSENL 301 Query: 103 ITSFLRKKNIPIIIVSNKMD 122 + + + +IV NK+D Sbjct: 302 LIHLMIEIGSSFLIVFNKLD 321 >gi|122700911|emb|CAL88044.1| GTPase [Helicobacter pylori] Length = 170 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQISDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISAL 158 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + + + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLK----AAQISDLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|163783084|ref|ZP_02178079.1| tRNA modification GTPase TrmE [Hydrogenivirga sp. 128-5-R1-1] gi|159881764|gb|EDP75273.1| tRNA modification GTPase TrmE [Hydrogenivirga sp. 128-5-R1-1] Length = 448 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 40/128 (31%), Positives = 74/128 (57%), Gaps = 5/128 (3%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + +++A+VGRPNVGKS+L N LL +R + G TRD + S N + P+ + D Sbjct: 210 KLLREGIKLAIVGRPNVGKSSLFNALLKEDRAIVTDIEGTTRDYIEESLNLRGIPVRLID 269 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ + +E+ V++SM+ + + + ++DA+ ++D I + + + + Sbjct: 270 TAGIRESE---DPVERIGVERSMEKIEEADVVLFVVDASEELREEDSLIYEKLGD--KDI 324 Query: 318 VLALNKWD 325 V+ NK D Sbjct: 325 VVVFNKID 332 Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 49/157 (31%), Positives = 84/157 (53%), Gaps = 7/157 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKS+LFN L+K+ A+V + G TRD + + G+ ++DTAGI + + Sbjct: 218 LAIVGRPNVGKSSLFNALLKEDRAIVTDIEGTTRDYIEESLNLRGIPVRLIDTAGIRESE 277 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + + +++ I EA ++LF++D+ + D I L K+ I++V NK+D Sbjct: 278 D-PVERIGVERSMEKIEEADVVLFVVDASEELREEDSLIYEKLGDKD--IVVVFNKID-- 332 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 + + I+++SA G +L I K Sbjct: 333 --RGEVVPLEKFQGHSIIKVSALKGYGLKDLEEEILK 367 >gi|37783503|gb|AAP41879.1| GTP-binding protein-like protein [Campylobacter jejuni] Length = 190 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 57/192 (29%), Positives = 99/192 (51%), Gaps = 9/192 (4%) Query: 233 SQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVL 292 S +G T D V+ S +K+ IE DTAG+RK +I + LE+ + ++ + + + +++ Sbjct: 3 SIAGTTIDPVNESIVYKDKVIEFVDTAGIRKRGKI-QGLERFALNRTEKILSHSQIALLV 61 Query: 293 LDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD---MVSDKLNLLQDLRTKAIKNLPQIG 349 LDA F + D RI V V++ LNKWD M DK +++LR K L Sbjct: 62 LDAHEGFNELDERIAGLVAKHYLGVIIVLNKWDKSEMDFDKT--VKELRLDRFKFLAYAP 119 Query: 350 DIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNR 409 I ++ +SG+ L D +L+I + + +I TS LN+ ++ +P P + + + Sbjct: 120 VISVSALSGKRVHVLLD---KILQIFENFTQKIQTSKLNTLIENATRAHPLPHDYGKLVK 176 Query: 410 LKYITQIQSSPP 421 + Y+ Q +PP Sbjct: 177 IYYVVQYDLAPP 188 Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust. Identities = 42/173 (24%), Positives = 71/173 (41%), Gaps = 18/173 (10%) Query: 30 VGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD-GKNCSIAKQMNDQTELAINEAHLILF 88 V + G T D + + + VDTAGI GK + + ++TE ++ + + L Sbjct: 1 VSSIAGTTIDPVNESIVYKDKVIEFVDTAGIRKRGKIQGLERFALNRTEKILSHSQIALL 60 Query: 89 LIDSKAGITPYDHAITSFLRKKNIPIIIVSNK-------MDTRIAQRNFYEIYSLDFKEI 141 ++D+ G D I + K + +IIV NK D + + L + + Sbjct: 61 VLDAHEGFNELDERIAGLVAKHYLGVIIVLNKWDKSEMDFDKTVKELRLDRFKFLAYAPV 120 Query: 142 VEISAEHDLGTSELHSV------IFKIFKQKYPNHPLE-MIENNKRNEESPKE 187 + +SA L +H + IF+ F QK L +IEN R P + Sbjct: 121 ISVSA---LSGKRVHVLLDKILQIFENFTQKIQTSKLNTLIENATRAHPLPHD 170 >gi|224827182|ref|ZP_03700277.1| tRNA modification GTPase TrmE [Lutiella nitroferrum 2002] gi|224600575|gb|EEG06763.1| tRNA modification GTPase TrmE [Lutiella nitroferrum 2002] Length = 450 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 44/118 (37%), Positives = 72/118 (61%), Gaps = 2/118 (1%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + +VG PNVGKS+L N L +A+V + G TRD L + +I+GV +++DTAG+ D Sbjct: 222 VVLVGQPNVGKSSLLNALAGDDVAIVTDIAGTTRDTLREEIVIDGVPVHVIDTAGLRDTD 281 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + + K ++T A+ A L+L L+DS+ G+ AI + L ++ +P + V NK+D Sbjct: 282 DV-VEKIGIERTWQAVQRADLVLVLVDSREGVGAEVSAILAKLPER-LPRVFVFNKVD 337 Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 32/133 (24%), Positives = 72/133 (54%), Gaps = 7/133 (5%) Query: 167 YPNHPLEMIEN-NKRNEESPKENITSEGKSSVKN---ISKPLRIAVVGRPNVGKSTLINR 222 +P+ ++ +E + R + S+ +++ + + + + + +VG+PNVGKS+L+N Sbjct: 179 FPDEEIDFLEAADARGKLGGVRARLSQVQATARQGAILREGMHVVLVGQPNVGKSSLLNA 238 Query: 223 LLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQS 282 L G + + +G TRD++ P+ + DTAG+R + E + ++++ Q+ Sbjct: 239 LAGDDVAIVTDIAGTTRDTLREEIVIDGVPVHVIDTAGLRDTDDVVEKI---GIERTWQA 295 Query: 283 VRTCETTIVLLDA 295 V+ + +VL+D+ Sbjct: 296 VQRADLVLVLVDS 308 >gi|332088078|gb|EGI93203.1| GTP-binding protein Era [Shigella boydii 5216-82] Length = 301 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 51/178 (28%), Positives = 89/178 (50%), Gaps = 6/178 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N+L+ +K+++ TR R+ G VDT G+ + Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN +I + L++F+++ TP D + + LR +P+I+ NK+D Sbjct: 71 KRAINRLMNKAASSSIGDVELVIFVVEGTRW-TPDDEMVLNKLRDGKVPVILAVNKVDNV 129 Query: 125 IAQRNF-----YEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 + + + ++F +IV ISAE L + +++ K + + P + I + Sbjct: 130 QEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPEATHHFPEDYITD 187 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 51/161 (31%), Positives = 82/161 (50%), Gaps = 9/161 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS-VSISWNWKNHPIEIFDTAGMRKP 264 IA+VGRPNVGKSTL+N+LLG +T ++ TR V I I + DT G+ Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYV-DTPGLHME 69 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 + ++ + K + S+ E I +++ T + D +++ + + V+LA+NK Sbjct: 70 EK--RAINRLMNKAASSSIGDVELVIFVVEGT-RWTPDDEMVLNKLRDGKVPVILAVNKV 126 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLD 365 D V +K +LL L+ A Q+ + I IS TG +D Sbjct: 127 DNVQEKADLLPHLQFLA----SQMNFLDIVPISAETGLNVD 163 >gi|122700827|emb|CAL88002.1| GTPase [Helicobacter pylori] Length = 170 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 82/156 (52%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKVAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINHNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISAL 158 Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF H L +NK Sbjct: 70 LLSKEIKALNLKVAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINHNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|84390105|ref|ZP_00991367.1| GTP-binding protein Era [Vibrio splendidus 12B01] gi|86146358|ref|ZP_01064682.1| GTP-binding protein Era [Vibrio sp. MED222] gi|218710568|ref|YP_002418189.1| GTP-binding protein Era [Vibrio splendidus LGP32] gi|84376759|gb|EAP93634.1| GTP-binding protein Era [Vibrio splendidus 12B01] gi|85835837|gb|EAQ53971.1| GTP-binding protein Era [Vibrio sp. MED222] gi|218323587|emb|CAV19827.1| GTP-binding protein era homolog [Vibrio splendidus LGP32] Length = 323 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 48/149 (32%), Positives = 78/149 (52%), Gaps = 6/149 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N ++ +K+++ P TR R+ G VDT G+ + Sbjct: 32 IAIVGRPNVGKSTLLNHILGQKISITSRKPQTTRHRIMGVETEGDYQAIYVDTPGLHIEE 91 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD-- 122 +I + MN ++++ +L+ FL+D T D + + LRK + P+++ NK+D Sbjct: 92 KRAINRLMNRAANSSLSDVNLVFFLVDG-THWTDDDEMVLNKLRKTDFPVVLCINKVDNV 150 Query: 123 ---TRIAQRNFYEIYSLDFKEIVEISAEH 148 T + Q +DF ++V ISA+ Sbjct: 151 QDRTDVMQHMMEVSKKMDFLDVVPISAKQ 179 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 40/133 (30%), Positives = 64/133 (48%), Gaps = 5/133 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMR-KP 264 IA+VGRPNVGKSTL+N +LG +T + TR + ++ DT G+ + Sbjct: 32 IAIVGRPNVGKSTLLNHILGQKISITSRKPQTTRHRIMGVETEGDYQAIYVDTPGLHIEE 91 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 R L + S+ V L+D T + D +++ + T VVL +NK Sbjct: 92 KRAINRLMNRAANSSLSDVNLV---FFLVDGT-HWTDDDEMVLNKLRKTDFPVVLCINKV 147 Query: 325 DMVSDKLNLLQDL 337 D V D+ +++Q + Sbjct: 148 DNVQDRTDVMQHM 160 >gi|242255906|gb|ACS88937.1| GTPase [Helicobacter pylori] gi|242255908|gb|ACS88938.1| GTPase [Helicobacter pylori] Length = 170 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 52/161 (32%), Positives = 83/161 (51%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGIGALIDAIL 163 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 84/172 (48%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D ++S L++N+ Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGIGALIDAILSALDLNQ 170 >gi|23465433|ref|NP_696036.1| GTP-binding protein Era [Bifidobacterium longum NCC2705] gi|46191170|ref|ZP_00120253.2| COG1159: GTPase [Bifidobacterium longum DJO10A] gi|189439456|ref|YP_001954537.1| GTP-binding protein Era [Bifidobacterium longum DJO10A] gi|227545909|ref|ZP_03975958.1| GTP-binding protein Era [Bifidobacterium longum subsp. infantis ATCC 55813] gi|312132864|ref|YP_004000203.1| era [Bifidobacterium longum subsp. longum BBMN68] gi|322688983|ref|YP_004208717.1| GTP-binding protein [Bifidobacterium longum subsp. infantis 157F] gi|322690952|ref|YP_004220522.1| GTP-binding protein [Bifidobacterium longum subsp. longum JCM 1217] gi|23326083|gb|AAN24672.1| widely conserved GTP-binding protein [Bifidobacterium longum NCC2705] gi|189427891|gb|ACD98039.1| GTPase [Bifidobacterium longum DJO10A] gi|227213543|gb|EEI81392.1| GTP-binding protein Era [Bifidobacterium longum subsp. infantis ATCC 55813] gi|311773833|gb|ADQ03321.1| Era [Bifidobacterium longum subsp. longum BBMN68] gi|320455808|dbj|BAJ66430.1| GTP-binding protein [Bifidobacterium longum subsp. longum JCM 1217] gi|320460319|dbj|BAJ70939.1| GTP-binding protein [Bifidobacterium longum subsp. infantis 157F] Length = 354 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 59/204 (28%), Positives = 104/204 (50%), Gaps = 24/204 (11%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTL N L+ K++A+ + P TR + G + +VDT GI + Sbjct: 49 VAVVGRPNVGKSTLINALIGKQIAIASSRPETTRKAIRGILTADHAQLVLVDTPGIHRPR 108 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLR------------KKNI 112 + +++ND + ++ + ++ FL+ + I P D I S LR K I Sbjct: 109 TL-LGQRLNDVVDESLADVDVVAFLLPADQEIGPGDKRILSRLRTDFATKREDGTFKWRI 167 Query: 113 PIIIVSNKMDTRIAQRNFYEIYSL----DFKEIVEISA-EHDLGTSELHSVIFKIFKQKY 167 P+I + K+D Q+ ++ + DF +IV +SA +HD +E+ +V+ + Sbjct: 168 PLIAIVTKIDELGRQQLINKLIEINDFADFSDIVPVSALKHD-NLAEVKNVLI----EHT 222 Query: 168 PNHPLEMIENNKRNEESPKENITS 191 P P +M +++ +EE P++ I Sbjct: 223 PEGP-QMYPDDQISEERPEDTIAE 245 Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 41/78 (52%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +AVVGRPNVGKSTLIN L+G + S+ TR ++ + + + DT G+ +P Sbjct: 49 VAVVGRPNVGKSTLINALIGKQIAIASSRPETTRKAIRGILTADHAQLVLVDTPGIHRPR 108 Query: 266 RITESLEQKTVKKSMQSV 283 + V +S+ V Sbjct: 109 TLLGQRLNDVVDESLADV 126 >gi|99905853|gb|ABF68621.1| YphC [Helicobacter pylori] Length = 170 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 82/156 (52%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKVAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERSYAFSSFGIPKSFNISVSHNRGISAL 158 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKVAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|317452815|emb|CBL87843.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 51/156 (32%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 ++ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --RDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISAL 158 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM + + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMARDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122701629|emb|CAL88204.1| GTPase [Helicobacter pylori] Length = 170 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 51/156 (32%), Positives = 82/156 (52%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKSLNLKVAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISAL 158 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 84/172 (48%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKSLNLKVAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D ++S L++N+ Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLSALDLNQ 170 >gi|122701365|emb|CAL88072.1| GTPase [Helicobacter pylori] Length = 170 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 52/161 (32%), Positives = 83/161 (51%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +N ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNSHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 66/121 (54%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD +H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNSHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|308535355|ref|YP_003933744.1| GTP-binding protein Era [Geobacter bemidjiensis Bem] gi|308052700|gb|ADO00832.1| LOW QUALITY PROTEIN: GTP-binding protein Era [Geobacter bemidjiensis Bem] Length = 297 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 51/165 (30%), Positives = 83/165 (50%), Gaps = 5/165 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 ++IVG PNVGKSTL NR++ +K+ + + P TR+R+ G + G +DT GI K Sbjct: 11 VSIVGRPNVGKSTLLNRILGEKLMITSDKPQTTRNRIKGIHNVPGGQIVFIDTPGIHRAK 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD-- 122 + + K M D+ ++ LILFL+D I L + P+I+V NK+D Sbjct: 71 S-RLNKFMVDEALSSVQGVDLILFLVDGAVDPEKEAGMIKEVLSGVDAPVILVMNKIDLV 129 Query: 123 --TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQ 165 + +R + FKEI+ +SA G +L ++ + + Sbjct: 130 PKGELLERMSCYGDTYPFKEIIPVSAGTGDGVEQLVQLVHGLLPE 174 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 48/167 (28%), Positives = 84/167 (50%), Gaps = 16/167 (9%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +++VGRPNVGKSTL+NR+LG ++T + TR+ + N I DT G+ Sbjct: 11 VSIVGRPNVGKSTLLNRILGEKLMITSDKPQTTRNRIKGIHNVPGGQIVFIDTPGIH--- 67 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 R L + V +++ SV+ + + L+D + EK+ I + + V+L +NK D Sbjct: 68 RAKSRLNKFMVDEALSSVQGVDLILFLVDGAVDPEKEAGMIKEVLSGVDAPVILVMNKID 127 Query: 326 MVSDKLNLLQDLRTKAIKNLPQIGDIY----INTISGRTGEGLDDLM 368 +V + + ++ + GD Y I +S TG+G++ L+ Sbjct: 128 LVP---------KGELLERMSCYGDTYPFKEIIPVSAGTGDGVEQLV 165 >gi|291516984|emb|CBK70600.1| GTP-binding protein Era [Bifidobacterium longum subsp. longum F8] Length = 354 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 61/204 (29%), Positives = 103/204 (50%), Gaps = 24/204 (11%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTL N L+ K++A+ + P TR + G + +VDT GI + Sbjct: 49 VAVVGRPNVGKSTLINALIGKQIAIASSRPETTRKAVRGILTADHAQLVLVDTPGIHRPR 108 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLR------------KKNI 112 + +++ND + ++ + ++ FL+ + I P D I S LR K I Sbjct: 109 TL-LGQRLNDVVDESLADVDVVAFLLPADQEIGPGDKRILSRLRTDFATKREDGTFKWRI 167 Query: 113 PIIIVSNKMDTRIAQR---NFYEIYSL-DFKEIVEISA-EHDLGTSELHSVIFKIFKQKY 167 P+I + K+D Q+ EI DF +IV +SA +HD +E+ +V+ + Sbjct: 168 PLIAIVTKIDELGRQQLINKLIEINDFADFSDIVPVSALKHD-NLAEVKNVLI----EHT 222 Query: 168 PNHPLEMIENNKRNEESPKENITS 191 P P +M +++ +EE P++ I Sbjct: 223 PEGP-QMYPDDQISEERPEDTIAE 245 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 41/78 (52%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +AVVGRPNVGKSTLIN L+G + S+ TR +V + + + DT G+ +P Sbjct: 49 VAVVGRPNVGKSTLINALIGKQIAIASSRPETTRKAVRGILTADHAQLVLVDTPGIHRPR 108 Query: 266 RITESLEQKTVKKSMQSV 283 + V +S+ V Sbjct: 109 TLLGQRLNDVVDESLADV 126 >gi|325678533|ref|ZP_08158144.1| tRNA modification GTPase TrmE [Ruminococcus albus 8] gi|324109752|gb|EGC03957.1| tRNA modification GTPase TrmE [Ruminococcus albus 8] Length = 455 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 60/214 (28%), Positives = 100/214 (46%), Gaps = 11/214 (5%) Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFK-QKYPNHPLEMIENNK 179 MDT IA + Y + S + + D T EL ++ ++ YP L +E N Sbjct: 132 MDT-IAAQGEYALASANLTRKGSLFGRIDKVTKELVKLLGELAAWVDYPEEDLPAVEENA 190 Query: 180 RNEESPKENITSEGKSSVKN-----ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQ 234 E S K ++ G+ + I + + GRPNVGKSTL+N LLGY+R + Sbjct: 191 LRE-SLKNAVSVTGRLLADSDNGMLIKNGIDTVIAGRPNVGKSTLMNLLLGYDRSIVTEV 249 Query: 235 SGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLD 294 +G TRD + S + DTAG+R + +E+ V+ + + + C I + D Sbjct: 250 AGTTRDVIEESARLGELIFRLSDTAGIRDTE---DKVEKIGVEMAQKRLEECMLVIEVFD 306 Query: 295 ATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVS 328 ++ + D +++ V + G ++ LNK D+ S Sbjct: 307 TSVKPDDDDTALLEKVRSLGKRALIVLNKSDLES 340 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/158 (31%), Positives = 76/158 (48%), Gaps = 5/158 (3%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 I G PNVGKSTL N L+ ++V G TRD + A + +IF + DTAGI D ++ Sbjct: 223 IAGRPNVGKSTLMNLLLGYDRSIVTEVAGTTRDVIEESARLGELIFRLSDTAGIRDTED- 281 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 + K + + + E L++ + D+ D A+ +R +IV NK D A Sbjct: 282 KVEKIGVEMAQKRLEECMLVIEVFDTSVKPDDDDTALLEKVRSLGKRALIVLNKSDLESA 341 Query: 127 -QRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 +F+ Y + IV ISA+ ++ + KIF Sbjct: 342 VGEDFFREYC---ENIVCISAKDPNDREKIQHALEKIF 376 >gi|224437875|ref|ZP_03658822.1| tRNA modification GTPase TrmE [Helicobacter cinaedi CCUG 18818] gi|313144324|ref|ZP_07806517.1| tRNA modification GTPase TrmE [Helicobacter cinaedi CCUG 18818] gi|313129355|gb|EFR46972.1| tRNA modification GTPase TrmE [Helicobacter cinaedi CCUG 18818] Length = 465 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 40/122 (32%), Positives = 73/122 (59%), Gaps = 4/122 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +++VG+PNVGKS+L+N LL Y R + G TRD++ S + + I DTAG+R+ Sbjct: 225 LSIVGKPNVGKSSLLNALLMYERAIVSDVEGTTRDTIEESLQIEGVIVRIVDTAGIRQSP 284 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVF-NTGHAVVLALNKW 324 +++EQ + K+ +++ + I L D++ F+++D I+D + +T ++L L K Sbjct: 285 ---DAIEQIGIAKTKEALDRSDVIIALFDSSRAFDEKDREILDLLATHTDKHILLVLTKS 341 Query: 325 DM 326 D+ Sbjct: 342 DL 343 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 46/125 (36%), Positives = 68/125 (54%), Gaps = 2/125 (1%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 YT++IVG PNVGKS+L N L+ + A+V + G TRD + I GVI IVDTAGI Sbjct: 223 YTLSIVGKPNVGKSSLLNALLMYERAIVSDVEGTTRDTIEESLQIEGVIVRIVDTAGIRQ 282 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLR-KKNIPIIIVSNKM 121 + +I + +T+ A++ + +I+ L DS D I L + I++V K Sbjct: 283 SPD-AIEQIGIAKTKEALDRSDVIIALFDSSRAFDEKDREILDLLATHTDKHILLVLTKS 341 Query: 122 DTRIA 126 D +A Sbjct: 342 DLPLA 346 >gi|302880137|ref|YP_003848701.1| tRNA modification GTPase TrmE [Gallionella capsiferriformans ES-2] gi|302582926|gb|ADL56937.1| tRNA modification GTPase TrmE [Gallionella capsiferriformans ES-2] Length = 442 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 60/162 (37%), Positives = 83/162 (51%), Gaps = 20/162 (12%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG- 63 IA+VG PNVGKS+L NRL +++A+V + PG TRD + I GV +I+DTAG+ + Sbjct: 219 IALVGRPNVGKSSLLNRLAGEEVALVSDVPGTTRDVIRQAIQIRGVPLHIMDTAGLRESG 278 Query: 64 ---KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 +N +A+ T + A LIL L+D+ G + D AI + IP + V NK Sbjct: 279 DEVENMGMAR-----THQTVGRADLILMLLDAAQGCSEGDLAIIAGF-PVEIPRLQVYNK 332 Query: 121 MD-TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 D + A N IY ISA+ LG L I K Sbjct: 333 ADLLQGALSNDAGIY---------ISAKSGLGIDTLREQILK 365 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 77/147 (52%), Gaps = 11/147 (7%) Query: 167 YPNHPLEMIENNKRNEESPK------ENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLI 220 +P +E+++ + R+ K + + + + S+ + + IA+VGRPNVGKS+L+ Sbjct: 176 FPEEDIEVVDTSHRDRLLEKIKTKLAQTLATAKQGSL--LREGAHIALVGRPNVGKSSLL 233 Query: 221 NRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSM 280 NRL G L G TRD + + + P+ I DTAG+R+ + +E + ++ Sbjct: 234 NRLAGEEVALVSDVPGTTRDVIRQAIQIRGVPLHIMDTAGLRESG---DEVENMGMARTH 290 Query: 281 QSVRTCETTIVLLDATIPFEKQDLRIV 307 Q+V + ++LLDA + DL I+ Sbjct: 291 QTVGRADLILMLLDAAQGCSEGDLAII 317 >gi|326794406|ref|YP_004312226.1| GTP-binding protein Era-like-protein [Marinomonas mediterranea MMB-1] gi|326545170|gb|ADZ90390.1| GTP-binding protein Era-like-protein [Marinomonas mediterranea MMB-1] Length = 339 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 49/178 (27%), Positives = 90/178 (50%), Gaps = 6/178 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N ++ +K+++ P TRD++ G + VDT G+ G+ Sbjct: 51 VAIVGRPNVGKSTLMNHILGQKLSITSRKPQTTRDQILGVKTEGSIQTIYVDTPGLHLGQ 110 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN A+ + ++LF+ID++ T D ++ ++ P+++V NK+D Sbjct: 111 QKAINRFMNKTATAALKDVDVVLFVIDAERW-TDEDESVLQKVQYAQCPVVLVVNKVDNL 169 Query: 125 IAQRNFYEIYS-----LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 + + ++F +IV ISA + L +++ + +P + I N Sbjct: 170 DEKDELLPKLAALSEKMEFAQIVPISALRNKNLDRLENLVESYIPEGTQYYPEDQITN 227 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 41/166 (24%), Positives = 83/166 (50%), Gaps = 8/166 (4%) Query: 173 EMIENNKRNEESPKENITSEG---KSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRL 229 ++++++ E + E ++ E + + I+ +A+VGRPNVGKSTL+N +LG Sbjct: 15 DLVQDSAAQEHAEYEGVSGENSGQEEDYQEITHCGFVAIVGRPNVGKSTLMNHILGQKLS 74 Query: 230 LTGSQSGITRDSV-SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCET 288 +T + TRD + + I + DT G+ + +++ + K + +++ + Sbjct: 75 ITSRKPQTTRDQILGVKTEGSIQTIYV-DTPGLHLGQQ--KAINRFMNKTATAALKDVDV 131 Query: 289 TIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLL 334 + ++DA + +D ++ V VVL +NK D + +K LL Sbjct: 132 VLFVIDAE-RWTDEDESVLQKVQYAQCPVVLVVNKVDNLDEKDELL 176 >gi|253699692|ref|YP_003020881.1| GTP-binding protein Era [Geobacter sp. M21] gi|259645946|sp|C6E2H7|ERA_GEOSM RecName: Full=GTPase Era gi|251774542|gb|ACT17123.1| GTP-binding protein Era [Geobacter sp. M21] Length = 297 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 51/165 (30%), Positives = 83/165 (50%), Gaps = 5/165 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 ++IVG PNVGKSTL NR++ +K+ + + P TR+R+ G + G +DT GI K Sbjct: 11 VSIVGRPNVGKSTLLNRILGEKLMITSDKPQTTRNRIKGIHNVPGGQIVFIDTPGIHRAK 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD-- 122 + + K M D+ ++ LILFL+D I L + P+I+V NK+D Sbjct: 71 S-RLNKFMVDEALSSVQGVDLILFLVDGAVDPEKEAGMIKEVLSGVDAPVILVMNKIDLV 129 Query: 123 --TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQ 165 + +R + FKEI+ +SA G +L ++ + + Sbjct: 130 PKGELLERMSCYGDTYPFKEIIPVSAGTGDGVEQLVQLVHGLLPE 174 Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 48/167 (28%), Positives = 84/167 (50%), Gaps = 16/167 (9%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +++VGRPNVGKSTL+NR+LG ++T + TR+ + N I DT G+ Sbjct: 11 VSIVGRPNVGKSTLLNRILGEKLMITSDKPQTTRNRIKGIHNVPGGQIVFIDTPGIH--- 67 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 R L + V +++ SV+ + + L+D + EK+ I + + V+L +NK D Sbjct: 68 RAKSRLNKFMVDEALSSVQGVDLILFLVDGAVDPEKEAGMIKEVLSGVDAPVILVMNKID 127 Query: 326 MVSDKLNLLQDLRTKAIKNLPQIGDIY----INTISGRTGEGLDDLM 368 +V + + ++ + GD Y I +S TG+G++ L+ Sbjct: 128 LVP---------KGELLERMSCYGDTYPFKEIIPVSAGTGDGVEQLV 165 >gi|122702669|emb|CAL88524.1| GTPase [Helicobacter pylori] Length = 170 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 52/161 (32%), Positives = 83/161 (51%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRSISTLIDAIL 163 Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 85/172 (49%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R+ L D ++S L +N+ Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRSISTLIDAILSALNLNQ 170 >gi|206900693|ref|YP_002251652.1| tRNA modification GTPase TrmE [Dictyoglomus thermophilum H-6-12] gi|206739796|gb|ACI18854.1| tRNA modification GTPase TrmE [Dictyoglomus thermophilum H-6-12] Length = 455 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 64/211 (30%), Positives = 113/211 (53%), Gaps = 17/211 (8%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAII-NGVIFNIVDTAGIA 61 Y + +VG PNVGKS+LFN L+++ A+V PG TRD + G+ + +G + I DTAG+ Sbjct: 219 YGVILVGRPNVGKSSLFNALMREDRAIVTPIPGTTRDYIEGELYLSSGHLVKIYDTAGLG 278 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYD----HAITSFLRKKNIPIIIV 117 K+ + K ++TE + +++LILF++D + + I S+ KK +I+V Sbjct: 279 IPKDI-LDKMGMERTEKILEKSNLILFVVDGSCEASEEEINLLEKIKSYQNKK---LILV 334 Query: 118 SNKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 NK+D + Q+ ++ D ++I +SA+ G E+ VI + + + + Sbjct: 335 VNKID--LPQKVDLSVFPKDIEKIF-VSAKERKGIEEIEKVIERHITSQDVEDGIFL--- 388 Query: 178 NKRNEESPKE--NITSEGKSSVKNISKPLRI 206 N + E KE N+ EG + +KN+ + L + Sbjct: 389 NMYHREKLKEVYNLCEEGLNVLKNLPQSLDV 419 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 37/151 (24%), Positives = 80/151 (52%), Gaps = 7/151 (4%) Query: 180 RNEESPKENITSEGKSSVKN--ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGI 237 RN E K+ ++ + + K I + + +VGRPNVGKS+L N L+ +R + G Sbjct: 193 RNIEEIKKEVSDLLEKAEKGDWIREGYGVILVGRPNVGKSSLFNALMREDRAIVTPIPGT 252 Query: 238 TRDSVSIS-WNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDAT 296 TRD + + H ++I+DTAG+ P I L++ ++++ + + + ++D + Sbjct: 253 TRDYIEGELYLSSGHLVKIYDTAGLGIPKDI---LDKMGMERTEKILEKSNLILFVVDGS 309 Query: 297 IPFEKQDLRIVDSVFN-TGHAVVLALNKWDM 326 ++++ +++ + + ++L +NK D+ Sbjct: 310 CEASEEEINLLEKIKSYQNKKLILVVNKIDL 340 >gi|4467669|emb|CAB37786.1| GTP-binding protein homologue [Helicobacter pylori] Length = 170 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKAFNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGAPKSFNISVSHNRGISAL 158 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKAFNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|15832686|ref|NP_311459.1| GTP-binding protein Era [Escherichia coli O157:H7 str. Sakai] gi|168748364|ref|ZP_02773386.1| GTP-binding protein Era [Escherichia coli O157:H7 str. EC4113] gi|168757773|ref|ZP_02782780.1| GTP-binding protein Era [Escherichia coli O157:H7 str. EC4401] gi|168761187|ref|ZP_02786194.1| GTP-binding protein Era [Escherichia coli O157:H7 str. EC4501] gi|168768670|ref|ZP_02793677.1| GTP-binding protein Era [Escherichia coli O157:H7 str. EC4486] gi|168773508|ref|ZP_02798515.1| GTP-binding protein Era [Escherichia coli O157:H7 str. EC4196] gi|168778543|ref|ZP_02803550.1| GTP-binding protein Era [Escherichia coli O157:H7 str. EC4076] gi|168787926|ref|ZP_02812933.1| GTP-binding protein Era [Escherichia coli O157:H7 str. EC869] gi|168798948|ref|ZP_02823955.1| GTP-binding protein Era [Escherichia coli O157:H7 str. EC508] gi|195936713|ref|ZP_03082095.1| GTP-binding protein Era [Escherichia coli O157:H7 str. EC4024] gi|208807726|ref|ZP_03250063.1| GTP-binding protein Era [Escherichia coli O157:H7 str. EC4206] gi|208812920|ref|ZP_03254249.1| GTP-binding protein Era [Escherichia coli O157:H7 str. EC4045] gi|208818911|ref|ZP_03259231.1| GTP-binding protein Era [Escherichia coli O157:H7 str. EC4042] gi|209400046|ref|YP_002272041.1| GTP-binding protein Era [Escherichia coli O157:H7 str. EC4115] gi|217326912|ref|ZP_03442995.1| GTP-binding protein Era [Escherichia coli O157:H7 str. TW14588] gi|254794516|ref|YP_003079353.1| GTP-binding protein Era [Escherichia coli O157:H7 str. TW14359] gi|261222998|ref|ZP_05937279.1| membrane-associated, 16S rRNA-binding GTPase [Escherichia coli O157:H7 str. FRIK2000] gi|261259451|ref|ZP_05951984.1| membrane-associated, 16S rRNA-binding GTPase [Escherichia coli O157:H7 str. FRIK966] gi|291283841|ref|YP_003500659.1| GTP-binding protein era [Escherichia coli O55:H7 str. CB9615] gi|13959352|sp|P58070|ERA_ECO57 RecName: Full=GTPase Era gi|226741207|sp|B5Z140|ERA_ECO5E RecName: Full=GTPase Era gi|13362903|dbj|BAB36855.1| GTP-binding protein [Escherichia coli O157:H7 str. Sakai] gi|187770556|gb|EDU34400.1| GTP-binding protein Era [Escherichia coli O157:H7 str. EC4196] gi|188017077|gb|EDU55199.1| GTP-binding protein Era [Escherichia coli O157:H7 str. EC4113] gi|189003180|gb|EDU72166.1| GTP-binding protein Era [Escherichia coli O157:H7 str. EC4076] gi|189355284|gb|EDU73703.1| GTP-binding protein Era [Escherichia coli O157:H7 str. EC4401] gi|189362313|gb|EDU80732.1| GTP-binding protein Era [Escherichia coli O157:H7 str. EC4486] gi|189368417|gb|EDU86833.1| GTP-binding protein Era [Escherichia coli O157:H7 str. EC4501] gi|189372292|gb|EDU90708.1| GTP-binding protein Era [Escherichia coli O157:H7 str. EC869] gi|189378591|gb|EDU97007.1| GTP-binding protein Era [Escherichia coli O157:H7 str. EC508] gi|208727527|gb|EDZ77128.1| GTP-binding protein Era [Escherichia coli O157:H7 str. EC4206] gi|208734197|gb|EDZ82884.1| GTP-binding protein Era [Escherichia coli O157:H7 str. EC4045] gi|208739034|gb|EDZ86716.1| GTP-binding protein Era [Escherichia coli O157:H7 str. EC4042] gi|209161446|gb|ACI38879.1| GTP-binding protein Era [Escherichia coli O157:H7 str. EC4115] gi|209762888|gb|ACI79756.1| GTP-binding protein [Escherichia coli] gi|209762890|gb|ACI79757.1| GTP-binding protein [Escherichia coli] gi|209762892|gb|ACI79758.1| GTP-binding protein [Escherichia coli] gi|209762894|gb|ACI79759.1| GTP-binding protein [Escherichia coli] gi|209762896|gb|ACI79760.1| GTP-binding protein [Escherichia coli] gi|217319279|gb|EEC27704.1| GTP-binding protein Era [Escherichia coli O157:H7 str. TW14588] gi|254593916|gb|ACT73277.1| membrane-associated, 16S rRNA-binding GTPase [Escherichia coli O157:H7 str. TW14359] gi|290763714|gb|ADD57675.1| GTP-binding protein era [Escherichia coli O55:H7 str. CB9615] gi|320188907|gb|EFW63566.1| GTP-binding protein Era [Escherichia coli O157:H7 str. EC1212] gi|320640815|gb|EFX10309.1| GTPase Era [Escherichia coli O157:H7 str. G5101] gi|320646161|gb|EFX15101.1| GTPase Era [Escherichia coli O157:H- str. 493-89] gi|320651456|gb|EFX19852.1| GTPase Era [Escherichia coli O157:H- str. H 2687] gi|320657057|gb|EFX24876.1| GTPase Era [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320662722|gb|EFX30061.1| GTPase Era [Escherichia coli O55:H7 str. USDA 5905] gi|320667542|gb|EFX34462.1| GTPase Era [Escherichia coli O157:H7 str. LSU-61] gi|326340372|gb|EGD64176.1| GTP-binding protein Era [Escherichia coli O157:H7 str. 1125] gi|326345055|gb|EGD68799.1| GTP-binding protein Era [Escherichia coli O157:H7 str. 1044] Length = 301 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 51/178 (28%), Positives = 90/178 (50%), Gaps = 6/178 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N+L+ +K+++ TR R+ G VDT G+ + Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN +I + L++F+++ TP D + + LR+ P+I+ NK+D Sbjct: 71 KRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNV 129 Query: 125 IAQRNF-----YEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 + + + ++F +IV ISAE L + + +++ K + + P + I + Sbjct: 130 QEKADLLPHLQFLASQMNFLDIVPISAETGLNVATIAAIVRKHLPEATHHFPEDYITD 187 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/157 (31%), Positives = 79/157 (50%), Gaps = 9/157 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS-VSISWNWKNHPIEIFDTAGMRKP 264 IA+VGRPNVGKSTL+N+LLG +T ++ TR V I I + DT G+ Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYV-DTPGLHME 69 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 + ++ + K + S+ E I +++ T + D +++ + V+LA+NK Sbjct: 70 EK--RAINRLMNKAASSSIGDVELVIFVVEGT-RWTPDDEMVLNKLREGKAPVILAVNKV 126 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTG 361 D V +K +LL L+ A Q+ + I IS TG Sbjct: 127 DNVQEKADLLPHLQFLA----SQMNFLDIVPISAETG 159 >gi|110802047|ref|YP_699296.1| GTP-binding protein Era [Clostridium perfringens SM101] gi|168204746|ref|ZP_02630751.1| GTP-binding protein Era [Clostridium perfringens E str. JGS1987] gi|168208717|ref|ZP_02634342.1| GTP-binding protein Era [Clostridium perfringens B str. ATCC 3626] gi|168212948|ref|ZP_02638573.1| GTP-binding protein Era [Clostridium perfringens CPE str. F4969] gi|168215642|ref|ZP_02641267.1| GTP-binding protein Era [Clostridium perfringens NCTC 8239] gi|169343587|ref|ZP_02864586.1| GTP-binding protein Era [Clostridium perfringens C str. JGS1495] gi|182624448|ref|ZP_02952232.1| GTP-binding protein Era [Clostridium perfringens D str. JGS1721] gi|122956577|sp|Q0SRG1|ERA_CLOPS RecName: Full=GTPase Era gi|110682548|gb|ABG85918.1| GTP-binding protein Era [Clostridium perfringens SM101] gi|169298147|gb|EDS80237.1| GTP-binding protein Era [Clostridium perfringens C str. JGS1495] gi|170663559|gb|EDT16242.1| GTP-binding protein Era [Clostridium perfringens E str. JGS1987] gi|170713142|gb|EDT25324.1| GTP-binding protein Era [Clostridium perfringens B str. ATCC 3626] gi|170715652|gb|EDT27834.1| GTP-binding protein Era [Clostridium perfringens CPE str. F4969] gi|177910451|gb|EDT72828.1| GTP-binding protein Era [Clostridium perfringens D str. JGS1721] gi|182382082|gb|EDT79561.1| GTP-binding protein Era [Clostridium perfringens NCTC 8239] Length = 296 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 58/177 (32%), Positives = 93/177 (52%), Gaps = 9/177 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNI--VDTAGIAD 62 I IVG PNVGKSTL N L+ +K+++V N P TR+ + Q I+ G + + VDT GI Sbjct: 7 ITIVGRPNVGKSTLTNLLMGEKLSIVSNKPQTTRNNI--QTILTGDDYQMIFVDTPGIHK 64 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 K+ + + M + +I + L+LFL + + D I L+ + P+I V NK+D Sbjct: 65 PKH-KLGEYMVNSATDSIKDVDLVLFLSNPCEEVGRGDKFIIEQLKNQKAPVIFVLNKVD 123 Query: 123 TRIAQR--NFYEIYS--LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 ++ E++S DF E++ ISA T +L ++ K + +P +MI Sbjct: 124 ESSPEKVAKTLELFSKEYDFAEMIPISAMKAKNTDKLLELMVKYLPEGPKYYPDDMI 180 Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 59/123 (47%), Gaps = 3/123 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 I +VGRPNVGKSTL N L+G + ++ TR+++ ++ + DT G+ KP Sbjct: 7 ITIVGRPNVGKSTLTNLLMGEKLSIVSNKPQTTRNNIQTILTGDDYQMIFVDTPGIHKPK 66 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + V + S++ + + L + + D I++ + N V+ LNK D Sbjct: 67 H---KLGEYMVNSATDSIKDVDLVLFLSNPCEEVGRGDKFIIEQLKNQKAPVIFVLNKVD 123 Query: 326 MVS 328 S Sbjct: 124 ESS 126 >gi|4467671|emb|CAB37787.1| GTP-binding protein homologue [Helicobacter pylori] Length = 170 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TR+ + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRNINNRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISAL 158 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TR+ + H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRNINNRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|122702515|emb|CAL88448.1| GTPase [Helicobacter pylori] Length = 170 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKKIKAINLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGAPKSFNISVSHNRGISALIDAIL 163 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 83/172 (48%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKKIKAINLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D ++S L +N+ Sbjct: 125 D--NDK----EKERAYAFSSFGAPKSFNISVSHNRGISALIDAILSALNLNQ 170 >gi|122702189|emb|CAL88285.1| GTPase [Helicobacter pylori] Length = 170 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 52/161 (32%), Positives = 83/161 (51%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKVAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 49/171 (28%), Positives = 83/171 (48%), Gaps = 12/171 (7%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKVAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEIN 375 D +DK + R A + I+ R L D ++S L++N Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSALDLN 169 >gi|122701381|emb|CAL88080.1| GTPase [Helicobacter pylori] Length = 170 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 52/161 (32%), Positives = 83/161 (51%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKVAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 83/172 (48%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKVAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D ++S L +N+ Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSALNLNQ 170 >gi|257461373|ref|ZP_05626469.1| tRNA modification GTPase TrmE [Campylobacter gracilis RM3268] gi|257441096|gb|EEV16243.1| tRNA modification GTPase TrmE [Campylobacter gracilis RM3268] Length = 582 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 45/163 (27%), Positives = 89/163 (54%), Gaps = 12/163 (7%) Query: 171 PLEMIENNKRNEESPKENITSEGK-----SSVKNISKPLRIAVVGRPNVGKSTLINRLLG 225 P ++++N+ +E +NI S K S + + + ++A+VG+PNVGKS+++N +L Sbjct: 180 PSDVLQNS---QEMLSQNIASLEKITRISRSRRGLIEGFKVAIVGKPNVGKSSILNSMLS 236 Query: 226 YNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRT 285 ++R + ++G TRD + S H I I DTAG+R ES+ + S+++ Sbjct: 237 FSRAIVSDEAGTTRDLIEESLQIGTHLIRIVDTAGIRHSGSKLESI---GISYSLRAASE 293 Query: 286 CETTIVLLDATIPFEKQDLRIVDSVFNT-GHAVVLALNKWDMV 327 + + + DA+ ++ +D +I+ + G ++ LNK D++ Sbjct: 294 ADVILAVFDASREWDAEDAQILKILREQKGKKIIYVLNKCDLL 336 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 45/123 (36%), Positives = 63/123 (51%), Gaps = 6/123 (4%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI-- 60 + +AIVG PNVGKS++ N ++ A+V + G TRD + I + IVDTAGI Sbjct: 215 FKVAIVGKPNVGKSSILNSMLSFSRAIVSDEAGTTRDLIEESLQIGTHLIRIVDTAGIRH 274 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLR-KKNIPIIIVSN 119 + K SI + + A +EA +IL + D+ D I LR +K II V N Sbjct: 275 SGSKLESIGISYSLR---AASEADVILAVFDASREWDAEDAQILKILREQKGKKIIYVLN 331 Query: 120 KMD 122 K D Sbjct: 332 KCD 334 >gi|150392473|ref|YP_001322522.1| tRNA modification GTPase TrmE [Alkaliphilus metalliredigens QYMF] gi|166988167|sp|A6TXE5|MNME_ALKMQ RecName: Full=tRNA modification GTPase mnmE gi|149952335|gb|ABR50863.1| tRNA modification GTPase TrmE [Alkaliphilus metalliredigens QYMF] Length = 461 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 48/141 (34%), Positives = 77/141 (54%), Gaps = 12/141 (8%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PNVGKS+L N L+K+ A+V PG TRD + I G+ N++DTAGI + ++ Sbjct: 228 IVGKPNVGKSSLLNALLKESRAIVTEVPGTTRDAIEEHFNIRGIPLNLIDTAGIRETEDI 287 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 + K ++++ N+A LI+ ++D+ +TP D I ++ K I++ NK D Sbjct: 288 -VEKIGVERSKAFFNKADLIILMLDASRELTPEDLQIMELVKSKKALILV--NKTDL--- 341 Query: 127 QRNFYEIYSLDFKEIVEISAE 147 +D+ I+EI E Sbjct: 342 ------TSQIDYDRIIEIVGE 356 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 45/137 (32%), Positives = 78/137 (56%), Gaps = 5/137 (3%) Query: 192 EGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNH 251 E + K + + L +VG+PNVGKS+L+N LL +R + G TRD++ +N + Sbjct: 212 ETADTGKILREGLNTVIVGKPNVGKSSLLNALLKESRAIVTEVPGTTRDAIEEHFNIRGI 271 Query: 252 PIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVF 311 P+ + DTAG+R+ I E + V++S + I++LDA+ +DL+I++ V Sbjct: 272 PLNLIDTAGIRETEDIVEKI---GVERSKAFFNKADLIILMLDASRELTPEDLQIMELV- 327 Query: 312 NTGHAVVLALNKWDMVS 328 + A++L +NK D+ S Sbjct: 328 KSKKALIL-VNKTDLTS 343 >gi|332140433|ref|YP_004426171.1| GTP-binding protein Era [Alteromonas macleodii str. 'Deep ecotype'] gi|332141898|ref|YP_004427636.1| GTP-binding protein Era [Alteromonas macleodii str. 'Deep ecotype'] gi|327550455|gb|AEA97173.1| GTP-binding protein Era [Alteromonas macleodii str. 'Deep ecotype'] gi|327551920|gb|AEA98638.1| GTP-binding protein Era [Alteromonas macleodii str. 'Deep ecotype'] Length = 303 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 49/149 (32%), Positives = 77/149 (51%), Gaps = 6/149 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL NRL+ +K+++ P TR R+ G VDT G+ + Sbjct: 11 VAIVGRPNVGKSTLLNRLLGQKVSITSRKPQTTRHRILGIDTDGDYQAIYVDTPGLHQDE 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN ++ E L+LF+++ D + S +++ N+P ++ NKMD Sbjct: 71 KRAINRYMNRAASSSLAEVGLVLFVVEGDR-FNAEDEMVLSKVKQANLPCYLIVNKMDKV 129 Query: 125 IAQRNFY-EIYSLD----FKEIVEISAEH 148 + NF + L F+ IV ISA+ Sbjct: 130 EDKENFMVHLQKLGEKHPFEHIVPISAKQ 158 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 79/172 (45%), Gaps = 14/172 (8%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV-SISWNWKNHPIEIFDTAGMRKP 264 +A+VGRPNVGKSTL+NRLLG +T + TR + I + I + DT G+ + Sbjct: 11 VAIVGRPNVGKSTLLNRLLGQKVSITSRKPQTTRHRILGIDTDGDYQAIYV-DTPGLHQD 69 Query: 265 SRITESLEQKTVKKSMQ---SVRTCETTIVLLDATIP-FEKQDLRIVDSVFNTGHAVVLA 320 E++ + + M S E +VL F +D ++ V L Sbjct: 70 -------EKRAINRYMNRAASSSLAEVGLVLFVVEGDRFNAEDEMVLSKVKQANLPCYLI 122 Query: 321 LNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVL 372 +NK D V DK N + L+ K+ P + I+ G+ +G+ +L+ L Sbjct: 123 VNKMDKVEDKENFMVHLQKLGEKH-PFEHIVPISAKQGKMVDGIRELVAESL 173 >gi|122701349|emb|CAL88064.1| GTPase [Helicobacter pylori] Length = 170 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 52/161 (32%), Positives = 83/161 (51%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKVAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERSYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKVAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|292806424|gb|ADE42342.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 82/156 (52%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+ Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMV 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISAL 158 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMVKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|209695942|ref|YP_002263872.1| GTP-binding protein Era [Aliivibrio salmonicida LFI1238] gi|208009895|emb|CAQ80208.1| GTP-binding protein era [Aliivibrio salmonicida LFI1238] Length = 321 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 48/149 (32%), Positives = 81/149 (54%), Gaps = 8/149 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N+++ +K+++ P TR R+ G +DT G+ + Sbjct: 30 IAIVGRPNVGKSTLLNQILGQKISITSRKPQTTRHRIMGVDTEGDYQAIYIDTPGLHIEE 89 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN ++++ +L+LFL+D TP D + + LRK P +++ NK+D Sbjct: 90 KRAINRLMNRAASSSLSDVNLVLFLVDG-THWTPDDEMVLNKLRKAGFPTVLLVNKVDN- 147 Query: 125 IAQRNFYEIY------SLDFKEIVEISAE 147 + +N + +DF ++V ISA+ Sbjct: 148 VKDKNDVMAHLQTMTEKMDFVDVVPISAK 176 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 49/178 (27%), Positives = 83/178 (46%), Gaps = 9/178 (5%) Query: 189 ITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNW 248 +SE K+ + IA+VGRPNVGKSTL+N++LG +T + TR + Sbjct: 13 FSSEAKTESSDNQHCGFIAIVGRPNVGKSTLLNQILGQKISITSRKPQTTRHRIMGVDTE 72 Query: 249 KNHPIEIFDTAGMR-KPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIV 307 ++ DT G+ + R L + S+ V + L+D T + D ++ Sbjct: 73 GDYQAIYIDTPGLHIEEKRAINRLMNRAASSSLSDVNLV---LFLVDGT-HWTPDDEMVL 128 Query: 308 DSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLD 365 + + G VL +NK D V DK +++ L+T K + + + IS ++G +D Sbjct: 129 NKLRKAGFPTVLLVNKVDNVKDKNDVMAHLQTMTEK----MDFVDVVPISAKSGSNVD 182 >gi|325694429|gb|EGD36338.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis SK150] Length = 457 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 46/137 (33%), Positives = 83/137 (60%), Gaps = 7/137 (5%) Query: 207 AVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSR 266 A++GRPNVGKS+L+N LL ++ + G TRD + N K P+++ DTAG+R+ Sbjct: 227 AIIGRPNVGKSSLLNNLLCEDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDD 286 Query: 267 ITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 + +EQ V++S ++++ + +++L+A+ P QD ++++ + G ++ LNK D+ Sbjct: 287 L---VEQIGVERSKKALQEADLVLLVLNASEPLTDQDRQLLE--ISKGSNRIVLLNKTDL 341 Query: 327 VSDKLNLLQDLRTKAIK 343 +K+ L Q L AIK Sbjct: 342 -EEKIELDQ-LPADAIK 356 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 68/118 (57%), Gaps = 5/118 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+ + A+V + G TRD + I GV ++DTAGI + + Sbjct: 227 AIIGRPNVGKSSLLNNLLCEDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDD 286 Query: 66 CSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + +Q+ ++++ A+ EA L+L ++++ +T D + + N I++ NK D Sbjct: 287 --LVEQIGVERSKKALQEADLVLLVLNASEPLTDQDRQLLEISKGSN--RIVLLNKTD 340 >gi|324992824|gb|EGC24744.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis SK405] gi|327489811|gb|EGF21601.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis SK1058] Length = 457 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 48/137 (35%), Positives = 85/137 (62%), Gaps = 7/137 (5%) Query: 207 AVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSR 266 A++GRPNVGKS+L+N LL ++ + G TRD + N K P+++ DTAG+R+ Sbjct: 227 AIIGRPNVGKSSLLNNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDD 286 Query: 267 ITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 + +EQ V++S ++++ + +++L+A+ P QD ++++ + + +VL LNK D+ Sbjct: 287 L---VEQIGVERSKKALQEADLVLLVLNASEPLTDQDRQLLE-ISQDSNRIVL-LNKTDL 341 Query: 327 VSDKLNLLQDLRTKAIK 343 +K+ L Q L T AIK Sbjct: 342 -EEKIELDQ-LPTDAIK 356 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 69/118 (58%), Gaps = 5/118 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+++ A+V + G TRD + I GV ++DTAGI + + Sbjct: 227 AIIGRPNVGKSSLLNNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDD 286 Query: 66 CSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + +Q+ ++++ A+ EA L+L ++++ +T D + + N I++ NK D Sbjct: 287 --LVEQIGVERSKKALQEADLVLLVLNASEPLTDQDRQLLEISQDSN--RIVLLNKTD 340 >gi|317049179|ref|YP_004116827.1| GTP-binding protein Era [Pantoea sp. At-9b] gi|316950796|gb|ADU70271.1| GTP-binding protein Era [Pantoea sp. At-9b] Length = 301 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 52/177 (29%), Positives = 89/177 (50%), Gaps = 8/177 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N+L+ +K+++ P TR R+ G VDT G+ + Sbjct: 11 VAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGIHTEGPYQAIYVDTPGLHMEE 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN +I + L++F++D TP D + + LR +P+++ NK+D Sbjct: 71 KRAINRLMNRAASSSIGDVELVIFVVDGTR-WTPDDEMVLNKLRDGKVPVVLAVNKVDN- 128 Query: 125 IAQRNF------YEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 I ++ + ++F +IV ISAE + +++ K + + P E I Sbjct: 129 IQDKSILLPHLQFLGQQMNFTDIVPISAETGKNVDTIAAIVRKRLPKAEHHFPEEYI 185 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 79/166 (47%), Gaps = 7/166 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VGRPNVGKSTL+N+LLG +T + TR + + DT G+ Sbjct: 11 VAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGIHTEGPYQAIYVDTPGLHMEE 70 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + ++ + + + S+ E I ++D T + D +++ + + VVLA+NK D Sbjct: 71 K--RAINRLMNRAASSSIGDVELVIFVVDGT-RWTPDDEMVLNKLRDGKVPVVLAVNKVD 127 Query: 326 MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSV 371 + DK LL L+ Q+ I IS TG+ +D + V Sbjct: 128 NIQDKSILLPHLQFLG----QQMNFTDIVPISAETGKNVDTIAAIV 169 >gi|122702211|emb|CAL88296.1| GTPase [Helicobacter pylori] Length = 170 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 51/156 (32%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + + N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFRINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERSYAFSSFGVPKSFNISVSHNRGISAL 158 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFRINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|88803376|ref|ZP_01118902.1| tRNA modification GTPase [Polaribacter irgensii 23-P] gi|88780942|gb|EAR12121.1| tRNA modification GTPase [Polaribacter irgensii 23-P] Length = 464 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 55/161 (34%), Positives = 89/161 (55%), Gaps = 15/161 (9%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKSTL N L+ ++ A+V G TRD + + II GV F +DTAGI + Sbjct: 225 VAIIGEPNVGKSTLLNTLLNEEKAIVSEIAGTTRDAIEDELIIAGVAFRFIDTAGIRETI 284 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLR-----KKNIP---III 116 + + + E A N A LI+FLID+ ++H FL K P +++ Sbjct: 285 DIIESIGIKKAYEKADN-AQLIVFLIDA----NKFNHNQPQFLTEIDTIKSRFPTKRVLV 339 Query: 117 VSNKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHS 157 ++NK+DT +A E+ + + + ++ +SA+++ G L S Sbjct: 340 IANKIDTLLASEK-AELQT-EIENLILLSAKNNTGVEALKS 378 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/135 (31%), Positives = 67/135 (49%), Gaps = 11/135 (8%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++G PNVGKSTL+N LL + + +G TRD++ DTAG+R+ Sbjct: 225 VAIIGEPNVGKSTLLNTLLNEEKAIVSEIAGTTRDAIEDELIIAGVAFRFIDTAGIRETI 284 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ-----DLRIVDSVFNTGHAVVLA 320 I ES+ +KK+ + + + L+DA Q ++ + S F T +V+A Sbjct: 285 DIIESI---GIKKAYEKADNAQLIVFLIDANKFNHNQPQFLTEIDTIKSRFPTKRVLVIA 341 Query: 321 LNKWD--MVSDKLNL 333 NK D + S+K L Sbjct: 342 -NKIDTLLASEKAEL 355 >gi|4467683|emb|CAB37793.1| GTP-binding protein homologue [Helicobacter pylori] Length = 170 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 50/159 (31%), Positives = 80/159 (50%), Gaps = 2/159 (1%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL +++M + + G TRD + +N ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERMPITSDFAGTTRDFNKRKIALNAHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 K+ ++K++ A + LI +++D K+ + D + S K N +V NK+ Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLISYVVDGKSIPSDEDLKLFSEFFKTNPNCFLVINKI 124 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 D + Y S + IS H+ G S L I Sbjct: 125 DNDKEKERAYAFSSFGIPKSFNISVSHNRGISALIDAIL 163 Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 62/120 (51%), Gaps = 4/120 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERMPITSDFAGTTRDFNKRKIALNAHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +++ ++ +K + S + V+ +IP + +DL++ F T L +NK D Sbjct: 70 LLSKEIKALNLKAAQMSDL---ISYVVDGKSIPSD-EDLKLFSEFFKTNPNCFLVINKID 125 >gi|327462129|gb|EGF08456.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis SK1] Length = 457 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 48/137 (35%), Positives = 85/137 (62%), Gaps = 7/137 (5%) Query: 207 AVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSR 266 A++GRPNVGKS+L+N LL ++ + G TRD + N K P+++ DTAG+R+ Sbjct: 227 AIIGRPNVGKSSLLNNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDD 286 Query: 267 ITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 + +EQ V++S ++++ + +++L+A+ P QD ++++ + + +VL LNK D+ Sbjct: 287 L---VEQIGVERSKKALQEADLVLLVLNASEPLTDQDRQLLE-ISQDSNRIVL-LNKTDL 341 Query: 327 VSDKLNLLQDLRTKAIK 343 +K+ L Q L T AIK Sbjct: 342 -EEKIELDQ-LPTDAIK 356 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 69/118 (58%), Gaps = 5/118 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+++ A+V + G TRD + I GV ++DTAGI + + Sbjct: 227 AIIGRPNVGKSSLLNNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDD 286 Query: 66 CSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + +Q+ ++++ A+ EA L+L ++++ +T D + + N I++ NK D Sbjct: 287 --LVEQIGVERSKKALQEADLVLLVLNASEPLTDQDRQLLEISQDSN--RIVLLNKTD 340 >gi|319954737|ref|YP_004166004.1| tRNA modification gtpase trme [Cellulophaga algicola DSM 14237] gi|319423397|gb|ADV50506.1| tRNA modification GTPase trmE [Cellulophaga algicola DSM 14237] Length = 470 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 51/173 (29%), Positives = 92/173 (53%), Gaps = 14/173 (8%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VG PNVGKSTL+N LL +R + +G TRD++ + DTAG+R+ Sbjct: 224 VAIVGEPNVGKSTLLNSLLNEDRAIVSDIAGTTRDTIEDELSIDGIGFRFIDTAGIRETQ 283 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD---LRI-VDSVFNT--GHAVVL 319 I E + +KK+ + ++ E + L+D + EK+ L+I ++ + N +++L Sbjct: 284 DIVEGI---GIKKTFEKIKQAEVVLYLIDGALIKEKKQIDALKIEIEKIKNQFPQKSILL 340 Query: 320 ALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVL 372 +NK D ++ + L ++ Q+ I+ I+ +TGEG++DL +L Sbjct: 341 LVNKADKIATETTTLISSEMASLS--AQLKTIF---IAAKTGEGVEDLKEELL 388 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 35/88 (39%), Positives = 53/88 (60%), Gaps = 1/88 (1%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N L+ + A+V + G TRD + + I+G+ F +DTAGI + + Sbjct: 224 VAIVGEPNVGKSTLLNSLLNEDRAIVSDIAGTTRDTIEDELSIDGIGFRFIDTAGIRETQ 283 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDS 92 + + E I +A ++L+LID Sbjct: 284 DIVEGIGIKKTFE-KIKQAEVVLYLIDG 310 >gi|307243689|ref|ZP_07525829.1| GTP-binding protein Era [Peptostreptococcus stomatis DSM 17678] gi|306492898|gb|EFM64911.1| GTP-binding protein Era [Peptostreptococcus stomatis DSM 17678] Length = 300 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 57/167 (34%), Positives = 88/167 (52%), Gaps = 12/167 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 ++IVG PNVGKSTL N +V +K+A++ + P TR+ + + +DT GI K Sbjct: 8 VSIVGRPNVGKSTLMNNMVGEKIAIMSDKPQTTRNTIQAVYTDDQAQIVFLDTPGIHKPK 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N + + M E + ILF++D I D I LRK +P+ +V NK+D + Sbjct: 68 N-KLGQMMVKSAEESFKNVDCILFVVDDSDKIGKGDSMIIENLRKAKVPVFLVINKVD-K 125 Query: 125 IAQR----NFYEIYSLD--FKEIVEISAEHDLGTSELHSVIFKIFKQ 165 IA + + ++Y + FKEI+ +SA L S + S+I K KQ Sbjct: 126 IANKEEIFDLIKMYDQEGLFKEIIPVSA---LKGSNVDSLI-KAIKQ 168 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 65/125 (52%), Gaps = 3/125 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +++VGRPNVGKSTL+N ++G + + TR+++ + I DT G+ KP Sbjct: 8 VSIVGRPNVGKSTLMNNMVGEKIAIMSDKPQTTRNTIQAVYTDDQAQIVFLDTPGIHKPK 67 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L Q VK + +S + + + ++D + K D I++++ V L +NK D Sbjct: 68 N---KLGQMMVKSAEESFKNVDCILFVVDDSDKIGKGDSMIIENLRKAKVPVFLVINKVD 124 Query: 326 MVSDK 330 +++K Sbjct: 125 KIANK 129 >gi|324994536|gb|EGC26449.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis SK678] Length = 457 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 48/137 (35%), Positives = 85/137 (62%), Gaps = 7/137 (5%) Query: 207 AVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSR 266 A++GRPNVGKS+L+N LL ++ + G TRD + N K P+++ DTAG+R+ Sbjct: 227 AIIGRPNVGKSSLLNNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDD 286 Query: 267 ITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 + +EQ V++S ++++ + +++L+A+ P QD ++++ + + +VL LNK D+ Sbjct: 287 L---VEQIGVERSKKALQEADLVLLVLNASEPLTDQDRQLLE-ISQDSNRIVL-LNKTDL 341 Query: 327 VSDKLNLLQDLRTKAIK 343 +K+ L Q L T AIK Sbjct: 342 -EEKIELDQ-LPTDAIK 356 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 69/118 (58%), Gaps = 5/118 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+++ A+V + G TRD + I GV ++DTAGI + + Sbjct: 227 AIIGRPNVGKSSLLNNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDD 286 Query: 66 CSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + +Q+ ++++ A+ EA L+L ++++ +T D + + N I++ NK D Sbjct: 287 --LVEQIGVERSKKALQEADLVLLVLNASEPLTDQDRQLLEISQDSN--RIVLLNKTD 340 >gi|292806636|gb|ADE42448.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 52/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G + L I Sbjct: 123 KIDNDKEKERSYAFSSFGIPKSFNISVSHNRGINALIDAIL 163 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|325912241|ref|ZP_08174638.1| tRNA modification GTPase TrmE [Lactobacillus iners UPII 143-D] gi|325475900|gb|EGC79069.1| tRNA modification GTPase TrmE [Lactobacillus iners UPII 143-D] Length = 461 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 57/176 (32%), Positives = 90/176 (51%), Gaps = 4/176 (2%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AIVG PNVGKS+L N L K++ A+V + G TRD L + G++ ++DTAGI + Sbjct: 228 AIVGRPNVGKSSLLNYLSKEEKAIVTSIAGTTRDTLEEYVSLKGILLKLIDTAGIRQTDD 287 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 + K ++++ AI E+ L+L LI+S +T D + + K II+ NK D ++ Sbjct: 288 I-VEKIGVERSKRAITESDLVLLLINSSEELTEEDQKLLELTQDK--KRIIILNKAD-QV 343 Query: 126 AQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 A+ +I + IV IS L I +F Q + E++ N+R Sbjct: 344 AKITKKDIQKITDSPIVTISVLKKQNMIGLEEAIKSLFLQGITDSKSEVMVTNQRQ 399 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 37/131 (28%), Positives = 74/131 (56%), Gaps = 5/131 (3%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + L A+VGRPNVGKS+L+N L + + S +G TRD++ + K +++ D Sbjct: 219 KVVRSGLATAIVGRPNVGKSSLLNYLSKEEKAIVTSIAGTTRDTLEEYVSLKGILLKLID 278 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ I E + V++S +++ + ++L++++ ++D ++++ Sbjct: 279 TAGIRQTDDIVEKI---GVERSKRAITESDLVLLLINSSEELTEEDQKLLE--LTQDKKR 333 Query: 318 VLALNKWDMVS 328 ++ LNK D V+ Sbjct: 334 IIILNKADQVA 344 >gi|269468621|gb|EEZ80265.1| GTPase [uncultured SUP05 cluster bacterium] Length = 294 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 52/162 (32%), Positives = 83/162 (51%), Gaps = 6/162 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTL N L+ +K+++ + P TR R++ + VDT GI G Sbjct: 8 IAVVGRPNVGKSTLINELIGQKLSITSHRPQTTRHRIHAIDTADNYQMVFVDTPGIHIGN 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 +I MN +I + +IL+L++S T D + + + ++P+I+ NK+D Sbjct: 68 KKAINSYMNKAASSSIRDVDMILWLVESDKW-TKEDSRVLEHIEQVDVPVILCINKIDKL 126 Query: 124 RIAQR--NFYEIYSLDFK--EIVEISAEHDLGTSELHSVIFK 161 R AQ F E + ++ E+ +SA T L +I K Sbjct: 127 RSAQEVLPFLEKIATKYQPTELFPLSAFKKRDTQALRELILK 168 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 42/141 (29%), Positives = 71/141 (50%), Gaps = 3/141 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IAVVGRPNVGKSTLIN L+G +T + TR + N+ + DT G+ + Sbjct: 8 IAVVGRPNVGKSTLINELIGQKLSITSHRPQTTRHRIHAIDTADNYQMVFVDTPGIHIGN 67 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + +++ K + S+R + + L+++ + K+D R+++ + V+L +NK D Sbjct: 68 K--KAINSYMNKAASSSIRDVDMILWLVESD-KWTKEDSRVLEHIEQVDVPVILCINKID 124 Query: 326 MVSDKLNLLQDLRTKAIKNLP 346 + +L L A K P Sbjct: 125 KLRSAQEVLPFLEKIATKYQP 145 >gi|291532561|emb|CBL05674.1| tRNA modification GTPase trmE [Megamonas hypermegale ART12/1] Length = 465 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 52/158 (32%), Positives = 84/158 (53%), Gaps = 10/158 (6%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+++ A+V + PG TRD L A I GV I+DTAGI + ++ Sbjct: 230 AIIGKPNVGKSSLLNTLLREDRAIVTDIPGTTRDSLEEYANIGGVPLKIIDTAGIRETED 289 Query: 66 ----CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 + K M+ + +A LIL L D+ + +T D I + L+ K +++ N + Sbjct: 290 KVEQIGVEKSMS-----YVQKADLILALFDTSSDLTKEDEEIINLLQGKEGIVLLTKNDL 344 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVI 159 + + + +FK ++IS ++ G EL I Sbjct: 345 SCVLDIEDLQKRLQGNFK-YMQISTFNNDGIKELEQEI 381 Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 57/180 (31%), Positives = 93/180 (51%), Gaps = 16/180 (8%) Query: 169 NHPLEMIENNKRNEESPK----ENITSEGKSSVKNISKPLR----IAVVGRPNVGKSTLI 220 + P + IE+ ++E S K +N E S+ N + LR A++G+PNVGKS+L+ Sbjct: 185 DFPEDDIEDVAKDEASAKVRSIKNRIEEMLSTF-NTGRILRDGLVTAIIGKPNVGKSSLL 243 Query: 221 NRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSM 280 N LL +R + G TRDS+ N P++I DTAG+R+ + +EQ V+KSM Sbjct: 244 NTLLREDRAIVTDIPGTTRDSLEEYANIGGVPLKIIDTAGIRETE---DKVEQIGVEKSM 300 Query: 281 QSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTK 340 V+ + + L D + K+D I++ + V+L N V D ++DL+ + Sbjct: 301 SYVQKADLILALFDTSSDLTKEDEEIINLLQGKEGIVLLTKNDLSCVLD----IEDLQKR 356 >gi|317472456|ref|ZP_07931779.1| GTP-binding protein Era [Anaerostipes sp. 3_2_56FAA] gi|316900074|gb|EFV22065.1| GTP-binding protein Era [Anaerostipes sp. 3_2_56FAA] Length = 301 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 61/194 (31%), Positives = 93/194 (47%), Gaps = 15/194 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIV--DTAGIAD 62 + ++G PNVGKSTL N+L+ +K+A+ P TR+R+ Q + IV DT GI Sbjct: 10 VTLIGRPNVGKSTLMNQLIGQKIAITSKKPQTTRNRI--QTVFTDERGQIVFLDTPGINR 67 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 KN + M E +NE LIL+L++ I + I L K P+I+V NK D Sbjct: 68 AKN-KLGDYMLKVAERTLNEVDLILWLVEPTTFIGGGERYIIEQLGKVKTPVILVINKTD 126 Query: 123 TRIAQRNFYEIYS----LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 T + I + +F EI+ +SA T ++ IFK P P+ E+ Sbjct: 127 TVKDEEILKAITTYKDVCEFAEIIPVSALKGQNTDDVTDSIFKYL----PEGPMFFDEDT 182 Query: 179 KRNEESPKENITSE 192 ++ P+ I +E Sbjct: 183 VTDQ--PERQICAE 194 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 42/168 (25%), Positives = 84/168 (50%), Gaps = 8/168 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 + ++GRPNVGKSTL+N+L+G +T + TR+ + + + I DT G+ + Sbjct: 10 VTLIGRPNVGKSTLMNQLIGQKIAITSKKPQTTRNRIQTVFTDERGQIVFLDTPGI---N 66 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 R L +K + +++ + + L++ T + I++ + V+L +NK D Sbjct: 67 RAKNKLGDYMLKVAERTLNEVDLILWLVEPTTFIGGGERYIIEQLGKVKTPVILVINKTD 126 Query: 326 MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 V D+ +L+ + T K++ + +I +S G+ DD+ S+ + Sbjct: 127 TVKDE-EILKAITT--YKDVCEFAEII--PVSALKGQNTDDVTDSIFK 169 >gi|326791151|ref|YP_004308972.1| GTP-binding protein Era [Clostridium lentocellum DSM 5427] gi|326541915|gb|ADZ83774.1| GTP-binding protein Era [Clostridium lentocellum DSM 5427] Length = 302 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 51/148 (34%), Positives = 80/148 (54%), Gaps = 9/148 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIV--DTAGIAD 62 ++I+G PNVGKSTL N+L+ +K+A++ N P TR+R+ Q ++ + V DT GI Sbjct: 10 VSIIGRPNVGKSTLMNKLIGEKVAIMSNKPQTTRNRI--QTVLTTKHYQAVFIDTPGIHT 67 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 KN + + M +NE I +L++++ I D I L+ P+ + NK+D Sbjct: 68 PKN-KLGEFMVKSAMTTLNEVDAIFYLVEAEPFIGKTDQEIIERLKGIQTPVFLCINKID 126 Query: 123 T--RIAQRNFYEIY--SLDFKEIVEISA 146 + R E Y + DFKEI+ ISA Sbjct: 127 SVPRETVLKTIETYREAYDFKEIIPISA 154 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 ++++GRPNVGKSTL+N+L+G + ++ TR+ + K++ DT G+ P Sbjct: 10 VSIIGRPNVGKSTLMNKLIGEKVAIMSNKPQTTRNRIQTVLTTKHYQAVFIDTPGIHTPK 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + VK +M ++ + L++A K D I++ + V L +NK D Sbjct: 70 N---KLGEFMVKSAMTTLNEVDAIFYLVEAEPFIGKTDQEIIERLKGIQTPVFLCINKID 126 Query: 326 MV 327 V Sbjct: 127 SV 128 >gi|122702373|emb|CAL88377.1| GTPase [Helicobacter pylori] Length = 170 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 51/156 (32%), Positives = 82/156 (52%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G L Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGIGAL 158 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|78223518|ref|YP_385265.1| GTP-binding protein Era [Geobacter metallireducens GS-15] gi|123571481|sp|Q39T84|ERA_GEOMG RecName: Full=GTPase Era gi|78194773|gb|ABB32540.1| GTP-binding protein Era [Geobacter metallireducens GS-15] Length = 298 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 54/176 (30%), Positives = 89/176 (50%), Gaps = 17/176 (9%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 ++I+G PNVGKSTL NR++ +K+ + + P TR+R+ G + G +DT GI + Sbjct: 11 VSIIGRPNVGKSTLLNRILGEKIVITSDKPQTTRNRIQGIHNVPGAQIVFIDTPGIHQAR 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD-- 122 + + K M + AI E L+LFL+++ + I L P+ +V NK+D Sbjct: 71 S-RLNKYMVEVALSAIREVDLVLFLVEANQKPGEQEQEIIDVLAGATAPVFLVINKVDLT 129 Query: 123 ------TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPL 172 RIA + + Y F+EIV ISA GT + + ++ ++ P P+ Sbjct: 130 EKGAVLERIAA--YKDRYP--FREIVPISA----GTGDGVDHLVELVRKALPQGPV 177 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 48/163 (29%), Positives = 86/163 (52%), Gaps = 8/163 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 ++++GRPNVGKSTL+NR+LG ++T + TR+ + N I DT G+ + Sbjct: 11 VSIIGRPNVGKSTLLNRILGEKIVITSDKPQTTRNRIQGIHNVPGAQIVFIDTPGIHQAR 70 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + V+ ++ ++R + + L++A +Q+ I+D + V L +NK D Sbjct: 71 ---SRLNKYMVEVALSAIREVDLVLFLVEANQKPGEQEQEIIDVLAGATAPVFLVINKVD 127 Query: 326 MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLM 368 + ++K +L+ R A K+ +I IS TG+G+D L+ Sbjct: 128 L-TEKGAVLE--RIAAYKDRYPFREIV--PISAGTGDGVDHLV 165 >gi|52627366|gb|AAU84697.1| tRNA modification GTPase TrmE [Prevotella intermedia] Length = 467 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 55/165 (33%), Positives = 92/165 (55%), Gaps = 13/165 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G NVGKSTL NRL++ A+V N G TRD + INGV F+ +DTAGI K Sbjct: 228 VAIIGKTNVGKSTLLNRLLRDNRAIVSNIHGTTRDIIEDTISINGVDFHFIDTAGIR--K 285 Query: 65 NCSIAKQMNDQTELA-INEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD- 122 +Q+ + LA + +A ++L+++D++ + + K +I+V NK+D Sbjct: 286 TTDYVEQLGIERTLATLEKAQIVLWVVDNEPTESEKKEILAQCTDKH---LILVHNKVDD 342 Query: 123 -TRIAQRNFYEIYSLD----FKEIVEISAEHDLGTSELHSVIFKI 162 T + + S D + EI IS +++LG ++L ++I+K+ Sbjct: 343 LTEPTNQQNHAATSHDSTYTYHEIA-ISGKYNLGINQLEALIYKV 386 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 69/127 (54%), Gaps = 6/127 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++G+ NVGKSTL+NRLL NR + + G TRD + + + DTAG+RK Sbjct: 228 VAIIGKTNVGKSTLLNRLLRDNRAIVSNIHGTTRDIIEDTISINGVDFHFIDTAGIRKT- 286 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 T+ +EQ +++++ ++ + + ++D P E + I+ T ++L NK D Sbjct: 287 --TDYVEQLGIERTLATLEKAQIVLWVVDNE-PTESEKKEILAQC--TDKHLILVHNKVD 341 Query: 326 MVSDKLN 332 +++ N Sbjct: 342 DLTEPTN 348 >gi|194017708|ref|ZP_03056318.1| GTP-binding protein Era [Bacillus pumilus ATCC 7061] gi|194010608|gb|EDW20180.1| GTP-binding protein Era [Bacillus pumilus ATCC 7061] Length = 301 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 50/146 (34%), Positives = 76/146 (52%), Gaps = 5/146 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 ++I+G PNVGKST NR++ +K+A++ + P TR+++ G N +DT GI K Sbjct: 11 VSIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKVQGVLTTNTSQTIFIDTPGIHKPK 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + M + E LILF+I++K G D I L++ + P+ +V NK+D Sbjct: 71 H-KLGDFMMKVATNTLKEVDLILFMINAKEGYGKGDEFIIERLKQTSTPVFLVVNKIDQI 129 Query: 125 IAQRNFYEI----YSLDFKEIVEISA 146 F I FKEIV ISA Sbjct: 130 HPDELFLLIDEYRTRYPFKEIVPISA 155 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 4/132 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 ++++GRPNVGKST +NR++G + + TR+ V DT G+ KP Sbjct: 11 VSIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKVQGVLTTNTSQTIFIDTPGIHKPK 70 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L +K + +++ + + +++A + K D I++ + T V L +NK D Sbjct: 71 H---KLGDFMMKVATNTLKEVDLILFMINAKEGYGKGDEFIIERLKQTSTPVFLVVNKID 127 Query: 326 MVS-DKLNLLQD 336 + D+L LL D Sbjct: 128 QIHPDELFLLID 139 >gi|94971754|ref|YP_593802.1| tRNA modification GTPase TrmE [Candidatus Koribacter versatilis Ellin345] gi|205829050|sp|Q1IHC2|MNME_ACIBL RecName: Full=tRNA modification GTPase mnmE gi|94553804|gb|ABF43728.1| tRNA modification GTPase trmE [Candidatus Koribacter versatilis Ellin345] Length = 454 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 46/120 (38%), Positives = 73/120 (60%), Gaps = 4/120 (3%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AIVG PNVGKS+LFNRLV++ A+V PG TRD + + G+ ++VDTAGI + Sbjct: 223 TLAIVGRPNVGKSSLFNRLVERDRAIVTAIPGTTRDLVTETVSLGGIPVHLVDTAGIRES 282 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGIT-PYDHAITSFLRKKNIPIIIVSNKMD 122 + + + + E A+ +A L+L ++D+ A DH + S +++ I+V NK+D Sbjct: 283 HDEAESIGIQKSRE-AMADADLVLVVVDAHAETGHELDHQLISAAAERS--AILVENKID 339 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 37/104 (35%), Positives = 64/104 (61%), Gaps = 3/104 (2%) Query: 192 EGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNH 251 EG + K + + L +A+VGRPNVGKS+L NRL+ +R + + G TRD V+ + + Sbjct: 210 EGFAFGKVVHEGLTLAIVGRPNVGKSSLFNRLVERDRAIVTAIPGTTRDLVTETVSLGGI 269 Query: 252 PIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDA 295 P+ + DTAG+R+ ES+ ++KS +++ + +V++DA Sbjct: 270 PVHLVDTAGIRESHDEAESI---GIQKSREAMADADLVLVVVDA 310 >gi|94502356|ref|ZP_01308823.1| tRNA modification GTPase TrmE [Candidatus Sulcia muelleri str. Hc (Homalodisca coagulata)] gi|94451088|gb|EAT14046.1| tRNA modification GTPase TrmE [Candidatus Sulcia muelleri str. Hc (Homalodisca coagulata)] Length = 429 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 38/88 (43%), Positives = 57/88 (64%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 +++I+G PNVGKSTLFN+L+K + ++V N G TR+ + IING+ F +DTAGI + Sbjct: 196 SVSIIGCPNVGKSTLFNKLLKYERSIVSNIAGTTRNYIEDSLIINGIKFRFIDTAGINNN 255 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLID 91 I K +T IN++ LIL++ D Sbjct: 256 TKDYIEKLGIKKTYSKINKSDLILYVFD 283 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 26/91 (28%), Positives = 49/91 (53%), Gaps = 2/91 (2%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 + ++++G PNVGKSTL N+LL Y R + + +G TR+ + S DTAG+ Sbjct: 195 ISVSIIGCPNVGKSTLFNKLLKYERSIVSNIAGTTRNYIEDSLIINGIKFRFIDTAGINN 254 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLD 294 ++ + +E+ +KK+ + + + + D Sbjct: 255 NTK--DYIEKLGIKKTYSKINKSDLILYVFD 283 >gi|88812350|ref|ZP_01127600.1| GTP-binding protein Era [Nitrococcus mobilis Nb-231] gi|88790357|gb|EAR21474.1| GTP-binding protein Era [Nitrococcus mobilis Nb-231] Length = 310 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 51/177 (28%), Positives = 83/177 (46%), Gaps = 6/177 (3%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 A+VG PNVGKSTL N L+ +K+ +V P TR R+ G + G VDT G+ +N Sbjct: 23 ALVGRPNVGKSTLLNTLLGRKVTIVSRKPQTTRHRILGIHTLTGAQIVYVDTPGLHRQEN 82 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 ++ + +N + EA + +FL+D+ T D + L P+I+ NK+D Sbjct: 83 TAMNRCLNRTATTVLAEADVAVFLVDALR-WTQEDEFVLERLTPFANPVILALNKIDRLR 141 Query: 126 AQRNFYEIYS-----LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 A++ + DF +V +SA + + L + I + P E I + Sbjct: 142 AKQALLPLIDRLSGRRDFAAVVPVSASRGINLAALEAEIVQQLPNSVAYFPQEQITD 198 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 36/128 (28%), Positives = 63/128 (49%), Gaps = 3/128 (2%) Query: 207 AVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSR 266 A+VGRPNVGKSTL+N LLG + + TR + I DT G+ + Sbjct: 23 ALVGRPNVGKSTLLNTLLGRKVTIVSRKPQTTRHRILGIHTLTGAQIVYVDTPGLHRQE- 81 Query: 267 ITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 ++ + + + + + + L+DA + + ++D +++ + + V+LALNK D Sbjct: 82 -NTAMNRCLNRTATTVLAEADVAVFLVDA-LRWTQEDEFVLERLTPFANPVILALNKIDR 139 Query: 327 VSDKLNLL 334 + K LL Sbjct: 140 LRAKQALL 147 >gi|254302386|ref|ZP_04969744.1| thiophene/furan oxidation protein ThdF [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148322578|gb|EDK87828.1| thiophene/furan oxidation protein ThdF [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 455 Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 49/159 (30%), Positives = 87/159 (54%), Gaps = 7/159 (4%) Query: 171 PLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLL 230 P +++N K+ KE ++S K + I ++ A++G+PNVGKS+++N LL +R + Sbjct: 189 PENLVDNLKKASAEIKELVSSYDKGKI--IKDGIKTAIIGKPNVGKSSILNSLLREDRAI 246 Query: 231 TGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTI 290 G TRD + N P+ + DTAG+R I E++ V+KS + + + + + Sbjct: 247 VTHIPGTTRDIIEEVININGIPLLLVDTAGIRNTDDIVENI---GVEKSKELINSADLIL 303 Query: 291 VLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSD 329 ++D + +++D RI D + NT V+ LNK D+ D Sbjct: 304 YVIDTSREIDEEDYRIYD-IINT-DKVIGILNKIDIKQD 340 Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 58/182 (31%), Positives = 96/182 (52%), Gaps = 11/182 (6%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS++ N L+++ A+V + PG TRD + ING+ +VDTAGI + + Sbjct: 223 AIIGKPNVGKSSILNSLLREDRAIVTHIPGTTRDIIEEVININGIPLLLVDTAGIRNTDD 282 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR- 124 + EL IN A LIL++ID+ I D+ I + +I + NK+D + Sbjct: 283 IVENIGVEKSKEL-INSADLILYVIDTSREIDEEDYRIYDIINTD--KVIGILNKIDIKQ 339 Query: 125 -IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK-IFKQKYPNHPLEMIENNKRNE 182 I F +I ++ +EISA +G L + I+K I + + +++ N R++ Sbjct: 340 DIDLSKFPKI-----EKWIEISALSKIGIDNLENEIYKYIMNENVEDSSQKLVITNVRHK 394 Query: 183 ES 184 + Sbjct: 395 SA 396 >gi|292806514|gb|ADE42387.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 82/156 (52%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ +K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALWSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISAL 158 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/122 (31%), Positives = 65/122 (53%), Gaps = 8/122 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAK-- 67 Query: 266 RITESLEQKTVKK-SMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNK 323 ++L K +K ++++ + + + ++D +IP + +DL++ VF L +NK Sbjct: 68 ---DALWSKEIKALNLKAAQMSDLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINK 123 Query: 324 WD 325 D Sbjct: 124 ID 125 >gi|70934794|ref|XP_738573.1| hypothetical protein [Plasmodium chabaudi chabaudi] gi|56514900|emb|CAH78696.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi] Length = 281 Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 64/274 (23%), Positives = 128/274 (46%), Gaps = 19/274 (6%) Query: 203 PLRIAVVGRPNVGKSTLINRLLGYNRL-------LTGSQSGITRDSVSISWNWKNHPIEI 255 +++ ++G N GK+TLI +L N + L G + + +SI + K+ I I Sbjct: 1 EIKVCILGEKNCGKTTLIETVLKKNIINENDIYELFGKKRKYVNEDMSIVY--KDQKISI 58 Query: 256 FDTAGMRKPSRI-TESLEQKTVKKSMQSVRTCETTIVLLDA---TIPFEKQDLRIVDSVF 311 DT ++K R E L + ++R + + + +A I K D +++ + Sbjct: 59 LDTCSLKKQHRFRNEDLYYDEENRVYNNIRKSDICVYIKEAKDNNICLNKDDKKMLFYLL 118 Query: 312 NTGHAVVLALNKWDM-VSDKLNLLQDLRTKAIKNLPQ-IGDIYINTISGRTGEGLDDLMV 369 ++ ++K D+ V+D ++ R++ +K++ DI + ++ ++ L+ Sbjct: 119 KEKKNIIFIVSKIDLIVTD----YENKRSEFLKSITNTFSDIPVLFLNNNNDSHVNSLLK 174 Query: 370 SVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFLIFCTF 429 + INK I+TS LN +L + P P + + K+I QI+ +P +FLIF Sbjct: 175 LITHINKRNNITISTSTLNLFLIQFIKLFPIPWLKKQKCNFKFIKQIRQNPVTFLIFTNL 234 Query: 430 PNKIPESYKRYLINRLRINFSLSGIPIRMCFQSS 463 IP +Y + +L+ F L + I+ F+++ Sbjct: 235 YKNIPNNYLTFFKKKLKDQFDLKYVNIQFVFKTT 268 >gi|206901698|ref|YP_002251036.1| GTP-binding protein Era [Dictyoglomus thermophilum H-6-12] gi|206740801|gb|ACI19859.1| GTP-binding protein Era [Dictyoglomus thermophilum H-6-12] Length = 297 Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 46/147 (31%), Positives = 80/147 (54%), Gaps = 6/147 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 I IVG PN GKSTL N LV +K+++V + P TR R+ G + F +DT G K Sbjct: 9 IGIVGKPNAGKSTLINLLVGEKVSIVADKPQTTRQRILGVLTLEDAQFIFLDTPGWFPPK 68 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 + + + M + I ++ ++L++IDS + + + F++ + P +++ NK+D Sbjct: 69 HL-LGEYMQKTIKKTIEDSDIVLYVIDSSVELDEDNRTLLKFVKDQGKPYLVLLNKIDMV 127 Query: 124 --RIAQRNFYEIYSLDFKE--IVEISA 146 ++ + E+ SL +E I+EISA Sbjct: 128 SPKVLEERKKEVISLGVEEERIMEISA 154 Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 36/126 (28%), Positives = 65/126 (51%), Gaps = 3/126 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 I +VG+PN GKSTLIN L+G + + TR + ++ DT G P Sbjct: 9 IGIVGKPNAGKSTLINLLVGEKVSIVADKPQTTRQRILGVLTLEDAQFIFLDTPGWFPPK 68 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + QKT+KK+++ + + ++D+++ ++ + ++ V + G ++ LNK D Sbjct: 69 HLLGEYMQKTIKKTIED---SDIVLYVIDSSVELDEDNRTLLKFVKDQGKPYLVLLNKID 125 Query: 326 MVSDKL 331 MVS K+ Sbjct: 126 MVSPKV 131 >gi|221055545|ref|XP_002258911.1| hypothetical protein, conserved in Plasmodium species [Plasmodium knowlesi strain H] gi|193808981|emb|CAQ39684.1| hypothetical protein, conserved in Plasmodium species [Plasmodium knowlesi strain H] Length = 790 Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 68/292 (23%), Positives = 132/292 (45%), Gaps = 18/292 (6%) Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRL-------LTGSQSG 236 + +E+ T + ++ + + L + ++G N GK+TL+ +L + L G + Sbjct: 486 THEEDTTQDEVTTPEEGTTHLHVCILGERNCGKTTLMEAILKRPIVRDEDVVELFGRKKY 545 Query: 237 ITRDSVSISWNWKNHPIEIFDTAGMRKPSRI----TESLEQKTVKKSMQSVRTCETTIVL 292 I +D + KN I + DT + K R T E K V ++ C Sbjct: 546 INKDQTT---EHKNVEITVADTCSLTKQHRFRGEDTYHHESKQVFTNVHKSNICVYVKEA 602 Query: 293 LDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQI-GDI 351 + TI K+D +I+ + ++ + K D + L+ ++ + + + + DI Sbjct: 603 KENTISLSKEDKKIMFYLLKKKKNIIFVVTKIDTI---LSNFEEKKNEFLSSFSSSFNDI 659 Query: 352 YINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLK 411 + ++ L +L+ ++ I+K+ RI TS LN +L + P P + + K Sbjct: 660 PVVFLNPNNKMHLQNLLNRIVHIHKMSYVRIPTSILNLFLIRFLQLFPIPWVRKKKCNFK 719 Query: 412 YITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSS 463 YI Q+ ++P +FLIF + IP +Y + RL+ F L G+ I+ F+++ Sbjct: 720 YIRQVNTNPVTFLIFTNLYHNIPNNYLSFFKKRLKDEFHLRGVNIQFIFRTT 771 >gi|282877893|ref|ZP_06286702.1| tRNA modification GTPase TrmE [Prevotella buccalis ATCC 35310] gi|281299894|gb|EFA92254.1| tRNA modification GTPase TrmE [Prevotella buccalis ATCC 35310] Length = 469 Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 49/121 (40%), Positives = 70/121 (57%), Gaps = 6/121 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG NVGKSTL N+L+K++ A+V N G TRD + I GV F +DTAGI Sbjct: 239 VAIVGKTNVGKSTLLNQLLKEEKAIVSNIHGTTRDVIEDTTEIKGVTFRFIDTAGIR-ST 297 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRK-KNIPIIIVSNKMDT 123 N I + ++T +NEA +IL+L+D + P I L ++ +I+V NK+D Sbjct: 298 NDEIERLGIERTYKKLNEARIILWLVDEQ----PNRSEIQEMLEYCEDKQVILVQNKIDI 353 Query: 124 R 124 R Sbjct: 354 R 354 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 1/82 (1%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + +A+VG+ NVGKSTL+N+LL + + + G TRD + + K D Sbjct: 231 KAYKQGVAVAIVGKTNVGKSTLLNQLLKEEKAIVSNIHGTTRDVIEDTTEIKGVTFRFID 290 Query: 258 TAGMRKPSRITESLE-QKTVKK 278 TAG+R + E L ++T KK Sbjct: 291 TAGIRSTNDEIERLGIERTYKK 312 >gi|294637612|ref|ZP_06715891.1| GTP-binding protein Era [Edwardsiella tarda ATCC 23685] gi|291089167|gb|EFE21728.1| GTP-binding protein Era [Edwardsiella tarda ATCC 23685] Length = 176 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 56/176 (31%), Positives = 90/176 (51%), Gaps = 24/176 (13%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYG-------QAIINGVIFNIVDT 57 IAIVG PNVGKSTL N+L+ +K+++ P TR R+ G QAI VDT Sbjct: 11 IAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGIHTEGPYQAI-------YVDT 63 Query: 58 AGIADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIV 117 G+ + +I + MN +I + L++F+++ TP D + + LR P+I+ Sbjct: 64 PGLHIEEKRAINRLMNRAASSSIGDVELVIFVVEGTHW-TPDDEMVVNKLRDLKCPVILA 122 Query: 118 SNKMDTRIAQRNF-----YEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYP 168 NK+D + + + ++F ++V ISAE GT+ I +I +Q+ P Sbjct: 123 INKVDNVVDKTALLPHIQFLSQQMNFLDVVPISAEK--GTNV--DTIARIVRQRLP 174 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 43/130 (33%), Positives = 64/130 (49%), Gaps = 5/130 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMR-KP 264 IA+VGRPNVGKSTL+N+LLG +T + TR + + DT G+ + Sbjct: 11 IAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGIHTEGPYQAIYVDTPGLHIEE 70 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 R L + S+ V E I +++ T + D +V+ + + V+LA+NK Sbjct: 71 KRAINRLMNRAASSSIGDV---ELVIFVVEGT-HWTPDDEMVVNKLRDLKCPVILAINKV 126 Query: 325 DMVSDKLNLL 334 D V DK LL Sbjct: 127 DNVVDKTALL 136 >gi|254414160|ref|ZP_05027927.1| tRNA modification GTPase TrmE [Microcoleus chthonoplastes PCC 7420] gi|196178835|gb|EDX73832.1| tRNA modification GTPase TrmE [Microcoleus chthonoplastes PCC 7420] Length = 460 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 44/118 (37%), Positives = 70/118 (59%), Gaps = 3/118 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKS+L N + A+V + PG TRD + Q ++ G+ ++DTAGI + Sbjct: 228 IAIVGRPNVGKSSLLNAWSRSDRAIVTDLPGTTRDVVESQLVVGGIPIQVLDTAGIRETV 287 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + + K +++ A A LI+ +I++ AG + D I + + K+ P+I+V NK D Sbjct: 288 D-QVEKIGVERSRRAAEAADLIVLVIEATAGWSSDDQEI--YTQVKHRPLILVINKTD 342 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 39/123 (31%), Positives = 67/123 (54%), Gaps = 5/123 (4%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 L IA+VGRPNVGKS+L+N +R + G TRD V PI++ DTAG+R+ Sbjct: 226 LNIAIVGRPNVGKSSLLNAWSRSDRAIVTDLPGTTRDVVESQLVVGGIPIQVLDTAGIRE 285 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 + +E+ V++S ++ + +++++AT + D I V + ++L +NK Sbjct: 286 ---TVDQVEKIGVERSRRAAEAADLIVLVIEATAGWSSDDQEIYTQVKH--RPLILVINK 340 Query: 324 WDM 326 D+ Sbjct: 341 TDL 343 >gi|126662354|ref|ZP_01733353.1| tRNA modification GTPase [Flavobacteria bacterium BAL38] gi|126625733|gb|EAZ96422.1| tRNA modification GTPase [Flavobacteria bacterium BAL38] Length = 471 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 57/167 (34%), Positives = 92/167 (55%), Gaps = 19/167 (11%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N L+ ++ A+V + G TRD + + +ING+ F +DTAGI + K Sbjct: 231 VAIVGEPNVGKSTLLNALLNEERAIVSDIAGTTRDTIEDELVINGMSFRFIDTAGIRETK 290 Query: 65 NC--SIAKQMNDQTELAINEAHLILFLIDSK----AGITPYDHAITSFLRKKN----IPI 114 + SI Q +T I +A ++LF++D + AG + F + KN P+ Sbjct: 291 DVVESIGIQ---KTFEKIEQAQVVLFILDGRWMMEAG--SLEAVKIEFEKIKNKFPLKPV 345 Query: 115 IIVSNKMDTRIA-QRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 ++++NK D A Q+N + + I+ +SA+ G EL + + Sbjct: 346 VVIANKADLLSADQKNNIQAT---IENILFLSAKQKEGIDELKNTLL 389 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 54/185 (29%), Positives = 88/185 (47%), Gaps = 23/185 (12%) Query: 196 SVKNISK-PLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIE 254 +V N+ K + +A+VG PNVGKSTL+N LL R + +G TRD++ Sbjct: 220 AVGNVIKNGIPVAIVGEPNVGKSTLLNALLNEERAIVSDIAGTTRDTIEDELVINGMSFR 279 Query: 255 IFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNT- 313 DTAG+R+ + ES+ ++K+ + + + + +LD E L V F Sbjct: 280 FIDTAGIRETKDVVESI---GIQKTFEKIEQAQVVLFILDGRWMMEAGSLEAVKIEFEKI 336 Query: 314 -----GHAVVLALNKWDMVS-DKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDL 367 VV+ NK D++S D+ N +Q I+N I +S + EG+D+L Sbjct: 337 KNKFPLKPVVVIANKADLLSADQKNNIQ----ATIEN--------ILFLSAKQKEGIDEL 384 Query: 368 MVSVL 372 ++L Sbjct: 385 KNTLL 389 >gi|326316028|ref|YP_004233700.1| GTP-binding protein Era [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372864|gb|ADX45133.1| GTP-binding protein Era [Acidovorax avenae subsp. avenae ATCC 19860] Length = 349 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 44/118 (37%), Positives = 64/118 (54%), Gaps = 2/118 (1%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N LV +K+++ TR R+ G G F VDT G Sbjct: 59 IAIVGKPNVGKSTLMNALVGQKISITSRKAQTTRHRITGIRTREGTQFVFVDTPGFQTRH 118 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + ++ K +N AI + LILF++++ T D + S K IP ++++NK+D Sbjct: 119 STALNKSLNKTVMGAIGDVDLILFVVEA-GSFTLADAKVLSLF-KPGIPTLLIANKLD 174 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 36/128 (28%), Positives = 65/128 (50%), Gaps = 4/128 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA+VG+PNVGKSTL+N L+G +T ++ TR ++ + DT G + + Sbjct: 59 IAIVGKPNVGKSTLMNALVGQKISITSRKAQTTRHRITGIRTREGTQFVFVDTPGFQ--T 116 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 R + +L + K M ++ + + +++A F D +++ S+F G +L NK D Sbjct: 117 RHSTALNKSLNKTVMGAIGDVDLILFVVEAG-SFTLADAKVL-SLFKPGIPTLLIANKLD 174 Query: 326 MVSDKLNL 333 V + + Sbjct: 175 EVHRRAEI 182 >gi|255972122|ref|ZP_05422708.1| GTP-binding protein Era [Enterococcus faecalis T1] gi|255963140|gb|EET95616.1| GTP-binding protein Era [Enterococcus faecalis T1] Length = 300 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 51/147 (34%), Positives = 79/147 (53%), Gaps = 7/147 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL NR+V +K+A++ + TR+++ G I +DT GI K Sbjct: 10 VAIVGRPNVGKSTLLNRIVGQKIAIMSDKAQTTRNKIQGIYTIPEAQIVFIDTPGIHKPK 69 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +C + M + A+ E LF++ + D I L+ N P+ ++ NK+D + Sbjct: 70 HC-LGDFMVESAYNAMREVDATLFMVSADQKRGKGDDFIIERLKNNNSPVYLIINKID-K 127 Query: 125 IAQRNFYEI---YS--LDFKEIVEISA 146 + + I YS +DFKEI+ ISA Sbjct: 128 VHPDDLLSIIEDYSKQMDFKEIIPISA 154 Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 49/167 (29%), Positives = 83/167 (49%), Gaps = 9/167 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VGRPNVGKSTL+NR++G + ++ TR+ + + I DT G+ KP Sbjct: 10 VAIVGRPNVGKSTLLNRIVGQKIAIMSDKAQTTRNKIQGIYTIPEAQIVFIDTPGIHKPK 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L V+ + ++R + T+ ++ A K D I++ + N V L +NK D Sbjct: 70 H---CLGDFMVESAYNAMREVDATLFMVSADQKRGKGDDFIIERLKNNNSPVYLIINKID 126 Query: 326 MV--SDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVS 370 V D L++++D + + +I I I+ G E L D++V Sbjct: 127 KVHPDDLLSIIEDYSKQM--DFKEI--IPISATEGNNFEHLMDVLVE 169 >gi|68074847|ref|XP_679340.1| hypothetical protein [Plasmodium berghei strain ANKA] gi|56500062|emb|CAH98333.1| conserved hypothetical protein [Plasmodium berghei] Length = 786 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 72/288 (25%), Positives = 138/288 (47%), Gaps = 23/288 (7%) Query: 190 TSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRL-------LTGSQSGITRDSV 242 ++E KS +N +++ ++G N GK+TLI +L N + L G + + + Sbjct: 495 STEYKS--ENKESEIKVCILGEKNCGKTTLIETVLKKNIINENDIYELFGKKRKYVNEDM 552 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRI-TESLEQKTVKKSMQSVRTCETTIVLLDA---TIP 298 SI + KN I I DT ++K + E L + ++R + I + +A I Sbjct: 553 SILY--KNQKITILDTCSLKKQHKFRNEDLFYDEENRVYNNIRKSDICIYIKEAKDNNIC 610 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDM-VSDKLNLLQDLRTKAIKNLPQ-IGDIYINTI 356 K D +++ + ++ ++K D+ V+D ++ R++ +K++ DI + + Sbjct: 611 LNKDDKKMLFYLLKEKKNIIFIVSKIDLIVTD----YENKRSEFLKSITNTFSDIPVLFL 666 Query: 357 SGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWL-QKTQLQNPPPTIFNRYNRLKYITQ 415 + ++ L+ + INK I+TS LN +L Q T+L P P + + K+I Q Sbjct: 667 NNNNDSHVNALLKLITYINKRNNITISTSTLNLFLIQFTKLF-PIPWLKKQKCNFKFIKQ 725 Query: 416 IQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSS 463 I+ +P +FLIF IP +Y + +L+ F L + I+ F+++ Sbjct: 726 IRQNPITFLIFTNLYKNIPNNYLTFFKKKLKDQFDLKYVNIQFVFKTT 773 >gi|67464182|pdb|1X18|X Chain X, Contact Sites Of Era Gtpase On The Thermus Thermophilus 30s Subunit Length = 292 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 51/176 (28%), Positives = 88/176 (50%), Gaps = 6/176 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N+L+ +K+++ TR R+ G VDT G+ + Sbjct: 8 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN +I + L++F+++ TP D + + LR+ P+I+ NK+D Sbjct: 68 KRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNV 126 Query: 125 IAQRNF-----YEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 + + + ++F +IV ISAE L + +++ K + + P + I Sbjct: 127 QEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPEATHHFPEDYI 182 Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 52/167 (31%), Positives = 83/167 (49%), Gaps = 9/167 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS-VSISWNWKNHPIEIFDTAGMRKP 264 IA+VGRPNVGKSTL+N+LLG +T ++ TR V I I + DT G+ Sbjct: 8 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYV-DTPGLHME 66 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 + ++ + K + S+ E I +++ T + D +++ + V+LA+NK Sbjct: 67 EK--RAINRLMNKAASSSIGDVELVIFVVEGT-RWTPDDEMVLNKLREGKAPVILAVNKV 123 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSV 371 D V +K +LL L+ A Q+ + I IS TG +D + V Sbjct: 124 DNVQEKADLLPHLQFLA----SQMNFLDIVPISAETGLNVDTIAAIV 166 >gi|154249358|ref|YP_001410183.1| GTP-binding protein Era [Fervidobacterium nodosum Rt17-B1] gi|154153294|gb|ABS60526.1| GTP-binding protein Era [Fervidobacterium nodosum Rt17-B1] Length = 301 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 46/168 (27%), Positives = 94/168 (55%), Gaps = 9/168 (5%) Query: 207 AVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSR 266 + VG+PNVGKS++IN ++ ++ + TR+ +++ + + I DT G+ KP Sbjct: 10 SFVGKPNVGKSSIINAIMKKKVVIVSEKPQTTRNRINVIYTTDDFQIVFVDTPGIHKP-- 67 Query: 267 ITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 L + VK ++Q+++ + + +DA FE + I++ V + V+ +NK D+ Sbjct: 68 -LHRLGEYMVKAAVQALKNVDLLLFTVDAKEGFETPEEYIIEYVNQSKTPVIGVINKIDL 126 Query: 327 VS-DKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 V ++++ ++++ K ++NL ++ + T S TGEGLD L+ ++E Sbjct: 127 VDRERIDSIEEIMRKKVENLKEV----VKT-SAVTGEGLDKLLEVIVE 169 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 6/159 (3%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 + VG PNVGKS++ N ++KKK+ +V P TR+R+ + VDT GI + Sbjct: 10 SFVGKPNVGKSSIINAIMKKKVVIVSEKPQTTRNRINVIYTTDDFQIVFVDTPGIHKPLH 69 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 + + M A+ L+LF +D+K G + I ++ + P+I V NK+D Sbjct: 70 -RLGEYMVKAAVQALKNVDLLLFTVDAKEGFETPEEYIIEYVNQSKTPVIGVINKIDLVD 128 Query: 126 AQR--NFYEIYS---LDFKEIVEISAEHDLGTSELHSVI 159 +R + EI + KE+V+ SA G +L VI Sbjct: 129 RERIDSIEEIMRKKVENLKEVVKTSAVTGEGLDKLLEVI 167 >gi|297243339|ref|ZP_06927272.1| GTPase [Gardnerella vaginalis AMD] gi|296888586|gb|EFH27325.1| GTPase [Gardnerella vaginalis AMD] Length = 347 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 59/202 (29%), Positives = 99/202 (49%), Gaps = 22/202 (10%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTL N L+ ++A+ + P TR + G + +VDT GI + Sbjct: 42 VAVVGRPNVGKSTLMNALIGTQIAIASSRPETTRKAIRGIVTTDNAQMVLVDTPGIHRPR 101 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLR----KKN--------I 112 + +++ND + ++++ I FL+ + I P D I S LR KK+ + Sbjct: 102 TL-LGQRLNDIVDESLSDVDAIAFLLPADQEIGPGDRRILSRLRSDFAKKDEKGNWTWKV 160 Query: 113 PIIIVSNKMDTRIAQRNFYEIYSL----DFKEIVEISAEHDLGTSELHSVIFKIFKQKYP 168 P+I + K+DT + + DF +IV +SA E+ +V+ Q P Sbjct: 161 PLIGIVTKIDTLSRSELVEHLLQIQQFADFTDIVPVSALERDNVDEVKNVLI----QNLP 216 Query: 169 NHPLEMIENNKRNEESPKENIT 190 P +M ++ +EESP+ I+ Sbjct: 217 EGP-QMYPADQLSEESPESMIS 237 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 41/78 (52%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +AVVGRPNVGKSTL+N L+G + S+ TR ++ N + + DT G+ +P Sbjct: 42 VAVVGRPNVGKSTLMNALIGTQIAIASSRPETTRKAIRGIVTTDNAQMVLVDTPGIHRPR 101 Query: 266 RITESLEQKTVKKSMQSV 283 + V +S+ V Sbjct: 102 TLLGQRLNDIVDESLSDV 119 >gi|122701343|emb|CAL88061.1| GTPase [Helicobacter pylori] Length = 170 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 52/161 (32%), Positives = 83/161 (51%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKVAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISALIDAIL 163 Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKVAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|19703358|ref|NP_602920.1| tRNA modification GTPase TrmE [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|25009491|sp|Q8RHA2|MNME_FUSNN RecName: Full=tRNA modification GTPase mnmE gi|19713420|gb|AAL94219.1| Thiophene and furan oxidation protein THDF [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 455 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 86/156 (55%), Gaps = 7/156 (4%) Query: 171 PLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLL 230 P ++EN K+ K+ ++S K + I ++ A++G+PNVGKS+++N LL +R + Sbjct: 189 PENLVENLKKASAEIKDLVSSYDKGKI--IKDGIKTAIIGKPNVGKSSILNSLLREDRAI 246 Query: 231 TGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTI 290 G TRD + N P+ + DTAG+R I E++ V+KS + + + + + Sbjct: 247 VTHIPGTTRDIIEEVININGIPLLLVDTAGIRNTDDIVENI---GVEKSKELINSADLIL 303 Query: 291 VLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 ++D + +++D RI D + NT V+ LNK D+ Sbjct: 304 YVIDTSREIDEEDFRIYD-IINT-DKVIGILNKIDI 337 Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 57/159 (35%), Positives = 83/159 (52%), Gaps = 12/159 (7%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS++ N L+++ A+V + PG TRD + ING+ +VDTAGI + + Sbjct: 223 AIIGKPNVGKSSILNSLLREDRAIVTHIPGTTRDIIEEVININGIPLLLVDTAGIRNTDD 282 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 + EL IN A LIL++ID+ I D I + +I + NK+D + Sbjct: 283 IVENIGVEKSKEL-INSADLILYVIDTSREIDEEDFRIYDIINTD--KVIGILNKIDIK- 338 Query: 126 AQRNFYEIYSLDFKEI---VEISAEHDLGTSELHSVIFK 161 EI F +I +EISA LG L + I+K Sbjct: 339 -----KEINLSKFPKIEKWIEISALSKLGIDNLENEIYK 372 >gi|332983463|ref|YP_004464904.1| tRNA modification GTPase trmE [Mahella australiensis 50-1 BON] gi|332701141|gb|AEE98082.1| tRNA modification GTPase trmE [Mahella australiensis 50-1 BON] Length = 460 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 45/117 (38%), Positives = 67/117 (57%), Gaps = 3/117 (2%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+K A+V + PG TRD + +NG+ NI+DTAGI + + Sbjct: 226 AIIGRPNVGKSSLLNALLKADRAIVTDIPGTTRDIIEDYVNVNGIALNIIDTAGIREAAD 285 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 I + ++T + A L++F++D + D AI S + K I+V NK D Sbjct: 286 -EIERIGIERTRDTVYRADLVIFVLDGSQPLHQDDRAIASLISSKK--AIVVLNKSD 339 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 54/168 (32%), Positives = 92/168 (54%), Gaps = 14/168 (8%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 I + L+ A++GRPNVGKS+L+N LL +R + G TRD + N + I DTA Sbjct: 219 IREGLKTAIIGRPNVGKSSLLNALLKADRAIVTDIPGTTRDIIEDYVNVNGIALNIIDTA 278 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R+ + + +E+ ++++ +V + I +LD + P QD R + S+ ++ A+V+ Sbjct: 279 GIREAA---DEIERIGIERTRDTVYRADLVIFVLDGSQPLH-QDDRAIASLISSKKAIVV 334 Query: 320 ALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDL 367 LNK D+ ++ + A+ LP D + +S + G GLDDL Sbjct: 335 -LNKSDLG----RVVTEAEVNAV--LP---DAPVIEMSLKEGYGLDDL 372 >gi|54293917|ref|YP_126332.1| GTP-binding protein Era [Legionella pneumophila str. Lens] gi|53753749|emb|CAH15207.1| hypothetical protein lpl0973 [Legionella pneumophila str. Lens] Length = 311 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 51/165 (30%), Positives = 81/165 (49%), Gaps = 20/165 (12%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTL NR++++K+++ P TR + G + F VDT GI G Sbjct: 24 IALVGRPNVGKSTLLNRILQQKLSITSRKPQTTRHSILGIRTEDEFQFVYVDTPGIHQGN 83 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD-- 122 +I + MN + + +I FL+D D + + +++ +P I+V NK+D Sbjct: 84 AKAINRMMNKTAISVLRDVDVIAFLVDG-THWKDEDEYVLNLIKQAKVPCILVVNKVDKI 142 Query: 123 ----------TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHS 157 +I+QR Y+ F I+ +SA+ L EL Sbjct: 143 TDKTQLLPWIEQISQR--YQ-----FAAIIPLSAKTGLQVDELEG 180 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 80/166 (48%), Gaps = 15/166 (9%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA+VGRPNVGKSTL+NR+L +T + TR S+ DT G+ + + Sbjct: 24 IALVGRPNVGKSTLLNRILQQKLSITSRKPQTTRHSILGIRTEDEFQFVYVDTPGIHQGN 83 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +++ + K ++ +R + L+D T ++ +D +++ + +L +NK D Sbjct: 84 --AKAINRMMNKTAISVLRDVDVIAFLVDGT-HWKDEDEYVLNLIKQAKVPCILVVNKVD 140 Query: 326 MVSDKLNLLQDLRTKAIKNLPQIGDIY----INTISGRTGEGLDDL 367 ++DK LL + QI Y I +S +TG +D+L Sbjct: 141 KITDKTQLL--------PWIEQISQRYQFAAIIPLSAKTGLQVDEL 178 >gi|122702493|emb|CAL88437.1| GTPase [Helicobacter pylori] Length = 170 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLSRERIAITSDLAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDTLLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISAL 158 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLSRERIAITSDLAGTTRDINKRKIALNGHEVELLDTGGMAKDT 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|167747959|ref|ZP_02420086.1| hypothetical protein ANACAC_02691 [Anaerostipes caccae DSM 14662] gi|167652609|gb|EDR96738.1| hypothetical protein ANACAC_02691 [Anaerostipes caccae DSM 14662] Length = 301 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 61/194 (31%), Positives = 93/194 (47%), Gaps = 15/194 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIV--DTAGIAD 62 + ++G PNVGKSTL N+L+ +K+A+ P TR+R+ Q + IV DT GI Sbjct: 10 VTLIGRPNVGKSTLMNQLIGQKIAITSKKPQTTRNRI--QTVFTDDRGQIVFLDTPGINR 67 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 KN + M E +NE LIL+L++ I + I L K P+I+V NK D Sbjct: 68 AKN-KLGDYMLKVAERTLNEVDLILWLVEPTTFIGGGERYIIEQLGKVKTPVILVINKTD 126 Query: 123 TRIAQRNFYEIYS----LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 T + I + +F EI+ +SA T ++ IFK P P+ E+ Sbjct: 127 TVKDEEILKAITTYKDVCEFAEIIPVSALKGQNTDDVTDSIFKYL----PEGPMFFDEDT 182 Query: 179 KRNEESPKENITSE 192 ++ P+ I +E Sbjct: 183 VTDQ--PERQICAE 194 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 42/168 (25%), Positives = 83/168 (49%), Gaps = 8/168 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 + ++GRPNVGKSTL+N+L+G +T + TR+ + + I DT G+ + Sbjct: 10 VTLIGRPNVGKSTLMNQLIGQKIAITSKKPQTTRNRIQTVFTDDRGQIVFLDTPGI---N 66 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 R L +K + +++ + + L++ T + I++ + V+L +NK D Sbjct: 67 RAKNKLGDYMLKVAERTLNEVDLILWLVEPTTFIGGGERYIIEQLGKVKTPVILVINKTD 126 Query: 326 MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 V D+ +L+ + T K++ + +I +S G+ DD+ S+ + Sbjct: 127 TVKDE-EILKAITT--YKDVCEFAEII--PVSALKGQNTDDVTDSIFK 169 >gi|122702561|emb|CAL88470.1| GTPase [Helicobacter pylori] Length = 170 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 49/154 (31%), Positives = 82/154 (53%), Gaps = 2/154 (1%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + ++G ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALSGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 K+ ++K++ A + LIL+++D K+ + D + + K N +V NK+ Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKSIPSDEDTKLFREVFKINPNCFLVINKI 124 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 D + Y S + IS H+ G S L Sbjct: 125 DNDKEKERAYAFSSFGMPKSFNISVSHNRGISAL 158 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 63/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALSGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D ++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDTKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|117924216|ref|YP_864833.1| GTP-binding protein Era [Magnetococcus sp. MC-1] gi|117607972|gb|ABK43427.1| GTP-binding protein Era [Magnetococcus sp. MC-1] Length = 303 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 46/148 (31%), Positives = 75/148 (50%), Gaps = 7/148 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PN+GKST NR++ +K+A+V P TR R+ G + +DT GI Sbjct: 10 VAIVGRPNMGKSTFLNRVMGQKLAIVSPKPQTTRTRVLGALNRDNCQIVFLDTPGIHKAG 69 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + M + E +L+ +D++ G+T D I L + PI ++ NK+D + Sbjct: 70 KNLLNRAMVQTAMQSCQEVDAVLYFVDAQRGVTEGDLEIVQRLPRGEAPIYLIINKVD-Q 128 Query: 125 IAQRNFYEIYS------LDFKEIVEISA 146 I Q + + + L F E++ ISA Sbjct: 129 IPQESLLPLLAKAGESGLPFDEVIPISA 156 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 73/153 (47%), Gaps = 3/153 (1%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VGRPN+GKST +NR++G + + TR V + N N I DT G+ K Sbjct: 10 VAIVGRPNMGKSTFLNRVMGQKLAIVSPKPQTTRTRVLGALNRDNCQIVFLDTPGIHKAG 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + L + V+ +MQS + + + +DA + DL IV + + L +NK D Sbjct: 70 K--NLLNRAMVQTAMQSCQEVDAVLYFVDAQRGVTEGDLEIVQRLPRGEAPIYLIINKVD 127 Query: 326 MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISG 358 + + +LL L LP I I+ + G Sbjct: 128 QIPQE-SLLPLLAKAGESGLPFDEVIPISALEG 159 >gi|296328796|ref|ZP_06871310.1| tRNA modification GTPase TrmE [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296154131|gb|EFG94935.1| tRNA modification GTPase TrmE [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 455 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 86/156 (55%), Gaps = 7/156 (4%) Query: 171 PLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLL 230 P ++EN K+ K+ ++S K + I ++ A++G+PNVGKS+++N LL +R + Sbjct: 189 PENLVENLKKASAEIKDLVSSYDKGKI--IKDGIKTAIIGKPNVGKSSILNSLLREDRAI 246 Query: 231 TGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTI 290 G TRD + N P+ + DTAG+R I E++ V+KS + + + + + Sbjct: 247 VTHIPGTTRDIIEEVININGIPLLLVDTAGIRNTDDIVENI---GVEKSKELINSADLIL 303 Query: 291 VLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 ++D + +++D RI D + NT V+ LNK D+ Sbjct: 304 YVIDTSREIDEEDFRIYD-IINT-DKVIGILNKIDI 337 Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 57/159 (35%), Positives = 83/159 (52%), Gaps = 12/159 (7%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS++ N L+++ A+V + PG TRD + ING+ +VDTAGI + + Sbjct: 223 AIIGKPNVGKSSILNSLLREDRAIVTHIPGTTRDIIEEVININGIPLLLVDTAGIRNTDD 282 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 + EL IN A LIL++ID+ I D I + +I + NK+D + Sbjct: 283 IVENIGVEKSKEL-INSADLILYVIDTSREIDEEDFRIYDIINTD--KVIGILNKIDIK- 338 Query: 126 AQRNFYEIYSLDFKEI---VEISAEHDLGTSELHSVIFK 161 EI F +I +EISA LG L + I+K Sbjct: 339 -----KEINLSKFPKIEKWIEISALSKLGIDNLENEIYK 372 >gi|122701507|emb|CAL88143.1| GTPase [Helicobacter pylori] Length = 170 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 52/161 (32%), Positives = 83/161 (51%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +N ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNDHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPNDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 84/172 (48%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD +H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNDHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIP-NDEDLKLFREVFKTNPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D ++S L +N+ Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGISALIDAILSALNLNQ 170 >gi|148360408|ref|YP_001251615.1| GTP-binding protein Era [Legionella pneumophila str. Corby] gi|148282181|gb|ABQ56269.1| GTP-binding protein Era [Legionella pneumophila str. Corby] Length = 311 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 51/165 (30%), Positives = 81/165 (49%), Gaps = 20/165 (12%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTL NR++++K+++ P TR + G + F VDT GI G Sbjct: 24 IALVGRPNVGKSTLLNRILQQKLSITSRKPQTTRHSILGIRTEDEFQFVYVDTPGIHQGN 83 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD-- 122 +I + MN + + +I FL+D D + + +++ +P I+V NK+D Sbjct: 84 AKAINRMMNKTAISVLRDVDVIAFLVDG-THWKDEDEYVLNLIKQAKVPCILVVNKVDKI 142 Query: 123 ----------TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHS 157 +I+QR Y+ F I+ +SA+ L EL Sbjct: 143 TDKTQLLPWIEQISQR--YQ-----FAAIIPLSAKTGLQVDELEG 180 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 80/166 (48%), Gaps = 15/166 (9%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA+VGRPNVGKSTL+NR+L +T + TR S+ DT G+ + + Sbjct: 24 IALVGRPNVGKSTLLNRILQQKLSITSRKPQTTRHSILGIRTEDEFQFVYVDTPGIHQGN 83 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +++ + K ++ +R + L+D T ++ +D +++ + +L +NK D Sbjct: 84 --AKAINRMMNKTAISVLRDVDVIAFLVDGT-HWKDEDEYVLNLIKQAKVPCILVVNKVD 140 Query: 326 MVSDKLNLLQDLRTKAIKNLPQIGDIY----INTISGRTGEGLDDL 367 ++DK LL + QI Y I +S +TG +D+L Sbjct: 141 KITDKTQLL--------PWIEQISQRYQFAAIIPLSAKTGLQVDEL 178 >gi|51598440|ref|YP_072628.1| tRNA modification GTPase TrmE [Borrelia garinii PBi] gi|81610174|sp|Q662I5|MNME_BORGA RecName: Full=tRNA modification GTPase mnmE gi|51573011|gb|AAU07036.1| thiophene and furan oxidation protein [Borrelia garinii PBi] Length = 464 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 41/122 (33%), Positives = 72/122 (59%), Gaps = 2/122 (1%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+ + G+ N GKS+LFN +KK ++V ++PG TRD + ++G++FN+ DTAG+ D Sbjct: 224 TLVLAGSVNAGKSSLFNMFLKKDRSIVSSYPGTTRDYIEATFELDGILFNLFDTAGLKDA 283 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 N + + +++ I EA L++++ID + + P + + K N I+ V NK+D Sbjct: 284 DNF-VERLGIEKSNSLIKEASLVIYVIDVSSNL-PREDFLFIDSNKSNSKILFVLNKIDL 341 Query: 124 RI 125 I Sbjct: 342 NI 343 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 50/187 (26%), Positives = 85/187 (45%), Gaps = 19/187 (10%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 + I + + + G N GKS+L N L +R + S G TRD + ++ +FD Sbjct: 217 EKIDHGVTLVLAGSVNAGKSSLFNMFLKKDRSIVSSYPGTTRDYIEATFELDGILFNLFD 276 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG++ E L ++KS ++ I ++D + ++D +DS + + Sbjct: 277 TAGLKDADNFVERL---GIEKSNSLIKEASLVIYVIDVSSNLPREDFLFIDSN-KSNSKI 332 Query: 318 VLALNKWDMVSDK----------LNLLQDLRTKAIKNLPQIGDIY--INTISG--RTGEG 363 + LNK D+ +K LN +L + KNL I +Y I T+ R G Sbjct: 333 LFVLNKIDLNINKSTEEFVRSSVLN-SSNLIMISTKNLEGIDILYDKIKTLISYERVEIG 391 Query: 364 LDDLMVS 370 LDD+++S Sbjct: 392 LDDIIIS 398 >gi|197285742|ref|YP_002151614.1| GTP-binding protein Era [Proteus mirabilis HI4320] gi|227356256|ref|ZP_03840645.1| GTP-binding protein [Proteus mirabilis ATCC 29906] gi|194683229|emb|CAR43911.1| GTP-binding protein [Proteus mirabilis HI4320] gi|227163720|gb|EEI48636.1| GTP-binding protein [Proteus mirabilis ATCC 29906] Length = 302 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 49/178 (27%), Positives = 88/178 (49%), Gaps = 6/178 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N+L+ +K+++ P TR R+ G VDT G+ + Sbjct: 11 IAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGIDTDGAYQAIYVDTPGLHIEE 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD-- 122 +I + MN +I + L++F+++ TP D + + L+ P+++ NK+D Sbjct: 71 KRAINRLMNRAASSSIGDVELVIFVVEG-TNWTPDDEMVLNKLKSLRCPVLLAINKVDNV 129 Query: 123 ---TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 T++ + +DF ++V ISAE + + ++ + + P + I + Sbjct: 130 TDKTKLLPHIGFLSQQMDFLDVVPISAEKGMNVDTIAKIVRNCLPEAIHHFPEDYITD 187 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 44/131 (33%), Positives = 68/131 (51%), Gaps = 7/131 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV-SISWNWKNHPIEIFDTAGMR-K 263 IA+VGRPNVGKSTL+N+LLG +T + TR + I + I + DT G+ + Sbjct: 11 IAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGIDTDGAYQAIYV-DTPGLHIE 69 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 R L + S+ V E I +++ T + D +++ + + V+LA+NK Sbjct: 70 EKRAINRLMNRAASSSIGDV---ELVIFVVEGT-NWTPDDEMVLNKLKSLRCPVLLAINK 125 Query: 324 WDMVSDKLNLL 334 D V+DK LL Sbjct: 126 VDNVTDKTKLL 136 >gi|253689439|ref|YP_003018629.1| GTP-binding protein Era [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251756017|gb|ACT14093.1| GTP-binding protein Era [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 301 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 52/176 (29%), Positives = 88/176 (50%), Gaps = 6/176 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N+L+ +K+++ P TR R+ G VDT G+ + Sbjct: 11 IAIVGRPNVGKSTLLNQLLGQKISITSRKPQTTRHRIMGIHTEGPYQAIYVDTPGLHIEE 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD-- 122 +I + MN +I + LI+F+++ D + + LR + +P+++ NK+D Sbjct: 71 KRAINRLMNRAASSSIGDVELIIFVVEG-THWNDDDEMVLNKLRDQKLPVLLAINKVDNV 129 Query: 123 ---TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 T++ + +DF ++V ISAE + S++ K Q + P + I Sbjct: 130 TDKTKLLPHIQFLSQQMDFLDVVPISAEKGTNVDTIASIVRKHLPQATHHFPEDYI 185 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 42/130 (32%), Positives = 65/130 (50%), Gaps = 5/130 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMR-KP 264 IA+VGRPNVGKSTL+N+LLG +T + TR + + DT G+ + Sbjct: 11 IAIVGRPNVGKSTLLNQLLGQKISITSRKPQTTRHRIMGIHTEGPYQAIYVDTPGLHIEE 70 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 R L + S+ V E I +++ T + D +++ + + V+LA+NK Sbjct: 71 KRAINRLMNRAASSSIGDV---ELIIFVVEGT-HWNDDDEMVLNKLRDQKLPVLLAINKV 126 Query: 325 DMVSDKLNLL 334 D V+DK LL Sbjct: 127 DNVTDKTKLL 136 >gi|229817680|ref|ZP_04447962.1| hypothetical protein BIFANG_02951 [Bifidobacterium angulatum DSM 20098] gi|229785469|gb|EEP21583.1| hypothetical protein BIFANG_02951 [Bifidobacterium angulatum DSM 20098] Length = 334 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 57/203 (28%), Positives = 100/203 (49%), Gaps = 24/203 (11%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTL N L+ ++A+ + P TR + G + +VDT GI + Sbjct: 29 VAVVGRPNVGKSTLVNALIGTQIAIASSRPETTRKAIRGVLTTDNAQLVLVDTPGIHRPR 88 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLR------------KKNI 112 + +++ND + ++++ ++ FL+ I P D I S LR K ++ Sbjct: 89 TL-LGQRLNDIVDESLSDVDVVAFLLPGDQEIGPGDKRIMSRLRANFATKREDGTFKWHV 147 Query: 113 PIIIVSNKMDTRIAQRNFYEIYSL----DFKEIVEISA-EHDLGTSELHSVIFKIFKQKY 167 P+I + K+D ++ ++ + DF +IV +SA +HD E+ SV+ + Sbjct: 148 PLIAIVTKIDELSREQLIAKLIEVNEFADFADIVPVSALKHD-NLDEVRSVLIDHTPEGP 206 Query: 168 PNHPLEMIENNKRNEESPKENIT 190 +P E + +EE P+E I Sbjct: 207 QMYPAEQL-----SEERPEETIA 224 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 3/92 (3%) Query: 195 SSVKNISKPLR---IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNH 251 +S K S+P R +AVVGRPNVGKSTL+N L+G + S+ TR ++ N Sbjct: 15 ASAKLASEPYRSGFVAVVGRPNVGKSTLVNALIGTQIAIASSRPETTRKAIRGVLTTDNA 74 Query: 252 PIEIFDTAGMRKPSRITESLEQKTVKKSMQSV 283 + + DT G+ +P + V +S+ V Sbjct: 75 QLVLVDTPGIHRPRTLLGQRLNDIVDESLSDV 106 >gi|212710662|ref|ZP_03318790.1| hypothetical protein PROVALCAL_01728 [Providencia alcalifaciens DSM 30120] gi|212686743|gb|EEB46271.1| hypothetical protein PROVALCAL_01728 [Providencia alcalifaciens DSM 30120] Length = 302 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 52/170 (30%), Positives = 84/170 (49%), Gaps = 10/170 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N+L+ +K+++ P TR R+ G + VDT G+ + Sbjct: 11 VAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGIHTEDNYQIIYVDTPGLHIEE 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN +I + L++F+++ TP D + + L P+I+ NK+D Sbjct: 71 KRAINRLMNRAASSSIGDVELVIFVVEG-THWTPDDEMVLNKLSSLRCPVILAINKIDNV 129 Query: 125 IAQRNFYEIYS-----LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPN 169 + + + ++F ++V ISAE G I KI KQ P Sbjct: 130 VDKTSLLPHIGMISQKMNFLDVVPISAEKGTGV----DTIAKIVKQHIPE 175 Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 52/168 (30%), Positives = 78/168 (46%), Gaps = 23/168 (13%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMR-KP 264 +A+VGRPNVGKSTL+N+LLG +T + TR + N+ I DT G+ + Sbjct: 11 VAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGIHTEDNYQIIYVDTPGLHIEE 70 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 R L + S+ V E I +++ T + D +++ + + V+LA+NK Sbjct: 71 KRAINRLMNRAASSSIGDV---ELVIFVVEGT-HWTPDDEMVLNKLSSLRCPVILAINKI 126 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIY-------INTISGRTGEGLD 365 D V DK +L LP IG I + IS G G+D Sbjct: 127 DNVVDKTSL-----------LPHIGMISQKMNFLDVVPISAEKGTGVD 163 >gi|89895851|ref|YP_519338.1| hypothetical protein DSY3105 [Desulfitobacterium hafniense Y51] gi|89335299|dbj|BAE84894.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 303 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 52/165 (31%), Positives = 85/165 (51%), Gaps = 12/165 (7%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 + VVGRPN GKSTL+N+LLG L+ + TR+ + + I DT G+ KP Sbjct: 15 VTVVGRPNAGKSTLLNQLLGQKILIMSDKPQTTRNKIHCILTEERGQIVFLDTPGIHKPK 74 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + V +++S+R + + ++D T F + I++++ + +L LNK D Sbjct: 75 H---KLGEFMVDSALESLREVDLILYMVDTTAEFGAGEEYILENLKHVKTPCILLLNKID 131 Query: 326 MVS-DKLNLLQDLRTKAIKNLPQIGD-IYINTISGRTGEGLDDLM 368 ++ DKL K IK+ + D + I IS +TGE D+L+ Sbjct: 132 LIEKDKL-------LKLIKDYSALKDFLAILPISAKTGENKDELL 169 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 68/233 (29%), Positives = 115/233 (49%), Gaps = 31/233 (13%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLY-------GQAIINGVIFNIVDT 57 + +VG PN GKSTL N+L+ +K+ ++ + P TR++++ GQ ++F +DT Sbjct: 15 VTVVGRPNAGKSTLLNQLLGQKILIMSDKPQTTRNKIHCILTEERGQ-----IVF--LDT 67 Query: 58 AGIADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIV 117 GI K+ + + M D ++ E LIL+++D+ A + I L+ P I++ Sbjct: 68 PGIHKPKH-KLGEFMVDSALESLREVDLILYMVDTTAEFGAGEEYILENLKHVKTPCILL 126 Query: 118 SNKMDTRIAQRNFYEI---YSL--DFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPL 172 NK+D I + ++ YS DF I+ ISA+ EL +IFK + P P+ Sbjct: 127 LNKIDL-IEKDKLLKLIKDYSALKDFLAILPISAKTGENKDELLKLIFK----EMPQGPM 181 Query: 173 EMIENNKRNEESPKENITSE-GKSSVKNISK---PLRIAVVGRPNVGKSTLIN 221 E+ ++ P+ I +E + V +++ P IAVV K TLI Sbjct: 182 YYPEDEVTDQ--PERFIMAELVREKVLQLTRDEVPHSIAVVVESVEEKKTLIK 232 >gi|326804314|ref|YP_004322132.1| tRNA modification GTPase TrmE [Aerococcus urinae ACS-120-V-Col10a] gi|326650573|gb|AEA00756.1| tRNA modification GTPase TrmE [Aerococcus urinae ACS-120-V-Col10a] Length = 466 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 47/158 (29%), Positives = 86/158 (54%), Gaps = 3/158 (1%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+++ A+V + G TRD + + GV +VDTAGI D ++ Sbjct: 232 AIIGRPNVGKSSLLNHLLREDKAIVTDIEGTTRDTIEEYVNLRGVPLKLVDTAGIRDTED 291 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 + K +++ A+ EA L+L +++ + D + + + N I++ +D + Sbjct: 292 V-VEKIGVERSRKAMEEADLVLLILNQSEPLQAMDRELLTMTKDSNRIILLNKTDLDPAL 350 Query: 126 AQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 + + + Y+ D +EI++ S D G +L I ++F Sbjct: 351 SLDDLAD-YA-DKEEIIKTSITQDQGVDDLEERISQLF 386 Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 34/123 (27%), Positives = 70/123 (56%), Gaps = 5/123 (4%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 + A++GRPNVGKS+L+N LL ++ + G TRD++ N + P+++ DTAG+R Sbjct: 229 IETAIIGRPNVGKSSLLNHLLREDKAIVTDIEGTTRDTIEEYVNLRGVPLKLVDTAGIRD 288 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 + E + V++S +++ + +++L+ + P + D ++ ++ ++ LNK Sbjct: 289 TEDVVEKI---GVERSRKAMEEADLVLLILNQSEPLQAMDRELLTMTKDSNR--IILLNK 343 Query: 324 WDM 326 D+ Sbjct: 344 TDL 346 >gi|306818072|ref|ZP_07451803.1| GTP-binding protein Era [Mobiluncus mulieris ATCC 35239] gi|304649036|gb|EFM46330.1| GTP-binding protein Era [Mobiluncus mulieris ATCC 35239] Length = 303 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 49/147 (33%), Positives = 75/147 (51%), Gaps = 6/147 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A++G PNVGKSTL N +V +K+A+ P TR G G +VDT GI + Sbjct: 19 VAVLGRPNVGKSTLINEMVGRKIAITSARPETTRHVARGIVHRPGFQLVLVDTPGIHRPR 78 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITS-FLRKKNIPIIIVSNKMDT 123 + +++ND+ E A + L++F + + I P D I LR IP + V K D Sbjct: 79 TL-LGQRLNDRVEEAQADVDLLVFCVPADQEIGPGDRRIVEKQLRANRIPALAVVTKTDV 137 Query: 124 RIAQRNFYEIYSL----DFKEIVEISA 146 + ++ +L DF+EIV +SA Sbjct: 138 ATPNQIAAQLLALNELYDFREIVPVSA 164 Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust. Identities = 44/175 (25%), Positives = 82/175 (46%), Gaps = 14/175 (8%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +AV+GRPNVGKSTLIN ++G +T ++ TR + + + DT G+ +P Sbjct: 19 VAVLGRPNVGKSTLINEMVGRKIAITSARPETTRHVARGIVHRPGFQLVLVDTPGIHRPR 78 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ----DLRIVDSVFNTGHAVVLA- 320 + L Q+ + V + + LL +P +++ D RIV+ LA Sbjct: 79 TL---LGQRLNDR----VEEAQADVDLLVFCVPADQEIGPGDRRIVEKQLRANRIPALAV 131 Query: 321 LNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEIN 375 + K D+ + Q L + + +I + ++ + G+ E L DL+ ++ ++ Sbjct: 132 VTKTDVATPNQIAAQLLALNELYDFREI--VPVSAVQGKQVELLIDLLGGLMPLS 184 >gi|161833721|ref|YP_001597917.1| tRNA modification GTPase TrmE [Candidatus Sulcia muelleri GWSS] gi|293977831|ref|YP_003543261.1| tRNA modification GTPase TrmE [Candidatus Sulcia muelleri DMIN] gi|205415809|sp|A8Z5X0|MNME_SULMW RecName: Full=tRNA modification GTPase mnmE gi|152206211|gb|ABS30521.1| tRNA modification GTPase TrmE [Candidatus Sulcia muelleri GWSS] gi|292667762|gb|ADE35397.1| tRNA modification GTPase TrmE [Candidatus Sulcia muelleri DMIN] Length = 454 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 38/88 (43%), Positives = 57/88 (64%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 +++I+G PNVGKSTLFN+L+K + ++V N G TR+ + IING+ F +DTAGI + Sbjct: 221 SVSIIGCPNVGKSTLFNKLLKYERSIVSNIAGTTRNYIEDSLIINGIKFRFIDTAGINNN 280 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLID 91 I K +T IN++ LIL++ D Sbjct: 281 TKDYIEKLGIKKTYSKINKSDLILYVFD 308 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 26/91 (28%), Positives = 49/91 (53%), Gaps = 2/91 (2%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 + ++++G PNVGKSTL N+LL Y R + + +G TR+ + S DTAG+ Sbjct: 220 ISVSIIGCPNVGKSTLFNKLLKYERSIVSNIAGTTRNYIEDSLIINGIKFRFIDTAGINN 279 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLD 294 ++ + +E+ +KK+ + + + + D Sbjct: 280 NTK--DYIEKLGIKKTYSKINKSDLILYVFD 308 >gi|222056913|ref|YP_002539275.1| tRNA modification GTPase TrmE [Geobacter sp. FRC-32] gi|221566202|gb|ACM22174.1| tRNA modification GTPase TrmE [Geobacter sp. FRC-32] Length = 455 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 52/170 (30%), Positives = 86/170 (50%), Gaps = 14/170 (8%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 ++ I G PNVGKS+L N L+++K A+V PG TRD + Q ING+ ++DTAGI + Sbjct: 222 SVVIAGKPNVGKSSLLNALLQEKRAIVTAIPGTTRDLIEEQMTINGLPVKLLDTAGIRES 281 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + + K+ + ++ A L+LF++D+ + + D +I R ++V NK D Sbjct: 282 DD-HVEKEGVKLSLEKLSSADLVLFVVDASSSFSAEDQSILE--RLSGFSFMVVKNKSDI 338 Query: 124 RIAQRNFYEIYSLDFK---EIVEISAEHDLGTSELHSVIFKIFKQKYPNH 170 + Y L F+ ++ +S G +L IF F P+H Sbjct: 339 DGS-------YVLPFEPELPVLSLSTHTGHGLVDLQQAIFDFFIH-LPDH 380 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 55/220 (25%), Positives = 109/220 (49%), Gaps = 29/220 (13%) Query: 163 FKQKYPNHPLEMIENNKRNEESPKENITSE---------GKSSVKNISKPLRIAVVGRPN 213 F + + + P E I+ + + E +NI S G S + I + + + + G+PN Sbjct: 173 FLEAFIDFPEEDIDVSAK--EHIGQNIDSSLLMLDELLSGFSEGRIIREGVSVVIAGKPN 230 Query: 214 VGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQ 273 VGKS+L+N LL R + + G TRD + P+++ DTAG+R+ + +E+ Sbjct: 231 VGKSSLLNALLQEKRAIVTAIPGTTRDLIEEQMTINGLPVKLLDTAGIRESD---DHVEK 287 Query: 274 KTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNL 333 + VK S++ + + + + ++DA+ F +D I++ + +G + ++ NK D+ + Sbjct: 288 EGVKLSLEKLSSADLVLFVVDASSSFSAEDQSILERL--SGFSFMVVKNKSDIDGSYV-- 343 Query: 334 LQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 LP ++ + ++S TG GL DL ++ + Sbjct: 344 -----------LPFEPELPVLSLSTHTGHGLVDLQQAIFD 372 >gi|121595569|ref|YP_987465.1| GTP-binding protein Era [Acidovorax sp. JS42] gi|222111790|ref|YP_002554054.1| gtp-binding protein era [Acidovorax ebreus TPSY] gi|120607649|gb|ABM43389.1| GTP-binding protein Era [Acidovorax sp. JS42] gi|221731234|gb|ACM34054.1| GTP-binding protein Era [Acidovorax ebreus TPSY] Length = 337 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 57/181 (31%), Positives = 87/181 (48%), Gaps = 15/181 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N LV +K+++ TR R+ G F VDT G Sbjct: 47 IAIVGKPNVGKSTLMNALVGQKISITSRKAQTTRHRITGIRTRGATQFVFVDTPGFQTRH 106 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + ++ K +N AI + LILF++++ T D + S K IP ++++NK+DT Sbjct: 107 STALNKSLNKTVMGAIGDVDLILFVVEA-GSFTLADAKVLSLF-KPGIPTLLIANKLDT- 163 Query: 125 IAQRNFYEIYSLD------FKEIVEISAEHDLGTSELHSVIFKIFKQKY-PNHPLEMIEN 177 + +R + D F E V +SA++ L+ + +KY P P E+ Sbjct: 164 VHRRAEIAPWLRDMQGRHPFAEFVPMSAKNKGDIERLYGIC-----EKYLPEQPWWYAED 218 Query: 178 N 178 Sbjct: 219 E 219 Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust. Identities = 38/133 (28%), Positives = 66/133 (49%), Gaps = 4/133 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA+VG+PNVGKSTL+N L+G +T ++ TR ++ DT G + + Sbjct: 47 IAIVGKPNVGKSTLMNALVGQKISITSRKAQTTRHRITGIRTRGATQFVFVDTPGFQ--T 104 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 R + +L + K M ++ + + +++A F D +++ S+F G +L NK D Sbjct: 105 RHSTALNKSLNKTVMGAIGDVDLILFVVEAG-SFTLADAKVL-SLFKPGIPTLLIANKLD 162 Query: 326 MVSDKLNLLQDLR 338 V + + LR Sbjct: 163 TVHRRAEIAPWLR 175 >gi|18075577|emb|CAD11184.1| GTP-binding protein [Helicobacter pylori] gi|122702815|emb|CAL88597.1| GTPase [Helicobacter pylori] Length = 170 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 82/156 (52%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +N ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNDHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGAPKSFNISVSHNRGISAL 158 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 66/121 (54%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD +H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNDHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|24113908|ref|NP_708418.1| GTP-binding protein Era [Shigella flexneri 2a str. 301] gi|30063968|ref|NP_838139.1| GTP-binding protein Era [Shigella flexneri 2a str. 2457T] gi|81724270|sp|Q83QI5|ERA_SHIFL RecName: Full=GTPase Era gi|24053009|gb|AAN44125.1| GTP-binding protein [Shigella flexneri 2a str. 301] gi|30042224|gb|AAP17949.1| GTP-binding protein [Shigella flexneri 2a str. 2457T] gi|281601979|gb|ADA74963.1| era-like GTP-binding protein [Shigella flexneri 2002017] gi|313648244|gb|EFS12688.1| GTP-binding protein Era [Shigella flexneri 2a str. 2457T] gi|332753975|gb|EGJ84349.1| GTP-binding protein Era [Shigella flexneri 4343-70] gi|332755807|gb|EGJ86165.1| GTP-binding protein Era [Shigella flexneri 2747-71] gi|332761959|gb|EGJ92232.1| GTP-binding protein Era [Shigella flexneri K-671] gi|332766567|gb|EGJ96772.1| GTP-binding protein Era [Shigella flexneri 2930-71] gi|333000823|gb|EGK20395.1| GTP-binding protein Era [Shigella flexneri K-218] gi|333016830|gb|EGK36156.1| GTP-binding protein Era [Shigella flexneri K-304] Length = 301 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 51/178 (28%), Positives = 89/178 (50%), Gaps = 6/178 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N+L+ +K+++ TR R+ G VDT G+ + Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN +I + L++F+++ TP D + + LR+ P+I+ NK+D Sbjct: 71 KRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNV 129 Query: 125 IAQRNF-----YEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 + + + ++F +IV ISAE L + +++ K + + P + I + Sbjct: 130 QEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPEATHHFPEDYITD 187 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 52/167 (31%), Positives = 83/167 (49%), Gaps = 9/167 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS-VSISWNWKNHPIEIFDTAGMRKP 264 IA+VGRPNVGKSTL+N+LLG +T ++ TR V I I + DT G+ Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYV-DTPGLHME 69 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 + ++ + K + S+ E I +++ T + D +++ + V+LA+NK Sbjct: 70 EK--RAINRLMNKAASSSIGDVELVIFVVEGT-RWTPDDEMVLNKLREGKAPVILAVNKV 126 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSV 371 D V +K +LL L+ A Q+ + I IS TG +D + V Sbjct: 127 DNVQEKADLLPHLQFLA----SQMNFLDIVPISAETGLNVDTIAAIV 169 >gi|237756509|ref|ZP_04585039.1| tRNA modification GTPase TrmE [Sulfurihydrogenibium yellowstonense SS-5] gi|237691325|gb|EEP60403.1| tRNA modification GTPase TrmE [Sulfurihydrogenibium yellowstonense SS-5] Length = 267 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 42/127 (33%), Positives = 75/127 (59%), Gaps = 5/127 (3%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 I + +++A+VGRPNVGKS+L N L+GY R + G TRD + S K+ P+ + DTA Sbjct: 32 IKEGIKLAIVGRPNVGKSSLFNALVGYERAIVSEIQGTTRDFIEESLKIKDIPVILLDTA 91 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R + +E+ ++K+ + + + + ++DA+ F ++D +I D + + H V Sbjct: 92 GLRDTE---DKIEKIGIEKAQEKINEADIILFVIDASSGFTEEDKKIYDKIKDKPHITV- 147 Query: 320 ALNKWDM 326 +NK D+ Sbjct: 148 -VNKSDL 153 Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 57/155 (36%), Positives = 83/155 (53%), Gaps = 7/155 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKS+LFN LV + A+V G TRD + I + ++DTAG+ D + Sbjct: 38 LAIVGRPNVGKSSLFNALVGYERAIVSEIQGTTRDFIEESLKIKDIPVILLDTAGLRDTE 97 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + I K ++ + INEA +ILF+ID+ +G T + + + K+ P I V NK D Sbjct: 98 D-KIEKIGIEKAQEKINEADIILFVIDASSGFT--EEDKKIYDKIKDKPHITVVNKSDLN 154 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVI 159 +F+E Y IV S ++ G EL I Sbjct: 155 NKPIDFFEKYD----NIVYTSVVNNQGIKELEEKI 185 >gi|333000426|gb|EGK20008.1| GTP-binding protein Era [Shigella flexneri VA-6] Length = 301 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 51/178 (28%), Positives = 89/178 (50%), Gaps = 6/178 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N+L+ +K+++ TR R+ G VDT G+ + Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN +I + L++F+++ TP D + + LR+ P+I+ NK+D Sbjct: 71 KRAINRLMNKAASSSIGDVELVIFVVEGTRW-TPDDEMVLNKLREGKAPVILAVNKVDNV 129 Query: 125 IAQRNF-----YEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 + + + ++F +IV ISAE L + +++ K + + P + I + Sbjct: 130 QEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPEATHHFPEDYITD 187 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 52/167 (31%), Positives = 83/167 (49%), Gaps = 9/167 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS-VSISWNWKNHPIEIFDTAGMRKP 264 IA+VGRPNVGKSTL+N+LLG +T ++ TR V I I + DT G+ Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYV-DTPGLHME 69 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 + ++ + K + S+ E I +++ T + D +++ + V+LA+NK Sbjct: 70 EK--RAINRLMNKAASSSIGDVELVIFVVEGT-RWTPDDEMVLNKLREGKAPVILAVNKV 126 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSV 371 D V +K +LL L+ A Q+ + I IS TG +D + V Sbjct: 127 DNVQEKADLLPHLQFLA----SQMNFLDIVPISAETGLNVDTIAAIV 169 >gi|255659827|ref|ZP_05405236.1| tRNA modification GTPase TrmE [Mitsuokella multacida DSM 20544] gi|260847902|gb|EEX67909.1| tRNA modification GTPase TrmE [Mitsuokella multacida DSM 20544] Length = 461 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 55/168 (32%), Positives = 86/168 (51%), Gaps = 13/168 (7%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 L A++G+PNVGKS+L+N LL R + G TRDS+ + P+ I DTAG+R Sbjct: 223 LLTAIIGKPNVGKSSLLNSLLREERAIVTDVPGTTRDSIEEYADVGGIPLRIIDTAGIRA 282 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 + E + V+K+ V+ + L DA+ P + +D I+ V G +L LNK Sbjct: 283 TDDVVERI---GVEKARSYVKEAALILALFDASRPLDSEDEEILKLV--RGRDAILLLNK 337 Query: 324 WDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSV 371 D+ + + L+ K +P I TIS RT +GL++L ++ Sbjct: 338 DDL--QPVVTAEMLQRHVKKEVPVI------TISTRTQDGLENLAKAI 377 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 41/117 (35%), Positives = 66/117 (56%), Gaps = 3/117 (2%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L++++ A+V + PG TRD + A + G+ I+DTAGI + Sbjct: 226 AIIGKPNVGKSSLLNSLLREERAIVTDVPGTTRDSIEEYADVGGIPLRIIDTAGIRATDD 285 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + + ++ + EA LIL L D+ + D I +R ++ I++ NK D Sbjct: 286 V-VERIGVEKARSYVKEAALILALFDASRPLDSEDEEILKLVRGRD--AILLLNKDD 339 >gi|223937602|ref|ZP_03629505.1| tRNA modification GTPase TrmE [bacterium Ellin514] gi|223893765|gb|EEF60223.1| tRNA modification GTPase TrmE [bacterium Ellin514] Length = 457 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 40/136 (29%), Positives = 78/136 (57%), Gaps = 5/136 (3%) Query: 168 PNHPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYN 227 P+ +++I +R E +E + + + + + + +R A++GRPN GKS+L+N+LLG + Sbjct: 190 PDTKVKLIGRLERGLEFMEELLRTSNEGQI--LRRGIRAAIIGRPNAGKSSLLNQLLGRD 247 Query: 228 RLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCE 287 R + G TRD++ + N + PI DTAG+R+ + +E + +++S +++ E Sbjct: 248 RAIVSHIPGTTRDTIEETANVRGLPIVFVDTAGLREAG---DEIEVEGIRRSRETLSKAE 304 Query: 288 TTIVLLDATIPFEKQD 303 + +LDA+ P D Sbjct: 305 FILHVLDASEPLTMAD 320 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 41/118 (34%), Positives = 66/118 (55%), Gaps = 5/118 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PN GKS+L N+L+ + A+V + PG TRD + A + G+ VDTAG+ + + Sbjct: 227 AIIGRPNAGKSSLLNQLLGRDRAIVSHIPGTTRDTIEETANVRGLPIVFVDTAGLREAGD 286 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDH-AITSFLRKKNIPIIIVSNKMD 122 I + ++ +++A IL ++D+ +T D + F KK I+V NKMD Sbjct: 287 -EIEVEGIRRSRETLSKAEFILHVLDASEPLTMADENYLAEFSDKKR---ILVRNKMD 340 >gi|122702483|emb|CAL88432.1| GTPase [Helicobacter pylori] Length = 170 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 52/162 (32%), Positives = 84/162 (51%), Gaps = 6/162 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 K+D + S + IS H+ G S L + + Sbjct: 123 KIDNDKEKERACAFSSFGIPKSFNISVSHNRGISALIDAVLR 164 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|333001659|gb|EGK21226.1| GTP-binding protein Era [Shigella flexneri K-272] gi|333015935|gb|EGK35270.1| GTP-binding protein Era [Shigella flexneri K-227] Length = 301 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 51/178 (28%), Positives = 89/178 (50%), Gaps = 6/178 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N+L+ +K+++ TR R+ G VDT G+ + Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN +I + L++F+++ TP D + + LR+ P+I+ NK+D Sbjct: 71 KRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNV 129 Query: 125 IAQRNF-----YEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 + + + ++F +IV ISAE L + +++ K + + P + I + Sbjct: 130 QEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPEATHHFPEDYITD 187 Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 52/167 (31%), Positives = 83/167 (49%), Gaps = 9/167 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS-VSISWNWKNHPIEIFDTAGMRKP 264 IA+VGRPNVGKSTL+N+LLG +T ++ TR V I I + DT G+ Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYV-DTPGLHME 69 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 + ++ + K + S+ E I +++ T + D +++ + V+LA+NK Sbjct: 70 EK--RAINRLMNKAASSSIGDVELVIFVVEGT-RWTPDDEMVLNKLREGKAPVILAVNKV 126 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSV 371 D V +K +LL L+ A Q+ + I IS TG +D + V Sbjct: 127 DNVQEKADLLPHLQFLA----SQMNFLDIVPISAETGLNVDTIAAIV 169 >gi|110806511|ref|YP_690031.1| GTP-binding protein Era [Shigella flexneri 5 str. 8401] gi|122957275|sp|Q0T1T9|ERA_SHIF8 RecName: Full=GTPase Era gi|110616059|gb|ABF04726.1| GTP-binding protein [Shigella flexneri 5 str. 8401] Length = 301 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 51/178 (28%), Positives = 89/178 (50%), Gaps = 6/178 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N+L+ +K+++ TR R+ G VDT G+ + Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN +I + L++F+++ TP D + + LR+ P+I+ NK+D Sbjct: 71 KRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNV 129 Query: 125 IAQRNF-----YEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 + + + ++F +IV ISAE L + +++ K + + P + I + Sbjct: 130 QEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPEATHHFPEDYITD 187 Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 52/167 (31%), Positives = 83/167 (49%), Gaps = 9/167 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS-VSISWNWKNHPIEIFDTAGMRKP 264 IA+VGRPNVGKSTL+N+LLG +T ++ TR V I I + DT G+ Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYV-DTPGLHME 69 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 + ++ + K + S+ E I +++ T + D +++ + V+LA+NK Sbjct: 70 EK--RAINRLMNKAASSSIGDVELVIFVVEGT-RWTPDDEMVLNKLREGKAPVILAVNKV 126 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSV 371 D V +K +LL L+ A Q+ + I IS TG +D + V Sbjct: 127 DNVQEKADLLPHLQFLA----SQMNFLDIVPISAETGLNVDTIAAIV 169 >gi|312897434|ref|ZP_07756858.1| tRNA modification GTPase TrmE [Megasphaera micronuciformis F0359] gi|310621495|gb|EFQ05031.1| tRNA modification GTPase TrmE [Megasphaera micronuciformis F0359] Length = 459 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 61/211 (28%), Positives = 106/211 (50%), Gaps = 23/211 (10%) Query: 167 YPNHPLE--MIENNKRNEESPKENITSEGKSSVKN--ISKPLRIAVVGRPNVGKSTLINR 222 YP LE ++ + ++ E + K S K I + +A+ G PN GKS+L+N Sbjct: 184 YPEEDLEDIVVHDLEKTMRCMMERMEQMLKDSSKGRIIRDGMTVAIAGAPNAGKSSLLNY 243 Query: 223 LLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQS 282 LL +R + G TRD++ + + P + DTAG+R+ T+++E V K+ Sbjct: 244 LLAEDRAIVTDIPGTTRDALEEWVSIQGIPFRLVDTAGIRET---TDTVEAIGVTKARNY 300 Query: 283 VRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAI 342 + T +T ++L D T PF +D +++SV + A+V L K D L L + + + Sbjct: 301 IETADTVLILKDRTQPFSDEDKALINSVPDGKGAIV--LTKSD-----LKPLLECKDLEV 353 Query: 343 KNLPQIGDIYINTISGRTGEG---LDDLMVS 370 LP + ++S +TG+G L++ +VS Sbjct: 354 YGLP------VFSLSSKTGDGISLLEEYLVS 378 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 30/57 (52%), Positives = 38/57 (66%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 T+AI GAPN GKS+L N L+ + A+V + PG TRD L I G+ F +VDTAGI Sbjct: 226 TVAIAGAPNAGKSSLLNYLLAEDRAIVTDIPGTTRDALEEWVSIQGIPFRLVDTAGI 282 >gi|254558111|ref|YP_003064528.1| tRNA modification GTPase TrmE [Lactobacillus plantarum JDM1] gi|254047038|gb|ACT63831.1| tRNA modification GTPase TrmE [Lactobacillus plantarum JDM1] Length = 463 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 55/207 (26%), Positives = 102/207 (49%), Gaps = 10/207 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+ + A+V + G TRD + + GV +VDTAGI D ++ Sbjct: 228 AIIGRPNVGKSSLLNHLLHEDKAIVTDVAGTTRDVIEEYVNVRGVPLKLVDTAGIRDTED 287 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 + K +++ AI A L+L ++D+ +T D + + +I+ + R+ Sbjct: 288 -KVEKIGVERSRKAIGAADLVLLVLDNSQPLTAEDRELLQETDQSKRIVILNKTDLPARL 346 Query: 126 AQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEESP 185 Q ++ +D +++ +S G ++L I K+F N +E +NN + Sbjct: 347 DQAELAQL--VDLSDVLSMSVLEQSGVTQLEQRIAKMF----FNEGIESSQNNVMVTNAR 400 Query: 186 KENITSEGKSSVKNISKPLRIAVVGRP 212 + ++ K +++++ L V G P Sbjct: 401 HIGLLNQAKQALQDVQTGL---VAGMP 424 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 38/129 (29%), Positives = 73/129 (56%), Gaps = 5/129 (3%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L A++GRPNVGKS+L+N LL ++ + +G TRD + N + P+++ D Sbjct: 219 KVLREGLATAIIGRPNVGKSSLLNHLLHEDKAIVTDVAGTTRDVIEEYVNVRGVPLKLVD 278 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R + +E+ V++S +++ + +++LD + P +D ++ + V Sbjct: 279 TAGIRDTE---DKVEKIGVERSRKAIGAADLVLLVLDNSQPLTAEDRELLQETDQSKRIV 335 Query: 318 VLALNKWDM 326 + LNK D+ Sbjct: 336 I--LNKTDL 342 >gi|16130491|ref|NP_417061.1| membrane-associated, 16S rRNA-binding GTPase [Escherichia coli str. K-12 substr. MG1655] gi|89109372|ref|AP_003152.1| membrane-associated, 16S rRNA-binding GTPase [Escherichia coli str. K-12 substr. W3110] gi|157162045|ref|YP_001459363.1| GTP-binding protein Era [Escherichia coli HS] gi|170019151|ref|YP_001724105.1| GTP-binding protein Era [Escherichia coli ATCC 8739] gi|170082175|ref|YP_001731495.1| membrane-associated, 16S rRNA-binding GTPase [Escherichia coli str. K-12 substr. DH10B] gi|188492753|ref|ZP_03000023.1| GTP-binding protein Era [Escherichia coli 53638] gi|194437653|ref|ZP_03069749.1| GTP-binding protein Era [Escherichia coli 101-1] gi|238901731|ref|YP_002927527.1| membrane-associated, 16S rRNA-binding GTPase [Escherichia coli BW2952] gi|253772535|ref|YP_003035366.1| GTP-binding protein Era [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254162541|ref|YP_003045649.1| GTP-binding protein Era [Escherichia coli B str. REL606] gi|256021748|ref|ZP_05435613.1| GTP-binding protein Era [Escherichia sp. 4_1_40B] gi|293415835|ref|ZP_06658478.1| GTP-binding protein Era [Escherichia coli B185] gi|297516305|ref|ZP_06934691.1| GTP-binding protein Era [Escherichia coli OP50] gi|300904250|ref|ZP_07122109.1| GTP-binding protein Era [Escherichia coli MS 84-1] gi|300920734|ref|ZP_07137140.1| GTP-binding protein Era [Escherichia coli MS 115-1] gi|300927692|ref|ZP_07143260.1| GTP-binding protein Era [Escherichia coli MS 187-1] gi|300951716|ref|ZP_07165535.1| GTP-binding protein Era [Escherichia coli MS 116-1] gi|300958793|ref|ZP_07170905.1| GTP-binding protein Era [Escherichia coli MS 175-1] gi|301022060|ref|ZP_07185987.1| GTP-binding protein Era [Escherichia coli MS 196-1] gi|301302933|ref|ZP_07209061.1| GTP-binding protein Era [Escherichia coli MS 124-1] gi|301648330|ref|ZP_07248070.1| GTP-binding protein Era [Escherichia coli MS 146-1] gi|307139202|ref|ZP_07498558.1| GTP-binding protein Era [Escherichia coli H736] gi|312973188|ref|ZP_07787360.1| GTP-binding protein Era [Escherichia coli 1827-70] gi|331643190|ref|ZP_08344325.1| GTP-binding protein Era [Escherichia coli H736] gi|331654028|ref|ZP_08355029.1| GTP-binding protein Era [Escherichia coli M718] gi|462020|sp|P06616|ERA_ECOLI RecName: Full=GTPase Era; Short=ERA; AltName: Full=GTP-binding protein Era gi|189037270|sp|A8A376|ERA_ECOHS RecName: Full=GTPase Era gi|189037272|sp|B1IVR1|ERA_ECOLC RecName: Full=GTPase Era gi|226741210|sp|B1XB40|ERA_ECODH RecName: Full=GTPase Era gi|259645943|sp|C4ZYI9|ERA_ECOBW RecName: Full=GTPase Era gi|5822055|pdb|1EGA|A Chain A, Crystal Structure Of A Widely Conserved Gtpase Era gi|5822056|pdb|1EGA|B Chain B, Crystal Structure Of A Widely Conserved Gtpase Era gi|67464189|pdb|1X1L|X Chain X, Interaction Of Era,A Gtpase Protein, With The 3'minor Domain Of The 16s Rrna Within The Thermus Thermophilus 30s Subunit. gi|256599905|pdb|3IEU|A Chain A, Crystal Structure Of Era In Complex With Gdp gi|256599906|pdb|3IEU|B Chain B, Crystal Structure Of Era In Complex With Gdp gi|416295|gb|AAA03242.1| era [Escherichia coli] gi|987641|dbj|BAA10913.1| GTP binding protein [Escherichia coli K-12] gi|998396|gb|AAB34156.1| GTPase, Era [Escherichia coli, Peptide Mutant, 301 aa] gi|1033155|gb|AAA79828.1| GTP-binding protein [Escherichia coli str. K-12 substr. MG1655] gi|1788919|gb|AAC75619.1| membrane-associated, 16S rRNA-binding GTPase [Escherichia coli str. K-12 substr. MG1655] gi|85675457|dbj|BAE76742.1| membrane-associated, 16S rRNA-binding GTPase [Escherichia coli str. K12 substr. W3110] gi|157067725|gb|ABV06980.1| GTP-binding protein Era [Escherichia coli HS] gi|169754079|gb|ACA76778.1| GTP-binding protein Era [Escherichia coli ATCC 8739] gi|169890010|gb|ACB03717.1| membrane-associated, 16S rRNA-binding GTPase [Escherichia coli str. K-12 substr. DH10B] gi|188487952|gb|EDU63055.1| GTP-binding protein Era [Escherichia coli 53638] gi|194423459|gb|EDX39450.1| GTP-binding protein Era [Escherichia coli 101-1] gi|238861749|gb|ACR63747.1| membrane-associated, 16S rRNA-binding GTPase [Escherichia coli BW2952] gi|242378167|emb|CAQ32941.1| GTP-binding protein [Escherichia coli BL21(DE3)] gi|253323579|gb|ACT28181.1| GTP-binding protein Era [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974442|gb|ACT40113.1| GTP-binding protein Era [Escherichia coli B str. REL606] gi|253978609|gb|ACT44279.1| GTP-binding protein Era [Escherichia coli BL21(DE3)] gi|260448354|gb|ACX38776.1| GTP-binding protein Era [Escherichia coli DH1] gi|291433483|gb|EFF06462.1| GTP-binding protein Era [Escherichia coli B185] gi|299881365|gb|EFI89576.1| GTP-binding protein Era [Escherichia coli MS 196-1] gi|300314541|gb|EFJ64325.1| GTP-binding protein Era [Escherichia coli MS 175-1] gi|300403783|gb|EFJ87321.1| GTP-binding protein Era [Escherichia coli MS 84-1] gi|300412305|gb|EFJ95615.1| GTP-binding protein Era [Escherichia coli MS 115-1] gi|300449000|gb|EFK12620.1| GTP-binding protein Era [Escherichia coli MS 116-1] gi|300464245|gb|EFK27738.1| GTP-binding protein Era [Escherichia coli MS 187-1] gi|300841868|gb|EFK69628.1| GTP-binding protein Era [Escherichia coli MS 124-1] gi|301073606|gb|EFK88412.1| GTP-binding protein Era [Escherichia coli MS 146-1] gi|309702952|emb|CBJ02283.1| GTP-binding protein [Escherichia coli ETEC H10407] gi|310331783|gb|EFP99018.1| GTP-binding protein Era [Escherichia coli 1827-70] gi|315137190|dbj|BAJ44349.1| GTP-binding protein Era [Escherichia coli DH1] gi|315256594|gb|EFU36562.1| GTP-binding protein Era [Escherichia coli MS 85-1] gi|315615828|gb|EFU96460.1| GTP-binding protein Era [Escherichia coli 3431] gi|323936306|gb|EGB32597.1| GTP-binding protein Era [Escherichia coli E1520] gi|323941171|gb|EGB37356.1| GTP-binding protein Era [Escherichia coli E482] gi|323961181|gb|EGB56794.1| GTP-binding protein Era [Escherichia coli H489] gi|323971108|gb|EGB66355.1| GTP-binding protein Era [Escherichia coli TA007] gi|331039988|gb|EGI12208.1| GTP-binding protein Era [Escherichia coli H736] gi|331048877|gb|EGI20953.1| GTP-binding protein Era [Escherichia coli M718] gi|332344441|gb|AEE57775.1| GTP-binding protein [Escherichia coli UMNK88] Length = 301 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 51/178 (28%), Positives = 89/178 (50%), Gaps = 6/178 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N+L+ +K+++ TR R+ G VDT G+ + Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN +I + L++F+++ TP D + + LR+ P+I+ NK+D Sbjct: 71 KRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNV 129 Query: 125 IAQRNF-----YEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 + + + ++F +IV ISAE L + +++ K + + P + I + Sbjct: 130 QEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPEATHHFPEDYITD 187 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 52/167 (31%), Positives = 83/167 (49%), Gaps = 9/167 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS-VSISWNWKNHPIEIFDTAGMRKP 264 IA+VGRPNVGKSTL+N+LLG +T ++ TR V I I + DT G+ Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYV-DTPGLHME 69 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 + ++ + K + S+ E I +++ T + D +++ + V+LA+NK Sbjct: 70 EK--RAINRLMNKAASSSIGDVELVIFVVEGT-RWTPDDEMVLNKLREGKAPVILAVNKV 126 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSV 371 D V +K +LL L+ A Q+ + I IS TG +D + V Sbjct: 127 DNVQEKADLLPHLQFLA----SQMNFLDIVPISAETGLNVDTIAAIV 169 >gi|261345440|ref|ZP_05973084.1| GTP-binding protein Era [Providencia rustigianii DSM 4541] gi|282566487|gb|EFB72022.1| GTP-binding protein Era [Providencia rustigianii DSM 4541] Length = 302 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 52/170 (30%), Positives = 84/170 (49%), Gaps = 10/170 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N+L+ +K+++ P TR R+ G + VDT G+ + Sbjct: 11 VAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGINTEDNYQIIYVDTPGLHIEE 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN +I + L++F+++ TP D + + L P+I+ NK+D Sbjct: 71 KRAINRLMNRAASSSIGDVELVIFVVEG-THWTPDDEMVVNKLSSLRCPVILAINKIDNV 129 Query: 125 IAQRNFYEIYS-----LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPN 169 + + + ++F ++V ISAE G I KI KQ P Sbjct: 130 VDKTSLLPHIGMISQKMNFLDVVPISAEKGQGV----DTIAKIVKQHIPE 175 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 53/168 (31%), Positives = 79/168 (47%), Gaps = 23/168 (13%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMR-KP 264 +A+VGRPNVGKSTL+N+LLG +T + TR + N+ I DT G+ + Sbjct: 11 VAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGINTEDNYQIIYVDTPGLHIEE 70 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 R L + S+ V E I +++ T + D +V+ + + V+LA+NK Sbjct: 71 KRAINRLMNRAASSSIGDV---ELVIFVVEGT-HWTPDDEMVVNKLSSLRCPVILAINKI 126 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIY-------INTISGRTGEGLD 365 D V DK +L LP IG I + IS G+G+D Sbjct: 127 DNVVDKTSL-----------LPHIGMISQKMNFLDVVPISAEKGQGVD 163 >gi|148981906|ref|ZP_01816564.1| GTP-binding protein Era [Vibrionales bacterium SWAT-3] gi|145960707|gb|EDK26049.1| GTP-binding protein Era [Vibrionales bacterium SWAT-3] Length = 323 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 47/148 (31%), Positives = 78/148 (52%), Gaps = 6/148 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N ++ +K+++ P TR R+ G VDT G+ + Sbjct: 32 IAIVGRPNVGKSTLLNHILGQKISITSRKPQTTRHRIMGVETEGDYQAIFVDTPGLHIEE 91 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD-- 122 +I + MN ++++ +L+ FL+D T D + + L+K + P+++ NK+D Sbjct: 92 KRAINRLMNRAANSSLSDVNLVFFLVDG-THWTEDDEMVLNKLKKTDFPVVLCINKVDNV 150 Query: 123 ---TRIAQRNFYEIYSLDFKEIVEISAE 147 T + Q +DF ++V ISA+ Sbjct: 151 QDRTNVMQHMMEVSKKMDFIDVVPISAK 178 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 50/169 (29%), Positives = 80/169 (47%), Gaps = 9/169 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMR-KP 264 IA+VGRPNVGKSTL+N +LG +T + TR + ++ DT G+ + Sbjct: 32 IAIVGRPNVGKSTLLNHILGQKISITSRKPQTTRHRIMGVETEGDYQAIFVDTPGLHIEE 91 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 R L + S+ V L+D T + + D +++ + T VVL +NK Sbjct: 92 KRAINRLMNRAANSSLSDVNLV---FFLVDGT-HWTEDDEMVLNKLKKTDFPVVLCINKV 147 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 D V D+ N++Q + + K + I + IS + G+ +D L V E Sbjct: 148 DNVQDRTNVMQHMMEVSKK----MDFIDVVPISAKQGKNIDVLRKHVRE 192 >gi|91785808|ref|YP_561014.1| tRNA modification GTPase TrmE [Burkholderia xenovorans LB400] gi|122970036|sp|Q13SH7|MNME_BURXL RecName: Full=tRNA modification GTPase mnmE gi|91689762|gb|ABE32962.1| tRNA modification GTPase trmE [Burkholderia xenovorans LB400] Length = 464 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 52/164 (31%), Positives = 85/164 (51%), Gaps = 12/164 (7%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 ++ + G PNVGKS+L N L ++A+V G TRD++ I G+ +++DTAG+ D Sbjct: 228 SVVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQIEGIPLHVIDTAGLRDT 287 Query: 64 KN----CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 ++ IA+ N+ I A ++L L+D++ G+T D AI +P++ V N Sbjct: 288 EDEVEKIGIARTWNE-----IERADVVLHLLDARTGMTVEDEAIAGRF-PAGVPVVRVLN 341 Query: 120 KMD-TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKI 162 K D T +A LD E V +SA+ G + L + +I Sbjct: 342 KTDLTGLAPATRALDADLDLSE-VRLSAKQGDGVALLREELLRI 384 Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 65/282 (23%), Positives = 116/282 (41%), Gaps = 35/282 (12%) Query: 114 IIIVSNKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLE 173 +I S + R A R+ +S D +VE + ++ + + P E Sbjct: 142 LIEASTEAAARSAGRSLDGAFSRDIHALVE------------DVITLRMLVEATLDFPEE 189 Query: 174 MIENNKRNEESPK--------ENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLG 225 I+ + + K ++ SE + + + L + + G+PNVGKS+L+N L G Sbjct: 190 EIDFLEAADARGKLARIRERLGHVLSEARQGAL-LREGLSVVLAGQPNVGKSSLLNALAG 248 Query: 226 YNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRT 285 + +G TRD V+ + + P+ + DTAG+R + +E+ + ++ + Sbjct: 249 AELAIVTPIAGTTRDKVAQTIQIEGIPLHVIDTAGLRDTE---DEVEKIGIARTWNEIER 305 Query: 286 CETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNL 345 + + LLDA +D I F G VV LNK D+ A + L Sbjct: 306 ADVVLHLLDARTGMTVEDEAIAGR-FPAGVPVVRVLNKTDLTG---------LAPATRAL 355 Query: 346 PQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYL 387 D+ +S + G+G+ L +L I W+ + YL Sbjct: 356 DADLDLSEVRLSAKQGDGVALLREELLRIAG-WQAGAESVYL 396 >gi|167626235|ref|YP_001676735.1| GTP-binding protein Era [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167596236|gb|ABZ86234.1| GTP-binding protein [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 297 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 52/163 (31%), Positives = 83/163 (50%), Gaps = 5/163 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 I+I+G PNVGKSTL N ++K K+++ P TR ++ G + F VDT GI + Sbjct: 7 ISIIGRPNVGKSTLLNNILKYKISITSRKPQTTRHQITGIKTLGDTQFIYVDTPGIHIDE 66 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I K MN + E +ILF+++ T + I L+ +PI +V NK+D + Sbjct: 67 PKAINKFMNKAATAMVKEVDVILFVVEL-GKWTELEDNIVEKLKHSQVPIFLVVNKVDKK 125 Query: 125 IAQRNFYEIYS----LDFKEIVEISAEHDLGTSELHSVIFKIF 163 + I S L F +++ +SA+ +EL S I K+ Sbjct: 126 KSLEASMFIESIKEKLSFYDVIYVSAKQGHNVNELESRIEKLL 168 Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust. Identities = 17/38 (44%), Positives = 26/38 (68%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 I+++GRPNVGKSTL+N +L Y +T + TR ++ Sbjct: 7 ISIIGRPNVGKSTLLNNILKYKISITSRKPQTTRHQIT 44 >gi|116626742|ref|YP_828898.1| GTP-binding protein Era [Candidatus Solibacter usitatus Ellin6076] gi|116229904|gb|ABJ88613.1| GTP-binding protein Era [Candidatus Solibacter usitatus Ellin6076] Length = 304 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 78/162 (48%), Gaps = 6/162 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 ++++G PN GKSTL N LV +K+A+V + P TR + G + DT GI Sbjct: 10 VSLIGRPNAGKSTLLNALVGQKVAIVADKPQTTRTSIQGVLTLPEAQIVFADTPGIHKA- 68 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + K++ D A+ E L+LF+ D+ D R+ P+++V NK+D Sbjct: 69 DTPLNKRLMDTVRGALEERDLLLFVADATRKFNEDDRRAIDIARRHKTPVVLVLNKIDLL 128 Query: 125 IAQRNFYEIYS-----LDFKEIVEISAEHDLGTSELHSVIFK 161 + + + +F E V +S+ +G +L +VI K Sbjct: 129 KDKAHLLPLIEEYKAVFEFTEYVPVSSVKKIGLDQLRAVILK 170 Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 40/129 (31%), Positives = 62/129 (48%), Gaps = 3/129 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 ++++GRPN GKSTL+N L+G + + TR S+ I DT G+ K Sbjct: 10 VSLIGRPNAGKSTLLNALVGQKVAIVADKPQTTRTSIQGVLTLPEAQIVFADTPGIHKAD 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 TV+ +++ + + + DAT F + D R +D VVL LNK D Sbjct: 70 TPLNKRLMDTVRGALEE---RDLLLFVADATRKFNEDDRRAIDIARRHKTPVVLVLNKID 126 Query: 326 MVSDKLNLL 334 ++ DK +LL Sbjct: 127 LLKDKAHLL 135 >gi|317452837|emb|CBL87854.1| GTP-binding protein-like protein [Helicobacter pylori] Length = 170 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 51/156 (32%), Positives = 82/156 (52%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+ Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMV 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISAL 158 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMVKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|307266976|ref|ZP_07548493.1| GTP-binding protein Era [Thermoanaerobacter wiegelii Rt8.B1] gi|306918025|gb|EFN48282.1| GTP-binding protein Era [Thermoanaerobacter wiegelii Rt8.B1] Length = 302 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 50/148 (33%), Positives = 84/148 (56%), Gaps = 9/148 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG NVGKSTL N ++++K+A+ P TR+ ++G + VDT GI K Sbjct: 8 VALVGRTNVGKSTLLNAILQEKIAITSPKPQTTRNTIHGILTTDEYQVIFVDTPGIHKPK 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD-- 122 + +++ M + + + E LIL++I+ I P D I L++ + P+I+V NK+D Sbjct: 68 S-KLSEFMIEVAKRTLKEVDLILYMIEPDTEIGPGDRYIIEHLKEVDTPVILVVNKIDLV 126 Query: 123 --TRIAQ--RNFYEIYSLDFKEIVEISA 146 R+ + + F E Y +FK++V ISA Sbjct: 127 PEKRVEETIKIFKEQY--EFKDVVAISA 152 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 32/126 (25%), Positives = 67/126 (53%), Gaps = 5/126 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP- 264 +A+VGR NVGKSTL+N +L +T + TR+++ + + DT G+ KP Sbjct: 8 VALVGRTNVGKSTLLNAILQEKIAITSPKPQTTRNTIHGILTTDEYQVIFVDTPGIHKPK 67 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 S+++E + ++ + ++++ + + +++ D I++ + V+L +NK Sbjct: 68 SKLSEFM----IEVAKRTLKEVDLILYMIEPDTEIGPGDRYIIEHLKEVDTPVILVVNKI 123 Query: 325 DMVSDK 330 D+V +K Sbjct: 124 DLVPEK 129 >gi|269976802|ref|ZP_06183777.1| GTP-binding protein Era [Mobiluncus mulieris 28-1] gi|307700621|ref|ZP_07637649.1| GTP-binding protein Era [Mobiluncus mulieris FB024-16] gi|269934999|gb|EEZ91558.1| GTP-binding protein Era [Mobiluncus mulieris 28-1] gi|307614151|gb|EFN93392.1| GTP-binding protein Era [Mobiluncus mulieris FB024-16] Length = 303 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 49/147 (33%), Positives = 75/147 (51%), Gaps = 6/147 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A++G PNVGKSTL N +V +K+A+ P TR G G +VDT GI + Sbjct: 19 VAVLGRPNVGKSTLINEMVGRKIAITSARPETTRHVARGIVHRPGFQLVLVDTPGIHRPR 78 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITS-FLRKKNIPIIIVSNKMDT 123 + +++ND+ E A + L++F + + I P D I LR IP + V K D Sbjct: 79 TL-LGQRLNDRVEEAQADVDLLVFCVPADQEIGPGDRRIVEKQLRANRIPALAVVTKTDV 137 Query: 124 RIAQRNFYEIYSL----DFKEIVEISA 146 + ++ +L DF+EIV +SA Sbjct: 138 ATPNQIAAQLLALNELYDFREIVPVSA 164 Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust. Identities = 44/175 (25%), Positives = 82/175 (46%), Gaps = 14/175 (8%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +AV+GRPNVGKSTLIN ++G +T ++ TR + + + DT G+ +P Sbjct: 19 VAVLGRPNVGKSTLINEMVGRKIAITSARPETTRHVARGIVHRPGFQLVLVDTPGIHRPR 78 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ----DLRIVDSVFNTGHAVVLA- 320 + L Q+ + V + + LL +P +++ D RIV+ LA Sbjct: 79 TL---LGQRLNDR----VEEAQADVDLLVFCVPADQEIGPGDRRIVEKQLRANRIPALAV 131 Query: 321 LNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEIN 375 + K D+ + Q L + + +I + ++ + G+ E L DL+ ++ ++ Sbjct: 132 VTKTDVATPNQIAAQLLALNELYDFREI--VPVSAVQGKQVELLIDLLGGLMPLS 184 >gi|223983398|ref|ZP_03633584.1| hypothetical protein HOLDEFILI_00864 [Holdemania filiformis DSM 12042] gi|223964570|gb|EEF68896.1| hypothetical protein HOLDEFILI_00864 [Holdemania filiformis DSM 12042] Length = 447 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 38/128 (29%), Positives = 76/128 (59%), Gaps = 5/128 (3%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + K ++ ++G+PNVGKS+L+N LL ++ + +G TRD V + +N + + DTA Sbjct: 216 MKKGVKTVILGKPNVGKSSLLNALLEEDKAIVTEIAGTTRDLVEGEIHLRNVTLHLIDTA 275 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+ + + +EQ +++SM+++ E +++LDA+ P + +D R++D G ++ Sbjct: 276 GIHQTE---DRVEQIGIERSMKALEEAELILIVLDASRPQDDEDRRLLD--LTEGRNRIV 330 Query: 320 ALNKWDMV 327 +NK D+ Sbjct: 331 VINKKDLA 338 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 40/120 (33%), Positives = 62/120 (51%), Gaps = 11/120 (9%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN- 65 I+G PNVGKS+L N L+++ A+V G TRD + G+ + V +++DTAGI ++ Sbjct: 224 ILGKPNVGKSSLLNALLEEDKAIVTEIAGTTRDLVEGEIHLRNVTLHLIDTAGIHQTEDR 283 Query: 66 ---CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 I + M A+ EA LIL ++D+ D + +N I+V NK D Sbjct: 284 VEQIGIERSMK-----ALEEAELILIVLDASRPQDDEDRRLLDLTEGRN--RIVVINKKD 336 >gi|325685111|gb|EGD27242.1| tRNA modification GTPase TrmE [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 461 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 59/177 (33%), Positives = 89/177 (50%), Gaps = 6/177 (3%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AIVG PNVGKS+L N L + A+V + G TRD L + GV ++DTAGI ++ Sbjct: 228 AIVGRPNVGKSSLLNYLTQSDKAIVTDVAGTTRDTLEEFVSVKGVPLELIDTAGIHHTED 287 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 + K ++++ AI +A LIL L+D +T D + K IIV NKMD + Sbjct: 288 -QVEKIGVERSKKAIAQADLILLLLDGSQELTEEDRRLLELTAGKK--RIIVLNKMD--L 342 Query: 126 AQR-NFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 Q+ EI E++ S EL ++I K+F + N +++ N+R Sbjct: 343 GQKLTAAEIAKESGSEVISTSIMMKENLDELEALIKKLFFKGIENSNDQVLVTNQRQ 399 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 72/123 (58%), Gaps = 5/123 (4%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 L+ A+VGRPNVGKS+L+N L ++ + +G TRD++ + K P+E+ DTAG+ Sbjct: 225 LKTAIVGRPNVGKSSLLNYLTQSDKAIVTDVAGTTRDTLEEFVSVKGVPLELIDTAGIHH 284 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 + +E+ V++S +++ + ++LLD + ++D R+++ G ++ LNK Sbjct: 285 TE---DQVEKIGVERSKKAIAQADLILLLLDGSQELTEEDRRLLE--LTAGKKRIIVLNK 339 Query: 324 WDM 326 D+ Sbjct: 340 MDL 342 >gi|313885592|ref|ZP_07819342.1| tRNA modification GTPase TrmE [Eremococcus coleocola ACS-139-V-Col8] gi|312619322|gb|EFR30761.1| tRNA modification GTPase TrmE [Eremococcus coleocola ACS-139-V-Col8] Length = 459 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 73/121 (60%), Gaps = 5/121 (4%) Query: 208 VVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRI 267 +VGRPNVGKS+L+NRL G+++ + G TRD++ N + P+++ DTAG+R+ + Sbjct: 226 IVGRPNVGKSSLLNRLTGWDKAIVTDIEGTTRDTIEEMVNVRGVPLKLIDTAGIRQTEEV 285 Query: 268 TESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMV 327 E + V++S +++ + I++L+ ++ DL ++ + + G ++ LNK D+ Sbjct: 286 VEKI---GVERSRKALEEADLVILILNQAEDLQEVDLELLKA--SQGKKRIILLNKQDLP 340 Query: 328 S 328 S Sbjct: 341 S 341 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 3/157 (1%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PNVGKS+L NRL A+V + G TRD + + GV ++DTAGI + Sbjct: 226 IVGRPNVGKSSLLNRLTGWDKAIVTDIEGTTRDTIEEMVNVRGVPLKLIDTAGIRQTEEV 285 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 + K +++ A+ EA L++ +++ + D + + K I++ + +++ Sbjct: 286 -VEKIGVERSRKALEEADLVILILNQAEDLQEVDLELLKASQGKKRIILLNKQDLPSQLD 344 Query: 127 QRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 + E S I+E S + G L I +F Sbjct: 345 RNALAE--SSGTATIIETSMLEEAGLDALEDEISNLF 379 >gi|225570320|ref|ZP_03779345.1| hypothetical protein CLOHYLEM_06417 [Clostridium hylemonae DSM 15053] gi|225160852|gb|EEG73471.1| hypothetical protein CLOHYLEM_06417 [Clostridium hylemonae DSM 15053] Length = 478 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 54/212 (25%), Positives = 102/212 (48%), Gaps = 16/212 (7%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 I + ++ +VGRPN GKS+L+N L+G R + +G TRD + N + + I DTA Sbjct: 224 IKEGIKTVIVGRPNAGKSSLLNVLVGEERAIVTEVAGTTRDILEEHINLQGISLNIIDTA 283 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R+ I E + V K+ + + ++DA+ P ++ D +I+ ++ G ++ Sbjct: 284 GIRETDDIVEKI---GVDKAKMYADEADLILYVIDASAPLDENDRQILKMIY--GKPAII 338 Query: 320 ALNKWDM----VSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSV---- 371 LNK D+ +K+ + + A N+ + +I + +S + G+ D +V Sbjct: 339 LLNKTDLDMIITKEKIKDVYNASNPANNNISKSKEIQVIEVSAKNQNGIADFEEAVKNMF 398 Query: 372 LEINKLWKTRITTSYLNSWLQKTQLQNPPPTI 403 E N + I Y+ + K LQ+ ++ Sbjct: 399 FEGNLSFNDEI---YITNVRHKAALQDAGGSL 427 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 56/170 (32%), Positives = 89/170 (52%), Gaps = 16/170 (9%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PN GKS+L N LV ++ A+V G TRD L + G+ NI+DTAGI + + Sbjct: 232 IVGRPNAGKSSLLNVLVGEERAIVTEVAGTTRDILEEHINLQGISLNIIDTAGIRETDDI 291 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK--MDTR 124 + K D+ ++ +EA LIL++ID+ A + D I + K P II+ NK +D Sbjct: 292 -VEKIGVDKAKMYADEADLILYVIDASAPLDENDRQILKMIYGK--PAIILLNKTDLDMI 348 Query: 125 IAQRNFYEIYSLD---------FKEI--VEISAEHDLGTSELHSVIFKIF 163 I + ++Y+ KEI +E+SA++ G ++ + +F Sbjct: 349 ITKEKIKDVYNASNPANNNISKSKEIQVIEVSAKNQNGIADFEEAVKNMF 398 >gi|319763844|ref|YP_004127781.1| gtp-binding protein era [Alicycliphilus denitrificans BC] gi|330823892|ref|YP_004387195.1| GTP-binding protein Era [Alicycliphilus denitrificans K601] gi|317118405|gb|ADV00894.1| GTP-binding protein Era [Alicycliphilus denitrificans BC] gi|329309264|gb|AEB83679.1| GTP-binding protein Era [Alicycliphilus denitrificans K601] Length = 313 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 58/181 (32%), Positives = 87/181 (48%), Gaps = 15/181 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N LV +K+++ TR R+ G F VDT G Sbjct: 23 IAIVGKPNVGKSTLMNALVGQKISITSRKAQTTRHRITGIRTRGQTQFVFVDTPGFQTRH 82 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 + ++ K +N AI + LILF++++ T D + S K IP ++++NK+DT Sbjct: 83 STALNKSLNKTVMGAIGDVDLILFVVEA-GSFTLADAKVLSLF-KPGIPTLLIANKLDTV 140 Query: 124 -RIAQ-----RNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 R A+ + E + F E V +SA++ L F I ++ P P E+ Sbjct: 141 HRRAEIAPWLKGMQERHP--FAEFVPMSAKNKGDIERL----FGICEKYLPEQPWWYAED 194 Query: 178 N 178 Sbjct: 195 E 195 Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust. Identities = 36/128 (28%), Positives = 64/128 (50%), Gaps = 4/128 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA+VG+PNVGKSTL+N L+G +T ++ TR ++ DT G + + Sbjct: 23 IAIVGKPNVGKSTLMNALVGQKISITSRKAQTTRHRITGIRTRGQTQFVFVDTPGFQ--T 80 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 R + +L + K M ++ + + +++A F D +++ S+F G +L NK D Sbjct: 81 RHSTALNKSLNKTVMGAIGDVDLILFVVEAG-SFTLADAKVL-SLFKPGIPTLLIANKLD 138 Query: 326 MVSDKLNL 333 V + + Sbjct: 139 TVHRRAEI 146 >gi|51244709|ref|YP_064593.1| tRNA modification GTPase TrmE [Desulfotalea psychrophila LSv54] gi|50875746|emb|CAG35586.1| probable tRNA modification GTPase (TrmE) [Desulfotalea psychrophila LSv54] Length = 501 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 44/173 (25%), Positives = 91/173 (52%), Gaps = 11/173 (6%) Query: 202 KPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGM 261 + + + + GRPNVGKS+L+N +L R L S +G TRDS+ + P+ I DTAG+ Sbjct: 258 QGISMVIAGRPNVGKSSLLNAVLQEERALVTSIAGTTRDSIEEMVDILGMPVRIVDTAGI 317 Query: 262 RKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLAL 321 R+ + E+L ++++ + + + + ++D + ++ DL + + + + ++ + Sbjct: 318 RRQAGEVEAL---GIQRAKDLINSADLVLFMVDGSRQLDQSDLELYEDIAH--KPMIAVI 372 Query: 322 NKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEI 374 NK D++++ L ++P++ IS R GEGL+ L ++ + Sbjct: 373 NKLDLLAEDGTAAAALLDFVPASVPRL------AISAREGEGLEALKQAIFTV 419 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 53/163 (32%), Positives = 79/163 (48%), Gaps = 8/163 (4%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 ++ I G PNVGKS+L N +++++ A+V + G TRD + I G+ IVDTAGI Sbjct: 261 SMVIAGRPNVGKSSLLNAVLQEERALVTSIAGTTRDSIEEMVDILGMPVRIVDTAGIRRQ 320 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 A + +L IN A L+LF++D + D + + K P+I V NK+D Sbjct: 321 AGEVEALGIQRAKDL-INSADLVLFMVDGSRQLDQSDLELYEDIAHK--PMIAVINKLDL 377 Query: 124 RIAQRNFYEIYSLDFKEI----VEISAEHDLGTSELHSVIFKI 162 +A+ LDF + ISA G L IF + Sbjct: 378 -LAEDGTAAAALLDFVPASVPRLAISAREGEGLEALKQAIFTV 419 >gi|269122927|ref|YP_003305504.1| GTP-binding protein Era [Streptobacillus moniliformis DSM 12112] gi|268314253|gb|ACZ00627.1| GTP-binding protein Era [Streptobacillus moniliformis DSM 12112] Length = 299 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 58/201 (28%), Positives = 97/201 (48%), Gaps = 9/201 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 I+IVG PN GKSTL N+L+ +K+A+V + G TRD++ G + +DT GI K Sbjct: 6 ISIVGRPNTGKSTLINKLIDEKVAIVSDKAGTTRDQIRGIVNKGENQYIFIDTPGIHKPK 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + + M + ++NE LILFL+D I D + +R P ++ NK+D Sbjct: 66 HL-LGEYMTNLAIESLNECDLILFLLDGTKEIGTGDIFVNENIRNSKTPTYVIINKIDKM 124 Query: 125 IAQRNFYEIYSL-----DFKEIVEISAEHDLGTSELHSVIFKIFKQK---YPNHPLEMIE 176 + ++ + +F+ I+ +SA + +G ++ V K YP I Sbjct: 125 SDEELNNKVEEIREKLGEFEGIITMSAAYGIGIHKIFEVCEKYLSNDIWFYPEDYYTDIS 184 Query: 177 NNKRNEESPKENITSEGKSSV 197 NK E+ +E I + K + Sbjct: 185 VNKIVIETIREKILQKTKDEI 205 Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 41/137 (29%), Positives = 73/137 (53%), Gaps = 5/137 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 I++VGRPN GKSTLIN+L+ + ++G TRD + N + DT G+ KP Sbjct: 6 ISIVGRPNTGKSTLINKLIDEKVAIVSDKAGTTRDQIRGIVNKGENQYIFIDTPGIHKPK 65 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + L + +++S+ C+ + LLD T D+ + +++ N+ + +NK D Sbjct: 66 HL---LGEYMTNLAIESLNECDLILFLLDGTKEIGTGDIFVNENIRNSKTPTYVIINKID 122 Query: 326 MVSDKL--NLLQDLRTK 340 +SD+ N ++++R K Sbjct: 123 KMSDEELNNKVEEIREK 139 >gi|183601567|ref|ZP_02962937.1| GTP-binding protein Era [Bifidobacterium animalis subsp. lactis HN019] gi|219683898|ref|YP_002470281.1| GTP-binding protein Era [Bifidobacterium animalis subsp. lactis AD011] gi|241190934|ref|YP_002968328.1| GTP-binding protein Era [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196340|ref|YP_002969895.1| GTP-binding protein Era [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183219173|gb|EDT89814.1| GTP-binding protein Era [Bifidobacterium animalis subsp. lactis HN019] gi|219621548|gb|ACL29705.1| GTP-binding protein Era [Bifidobacterium animalis subsp. lactis AD011] gi|240249326|gb|ACS46266.1| GTP-binding protein Era [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250894|gb|ACS47833.1| GTP-binding protein Era [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295793923|gb|ADG33458.1| GTP-binding protein Era [Bifidobacterium animalis subsp. lactis V9] Length = 331 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 59/204 (28%), Positives = 98/204 (48%), Gaps = 24/204 (11%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTL N L+ ++A+ + P TR + G + +VDT GI + Sbjct: 24 VAVVGRPNVGKSTLINALIGMQIAIASSRPETTRKAIRGVLTTDNAQIVLVDTPGIHRPR 83 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLR------------KKNI 112 + +++ND + ++ ++ I FL+ + I P D I S LR K + Sbjct: 84 TL-LGQRLNDVVDESLADSDEIAFLLPADQEIGPGDRRILSRLRSQFATKNDDGTFKWKV 142 Query: 113 PIIIVSNKMD----TRIAQRNFYEIYSL-DFKEIVEISAEHDLGTSELHSVIFKIFKQKY 167 P+I + K+D T + + EI DF +IV +SA D E+ +V+ + Sbjct: 143 PLIAIVTKIDRLNRTELVNK-LIEINEFADFADIVPVSALGDDNLQEVRTVLI----EHL 197 Query: 168 PNHPLEMIENNKRNEESPKENITS 191 P P +M ++ EE P++ I Sbjct: 198 PEGP-QMYPTDQVTEERPEDAIAE 220 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 4/77 (5%) Query: 191 SEGKSSVKNISKPLR---IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWN 247 ++G +V ++ P R +AVVGRPNVGKSTLIN L+G + S+ TR ++ Sbjct: 7 TKGVDAVSGVT-PYRSGFVAVVGRPNVGKSTLINALIGMQIAIASSRPETTRKAIRGVLT 65 Query: 248 WKNHPIEIFDTAGMRKP 264 N I + DT G+ +P Sbjct: 66 TDNAQIVLVDTPGIHRP 82 >gi|170287887|ref|YP_001738125.1| GTP-binding protein Era [Thermotoga sp. RQ2] gi|170175390|gb|ACB08442.1| GTP-binding protein Era [Thermotoga sp. RQ2] Length = 301 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 89/169 (52%), Gaps = 9/169 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+ G+PNVGKST IN ++G ++ + TR+ ++ + K+ I DT G+ KP Sbjct: 9 VALAGKPNVGKSTFINVVMGRKVVIVSDKPQTTRNRINCIYTDKDSQIIFVDTPGIHKP- 67 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + VK ++Q+++ + + +LDA F K D + + V +G ++A+NK D Sbjct: 68 --LHRLGEYMVKAAVQALKGVDLILFMLDAADGFTKTDEHVAEIVNESGTKTIIAVNKID 125 Query: 326 MVS-DKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 + +K + L ++N+ + ++ IS GEG+ +++ + E Sbjct: 126 VAGEEKAKAVGQLAKSMVENV-----VSVHYISALKGEGVFEVLEKIKE 169 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 57/119 (47%), Gaps = 1/119 (0%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+ G PNVGKST N ++ +K+ +V + P TR+R+ VDT GI Sbjct: 9 VALAGKPNVGKSTFINVVMGRKVVIVSDKPQTTRNRINCIYTDKDSQIIFVDTPGIHKPL 68 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + + + M A+ LILF++D+ G T D + + + II NK+D Sbjct: 69 H-RLGEYMVKAAVQALKGVDLILFMLDAADGFTKTDEHVAEIVNESGTKTIIAVNKIDV 126 >gi|121534215|ref|ZP_01666040.1| GTP-binding protein Era [Thermosinus carboxydivorans Nor1] gi|121307318|gb|EAX48235.1| GTP-binding protein Era [Thermosinus carboxydivorans Nor1] Length = 298 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 54/179 (30%), Positives = 88/179 (49%), Gaps = 7/179 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A++G PNVGKSTL N LV +K+A++ + P TR+R+ ++ +DT GI K Sbjct: 12 VAVIGRPNVGKSTLVNSLVGQKIAIMSDKPQTTRNRILCVLTLDDAQILFIDTPGIHKPK 71 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + + M E + E +ILF++D+ A + I L K P+I+V NK+D + Sbjct: 72 H-RLGEYMVQAAETTLREVDVILFVVDATAEKGAGEQYILERLAKVATPVILVVNKVD-Q 129 Query: 125 IAQRNFYEIY-----SLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 I + I S DF +V ISA + L + K +P +M+ + Sbjct: 130 IPKPQVLPIIDQYARSRDFAAVVPISALQKVNLDRLLDEVKKHLAPGPKYYPDDMVTDQ 188 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +AV+GRPNVGKSTL+N L+G + + TR+ + + I DT G+ KP Sbjct: 12 VAVIGRPNVGKSTLVNSLVGQKIAIMSDKPQTTRNRILCVLTLDDAQILFIDTPGIHKPK 71 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + V+ + ++R + + ++DAT + I++ + V+L +NK D Sbjct: 72 ---HRLGEYMVQAAETTLREVDVILFVVDATAEKGAGEQYILERLAKVATPVILVVNKVD 128 Query: 326 MV 327 + Sbjct: 129 QI 130 >gi|304385851|ref|ZP_07368195.1| tRNA modification GTPase TrmE [Pediococcus acidilactici DSM 20284] gi|304328355|gb|EFL95577.1| tRNA modification GTPase TrmE [Pediococcus acidilactici DSM 20284] Length = 486 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 42/136 (30%), Positives = 80/136 (58%), Gaps = 6/136 (4%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + L A++G PNVGKS+++N LL ++ + +G TRD + N + P+++ D Sbjct: 242 KVLRDGLATAIIGHPNVGKSSILNHLLHEDKAIVTDVAGTTRDVIEEYVNVQGVPLKLVD 301 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+ + + +E+ V +S ++++ + I++LD+++P +D +++D N V Sbjct: 302 TAGIHETE---DKVEKIGVDRSRKALQQADLVILVLDSSVPLRDEDRQLLDQTANMQRIV 358 Query: 318 VLALNKWDMVSDKLNL 333 V LNK D+ + K+NL Sbjct: 359 V--LNKTDLPT-KINL 371 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 54/160 (33%), Positives = 89/160 (55%), Gaps = 7/160 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS++ N L+ + A+V + G TRD + + GV +VDTAGI + ++ Sbjct: 251 AIIGHPNVGKSSILNHLLHEDKAIVTDVAGTTRDVIEEYVNVQGVPLKLVDTAGIHETED 310 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD--T 123 + K D++ A+ +A L++ ++DS + D + + N+ I+V NK D T Sbjct: 311 -KVEKIGVDRSRKALQQADLVILVLDSSVPLRDEDRQLLD--QTANMQRIVVLNKTDLPT 367 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 +I N + Y+ + EI++ SA LGT +L I K+F Sbjct: 368 KI-NLNELQKYASE-AEIIKSSAVAPLGTKDLEDRIAKLF 405 >gi|329115888|ref|ZP_08244605.1| tRNA modification GTPase TrmE [Streptococcus parauberis NCFD 2020] gi|326906293|gb|EGE53207.1| tRNA modification GTPase TrmE [Streptococcus parauberis NCFD 2020] Length = 458 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 44/120 (36%), Positives = 72/120 (60%), Gaps = 3/120 (2%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L++++ A+V + G TRD + I GV +VDTAGI D ++ Sbjct: 228 AIIGRPNVGKSSLLNNLLREEKAIVTDIAGTTRDVIEEYVNIKGVPLKLVDTAGIRDTED 287 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 + K ++++ A+NEA L+L ++++ +T DH + + N II+ NK D + Sbjct: 288 I-VEKIGVERSKKALNEADLVLLVLNASEKLTEQDHILLDLSQDSN--RIILLNKTDLEV 344 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 40/129 (31%), Positives = 74/129 (57%), Gaps = 5/129 (3%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L A++GRPNVGKS+L+N LL + + +G TRD + N K P+++ D Sbjct: 219 KILREGLSTAIIGRPNVGKSSLLNNLLREEKAIVTDIAGTTRDVIEEYVNIKGVPLKLVD 278 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R I E + V++S +++ + +++L+A+ +QD ++D ++ Sbjct: 279 TAGIRDTEDIVEKI---GVERSKKALNEADLVLLVLNASEKLTEQDHILLDLSQDSNR-- 333 Query: 318 VLALNKWDM 326 ++ LNK D+ Sbjct: 334 IILLNKTDL 342 >gi|300853996|ref|YP_003778980.1| putative ras-like GTP-binding protein [Clostridium ljungdahlii DSM 13528] gi|300434111|gb|ADK13878.1| predicted ras-like GTP-binding protein [Clostridium ljungdahlii DSM 13528] Length = 293 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 58/184 (31%), Positives = 95/184 (51%), Gaps = 13/184 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNI--VDTAGIAD 62 I I+G PNVGKSTL N ++ +K+++V P TR+ + Q I+ F + VDT GI Sbjct: 7 ITIIGRPNVGKSTLLNNIMGEKLSIVSCRPQTTRNSI--QTILTEDDFQLVFVDTPGIHK 64 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 K+ + M E +I + L+LFL + D I L+K N+P+ +V NK+D Sbjct: 65 PKH-KLGDYMVKAAEDSIKDVDLVLFLTTPELEPGKGDLYILEELKKCNVPVFLVLNKID 123 Query: 123 T----RIAQ--RNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIE 176 R+A+ +N+ I+ +F E++ ISA EL ++ K + +P +MI Sbjct: 124 ENPEQRVAETLKNYSAIF--NFVEVIPISALKKKNVEELIDLMVKYMPEGPKYYPDDMIT 181 Query: 177 NNKR 180 + + Sbjct: 182 DKQE 185 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/168 (28%), Positives = 80/168 (47%), Gaps = 7/168 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 I ++GRPNVGKSTL+N ++G + + TR+S+ + + DT G+ KP Sbjct: 7 ITIIGRPNVGKSTLLNNIMGEKLSIVSCRPQTTRNSIQTILTEDDFQLVFVDTPGIHKPK 66 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L VK + S++ + + L + K DL I++ + V L LNK D Sbjct: 67 H---KLGDYMVKAAEDSIKDVDLVLFLTTPELEPGKGDLYILEELKKCNVPVFLVLNKID 123 Query: 326 MVSDKLNLLQDLRT-KAIKNLPQIGDIYINTISGRTGEGLDDLMVSVL 372 ++ + + L+ AI N ++ I I+ + + E L DLMV + Sbjct: 124 ENPEQ-RVAETLKNYSAIFNFVEV--IPISALKKKNVEELIDLMVKYM 168 >gi|307609736|emb|CBW99247.1| hypothetical protein LPW_10281 [Legionella pneumophila 130b] Length = 295 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 51/165 (30%), Positives = 81/165 (49%), Gaps = 20/165 (12%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTL NR++++K+++ P TR + G + F VDT GI G Sbjct: 8 IALVGRPNVGKSTLLNRILQQKLSITSRKPQTTRHSILGIRTEDEFQFVYVDTPGIHQGN 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD-- 122 +I + MN + + +I FL+D D + + +++ +P I+V NK+D Sbjct: 68 AKAINRMMNKTAISVLRDVDVIAFLVDG-THWKDEDEYVLNLIKQAKVPCILVVNKVDKI 126 Query: 123 ----------TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHS 157 +I+QR Y+ F I+ +SA+ L EL Sbjct: 127 TDKTQLLPWIEQISQR--YQ-----FAAIIPLSAKTGLQVDELEG 164 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 37/129 (28%), Positives = 66/129 (51%), Gaps = 3/129 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA+VGRPNVGKSTL+NR+L +T + TR S+ DT G+ + + Sbjct: 8 IALVGRPNVGKSTLLNRILQQKLSITSRKPQTTRHSILGIRTEDEFQFVYVDTPGIHQGN 67 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +++ + K ++ +R + L+D T ++ +D +++ + +L +NK D Sbjct: 68 --AKAINRMMNKTAISVLRDVDVIAFLVDGT-HWKDEDEYVLNLIKQAKVPCILVVNKVD 124 Query: 326 MVSDKLNLL 334 ++DK LL Sbjct: 125 KITDKTQLL 133 >gi|122702313|emb|CAL88347.1| GTPase [Helicobacter pylori] Length = 170 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 51/156 (32%), Positives = 82/156 (52%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +N ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNDHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGVPKSFNISVSHNRGISAL 158 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 66/121 (54%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD +H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNDHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|113868516|ref|YP_727005.1| GTP-binding protein Era [Ralstonia eutropha H16] gi|113527292|emb|CAJ93637.1| GTPase [Ralstonia eutropha H16] Length = 312 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 49/156 (31%), Positives = 79/156 (50%), Gaps = 13/156 (8%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AIVG PNVGKSTL N LV +K+++ TR R+ G + + VDT G Sbjct: 23 TVAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRIVGIQTTDDAQYVFVDTPGFQTR 82 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 ++ + +N ++ L+LF+++ AG D L KN P+++V+NK+D Sbjct: 83 HASALNRSLNRAVTSTLSSVDLVLFVVE--AGYYGADDEKVLSLLPKNTPVLLVANKLD- 139 Query: 124 RIAQRNFYEIY---------SLDFKEIVEISAE-HD 149 R+ N E+ F+E+V ++A+ HD Sbjct: 140 RVNGENRLEVMMPFLEKMGQQFPFREVVPMTAKTHD 175 Score = 43.9 bits (102), Expect = 0.050, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 64/145 (44%), Gaps = 10/145 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGM--RK 263 +A+VGRPNVGKSTL+N L+G +T ++ TR + + DT G R Sbjct: 24 VAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRIVGIQTTDDAQYVFVDTPGFQTRH 83 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 S + SL + V ++ SV +VL + D V S+ V+L NK Sbjct: 84 ASALNRSL-NRAVTSTLSSV-----DLVLFVVEAGYYGADDEKVLSLLPKNTPVLLVANK 137 Query: 324 WDMV--SDKLNLLQDLRTKAIKNLP 346 D V ++L ++ K + P Sbjct: 138 LDRVNGENRLEVMMPFLEKMGQQFP 162 >gi|270289896|ref|ZP_06196122.1| tRNA modification GTPase TrmE [Pediococcus acidilactici 7_4] gi|270281433|gb|EFA27265.1| tRNA modification GTPase TrmE [Pediococcus acidilactici 7_4] Length = 464 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 42/136 (30%), Positives = 80/136 (58%), Gaps = 6/136 (4%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + L A++G PNVGKS+++N LL ++ + +G TRD + N + P+++ D Sbjct: 220 KVLRDGLATAIIGHPNVGKSSILNHLLHEDKAIVTDVAGTTRDVIEEYVNVQGVPLKLVD 279 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+ + + +E+ V +S ++++ + I++LD+++P +D +++D N V Sbjct: 280 TAGIHETE---DKVEKIGVDRSRKALQQADLVILVLDSSVPLRDEDRQLLDQTANMQRIV 336 Query: 318 VLALNKWDMVSDKLNL 333 V LNK D+ + K+NL Sbjct: 337 V--LNKTDLPT-KINL 349 Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 54/160 (33%), Positives = 89/160 (55%), Gaps = 7/160 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS++ N L+ + A+V + G TRD + + GV +VDTAGI + ++ Sbjct: 229 AIIGHPNVGKSSILNHLLHEDKAIVTDVAGTTRDVIEEYVNVQGVPLKLVDTAGIHETED 288 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD--T 123 + K D++ A+ +A L++ ++DS + D + + N+ I+V NK D T Sbjct: 289 -KVEKIGVDRSRKALQQADLVILVLDSSVPLRDEDRQLLD--QTANMQRIVVLNKTDLPT 345 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 +I N + Y+ + EI++ SA LGT +L I K+F Sbjct: 346 KI-NLNELQKYASE-AEIIKSSAVAPLGTKDLEDRIAKLF 383 >gi|261211554|ref|ZP_05925842.1| GTP-binding protein Era [Vibrio sp. RC341] gi|260839509|gb|EEX66135.1| GTP-binding protein Era [Vibrio sp. RC341] Length = 324 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 52/177 (29%), Positives = 91/177 (51%), Gaps = 8/177 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N L+ +K+++ P TR R+ G VDT G+ + Sbjct: 33 VAIVGRPNVGKSTLLNNLLGQKISITSRKPQTTRHRIMGVETEGKYQAIYVDTPGLHIEE 92 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN ++++ +L+LF+++ T D + + L+K N P+++ NK+D + Sbjct: 93 KRAINRLMNRAASSSLSDVNLVLFVVEG-THWTADDEMVFTKLQKANFPVVLCVNKVD-Q 150 Query: 125 IAQRNFYEIYSLD------FKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 + RN ++ L+ F +IV ISA+ T L + + + + P E + Sbjct: 151 VKDRNEVMLHMLELSKRMPFVDIVPISAKQGKNTDVLKKHVREHLPKAVHHFPEEYV 207 Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust. Identities = 47/170 (27%), Positives = 75/170 (44%), Gaps = 11/170 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV-SISWNWKNHPIEIFDTAGMR-K 263 +A+VGRPNVGKSTL+N LLG +T + TR + + K I + DT G+ + Sbjct: 33 VAIVGRPNVGKSTLLNNLLGQKISITSRKPQTTRHRIMGVETEGKYQAIYV-DTPGLHIE 91 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 R L + S+ V ++ + + D + + VVL +NK Sbjct: 92 EKRAINRLMNRAASSSLSDV----NLVLFVVEGTHWTADDEMVFTKLQKANFPVVLCVNK 147 Query: 324 WDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 D V D+ ++ + + K +P + I IS + G+ D L V E Sbjct: 148 VDQVKDRNEVMLHM-LELSKRMPFVD---IVPISAKQGKNTDVLKKHVRE 193 >gi|258512903|ref|YP_003186337.1| tRNA modification GTPase TrmE [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479629|gb|ACV59948.1| tRNA modification GTPase TrmE [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 465 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 64/239 (26%), Positives = 114/239 (47%), Gaps = 23/239 (9%) Query: 167 YPNHPLEMIENNKRNEESPKENITSEGKSSVKN--ISKPLR----IAVVGRPNVGKSTLI 220 YP H +E + + + S E + E + +++ + + LR A+VGRPNVGKS+L+ Sbjct: 187 YPEHDVEDVACD--HVVSVCEGMMGEIDALIRSAELGRVLRDGVATAIVGRPNVGKSSLL 244 Query: 221 NRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSM 280 N L+ R + G TRD + N + P+ + DTAG+R+ + E + V +S Sbjct: 245 NALVERERAIVTDLPGTTRDVLEEYINLRGIPLRLIDTAGIRETEDVVERI---GVARSR 301 Query: 281 QSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTK 340 QS++ E +++LD + P +D I + G ++ LNK D + + Sbjct: 302 QSMQEAELVLLVLDGSEPPSPEDEAIARE--SDGSRRIVVLNKVD---------RGIHPD 350 Query: 341 AIKNLPQIGDIYINTISGRTGEGLDDLMVSVL-EINKLWKTRITTSYLNSWLQKTQLQN 398 A + ++ +S R G GLD L +++ +I + + SY+ + QK L+ Sbjct: 351 AARFADELAPEGAVRVSAREGTGLDTLRDAMVNKIRRDLAIDLDASYMANHRQKRLLEE 409 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 43/120 (35%), Positives = 68/120 (56%), Gaps = 3/120 (2%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AIVG PNVGKS+L N LV+++ A+V + PG TRD L + G+ ++DTAGI + ++ Sbjct: 231 AIVGRPNVGKSSLLNALVERERAIVTDLPGTTRDVLEEYINLRGIPLRLIDTAGIRETED 290 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 + + ++ ++ EA L+L ++D +P D AI I+V NK+D I Sbjct: 291 V-VERIGVARSRQSMQEAELVLLVLDGSEPPSPEDEAIAR--ESDGSRRIVVLNKVDRGI 347 >gi|19703615|ref|NP_603177.1| GTP-binding protein Era [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|25008422|sp|Q8RGM1|ERA_FUSNN RecName: Full=GTPase Era gi|19713721|gb|AAL94476.1| GTP-binding protein era [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 296 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 42/126 (33%), Positives = 74/126 (58%), Gaps = 4/126 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IAVVGRPNVGKSTLIN+L+ + ++G TRD++ N+K++ DT G+ KP Sbjct: 6 IAVVGRPNVGKSTLINKLVSEKVAIVSDKAGTTRDNIKGILNFKDNQYIFIDTPGIHKPQ 65 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSV-FNTGHAVVLALNKW 324 + L + +++ ++ + + L+DA+ P D+ ++D + N+ +L +NK Sbjct: 66 HL---LGEYMTNIAVKILKDVDIILFLIDASKPIGTGDMFVMDRINENSKKPRILLVNKV 122 Query: 325 DMVSDK 330 D++SD+ Sbjct: 123 DLISDE 128 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 41/119 (34%), Positives = 66/119 (55%), Gaps = 2/119 (1%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTL N+LV +K+A+V + G TRD + G + +DT GI + Sbjct: 6 IAVVGRPNVGKSTLINKLVSEKVAIVSDKAGTTRDNIKGILNFKDNQYIFIDTPGIHKPQ 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKN-IPIIIVSNKMD 122 + + + M + + + +ILFLID+ I D + + + + P I++ NK+D Sbjct: 66 HL-LGEYMTNIAVKILKDVDIILFLIDASKPIGTGDMFVMDRINENSKKPRILLVNKVD 123 >gi|88797949|ref|ZP_01113536.1| GTP-binding protein Era [Reinekea sp. MED297] gi|88779146|gb|EAR10334.1| GTP-binding protein Era [Reinekea sp. MED297] Length = 302 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 46/147 (31%), Positives = 79/147 (53%), Gaps = 6/147 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N L+ +K+++ P TR ++ G + VDT G+ G+ Sbjct: 14 VAIVGRPNVGKSTLMNHLLGQKISITSRKPQTTRHQILGIWTEDKTQMVFVDTPGMHRGQ 73 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN + A+ + ++F++D + T D + L++ P+I+V NK+D Sbjct: 74 EKAINRAMNKAADTALTDIDAVIFVVD-RTVFTDEDAWVLEKLKRSRAPVILVINKVDQL 132 Query: 125 IAQRNFY---EIYS--LDFKEIVEISA 146 +++ E S FKE++ +SA Sbjct: 133 DDKQSLLPHIEAMSEKFAFKEVIPVSA 159 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 68/135 (50%), Gaps = 15/135 (11%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VGRPNVGKSTL+N LLG +T + TR + W + DT GM + Sbjct: 14 VAIVGRPNVGKSTLMNHLLGQKISITSRKPQTTRHQILGIWTEDKTQMVFVDTPGMHRG- 72 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATI------PFEKQDLRIVDSVFNTGHAVVL 319 ++K + ++M + +T + +DA I F +D +++ + + V+L Sbjct: 73 ------QEKAINRAMN--KAADTALTDIDAVIFVVDRTVFTDEDAWVLEKLKRSRAPVIL 124 Query: 320 ALNKWDMVSDKLNLL 334 +NK D + DK +LL Sbjct: 125 VINKVDQLDDKQSLL 139 >gi|294101372|ref|YP_003553230.1| tRNA modification GTPase TrmE [Aminobacterium colombiense DSM 12261] gi|293616352|gb|ADE56506.1| tRNA modification GTPase TrmE [Aminobacterium colombiense DSM 12261] Length = 455 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 39/123 (31%), Positives = 70/123 (56%), Gaps = 5/123 (4%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 +R+A+VGRPNVGKS+L+N LL +R + + G TRD + ++ PI + DTAG+ Sbjct: 220 IRVALVGRPNVGKSSLLNALLKESRAIVTAIPGTTRDLIEEVLTYRGIPIRLVDTAGIGA 279 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 P + +E + ++ +++ + I ++D + P DL +V + T H ++ +NK Sbjct: 280 PG---DEIEAMGIARAEKAMMEADVRIWVIDGSEPLTPADLALVQKISATNH--IVTINK 334 Query: 324 WDM 326 D+ Sbjct: 335 ADL 337 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 45/148 (30%), Positives = 76/148 (51%), Gaps = 11/148 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKS+L N L+K+ A+V PG TRD + G+ +VDTAGI Sbjct: 222 VALVGRPNVGKSSLLNALLKESRAIVTAIPGTTRDLIEEVLTYRGIPIRLVDTAGIGAPG 281 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITS---------FLRKKNIPII 115 + I + E A+ EA + +++ID +TP D A+ + K ++P++ Sbjct: 282 D-EIEAMGIARAEKAMMEADVRIWVIDGSEPLTPADLALVQKISATNHIVTINKADLPLV 340 Query: 116 IVSNKMDTRIAQRNFYEIYSLDFKEIVE 143 I ++ + Q + + S + +E +E Sbjct: 341 ISEEMINGLLPQSPVF-VISAEKREGIE 367 >gi|291296458|ref|YP_003507856.1| GTP-binding protein Era [Meiothermus ruber DSM 1279] gi|290471417|gb|ADD28836.1| GTP-binding protein Era [Meiothermus ruber DSM 1279] Length = 313 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 56/187 (29%), Positives = 90/187 (48%), Gaps = 9/187 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTL N ++ K+A + P TR R+ G VDT G + Sbjct: 20 VAVVGKPNVGKSTLVNTMLGVKIAPISPKPQTTRKRVRGIHTEGNRQIVFVDTPGWHEAS 79 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLR--KKNIPIIIVSNKMD 122 + ++++ M Q A+ E +L+L+L+D + T D + LR K +PII+V NK D Sbjct: 80 D-ALSEYMIRQITEALAEVNLVLWLVDLRHPPTHEDELVARALRPMKDQVPIILVGNKAD 138 Query: 123 TRIAQRNFYEIYS--LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + Y+ L E ISA+++ L I + P P E+ + Sbjct: 139 AARYPEAALQAYAELLPGLETRMISAQNERDAKALRDEILSLL----PEGPFFFPEDYAK 194 Query: 181 NEESPKE 187 +++P+E Sbjct: 195 GDQTPEE 201 Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust. Identities = 43/169 (25%), Positives = 74/169 (43%), Gaps = 9/169 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +AVVG+PNVGKSTL+N +LG + TR V N I DT G + S Sbjct: 20 VAVVGKPNVGKSTLVNTMLGVKIAPISPKPQTTRKRVRGIHTEGNRQIVFVDTPGWHEAS 79 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSV--FNTGHAVVLALNK 323 ++L + +++ +++ + L+D P +D + ++ ++L NK Sbjct: 80 ---DALSEYMIRQITEALAEVNLVLWLVDLRHPPTHEDELVARALRPMKDQVPIILVGNK 136 Query: 324 WDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVL 372 D LQ + LP + I+ + R + L D ++S+L Sbjct: 137 ADAARYPEAALQAY----AELLPGLETRMISAQNERDAKALRDEILSLL 181 >gi|256545944|ref|ZP_05473299.1| tRNA modification GTPase TrmE [Anaerococcus vaginalis ATCC 51170] gi|256398366|gb|EEU11988.1| tRNA modification GTPase TrmE [Anaerococcus vaginalis ATCC 51170] Length = 454 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 55/171 (32%), Positives = 84/171 (49%), Gaps = 6/171 (3%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 I+G PNVGKS+L N L+ + A+V + PG TRD + + + I DTAGI + + Sbjct: 225 IIGKPNVGKSSLLNVLLNENRAIVTDIPGTTRDSITEYINLGNLTLKINDTAGIRETHDE 284 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 + ELA +A LI+ + D + D I L+ KN II+ +D++I+ Sbjct: 285 VEKIGVQRSKELA-EDADLIIAIFDRSRKLDHEDKMILDMLKGKNAIIILNKIDLDSKIS 343 Query: 127 QRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 + +F + + +I+E S G +L IF IF K N MI N Sbjct: 344 KIDFDDSF-----KIIETSMVSRDGVDKLEGAIFDIFDSKELNKESLMITN 389 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 49/160 (30%), Positives = 81/160 (50%), Gaps = 18/160 (11%) Query: 182 EESPKENITSEGKSSVKNISKPLRIA-------------VVGRPNVGKSTLINRLLGYNR 228 E+ P +NI + + ISK L A ++G+PNVGKS+L+N LL NR Sbjct: 186 EDLPVDNIIDFMQKAYDEISKLLATANKGKLVKDGIETTIIGKPNVGKSSLLNVLLNENR 245 Query: 229 LLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCET 288 + G TRDS++ N N ++I DTAG+R+ + +E+ V++S + + Sbjct: 246 AIVTDIPGTTRDSITEYINLGNLTLKINDTAGIRETH---DEVEKIGVQRSKELAEDADL 302 Query: 289 TIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVS 328 I + D + + +D I+D + G ++ LNK D+ S Sbjct: 303 IIAIFDRSRKLDHEDKMILDML--KGKNAIIILNKIDLDS 340 >gi|18075567|emb|CAD11179.1| GTP-binding protein [Helicobacter pylori] gi|18075569|emb|CAD11180.1| GTP-binding protein [Helicobacter pylori] gi|122702793|emb|CAL88586.1| GTPase [Helicobacter pylori] gi|122702813|emb|CAL88596.1| GTPase [Helicobacter pylori] Length = 170 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 51/156 (32%), Positives = 82/156 (52%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+L NRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLLNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISAL 158 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L+NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLLNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|108763403|ref|YP_631947.1| GTP-binding protein Era [Myxococcus xanthus DK 1622] gi|108467283|gb|ABF92468.1| GTP-binding protein Era [Myxococcus xanthus DK 1622] Length = 314 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 81/164 (49%), Gaps = 12/164 (7%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 A++G PNVGKSTL N L +K+A+V P TR+R+ G +DT GI K Sbjct: 13 ALIGRPNVGKSTLLNALTGEKIAIVSPKPQTTRNRILGVVTRPEGQVAFIDTPGIHQAKG 72 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAG----ITPYDHAITSFLRKKNIPIIIVSNKM 121 + + M + A E L+LFLI+ A ++P + AI L+K P +V NK+ Sbjct: 73 -ELNRYMVEVALQAAEEVDLVLFLIEPPASEKPEVSPGNRAILDRLQKIGKPTFLVINKI 131 Query: 122 DTRIAQRNFYEIYSL-----DFKEIVEISAEHDLGTSEL-HSVI 159 D+ + + + L F E+V ISA G L H+V+ Sbjct: 132 DS-VPKSQLLPLIDLYRQEFPFAEVVPISAREKDGVERLFHTVL 174 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 44/172 (25%), Positives = 76/172 (44%), Gaps = 16/172 (9%) Query: 207 AVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSR 266 A++GRPNVGKSTL+N L G + + TR+ + + DT G+ + Sbjct: 13 ALIGRPNVGKSTLLNALTGEKIAIVSPKPQTTRNRILGVVTRPEGQVAFIDTPGIHQ--- 69 Query: 267 ITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLR-----IVDSVFNTGHAVVLAL 321 L + V+ ++Q+ + + L++ EK ++ I+D + G L + Sbjct: 70 AKGELNRYMVEVALQAAEEVDLVLFLIEPPA-SEKPEVSPGNRAILDRLQKIGKPTFLVI 128 Query: 322 NKWDMV-SDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVL 372 NK D V +L L DL + + + IS R +G++ L +VL Sbjct: 129 NKIDSVPKSQLLPLIDLYRQ------EFPFAEVVPISAREKDGVERLFHTVL 174 >gi|82538832|ref|XP_723850.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL] gi|23478287|gb|EAA15415.1| small GTP-binding protein domain, putative [Plasmodium yoelii yoelii] Length = 788 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 69/288 (23%), Positives = 137/288 (47%), Gaps = 21/288 (7%) Query: 190 TSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRL-------LTGSQSGITRDSV 242 T+ + + +N +++ ++G N GK+TLI +L N + L G + + + Sbjct: 495 TNSTEYNSENKESEIKVCILGEKNCGKTTLIETVLKKNIINENDIYELFGKKRKYVNEDM 554 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRI-TESLEQKTVKKSMQSVRTCETTIVLLDA---TIP 298 +I + KN I I DT ++K + E L + ++R + I + +A I Sbjct: 555 NIIY--KNQKITILDTCSLKKQHKFRNEDLFYDEENRVYNNIRKSDICIYIKEAKDNNIC 612 Query: 299 FEKQDLRIVDSVFNTGHAVVLALNKWDM-VSDKLNLLQDLRTKAIKNLPQ-IGDIYINTI 356 K D +++ + ++ ++K D+ V+D ++ R++ +K++ DI + + Sbjct: 613 LNKDDKKMLFYLLKEKKNIIFIVSKIDLIVTD----YENKRSEFLKSITNTFSDIPVLFL 668 Query: 357 SGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWL-QKTQLQNPPPTIFNRYNRLKYITQ 415 + ++ L+ + INK I+TS LN +L Q T+L P P + + K+I Q Sbjct: 669 NNNNDSHVNSLLKLITYINKRNNITISTSTLNLFLIQFTKLF-PIPWLKKQKCNFKFIKQ 727 Query: 416 IQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSS 463 I+ +P +FLIF IP +Y + +L+ F L + I+ F+++ Sbjct: 728 IRQNPITFLIFTNLYKNIPNNYLTFFKKKLKDQFDLKYVNIQFVFKTT 775 >gi|219670281|ref|YP_002460716.1| GTP-binding protein Era [Desulfitobacterium hafniense DCB-2] gi|219540541|gb|ACL22280.1| GTP-binding protein Era [Desulfitobacterium hafniense DCB-2] Length = 303 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 51/165 (30%), Positives = 85/165 (51%), Gaps = 12/165 (7%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 + VVGRPN GKSTL+N+LLG L+ + TR+ + + + DT G+ KP Sbjct: 15 VTVVGRPNAGKSTLLNQLLGQKILIMSDKPQTTRNKIHCILTEERGQVVFLDTPGIHKPK 74 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + V +++S+R + + ++D T F + I++++ + +L LNK D Sbjct: 75 H---KLGEFMVDSALESLREVDLILYMVDTTAEFGAGEEYILENLKHVKTPCILLLNKID 131 Query: 326 MVS-DKLNLLQDLRTKAIKNLPQIGD-IYINTISGRTGEGLDDLM 368 ++ DKL K IK+ + D + I IS +TGE D+L+ Sbjct: 132 LIEKDKL-------LKLIKDYSALKDFLAILPISAKTGENKDELL 169 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 69/233 (29%), Positives = 115/233 (49%), Gaps = 31/233 (13%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLY-------GQAIINGVIFNIVDT 57 + +VG PN GKSTL N+L+ +K+ ++ + P TR++++ GQ V+F +DT Sbjct: 15 VTVVGRPNAGKSTLLNQLLGQKILIMSDKPQTTRNKIHCILTEERGQ-----VVF--LDT 67 Query: 58 AGIADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIV 117 GI K+ + + M D ++ E LIL+++D+ A + I L+ P I++ Sbjct: 68 PGIHKPKH-KLGEFMVDSALESLREVDLILYMVDTTAEFGAGEEYILENLKHVKTPCILL 126 Query: 118 SNKMDTRIAQRNFYEI---YSL--DFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPL 172 NK+D I + ++ YS DF I+ ISA+ EL +IFK + P P+ Sbjct: 127 LNKIDL-IEKDKLLKLIKDYSALKDFLAILPISAKTGENKDELLKLIFK----EMPQGPM 181 Query: 173 EMIENNKRNEESPKENITSE-GKSSVKNISK---PLRIAVVGRPNVGKSTLIN 221 E+ ++ P+ I +E + V +++ P IAVV K TLI Sbjct: 182 YYPEDEVTDQ--PERFIMAELVREKVLQLTRDEVPHSIAVVVESVEEKKTLIK 232 >gi|284049397|ref|YP_003399736.1| tRNA modification GTPase TrmE [Acidaminococcus fermentans DSM 20731] gi|283953618|gb|ADB48421.1| tRNA modification GTPase TrmE [Acidaminococcus fermentans DSM 20731] Length = 457 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 89/165 (53%), Gaps = 11/165 (6%) Query: 167 YPNHPLEMIENNKRN---EESPK--ENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLIN 221 YP +E + ++ EE K E + G + + + + LR A+VGRPNVGKS+L+N Sbjct: 179 YPEDDIEEVTYDRTVSTLEEGKKAVETLVRRGTAG-RILREGLRTAIVGRPNVGKSSLLN 237 Query: 222 RLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQ 281 LL +R + + G TRD + P+ + DTAG+R S + E + V++S Sbjct: 238 SLLQADRAIVSNIPGTTRDIIEEQMTIGGIPLVLTDTAGLRDTSDLVEKI---GVERSRA 294 Query: 282 SVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 ++ + +V+LD + P + +D ++++S+ + ++ +NK D+ Sbjct: 295 ALEDAQLALVVLDGSQPLDPEDRQLLESLRDRKKLIL--VNKADL 337 Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 44/121 (36%), Positives = 67/121 (55%), Gaps = 3/121 (2%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AIVG PNVGKS+L N L++ A+V N PG TRD + Q I G+ + DTAG+ D + Sbjct: 223 AIVGRPNVGKSSLLNSLLQADRAIVSNIPGTTRDIIEEQMTIGGIPLVLTDTAGLRDTSD 282 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 + K +++ A+ +A L L ++D + P D + LR + I++ NK D + Sbjct: 283 L-VEKIGVERSRAALEDAQLALVVLDGSQPLDPEDRQLLESLRDRKKLILV--NKADLPL 339 Query: 126 A 126 A Sbjct: 340 A 340 >gi|227328580|ref|ZP_03832604.1| GTP-binding protein Era [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 301 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 51/176 (28%), Positives = 88/176 (50%), Gaps = 6/176 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N+L+ +K+++ P TR R+ G VDT G+ + Sbjct: 11 VAIVGRPNVGKSTLLNQLLGQKISITSRKPQTTRHRIMGIHTEGPYQAIYVDTPGLHIEE 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD-- 122 +I + MN +I + LI+F+++ D + + LR + +P+++ NK+D Sbjct: 71 KRAINRLMNRAASSSIGDVELIIFVVEG-THWNDDDEMVLNKLRDQKLPVLLAINKVDNV 129 Query: 123 ---TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 T++ + +DF ++V ISAE + S++ K Q + P + I Sbjct: 130 TDKTKLLPHIQFLSQQMDFLDVVPISAEKGTNVDTIASIVRKHLPQATHHFPEDYI 185 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 41/130 (31%), Positives = 65/130 (50%), Gaps = 5/130 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMR-KP 264 +A+VGRPNVGKSTL+N+LLG +T + TR + + DT G+ + Sbjct: 11 VAIVGRPNVGKSTLLNQLLGQKISITSRKPQTTRHRIMGIHTEGPYQAIYVDTPGLHIEE 70 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 R L + S+ V E I +++ T + D +++ + + V+LA+NK Sbjct: 71 KRAINRLMNRAASSSIGDV---ELIIFVVEGT-HWNDDDEMVLNKLRDQKLPVLLAINKV 126 Query: 325 DMVSDKLNLL 334 D V+DK LL Sbjct: 127 DNVTDKTKLL 136 >gi|218547906|ref|YP_002381697.1| GTP-binding protein Era [Escherichia fergusonii ATCC 35469] gi|226741215|sp|B7LUZ8|ERA_ESCF3 RecName: Full=GTPase Era gi|218355447|emb|CAQ88056.1| membrane-associated, 16S rRNA-binding GTPase [Escherichia fergusonii ATCC 35469] gi|323968014|gb|EGB63426.1| GTP-binding protein Era [Escherichia coli M863] gi|323978404|gb|EGB73489.1| GTP-binding protein Era [Escherichia coli TW10509] gi|324113093|gb|EGC07069.1| GTP-binding protein Era [Escherichia fergusonii B253] gi|327252276|gb|EGE63948.1| GTP-binding protein Era [Escherichia coli STEC_7v] Length = 301 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 51/178 (28%), Positives = 88/178 (49%), Gaps = 6/178 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N+L+ +K+++ TR R+ G VDT G+ + Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN +I + L++F+++ TP D + + LR P+I+ NK+D Sbjct: 71 KRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLRDGKAPVILAVNKVDNV 129 Query: 125 IAQRNF-----YEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 + + + ++F +IV ISAE L + +++ K + + P + I + Sbjct: 130 QEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPEATHHFPEDYITD 187 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 52/167 (31%), Positives = 84/167 (50%), Gaps = 9/167 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS-VSISWNWKNHPIEIFDTAGMRKP 264 IA+VGRPNVGKSTL+N+LLG +T ++ TR V I I + DT G+ Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYV-DTPGLHME 69 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 + ++ + K + S+ E I +++ T + D +++ + + V+LA+NK Sbjct: 70 EK--RAINRLMNKAASSSIGDVELVIFVVEGT-RWTPDDEMVLNKLRDGKAPVILAVNKV 126 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSV 371 D V +K +LL L+ A Q+ + I IS TG +D + V Sbjct: 127 DNVQEKADLLPHLQFLA----SQMNFLDIVPISAETGLNVDTIAAIV 169 >gi|159899958|ref|YP_001546205.1| tRNA modification GTPase TrmE [Herpetosiphon aurantiacus ATCC 23779] gi|159892997|gb|ABX06077.1| tRNA modification GTPase TrmE [Herpetosiphon aurantiacus ATCC 23779] Length = 454 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 41/117 (35%), Positives = 69/117 (58%), Gaps = 3/117 (2%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 A+VG PN GKS+L N L++ + A+V PG TRD L A + G+ ++DTAGI + + Sbjct: 220 ALVGRPNAGKSSLMNALLRTERAIVTAIPGTTRDTLEETANLGGIPVVLIDTAGITETDD 279 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + + +++ A+++A L+L LID ++P D AI ++ P I+++ K D Sbjct: 280 V-VERIGVERSRAALSKADLVLLLIDGSQPLSPEDLAIAQLTHER--PTIVIATKAD 333 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 34/103 (33%), Positives = 58/103 (56%), Gaps = 3/103 (2%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP 264 R A+VGRPN GKS+L+N LL R + + G TRD++ + N P+ + DTAG+ + Sbjct: 218 RAALVGRPNAGKSSLMNALLRTERAIVTAIPGTTRDTLEETANLGGIPVVLIDTAGITET 277 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIV 307 + E + V++S ++ + ++L+D + P +DL I Sbjct: 278 DDVVERI---GVERSRAALSKADLVLLLIDGSQPLSPEDLAIA 317 >gi|254302672|ref|ZP_04970030.1| GTP-binding protein [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148322864|gb|EDK88114.1| GTP-binding protein [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 296 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 42/125 (33%), Positives = 73/125 (58%), Gaps = 4/125 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IAVVGRPNVGKSTLIN+L+ + ++G TRD++ N+K++ DT G+ KP Sbjct: 6 IAVVGRPNVGKSTLINKLVSEKVAIVSDKAGTTRDNIKGILNFKDNQYIFIDTPGIHKPQ 65 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSV-FNTGHAVVLALNKW 324 + L + +++ ++ + + L+DA+ P D+ ++D + N+ +L +NK Sbjct: 66 HL---LGEYMTNIAVKILKDVDIILFLIDASKPIGTGDMFVMDRINENSKKPRILLVNKV 122 Query: 325 DMVSD 329 D++SD Sbjct: 123 DLISD 127 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 41/119 (34%), Positives = 66/119 (55%), Gaps = 2/119 (1%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTL N+LV +K+A+V + G TRD + G + +DT GI + Sbjct: 6 IAVVGRPNVGKSTLINKLVSEKVAIVSDKAGTTRDNIKGILNFKDNQYIFIDTPGIHKPQ 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKN-IPIIIVSNKMD 122 + + + M + + + +ILFLID+ I D + + + + P I++ NK+D Sbjct: 66 HL-LGEYMTNIAVKILKDVDIILFLIDASKPIGTGDMFVMDRINENSKKPRILLVNKVD 123 >gi|326389849|ref|ZP_08211413.1| GTP-binding protein Era [Thermoanaerobacter ethanolicus JW 200] gi|325994117|gb|EGD52545.1| GTP-binding protein Era [Thermoanaerobacter ethanolicus JW 200] Length = 302 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 49/148 (33%), Positives = 82/148 (55%), Gaps = 9/148 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG NVGKSTL N ++++K+A+ P TR+ ++G + VDT GI K Sbjct: 8 VALVGRTNVGKSTLLNAILQEKIAITSPKPQTTRNTIHGILTTDEYQVIFVDTPGIHKPK 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +++ M + + + E LIL++I+ + P D I L++ + P+I+V NK+D Sbjct: 68 S-KLSEFMIEVAKRTLKEVDLILYMIEPDTEVGPGDRYIIEHLKEVDTPVILVVNKIDLV 126 Query: 125 IAQRN------FYEIYSLDFKEIVEISA 146 +R F E Y +FK++V ISA Sbjct: 127 PEERVEETIKIFKEQY--EFKDVVAISA 152 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 31/126 (24%), Positives = 67/126 (53%), Gaps = 5/126 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP- 264 +A+VGR NVGKSTL+N +L +T + TR+++ + + DT G+ KP Sbjct: 8 VALVGRTNVGKSTLLNAILQEKIAITSPKPQTTRNTIHGILTTDEYQVIFVDTPGIHKPK 67 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 S+++E + ++ + ++++ + + +++ D I++ + V+L +NK Sbjct: 68 SKLSEFM----IEVAKRTLKEVDLILYMIEPDTEVGPGDRYIIEHLKEVDTPVILVVNKI 123 Query: 325 DMVSDK 330 D+V ++ Sbjct: 124 DLVPEE 129 >gi|52841177|ref|YP_094976.1| GTP-binding protein Era [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52628288|gb|AAU27029.1| GTP-binding protein Era [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 311 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 51/165 (30%), Positives = 80/165 (48%), Gaps = 20/165 (12%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTL NR++++K+++ P TR + G F VDT GI G Sbjct: 24 IALVGRPNVGKSTLLNRILQQKLSITSRKPQTTRHSILGIRTEGEFQFVYVDTPGIHQGN 83 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD-- 122 +I + MN + + +I FL+D D + + +++ +P I+V NK+D Sbjct: 84 AKAINRMMNKTAISVLRDVDVIAFLVDG-THWKDEDEYVLNLIKQAKVPCILVVNKVDKI 142 Query: 123 ----------TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHS 157 +I+QR Y+ F I+ +SA+ L EL Sbjct: 143 TDKTQLLPWIEQISQR--YQ-----FAAIIPLSAKTGLQVDELEG 180 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 80/166 (48%), Gaps = 15/166 (9%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA+VGRPNVGKSTL+NR+L +T + TR S+ DT G+ + + Sbjct: 24 IALVGRPNVGKSTLLNRILQQKLSITSRKPQTTRHSILGIRTEGEFQFVYVDTPGIHQGN 83 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +++ + K ++ +R + L+D T ++ +D +++ + +L +NK D Sbjct: 84 --AKAINRMMNKTAISVLRDVDVIAFLVDGT-HWKDEDEYVLNLIKQAKVPCILVVNKVD 140 Query: 326 MVSDKLNLLQDLRTKAIKNLPQIGDIY----INTISGRTGEGLDDL 367 ++DK LL + QI Y I +S +TG +D+L Sbjct: 141 KITDKTQLL--------PWIEQISQRYQFAAIIPLSAKTGLQVDEL 178 >gi|262066862|ref|ZP_06026474.1| tRNA modification GTPase TrmE [Fusobacterium periodonticum ATCC 33693] gi|291379413|gb|EFE86931.1| tRNA modification GTPase TrmE [Fusobacterium periodonticum ATCC 33693] Length = 455 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 86/156 (55%), Gaps = 7/156 (4%) Query: 171 PLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLL 230 P +++N K+ K+ I+S K + I ++ A++G+PNVGKS+++N LL +R + Sbjct: 189 PENLVDNLKKASAEIKDLISSYDKGKI--IKDGIKTAIIGKPNVGKSSILNSLLREDRAI 246 Query: 231 TGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTI 290 G TRD + N P+ + DTAG+R I E++ V+KS + + + + + Sbjct: 247 VTHIPGTTRDIIEEVININGIPLLLVDTAGIRNTDDIVENI---GVEKSKELINSADLIL 303 Query: 291 VLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 ++D + +++D RI D + NT V+ LNK D+ Sbjct: 304 YVIDTSREIDEEDFRIYD-IINT-DKVIGILNKIDI 337 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 59/183 (32%), Positives = 93/183 (50%), Gaps = 13/183 (7%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS++ N L+++ A+V + PG TRD + ING+ +VDTAGI + + Sbjct: 223 AIIGKPNVGKSSILNSLLREDRAIVTHIPGTTRDIIEEVININGIPLLLVDTAGIRNTDD 282 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 + EL IN A LIL++ID+ I D I + +I + NK+D + Sbjct: 283 IVENIGVEKSKEL-INSADLILYVIDTSREIDEEDFRIYDIINTD--KVIGILNKIDIK- 338 Query: 126 AQRNFYEIYSLDFKEI---VEISAEHDLGTSELHSVIFK-IFKQKYPNHPLEMIENNKRN 181 EI F +I +EISA +G L I+K I + + +++ N R+ Sbjct: 339 -----KEIDLSKFPKIDKWIEISALSKIGIDNLEDQIYKYIMNENVEDSSQKLVITNVRH 393 Query: 182 EES 184 + + Sbjct: 394 KSA 396 >gi|205829164|sp|Q6APY7|MNME_DESPS RecName: Full=tRNA modification GTPase mnmE Length = 467 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 44/173 (25%), Positives = 91/173 (52%), Gaps = 11/173 (6%) Query: 202 KPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGM 261 + + + + GRPNVGKS+L+N +L R L S +G TRDS+ + P+ I DTAG+ Sbjct: 224 QGISMVIAGRPNVGKSSLLNAVLQEERALVTSIAGTTRDSIEEMVDILGMPVRIVDTAGI 283 Query: 262 RKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLAL 321 R+ + E+L ++++ + + + + ++D + ++ DL + + + + ++ + Sbjct: 284 RRQAGEVEAL---GIQRAKDLINSADLVLFMVDGSRQLDQSDLELYEDIAH--KPMIAVI 338 Query: 322 NKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEI 374 NK D++++ L ++P++ IS R GEGL+ L ++ + Sbjct: 339 NKLDLLAEDGTAAAALLDFVPASVPRL------AISAREGEGLEALKQAIFTV 385 Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 53/163 (32%), Positives = 79/163 (48%), Gaps = 8/163 (4%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 ++ I G PNVGKS+L N +++++ A+V + G TRD + I G+ IVDTAGI Sbjct: 227 SMVIAGRPNVGKSSLLNAVLQEERALVTSIAGTTRDSIEEMVDILGMPVRIVDTAGIRRQ 286 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 A + +L IN A L+LF++D + D + + K P+I V NK+D Sbjct: 287 AGEVEALGIQRAKDL-INSADLVLFMVDGSRQLDQSDLELYEDIAHK--PMIAVINKLDL 343 Query: 124 RIAQRNFYEIYSLDFKEI----VEISAEHDLGTSELHSVIFKI 162 +A+ LDF + ISA G L IF + Sbjct: 344 -LAEDGTAAAALLDFVPASVPRLAISAREGEGLEALKQAIFTV 385 >gi|319938848|ref|ZP_08013212.1| tRNA modification GTPase mnmE [Streptococcus anginosus 1_2_62CV] gi|319811898|gb|EFW08164.1| tRNA modification GTPase mnmE [Streptococcus anginosus 1_2_62CV] Length = 457 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 40/120 (33%), Positives = 74/120 (61%), Gaps = 5/120 (4%) Query: 207 AVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSR 266 A++GRPNVGKS+L+N LL ++ + +G TRD + N P+++ DTAG+R Sbjct: 227 AIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRDTDD 286 Query: 267 ITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 I +EQ V++S ++++ + +++L+A+ P +QD ++++ +T +L LNK D+ Sbjct: 287 I---VEQIGVERSKKALQDADLVLLVLNASEPLTEQDRKLLEISQDTNR--ILLLNKTDL 341 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 41/118 (34%), Positives = 70/118 (59%), Gaps = 5/118 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+++ A+V + G TRD + INGV ++DTAGI D + Sbjct: 227 AIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRDTDD 286 Query: 66 CSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 I +Q+ ++++ A+ +A L+L ++++ +T D + + N I++ NK D Sbjct: 287 --IVEQIGVERSKKALQDADLVLLVLNASEPLTEQDRKLLEISQDTN--RILLLNKTD 340 >gi|331648312|ref|ZP_08349401.1| GTP-binding protein Era [Escherichia coli M605] gi|330912335|gb|EGH40845.1| GTP-binding protein Era [Escherichia coli AA86] gi|331042861|gb|EGI15002.1| GTP-binding protein Era [Escherichia coli M605] Length = 301 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 51/171 (29%), Positives = 86/171 (50%), Gaps = 7/171 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N+L+ +K+++ TR R+ G VDT G+ + Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN +I + L++F+++ TP D + + LR P+I+ NK+D Sbjct: 71 KRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLRDGKAPVILAVNKVDNV 129 Query: 125 IAQRNF-----YEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNH 170 + + + ++F +IV ISAE L + +++ K + P+H Sbjct: 130 QEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPEA-PHH 179 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 52/167 (31%), Positives = 84/167 (50%), Gaps = 9/167 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS-VSISWNWKNHPIEIFDTAGMRKP 264 IA+VGRPNVGKSTL+N+LLG +T ++ TR V I I + DT G+ Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYV-DTPGLHME 69 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 + ++ + K + S+ E I +++ T + D +++ + + V+LA+NK Sbjct: 70 EK--RAINRLMNKAASSSIGDVELVIFVVEGT-RWTPDDEMVLNKLRDGKAPVILAVNKV 126 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSV 371 D V +K +LL L+ A Q+ + I IS TG +D + V Sbjct: 127 DNVQEKADLLPHLQFLA----SQMNFLDIVPISAETGLNVDTIAAIV 169 >gi|122700641|emb|CAL87909.1| GTPase [Helicobacter pylori] Length = 170 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 51/156 (32%), Positives = 82/156 (52%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKTAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERAYAFSSFGAPKSFNISVSHNRGISAL 158 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKTAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|54296963|ref|YP_123332.1| GTP-binding protein Era [Legionella pneumophila str. Paris] gi|53750748|emb|CAH12155.1| hypothetical protein lpp1004 [Legionella pneumophila str. Paris] Length = 311 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 51/165 (30%), Positives = 80/165 (48%), Gaps = 20/165 (12%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTL NR++++K+++ P TR + G F VDT GI G Sbjct: 24 IALVGRPNVGKSTLLNRILQQKLSITSRKPQTTRHSILGIRTEGEFQFVYVDTPGIHQGN 83 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD-- 122 +I + MN + + +I FL+D D + + +++ +P I+V NK+D Sbjct: 84 AKAINRMMNKTAISVLRDVDVIAFLVDG-THWKDEDEYVLNLIKQAKVPCILVVNKVDKI 142 Query: 123 ----------TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHS 157 +I+QR Y+ F I+ +SA+ L EL Sbjct: 143 TDKTQLLPWIEQISQR--YQ-----FAAIIPLSAKTGLQVDELEG 180 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 80/166 (48%), Gaps = 15/166 (9%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA+VGRPNVGKSTL+NR+L +T + TR S+ DT G+ + + Sbjct: 24 IALVGRPNVGKSTLLNRILQQKLSITSRKPQTTRHSILGIRTEGEFQFVYVDTPGIHQGN 83 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +++ + K ++ +R + L+D T ++ +D +++ + +L +NK D Sbjct: 84 --AKAINRMMNKTAISVLRDVDVIAFLVDGT-HWKDEDEYVLNLIKQAKVPCILVVNKVD 140 Query: 326 MVSDKLNLLQDLRTKAIKNLPQIGDIY----INTISGRTGEGLDDL 367 ++DK LL + QI Y I +S +TG +D+L Sbjct: 141 KITDKTQLL--------PWIEQISQRYQFAAIIPLSAKTGLQVDEL 178 >gi|315222529|ref|ZP_07864418.1| tRNA modification GTPase TrmE [Streptococcus anginosus F0211] gi|315188215|gb|EFU21941.1| tRNA modification GTPase TrmE [Streptococcus anginosus F0211] Length = 457 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 40/120 (33%), Positives = 74/120 (61%), Gaps = 5/120 (4%) Query: 207 AVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSR 266 A++GRPNVGKS+L+N LL ++ + +G TRD + N P+++ DTAG+R Sbjct: 227 AIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRDTDD 286 Query: 267 ITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 I +EQ V++S ++++ + +++L+A+ P +QD ++++ +T +L LNK D+ Sbjct: 287 I---VEQIGVERSKKALQDADLVLLVLNASEPLTEQDRKLLEISQDTNR--ILLLNKTDL 341 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 41/118 (34%), Positives = 70/118 (59%), Gaps = 5/118 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+++ A+V + G TRD + INGV ++DTAGI D + Sbjct: 227 AIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRDTDD 286 Query: 66 CSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 I +Q+ ++++ A+ +A L+L ++++ +T D + + N I++ NK D Sbjct: 287 --IVEQIGVERSKKALQDADLVLLVLNASEPLTEQDRKLLEISQDTN--RILLLNKTD 340 >gi|73541938|ref|YP_296458.1| GTP-binding protein Era [Ralstonia eutropha JMP134] gi|72119351|gb|AAZ61614.1| Small GTP-binding protein domain:GTP-binding:GTP-binding protein Era [Ralstonia eutropha JMP134] Length = 311 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 53/173 (30%), Positives = 84/173 (48%), Gaps = 13/173 (7%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AIVG PNVGKSTL N LV +K+++ TR RL G + + VDT G Sbjct: 23 TVAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRLVGIQTTDDAQYVFVDTPGFQTR 82 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 ++ + +N ++ L+LF+++ AG D L KN P+++V+NK+D Sbjct: 83 HASALNRSLNRAVTSTLSSVDLVLFVVE--AGYYGADDEKVLALLPKNTPVLLVTNKLDR 140 Query: 124 RIAQRN-----FYEIYS--LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPN 169 R F E F+E+V +SA+ T + + +F+I + P Sbjct: 141 VTDDRAGVMMPFLEKMGQLFPFREVVPMSAK----TRDHIARLFEIIRPYLPE 189 Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust. Identities = 39/126 (30%), Positives = 58/126 (46%), Gaps = 8/126 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGM--RK 263 +A+VGRPNVGKSTL+N L+G +T ++ TR + + DT G R Sbjct: 24 VAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRLVGIQTTDDAQYVFVDTPGFQTRH 83 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 S + SL + V ++ SV +VL + D V ++ V+L NK Sbjct: 84 ASALNRSL-NRAVTSTLSSV-----DLVLFVVEAGYYGADDEKVLALLPKNTPVLLVTNK 137 Query: 324 WDMVSD 329 D V+D Sbjct: 138 LDRVTD 143 >gi|152990747|ref|YP_001356469.1| GTP-binding protein Era [Nitratiruptor sp. SB155-2] gi|151422608|dbj|BAF70112.1| GTP-binding protein Era [Nitratiruptor sp. SB155-2] Length = 293 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 59/176 (33%), Positives = 88/176 (50%), Gaps = 21/176 (11%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PN GKSTL N L+ +K+A+V + TR RLY + +DT G+ + K Sbjct: 9 VALVGRPNAGKSTLLNWLLGEKIAMVSHKAQATRKRLYAIVMHGNDQIVFIDTPGLHE-K 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLR-KKNIPIIIVSNKMDT 123 + K M ++ AI + LILFL IT Y+ FL+ KN P I+V K+D Sbjct: 68 ERLLNKFMLEEAIKAIGDCDLILFLAPVTDPITHYE----KFLKLAKNRPHIVVLTKIDM 123 Query: 124 --------RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHP 171 +IA+ Y+ + F E+V +S + D+G +L I + P HP Sbjct: 124 VSNEKLLQKIAE---YQKFQDQFLELVPVSVKKDIGKKDLLDTIVRYL----PEHP 172 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 68/132 (51%), Gaps = 7/132 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VGRPN GKSTL+N LLG + ++ TR + N I DT G+ + Sbjct: 9 VALVGRPNAGKSTLLNWLLGEKIAMVSHKAQATRKRLYAIVMHGNDQIVFIDTPGLHEKE 68 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 R+ L + ++++++++ C+ + L T P + + + N H VV L K D Sbjct: 69 RL---LNKFMLEEAIKAIGDCDLILFLAPVTDPITHYE-KFLKLAKNRPHIVV--LTKID 122 Query: 326 MVSDKLNLLQDL 337 MVS++ LLQ + Sbjct: 123 MVSNE-KLLQKI 133 >gi|226328141|ref|ZP_03803659.1| hypothetical protein PROPEN_02032 [Proteus penneri ATCC 35198] gi|225203845|gb|EEG86199.1| hypothetical protein PROPEN_02032 [Proteus penneri ATCC 35198] Length = 170 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 47/148 (31%), Positives = 77/148 (52%), Gaps = 6/148 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N+L+ +K+++ P TR R+ G VDT G+ + Sbjct: 11 IAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGIDTDGAYQAIYVDTPGLHIEE 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN +I + L++F+++ TP D + + L+ P+++ NK+D Sbjct: 71 KRAINRLMNRAASSSIGDVELVIFVVEG-TNWTPDDEMVLNKLKSLRCPVLLAINKVDNV 129 Query: 125 IAQRNF-----YEIYSLDFKEIVEISAE 147 I + + +DF ++V ISAE Sbjct: 130 IDKTKLLPHIGFLSQQMDFLDVVPISAE 157 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 44/131 (33%), Positives = 67/131 (51%), Gaps = 7/131 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV-SISWNWKNHPIEIFDTAGMR-K 263 IA+VGRPNVGKSTL+N+LLG +T + TR + I + I + DT G+ + Sbjct: 11 IAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGIDTDGAYQAIYV-DTPGLHIE 69 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 R L + S+ V E I +++ T + D +++ + + V+LA+NK Sbjct: 70 EKRAINRLMNRAASSSIGDV---ELVIFVVEGT-NWTPDDEMVLNKLKSLRCPVLLAINK 125 Query: 324 WDMVSDKLNLL 334 D V DK LL Sbjct: 126 VDNVIDKTKLL 136 >gi|169351641|ref|ZP_02868579.1| hypothetical protein CLOSPI_02422 [Clostridium spiroforme DSM 1552] gi|169291863|gb|EDS73996.1| hypothetical protein CLOSPI_02422 [Clostridium spiroforme DSM 1552] Length = 444 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 45/119 (37%), Positives = 67/119 (56%), Gaps = 3/119 (2%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 I+G PNVGKS+L N L++++ A+V N G TRD + G I+G++ N++DTAGI + + Sbjct: 222 IIGKPNVGKSSLLNALLQEEKAIVTNIAGTTRDIVEGSISIDGIVLNMIDTAGIRETDDI 281 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 + + EL IN+A L+L +ID + D + N IIV NK D I Sbjct: 282 IESMGVEKSKEL-INQADLVLLVIDGSLKLDQGDQELLELTNDSN--RIIVLNKADQGI 337 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 75/130 (57%), Gaps = 5/130 (3%) Query: 196 SVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEI 255 ++K + + ++ ++G+PNVGKS+L+N LL + + + +G TRD V S + + + Sbjct: 210 NIKLVKEGIKTVIIGKPNVGKSSLLNALLQEEKAIVTNIAGTTRDIVEGSISIDGIVLNM 269 Query: 256 FDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGH 315 DTAG+R+ I ES+ V+KS + + + ++++D ++ ++ D +++ ++ Sbjct: 270 IDTAGIRETDDIIESM---GVEKSKELINQADLVLLVIDGSLKLDQGDQELLELTNDSNR 326 Query: 316 AVVLALNKWD 325 +V LNK D Sbjct: 327 IIV--LNKAD 334 >gi|194467398|ref|ZP_03073385.1| tRNA modification GTPase TrmE [Lactobacillus reuteri 100-23] gi|194454434|gb|EDX43331.1| tRNA modification GTPase TrmE [Lactobacillus reuteri 100-23] Length = 462 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 58/177 (32%), Positives = 90/177 (50%), Gaps = 12/177 (6%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+ + A+V N G TRD + +NGV ++DTAGI D N Sbjct: 227 AIIGQPNVGKSSLLNSLLHEDKAIVTNVAGTTRDVIEEYVNVNGVPLKLIDTAGIRD-TN 285 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 + K +++ A+ A L+L LIDS +T D+ + + K II+ + ++ Sbjct: 286 DQVEKIGVERSRKALGAADLVLLLIDSSNELTEEDYQLLEATKDKQRIIILNKTDLPRKV 345 Query: 126 AQRNFYEIYSLDFKE-IVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 + E+ SL K ++E S + G +L I +F E IE+N+ N Sbjct: 346 ---DLAELKSLAGKSAVIETSIVNHEGMDQLGEQIGYMFFN-------EGIESNQNN 392 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 35/129 (27%), Positives = 77/129 (59%), Gaps = 5/129 (3%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + L A++G+PNVGKS+L+N LL ++ + + +G TRD + N P+++ D Sbjct: 218 KVLRDGLATAIIGQPNVGKSSLLNSLLHEDKAIVTNVAGTTRDVIEEYVNVNGVPLKLID 277 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R + + +E+ V++S +++ + ++L+D++ ++D +++++ + + Sbjct: 278 TAGIRDTN---DQVEKIGVERSRKALGAADLVLLLIDSSNELTEEDYQLLEATKDKQRII 334 Query: 318 VLALNKWDM 326 + LNK D+ Sbjct: 335 I--LNKTDL 341 >gi|39939233|ref|NP_950999.1| tRNA modification GTPase TrmE [Onion yellows phytoplasma OY-M] gi|81402190|sp|Q6YPI0|MNME_ONYPE RecName: Full=tRNA modification GTPase mnmE gi|39722342|dbj|BAD04832.1| tRNA modification GTPase [Onion yellows phytoplasma OY-M] Length = 460 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 58/224 (25%), Positives = 108/224 (48%), Gaps = 30/224 (13%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + ++ +VGRPNVGKS+L+N L + + SG TRD V +N + + + DTA Sbjct: 216 LKEGIKTLIVGRPNVGKSSLLNAFLNETKAIVSDISGTTRDFVEAYFNCQGITLHLIDTA 275 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+RK + +E+ + ++ + + E +++LD +++D++++ N H ++ Sbjct: 276 GIRKTD---DPIEKIGILRTEKMLLQAELILLVLDQNNHLQEEDIQLLQLTKN--HPRII 330 Query: 320 ALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWK 379 NK D+ SDK L+ L + + PQ ++ ++ L K Sbjct: 331 IGNKADLKSDK--LISSLSNNSSQLAPQ----------------------EIISVSSLDK 366 Query: 380 TRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 T + L+K QL + P FN ++ ++I QIQ + SF Sbjct: 367 TGF-LELQQTILKKFQLNDIQPKDFNYFSNARHINQIQIALRSF 409 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 52/161 (32%), Positives = 77/161 (47%), Gaps = 6/161 (3%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PNVGKS+L N + + A+V + G TRD + G+ +++DTAGI + Sbjct: 224 IVGRPNVGKSSLLNAFLNETKAIVSDISGTTRDFVEAYFNCQGITLHLIDTAGIRKTDD- 282 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD---T 123 I K +TE + +A LIL ++D + D I KN P II+ NK D Sbjct: 283 PIEKIGILRTEKMLLQAELILLVLDQNNHLQEED--IQLLQLTKNHPRIIIGNKADLKSD 340 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFK 164 ++ L +EI+ +S+ G EL I K F+ Sbjct: 341 KLISSLSNNSSQLAPQEIISVSSLDKTGFLELQQTILKKFQ 381 >gi|311031640|ref|ZP_07709730.1| GTP-binding protein Era [Bacillus sp. m3-13] Length = 305 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 47/148 (31%), Positives = 79/148 (53%), Gaps = 9/148 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 ++I+G PNVGKST NR++ +K+A++ + P TR+++ G + +DT GI K Sbjct: 14 VSIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKIQGVFTQDDAQIVFIDTPGIHKPK 73 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + M + + E L+LF+I++K G+ D I L++ + P+ +V NK+D Sbjct: 74 H-KLGDFMMKVAQNTLKEVDLVLFMINAKEGLGKGDEFIIEKLKETSTPVYLVINKIDEV 132 Query: 125 IAQ------RNFYEIYSLDFKEIVEISA 146 + +Y FKEIV ISA Sbjct: 133 HPDDLLPLMETYKALYP--FKEIVPISA 158 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 36/132 (27%), Positives = 66/132 (50%), Gaps = 5/132 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 ++++GRPNVGKST +NR++G + + TR+ + + + I DT G+ KP Sbjct: 14 VSIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKIQGVFTQDDAQIVFIDTPGIHKPK 73 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L +K + +++ + + +++A K D I++ + T V L +NK D Sbjct: 74 H---KLGDFMMKVAQNTLKEVDLVLFMINAKEGLGKGDEFIIEKLKETSTPVYLVINKID 130 Query: 326 MV--SDKLNLLQ 335 V D L L++ Sbjct: 131 EVHPDDLLPLME 142 >gi|153941135|ref|YP_001392222.1| GTP-binding protein Era [Clostridium botulinum F str. Langeland] gi|189037261|sp|A7GHG2|ERA_CLOBL RecName: Full=GTPase Era gi|152937031|gb|ABS42529.1| GTP-binding protein Era [Clostridium botulinum F str. Langeland] gi|295320220|gb|ADG00598.1| GTP-binding protein Era [Clostridium botulinum F str. 230613] Length = 296 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 56/181 (30%), Positives = 93/181 (51%), Gaps = 6/181 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + IVG PNVGKSTL N ++K+K+++V P TR+ + + VDT GI K Sbjct: 7 VTIVGRPNVGKSTLLNAIMKEKLSIVSCRPQTTRNNIQTILTEDNYQLVFVDTPGIHKPK 66 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + + M A+ + L+LFLI+ D I L++ +P+ +V NK+D Sbjct: 67 H-KLGEYMVKSASDAMKDVDLVLFLINPDEKPGRGDLFIIEQLKEVKVPVFLVLNKIDEN 125 Query: 125 IAQR--NFYEIYS--LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEM-IENNK 179 ++ +IYS ++F+EI+ ISA L ++FK + +P +M I+ N+ Sbjct: 126 PQEKVAETLKIYSELMEFEEIIPISALKGKNIDLLKELMFKYIPEGPQYYPEDMIIDQNE 185 Query: 180 R 180 R Sbjct: 186 R 186 Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 33/120 (27%), Positives = 59/120 (49%), Gaps = 3/120 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 + +VGRPNVGKSTL+N ++ + + TR+++ N+ + DT G+ KP Sbjct: 7 VTIVGRPNVGKSTLLNAIMKEKLSIVSCRPQTTRNNIQTILTEDNYQLVFVDTPGIHKPK 66 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + VK + +++ + + L++ + DL I++ + V L LNK D Sbjct: 67 H---KLGEYMVKSASDAMKDVDLVLFLINPDEKPGRGDLFIIEQLKEVKVPVFLVLNKID 123 >gi|241668676|ref|ZP_04756254.1| GTP-binding protein Era [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254877209|ref|ZP_05249919.1| GTP-binding protein [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254843230|gb|EET21644.1| GTP-binding protein [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 297 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 52/163 (31%), Positives = 83/163 (50%), Gaps = 5/163 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 I+I+G PNVGKSTL N ++K K+++ P TR ++ G + F VDT GI + Sbjct: 7 ISIIGRPNVGKSTLLNNILKYKISITSRKPQTTRHQITGIKTLGDTQFIYVDTPGIHIDE 66 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I K MN + E +ILF+++ T + I L+ +PI +V NK+D + Sbjct: 67 PKAINKFMNKAATAMVKEVDVILFVVEL-GKWTELEDNIVEKLKYSQVPIFLVVNKVDKK 125 Query: 125 IAQRNFYEIYS----LDFKEIVEISAEHDLGTSELHSVIFKIF 163 + I S L F +++ +SA+ +EL S I K+ Sbjct: 126 KSLEASMFIESIKEKLSFYDVIYVSAKQGHNVNELESRIEKLL 168 Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust. Identities = 17/38 (44%), Positives = 26/38 (68%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 I+++GRPNVGKSTL+N +L Y +T + TR ++ Sbjct: 7 ISIIGRPNVGKSTLLNNILKYKISITSRKPQTTRHQIT 44 >gi|325295030|ref|YP_004281544.1| GTP-binding protein Era-like-protein [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065478|gb|ADY73485.1| GTP-binding protein Era-like-protein [Desulfurobacterium thermolithotrophum DSM 11699] Length = 306 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 45/121 (37%), Positives = 69/121 (57%), Gaps = 4/121 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKSTL N + K+A+V + P TR R+ G + +DT GI K Sbjct: 13 VAILGRPNVGKSTLLNSFLGTKVAIVTDKPQTTRHRIIGVKHLKDAQIVFLDTPGIHKEK 72 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFL---RKKNIPIIIVSNKM 121 + + MN+ I +A +ILFLID+++G T D I + ++K+ +I+V NK+ Sbjct: 73 -FELNRYMNEIAFGVIPDADIILFLIDARSGFTEVDKKILQKIGEEKRKDTKVIVVINKI 131 Query: 122 D 122 D Sbjct: 132 D 132 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 48/175 (27%), Positives = 79/175 (45%), Gaps = 17/175 (9%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKSTL+N LG + + TR + + K+ I DT G+ K Sbjct: 13 VAILGRPNVGKSTLLNSFLGTKVAIVTDKPQTTRHRIIGVKHLKDAQIVFLDTPGIHKEK 72 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGH---AVVLALN 322 L + + + + + + L+DA F + D +I+ + V++ +N Sbjct: 73 F---ELNRYMNEIAFGVIPDADIILFLIDARSGFTEVDKKILQKIGEEKRKDTKVIVVIN 129 Query: 323 KWDMV--SDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLD---DLMVSVL 372 K D V + L L+ ++ K P + DI +S G LD DL+V L Sbjct: 130 KIDGVPKEELLPLIDEIH----KEFPFVSDIV--PLSATRGTNLDRLLDLLVKYL 178 >gi|153823698|ref|ZP_01976365.1| GTP-binding protein Era [Vibrio cholerae B33] gi|126518786|gb|EAZ76009.1| GTP-binding protein Era [Vibrio cholerae B33] Length = 282 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 50/157 (31%), Positives = 84/157 (53%), Gaps = 8/157 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N L+ +K+++ P TR R+ G VDT G+ + Sbjct: 34 VAIVGRPNVGKSTLLNNLLGQKISITSRKPQTTRHRIMGVETDGNYQAIYVDTPGLHIEE 93 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN ++++ +L+LF+++ T D + + L+K N P+++ NK+D + Sbjct: 94 KRAINRLMNRAASSSLSDVNLVLFVVEG-THWTADDEMVFTKLQKANFPVVLCVNKVD-Q 151 Query: 125 IAQRNFYEIYSLD------FKEIVEISAEHDLGTSEL 155 + RN ++ L+ F +IV ISA+ T L Sbjct: 152 VKDRNEVMLHMLELSKRMQFVDIVPISAKQGKNTDVL 188 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 51/181 (28%), Positives = 77/181 (42%), Gaps = 12/181 (6%) Query: 191 SEGKSSVKNISKPLR---IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWN 247 SEGKS V + + +A+VGRPNVGKSTL+N LLG +T + TR + Sbjct: 16 SEGKSVVASTPENQHCGFVAIVGRPNVGKSTLLNNLLGQKISITSRKPQTTRHRIMGVET 75 Query: 248 WKNHPIEIFDTAGMR-KPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRI 306 N+ DT G+ + R L + S+ V ++ + + D + Sbjct: 76 DGNYQAIYVDTPGLHIEEKRAINRLMNRAASSSLSDV----NLVLFVVEGTHWTADDEMV 131 Query: 307 VDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDD 366 + VVL +NK D V D+ ++ L + Q DI IS + G+ D Sbjct: 132 FTKLQKANFPVVLCVNKVDQVKDRNEVM--LHMLELSKRMQFVDIV--PISAKQGKNTDV 187 Query: 367 L 367 L Sbjct: 188 L 188 >gi|4467675|emb|CAB37789.1| GTP-binding protein homologue [Helicobacter pylori] Length = 170 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 52/161 (32%), Positives = 82/161 (50%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +N ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNAHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ + LIL+++D K+ P D I F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKPAQMSDLILYVVDGKS--IPSDEDIKLFREIFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGIPKSFNISVSHNRGISALIDAIL 163 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNAHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +D+++ +F L +NK Sbjct: 70 LLSKEIKALNLKPAQMS----DLILYVVDGKSIPSD-EDIKLFREIFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|26248931|ref|NP_754971.1| GTP-binding protein Era [Escherichia coli CFT073] gi|74313128|ref|YP_311547.1| GTP-binding protein Era [Shigella sonnei Ss046] gi|82545018|ref|YP_408965.1| GTP-binding protein Era [Shigella boydii Sb227] gi|91211892|ref|YP_541878.1| GTP-binding protein Era [Escherichia coli UTI89] gi|110642728|ref|YP_670458.1| GTP-binding protein Era [Escherichia coli 536] gi|117624787|ref|YP_853700.1| GTP-binding protein Era [Escherichia coli APEC O1] gi|157157884|ref|YP_001463889.1| GTP-binding protein Era [Escherichia coli E24377A] gi|170681506|ref|YP_001744755.1| GTP-binding protein Era [Escherichia coli SMS-3-5] gi|187732790|ref|YP_001881345.1| GTP-binding protein Era [Shigella boydii CDC 3083-94] gi|191167969|ref|ZP_03029771.1| GTP-binding protein Era [Escherichia coli B7A] gi|191174026|ref|ZP_03035543.1| GTP-binding protein Era [Escherichia coli F11] gi|193064069|ref|ZP_03045154.1| GTP-binding protein Era [Escherichia coli E22] gi|193068335|ref|ZP_03049298.1| GTP-binding protein Era [Escherichia coli E110019] gi|194429262|ref|ZP_03061789.1| GTP-binding protein Era [Escherichia coli B171] gi|194432158|ref|ZP_03064447.1| GTP-binding protein Era [Shigella dysenteriae 1012] gi|209920045|ref|YP_002294129.1| GTP-binding protein Era [Escherichia coli SE11] gi|215487910|ref|YP_002330341.1| GTP-binding protein Era [Escherichia coli O127:H6 str. E2348/69] gi|218555147|ref|YP_002388060.1| GTP-binding protein Era [Escherichia coli IAI1] gi|218559487|ref|YP_002392400.1| GTP-binding protein Era [Escherichia coli S88] gi|218690682|ref|YP_002398894.1| GTP-binding protein Era [Escherichia coli ED1a] gi|218696194|ref|YP_002403861.1| GTP-binding protein Era [Escherichia coli 55989] gi|218701080|ref|YP_002408709.1| GTP-binding protein Era [Escherichia coli IAI39] gi|218706070|ref|YP_002413589.1| GTP-binding protein Era [Escherichia coli UMN026] gi|227887602|ref|ZP_04005407.1| GTP-binding protein Era [Escherichia coli 83972] gi|237705076|ref|ZP_04535557.1| GTP-binding protein era [Escherichia sp. 3_2_53FAA] gi|256017285|ref|ZP_05431150.1| GTP-binding protein Era [Shigella sp. D9] gi|260845251|ref|YP_003223029.1| membrane-associated, 16S rRNA-binding GTPase [Escherichia coli O103:H2 str. 12009] gi|260856660|ref|YP_003230551.1| membrane-associated, 16S rRNA-binding GTPase [Escherichia coli O26:H11 str. 11368] gi|260869253|ref|YP_003235655.1| membrane-associated, 16S rRNA-binding GTPase [Escherichia coli O111:H- str. 11128] gi|293406008|ref|ZP_06650000.1| era [Escherichia coli FVEC1412] gi|293410982|ref|ZP_06654558.1| GTP-binding protein Era [Escherichia coli B354] gi|293446920|ref|ZP_06663342.1| GTP-binding protein Era [Escherichia coli B088] gi|298381808|ref|ZP_06991407.1| GTP-binding protein Era [Escherichia coli FVEC1302] gi|300817657|ref|ZP_07097872.1| GTP-binding protein Era [Escherichia coli MS 107-1] gi|300820755|ref|ZP_07100905.1| GTP-binding protein Era [Escherichia coli MS 119-7] gi|300898319|ref|ZP_07116667.1| GTP-binding protein Era [Escherichia coli MS 198-1] gi|300927057|ref|ZP_07142809.1| GTP-binding protein Era [Escherichia coli MS 182-1] gi|300935699|ref|ZP_07150669.1| GTP-binding protein Era [Escherichia coli MS 21-1] gi|300974162|ref|ZP_07172480.1| GTP-binding protein Era [Escherichia coli MS 200-1] gi|300982270|ref|ZP_07175981.1| GTP-binding protein Era [Escherichia coli MS 45-1] gi|301024853|ref|ZP_07188490.1| GTP-binding protein Era [Escherichia coli MS 69-1] gi|301047205|ref|ZP_07194297.1| GTP-binding protein Era [Escherichia coli MS 185-1] gi|301330332|ref|ZP_07222979.1| GTP-binding protein Era [Escherichia coli MS 78-1] gi|306814370|ref|ZP_07448532.1| GTP-binding protein Era [Escherichia coli NC101] gi|307313863|ref|ZP_07593479.1| GTP-binding protein Era [Escherichia coli W] gi|309794380|ref|ZP_07688803.1| GTP-binding protein Era [Escherichia coli MS 145-7] gi|312965482|ref|ZP_07779714.1| GTP-binding protein Era [Escherichia coli 2362-75] gi|331658710|ref|ZP_08359654.1| GTP-binding protein Era [Escherichia coli TA206] gi|331664134|ref|ZP_08365044.1| GTP-binding protein Era [Escherichia coli TA143] gi|331669316|ref|ZP_08370164.1| GTP-binding protein Era [Escherichia coli TA271] gi|331674015|ref|ZP_08374778.1| GTP-binding protein Era [Escherichia coli TA280] gi|331678562|ref|ZP_08379237.1| GTP-binding protein Era [Escherichia coli H591] gi|331684216|ref|ZP_08384812.1| GTP-binding protein Era [Escherichia coli H299] gi|332278276|ref|ZP_08390689.1| GTP-binding protein era [Shigella sp. D9] gi|34222489|sp|Q8FF17|ERA_ECOL6 RecName: Full=GTPase Era gi|122422870|sp|Q1R8G7|ERA_ECOUT RecName: Full=GTPase Era gi|123048970|sp|Q0TES2|ERA_ECOL5 RecName: Full=GTPase Era gi|123558970|sp|Q31XS1|ERA_SHIBS RecName: Full=GTPase Era gi|123616464|sp|Q3YYV0|ERA_SHISS RecName: Full=GTPase Era gi|189037269|sp|A7ZQ10|ERA_ECO24 RecName: Full=GTPase Era gi|189037271|sp|A1AE96|ERA_ECOK1 RecName: Full=GTPase Era gi|226741206|sp|B7MIQ1|ERA_ECO45 RecName: Full=GTPase Era gi|226741208|sp|B7NRL9|ERA_ECO7I RecName: Full=GTPase Era gi|226741209|sp|B7M8H9|ERA_ECO8A RecName: Full=GTPase Era gi|226741211|sp|B7N6F4|ERA_ECOLU RecName: Full=GTPase Era gi|226741212|sp|B6I5E0|ERA_ECOSE RecName: Full=GTPase Era gi|226741213|sp|B1LP79|ERA_ECOSM RecName: Full=GTPase Era gi|226741236|sp|B2TXX9|ERA_SHIB3 RecName: Full=GTPase Era gi|254783654|sp|B7UH06|ERA_ECO27 RecName: Full=GTPase Era gi|254783655|sp|B7LDF9|ERA_ECO55 RecName: Full=GTPase Era gi|254783656|sp|B7MYJ7|ERA_ECO81 RecName: Full=GTPase Era gi|26109337|gb|AAN81539.1|AE016764_221 GTP-binding protein era [Escherichia coli CFT073] gi|73856605|gb|AAZ89312.1| GTP-binding protein [Shigella sonnei Ss046] gi|81246429|gb|ABB67137.1| GTP-binding protein [Shigella boydii Sb227] gi|91073466|gb|ABE08347.1| GTP-binding protein era [Escherichia coli UTI89] gi|110344320|gb|ABG70557.1| GTP-binding protein Era [Escherichia coli 536] gi|115513911|gb|ABJ01986.1| membrane-associated, 16S rRNA-binding GTPase [Escherichia coli APEC O1] gi|157079914|gb|ABV19622.1| GTP-binding protein Era [Escherichia coli E24377A] gi|170519224|gb|ACB17402.1| GTP-binding protein Era [Escherichia coli SMS-3-5] gi|187429782|gb|ACD09056.1| GTP-binding protein Era [Shigella boydii CDC 3083-94] gi|190901976|gb|EDV61723.1| GTP-binding protein Era [Escherichia coli B7A] gi|190905717|gb|EDV65339.1| GTP-binding protein Era [Escherichia coli F11] gi|192929304|gb|EDV82913.1| GTP-binding protein Era [Escherichia coli E22] gi|192958287|gb|EDV88727.1| GTP-binding protein Era [Escherichia coli E110019] gi|194412670|gb|EDX28965.1| GTP-binding protein Era [Escherichia coli B171] gi|194419687|gb|EDX35767.1| GTP-binding protein Era [Shigella dysenteriae 1012] gi|209913304|dbj|BAG78378.1| GTP-binding protein [Escherichia coli SE11] gi|215265982|emb|CAS10391.1| membrane-associated, 16S rRNA-binding GTPase [Escherichia coli O127:H6 str. E2348/69] gi|218352926|emb|CAU98725.1| membrane-associated, 16S rRNA-binding GTPase [Escherichia coli 55989] gi|218361915|emb|CAQ99515.1| membrane-associated, 16S rRNA-binding GTPase [Escherichia coli IAI1] gi|218366256|emb|CAR04003.1| membrane-associated, 16S rRNA-binding GTPase [Escherichia coli S88] gi|218371066|emb|CAR18893.1| membrane-associated, 16S rRNA-binding GTPase [Escherichia coli IAI39] gi|218428246|emb|CAR09163.2| membrane-associated, 16S rRNA-binding GTPase [Escherichia coli ED1a] gi|218433167|emb|CAR14063.1| membrane-associated, 16S rRNA-binding GTPase [Escherichia coli UMN026] gi|222034271|emb|CAP77012.1| GTP-binding protein era [Escherichia coli LF82] gi|226901442|gb|EEH87701.1| GTP-binding protein era [Escherichia sp. 3_2_53FAA] gi|227835952|gb|EEJ46418.1| GTP-binding protein Era [Escherichia coli 83972] gi|257755309|dbj|BAI26811.1| membrane-associated, 16S rRNA-binding GTPase [Escherichia coli O26:H11 str. 11368] gi|257760398|dbj|BAI31895.1| membrane-associated, 16S rRNA-binding GTPase [Escherichia coli O103:H2 str. 12009] gi|257765609|dbj|BAI37104.1| membrane-associated, 16S rRNA-binding GTPase [Escherichia coli O111:H- str. 11128] gi|281179615|dbj|BAI55945.1| GTP-binding protein [Escherichia coli SE15] gi|284922516|emb|CBG35603.1| GTP-binding protein [Escherichia coli 042] gi|291323750|gb|EFE63178.1| GTP-binding protein Era [Escherichia coli B088] gi|291428216|gb|EFF01243.1| era [Escherichia coli FVEC1412] gi|291471450|gb|EFF13934.1| GTP-binding protein Era [Escherichia coli B354] gi|294490299|gb|ADE89055.1| GTP-binding protein Era [Escherichia coli IHE3034] gi|298279250|gb|EFI20764.1| GTP-binding protein Era [Escherichia coli FVEC1302] gi|300300882|gb|EFJ57267.1| GTP-binding protein Era [Escherichia coli MS 185-1] gi|300308901|gb|EFJ63421.1| GTP-binding protein Era [Escherichia coli MS 200-1] gi|300357981|gb|EFJ73851.1| GTP-binding protein Era [Escherichia coli MS 198-1] gi|300396384|gb|EFJ79922.1| GTP-binding protein Era [Escherichia coli MS 69-1] gi|300408824|gb|EFJ92362.1| GTP-binding protein Era [Escherichia coli MS 45-1] gi|300416941|gb|EFK00252.1| GTP-binding protein Era [Escherichia coli MS 182-1] gi|300459133|gb|EFK22626.1| GTP-binding protein Era [Escherichia coli MS 21-1] gi|300526508|gb|EFK47577.1| GTP-binding protein Era [Escherichia coli MS 119-7] gi|300529645|gb|EFK50707.1| GTP-binding protein Era [Escherichia coli MS 107-1] gi|300843666|gb|EFK71426.1| GTP-binding protein Era [Escherichia coli MS 78-1] gi|305851764|gb|EFM52216.1| GTP-binding protein Era [Escherichia coli NC101] gi|306906364|gb|EFN36879.1| GTP-binding protein Era [Escherichia coli W] gi|307554585|gb|ADN47360.1| GTP-binding protein Era [Escherichia coli ABU 83972] gi|307625886|gb|ADN70190.1| GTP-binding protein Era [Escherichia coli UM146] gi|308121836|gb|EFO59098.1| GTP-binding protein Era [Escherichia coli MS 145-7] gi|312289902|gb|EFR17790.1| GTP-binding protein Era [Escherichia coli 2362-75] gi|312947137|gb|ADR27964.1| GTP-binding protein Era [Escherichia coli O83:H1 str. NRG 857C] gi|315061885|gb|ADT76212.1| membrane-associated, 16S rRNA-binding GTPase [Escherichia coli W] gi|315288043|gb|EFU47445.1| GTP-binding protein Era [Escherichia coli MS 110-3] gi|315292458|gb|EFU51810.1| GTP-binding protein Era [Escherichia coli MS 153-1] gi|315300507|gb|EFU59736.1| GTP-binding protein Era [Escherichia coli MS 16-3] gi|320176132|gb|EFW51199.1| GTP-binding protein Era [Shigella dysenteriae CDC 74-1112] gi|320182109|gb|EFW57013.1| GTP-binding protein Era [Shigella boydii ATCC 9905] gi|320186365|gb|EFW61099.1| GTP-binding protein Era [Shigella flexneri CDC 796-83] gi|320196402|gb|EFW71026.1| GTP-binding protein Era [Escherichia coli WV_060327] gi|320200130|gb|EFW74719.1| GTP-binding protein Era [Escherichia coli EC4100B] gi|323156224|gb|EFZ42383.1| GTP-binding protein Era [Escherichia coli EPECa14] gi|323159223|gb|EFZ45213.1| GTP-binding protein Era [Escherichia coli E128010] gi|323167800|gb|EFZ53495.1| GTP-binding protein Era [Shigella sonnei 53G] gi|323173116|gb|EFZ58747.1| GTP-binding protein Era [Escherichia coli LT-68] gi|323177304|gb|EFZ62892.1| GTP-binding protein Era [Escherichia coli 1180] gi|323184554|gb|EFZ69928.1| GTP-binding protein Era [Escherichia coli 1357] gi|323188319|gb|EFZ73611.1| GTP-binding protein Era [Escherichia coli RN587/1] gi|323377534|gb|ADX49802.1| GTP-binding protein Era [Escherichia coli KO11] gi|323944623|gb|EGB40691.1| GTP-binding protein Era [Escherichia coli H120] gi|323949220|gb|EGB45111.1| GTP-binding protein Era [Escherichia coli H252] gi|323955802|gb|EGB51560.1| GTP-binding protein Era [Escherichia coli H263] gi|324008475|gb|EGB77694.1| GTP-binding protein Era [Escherichia coli MS 57-2] gi|324014389|gb|EGB83608.1| GTP-binding protein Era [Escherichia coli MS 60-1] gi|324020024|gb|EGB89243.1| GTP-binding protein Era [Escherichia coli MS 117-3] gi|324118224|gb|EGC12120.1| GTP-binding protein Era [Escherichia coli E1167] gi|331054375|gb|EGI26402.1| GTP-binding protein Era [Escherichia coli TA206] gi|331059933|gb|EGI31910.1| GTP-binding protein Era [Escherichia coli TA143] gi|331064510|gb|EGI36421.1| GTP-binding protein Era [Escherichia coli TA271] gi|331069288|gb|EGI40680.1| GTP-binding protein Era [Escherichia coli TA280] gi|331075022|gb|EGI46342.1| GTP-binding protein Era [Escherichia coli H591] gi|331079168|gb|EGI50370.1| GTP-binding protein Era [Escherichia coli H299] gi|332089225|gb|EGI94332.1| GTP-binding protein Era [Shigella dysenteriae 155-74] gi|332092618|gb|EGI97690.1| GTP-binding protein Era [Shigella boydii 3594-74] gi|332100628|gb|EGJ03974.1| GTP-binding protein era [Shigella sp. D9] Length = 301 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 51/178 (28%), Positives = 88/178 (49%), Gaps = 6/178 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N+L+ +K+++ TR R+ G VDT G+ + Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN +I + L++F+++ TP D + + LR P+I+ NK+D Sbjct: 71 KRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLRDGKAPVILAVNKVDNV 129 Query: 125 IAQRNF-----YEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 + + + ++F +IV ISAE L + +++ K + + P + I + Sbjct: 130 QEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPEATHHFPEDYITD 187 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 52/167 (31%), Positives = 84/167 (50%), Gaps = 9/167 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS-VSISWNWKNHPIEIFDTAGMRKP 264 IA+VGRPNVGKSTL+N+LLG +T ++ TR V I I + DT G+ Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYV-DTPGLHME 69 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 + ++ + K + S+ E I +++ T + D +++ + + V+LA+NK Sbjct: 70 EK--RAINRLMNKAASSSIGDVELVIFVVEGT-RWTPDDEMVLNKLRDGKAPVILAVNKV 126 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSV 371 D V +K +LL L+ A Q+ + I IS TG +D + V Sbjct: 127 DNVQEKADLLPHLQFLA----SQMNFLDIVPISAETGLNVDTIAAIV 169 >gi|182418397|ref|ZP_02949691.1| GTP-binding protein Era [Clostridium butyricum 5521] gi|237666582|ref|ZP_04526567.1| GTP-binding protein Era [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377779|gb|EDT75323.1| GTP-binding protein Era [Clostridium butyricum 5521] gi|237657781|gb|EEP55336.1| GTP-binding protein Era [Clostridium butyricum E4 str. BoNT E BL5262] Length = 296 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 58/177 (32%), Positives = 89/177 (50%), Gaps = 9/177 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNI--VDTAGIAD 62 + IVG PNVGKSTL N ++ +K+++V N P TR+ + Q I+ G F + VDT GI Sbjct: 7 VTIVGRPNVGKSTLLNYIMGEKLSIVSNKPQTTRNNI--QTILTGDDFQMVFVDTPGIHK 64 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 K+ + + M + + + + L+LFL + I D I L+ K P+ V NK+D Sbjct: 65 PKH-KLGEFMVNSAKESTKDVDLVLFLTNPCEEIGKGDRFILETLKGKKCPVFFVLNKVD 123 Query: 123 TRIAQR--NFYEIYS--LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 R E++S +F EIV ISA L ++ K + +P +MI Sbjct: 124 ENTQDRVAKTLEMFSKEFEFAEIVPISAIKGKNVDALLDLMKKSMPEGPKYYPDDMI 180 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 42/164 (25%), Positives = 78/164 (47%), Gaps = 7/164 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 + +VGRPNVGKSTL+N ++G + ++ TR+++ + + DT G+ KP Sbjct: 7 VTIVGRPNVGKSTLLNYIMGEKLSIVSNKPQTTRNNIQTILTGDDFQMVFVDTPGIHKPK 66 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + V + +S + + + L + K D I++++ V LNK D Sbjct: 67 H---KLGEFMVNSAKESTKDVDLVLFLTNPCEEIGKGDRFILETLKGKKCPVFFVLNKVD 123 Query: 326 M-VSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLM 368 D++ ++ +K + +I + I+ I G+ + L DLM Sbjct: 124 ENTQDRVAKTLEMFSKEFE-FAEI--VPISAIKGKNVDALLDLM 164 >gi|229521287|ref|ZP_04410707.1| GTP-binding protein Era [Vibrio cholerae TM 11079-80] gi|229341819|gb|EEO06821.1| GTP-binding protein Era [Vibrio cholerae TM 11079-80] Length = 324 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 52/177 (29%), Positives = 91/177 (51%), Gaps = 8/177 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N L+ +K+++ P TR R+ G VDT G+ + Sbjct: 33 VAIVGRPNVGKSTLLNNLLGQKISITSRKPQTTRHRIMGVETEGKYQAIYVDTPGLHIEE 92 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN ++++ +L+LF+++ T D + + L+K N P+++ NK+D + Sbjct: 93 KRAINRLMNRAASSSLSDVNLVLFVVEG-THWTADDEMVFNKLQKANFPVVLCVNKVD-Q 150 Query: 125 IAQRNFYEIYSLD------FKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 + RN ++ L+ F +IV ISA+ T L + + + + P E + Sbjct: 151 VKDRNEVMLHMLELSKRMPFVDIVPISAKQGKNTDVLKKHVREHLPKAVHHFPEEYV 207 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 47/170 (27%), Positives = 76/170 (44%), Gaps = 11/170 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV-SISWNWKNHPIEIFDTAGMR-K 263 +A+VGRPNVGKSTL+N LLG +T + TR + + K I + DT G+ + Sbjct: 33 VAIVGRPNVGKSTLLNNLLGQKISITSRKPQTTRHRIMGVETEGKYQAIYV-DTPGLHIE 91 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 R L + S+ V ++ + + D + + + VVL +NK Sbjct: 92 EKRAINRLMNRAASSSLSDV----NLVLFVVEGTHWTADDEMVFNKLQKANFPVVLCVNK 147 Query: 324 WDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 D V D+ ++ + + K +P + I IS + G+ D L V E Sbjct: 148 VDQVKDRNEVMLHM-LELSKRMPFVD---IVPISAKQGKNTDVLKKHVRE 193 >gi|261337358|ref|ZP_05965242.1| GTP-binding protein Era [Bifidobacterium gallicum DSM 20093] gi|270277736|gb|EFA23590.1| GTP-binding protein Era [Bifidobacterium gallicum DSM 20093] Length = 337 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 60/203 (29%), Positives = 93/203 (45%), Gaps = 22/203 (10%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTL N L+ ++A+ + P TR + G N +VDT GI + Sbjct: 32 VAVVGRPNVGKSTLINALLGTQIAIASSRPETTRKAIRGILTTNDAQMVLVDTPGIHRPR 91 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKK------------NI 112 + +++ND + ++ + I FL+ + I P D I S LR + + Sbjct: 92 TL-LGQRLNDIVDESLADCDAIAFLLPADQEIGPGDKRILSRLRAEFAHKRDDGSFSWKV 150 Query: 113 PIIIVSNK---MDTRIAQRNFYEIYSL-DFKEIVEISAEHDLGTSELHSVIFKIFKQKYP 168 P+I V K +D EI DF +IV +SA D E+ +V+ + + Sbjct: 151 PLIGVLTKIDELDRGTLINKLIEINEFADFTDIVPVSALKDDNIEEVRNVLIEHLPEGPQ 210 Query: 169 NHPLEMIENNKRNEESPKENITS 191 +P E I EE P+E I Sbjct: 211 MYPAEQI-----TEERPEETIAE 228 Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 36/109 (33%), Positives = 55/109 (50%), Gaps = 3/109 (2%) Query: 199 NISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDT 258 N+++ +AVVGRPNVGKSTLIN LLG + S+ TR ++ + + + DT Sbjct: 25 NVTRSGFVAVVGRPNVGKSTLINALLGTQIAIASSRPETTRKAIRGILTTNDAQMVLVDT 84 Query: 259 AGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIV 307 G+ +P + L Q+ +S+ C+ LL A D RI+ Sbjct: 85 PGIHRPRTL---LGQRLNDIVDESLADCDAIAFLLPADQEIGPGDKRIL 130 >gi|86610114|ref|YP_478876.1| tRNA modification GTPase TrmE [Synechococcus sp. JA-2-3B'a(2-13)] gi|123500914|sp|Q2JIE6|MNME_SYNJB RecName: Full=tRNA modification GTPase mnmE gi|86558656|gb|ABD03613.1| tRNA modification GTPase TrmE [Synechococcus sp. JA-2-3B'a(2-13)] Length = 459 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 50/170 (29%), Positives = 89/170 (52%), Gaps = 6/170 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKS+L N + A+V + PG TRD + ++ G+ ++DTAGI + Sbjct: 228 VAIVGRPNVGKSSLLNAWSGQDRAIVTDLPGTTRDVVESHLVVKGIPVQLLDTAGIRATE 287 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + + ++++ A +++ +ID++AG T D AI +R + P+I+V NK D Sbjct: 288 D-PVERLGVERSQRLAQAADVLVLVIDAQAGWTAADAAIYESIRHR--PLILVINKTD-- 342 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEM 174 +A + + ++A+ G EL + ++ Q P LE+ Sbjct: 343 LAPPEGIPLPPEIAHRVPAVAAQGK-GIPELEEALEQLVTQGRPQPNLEI 391 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 38/124 (30%), Positives = 70/124 (56%), Gaps = 5/124 (4%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 +++A+VGRPNVGKS+L+N G +R + G TRD V K P+++ DTAG+R Sbjct: 226 VKVAIVGRPNVGKSSLLNAWSGQDRAIVTDLPGTTRDVVESHLVVKGIPVQLLDTAGIRA 285 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 + +E+ V++S + + + ++++DA + D I +S+ + ++L +NK Sbjct: 286 ---TEDPVERLGVERSQRLAQAADVLVLVIDAQAGWTAADAAIYESIRH--RPLILVINK 340 Query: 324 WDMV 327 D+ Sbjct: 341 TDLA 344 >gi|326560694|gb|EGE11062.1| tRNA modification GTPase TrmE [Moraxella catarrhalis 46P47B1] Length = 466 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 51/175 (29%), Positives = 87/175 (49%), Gaps = 23/175 (13%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 + + + G+PN GKS+L+NRL G R + +G TRD++ + + + DTAG+RK Sbjct: 221 VHVVLAGKPNAGKSSLLNRLSGTERAIVTEIAGTTRDTLEETLVLNGLTVHLTDTAGLRK 280 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTG--------- 314 + +E+ +K++ ++R + I++ D T E L + D +F G Sbjct: 281 TD---DHVEKIGIKRAFDAIRQADVLIMVYDVTT--ETDPLALADQLFCEGVTEDVGDII 335 Query: 315 -HAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLM 368 ++L NK D++ K L TK+ L +Y +S TGEGLD+L+ Sbjct: 336 RQKLILVANKSDLLISKPVLQVSCETKSAPKL-----VY---VSCETGEGLDELI 382 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 53/191 (27%), Positives = 85/191 (44%), Gaps = 40/191 (20%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + + G PN GKS+L NRL + A+V G TRD L ++NG+ ++ DTAG+ Sbjct: 223 VVLAGKPNAGKSSLLNRLSGTERAIVTEIAGTTRDTLEETLVLNGLTVHLTDTAGL---- 278 Query: 65 NCSIAKQMNDQTEL--------AINEAHLILFLIDSKAGITPYDHA-----------ITS 105 ++ +D E AI +A +++ + D P A + Sbjct: 279 -----RKTDDHVEKIGIKRAFDAIRQADVLIMVYDVTTETDPLALADQLFCEGVTEDVGD 333 Query: 106 FLRKKNIPIIIVSNKMDTRIAQRNFYEIYSLDFK---EIVEISAEHDLGTSELHSVIFKI 162 +R+K +I+V+NK D I++ S + K ++V +S E G EL +I Sbjct: 334 IIRQK---LILVANKSDLLISKPVLQ--VSCETKSAPKLVYVSCETGEGLDEL----IEI 384 Query: 163 FKQKYPNHPLE 173 QK HP E Sbjct: 385 LTQKVGFHPPE 395 >gi|166367612|ref|YP_001659885.1| tRNA modification GTPase TrmE [Microcystis aeruginosa NIES-843] gi|205415798|sp|B0JVV0|MNME_MICAN RecName: Full=tRNA modification GTPase mnmE gi|166089985|dbj|BAG04693.1| thiophen and furan oxidation protein [Microcystis aeruginosa NIES-843] Length = 457 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 55/179 (30%), Positives = 93/179 (51%), Gaps = 11/179 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI--AD 62 +AIVG PNVGKS+L N + A+V + PG TRD + Q ++ G+ ++DTAGI A Sbjct: 225 VAIVGRPNVGKSSLLNAWSRSDRAIVTDLPGTTRDIVESQLVVAGIPVQVLDTAGIRSAS 284 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + I + + QT A L+L + +++G T D I + + +I+V NK+D Sbjct: 285 DRVEQIGVERSRQTA---RSADLVLLTVSAESGWTQEDEEIYRSVSDRR--LILVINKID 339 Query: 123 TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELH-SVIFKIFKQKYPNHPLEMIENNKR 180 + IY + K +V++SA + G +L S+I + Q+ L++ N ++ Sbjct: 340 LANPE---TVIYPAEIKRVVKLSAAQNQGIEDLEKSLINAVQNQELQAANLDLAINQRQ 395 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 41/124 (33%), Positives = 70/124 (56%), Gaps = 5/124 (4%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 L++A+VGRPNVGKS+L+N +R + G TRD V P+++ DTAG+R Sbjct: 223 LKVAIVGRPNVGKSSLLNAWSRSDRAIVTDLPGTTRDIVESQLVVAGIPVQVLDTAGIRS 282 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 S + +EQ V++S Q+ R+ + ++ + A + ++D I SV + ++L +NK Sbjct: 283 AS---DRVEQIGVERSRQTARSADLVLLTVSAESGWTQEDEEIYRSV--SDRRLILVINK 337 Query: 324 WDMV 327 D+ Sbjct: 338 IDLA 341 >gi|37783505|gb|AAP41880.1| GTP-binding protein-like protein [Campylobacter jejuni] Length = 190 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 57/192 (29%), Positives = 98/192 (51%), Gaps = 9/192 (4%) Query: 233 SQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVL 292 S +G T D V+ S +K+ IE DTAG+RK +I + LE+ + ++ + + + +++ Sbjct: 3 SIAGTTIDPVNESIVYKDKVIEFVDTAGIRKRGKI-QGLERFALNRTEKILSHSQIALLV 61 Query: 293 LDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD---MVSDKLNLLQDLRTKAIKNLPQIG 349 LDA F + D RI V V++ LNKWD M DK +++LR K L Sbjct: 62 LDAHEGFNELDERIAGLVAKHYLGVIIVLNKWDKSEMDFDKT--VKELRLDRFKFLAYAP 119 Query: 350 DIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNR 409 I ++ +SG+ L D +L+I + + +I TS LN+ ++ +P P + + + Sbjct: 120 VISVSALSGKRVHVLLD---KILQIFENFTQKIQTSKLNTLIENATRAHPLPHDYGKLVK 176 Query: 410 LKYITQIQSSPP 421 + Y Q +PP Sbjct: 177 IYYAVQYDLAPP 188 Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust. Identities = 42/173 (24%), Positives = 71/173 (41%), Gaps = 18/173 (10%) Query: 30 VGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD-GKNCSIAKQMNDQTELAINEAHLILF 88 V + G T D + + + VDTAGI GK + + ++TE ++ + + L Sbjct: 1 VSSIAGTTIDPVNESIVYKDKVIEFVDTAGIRKRGKIQGLERFALNRTEKILSHSQIALL 60 Query: 89 LIDSKAGITPYDHAITSFLRKKNIPIIIVSNK-------MDTRIAQRNFYEIYSLDFKEI 141 ++D+ G D I + K + +IIV NK D + + L + + Sbjct: 61 VLDAHEGFNELDERIAGLVAKHYLGVIIVLNKWDKSEMDFDKTVKELRLDRFKFLAYAPV 120 Query: 142 VEISAEHDLGTSELHSV------IFKIFKQKYPNHPLE-MIENNKRNEESPKE 187 + +SA L +H + IF+ F QK L +IEN R P + Sbjct: 121 ISVSA---LSGKRVHVLLDKILQIFENFTQKIQTSKLNTLIENATRAHPLPHD 170 >gi|325496354|gb|EGC94213.1| GTP-binding protein Era [Escherichia fergusonii ECD227] Length = 301 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 51/178 (28%), Positives = 88/178 (49%), Gaps = 6/178 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N+L+ +K+++ TR R+ G VDT G+ + Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN +I + L++F+++ TP D + + LR P+I+ NK+D Sbjct: 71 KRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLRDGKAPVILAVNKVDNV 129 Query: 125 IAQRNF-----YEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 + + + ++F +IV ISAE L + +++ K + + P + I + Sbjct: 130 QEKADLLPHLQFLASQMNFIDIVPISAETGLNVDTIAAIVRKHLPEATHHFPEDYITD 187 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 53/167 (31%), Positives = 84/167 (50%), Gaps = 9/167 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS-VSISWNWKNHPIEIFDTAGMRKP 264 IA+VGRPNVGKSTL+N+LLG +T ++ TR V I I + DT G+ Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYV-DTPGLHME 69 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 + ++ + K + S+ E I +++ T + D +++ + + V+LA+NK Sbjct: 70 EK--RAINRLMNKAASSSIGDVELVIFVVEGT-RWTPDDEMVLNKLRDGKAPVILAVNKV 126 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSV 371 D V +K +LL L+ A Q+ I I IS TG +D + V Sbjct: 127 DNVQEKADLLPHLQFLA----SQMNFIDIVPISAETGLNVDTIAAIV 169 >gi|67906566|gb|AAY82672.1| predicted GTP-binding protein Era [uncultured bacterium MedeBAC49C08] Length = 300 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 53/177 (29%), Positives = 87/177 (49%), Gaps = 7/177 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 I+IVG NVGKSTL N+++++K+A+ P TR+R+ G + +DT G+ G Sbjct: 7 ISIVGKTNVGKSTLLNKILERKLAITSRKPQTTRNRILGAWNHEDMQAIFLDTPGVHTGH 66 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 ++ K MN A+ LILF++D + + I L IP+I+V NK+D Sbjct: 67 KKALNKYMNQVAMHALKNVDLILFIVD-RDRWGEEEERIIKQLNGSKIPVILVINKIDRI 125 Query: 125 IAQRNFYEIYS-----LDFKEIVEISAEHDLGT-SELHSVIFKIFKQKYPNHPLEMI 175 + + DF+EI+ ISA ++ EL+ VI P++ + + Sbjct: 126 KNKEDLLPTIEKLNAKFDFEEIIPISALKNINAPKELYEVINNYLPHGQPHYEEDFV 182 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 34/129 (26%), Positives = 72/129 (55%), Gaps = 3/129 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 I++VG+ NVGKSTL+N++L +T + TR+ + +WN ++ DT G+ Sbjct: 7 ISIVGKTNVGKSTLLNKILERKLAITSRKPQTTRNRILGAWNHEDMQAIFLDTPGVHTGH 66 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + ++L + + +M +++ + + ++D E+++ RI+ + + V+L +NK D Sbjct: 67 K--KALNKYMNQVAMHALKNVDLILFIVDRDRWGEEEE-RIIKQLNGSKIPVILVINKID 123 Query: 326 MVSDKLNLL 334 + +K +LL Sbjct: 124 RIKNKEDLL 132 >gi|326561737|gb|EGE12072.1| tRNA modification GTPase TrmE [Moraxella catarrhalis 7169] Length = 466 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 50/175 (28%), Positives = 88/175 (50%), Gaps = 23/175 (13%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 + + + G+PN GKS+L+NRL G R + +G TRD++ + + + DTAG+RK Sbjct: 221 VHVVLAGKPNAGKSSLLNRLSGTERAIVTEIAGTTRDTLEETLILNGLTVHLTDTAGLRK 280 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTG--------- 314 + +E+ +K++ ++R + +++ D T E L + D +F G Sbjct: 281 TD---DHVEKIGIKRAFDAIRQADVLMMVYDLTT--ETDPLALADQLFCEGVTEDVGDII 335 Query: 315 -HAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLM 368 ++L NK D++ K L TK++ L +Y +S TGEGLD+L+ Sbjct: 336 RQKLILVANKSDLLVSKPVLQVSCETKSVPKL-----VY---VSCETGEGLDELI 382 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 53/191 (27%), Positives = 84/191 (43%), Gaps = 40/191 (20%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + + G PN GKS+L NRL + A+V G TRD L I+NG+ ++ DTAG+ Sbjct: 223 VVLAGKPNAGKSSLLNRLSGTERAIVTEIAGTTRDTLEETLILNGLTVHLTDTAGL---- 278 Query: 65 NCSIAKQMNDQTEL--------AINEAHLILFLIDSKAGITPYDHA-----------ITS 105 ++ +D E AI +A +++ + D P A + Sbjct: 279 -----RKTDDHVEKIGIKRAFDAIRQADVLMMVYDLTTETDPLALADQLFCEGVTEDVGD 333 Query: 106 FLRKKNIPIIIVSNKMDTRIAQRNFYEIYSLDFKEI---VEISAEHDLGTSELHSVIFKI 162 +R+K +I+V+NK D +++ S + K + V +S E G EL +I Sbjct: 334 IIRQK---LILVANKSDLLVSKPVLQ--VSCETKSVPKLVYVSCETGEGLDEL----IEI 384 Query: 163 FKQKYPNHPLE 173 QK HP E Sbjct: 385 LTQKVGFHPPE 395 >gi|323144163|ref|ZP_08078799.1| ribosome biogenesis GTPase Era [Succinatimonas hippei YIT 12066] gi|322416071|gb|EFY06769.1| ribosome biogenesis GTPase Era [Succinatimonas hippei YIT 12066] Length = 301 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 83/172 (48%), Gaps = 10/172 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A++G PNVGKSTL N L+ +K+++ P TR+R+ G VDT G+ + Sbjct: 10 VALIGRPNVGKSTLMNHLIGQKVSITSRRPQTTRNRVLGIDTQGEYQAVFVDTPGLHKEE 69 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN E A+ + LIL ++D+ T D + S + +P+++V NK+D Sbjct: 70 KRAINRLMNRAAESALGDVELILLVVDATLW-TDDDEMVFSKIENTKVPVVLVINKIDKL 128 Query: 125 IAQRNFYEIYS-----LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHP 171 + + + FK IV +SA +L ++F + P P Sbjct: 129 HDKATLLPLIERLSKRVSFKAIVPVSALRSTNLDDLKKLVF----ESLPEGP 176 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 45/139 (32%), Positives = 71/139 (51%), Gaps = 5/139 (3%) Query: 197 VKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIF 256 ++N SK +A++GRPNVGKSTL+N L+G +T + TR+ V + Sbjct: 1 MENSSKFGFVALIGRPNVGKSTLMNHLIGQKVSITSRRPQTTRNRVLGIDTQGEYQAVFV 60 Query: 257 DTAGMRKPS-RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGH 315 DT G+ K R L + + ++ V E ++++DAT+ + D + + NT Sbjct: 61 DTPGLHKEEKRAINRLMNRAAESALGDV---ELILLVVDATL-WTDDDEMVFSKIENTKV 116 Query: 316 AVVLALNKWDMVSDKLNLL 334 VVL +NK D + DK LL Sbjct: 117 PVVLVINKIDKLHDKATLL 135 >gi|309806580|ref|ZP_07700577.1| ribosome biogenesis GTPase Era [Lactobacillus iners LactinV 03V1-b] gi|308167000|gb|EFO69182.1| ribosome biogenesis GTPase Era [Lactobacillus iners LactinV 03V1-b] Length = 300 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 56/169 (33%), Positives = 85/169 (50%), Gaps = 11/169 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VGRPNVGKSTL+N L+G + +Q TR+ +S + N I DT G+ KP Sbjct: 11 VALVGRPNVGKSTLLNYLVGEKVAIMSNQPQTTRNKISGIYTNDNEQIIFIDTPGIHKPK 70 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +L+ K S ++ E + ++D P D+ I+D + N V L +NK D Sbjct: 71 N---NLDDFMDKSSYSALNDVEAVLFMVDPE-PAGNGDMFIIDLLKNVACPVFLIINKID 126 Query: 326 MVS-DKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 V DKL + D K +K I IS R G +DDL+ ++++ Sbjct: 127 TVHPDKLLPIIDSYNKLVKFAEII------PISARQGNNIDDLIKTLVK 169 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 52/165 (31%), Positives = 83/165 (50%), Gaps = 6/165 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTL N LV +K+A++ N P TR+++ G + +DT GI K Sbjct: 11 VALVGRPNVGKSTLLNYLVGEKVAIMSNQPQTTRNKISGIYTNDNEQIIFIDTPGIHKPK 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N ++ M+ + A+N+ +LF++D + D I L+ P+ ++ NK+DT Sbjct: 71 N-NLDDFMDKSSYSALNDVEAVLFMVDPEPAGNG-DMFIIDLLKNVACPVFLIINKIDTV 128 Query: 125 IAQRNFYEIYSLD----FKEIVEISAEHDLGTSELHSVIFKIFKQ 165 + I S + F EI+ ISA +L + K Q Sbjct: 129 HPDKLLPIIDSYNKLVKFAEIIPISARQGNNIDDLIKTLVKYLPQ 173 >gi|227874779|ref|ZP_03992932.1| GTP-binding protein Era [Mobiluncus mulieris ATCC 35243] gi|227844554|gb|EEJ54710.1| GTP-binding protein Era [Mobiluncus mulieris ATCC 35243] Length = 303 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 49/147 (33%), Positives = 75/147 (51%), Gaps = 6/147 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A++G PNVGKSTL N +V +K+A+ P TR G G +VDT GI + Sbjct: 19 VAVLGRPNVGKSTLINEMVGRKIAITSARPETTRHVSRGIVHRPGFQLVLVDTPGIHRPR 78 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITS-FLRKKNIPIIIVSNKMDT 123 + +++ND+ E A + L++F + + I P D I LR IP + V K D Sbjct: 79 TL-LGQRLNDRVEEAQADVDLLVFCVPADQEIGPGDRRIVEKQLRANRIPALAVVTKTDV 137 Query: 124 RIAQRNFYEIYSL----DFKEIVEISA 146 + ++ +L DF+EIV +SA Sbjct: 138 ATPNQIAAQLLALNELYDFREIVPVSA 164 Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust. Identities = 44/175 (25%), Positives = 82/175 (46%), Gaps = 14/175 (8%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +AV+GRPNVGKSTLIN ++G +T ++ TR + + + DT G+ +P Sbjct: 19 VAVLGRPNVGKSTLINEMVGRKIAITSARPETTRHVSRGIVHRPGFQLVLVDTPGIHRPR 78 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ----DLRIVDSVFNTGHAVVLA- 320 + L Q+ + V + + LL +P +++ D RIV+ LA Sbjct: 79 TL---LGQRLNDR----VEEAQADVDLLVFCVPADQEIGPGDRRIVEKQLRANRIPALAV 131 Query: 321 LNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEIN 375 + K D+ + Q L + + +I + ++ + G+ E L DL+ ++ ++ Sbjct: 132 VTKTDVATPNQIAAQLLALNELYDFREI--VPVSAVQGKQVELLIDLLGGLMPLS 184 >gi|260061761|ref|YP_003194841.1| GTP-binding protein Era [Robiginitalea biformata HTCC2501] gi|88785893|gb|EAR17062.1| putative GTP-binding protein (cell growth-related) [Robiginitalea biformata HTCC2501] Length = 295 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 53/174 (30%), Positives = 91/174 (52%), Gaps = 12/174 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIV--DTAGIAD 62 + I+G PNVGKSTL N LV ++++++ + TR R+ G I+NG F IV DT GI Sbjct: 9 VNIIGNPNVGKSTLMNALVGERLSIITSKAQTTRHRILG--IVNGDDFQIVFSDTPGIIK 66 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLID-SKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 + + M D LA+ +A ++L++++ + G+ D A +R IP++++ NK+ Sbjct: 67 -PAYGLQESMMDFVRLALVDADVLLYMVEVGEKGLK--DEAFAEKIRSSQIPVLLLINKI 123 Query: 122 DT----RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHP 171 DT ++ ++ + EI+ ISA G E+ I + + P P Sbjct: 124 DTSDQGQLEEQVAFWTEQFPNAEIIPISALERFGVPEVLDRILALLPEAPPYFP 177 Score = 40.4 bits (93), Expect = 0.68, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 34/60 (56%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 + ++G PNVGKSTL+N L+G + S++ TR + N + I DT G+ KP+ Sbjct: 9 VNIIGNPNVGKSTLMNALVGERLSIITSKAQTTRHRILGIVNGDDFQIVFSDTPGIIKPA 68 >gi|153214498|ref|ZP_01949407.1| GTP-binding protein Era [Vibrio cholerae 1587] gi|153803091|ref|ZP_01957677.1| GTP-binding protein Era [Vibrio cholerae MZO-3] gi|153826892|ref|ZP_01979559.1| GTP-binding protein Era [Vibrio cholerae MZO-2] gi|153830876|ref|ZP_01983543.1| GTP-binding protein Era [Vibrio cholerae 623-39] gi|229524447|ref|ZP_04413852.1| GTP-binding protein Era [Vibrio cholerae bv. albensis VL426] gi|229527068|ref|ZP_04416463.1| GTP-binding protein Era [Vibrio cholerae 12129(1)] gi|254226245|ref|ZP_04919838.1| GTP-binding protein Era [Vibrio cholerae V51] gi|254291660|ref|ZP_04962448.1| GTP-binding protein Era [Vibrio cholerae AM-19226] gi|262190710|ref|ZP_06048941.1| GTP-binding protein Era [Vibrio cholerae CT 5369-93] gi|297581084|ref|ZP_06943009.1| GTP-binding protein Era [Vibrio cholerae RC385] gi|124115300|gb|EAY34120.1| GTP-binding protein Era [Vibrio cholerae 1587] gi|124121373|gb|EAY40116.1| GTP-binding protein Era [Vibrio cholerae MZO-3] gi|125621218|gb|EAZ49559.1| GTP-binding protein Era [Vibrio cholerae V51] gi|148873645|gb|EDL71780.1| GTP-binding protein Era [Vibrio cholerae 623-39] gi|149739255|gb|EDM53517.1| GTP-binding protein Era [Vibrio cholerae MZO-2] gi|150422432|gb|EDN14391.1| GTP-binding protein Era [Vibrio cholerae AM-19226] gi|229335465|gb|EEO00947.1| GTP-binding protein Era [Vibrio cholerae 12129(1)] gi|229338028|gb|EEO03045.1| GTP-binding protein Era [Vibrio cholerae bv. albensis VL426] gi|262033422|gb|EEY51929.1| GTP-binding protein Era [Vibrio cholerae CT 5369-93] gi|297534910|gb|EFH73746.1| GTP-binding protein Era [Vibrio cholerae RC385] Length = 324 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 52/177 (29%), Positives = 91/177 (51%), Gaps = 8/177 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N L+ +K+++ P TR R+ G VDT G+ + Sbjct: 33 VAIVGRPNVGKSTLLNNLLGQKISITSRKPQTTRHRIMGVETEGKYQAIYVDTPGLHIEE 92 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN ++++ +L+LF+++ T D + + L+K N P+++ NK+D + Sbjct: 93 KRAINRLMNRAASSSLSDVNLVLFVVEG-THWTADDEMVFNKLQKANFPVVLCVNKVD-Q 150 Query: 125 IAQRNFYEIYSLD------FKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 + RN ++ L+ F +IV ISA+ T L + + + + P E + Sbjct: 151 VKDRNEVMLHMLELSKRMPFVDIVPISAKQGKNTDVLKKHVREHLPKAVHHFPEEYV 207 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 47/170 (27%), Positives = 76/170 (44%), Gaps = 11/170 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV-SISWNWKNHPIEIFDTAGMR-K 263 +A+VGRPNVGKSTL+N LLG +T + TR + + K I + DT G+ + Sbjct: 33 VAIVGRPNVGKSTLLNNLLGQKISITSRKPQTTRHRIMGVETEGKYQAIYV-DTPGLHIE 91 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 R L + S+ V ++ + + D + + + VVL +NK Sbjct: 92 EKRAINRLMNRAASSSLSDV----NLVLFVVEGTHWTADDEMVFNKLQKANFPVVLCVNK 147 Query: 324 WDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 D V D+ ++ + + K +P + I IS + G+ D L V E Sbjct: 148 VDQVKDRNEVMLHM-LELSKRMPFVD---IVPISAKQGKNTDVLKKHVRE 193 >gi|317051763|ref|YP_004112879.1| tRNA modification GTPase TrmE [Desulfurispirillum indicum S5] gi|316946847|gb|ADU66323.1| tRNA modification GTPase TrmE [Desulfurispirillum indicum S5] Length = 458 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 53/192 (27%), Positives = 96/192 (50%), Gaps = 4/192 (2%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 +AIVG PNVGKS+L N L + + ++V PG TRD + ++G+ ++DTAGI Sbjct: 223 AVAIVGKPNVGKSSLLNALSRSERSIVTAIPGTTRDIVEQYISVHGLPIRLLDTAGIRQS 282 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 ++ ++ + ++T AI +A +IL+L+D+ DH I ++ K P +++ NK D Sbjct: 283 QD-AVEQIGIERTRSAIQQADIILWLLDTSRPADEEDHEIARLVQGK--PCLVLLNKSDL 339 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 A ++++D I+ S + G +L +F+ + + + R E Sbjct: 340 PRAMDESI-LHAMDHDTILTTSLQTGDGLEKLMDTLFRKLSGAHHESHSNPLLSRARQRE 398 Query: 184 SPKENITSEGKS 195 S + S G + Sbjct: 399 SMANALESLGHA 410 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 50/163 (30%), Positives = 84/163 (51%), Gaps = 15/163 (9%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VG+PNVGKS+L+N L R + + G TRD V + PI + DTAG+R+ Sbjct: 224 VAIVGKPNVGKSSLLNALSRSERSIVTAIPGTTRDIVEQYISVHGLPIRLLDTAGIRQSQ 283 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +++EQ ++++ +++ + + LLD + P +++D I V G ++ LNK D Sbjct: 284 ---DAVEQIGIERTRSAIQQADIILWLLDTSRPADEEDHEIARLV--QGKPCLVLLNKSD 338 Query: 326 MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLM 368 + R L + I T S +TG+GL+ LM Sbjct: 339 LP----------RAMDESILHAMDHDTILTTSLQTGDGLEKLM 371 >gi|256027561|ref|ZP_05441395.1| tRNA modification GTPase TrmE [Fusobacterium sp. D11] gi|289765520|ref|ZP_06524898.1| thiophene and furan oxidation protein THDF [Fusobacterium sp. D11] gi|289717075|gb|EFD81087.1| thiophene and furan oxidation protein THDF [Fusobacterium sp. D11] Length = 455 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 49/159 (30%), Positives = 86/159 (54%), Gaps = 7/159 (4%) Query: 171 PLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLL 230 P ++EN K+ K+ + S K + I ++ A++G+PNVGKS+++N LL +R + Sbjct: 189 PENLVENLKKASAEIKDLVLSYDKGKI--IKDGIKTAIIGKPNVGKSSILNSLLREDRAI 246 Query: 231 TGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTI 290 G TRD + N P+ + DTAG+R I E++ V+KS + + + + + Sbjct: 247 VTHIPGTTRDIIEEVININGIPLLLVDTAGIRNTDDIIENI---GVEKSKELINSADLIL 303 Query: 291 VLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSD 329 ++D + +++D RI D + NT V+ LNK D+ D Sbjct: 304 YVIDISREIDEEDFRIYD-IINT-DKVIGILNKIDIKKD 340 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 56/158 (35%), Positives = 83/158 (52%), Gaps = 10/158 (6%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS++ N L+++ A+V + PG TRD + ING+ +VDTAGI + + Sbjct: 223 AIIGKPNVGKSSILNSLLREDRAIVTHIPGTTRDIIEEVININGIPLLLVDTAGIRNTDD 282 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR- 124 + EL IN A LIL++ID I D I + +I + NK+D + Sbjct: 283 IIENIGVEKSKEL-INSADLILYVIDISREIDEEDFRIYDIINTD--KVIGILNKIDIKK 339 Query: 125 -IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 I F +I ++ VEISA +G L + I+K Sbjct: 340 DIDLSKFPKI-----EKWVEISALSKIGIDNLENEIYK 372 >gi|220909026|ref|YP_002484337.1| tRNA modification GTPase TrmE [Cyanothece sp. PCC 7425] gi|254811474|sp|B8HSJ3|MNME_CYAP4 RecName: Full=tRNA modification GTPase mnmE gi|219865637|gb|ACL45976.1| tRNA modification GTPase TrmE [Cyanothece sp. PCC 7425] Length = 460 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 41/118 (34%), Positives = 71/118 (60%), Gaps = 3/118 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKS+L N + A+V PG TRD + ++ G+ ++DTAGI + Sbjct: 225 VAIVGRPNVGKSSLLNAWSRSDRAIVTELPGTTRDVVESYLVVGGIPVQVLDTAGIRETS 284 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + + + +++ A A L+L +ID++ G T D AI + +++++ +I+V NK+D Sbjct: 285 D-QVEQIGVERSHKAAQAADLVLLVIDAQTGWTAEDQAIYTQVQERS--LILVINKID 339 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 50/169 (29%), Positives = 91/169 (53%), Gaps = 14/169 (8%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 L++A+VGRPNVGKS+L+N +R + G TRD V P+++ DTAG+R+ Sbjct: 223 LKVAIVGRPNVGKSSLLNAWSRSDRAIVTELPGTTRDVVESYLVVGGIPVQVLDTAGIRE 282 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 S + +EQ V++S ++ + + ++++DA + +D I V +++L +NK Sbjct: 283 TS---DQVEQIGVERSHKAAQAADLVLLVIDAQTGWTAEDQAIYTQVQE--RSLILVINK 337 Query: 324 WDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVL 372 D+V Q + +A LP Y+ T + + +G++DL ++L Sbjct: 338 IDLVD------QAFQPQAC--LPDPALTYLCTAAAQN-QGIEDLESAIL 377 >gi|122701345|emb|CAL88062.1| GTPase [Helicobacter pylori] Length = 170 Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 52/161 (32%), Positives = 83/161 (51%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYIVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + S + IS H+ G S L I Sbjct: 123 KIDNDKEKERACAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYIVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|238920904|ref|YP_002934419.1| GTP-binding protein Era [Edwardsiella ictaluri 93-146] gi|269140066|ref|YP_003296767.1| GTP-binding protein [Edwardsiella tarda EIB202] gi|238870473|gb|ACR70184.1| GTP-binding protein Era, putative [Edwardsiella ictaluri 93-146] gi|267985727|gb|ACY85556.1| GTP-binding protein [Edwardsiella tarda EIB202] gi|304559894|gb|ADM42558.1| GTP-binding protein Era [Edwardsiella tarda FL6-60] Length = 301 Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 51/178 (28%), Positives = 87/178 (48%), Gaps = 6/178 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N+L+ +K+++ P TR R+ G VDT G+ + Sbjct: 11 IAIVGRPNVGKSTLLNQLLGQKISITSRKPQTTRHRIMGIHTEGPYQAIYVDTPGLHIEE 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN +I + L++F+++ TP D + + LR P+I+ NK+D Sbjct: 71 KRAINRLMNRAASSSIGDVELVIFVVEG-THWTPDDEMVLNKLRDLKCPVILAINKVDNV 129 Query: 125 IAQRNF-----YEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 + + + ++F ++V ISAE + ++ + Q + P E I + Sbjct: 130 VDKTALLPHIQFLSQQMNFLDVVPISAEKGTNVDAIARIVRQRLPQAEHHFPEEYITD 187 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 42/130 (32%), Positives = 64/130 (49%), Gaps = 5/130 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMR-KP 264 IA+VGRPNVGKSTL+N+LLG +T + TR + + DT G+ + Sbjct: 11 IAIVGRPNVGKSTLLNQLLGQKISITSRKPQTTRHRIMGIHTEGPYQAIYVDTPGLHIEE 70 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 R L + S+ V E I +++ T + D +++ + + V+LA+NK Sbjct: 71 KRAINRLMNRAASSSIGDV---ELVIFVVEGT-HWTPDDEMVLNKLRDLKCPVILAINKV 126 Query: 325 DMVSDKLNLL 334 D V DK LL Sbjct: 127 DNVVDKTALL 136 >gi|15642456|ref|NP_232089.1| GTP-binding protein Era [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121590984|ref|ZP_01678303.1| GTP-binding protein Era [Vibrio cholerae 2740-80] gi|153820071|ref|ZP_01972738.1| GTP-binding protein Era [Vibrio cholerae NCTC 8457] gi|227082581|ref|YP_002811132.1| GTP-binding protein Era [Vibrio cholerae M66-2] gi|229507480|ref|ZP_04396985.1| GTP-binding protein Era [Vibrio cholerae BX 330286] gi|229512325|ref|ZP_04401804.1| GTP-binding protein Era [Vibrio cholerae B33] gi|229519461|ref|ZP_04408904.1| GTP-binding protein Era [Vibrio cholerae RC9] gi|229606985|ref|YP_002877633.1| GTP-binding protein Era [Vibrio cholerae MJ-1236] gi|254849585|ref|ZP_05238935.1| GTP-binding protein Era [Vibrio cholerae MO10] gi|255746869|ref|ZP_05420814.1| GTP-binding protein Era [Vibrio cholera CIRS 101] gi|262162034|ref|ZP_06031050.1| GTP-binding protein Era [Vibrio cholerae INDRE 91/1] gi|262404773|ref|ZP_06081328.1| GTP-binding protein Era [Vibrio sp. RC586] gi|298500183|ref|ZP_07009988.1| GTP-binding protein Era [Vibrio cholerae MAK 757] gi|31340514|sp|Q9KPB3|ERA_VIBCH RecName: Full=GTPase Era gi|9657038|gb|AAF95602.1| GTP-binding protein Era [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121547161|gb|EAX57290.1| GTP-binding protein Era [Vibrio cholerae 2740-80] gi|126509383|gb|EAZ71977.1| GTP-binding protein Era [Vibrio cholerae NCTC 8457] gi|227010469|gb|ACP06681.1| GTP-binding protein Era [Vibrio cholerae M66-2] gi|229344150|gb|EEO09125.1| GTP-binding protein Era [Vibrio cholerae RC9] gi|229352290|gb|EEO17231.1| GTP-binding protein Era [Vibrio cholerae B33] gi|229354985|gb|EEO19906.1| GTP-binding protein Era [Vibrio cholerae BX 330286] gi|229369640|gb|ACQ60063.1| GTP-binding protein Era [Vibrio cholerae MJ-1236] gi|254845290|gb|EET23704.1| GTP-binding protein Era [Vibrio cholerae MO10] gi|255735271|gb|EET90671.1| GTP-binding protein Era [Vibrio cholera CIRS 101] gi|262028283|gb|EEY46940.1| GTP-binding protein Era [Vibrio cholerae INDRE 91/1] gi|262349805|gb|EEY98943.1| GTP-binding protein Era [Vibrio sp. RC586] gi|297540876|gb|EFH76930.1| GTP-binding protein Era [Vibrio cholerae MAK 757] Length = 325 Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 50/157 (31%), Positives = 84/157 (53%), Gaps = 8/157 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N L+ +K+++ P TR R+ G VDT G+ + Sbjct: 34 VAIVGRPNVGKSTLLNNLLGQKISITSRKPQTTRHRIMGVETDGNYQAIYVDTPGLHIEE 93 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN ++++ +L+LF+++ T D + + L+K N P+++ NK+D + Sbjct: 94 KRAINRLMNRAASSSLSDVNLVLFVVEG-THWTADDEMVFTKLQKANFPVVLCVNKVD-Q 151 Query: 125 IAQRNFYEIYSLD------FKEIVEISAEHDLGTSEL 155 + RN ++ L+ F +IV ISA+ T L Sbjct: 152 VKDRNEVMLHMLELSKRMQFVDIVPISAKQGKNTDVL 188 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 42/144 (29%), Positives = 63/144 (43%), Gaps = 8/144 (5%) Query: 191 SEGKSSVKNISKPLR---IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWN 247 SEGKS V + + +A+VGRPNVGKSTL+N LLG +T + TR + Sbjct: 16 SEGKSVVASTPENQHCGFVAIVGRPNVGKSTLLNNLLGQKISITSRKPQTTRHRIMGVET 75 Query: 248 WKNHPIEIFDTAGMR-KPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRI 306 N+ DT G+ + R L + S+ V ++ + + D + Sbjct: 76 DGNYQAIYVDTPGLHIEEKRAINRLMNRAASSSLSDV----NLVLFVVEGTHWTADDEMV 131 Query: 307 VDSVFNTGHAVVLALNKWDMVSDK 330 + VVL +NK D V D+ Sbjct: 132 FTKLQKANFPVVLCVNKVDQVKDR 155 >gi|74318103|ref|YP_315843.1| GTPase [Thiobacillus denitrificans ATCC 25259] gi|74057598|gb|AAZ98038.1| GTPase [Thiobacillus denitrificans ATCC 25259] Length = 297 Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 51/172 (29%), Positives = 86/172 (50%), Gaps = 11/172 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL NRLV +K+++ TR R+ G + F VDT G Sbjct: 12 VAIVGRPNVGKSTLLNRLVGQKVSITSRKAQTTRHRVMGIHTTDRAQFVFVDTPGFQTRH 71 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 ++ + MN + +++ +++ L+++ +T D + L K+ P+++V NK+D Sbjct: 72 TSTMNRAMNKRVRETLSDTDVVMMLVEA-GRLTREDRQVMELL-PKDRPLLLVVNKVDQA 129 Query: 124 --RIAQRNFYE--IYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHP 171 R A + + + F EIV +SA+ EL K ++ P +P Sbjct: 130 KDRAALMAYLQQVAAAHAFTEIVPVSAKQGSNLDEL----LKTLEKHLPENP 177 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/173 (26%), Positives = 86/173 (49%), Gaps = 11/173 (6%) Query: 199 NISKPLR---IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEI 255 N+S R +A+VGRPNVGKSTL+NRL+G +T ++ TR V Sbjct: 2 NVSTEYRCGLVAIVGRPNVGKSTLLNRLVGQKVSITSRKAQTTRHRVMGIHTTDRAQFVF 61 Query: 256 FDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGH 315 DT G + +R T ++ + K+ +++ + ++L++A ++D ++++ + Sbjct: 62 VDTPGFQ--TRHTSTMNRAMNKRVRETLSDTDVVMMLVEAG-RLTREDRQVME-LLPKDR 117 Query: 316 AVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLM 368 ++L +NK D D+ L+ L+ A + I +S + G LD+L+ Sbjct: 118 PLLLVVNKVDQAKDRAALMAYLQQVAAAH----AFTEIVPVSAKQGSNLDELL 166 >gi|327484952|gb|AEA79359.1| GTP-binding protein Era [Vibrio cholerae LMA3894-4] Length = 325 Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 52/177 (29%), Positives = 91/177 (51%), Gaps = 8/177 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N L+ +K+++ P TR R+ G VDT G+ + Sbjct: 34 VAIVGRPNVGKSTLLNNLLGQKISITSRKPQTTRHRIMGVETEGKYQAIYVDTPGLHIEE 93 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN ++++ +L+LF+++ T D + + L+K N P+++ NK+D + Sbjct: 94 KRAINRLMNRAASSSLSDVNLVLFVVEG-THWTADDEMVFNKLQKANFPVVLCVNKVD-Q 151 Query: 125 IAQRNFYEIYSLD------FKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 + RN ++ L+ F +IV ISA+ T L + + + + P E + Sbjct: 152 VKDRNEVMLHMLELSKRMPFVDIVPISAKQGKNTDVLKKHVREHLPKAVHHFPEEYV 208 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 50/188 (26%), Positives = 84/188 (44%), Gaps = 14/188 (7%) Query: 191 SEGKSSVKNISKPLR---IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV-SISW 246 SEG+++ + + +A+VGRPNVGKSTL+N LLG +T + TR + + Sbjct: 16 SEGQTTATSTPEDQHCGFVAIVGRPNVGKSTLLNNLLGQKISITSRKPQTTRHRIMGVET 75 Query: 247 NWKNHPIEIFDTAGMR-KPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLR 305 K I + DT G+ + R L + S+ V ++ + + D Sbjct: 76 EGKYQAIYV-DTPGLHIEEKRAINRLMNRAASSSLSDV----NLVLFVVEGTHWTADDEM 130 Query: 306 IVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLD 365 + + + VVL +NK D V D+ ++ + + K +P + I IS + G+ D Sbjct: 131 VFNKLQKANFPVVLCVNKVDQVKDRNEVMLHM-LELSKRMPFVD---IVPISAKQGKNTD 186 Query: 366 DLMVSVLE 373 L V E Sbjct: 187 VLKKHVRE 194 >gi|326569041|gb|EGE19110.1| tRNA modification GTPase TrmE [Moraxella catarrhalis BC1] Length = 466 Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 50/175 (28%), Positives = 88/175 (50%), Gaps = 23/175 (13%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 + + + G+PN GKS+L+NRL G R + +G TRD++ + + + DTAG+RK Sbjct: 221 VHVVLAGKPNAGKSSLLNRLSGTERAIVTEIAGTTRDTLEETLILNGLTVHLTDTAGLRK 280 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTG--------- 314 + +E+ +K++ ++R + +++ D T E L + D +F G Sbjct: 281 TD---DHVEKIGIKRAFDAIRQADVLMMVYDLTT--ETDPLALADQLFCEGVTEDVGDII 335 Query: 315 -HAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLM 368 ++L NK D++ K L TK++ L +Y +S TGEGLD+L+ Sbjct: 336 RQKLILVANKSDLLVSKPVLQVSCETKSVPKL-----VY---VSCETGEGLDELI 382 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 53/191 (27%), Positives = 84/191 (43%), Gaps = 40/191 (20%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + + G PN GKS+L NRL + A+V G TRD L I+NG+ ++ DTAG+ Sbjct: 223 VVLAGKPNAGKSSLLNRLSGTERAIVTEIAGTTRDTLEETLILNGLTVHLTDTAGL---- 278 Query: 65 NCSIAKQMNDQTEL--------AINEAHLILFLIDSKAGITPYDHA-----------ITS 105 ++ +D E AI +A +++ + D P A + Sbjct: 279 -----RKTDDHVEKIGIKRAFDAIRQADVLMMVYDLTTETDPLALADQLFCEGVTEDVGD 333 Query: 106 FLRKKNIPIIIVSNKMDTRIAQRNFYEIYSLDFKEI---VEISAEHDLGTSELHSVIFKI 162 +R+K +I+V+NK D +++ S + K + V +S E G EL +I Sbjct: 334 IIRQK---LILVANKSDLLVSKPVLQ--VSCETKSVPKLVYVSCETGEGLDEL----IEI 384 Query: 163 FKQKYPNHPLE 173 QK HP E Sbjct: 385 LTQKVGFHPPE 395 >gi|297570497|ref|YP_003691841.1| tRNA modification GTPase TrmE [Desulfurivibrio alkaliphilus AHT2] gi|296926412|gb|ADH87222.1| tRNA modification GTPase TrmE [Desulfurivibrio alkaliphilus AHT2] Length = 474 Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 52/175 (29%), Positives = 91/175 (52%), Gaps = 10/175 (5%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+ I+G PNVGKS+L N L++ + A+V PG TRD + I+G+ IVDTAGI + Sbjct: 231 TVVILGRPNVGKSSLLNALLQDERAIVTAIPGTTRDTIEECLNIHGMPLRIVDTAGIRET 290 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD- 122 + +++ + EA L+L L+++ + + D A+ +R+K +++V NK+D Sbjct: 291 TE-EVEGIGIERSRRRVAEADLVLLLVEAGSEPSSEDMALFDSVREKK--VLVVVNKLDL 347 Query: 123 ----TRIAQRNFYEIYSLDF--KEIVEISAEHDLGTSELHSVIFKIFKQKYPNHP 171 + A + F +E+ ISA +G +L ++F++ P P Sbjct: 348 LGDASPAAAEAALAAWRHRFPGRELTGISARARVGLEQLEDLVFRLISGDEPRDP 402 Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 49/170 (28%), Positives = 83/170 (48%), Gaps = 22/170 (12%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 + ++GRPNVGKS+L+N LL R + + G TRD++ N P+ I DTAG+R+ Sbjct: 232 VVILGRPNVGKSSLLNALLQDERAIVTAIPGTTRDTIEECLNIHGMPLRIVDTAGIRE-- 289 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 TE +E +++S + V + ++L++A +D+ + DSV V++ +NK D Sbjct: 290 -TTEEVEGIGIERSRRRVAEADLVLLLVEAGSEPSSEDMALFDSVRE--KKVLVVVNKLD 346 Query: 326 MVSDKLNL-----------------LQDLRTKAIKNLPQIGDIYINTISG 358 ++ D L + +A L Q+ D+ ISG Sbjct: 347 LLGDASPAAAEAALAAWRHRFPGRELTGISARARVGLEQLEDLVFRLISG 396 >gi|122702417|emb|CAL88399.1| GTPase [Helicobacter pylori] Length = 168 Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 54/159 (33%), Positives = 82/159 (51%), Gaps = 6/159 (3%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAI+G PNVGKS+LFN L K+++A+ + G TRD + +NG ++DT G+A Sbjct: 7 TIAILGQPNVGKSSLFNCLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA-- 64 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSNKM 121 K+ ++K++ A + LIL+++D K+ P D I F + K N +V NK+ Sbjct: 65 KDAFLSKEIKAFNLKAAQMSDLILYVVDGKS--IPSDEDIKLFREVFKINPNCFLVINKI 122 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 D + Y S + IS H+ G S L I Sbjct: 123 DNDKEKERTYAFSSFGMPKSFNISVSHNRGISVLIDAIL 161 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 38/128 (29%), Positives = 65/128 (50%), Gaps = 6/128 (4%) Query: 199 NISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDT 258 N S IA++G+PNVGKS+L N L +T +G TRD H +E+ DT Sbjct: 1 NTSTLKTIAILGQPNVGKSSLFNCLAKERIAITSDFAGTTRDINKRKIALNGHEVELLDT 60 Query: 259 AGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAV 317 GM K + +++ ++ +K + S + + ++D +IP + +D+++ VF Sbjct: 61 GGMAKDAFLSKEIKAFNLKAAQMS----DLILYVVDGKSIPSD-EDIKLFREVFKINPNC 115 Query: 318 VLALNKWD 325 L +NK D Sbjct: 116 FLVINKID 123 >gi|237743154|ref|ZP_04573635.1| thiophene and furan oxidation protein THDF [Fusobacterium sp. 7_1] gi|229433450|gb|EEO43662.1| thiophene and furan oxidation protein THDF [Fusobacterium sp. 7_1] Length = 455 Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 48/159 (30%), Positives = 87/159 (54%), Gaps = 7/159 (4%) Query: 171 PLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLL 230 P +++N K+ K+ ++S K + I ++ A++G+PNVGKS+++N LL +R + Sbjct: 189 PENLVDNLKKASAEIKDLVSSYDKGKI--IKDGIKTAIIGKPNVGKSSILNSLLREDRAI 246 Query: 231 TGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTI 290 G TRD + N P+ + DTAG+R I E++ V+KS + + + + + Sbjct: 247 VTHIPGTTRDIIEEVININGIPLLLVDTAGIRNTDDIIENI---GVEKSKELINSADLIL 303 Query: 291 VLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSD 329 ++D + +++D RI D + NT V+ LNK D+ D Sbjct: 304 YVIDTSRKIDEEDFRIYD-IINT-DKVIGILNKIDIKKD 340 Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 56/158 (35%), Positives = 84/158 (53%), Gaps = 10/158 (6%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS++ N L+++ A+V + PG TRD + ING+ +VDTAGI + + Sbjct: 223 AIIGKPNVGKSSILNSLLREDRAIVTHIPGTTRDIIEEVININGIPLLLVDTAGIRNTDD 282 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR- 124 + EL IN A LIL++ID+ I D I + +I + NK+D + Sbjct: 283 IIENIGVEKSKEL-INSADLILYVIDTSRKIDEEDFRIYDIINTD--KVIGILNKIDIKK 339 Query: 125 -IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 I F +I ++ VEISA +G L + I+K Sbjct: 340 DIDLSKFSKI-----EKWVEISALSKIGIDNLENEIYK 372 >gi|170767223|ref|ZP_02901676.1| GTP-binding protein Era [Escherichia albertii TW07627] gi|170123557|gb|EDS92488.1| GTP-binding protein Era [Escherichia albertii TW07627] Length = 301 Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 51/178 (28%), Positives = 88/178 (49%), Gaps = 6/178 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N+L+ +K+++ TR R+ G VDT G+ + Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN +I + L++F+++ TP D + + LR P+I+ NK+D Sbjct: 71 KRAINRLMNRAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLRDGKAPVILAVNKVDNV 129 Query: 125 IAQRNF-----YEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 + + + ++F +IV ISAE L + +++ K + + P + I + Sbjct: 130 QEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPEATHHFPEDYITD 187 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 51/167 (30%), Positives = 84/167 (50%), Gaps = 9/167 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS-VSISWNWKNHPIEIFDTAGMRKP 264 IA+VGRPNVGKSTL+N+LLG +T ++ TR V I I + DT G+ Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYV-DTPGLHME 69 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 + ++ + + + S+ E I +++ T + D +++ + + V+LA+NK Sbjct: 70 EK--RAINRLMNRAASSSIGDVELVIFVVEGT-RWTPDDEMVLNKLRDGKAPVILAVNKV 126 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSV 371 D V +K +LL L+ A Q+ + I IS TG +D + V Sbjct: 127 DNVQEKADLLPHLQFLA----SQMNFLDIVPISAETGLNVDTIAAIV 169 >gi|300727852|ref|ZP_07061232.1| tRNA modification GTPase TrmE [Prevotella bryantii B14] gi|299774900|gb|EFI71512.1| tRNA modification GTPase TrmE [Prevotella bryantii B14] Length = 454 Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 56/169 (33%), Positives = 89/169 (52%), Gaps = 30/169 (17%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G NVGKSTL N+L+ ++ A+V + G TRD + I+GV F +DTAGI Sbjct: 222 VAIIGKTNVGKSTLLNQLLHEEKAIVSDIDGTTRDVIEDTIDIHGVNFRFIDTAGI---- 277 Query: 65 NCSIAKQMNDQTE--------LAINEAHLILFLIDSKAGITPYDHAITSFL-RKKNIPII 115 +Q D+ E + EA ++L+++D++ P + R K +I Sbjct: 278 -----RQTEDKVEQIGIKRAYQKLEEATIVLWILDNQ----PSKEEVLDIQNRTKEKQVI 328 Query: 116 IVSNKMDTR-IAQRNFYEIYSLDFKEIVE--ISAEHDLGTSELHSVIFK 161 I+SNKMD + + NFY DF+ E ISA+ +G +EL +++ Sbjct: 329 ILSNKMDIKPQSSYNFY-----DFRPFAELQISAKEGIGITELEQKLYE 372 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 5/87 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++G+ NVGKSTL+N+LL + + G TRD + + + DTAG+R+ Sbjct: 222 VAIIGKTNVGKSTLLNQLLHEEKAIVSDIDGTTRDVIEDTIDIHGVNFRFIDTAGIRQTE 281 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVL 292 + +EQ +K++ Q + E TIVL Sbjct: 282 ---DKVEQIGIKRAYQKLE--EATIVL 303 >gi|326563099|gb|EGE13372.1| tRNA modification GTPase TrmE [Moraxella catarrhalis 12P80B1] Length = 466 Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 51/175 (29%), Positives = 87/175 (49%), Gaps = 23/175 (13%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 + + + G+PN GKS+L+NRL G R + +G TRD++ + + + DTAG+RK Sbjct: 221 VHVVLAGKPNAGKSSLLNRLSGTERAIVTEIAGTTRDTLEETLILNGLTVHLTDTAGLRK 280 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTG--------- 314 + +E+ +K++ ++R + I++ D T E L + D +F G Sbjct: 281 TD---DHVEKIGIKRAFDAIRQADVLIMVYDVTT--ETDPLALADQLFCEGVTEDVGDII 335 Query: 315 -HAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLM 368 ++L NK D++ K L TK+ L +Y +S TGEGLD+L+ Sbjct: 336 RQKLILVANKSDLLISKPVLQVSCETKSAPKL-----VY---VSCETGEGLDELI 382 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 54/191 (28%), Positives = 85/191 (44%), Gaps = 40/191 (20%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + + G PN GKS+L NRL + A+V G TRD L I+NG+ ++ DTAG+ Sbjct: 223 VVLAGKPNAGKSSLLNRLSGTERAIVTEIAGTTRDTLEETLILNGLTVHLTDTAGL---- 278 Query: 65 NCSIAKQMNDQTEL--------AINEAHLILFLIDSKAGITPYDHA-----------ITS 105 ++ +D E AI +A +++ + D P A + Sbjct: 279 -----RKTDDHVEKIGIKRAFDAIRQADVLIMVYDVTTETDPLALADQLFCEGVTEDVGD 333 Query: 106 FLRKKNIPIIIVSNKMDTRIAQRNFYEIYSLDFK---EIVEISAEHDLGTSELHSVIFKI 162 +R+K +I+V+NK D I++ S + K ++V +S E G EL +I Sbjct: 334 IIRQK---LILVANKSDLLISKPVLQ--VSCETKSAPKLVYVSCETGEGLDEL----IEI 384 Query: 163 FKQKYPNHPLE 173 QK HP E Sbjct: 385 LTQKVGFHPPE 395 >gi|294784390|ref|ZP_06749681.1| tRNA modification GTPase TrmE [Fusobacterium sp. 3_1_27] gi|294487962|gb|EFG35317.1| tRNA modification GTPase TrmE [Fusobacterium sp. 3_1_27] Length = 455 Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 48/159 (30%), Positives = 87/159 (54%), Gaps = 7/159 (4%) Query: 171 PLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLL 230 P +++N K+ K+ ++S K + I ++ A++G+PNVGKS+++N LL +R + Sbjct: 189 PENLVDNLKKASAEIKDLVSSYDKGKI--IKDGIKTAIIGKPNVGKSSILNSLLREDRAI 246 Query: 231 TGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTI 290 G TRD + N P+ + DTAG+R I E++ V+KS + + + + + Sbjct: 247 VTHIPGTTRDIIEEVININGIPLLLVDTAGIRNTDDIVENI---GVEKSKELINSADLIL 303 Query: 291 VLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSD 329 ++D + +++D RI D + NT V+ LNK D+ D Sbjct: 304 YVIDTSREIDEEDYRIYD-IINT-DKVIGILNKIDIKKD 340 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 59/182 (32%), Positives = 96/182 (52%), Gaps = 11/182 (6%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS++ N L+++ A+V + PG TRD + ING+ +VDTAGI + + Sbjct: 223 AIIGKPNVGKSSILNSLLREDRAIVTHIPGTTRDIIEEVININGIPLLLVDTAGIRNTDD 282 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR- 124 + EL IN A LIL++ID+ I D+ I + +I + NK+D + Sbjct: 283 IVENIGVEKSKEL-INSADLILYVIDTSREIDEEDYRIYDIINTD--KVIGILNKIDIKK 339 Query: 125 -IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK-IFKQKYPNHPLEMIENNKRNE 182 I F +I ++ +EISA LG L + I+K I + + +++ N R++ Sbjct: 340 DIDLTKFPKI-----EKWIEISALSKLGIDNLENEIYKYIMNENVEDSSQKLVITNVRHK 394 Query: 183 ES 184 + Sbjct: 395 SA 396 >gi|258626728|ref|ZP_05721550.1| GTP-binding protein [Vibrio mimicus VM603] gi|258580984|gb|EEW05911.1| GTP-binding protein [Vibrio mimicus VM603] Length = 324 Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 52/177 (29%), Positives = 91/177 (51%), Gaps = 8/177 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N L+ +K+++ P TR R+ G VDT G+ + Sbjct: 33 VAIVGRPNVGKSTLLNNLLGQKISITSRKPQTTRHRIMGVETDGNYQAIYVDTPGLHIEE 92 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN ++++ +L+LF+++ T D + + L+K N P+++ NK+D + Sbjct: 93 KRAINRLMNRAASSSLSDVNLVLFVVEG-THWTADDEMVFNKLQKANFPVVLCVNKVD-Q 150 Query: 125 IAQRNFYEIYSLD------FKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 + RN ++ L+ F +IV ISA+ T L + + + + P E + Sbjct: 151 VKDRNEVMLHMLELSKRMQFVDIVPISAKQGKNTDVLKKHVREHLPKAVHHFPEEYV 207 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 72/169 (42%), Gaps = 9/169 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMR-KP 264 +A+VGRPNVGKSTL+N LLG +T + TR + N+ DT G+ + Sbjct: 33 VAIVGRPNVGKSTLLNNLLGQKISITSRKPQTTRHRIMGVETDGNYQAIYVDTPGLHIEE 92 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 R L + S+ V ++ + + D + + + VVL +NK Sbjct: 93 KRAINRLMNRAASSSLSDV----NLVLFVVEGTHWTADDEMVFNKLQKANFPVVLCVNKV 148 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 D V D+ ++ L + Q DI IS + G+ D L V E Sbjct: 149 DQVKDRNEVM--LHMLELSKRMQFVDIV--PISAKQGKNTDVLKKHVRE 193 >gi|258622344|ref|ZP_05717369.1| GTP-binding protein [Vibrio mimicus VM573] gi|262170591|ref|ZP_06038269.1| GTP-binding protein Era [Vibrio mimicus MB-451] gi|258585360|gb|EEW10084.1| GTP-binding protein [Vibrio mimicus VM573] gi|261891667|gb|EEY37653.1| GTP-binding protein Era [Vibrio mimicus MB-451] Length = 324 Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 50/157 (31%), Positives = 84/157 (53%), Gaps = 8/157 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N L+ +K+++ P TR R+ G VDT G+ + Sbjct: 33 VAIVGRPNVGKSTLLNNLLGQKISITSRKPQTTRHRIMGVETDGNYQAIYVDTPGLHIEE 92 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN ++++ +L+LF+++ T D + + L+K N P+++ NK+D + Sbjct: 93 KRAINRLMNRAASSSLSDVNLVLFVVEG-THWTADDEMVFNKLQKANFPVVLCVNKVD-Q 150 Query: 125 IAQRNFYEIYSLD------FKEIVEISAEHDLGTSEL 155 + RN ++ L+ F +IV ISA+ T L Sbjct: 151 VKDRNEVMLHMLELSKRMQFVDIVPISAKQGKNTDVL 187 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 36/126 (28%), Positives = 56/126 (44%), Gaps = 5/126 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMR-KP 264 +A+VGRPNVGKSTL+N LLG +T + TR + N+ DT G+ + Sbjct: 33 VAIVGRPNVGKSTLLNNLLGQKISITSRKPQTTRHRIMGVETDGNYQAIYVDTPGLHIEE 92 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 R L + S+ V ++ + + D + + + VVL +NK Sbjct: 93 KRAINRLMNRAASSSLSDV----NLVLFVVEGTHWTADDEMVFNKLQKANFPVVLCVNKV 148 Query: 325 DMVSDK 330 D V D+ Sbjct: 149 DQVKDR 154 >gi|261820520|ref|YP_003258626.1| GTP-binding protein Era [Pectobacterium wasabiae WPP163] gi|261604533|gb|ACX87019.1| GTP-binding protein Era [Pectobacterium wasabiae WPP163] Length = 301 Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 54/183 (29%), Positives = 91/183 (49%), Gaps = 20/183 (10%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYG-------QAIINGVIFNIVDT 57 +AIVG PNVGKSTL N+L+ +K+++ P TR R+ G QAI VDT Sbjct: 11 VAIVGRPNVGKSTLLNQLLGQKISITSRKPQTTRHRIMGIHTEGPYQAI-------YVDT 63 Query: 58 AGIADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIV 117 G+ + +I + MN +I + LI+F+++ D + + LR + +P+++ Sbjct: 64 PGLHIEEKRAINRLMNRAASSSIGDVELIIFVVEG-THWNDDDDMVLNKLRDQKLPVLLA 122 Query: 118 SNKMD-----TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPL 172 NK+D T++ + +DF ++V ISAE + S++ K Q + P Sbjct: 123 INKVDNVTDKTKLLPHIQFLSQQMDFLDVVPISAEKGTNVDTIASIVRKHLPQATHHFPE 182 Query: 173 EMI 175 + I Sbjct: 183 DYI 185 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 41/130 (31%), Positives = 66/130 (50%), Gaps = 5/130 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMR-KP 264 +A+VGRPNVGKSTL+N+LLG +T + TR + + DT G+ + Sbjct: 11 VAIVGRPNVGKSTLLNQLLGQKISITSRKPQTTRHRIMGIHTEGPYQAIYVDTPGLHIEE 70 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 R L + S+ V E I +++ T + D+ +++ + + V+LA+NK Sbjct: 71 KRAINRLMNRAASSSIGDV---ELIIFVVEGTHWNDDDDM-VLNKLRDQKLPVLLAINKV 126 Query: 325 DMVSDKLNLL 334 D V+DK LL Sbjct: 127 DNVTDKTKLL 136 >gi|13509047|emb|CAC35274.1| GTP binding protein homologue [Campylobacter jejuni] Length = 190 Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 57/192 (29%), Positives = 98/192 (51%), Gaps = 9/192 (4%) Query: 233 SQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVL 292 S +G T D V+ S K+ IE DTAG+RK +I + LE+ + ++ + + + +++ Sbjct: 3 SIAGTTIDPVNESVVHKDKVIEFVDTAGIRKRGKI-QGLERFALNRTEKILSHSQIALLV 61 Query: 293 LDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD---MVSDKLNLLQDLRTKAIKNLPQIG 349 LDA F + D RI V V++ LNKWD M DK +++LR K L Sbjct: 62 LDAHEGFNELDERIAGLVAKHYLGVIIVLNKWDKSEMDFDKT--VKELRLDRFKFLAYAP 119 Query: 350 DIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNR 409 I ++ +SG+ L D +L+I + + +I TS LN+ ++ +P P + + + Sbjct: 120 VISVSALSGKRVHVLLD---KILQIFENFTQKIQTSKLNTLIENATRAHPLPHDYGKLVK 176 Query: 410 LKYITQIQSSPP 421 + Y+ Q +PP Sbjct: 177 IYYVVQYDLAPP 188 Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust. Identities = 42/173 (24%), Positives = 71/173 (41%), Gaps = 18/173 (10%) Query: 30 VGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD-GKNCSIAKQMNDQTELAINEAHLILF 88 V + G T D + + + VDTAGI GK + + ++TE ++ + + L Sbjct: 1 VSSIAGTTIDPVNESVVHKDKVIEFVDTAGIRKRGKIQGLERFALNRTEKILSHSQIALL 60 Query: 89 LIDSKAGITPYDHAITSFLRKKNIPIIIVSNK-------MDTRIAQRNFYEIYSLDFKEI 141 ++D+ G D I + K + +IIV NK D + + L + + Sbjct: 61 VLDAHEGFNELDERIAGLVAKHYLGVIIVLNKWDKSEMDFDKTVKELRLDRFKFLAYAPV 120 Query: 142 VEISAEHDLGTSELHSV------IFKIFKQKYPNHPLE-MIENNKRNEESPKE 187 + +SA L +H + IF+ F QK L +IEN R P + Sbjct: 121 ISVSA---LSGKRVHVLLDKILQIFENFTQKIQTSKLNTLIENATRAHPLPHD 170 >gi|134299998|ref|YP_001113494.1| small GTP-binding protein [Desulfotomaculum reducens MI-1] gi|134052698|gb|ABO50669.1| iron-only hydrogenase maturation protein HydF [Desulfotomaculum reducens MI-1] Length = 409 Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 51/160 (31%), Positives = 84/160 (52%), Gaps = 10/160 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLY-GQAIINGVIFNIVDTAGIADG 63 IAI G N GKS+L N L + +AVV N PG T D +Y I+ I+DTAGI D Sbjct: 12 IAIFGRRNAGKSSLINALTSQDIAVVSNIPGTTTDPVYKAMEILPVGPVVIIDTAGIDDS 71 Query: 64 KNCS---IAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + + + M+ +N+A ++L +ID+ +G+T Y+ I ++K +P+++V NK Sbjct: 72 GDLGELRVKRSMD-----VLNKADMVLLVIDAGSGVTDYELKIARRCQEKKLPVVVVFNK 126 Query: 121 MDT-RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVI 159 +D + ++ E + V +SA + G +L I Sbjct: 127 IDAHHVTEQQIEEAKTQLAGPTVVVSALNGQGIGDLKIAI 166 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 44/170 (25%), Positives = 77/170 (45%), Gaps = 13/170 (7%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWN-WKNHPIEIFDTAGMR 262 L IA+ GR N GKS+LIN L + + + G T D V + P+ I DTAG+ Sbjct: 10 LHIAIFGRRNAGKSSLINALTSQDIAVVSNIPGTTTDPVYKAMEILPVGPVVIIDTAGID 69 Query: 263 KPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALN 322 + L + VK+SM + + ++++DA +L+I VV+ N Sbjct: 70 D----SGDLGELRVKRSMDVLNKADMVLLVIDAGSGVTDYELKIARRCQEKKLPVVVVFN 125 Query: 323 KWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVL 372 K D +++ +T+ P + +S G+G+ DL ++++ Sbjct: 126 KIDAHHVTEQQIEEAKTQLAG--PTV------VVSALNGQGIGDLKIAIV 167 >gi|325104167|ref|YP_004273821.1| tRNA modification GTPase trmE [Pedobacter saltans DSM 12145] gi|324973015|gb|ADY51999.1| tRNA modification GTPase trmE [Pedobacter saltans DSM 12145] Length = 455 Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 59/183 (32%), Positives = 92/183 (50%), Gaps = 7/183 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + I G PNVGKSTL N L+ ++ A+V + G TRD + + + GVIF +DTAGI + + Sbjct: 223 VVIAGKPNVGKSTLLNALLNEERAIVSDIAGTTRDTIEDEINVKGVIFRFIDTAGIRETQ 282 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + AK + ++T I +A L+++L D ++ NIP ++V NK D Sbjct: 283 DVIEAKGV-ERTLEKIKQARLLVYLADPIQDDFAAVKEQLDEVKAYNIPYLLVVNKKDLL 341 Query: 125 IAQR-NFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 A++ Y S F ISA+++LG EL + +I N M+ N + E Sbjct: 342 SAEQIEAYSQLSPLF-----ISAKNNLGVDELKDRLLEIVNLANLNSEDVMVSNIRHVEA 396 Query: 184 SPK 186 K Sbjct: 397 LQK 399 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 55/192 (28%), Positives = 92/192 (47%), Gaps = 24/192 (12%) Query: 189 ITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNW 248 ITS + +V P+ IA G+PNVGKSTL+N LL R + +G TRD++ N Sbjct: 208 ITSFDQGNVLKNGVPVVIA--GKPNVGKSTLLNALLNEERAIVSDIAGTTRDTIEDEINV 265 Query: 249 KNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRI-- 306 K DTAG+R+ + E+ K V+++++ ++ + L D P + + Sbjct: 266 KGVIFRFIDTAGIRETQDVIEA---KGVERTLEKIKQARLLVYLAD---PIQDDFAAVKE 319 Query: 307 -VDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLD 365 +D V +L +NK D++S + I+ Q+ ++ IS + G+D Sbjct: 320 QLDEVKAYNIPYLLVVNKKDLLS----------AEQIEAYSQLSPLF---ISAKNNLGVD 366 Query: 366 DLMVSVLEINKL 377 +L +LEI L Sbjct: 367 ELKDRLLEIVNL 378 >gi|289804516|ref|ZP_06535145.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 192 Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 51/178 (28%), Positives = 88/178 (49%), Gaps = 6/178 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N+L+ +K+++ TR R+ G VDT G+ + Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGPYQAIYVDTPGLHMEE 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN +I + L++F+++ TP D + + LR P+I+ NK+D Sbjct: 71 KRAINRLMNKAASSSIGDVELVIFVVEGTRW-TPDDEMVLNKLRDGKAPVILAVNKVDNV 129 Query: 125 IAQRNF-----YEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 + + + ++F +IV ISAE + + S++ K + + P + I + Sbjct: 130 QEKADLLPHLQFLASQMNFLDIVPISAETGMNVDTIASIVRKHLPEAIHHFPEDYITD 187 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 51/161 (31%), Positives = 82/161 (50%), Gaps = 9/161 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS-VSISWNWKNHPIEIFDTAGMRKP 264 IA+VGRPNVGKSTL+N+LLG +T ++ TR V I I + DT G+ Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGPYQAIYV-DTPGLHME 69 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 + ++ + K + S+ E I +++ T + D +++ + + V+LA+NK Sbjct: 70 EK--RAINRLMNKAASSSIGDVELVIFVVEGT-RWTPDDEMVLNKLRDGKAPVILAVNKV 126 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLD 365 D V +K +LL L+ A Q+ + I IS TG +D Sbjct: 127 DNVQEKADLLPHLQFLA----SQMNFLDIVPISAETGMNVD 163 >gi|298243558|ref|ZP_06967365.1| tRNA modification GTPase TrmE [Ktedonobacter racemifer DSM 44963] gi|297556612|gb|EFH90476.1| tRNA modification GTPase TrmE [Ktedonobacter racemifer DSM 44963] Length = 474 Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 55/182 (30%), Positives = 91/182 (50%), Gaps = 23/182 (12%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 LR A++GRPNVGKS+L+N LL R + +G TRD+V N + P+ + DTAG+ Sbjct: 224 LRTAIIGRPNVGKSSLLNALLRIERAIVTPIAGTTRDTVEEIANLRGIPLHLIDTAGI-T 282 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHA------- 316 P++ + +EQ V++S + T + + + D +QD ++ + G+ Sbjct: 283 PTQ--DPVEQLGVQRSRLAAETADVILHVFDGATALTEQDWQVAQELRAMGYGEKREGQA 340 Query: 317 ----VVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVL 372 VV+ +NK D Q + AI++ Q D + S TGEGL+ L ++ Sbjct: 341 ARRPVVVVINKADCE-------QVIDVAAIQSFWQ--DASLVQTSTLTGEGLEALENTLA 391 Query: 373 EI 374 E+ Sbjct: 392 EL 393 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 46/148 (31%), Positives = 74/148 (50%), Gaps = 19/148 (12%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L++ + A+V G TRD + A + G+ +++DTAGI ++ Sbjct: 227 AIIGRPNVGKSSLLNALLRIERAIVTPIAGTTRDTVEEIANLRGIPLHLIDTAGITPTQD 286 Query: 66 CSIAKQMNDQ-TELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNI-----------P 113 +Q+ Q + LA A +IL + D +T D + LR P Sbjct: 287 P--VEQLGVQRSRLAAETADVILHVFDGATALTEQDWQVAQELRAMGYGEKREGQAARRP 344 Query: 114 IIIVSNKMDTR-----IAQRNFYEIYSL 136 +++V NK D A ++F++ SL Sbjct: 345 VVVVINKADCEQVIDVAAIQSFWQDASL 372 >gi|262166501|ref|ZP_06034238.1| GTP-binding protein Era [Vibrio mimicus VM223] gi|262026217|gb|EEY44885.1| GTP-binding protein Era [Vibrio mimicus VM223] Length = 324 Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 50/157 (31%), Positives = 84/157 (53%), Gaps = 8/157 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N L+ +K+++ P TR R+ G VDT G+ + Sbjct: 33 VAIVGRPNVGKSTLLNNLLGQKISITSRKPQTTRHRIMGVETDGNYQAIYVDTPGLHIEE 92 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN ++++ +L+LF+++ T D + + L+K N P+++ NK+D + Sbjct: 93 KRAINRLMNRAASSSLSDVNLVLFVVEG-THWTADDEMVFNKLQKANFPVVLCVNKVD-Q 150 Query: 125 IAQRNFYEIYSLD------FKEIVEISAEHDLGTSEL 155 + RN ++ L+ F +IV ISA+ T L Sbjct: 151 VKDRNEVMLHMLELSKRMQFVDIVPISAKQGKNTDVL 187 Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust. Identities = 36/126 (28%), Positives = 56/126 (44%), Gaps = 5/126 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMR-KP 264 +A+VGRPNVGKSTL+N LLG +T + TR + N+ DT G+ + Sbjct: 33 VAIVGRPNVGKSTLLNNLLGQKISITSRKPQTTRHRIMGVETDGNYQAIYVDTPGLHIEE 92 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 R L + S+ V ++ + + D + + + VVL +NK Sbjct: 93 KRAINRLMNRAASSSLSDV----NLVLFVVEGTHWTADDEMVFNKLQKANFPVVLCVNKV 148 Query: 325 DMVSDK 330 D V D+ Sbjct: 149 DQVKDR 154 >gi|242255946|gb|ACS88957.1| GTPase [Helicobacter pylori] Length = 170 Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 52/161 (32%), Positives = 83/161 (51%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G NVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQSNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G S L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAIL 163 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 63/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+ NVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQSNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|227543714|ref|ZP_03973763.1| tRNA modification GTP-binding protein TrmE [Lactobacillus reuteri CF48-3A] gi|300908779|ref|ZP_07126242.1| tRNA modification GTPase TrmE [Lactobacillus reuteri SD2112] gi|227186282|gb|EEI66353.1| tRNA modification GTP-binding protein TrmE [Lactobacillus reuteri CF48-3A] gi|300894186|gb|EFK87544.1| tRNA modification GTPase TrmE [Lactobacillus reuteri SD2112] Length = 477 Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 58/177 (32%), Positives = 89/177 (50%), Gaps = 12/177 (6%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+ + A+V N G TRD + +NGV ++DTAGI D N Sbjct: 242 AIIGQPNVGKSSLLNSLLHEDKAIVTNVAGTTRDVIEEYVNVNGVPLKLIDTAGIRD-TN 300 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 + K +++ A+ A L+L LIDS +T D + + K II+ + ++ Sbjct: 301 DQVEKIGVERSRKALGAADLVLLLIDSSNELTDEDRQLLEATKDKQRIIILNKTDLPRKV 360 Query: 126 AQRNFYEIYSLDFKE-IVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 + E+ SL K ++E S + G +L I +F K IE+N+ N Sbjct: 361 ---DLEELKSLAGKSAVIETSIVNHEGMDQLGEQIGHMFFNKG-------IESNQNN 407 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 35/129 (27%), Positives = 76/129 (58%), Gaps = 5/129 (3%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + L A++G+PNVGKS+L+N LL ++ + + +G TRD + N P+++ D Sbjct: 233 KVLRDGLATAIIGQPNVGKSSLLNSLLHEDKAIVTNVAGTTRDVIEEYVNVNGVPLKLID 292 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R + + +E+ V++S +++ + ++L+D++ +D +++++ + + Sbjct: 293 TAGIRDTN---DQVEKIGVERSRKALGAADLVLLLIDSSNELTDEDRQLLEATKDKQRII 349 Query: 318 VLALNKWDM 326 + LNK D+ Sbjct: 350 I--LNKTDL 356 >gi|121728973|ref|ZP_01681977.1| GTP-binding protein Era [Vibrio cholerae V52] gi|147674346|ref|YP_001217962.1| GTP-binding protein Era [Vibrio cholerae O395] gi|262167291|ref|ZP_06035001.1| GTP-binding protein Era [Vibrio cholerae RC27] gi|121628739|gb|EAX61206.1| GTP-binding protein Era [Vibrio cholerae V52] gi|146316229|gb|ABQ20768.1| GTP-binding protein Era [Vibrio cholerae O395] gi|227014352|gb|ACP10562.1| GTP-binding protein Era [Vibrio cholerae O395] gi|262024266|gb|EEY42957.1| GTP-binding protein Era [Vibrio cholerae RC27] Length = 324 Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 50/157 (31%), Positives = 84/157 (53%), Gaps = 8/157 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N L+ +K+++ P TR R+ G VDT G+ + Sbjct: 33 VAIVGRPNVGKSTLLNNLLGQKISITSRKPQTTRHRIMGVETDGNYQAIYVDTPGLHIEE 92 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN ++++ +L+LF+++ T D + + L+K N P+++ NK+D + Sbjct: 93 KRAINRLMNRAASSSLSDVNLVLFVVEG-THWTADDEMVFNKLQKANFPVVLCVNKVD-Q 150 Query: 125 IAQRNFYEIYSLD------FKEIVEISAEHDLGTSEL 155 + RN ++ L+ F +IV ISA+ T L Sbjct: 151 VKDRNEVMLHMLELSKRMQFVDIVPISAKQGKNTDVL 187 Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust. Identities = 36/126 (28%), Positives = 56/126 (44%), Gaps = 5/126 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMR-KP 264 +A+VGRPNVGKSTL+N LLG +T + TR + N+ DT G+ + Sbjct: 33 VAIVGRPNVGKSTLLNNLLGQKISITSRKPQTTRHRIMGVETDGNYQAIYVDTPGLHIEE 92 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 R L + S+ V ++ + + D + + + VVL +NK Sbjct: 93 KRAINRLMNRAASSSLSDV----NLVLFVVEGTHWTADDEMVFNKLQKANFPVVLCVNKV 148 Query: 325 DMVSDK 330 D V D+ Sbjct: 149 DQVKDR 154 >gi|238855502|ref|ZP_04645807.1| tRNA modification GTPase TrmE [Lactobacillus jensenii 269-3] gi|260665206|ref|ZP_05866055.1| tRNA modification GTPase TrmE [Lactobacillus jensenii SJ-7A-US] gi|282931528|ref|ZP_06337027.1| tRNA modification GTPase TrmE [Lactobacillus jensenii 208-1] gi|238831868|gb|EEQ24200.1| tRNA modification GTPase TrmE [Lactobacillus jensenii 269-3] gi|260560943|gb|EEX26918.1| tRNA modification GTPase TrmE [Lactobacillus jensenii SJ-7A-US] gi|281304335|gb|EFA96438.1| tRNA modification GTPase TrmE [Lactobacillus jensenii 208-1] Length = 460 Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 57/175 (32%), Positives = 90/175 (51%), Gaps = 4/175 (2%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AIVG PNVGKS+L N L + A+V + G TRD L I GV +VDTAGI ++ Sbjct: 227 AIVGRPNVGKSSLLNYLTQDDKAIVTDVAGTTRDTLEEYVSIKGVPLKLVDTAGIHHTED 286 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 + K ++++ AI +A L+L L+++ +TP D + + + K I+V NK D + Sbjct: 287 -KVEKIGVERSKKAIEQADLVLLLLNASEDLTPEDEKLIDYTKDK--KRIVVLNKSDLGM 343 Query: 126 AQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + N ++ EIV S + +L I K+F N +++ N+R Sbjct: 344 -KLNKEDLAKKTNAEIVVTSILKEENLDDLEEAISKLFFSGIHNSNNDVLVTNQR 397 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 46/164 (28%), Positives = 85/164 (51%), Gaps = 9/164 (5%) Query: 167 YPNHPLEMIENNKRNEES----PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINR 222 YP + + + + E S K N + S K + L A+VGRPNVGKS+L+N Sbjct: 183 YPEYDADQVTAKQMQETSKSVIEKINRLLKTASEGKIMRSGLATAIVGRPNVGKSSLLNY 242 Query: 223 LLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQS 282 L ++ + +G TRD++ + K P+++ DTAG+ + +E+ V++S ++ Sbjct: 243 LTQDDKAIVTDVAGTTRDTLEEYVSIKGVPLKLVDTAGIHHTE---DKVEKIGVERSKKA 299 Query: 283 VRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 + + ++LL+A+ +D +++D + VV LNK D+ Sbjct: 300 IEQADLVLLLLNASEDLTPEDEKLIDYTKDKKRIVV--LNKSDL 341 >gi|184156315|ref|YP_001844655.1| GTPase [Lactobacillus fermentum IFO 3956] gi|227514112|ref|ZP_03944161.1| tRNA modification GTP-binding protein TrmE [Lactobacillus fermentum ATCC 14931] gi|183227659|dbj|BAG28175.1| GTPase [Lactobacillus fermentum IFO 3956] gi|227087483|gb|EEI22795.1| tRNA modification GTP-binding protein TrmE [Lactobacillus fermentum ATCC 14931] gi|299783731|gb|ADJ41729.1| tRNA modification GTP-binding protein TrmE [Lactobacillus fermentum CECT 5716] Length = 462 Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 39/129 (30%), Positives = 75/129 (58%), Gaps = 5/129 (3%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + L A++GRPNVGKS+L+N LL ++ + +G TRD + N P+++ D Sbjct: 218 KVLRDGLATAIIGRPNVGKSSLLNALLHEDKAIVTEVAGTTRDVIEEYVNVAGVPLKLID 277 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R +++E+ V++S Q++ T + ++L+D++ P ++D ++++ V Sbjct: 278 TAGIRHTD---DTVEKIGVERSKQAIETADLILLLIDSSRPLTEEDRALIEATAQKPRMV 334 Query: 318 VLALNKWDM 326 + NK D+ Sbjct: 335 I--FNKTDL 341 Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 54/159 (33%), Positives = 82/159 (51%), Gaps = 5/159 (3%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+ + A+V G TRD + + GV ++DTAGI + Sbjct: 227 AIIGRPNVGKSSLLNALLHEDKAIVTEVAGTTRDVIEEYVNVAGVPLKLIDTAGIRHTDD 286 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 ++ K ++++ AI A LIL LIDS +T D A+ +K P +++ NK D Sbjct: 287 -TVEKIGVERSKQAIETADLILLLIDSSRPLTEEDRALIEATAQK--PRMVIFNKTDLP- 342 Query: 126 AQRNFYEIYSL-DFKEIVEISAEHDLGTSELHSVIFKIF 163 AQ + E+ L + +++ S G EL I F Sbjct: 343 AQVDLAELTELVNGDPVIQTSILEHAGMQELGQAIAHRF 381 >gi|237738571|ref|ZP_04569052.1| thiophene and furan oxidation protein THDF [Fusobacterium sp. 2_1_31] gi|229424054|gb|EEO39101.1| thiophene and furan oxidation protein THDF [Fusobacterium sp. 2_1_31] Length = 455 Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 86/156 (55%), Gaps = 7/156 (4%) Query: 171 PLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLL 230 P +++N K+ K+ I+S K + I ++ A++G+PNVGKS+++N LL +R + Sbjct: 189 PENLVDNLKKASAEIKDLISSYDKGKI--IKDGIKTAIIGKPNVGKSSILNSLLREDRAI 246 Query: 231 TGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTI 290 G TRD + N P+ + DTAG+R I E++ V+KS + + + + + Sbjct: 247 VTHIPGTTRDIIEEVININGIPLLLVDTAGIRNTDDIVENI---GVEKSKELINSADLIL 303 Query: 291 VLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 ++D + +++D RI D + NT V+ LNK D+ Sbjct: 304 YVIDISREIDEEDFRIYD-IINT-DKVIGILNKIDI 337 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 59/183 (32%), Positives = 92/183 (50%), Gaps = 13/183 (7%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS++ N L+++ A+V + PG TRD + ING+ +VDTAGI + + Sbjct: 223 AIIGKPNVGKSSILNSLLREDRAIVTHIPGTTRDIIEEVININGIPLLLVDTAGIRNTDD 282 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 + EL IN A LIL++ID I D I + +I + NK+D + Sbjct: 283 IVENIGVEKSKEL-INSADLILYVIDISREIDEEDFRIYDIINTD--KVIGILNKIDIK- 338 Query: 126 AQRNFYEIYSLDFKEI---VEISAEHDLGTSELHSVIFK-IFKQKYPNHPLEMIENNKRN 181 EI F +I +EISA +G L I+K I + + +++ N R+ Sbjct: 339 -----KEIDLSKFPKIDKWIEISALSKIGIDNLEDEIYKYIMNENVEDSSQKLVITNVRH 393 Query: 182 EES 184 + + Sbjct: 394 KSA 396 >gi|229514086|ref|ZP_04403548.1| GTP-binding protein Era [Vibrio cholerae TMA 21] gi|229349267|gb|EEO14224.1| GTP-binding protein Era [Vibrio cholerae TMA 21] Length = 324 Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 52/177 (29%), Positives = 91/177 (51%), Gaps = 8/177 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N L+ +K+++ P TR R+ G VDT G+ + Sbjct: 33 VAIVGRPNVGKSTLLNNLLGQKISITSRKPQTTRHRIMGVETEGKYQAIYVDTPGLHIEE 92 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN ++++ +L+LF+++ T D + + L+K N P+++ NK+D + Sbjct: 93 KRAINRLMNRAASSSLSDVNLVLFVVEG-THWTADDEMVFNKLQKANFPVVLCVNKVD-Q 150 Query: 125 IAQRNFYEIYSLD------FKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 + RN ++ L+ F +IV ISA+ T L + + + + P E + Sbjct: 151 VKDRNEVMLHMLELSKRMPFVDIVPISAKQGKNTDVLKKHVREHLPKAVHHFPEEYV 207 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 47/170 (27%), Positives = 76/170 (44%), Gaps = 11/170 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV-SISWNWKNHPIEIFDTAGMR-K 263 +A+VGRPNVGKSTL+N LLG +T + TR + + K I + DT G+ + Sbjct: 33 VAIVGRPNVGKSTLLNNLLGQKISITSRKPQTTRHRIMGVETEGKYQAIYV-DTPGLHIE 91 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 R L + S+ V ++ + + D + + + VVL +NK Sbjct: 92 EKRAINRLMNRAASSSLSDV----NLVLFVVEGTHWTADDEMVFNKLQKANFPVVLCVNK 147 Query: 324 WDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 D V D+ ++ + + K +P + I IS + G+ D L V E Sbjct: 148 VDQVKDRNEVMLHM-LELSKRMPFVD---IVPISAKQGKNTDVLKKHVRE 193 >gi|254494883|ref|ZP_01052239.2| tRNA modification GTPase, ThdF family [Polaribacter sp. MED152] gi|213690465|gb|EAQ41667.2| tRNA modification GTPase, ThdF family [Polaribacter sp. MED152] Length = 467 Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 53/153 (34%), Positives = 88/153 (57%), Gaps = 5/153 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKSTL N L+ ++ A+V + G TRD + + II GV F +DTAGI + Sbjct: 230 VAIIGEPNVGKSTLLNALLNEERAIVSDIAGTTRDAIEDELIIEGVAFRFIDTAGIRKTE 289 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKK--NIPIIIVSNKMD 122 + + E A N A LI+FLID+K+ A ++++ N +++V+NK+D Sbjct: 290 DIVENIGIKKAYEKAEN-AQLIIFLIDAKSENKENRLAEIEAIQQRFPNKKLLVVANKID 348 Query: 123 TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 I ++ S + ++ +SA++++G EL Sbjct: 349 L-IPTEELEQLKS-NIDNLMPLSAKNNVGIDEL 379 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 66/125 (52%), Gaps = 7/125 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++G PNVGKSTL+N LL R + +G TRD++ + DTAG+RK Sbjct: 230 VAIIGEPNVGKSTLLNALLNEERAIVSDIAGTTRDAIEDELIIEGVAFRFIDTAGIRKTE 289 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSV---FNTGHAVVLALN 322 I E++ +KK+ + + I L+DA ++ L ++++ F +V+A N Sbjct: 290 DIVENI---GIKKAYEKAENAQLIIFLIDAKSENKENRLAEIEAIQQRFPNKKLLVVA-N 345 Query: 323 KWDMV 327 K D++ Sbjct: 346 KIDLI 350 >gi|194290151|ref|YP_002006058.1| gtp-binding protein era [Cupriavidus taiwanensis LMG 19424] gi|193223986|emb|CAQ69995.1| 30S ribosomal subunit_binding GTPase [Cupriavidus taiwanensis LMG 19424] Length = 311 Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 54/174 (31%), Positives = 86/174 (49%), Gaps = 15/174 (8%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AIVG PNVGKSTL N LV +K+++ TR R+ G + + VDT G Sbjct: 23 TVAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRIVGIQTTDDAQYVFVDTPGFQTR 82 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 ++ + +N ++ LILF+++ AG D L KN P+++V+NK+D Sbjct: 83 HASALNRSLNRAVTSTLSSVDLILFVVE--AGYYGADDEKVLSLLPKNTPVLLVANKLD- 139 Query: 124 RIAQRN------FYEIYS--LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPN 169 RI + F E F+E+V +SA+ T + + +F+I + P Sbjct: 140 RIGENRSEVMMPFLEKMGQLFPFREVVPMSAK----TRDHIARLFEIIRPYLPE 189 Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust. Identities = 37/126 (29%), Positives = 57/126 (45%), Gaps = 8/126 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGM--RK 263 +A+VGRPNVGKSTL+N L+G +T ++ TR + + DT G R Sbjct: 24 VAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRIVGIQTTDDAQYVFVDTPGFQTRH 83 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 S + SL + V ++ SV ++L + D V S+ V+L NK Sbjct: 84 ASALNRSL-NRAVTSTLSSV-----DLILFVVEAGYYGADDEKVLSLLPKNTPVLLVANK 137 Query: 324 WDMVSD 329 D + + Sbjct: 138 LDRIGE 143 >gi|323351499|ref|ZP_08087153.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis VMC66] gi|322121985|gb|EFX93711.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis VMC66] Length = 457 Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 47/137 (34%), Positives = 84/137 (61%), Gaps = 7/137 (5%) Query: 207 AVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSR 266 A++GRPNVGKS+L+N LL ++ + G TRD + N K P+++ DTAG+R+ Sbjct: 227 AIIGRPNVGKSSLLNNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDD 286 Query: 267 ITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 + +EQ V++S ++++ + +++L+A+ P QD ++++ + + +VL LNK D+ Sbjct: 287 L---VEQIGVERSKKALQEADLVLLVLNASEPLTDQDRQLLE-ISQVSNRIVL-LNKTDL 341 Query: 327 VSDKLNLLQDLRTKAIK 343 +K+ L Q L T IK Sbjct: 342 -EEKIELDQ-LPTDVIK 356 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 86/161 (53%), Gaps = 14/161 (8%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+++ A+V + G TRD + I GV ++DTAGI + + Sbjct: 227 AIIGRPNVGKSSLLNNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDD 286 Query: 66 CSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +Q+ ++++ A+ EA L+L ++++ +T D + + N I++ NK D Sbjct: 287 --LVEQIGVERSKKALQEADLVLLVLNASEPLTDQDRQLLEISQVSN--RIVLLNKTD-- 340 Query: 125 IAQRNFYEIYSLDF--KEIVEISAEHDLGTSELHSVIFKIF 163 E LD ++++IS H+ ++ I ++F Sbjct: 341 -----LEEKIELDQLPTDVIKISVLHNQNIDKIEERINQLF 376 >gi|315644290|ref|ZP_07897460.1| tRNA modification GTPase TrmE [Paenibacillus vortex V453] gi|315280665|gb|EFU43954.1| tRNA modification GTPase TrmE [Paenibacillus vortex V453] Length = 458 Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 47/168 (27%), Positives = 90/168 (53%), Gaps = 13/168 (7%) Query: 167 YPNHPLEMIENNKRNEESPKENITSEGKSSVKN------ISKPLRIAVVGRPNVGKSTLI 220 YP H +E + + E+S +++ E +K + + + A++GRPNVGKS+L+ Sbjct: 180 YPEHDVESLTSEFIKEKS--QHVMHEIDKLLKTAQEGKILREGITTAIIGRPNVGKSSLL 237 Query: 221 NRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSM 280 N L NR + G TRD + N P+++ DTAG+R+ + +EQ V++S Sbjct: 238 NTLAQDNRAIVTDIPGTTRDVIEEFVTINNIPLKLLDTAGIRETMDV---VEQIGVERSK 294 Query: 281 QSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVS 328 +V + +++L+A+ P + +L +++ + G ++ +NK D+ S Sbjct: 295 HAVNEADLILLVLNASEPLHQDELELMEQI--RGRQCIVIMNKMDLPS 340 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 41/120 (34%), Positives = 70/120 (58%), Gaps = 5/120 (4%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T AI+G PNVGKS+L N L + A+V + PG TRD + IN + ++DTAGI + Sbjct: 222 TTAIIGRPNVGKSSLLNTLAQDNRAIVTDIPGTTRDVIEEFVTINNIPLKLLDTAGIRE- 280 Query: 64 KNCSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + +Q+ ++++ A+NEA LIL ++++ + + + +R + I++ NKMD Sbjct: 281 -TMDVVEQIGVERSKHAVNEADLILLVLNASEPLHQDELELMEQIRGRQ--CIVIMNKMD 337 >gi|258516219|ref|YP_003192441.1| GTP-binding protein Era [Desulfotomaculum acetoxidans DSM 771] gi|257779924|gb|ACV63818.1| GTP-binding protein Era [Desulfotomaculum acetoxidans DSM 771] Length = 300 Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 46/146 (31%), Positives = 77/146 (52%), Gaps = 5/146 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKSTL NR++ +K+A++ + P TR ++Y + +DT GI K Sbjct: 12 VAIIGRPNVGKSTLMNRMIGRKIAIMSDKPQTTRHKIYCVLTRDNYQVIFLDTPGIHKPK 71 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + + + D + E LILFL+++ + D I L K P+ +V NK+D Sbjct: 72 H-KLGQHLVDTSLSTFGEVDLILFLVEANSFCGAGDRYILEHLAKIKTPVFLVINKVDLV 130 Query: 125 IAQRNFYEIYSLD----FKEIVEISA 146 ++ I L F+E++ +SA Sbjct: 131 PKEQLLPLIDELHSKYKFQEVIPVSA 156 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/137 (29%), Positives = 67/137 (48%), Gaps = 5/137 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKSTL+NR++G + + TR + N+ + DT G+ KP Sbjct: 12 VAIIGRPNVGKSTLMNRMIGRKIAIMSDKPQTTRHKIYCVLTRDNYQVIFLDTPGIHKPK 71 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L Q V S+ + + + L++A D I++ + V L +NK D Sbjct: 72 H---KLGQHLVDTSLSTFGEVDLILFLVEANSFCGAGDRYILEHLAKIKTPVFLVINKVD 128 Query: 326 MVSDK--LNLLQDLRTK 340 +V + L L+ +L +K Sbjct: 129 LVPKEQLLPLIDELHSK 145 >gi|332184229|gb|AEE26483.1| GTP-binding protein Era [Francisella cf. novicida 3523] Length = 297 Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 52/163 (31%), Positives = 83/163 (50%), Gaps = 5/163 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 I+I+G PNVGKSTL N ++K K+++ P TR ++ G + F VDT GI + Sbjct: 7 ISIIGRPNVGKSTLLNNILKYKVSITSRKPQTTRHQITGIKTVGDTQFIYVDTPGIHIKE 66 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I K MN + + +ILF+++ T + I L+ IPI +V NK+D + Sbjct: 67 PKAINKFMNKAATTMVKDVDVILFVVEM-GKWTELEDNIVEKLKHSEIPIFLVVNKVDKK 125 Query: 125 IAQRNFYEIYS----LDFKEIVEISAEHDLGTSELHSVIFKIF 163 + I S L F +++ +SA+ +EL S I K+ Sbjct: 126 KSLEAAIFIESIKEKLSFYDVIYVSAKQGHNINELESRIEKLL 168 Score = 39.7 bits (91), Expect = 0.94, Method: Compositional matrix adjust. Identities = 17/38 (44%), Positives = 26/38 (68%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 I+++GRPNVGKSTL+N +L Y +T + TR ++ Sbjct: 7 ISIIGRPNVGKSTLLNNILKYKVSITSRKPQTTRHQIT 44 >gi|255535209|ref|YP_003095580.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Flavobacteriaceae bacterium 3519-10] gi|255341405|gb|ACU07518.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Flavobacteriaceae bacterium 3519-10] Length = 462 Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 48/171 (28%), Positives = 91/171 (53%), Gaps = 12/171 (7%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 I + +A++G+PN GKSTL+N LL R + +G TRD++ + K + + DTA Sbjct: 214 IKNGVGVAIIGKPNAGKSTLLNALLKEERAIVSDIAGTTRDTIEEMLHIKGNAFRLIDTA 273 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R+ S + +E+ V K+ + V T E + L+D+T +D+ ++ + ++++ Sbjct: 274 GLRETS---DEIEKIGVAKAREKVATAEILVYLIDSTETDISEDVELIRDLARYDLSLIV 330 Query: 320 ALNKWDMVSDKLNLLQDLRTKAIKN-LPQIG--DIYINTISGRTGEGLDDL 367 L K D+ L+++ I+N LP + D ++ +S + LD+L Sbjct: 331 LLTKTDLPKSA------LQSEEIRNSLPVLDFKDFHLIPVSAKQNSNLDEL 375 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 48/157 (30%), Positives = 82/157 (52%), Gaps = 7/157 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PN GKSTL N L+K++ A+V + G TRD + I G F ++DTAG+ + Sbjct: 220 VAIIGKPNAGKSTLLNALLKEERAIVSDIAGTTRDTIEEMLHIKGNAFRLIDTAGLRETS 279 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + I K + + A ++++LIDS D + L + ++ +I++ K D Sbjct: 280 D-EIEKIGVAKAREKVATAEILVYLIDSTETDISEDVELIRDLARYDLSLIVLLTKTDLP 338 Query: 125 IAQRNFYEIYS----LDFKE--IVEISAEHDLGTSEL 155 + EI + LDFK+ ++ +SA+ + EL Sbjct: 339 KSALQSEEIRNSLPVLDFKDFHLIPVSAKQNSNLDEL 375 >gi|167754411|ref|ZP_02426538.1| hypothetical protein ALIPUT_02705 [Alistipes putredinis DSM 17216] gi|167659036|gb|EDS03166.1| hypothetical protein ALIPUT_02705 [Alistipes putredinis DSM 17216] Length = 461 Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 37/101 (36%), Positives = 57/101 (56%), Gaps = 3/101 (2%) Query: 199 NISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDT 258 I K + +A+VG PNVGKSTL+NRLLG R L +G TRD++ + N DT Sbjct: 215 TIKKGVAVAIVGEPNVGKSTLLNRLLGEERALVSDIAGTTRDTIEETLNIDGVLFRFIDT 274 Query: 259 AGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPF 299 AG+ + + LEQ + ++ + +R + + ++DAT P Sbjct: 275 AGLHDTA---DRLEQMGIDRTQEMIRRAQIVLQVVDATCPI 312 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 40/96 (41%), Positives = 59/96 (61%), Gaps = 3/96 (3%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 +AIVG PNVGKSTL NRL+ ++ A+V + G TRD + I+GV+F +DTAG+ D Sbjct: 221 AVAIVGEPNVGKSTLLNRLLGEERALVSDIAGTTRDTIEETLNIDGVLFRFIDTAGLHD- 279 Query: 64 KNCSIAKQMN-DQTELAINEAHLILFLIDSKAGITP 98 +QM D+T+ I A ++L ++D+ I P Sbjct: 280 -TADRLEQMGIDRTQEMIRRAQIVLQVVDATCPIPP 314 >gi|73663753|ref|YP_302534.1| tRNA modification GTPase TrmE [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72496268|dbj|BAE19589.1| putative tRNA modification GTPase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 460 Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 44/116 (37%), Positives = 67/116 (57%), Gaps = 3/116 (2%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PNVGKS++ N L++ A+V PG TRD L + GV +VDTAGI D ++ Sbjct: 227 IVGKPNVGKSSMLNNLIQDNKAIVTEVPGTTRDTLEEYVNVRGVPLRLVDTAGIRDTEDI 286 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + + +++ A+ EA LILF+++ +T D + + KN I++ NKMD Sbjct: 287 -VERIGVERSRKALGEADLILFVLNYNERLTDEDRKLYEVI--KNEDAIVIVNKMD 339 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 44/177 (24%), Positives = 91/177 (51%), Gaps = 14/177 (7%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L +VG+PNVGKS+++N L+ N+ + G TRD++ N + P+ + D Sbjct: 217 KIMREGLSTVIVGKPNVGKSSMLNNLIQDNKAIVTEVPGTTRDTLEEYVNVRGVPLRLVD 276 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R I E + V++S +++ + + +L+ +D ++ + + N V Sbjct: 277 TAGIRDTEDIVERI---GVERSRKALGEADLILFVLNYNERLTDEDRKLYEVIKNEDAIV 333 Query: 318 VLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEI 374 ++ +K++L + L +K++ IGD+ + S EG+D L + + ++ Sbjct: 334 IV---------NKMDLDKHLDLDEVKDM--IGDMPLIQTSMLKQEGIDQLEIQIRDL 379 >gi|260588823|ref|ZP_05854736.1| tRNA modification GTPase TrmE [Blautia hansenii DSM 20583] gi|331083514|ref|ZP_08332626.1| tRNA modification GTPase mnmE [Lachnospiraceae bacterium 6_1_63FAA] gi|260540602|gb|EEX21171.1| tRNA modification GTPase TrmE [Blautia hansenii DSM 20583] gi|330404207|gb|EGG83755.1| tRNA modification GTPase mnmE [Lachnospiraceae bacterium 6_1_63FAA] Length = 457 Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 84/162 (51%), Gaps = 14/162 (8%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PN GKS+L N LV ++ A+V + G TRD L +++G+ ++DTAGI D + Sbjct: 225 IVGKPNAGKSSLLNLLVGEERAIVTDIAGTTRDILEETIVLHGISLRMIDTAGIRDTDDV 284 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 + E A +A LIL+++DS + D I L+ K I++ NKMD + Sbjct: 285 VEKIGVKKAVENA-KDADLILYVVDSSVPLDENDKEIIELLKDKK--AIVILNKMDLQ-- 339 Query: 127 QRNFYEIYSLDFKE-----IVEISAEHDLGTSELHSVIFKIF 163 ++ D KE +V +SA+ + G L + I ++F Sbjct: 340 ----QQVTEEDLKEKTNHPVVAVSAKEEEGIEFLEAKIKEMF 377 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 46/177 (25%), Positives = 93/177 (52%), Gaps = 15/177 (8%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + ++ +VG+PN GKS+L+N L+G R + +G TRD + + + + D Sbjct: 215 KLMKEGIKTVIVGKPNAGKSSLLNLLVGEERAIVTDIAGTTRDILEETIVLHGISLRMID 274 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R + E + VKK++++ + + + ++D+++P ++ D I++ + A+ Sbjct: 275 TAGIRDTDDVVEKI---GVKKAVENAKDADLILYVVDSSVPLDENDKEIIE-LLKDKKAI 330 Query: 318 VLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEI 374 V+ LNK D+ +DL+ K N P + +S + EG++ L + E+ Sbjct: 331 VI-LNKMDLQQQVTE--EDLKEKT--NHPVV------AVSAKEEEGIEFLEAKIKEM 376 >gi|260220752|emb|CBA28631.1| GTP-binding protein era homolog [Curvibacter putative symbiont of Hydra magnipapillata] Length = 393 Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 40/118 (33%), Positives = 65/118 (55%), Gaps = 2/118 (1%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N LV +K+++ TR R+ G F VDT G Sbjct: 101 VAIVGKPNVGKSTLLNALVGQKISITSRKAQTTRHRITGMRTEGQTQFVFVDTPGFQTIH 160 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 ++ K +N + A+++ L+LF++++ T D + L + IP+++V+NK+D Sbjct: 161 GNALNKSLNKAVQGAVSDVDLVLFVVEA-GSFTSADEKVLKLL-GEGIPVVLVANKLD 216 Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust. Identities = 38/139 (27%), Positives = 67/139 (48%), Gaps = 7/139 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VG+PNVGKSTL+N L+G +T ++ TR ++ DT G + Sbjct: 101 VAIVGKPNVGKSTLLNALVGQKISITSRKAQTTRHRITGMRTEGQTQFVFVDTPGFQT-- 158 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 I + K++ K++Q + ++ + F D +++ + G VVL NK D Sbjct: 159 -IHGNALNKSLNKAVQGAVSDVDLVLFVVEAGSFTSADEKVL-KLLGEGIPVVLVANKLD 216 Query: 326 MVSDKLNL---LQDLRTKA 341 V ++ L LQ ++ +A Sbjct: 217 NVKERAGLAPWLQAMQARA 235 >gi|16761492|ref|NP_457109.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29140811|ref|NP_804153.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213161854|ref|ZP_03347564.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213420939|ref|ZP_03354005.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213425277|ref|ZP_03358027.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213613050|ref|ZP_03370876.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213646354|ref|ZP_03376407.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|289825502|ref|ZP_06544709.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|21263585|sp|Q8Z4K5|ERA_SALTI RecName: Full=GTPase Era gi|25294154|pir||AB0829 GTP-binding protein [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503792|emb|CAD02782.1| GTP-binding protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29136436|gb|AAO68002.1| GTP-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 301 Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 54/185 (29%), Positives = 91/185 (49%), Gaps = 20/185 (10%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYG-------QAIINGVIFNIVDT 57 IAIVG PNVGKSTL N+L+ +K+++ TR R+ G QAI VDT Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGPYQAI-------YVDT 63 Query: 58 AGIADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIV 117 G+ + +I + MN +I + L++F+++ TP D + + LR P+I+ Sbjct: 64 PGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLRDGKAPVILA 122 Query: 118 SNKMDTRIAQRNF-----YEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPL 172 NK+D + + + ++F +IV ISAE + + S++ K + + P Sbjct: 123 VNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGMNVDTIASIVRKHLPEAIHHFPE 182 Query: 173 EMIEN 177 + I + Sbjct: 183 DYITD 187 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 51/161 (31%), Positives = 82/161 (50%), Gaps = 9/161 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS-VSISWNWKNHPIEIFDTAGMRKP 264 IA+VGRPNVGKSTL+N+LLG +T ++ TR V I I + DT G+ Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGPYQAIYV-DTPGLHME 69 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 + ++ + K + S+ E I +++ T + D +++ + + V+LA+NK Sbjct: 70 EK--RAINRLMNKAASSSIGDVELVIFVVEGT-RWTPDDEMVLNKLRDGKAPVILAVNKV 126 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLD 365 D V +K +LL L+ A Q+ + I IS TG +D Sbjct: 127 DNVQEKADLLPHLQFLA----SQMNFLDIVPISAETGMNVD 163 >gi|300774015|ref|ZP_07083884.1| tRNA modification GTPase TrmE [Sphingobacterium spiritivorum ATCC 33861] gi|300760186|gb|EFK57013.1| tRNA modification GTPase TrmE [Sphingobacterium spiritivorum ATCC 33861] Length = 458 Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 53/158 (33%), Positives = 79/158 (50%), Gaps = 7/158 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + I G PNVGKSTL N L+ ++ A+V + G TRD + + I+GV F +DTAGI + Sbjct: 226 VVIAGKPNVGKSTLLNALLNEERAIVSDIAGTTRDTIEDEINIHGVTFRFIDTAGIRETV 285 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + AK + ++T + +A LI++L D +R NIP + + NK D Sbjct: 286 DVIEAKGV-ERTREKMKQARLIIYLFDPVQDTIADVETQLEEVRSLNIPFVTIINKSDLL 344 Query: 125 I-AQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 QR Y S F ISA+ +G EL + + Sbjct: 345 TEEQRAEYRTLSPVF-----ISAKEQIGVEELKDELLR 377 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 36/131 (27%), Positives = 67/131 (51%), Gaps = 15/131 (11%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 + + G+PNVGKSTL+N LL R + +G TRD++ N DTAG+R+ Sbjct: 226 VVIAGKPNVGKSTLLNALLNEERAIVSDIAGTTRDTIEDEINIHGVTFRFIDTAGIRET- 284 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLD------ATIPFEKQDLRIVDSVFNTGHAVVL 319 + +E K V+++ + ++ I L D A + + +++R ++ F V Sbjct: 285 --VDVIEAKGVERTREKMKQARLIIYLFDPVQDTIADVETQLEEVRSLNIPF------VT 336 Query: 320 ALNKWDMVSDK 330 +NK D+++++ Sbjct: 337 IINKSDLLTEE 347 >gi|82582309|sp|Q49UI4|MNME_STAS1 RecName: Full=tRNA modification GTPase mnmE Length = 459 Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 44/116 (37%), Positives = 67/116 (57%), Gaps = 3/116 (2%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PNVGKS++ N L++ A+V PG TRD L + GV +VDTAGI D ++ Sbjct: 226 IVGKPNVGKSSMLNNLIQDNKAIVTEVPGTTRDTLEEYVNVRGVPLRLVDTAGIRDTEDI 285 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + + +++ A+ EA LILF+++ +T D + + KN I++ NKMD Sbjct: 286 -VERIGVERSRKALGEADLILFVLNYNERLTDEDRKLYEVI--KNEDAIVIVNKMD 338 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 44/177 (24%), Positives = 91/177 (51%), Gaps = 14/177 (7%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L +VG+PNVGKS+++N L+ N+ + G TRD++ N + P+ + D Sbjct: 216 KIMREGLSTVIVGKPNVGKSSMLNNLIQDNKAIVTEVPGTTRDTLEEYVNVRGVPLRLVD 275 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R I E + V++S +++ + + +L+ +D ++ + + N V Sbjct: 276 TAGIRDTEDIVERI---GVERSRKALGEADLILFVLNYNERLTDEDRKLYEVIKNEDAIV 332 Query: 318 VLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEI 374 ++ +K++L + L +K++ IGD+ + S EG+D L + + ++ Sbjct: 333 IV---------NKMDLDKHLDLDEVKDM--IGDMPLIQTSMLKQEGIDQLEIQIRDL 378 >gi|301511106|ref|ZP_07236343.1| GTP-binding protein Era [Acinetobacter baumannii AB058] Length = 297 Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 52/174 (29%), Positives = 84/174 (48%), Gaps = 6/174 (3%) Query: 9 GAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNCSI 68 G PNVGKSTL N L+ +K+++ P TR ++ G + VDT G+ + +I Sbjct: 1 GRPNVGKSTLMNHLLGQKLSITSRKPQTTRHKIIGIDSREKMQAVYVDTPGMHKKEVRAI 60 Query: 69 AKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIAQR 128 K MN A+ + +L+LF+ID+ T D + L+ ++P+I+V NK DT +R Sbjct: 61 NKMMNRAAHSALRDVNLVLFVIDAHKW-TQNDDLVLEKLKNADMPVILVINKADTFGDKR 119 Query: 129 NFYEIYS-----LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 + ++F EIV +SA L I K + P + + I + Sbjct: 120 EILPLIQERAKLMNFAEIVPVSALRGANLEHLSETIEKYLPYQPPLYSFDQITD 173 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/133 (29%), Positives = 66/133 (49%), Gaps = 5/133 (3%) Query: 210 GRPNVGKSTLINRLLGYNRLLTGSQSGITRDS-VSISWNWKNHPIEIFDTAGMRKPSRIT 268 GRPNVGKSTL+N LLG +T + TR + I K + + DT GM K Sbjct: 1 GRPNVGKSTLMNHLLGQKLSITSRKPQTTRHKIIGIDSREKMQAVYV-DTPGMHKKE--V 57 Query: 269 ESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVS 328 ++ + + + ++R + ++DA + DL +++ + N V+L +NK D Sbjct: 58 RAINKMMNRAAHSALRDVNLVLFVIDAHKWTQNDDL-VLEKLKNADMPVILVINKADTFG 116 Query: 329 DKLNLLQDLRTKA 341 DK +L ++ +A Sbjct: 117 DKREILPLIQERA 129 >gi|256846684|ref|ZP_05552140.1| tRNA modification GTPase TrmE [Fusobacterium sp. 3_1_36A2] gi|256717904|gb|EEU31461.1| tRNA modification GTPase TrmE [Fusobacterium sp. 3_1_36A2] Length = 455 Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 47/159 (29%), Positives = 87/159 (54%), Gaps = 7/159 (4%) Query: 171 PLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLL 230 P +++N K+ ++ ++S K + I ++ A++G+PNVGKS+++N LL +R + Sbjct: 189 PENLVDNLKKASAEIRDLVSSYDKGKI--IKDGIKTAIIGKPNVGKSSILNSLLREDRAI 246 Query: 231 TGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTI 290 G TRD + N P+ + DTAG+R I E++ V+KS + + + + + Sbjct: 247 VTHIPGTTRDIIEEVININGIPLLLIDTAGIRNTDDIVENI---GVEKSKELINSADLIL 303 Query: 291 VLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSD 329 ++D + +++D RI D + NT V+ LNK D+ D Sbjct: 304 YVIDTSREIDEEDFRIYD-IINT-DKVIGILNKIDIKKD 340 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 57/182 (31%), Positives = 95/182 (52%), Gaps = 11/182 (6%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS++ N L+++ A+V + PG TRD + ING+ ++DTAGI + + Sbjct: 223 AIIGKPNVGKSSILNSLLREDRAIVTHIPGTTRDIIEEVININGIPLLLIDTAGIRNTDD 282 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR- 124 + EL IN A LIL++ID+ I D I + +I + NK+D + Sbjct: 283 IVENIGVEKSKEL-INSADLILYVIDTSREIDEEDFRIYDIINTD--KVIGILNKIDIKK 339 Query: 125 -IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK-IFKQKYPNHPLEMIENNKRNE 182 I F +I ++ +EISA +G L + I+K I + + +++ N R++ Sbjct: 340 DIDLSRFPKI-----EKWIEISALSKMGIDNLENEIYKYIMNENVEDSSQKLVITNVRHK 394 Query: 183 ES 184 + Sbjct: 395 SA 396 >gi|116198089|ref|XP_001224856.1| hypothetical protein CHGG_07200 [Chaetomium globosum CBS 148.51] gi|88178479|gb|EAQ85947.1| hypothetical protein CHGG_07200 [Chaetomium globosum CBS 148.51] Length = 496 Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 65/243 (26%), Positives = 118/243 (48%), Gaps = 32/243 (13%) Query: 150 LGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEESPKENITSE--GKSSVKNISKPLRIA 207 LG E+ ++I Q + P E++ N R E +I G + + +RIA Sbjct: 160 LGRGEIEALIDFSEDQHFDESPAELLTNVTRLTEDILHSIGLHKLGSQRSELLRNGIRIA 219 Query: 208 VVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRI 267 ++G PN GKS+L+N+++G + +++G TRD V S + + + DTAG+R ++ Sbjct: 220 LLGPPNAGKSSLMNQIVGREASIVSAEAGTTRDIVEASLDIRGYLCSFADTAGIR--TKT 277 Query: 268 TESL--------------EQKTVKKSMQSVRTCETTIVL--LDAT------IPFEKQDLR 305 +ESL EQ+ ++++ Q + IVL ++AT I ++ + L+ Sbjct: 278 SESLGHHDGTAASTIGAIEQEGIRRARQKALDSDVIIVLASVEATESGNHRISYDLETLQ 337 Query: 306 IVDSVFNTGHAVVLALNKWDMVS-DKLNLL-QDLRTKAIKNLPQIGDIYINTISGRTGEG 363 + ++A+NK D+VS + L LL QD ++ + ++ + TIS + G Sbjct: 338 LAAGA----QQCLVAVNKTDIVSPESLELLIQDFKSSVLADIDGLSGQEPLTISCKAAAG 393 Query: 364 LDD 366 L D Sbjct: 394 LTD 396 Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 35/56 (62%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 IA++G PN GKS+L N++V ++ ++V G TRD + I G + + DTAGI Sbjct: 218 IALLGPPNAGKSSLMNQIVGREASIVSAEAGTTRDIVEASLDIRGYLCSFADTAGI 273 >gi|115605759|gb|ABJ15861.1| YphC [Helicobacter pylori] Length = 170 Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 51/156 (32%), Positives = 82/156 (52%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + S + IS H+ G S L Sbjct: 123 KIDNDKEKERACAFSSFGMPKSFNISVSHNRGISAL 158 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 84/172 (48%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D ++S L++N+ Sbjct: 125 D--NDK----EKERACAFSSFGMPKSFNISVSHNRGISALIDAVLSALDLNQ 170 >gi|291618445|ref|YP_003521187.1| Era [Pantoea ananatis LMG 20103] gi|291153475|gb|ADD78059.1| Era [Pantoea ananatis LMG 20103] gi|327394841|dbj|BAK12263.1| GTP-binding protein Era [Pantoea ananatis AJ13355] Length = 301 Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 49/149 (32%), Positives = 79/149 (53%), Gaps = 8/149 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N+L+ +K+++ P TR R+ G VDT G+ + Sbjct: 11 VAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGIHTEGAYQAIYVDTPGLHMEE 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN +I + LI+F++D TP D + + LR +P+++ NK+D Sbjct: 71 KRAINRLMNRAASSSIGDVELIIFVVDGTR-WTPDDEMVLNKLRDGKVPVLLAINKVDN- 128 Query: 125 IAQRNF------YEIYSLDFKEIVEISAE 147 I ++ + ++F +IV ISAE Sbjct: 129 IQDKSILLPHLQFLSQQMNFIDIVPISAE 157 Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 48/168 (28%), Positives = 83/168 (49%), Gaps = 7/168 (4%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 +N++ +A+VGRPNVGKSTL+N+LLG +T + TR + + D Sbjct: 3 ENVTYSGFVAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGIHTEGAYQAIYVD 62 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 T G+ + ++ + + + S+ E I ++D T + D +++ + + V Sbjct: 63 TPGLHMEEK--RAINRLMNRAASSSIGDVELIIFVVDGT-RWTPDDEMVLNKLRDGKVPV 119 Query: 318 VLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLD 365 +LA+NK D + DK LL L+ + Q+ I I IS TG+ +D Sbjct: 120 LLAINKVDNIQDKSILLPHLQFLS----QQMNFIDIVPISAETGKNVD 163 >gi|160901780|ref|YP_001567361.1| GTP-binding protein Era [Petrotoga mobilis SJ95] gi|160359424|gb|ABX31038.1| GTP-binding protein Era [Petrotoga mobilis SJ95] Length = 306 Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 50/169 (29%), Positives = 91/169 (53%), Gaps = 6/169 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+ G+PNVGKSTLIN LLG ++ ++ TR+ V+ ++ I DT G+ KP Sbjct: 11 VALAGKPNVGKSTLINALLGQKVVIVSDKTQTTRNRVNCILTEDHYQIVFVDTPGIHKPI 70 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 R + + V ++ +++ + + ++DA DLR+ + V + +L +NK D Sbjct: 71 R---KIGEYMVNIAINALKGVDLILFIIDAKDGLRNSDLRVTEIVDKSKIPTILLVNKVD 127 Query: 326 MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEI 374 +V DK + +L T+ I++L + IS TG+ L +L S++++ Sbjct: 128 LVKDKEKI--NLMTEKIQSLCS-NIVKTIEISALTGKNLSELKQSIIDL 173 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 58/180 (32%), Positives = 87/180 (48%), Gaps = 13/180 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+ G PNVGKSTL N L+ +K+ +V + TR+R+ + VDT GI Sbjct: 11 VALAGKPNVGKSTLINALLGQKVVIVSDKTQTTRNRVNCILTEDHYQIVFVDTPGI---- 66 Query: 65 NCSIAKQMNDQTELAINE---AHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 + I K +AIN LILF+ID+K G+ D +T + K IP I++ NK+ Sbjct: 67 HKPIRKIGEYMVNIAINALKGVDLILFIIDAKDGLRNSDLRVTEIVDKSKIPTILLVNKV 126 Query: 122 DTRIAQRNF----YEIYSL--DFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 D + +I SL + + +EISA SEL I + + +P +MI Sbjct: 127 DLVKDKEKINLMTEKIQSLCSNIVKTIEISALTGKNLSELKQSIIDLLPEGPQYYPEDMI 186 >gi|332360804|gb|EGJ38610.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis SK49] Length = 457 Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 47/137 (34%), Positives = 84/137 (61%), Gaps = 7/137 (5%) Query: 207 AVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSR 266 A++GRPNVGKS+L+N LL ++ + G TRD + N K P+++ DTAG+R+ Sbjct: 227 AIIGRPNVGKSSLLNNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDD 286 Query: 267 ITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 + +EQ V++S ++++ + +++L+A+ P QD ++++ + + +VL LNK D+ Sbjct: 287 L---VEQIGVERSKKALQEADLVLLVLNASEPLTDQDRQLLE-ISQDSNRIVL-LNKTDL 341 Query: 327 VSDKLNLLQDLRTKAIK 343 +K+ L Q L AIK Sbjct: 342 -EEKIELDQ-LPADAIK 356 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 69/118 (58%), Gaps = 5/118 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+++ A+V + G TRD + I GV ++DTAGI + + Sbjct: 227 AIIGRPNVGKSSLLNNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDD 286 Query: 66 CSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + +Q+ ++++ A+ EA L+L ++++ +T D + + N I++ NK D Sbjct: 287 --LVEQIGVERSKKALQEADLVLLVLNASEPLTDQDRQLLEISQDSN--RIVLLNKTD 340 >gi|296106525|ref|YP_003618225.1| GTP-binding protein Era [Legionella pneumophila 2300/99 Alcoy] gi|295648426|gb|ADG24273.1| GTP-binding protein Era [Legionella pneumophila 2300/99 Alcoy] Length = 295 Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 51/165 (30%), Positives = 80/165 (48%), Gaps = 20/165 (12%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTL NR++++K+++ P TR + G + F VDT GI G Sbjct: 8 IALVGRPNVGKSTLLNRILQQKLSITSRKPQTTRHSILGIRTEDEFQFVYVDTPGIHQGN 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD-- 122 +I + MN + + +I FL+D D + + ++ +P I+V NK+D Sbjct: 68 AKAINRMMNKTAISVLRDVDVIAFLVDG-THWKDEDEYVLNLIKHAKVPCILVVNKVDKI 126 Query: 123 ----------TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHS 157 +I+QR Y+ F I+ +SA+ L EL Sbjct: 127 TDKTQLLPWIEQISQR--YQ-----FAAIIPLSAKTGLQVDELEG 164 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 37/129 (28%), Positives = 67/129 (51%), Gaps = 3/129 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA+VGRPNVGKSTL+NR+L +T + TR S+ DT G+ + + Sbjct: 8 IALVGRPNVGKSTLLNRILQQKLSITSRKPQTTRHSILGIRTEDEFQFVYVDTPGIHQGN 67 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +++ + K ++ +R + L+D T ++ +D +++ + + +L +NK D Sbjct: 68 --AKAINRMMNKTAISVLRDVDVIAFLVDGT-HWKDEDEYVLNLIKHAKVPCILVVNKVD 124 Query: 326 MVSDKLNLL 334 ++DK LL Sbjct: 125 KITDKTQLL 133 >gi|312136220|ref|YP_004003558.1| tRNA modification gtpase trme [Caldicellulosiruptor owensensis OL] gi|311776271|gb|ADQ05758.1| tRNA modification GTPase TrmE [Caldicellulosiruptor owensensis OL] Length = 455 Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 53/150 (35%), Positives = 88/150 (58%), Gaps = 10/150 (6%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 IYT+ IVG PNVGKS+L NRL+K++ A+V + PG TRD + I G+ + DTAG+ Sbjct: 221 IYTV-IVGRPNVGKSSLLNRLLKEEKAIVTDIPGTTRDVIEEVLDIEGIPIILADTAGVR 279 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 ++ + K ++T +I A L+LF+++S +GI D I ++ K +++ NK+ Sbjct: 280 RTEDV-VEKIGVERTLKSIERADLVLFMVES-SGILQEDLEIFETIKDKRFVVLV--NKI 335 Query: 122 D--TRIAQRNFYEIYSLDFKEIVEISAEHD 149 D +++Q + ++ KE + IS E D Sbjct: 336 DREVKVSQDDIKRVFG---KEGIFISVELD 362 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 37/128 (28%), Positives = 72/128 (56%), Gaps = 6/128 (4%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K I + +VGRPNVGKS+L+NRLL + + G TRD + + + PI + D Sbjct: 215 KAIKSGIYTVIVGRPNVGKSSLLNRLLKEEKAIVTDIPGTTRDVIEEVLDIEGIPIILAD 274 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ + E + V+++++S+ + + +++++ ++DL I +++ + V Sbjct: 275 TAGVRRTEDVVEKI---GVERTLKSIERADLVLFMVESS-GILQEDLEIFETIKDKRFVV 330 Query: 318 VLALNKWD 325 + +NK D Sbjct: 331 L--VNKID 336 >gi|253581093|ref|ZP_04858353.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251847629|gb|EES75599.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 474 Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 44/160 (27%), Positives = 87/160 (54%), Gaps = 10/160 (6%) Query: 167 YPNHPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGY 226 YP LE+++N ++ E +S+GK I + ++ ++G+PN GKS+L+N L+G Sbjct: 206 YPQELLEVVDNEQK-EVKRLLKTSSDGKM----IQEGIQTVILGKPNAGKSSLLNLLIGE 260 Query: 227 NRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTC 286 NR + +G TRD + ++I DTAG+R+ I E + V ++ + + Sbjct: 261 NRAIVTDIAGTTRDILEEYITLHGISLKIIDTAGIRETKDIVEKI---GVDRAREMAQKA 317 Query: 287 ETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 + + ++D+++P ++ D I++ + TG ++ NK D+ Sbjct: 318 DLILYVVDSSVPLDENDEEIMEML--TGKKAIILYNKTDL 355 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 54/162 (33%), Positives = 81/162 (50%), Gaps = 14/162 (8%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 I+G PN GKS+L N L+ + A+V + G TRD L ++G+ I+DTAGI + K+ Sbjct: 242 ILGKPNAGKSSLLNLLIGENRAIVTDIAGTTRDILEEYITLHGISLKIIDTAGIRETKDI 301 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 + K D+ +A LIL+++DS + D I L K II+ NK D + Sbjct: 302 -VEKIGVDRAREMAQKADLILYVVDSSVPLDENDEEIMEMLTGKK--AIILYNKTDLQ-- 356 Query: 127 QRNFYEIYSLDFKE-----IVEISAEHDLGTSELHSVIFKIF 163 EI KE ++ ISA+ + G +EL I +F Sbjct: 357 ----PEIQPEILKEKTGHPVIPISAKEEKGITELEEQIKDMF 394 >gi|37522021|ref|NP_925398.1| tRNA modification GTPase TrmE [Gloeobacter violaceus PCC 7421] gi|46577365|sp|Q7NHT3|MNME_GLOVI RecName: Full=tRNA modification GTPase mnmE gi|35213020|dbj|BAC90393.1| glr2452 [Gloeobacter violaceus PCC 7421] Length = 453 Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 43/118 (36%), Positives = 69/118 (58%), Gaps = 3/118 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKS+L N + A+V + PG TRD + + G+ ++DTAGI + Sbjct: 221 VAIVGRPNVGKSSLLNAWSRTDRAIVTDLPGTTRDVVESMLNVQGIPVQVLDTAGIREAT 280 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + ++ + +++ A EA L+L +ID G T D I + +R++ P+I+V NK D Sbjct: 281 D-TVERIGIERSHAAAREADLVLLVIDRTEGWTCADSDIFAQVRER--PVIVVVNKSD 335 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 39/123 (31%), Positives = 70/123 (56%), Gaps = 5/123 (4%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 L++A+VGRPNVGKS+L+N +R + G TRD V N + P+++ DTAG+R+ Sbjct: 219 LKVAIVGRPNVGKSSLLNAWSRTDRAIVTDLPGTTRDVVESMLNVQGIPVQVLDTAGIRE 278 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 T+++E+ +++S + R + ++++D T + D I V V++ +NK Sbjct: 279 A---TDTVERIGIERSHAAAREADLVLLVIDRTEGWTCADSDIFAQVRE--RPVIVVVNK 333 Query: 324 WDM 326 D+ Sbjct: 334 SDL 336 >gi|308187805|ref|YP_003931936.1| GTP-binding protein [Pantoea vagans C9-1] gi|308058315|gb|ADO10487.1| GTP-binding protein [Pantoea vagans C9-1] Length = 301 Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 51/176 (28%), Positives = 88/176 (50%), Gaps = 6/176 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N+L+ +K+++ P TR R+ G VDT G+ + Sbjct: 11 VAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGIHTEGNYQAIYVDTPGLHMEE 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD-- 122 +I + MN +I + L++F+++ TP D + + LR+ +P+++ NK+D Sbjct: 71 KRAINRLMNRAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLRENKVPVVLAVNKVDNI 129 Query: 123 ---TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 T + + ++F +IV ISAE + ++ K Q + P + I Sbjct: 130 QDKTILLPHLQFLSQQMNFLDIVPISAESGKNVDTIAAITRKHLPQADHHFPEDYI 185 Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 46/160 (28%), Positives = 79/160 (49%), Gaps = 7/160 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VGRPNVGKSTL+N+LLG +T + TR + N+ DT G+ Sbjct: 11 VAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGIHTEGNYQAIYVDTPGLHMEE 70 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + ++ + + + S+ E I +++ T + D +++ + VVLA+NK D Sbjct: 71 K--RAINRLMNRAASSSIGDVELVIFVVEGT-RWTPDDEMVLNKLRENKVPVVLAVNKVD 127 Query: 326 MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLD 365 + DK LL L+ + Q+ + I IS +G+ +D Sbjct: 128 NIQDKTILLPHLQFLS----QQMNFLDIVPISAESGKNVD 163 >gi|261886445|ref|ZP_06010484.1| GTP-binding protein EngA [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 181 Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 52/170 (30%), Positives = 89/170 (52%), Gaps = 9/170 (5%) Query: 290 IVLLDATIPFEKQDLRI--VDSVFNTGHAVVLALNKWDMVSDKLN-LLQDLRTKAIKNLP 346 +++LDA+ P + D RI + + F G +++ LNKWD + + ++ +LR K K L Sbjct: 1 MLVLDASEPLTELDERIAGLGAKFELG--LIIVLNKWDKDHGEFDKVVYELRDK-FKFLA 57 Query: 347 QIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNR 406 I ++ + G+ L L +LE+ K + ++ TS LN L++ +P P + Sbjct: 58 YAPIISVSALGGKRVHKLYPL---ILEVYKNYTQKMKTSRLNEVLEEAIRTHPIPRDHGK 114 Query: 407 YNRLKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPI 456 ++ Y Q +PP + P + SYKRYL+N+LR N+ LSG P+ Sbjct: 115 IVKIYYGVQFGFAPPKIALIMNKPRSLHFSYKRYLLNKLRENYELSGTPV 164 >gi|18075571|emb|CAD11181.1| GTP-binding protein [Helicobacter pylori] gi|122702803|emb|CAL88591.1| GTPase [Helicobacter pylori] Length = 170 Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 51/156 (32%), Positives = 82/156 (52%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + S + IS H+ G S L Sbjct: 123 KIDNDKEKERACAFSSFGMPKSFNISVSHNRGISAL 158 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|28379977|ref|NP_786869.1| tRNA modification GTPase TrmE [Lactobacillus plantarum WCFS1] gi|300769099|ref|ZP_07078988.1| tRNA modification GTPase TrmE [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308182180|ref|YP_003926308.1| tRNA modification GTPase TrmE [Lactobacillus plantarum subsp. plantarum ST-III] gi|32171799|sp|Q88RX5|MNME_LACPL RecName: Full=tRNA modification GTPase mnmE gi|28272818|emb|CAD65747.1| thiophene and furan oxidation protein ThdF [Lactobacillus plantarum WCFS1] gi|300493339|gb|EFK28518.1| tRNA modification GTPase TrmE [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308047671|gb|ADO00215.1| tRNA modification GTPase TrmE [Lactobacillus plantarum subsp. plantarum ST-III] Length = 463 Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 52/199 (26%), Positives = 99/199 (49%), Gaps = 7/199 (3%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+ + A+V + G TRD + + GV +VDTAGI D ++ Sbjct: 228 AIIGRPNVGKSSLLNHLLHEDKAIVTDVAGTTRDVIEEYVNVRGVPLKLVDTAGIRDTED 287 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 + K +++ AI A L+L ++D+ +T D + + +I+ + R+ Sbjct: 288 -KVEKIGVERSRKAIGAADLVLLVLDNSQPLTAEDRELLQETDQSKRIVILNKTDLPARL 346 Query: 126 AQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEESP 185 Q ++ +D +++ +S G ++L I K+F N +E +NN + Sbjct: 347 DQAELAQL--VDLSDVLSMSVLEQSGVTQLEQRIAKMF----FNEGIESSQNNVMVTNAR 400 Query: 186 KENITSEGKSSVKNISKPL 204 + ++ K +++++ L Sbjct: 401 HIGLLNQAKQALQDVQTGL 419 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 38/129 (29%), Positives = 73/129 (56%), Gaps = 5/129 (3%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L A++GRPNVGKS+L+N LL ++ + +G TRD + N + P+++ D Sbjct: 219 KVLREGLATAIIGRPNVGKSSLLNHLLHEDKAIVTDVAGTTRDVIEEYVNVRGVPLKLVD 278 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R + +E+ V++S +++ + +++LD + P +D ++ + V Sbjct: 279 TAGIRDTE---DKVEKIGVERSRKAIGAADLVLLVLDNSQPLTAEDRELLQETDQSKRIV 335 Query: 318 VLALNKWDM 326 + LNK D+ Sbjct: 336 I--LNKTDL 342 >gi|290769994|gb|ADD61761.1| putative protein [uncultured organism] Length = 322 Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 54/168 (32%), Positives = 84/168 (50%), Gaps = 21/168 (12%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLY-------GQAIINGVIFNIVDT 57 + +G PNVGKSTL N+++ +K+A+ N P TR+R+ GQ ++F VDT Sbjct: 28 VTFIGRPNVGKSTLMNQIIGQKIAITSNKPQTTRNRIQTVYTDERGQ-----IVF--VDT 80 Query: 58 AGIADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIV 117 GI KN + + M E I+E LI +L++ + + I L++ PI++V Sbjct: 81 PGIHKAKN-KLGEYMVGAAEKTISEVDLICWLVEPTTHLGAAEEHIVEKLKECKTPIVLV 139 Query: 118 SNKMDTRIAQRNFYEIY-----SLDFKEIVEISAEHDLGTSELHSVIF 160 NK DT I + + LDF +IV + A + +L VIF Sbjct: 140 INKTDT-IKKEEILPVIDCYRKELDFVDIVPVCARNGNNVDDLLDVIF 186 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 39/165 (23%), Positives = 76/165 (46%), Gaps = 12/165 (7%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 + +GRPNVGKSTL+N+++G +T ++ TR+ + + + I DT G+ K Sbjct: 28 VTFIGRPNVGKSTLMNQIIGQKIAITSNKPQTTRNRIQTVYTDERGQIVFVDTPGIHKAK 87 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + V + +++ + L++ T + IV+ + +VL +NK D Sbjct: 88 N---KLGEYMVGAAEKTISEVDLICWLVEPTTHLGAAEEHIVEKLKECKTPIVLVINKTD 144 Query: 326 MVSDK--LNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLM 368 + + L ++ R ++ + I + R G +DDL+ Sbjct: 145 TIKKEEILPVIDCYR-------KELDFVDIVPVCARNGNNVDDLL 182 >gi|253997708|ref|YP_003049772.1| tRNA modification GTPase TrmE [Methylotenera mobilis JLW8] gi|253984387|gb|ACT49245.1| tRNA modification GTPase TrmE [Methylotenera mobilis JLW8] Length = 449 Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 45/118 (38%), Positives = 71/118 (60%), Gaps = 2/118 (1%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + +VG PNVGKS+L N+L +++A+V G TRD + INGV +++DTAG+ + Sbjct: 221 VVLVGQPNVGKSSLMNQLAGEEVAIVTAIAGTTRDTIKNAIQINGVPLHVIDTAGLRETD 280 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + + K +T A AH+ L L+D+ GIT + +I + L +K IP + V NK+D Sbjct: 281 D-EVEKFGIARTWRATETAHIALLLVDATHGITEVEKSILARLPQK-IPKVWVHNKID 336 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 28/97 (28%), Positives = 58/97 (59%), Gaps = 3/97 (3%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + + + +VG+PNVGKS+L+N+L G + + +G TRD++ + P+ + DTA Sbjct: 215 LREGINVVLVGQPNVGKSSLMNQLAGEEVAIVTAIAGTTRDTIKNAIQINGVPLHVIDTA 274 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDAT 296 G+R+ + +E+ + ++ ++ T ++L+DAT Sbjct: 275 GLRETD---DEVEKFGIARTWRATETAHIALLLVDAT 308 >gi|208779800|ref|ZP_03247144.1| GTP-binding protein Era [Francisella novicida FTG] gi|254373099|ref|ZP_04988588.1| hypothetical protein FTCG_00677 [Francisella tularensis subsp. novicida GA99-3549] gi|151570826|gb|EDN36480.1| hypothetical protein FTCG_00677 [Francisella novicida GA99-3549] gi|208744255|gb|EDZ90555.1| GTP-binding protein Era [Francisella novicida FTG] Length = 297 Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 53/163 (32%), Positives = 82/163 (50%), Gaps = 5/163 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 I+I+G PNVGKSTL N ++K K+++ P TR ++ G + F VDT GI + Sbjct: 7 ISIIGRPNVGKSTLLNNILKYKVSITSRKPQTTRHQITGIKTLGDTQFIYVDTPGIHIKE 66 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I K MN E +ILF+++ T + I L+ IPI +V NK+D + Sbjct: 67 PKAINKFMNKAATTMFKEVDVILFVVEM-GKWTELEDNIVEKLKHSEIPIFLVVNKVDKK 125 Query: 125 IAQRNFYEIYS----LDFKEIVEISAEHDLGTSELHSVIFKIF 163 + I S L F +++ +SA+ +EL S I K+ Sbjct: 126 KSLEAAMFIESIKEKLSFYDVIYVSAKQGHNINELESRIEKLL 168 Score = 39.7 bits (91), Expect = 0.99, Method: Compositional matrix adjust. Identities = 17/38 (44%), Positives = 26/38 (68%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 I+++GRPNVGKSTL+N +L Y +T + TR ++ Sbjct: 7 ISIIGRPNVGKSTLLNNILKYKVSITSRKPQTTRHQIT 44 >gi|77919006|ref|YP_356821.1| GTP-binding protein Era [Pelobacter carbinolicus DSM 2380] gi|77545089|gb|ABA88651.1| GTP-binding protein Era [Pelobacter carbinolicus DSM 2380] Length = 303 Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 54/165 (32%), Positives = 87/165 (52%), Gaps = 13/165 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIIN----GVIFNIVDTAGI 60 +AI+G PNVGKSTL N ++ +K+A+ N P TR+R+ G I N V+F +DT G+ Sbjct: 16 VAIIGRPNVGKSTLLNSVLGQKIAITSNKPQTTRNRILG--IYNQPDAQVLF--LDTPGV 71 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 K + + M DQ + ++L L+++ + D + + + N+P+I+V NK Sbjct: 72 HKAKGM-LNRYMVDQALSTCGDVDVVLMLVEANDRLGGGDDYVLEQVSRSNVPVILVINK 130 Query: 121 MDT--RIAQRNFYEIYS--LDFKEIVEISAEHDLGTSELHSVIFK 161 +D R E Y+ F EI+ +SA GT +L S + K Sbjct: 131 VDLIHRPELLPLIEAYTGKYAFSEIIPVSALTGEGTEQLVSSLVK 175 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 47/178 (26%), Positives = 90/178 (50%), Gaps = 15/178 (8%) Query: 201 SKPLR---IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 KP R +A++GRPNVGKSTL+N +LG +T ++ TR+ + +N + + D Sbjct: 8 EKPFRSGFVAIIGRPNVGKSTLLNSVLGQKIAITSNKPQTTRNRILGIYNQPDAQVLFLD 67 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 T G+ K + L + V +++ + + ++L++A D +++ V + V Sbjct: 68 TPGVHKAKGM---LNRYMVDQALSTCGDVDVVLMLVEANDRLGGGDDYVLEQVSRSNVPV 124 Query: 318 VLALNKWDMVS--DKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 +L +NK D++ + L L++ K + I +S TGEG + L+ S+++ Sbjct: 125 ILVINKVDLIHRPELLPLIEAYTGKYAFS-------EIIPVSALTGEGTEQLVSSLVK 175 >gi|197294660|ref|YP_001799201.1| GTP-binding protein Era [Candidatus Phytoplasma australiense] gi|171853987|emb|CAM11950.1| Glycyl-tRNA synthetase [Candidatus Phytoplasma australiense] Length = 292 Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 54/181 (29%), Positives = 92/181 (50%), Gaps = 8/181 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N L +K+A+ + P TR ++ G + + VDT GI K Sbjct: 8 IAIVGRPNVGKSTLLNVLTNQKIAITSDKPQTTRHKIVGICHESDAQYIFVDTPGINQYK 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + ++MN + +I++ +ILF+ DS P + + F+ KK P+ +V NK+D Sbjct: 68 YL-LNQKMNQISFRSISDVDVILFVTDS--FYHPQEKNLLDFIFKKKKPLFLVINKIDIL 124 Query: 125 IAQRNFYEIY-----SLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNK 179 ++ I F ++ +SA +L S +++ ++ P +P +I + K Sbjct: 125 KSKNKIDAIILSYLNHYPFINVIPLSAVESKNIPKLKSFLYQNMQKGVPYYPQNIITDQK 184 Query: 180 R 180 + Sbjct: 185 K 185 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 5/125 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA+VGRPNVGKSTL+N L +T + TR + + + DT G+ + Sbjct: 8 IAIVGRPNVGKSTLLNVLTNQKIAITSDKPQTTRHKIVGICHESDAQYIFVDTPGINQYK 67 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + L QK + S +S+ + + + D+ + Q+ ++D +F + L +NK D Sbjct: 68 YL---LNQKMNQISFRSISDVDVILFVTDSF--YHPQEKNLLDFIFKKKKPLFLVINKID 122 Query: 326 MVSDK 330 ++ K Sbjct: 123 ILKSK 127 >gi|223985698|ref|ZP_03635745.1| hypothetical protein HOLDEFILI_03051 [Holdemania filiformis DSM 12042] gi|223962309|gb|EEF66774.1| hypothetical protein HOLDEFILI_03051 [Holdemania filiformis DSM 12042] Length = 298 Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 49/150 (32%), Positives = 82/150 (54%), Gaps = 11/150 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRD--RLYGQAIINGVIFNIVDTAGIAD 62 +A++G PN GKSTL N LV++K+A++ P TR+ R + +IF VDT GI Sbjct: 6 VALIGRPNAGKSTLLNALVQQKVAIISPKPQTTRNSIRAIRTDADSQIIF--VDTPGIHK 63 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 K+ + QMN + A + LI +L+D D + + LR+ ++P+ ++ NK+D Sbjct: 64 PKH-ELGTQMNKEAYSAASGVDLIYYLVDGSVPFGSGDEFVLNTLRQMHLPVYLILNKID 122 Query: 123 TRIAQRNFYEIY-----SLDFKEIVEISAE 147 + + ++ +DFKEI+ ISA+ Sbjct: 123 L-LEKEQLIDLLLAWQQRMDFKEIIPISAK 151 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 34/123 (27%), Positives = 60/123 (48%), Gaps = 3/123 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPN GKSTL+N L+ + + TR+S+ + I DT G+ KP Sbjct: 6 VALIGRPNAGKSTLLNALVQQKVAIISPKPQTTRNSIRAIRTDADSQIIFVDTPGIHKPK 65 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + K++ + + L+D ++PF D +++++ V L LNK D Sbjct: 66 H---ELGTQMNKEAYSAASGVDLIYYLVDGSVPFGSGDEFVLNTLRQMHLPVYLILNKID 122 Query: 326 MVS 328 ++ Sbjct: 123 LLE 125 >gi|159045994|ref|YP_001534788.1| tRNA modification GTPase TrmE [Dinoroseobacter shibae DFL 12] gi|205829136|sp|A8LPC2|MNME_DINSH RecName: Full=tRNA modification GTPase mnmE gi|157913754|gb|ABV95187.1| tRNA modification GTPase TrmE [Dinoroseobacter shibae DFL 12] Length = 429 Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 37/115 (32%), Positives = 65/115 (56%), Gaps = 6/115 (5%) Query: 187 ENITSE--GKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSI 244 +N+ +E G + + I +A++G PNVGKS+L+NRL G +T S +G TRD V + Sbjct: 195 QNLAAESAGTHAAERIRHGFEVAILGAPNVGKSSLLNRLAGREAAITSSIAGTTRDVVEV 254 Query: 245 SWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLL-DATIP 298 + P+ + DTAG+R+ + +EQ + ++M + + I+L+ D +P Sbjct: 255 RLDLDGLPVTVLDTAGLRETQ---DEIEQIGISRAMARAESADLRIILIEDGRLP 306 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 40/58 (68%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 + +AI+GAPNVGKS+L NRL ++ A+ + G TRD + + ++G+ ++DTAG+ Sbjct: 214 FEVAILGAPNVGKSSLLNRLAGREAAITSSIAGTTRDVVEVRLDLDGLPVTVLDTAGL 271 >gi|304403961|ref|ZP_07385623.1| GTP-binding protein Era [Paenibacillus curdlanolyticus YK9] gi|304346939|gb|EFM12771.1| GTP-binding protein Era [Paenibacillus curdlanolyticus YK9] Length = 306 Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 51/148 (34%), Positives = 77/148 (52%), Gaps = 8/148 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N ++ +K+A++ + P TR++++G + +DT GI Sbjct: 17 VAIVGRPNVGKSTLMNHIIGQKIAIMSDKPQTTRNKIHGVYTKDDKQIVFLDTPGIHK-P 75 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRK-KNIPIIIVSNKMDT 123 + M A++E LFLID GI D I L+ KN P+ +V NK+D Sbjct: 76 QSKLGNFMVKSAVNALDEVEAALFLIDVSEGIGGGDRFIIEQLKNVKNTPVFLVMNKID- 134 Query: 124 RIAQRNFYEIYS-----LDFKEIVEISA 146 ++ +I + DF EI+ ISA Sbjct: 135 KVKPEELLKIITQYKDLYDFAEIIPISA 162 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 61/123 (49%), Gaps = 4/123 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VGRPNVGKSTL+N ++G + + TR+ + + + I DT G+ KP Sbjct: 17 VAIVGRPNVGKSTLMNHIIGQKIAIMSDKPQTTRNKIHGVYTKDDKQIVFLDTPGIHKPQ 76 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHA-VVLALNKW 324 L VK ++ ++ E + L+D + D I++ + N + V L +NK Sbjct: 77 ---SKLGNFMVKSAVNALDEVEAALFLIDVSEGIGGGDRFIIEQLKNVKNTPVFLVMNKI 133 Query: 325 DMV 327 D V Sbjct: 134 DKV 136 >gi|253580801|ref|ZP_04858064.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251847871|gb|EES75838.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 302 Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 55/192 (28%), Positives = 90/192 (46%), Gaps = 11/192 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKSTL N L+ +K+A+ P TR+R+ + +DT GI K Sbjct: 10 VAIIGRPNVGKSTLMNHLIGQKIAITSKKPQTTRNRIQTVYTCDEGQIVFLDTPGIHKAK 69 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N + + M E + E I++L++ I + I L+ +P+I++ NK+DT Sbjct: 70 N-KLGEYMVQVAERTLKEVDAIMWLVEPSTFIGAGERHIAEQLQGIGVPVILIINKIDTV 128 Query: 125 IAQRNFYEIYS----LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + I + DF EI+ SA T ++ I K P P+ E+ Sbjct: 129 SKEEILPAIDTYRKVCDFAEIIPCSALRGQNTQDIIGCILKYL----PYGPMFYDEDTVT 184 Query: 181 NEESPKENITSE 192 ++ P+ I +E Sbjct: 185 DQ--PQRQIVAE 194 Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 34/123 (27%), Positives = 62/123 (50%), Gaps = 3/123 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKSTL+N L+G +T + TR+ + + I DT G+ K Sbjct: 10 VAIIGRPNVGKSTLMNHLIGQKIAITSKKPQTTRNRIQTVYTCDEGQIVFLDTPGIHKAK 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + V+ + ++++ + + L++ + + I + + G V+L +NK D Sbjct: 70 N---KLGEYMVQVAERTLKEVDAIMWLVEPSTFIGAGERHIAEQLQGIGVPVILIINKID 126 Query: 326 MVS 328 VS Sbjct: 127 TVS 129 >gi|238917282|ref|YP_002930799.1| GTP-binding protein Era [Eubacterium eligens ATCC 27750] gi|238872642|gb|ACR72352.1| GTP-binding protein Era [Eubacterium eligens ATCC 27750] Length = 322 Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 54/168 (32%), Positives = 84/168 (50%), Gaps = 21/168 (12%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLY-------GQAIINGVIFNIVDT 57 + +G PNVGKSTL N+++ +K+A+ N P TR+R+ GQ ++F VDT Sbjct: 28 VTFIGRPNVGKSTLMNQIIGQKIAITSNKPQTTRNRIQTVYTDERGQ-----IVF--VDT 80 Query: 58 AGIADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIV 117 GI KN + + M E I+E LI +L++ + + I L++ PI++V Sbjct: 81 PGIHKAKN-KLGEYMVGAAEKTISEVDLICWLVEPTTHLGAAEEHIVEKLKECKTPIVLV 139 Query: 118 SNKMDTRIAQRNFYEIY-----SLDFKEIVEISAEHDLGTSELHSVIF 160 NK DT I + + LDF +IV + A + +L VIF Sbjct: 140 INKTDT-IKKEEILPVIDCYRKELDFVDIVPVCARNGNNVDDLLDVIF 186 Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 39/165 (23%), Positives = 76/165 (46%), Gaps = 12/165 (7%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 + +GRPNVGKSTL+N+++G +T ++ TR+ + + + I DT G+ K Sbjct: 28 VTFIGRPNVGKSTLMNQIIGQKIAITSNKPQTTRNRIQTVYTDERGQIVFVDTPGIHKAK 87 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + V + +++ + L++ T + IV+ + +VL +NK D Sbjct: 88 N---KLGEYMVGAAEKTISEVDLICWLVEPTTHLGAAEEHIVEKLKECKTPIVLVINKTD 144 Query: 326 MVSDK--LNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLM 368 + + L ++ R ++ + I + R G +DDL+ Sbjct: 145 TIKKEEILPVIDCYR-------KELDFVDIVPVCARNGNNVDDLL 182 >gi|34497522|ref|NP_901737.1| GTP-binding protein Era [Chromobacterium violaceum ATCC 12472] gi|81711814|sp|Q7NWC3|ERA_CHRVO RecName: Full=GTPase Era gi|34103377|gb|AAQ59739.1| GTP-binding protein [Chromobacterium violaceum ATCC 12472] Length = 296 Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 52/182 (28%), Positives = 91/182 (50%), Gaps = 8/182 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N L+ +K+++ TR R+ G + F VDT G Sbjct: 11 VAIVGRPNVGKSTLMNHLIGQKISITSKKSQTTRHRVTGIHTEDAAQFVFVDTPGFQTYH 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD-- 122 ++ + +N + ++ +LFL+++ T D + + L KK P+I+V NK+D Sbjct: 71 KGALNEALNKSVKDSLGSVDCVLFLLEAMR-FTAADREVMALLPKKT-PVILVVNKLDKA 128 Query: 123 -TRIAQRNFYE--IYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI-ENN 178 ++ + F + +F + +SA+H +EL + + P +P +MI + N Sbjct: 129 KDKLTLQAFIDEVTAEFEFAGVEVVSAKHGQRLAELLDQVRPHLPESMPLYPEDMITDKN 188 Query: 179 KR 180 +R Sbjct: 189 ER 190 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 54/168 (32%), Positives = 82/168 (48%), Gaps = 12/168 (7%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VGRPNVGKSTL+N L+G +T +S TR V+ DT G + Sbjct: 11 VAIVGRPNVGKSTLMNHLIGQKISITSKKSQTTRHRVTGIHTEDAAQFVFVDTPGFQTYH 70 Query: 266 R--ITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 + + E+L K+VK S+ SV + + LL+A + F D R V ++ V+L +NK Sbjct: 71 KGALNEAL-NKSVKDSLGSV---DCVLFLLEA-MRFTAAD-REVMALLPKKTPVILVVNK 124 Query: 324 WDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSV 371 D DKL LQ + G + +S + G+ L +L+ V Sbjct: 125 LDKAKDKLT-LQAFIDEVTAEFEFAG---VEVVSAKHGQRLAELLDQV 168 >gi|172059049|ref|YP_001815509.1| tRNA modification GTPase TrmE [Exiguobacterium sibiricum 255-15] gi|205829139|sp|B1YGA8|MNME_EXIS2 RecName: Full=tRNA modification GTPase mnmE gi|171991570|gb|ACB62492.1| tRNA modification GTPase TrmE [Exiguobacterium sibiricum 255-15] Length = 460 Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 51/176 (28%), Positives = 91/176 (51%), Gaps = 6/176 (3%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N LV++ A+V + G TRD + + GV ++DTAGI + ++ Sbjct: 226 AIIGRPNVGKSSLLNTLVQEAKAIVTDIAGTTRDTIEEYVNVRGVPLKLIDTAGIRETED 285 Query: 66 CSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I ++M +++ A+N A LIL +++ +T D + +R N II+ + + Sbjct: 286 --IVERMGVEKSRQALNSADLILLVLNGNDALTEEDVLLFEAIRGMNAIIIVNKSDLTQA 343 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKI-FKQKYPNHPLEMIENNK 179 I E+ D + +V S + G ++L + I + F+Q + + N + Sbjct: 344 IDLTRVSELA--DGRPVVTTSLLEEAGVTDLEAAIASLFFEQGVEGQDMTYVSNAR 397 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 37/129 (28%), Positives = 76/129 (58%), Gaps = 5/129 (3%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L A++GRPNVGKS+L+N L+ + + +G TRD++ N + P+++ D Sbjct: 217 KILREGLSTAIIGRPNVGKSSLLNTLVQEAKAIVTDIAGTTRDTIEEYVNVRGVPLKLID 276 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ I E + V+KS Q++ + + +++L+ ++D+ + +++ G Sbjct: 277 TAGIRETEDIVERM---GVEKSRQALNSADLILLVLNGNDALTEEDVLLFEAI--RGMNA 331 Query: 318 VLALNKWDM 326 ++ +NK D+ Sbjct: 332 IIIVNKSDL 340 >gi|260892064|ref|YP_003238161.1| GTP-binding protein Era [Ammonifex degensii KC4] gi|260864205|gb|ACX51311.1| GTP-binding protein Era [Ammonifex degensii KC4] Length = 300 Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 49/147 (33%), Positives = 78/147 (53%), Gaps = 7/147 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +++VG PNVGKSTL N LV +K+A+V + P TR R+ G + VDT GI + Sbjct: 11 VSVVGRPNVGKSTLINHLVGQKVAIVSDKPQTTRHRILGVLTLPEAQIVFVDTPGIHKPR 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + + + A+ L+LFL ++ + D+ I L+K +P+I+V NK+D Sbjct: 71 H-RLGEYLVTLALGALKGVDLVLFLSEATSPPGAGDYFILEQLKKAEVPVILVLNKIDL- 128 Query: 125 IAQRNFYEIYSL-----DFKEIVEISA 146 I++ + L DF IV +SA Sbjct: 129 ISKPRLLPLIDLWRQEHDFAAIVPVSA 155 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 53/170 (31%), Positives = 83/170 (48%), Gaps = 12/170 (7%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP- 264 ++VVGRPNVGKSTLIN L+G + + TR + I DT G+ KP Sbjct: 11 VSVVGRPNVGKSTLINHLVGQKVAIVSDKPQTTRHRILGVLTLPEAQIVFVDTPGIHKPR 70 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 R+ E L V ++ +++ + + L +AT P D I++ + V+L LNK Sbjct: 71 HRLGEYL----VTLALGALKGVDLVLFLSEATSPPGAGDYFILEQLKKAEVPVILVLNKI 126 Query: 325 DMVSD-KLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 D++S +L L DL + + I +S TGE L+ L+ ++E Sbjct: 127 DLISKPRLLPLIDLWRQ------EHDFAAIVPVSALTGENLERLVQEIVE 170 >gi|262277402|ref|ZP_06055195.1| GTP-binding protein EngA [alpha proteobacterium HIMB114] gi|262224505|gb|EEY74964.1| GTP-binding protein EngA [alpha proteobacterium HIMB114] Length = 269 Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 64/277 (23%), Positives = 131/277 (47%), Gaps = 18/277 (6%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 +S + ++G+PNVGKST+ N++LG N SG T + + N I + D Sbjct: 1 MSDVFNVCIIGKPNVGKSTIFNKILGKNISDVSEISGTTVHPIISPKEFNNLNINLIDLG 60 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G++K S+ ++ ++ +++ + +LD + K D ++ + N +V++ Sbjct: 61 GLKKKSKSHDNKQKLITSYTIKQLNMSNVVFFVLDGSDVITKNDKQLFRLILNKLKSVIV 120 Query: 320 ALNKWDMVSDKLNLLQD-LRTKAIKNLPQI--GDIYINTISGRTGEGLDDLMVSVLEINK 376 +NK D++ + L ++ + KN P I I+I+ + E L + + +K Sbjct: 121 IINKTDLIQENLKKKENYFKFFFDKNYPNILLKPIFISALKNVKREFLLKKIYEIYYNSK 180 Query: 377 -LWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNR--LKYITQIQSSPPSFLIFCTFPNK- 432 L K + T L + L K Q +F++ +R +K++ + ++P +IF F NK Sbjct: 181 YLIKNKDTNDVLKNILDKHQ------PVFSKNSRPVIKFLKHVNTNP---IIFKAFGNKL 231 Query: 433 --IPESYKRYLINRLRINFSLSGIPIRMCFQSSKNPY 467 + + YK + I ++ + + + + ++KNPY Sbjct: 232 TSLSKDYKNFFIKQVLLQLKIYNQVAVIKYLNNKNPY 268 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 33/123 (26%), Positives = 61/123 (49%), Gaps = 2/123 (1%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 ++ + I+G PNVGKST+FN+++ K ++ V G T + N + N++D G+ Sbjct: 4 VFNVCIIGKPNVGKSTIFNKILGKNISDVSEISGTTVHPIISPKEFNNLNINLIDLGGLK 63 Query: 62 DGKNCSIAKQ--MNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 KQ + T +N ++++ F++D IT D + + K +I++ N Sbjct: 64 KKSKSHDNKQKLITSYTIKQLNMSNVVFFVLDGSDVITKNDKQLFRLILNKLKSVIVIIN 123 Query: 120 KMD 122 K D Sbjct: 124 KTD 126 >gi|116496320|ref|YP_808054.1| tRNA modification GTPase TrmE [Lactobacillus casei ATCC 334] gi|191639864|ref|YP_001989030.1| tRNA modification GTPase TrmE [Lactobacillus casei BL23] gi|227533513|ref|ZP_03963562.1| tRNA modification GTPase TrmE [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239630797|ref|ZP_04673828.1| tRNA modification GTPase TrmE [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301067924|ref|YP_003789947.1| tRNA modification GTPase, TrmE [Lactobacillus casei str. Zhang] gi|122262283|sp|Q033L0|MNME_LACC3 RecName: Full=tRNA modification GTPase mnmE gi|116106470|gb|ABJ71612.1| tRNA modification GTPase trmE [Lactobacillus casei ATCC 334] gi|190714166|emb|CAQ68172.1| tRNA modification GTPase trmE [Lactobacillus casei BL23] gi|227188842|gb|EEI68909.1| tRNA modification GTPase TrmE [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239527080|gb|EEQ66081.1| tRNA modification GTPase TrmE [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300440331|gb|ADK20097.1| tRNA modification GTPase, TrmE [Lactobacillus casei str. Zhang] gi|327383978|gb|AEA55454.1| TRNA modification GTPase TrmE:Small GTP-binding protein [Lactobacillus casei LC2W] gi|327387162|gb|AEA58636.1| TRNA modification GTPase TrmE:Small GTP-binding protein domain:GTP-binding [Lactobacillus casei BD-II] Length = 462 Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 76/132 (57%), Gaps = 5/132 (3%) Query: 195 SSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIE 254 S K + + L A+VGRPNVGKS+L+N +L ++ + +G TRD + N + P++ Sbjct: 216 SQGKVLREGLATAIVGRPNVGKSSLLNHMLHEDKAIVTDVAGTTRDVLEEYVNVRGVPLK 275 Query: 255 IFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTG 314 + DTAG+ T+ +E+ V++S Q++ + +++LD + P +D +++ + N Sbjct: 276 LVDTAGIHDT---TDKVEKIGVERSRQAITQADLILLVLDQSEPLTDEDEQLIQATANKK 332 Query: 315 HAVVLALNKWDM 326 +V LNK D+ Sbjct: 333 RIIV--LNKQDL 342 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 59/179 (32%), Positives = 88/179 (49%), Gaps = 9/179 (5%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AIVG PNVGKS+L N ++ + A+V + G TRD L + GV +VDTAGI D + Sbjct: 228 AIVGRPNVGKSSLLNHMLHEDKAIVTDVAGTTRDVLEEYVNVRGVPLKLVDTAGIHDTTD 287 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHA-ITSFLRKKNIPIIIVSNKMD-- 122 + K +++ AI +A LIL ++D +T D I + KK IIV NK D Sbjct: 288 -KVEKIGVERSRQAITQADLILLVLDQSEPLTDEDEQLIQATANKKR---IIVLNKQDLP 343 Query: 123 TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 ++ ++ S D EI++ + G L I K+F N ++ +N R Sbjct: 344 AQLDTTALLKLVSPD--EIIKTAIPTSAGMDALDERIAKLFFGGIENSQTTVMVSNARQ 400 >gi|262282851|ref|ZP_06060618.1| tRNA modification GTPase mnmE [Streptococcus sp. 2_1_36FAA] gi|262261103|gb|EEY79802.1| tRNA modification GTPase mnmE [Streptococcus sp. 2_1_36FAA] Length = 457 Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 47/137 (34%), Positives = 84/137 (61%), Gaps = 7/137 (5%) Query: 207 AVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSR 266 A++GRPNVGKS+L+N LL ++ + G TRD + N K P+++ DTAG+R+ Sbjct: 227 AIIGRPNVGKSSLLNNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDD 286 Query: 267 ITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 + +EQ V++S ++++ + +++L+A+ P QD ++++ + + +VL LNK D+ Sbjct: 287 L---VEQIGVERSKKALQEADLVLLVLNASEPLTDQDKQLLE-ISQDSNRIVL-LNKTDL 341 Query: 327 VSDKLNLLQDLRTKAIK 343 +K+ L Q L AIK Sbjct: 342 -EEKIELDQ-LPADAIK 356 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 69/118 (58%), Gaps = 5/118 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+++ A+V + G TRD + I GV ++DTAGI + + Sbjct: 227 AIIGRPNVGKSSLLNNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDD 286 Query: 66 CSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + +Q+ ++++ A+ EA L+L ++++ +T D + + N I++ NK D Sbjct: 287 --LVEQIGVERSKKALQEADLVLLVLNASEPLTDQDKQLLEISQDSN--RIVLLNKTD 340 >gi|94970562|ref|YP_592610.1| GTP-binding protein Era [Candidatus Koribacter versatilis Ellin345] gi|94552612|gb|ABF42536.1| GTP-binding protein Era [Candidatus Koribacter versatilis Ellin345] Length = 324 Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 52/154 (33%), Positives = 83/154 (53%), Gaps = 10/154 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAII--NGVIFNIVDTAGIAD 62 ++I+G PN GKSTL N LV +K+A+V + P TR+R+ G + G I +VDT G+ Sbjct: 8 VSIIGRPNAGKSTLLNALVGEKIAIVTHKPQTTRNRIQGIVTVPKKGQIV-LVDTPGVHK 66 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + ++ K+M + A+ L+L++ D D S ++K P++++ NK+D Sbjct: 67 -PDKTLNKRMMQEVYDALEGCDLLLYIHDVTHKFEKEDEYTLSLVKKTGQPVMLLLNKID 125 Query: 123 TRIAQRNFYEIYSL-----DFKEIVEISAEHDLG 151 IA+ EI + DFKEI+ ISA G Sbjct: 126 L-IAKPKLLEIITQFSTLHDFKEIIPISAAKGSG 158 Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 54/170 (31%), Positives = 87/170 (51%), Gaps = 11/170 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV-SISWNWKNHPIEIFDTAGMRKP 264 ++++GRPN GKSTL+N L+G + + TR+ + I K I + DT G+ KP Sbjct: 8 VSIIGRPNAGKSTLLNALVGEKIAIVTHKPQTTRNRIQGIVTVPKKGQIVLVDTPGVHKP 67 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 + +L ++ +++ ++ C+ + + D T FEK+D + V TG V+L LNK Sbjct: 68 DK---TLNKRMMQEVYDALEGCDLLLYIHDVTHKFEKEDEYTLSLVKKTGQPVMLLLNKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDI-YINTISGRTGEGLDDLMVSVLE 373 D+++ K LL+ I + D I IS G GLD L VL+ Sbjct: 125 DLIA-KPKLLE-----IITQFSTLHDFKEIIPISAAKGSGLDILRKKVLQ 168 >gi|288818281|ref|YP_003432629.1| GTP-binding protein [Hydrogenobacter thermophilus TK-6] gi|288787681|dbj|BAI69428.1| GTP-binding protein [Hydrogenobacter thermophilus TK-6] gi|308751878|gb|ADO45361.1| GTP-binding protein Era [Hydrogenobacter thermophilus TK-6] Length = 302 Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 59/188 (31%), Positives = 97/188 (51%), Gaps = 21/188 (11%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYG-QAIINGVIFNIVDTAGIADG 63 +AIVG PNVGKSTL N+++ K+++V PG TR R+ G + I + +DT GI Sbjct: 6 VAIVGKPNVGKSTLLNQIIGTKVSIVSPKPGTTRIRILGVKNIPDEAQIVFLDTPGIYRP 65 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITS-----FLRKKNIPIIIVS 118 K+ ++ + M ++ +A +ILF+ID++ G D + S ++K+I ++I Sbjct: 66 KD-ALGEAMVQVASASLQDADIILFMIDAEDGWLEDDELVFSNYIKPLAQEKHIFLVI-- 122 Query: 119 NKMDTRIAQRNFYEIYSL---------DFKEIVEISAEHDLGTSELHSVIFKIFKQKYPN 169 NK+D R+ + ++ L +FKE++ ISA EL I K P Sbjct: 123 NKVD-RVG--HVSQVLPLAEEIIKKHGEFKEVLPISALKGYNIDELLKTILKYLPDGKPL 179 Query: 170 HPLEMIEN 177 P EM+ + Sbjct: 180 FPPEMLTD 187 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 46/176 (26%), Positives = 87/176 (49%), Gaps = 18/176 (10%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIE----IFDTAGM 261 +A+VG+PNVGKSTL+N+++G + + G TR + KN P E DT G+ Sbjct: 6 VAIVGKPNVGKSTLLNQIIGTKVSIVSPKPGTTRIRI---LGVKNIPDEAQIVFLDTPGI 62 Query: 262 RKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRI----VDSVFNTGHAV 317 +P ++L + V+ + S++ + + ++DA + + D + + + H + Sbjct: 63 YRPK---DALGEAMVQVASASLQDADIILFMIDAEDGWLEDDELVFSNYIKPLAQEKH-I 118 Query: 318 VLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 L +NK D V +L L + IK + ++ IS G +D+L+ ++L+ Sbjct: 119 FLVINKVDRVGHVSQVLP-LAEEIIKKHGEFKEVL--PISALKGYNIDELLKTILK 171 >gi|218282280|ref|ZP_03488579.1| hypothetical protein EUBIFOR_01161 [Eubacterium biforme DSM 3989] gi|218216748|gb|EEC90286.1| hypothetical protein EUBIFOR_01161 [Eubacterium biforme DSM 3989] Length = 319 Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 52/174 (29%), Positives = 83/174 (47%), Gaps = 5/174 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PN GKSTL N L+K+K+A++ + P TR+ + G + VDT GI + Sbjct: 26 IAIVGRPNAGKSTLLNALLKEKIAIMSDKPNTTRNNISGILTHEDCQYVFVDTPGIHKPQ 85 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD-- 122 + + +N A+ + +I +++D D I + + P++++ NK+D Sbjct: 86 Q-QLGRVLNKNAYSAMEDCDVIGWIVDGTQSFGTGDSFILKRIETLHKPVVLIMNKIDKL 144 Query: 123 --TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEM 174 ++ +R Y DF +IV ISA EL V + P P EM Sbjct: 145 PKEQLLKRLVYWQKQHDFNDIVPISALDKDNLDELLHVFKGYLPEGEPMFPEEM 198 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 58/120 (48%), Gaps = 3/120 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA+VGRPN GKSTL+N LL + + TR+++S ++ DT G+ KP Sbjct: 26 IAIVGRPNAGKSTLLNALLKEKIAIMSDKPNTTRNNISGILTHEDCQYVFVDTPGIHKPQ 85 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + L + K + ++ C+ ++D T F D I+ + VVL +NK D Sbjct: 86 ---QQLGRVLNKNAYSAMEDCDVIGWIVDGTQSFGTGDSFILKRIETLHKPVVLIMNKID 142 >gi|297842581|ref|XP_002889172.1| hypothetical protein ARALYDRAFT_895691 [Arabidopsis lyrata subsp. lyrata] gi|297335013|gb|EFH65431.1| hypothetical protein ARALYDRAFT_895691 [Arabidopsis lyrata subsp. lyrata] Length = 560 Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 52/180 (28%), Positives = 95/180 (52%), Gaps = 15/180 (8%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + L+IA+VGRPNVGKS+L+N R + +G TRD V + + PI + D Sbjct: 312 KLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEVAGTTRDVVEANVTVRGVPITVLD 371 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ + I E + V++S + + + I+ + A + ++D ++ + + + Sbjct: 372 TAGIRETNDIVEKI---GVERSETAAKVADVIIMAVSAVEGWTEEDTELLRKI-QSDKPM 427 Query: 318 VLALNKWDMV-SDKLNLLQDLRTKAIKNLPQIGDIYINTI--SGRTGEGLDDLMVSVLEI 374 +L +NK D + L+D R K +++ ++ S TG+GL++L ++LEI Sbjct: 428 ILVMNKIDSAPPSSCDQLEDQRKKE--------EVFHKSVFTSAVTGQGLEELEDAILEI 479 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 61/190 (32%), Positives = 90/190 (47%), Gaps = 19/190 (10%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKS+L N K + A+V G TRD + + GV ++DTAGI + Sbjct: 320 IAIVGRPNVGKSSLLNAWSKSERAIVTEVAGTTRDVVEANVTVRGVPITVLDTAGIRE-T 378 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRK--KNIPIIIVSNKMD 122 N + K +++E A A +I+ + + G T D T LRK + P+I+V NK+D Sbjct: 379 NDIVEKIGVERSETAAKVADVIIMAVSAVEGWTEED---TELLRKIQSDKPMILVMNKID 435 Query: 123 TRIA--------QRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFK-QKYPNHPLE 173 + QR E+ F + V SA G EL I +I + P + Sbjct: 436 SAPPSSCDQLEDQRKKEEV----FHKSVFTSAVTGQGLEELEDAILEILGLDRVPTGGHQ 491 Query: 174 MIENNKRNEE 183 N ++ E+ Sbjct: 492 WTVNQRQCEQ 501 >gi|297584643|ref|YP_003700423.1| GTP-binding protein Era [Bacillus selenitireducens MLS10] gi|297143100|gb|ADH99857.1| GTP-binding protein Era [Bacillus selenitireducens MLS10] Length = 302 Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 50/170 (29%), Positives = 87/170 (51%), Gaps = 12/170 (7%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 A+VG PNVGKSTL N+++ +K+A++ + P TR+R+ G +DT GI K+ Sbjct: 12 ALVGRPNVGKSTLLNQVLGQKIAIMSDKPQTTRNRIQGVLTDERGQIVFIDTPGIHKPKH 71 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 + M + A+ E ++LFL+D+K G D I L P+ +V NK+D Sbjct: 72 -RLGDFMTKLAQQALREVDVVLFLVDAKEGKGAGDEYIIRKLENLETPVFLVINKIDEVH 130 Query: 126 AQR------NFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPN 169 + + ++Y F E++ +SA L + + +++ ++FK P Sbjct: 131 PEELLSIIAGYKDLYP--FAEVIPVSA---LNGNNVETLLEQVFKYLEPG 175 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 58/121 (47%), Gaps = 3/121 (2%) Query: 207 AVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSR 266 A+VGRPNVGKSTL+N++LG + + TR+ + + I DT G+ KP Sbjct: 12 ALVGRPNVGKSTLLNQVLGQKIAIMSDKPQTTRNRIQGVLTDERGQIVFIDTPGIHKPKH 71 Query: 267 ITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 L K + Q++R + + L+DA D I+ + N V L +NK D Sbjct: 72 ---RLGDFMTKLAQQALREVDVVLFLVDAKEGKGAGDEYIIRKLENLETPVFLVINKIDE 128 Query: 327 V 327 V Sbjct: 129 V 129 >gi|227539827|ref|ZP_03969876.1| tRNA modification GTPase TrmE [Sphingobacterium spiritivorum ATCC 33300] gi|227240469|gb|EEI90484.1| tRNA modification GTPase TrmE [Sphingobacterium spiritivorum ATCC 33300] Length = 458 Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 53/158 (33%), Positives = 80/158 (50%), Gaps = 7/158 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + I G PNVGKSTL N L+ ++ A+V + G TRD + + I+GV F +DTAGI + Sbjct: 226 VVIAGKPNVGKSTLLNALLNEERAIVSDIAGTTRDTIEDEINIHGVTFRFIDTAGIRETV 285 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD-T 123 + AK + ++T + +A LI++L D +R NIP + + NK D Sbjct: 286 DVIEAKGV-ERTREKMKQARLIIYLFDPVQDTIADVETQLEEVRSLNIPFVTIINKSDLL 344 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 QR Y+ S F ISA+ +G EL + + Sbjct: 345 SEEQRAGYQSLSPVF-----ISAKEQIGVEELKDELLR 377 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/131 (28%), Positives = 67/131 (51%), Gaps = 15/131 (11%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 + + G+PNVGKSTL+N LL R + +G TRD++ N DTAG+R+ Sbjct: 226 VVIAGKPNVGKSTLLNALLNEERAIVSDIAGTTRDTIEDEINIHGVTFRFIDTAGIRET- 284 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLD------ATIPFEKQDLRIVDSVFNTGHAVVL 319 + +E K V+++ + ++ I L D A + + +++R ++ F V Sbjct: 285 --VDVIEAKGVERTREKMKQARLIIYLFDPVQDTIADVETQLEEVRSLNIPF------VT 336 Query: 320 ALNKWDMVSDK 330 +NK D++S++ Sbjct: 337 IINKSDLLSEE 347 >gi|229826871|ref|ZP_04452940.1| hypothetical protein GCWU000182_02255 [Abiotrophia defectiva ATCC 49176] gi|229788489|gb|EEP24603.1| hypothetical protein GCWU000182_02255 [Abiotrophia defectiva ATCC 49176] Length = 455 Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 46/157 (29%), Positives = 84/157 (53%), Gaps = 4/157 (2%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PNVGKS+ N + +++A+V + PG TRD L + + NIVDTAGI + N Sbjct: 223 IVGKPNVGKSSFLNYISGEEVAIVTDIPGTTRDALLQNVSLGDISLNIVDTAGIRETDN- 281 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 I + ++ + +++A L+L +ID ++ D + + ++ K +I+ ++ + Sbjct: 282 EIERMGIERAKEHLSDADLVLMIIDVSKPLSTEDKELLAEIKSKKTVLILNKTDLERGLT 341 Query: 127 QRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 + E + +VEISA+ +G L +I ++F Sbjct: 342 DEEYKEFSEFN---LVEISAKKRIGIERLTEIIKEMF 375 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/127 (24%), Positives = 67/127 (52%), Gaps = 5/127 (3%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 I + ++ +VG+PNVGKS+ +N + G + G TRD++ + + + + I DTA Sbjct: 215 IKEGIKTVIVGKPNVGKSSFLNYISGEEVAIVTDIPGTTRDALLQNVSLGDISLNIVDTA 274 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R+ +E+ ++++ + + + ++++D + P +D ++ + VL Sbjct: 275 GIRETDN---EIERMGIERAKEHLSDADLVLMIIDVSKPLSTEDKELLAEI--KSKKTVL 329 Query: 320 ALNKWDM 326 LNK D+ Sbjct: 330 ILNKTDL 336 >gi|210614312|ref|ZP_03290160.1| hypothetical protein CLONEX_02374 [Clostridium nexile DSM 1787] gi|210150728|gb|EEA81737.1| hypothetical protein CLONEX_02374 [Clostridium nexile DSM 1787] Length = 457 Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 50/160 (31%), Positives = 87/160 (54%), Gaps = 10/160 (6%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PN GKS+L N LV + A+V + G TRD L + G+ NI+DTAGI + ++ Sbjct: 225 IVGKPNAGKSSLLNVLVGEDRAIVTDIEGTTRDVLEESIQLQGISLNIMDTAGIRNTEDI 284 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 + K D+ + NEA LI++++D+ + D I ++ K I++ + + T ++ Sbjct: 285 -VEKIGVDKAKEHANEADLIIYVVDASRNLDENDMEIIQMIQDKKAVILLNKSDLATVVS 343 Query: 127 Q---RNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 + +++ E K ++EISA+ + G EL + +F Sbjct: 344 KDMLKSYIE------KPMIEISAKEESGIKELEQTLKDMF 377 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 40/129 (31%), Positives = 69/129 (53%), Gaps = 5/129 (3%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 I + ++ +VG+PN GKS+L+N L+G +R + G TRD + S + + I DTA Sbjct: 217 IKEGIKTVIVGKPNAGKSSLLNVLVGEDRAIVTDIEGTTRDVLEESIQLQGISLNIMDTA 276 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R I E + V K+ + + I ++DA+ ++ D+ I+ + AV+L Sbjct: 277 GIRNTEDIVEKI---GVDKAKEHANEADLIIYVVDASRNLDENDMEII-QMIQDKKAVIL 332 Query: 320 ALNKWDMVS 328 LNK D+ + Sbjct: 333 -LNKSDLAT 340 >gi|260887478|ref|ZP_05898741.1| tRNA modification GTPase TrmE [Selenomonas sputigena ATCC 35185] gi|330840116|ref|YP_004414696.1| tRNA modification GTPase mnmE [Selenomonas sputigena ATCC 35185] gi|260862765|gb|EEX77265.1| tRNA modification GTPase TrmE [Selenomonas sputigena ATCC 35185] gi|329747880|gb|AEC01237.1| tRNA modification GTPase mnmE [Selenomonas sputigena ATCC 35185] Length = 459 Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 53/170 (31%), Positives = 87/170 (51%), Gaps = 15/170 (8%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 L A+VGRPNVGKS+L+N LL +R + G TRD++ + P+ I DTAG+R Sbjct: 223 LETAIVGRPNVGKSSLLNALLREDRAIVTDVPGTTRDTIEEYADIGGVPLRIIDTAGIRT 282 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 +++E+ V+K+ V++ + L D + P E +D I+ G ++ + K Sbjct: 283 TE---DAVERIGVEKARAHVKSAALVLALFDGSRPLEAEDEEIL--ALLEGKDALIVVTK 337 Query: 324 WDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 D L + L T+ ++NL + I I T + EG+ L ++LE Sbjct: 338 SD-------LPRVLDTERLQNLVHLPLIEITT---KEEEGISPLAAAILE 377 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 47/156 (30%), Positives = 80/156 (51%), Gaps = 4/156 (2%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AIVG PNVGKS+L N L+++ A+V + PG TRD + A I GV I+DTAGI ++ Sbjct: 226 AIVGRPNVGKSSLLNALLREDRAIVTDVPGTTRDTIEEYADIGGVPLRIIDTAGIRTTED 285 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 ++ + ++ + A L+L L D + D I + L K+ I++ + + + Sbjct: 286 -AVERIGVEKARAHVKSAALVLALFDGSRPLEAEDEEILALLEGKDALIVVTKSDLPRVL 344 Query: 126 AQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 + L ++EI+ + + G S L + I + Sbjct: 345 DTERLQNLVHL---PLIEITTKEEEGISPLAAAILE 377 >gi|332361128|gb|EGJ38932.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis SK1056] Length = 479 Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 47/137 (34%), Positives = 84/137 (61%), Gaps = 7/137 (5%) Query: 207 AVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSR 266 A++GRPNVGKS+L+N LL ++ + G TRD + N K P+++ DTAG+R+ Sbjct: 249 AIIGRPNVGKSSLLNNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDD 308 Query: 267 ITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 + +EQ V++S ++++ + +++L+A+ P QD ++++ + + +VL LNK D+ Sbjct: 309 L---VEQIGVERSKKALQEADLVLLVLNASEPLTDQDRQLLE-ISQDSNRIVL-LNKTDL 363 Query: 327 VSDKLNLLQDLRTKAIK 343 +K+ L Q L T IK Sbjct: 364 -EEKIELDQ-LPTDVIK 378 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 48/164 (29%), Positives = 87/164 (53%), Gaps = 14/164 (8%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+++ A+V + G TRD + I GV ++DTAGI + + Sbjct: 249 AIIGRPNVGKSSLLNNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDD 308 Query: 66 CSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +Q+ ++++ A+ EA L+L ++++ +T D + + N I++ NK D Sbjct: 309 --LVEQIGVERSKKALQEADLVLLVLNASEPLTDQDRQLLEISQDSN--RIVLLNKTD-- 362 Query: 125 IAQRNFYEIYSLDF--KEIVEISAEHDLGTSELHSVIFKIFKQK 166 E LD ++++IS H+ ++ I + F +K Sbjct: 363 -----LEEKIELDQLPTDVIKISVLHNQNIDKIEERINQFFFEK 401 >gi|329769256|ref|ZP_08260673.1| tRNA modification GTPase TrmE [Gemella sanguinis M325] gi|328839250|gb|EGF88833.1| tRNA modification GTPase TrmE [Gemella sanguinis M325] Length = 460 Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 42/129 (32%), Positives = 72/129 (55%), Gaps = 5/129 (3%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K I + + A++GRPNVGKS+L+N LL N+ + +G TRD + N K PI++ D Sbjct: 217 KIIKEGINTAIIGRPNVGKSSLLNNLLQENKAIVTDIAGTTRDVLEEYVNIKGVPIKLID 276 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ I +EQ V++S ++ + + LL+++ + D ++ G Sbjct: 277 TAGIRETDDI---VEQIGVQRSKDALEKADLVLFLLNSSEELTEDDKELLK--LTKGKTT 331 Query: 318 VLALNKWDM 326 ++ LNK D+ Sbjct: 332 IVILNKLDL 340 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 47/144 (32%), Positives = 79/144 (54%), Gaps = 14/144 (9%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+++ A+V + G TRD L I GV ++DTAGI + + Sbjct: 226 AIIGRPNVGKSSLLNNLLQENKAIVTDIAGTTRDVLEEYVNIKGVPIKLIDTAGIRETDD 285 Query: 66 CSIAKQMNDQ-TELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I +Q+ Q ++ A+ +A L+LFL++S +T D + + K I++ NK+D Sbjct: 286 --IVEQIGVQRSKDALEKADLVLFLLNSSEELTEDDKELLKLTKGKT--TIVILNKLDLE 341 Query: 125 IAQRNFYEIYSLDFKEIVEISAEH 148 +D +E+ +++ H Sbjct: 342 ---------TKIDLEEVEKLAHNH 356 >gi|310779689|ref|YP_003968022.1| tRNA modification GTPase trmE [Ilyobacter polytropus DSM 2926] gi|309749012|gb|ADO83674.1| tRNA modification GTPase trmE [Ilyobacter polytropus DSM 2926] Length = 455 Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 42/129 (32%), Positives = 72/129 (55%), Gaps = 5/129 (3%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K I + ++ A+VG+PNVGKS+L+N +L R + +G TRD + N K P+ + D Sbjct: 214 KMIKEGVKTAIVGKPNVGKSSLLNTILKEERAIVTHIAGTTRDIIEEVINLKGIPLILVD 273 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R + E++ VKKS + + + ++D + E++D+++ D + V Sbjct: 274 TAGIRTTDDVIENI---GVKKSEDLIDKADLVLFVVDGSRELEEEDIKVHDQL--NADKV 328 Query: 318 VLALNKWDM 326 + LNK DM Sbjct: 329 IGILNKIDM 337 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 59/210 (28%), Positives = 103/210 (49%), Gaps = 24/210 (11%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AIVG PNVGKS+L N ++K++ A+V + G TRD + + G+ +VDTAGI + Sbjct: 223 AIVGKPNVGKSSLLNTILKEERAIVTHIAGTTRDIIEEVINLKGIPLILVDTAGIRTTDD 282 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 I ++E I++A L+LF++D + D + L +I + NK+D Sbjct: 283 V-IENIGVKKSEDLIDKADLVLFVVDGSRELEEEDIKVHDQLNAD--KVIGILNKIDME- 338 Query: 126 AQRNFYEIYSLDFKEI------VEISAEHDLGTSELHSVIFK-IFKQKYPNHPLEMIENN 178 LD + +EISA +LG S + I+K I + + ++I N Sbjct: 339 --------RKLDLTPLNKVGKWIEISATENLGISNMEDEIYKYIISGQVEDSSQKLIITN 390 Query: 179 KRNEESPKENITSEGKSSVKNISKPLRIAV 208 R++ + ++ K +V+NI + + + + Sbjct: 391 VRHKSALEKT-----KQAVENILETINMGL 415 >gi|332366815|gb|EGJ44556.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis SK1059] Length = 479 Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 47/137 (34%), Positives = 84/137 (61%), Gaps = 7/137 (5%) Query: 207 AVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSR 266 A++GRPNVGKS+L+N LL ++ + G TRD + N K P+++ DTAG+R+ Sbjct: 249 AIIGRPNVGKSSLLNNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDD 308 Query: 267 ITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 + +EQ V++S ++++ + +++L+A+ P QD ++++ + + +VL LNK D+ Sbjct: 309 L---VEQIGVERSKKALQEADLVLLVLNASEPLTDQDRQLLE-ISQDSNRIVL-LNKTDL 363 Query: 327 VSDKLNLLQDLRTKAIK 343 +K+ L Q L T IK Sbjct: 364 -EEKIELDQ-LPTDVIK 378 Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 86/161 (53%), Gaps = 14/161 (8%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+++ A+V + G TRD + I GV ++DTAGI + + Sbjct: 249 AIIGRPNVGKSSLLNNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDD 308 Query: 66 CSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +Q+ ++++ A+ EA L+L ++++ +T D + + N I++ NK D Sbjct: 309 --LVEQIGVERSKKALQEADLVLLVLNASEPLTDQDRQLLEISQDSN--RIVLLNKTD-- 362 Query: 125 IAQRNFYEIYSLDF--KEIVEISAEHDLGTSELHSVIFKIF 163 E LD ++++IS H+ ++ I ++F Sbjct: 363 -----LEEKIELDQLPTDVIKISVLHNQNIDKIEERINQLF 398 >gi|116629756|ref|YP_814928.1| GTP-binding protein Era [Lactobacillus gasseri ATCC 33323] gi|116095338|gb|ABJ60490.1| GTPase [Lactobacillus gasseri ATCC 33323] Length = 303 Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 82/161 (50%), Gaps = 6/161 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A++G PNVGKSTL N LV +K+A++ P TR+++ G + +DT GI K Sbjct: 13 VALIGRPNVGKSTLLNFLVGQKVAIMSPQPQTTRNKISGIYTDDQEQIVFIDTPGIHKPK 72 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N + M+ + A++E ++LF+++ + D I L+K P+ +V NK+D Sbjct: 73 N-KLDDFMDKSSYSALDEVDVVLFMVEPEPA-GKGDQYIAELLKKIKKPVFLVINKIDKV 130 Query: 125 IAQRNFYEIYSL----DFKEIVEISAEHDLGTSELHSVIFK 161 + I S DF EIV ISA SEL I K Sbjct: 131 HPDKLLSIIDSYKNLGDFAEIVPISASQGNNVSELIKTIAK 171 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/167 (28%), Positives = 76/167 (45%), Gaps = 11/167 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKSTL+N L+G + Q TR+ +S + I DT G+ KP Sbjct: 13 VALIGRPNVGKSTLLNFLVGQKVAIMSPQPQTTRNKISGIYTDDQEQIVFIDTPGIHKPK 72 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + K+ ++ V ++ + P K D I + + V L +NK D Sbjct: 73 NKLDDFMDKSSYSALDEV----DVVLFMVEPEPAGKGDQYIAELLKKIKKPVFLVINKID 128 Query: 326 MVS-DKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSV 371 V DKL + D + KNL +I IS G + +L+ ++ Sbjct: 129 KVHPDKLLSIID----SYKNLGDFAEIV--PISASQGNNVSELIKTI 169 >gi|260771921|ref|ZP_05880839.1| GTP-binding protein Era [Vibrio metschnikovii CIP 69.14] gi|260613213|gb|EEX38414.1| GTP-binding protein Era [Vibrio metschnikovii CIP 69.14] Length = 321 Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 53/178 (29%), Positives = 90/178 (50%), Gaps = 6/178 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N ++ +K+++ P TR R+ G VDT G+ + Sbjct: 30 IAIVGRPNVGKSTLLNNILGQKISITSRKPQTTRHRIMGVDTKGDYQAVYVDTPGLHIEE 89 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 +I + MN ++++ +L+LF++D T D + + LR+ N P+++ NK+D Sbjct: 90 KRAINRLMNRAASSSLSDVNLVLFVVDG-THWTADDEMVLNKLRQANFPVVLCINKVDNV 148 Query: 124 ---RIAQRNFYEIYSL-DFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 R+ ++ SL +F +IV ISA+ LH + + + P E + + Sbjct: 149 KDRNDVMRHMQDLSSLMNFVDIVPISAKLGKNIDVLHQHVRHHLPKATHHFPEEYVTD 206 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 45/163 (27%), Positives = 78/163 (47%), Gaps = 9/163 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMR-KP 264 IA+VGRPNVGKSTL+N +LG +T + TR + ++ DT G+ + Sbjct: 30 IAIVGRPNVGKSTLLNNILGQKISITSRKPQTTRHRIMGVDTKGDYQAVYVDTPGLHIEE 89 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 R L + S+ V + ++D T + D +++ + VVL +NK Sbjct: 90 KRAINRLMNRAASSSLSDV---NLVLFVVDGT-HWTADDEMVLNKLRQANFPVVLCINKV 145 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDL 367 D V D+ ++++ ++ + +L DI IS + G+ +D L Sbjct: 146 DNVKDRNDVMRHMQD--LSSLMNFVDIV--PISAKLGKNIDVL 184 >gi|238853405|ref|ZP_04643784.1| GTP-binding protein Era [Lactobacillus gasseri 202-4] gi|238833977|gb|EEQ26235.1| GTP-binding protein Era [Lactobacillus gasseri 202-4] Length = 303 Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 82/161 (50%), Gaps = 6/161 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A++G PNVGKSTL N LV +K+A++ P TR+++ G + +DT GI K Sbjct: 13 VALIGRPNVGKSTLLNFLVGQKVAIMSPQPQTTRNKISGIYTDDQEQIVFIDTPGIHKPK 72 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N + M+ + A++E ++LF+++ + D I L+K P+ +V NK+D Sbjct: 73 N-KLDDFMDKSSYSALDEVDVVLFMVEPEPA-GKGDQYIAELLKKIKKPVFLVINKIDKV 130 Query: 125 IAQRNFYEIYSL----DFKEIVEISAEHDLGTSELHSVIFK 161 + I S DF EIV ISA SEL I K Sbjct: 131 HPDKLLSIIDSYKNLGDFAEIVPISASQGNNVSELIKTIAK 171 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/167 (28%), Positives = 76/167 (45%), Gaps = 11/167 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKSTL+N L+G + Q TR+ +S + I DT G+ KP Sbjct: 13 VALIGRPNVGKSTLLNFLVGQKVAIMSPQPQTTRNKISGIYTDDQEQIVFIDTPGIHKPK 72 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + K+ ++ V ++ + P K D I + + V L +NK D Sbjct: 73 NKLDDFMDKSSYSALDEV----DVVLFMVEPEPAGKGDQYIAELLKKIKKPVFLVINKID 128 Query: 326 MVS-DKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSV 371 V DKL + D + KNL +I IS G + +L+ ++ Sbjct: 129 KVHPDKLLSIID----SYKNLGDFAEIV--PISASQGNNVSELIKTI 169 >gi|317496611|ref|ZP_07954958.1| tRNA modification GTPase TrmE [Gemella moribillum M424] gi|316913276|gb|EFV34775.1| tRNA modification GTPase TrmE [Gemella moribillum M424] Length = 460 Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 40/129 (31%), Positives = 71/129 (55%), Gaps = 5/129 (3%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K I + + A++GRPNVGKS+L+N LL N+ + +G TRD + N K PI++ D Sbjct: 217 KIIKEGINTAIIGRPNVGKSSLLNNLLQENKAIVTDIAGTTRDVLEEHVNIKGVPIKLID 276 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ + E + V++S +++ + + LL+++ D ++ G Sbjct: 277 TAGIRETEDVVEKI---GVERSKEALEKADLVLFLLNSSEELTDDDRELLK--LTEGKTT 331 Query: 318 VLALNKWDM 326 ++ LNK D+ Sbjct: 332 IIILNKLDL 340 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 52/159 (32%), Positives = 85/159 (53%), Gaps = 5/159 (3%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+++ A+V + G TRD L I GV ++DTAGI + ++ Sbjct: 226 AIIGRPNVGKSSLLNNLLQENKAIVTDIAGTTRDVLEEHVNIKGVPIKLIDTAGIRETED 285 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 + K ++++ A+ +A L+LFL++S +T D + K II+ ++T+I Sbjct: 286 V-VEKIGVERSKEALEKADLVLFLLNSSEELTDDDRELLKLTEGKTTIIILNKLDLETKI 344 Query: 126 AQRNFYEIYSLDFKE-IVEISAEHDLGTSELHSVIFKIF 163 + EI L + I++ S G EL I +F Sbjct: 345 ---DIEEIEKLTYNHPIIKTSMTTYKGIDELEKNIRDLF 380 >gi|255020153|ref|ZP_05292222.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Acidithiobacillus caldus ATCC 51756] gi|254970295|gb|EET27788.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Acidithiobacillus caldus ATCC 51756] Length = 449 Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 51/199 (25%), Positives = 104/199 (52%), Gaps = 20/199 (10%) Query: 173 EMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTG 232 + +E + + E++ + + + +++ R+A++GRPNVGKS+L+N L G + Sbjct: 192 DALEQALKTSQRRLESLLQQARQGAR-LARGARVALIGRPNVGKSSLLNALAGRESAIVT 250 Query: 233 SQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVL 292 + +G TRD V +E+ DTAG++ + + +E++ +++S +V + + +++ Sbjct: 251 AIAGTTRDLVREELQIGGLTVELVDTAGLQDSA---DPVEREGIRRSRATVASSQWVLLV 307 Query: 293 LDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIY 352 DA ++ D RI+ + + + + NK D+V+ K +L + R PQ+ Sbjct: 308 ADAAAGWKSDDARILAELDS--QRLTIVWNKGDLVA-KAPVLPEPR-------PQL---- 353 Query: 353 INTISGRTGEGLDDLMVSV 371 +S RTG GLD L + + Sbjct: 354 --VVSARTGAGLDALRMEL 370 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 63/118 (53%), Gaps = 3/118 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A++G PNVGKS+L N L ++ A+V G TRD + + I G+ +VDTAG+ D Sbjct: 224 VALIGRPNVGKSSLLNALAGRESAIVTAIAGTTRDLVREELQIGGLTVELVDTAGLQDSA 283 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + + ++ ++ + + +L + D+ AG D I + L + + IV NK D Sbjct: 284 D-PVEREGIRRSRATVASSQWVLLVADAAAGWKSDDARILAELDSQR--LTIVWNKGD 338 >gi|298369787|ref|ZP_06981103.1| GTP-binding protein Era [Neisseria sp. oral taxon 014 str. F0314] gi|298281247|gb|EFI22736.1| GTP-binding protein Era [Neisseria sp. oral taxon 014 str. F0314] Length = 308 Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 50/179 (27%), Positives = 87/179 (48%), Gaps = 8/179 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N L+ +K+++ TR+R+ G + F VDT G Sbjct: 22 IAIVGRPNVGKSTLMNHLIGQKISITSKKAQTTRNRVTGIYTDDTAQFVFVDTPGFQTNH 81 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 ++ ++N A++ ++F++++ T D + L K+ P+I+V NK+D Sbjct: 82 RNALNDRLNQNVTEALSGVDAVVFVVEAMR-FTEADRTVIKQL-PKHTPVILVVNKIDKG 139 Query: 125 IAQRNFYEIY------SLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 A + E + +F +SA+H LG + L + + P +P +M+ + Sbjct: 140 KADKYRLEAFIREVGAEFEFAGHEAVSAKHGLGIARLLERLKPYLPESVPMYPEDMVTD 198 Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 4/120 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA+VGRPNVGKSTL+N L+G +T ++ TR+ V+ + DT G + Sbjct: 22 IAIVGRPNVGKSTLMNHLIGQKISITSKKAQTTRNRVTGIYTDDTAQFVFVDTPGFQTNH 81 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 R +L + + +++ + + +++A + F + D R V V+L +NK D Sbjct: 82 R--NALNDRLNQNVTEALSGVDAVVFVVEA-MRFTEAD-RTVIKQLPKHTPVILVVNKID 137 >gi|291615448|ref|YP_003525605.1| tRNA modification GTPase TrmE [Sideroxydans lithotrophicus ES-1] gi|291585560|gb|ADE13218.1| tRNA modification GTPase TrmE [Sideroxydans lithotrophicus ES-1] Length = 447 Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 42/119 (35%), Positives = 71/119 (59%), Gaps = 3/119 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + +VGAPN GKS+L NR +++A+V PG TRD + + GV +++DTAG+ + Sbjct: 219 VVLVGAPNAGKSSLLNRFAGEEIALVSEIPGTTRDSIRQALQVRGVPLHLIDTAGLRE-T 277 Query: 65 NCSIAKQMNDQTELAINEAHLILFLID-SKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 N ++ + +T+LA+ A ++L L+D S+ P D A+ + L K P + + NK+D Sbjct: 278 NDAVEQMGIARTKLALTRADVVLVLLDESRRRTEPEDFAVLAQLPAKT-PCLYLHNKVD 335 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 39/142 (27%), Positives = 72/142 (50%), Gaps = 10/142 (7%) Query: 160 FKIFKQKYPNHPLEMIENNKRNEESPKENITSEGKSSVKNISKP-------LRIAVVGRP 212 ++ + + P E IE R + K NI +G + + ++K ++ +VG P Sbjct: 166 LRMLVEATLDFPEEEIETADRLLCASKLNILMDGLARIAGLAKQGSILREGAQVVLVGAP 225 Query: 213 NVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLE 272 N GKS+L+NR G L G TRDS+ + + P+ + DTAG+R+ + +++E Sbjct: 226 NAGKSSLLNRFAGEEIALVSEIPGTTRDSIRQALQVRGVPLHLIDTAGLRETN---DAVE 282 Query: 273 QKTVKKSMQSVRTCETTIVLLD 294 Q + ++ ++ + +VLLD Sbjct: 283 QMGIARTKLALTRADVVLVLLD 304 >gi|148243337|ref|YP_001228494.1| tRNA modification GTPase TrmE [Synechococcus sp. RCC307] gi|205829180|sp|A5GW82|MNME_SYNR3 RecName: Full=tRNA modification GTPase mnmE gi|147851647|emb|CAK29141.1| tRNA modification GTPase [Synechococcus sp. RCC307] Length = 453 Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 52/179 (29%), Positives = 85/179 (47%), Gaps = 13/179 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKS+L N L + A+V + PG TRD L ++ GV ++DTAGI Sbjct: 227 VAIIGRPNVGKSSLLNALSGHERAIVTDLPGTTRDLLDYDLVLQGVPITLLDTAGIR--S 284 Query: 65 NCSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 +Q+ +++ A A ++ L D G +P D A+ + + P+++V NK D Sbjct: 285 TADRVEQLGIERSRAAFASADAVVLLYDLSRGWSPDDSALRNEV-PDGTPLLVVGNKSDL 343 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 + + ISA LG +EL S + K+ L + N ++ + Sbjct: 344 AAEPAT---------TQGLAISARSGLGLAELSSALLKLCGLSGEGQGLLLALNQRQCD 393 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 52/215 (24%), Positives = 106/215 (49%), Gaps = 23/215 (10%) Query: 163 FKQKYPNHPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINR 222 F++ P+ + R+ + + + +G+ + + + LR+A++GRPNVGKS+L+N Sbjct: 185 FEEDLPSLDGAAVCTALRDVQQALDQLVLDGQQA-QLLRDGLRVAIIGRPNVGKSSLLNA 243 Query: 223 LLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQS 282 L G+ R + G TRD + + PI + DTAG+R + + +EQ +++S + Sbjct: 244 LSGHERAIVTDLPGTTRDLLDYDLVLQGVPITLLDTAGIRSTA---DRVEQLGIERSRAA 300 Query: 283 VRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAI 342 + + ++L D + + D + + V + G +++ NK D+ ++ T+ + Sbjct: 301 FASADAVVLLYDLSRGWSPDDSALRNEVPD-GTPLLVVGNKSDLAAEPAT------TQGL 353 Query: 343 KNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKL 377 IS R+G GL +L ++L++ L Sbjct: 354 ------------AISARSGLGLAELSSALLKLCGL 376 >gi|122701619|emb|CAL88199.1| GTPase [Helicobacter pylori] Length = 170 Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 51/156 (32%), Positives = 82/156 (52%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +N ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNSHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERSYAFSSFGTPKSFNISVSHNRGISAL 158 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD +H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNSHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|311110602|ref|ZP_07711999.1| GTP-binding protein Era [Lactobacillus gasseri MV-22] gi|311065756|gb|EFQ46096.1| GTP-binding protein Era [Lactobacillus gasseri MV-22] Length = 302 Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 82/161 (50%), Gaps = 6/161 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A++G PNVGKSTL N LV +K+A++ P TR+++ G + +DT GI K Sbjct: 12 VALIGRPNVGKSTLLNFLVGQKVAIMSPQPQTTRNKISGIYTDDQEQIVFIDTPGIHKPK 71 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N + M+ + A++E ++LF+++ + D I L+K P+ +V NK+D Sbjct: 72 N-KLDDFMDKSSYSALDEVDVVLFMVEPEPA-GKGDQYIAELLKKIKKPVFLVINKIDKV 129 Query: 125 IAQRNFYEIYSL----DFKEIVEISAEHDLGTSELHSVIFK 161 + I S DF EIV ISA SEL I K Sbjct: 130 HPDKLLSIIDSYKNLGDFAEIVPISASQGNNVSELIKTIAK 170 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/167 (28%), Positives = 76/167 (45%), Gaps = 11/167 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKSTL+N L+G + Q TR+ +S + I DT G+ KP Sbjct: 12 VALIGRPNVGKSTLLNFLVGQKVAIMSPQPQTTRNKISGIYTDDQEQIVFIDTPGIHKPK 71 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + K+ ++ V ++ + P K D I + + V L +NK D Sbjct: 72 NKLDDFMDKSSYSALDEV----DVVLFMVEPEPAGKGDQYIAELLKKIKKPVFLVINKID 127 Query: 326 MVS-DKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSV 371 V DKL + D + KNL +I IS G + +L+ ++ Sbjct: 128 KVHPDKLLSIID----SYKNLGDFAEIV--PISASQGNNVSELIKTI 168 >gi|294501286|ref|YP_003564986.1| GTP-binding protein Era [Bacillus megaterium QM B1551] gi|295706633|ref|YP_003599708.1| GTP-binding protein Era [Bacillus megaterium DSM 319] gi|294351223|gb|ADE71552.1| GTP-binding protein Era [Bacillus megaterium QM B1551] gi|294804292|gb|ADF41358.1| GTP-binding protein Era [Bacillus megaterium DSM 319] Length = 301 Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 53/173 (30%), Positives = 89/173 (51%), Gaps = 13/173 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 ++I+G PNVGKST NR++ +K+A++ + P TR+++ G + +DT GI K Sbjct: 11 VSIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKIQGVYTEDQAQIVFIDTPGIHKPK 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + M + + E LILF+I++ G+ D I L+ P+ +V NK+D Sbjct: 71 H-KLGDFMMKVAQNTLKEVDLILFMINATEGLGRGDEFIIERLKDTKTPVFLVINKIDEI 129 Query: 125 IAQR------NFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHP 171 N+ ++Y F EIV ISA L + + ++ +I KQ+ P P Sbjct: 130 HPDELFSIITNYKDLYP--FAEIVPISA---LQGNNVERLLDQI-KQRLPEGP 176 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/122 (26%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 ++++GRPNVGKST +NR++G + + TR+ + + I DT G+ KP Sbjct: 11 VSIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKIQGVYTEDQAQIVFIDTPGIHKPK 70 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L +K + +++ + + +++AT + D I++ + +T V L +NK D Sbjct: 71 ---HKLGDFMMKVAQNTLKEVDLILFMINATEGLGRGDEFIIERLKDTKTPVFLVINKID 127 Query: 326 MV 327 + Sbjct: 128 EI 129 >gi|51858159|dbj|BAD42317.1| Thiophene and furan oxidation protein [Symbiobacterium thermophilum IAM 14863] Length = 437 Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 56/182 (30%), Positives = 92/182 (50%), Gaps = 13/182 (7%) Query: 193 GKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHP 252 G + + + + LR + GRPNVGKS+L+NRL+ NR + G TRD ++ P Sbjct: 191 GARTGRILREGLRAVLAGRPNVGKSSLLNRLVRENRAIVTPIPGTTRDVIAEWVELGGVP 250 Query: 253 IEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFN 312 +++FDTAG+R P+ + +E+ V ++ +++ +V++DA +D + S Sbjct: 251 VQLFDTAGLR-PT--DDPVERIGVARTHEALAQAHLVLVVVDAAAGLGPEDREWI-SQLP 306 Query: 313 TGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVL 372 G A V NK D+ + L LR +A+ P +G +S TGEG D L V Sbjct: 307 QGAARVGVANKIDL--NPAFELSALR-EALGGAPVVG------VSAETGEGFDALEAEVA 357 Query: 373 EI 374 + Sbjct: 358 RV 359 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 50/156 (32%), Positives = 81/156 (51%), Gaps = 2/156 (1%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 + G PNVGKS+L NRLV++ A+V PG TRD + + GV + DTAG+ + Sbjct: 206 LAGRPNVGKSSLLNRLVRENRAIVTPIPGTTRDVIAEWVELGGVPVQLFDTAGLRPTDD- 264 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 + + +T A+ +AHL+L ++D+ AG+ P D S L + + V+NK+D A Sbjct: 265 PVERIGVARTHEALAQAHLVLVVVDAAAGLGPEDREWISQL-PQGAARVGVANKIDLNPA 323 Query: 127 QRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKI 162 +L +V +SAE G L + + ++ Sbjct: 324 FELSALREALGGAPVVGVSAETGEGFDALEAEVARV 359 >gi|94311353|ref|YP_584563.1| GTP-binding protein Era [Cupriavidus metallidurans CH34] gi|93355205|gb|ABF09294.1| membrane-associated, 16S rRNA-binding GTPase [Cupriavidus metallidurans CH34] Length = 312 Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 52/186 (27%), Positives = 92/186 (49%), Gaps = 12/186 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AIVG PNVGKSTL N LV +K+++ TR R+ G + + DT G Sbjct: 24 TVAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRIVGIQTTDDTQYVFADTPGFQTR 83 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 ++ + +N ++ ++LF++++ P D + S L KN+P+++V NK+D Sbjct: 84 HASALNRSLNRAVTSTLSSVDIVLFVVEA-GYFGPDDEKVLSLL-PKNVPVLLVCNKLD- 140 Query: 124 RIAQRN------FYEIYS--LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLE-M 174 RI + F E F+E+V +SA+ L ++I + P + ++ M Sbjct: 141 RIGEGRSEVMMPFLEQMGQRFPFREVVPMSAKTRDHIQRLLAIIRPYLPEGEPMYDVDAM 200 Query: 175 IENNKR 180 + ++R Sbjct: 201 TDRSER 206 Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust. Identities = 39/126 (30%), Positives = 57/126 (45%), Gaps = 8/126 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGM--RK 263 +A+VGRPNVGKSTL+N L+G +T ++ TR + + DT G R Sbjct: 25 VAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRIVGIQTTDDTQYVFADTPGFQTRH 84 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 S + SL + V ++ SV IVL + D V S+ V+L NK Sbjct: 85 ASALNRSL-NRAVTSTLSSV-----DIVLFVVEAGYFGPDDEKVLSLLPKNVPVLLVCNK 138 Query: 324 WDMVSD 329 D + + Sbjct: 139 LDRIGE 144 >gi|257865833|ref|ZP_05645486.1| GTP-binding protein Era [Enterococcus casseliflavus EC30] gi|257872168|ref|ZP_05651821.1| GTP-binding protein Era [Enterococcus casseliflavus EC10] gi|257875461|ref|ZP_05655114.1| GTP-binding protein Era [Enterococcus casseliflavus EC20] gi|325569848|ref|ZP_08145842.1| GTP-binding protein Era [Enterococcus casseliflavus ATCC 12755] gi|257799767|gb|EEV28819.1| GTP-binding protein Era [Enterococcus casseliflavus EC30] gi|257806332|gb|EEV35154.1| GTP-binding protein Era [Enterococcus casseliflavus EC10] gi|257809627|gb|EEV38447.1| GTP-binding protein Era [Enterococcus casseliflavus EC20] gi|325156971|gb|EGC69139.1| GTP-binding protein Era [Enterococcus casseliflavus ATCC 12755] Length = 299 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 52/146 (35%), Positives = 76/146 (52%), Gaps = 5/146 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL NR+V +K+A++ + TR+++ G + +DT GI K Sbjct: 9 VAIVGRPNVGKSTLLNRVVGQKIAIMSDKAQTTRNKIQGVYTTDDAQLIFIDTPGIHKPK 68 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 + + M + A+ E + LF+I + D I LR+ P+ +V NK+D Sbjct: 69 H-RLGDFMVETAYSALREVDVTLFMISADQKRGKGDDFIIERLRQSQTPVFLVINKIDKV 127 Query: 124 -RIAQRNFYEIYS--LDFKEIVEISA 146 A E YS +DF EIV ISA Sbjct: 128 HPDALLAIIEDYSSQMDFAEIVPISA 153 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VGRPNVGKSTL+NR++G + ++ TR+ + + + + DT G+ KP Sbjct: 9 VAIVGRPNVGKSTLLNRVVGQKIAIMSDKAQTTRNKIQGVYTTDDAQLIFIDTPGIHKPK 68 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L V+ + ++R + T+ ++ A K D I++ + + V L +NK D Sbjct: 69 H---RLGDFMVETAYSALREVDVTLFMISADQKRGKGDDFIIERLRQSQTPVFLVINKID 125 Query: 326 MV 327 V Sbjct: 126 KV 127 >gi|229824620|ref|ZP_04450689.1| hypothetical protein GCWU000282_01967 [Catonella morbi ATCC 51271] gi|229785991|gb|EEP22105.1| hypothetical protein GCWU000282_01967 [Catonella morbi ATCC 51271] Length = 460 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 44/140 (31%), Positives = 78/140 (55%), Gaps = 10/140 (7%) Query: 202 KPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGM 261 + ++ A++GRPNVGKS+L+N L+G ++ + +G TRD++ + K P+ I DTAG+ Sbjct: 220 EGIKTAIIGRPNVGKSSLLNYLIGEDKAIVTDIAGTTRDTIEEYISIKGVPLHIIDTAGI 279 Query: 262 RKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLAL 321 R E +EQ V+KS + + + +++L+ + DL +++ N A ++ L Sbjct: 280 RHTD---EVVEQIGVEKSRAMIESADLILLILNQAQALDPMDLELLELTQN--KARIILL 334 Query: 322 NKWDM-----VSDKLNLLQD 336 NK D+ + D LQD Sbjct: 335 NKQDLPNQWSIEDLAGHLQD 354 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/118 (34%), Positives = 63/118 (53%), Gaps = 5/118 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+ + A+V + G TRD + I GV +I+DTAGI Sbjct: 225 AIIGRPNVGKSSLLNYLIGEDKAIVTDIAGTTRDTIEEYISIKGVPLHIIDTAGIR--HT 282 Query: 66 CSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + +Q+ +++ I A LIL +++ + P D + + K II+ NK D Sbjct: 283 DEVVEQIGVEKSRAMIESADLILLILNQAQALDPMDLELLELTQNK--ARIILLNKQD 338 >gi|296114112|ref|YP_003628050.1| tRNA modification GTPase TrmE [Moraxella catarrhalis RH4] gi|295921806|gb|ADG62157.1| tRNA modification GTPase TrmE [Moraxella catarrhalis RH4] Length = 466 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 50/175 (28%), Positives = 87/175 (49%), Gaps = 23/175 (13%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 + + + G+PN GKS+L+NRL G R + +G TRD++ + + + DTAG+RK Sbjct: 221 VHVVLAGKPNAGKSSLLNRLSGTERAIVTEIAGTTRDTLEETLILNGLTVHLTDTAGLRK 280 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTG--------- 314 + +E+ +K++ ++R + +++ D T E L + D +F G Sbjct: 281 TD---DHVEKIGIKRAFDAIRQADVLMMVYDVTT--ETDPLALADQLFCEGVTEDVGDII 335 Query: 315 -HAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLM 368 ++L NK D++ K L TK+ L +Y +S TGEGLD+L+ Sbjct: 336 RQKLILVANKSDLLVSKPVLQVSCETKSAPKL-----VY---VSCETGEGLDELI 382 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 53/191 (27%), Positives = 85/191 (44%), Gaps = 40/191 (20%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + + G PN GKS+L NRL + A+V G TRD L I+NG+ ++ DTAG+ Sbjct: 223 VVLAGKPNAGKSSLLNRLSGTERAIVTEIAGTTRDTLEETLILNGLTVHLTDTAGL---- 278 Query: 65 NCSIAKQMNDQTEL--------AINEAHLILFLIDSKAGITPYDHA-----------ITS 105 ++ +D E AI +A +++ + D P A + Sbjct: 279 -----RKTDDHVEKIGIKRAFDAIRQADVLMMVYDVTTETDPLALADQLFCEGVTEDVGD 333 Query: 106 FLRKKNIPIIIVSNKMDTRIAQRNFYEIYSLDFK---EIVEISAEHDLGTSELHSVIFKI 162 +R+K +I+V+NK D +++ S + K ++V +S E G EL +I Sbjct: 334 IIRQK---LILVANKSDLLVSKPVLQ--VSCETKSAPKLVYVSCETGEGLDEL----IEI 384 Query: 163 FKQKYPNHPLE 173 QK HP E Sbjct: 385 LTQKVGFHPPE 395 >gi|74318842|ref|YP_316582.1| tRNA modification GTPase TrmE [Thiobacillus denitrificans ATCC 25259] gi|123611091|sp|Q3SF39|MNME_THIDA RecName: Full=tRNA modification GTPase mnmE gi|74058337|gb|AAZ98777.1| tRNA modification GTPase TrmE [Thiobacillus denitrificans ATCC 25259] Length = 446 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 52/192 (27%), Positives = 96/192 (50%), Gaps = 30/192 (15%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + L + +VG+PNVGKS+L+NRL G++ + +G TRD+V + + PI + DTA Sbjct: 217 LREGLTVVLVGQPNVGKSSLLNRLAGFDAAIVTEIAGTTRDTVREAIQIEGVPIHVIDTA 276 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIV----DSVFNTGH 315 G+R+ S + +EQ + +S ++V + ++L+DA + +I+ D V T H Sbjct: 277 GLRETS---DPIEQLGIARSWEAVEKADVALLLVDAAHGVGAHEAQILAKLPDVVRLTVH 333 Query: 316 AVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEIN 375 NK D+ + D +I+ +S ++GEG+D L +L+ Sbjct: 334 ------NKIDVAGEAPRATAD-------------EIW---LSAKSGEGVDLLRAKLLQAA 371 Query: 376 KLWKTRITTSYL 387 W+ +++ Sbjct: 372 G-WQAAGEGAFM 382 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 40/123 (32%), Positives = 65/123 (52%), Gaps = 11/123 (8%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+ +VG PNVGKS+L NRL A+V G TRD + I GV +++DTAG+ + Sbjct: 222 TVVLVGQPNVGKSSLLNRLAGFDAAIVTEIAGTTRDTVREAIQIEGVPIHVIDTAGLRET 281 Query: 64 KN----CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 + IA+ A+ +A + L L+D+ G+ ++ I + L ++ + V N Sbjct: 282 SDPIEQLGIARSWE-----AVEKADVALLLVDAAHGVGAHEAQILAKL--PDVVRLTVHN 334 Query: 120 KMD 122 K+D Sbjct: 335 KID 337 >gi|329925110|ref|ZP_08280054.1| tRNA modification GTPase TrmE [Paenibacillus sp. HGF5] gi|328940229|gb|EGG36561.1| tRNA modification GTPase TrmE [Paenibacillus sp. HGF5] Length = 458 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 40/123 (32%), Positives = 72/123 (58%), Gaps = 5/123 (4%) Query: 207 AVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSR 266 A+VGRPNVGKS+L+N L NR + G TRD + N P+++ DTAG+R+ Sbjct: 224 AIVGRPNVGKSSLLNTLAQDNRAIVTDIPGTTRDVIEEFVTINNIPLKLLDTAGIRETMD 283 Query: 267 ITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 + +EQ V++S +V + +++L+A+ P + +L +++ + G ++ +NK D+ Sbjct: 284 V---VEQIGVERSKHAVNEADLILLVLNASEPLHQDELELMEQI--RGRQCIVIMNKMDL 338 Query: 327 VSD 329 S+ Sbjct: 339 PSN 341 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 42/120 (35%), Positives = 70/120 (58%), Gaps = 5/120 (4%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T AIVG PNVGKS+L N L + A+V + PG TRD + IN + ++DTAGI + Sbjct: 222 TTAIVGRPNVGKSSLLNTLAQDNRAIVTDIPGTTRDVIEEFVTINNIPLKLLDTAGIRE- 280 Query: 64 KNCSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + +Q+ ++++ A+NEA LIL ++++ + + + +R + I++ NKMD Sbjct: 281 -TMDVVEQIGVERSKHAVNEADLILLVLNASEPLHQDELELMEQIRGRQ--CIVIMNKMD 337 >gi|148242816|ref|YP_001227973.1| GTP-binding protein Era-like protein [Synechococcus sp. RCC307] gi|147851126|emb|CAK28620.1| GTP-binding protein era homolog [Synechococcus sp. RCC307] Length = 309 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 48/168 (28%), Positives = 89/168 (52%), Gaps = 8/168 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VGRPNVGKSTL+N+L+G +T + TR+ + + + + DT G+ KP Sbjct: 22 VALVGRPNVGKSTLLNQLVGEKVAITSPVAQTTRNRLRAILTTECSQLVLVDTPGIHKPH 81 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + L ++ VK + S+ + + L+D + P + D ++D + + VV+ LNK D Sbjct: 82 HL---LGERLVKTARNSIGEVDVVLALMDGSEPMGRGDQFVLDLLKSIRQPVVIGLNKQD 138 Query: 326 MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 +++++ ++L + LP D + S TG+G L+ ++ E Sbjct: 139 LIAEEQR--EELNASYSEVLP---DAPLLPFSALTGDGCSALVEALGE 181 Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 40/129 (31%), Positives = 64/129 (49%), Gaps = 2/129 (1%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTL N+LV +K+A+ TR+RL +VDT GI Sbjct: 22 VALVGRPNVGKSTLLNQLVGEKVAITSPVAQTTRNRLRAILTTECSQLVLVDTPGIHKPH 81 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + +++ +I E ++L L+D + D + L+ P++I NK D Sbjct: 82 HL-LGERLVKTARNSIGEVDVVLALMDGSEPMGRGDQFVLDLLKSIRQPVVIGLNKQDL- 139 Query: 125 IAQRNFYEI 133 IA+ E+ Sbjct: 140 IAEEQREEL 148 >gi|291543431|emb|CBL16540.1| tRNA modification GTPase TrmE [Ruminococcus sp. 18P13] Length = 454 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 56/161 (34%), Positives = 81/161 (50%), Gaps = 18/161 (11%) Query: 208 VVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK-PSR 266 +VGRPNVGKSTL+NRL G+ R + +G TRD V S + + + DTAG+R P R Sbjct: 224 IVGRPNVGKSTLMNRLSGFERSIVTDIAGTTRDVVEESVRLGDLTLRLSDTAGLRDTPDR 283 Query: 267 ITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 I EQ V+ + + + E + + D+T P QD ++ S AV + NK D Sbjct: 284 I----EQLGVEIAYRRLEEAELILAVFDSTAPLLPQDRELI-SRIGKRRAVAIC-NKSDA 337 Query: 327 VSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDL 367 S +L D + Y+ IS +TGEG++ L Sbjct: 338 GS---SLTPDELSAHFA--------YVIPISAKTGEGMEQL 367 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 58/191 (30%), Positives = 94/191 (49%), Gaps = 15/191 (7%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PNVGKSTL NRL + ++V + G TRD + + + + DTAG+ D + Sbjct: 224 IVGRPNVGKSTLMNRLSGFERSIVTDIAGTTRDVVEESVRLGDLTLRLSDTAGLRDTPD- 282 Query: 67 SIAKQMNDQTELA---INEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 +Q+ E+A + EA LIL + DS A + P D + S + K+ + + NK D Sbjct: 283 -RIEQLG--VEIAYRRLEEAELILAVFDSTAPLLPQDRELISRIGKRR--AVAICNKSDA 337 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE- 182 + S F ++ ISA+ G +L S + +F P+ P + +N+R + Sbjct: 338 --GSSLTPDELSAHFAYVIPISAKTGEGMEQLSSALHALFLSDAPD-PQAGVLSNERQKL 394 Query: 183 --ESPKENITS 191 E E+I++ Sbjct: 395 CVERAMEHISA 405 >gi|227890109|ref|ZP_04007914.1| GTP-binding protein Era [Lactobacillus johnsonii ATCC 33200] gi|268319372|ref|YP_003293028.1| GTP-binding protein [Lactobacillus johnsonii FI9785] gi|227849553|gb|EEJ59639.1| GTP-binding protein Era [Lactobacillus johnsonii ATCC 33200] gi|262397747|emb|CAX66761.1| GTP-binding protein [Lactobacillus johnsonii FI9785] Length = 303 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 81/161 (50%), Gaps = 6/161 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A++G PNVGKSTL N LV +K+A++ P TR+++ G + +DT GI K Sbjct: 13 VALIGRPNVGKSTLLNYLVGQKVAIMSPQPQTTRNKISGIYTDDQEQIVFIDTPGIHKPK 72 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N + M+ + A++E ++LF+++ + D I L+K P+ +V NK+D Sbjct: 73 N-KLDDFMDKSSYSALDEVDVVLFMVEPEPA-GKGDQYIAELLKKIKKPVFLVINKIDKV 130 Query: 125 IAQRNFYEIYSL----DFKEIVEISAEHDLGTSELHSVIFK 161 I S DF EIV ISA SEL I K Sbjct: 131 HPDELLSIIDSYKNLGDFAEIVPISASQGNNVSELIKTIAK 171 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 76/167 (45%), Gaps = 11/167 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKSTL+N L+G + Q TR+ +S + I DT G+ KP Sbjct: 13 VALIGRPNVGKSTLLNYLVGQKVAIMSPQPQTTRNKISGIYTDDQEQIVFIDTPGIHKPK 72 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + K+ ++ V ++ + P K D I + + V L +NK D Sbjct: 73 NKLDDFMDKSSYSALDEV----DVVLFMVEPEPAGKGDQYIAELLKKIKKPVFLVINKID 128 Query: 326 MVS-DKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSV 371 V D+L + D + KNL +I IS G + +L+ ++ Sbjct: 129 KVHPDELLSIID----SYKNLGDFAEIV--PISASQGNNVSELIKTI 169 >gi|261410105|ref|YP_003246346.1| tRNA modification GTPase TrmE [Paenibacillus sp. Y412MC10] gi|261286568|gb|ACX68539.1| tRNA modification GTPase TrmE [Paenibacillus sp. Y412MC10] Length = 458 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 40/123 (32%), Positives = 72/123 (58%), Gaps = 5/123 (4%) Query: 207 AVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSR 266 A+VGRPNVGKS+L+N L NR + G TRD + N P+++ DTAG+R+ Sbjct: 224 AIVGRPNVGKSSLLNTLAQDNRAIVTDIPGTTRDVIEEFVTINNIPLKLLDTAGIRETMD 283 Query: 267 ITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 + +EQ V++S +V + +++L+A+ P + +L +++ + G ++ +NK D+ Sbjct: 284 V---VEQIGVERSKHAVNEADLILLVLNASEPLHQDELELMEQI--RGRQCIVIMNKMDL 338 Query: 327 VSD 329 S+ Sbjct: 339 PSN 341 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 42/120 (35%), Positives = 70/120 (58%), Gaps = 5/120 (4%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T AIVG PNVGKS+L N L + A+V + PG TRD + IN + ++DTAGI + Sbjct: 222 TTAIVGRPNVGKSSLLNTLAQDNRAIVTDIPGTTRDVIEEFVTINNIPLKLLDTAGIRE- 280 Query: 64 KNCSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + +Q+ ++++ A+NEA LIL ++++ + + + +R + I++ NKMD Sbjct: 281 -TMDVVEQIGVERSKHAVNEADLILLVLNASEPLHQDELELMEQIRGRQ--CIVIMNKMD 337 >gi|157149742|ref|YP_001450550.1| tRNA modification GTPase TrmE [Streptococcus gordonii str. Challis substr. CH1] gi|189036214|sp|A8AXP0|MNME_STRGC RecName: Full=tRNA modification GTPase mnmE gi|157074536|gb|ABV09219.1| tRNA modification GTPase TrmE [Streptococcus gordonii str. Challis substr. CH1] Length = 457 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 43/129 (33%), Positives = 81/129 (62%), Gaps = 6/129 (4%) Query: 207 AVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSR 266 A++GRPNVGKS+L+N LL ++ + +G TRD + N K P+++ DTAG+R+ Sbjct: 227 AIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPLKLIDTAGIRETDD 286 Query: 267 ITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 + +EQ V++S ++++ + +++L+A+ P QD ++++ + + +VL LNK D+ Sbjct: 287 L---VEQIGVERSKKALQEADLVLLVLNASEPLTDQDKQLLE-ISQDSNRIVL-LNKTDL 341 Query: 327 VSDKLNLLQ 335 +K+ L Q Sbjct: 342 -EEKIELDQ 349 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 48/161 (29%), Positives = 86/161 (53%), Gaps = 14/161 (8%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+++ A+V + G TRD + I GV ++DTAGI + + Sbjct: 227 AIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPLKLIDTAGIRETDD 286 Query: 66 CSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +Q+ ++++ A+ EA L+L ++++ +T D + + N I++ NK D Sbjct: 287 --LVEQIGVERSKKALQEADLVLLVLNASEPLTDQDKQLLEISQDSN--RIVLLNKTD-- 340 Query: 125 IAQRNFYEIYSLDF--KEIVEISAEHDLGTSELHSVIFKIF 163 E LD +I++IS H+ ++ I ++F Sbjct: 341 -----LEEKIELDQLPTDIIKISVLHNQNIDKIEERINQLF 376 >gi|331266427|ref|YP_004326057.1| tRNA modification GTPase TrmE [Streptococcus oralis Uo5] gi|326683099|emb|CBZ00717.1| tRNA modification GTPase TrmE [Streptococcus oralis Uo5] Length = 457 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 74/120 (61%), Gaps = 5/120 (4%) Query: 207 AVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSR 266 A++GRPNVGKS+L+N LL ++ + +G TRD + N P+++ DTAG+R+ Sbjct: 227 AIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDD 286 Query: 267 ITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 I +EQ V++S ++++ + +++L+A+ P QD ++++ +T ++ LNK D+ Sbjct: 287 I---VEQIGVERSKKALKEADLVLLVLNASEPLAAQDRQLLEISQDTNR--IILLNKTDL 341 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 41/118 (34%), Positives = 69/118 (58%), Gaps = 5/118 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+++ A+V + G TRD + INGV ++DTAGI + + Sbjct: 227 AIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDD 286 Query: 66 CSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 I +Q+ ++++ A+ EA L+L ++++ + D + + N II+ NK D Sbjct: 287 --IVEQIGVERSKKALKEADLVLLVLNASEPLAAQDRQLLEISQDTN--RIILLNKTD 340 >gi|237741002|ref|ZP_04571483.1| thiophene and furan oxidation protein thdf [Fusobacterium sp. 4_1_13] gi|229431046|gb|EEO41258.1| thiophene and furan oxidation protein thdf [Fusobacterium sp. 4_1_13] Length = 455 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 47/156 (30%), Positives = 86/156 (55%), Gaps = 7/156 (4%) Query: 171 PLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLL 230 P +++N K+ K+ ++S K + I ++ A++G+PNVGKS+++N LL +R + Sbjct: 189 PENLVDNLKKASAEIKDLVSSYDKGKI--IKDGIKTAIIGKPNVGKSSILNSLLREDRAI 246 Query: 231 TGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTI 290 G TRD + N P+ + DTAG+R I E++ V+KS + + + + + Sbjct: 247 VTHIPGTTRDIIEEVININGIPLLLIDTAGIRNTDDIVENI---GVEKSKELINSADLIL 303 Query: 291 VLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 ++D + +++D RI D + NT V+ LNK D+ Sbjct: 304 YVIDTSREIDEEDYRIYD-IINT-DKVIGILNKIDI 337 Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 57/180 (31%), Positives = 94/180 (52%), Gaps = 7/180 (3%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS++ N L+++ A+V + PG TRD + ING+ ++DTAGI + + Sbjct: 223 AIIGKPNVGKSSILNSLLREDRAIVTHIPGTTRDIIEEVININGIPLLLIDTAGIRNTDD 282 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 + EL IN A LIL++ID+ I D+ I + +I + NK+D + Sbjct: 283 IVENIGVEKSKEL-INSADLILYVIDTSREIDEEDYRIYDIINTD--KVIGILNKIDIK- 338 Query: 126 AQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK-IFKQKYPNHPLEMIENNKRNEES 184 RN ++ +EISA G L + I+K I K+ + +++ N R++ + Sbjct: 339 --RNTDLSEFPKIEKWIEISALSKTGIDNLENEIYKYIMKENVEDSSQKLVITNVRHKSA 396 >gi|329770520|ref|ZP_08261898.1| GTP-binding protein Era [Gemella sanguinis M325] gi|328836269|gb|EGF85938.1| GTP-binding protein Era [Gemella sanguinis M325] Length = 302 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 58/200 (29%), Positives = 99/200 (49%), Gaps = 27/200 (13%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFN------IVDTA 58 + I+G PN GKSTL N ++K+K+A++ + P TR+ IINGV + +DT Sbjct: 11 VTIIGRPNAGKSTLLNNILKQKIAIMSDKPQTTRN------IINGVYTDSDSQIVFIDTP 64 Query: 59 GIADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVS 118 GI K+ + M AI E+ ++ +I++ P D + + +++ +P ++ Sbjct: 65 GIHKPKH-KLGDYMMKLASSAIQESEIVYLIINASEKFGPGDQHLINIVKELKVPTFLLI 123 Query: 119 NKMDTRIAQR-----NFY-EIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPL 172 NK+D ++ FY E+Y DF EIV ISA + L S K + + +P Sbjct: 124 NKIDLITPEKLLEIITFYNELY--DFVEIVPISALKSINVDNLLSTTKKYLQPSFKMYPD 181 Query: 173 EMIENNKRNEESPKENITSE 192 ++I + SP+ + SE Sbjct: 182 DVITD------SPEYFVISE 195 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 30/123 (24%), Positives = 60/123 (48%), Gaps = 3/123 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 + ++GRPN GKSTL+N +L + + TR+ ++ + + I DT G+ KP Sbjct: 11 VTIIGRPNAGKSTLLNNILKQKIAIMSDKPQTTRNIINGVYTDSDSQIVFIDTPGIHKPK 70 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L +K + +++ E ++++A+ F D +++ V L +NK D Sbjct: 71 H---KLGDYMMKLASSAIQESEIVYLIINASEKFGPGDQHLINIVKELKVPTFLLINKID 127 Query: 326 MVS 328 +++ Sbjct: 128 LIT 130 >gi|325695846|gb|EGD37737.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis SK160] Length = 479 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 47/137 (34%), Positives = 84/137 (61%), Gaps = 7/137 (5%) Query: 207 AVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSR 266 A++GRPNVGKS+L+N LL ++ + G TRD + N K P+++ DTAG+R+ Sbjct: 249 AIIGRPNVGKSSLLNNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDD 308 Query: 267 ITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 + +EQ V++S ++++ + +++L+A+ P QD ++++ + + +VL LNK D+ Sbjct: 309 L---VEQIGVERSKKALQEADLVLLVLNASEPLTDQDKQLLE-ISQDSNRIVL-LNKTDL 363 Query: 327 VSDKLNLLQDLRTKAIK 343 +K+ L Q L T IK Sbjct: 364 -EEKIELDQ-LPTDVIK 378 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 86/161 (53%), Gaps = 14/161 (8%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+++ A+V + G TRD + I GV ++DTAGI + + Sbjct: 249 AIIGRPNVGKSSLLNNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDD 308 Query: 66 CSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +Q+ ++++ A+ EA L+L ++++ +T D + + N I++ NK D Sbjct: 309 --LVEQIGVERSKKALQEADLVLLVLNASEPLTDQDKQLLEISQDSN--RIVLLNKTD-- 362 Query: 125 IAQRNFYEIYSLDF--KEIVEISAEHDLGTSELHSVIFKIF 163 E LD ++++IS H+ ++ I ++F Sbjct: 363 -----LEEKIELDQLPTDVIKISVLHNQNIDKIEERINQLF 398 >gi|255282513|ref|ZP_05347068.1| GTP-binding protein Era [Bryantella formatexigens DSM 14469] gi|255266806|gb|EET60011.1| GTP-binding protein Era [Bryantella formatexigens DSM 14469] Length = 310 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 55/192 (28%), Positives = 94/192 (48%), Gaps = 11/192 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + ++G PNVGKSTL N L+ +K+A+ P TR+R+ + +DT GI K Sbjct: 19 VTLIGRPNVGKSTLMNHLIGQKIAITSRKPQTTRNRIQTVYTCDRGQIVFLDTPGIHRAK 78 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 N + + M + E ++E +IL+L++ I + I L+K P++++ NK+DT Sbjct: 79 N-KLGEYMVNVAERTLSEVDVILWLVEPTTFIGAGEQHIVQQLKKVKQPVVLIINKIDTV 137 Query: 124 -RIAQRNFYEIYS--LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + F + Y +F +I+ SA E+ VIFK P P+ E+ Sbjct: 138 QKTEVAKFIDAYRKIYNFADIIAASALRGQNLQEIIDVIFKYL----PYGPMFYDEDTIT 193 Query: 181 NEESPKENITSE 192 ++ P+ I +E Sbjct: 194 DQ--PQRQIVAE 203 Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 34/123 (27%), Positives = 57/123 (46%), Gaps = 3/123 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 + ++GRPNVGKSTL+N L+G +T + TR+ + + I DT G+ Sbjct: 19 VTLIGRPNVGKSTLMNHLIGQKIAITSRKPQTTRNRIQTVYTCDRGQIVFLDTPGIH--- 75 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 R L + V + +++ + + L++ T + IV + VVL +NK D Sbjct: 76 RAKNKLGEYMVNVAERTLSEVDVILWLVEPTTFIGAGEQHIVQQLKKVKQPVVLIINKID 135 Query: 326 MVS 328 V Sbjct: 136 TVQ 138 >gi|182416744|ref|ZP_02948141.1| tRNA modification GTPase TrmE [Clostridium butyricum 5521] gi|237669621|ref|ZP_04529599.1| tRNA modification GTPase TrmE [Clostridium butyricum E4 str. BoNT E BL5262] gi|182379401|gb|EDT76896.1| tRNA modification GTPase TrmE [Clostridium butyricum 5521] gi|237654855|gb|EEP52417.1| tRNA modification GTPase TrmE [Clostridium butyricum E4 str. BoNT E BL5262] Length = 460 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 43/129 (33%), Positives = 72/129 (55%), Gaps = 5/129 (3%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K I L I +VG+PNVGKS+L+N LL R + G TRD + N PI+I D Sbjct: 221 KIIRDGLNIVIVGKPNVGKSSLLNSLLREKRAIVTDIPGTTRDIIEEYINLDGIPIKITD 280 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R +++E+ V++S + + + I++LD + + +D I+D++ + + Sbjct: 281 TAGIRDTE---DTVEKIGVERSKEKIEEADLVILMLDTSRALDDEDRVIIDAINDKKY-- 335 Query: 318 VLALNKWDM 326 + LNK D+ Sbjct: 336 IALLNKVDL 344 Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 51/159 (32%), Positives = 82/159 (51%), Gaps = 6/159 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 I IVG PNVGKS+L N L+++K A+V + PG TRD + ++G+ I DTAGI D + Sbjct: 229 IVIVGKPNVGKSSLLNSLLREKRAIVTDIPGTTRDIIEEYINLDGIPIKITDTAGIRDTE 288 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + ++ K ++++ I EA L++ ++D+ + D I + K I + NK+D Sbjct: 289 D-TVEKIGVERSKEKIEEADLVILMLDTSRALDDEDRVIIDAINDK--KYIALLNKVDL- 344 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 + E +EISA+ G L I +F Sbjct: 345 --ECKLSEEVITSLNRTIEISAKTGFGIENLKEEIKNLF 381 >gi|300717986|ref|YP_003742789.1| GTP-binding protein [Erwinia billingiae Eb661] gi|299063822|emb|CAX60942.1| GTP-binding protein [Erwinia billingiae Eb661] Length = 301 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 53/180 (29%), Positives = 89/180 (49%), Gaps = 22/180 (12%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYG-------QAIINGVIFNIVDT 57 IAIVG PNVGKSTL N+L+ +K+++ P TR R+ G QAI VDT Sbjct: 11 IAIVGRPNVGKSTLLNQLLGQKISITSRKPQTTRHRIMGIHTEGPYQAI-------YVDT 63 Query: 58 AGIADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIV 117 G+ + +I + MN +I + L++F+++ T D + + LR +P+++ Sbjct: 64 PGLHMEEKRAINRLMNRAASSSIGDVELVIFVVEGTRW-TADDEMVVNKLRDNRVPVLLA 122 Query: 118 SNKMDTRIAQRNF------YEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHP 171 NK+D I ++ + +DF ++V ISAE + S++ K + + P Sbjct: 123 INKVDN-ITDKSILLPHMQFLSQQMDFMDVVPISAESGKNVDTIASIVRKRLPEAVHHFP 181 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 39/129 (30%), Positives = 66/129 (51%), Gaps = 3/129 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA+VGRPNVGKSTL+N+LLG +T + TR + + DT G+ Sbjct: 11 IAIVGRPNVGKSTLLNQLLGQKISITSRKPQTTRHRIMGIHTEGPYQAIYVDTPGLHMEE 70 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + ++ + + + S+ E I +++ T + D +V+ + + V+LA+NK D Sbjct: 71 K--RAINRLMNRAASSSIGDVELVIFVVEGT-RWTADDEMVVNKLRDNRVPVLLAINKVD 127 Query: 326 MVSDKLNLL 334 ++DK LL Sbjct: 128 NITDKSILL 136 >gi|266621740|ref|ZP_06114675.1| GTP-binding protein Era [Clostridium hathewayi DSM 13479] gi|288866563|gb|EFC98861.1| GTP-binding protein Era [Clostridium hathewayi DSM 13479] Length = 280 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 54/169 (31%), Positives = 84/169 (49%), Gaps = 20/169 (11%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLY-------GQAIINGVIFNIVDT 57 + ++G PNVGKSTL N L+ +K+A+ + P TR+R+ GQ +IF +DT Sbjct: 10 VTLIGRPNVGKSTLMNHLIGQKIAITSDKPQTTRNRIQTVYTDERGQ-----IIF--LDT 62 Query: 58 AGIADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIV 117 GI KN + + M E + E ++L+L++ I + I L+ P+I+V Sbjct: 63 PGIHKAKN-KLGEYMVSVAEHTLKEVDVVLWLVEPTTFIGAGERHIAEQLQNVKTPVILV 121 Query: 118 SNKMDTRIAQRNFYEIYS-----LDFKEIVEISAEHDLGTSELHSVIFK 161 NK+DT Q E + F EIV +SA D T + +I+K Sbjct: 122 INKIDTIKNQDEILEFIAAYKDVCSFAEIVPVSALKDKNTDLMLDLIYK 170 Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 33/130 (25%), Positives = 64/130 (49%), Gaps = 3/130 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 + ++GRPNVGKSTL+N L+G +T + TR+ + + + I DT G+ K Sbjct: 10 VTLIGRPNVGKSTLMNHLIGQKIAITSDKPQTTRNRIQTVYTDERGQIIFLDTPGIHKAK 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + V + +++ + + L++ T + I + + N V+L +NK D Sbjct: 70 N---KLGEYMVSVAEHTLKEVDVVLWLVEPTTFIGAGERHIAEQLQNVKTPVILVINKID 126 Query: 326 MVSDKLNLLQ 335 + ++ +L+ Sbjct: 127 TIKNQDEILE 136 >gi|325981701|ref|YP_004294103.1| GTP-binding protein Era [Nitrosomonas sp. AL212] gi|325531220|gb|ADZ25941.1| GTP-binding protein Era [Nitrosomonas sp. AL212] Length = 297 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 86/161 (53%), Gaps = 9/161 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKSTL N+LVK+K+++ TR R+ G F VDT G Sbjct: 12 VAIIGRPNVGKSTLLNKLVKQKISITSKKAQTTRFRINGILTDEQTQFVFVDTPGFQTHY 71 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + MN ++ E ++ILF+I++ + D A+ L N+PII+V NK+D + Sbjct: 72 ASVLNTAMNRVVTQSMREVNVILFVIEAMC-LDQRDIAVLKIL-PANVPIILVVNKID-K 128 Query: 125 IAQRN-----FYEIYS-LDFKEIVEISAEHDLGTSELHSVI 159 +A +N E+ + F +I+ +SA + + +EL + I Sbjct: 129 LADKNRLLPFLGEVAQVVKFSDIIPVSAMYKIQLAELLNTI 169 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 33/130 (25%), Positives = 67/130 (51%), Gaps = 6/130 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP- 264 +A++GRPNVGKSTL+N+L+ +T ++ TR ++ + DT G + Sbjct: 12 VAIIGRPNVGKSTLLNKLVKQKISITSKKAQTTRFRINGILTDEQTQFVFVDTPGFQTHY 71 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 + + + + V +SM+ V I+ + + +++D+ ++ + ++L +NK Sbjct: 72 ASVLNTAMNRVVTQSMREV----NVILFVIEAMCLDQRDIAVL-KILPANVPIILVVNKI 126 Query: 325 DMVSDKLNLL 334 D ++DK LL Sbjct: 127 DKLADKNRLL 136 >gi|309775110|ref|ZP_07670122.1| tRNA modification GTPase TrmE [Erysipelotrichaceae bacterium 3_1_53] gi|308917065|gb|EFP62793.1| tRNA modification GTPase TrmE [Erysipelotrichaceae bacterium 3_1_53] Length = 443 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 44/118 (37%), Positives = 69/118 (58%), Gaps = 5/118 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AIVG PNVGKS+L N L++++ A+V + G TRD + G + G+ N++DTAGI + + Sbjct: 223 AIVGKPNVGKSSLLNALLEEEKAIVTDIAGTTRDIVEGHIHLQGLTLNLIDTAGIRETSD 282 Query: 66 CSIAKQMNDQTEL-AINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + +Q+ Q L AI +A L++ ++D+ + D + R K IIV NK D Sbjct: 283 --VVEQIGIQRSLKAITDAQLVIVVLDNSRALDEQDRELLKLTRDK--TRIIVYNKTD 336 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 70/117 (59%), Gaps = 4/117 (3%) Query: 187 ENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISW 246 +NI +S + + + ++ A+VG+PNVGKS+L+N LL + + +G TRD V Sbjct: 204 QNILDRAQSG-QLLKEGIKTAIVGKPNVGKSSLLNALLEEEKAIVTDIAGTTRDIVEGHI 262 Query: 247 NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + + + + DTAG+R+ S + +EQ +++S++++ + IV+LD + ++QD Sbjct: 263 HLQGLTLNLIDTAGIRETSDV---VEQIGIQRSLKAITDAQLVIVVLDNSRALDEQD 316 >gi|299140501|ref|ZP_07033639.1| tRNA modification GTPase TrmE [Prevotella oris C735] gi|298577467|gb|EFI49335.1| tRNA modification GTPase TrmE [Prevotella oris C735] Length = 455 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 52/159 (32%), Positives = 85/159 (53%), Gaps = 10/159 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G NVGKSTL N L+ + A+V N G TRD + I GV F +DTAGI + K Sbjct: 225 VAIIGKTNVGKSTLLNCLLHEDKAIVSNIHGTTRDVIEDTTEIKGVTFRFIDTAGIRETK 284 Query: 65 NCSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + + +Q+ ++ I EA ++L+++D + Y KK +++V NKMD Sbjct: 285 D--VVEQLGIERAYKKIGEATIVLWVVDEQPTTEEYTEIQQLTAEKK---LLLVFNKMD- 338 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKI 162 ++ F I ++ ISA+H +EL + I+++ Sbjct: 339 ---RKEFKPITINSKLHVIYISAKHKQNMAELETAIYEV 374 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/93 (32%), Positives = 53/93 (56%), Gaps = 5/93 (5%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + K + +A++G+ NVGKSTL+N LL ++ + + G TRD + + K DTA Sbjct: 219 LKKGIPVAIIGKTNVGKSTLLNCLLHEDKAIVSNIHGTTRDVIEDTTEIKGVTFRFIDTA 278 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVL 292 G+R+ + +EQ ++++ + + E TIVL Sbjct: 279 GIRETKDV---VEQLGIERAYKKIG--EATIVL 306 >gi|295678212|ref|YP_003606736.1| tRNA modification GTPase TrmE [Burkholderia sp. CCGE1002] gi|295438055|gb|ADG17225.1| tRNA modification GTPase TrmE [Burkholderia sp. CCGE1002] Length = 464 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 50/160 (31%), Positives = 86/160 (53%), Gaps = 4/160 (2%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 ++ + G PNVGKS+L N L ++A+V G TRD++ I G+ +++DTAG+ D Sbjct: 228 SVVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQIEGIPLHVIDTAGLRDT 287 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD- 122 ++ + K ++T I A ++L L+D++AG+T D I + +P++ V NK D Sbjct: 288 ED-EVEKIGIERTWGEIERADVVLHLLDARAGMTTDDETIAGRF-PRGVPVVRVLNKTDL 345 Query: 123 TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKI 162 T +A L+ E V +SA+ G + L + +I Sbjct: 346 TGLAPATQALDADLELSE-VRLSAKQGDGVALLRDELLRI 384 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 53/221 (23%), Positives = 95/221 (42%), Gaps = 25/221 (11%) Query: 114 IIIVSNKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLE 173 +I S + R A R+ +S D +VE + ++ + + P E Sbjct: 142 LIEASTEAAARSAGRSLDGAFSRDIHALVE------------EVITLRMLVEATLDFPEE 189 Query: 174 MIENNKRNEESPK--------ENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLG 225 I+ + + K ++ SE + + + L + + G+PNVGKS+L+N L G Sbjct: 190 EIDFLEAADARGKLARIRERLAHVLSEARQGAL-LREGLSVVLAGQPNVGKSSLLNALAG 248 Query: 226 YNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRT 285 + +G TRD V+ + + P+ + DTAG+R + +E+ ++++ + Sbjct: 249 AELAIVTPIAGTTRDKVAQTIQIEGIPLHVIDTAGLRDTE---DEVEKIGIERTWGEIER 305 Query: 286 CETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 + + LLDA D I F G VV LNK D+ Sbjct: 306 ADVVLHLLDARAGMTTDDETIAGR-FPRGVPVVRVLNKTDL 345 >gi|187778474|ref|ZP_02994947.1| hypothetical protein CLOSPO_02068 [Clostridium sporogenes ATCC 15579] gi|226950371|ref|YP_002805462.1| GTP-binding protein Era [Clostridium botulinum A2 str. Kyoto] gi|254783292|sp|C1FVS6|ERA_CLOBJ RecName: Full=GTPase Era gi|187772099|gb|EDU35901.1| hypothetical protein CLOSPO_02068 [Clostridium sporogenes ATCC 15579] gi|226842790|gb|ACO85456.1| GTP-binding protein Era [Clostridium botulinum A2 str. Kyoto] Length = 296 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 55/183 (30%), Positives = 95/183 (51%), Gaps = 10/183 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + IVG PNVGKSTL N ++K+K+++V P TR+ + + VDT GI K Sbjct: 7 VTIVGRPNVGKSTLLNAIMKEKLSIVSCRPQTTRNNIQTILTEDNYQLVFVDTPGIHKPK 66 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD-- 122 + + + M A+ + L+LFLI+ D I L++ +P+ +V NK+D Sbjct: 67 H-KLGEYMVKSASDAMKDVDLVLFLINPDEKPGRGDLFIIEQLKEVKVPVFLVLNKIDEN 125 Query: 123 --TRIAQ--RNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEM-IEN 177 ++A+ + + E+ ++F+EI+ ISA L ++FK + +P +M I+ Sbjct: 126 PQEKVAETLKTYSEL--MEFQEIIPISALKGKNVDLLKELMFKYIPEGPQYYPEDMIIDQ 183 Query: 178 NKR 180 N+R Sbjct: 184 NER 186 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 33/120 (27%), Positives = 59/120 (49%), Gaps = 3/120 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 + +VGRPNVGKSTL+N ++ + + TR+++ N+ + DT G+ KP Sbjct: 7 VTIVGRPNVGKSTLLNAIMKEKLSIVSCRPQTTRNNIQTILTEDNYQLVFVDTPGIHKPK 66 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + VK + +++ + + L++ + DL I++ + V L LNK D Sbjct: 67 H---KLGEYMVKSASDAMKDVDLVLFLINPDEKPGRGDLFIIEQLKEVKVPVFLVLNKID 123 >gi|161899035|ref|YP_077161.2| tRNA modification GTPase TrmE [Symbiobacterium thermophilum IAM 14863] gi|205829222|sp|Q67J33|MNME_SYMTH RecName: Full=tRNA modification GTPase mnmE Length = 457 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 56/182 (30%), Positives = 92/182 (50%), Gaps = 13/182 (7%) Query: 193 GKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHP 252 G + + + + LR + GRPNVGKS+L+NRL+ NR + G TRD ++ P Sbjct: 211 GARTGRILREGLRAVLAGRPNVGKSSLLNRLVRENRAIVTPIPGTTRDVIAEWVELGGVP 270 Query: 253 IEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFN 312 +++FDTAG+R P+ + +E+ V ++ +++ +V++DA +D + S Sbjct: 271 VQLFDTAGLR-PT--DDPVERIGVARTHEALAQAHLVLVVVDAAAGLGPEDREWI-SQLP 326 Query: 313 TGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVL 372 G A V NK D+ + L LR +A+ P +G +S TGEG D L V Sbjct: 327 QGAARVGVANKIDL--NPAFELSALR-EALGGAPVVG------VSAETGEGFDALEAEVA 377 Query: 373 EI 374 + Sbjct: 378 RV 379 Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 50/156 (32%), Positives = 81/156 (51%), Gaps = 2/156 (1%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 + G PNVGKS+L NRLV++ A+V PG TRD + + GV + DTAG+ + Sbjct: 226 LAGRPNVGKSSLLNRLVRENRAIVTPIPGTTRDVIAEWVELGGVPVQLFDTAGLRPTDD- 284 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 + + +T A+ +AHL+L ++D+ AG+ P D S L + + V+NK+D A Sbjct: 285 PVERIGVARTHEALAQAHLVLVVVDAAAGLGPEDREWISQL-PQGAARVGVANKIDLNPA 343 Query: 127 QRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKI 162 +L +V +SAE G L + + ++ Sbjct: 344 FELSALREALGGAPVVGVSAETGEGFDALEAEVARV 379 >gi|332289237|ref|YP_004420089.1| GTP-binding protein Era [Gallibacterium anatis UMN179] gi|330432133|gb|AEC17192.1| GTP-binding protein Era [Gallibacterium anatis UMN179] Length = 307 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 52/180 (28%), Positives = 89/180 (49%), Gaps = 10/180 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N+++ +K+++ TR R+ G VDT G+ + Sbjct: 18 IAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIDTDGAYQAVYVDTPGLHIEE 77 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN AI + LI+F++D T D + + LR P+++ NK+D Sbjct: 78 KRAINRLMNRAASSAIGDVDLIIFVVDG-THWTDDDEMVLTKLRSAKAPVVLAINKIDNV 136 Query: 125 IAQ-------RNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 + + E +S FKE+V ISA+ +L +++ + ++ + P E + + Sbjct: 137 KNKDELLPFIQQLTEKFS--FKEVVPISAQRGNNVHQLKAIVRQSLRKGVHHFPEEYVTD 194 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 42/131 (32%), Positives = 67/131 (51%), Gaps = 7/131 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS-VSISWNWKNHPIEIFDTAGMR-K 263 IA+VGRPNVGKSTL+N++LG +T ++ TR V I + + + DT G+ + Sbjct: 18 IAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIDTDGAYQAVYV-DTPGLHIE 76 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 R L + ++ V + I ++D T + D ++ + + VVLA+NK Sbjct: 77 EKRAINRLMNRAASSAIGDV---DLIIFVVDGT-HWTDDDEMVLTKLRSAKAPVVLAINK 132 Query: 324 WDMVSDKLNLL 334 D V +K LL Sbjct: 133 IDNVKNKDELL 143 >gi|167767681|ref|ZP_02439734.1| hypothetical protein CLOSS21_02216 [Clostridium sp. SS2/1] gi|167710698|gb|EDS21277.1| hypothetical protein CLOSS21_02216 [Clostridium sp. SS2/1] gi|291560815|emb|CBL39615.1| GTP-binding protein Era [butyrate-producing bacterium SSC/2] Length = 301 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 54/170 (31%), Positives = 87/170 (51%), Gaps = 15/170 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIING----VIFNIVDTAGI 60 + +G PNVGKSTL NRL+ +K+A+ + P TR+R+ Q + +IF +DT GI Sbjct: 10 VTFIGRPNVGKSTLMNRLIGQKIAITSSKPQTTRNRI--QTVYTDERGQIIF--LDTPGI 65 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 KN + M E +NE ++L+L++ I + I L K PII+V NK Sbjct: 66 NKAKN-KLGNYMLQVAERTLNEVDVVLWLVEPSTFIGGGEKYIIEQLSKIKTPIILVINK 124 Query: 121 MDTRIAQRNFYEIYS-----LDFKEIVEISAEHDLGTSELHSVIFKIFKQ 165 +DT + +++ E +F EI+ +SA T ++ I+K + Sbjct: 125 IDT-VEEKDILEAIDTYKDVCEFAEIIPVSALKGKNTDDVIDSIYKYLDE 173 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/166 (24%), Positives = 84/166 (50%), Gaps = 8/166 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 + +GRPNVGKSTL+NRL+G +T S+ TR+ + + + I DT G+ K Sbjct: 10 VTFIGRPNVGKSTLMNRLIGQKIAITSSKPQTTRNRIQTVYTDERGQIIFLDTPGINKAK 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L ++ + +++ + + L++ + + I++ + ++L +NK D Sbjct: 70 N---KLGNYMLQVAERTLNEVDVVLWLVEPSTFIGGGEKYIIEQLSKIKTPIILVINKID 126 Query: 326 MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSV 371 V +K ++L+ + T K++ + +I +S G+ DD++ S+ Sbjct: 127 TVEEK-DILEAIDT--YKDVCEFAEII--PVSALKGKNTDDVIDSI 167 >gi|42519246|ref|NP_965176.1| GTP-binding protein Era [Lactobacillus johnsonii NCC 533] gi|41583534|gb|AAS09142.1| GTP-binding protein era-like protein [Lactobacillus johnsonii NCC 533] gi|329667244|gb|AEB93192.1| GTP-binding protein era protein [Lactobacillus johnsonii DPC 6026] Length = 303 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 81/161 (50%), Gaps = 6/161 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A++G PNVGKSTL N LV +K+A++ P TR+++ G + +DT GI K Sbjct: 13 VALIGRPNVGKSTLLNYLVGQKVAIMSPQPQTTRNKISGIYTDDQEQIVFIDTPGIHKPK 72 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N + M+ + A++E ++LF+++ + D I L+K P+ +V NK+D Sbjct: 73 N-KLDDFMDKSSYSALDEVDVVLFMVEPEPA-GKGDQYIAELLKKIKKPVFLVINKIDKV 130 Query: 125 IAQRNFYEIYSL----DFKEIVEISAEHDLGTSELHSVIFK 161 I S DF EIV ISA SEL I K Sbjct: 131 HPDELLSIIDSYKNLGDFAEIVPISASQGNNVSELIKTIAK 171 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 76/167 (45%), Gaps = 11/167 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKSTL+N L+G + Q TR+ +S + I DT G+ KP Sbjct: 13 VALIGRPNVGKSTLLNYLVGQKVAIMSPQPQTTRNKISGIYTDDQEQIVFIDTPGIHKPK 72 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + K+ ++ V ++ + P K D I + + V L +NK D Sbjct: 73 NKLDDFMDKSSYSALDEV----DVVLFMVEPEPAGKGDQYIAELLKKIKKPVFLVINKID 128 Query: 326 MVS-DKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSV 371 V D+L + D + KNL +I IS G + +L+ ++ Sbjct: 129 KVHPDELLSIID----SYKNLGDFAEIV--PISASQGNNVSELIKTI 169 >gi|160947545|ref|ZP_02094712.1| hypothetical protein PEPMIC_01480 [Parvimonas micra ATCC 33270] gi|158446679|gb|EDP23674.1| hypothetical protein PEPMIC_01480 [Parvimonas micra ATCC 33270] Length = 298 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 54/151 (35%), Positives = 85/151 (56%), Gaps = 11/151 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIV--DTAGIAD 62 + IVG NVGKSTL NR++ +K++++ + P TR L + I N + IV DT GI + Sbjct: 9 VTIVGRSNVGKSTLLNRIIGEKISIISSKPQTTRANL--KLIYNSLDSQIVFLDTPGIQN 66 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 KN + + M ++ ++ + LIL+++D I D+ I LRK N+P I V NK+D Sbjct: 67 PKN-KLGEFMLKESRSSLRDVDLILYMVDVNFEIGELDNLIIDILRKINLPKICVINKID 125 Query: 123 TRIAQR-----NFYEIYSLDFKEIVEISAEH 148 T ++ + YE L F++I+ ISA Sbjct: 126 TLNSEELSKLVSKYEGMEL-FEKIIPISASE 155 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 61/120 (50%), Gaps = 3/120 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 + +VGR NVGKSTL+NR++G + S+ TR ++ + +N + I DT G++ P Sbjct: 9 VTIVGRSNVGKSTLLNRIIGEKISIISSKPQTTRANLKLIYNSLDSQIVFLDTPGIQNPK 68 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + +K+S S+R + + ++D + D I+D + + +NK D Sbjct: 69 N---KLGEFMLKESRSSLRDVDLILYMVDVNFEIGELDNLIIDILRKINLPKICVINKID 125 >gi|160900692|ref|YP_001566274.1| GTP-binding protein Era [Delftia acidovorans SPH-1] gi|160366276|gb|ABX37889.1| GTP-binding protein Era [Delftia acidovorans SPH-1] Length = 344 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 44/119 (36%), Positives = 64/119 (53%), Gaps = 2/119 (1%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N LV +K+++ TR R+ G F VDT G Sbjct: 54 IAIVGKPNVGKSTLMNALVGQKISITSRKAQTTRHRITGIRSRAATQFIFVDTPGFQTKH 113 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + ++ K +N AI + LILF++++ T D + S K IP ++++NK+DT Sbjct: 114 STALNKSLNKTVMGAIGDVDLILFVVEA-GQFTLADAKVLSLF-KPGIPTLLIANKLDT 170 Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust. Identities = 36/134 (26%), Positives = 68/134 (50%), Gaps = 4/134 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA+VG+PNVGKSTL+N L+G +T ++ TR ++ + DT G + + Sbjct: 54 IAIVGKPNVGKSTLMNALVGQKISITSRKAQTTRHRITGIRSRAATQFIFVDTPGFQ--T 111 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + + +L + K M ++ + + +++A F D +++ S+F G +L NK D Sbjct: 112 KHSTALNKSLNKTVMGAIGDVDLILFVVEAG-QFTLADAKVL-SLFKPGIPTLLIANKLD 169 Query: 326 MVSDKLNLLQDLRT 339 V + + L++ Sbjct: 170 TVGRRAEIAPWLKS 183 >gi|322391875|ref|ZP_08065340.1| thiophene and furan oxidation protein ThdF [Streptococcus peroris ATCC 700780] gi|321145355|gb|EFX40751.1| thiophene and furan oxidation protein ThdF [Streptococcus peroris ATCC 700780] Length = 457 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 74/120 (61%), Gaps = 5/120 (4%) Query: 207 AVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSR 266 A++GRPNVGKS+L+N LL ++ + +G TRD + N P+++ DTAG+R+ Sbjct: 227 AIIGRPNVGKSSLLNSLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDD 286 Query: 267 ITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 I +EQ V++S ++++ + +++L+A+ P QD ++++ +T ++ LNK D+ Sbjct: 287 I---VEQIGVERSKKALKEADLVLLVLNASEPLTAQDRQLLEISQDTNR--IILLNKTDL 341 Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 42/118 (35%), Positives = 70/118 (59%), Gaps = 5/118 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+++ A+V + G TRD + INGV ++DTAGI + + Sbjct: 227 AIIGRPNVGKSSLLNSLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDD 286 Query: 66 CSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 I +Q+ ++++ A+ EA L+L ++++ +T D + + N II+ NK D Sbjct: 287 --IVEQIGVERSKKALKEADLVLLVLNASEPLTAQDRQLLEISQDTN--RIILLNKTD 340 >gi|306829480|ref|ZP_07462670.1| tRNA modification GTPase TrmE [Streptococcus mitis ATCC 6249] gi|304428566|gb|EFM31656.1| tRNA modification GTPase TrmE [Streptococcus mitis ATCC 6249] Length = 457 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 74/120 (61%), Gaps = 5/120 (4%) Query: 207 AVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSR 266 A++GRPNVGKS+L+N LL ++ + +G TRD + N P+++ DTAG+R+ Sbjct: 227 AIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDD 286 Query: 267 ITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 I +EQ V++S ++++ + +++L+A+ P QD ++++ +T ++ LNK D+ Sbjct: 287 I---VEQIGVERSRKALKEADLVLLVLNASEPLTAQDRQLLEISQDTNR--IILLNKTDL 341 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 42/118 (35%), Positives = 69/118 (58%), Gaps = 5/118 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+++ A+V + G TRD + INGV ++DTAGI + + Sbjct: 227 AIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDD 286 Query: 66 CSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 I +Q+ +++ A+ EA L+L ++++ +T D + + N II+ NK D Sbjct: 287 --IVEQIGVERSRKALKEADLVLLVLNASEPLTAQDRQLLEISQDTN--RIILLNKTD 340 >gi|293365349|ref|ZP_06612066.1| thiophene and furan oxidation protein ThdF [Streptococcus oralis ATCC 35037] gi|307703891|ref|ZP_07640832.1| tRNA modification GTPase TrmE [Streptococcus oralis ATCC 35037] gi|291316799|gb|EFE57235.1| thiophene and furan oxidation protein ThdF [Streptococcus oralis ATCC 35037] gi|307622726|gb|EFO01722.1| tRNA modification GTPase TrmE [Streptococcus oralis ATCC 35037] Length = 457 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 74/120 (61%), Gaps = 5/120 (4%) Query: 207 AVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSR 266 A++GRPNVGKS+L+N LL ++ + +G TRD + N P+++ DTAG+R+ Sbjct: 227 AIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDD 286 Query: 267 ITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 I +EQ V++S ++++ + +++L+A+ P QD ++++ +T ++ LNK D+ Sbjct: 287 I---VEQIGVERSRKALKEADLVLLVLNASEPLTAQDRQLLEISQDTNR--IILLNKTDL 341 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 43/122 (35%), Positives = 71/122 (58%), Gaps = 5/122 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+++ A+V + G TRD + INGV ++DTAGI + + Sbjct: 227 AIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDD 286 Query: 66 CSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I +Q+ +++ A+ EA L+L ++++ +T D + + N II+ NK D + Sbjct: 287 --IVEQIGVERSRKALKEADLVLLVLNASEPLTAQDRQLLEISQDTN--RIILLNKTDLQ 342 Query: 125 IA 126 A Sbjct: 343 EA 344 >gi|225856671|ref|YP_002738182.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae P1031] gi|225725175|gb|ACO21027.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae P1031] Length = 457 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 74/120 (61%), Gaps = 5/120 (4%) Query: 207 AVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSR 266 A++GRPNVGKS+L+N LL ++ + +G TRD + N P+++ DTAG+R+ Sbjct: 227 AIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDD 286 Query: 267 ITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 I +EQ V++S ++++ + +++L+A+ P QD ++++ +T ++ LNK D+ Sbjct: 287 I---VEQIGVERSKKALKEADLVLLVLNASEPLTAQDRQLLEISQDTNR--IILLNKTDL 341 Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 42/118 (35%), Positives = 70/118 (59%), Gaps = 5/118 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+++ A+V + G TRD + INGV ++DTAGI + + Sbjct: 227 AIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDD 286 Query: 66 CSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 I +Q+ ++++ A+ EA L+L ++++ +T D + + N II+ NK D Sbjct: 287 --IVEQIGVERSKKALKEADLVLLVLNASEPLTAQDRQLLEISQDTN--RIILLNKTD 340 >gi|225858807|ref|YP_002740317.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 70585] gi|225720545|gb|ACO16399.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 70585] Length = 457 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 75/120 (62%), Gaps = 5/120 (4%) Query: 207 AVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSR 266 A++GRPNVGKS+L+N LL ++ + +G TRD + N P+++ DTAG+R+ Sbjct: 227 AIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETD- 285 Query: 267 ITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 +++EQ V++S ++++ + +++L+A+ P QD ++++ +T ++ LNK D+ Sbjct: 286 --DTVEQIGVERSKKALKEADLVLLVLNASEPLTAQDRQLLEISQDTNR--IILLNKTDL 341 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 40/117 (34%), Positives = 69/117 (58%), Gaps = 3/117 (2%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+++ A+V + G TRD + INGV ++DTAGI + + Sbjct: 227 AIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDD 286 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 ++ + ++++ A+ EA L+L ++++ +T D + + N II+ NK D Sbjct: 287 -TVEQIGVERSKKALKEADLVLLVLNASEPLTAQDRQLLEISQDTN--RIILLNKTD 340 >gi|213585347|ref|ZP_03367173.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 181 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 53/179 (29%), Positives = 88/179 (49%), Gaps = 20/179 (11%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYG-------QAIINGVIFNIVDT 57 IAIVG PNVGKSTL N+L+ +K+++ TR R+ G QAI VDT Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGPYQAI-------YVDT 63 Query: 58 AGIADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIV 117 G+ + +I + MN +I + L++F+++ TP D + + LR P+I+ Sbjct: 64 PGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRW-TPDDEMVLNKLRDGKAPVILA 122 Query: 118 SNKMDTRIAQRNF-----YEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHP 171 NK+D + + + ++F +IV ISAE + + S++ K + + P Sbjct: 123 VNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGMNVDTIASIVRKHLPEAIHHFP 181 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 51/161 (31%), Positives = 82/161 (50%), Gaps = 9/161 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS-VSISWNWKNHPIEIFDTAGMRKP 264 IA+VGRPNVGKSTL+N+LLG +T ++ TR V I I + DT G+ Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGPYQAIYV-DTPGLHME 69 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 + ++ + K + S+ E I +++ T + D +++ + + V+LA+NK Sbjct: 70 EK--RAINRLMNKAASSSIGDVELVIFVVEGT-RWTPDDEMVLNKLRDGKAPVILAVNKV 126 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLD 365 D V +K +LL L+ A Q+ + I IS TG +D Sbjct: 127 DNVQEKADLLPHLQFLA----SQMNFLDIVPISAETGMNVD 163 >gi|168487704|ref|ZP_02712212.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae CDC1087-00] gi|169834150|ref|YP_001694460.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae Hungary19A-6] gi|225861000|ref|YP_002742509.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae Taiwan19F-14] gi|298230463|ref|ZP_06964144.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255333|ref|ZP_06978919.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502963|ref|YP_003724903.1| tRNA modification GTP-binding protein TrmE [Streptococcus pneumoniae TCH8431/19A] gi|205415808|sp|B1IBH5|MNME_STRPI RecName: Full=tRNA modification GTPase mnmE gi|168996652|gb|ACA37264.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae Hungary19A-6] gi|183569534|gb|EDT90062.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae CDC1087-00] gi|225727603|gb|ACO23454.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae Taiwan19F-14] gi|298238558|gb|ADI69689.1| tRNA modification GTP-binding protein TrmE [Streptococcus pneumoniae TCH8431/19A] gi|327389399|gb|EGE87744.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA04375] gi|332200613|gb|EGJ14685.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA41317] gi|332201488|gb|EGJ15558.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA47368] Length = 457 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 74/120 (61%), Gaps = 5/120 (4%) Query: 207 AVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSR 266 A++GRPNVGKS+L+N LL ++ + +G TRD + N P+++ DTAG+R+ Sbjct: 227 AIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDD 286 Query: 267 ITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 I +EQ V++S ++++ + +++L+A+ P QD ++++ +T ++ LNK D+ Sbjct: 287 I---VEQIGVERSKKALKEADLVLLVLNASEPLTAQDRQLLEISQDTNR--IILLNKTDL 341 Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 42/118 (35%), Positives = 70/118 (59%), Gaps = 5/118 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+++ A+V + G TRD + INGV ++DTAGI + + Sbjct: 227 AIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDD 286 Query: 66 CSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 I +Q+ ++++ A+ EA L+L ++++ +T D + + N II+ NK D Sbjct: 287 --IVEQIGVERSKKALKEADLVLLVLNASEPLTAQDRQLLEISQDTN--RIILLNKTD 340 >gi|119952977|ref|YP_945186.1| tRNA modification GTPase TrmE [Borrelia turicatae 91E135] gi|254811472|sp|A1QYX4|MNME_BORT9 RecName: Full=tRNA modification GTPase mnmE gi|119861748|gb|AAX17516.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase [Borrelia turicatae 91E135] Length = 464 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 55/163 (33%), Positives = 92/163 (56%), Gaps = 10/163 (6%) Query: 3 YTIAIV--GAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 Y IA+V G+ NVGKS+LFN L+K+ A+V ++ G TRD + +G++FN+ DTAG+ Sbjct: 221 YGIALVLAGSVNVGKSSLFNLLLKEDRAIVSSYAGTTRDYIQASFEFDGILFNVFDTAGL 280 Query: 61 ADGKNCSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYD-HAITSFLRKKNIPIIIVS 118 + + +Q+ ++ I EA L+L++ID A +T D I S+ K + +I V Sbjct: 281 RETTD--FVEQLGIVKSNSLIKEASLVLYVIDLSARLTNDDLKFIDSY--KGHSKVIFVL 336 Query: 119 NKMDTRIAQR--NFYEIYSLDFKEIVEISAEHDLGTSELHSVI 159 NKMD ++ F+ +++ +V+IS + G L+ I Sbjct: 337 NKMDLEPNRQTVEFFNSGNINSSNLVKISTKTLFGIDSLYDKI 379 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 70/132 (53%), Gaps = 6/132 (4%) Query: 196 SVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEI 255 + + + + + + G NVGKS+L N LL +R + S +G TRD + S+ + + Sbjct: 215 TARKLDYGIALVLAGSVNVGKSSLFNLLLKEDRAIVSSYAGTTRDYIQASFEFDGILFNV 274 Query: 256 FDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGH 315 FDTAG+R+ T+ +EQ + KS ++ + ++D + DL+ +DS GH Sbjct: 275 FDTAGLRET---TDFVEQLGIVKSNSLIKEASLVLYVIDLSARLTNDDLKFIDSY--KGH 329 Query: 316 A-VVLALNKWDM 326 + V+ LNK D+ Sbjct: 330 SKVIFVLNKMDL 341 >gi|148998838|ref|ZP_01826274.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP11-BS70] gi|168576255|ref|ZP_02722149.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae MLV-016] gi|307067807|ref|YP_003876773.1| putative GTPase [Streptococcus pneumoniae AP200] gi|147755265|gb|EDK62316.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP11-BS70] gi|183577997|gb|EDT98525.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae MLV-016] gi|306409344|gb|ADM84771.1| Predicted GTPase [Streptococcus pneumoniae AP200] Length = 457 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 74/120 (61%), Gaps = 5/120 (4%) Query: 207 AVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSR 266 A++GRPNVGKS+L+N LL ++ + +G TRD + N P+++ DTAG+R+ Sbjct: 227 AIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDD 286 Query: 267 ITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 I +EQ V++S ++++ + +++L+A+ P QD ++++ +T ++ LNK D+ Sbjct: 287 I---VEQIGVERSKKALKEADLVLLVLNASEPLTAQDRQLLEISQDTNR--IILLNKTDL 341 Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 42/118 (35%), Positives = 70/118 (59%), Gaps = 5/118 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+++ A+V + G TRD + INGV ++DTAGI + + Sbjct: 227 AIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDD 286 Query: 66 CSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 I +Q+ ++++ A+ EA L+L ++++ +T D + + N II+ NK D Sbjct: 287 --IVEQIGVERSKKALKEADLVLLVLNASEPLTAQDRQLLEISQDTN--RIILLNKTD 340 >gi|160902854|ref|YP_001568435.1| tRNA modification GTPase TrmE [Petrotoga mobilis SJ95] gi|205415791|sp|A9BHZ7|MNME_PETMO RecName: Full=tRNA modification GTPase mnmE gi|160360498|gb|ABX32112.1| tRNA modification GTPase TrmE [Petrotoga mobilis SJ95] Length = 452 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 41/123 (33%), Positives = 70/123 (56%), Gaps = 4/123 (3%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 +R +VG+PN GKSTL+N LL +R + G TRD++ + N I + DTAG+R Sbjct: 214 VRTVIVGKPNSGKSTLLNALLRKDRAIVTDIPGTTRDTIEENLNINGIYIRLIDTAGIRY 273 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGH-AVVLALN 322 ++LE+ +++++ S++ + +LD T PF ++D I + + G V++ LN Sbjct: 274 TE---DTLERVGIERTINSIKNSHLILFVLDGTTPFTQEDELIYNKLNELGDKTVIIILN 330 Query: 323 KWD 325 K D Sbjct: 331 KSD 333 Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 54/163 (33%), Positives = 90/163 (55%), Gaps = 4/163 (2%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 IVG PN GKSTL N L++K A+V + PG TRD + ING+ ++DTAGI ++ Sbjct: 217 VIVGKPNSGKSTLLNALLRKDRAIVTDIPGTTRDTIEENLNINGIYIRLIDTAGIRYTED 276 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRK-KNIPIIIVSNKMDT- 123 ++ + ++T +I +HLILF++D T D I + L + + +II+ NK D+ Sbjct: 277 -TLERVGIERTINSIKNSHLILFVLDGTTPFTQEDELIYNKLNELGDKTVIIILNKSDSP 335 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQK 166 + N+ + + + V ISA++ L + I++ F +K Sbjct: 336 NFTENNYLSLKQKNPNDFVIISAKNG-AIKNLENKIYEKFFEK 377 >gi|116516848|ref|YP_816380.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae D39] gi|161410748|ref|NP_358514.2| tRNA modification GTPase TrmE [Streptococcus pneumoniae R6] gi|168491911|ref|ZP_02716054.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae CDC0288-04] gi|32171825|sp|Q8DPZ8|MNME_STRR6 RecName: Full=tRNA modification GTPase mnmE gi|122278734|sp|Q04KR8|MNME_STRP2 RecName: Full=tRNA modification GTPase mnmE gi|116077424|gb|ABJ55144.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae D39] gi|183573804|gb|EDT94332.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae CDC0288-04] Length = 457 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 74/120 (61%), Gaps = 5/120 (4%) Query: 207 AVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSR 266 A++GRPNVGKS+L+N LL ++ + +G TRD + N P+++ DTAG+R+ Sbjct: 227 AIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDD 286 Query: 267 ITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 I +EQ V++S ++++ + +++L+A+ P QD ++++ +T ++ LNK D+ Sbjct: 287 I---VEQIGVERSKKALKEADLVLLVLNASEPLTAQDRQLLEISQDTNR--IILLNKTDL 341 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 42/118 (35%), Positives = 70/118 (59%), Gaps = 5/118 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+++ A+V + G TRD + INGV ++DTAGI + + Sbjct: 227 AIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDD 286 Query: 66 CSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 I +Q+ ++++ A+ EA L+L ++++ +T D + + N II+ NK D Sbjct: 287 --IVEQIGVERSKKALKEADLVLLVLNASEPLTAQDRQLLEISQDTN--RIILLNKTD 340 >gi|114568076|ref|YP_755230.1| GTPase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|122317083|sp|Q0ATU5|MNME_SYNWW RecName: Full=tRNA modification GTPase mnmE gi|114339011|gb|ABI69859.1| tRNA modification GTPase trmE [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 459 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 47/128 (36%), Positives = 75/128 (58%), Gaps = 5/128 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI G PNVGKS+L N L++K+ A+V + PG TRD + I G+ + DTAGI + Sbjct: 224 VAICGKPNVGKSSLLNALLRKEKAIVTSIPGTTRDIIEDYINIRGIPVKLKDTAGIRSTE 283 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + + ++++ I+EA L+LF++D GI D I + KKN I++ NK D Sbjct: 284 DL-VERIGIERSQEVISEADLVLFILDVGTGIDQEDRKIYEKIEKKN--KIVLVNKED-- 338 Query: 125 IAQRNFYE 132 + ++N E Sbjct: 339 LEEKNISE 346 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 66/121 (54%), Gaps = 5/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+ G+PNVGKS+L+N LL + + S G TRD + N + P+++ DTAG+R Sbjct: 224 VAICGKPNVGKSSLLNALLRKEKAIVTSIPGTTRDIIEDYINIRGIPVKLKDTAGIRSTE 283 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + E + +++S + + + + +LD +++D +I + + V+ +NK D Sbjct: 284 DLVERI---GIERSQEVISEADLVLFILDVGTGIDQEDRKIYEKIEKKNKIVL--VNKED 338 Query: 326 M 326 + Sbjct: 339 L 339 >gi|307704774|ref|ZP_07641670.1| tRNA modification GTPase TrmE [Streptococcus mitis SK597] gi|307621683|gb|EFO00724.1| tRNA modification GTPase TrmE [Streptococcus mitis SK597] Length = 457 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 74/120 (61%), Gaps = 5/120 (4%) Query: 207 AVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSR 266 A++GRPNVGKS+L+N LL ++ + +G TRD + N P+++ DTAG+R+ Sbjct: 227 AIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDD 286 Query: 267 ITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 I +EQ V++S ++++ + +++L+A+ P QD ++++ +T ++ LNK D+ Sbjct: 287 I---VEQIGVERSKKALKEADLVLLVLNASEPLTSQDRQLLEISQDTNR--IILLNKTDL 341 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 42/118 (35%), Positives = 70/118 (59%), Gaps = 5/118 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+++ A+V + G TRD + INGV ++DTAGI + + Sbjct: 227 AIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDD 286 Query: 66 CSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 I +Q+ ++++ A+ EA L+L ++++ +T D + + N II+ NK D Sbjct: 287 --IVEQIGVERSKKALKEADLVLLVLNASEPLTSQDRQLLEISQDTN--RIILLNKTD 340 >gi|161502268|ref|YP_001569380.1| GTP-binding protein Era [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|189037665|sp|A9MGX7|ERA_SALAR RecName: Full=GTPase Era gi|160863615|gb|ABX20238.1| hypothetical protein SARI_00298 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 301 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 54/185 (29%), Positives = 90/185 (48%), Gaps = 20/185 (10%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYG-------QAIINGVIFNIVDT 57 IAIVG PNVGKSTL N+L+ +K+++ TR R+ G QAI VDT Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGPYQAI-------YVDT 63 Query: 58 AGIADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIV 117 G+ + +I + MN +I + L++F+++ TP D + + LR P+I+ Sbjct: 64 PGLHIEEKRAINRLMNKAASSSIGDVELVIFVVEGTRW-TPDDEMVLNKLRDGKAPVILA 122 Query: 118 SNKMDTRIAQRNF-----YEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPL 172 NK+D + + + + F +IV ISAE + + S++ K + + P Sbjct: 123 VNKVDNVQEKADLLPHLQFLASQMSFLDIVPISAETGMNVDTIASIVRKHLPEATHHFPE 182 Query: 173 EMIEN 177 + I + Sbjct: 183 DYITD 187 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 54/162 (33%), Positives = 81/162 (50%), Gaps = 11/162 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS-VSISWNWKNHPIEIFDTAGMR-K 263 IA+VGRPNVGKSTL+N+LLG +T ++ TR V I I + DT G+ + Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGPYQAIYV-DTPGLHIE 69 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 R L K S+ V E I +++ T + D +++ + + V+LA+NK Sbjct: 70 EKRAINRLMNKAASSSIGDV---ELVIFVVEGT-RWTPDDEMVLNKLRDGKAPVILAVNK 125 Query: 324 WDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLD 365 D V +K +LL L+ A Q+ + I IS TG +D Sbjct: 126 VDNVQEKADLLPHLQFLA----SQMSFLDIVPISAETGMNVD 163 >gi|148984971|ref|ZP_01818214.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP3-BS71] gi|182683965|ref|YP_001835712.1| tRNA modification GTPase [Streptococcus pneumoniae CGSP14] gi|147922669|gb|EDK73786.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP3-BS71] gi|182629299|gb|ACB90247.1| tRNA modification GTPase [Streptococcus pneumoniae CGSP14] Length = 479 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 74/120 (61%), Gaps = 5/120 (4%) Query: 207 AVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSR 266 A++GRPNVGKS+L+N LL ++ + +G TRD + N P+++ DTAG+R+ Sbjct: 249 AIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDD 308 Query: 267 ITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 I +EQ V++S ++++ + +++L+A+ P QD ++++ +T ++ LNK D+ Sbjct: 309 I---VEQIGVERSKKALKEADLVLLVLNASEPLTAQDRQLLEISQDTNR--IILLNKTDL 363 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 42/118 (35%), Positives = 70/118 (59%), Gaps = 5/118 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+++ A+V + G TRD + INGV ++DTAGI + + Sbjct: 249 AIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDD 308 Query: 66 CSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 I +Q+ ++++ A+ EA L+L ++++ +T D + + N II+ NK D Sbjct: 309 --IVEQIGVERSKKALKEADLVLLVLNASEPLTAQDRQLLEISQDTN--RIILLNKTD 362 >gi|148269225|ref|YP_001243685.1| GTP-binding protein Era [Thermotoga petrophila RKU-1] gi|189037683|sp|A5IIT6|ERA_THEP1 RecName: Full=GTPase Era gi|147734769|gb|ABQ46109.1| GTP-binding protein Era [Thermotoga petrophila RKU-1] Length = 300 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 45/169 (26%), Positives = 88/169 (52%), Gaps = 9/169 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+ G+PNVGKST IN ++G ++ + TR+ ++ + ++ I DT G+ KP Sbjct: 8 VALAGKPNVGKSTFINVVMGRKVVIVSDKPQTTRNRINCIYTDRDSQIIFVDTPGIHKP- 66 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + VK ++Q+++ + + +LDA F K D + V +G ++A+NK D Sbjct: 67 --LHRLGEYMVKAAVQALKGVDLILFMLDAADGFTKTDEHVAKIVSESGTKTIIAVNKID 124 Query: 326 MVS-DKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 + +K + L ++N+ + ++ IS GEG+ +++ + E Sbjct: 125 VAGEEKAKAVGQLAKSMVENV-----VSVHYISALKGEGVFEVLEKIKE 168 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 57/119 (47%), Gaps = 1/119 (0%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+ G PNVGKST N ++ +K+ +V + P TR+R+ VDT GI Sbjct: 8 VALAGKPNVGKSTFINVVMGRKVVIVSDKPQTTRNRINCIYTDRDSQIIFVDTPGIHKPL 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + + + M A+ LILF++D+ G T D + + + II NK+D Sbjct: 68 H-RLGEYMVKAAVQALKGVDLILFMLDAADGFTKTDEHVAKIVSESGTKTIIAVNKIDV 125 >gi|309800286|ref|ZP_07694459.1| tRNA modification GTPase TrmE [Streptococcus infantis SK1302] gi|308116070|gb|EFO53573.1| tRNA modification GTPase TrmE [Streptococcus infantis SK1302] Length = 457 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 74/120 (61%), Gaps = 5/120 (4%) Query: 207 AVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSR 266 A++GRPNVGKS+L+N LL ++ + +G TRD + N P+++ DTAG+R+ Sbjct: 227 AIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDD 286 Query: 267 ITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 I +EQ V++S ++++ + +++L+A+ P QD ++++ +T ++ LNK D+ Sbjct: 287 I---VEQIGVERSKKALKEADLVLLVLNASEPLTAQDRQLLEISQDTNR--IILLNKTDL 341 Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 42/118 (35%), Positives = 70/118 (59%), Gaps = 5/118 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+++ A+V + G TRD + INGV ++DTAGI + + Sbjct: 227 AIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDD 286 Query: 66 CSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 I +Q+ ++++ A+ EA L+L ++++ +T D + + N II+ NK D Sbjct: 287 --IVEQIGVERSKKALKEADLVLLVLNASEPLTAQDRQLLEISQDTN--RIILLNKTD 340 >gi|253702732|ref|YP_003023921.1| tRNA modification GTPase TrmE [Geobacter sp. M21] gi|251777582|gb|ACT20163.1| tRNA modification GTPase TrmE [Geobacter sp. M21] Length = 455 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 59/184 (32%), Positives = 87/184 (47%), Gaps = 23/184 (12%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 ++ I G PNVGKS+L N L+K+K A+V + PG TRD + ING+ ++DTAGI Sbjct: 222 SVVIAGKPNVGKSSLLNTLLKEKRAIVTSVPGTTRDLIEEVVNINGLPVKLLDTAGI--- 278 Query: 64 KNCSIAKQMNDQTELA--------INEAHLILFLIDSKAGITPYDHAITSFLRKKNIPII 115 ++ +DQ E I +A L+LF+ID + D I + K+ I Sbjct: 279 ------RESDDQVEQEGVRLSLDRIPKADLVLFVIDGSSVFGVEDATILQAVGSKS--CI 330 Query: 116 IVSNKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 +V NK D +A E+ S F +V IS G +L I F + E + Sbjct: 331 VVRNKSDLPLAA----ELPSDCFAPVVAISTHTGEGVPQLRDAISNAFMHGHAIDGREFV 386 Query: 176 ENNK 179 +K Sbjct: 387 ALSK 390 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 43/156 (27%), Positives = 79/156 (50%), Gaps = 11/156 (7%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 + + G+PNVGKS+L+N LL R + S G TRD + N P+++ DTAG+R+ Sbjct: 223 VVIAGKPNVGKSSLLNTLLKEKRAIVTSVPGTTRDLIEEVVNINGLPVKLLDTAGIRESD 282 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + +EQ+ V+ S+ + + + ++D + F +D I+ +V + + ++ NK D Sbjct: 283 ---DQVEQEGVRLSLDRIPKADLVLFVIDGSSVFGVEDATILQAVGS--KSCIVVRNKSD 337 Query: 326 ------MVSDKLNLLQDLRTKAIKNLPQIGDIYINT 355 + SD + + T + +PQ+ D N Sbjct: 338 LPLAAELPSDCFAPVVAISTHTGEGVPQLRDAISNA 373 >gi|261368861|ref|ZP_05981744.1| tRNA modification GTPase TrmE [Subdoligranulum variabile DSM 15176] gi|282569034|gb|EFB74569.1| tRNA modification GTPase TrmE [Subdoligranulum variabile DSM 15176] Length = 389 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 65/120 (54%), Gaps = 2/120 (1%) Query: 208 VVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRI 267 ++GRPNVGKSTL+N L G++R + +G TRD V + + +FDTAG+R+ Sbjct: 228 LLGRPNVGKSTLLNLLAGFDRAIVTPVAGTTRDIVEQAVQLGEIRLNLFDTAGVREVGAD 287 Query: 268 TESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMV 327 +++E + +++S + + + + DA P E+ DL I G + LNK D+ Sbjct: 288 GDAIEAEGIRRSWKKLDEAGLVLAVFDAAQPLEESDLDIARRC--QGRPALAILNKQDLA 345 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 78/162 (48%), Gaps = 10/162 (6%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVI-FNIVDTAGI----A 61 ++G PNVGKSTL N L A+V G TRD + QA+ G I N+ DTAG+ A Sbjct: 228 LLGRPNVGKSTLLNLLAGFDRAIVTPVAGTTRD-IVEQAVQLGEIRLNLFDTAGVREVGA 286 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 DG +I + ++ ++EA L+L + D+ + D I R + P + + NK Sbjct: 287 DGD--AIEAEGIRRSWKKLDEAGLVLAVFDAAQPLEESDLDIAR--RCQGRPALAILNKQ 342 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 D + ++ + FK+++ + A+ L + + + Sbjct: 343 DLAESTEAARDLLAPYFKQVLTLCAKDAASLQPLSAAVADLL 384 >gi|153810738|ref|ZP_01963406.1| hypothetical protein RUMOBE_01122 [Ruminococcus obeum ATCC 29174] gi|149833134|gb|EDM88216.1| hypothetical protein RUMOBE_01122 [Ruminococcus obeum ATCC 29174] Length = 302 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 57/193 (29%), Positives = 93/193 (48%), Gaps = 15/193 (7%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKSTL N L+ +K+A+ P TR+R+ +DT GI KN Sbjct: 11 AIIGRPNVGKSTLMNHLIGQKIAITSKKPQTTRNRIQTVYTCEDGQIVFLDTPGIHKAKN 70 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT-- 123 + + M E + + +IL+L++ I + I L+ ++P+I+V NK+DT Sbjct: 71 -KLGEYMVQVAERTLKDVDVILWLVEPTTFIGAGERHIAEQLKGLHLPVILVINKVDTVD 129 Query: 124 ----RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNK 179 A + ++Y DF EI+ SA + T ++ I K P P+ E+ Sbjct: 130 KDEILKAIDTYRKLY--DFDEIIPCSALRNQNTEDIIPCILKYL----PYGPMFYDEDTV 183 Query: 180 RNEESPKENITSE 192 ++ P+ I +E Sbjct: 184 TDQ--PQRQIAAE 194 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/133 (27%), Positives = 68/133 (51%), Gaps = 4/133 (3%) Query: 207 AVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSR 266 A++GRPNVGKSTL+N L+G +T + TR+ + + ++ I DT G+ K Sbjct: 11 AIIGRPNVGKSTLMNHLIGQKIAITSKKPQTTRNRIQTVYTCEDGQIVFLDTPGIHKAKN 70 Query: 267 ITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 L + V+ + ++++ + + L++ T + I + + V+L +NK D Sbjct: 71 ---KLGEYMVQVAERTLKDVDVILWLVEPTTFIGAGERHIAEQLKGLHLPVILVINKVDT 127 Query: 327 VSDKLNLLQDLRT 339 V DK +L+ + T Sbjct: 128 V-DKDEILKAIDT 139 >gi|148380897|ref|YP_001255438.1| GTP-binding protein Era [Clostridium botulinum A str. ATCC 3502] gi|153932263|ref|YP_001385205.1| GTP-binding protein Era [Clostridium botulinum A str. ATCC 19397] gi|153936986|ref|YP_001388674.1| GTP-binding protein Era [Clostridium botulinum A str. Hall] gi|226741172|sp|A7FXK1|ERA_CLOB1 RecName: Full=GTPase Era gi|226741199|sp|A5I626|ERA_CLOBH RecName: Full=GTPase Era gi|148290381|emb|CAL84508.1| GTP-binding protein [Clostridium botulinum A str. ATCC 3502] gi|152928307|gb|ABS33807.1| GTP-binding protein Era [Clostridium botulinum A str. ATCC 19397] gi|152932900|gb|ABS38399.1| GTP-binding protein Era [Clostridium botulinum A str. Hall] Length = 296 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 55/183 (30%), Positives = 95/183 (51%), Gaps = 10/183 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + IVG PNVGKSTL N ++K+K+++V P TR+ + + VDT GI K Sbjct: 7 VTIVGRPNVGKSTLLNAIMKEKLSIVSCRPQTTRNNIQTILTEDNYQLVFVDTPGIHKPK 66 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD-- 122 + + + M A+ + L+LFLI+ D I L++ +P+ +V NK+D Sbjct: 67 H-KLGEYMVKSASEAMKDVDLVLFLINPDEKPGRGDLFIIEQLKEVKVPVFLVLNKIDEN 125 Query: 123 --TRIAQ--RNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEM-IEN 177 ++A+ + + E+ ++F+EI+ ISA L ++FK + +P +M I+ Sbjct: 126 PQEKVAETLKTYSEL--MEFEEIIPISALKGKNIDLLKELMFKYIPEGPQYYPEDMIIDQ 183 Query: 178 NKR 180 N+R Sbjct: 184 NER 186 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/120 (27%), Positives = 60/120 (50%), Gaps = 3/120 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 + +VGRPNVGKSTL+N ++ + + TR+++ N+ + DT G+ KP Sbjct: 7 VTIVGRPNVGKSTLLNAIMKEKLSIVSCRPQTTRNNIQTILTEDNYQLVFVDTPGIHKPK 66 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + VK + ++++ + + L++ + DL I++ + V L LNK D Sbjct: 67 H---KLGEYMVKSASEAMKDVDLVLFLINPDEKPGRGDLFIIEQLKEVKVPVFLVLNKID 123 >gi|148988468|ref|ZP_01819915.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP6-BS73] gi|147926149|gb|EDK77223.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP6-BS73] Length = 457 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 74/120 (61%), Gaps = 5/120 (4%) Query: 207 AVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSR 266 A++GRPNVGKS+L+N LL ++ + +G TRD + N P+++ DTAG+R+ Sbjct: 227 AIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDD 286 Query: 267 ITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 I +EQ V++S ++++ + +++L+A+ P QD ++++ +T ++ LNK D+ Sbjct: 287 I---VEQIGVERSKKALKEADLVLLVLNASEPLTAQDRQLLEISQDTNR--IILLNKTDL 341 Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 42/118 (35%), Positives = 70/118 (59%), Gaps = 5/118 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+++ A+V + G TRD + INGV ++DTAGI + + Sbjct: 227 AIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDD 286 Query: 66 CSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 I +Q+ ++++ A+ EA L+L ++++ +T D + + N II+ NK D Sbjct: 287 --IVEQIGVERSKKALKEADLVLLVLNASEPLTAQDRQLLEISQDTN--RIILLNKTD 340 >gi|281423258|ref|ZP_06254171.1| tRNA modification GTPase TrmE [Prevotella oris F0302] gi|281402594|gb|EFB33425.1| tRNA modification GTPase TrmE [Prevotella oris F0302] Length = 454 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 90/161 (55%), Gaps = 14/161 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G NVGKSTL N L+ + A+V N G TRD + I GV F +DTAGI + K Sbjct: 224 VAIIGKTNVGKSTLLNCLLHEDKAIVSNIHGTTRDVIEDTTEIKGVTFRFIDTAGIRETK 283 Query: 65 NCSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYD--HAITSFLRKKNIPIIIVSNKM 121 + + +Q+ ++ I+EA ++L++ D + Y H +T+ KK +++V NKM Sbjct: 284 D--VVEQLGIERAYKKISEATIVLWVADEQPTTEEYTEIHQLTA--EKK---LLLVFNKM 336 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKI 162 D +++F I ++ ISA+H +EL + I+++ Sbjct: 337 D----RKDFKPITINSKFHVIYISAKHKQNMAELETAIYEV 373 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 31/93 (33%), Positives = 49/93 (52%), Gaps = 5/93 (5%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + K + +A++G+ NVGKSTL+N LL ++ + + G TRD + + K DTA Sbjct: 218 LKKGIPVAIIGKTNVGKSTLLNCLLHEDKAIVSNIHGTTRDVIEDTTEIKGVTFRFIDTA 277 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVL 292 G+R+ + E L + K + E TIVL Sbjct: 278 GIRETKDVVEQLGIERAYKKIS-----EATIVL 305 >gi|168483087|ref|ZP_02708039.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae CDC1873-00] gi|172043445|gb|EDT51491.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae CDC1873-00] Length = 457 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 74/120 (61%), Gaps = 5/120 (4%) Query: 207 AVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSR 266 A++GRPNVGKS+L+N LL ++ + +G TRD + N P+++ DTAG+R+ Sbjct: 227 AIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDD 286 Query: 267 ITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 I +EQ V++S ++++ + +++L+A+ P QD ++++ +T ++ LNK D+ Sbjct: 287 I---VEQIGVERSKKALKEADLVLLVLNASEPLTAQDRQLLEISQDTNR--IILLNKTDL 341 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 42/118 (35%), Positives = 70/118 (59%), Gaps = 5/118 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+++ A+V + G TRD + INGV ++DTAGI + + Sbjct: 227 AIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDD 286 Query: 66 CSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 I +Q+ ++++ A+ EA L+L ++++ +T D + + N II+ NK D Sbjct: 287 --IVEQIGVERSKKALKEADLVLLVLNASEPLTAQDRQLLEISQDTN--RIILLNKTD 340 >gi|149003876|ref|ZP_01828699.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP14-BS69] gi|237650073|ref|ZP_04524325.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae CCRI 1974] gi|237822158|ref|ZP_04598003.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae CCRI 1974M2] gi|147758106|gb|EDK65110.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP14-BS69] gi|301799983|emb|CBW32573.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae OXC141] Length = 457 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 74/120 (61%), Gaps = 5/120 (4%) Query: 207 AVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSR 266 A++GRPNVGKS+L+N LL ++ + +G TRD + N P+++ DTAG+R+ Sbjct: 227 AIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDD 286 Query: 267 ITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 I +EQ V++S ++++ + +++L+A+ P QD ++++ +T ++ LNK D+ Sbjct: 287 I---VEQIGVERSKKALKEADLVLLVLNASEPLTAQDRQLLEISQDTNR--IILLNKTDL 341 Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 42/118 (35%), Positives = 70/118 (59%), Gaps = 5/118 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+++ A+V + G TRD + INGV ++DTAGI + + Sbjct: 227 AIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDD 286 Query: 66 CSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 I +Q+ ++++ A+ EA L+L ++++ +T D + + N II+ NK D Sbjct: 287 --IVEQIGVERSKKALKEADLVLLVLNASEPLTAQDRQLLEISQDTN--RIILLNKTD 340 >gi|15458528|gb|AAK99724.1| Thiophene and furan oxidation protein [Streptococcus pneumoniae R6] Length = 479 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 74/120 (61%), Gaps = 5/120 (4%) Query: 207 AVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSR 266 A++GRPNVGKS+L+N LL ++ + +G TRD + N P+++ DTAG+R+ Sbjct: 249 AIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDD 308 Query: 267 ITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 I +EQ V++S ++++ + +++L+A+ P QD ++++ +T ++ LNK D+ Sbjct: 309 I---VEQIGVERSKKALKEADLVLLVLNASEPLTAQDRQLLEISQDTNR--IILLNKTDL 363 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 42/118 (35%), Positives = 70/118 (59%), Gaps = 5/118 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+++ A+V + G TRD + INGV ++DTAGI + + Sbjct: 249 AIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDD 308 Query: 66 CSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 I +Q+ ++++ A+ EA L+L ++++ +T D + + N II+ NK D Sbjct: 309 --IVEQIGVERSKKALKEADLVLLVLNASEPLTAQDRQLLEISQDTN--RIILLNKTD 362 >gi|303255573|ref|ZP_07341624.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae BS455] gi|303260461|ref|ZP_07346429.1| tRNA modification GTPase [Streptococcus pneumoniae SP-BS293] gi|303262818|ref|ZP_07348755.1| tRNA modification GTPase [Streptococcus pneumoniae SP14-BS292] gi|303265288|ref|ZP_07351198.1| tRNA modification GTPase [Streptococcus pneumoniae BS397] gi|303266495|ref|ZP_07352382.1| tRNA modification GTPase [Streptococcus pneumoniae BS457] gi|303268386|ref|ZP_07354182.1| tRNA modification GTPase [Streptococcus pneumoniae BS458] gi|301801851|emb|CBW34569.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae INV200] gi|302597429|gb|EFL64524.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae BS455] gi|302636016|gb|EFL66514.1| tRNA modification GTPase [Streptococcus pneumoniae SP14-BS292] gi|302638373|gb|EFL68840.1| tRNA modification GTPase [Streptococcus pneumoniae SP-BS293] gi|302642107|gb|EFL72458.1| tRNA modification GTPase [Streptococcus pneumoniae BS458] gi|302643946|gb|EFL74206.1| tRNA modification GTPase [Streptococcus pneumoniae BS457] gi|302645153|gb|EFL75390.1| tRNA modification GTPase [Streptococcus pneumoniae BS397] Length = 457 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 74/120 (61%), Gaps = 5/120 (4%) Query: 207 AVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSR 266 A++GRPNVGKS+L+N LL ++ + +G TRD + N P+++ DTAG+R+ Sbjct: 227 AIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDD 286 Query: 267 ITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 I +EQ V++S ++++ + +++L+A+ P QD ++++ +T ++ LNK D+ Sbjct: 287 I---VEQIGVERSKKALKEADLVLLVLNASEPLTAQDRQLLEISQDTNR--IILLNKTDL 341 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 42/118 (35%), Positives = 70/118 (59%), Gaps = 5/118 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+++ A+V + G TRD + INGV ++DTAGI + + Sbjct: 227 AIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDD 286 Query: 66 CSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 I +Q+ ++++ A+ EA L+L ++++ +T D + + N II+ NK D Sbjct: 287 --IVEQIGVERSKKALKEADLVLLVLNASEPLTAQDRQLLEISQDTN--RIILLNKTD 340 >gi|295109868|emb|CBL23821.1| GTP-binding protein Era [Ruminococcus obeum A2-162] Length = 302 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 58/193 (30%), Positives = 94/193 (48%), Gaps = 15/193 (7%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKSTL N L+ +K+A+ P TR+R+ + +DT GI KN Sbjct: 11 AIIGRPNVGKSTLMNHLIGQKIAITSKKPQTTRNRIQTVYTCDDGQIVFLDTPGIHKAKN 70 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT-- 123 + + M E + + +IL+L++ I + I L+ +IP+I+V NK+DT Sbjct: 71 -KLGEYMVQVAERTLKDVDVILWLVEPTTFIGAGERHIAEQLQGLHIPVILVINKVDTVD 129 Query: 124 ----RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNK 179 A + ++Y DF EI+ SA + T ++ I K P P+ E+ Sbjct: 130 KDEILKAIDTYRKLY--DFDEIIPCSALRNQNTEDIIPSILKYL----PYGPMFYDEDTV 183 Query: 180 RNEESPKENITSE 192 ++ P+ I +E Sbjct: 184 TDQ--PQRQIAAE 194 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 37/133 (27%), Positives = 67/133 (50%), Gaps = 4/133 (3%) Query: 207 AVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSR 266 A++GRPNVGKSTL+N L+G +T + TR+ + + + I DT G+ K Sbjct: 11 AIIGRPNVGKSTLMNHLIGQKIAITSKKPQTTRNRIQTVYTCDDGQIVFLDTPGIHKAK- 69 Query: 267 ITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 L + V+ + ++++ + + L++ T + I + + V+L +NK D Sbjct: 70 --NKLGEYMVQVAERTLKDVDVILWLVEPTTFIGAGERHIAEQLQGLHIPVILVINKVDT 127 Query: 327 VSDKLNLLQDLRT 339 V DK +L+ + T Sbjct: 128 V-DKDEILKAIDT 139 >gi|150024725|ref|YP_001295551.1| tRNA modification GTPase TrmE [Flavobacterium psychrophilum JIP02/86] gi|205829151|sp|A6GXB2|MNME_FLAPJ RecName: Full=tRNA modification GTPase mnmE gi|149771266|emb|CAL42735.1| tRNA modification GTPase TrmE [Flavobacterium psychrophilum JIP02/86] Length = 462 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 52/155 (33%), Positives = 84/155 (54%), Gaps = 7/155 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N L+ ++ A+V G TRD + + +I G+ F +DTAGI + K Sbjct: 224 VAIVGEPNVGKSTLLNTLLNEERAIVSEIAGTTRDTIEDELVIGGIGFRFIDTAGIRETK 283 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNI----PIIIVSNK 120 + + + E I ++ +++FL DS + + KN P+II+ NK Sbjct: 284 DVVESIGIKKTFE-KIEQSQVVVFLFDSSEFKISGLKLKVALEKIKNQFPLKPLIIIGNK 342 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 D ++++ I + + EI+ ISA+ LG +L Sbjct: 343 SD-KLSETEIQNIKT-EIPEILLISAKEKLGVEDL 375 Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 3/91 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VG PNVGKSTL+N LL R + +G TRD++ DTAG+R+ Sbjct: 224 VAIVGEPNVGKSTLLNTLLNEERAIVSEIAGTTRDTIEDELVIGGIGFRFIDTAGIRETK 283 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDAT 296 + ES+ +KK+ + + + + L D++ Sbjct: 284 DVVESI---GIKKTFEKIEQSQVVVFLFDSS 311 >gi|194398466|ref|YP_002037652.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae G54] gi|194358133|gb|ACF56581.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae G54] Length = 457 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 74/120 (61%), Gaps = 5/120 (4%) Query: 207 AVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSR 266 A++GRPNVGKS+L+N LL ++ + +G TRD + N P+++ DTAG+R+ Sbjct: 227 AIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDD 286 Query: 267 ITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 I +EQ V++S ++++ + +++L+A+ P QD ++++ +T ++ LNK D+ Sbjct: 287 I---VEQIGVERSKKALKEADLVLLVLNASEPLTAQDRQLLEISQDTNR--IILLNKTDL 341 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 42/118 (35%), Positives = 70/118 (59%), Gaps = 5/118 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+++ A+V + G TRD + INGV ++DTAGI + + Sbjct: 227 AIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDD 286 Query: 66 CSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 I +Q+ ++++ A+ EA L+L ++++ +T D + + N II+ NK D Sbjct: 287 --IVEQIGVERSKKALKEADLVLLVLNASEPLTAQDRQLLEISQDTN--RIILLNKTD 340 >gi|260589683|ref|ZP_05855596.1| GTP-binding protein Era [Blautia hansenii DSM 20583] gi|331083115|ref|ZP_08332232.1| GTP-binding protein Era [Lachnospiraceae bacterium 6_1_63FAA] gi|260539923|gb|EEX20492.1| GTP-binding protein Era [Blautia hansenii DSM 20583] gi|330405117|gb|EGG84654.1| GTP-binding protein Era [Lachnospiraceae bacterium 6_1_63FAA] Length = 301 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 62/194 (31%), Positives = 100/194 (51%), Gaps = 15/194 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIV--DTAGIAD 62 +AI+G PNVGKSTL N L+ +K+A+ P TR+++ Q + G IV DT GI Sbjct: 10 VAIIGRPNVGKSTLMNHLIGQKIAITSRKPQTTRNKI--QTVYTGEKGQIVFLDTPGIHK 67 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 KN + + M + + +A +IL+L++ + I + I L+ +P+I+V NK+D Sbjct: 68 AKN-KLGEYMVNVAQRTFKDADVILWLVEPTSYIGAGERHIAEQLKNCKLPVILVINKVD 126 Query: 123 T--RIAQRNFYEIYS--LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 T + F + Y +F +IV SA L L +V+ IFK P P+ E+ Sbjct: 127 TVKKSEIAGFIDGYRKLYNFSDIVPASA---LRAQNLDTVLDCIFKY-LPYGPMFYDEDT 182 Query: 179 KRNEESPKENITSE 192 ++ P+ I +E Sbjct: 183 ITDQ--PQRQIVAE 194 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 60/122 (49%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKSTL+N L+G +T + TR+ + + + I DT G+ K Sbjct: 10 VAIIGRPNVGKSTLMNHLIGQKIAITSRKPQTTRNKIQTVYTGEKGQIVFLDTPGIHKAK 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + V + ++ + + + L++ T + I + + N V+L +NK D Sbjct: 70 ---NKLGEYMVNVAQRTFKDADVILWLVEPTSYIGAGERHIAEQLKNCKLPVILVINKVD 126 Query: 326 MV 327 V Sbjct: 127 TV 128 >gi|189499228|ref|YP_001958698.1| tRNA modification GTPase TrmE [Chlorobium phaeobacteroides BS1] gi|189494669|gb|ACE03217.1| tRNA modification GTPase TrmE [Chlorobium phaeobacteroides BS1] Length = 473 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 44/120 (36%), Positives = 69/120 (57%), Gaps = 3/120 (2%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PN GKSTL N L+ ++ A+V + PG TRD + I +F + DTAG+ + Sbjct: 234 AIIGRPNAGKSTLLNALLGEERAIVSHMPGTTRDYIEECFIYEKTMFRLTDTAGLREAAE 293 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKK--NIPIIIVSNKMDT 123 I + ++ I EA LIL+L+D A + + + LR+K +I +++V+NK DT Sbjct: 294 -EIEHEGIRRSYEKIAEADLILYLLDIGASDYEEETSTVTELRQKHPDIQLLVVANKTDT 352 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 39/129 (30%), Positives = 68/129 (52%), Gaps = 10/129 (7%) Query: 173 EMIENNKRNEESPK-ENITSEGKSSVKN------ISKPLRIAVVGRPNVGKSTLINRLLG 225 E +E R E S + EN+ E V++ + + + A++GRPN GKSTL+N LLG Sbjct: 193 EDVEFQSREELSGQVENLQQEVDKLVQSYQHGRLLREGVATAIIGRPNAGKSTLLNALLG 252 Query: 226 YNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRT 285 R + G TRD + + ++ + DTAG+R+ + E +E + +++S + + Sbjct: 253 EERAIVSHMPGTTRDYIEECFIYEKTMFRLTDTAGLREAA---EEIEHEGIRRSYEKIAE 309 Query: 286 CETTIVLLD 294 + + LLD Sbjct: 310 ADLILYLLD 318 >gi|300361843|ref|ZP_07058020.1| GTP-binding protein Era [Lactobacillus gasseri JV-V03] gi|300354462|gb|EFJ70333.1| GTP-binding protein Era [Lactobacillus gasseri JV-V03] Length = 303 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 82/161 (50%), Gaps = 6/161 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A++G PNVGKSTL N LV +K+A++ P TR+++ G + +DT G+ K Sbjct: 13 VALIGRPNVGKSTLLNFLVGQKVAIMSPQPQTTRNKISGIYTDDQEQIVFIDTPGVHKPK 72 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N + M+ + A++E ++LF+++ + D I L+K P+ +V NK+D Sbjct: 73 N-KLDDFMDKSSYSALDEVDVVLFMVEPEPA-GKGDQYIAELLKKIKKPVFLVINKIDKV 130 Query: 125 IAQRNFYEIYSL----DFKEIVEISAEHDLGTSELHSVIFK 161 + I S DF EIV ISA SEL I K Sbjct: 131 HPDKLLSIIDSYKNLGDFAEIVPISASQGNNVSELIKTIAK 171 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 48/167 (28%), Positives = 76/167 (45%), Gaps = 11/167 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKSTL+N L+G + Q TR+ +S + I DT G+ KP Sbjct: 13 VALIGRPNVGKSTLLNFLVGQKVAIMSPQPQTTRNKISGIYTDDQEQIVFIDTPGVHKPK 72 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + K+ ++ V ++ + P K D I + + V L +NK D Sbjct: 73 NKLDDFMDKSSYSALDEV----DVVLFMVEPEPAGKGDQYIAELLKKIKKPVFLVINKID 128 Query: 326 MVS-DKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSV 371 V DKL + D + KNL +I IS G + +L+ ++ Sbjct: 129 KVHPDKLLSIID----SYKNLGDFAEIV--PISASQGNNVSELIKTI 169 >gi|254432026|ref|ZP_05045729.1| tRNA modification GTPase TrmE [Cyanobium sp. PCC 7001] gi|197626479|gb|EDY39038.1| tRNA modification GTPase TrmE [Cyanobium sp. PCC 7001] Length = 456 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 44/126 (34%), Positives = 70/126 (55%), Gaps = 18/126 (14%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKS+L NRL +++ A+V + PG TRD L + +++GV ++DTAGI Sbjct: 230 VAIVGRPNVGKSSLLNRLSRRERAIVTDLPGTTRDLLESELVLDGVPLTLLDTAGI---- 285 Query: 65 NCSIAKQMNDQTE-LAINEAH-------LILFLIDSKAGITPYDHAITSFLRKKNIPIII 116 + +D E L I + ++ + D AG TP D + + + +P+++ Sbjct: 286 -----RPTDDAVEQLGIARSREALAAADAVVLVFDLTAGWTPADAELRALV-PDGVPLLL 339 Query: 117 VSNKMD 122 V NK D Sbjct: 340 VGNKAD 345 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/140 (29%), Positives = 75/140 (53%), Gaps = 5/140 (3%) Query: 187 ENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISW 246 E + +E + + + LR+A+VGRPNVGKS+L+NRL R + G TRD + Sbjct: 212 EQLVAEARQGAL-LREGLRVAIVGRPNVGKSSLLNRLSRRERAIVTDLPGTTRDLLESEL 270 Query: 247 NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRI 306 P+ + DTAG+R P+ +++EQ + +S +++ + +++ D T + D + Sbjct: 271 VLDGVPLTLLDTAGIR-PT--DDAVEQLGIARSREALAAADAVVLVFDLTAGWTPADAEL 327 Query: 307 VDSVFNTGHAVVLALNKWDM 326 ++ G ++L NK D+ Sbjct: 328 -RALVPDGVPLLLVGNKADL 346 >gi|57651106|ref|YP_187524.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus COL] gi|87160757|ref|YP_495280.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|151222824|ref|YP_001333646.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus str. Newman] gi|161510921|ref|YP_001576580.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|258451369|ref|ZP_05699400.1| tRNA modification GTPase mnmE [Staphylococcus aureus A5948] gi|262049467|ref|ZP_06022339.1| tRNA modification GTPase [Staphylococcus aureus D30] gi|262051898|ref|ZP_06024113.1| tRNA modification GTPase [Staphylococcus aureus 930918-3] gi|282920717|ref|ZP_06328436.1| tRNA modification GTPase TrmE [Staphylococcus aureus A9765] gi|284023035|ref|ZP_06377433.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus 132] gi|294849826|ref|ZP_06790566.1| tRNA modification GTPase TrmE [Staphylococcus aureus A9754] gi|73919888|sp|Q5HCI3|MNME_STAAC RecName: Full=tRNA modification GTPase mnmE gi|123484183|sp|Q2FDE8|MNME_STAA3 RecName: Full=tRNA modification GTPase mnmE gi|172049081|sp|A6QKK2|MNME_STAAE RecName: Full=tRNA modification GTPase mnmE gi|189036213|sp|A8YYS1|MNME_STAAT RecName: Full=tRNA modification GTPase mnmE gi|57285292|gb|AAW37386.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus COL] gi|87126731|gb|ABD21245.1| tRNA modification GTPase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|150375624|dbj|BAF68884.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus str. Newman] gi|160369730|gb|ABX30701.1| GTP-binding protein [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|257860899|gb|EEV83716.1| tRNA modification GTPase mnmE [Staphylococcus aureus A5948] gi|259160225|gb|EEW45254.1| tRNA modification GTPase [Staphylococcus aureus 930918-3] gi|259162464|gb|EEW47034.1| tRNA modification GTPase [Staphylococcus aureus D30] gi|282594125|gb|EFB99113.1| tRNA modification GTPase TrmE [Staphylococcus aureus A9765] gi|294823374|gb|EFG39803.1| tRNA modification GTPase TrmE [Staphylococcus aureus A9754] gi|315197916|gb|EFU28249.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus CGS01] gi|320141415|gb|EFW33258.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus MRSA131] gi|320144398|gb|EFW36163.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus MRSA177] Length = 459 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 42/116 (36%), Positives = 70/116 (60%), Gaps = 3/116 (2%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PNVGKS++ N L++ A+V G TRD L + GV +VDTAGI + ++ Sbjct: 226 IVGKPNVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRETEDI 285 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + K +++ A+++A LILF++++ +T D+ + + KN +I++ NKMD Sbjct: 286 -VEKIGVERSRKALSQADLILFVLNNNEALTQEDYTLYEVV--KNEDVIVIVNKMD 338 Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 47/174 (27%), Positives = 91/174 (52%), Gaps = 14/174 (8%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L +VG+PNVGKS+++N L+ N+ + +G TRD + N + P+ + D Sbjct: 216 KIMREGLSTVIVGKPNVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVD 275 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ I E + V++S +++ + + +L+ ++D + + V N V Sbjct: 276 TAGIRETEDIVEKI---GVERSRKALSQADLILFVLNNNEALTQEDYTLYEVVKN--EDV 330 Query: 318 VLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSV 371 ++ +NK D L Q++ +K++ IGD + S EG+D+L + + Sbjct: 331 IVIVNKMD-------LEQNIDINEVKDM--IGDTPLIQTSMLKQEGIDELEIQI 375 >gi|13509041|emb|CAC35271.1| GTP binding protein homologue [Campylobacter jejuni] Length = 190 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 57/192 (29%), Positives = 97/192 (50%), Gaps = 9/192 (4%) Query: 233 SQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVL 292 S +G T D V+ S K+ IE DTAG+RK +I + LE+ + ++ + + + +++ Sbjct: 3 SIAGTTIDPVNESVVHKDKVIEFVDTAGIRKRGKI-QGLERFALNRTEKILSHSQIALLV 61 Query: 293 LDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD---MVSDKLNLLQDLRTKAIKNLPQIG 349 LDA F + D RI V V++ LNKWD M DK +++LR K L Sbjct: 62 LDAHEGFNELDERIAGLVAKHCLGVIIVLNKWDKSEMDFDKT--VKELRLDRFKFLAYAP 119 Query: 350 DIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNR 409 I ++ +SG+ L D +L+I + + +I TS LN+ ++ +P P + + + Sbjct: 120 VISVSALSGKRVHVLLD---KILQIFENFTQKIQTSKLNTLIENATRAHPLPHDYGKLVK 176 Query: 410 LKYITQIQSSPP 421 + Y Q +PP Sbjct: 177 IYYAVQYDLAPP 188 Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust. Identities = 42/173 (24%), Positives = 71/173 (41%), Gaps = 18/173 (10%) Query: 30 VGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD-GKNCSIAKQMNDQTELAINEAHLILF 88 V + G T D + + + VDTAGI GK + + ++TE ++ + + L Sbjct: 1 VSSIAGTTIDPVNESVVHKDKVIEFVDTAGIRKRGKIQGLERFALNRTEKILSHSQIALL 60 Query: 89 LIDSKAGITPYDHAITSFLRKKNIPIIIVSNK-------MDTRIAQRNFYEIYSLDFKEI 141 ++D+ G D I + K + +IIV NK D + + L + + Sbjct: 61 VLDAHEGFNELDERIAGLVAKHCLGVIIVLNKWDKSEMDFDKTVKELRLDRFKFLAYAPV 120 Query: 142 VEISAEHDLGTSELHSV------IFKIFKQKYPNHPLE-MIENNKRNEESPKE 187 + +SA L +H + IF+ F QK L +IEN R P + Sbjct: 121 ISVSA---LSGKRVHVLLDKILQIFENFTQKIQTSKLNTLIENATRAHPLPHD 170 >gi|119025741|ref|YP_909586.1| GTP-binding protein Era [Bifidobacterium adolescentis ATCC 15703] gi|154487437|ref|ZP_02028844.1| hypothetical protein BIFADO_01289 [Bifidobacterium adolescentis L2-32] gi|118765325|dbj|BAF39504.1| widely conserved GTP-binding protein [Bifidobacterium adolescentis ATCC 15703] gi|154083955|gb|EDN83000.1| hypothetical protein BIFADO_01289 [Bifidobacterium adolescentis L2-32] Length = 332 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 62/204 (30%), Positives = 99/204 (48%), Gaps = 24/204 (11%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTL N L+ ++A+ + P TR + G + +VDT GI + Sbjct: 27 VAVVGRPNVGKSTLINALIGTQIAIASSRPETTRKAIRGILTTDNAQIVLVDTPGIHRPR 86 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLR------------KKNI 112 + +++ND + ++++ I FL+ + I P D I S LR K + Sbjct: 87 TL-LGQRLNDVVDESLSDVDAIAFLLPADQEIGPGDKRILSRLRSDFAVKRDDGTFKWKV 145 Query: 113 PIIIVSNKMDT--RIAQ-RNFYEIYSL-DFKEIVEISA-EHDLGTSELHSVIFKIFKQKY 167 P+I + K+D R A EI DF +IV +SA EHD +E+ +V+ + + Sbjct: 146 PLIAIVTKIDELDRSALIDKLIEINEFADFTDIVPVSALEHD-NLAEVRNVLVENMPEGP 204 Query: 168 PNHPLEMIENNKRNEESPKENITS 191 +P E I EE P++ I Sbjct: 205 QMYPAEQI-----TEERPEDTIAE 223 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 41/78 (52%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +AVVGRPNVGKSTLIN L+G + S+ TR ++ N I + DT G+ +P Sbjct: 27 VAVVGRPNVGKSTLINALIGTQIAIASSRPETTRKAIRGILTTDNAQIVLVDTPGIHRPR 86 Query: 266 RITESLEQKTVKKSMQSV 283 + V +S+ V Sbjct: 87 TLLGQRLNDVVDESLSDV 104 >gi|187918053|ref|YP_001883616.1| tRNA modification GTPase TrmE [Borrelia hermsii DAH] gi|119860901|gb|AAX16696.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase [Borrelia hermsii DAH] Length = 464 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 50/160 (31%), Positives = 90/160 (56%), Gaps = 8/160 (5%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+ + G+ NVGKS+LFN L+K+ A+V ++ G TRD + ++G++FN+ DTAG+ + Sbjct: 224 TLVLAGSVNVGKSSLFNLLLKEDRAIVSSYAGTTRDYIQASFELDGILFNVFDTAGLRET 283 Query: 64 KNCSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYD-HAITSFLRKKNIPIIIVSNKM 121 + +Q+ ++ I EA L+L++ID A +T D I S++ ++ V NKM Sbjct: 284 SD--FVEQLGIVRSNSLIKEASLVLYVIDLSARLTNDDLKFIDSYMGHS--KVLFVLNKM 339 Query: 122 DTRIAQR--NFYEIYSLDFKEIVEISAEHDLGTSELHSVI 159 D + +F+ +++ +V+IS + G L+ I Sbjct: 340 DLEQDSQTVDFFNSGNINSSNLVKISTKTLFGIDSLYDKI 379 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 85/172 (49%), Gaps = 11/172 (6%) Query: 196 SVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEI 255 + + + + + + G NVGKS+L N LL +R + S +G TRD + S+ + Sbjct: 215 TARKLDHGITLVLAGSVNVGKSSLFNLLLKEDRAIVSSYAGTTRDYIQASFELDGILFNV 274 Query: 256 FDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGH 315 FDTAG+R+ S + +EQ + +S ++ + ++D + DL+ +DS GH Sbjct: 275 FDTAGLRETS---DFVEQLGIVRSNSLIKEASLVLYVIDLSARLTNDDLKFIDSYM--GH 329 Query: 316 AVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDL 367 + VL V +K++L QD +T N I + IS +T G+D L Sbjct: 330 SKVL------FVLNKMDLEQDSQTVDFFNSGNINSSNLVKISTKTLFGIDSL 375 >gi|23099406|ref|NP_692872.1| GTP-binding protein [Oceanobacillus iheyensis HTE831] gi|81746143|sp|Q8EPY0|ERA_OCEIH RecName: Full=GTPase Era gi|22777635|dbj|BAC13907.1| GTP-binding protein (Era/TrmE family) [Oceanobacillus iheyensis HTE831] Length = 300 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 53/173 (30%), Positives = 87/173 (50%), Gaps = 13/173 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 ++I+G PNVGKST N+++ +K+A++ + TR+++ G N +DT GI K Sbjct: 10 LSIIGRPNVGKSTFMNKVIGQKIAIMSDKAQTTRNKIQGVFTTNDAQMIFIDTPGIHKPK 69 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + M E +NE ILF+I++ G D I L+K N P+ ++ NK+D Sbjct: 70 H-RLGDFMVQIAEDTLNEVDSILFMINADEGYGRGDQYIIDLLQKVNSPVFLIINKIDLI 128 Query: 125 IAQR------NFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHP 171 + + +Y DF+EI+ ISA G + H V + K+ P P Sbjct: 129 HPDQLLPLIEKYKSLY--DFEEIIPISALE--GNNVDHLV--DVLKEHLPEGP 175 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 39/164 (23%), Positives = 85/164 (51%), Gaps = 7/164 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 ++++GRPNVGKST +N+++G + ++ TR+ + + + + DT G+ KP Sbjct: 10 LSIIGRPNVGKSTFMNKVIGQKIAIMSDKAQTTRNKIQGVFTTNDAQMIFIDTPGIHKPK 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L V+ + ++ ++ + +++A + + D I+D + V L +NK D Sbjct: 70 H---RLGDFMVQIAEDTLNEVDSILFMINADEGYGRGDQYIIDLLQKVNSPVFLIINKID 126 Query: 326 MVS-DKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLM 368 ++ D+L L + + K++ + +I I I+ + G + L D++ Sbjct: 127 LIHPDQLLPLIE-KYKSLYDFEEI--IPISALEGNNVDHLVDVL 167 >gi|319760161|ref|YP_004124099.1| tRNA modification GTPase [Candidatus Blochmannia vafer str. BVAF] gi|318038875|gb|ADV33425.1| tRNA modification GTPase [Candidatus Blochmannia vafer str. BVAF] Length = 474 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 57/187 (30%), Positives = 91/187 (48%), Gaps = 17/187 (9%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 I I G PN GKS+LFN L+ A++ + PG TRD LY +NG+ F+I DTAG+ + Sbjct: 221 IIIAGKPNAGKSSLFNALINLDRAIISSIPGTTRDTLYETIQLNGITFHITDTAGLQEHS 280 Query: 65 NCSIA----KQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLR-----KKNIPII 115 I K+ ++ +LA + IL+++DS + YD + + K I Sbjct: 281 TNEIELIGIKRAKNELKLADH----ILWVVDSSSCSNKYDDMLLPLQKTLPNINKKTTIT 336 Query: 116 IVSNKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPL-EM 174 I+ NK D + + IY ++ + +SA + G L ++ K K ++ L Sbjct: 337 IIRNKSDLSLEKNG---IYIINGYTCITLSALLNSGIDLLKKYLYNNTKHKIQHYTLPHS 393 Query: 175 IENNKRN 181 IE N+ N Sbjct: 394 IEENQNN 400 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 28/100 (28%), Positives = 54/100 (54%), Gaps = 2/100 (2%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 ++I + G+PN GKS+L N L+ +R + S G TRD++ + I DTAG+++ Sbjct: 219 IKIIIAGKPNAGKSSLFNALINLDRAIISSIPGTTRDTLYETIQLNGITFHITDTAGLQE 278 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 S T +E +K++ ++ + + ++D++ K D Sbjct: 279 HS--TNEIELIGIKRAKNELKLADHILWVVDSSSCSNKYD 316 >gi|167759571|ref|ZP_02431698.1| hypothetical protein CLOSCI_01928 [Clostridium scindens ATCC 35704] gi|167662798|gb|EDS06928.1| hypothetical protein CLOSCI_01928 [Clostridium scindens ATCC 35704] Length = 471 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 55/167 (32%), Positives = 88/167 (52%), Gaps = 13/167 (7%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 I+G PN GKS+L N L+ + A+V G TRD L + G+ NI+DTAGI D K+ Sbjct: 228 ILGKPNAGKSSLLNVLLGQDKAIVTEIAGTTRDVLEEHINLQGISLNIMDTAGIRDTKDV 287 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK--MDTR 124 + K ++ + ++A LI+++ID+ + D+ I S ++ K P II+ NK +D Sbjct: 288 -VEKIGVEKAKSHADKADLIIYVIDASTELDENDYEILSLIKGK--PSIILLNKSDLDMI 344 Query: 125 IAQRNFYEIY--------SLDFKEIVEISAEHDLGTSELHSVIFKIF 163 + + E Y S + I+EISA++ G EL + +F Sbjct: 345 VTKEKVQEAYFASNPAKKSGEPIPIIEISAKNKQGIDELEEKLKDMF 391 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 58/223 (26%), Positives = 108/223 (48%), Gaps = 24/223 (10%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 I + ++ ++G+PN GKS+L+N LLG ++ + +G TRD + N + + I DTA Sbjct: 220 IKEGIQTVILGKPNAGKSSLLNVLLGQDKAIVTEIAGTTRDVLEEHINLQGISLNIMDTA 279 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R + E + V+K+ + I ++DA+ ++ D I+ + G ++ Sbjct: 280 GIRDTKDVVEKI---GVEKAKSHADKADLIIYVIDASTELDENDYEILSLI--KGKPSII 334 Query: 320 ALNKWDMVSDKLNLLQDLRTKAIKNLP--QIGD-IYINTISGRTGEGLDDLMVSV----L 372 LNK D+ D + + ++ + P + G+ I I IS + +G+D+L + Sbjct: 335 LLNKSDL--DMIVTKEKVQEAYFASNPAKKSGEPIPIIEISAKNKQGIDELEEKLKDMFF 392 Query: 373 EINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQ 415 E N + I Y+ + KT LQ+ YN L+ +T+ Sbjct: 393 EGNLSFNDEI---YITNIRHKTALQDA-------YNALERVTE 425 >gi|313671977|ref|YP_004050088.1| tRNA modification gtpase trme [Calditerrivibrio nitroreducens DSM 19672] gi|312938733|gb|ADR17925.1| tRNA modification GTPase TrmE [Calditerrivibrio nitroreducens DSM 19672] Length = 437 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 44/142 (30%), Positives = 81/142 (57%), Gaps = 7/142 (4%) Query: 196 SVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEI 255 ++++ + + G+PNVGKS+L+N LL R + G TRD + N PI++ Sbjct: 203 TIQHYKTGFAVVIAGKPNVGKSSLLNFLLSQERSIVSDIPGTTRDYILEYANLGGIPIKL 262 Query: 256 FDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGH 315 DTAG+R S +++E+ + +S++ ++ + IVLLDA+ F+ +D I+D Sbjct: 263 IDTAGVRSSS---DTIEKLGIDRSLEMIQHADLVIVLLDAS-SFDDEDRYILD--ITKDK 316 Query: 316 AVVLALNKWDMVSDKLNLLQDL 337 ++ +NK D+V++ L++ DL Sbjct: 317 TRLIFVNKVDLVAN-LDIEHDL 337 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 55/92 (59%), Gaps = 1/92 (1%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + + I G PNVGKS+L N L+ ++ ++V + PG TRD + A + G+ ++DTAG+ Sbjct: 211 FAVVIAGKPNVGKSSLLNFLLSQERSIVSDIPGTTRDYILEYANLGGIPIKLIDTAGVRS 270 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKA 94 + +I K D++ I A L++ L+D+ + Sbjct: 271 SSD-TIEKLGIDRSLEMIQHADLVIVLLDASS 301 >gi|159903869|ref|YP_001551213.1| GTP-binding protein Era-like protein [Prochlorococcus marinus str. MIT 9211] gi|159889045|gb|ABX09259.1| GTP-binding protein ERA-like protein [Prochlorococcus marinus str. MIT 9211] Length = 314 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 48/163 (29%), Positives = 84/163 (51%), Gaps = 6/163 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKSTL+N L+G +T + TR+ + +N + DT G+ KP Sbjct: 16 VALIGRPNVGKSTLVNELVGQKVSITSPVAQTTRNRLRAILTTQNAQLVFVDTPGIHKPH 75 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + L Q+ V+ + +S+ +T +++ + P K D +V+ + V++ LNKWD Sbjct: 76 HL---LGQRLVQSARRSIGEVDTILLIFEGCHPPGKGDYFVVNLLREEERPVLIVLNKWD 132 Query: 326 MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLM 368 ++ + + R K+L + D I S G GL+ L+ Sbjct: 133 LLPLEKS---KQRENEYKDLFRELDWPIFCCSATHGTGLEGLI 172 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 59/118 (50%), Gaps = 1/118 (0%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A++G PNVGKSTL N LV +K+++ TR+RL VDT GI Sbjct: 16 VALIGRPNVGKSTLVNELVGQKVSITSPVAQTTRNRLRAILTTQNAQLVFVDTPGIHKPH 75 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + + +++ +I E IL + + D+ + + LR++ P++IV NK D Sbjct: 76 HL-LGQRLVQSARRSIGEVDTILLIFEGCHPPGKGDYFVVNLLREEERPVLIVLNKWD 132 >gi|295399214|ref|ZP_06809196.1| GTP-binding protein Era [Geobacillus thermoglucosidasius C56-YS93] gi|312110184|ref|YP_003988500.1| GTP-binding protein Era [Geobacillus sp. Y4.1MC1] gi|294978680|gb|EFG54276.1| GTP-binding protein Era [Geobacillus thermoglucosidasius C56-YS93] gi|311215285|gb|ADP73889.1| GTP-binding protein Era [Geobacillus sp. Y4.1MC1] Length = 302 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 49/150 (32%), Positives = 80/150 (53%), Gaps = 13/150 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 ++IVG PNVGKST NR++ +K+A++ + P TR+++ G + +DT G+ K Sbjct: 11 VSIVGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKIQGVYTTDDAQIIFIDTPGMHKPK 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + M A+ E LILF+I+++ G D I L++ N P+ +V NK+D Sbjct: 71 H-KLGDFMMKVALNALKEVDLILFMINAEEGFGRGDAYIIERLKEVNTPVFLVINKID-- 127 Query: 125 IAQRN--------FYEIYSLDFKEIVEISA 146 + N + E+Y F EI+ ISA Sbjct: 128 LVHPNDLLPLIDRYKELYP--FAEIIPISA 155 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +++VGRPNVGKST +NR++G + + TR+ + + + I DT GM KP Sbjct: 11 VSIVGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKIQGVYTTDDAQIIFIDTPGMHKPK 70 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L +K ++ +++ + + +++A F + D I++ + V L +NK D Sbjct: 71 H---KLGDFMMKVALNALKEVDLILFMINAEEGFGRGDAYIIERLKEVNTPVFLVINKID 127 Query: 326 MV 327 +V Sbjct: 128 LV 129 >gi|224368191|ref|YP_002602354.1| Era [Desulfobacterium autotrophicum HRM2] gi|223690907|gb|ACN14190.1| Era [Desulfobacterium autotrophicum HRM2] Length = 300 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 52/159 (32%), Positives = 84/159 (52%), Gaps = 13/159 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVGAPN GKSTL N ++ +K+++ P TRDR+ G G VDT GI Sbjct: 16 IAIVGAPNAGKSTLLNTVLGQKISITSKKPQTTRDRILGVVERPGAQIIFVDTPGIHRAH 75 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + K++ DQ A+++ +L +ID + T + I L+K+N +++ NK+D Sbjct: 76 SL-LNKKIVDQALSAVDDVDAVLLMIDVTSKDTESEALIIEQLQKRNKAVVLALNKID-- 132 Query: 125 IAQRNFYEIYSL--------DFKEIVEISAEHDLGTSEL 155 + + N EI L +FK ++ +SA+ T +L Sbjct: 133 LVKSN--EILPLIARYASLHEFKAVIPVSAKTGDQTEKL 169 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/122 (31%), Positives = 64/122 (52%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA+VG PN GKSTL+N +LG +T + TRD + I DT G+ + Sbjct: 16 IAIVGAPNAGKSTLLNTVLGQKISITSKKPQTTRDRILGVVERPGAQIIFVDTPGIHRAH 75 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + L +K V +++ +V + ++++D T + + I++ + AVVLALNK D Sbjct: 76 SL---LNKKIVDQALSAVDDVDAVLLMIDVTSKDTESEALIIEQLQKRNKAVVLALNKID 132 Query: 326 MV 327 +V Sbjct: 133 LV 134 >gi|169331621|ref|ZP_02860814.1| hypothetical protein ANASTE_00005 [Anaerofustis stercorihominis DSM 17244] gi|169259683|gb|EDS73649.1| hypothetical protein ANASTE_00005 [Anaerofustis stercorihominis DSM 17244] Length = 302 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 57/176 (32%), Positives = 83/176 (47%), Gaps = 7/176 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 I+IVG NVGKSTL N L+ +K+++V N P TR+ + +DT G K Sbjct: 10 ISIVGRTNVGKSTLLNLLLGQKISIVSNRPQTTRNNIRCIRTTGTSQMVFIDTPGFHKPK 69 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 ++ M + + E +ILFL++ I D + L+K+ P+I+V NK+D Sbjct: 70 -SKLSDYMVEVAGESYKEVDVILFLVEEDTTIGKGDEFLIEKLKKEKTPVILVINKIDKI 128 Query: 125 IAQR-----NFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 + YE Y KEIV ISA +EL VI K Q P +M+ Sbjct: 129 TKEEILGKIKLYEKYDF-IKEIVPISAMKGENINELVEVIEKYLPQGPMYFPEDMV 183 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 33/123 (26%), Positives = 59/123 (47%), Gaps = 3/123 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 I++VGR NVGKSTL+N LLG + ++ TR+++ + DT G KP Sbjct: 10 ISIVGRTNVGKSTLLNLLLGQKISIVSNRPQTTRNNIRCIRTTGTSQMVFIDTPGFHKPK 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L V+ + +S + + + L++ K D +++ + V+L +NK D Sbjct: 70 ---SKLSDYMVEVAGESYKEVDVILFLVEEDTTIGKGDEFLIEKLKKEKTPVILVINKID 126 Query: 326 MVS 328 ++ Sbjct: 127 KIT 129 >gi|311278501|ref|YP_003940732.1| GTP-binding protein Era [Enterobacter cloacae SCF1] gi|308747696|gb|ADO47448.1| GTP-binding protein Era [Enterobacter cloacae SCF1] Length = 301 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 50/176 (28%), Positives = 87/176 (49%), Gaps = 6/176 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N+L+ +K+++ TR R+ G VDT G+ + Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGEYQAIYVDTPGLHMEE 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN +I + L++F+++ TP D + + LR+ P+I+ NK+D Sbjct: 71 KRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNV 129 Query: 125 IAQRNF-----YEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 + + + ++F +IV ISAE + + ++ K + + P + I Sbjct: 130 QEKADLLPHLQFLASQMNFLDIVPISAETGMNVDTIAGIVRKHLPEAIHHFPEDYI 185 Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 51/161 (31%), Positives = 82/161 (50%), Gaps = 9/161 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS-VSISWNWKNHPIEIFDTAGMRKP 264 IA+VGRPNVGKSTL+N+LLG +T ++ TR V I + I + DT G+ Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGEYQAIYV-DTPGLHME 69 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 + ++ + K + S+ E I +++ T + D +++ + V+LA+NK Sbjct: 70 EK--RAINRLMNKAASSSIGDVELVIFVVEGT-RWTPDDEMVLNKLREGKAPVILAVNKV 126 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLD 365 D V +K +LL L+ A Q+ + I IS TG +D Sbjct: 127 DNVQEKADLLPHLQFLA----SQMNFLDIVPISAETGMNVD 163 >gi|168334919|ref|ZP_02693039.1| tRNA modification GTPase TrmE [Epulopiscium sp. 'N.t. morphotype B'] Length = 443 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 62/210 (29%), Positives = 107/210 (50%), Gaps = 34/210 (16%) Query: 192 EGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNH 251 E ++ K I + + +VGRPNVGKS+L+N LL ++ + + +G TRD VS ++ + Sbjct: 205 ETAATGKIIREGAVVTIVGRPNVGKSSLLNALLEEDKAIVTNIAGTTRDIVSEHFSVEGV 264 Query: 252 PIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDAT--IPFEKQDLRIVDS 309 P + DTAG+R + +++E+ V++S +++ + I+LLDAT I E+ DL + Sbjct: 265 PFILQDTAGIRDTA---DAVERIGVERSKEAIEKSDLVIMLLDATEKISIEEVDLMTMLK 321 Query: 310 VFNTGHAVVLALNKWDMV---SDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDD 366 NT + +NK D V SD + IS TGEG+D+ Sbjct: 322 NRNT----LFVVNKIDCVDKYSDDDKIF---------------------ISATTGEGIDE 356 Query: 367 LMVSVLEINKLWKTRITTSYLNSWLQKTQL 396 L + ++ + + T+ +++ QKT L Sbjct: 357 LK-AAMKAAVVQNLTMGTAVISNIRQKTAL 385 Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 85/155 (54%), Gaps = 12/155 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + IVG PNVGKS+L N L+++ A+V N G TRD + + GV F + DTAGI D Sbjct: 219 VTIVGRPNVGKSSLLNALLEEDKAIVTNIAGTTRDIVSEHFSVEGVPFILQDTAGIRDTA 278 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + ++ + ++++ AI ++ L++ L+D+ I+ + + + L+ +N + V NK+D Sbjct: 279 D-AVERIGVERSKEAIEKSDLVIMLLDATEKISIEEVDLMTMLKNRN--TLFVVNKIDC- 334 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVI 159 + YS D K + ISA G EL + + Sbjct: 335 ------VDKYSDDDK--IFISATTGEGIDELKAAM 361 >gi|326571815|gb|EGE21821.1| tRNA modification GTPase TrmE [Moraxella catarrhalis BC7] Length = 466 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 50/175 (28%), Positives = 87/175 (49%), Gaps = 23/175 (13%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 + + + G+PN GKS+L+NRL G R + +G TRD++ + + + DTAG+RK Sbjct: 221 VHVVLAGKPNAGKSSLLNRLSGTERAIVTEIAGTTRDTLEETLILNGLTVHLTDTAGLRK 280 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTG--------- 314 + +E+ +K++ ++R + +++ D T E L + D +F G Sbjct: 281 TD---DHVEKIGIKRAFDAIRQADVLMMVYDVTT--ETDPLALADQLFCEGVTEDVGDII 335 Query: 315 -HAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLM 368 ++L NK D++ K L TK+ L +Y +S TGEGLD+L+ Sbjct: 336 RQKLILVANKSDLLISKPVLQVSCETKSAPKL-----VY---VSCETGEGLDELI 382 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 54/191 (28%), Positives = 85/191 (44%), Gaps = 40/191 (20%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + + G PN GKS+L NRL + A+V G TRD L I+NG+ ++ DTAG+ Sbjct: 223 VVLAGKPNAGKSSLLNRLSGTERAIVTEIAGTTRDTLEETLILNGLTVHLTDTAGL---- 278 Query: 65 NCSIAKQMNDQTEL--------AINEAHLILFLIDSKAGITPYDHA-----------ITS 105 ++ +D E AI +A +++ + D P A + Sbjct: 279 -----RKTDDHVEKIGIKRAFDAIRQADVLMMVYDVTTETDPLALADQLFCEGVTEDVGD 333 Query: 106 FLRKKNIPIIIVSNKMDTRIAQRNFYEIYSLDFK---EIVEISAEHDLGTSELHSVIFKI 162 +R+K +I+V+NK D I++ S + K ++V +S E G EL +I Sbjct: 334 IIRQK---LILVANKSDLLISKPVLQ--VSCETKSAPKLVYVSCETGEGLDEL----IEI 384 Query: 163 FKQKYPNHPLE 173 QK HP E Sbjct: 385 LTQKVGFHPPE 395 >gi|258645786|ref|ZP_05733255.1| GTP-binding protein Era [Dialister invisus DSM 15470] gi|260403157|gb|EEW96704.1| GTP-binding protein Era [Dialister invisus DSM 15470] Length = 300 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 53/170 (31%), Positives = 87/170 (51%), Gaps = 13/170 (7%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP- 264 +A+VGRPNVGKSTL+N +LG + + + TR+ ++ WN KN + DT GM KP Sbjct: 11 VALVGRPNVGKSTLMNAVLGEKVSIVSAHAQTTRNKITGVWNGKNSQVVFLDTPGMHKPQ 70 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 S++ + + Q TV ++ + + + P D I++ + + VVL L+K Sbjct: 71 SKLGQVIRQSTV----DALDEVDVIVFICACNDPLGAGDRYILNLLKDKKVPVVLVLSKI 126 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDI-YINTISGRTGEGLDDLMVSVLE 373 D++ +D+ K I +I I +S R+GE L + +VLE Sbjct: 127 DLIK------KDMLLKKIGQYSRIHPFSEIIPLSARSGENLKEF-TTVLE 169 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 54/200 (27%), Positives = 101/200 (50%), Gaps = 27/200 (13%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIING----VIFNIVDTAGI 60 +A+VG PNVGKSTL N ++ +K+++V H TR+++ G + NG V+F +DT G+ Sbjct: 11 VALVGRPNVGKSTLMNAVLGEKVSIVSAHAQTTRNKITG--VWNGKNSQVVF--LDTPGM 66 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 ++ + + + T A++E +I+F+ + D I + L+ K +P+++V +K Sbjct: 67 HKPQS-KLGQVIRQSTVDALDEVDVIVFICACNDPLGAGDRYILNLLKDKKVPVVLVLSK 125 Query: 121 MD--------TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPL 172 +D +I Q + I+ F EI+ +SA E +V+ + + P Sbjct: 126 IDLIKKDMLLKKIGQ--YSRIHP--FSEIIPLSARSGENLKEFTTVLERYLPEGPKYFPD 181 Query: 173 EMIENNKRNEESPKENITSE 192 +M+ + P+ NI E Sbjct: 182 DMVTDQ------PERNIVQE 195 >gi|323483769|ref|ZP_08089149.1| hypothetical protein HMPREF9474_00898 [Clostridium symbiosum WAL-14163] gi|323692742|ref|ZP_08106970.1| GTP-binding protein Era [Clostridium symbiosum WAL-14673] gi|323402960|gb|EGA95278.1| hypothetical protein HMPREF9474_00898 [Clostridium symbiosum WAL-14163] gi|323503184|gb|EGB19018.1| GTP-binding protein Era [Clostridium symbiosum WAL-14673] Length = 300 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 53/168 (31%), Positives = 84/168 (50%), Gaps = 19/168 (11%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLY-------GQAIINGVIFNIVDT 57 + ++G PNVGKSTL N L+ +K+A+ + P TR+R+ GQ +IF +DT Sbjct: 10 VTLIGRPNVGKSTLMNHLIGQKIAITSDKPQTTRNRIQTVYTDERGQ-----IIF--LDT 62 Query: 58 AGIADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIV 117 GI KN + + M E + E +IL+L++ I + I L K P+++V Sbjct: 63 PGIHKAKN-KLGEYMVSVAEHTLKEVDVILWLVEPSTFIGAGERHIAEQLNKVKTPVMLV 121 Query: 118 SNKMDTRIAQR--NFYEIYS--LDFKEIVEISAEHDLGTSELHSVIFK 161 NK+DT F Y +F EI+ +SA ++ ++ IFK Sbjct: 122 INKIDTVKKDEILTFIAAYKDICNFAEIIPVSALKEINIDDVKDCIFK 169 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 31/122 (25%), Positives = 58/122 (47%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 + ++GRPNVGKSTL+N L+G +T + TR+ + + + I DT G+ K Sbjct: 10 VTLIGRPNVGKSTLMNHLIGQKIAITSDKPQTTRNRIQTVYTDERGQIIFLDTPGIHKAK 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + V + +++ + + L++ + + I + + V+L +NK D Sbjct: 70 N---KLGEYMVSVAEHTLKEVDVILWLVEPSTFIGAGERHIAEQLNKVKTPVMLVINKID 126 Query: 326 MV 327 V Sbjct: 127 TV 128 >gi|282902629|ref|ZP_06310522.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus C160] gi|282597088|gb|EFC02047.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus C160] Length = 459 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 42/116 (36%), Positives = 70/116 (60%), Gaps = 3/116 (2%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PNVGKS++ N L++ A+V G TRD L + GV +VDTAGI + ++ Sbjct: 226 IVGKPNVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRETEDI 285 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + K +++ A+++A LILF++++ +T D+ + + KN +I++ NKMD Sbjct: 286 -VEKIGVERSRKALSQADLILFVLNNNEALTQEDYTLYEVV--KNEDVIVIVNKMD 338 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 47/177 (26%), Positives = 93/177 (52%), Gaps = 14/177 (7%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L +VG+PNVGKS+++N L+ N+ + +G TRD + N + P+ + D Sbjct: 216 KIMREGLSTVIVGKPNVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVD 275 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ I E + V++S +++ + + +L+ ++D + + V N V Sbjct: 276 TAGIRETEDIVEKI---GVERSRKALSQADLILFVLNNNEALTQEDYTLYEVVKN--EDV 330 Query: 318 VLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEI 374 ++ +NK D L Q++ +K++ IGD + S EG+D+L + + ++ Sbjct: 331 IVIVNKMD-------LEQNIDINEVKDM--IGDTPLIQTSMLKQEGIDELEIQIRDL 378 >gi|260495366|ref|ZP_05815493.1| tRNA modification GTPase TrmE [Fusobacterium sp. 3_1_33] gi|260197144|gb|EEW94664.1| tRNA modification GTPase TrmE [Fusobacterium sp. 3_1_33] Length = 455 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 48/159 (30%), Positives = 86/159 (54%), Gaps = 7/159 (4%) Query: 171 PLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLL 230 P +++N K+ K+ + S K + I ++ A++G+PNVGKS+++N LL +R + Sbjct: 189 PENLVDNLKKASAEIKDLVLSYDKGKI--IKDGIKTAIIGKPNVGKSSILNSLLREDRAI 246 Query: 231 TGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTI 290 G TRD + N P+ + DTAG+R I E++ V+KS + + + + + Sbjct: 247 VTHIPGTTRDIIEEVININGIPLLLVDTAGIRNTDDIIENI---GVEKSKELINSADLIL 303 Query: 291 VLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSD 329 ++D + +++D RI D + NT V+ LNK D+ D Sbjct: 304 YVIDISREIDEEDFRIYD-IINT-DKVIGILNKIDIKKD 340 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 58/182 (31%), Positives = 94/182 (51%), Gaps = 11/182 (6%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS++ N L+++ A+V + PG TRD + ING+ +VDTAGI + + Sbjct: 223 AIIGKPNVGKSSILNSLLREDRAIVTHIPGTTRDIIEEVININGIPLLLVDTAGIRNTDD 282 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR- 124 + EL IN A LIL++ID I D I + +I + NK+D + Sbjct: 283 IIENIGVEKSKEL-INSADLILYVIDISREIDEEDFRIYDIINTD--KVIGILNKIDIKK 339 Query: 125 -IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK-IFKQKYPNHPLEMIENNKRNE 182 I F +I ++ +EISA +G L + I+K I + + +++ N R++ Sbjct: 340 DIDLSKFSKI-----EKWIEISALSKIGIDNLENEIYKFIMNENVEDSSQKLVITNVRHK 394 Query: 183 ES 184 + Sbjct: 395 SA 396 >gi|168181631|ref|ZP_02616295.1| GTP-binding protein Era [Clostridium botulinum Bf] gi|237796398|ref|YP_002863950.1| GTP-binding protein Era [Clostridium botulinum Ba4 str. 657] gi|259645941|sp|C3L3F3|ERA_CLOB6 RecName: Full=GTPase Era gi|182675144|gb|EDT87105.1| GTP-binding protein Era [Clostridium botulinum Bf] gi|229262668|gb|ACQ53701.1| GTP-binding protein Era [Clostridium botulinum Ba4 str. 657] Length = 296 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 55/183 (30%), Positives = 95/183 (51%), Gaps = 10/183 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + IVG PNVGKSTL N ++K+K+++V P TR+ + + VDT GI K Sbjct: 7 VTIVGRPNVGKSTLLNAIMKEKLSIVSCRPQTTRNNIQTILTEDNYQLVFVDTPGIHKPK 66 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD-- 122 + + + M A+ + L+LFLI+ D I L++ +P+ +V NK+D Sbjct: 67 H-KLGEYMVKSASDAMKDVDLVLFLINPDEKPGRGDLFIIEQLKEVKVPVFLVLNKIDEN 125 Query: 123 --TRIAQ--RNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEM-IEN 177 ++A+ + + E+ ++F+EI+ ISA L ++FK + +P +M I+ Sbjct: 126 PQEKVAETLKTYSEL--MEFEEIIPISALKGKNIDLLKELMFKYIPEGPQYYPEDMIIDQ 183 Query: 178 NKR 180 N+R Sbjct: 184 NER 186 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 33/120 (27%), Positives = 59/120 (49%), Gaps = 3/120 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 + +VGRPNVGKSTL+N ++ + + TR+++ N+ + DT G+ KP Sbjct: 7 VTIVGRPNVGKSTLLNAIMKEKLSIVSCRPQTTRNNIQTILTEDNYQLVFVDTPGIHKPK 66 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + VK + +++ + + L++ + DL I++ + V L LNK D Sbjct: 67 H---KLGEYMVKSASDAMKDVDLVLFLINPDEKPGRGDLFIIEQLKEVKVPVFLVLNKID 123 >gi|167037775|ref|YP_001665353.1| GTP-binding protein Era [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167039985|ref|YP_001662970.1| GTP-binding protein Era [Thermoanaerobacter sp. X514] gi|256751969|ref|ZP_05492839.1| GTP-binding protein Era [Thermoanaerobacter ethanolicus CCSD1] gi|300914075|ref|ZP_07131391.1| GTP-binding protein Era [Thermoanaerobacter sp. X561] gi|307724692|ref|YP_003904443.1| GTP-binding protein Era [Thermoanaerobacter sp. X513] gi|320116190|ref|YP_004186349.1| GTP-binding protein Era [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|226741400|sp|B0KA54|ERA_THEP3 RecName: Full=GTPase Era gi|226741401|sp|B0K708|ERA_THEPX RecName: Full=GTPase Era gi|166854225|gb|ABY92634.1| GTP-binding protein Era [Thermoanaerobacter sp. X514] gi|166856609|gb|ABY95017.1| GTP-binding protein Era [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256749174|gb|EEU62208.1| GTP-binding protein Era [Thermoanaerobacter ethanolicus CCSD1] gi|300889010|gb|EFK84156.1| GTP-binding protein Era [Thermoanaerobacter sp. X561] gi|307581753|gb|ADN55152.1| GTP-binding protein Era [Thermoanaerobacter sp. X513] gi|319929281|gb|ADV79966.1| GTP-binding protein Era [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 302 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 49/148 (33%), Positives = 83/148 (56%), Gaps = 9/148 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG NVGKSTL N ++++K+A+ P TR+ + G + VDT GI K Sbjct: 8 VALVGRTNVGKSTLLNAILQEKIAITSPKPQTTRNTIRGILTTDEYQVIFVDTPGIHKPK 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD-- 122 + +++ M + + + E LIL++I+ + P D I L++ + P+I+V NK+D Sbjct: 68 S-KLSEFMIEVAKRTLKEVDLILYMIEPDTEVGPGDRYIIEHLKEVDTPVILVVNKIDLV 126 Query: 123 --TRIAQ--RNFYEIYSLDFKEIVEISA 146 R+ + + F E Y +FK++V ISA Sbjct: 127 PEKRVEETIKIFKEQY--EFKDVVAISA 152 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 32/126 (25%), Positives = 67/126 (53%), Gaps = 5/126 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP- 264 +A+VGR NVGKSTL+N +L +T + TR+++ + + DT G+ KP Sbjct: 8 VALVGRTNVGKSTLLNAILQEKIAITSPKPQTTRNTIRGILTTDEYQVIFVDTPGIHKPK 67 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 S+++E + ++ + ++++ + + +++ D I++ + V+L +NK Sbjct: 68 SKLSEFM----IEVAKRTLKEVDLILYMIEPDTEVGPGDRYIIEHLKEVDTPVILVVNKI 123 Query: 325 DMVSDK 330 D+V +K Sbjct: 124 DLVPEK 129 >gi|256845852|ref|ZP_05551310.1| GTP-binding protein Era [Fusobacterium sp. 3_1_36A2] gi|256719411|gb|EEU32966.1| GTP-binding protein Era [Fusobacterium sp. 3_1_36A2] Length = 298 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 41/126 (32%), Positives = 71/126 (56%), Gaps = 5/126 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IAVVGRPNVGKSTLIN+L+ + ++G TRD++ N+K++ DT G+ KP Sbjct: 6 IAVVGRPNVGKSTLINKLVSEKVAIVSDKAGTTRDNIKGILNFKDNQYIFIDTPGIHKPQ 65 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHA--VVLALNK 323 + L + +++ ++ + + L+DA+ P D+ ++D + +L +NK Sbjct: 66 HL---LGEYMTNIAVKILKDVDIILFLIDASKPIGTGDMSVMDRINENAKKKPKILLVNK 122 Query: 324 WDMVSD 329 D++SD Sbjct: 123 VDLISD 128 Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 42/120 (35%), Positives = 67/120 (55%), Gaps = 3/120 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTL N+LV +K+A+V + G TRD + G + +DT GI + Sbjct: 6 IAVVGRPNVGKSTLINKLVSEKVAIVSDKAGTTRDNIKGILNFKDNQYIFIDTPGIHKPQ 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRK--KNIPIIIVSNKMD 122 + + + M + + + +ILFLID+ I D ++ + + K P I++ NK+D Sbjct: 66 HL-LGEYMTNIAVKILKDVDIILFLIDASKPIGTGDMSVMDRINENAKKKPKILLVNKVD 124 >gi|157371903|ref|YP_001479892.1| GTP-binding protein Era [Serratia proteamaculans 568] gi|157323667|gb|ABV42764.1| GTP-binding protein Era [Serratia proteamaculans 568] Length = 302 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 48/176 (27%), Positives = 88/176 (50%), Gaps = 6/176 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N+L+ +K+++ P TR R+ G VDT G+ + Sbjct: 11 IAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGIDTDGAYQAIYVDTPGLHIEE 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD-- 122 +I + MN +I + L++F+++ T D + + LR P+++ NK+D Sbjct: 71 KRAINRLMNRAASSSIGDVELVIFVVEG-TNWTADDEMVVNKLRSLKCPVLLAINKVDNV 129 Query: 123 ---TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 +++ + ++F ++V ISAE + + ++ K+ + + P + I Sbjct: 130 TDKSKLLPHIAFLSQQMNFLDVVPISAEKGMNVDTIAAIARKVLPEAEHHFPDDYI 185 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 45/131 (34%), Positives = 68/131 (51%), Gaps = 7/131 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV-SISWNWKNHPIEIFDTAGMR-K 263 IA+VGRPNVGKSTL+N+LLG +T + TR + I + I + DT G+ + Sbjct: 11 IAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGIDTDGAYQAIYV-DTPGLHIE 69 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 R L + S+ V E I +++ T + D +V+ + + V+LA+NK Sbjct: 70 EKRAINRLMNRAASSSIGDV---ELVIFVVEGT-NWTADDEMVVNKLRSLKCPVLLAINK 125 Query: 324 WDMVSDKLNLL 334 D V+DK LL Sbjct: 126 VDNVTDKSKLL 136 >gi|82752290|ref|YP_418031.1| tRNA modification GTPase TrmE [Staphylococcus aureus RF122] gi|123549492|sp|Q2YZB8|MNME_STAAB RecName: Full=tRNA modification GTPase mnmE gi|82657821|emb|CAI82276.1| tRNA modification GTPase [Staphylococcus aureus RF122] Length = 459 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 42/116 (36%), Positives = 70/116 (60%), Gaps = 3/116 (2%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PNVGKS++ N L++ A+V G TRD L + GV +VDTAGI + ++ Sbjct: 226 IVGKPNVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRETEDI 285 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + K +++ A+++A LILF++++ +T D+ + + KN +I++ NKMD Sbjct: 286 -VEKIGVERSRKALSQADLILFVLNNNEALTQEDYTLYEVV--KNEDVIVIVNKMD 338 Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 47/177 (26%), Positives = 93/177 (52%), Gaps = 14/177 (7%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L +VG+PNVGKS+++N L+ N+ + +G TRD + N + P+ + D Sbjct: 216 KIMREGLSTVIVGKPNVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVD 275 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ I E + V++S +++ + + +L+ ++D + + V N V Sbjct: 276 TAGIRETEDIVEKI---GVERSRKALSQADLILFVLNNNEALTQEDYTLYEVVKN--EDV 330 Query: 318 VLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEI 374 ++ +NK D L Q++ +K++ IGD + S EG+D+L + + ++ Sbjct: 331 IVIVNKMD-------LEQNIDINEVKDM--IGDTPLIQTSMLKQEGIDELEIQIRDL 378 >gi|325687543|gb|EGD29564.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis SK72] gi|327474426|gb|EGF19832.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis SK408] Length = 457 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 74/120 (61%), Gaps = 5/120 (4%) Query: 207 AVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSR 266 A++GRPNVGKS+L+N LL ++ + G TRD + N K P+++ DTAG+R+ Sbjct: 227 AIIGRPNVGKSSLLNNLLREDKAIVTDIEGTTRDVIEEYVNIKGLPLKLIDTAGIRETDD 286 Query: 267 ITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 + +EQ V++S ++++ + +++L+A+ P QD ++++ ++ V+ LNK D+ Sbjct: 287 L---VEQIGVERSKKALQEADLVLLVLNASEPLTDQDRQLLEISKDSNRIVL--LNKTDL 341 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 46/161 (28%), Positives = 86/161 (53%), Gaps = 14/161 (8%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+++ A+V + G TRD + I G+ ++DTAGI + + Sbjct: 227 AIIGRPNVGKSSLLNNLLREDKAIVTDIEGTTRDVIEEYVNIKGLPLKLIDTAGIRETDD 286 Query: 66 CSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +Q+ ++++ A+ EA L+L ++++ +T D + + N I++ NK D Sbjct: 287 --LVEQIGVERSKKALQEADLVLLVLNASEPLTDQDRQLLEISKDSN--RIVLLNKTD-- 340 Query: 125 IAQRNFYEIYSLDF--KEIVEISAEHDLGTSELHSVIFKIF 163 E LD ++++IS H+ ++ I ++F Sbjct: 341 -----LEEKIELDLLPTDVIKISVLHNQNIDKIEERINQLF 376 >gi|298695968|gb|ADI99190.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus ED133] Length = 459 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 42/116 (36%), Positives = 70/116 (60%), Gaps = 3/116 (2%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PNVGKS++ N L++ A+V G TRD L + GV +VDTAGI + ++ Sbjct: 226 IVGKPNVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRETEDI 285 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + K +++ A+++A LILF++++ +T D+ + + KN +I++ NKMD Sbjct: 286 -VEKIGVERSRKALSQADLILFVLNNNEALTQEDYTLYEVV--KNEDVIVIVNKMD 338 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 46/177 (25%), Positives = 93/177 (52%), Gaps = 14/177 (7%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L +VG+PNVGKS+++N L+ N+ + +G TRD + N + P+ + D Sbjct: 216 KIMREGLSTVIVGKPNVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVD 275 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ I E + V++S +++ + + +L+ ++D + + V N V Sbjct: 276 TAGIRETEDIVEKI---GVERSRKALSQADLILFVLNNNEALTQEDYTLYEVVKN--EDV 330 Query: 318 VLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEI 374 ++ +NK D L Q++ +K++ IG+ + S EG+D+L + + ++ Sbjct: 331 IVIVNKMD-------LEQNIDINEVKDM--IGNTPLIQTSMLKQEGIDELEIQIRDL 378 >gi|205374162|ref|ZP_03226962.1| GTP-binding protein Era [Bacillus coahuilensis m4-4] Length = 306 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 46/147 (31%), Positives = 76/147 (51%), Gaps = 7/147 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 ++I+G PNVGKST NR++ +K+A++ + P TR+++ G + +DT GI K Sbjct: 15 VSIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKVQGVLTLADSQIVFIDTPGIHKPK 74 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + M + + E ++LF++D GI D I L+ + P+ +V NK+D Sbjct: 75 H-KLGDFMMKVAQNTLKEVDIVLFMVDVAEGIGKGDEFIIEKLKNVSTPVFLVLNKIDA- 132 Query: 125 IAQRNFYEIYS-----LDFKEIVEISA 146 I + I +F EIV ISA Sbjct: 133 IHPDELFSIIEEYRSRFEFTEIVPISA 159 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/137 (27%), Positives = 70/137 (51%), Gaps = 5/137 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 ++++GRPNVGKST +NR++G + + TR+ V + I DT G+ KP Sbjct: 15 VSIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKVQGVLTLADSQIVFIDTPGIHKPK 74 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L +K + +++ + + ++D K D I++ + N V L LNK D Sbjct: 75 H---KLGDFMMKVAQNTLKEVDIVLFMVDVAEGIGKGDEFIIEKLKNVSTPVFLVLNKID 131 Query: 326 MVS-DKL-NLLQDLRTK 340 + D+L +++++ R++ Sbjct: 132 AIHPDELFSIIEEYRSR 148 >gi|55822936|ref|YP_141377.1| tRNA modification GTPase TrmE [Streptococcus thermophilus CNRZ1066] gi|116627781|ref|YP_820400.1| tRNA modification GTPase TrmE [Streptococcus thermophilus LMD-9] gi|81559421|sp|Q5LZW3|MNME_STRT1 RecName: Full=tRNA modification GTPase mnmE gi|122267622|sp|Q03KR8|MNME_STRTD RecName: Full=tRNA modification GTPase mnmE gi|55738921|gb|AAV62562.1| thiophene and furan oxidation protein [Streptococcus thermophilus CNRZ1066] gi|116101058|gb|ABJ66204.1| tRNA modification GTPase trmE [Streptococcus thermophilus LMD-9] gi|312278338|gb|ADQ62995.1| tRNA modification GTPase mnmE [Streptococcus thermophilus ND03] Length = 456 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 43/140 (30%), Positives = 78/140 (55%), Gaps = 6/140 (4%) Query: 187 ENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISW 246 EN+ + K K + + L A++GRPNVGKS+L+N LL + + G TRD + Sbjct: 207 ENLLATAKRG-KILREGLSTAIIGRPNVGKSSLLNNLLREEKAIVTDIEGTTRDVIEEYV 265 Query: 247 NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRI 306 N K P+++ DTAG+R + E + V++S +++ + +++L+++ P QD + Sbjct: 266 NIKGVPLKLIDTAGIRDTDDVVEKI---GVERSKKALEEADLVLLVLNSSEPLTDQDRTL 322 Query: 307 VDSVFNTGHAVVLALNKWDM 326 +D N+ ++ LNK D+ Sbjct: 323 LDISQNSNR--IILLNKTDL 340 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 42/117 (35%), Positives = 68/117 (58%), Gaps = 3/117 (2%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L++++ A+V + G TRD + I GV ++DTAGI D + Sbjct: 226 AIIGRPNVGKSSLLNNLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRDTDD 285 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + K ++++ A+ EA L+L +++S +T D + + N II+ NK D Sbjct: 286 V-VEKIGVERSKKALEEADLVLLVLNSSEPLTDQDRTLLDISQNSN--RIILLNKTD 339 >gi|281355086|ref|ZP_06241580.1| ferrous iron transport protein B [Victivallis vadensis ATCC BAA-548] gi|281317966|gb|EFB01986.1| ferrous iron transport protein B [Victivallis vadensis ATCC BAA-548] Length = 718 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 54/175 (30%), Positives = 88/175 (50%), Gaps = 7/175 (4%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 IY IA+ G PN GK+T+FN+L + VGN+PG+T +R G IN I+D GI Sbjct: 5 IYRIALAGNPNCGKTTIFNQLTGTRQH-VGNYPGVTVERKSGMCRINDFQIEIIDLPGIY 63 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 N S +++ Q EL LIL ++DS G + +T+ L + ++P+++V N + Sbjct: 64 SLSNSSPEEKVAFQ-ELLNGGIDLILNVVDS--GNAQRNLYLTTQLAELDLPMLLVFNMI 120 Query: 122 D---TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLE 173 D R +F ++ IV+ G EL +++I + P P++ Sbjct: 121 DDAKQRGLHFDFEKLSGFFGAPIVKTVGSTGFGMKELRDEVYRIAHEATPQRPVK 175 Score = 37.7 bits (86), Expect = 4.5, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 1/57 (1%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGM 261 RIA+ G PN GK+T+ N+L G R G+ G+T + S + IEI D G+ Sbjct: 7 RIALAGNPNCGKTTIFNQLTG-TRQHVGNYPGVTVERKSGMCRINDFQIEIIDLPGI 62 >gi|55821017|ref|YP_139459.1| tRNA modification GTPase TrmE [Streptococcus thermophilus LMG 18311] gi|81560616|sp|Q5M4H3|MNME_STRT2 RecName: Full=tRNA modification GTPase mnmE gi|55737002|gb|AAV60644.1| thiophene and furan oxidation protein [Streptococcus thermophilus LMG 18311] Length = 456 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 43/140 (30%), Positives = 78/140 (55%), Gaps = 6/140 (4%) Query: 187 ENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISW 246 EN+ + K K + + L A++GRPNVGKS+L+N LL + + G TRD + Sbjct: 207 ENLLATAKRG-KILREGLSTAIIGRPNVGKSSLLNNLLREEKAIVTDIEGTTRDVIEEYV 265 Query: 247 NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRI 306 N K P+++ DTAG+R + E + V++S +++ + +++L+++ P QD + Sbjct: 266 NIKGVPLKLIDTAGIRDTDDVVEKI---GVERSKKALEEADLVLLVLNSSEPLTDQDRTL 322 Query: 307 VDSVFNTGHAVVLALNKWDM 326 +D N+ ++ LNK D+ Sbjct: 323 LDISQNSNR--IILLNKTDL 340 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 42/117 (35%), Positives = 68/117 (58%), Gaps = 3/117 (2%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L++++ A+V + G TRD + I GV ++DTAGI D + Sbjct: 226 AIIGRPNVGKSSLLNNLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRDTDD 285 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + K ++++ A+ EA L+L +++S +T D + + N II+ NK D Sbjct: 286 V-VEKIGVERSKKALEEADLVLLVLNSSEPLTDQDRTLLDISQNSN--RIILLNKTD 339 >gi|15928297|ref|NP_375830.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus N315] gi|21284359|ref|NP_647447.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus MW2] gi|49484907|ref|YP_042131.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus MRSA252] gi|88196667|ref|YP_501498.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148269143|ref|YP_001248086.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus JH9] gi|150395225|ref|YP_001317900.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus JH1] gi|221141513|ref|ZP_03566006.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253316838|ref|ZP_04840051.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253730397|ref|ZP_04864562.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253733841|ref|ZP_04868006.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus TCH130] gi|257424194|ref|ZP_05600623.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus 55/2053] gi|257426871|ref|ZP_05603273.1| tRNA modification GTPase trmE [Staphylococcus aureus subsp. aureus 65-1322] gi|257429507|ref|ZP_05605894.1| tRNA modification GTPase mnmE [Staphylococcus aureus subsp. aureus 68-397] gi|257432154|ref|ZP_05608517.1| tRNA modification GTPase trmE [Staphylococcus aureus subsp. aureus E1410] gi|257435115|ref|ZP_05611166.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus M876] gi|257793536|ref|ZP_05642515.1| tRNA modification GTPase TrmE [Staphylococcus aureus A9781] gi|258411158|ref|ZP_05681437.1| tRNA modification GTPase trmE [Staphylococcus aureus A9763] gi|258420938|ref|ZP_05683872.1| tRNA modification GTPase TrmE [Staphylococcus aureus A9719] gi|258438577|ref|ZP_05689800.1| tRNA modification GTPase trmE [Staphylococcus aureus A9299] gi|258443967|ref|ZP_05692305.1| tRNA modification GTPase mnmE [Staphylococcus aureus A8115] gi|258446217|ref|ZP_05694377.1| tRNA modification GTPase mnmE [Staphylococcus aureus A6300] gi|258449124|ref|ZP_05697230.1| tRNA modification GTPase trmE [Staphylococcus aureus A6224] gi|258454398|ref|ZP_05702366.1| tRNA modification GTPase TrmE [Staphylococcus aureus A5937] gi|269204349|ref|YP_003283618.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus ED98] gi|282894277|ref|ZP_06302507.1| tRNA modification GTPase TrmE [Staphylococcus aureus A8117] gi|282907045|ref|ZP_06314893.1| tRNA modification GTPase trmE [Staphylococcus aureus subsp. aureus Btn1260] gi|282910024|ref|ZP_06317832.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus WW2703/97] gi|282912272|ref|ZP_06320068.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus WBG10049] gi|282912912|ref|ZP_06320704.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus M899] gi|282918066|ref|ZP_06325816.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus D139] gi|282921288|ref|ZP_06329006.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus C427] gi|282922540|ref|ZP_06330230.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus C101] gi|282927748|ref|ZP_06335362.1| tRNA modification GTPase TrmE [Staphylococcus aureus A10102] gi|283767788|ref|ZP_06340703.1| tRNA modification GTPase mnmE [Staphylococcus aureus subsp. aureus H19] gi|283959482|ref|ZP_06376923.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus A017934/97] gi|293497965|ref|ZP_06665819.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus 58-424] gi|293511555|ref|ZP_06670249.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus M809] gi|293550164|ref|ZP_06672836.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus M1015] gi|295406862|ref|ZP_06816666.1| tRNA modification GTPase TrmE [Staphylococcus aureus A8819] gi|295429295|ref|ZP_06821917.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus EMRSA16] gi|296275689|ref|ZP_06858196.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus MR1] gi|297209454|ref|ZP_06925852.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297245897|ref|ZP_06929759.1| tRNA modification GTPase TrmE [Staphylococcus aureus A8796] gi|297589203|ref|ZP_06947844.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus MN8] gi|300911478|ref|ZP_07128927.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus TCH70] gi|304379946|ref|ZP_07362675.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|54039754|sp|P66973|MNME_STAAW RecName: Full=tRNA modification GTPase mnmE gi|54042258|sp|P66972|MNME_STAAN RecName: Full=tRNA modification GTPase mnmE gi|73919889|sp|Q6GD92|MNME_STAAR RecName: Full=tRNA modification GTPase mnmE gi|122538496|sp|Q2FUQ2|MNME_STAA8 RecName: Full=tRNA modification GTPase mnmE gi|189036211|sp|A6U595|MNME_STAA2 RecName: Full=tRNA modification GTPase mnmE gi|189036212|sp|A5IWD7|MNME_STAA9 RecName: Full=tRNA modification GTPase mnmE gi|13702669|dbj|BAB43809.1| possible thiophene and furan oxidation protein [Staphylococcus aureus subsp. aureus N315] gi|21205803|dbj|BAB96495.1| possible thiophene and furan oxidation protein [Staphylococcus aureus subsp. aureus MW2] gi|49243036|emb|CAG41770.1| probable tRNA modification GTPase [Staphylococcus aureus subsp. aureus MRSA252] gi|87204225|gb|ABD32035.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147742212|gb|ABQ50510.1| tRNA modification GTPase trmE [Staphylococcus aureus subsp. aureus JH9] gi|149947677|gb|ABR53613.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus JH1] gi|253725877|gb|EES94606.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253728144|gb|EES96873.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus TCH130] gi|257273212|gb|EEV05314.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus 55/2053] gi|257276502|gb|EEV07953.1| tRNA modification GTPase trmE [Staphylococcus aureus subsp. aureus 65-1322] gi|257279988|gb|EEV10575.1| tRNA modification GTPase mnmE [Staphylococcus aureus subsp. aureus 68-397] gi|257283033|gb|EEV13165.1| tRNA modification GTPase trmE [Staphylococcus aureus subsp. aureus E1410] gi|257285711|gb|EEV15827.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus M876] gi|257787508|gb|EEV25848.1| tRNA modification GTPase TrmE [Staphylococcus aureus A9781] gi|257840043|gb|EEV64508.1| tRNA modification GTPase trmE [Staphylococcus aureus A9763] gi|257843128|gb|EEV67543.1| tRNA modification GTPase TrmE [Staphylococcus aureus A9719] gi|257848136|gb|EEV72128.1| tRNA modification GTPase trmE [Staphylococcus aureus A9299] gi|257850851|gb|EEV74795.1| tRNA modification GTPase mnmE [Staphylococcus aureus A8115] gi|257855043|gb|EEV77986.1| tRNA modification GTPase mnmE [Staphylococcus aureus A6300] gi|257857557|gb|EEV80452.1| tRNA modification GTPase trmE [Staphylococcus aureus A6224] gi|257863492|gb|EEV86252.1| tRNA modification GTPase TrmE [Staphylococcus aureus A5937] gi|262076639|gb|ACY12612.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus ED98] gi|269942298|emb|CBI50713.1| probable tRNA modification GTPase [Staphylococcus aureus subsp. aureus TW20] gi|282314761|gb|EFB45147.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus C101] gi|282315703|gb|EFB46087.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus C427] gi|282318351|gb|EFB48711.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus D139] gi|282323012|gb|EFB53331.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus M899] gi|282323968|gb|EFB54284.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus WBG10049] gi|282326090|gb|EFB56395.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus WW2703/97] gi|282329944|gb|EFB59465.1| tRNA modification GTPase trmE [Staphylococcus aureus subsp. aureus Btn1260] gi|282590508|gb|EFB95586.1| tRNA modification GTPase TrmE [Staphylococcus aureus A10102] gi|282763322|gb|EFC03452.1| tRNA modification GTPase TrmE [Staphylococcus aureus A8117] gi|283461667|gb|EFC08751.1| tRNA modification GTPase mnmE [Staphylococcus aureus subsp. aureus H19] gi|283471926|emb|CAQ51137.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus ST398] gi|283789074|gb|EFC27901.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus A017934/97] gi|285818375|gb|ADC38862.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Staphylococcus aureus 04-02981] gi|290919211|gb|EFD96287.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus M1015] gi|291096896|gb|EFE27154.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus 58-424] gi|291465513|gb|EFF08045.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus M809] gi|294968327|gb|EFG44352.1| tRNA modification GTPase TrmE [Staphylococcus aureus A8819] gi|295127054|gb|EFG56698.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus EMRSA16] gi|296885915|gb|EFH24850.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297177262|gb|EFH36515.1| tRNA modification GTPase TrmE [Staphylococcus aureus A8796] gi|297577714|gb|EFH96427.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus MN8] gi|300887657|gb|EFK82853.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus TCH70] gi|302334326|gb|ADL24519.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus JKD6159] gi|302752589|gb|ADL66766.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304341526|gb|EFM07436.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312436861|gb|ADQ75932.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus TCH60] gi|312831050|emb|CBX35892.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129541|gb|EFT85533.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus CGS03] gi|315195224|gb|EFU25612.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus CGS00] gi|323439701|gb|EGA97419.1| tRNA modification GTPase TrmE [Staphylococcus aureus O11] gi|323443274|gb|EGB00891.1| tRNA modification GTPase TrmE [Staphylococcus aureus O46] gi|329315432|gb|AEB89845.1| tRNA modification GTPase mnmE [Staphylococcus aureus subsp. aureus T0131] gi|329725659|gb|EGG62138.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus 21172] gi|329731690|gb|EGG68050.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus 21189] gi|329732386|gb|EGG68736.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus 21193] Length = 459 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 42/116 (36%), Positives = 70/116 (60%), Gaps = 3/116 (2%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PNVGKS++ N L++ A+V G TRD L + GV +VDTAGI + ++ Sbjct: 226 IVGKPNVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRETEDI 285 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + K +++ A+++A LILF++++ +T D+ + + KN +I++ NKMD Sbjct: 286 -VEKIGVERSRKALSQADLILFVLNNNEALTQEDYTLYEVV--KNEDVIVIVNKMD 338 Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 47/177 (26%), Positives = 93/177 (52%), Gaps = 14/177 (7%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L +VG+PNVGKS+++N L+ N+ + +G TRD + N + P+ + D Sbjct: 216 KIMREGLSTVIVGKPNVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVD 275 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ I E + V++S +++ + + +L+ ++D + + V N V Sbjct: 276 TAGIRETEDIVEKI---GVERSRKALSQADLILFVLNNNEALTQEDYTLYEVVKN--EDV 330 Query: 318 VLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEI 374 ++ +NK D L Q++ +K++ IGD + S EG+D+L + + ++ Sbjct: 331 IVIVNKMD-------LEQNIDINEVKDM--IGDTPLIQTSMLKQEGIDELEIQIRDL 378 >gi|326571730|gb|EGE21743.1| tRNA modification GTPase TrmE [Moraxella catarrhalis BC8] gi|326574355|gb|EGE24298.1| tRNA modification GTPase TrmE [Moraxella catarrhalis CO72] Length = 466 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 50/175 (28%), Positives = 87/175 (49%), Gaps = 23/175 (13%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 + + + G+PN GKS+L+NRL G R + +G TRD++ + + + DTAG+RK Sbjct: 221 VHVVLAGKPNAGKSSLLNRLSGTERAIVTEIAGTTRDTLEETLILNGLTVHLTDTAGLRK 280 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTG--------- 314 + +E+ +K++ ++R + +++ D T E L + D +F G Sbjct: 281 TD---DHVEKIGIKRAFDAIRQADVLMMVYDVTT--ETDPLALADQLFCEGVTEDVGDII 335 Query: 315 -HAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLM 368 ++L NK D++ K L TK+ L +Y +S TGEGLD+L+ Sbjct: 336 RQKLILVANKSDLLISKPVLQVSCETKSAPKL-----VY---VSCETGEGLDELI 382 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 54/191 (28%), Positives = 85/191 (44%), Gaps = 40/191 (20%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + + G PN GKS+L NRL + A+V G TRD L I+NG+ ++ DTAG+ Sbjct: 223 VVLAGKPNAGKSSLLNRLSGTERAIVTEIAGTTRDTLEETLILNGLTVHLTDTAGL---- 278 Query: 65 NCSIAKQMNDQTEL--------AINEAHLILFLIDSKAGITPYDHA-----------ITS 105 ++ +D E AI +A +++ + D P A + Sbjct: 279 -----RKTDDHVEKIGIKRAFDAIRQADVLMMVYDVTTETDPLALADQLFCEGVTEDVGD 333 Query: 106 FLRKKNIPIIIVSNKMDTRIAQRNFYEIYSLDFK---EIVEISAEHDLGTSELHSVIFKI 162 +R+K +I+V+NK D I++ S + K ++V +S E G EL +I Sbjct: 334 IIRQK---LILVANKSDLLISKPVLQ--VSCETKSAPKLVYVSCETGEGLDEL----IEI 384 Query: 163 FKQKYPNHPLE 173 QK HP E Sbjct: 385 LTQKVGFHPPE 395 >gi|328952573|ref|YP_004369907.1| tRNA modification GTPase mnmE [Desulfobacca acetoxidans DSM 11109] gi|328452897|gb|AEB08726.1| tRNA modification GTPase mnmE [Desulfobacca acetoxidans DSM 11109] Length = 456 Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 52/193 (26%), Positives = 103/193 (53%), Gaps = 17/193 (8%) Query: 183 ESPKENITSEGKSSVKN--ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 E+ + IT+ +S + + + L++ + GRPNVGKS+L+NRLL +R + G TRD Sbjct: 198 EALESEITALCQSYAQGRMLRQGLQVVLAGRPNVGKSSLLNRLLQTDRAIVTDIPGTTRD 257 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 ++ + + P+ + DTAG+R + E + ++++ + ++ + + LLDA+ P++ Sbjct: 258 VIAENLVIQGLPVCLLDTAGLRPAQNLVEEI---GIQRTQEHLQQADLVLYLLDASQPWQ 314 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 +D + ++ + VVL +K++L + L+ AI P ++ IS T Sbjct: 315 VEDEPQLQALRDQSILVVL---------NKIDLPRVLQPAAI---PSAWPHHLIEISALT 362 Query: 361 GEGLDDLMVSVLE 373 GEG+ L ++ + Sbjct: 363 GEGIPALKEAIFQ 375 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 52/159 (32%), Positives = 86/159 (54%), Gaps = 8/159 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + + G PNVGKS+L NRL++ A+V + PG TRD + +I G+ ++DTAG+ + Sbjct: 223 VVLAGRPNVGKSSLLNRLLQTDRAIVTDIPGTTRDVIAENLVIQGLPVCLLDTAGLRPAQ 282 Query: 65 NCSIAKQMNDQ-TELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD- 122 N + +++ Q T+ + +A L+L+L+D+ D LR ++ I++V NK+D Sbjct: 283 N--LVEEIGIQRTQEHLQQADLVLYLLDASQPWQVEDEPQLQALRDQS--ILVVLNKIDL 338 Query: 123 TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 R+ Q I S ++EISA G L IF+ Sbjct: 339 PRVLQPA--AIPSAWPHHLIEISALTGEGIPALKEAIFQ 375 >gi|327191200|gb|EGE58243.1| GTP-binding protein in thiophene and furan oxidation [Rhizobium etli CNPAF512] Length = 437 Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 57/224 (25%), Positives = 111/224 (49%), Gaps = 30/224 (13%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + + I GAPN GKS+L N L K+++A+V + G TRD L+ I+G + + DTAG+ + Sbjct: 217 FKVVIAGAPNAGKSSLMNALAKREVAIVTDIAGTTRDVLHVDLDIDGYLVKLYDTAGLRE 276 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 ++ + + + +A+ +A L+L L+D I P D ++ +P + V K D Sbjct: 277 AED-RVEIEGVRRARVALRDADLVLLLVDMSDPIVPADL-------EQALPHVTVGTKKD 328 Query: 123 TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 + Y++ +IS G EL +I ++ +++ L I + +R++ Sbjct: 329 LIETGSDRYDL---------QISTATGDGLPELRQLIGRVVAERFGGLSL-AIPSRQRHK 378 Query: 183 ESPKENIT------SEGKSSVKNISKPLRIA------VVGRPNV 214 +S + + S+ +S++ ++ LR+A + GR +V Sbjct: 379 DSLAKCLAALDAAISDSAASLELRTEQLRLAAEYLGRITGRVDV 422 Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 29/113 (25%), Positives = 61/113 (53%), Gaps = 3/113 (2%) Query: 192 EGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNH 251 E S+ + I ++ + G PN GKS+L+N L + +G TRD + + + + Sbjct: 205 EAASAGEIIRDGFKVVIAGAPNAGKSSLMNALAKREVAIVTDIAGTTRDVLHVDLDIDGY 264 Query: 252 PIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 ++++DTAG+R+ + +E + V+++ ++R + ++L+D + P DL Sbjct: 265 LVKLYDTAGLREAE---DRVEIEGVRRARVALRDADLVLLLVDMSDPIVPADL 314 >gi|317499140|ref|ZP_07957417.1| GTP-binding protein Era [Lachnospiraceae bacterium 5_1_63FAA] gi|316893553|gb|EFV15758.1| GTP-binding protein Era [Lachnospiraceae bacterium 5_1_63FAA] Length = 301 Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 54/170 (31%), Positives = 87/170 (51%), Gaps = 15/170 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIING----VIFNIVDTAGI 60 + +G PNVGKSTL NRL+ +K+A+ + P TR+R+ Q + +IF +DT GI Sbjct: 10 VTFIGRPNVGKSTLMNRLIGQKIAITSSKPQTTRNRI--QTVYTDERGQIIF--LDTPGI 65 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 KN + M E +NE ++L+L++ I + I L K PII+V NK Sbjct: 66 NRAKN-KLGNYMLQVAERTLNEVDVVLWLVEPSTFIGGGEKYIIEQLSKIKTPIILVINK 124 Query: 121 MDTRIAQRNFYEIYS-----LDFKEIVEISAEHDLGTSELHSVIFKIFKQ 165 +DT + +++ E +F EI+ +SA T ++ I+K + Sbjct: 125 IDT-VEEKDILEAIDTYKDVCEFAEIIPVSALKGKNTDDVIDSIYKYLDE 173 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/166 (24%), Positives = 85/166 (51%), Gaps = 8/166 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 + +GRPNVGKSTL+NRL+G +T S+ TR+ + + + I DT G+ + Sbjct: 10 VTFIGRPNVGKSTLMNRLIGQKIAITSSKPQTTRNRIQTVYTDERGQIIFLDTPGI---N 66 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 R L ++ + +++ + + L++ + + I++ + ++L +NK D Sbjct: 67 RAKNKLGNYMLQVAERTLNEVDVVLWLVEPSTFIGGGEKYIIEQLSKIKTPIILVINKID 126 Query: 326 MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSV 371 V +K ++L+ + T K++ + +I +S G+ DD++ S+ Sbjct: 127 TVEEK-DILEAIDT--YKDVCEFAEII--PVSALKGKNTDDVIDSI 167 >gi|257885581|ref|ZP_05665234.1| tRNA modification GTPase mnmE [Enterococcus faecium 1,231,501] gi|293553541|ref|ZP_06674168.1| tRNA modification GTPase TrmE [Enterococcus faecium E1039] gi|257821437|gb|EEV48567.1| tRNA modification GTPase mnmE [Enterococcus faecium 1,231,501] gi|291602296|gb|EFF32521.1| tRNA modification GTPase TrmE [Enterococcus faecium E1039] Length = 465 Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 49/170 (28%), Positives = 94/170 (55%), Gaps = 14/170 (8%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L A++GRPNVGKS+L+N LL + + +G TRD + N + P+++ D Sbjct: 222 KVLREGLSTAIIGRPNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLID 281 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ + E + V++S +++ + +++L+ + P +D +++++ +G Sbjct: 282 TAGIRETEDVVERI---GVERSRKALAEADLILLVLNQSEPLTAEDEQLLEA--TSGLKR 336 Query: 318 VLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDL 367 ++ LNK D+ + L Q+ K I+N P + +IS +GLD L Sbjct: 337 IILLNKTDLPA---QLEQEKLKKLIENEP------VFSISVAKNDGLDRL 377 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 89/165 (53%), Gaps = 13/165 (7%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 + AI+G PNVGKS+L N L++++ A+V + G TRD + + GV ++DTAGI + Sbjct: 229 STAIIGRPNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRET 288 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAI---TSFLRKKNIPIIIVSNK 120 ++ + + +++ A+ EA LIL +++ +T D + TS L++ II+ NK Sbjct: 289 EDV-VERIGVERSRKALAEADLILLVLNQSEPLTAEDEQLLEATSGLKR-----IILLNK 342 Query: 121 MD--TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 D ++ Q ++ ++ + + IS + G L S I +F Sbjct: 343 TDLPAQLEQEKLKKL--IENEPVFSISVAKNDGLDRLESAISDLF 385 >gi|226311653|ref|YP_002771547.1| GTP-binding protein [Brevibacillus brevis NBRC 100599] gi|226094601|dbj|BAH43043.1| probable GTP-binding protein [Brevibacillus brevis NBRC 100599] Length = 305 Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 52/180 (28%), Positives = 88/180 (48%), Gaps = 9/180 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 ++IVG PNVGKSTL N +V K+A++ N P TR+++ +DT GI + Sbjct: 15 VSIVGRPNVGKSTLLNHIVGHKIAIMSNKPQTTRNKITAVHTTEEGQIIFLDTPGIHKPQ 74 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + M E +NE L+LF++D+ D I L++ P+ +V NK+D Sbjct: 75 -SKLGNYMVSVAENTLNEVDLVLFVVDATEKRGAGDDYIIERLKQVKTPVFLVINKIDKV 133 Query: 125 IAQR------NFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 + ++ ++Y DFK+IV ISA T+ L I ++ +P + + ++ Sbjct: 134 HPEALLPIIDDYRKLY--DFKQIVPISALEGNNTASLQQAILGEMEEGPMYYPADQVTDH 191 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 37/135 (27%), Positives = 66/135 (48%), Gaps = 5/135 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +++VGRPNVGKSTL+N ++G+ + ++ TR+ ++ + I DT G+ KP Sbjct: 15 VSIVGRPNVGKSTLLNHIVGHKIAIMSNKPQTTRNKITAVHTTEEGQIIFLDTPGIHKPQ 74 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L V + ++ + + ++DAT D I++ + V L +NK D Sbjct: 75 ---SKLGNYMVSVAENTLNEVDLVLFVVDATEKRGAGDDYIIERLKQVKTPVFLVINKID 131 Query: 326 MVSDK--LNLLQDLR 338 V + L ++ D R Sbjct: 132 KVHPEALLPIIDDYR 146 >gi|33332419|gb|AAQ11417.1| GTP-binding protein ERA [Yersinia enterocolitica] Length = 177 Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 51/169 (30%), Positives = 85/169 (50%), Gaps = 20/169 (11%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYG-------QAIINGVIFNIVDT 57 IAIVG PNVGKSTL N L+ +K+++ P TR R+ G QAI VDT Sbjct: 12 IAIVGRPNVGKSTLLNELLGQKISITSRKPQTTRHRIMGIHTEGPYQAI-------YVDT 64 Query: 58 AGIADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIV 117 G+ + +I + MN +I + L++F+++ T D + + LR P+++ Sbjct: 65 PGLHIEEKRAINRLMNRAASSSIGDVELVIFVVEG-TNWTADDEMVVNKLRSLQCPVLLA 123 Query: 118 SNKMD-----TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 NK+D T++ + ++F ++V ISAE + + S++ K Sbjct: 124 INKVDNVTDKTKLLPHIQFLSQQMNFLDVVPISAEKGMNVDTIASIVRK 172 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 43/130 (33%), Positives = 64/130 (49%), Gaps = 5/130 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMR-KP 264 IA+VGRPNVGKSTL+N LLG +T + TR + + DT G+ + Sbjct: 12 IAIVGRPNVGKSTLLNELLGQKISITSRKPQTTRHRIMGIHTEGPYQAIYVDTPGLHIEE 71 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 R L + S+ V E I +++ T + D +V+ + + V+LA+NK Sbjct: 72 KRAINRLMNRAASSSIGDV---ELVIFVVEGT-NWTADDEMVVNKLRSLQCPVLLAINKV 127 Query: 325 DMVSDKLNLL 334 D V+DK LL Sbjct: 128 DNVTDKTKLL 137 >gi|170761539|ref|YP_001788258.1| GTP-binding protein Era [Clostridium botulinum A3 str. Loch Maree] gi|226741201|sp|B1KZM3|ERA_CLOBM RecName: Full=GTPase Era gi|169408528|gb|ACA56939.1| GTP-binding protein Era [Clostridium botulinum A3 str. Loch Maree] Length = 296 Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 55/183 (30%), Positives = 95/183 (51%), Gaps = 10/183 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + IVG PNVGKSTL N ++K+K+++V P TR+ + + VDT GI K Sbjct: 7 VTIVGRPNVGKSTLLNAIMKEKLSIVSCRPQTTRNNIQTILTEDNYQLVFVDTPGIHKPK 66 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD-- 122 + + + M A+ + L+LFLI+ D I L++ +P+ +V NK+D Sbjct: 67 H-KLGEYMVKSASDAMKDVDLVLFLINPDEKPGRGDLFIIEQLKEVKVPVFLVLNKIDEN 125 Query: 123 --TRIAQ--RNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEM-IEN 177 ++A+ + + E+ ++F+EI+ ISA L ++FK + +P +M I+ Sbjct: 126 PQEKVAETLKTYSEL--MEFEEIIPISALKGKNIDLLKELMFKYIPEGPQYYPEDMIIDQ 183 Query: 178 NKR 180 N+R Sbjct: 184 NER 186 Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 33/120 (27%), Positives = 59/120 (49%), Gaps = 3/120 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 + +VGRPNVGKSTL+N ++ + + TR+++ N+ + DT G+ KP Sbjct: 7 VTIVGRPNVGKSTLLNAIMKEKLSIVSCRPQTTRNNIQTILTEDNYQLVFVDTPGIHKPK 66 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + VK + +++ + + L++ + DL I++ + V L LNK D Sbjct: 67 H---KLGEYMVKSASDAMKDVDLVLFLINPDEKPGRGDLFIIEQLKEVKVPVFLVLNKID 123 >gi|170754569|ref|YP_001782578.1| GTP-binding protein Era [Clostridium botulinum B1 str. Okra] gi|226741200|sp|B1ILK9|ERA_CLOBK RecName: Full=GTPase Era gi|169119781|gb|ACA43617.1| GTP-binding protein Era [Clostridium botulinum B1 str. Okra] gi|322807262|emb|CBZ04836.1| GTP-binding protein Era [Clostridium botulinum H04402 065] Length = 296 Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 55/183 (30%), Positives = 95/183 (51%), Gaps = 10/183 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + IVG PNVGKSTL N ++K+K+++V P TR+ + + VDT GI K Sbjct: 7 VTIVGRPNVGKSTLLNAIMKEKLSIVSCRPQTTRNNIQTILTEDNYQLVFVDTPGIHKPK 66 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD-- 122 + + + M A+ + L+LFLI+ D I L++ +P+ +V NK+D Sbjct: 67 H-KLGEYMVKSASDAMKDVDLVLFLINPDEKPGRGDLFIIEQLKEVKVPVFLVLNKIDEN 125 Query: 123 --TRIAQ--RNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEM-IEN 177 ++A+ + + E+ ++F+EI+ ISA L ++FK + +P +M I+ Sbjct: 126 PQEKVAETLKTYSEL--MEFEEIIPISALKGKNIDLLKELMFKYIPEGPQYYPEDMIIDQ 183 Query: 178 NKR 180 N+R Sbjct: 184 NER 186 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 33/120 (27%), Positives = 59/120 (49%), Gaps = 3/120 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 + +VGRPNVGKSTL+N ++ + + TR+++ N+ + DT G+ KP Sbjct: 7 VTIVGRPNVGKSTLLNAIMKEKLSIVSCRPQTTRNNIQTILTEDNYQLVFVDTPGIHKPK 66 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + VK + +++ + + L++ + DL I++ + V L LNK D Sbjct: 67 H---KLGEYMVKSASDAMKDVDLVLFLINPDEKPGRGDLFIIEQLKEVKVPVFLVLNKID 123 >gi|125718082|ref|YP_001035215.1| tRNA modification GTPase TrmE [Streptococcus sanguinis SK36] gi|166234828|sp|A3CNB0|MNME_STRSV RecName: Full=tRNA modification GTPase mnmE gi|125497999|gb|ABN44665.1| tRNA modification GTPase, possibly iron-binding, putative [Streptococcus sanguinis SK36] Length = 457 Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 74/120 (61%), Gaps = 5/120 (4%) Query: 207 AVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSR 266 A++GRPNVGKS+L+N LL ++ + G TRD + N K P+++ DTAG+R+ Sbjct: 227 AIIGRPNVGKSSLLNNLLREDKAIVTDIEGTTRDVIEEYVNIKGLPLKLIDTAGIRETDD 286 Query: 267 ITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 + +EQ V++S ++++ + +++L+A+ P QD ++++ ++ V+ LNK D+ Sbjct: 287 L---VEQIGVERSKKALQEADLVLLVLNASEPLTDQDRQLLEISKDSNRIVL--LNKTDL 341 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 46/161 (28%), Positives = 86/161 (53%), Gaps = 14/161 (8%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+++ A+V + G TRD + I G+ ++DTAGI + + Sbjct: 227 AIIGRPNVGKSSLLNNLLREDKAIVTDIEGTTRDVIEEYVNIKGLPLKLIDTAGIRETDD 286 Query: 66 CSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +Q+ ++++ A+ EA L+L ++++ +T D + + N I++ NK D Sbjct: 287 --LVEQIGVERSKKALQEADLVLLVLNASEPLTDQDRQLLEISKDSN--RIVLLNKTD-- 340 Query: 125 IAQRNFYEIYSLDF--KEIVEISAEHDLGTSELHSVIFKIF 163 E LD ++++IS H+ ++ I ++F Sbjct: 341 -----LEEKIELDLLPTDVIKISVLHNQNIDKIEERINQLF 376 >gi|158320287|ref|YP_001512794.1| GTP-binding protein Era [Alkaliphilus oremlandii OhILAs] gi|189037250|sp|A8MG70|ERA_ALKOO RecName: Full=GTPase Era gi|158140486|gb|ABW18798.1| GTP-binding protein Era [Alkaliphilus oremlandii OhILAs] Length = 295 Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 55/179 (30%), Positives = 90/179 (50%), Gaps = 9/179 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIV--DTAGIAD 62 + I+G PNVGKSTL N+++ +K+A++ + P TR+++ Q + + IV DT GI Sbjct: 8 VTIIGRPNVGKSTLMNKIIGEKIAIMSDKPQTTRNKI--QCVYTQKDYQIVFLDTPGIHK 65 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 K+ + + M + E +LF++D I P D I L+ + PII+V NK+D Sbjct: 66 PKH-KLGQYMVKIATETLKEVDAVLFVVDEGNSIGPGDQYIIDQLQGIDTPIILVLNKID 124 Query: 123 TRIAQ--RNFYEIYSLD--FKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 A+ + Y+ Y FK I+ ISA L ++I + + P MI + Sbjct: 125 KMNAENLNHLYDQYEKTGIFKHIIGISALEGANVGNLINLIVQYLPEGPKYFPEHMITD 183 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 39/132 (29%), Positives = 69/132 (52%), Gaps = 4/132 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 + ++GRPNVGKSTL+N+++G + + TR+ + + K++ I DT G+ KP Sbjct: 8 VTIIGRPNVGKSTLMNKIIGEKIAIMSDKPQTTRNKIQCVYTQKDYQIVFLDTPGIHKPK 67 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L Q VK + ++++ + + ++D D I+D + ++L LNK D Sbjct: 68 H---KLGQYMVKIATETLKEVDAVLFVVDEGNSIGPGDQYIIDQLQGIDTPIILVLNKID 124 Query: 326 -MVSDKLNLLQD 336 M ++ LN L D Sbjct: 125 KMNAENLNHLYD 136 >gi|15894577|ref|NP_347926.1| GTP-binding protein Era [Clostridium acetobutylicum ATCC 824] gi|21263597|sp|Q97JI5|ERA_CLOAB RecName: Full=GTPase Era gi|15024224|gb|AAK79266.1|AE007641_12 ERA GTPase [Clostridium acetobutylicum ATCC 824] gi|325508709|gb|ADZ20345.1| GTP-binding protein Era [Clostridium acetobutylicum EA 2018] Length = 296 Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 51/179 (28%), Positives = 94/179 (52%), Gaps = 13/179 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNI--VDTAGIAD 62 + I+G PNVGKSTL N ++ +K+++V + P TR+ + Q I+ G + I VDT G+ + Sbjct: 7 VTIIGRPNVGKSTLLNHIMGEKLSIVSSKPQTTRNNI--QTILTGEEYQIVFVDTPGMHN 64 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 ++ + + M + ++NE + LF+ + D I L+ +P+ +V NK+D Sbjct: 65 PRH-KLGEYMVKVAKESMNEVDVALFVTTPDVEVKRGDLHILEQLKSAKVPVFLVVNKID 123 Query: 123 TRIAQR------NFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 +R N+ E + +F+EI+ ISA+ +L ++ K + +P +MI Sbjct: 124 ETTEERLAATLKNYSEAF--EFQEIIPISAQKGKNVDKLIELMVKHLNEGPKYYPDDMI 180 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 64/125 (51%), Gaps = 3/125 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 + ++GRPNVGKSTL+N ++G + S+ TR+++ + + I DT GM P Sbjct: 7 VTIIGRPNVGKSTLLNHIMGEKLSIVSSKPQTTRNNIQTILTGEEYQIVFVDTPGMHNPR 66 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + VK + +S+ + + + + ++ DL I++ + + V L +NK D Sbjct: 67 H---KLGEYMVKVAKESMNEVDVALFVTTPDVEVKRGDLHILEQLKSAKVPVFLVVNKID 123 Query: 326 MVSDK 330 +++ Sbjct: 124 ETTEE 128 >gi|257453601|ref|ZP_05618891.1| GTP-binding protein Era [Enhydrobacter aerosaccus SK60] gi|257449059|gb|EEV24012.1| GTP-binding protein Era [Enhydrobacter aerosaccus SK60] Length = 349 Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 54/178 (30%), Positives = 87/178 (48%), Gaps = 6/178 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N ++ +K+++ P TR R+ G + VDT GI + Sbjct: 52 VAIVGRPNVGKSTLMNHVLGQKLSITSRKPQTTRHRIMGILTNEQLQAIFVDTPGIHSRE 111 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I ++MN LA+ + +LF+IDS + D + + ++ +P+I V NK DT Sbjct: 112 VRAINERMNKAATLALADVDAVLFVIDSLKWVED-DELVFAKVQNLGVPVIAVINKSDTI 170 Query: 125 IAQRNFYEIY-----SLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 + + + + F +IV +SA EL VI K P + E + + Sbjct: 171 KDEAQLFALLQKLHDTQVFSDIVPVSALRAHNLDELVRVIGKHLPIAAPIYDAEQVTD 228 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/130 (30%), Positives = 66/130 (50%), Gaps = 5/130 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV-SISWNWKNHPIEIFDTAGMRKP 264 +A+VGRPNVGKSTL+N +LG +T + TR + I N + I DT G+ Sbjct: 52 VAIVGRPNVGKSTLMNHVLGQKLSITSRKPQTTRHRIMGILTNEQLQAI-FVDTPGIH-- 108 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 SR ++ ++ K + ++ + + ++D+ E +L + V N G V+ +NK Sbjct: 109 SREVRAINERMNKAATLALADVDAVLFVIDSLKWVEDDEL-VFAKVQNLGVPVIAVINKS 167 Query: 325 DMVSDKLNLL 334 D + D+ L Sbjct: 168 DTIKDEAQLF 177 >gi|167755185|ref|ZP_02427312.1| hypothetical protein CLORAM_00690 [Clostridium ramosum DSM 1402] gi|237734935|ref|ZP_04565416.1| tRNA modification GTPase mnmE [Mollicutes bacterium D7] gi|167705235|gb|EDS19814.1| hypothetical protein CLORAM_00690 [Clostridium ramosum DSM 1402] gi|229381711|gb|EEO31802.1| tRNA modification GTPase mnmE [Coprobacillus sp. D7] Length = 444 Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 43/116 (37%), Positives = 67/116 (57%), Gaps = 3/116 (2%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 I+G PNVGKS+L N L+++ A+V N G TRD + G I+GV+ N++DTAGI + + Sbjct: 222 IIGRPNVGKSSLLNALLREDKAIVTNIAGTTRDIVEGSISIDGVVLNMIDTAGIRETDDI 281 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + + EL I++A L+L +ID ++ D + ++ IIV NK D Sbjct: 282 IESMGVEKSKEL-IHQADLVLLVIDGSQSLSSEDMQLLEL--TEDATRIIVLNKAD 334 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 47/168 (27%), Positives = 91/168 (54%), Gaps = 16/168 (9%) Query: 197 VKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIF 256 +K + + ++ ++GRPNVGKS+L+N LL ++ + + +G TRD V S + + + Sbjct: 211 IKLVKEGIKTVIIGRPNVGKSSLLNALLREDKAIVTNIAGTTRDIVEGSISIDGVVLNMI 270 Query: 257 DTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHA 316 DTAG+R+ I ES+ V+KS + + + ++++D + +D+++++ + Sbjct: 271 DTAGIRETDDIIESM---GVEKSKELIHQADLVLLVIDGSQSLSSEDMQLLELTEDATRI 327 Query: 317 VVLALNKWD----------MVSDKLNLLQDLRTKAIKNLPQIGDIYIN 354 +V LNK D ++S K N + L T+ IK + ++G I N Sbjct: 328 IV--LNKADQGTKVDLDGIVISAKDNQISTL-TEEIKKMFELGKIIDN 372 >gi|69247494|ref|ZP_00604364.1| tRNA modification GTPase TrmE:Small GTP-binding protein domain:GTP-binding [Enterococcus faecium DO] gi|68194819|gb|EAN09294.1| tRNA modification GTPase TrmE:Small GTP-binding protein domain:GTP-binding [Enterococcus faecium DO] Length = 494 Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 49/170 (28%), Positives = 94/170 (55%), Gaps = 14/170 (8%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L A++GRPNVGKS+L+N LL + + +G TRD + N + P+++ D Sbjct: 251 KVLREGLSTAIIGRPNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLID 310 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ + E + V++S +++ + +++L+ + P +D +++++ +G Sbjct: 311 TAGIRETEDVVERI---GVERSRKALAEADLILLVLNQSEPLTAEDEQLLEA--TSGLKR 365 Query: 318 VLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDL 367 ++ LNK D+ + L Q+ K I+N P + +IS +GLD L Sbjct: 366 IILLNKTDLPA---QLEQEKLKKLIENEP------VFSISVAKNDGLDRL 406 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 89/165 (53%), Gaps = 13/165 (7%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 + AI+G PNVGKS+L N L++++ A+V + G TRD + + GV ++DTAGI + Sbjct: 258 STAIIGRPNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRET 317 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAI---TSFLRKKNIPIIIVSNK 120 ++ + + +++ A+ EA LIL +++ +T D + TS L++ II+ NK Sbjct: 318 EDV-VERIGVERSRKALAEADLILLVLNQSEPLTAEDEQLLEATSGLKR-----IILLNK 371 Query: 121 MD--TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 D ++ Q ++ ++ + + IS + G L S I +F Sbjct: 372 TDLPAQLEQEKLKKL--IENEPVFSISVAKNDGLDRLESAISDLF 414 >gi|257878640|ref|ZP_05658293.1| tRNA modification GTPase mnmE [Enterococcus faecium 1,230,933] gi|257881306|ref|ZP_05660959.1| tRNA modification GTPase mnmE [Enterococcus faecium 1,231,502] gi|257893099|ref|ZP_05672752.1| tRNA modification GTPase mnmE [Enterococcus faecium 1,231,408] gi|258615276|ref|ZP_05713046.1| tRNA modification GTPase TrmE [Enterococcus faecium DO] gi|260558221|ref|ZP_05830417.1| tRNA modification GTPase mnmE [Enterococcus faecium C68] gi|293563245|ref|ZP_06677697.1| tRNA modification GTPase TrmE [Enterococcus faecium E1162] gi|293569165|ref|ZP_06680471.1| tRNA modification GTPase TrmE [Enterococcus faecium E1071] gi|294619739|ref|ZP_06699144.1| tRNA modification GTPase TrmE [Enterococcus faecium E1679] gi|294623753|ref|ZP_06702581.1| tRNA modification GTPase TrmE [Enterococcus faecium U0317] gi|257812868|gb|EEV41626.1| tRNA modification GTPase mnmE [Enterococcus faecium 1,230,933] gi|257816964|gb|EEV44292.1| tRNA modification GTPase mnmE [Enterococcus faecium 1,231,502] gi|257829478|gb|EEV56085.1| tRNA modification GTPase mnmE [Enterococcus faecium 1,231,408] gi|260075395|gb|EEW63701.1| tRNA modification GTPase mnmE [Enterococcus faecium C68] gi|291588134|gb|EFF19976.1| tRNA modification GTPase TrmE [Enterococcus faecium E1071] gi|291594009|gb|EFF25478.1| tRNA modification GTPase TrmE [Enterococcus faecium E1679] gi|291596707|gb|EFF27930.1| tRNA modification GTPase TrmE [Enterococcus faecium U0317] gi|291604784|gb|EFF34266.1| tRNA modification GTPase TrmE [Enterococcus faecium E1162] Length = 465 Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 49/170 (28%), Positives = 94/170 (55%), Gaps = 14/170 (8%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L A++GRPNVGKS+L+N LL + + +G TRD + N + P+++ D Sbjct: 222 KVLREGLSTAIIGRPNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLID 281 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ + E + V++S +++ + +++L+ + P +D +++++ +G Sbjct: 282 TAGIRETEDVVERI---GVERSRKALAEADLILLVLNQSEPLTAEDEQLLEA--TSGLKR 336 Query: 318 VLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDL 367 ++ LNK D+ + L Q+ K I+N P + +IS +GLD L Sbjct: 337 IILLNKTDLPA---QLEQEKLKKLIENEP------VFSISVAKNDGLDRL 377 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 89/165 (53%), Gaps = 13/165 (7%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 + AI+G PNVGKS+L N L++++ A+V + G TRD + + GV ++DTAGI + Sbjct: 229 STAIIGRPNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRET 288 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAI---TSFLRKKNIPIIIVSNK 120 ++ + + +++ A+ EA LIL +++ +T D + TS L++ II+ NK Sbjct: 289 EDV-VERIGVERSRKALAEADLILLVLNQSEPLTAEDEQLLEATSGLKR-----IILLNK 342 Query: 121 MD--TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 D ++ Q ++ ++ + + IS + G L S I +F Sbjct: 343 TDLPAQLEQEKLKKL--IENEPVFSISVAKNDGLDRLESAISDLF 385 >gi|49487489|ref|YP_044710.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus MSSA476] gi|73919890|sp|Q6G5W4|MNME_STAAS RecName: Full=tRNA modification GTPase mnmE gi|49245932|emb|CAG44413.1| probable tRNA modification GTPase [Staphylococcus aureus subsp. aureus MSSA476] Length = 459 Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 42/116 (36%), Positives = 70/116 (60%), Gaps = 3/116 (2%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PNVGKS++ N L++ A+V G TRD L + GV +VDTAGI + ++ Sbjct: 226 IVGKPNVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRETEDI 285 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + K +++ A+++A LILF++++ +T D+ + + KN +I++ NKMD Sbjct: 286 -VEKIGVERSRKALSQADLILFVLNNNEALTQEDYTLYEVV--KNEDVIVIVNKMD 338 Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 47/177 (26%), Positives = 93/177 (52%), Gaps = 14/177 (7%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L +VG+PNVGKS+++N L+ N+ + +G TRD + N + P+ + D Sbjct: 216 KIMREGLSTVIVGKPNVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVD 275 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ I E + V++S +++ + + +L+ ++D + + V N V Sbjct: 276 TAGIRETEDIVEKI---GVERSRKALSQADLILFVLNNNEALTQEDYTLYEVVKN--EDV 330 Query: 318 VLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEI 374 ++ +NK D L Q++ +K++ IGD + S EG+D+L + + ++ Sbjct: 331 IVIVNKMD-------LEQNIDINEVKDM--IGDTPLIQTSMLKQEGIDELEIQIRDL 378 >gi|309807783|ref|ZP_07701715.1| tRNA modification GTPase TrmE [Lactobacillus iners LactinV 01V1-a] gi|308168885|gb|EFO70971.1| tRNA modification GTPase TrmE [Lactobacillus iners LactinV 01V1-a] Length = 386 Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 46/130 (35%), Positives = 74/130 (56%), Gaps = 5/130 (3%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AIVG PNVGKS+L N L K++ A+V N G TRD L + G++ ++DTAGI + Sbjct: 228 AIVGRPNVGKSSLLNYLSKEEKAIVTNIAGTTRDTLEEYVSLKGILLKLIDTAGIRQTDD 287 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD--T 123 + K ++++ AI E+ L+L LI+S +T D + + K I++ NK D Sbjct: 288 I-VEKIGVERSKRAITESDLVLLLINSSEELTEEDQKLLELTQDK--KRIVILNKADQVA 344 Query: 124 RIAQRNFYEI 133 +I +++ +I Sbjct: 345 KITKKDIQKI 354 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 37/131 (28%), Positives = 75/131 (57%), Gaps = 5/131 (3%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + L A+VGRPNVGKS+L+N L + + + +G TRD++ + K +++ D Sbjct: 219 KVVRSGLATAIVGRPNVGKSSLLNYLSKEEKAIVTNIAGTTRDTLEEYVSLKGILLKLID 278 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ I E + V++S +++ + ++L++++ ++D ++++ + V Sbjct: 279 TAGIRQTDDIVEKI---GVERSKRAITESDLVLLLINSSEELTEEDQKLLELTQDKKRIV 335 Query: 318 VLALNKWDMVS 328 + LNK D V+ Sbjct: 336 I--LNKADQVA 344 >gi|261206911|ref|ZP_05921600.1| tRNA modification GTPase mnmE [Enterococcus faecium TC 6] gi|289567290|ref|ZP_06447669.1| tRNA modification GTPase TrmE [Enterococcus faecium D344SRF] gi|294616665|ref|ZP_06696436.1| tRNA modification GTPase TrmE [Enterococcus faecium E1636] gi|260078539|gb|EEW66241.1| tRNA modification GTPase mnmE [Enterococcus faecium TC 6] gi|289160909|gb|EFD08830.1| tRNA modification GTPase TrmE [Enterococcus faecium D344SRF] gi|291590485|gb|EFF22223.1| tRNA modification GTPase TrmE [Enterococcus faecium E1636] Length = 465 Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 49/170 (28%), Positives = 94/170 (55%), Gaps = 14/170 (8%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L A++GRPNVGKS+L+N LL + + +G TRD + N + P+++ D Sbjct: 222 KVLREGLSTAIIGRPNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLID 281 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ + E + V++S +++ + +++L+ + P +D +++++ +G Sbjct: 282 TAGIRETEDVVERI---GVERSRKALAEADLILLVLNQSEPLTAEDEQLLEA--TSGLKR 336 Query: 318 VLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDL 367 ++ LNK D+ + L Q+ K I+N P + +IS +GLD L Sbjct: 337 IILLNKTDLPA---QLEQEKLKKLIENEP------VFSISVAKNDGLDRL 377 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 89/165 (53%), Gaps = 13/165 (7%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 + AI+G PNVGKS+L N L++++ A+V + G TRD + + GV ++DTAGI + Sbjct: 229 STAIIGRPNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRET 288 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAI---TSFLRKKNIPIIIVSNK 120 ++ + + +++ A+ EA LIL +++ +T D + TS L++ II+ NK Sbjct: 289 EDV-VERIGVERSRKALAEADLILLVLNQSEPLTAEDEQLLEATSGLKR-----IILLNK 342 Query: 121 MD--TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 D ++ Q ++ ++ + + IS + G L S I +F Sbjct: 343 TDLPAQLEQEKLKKL--IENEPVFSISVAKNDGLDRLESAISDLF 385 >gi|258423240|ref|ZP_05686132.1| tRNA modification GTPase TrmE [Staphylococcus aureus A9635] gi|257846569|gb|EEV70591.1| tRNA modification GTPase TrmE [Staphylococcus aureus A9635] Length = 459 Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 42/116 (36%), Positives = 70/116 (60%), Gaps = 3/116 (2%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PNVGKS++ N L++ A+V G TRD L + GV +VDTAGI + ++ Sbjct: 226 IVGKPNVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRETEDI 285 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + K +++ A+++A LILF++++ +T D+ + + KN +I++ NKMD Sbjct: 286 -VEKIGVERSRKALSQADLILFVLNNNEALTQEDYTLYEVV--KNEDVIVIVNKMD 338 Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 47/177 (26%), Positives = 93/177 (52%), Gaps = 14/177 (7%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L +VG+PNVGKS+++N L+ N+ + +G TRD + N + P+ + D Sbjct: 216 KIMREGLSTVIVGKPNVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVD 275 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ I E + V++S +++ + + +L+ ++D + + V N V Sbjct: 276 TAGIRETEDIVEKI---GVERSRKALSQADLILFVLNNNEALTQEDYTLYEVVKN--EDV 330 Query: 318 VLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEI 374 ++ +NK D L Q++ +K++ IGD + S EG+D+L + + ++ Sbjct: 331 IVIVNKMD-------LEQNIDINEVKDM--IGDTPLIQTSMLKQEGIDELEIQIRDL 378 >gi|314940137|ref|ZP_07847317.1| tRNA modification GTPase TrmE [Enterococcus faecium TX0133a04] gi|314943032|ref|ZP_07849836.1| tRNA modification GTPase TrmE [Enterococcus faecium TX0133C] gi|314948150|ref|ZP_07851546.1| tRNA modification GTPase TrmE [Enterococcus faecium TX0082] gi|314953436|ref|ZP_07856354.1| tRNA modification GTPase TrmE [Enterococcus faecium TX0133A] gi|314993825|ref|ZP_07859161.1| tRNA modification GTPase TrmE [Enterococcus faecium TX0133B] gi|314998150|ref|ZP_07863032.1| tRNA modification GTPase TrmE [Enterococcus faecium TX0133a01] gi|313587862|gb|EFR66707.1| tRNA modification GTPase TrmE [Enterococcus faecium TX0133a01] gi|313591716|gb|EFR70561.1| tRNA modification GTPase TrmE [Enterococcus faecium TX0133B] gi|313594539|gb|EFR73384.1| tRNA modification GTPase TrmE [Enterococcus faecium TX0133A] gi|313598232|gb|EFR77077.1| tRNA modification GTPase TrmE [Enterococcus faecium TX0133C] gi|313640642|gb|EFS05222.1| tRNA modification GTPase TrmE [Enterococcus faecium TX0133a04] gi|313645404|gb|EFS09984.1| tRNA modification GTPase TrmE [Enterococcus faecium TX0082] Length = 485 Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 49/170 (28%), Positives = 94/170 (55%), Gaps = 14/170 (8%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L A++GRPNVGKS+L+N LL + + +G TRD + N + P+++ D Sbjct: 242 KVLREGLSTAIIGRPNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLID 301 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ + E + V++S +++ + +++L+ + P +D +++++ +G Sbjct: 302 TAGIRETEDVVERI---GVERSRKALAEADLILLVLNQSEPLTAEDEQLLEA--TSGLKR 356 Query: 318 VLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDL 367 ++ LNK D+ + L Q+ K I+N P + +IS +GLD L Sbjct: 357 IILLNKTDLPA---QLEQEKLKKLIENEP------VFSISVAKNDGLDRL 397 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 89/165 (53%), Gaps = 13/165 (7%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 + AI+G PNVGKS+L N L++++ A+V + G TRD + + GV ++DTAGI + Sbjct: 249 STAIIGRPNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRET 308 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAI---TSFLRKKNIPIIIVSNK 120 ++ + + +++ A+ EA LIL +++ +T D + TS L++ II+ NK Sbjct: 309 EDV-VERIGVERSRKALAEADLILLVLNQSEPLTAEDEQLLEATSGLKR-----IILLNK 362 Query: 121 MD--TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 D ++ Q ++ ++ + + IS + G L S I +F Sbjct: 363 TDLPAQLEQEKLKKL--IENEPVFSISVAKNDGLDRLESAISDLF 405 >gi|159029809|emb|CAO90863.1| trmE [Microcystis aeruginosa PCC 7806] Length = 457 Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 56/191 (29%), Positives = 96/191 (50%), Gaps = 11/191 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI--AD 62 +AIVG PNVGKS+L N + A+V + PG TRD + Q ++ G+ ++DTAGI A Sbjct: 225 VAIVGRPNVGKSSLLNAWSRSDRAIVTDLPGTTRDIVESQLVVAGIPVQVLDTAGIRSAS 284 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + I + + QT A L+L + +++G T D I + + +I+V NK+D Sbjct: 285 DRVEQIGVERSRQTA---QSADLVLLTVSAESGWTEEDEEIYRSVSDRR--LILVINKID 339 Query: 123 TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELH-SVIFKIFKQKYPNHPLEMIENNKRN 181 + IY + + +V+ISA + G +L ++I + Q+ L++ N ++ Sbjct: 340 LVNPE---TVIYPAEIERVVKISAVQNQGIEDLEKTIINAVQNQELQAANLDLAINQRQA 396 Query: 182 EESPKENITSE 192 + I E Sbjct: 397 AALTRAKIALE 407 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 41/124 (33%), Positives = 71/124 (57%), Gaps = 5/124 (4%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 L++A+VGRPNVGKS+L+N +R + G TRD V P+++ DTAG+R Sbjct: 223 LKVAIVGRPNVGKSSLLNAWSRSDRAIVTDLPGTTRDIVESQLVVAGIPVQVLDTAGIRS 282 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 S + +EQ V++S Q+ ++ + ++ + A + ++D I SV + ++L +NK Sbjct: 283 AS---DRVEQIGVERSRQTAQSADLVLLTVSAESGWTEEDEEIYRSV--SDRRLILVINK 337 Query: 324 WDMV 327 D+V Sbjct: 338 IDLV 341 >gi|87118655|ref|ZP_01074554.1| GTP-binding protein Era [Marinomonas sp. MED121] gi|86166289|gb|EAQ67555.1| GTP-binding protein Era [Marinomonas sp. MED121] Length = 348 Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 47/147 (31%), Positives = 78/147 (53%), Gaps = 6/147 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N ++ +K+++ P TR ++ G V VDT G+ G+ Sbjct: 60 VAIVGRPNVGKSTLLNHVLGQKLSITSRKPQTTRQQILGVKSQGHVQTIYVDTPGMHLGE 119 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN A+ + ILF+ID++ T D ++ ++ P+++V NK+D Sbjct: 120 AKAINRFMNKTASSALADVDAILFVIDAER-WTQEDQSVLEKVKLARCPVVLVVNKVDKL 178 Query: 125 IAQRNFYEIYS-----LDFKEIVEISA 146 + N + ++F +IV ISA Sbjct: 179 EEKDNLLPTLAKLSELMNFAQIVPISA 205 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 49/170 (28%), Positives = 87/170 (51%), Gaps = 10/170 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIF-DTAGMR-K 263 +A+VGRPNVGKSTL+N +LG +T + TR + + + H I+ DT GM Sbjct: 60 VAIVGRPNVGKSTLLNHVLGQKLSITSRKPQTTRQQI-LGVKSQGHVQTIYVDTPGMHLG 118 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 ++ KT ++ V + + ++DA + ++D +++ V VVL +NK Sbjct: 119 EAKAINRFMNKTASSALADV---DAILFVIDAE-RWTQEDQSVLEKVKLARCPVVLVVNK 174 Query: 324 WDMVSDKLNLLQDL-RTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVL 372 D + +K NLL L + + N QI + I+ + G+ + L+ L+ ++ Sbjct: 175 VDKLEEKDNLLPTLAKLSELMNFAQI--VPISALRGKNLDRLERLVEGMM 222 >gi|307823640|ref|ZP_07653869.1| GTP-binding protein Era [Methylobacter tundripaludum SV96] gi|307735625|gb|EFO06473.1| GTP-binding protein Era [Methylobacter tundripaludum SV96] Length = 293 Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 48/179 (26%), Positives = 90/179 (50%), Gaps = 8/179 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A++G PNVGKSTL N L+K+K+++ P TR R+ G + +DT G+ + + Sbjct: 6 VALIGRPNVGKSTLMNHLLKQKISITSRKPQTTRHRILGINTTDAGQAIYMDTPGMHNSE 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 ++ + +N E + +I++LID + YD I L + +P+I+ NK+D + Sbjct: 66 KRALNRYLNRTAETTLLGVDVIVWLIDGLSW-HEYDEVIFKKLEQAGLPVILAVNKVD-K 123 Query: 125 IAQRNFYEIYSLD------FKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 +A + + D FK +V ISA +L +I + ++ +P + + + Sbjct: 124 VADKEAILTFFNDAQHRFPFKHLVPISALKRTNLDQLEDLIMALLPERDLIYPEDQVTD 182 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 43/136 (31%), Positives = 69/136 (50%), Gaps = 17/136 (12%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIF-DTAGMRKP 264 +A++GRPNVGKSTL+N LL +T + TR + + N + I+ DT GM Sbjct: 6 VALIGRPNVGKSTLMNHLLKQKISITSRKPQTTRHRI-LGINTTDAGQAIYMDTPGMHNS 64 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATI------PFEKQDLRIVDSVFNTGHAVV 318 E++ + + + RT ETT++ +D + + + D I + G V+ Sbjct: 65 -------EKRALNRYLN--RTAETTLLGVDVIVWLIDGLSWHEYDEVIFKKLEQAGLPVI 115 Query: 319 LALNKWDMVSDKLNLL 334 LA+NK D V+DK +L Sbjct: 116 LAVNKVDKVADKEAIL 131 >gi|149248662|ref|XP_001528718.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL YB-4239] gi|146448672|gb|EDK43060.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL YB-4239] Length = 497 Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 48/175 (27%), Positives = 96/175 (54%), Gaps = 6/175 (3%) Query: 202 KPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGM 261 K + + +VG PN GKS+++N L + + +G TRD + + + + DTAG+ Sbjct: 243 KGINLTLVGPPNAGKSSILNTLSNREAAIVSNIAGTTRDVLELPLEIGGFKVVLGDTAGI 302 Query: 262 RKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLR-IVDSVFNTGHAVVLA 320 R S E +EQ+ ++++M+ + I++LD T +++ ++ ++ +G +++ Sbjct: 303 RLLSEADE-IEQEGIRRAMRKSEAADFVIMVLDPTQITGLDEMKNLLSTLHASGKQILIV 361 Query: 321 LNKWDMVSDKLNLLQD--LRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 LNK D+ D++N L+D L + + PQ I I IS TG G+++L + +++ Sbjct: 362 LNKEDLYQDRVNTLRDWYLHKLGVAHSPQ--QISILPISCLTGAGIEELRLEMIK 414 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 55/120 (45%), Gaps = 2/120 (1%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + +VG PN GKS++ N L ++ A+V N G TRD L I G + DTAGI Sbjct: 247 LTLVGPPNAGKSSILNTLSNREAAIVSNIAGTTRDVLELPLEIGGFKVVLGDTAGIRLLS 306 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHA--ITSFLRKKNIPIIIVSNKMD 122 +Q + + +EA + ++ IT D + S L I+IV NK D Sbjct: 307 EADEIEQEGIRRAMRKSEAADFVIMVLDPTQITGLDEMKNLLSTLHASGKQILIVLNKED 366 >gi|322387781|ref|ZP_08061390.1| thiophene and furan oxidation protein ThdF [Streptococcus infantis ATCC 700779] gi|321141648|gb|EFX37144.1| thiophene and furan oxidation protein ThdF [Streptococcus infantis ATCC 700779] Length = 457 Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 74/120 (61%), Gaps = 5/120 (4%) Query: 207 AVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSR 266 A++GRPNVGKS+L+N LL ++ + +G TRD + N P+++ DTAG+R+ Sbjct: 227 AIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDD 286 Query: 267 ITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 + +EQ V++S ++++ + +++L+A+ P QD ++++ +T ++ LNK D+ Sbjct: 287 V---VEQIGVERSKKALKEADLVLLVLNASEPLTAQDRQLLEISQDTNR--IILLNKTDL 341 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 41/118 (34%), Positives = 70/118 (59%), Gaps = 5/118 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+++ A+V + G TRD + INGV ++DTAGI + + Sbjct: 227 AIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDD 286 Query: 66 CSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + +Q+ ++++ A+ EA L+L ++++ +T D + + N II+ NK D Sbjct: 287 --VVEQIGVERSKKALKEADLVLLVLNASEPLTAQDRQLLEISQDTN--RIILLNKTD 340 >gi|300311261|ref|YP_003775353.1| GTP-binding ERA protein [Herbaspirillum seropedicae SmR1] gi|300074046|gb|ADJ63445.1| GTP-binding ERA protein [Herbaspirillum seropedicae SmR1] Length = 309 Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 54/169 (31%), Positives = 78/169 (46%), Gaps = 7/169 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N LV K+++ TR R+ G I + VDT G Sbjct: 24 IAIVGRPNVGKSTLMNVLVGAKVSITSRKAQTTRHRITGIQTIENTQYVYVDTPGFQTRH 83 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + ++ K +N + A +ILF+I++ P D + L N+P I+V NK D Sbjct: 84 SNALNKTLNRTVTNTLTAADVILFVIEA-GTFGPADKQVLDLL-PANVPCILVLNKADRN 141 Query: 125 IAQRNFY----EIYS-LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYP 168 + E+ S DF +V +SA+ L + K+ Q P Sbjct: 142 KDKTTLMPFAREVASHHDFAAVVPVSAKQRFQLDRLQEEVRKLLPQNPP 190 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 40/129 (31%), Positives = 66/129 (51%), Gaps = 4/129 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA+VGRPNVGKSTL+N L+G +T ++ TR ++ +N DT G + + Sbjct: 24 IAIVGRPNVGKSTLMNVLVGAKVSITSRKAQTTRHRITGIQTIENTQYVYVDTPGFQ--T 81 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 R + +L KT+ +++ + T I+ + F D +++D + +L LNK D Sbjct: 82 RHSNAL-NKTLNRTVTNTLTAADVILFVIEAGTFGPADKQVLD-LLPANVPCILVLNKAD 139 Query: 326 MVSDKLNLL 334 DK L+ Sbjct: 140 RNKDKTTLM 148 >gi|307153467|ref|YP_003888851.1| GTP-binding protein Era [Cyanothece sp. PCC 7822] gi|306983695|gb|ADN15576.1| GTP-binding protein Era [Cyanothece sp. PCC 7822] Length = 318 Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 49/162 (30%), Positives = 79/162 (48%), Gaps = 6/162 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKSTL N+LV +K+A+ TR+RL G + VDT GI Sbjct: 28 VAIIGRPNVGKSTLMNQLVGQKVAITSPVAQTTRNRLQGILTTDQAQIIFVDTPGIHK-P 86 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + K + ++AIN L+L ++DS D I + P+I+ NK D + Sbjct: 87 HHELGKVLVKNAQIAINAVDLVLLVVDSSIEAGGGDRYIIELVEDTRTPVILGLNKSDQQ 146 Query: 125 IA-----QRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 A ++ + L +V+ SA GT +L +++ + Sbjct: 147 PANYEPLDESYTRLSQLHHWPMVKFSALQGTGTEQLQNLLIE 188 Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 47/168 (27%), Positives = 82/168 (48%), Gaps = 4/168 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKSTL+N+L+G +T + TR+ + I DT G+ KP Sbjct: 28 VAIIGRPNVGKSTLMNQLVGQKVAITSPVAQTTRNRLQGILTTDQAQIIFVDTPGIHKPH 87 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + VK + ++ + ++++D++I D I++ V +T V+L LNK D Sbjct: 88 H---ELGKVLVKNAQIAINAVDLVLLVVDSSIEAGGGDRYIIELVEDTRTPVILGLNKSD 144 Query: 326 MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 L + T+ + L + + + G E L +L++ LE Sbjct: 145 QQPANYEPLDESYTR-LSQLHHWPMVKFSALQGTGTEQLQNLLIEHLE 191 >gi|157144498|ref|YP_001451817.1| GTP-binding protein Era [Citrobacter koseri ATCC BAA-895] gi|189037259|sp|A8AD18|ERA_CITK8 RecName: Full=GTPase Era gi|157081703|gb|ABV11381.1| hypothetical protein CKO_00216 [Citrobacter koseri ATCC BAA-895] Length = 301 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 49/178 (27%), Positives = 87/178 (48%), Gaps = 6/178 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N+L+ +K+++ TR R+ G VDT G+ + Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN +I + L++F+++ TP D + + LR P+I+ NK+D Sbjct: 71 KRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLRDGKAPVILAVNKVDNV 129 Query: 125 IAQRNF-----YEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 + + + ++F +IV +SAE + + ++ K + + P + I + Sbjct: 130 QEKADLLPHLQFLASQMNFLDIVPVSAETGMNVDTIAGIVRKHLPEATHHFPEDYITD 187 Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 50/161 (31%), Positives = 82/161 (50%), Gaps = 9/161 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS-VSISWNWKNHPIEIFDTAGMRKP 264 IA+VGRPNVGKSTL+N+LLG +T ++ TR V I I + DT G+ Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYV-DTPGLHME 69 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 + ++ + K + S+ E I +++ T + D +++ + + V+LA+NK Sbjct: 70 EK--RAINRLMNKAASSSIGDVELVIFVVEGT-RWTPDDEMVLNKLRDGKAPVILAVNKV 126 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLD 365 D V +K +LL L+ A Q+ + I +S TG +D Sbjct: 127 DNVQEKADLLPHLQFLA----SQMNFLDIVPVSAETGMNVD 163 >gi|291563937|emb|CBL42753.1| GTP-binding protein Era [butyrate-producing bacterium SS3/4] Length = 300 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 54/169 (31%), Positives = 87/169 (51%), Gaps = 21/169 (12%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRL-------YGQAIINGVIFNIVDT 57 + ++G PNVGKSTL N L+ +K+A+ P TR+R+ +GQ +IF +DT Sbjct: 10 VTLIGRPNVGKSTLMNHLIGQKIAITSEKPQTTRNRIQTVYTDEHGQ-----IIF--LDT 62 Query: 58 AGIADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIV 117 GI KN + + M + E + E +IL+L++ I + I L+ P+I+V Sbjct: 63 PGIHKAKN-KLGEYMVNVAEHTLREVDVILWLVEPGTYIGSGEQHILKVLQTVKTPVILV 121 Query: 118 SNKMDTRIAQRNFY---EIY--SLDFKEIVEISAEHDLGTSELHSVIFK 161 NK+DT + + + E Y + FKE++ +SA T L IF+ Sbjct: 122 INKIDT-VKKEDILKTIETYKDAYHFKEVIPVSAMKKTNTDTLIHTIFQ 169 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 35/134 (26%), Positives = 65/134 (48%), Gaps = 4/134 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 + ++GRPNVGKSTL+N L+G +T + TR+ + + ++ I DT G+ K Sbjct: 10 VTLIGRPNVGKSTLMNHLIGQKIAITSEKPQTTRNRIQTVYTDEHGQIIFLDTPGIHKAK 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + V + ++R + + L++ + I+ + V+L +NK D Sbjct: 70 N---KLGEYMVNVAEHTLREVDVILWLVEPGTYIGSGEQHILKVLQTVKTPVILVINKID 126 Query: 326 MVSDKLNLLQDLRT 339 V K ++L+ + T Sbjct: 127 TVK-KEDILKTIET 139 >gi|26554267|ref|NP_758201.1| tRNA modification GTPase TrmE [Mycoplasma penetrans HF-2] gi|81747503|sp|Q8EUV6|MNME_MYCPE RecName: Full=tRNA modification GTPase mnmE gi|26454276|dbj|BAC44605.1| thiophene and furan oxidation protein-related GTPase [Mycoplasma penetrans HF-2] Length = 444 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 51/121 (42%), Positives = 70/121 (57%), Gaps = 3/121 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + IVG PNVGKS+L N L+KK A+V + G TRD + + G++ N +DTAGI + K Sbjct: 218 VVIVGKPNVGKSSLLNSLIKKNKAIVSDIKGTTRDLVTESINLEGLLLNFIDTAGIRESK 277 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N I +T +I EA LILFLID I + I + ++ KN IIV NK D + Sbjct: 278 N-KIENIGIKKTMASIKEADLILFLIDDSKKIDKKEKEILNLIKNKN--YIIVKNKSDLK 334 Query: 125 I 125 + Sbjct: 335 V 335 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 51/89 (57%), Gaps = 3/89 (3%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 L + +VG+PNVGKS+L+N L+ N+ + G TRD V+ S N + + DTAG+R+ Sbjct: 216 LNVVIVGKPNVGKSSLLNSLIKKNKAIVSDIKGTTRDLVTESINLEGLLLNFIDTAGIRE 275 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVL 292 +E +KK+M S++ + + L Sbjct: 276 SKN---KIENIGIKKTMASIKEADLILFL 301 >gi|227112906|ref|ZP_03826562.1| GTP-binding protein Era [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 301 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 53/183 (28%), Positives = 91/183 (49%), Gaps = 20/183 (10%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYG-------QAIINGVIFNIVDT 57 +AIVG PNVGKSTL N+L+ +K+++ P TR R+ G QAI VDT Sbjct: 11 VAIVGRPNVGKSTLLNQLLGQKISITSRKPQTTRHRIMGIHTEGPYQAI-------YVDT 63 Query: 58 AGIADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIV 117 G+ + +I + MN +I + LI+F+++ D + + LR + +P+++ Sbjct: 64 PGLHIEEKRAINRLMNRAASSSIGDVELIIFVVEG-THWNDDDDMVLNKLRDQKLPVLLA 122 Query: 118 SNKMD-----TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPL 172 NK+D T++ + +DF ++V ISAE + +++ K Q + P Sbjct: 123 INKVDNVTDKTKLLPHIQFLSQQMDFLDVVPISAEKGTNVDTIANIVRKHLPQATHHFPE 182 Query: 173 EMI 175 + I Sbjct: 183 DYI 185 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 41/130 (31%), Positives = 66/130 (50%), Gaps = 5/130 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMR-KP 264 +A+VGRPNVGKSTL+N+LLG +T + TR + + DT G+ + Sbjct: 11 VAIVGRPNVGKSTLLNQLLGQKISITSRKPQTTRHRIMGIHTEGPYQAIYVDTPGLHIEE 70 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 R L + S+ V E I +++ T + D+ +++ + + V+LA+NK Sbjct: 71 KRAINRLMNRAASSSIGDV---ELIIFVVEGTHWNDDDDM-VLNKLRDQKLPVLLAINKV 126 Query: 325 DMVSDKLNLL 334 D V+DK LL Sbjct: 127 DNVTDKTKLL 136 >gi|212638693|ref|YP_002315213.1| GTPase [Anoxybacillus flavithermus WK1] gi|212560173|gb|ACJ33228.1| GTPase [Anoxybacillus flavithermus WK1] Length = 306 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 66/118 (55%), Gaps = 1/118 (0%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKST NR++ +K+A++ + P TR+++ G + +DT GI K Sbjct: 15 VAIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKIQGVYTTDDAQIIFIDTPGIHKPK 74 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + + M + A+ E LILF++++ G D I L++ P+ +V NK+D Sbjct: 75 H-KLGDFMVKVAQSALQEVDLILFMVNAVEGFGRGDEFIIERLKQVQTPVFLVINKID 131 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 38/136 (27%), Positives = 68/136 (50%), Gaps = 5/136 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKST +NR++G + + TR+ + + + I DT G+ KP Sbjct: 15 VAIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKIQGVYTTDDAQIIFIDTPGIHKPK 74 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L VK + +++ + + +++A F + D I++ + V L +NK D Sbjct: 75 H---KLGDFMVKVAQSALQEVDLILFMVNAVEGFGRGDEFIIERLKQVQTPVFLVINKID 131 Query: 326 MV--SDKLNLLQDLRT 339 V D L L++ R+ Sbjct: 132 EVHPDDLLPLIEQYRS 147 >gi|28211641|ref|NP_782585.1| GTP-binding protein Era [Clostridium tetani E88] gi|75541993|sp|Q892S2|ERA_CLOTE RecName: Full=GTPase Era gi|28204083|gb|AAO36522.1| GTP-binding protein era [Clostridium tetani E88] Length = 295 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 53/185 (28%), Positives = 98/185 (52%), Gaps = 16/185 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIIN----GVIFNIVDTAGI 60 I ++G PNVGKSTL N ++K+K+++V + P TR+ + Q I+ ++F VDT G+ Sbjct: 7 ITVIGRPNVGKSTLLNNIMKEKLSIVSHKPQTTRNNI--QTILTQEDCQIVF--VDTPGM 62 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 K+ + + M E A+ ++LF+ + + D I L++ P+ ++ NK Sbjct: 63 HKPKH-KLGEYMVKVAEEALKGVDIVLFMTTPEGQLGRGDVYILEQLKRIKQPVFLIVNK 121 Query: 121 MDT----RIAQ--RNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEM 174 +D ++A+ +N+++ Y FKEI+ ISA D L ++ K + +P +M Sbjct: 122 IDENDQGKVAETLKNYHDAYPF-FKEIIPISASKDKNVDTLLELMKKYLPEGPKYYPEDM 180 Query: 175 IENNK 179 I + + Sbjct: 181 ITDQQ 185 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 3/120 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 I V+GRPNVGKSTL+N ++ + + TR+++ ++ I DT GM KP Sbjct: 7 ITVIGRPNVGKSTLLNNIMKEKLSIVSHKPQTTRNNIQTILTQEDCQIVFVDTPGMHKPK 66 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + VK + ++++ + + + + D+ I++ + V L +NK D Sbjct: 67 H---KLGEYMVKVAEEALKGVDIVLFMTTPEGQLGRGDVYILEQLKRIKQPVFLIVNKID 123 >gi|306825270|ref|ZP_07458612.1| tRNA modification GTPase TrmE [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432706|gb|EFM35680.1| tRNA modification GTPase TrmE [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 457 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 73/120 (60%), Gaps = 5/120 (4%) Query: 207 AVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSR 266 A++GRPNVGKS+L+N LL ++ + +G TRD + N P+++ DTAG+R Sbjct: 227 AIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRDTDD 286 Query: 267 ITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 I +EQ V++S ++++ + +++L+A+ P QD ++++ +T ++ LNK D+ Sbjct: 287 I---VEQIGVERSRKALKEADLVLLVLNASEPLTAQDRQLLEISQDTNR--IILLNKTDL 341 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 43/118 (36%), Positives = 69/118 (58%), Gaps = 5/118 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+++ A+V + G TRD + INGV ++DTAGI D + Sbjct: 227 AIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRDTDD 286 Query: 66 CSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 I +Q+ +++ A+ EA L+L ++++ +T D + + N II+ NK D Sbjct: 287 --IVEQIGVERSRKALKEADLVLLVLNASEPLTAQDRQLLEISQDTN--RIILLNKTD 340 >gi|237732552|ref|ZP_04563033.1| GTP-binding protein Era [Citrobacter sp. 30_2] gi|226908091|gb|EEH94009.1| GTP-binding protein Era [Citrobacter sp. 30_2] Length = 301 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 51/176 (28%), Positives = 85/176 (48%), Gaps = 6/176 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N L+ +K+++ TR R+ G VDT G+ + Sbjct: 11 IAIVGRPNVGKSTLLNNLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN +I + L++F+++ TP D + + LR P+I+ NK+D Sbjct: 71 KRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLRDGKAPVILAVNKVDNV 129 Query: 125 IAQRNF-----YEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 + + + ++F +IV ISAE L + ++ K + + P + I Sbjct: 130 QEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTVAGIVRKHLPEAIHHFPEDYI 185 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 51/161 (31%), Positives = 81/161 (50%), Gaps = 9/161 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS-VSISWNWKNHPIEIFDTAGMRKP 264 IA+VGRPNVGKSTL+N LLG +T ++ TR V I I + DT G+ Sbjct: 11 IAIVGRPNVGKSTLLNNLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYV-DTPGLHME 69 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 + ++ + K + S+ E I +++ T + D +++ + + V+LA+NK Sbjct: 70 EK--RAINRLMNKAASSSIGDVELVIFVVEGT-RWTPDDEMVLNKLRDGKAPVILAVNKV 126 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLD 365 D V +K +LL L+ A Q+ + I IS TG +D Sbjct: 127 DNVQEKADLLPHLQFLA----SQMNFLDIVPISAETGLNVD 163 >gi|328946229|gb|EGG40373.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis SK1087] Length = 479 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 74/120 (61%), Gaps = 5/120 (4%) Query: 207 AVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSR 266 A++GRPNVGKS+L+N LL ++ + G TRD + N K P+++ DTAG+R+ Sbjct: 249 AIIGRPNVGKSSLLNNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDD 308 Query: 267 ITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 + +EQ V++S ++++ + +++L+A+ P QD ++++ ++ V+ LNK D+ Sbjct: 309 L---VEQIGVERSKKALQEADLVLLVLNASEPLTDQDRQLLEISQDSNRIVL--LNKTDL 363 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 86/161 (53%), Gaps = 14/161 (8%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+++ A+V + G TRD + I GV ++DTAGI + + Sbjct: 249 AIIGRPNVGKSSLLNNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDD 308 Query: 66 CSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +Q+ ++++ A+ EA L+L ++++ +T D + + N I++ NK D Sbjct: 309 --LVEQIGVERSKKALQEADLVLLVLNASEPLTDQDRQLLEISQDSN--RIVLLNKTD-- 362 Query: 125 IAQRNFYEIYSLDF--KEIVEISAEHDLGTSELHSVIFKIF 163 E LD ++++IS H+ ++ I ++F Sbjct: 363 -----LEEKIELDLLPTDVIKISVLHNQNIDKIEERINQLF 398 >gi|307706532|ref|ZP_07643339.1| tRNA modification GTPase TrmE [Streptococcus mitis SK321] gi|307617987|gb|EFN97147.1| tRNA modification GTPase TrmE [Streptococcus mitis SK321] Length = 457 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 73/120 (60%), Gaps = 5/120 (4%) Query: 207 AVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSR 266 A++GRPNVGKS+L+N LL ++ + +G TRD + N P+++ DTAG+R+ Sbjct: 227 AIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDD 286 Query: 267 ITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 I +EQ V++S ++++ + +++L+A+ P QD ++++ T ++ LNK D+ Sbjct: 287 I---VEQIGVERSKKALKEADLVLLVLNASEPLTAQDRQLLEISQETNR--IILLNKTDL 341 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 42/118 (35%), Positives = 71/118 (60%), Gaps = 5/118 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+++ A+V + G TRD + INGV ++DTAGI + + Sbjct: 227 AIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDD 286 Query: 66 CSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 I +Q+ ++++ A+ EA L+L ++++ +T D + ++ N II+ NK D Sbjct: 287 --IVEQIGVERSKKALKEADLVLLVLNASEPLTAQDRQLLEISQETN--RIILLNKTD 340 >gi|50122199|ref|YP_051366.1| GTP-binding protein Era [Pectobacterium atrosepticum SCRI1043] gi|49612725|emb|CAG76175.1| GTP-binding protein [Pectobacterium atrosepticum SCRI1043] Length = 301 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 50/176 (28%), Positives = 88/176 (50%), Gaps = 6/176 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N+L+ +K+++ P TR R+ G VDT G+ + Sbjct: 11 VAIVGRPNVGKSTLLNQLLGQKISITSRKPQTTRHRIMGIHTEGPYQAIYVDTPGLHIEE 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD-- 122 +I + MN ++ + LI+F+++ D + + LR + +P+++ NK+D Sbjct: 71 KRAINRLMNRAASSSMGDVELIIFVVEG-THWNDDDDMVLNKLRDQKLPVLLAINKVDNV 129 Query: 123 ---TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 T++ + +DF ++V ISAE + S++ K Q + P + I Sbjct: 130 TDKTKLLPHIQFLSQQMDFLDVVPISAEKGSNVDTIASIVRKHLPQATHHFPEDYI 185 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 42/130 (32%), Positives = 66/130 (50%), Gaps = 5/130 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMR-KP 264 +A+VGRPNVGKSTL+N+LLG +T + TR + + DT G+ + Sbjct: 11 VAIVGRPNVGKSTLLNQLLGQKISITSRKPQTTRHRIMGIHTEGPYQAIYVDTPGLHIEE 70 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 R L + SM V E I +++ T + D+ +++ + + V+LA+NK Sbjct: 71 KRAINRLMNRAASSSMGDV---ELIIFVVEGTHWNDDDDM-VLNKLRDQKLPVLLAINKV 126 Query: 325 DMVSDKLNLL 334 D V+DK LL Sbjct: 127 DNVTDKTKLL 136 >gi|242255880|gb|ACS88924.1| GTPase [Helicobacter pylori] Length = 170 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 50/161 (31%), Positives = 82/161 (50%), Gaps = 6/161 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++ + + G TRD + +N ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNRLARERIVITSDFAGTTRDINKRKIALNSHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKTNPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 K+D + Y S + IS H+ G + L I Sbjct: 123 KIDNDKEKERAYAFSSFGMPKSFNISVSHNRGINALIDAIL 163 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 86/172 (50%), Gaps = 12/172 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL ++T +G TRD +H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNRLARERIVITSDFAGTTRDINKRKIALNSHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF T L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKTNPNCFLVINKI 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 D +DK + R A + I+ R L D ++S L +N+ Sbjct: 125 D--NDK----EKERAYAFSSFGMPKSFNISVSHNRGINALIDAILSTLNLNQ 170 >gi|217967705|ref|YP_002353211.1| GTP-binding protein Era [Dictyoglomus turgidum DSM 6724] gi|217336804|gb|ACK42597.1| GTP-binding protein Era [Dictyoglomus turgidum DSM 6724] Length = 298 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 45/147 (30%), Positives = 80/147 (54%), Gaps = 6/147 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 I+IVG PN GKSTL N LV +K+++V + P TR R+ G + F +DT G K Sbjct: 10 ISIVGKPNAGKSTLINLLVGEKVSIVADKPQTTRQRILGVLTLEDAQFIFLDTPGWFPPK 69 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD-- 122 + + + M + I ++ ++L++IDS + + + F++ + P +++ NK+D Sbjct: 70 HL-LGEYMQKTIKKTIEDSDIVLYVIDSSVELDDDNRTLLKFVKDQGKPYLVLLNKIDMV 128 Query: 123 -TRIAQRNFYEIYSLDFKE--IVEISA 146 ++ + E+ +L E I+EISA Sbjct: 129 SSKSIEERKKEVIALGVSEEKIIEISA 155 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 64/125 (51%), Gaps = 3/125 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 I++VG+PN GKSTLIN L+G + + TR + ++ DT G P Sbjct: 10 ISIVGKPNAGKSTLINLLVGEKVSIVADKPQTTRQRILGVLTLEDAQFIFLDTPGWFPPK 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + QKT+KK+++ + + ++D+++ + + ++ V + G ++ LNK D Sbjct: 70 HLLGEYMQKTIKKTIED---SDIVLYVIDSSVELDDDNRTLLKFVKDQGKPYLVLLNKID 126 Query: 326 MVSDK 330 MVS K Sbjct: 127 MVSSK 131 >gi|123441364|ref|YP_001005351.1| GTP-binding protein Era [Yersinia enterocolitica subsp. enterocolitica 8081] gi|332162690|ref|YP_004299267.1| GTP-binding protein Era [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|189037685|sp|A1JKK4|ERA_YERE8 RecName: Full=GTPase Era gi|122088325|emb|CAL11116.1| putative GTP-binding protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|318606795|emb|CBY28293.1| GTP-binding protein Era [Yersinia enterocolitica subsp. palearctica Y11] gi|325666920|gb|ADZ43564.1| GTP-binding protein Era [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330860318|emb|CBX70632.1| GTP-binding protein era homolog [Yersinia enterocolitica W22703] Length = 303 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 50/176 (28%), Positives = 87/176 (49%), Gaps = 6/176 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N L+ +K+++ P TR R+ G VDT G+ + Sbjct: 12 IAIVGRPNVGKSTLLNELLGQKISITSRKPQTTRHRIMGIHTEGPYQAIYVDTPGLHIEE 71 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD-- 122 +I + MN +I + L++F+++ T D + + LR P+++ NK+D Sbjct: 72 KRAINRLMNRAASSSIGDVELVIFVVEG-TNWTADDEMVVNKLRSLQCPVLLAINKVDNV 130 Query: 123 ---TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 T++ + ++F ++V ISAE + + S++ K + + P + I Sbjct: 131 TDKTKLLPHIQFLSQQMNFLDVVPISAEKGMNVDTIASIVRKHMPEADHHFPEDYI 186 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 43/130 (33%), Positives = 64/130 (49%), Gaps = 5/130 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMR-KP 264 IA+VGRPNVGKSTL+N LLG +T + TR + + DT G+ + Sbjct: 12 IAIVGRPNVGKSTLLNELLGQKISITSRKPQTTRHRIMGIHTEGPYQAIYVDTPGLHIEE 71 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 R L + S+ V E I +++ T + D +V+ + + V+LA+NK Sbjct: 72 KRAINRLMNRAASSSIGDV---ELVIFVVEGT-NWTADDEMVVNKLRSLQCPVLLAINKV 127 Query: 325 DMVSDKLNLL 334 D V+DK LL Sbjct: 128 DNVTDKTKLL 137 >gi|222153198|ref|YP_002562375.1| tRNA modification GTPase TrmE [Streptococcus uberis 0140J] gi|222114011|emb|CAR42339.1| tRNA modification GTPase TrmE [Streptococcus uberis 0140J] Length = 458 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 43/117 (36%), Positives = 70/117 (59%), Gaps = 3/117 (2%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L++++ A+V + G TRD + I GV +VDTAGI D + Sbjct: 228 AIIGRPNVGKSSLLNNLLREEKAIVTDIAGTTRDVIEEYVNIKGVPLKLVDTAGIRDTDD 287 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + K ++++ A+NEA L+L ++++ +T D + ++ N II+ NK D Sbjct: 288 I-VEKIGVERSKKALNEADLVLLVLNASESLTEQDRVLLDLSKESN--RIILLNKTD 341 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 41/129 (31%), Positives = 75/129 (58%), Gaps = 5/129 (3%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L A++GRPNVGKS+L+N LL + + +G TRD + N K P+++ D Sbjct: 219 KILREGLSTAIIGRPNVGKSSLLNNLLREEKAIVTDIAGTTRDVIEEYVNIKGVPLKLVD 278 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R I E + V++S +++ + +++L+A+ +QD R++ + + + Sbjct: 279 TAGIRDTDDIVEKI---GVERSKKALNEADLVLLVLNASESLTEQD-RVLLDLSKESNRI 334 Query: 318 VLALNKWDM 326 +L LNK D+ Sbjct: 335 IL-LNKTDL 342 >gi|315613122|ref|ZP_07888032.1| tRNA modification GTPase TrmE [Streptococcus sanguinis ATCC 49296] gi|315314684|gb|EFU62726.1| tRNA modification GTPase TrmE [Streptococcus sanguinis ATCC 49296] Length = 471 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 73/120 (60%), Gaps = 5/120 (4%) Query: 207 AVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSR 266 A++GRPNVGKS+L+N LL ++ + +G TRD + N P+++ DTAG+R Sbjct: 241 AIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRDTDD 300 Query: 267 ITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 I +EQ V++S ++++ + +++L+A+ P QD ++++ +T ++ LNK D+ Sbjct: 301 I---VEQIGVERSKKALKEADLVLLVLNASDPLTAQDRQLLEISQDTNR--IILLNKTDL 355 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 43/118 (36%), Positives = 70/118 (59%), Gaps = 5/118 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+++ A+V + G TRD + INGV ++DTAGI D + Sbjct: 241 AIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRDTDD 300 Query: 66 CSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 I +Q+ ++++ A+ EA L+L ++++ +T D + + N II+ NK D Sbjct: 301 --IVEQIGVERSKKALKEADLVLLVLNASDPLTAQDRQLLEISQDTN--RIILLNKTD 354 >gi|187925952|ref|YP_001897594.1| tRNA modification GTPase TrmE [Burkholderia phytofirmans PsJN] gi|187717146|gb|ACD18370.1| tRNA modification GTPase TrmE [Burkholderia phytofirmans PsJN] Length = 464 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 50/160 (31%), Positives = 85/160 (53%), Gaps = 4/160 (2%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 ++ + G PNVGKS+L N L ++A+V G TRD++ I G+ +++DTAG+ D Sbjct: 228 SVVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQIEGIPLHVIDTAGLRDT 287 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD- 122 ++ + K +T I A ++L L+D++ G+T D AI + +P++ V NK D Sbjct: 288 ED-EVEKIGIARTWSEIERADVVLHLLDARTGMTAEDDAIAGRF-PRGVPVVRVLNKTDL 345 Query: 123 TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKI 162 T +A L+ E V +SA+ G + L + +I Sbjct: 346 TGLAPATQALDADLELSE-VRLSAKQGDGVALLRDELLRI 384 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 53/221 (23%), Positives = 95/221 (42%), Gaps = 25/221 (11%) Query: 114 IIIVSNKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLE 173 +I S + R A R+ +S D +VE + ++ + + P E Sbjct: 142 LIEASTEAAARSAGRSLDGAFSRDIHALVE------------DVITLRMLVEATLDFPEE 189 Query: 174 MIENNKRNEESPK--------ENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLG 225 I+ + + K ++ SE + + + L + + G+PNVGKS+L+N L G Sbjct: 190 EIDFLEAADARGKLTRIRERLAHVLSEARQGAL-LREGLSVVLAGQPNVGKSSLLNALAG 248 Query: 226 YNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRT 285 + +G TRD V+ + + P+ + DTAG+R + +E+ + ++ + Sbjct: 249 AELAIVTPIAGTTRDKVAQTIQIEGIPLHVIDTAGLRDTE---DEVEKIGIARTWSEIER 305 Query: 286 CETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 + + LLDA +D I F G VV LNK D+ Sbjct: 306 ADVVLHLLDARTGMTAEDDAIAGR-FPRGVPVVRVLNKTDL 345 >gi|104774816|ref|YP_619796.1| tRNA modification GTPase TrmE [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116514945|ref|YP_813851.1| tRNA modification GTPase TrmE [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|122274323|sp|Q047F9|MNME_LACDB RecName: Full=tRNA modification GTPase mnmE gi|123077174|sp|Q1G7Z4|MNME_LACDA RecName: Full=tRNA modification GTPase mnmE gi|103423897|emb|CAI98939.1| tRNA modification GTPase trmE [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116094260|gb|ABJ59413.1| tRNA modification GTPase trmE [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|325126645|gb|ADY85975.1| Thiophene and furan oxidation protein [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 461 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 58/177 (32%), Positives = 88/177 (49%), Gaps = 6/177 (3%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AIVG PNVGKS+L N L + A+V + G TRD L + GV ++DTAGI ++ Sbjct: 228 AIVGRPNVGKSSLLNYLTQSDKAIVTDVAGTTRDTLEEFVSVKGVPLELIDTAGIHHTED 287 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 + K ++++ AI +A LIL L+D +T D + K IIV NK D + Sbjct: 288 -QVEKIGVERSKKAIAQADLILLLLDGSQELTEEDRQLLELTAGKK--RIIVLNKTD--L 342 Query: 126 AQR-NFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 Q+ EI E++ S EL ++I K+F + N +++ N+R Sbjct: 343 GQKLTAAEIAKESGSEVISTSIMMKENLDELEALIKKLFFKGIENSNDQVLVTNQRQ 399 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 72/123 (58%), Gaps = 5/123 (4%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 L+ A+VGRPNVGKS+L+N L ++ + +G TRD++ + K P+E+ DTAG+ Sbjct: 225 LKTAIVGRPNVGKSSLLNYLTQSDKAIVTDVAGTTRDTLEEFVSVKGVPLELIDTAGIHH 284 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 + +E+ V++S +++ + ++LLD + ++D ++++ G ++ LNK Sbjct: 285 TE---DQVEKIGVERSKKAIAQADLILLLLDGSQELTEEDRQLLE--LTAGKKRIIVLNK 339 Query: 324 WDM 326 D+ Sbjct: 340 TDL 342 >gi|322383675|ref|ZP_08057426.1| Era-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321151887|gb|EFX44830.1| Era-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 300 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 54/185 (29%), Positives = 87/185 (47%), Gaps = 17/185 (9%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A++G PNVGKSTL N+++ +K+A++ + P TR++++G +DT GI Sbjct: 12 VALIGRPNVGKSTLMNQVIGQKIAIMSDKPQTTRNKIHGVYTTEHAQIVFLDTPGIHK-P 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + M + E ILFL+D GI D I L+ P+I+V NK+D Sbjct: 71 QSKLGDYMMKVAHSTLAEVDAILFLVDVAEGIGGGDRFIIEQLKSVQTPVILVLNKIDKV 130 Query: 125 IAQ------RNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFK---QKYP-----NH 170 + + E+Y F EIV +SA + + I K + Q YP +H Sbjct: 131 HPEDLLPVISTYKELYP--FTEIVPVSALQGNNVTTMLEQITKYLEEGPQYYPADQVTDH 188 Query: 171 PLEMI 175 P + + Sbjct: 189 PEQFV 193 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKSTL+N+++G + + TR+ + + ++ I DT G+ KP Sbjct: 12 VALIGRPNVGKSTLMNQVIGQKIAIMSDKPQTTRNKIHGVYTTEHAQIVFLDTPGIHKPQ 71 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L +K + ++ + + L+D D I++ + + V+L LNK D Sbjct: 72 ---SKLGDYMMKVAHSTLAEVDAILFLVDVAEGIGGGDRFIIEQLKSVQTPVILVLNKID 128 Query: 326 MV 327 V Sbjct: 129 KV 130 >gi|227550631|ref|ZP_03980680.1| tRNA modification GTP-binding protein TrmE [Enterococcus faecium TX1330] gi|227180232|gb|EEI61204.1| tRNA modification GTP-binding protein TrmE [Enterococcus faecium TX1330] Length = 492 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 49/170 (28%), Positives = 93/170 (54%), Gaps = 14/170 (8%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L A++GRPNVGKS+L+N LL + + +G TRD + N + P+++ D Sbjct: 249 KVLREGLSTAIIGRPNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLID 308 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ + E + V++S +++ + +++L+ + P +D +++++ G Sbjct: 309 TAGIRETEDVVERI---GVERSRKALAEADLILLVLNQSEPLTAEDEQLLEA--TKGLKR 363 Query: 318 VLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDL 367 ++ LNK D+ + L Q+ K I+N P + +IS +GLD L Sbjct: 364 IILLNKTDLPA---QLEQEKLNKLIENEP------VFSISVAKNDGLDHL 404 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 47/162 (29%), Positives = 86/162 (53%), Gaps = 7/162 (4%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 + AI+G PNVGKS+L N L++++ A+V + G TRD + + GV ++DTAGI + Sbjct: 256 STAIIGRPNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRET 315 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD- 122 ++ + + +++ A+ EA LIL +++ +T D + K + II+ NK D Sbjct: 316 EDV-VERIGVERSRKALAEADLILLVLNQSEPLTAEDEQLLE--ATKGLKRIILLNKTDL 372 Query: 123 -TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 ++ Q ++ ++ + + IS + G L S I +F Sbjct: 373 PAQLEQEKLNKL--IENEPVFSISVAKNDGLDHLESAISDLF 412 >gi|56708234|ref|YP_170130.1| GTP-binding protein Era [Francisella tularensis subsp. tularensis SCHU S4] gi|110670705|ref|YP_667262.1| GTP-binding protein Era [Francisella tularensis subsp. tularensis FSC198] gi|134302151|ref|YP_001122120.1| GTP-binding protein Era [Francisella tularensis subsp. tularensis WY96-3418] gi|224457352|ref|ZP_03665825.1| GTP-binding protein Era [Francisella tularensis subsp. tularensis MA00-2987] gi|254370721|ref|ZP_04986726.1| GTP-binding protein [Francisella tularensis subsp. tularensis FSC033] gi|254875055|ref|ZP_05247765.1| GTP-binding protein era [Francisella tularensis subsp. tularensis MA00-2987] gi|56604726|emb|CAG45797.1| GTP-binding protein [Francisella tularensis subsp. tularensis SCHU S4] gi|110321038|emb|CAL09180.1| GTP-binding protein [Francisella tularensis subsp. tularensis FSC198] gi|134049928|gb|ABO46999.1| GTP-binding protein Era [Francisella tularensis subsp. tularensis WY96-3418] gi|151568964|gb|EDN34618.1| GTP-binding protein [Francisella tularensis subsp. tularensis FSC033] gi|254841054|gb|EET19490.1| GTP-binding protein era [Francisella tularensis subsp. tularensis MA00-2987] gi|282159460|gb|ADA78851.1| GTP-binding protein Era [Francisella tularensis subsp. tularensis NE061598] Length = 297 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 52/163 (31%), Positives = 82/163 (50%), Gaps = 5/163 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 I+I+G PNVGKSTL N ++K K+++ P TR ++ G + F VDT GI + Sbjct: 7 ISIIGRPNVGKSTLLNNILKYKVSITSRKPQTTRHQITGIKTLGDTQFIYVDTPGIHIKE 66 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I K MN + +ILF+++ T + I L+ IPI +V NK+D + Sbjct: 67 PKAINKFMNKAATTMFKDVDVILFVVEM-GKWTELEDNIVEKLKHSEIPIFLVVNKVDKK 125 Query: 125 IAQRNFYEIYS----LDFKEIVEISAEHDLGTSELHSVIFKIF 163 + I S L F +++ +SA+ +EL S I K+ Sbjct: 126 KSLEAAMFIESIKEKLSFYDVIYVSAKQGHNINELESRIEKLL 168 Score = 39.7 bits (91), Expect = 0.98, Method: Compositional matrix adjust. Identities = 17/38 (44%), Positives = 26/38 (68%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 I+++GRPNVGKSTL+N +L Y +T + TR ++ Sbjct: 7 ISIIGRPNVGKSTLLNNILKYKVSITSRKPQTTRHQIT 44 >gi|270265299|ref|ZP_06193560.1| GTP-binding protein [Serratia odorifera 4Rx13] gi|270040703|gb|EFA13806.1| GTP-binding protein [Serratia odorifera 4Rx13] Length = 302 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 48/176 (27%), Positives = 88/176 (50%), Gaps = 6/176 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N+L+ +K+++ P TR R+ G VDT G+ + Sbjct: 11 IAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGIDTDGAYQAIYVDTPGLHIEE 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD-- 122 +I + MN +I + L++F+++ T D + + LR P+++ NK+D Sbjct: 71 KRAINRLMNRAASSSIGDVELVIFVVEG-TNWTADDEMVVNKLRSLKCPVLLAINKVDNV 129 Query: 123 ---TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 +++ + ++F ++V ISAE + + ++ K+ + + P + I Sbjct: 130 TDKSKLLPHIAFLSQQMNFLDVVPISAEKGMNVDTIAAIARKLLPEAEHHFPDDYI 185 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 45/131 (34%), Positives = 68/131 (51%), Gaps = 7/131 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV-SISWNWKNHPIEIFDTAGMR-K 263 IA+VGRPNVGKSTL+N+LLG +T + TR + I + I + DT G+ + Sbjct: 11 IAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGIDTDGAYQAIYV-DTPGLHIE 69 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 R L + S+ V E I +++ T + D +V+ + + V+LA+NK Sbjct: 70 EKRAINRLMNRAASSSIGDV---ELVIFVVEGT-NWTADDEMVVNKLRSLKCPVLLAINK 125 Query: 324 WDMVSDKLNLL 334 D V+DK LL Sbjct: 126 VDNVTDKSKLL 136 >gi|257888103|ref|ZP_05667756.1| tRNA modification GTPase mnmE [Enterococcus faecium 1,141,733] gi|257896278|ref|ZP_05675931.1| tRNA modification GTPase mnmE [Enterococcus faecium Com12] gi|293379359|ref|ZP_06625503.1| tRNA modification GTPase TrmE [Enterococcus faecium PC4.1] gi|257824157|gb|EEV51089.1| tRNA modification GTPase mnmE [Enterococcus faecium 1,141,733] gi|257832843|gb|EEV59264.1| tRNA modification GTPase mnmE [Enterococcus faecium Com12] gi|292641882|gb|EFF60048.1| tRNA modification GTPase TrmE [Enterococcus faecium PC4.1] Length = 465 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 49/170 (28%), Positives = 93/170 (54%), Gaps = 14/170 (8%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L A++GRPNVGKS+L+N LL + + +G TRD + N + P+++ D Sbjct: 222 KVLREGLSTAIIGRPNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLID 281 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ + E + V++S +++ + +++L+ + P +D +++++ G Sbjct: 282 TAGIRETEDVVERI---GVERSRKALAEADLILLVLNQSEPLTAEDEQLLEA--TKGLKR 336 Query: 318 VLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDL 367 ++ LNK D+ + L Q+ K I+N P + +IS +GLD L Sbjct: 337 IILLNKTDLPA---QLEQEKLNKLIENEP------VFSISVAKNDGLDHL 377 Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 47/162 (29%), Positives = 86/162 (53%), Gaps = 7/162 (4%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 + AI+G PNVGKS+L N L++++ A+V + G TRD + + GV ++DTAGI + Sbjct: 229 STAIIGRPNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRET 288 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD- 122 ++ + + +++ A+ EA LIL +++ +T D + K + II+ NK D Sbjct: 289 EDV-VERIGVERSRKALAEADLILLVLNQSEPLTAEDEQLLE--ATKGLKRIILLNKTDL 345 Query: 123 -TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 ++ Q ++ ++ + + IS + G L S I +F Sbjct: 346 PAQLEQEKLNKL--IENEPVFSISVAKNDGLDHLESAISDLF 385 >gi|189195158|ref|XP_001933917.1| tRNA modification GTPase mss1, mitochondrial precursor [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187979796|gb|EDU46422.1| tRNA modification GTPase mss1, mitochondrial precursor [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 491 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 36/126 (28%), Positives = 71/126 (56%), Gaps = 4/126 (3%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 + +A++G PN GKS+L+NR++G + + ++G TRD V + + ++I D AG+RK Sbjct: 208 ISVALLGAPNAGKSSLLNRVVGRDAAIVSQEAGTTRDVVEVGLDLGGWLVKIGDMAGLRK 267 Query: 264 P----SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 + + +EQ+ ++++ Q + IV+ DAT +++ + + G V++ Sbjct: 268 AGLVGADVVGVVEQEGIRRAKQRALESDVVIVVQDATADMDQEVMETAKQCVDLGIDVIV 327 Query: 320 ALNKWD 325 A+NK D Sbjct: 328 AINKTD 333 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 35/57 (61%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 ++A++GAPN GKS+L NR+V + A+V G TRD + + G + I D AG+ Sbjct: 209 SVALLGAPNAGKSSLLNRVVGRDAAIVSQEAGTTRDVVEVGLDLGGWLVKIGDMAGL 265 >gi|18075561|emb|CAD11176.1| GTP-binding protein [Helicobacter pylori] gi|122702801|emb|CAL88590.1| GTPase [Helicobacter pylori] Length = 170 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 51/156 (32%), Positives = 82/156 (52%), Gaps = 6/156 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFN L ++++A+ + G TRD + +NG ++DT G+A Sbjct: 7 LKTIAILGQPNVGKSSLFNCLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 66 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSN 119 K+ ++K++ A + LIL+++D K+ P D + F + K N +V N Sbjct: 67 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLFREVFKINPNCFLVIN 122 Query: 120 KMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 K+D + Y S + IS H+ G S L Sbjct: 123 KIDNDKEKERSYAFSSFGAPKSFNISVSHNRGISTL 158 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 63/121 (52%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L N L +T +G TRD H +E+ DT GM K + Sbjct: 10 IAILGQPNVGKSSLFNCLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +++ ++ +K + S + + ++D +IP + +DL++ VF L +NK Sbjct: 70 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|89900533|ref|YP_523004.1| GTP-binding protein Era [Rhodoferax ferrireducens T118] gi|89345270|gb|ABD69473.1| GTP-binding protein Era [Rhodoferax ferrireducens T118] Length = 314 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 44/118 (37%), Positives = 64/118 (54%), Gaps = 2/118 (1%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N LV +K+++ TR R+ G F VDT G Sbjct: 23 IAIVGKPNVGKSTLMNALVGQKISITSRKAQTTRHRITGIHSQGAAQFVFVDTPGFQTRH 82 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 N ++ + +N A+ + LILF+++ AG+ A L K+IP ++V+NK+D Sbjct: 83 NNALNRSLNKTVLGAVGDVDLILFVVE--AGMFNQADAKVLALLSKDIPTLLVANKLD 138 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 35/138 (25%), Positives = 73/138 (52%), Gaps = 7/138 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA+VG+PNVGKSTL+N L+G +T ++ TR ++ + DT G + + Sbjct: 23 IAIVGKPNVGKSTLMNALVGQKISITSRKAQTTRHRITGIHSQGAAQFVFVDTPGFQ--T 80 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 R +L + K + +V + + +++A + F + D +++ ++ + +L NK D Sbjct: 81 RHNNALNRSLNKTVLGAVGDVDLILFVVEAGM-FNQADAKVL-ALLSKDIPTLLVANKLD 138 Query: 326 MVSDKLNL---LQDLRTK 340 V+ + ++ LQ+++ + Sbjct: 139 QVTRRADIAPWLQEMQQR 156 >gi|302385324|ref|YP_003821146.1| GTP-binding protein Era [Clostridium saccharolyticum WM1] gi|302195952|gb|ADL03523.1| GTP-binding protein Era [Clostridium saccharolyticum WM1] Length = 301 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 53/166 (31%), Positives = 82/166 (49%), Gaps = 14/166 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIING----VIFNIVDTAGI 60 + ++G PNVGKSTL N L+ +K+A+ + P TR+R+ Q + +IF +DT GI Sbjct: 10 VTLIGRPNVGKSTLMNHLIGQKIAITSDKPQTTRNRI--QTVYTDERGQIIF--LDTPGI 65 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 KN + + M E + E ++L+L++ I + I L + P+I+ NK Sbjct: 66 HKAKN-KLGEYMVSVAERTLKEVDVVLWLVEPTTYIGAGEQHIAEQLNQVKTPVILAINK 124 Query: 121 MDTRIAQRNFYEIYS-----LDFKEIVEISAEHDLGTSELHSVIFK 161 +DT Q S F EIV +SA D T L +I+K Sbjct: 125 IDTVKNQEEILTFISAYKDVCRFAEIVPVSALKDKNTDLLLELIYK 170 Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 34/129 (26%), Positives = 64/129 (49%), Gaps = 3/129 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 + ++GRPNVGKSTL+N L+G +T + TR+ + + + I DT G+ K Sbjct: 10 VTLIGRPNVGKSTLMNHLIGQKIAITSDKPQTTRNRIQTVYTDERGQIIFLDTPGIHKAK 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + V + ++++ + + L++ T + I + + V+LA+NK D Sbjct: 70 N---KLGEYMVSVAERTLKEVDVVLWLVEPTTYIGAGEQHIAEQLNQVKTPVILAINKID 126 Query: 326 MVSDKLNLL 334 V ++ +L Sbjct: 127 TVKNQEEIL 135 >gi|294781805|ref|ZP_06747138.1| tRNA modification GTPase TrmE [Fusobacterium sp. 1_1_41FAA] gi|294481915|gb|EFG29683.1| tRNA modification GTPase TrmE [Fusobacterium sp. 1_1_41FAA] Length = 455 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 47/156 (30%), Positives = 87/156 (55%), Gaps = 7/156 (4%) Query: 171 PLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLL 230 P +++N K+ K+ I+S K + I ++ A++G+PNVGKS+++N LL +R + Sbjct: 189 PENLVDNLKKASAEIKDLISSYDKGKI--IKDGIKTAIIGKPNVGKSSILNSLLREDRAI 246 Query: 231 TGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTI 290 G TRD + N + P+ + DTAG+R I E++ V+KS + + + + + Sbjct: 247 VTHIPGTTRDIIEEVININSIPLLLVDTAGIRNTDDIVENI---GVEKSKELINSADLIL 303 Query: 291 VLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 ++D + +++D RI + + NT V+ LNK D+ Sbjct: 304 YVIDTSREIDEEDFRIYE-IINT-DKVIGILNKIDI 337 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 58/183 (31%), Positives = 92/183 (50%), Gaps = 13/183 (7%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS++ N L+++ A+V + PG TRD + IN + +VDTAGI + + Sbjct: 223 AIIGKPNVGKSSILNSLLREDRAIVTHIPGTTRDIIEEVININSIPLLLVDTAGIRNTDD 282 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 + EL IN A LIL++ID+ I D I + +I + NK+D + Sbjct: 283 IVENIGVEKSKEL-INSADLILYVIDTSREIDEEDFRIYEIINTD--KVIGILNKIDIK- 338 Query: 126 AQRNFYEIYSLDFKEI---VEISAEHDLGTSELHSVIFK-IFKQKYPNHPLEMIENNKRN 181 EI F +I +EISA +G L I+K I + + +++ N R+ Sbjct: 339 -----KEIDLSKFSKIDKWIEISALSKIGIDNLEDQIYKYIMNENVEDSSQKLVITNVRH 393 Query: 182 EES 184 + + Sbjct: 394 KSA 396 >gi|15900887|ref|NP_345491.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae TIGR4] gi|111658245|ref|ZP_01408937.1| hypothetical protein SpneT_02000559 [Streptococcus pneumoniae TIGR4] gi|21363022|sp|Q97R24|MNME_STRPN RecName: Full=tRNA modification GTPase mnmE gi|14972489|gb|AAK75131.1| thiophene and furan oxidation protein ThdF [Streptococcus pneumoniae TIGR4] Length = 457 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 73/120 (60%), Gaps = 5/120 (4%) Query: 207 AVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSR 266 A++GRPNVGKS+L+N LL ++ + +G TRD + N P+++ DTAG+R+ Sbjct: 227 AIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDD 286 Query: 267 ITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 I +EQ V++S ++++ + +++L+A+ P QD ++++ T ++ LNK D+ Sbjct: 287 I---VEQIGVERSKKALKEADLVLLVLNASEPLTAQDRQLLEISQETNR--IILLNKTDL 341 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 42/118 (35%), Positives = 71/118 (60%), Gaps = 5/118 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+++ A+V + G TRD + INGV ++DTAGI + + Sbjct: 227 AIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDD 286 Query: 66 CSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 I +Q+ ++++ A+ EA L+L ++++ +T D + ++ N II+ NK D Sbjct: 287 --IVEQIGVERSKKALKEADLVLLVLNASEPLTAQDRQLLEISQETN--RIILLNKTD 340 >gi|304383244|ref|ZP_07365715.1| tRNA modification GTPase TrmE [Prevotella marshii DSM 16973] gi|304335626|gb|EFM01885.1| tRNA modification GTPase TrmE [Prevotella marshii DSM 16973] Length = 460 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 47/122 (38%), Positives = 71/122 (58%), Gaps = 6/122 (4%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 ++AIVG NVGKSTL NRL+K++ A+V G TRD + I GV F +DTAGI + Sbjct: 227 SVAIVGKTNVGKSTLLNRLLKEERAIVSEIHGTTRDVIEDTMQIRGVTFRFIDTAGIRE- 285 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF-LRKKNIPIIIVSNKMD 122 N I ++T ++EA +++++ID+ +P I R K +I+V+NKMD Sbjct: 286 TNDKIESLGIERTYRKLSEAAIVIWMIDA----SPTFSEIQEMEARVKGKKLIVVANKMD 341 Query: 123 TR 124 + Sbjct: 342 EK 343 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 73/145 (50%), Gaps = 14/145 (9%) Query: 186 KENITSEGKS--SVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 KE IT +S + + + + +A+VG+ NVGKSTL+NRLL R + G TRD + Sbjct: 206 KEKITRLAQSFQTGRALKSGVSVAIVGKTNVGKSTLLNRLLKEERAIVSEIHGTTRDVIE 265 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPF---E 300 + + DTAG+R+ + ESL ++++ + + I ++DA+ F + Sbjct: 266 DTMQIRGVTFRFIDTAGIRETNDKIESL---GIERTYRKLSEAAIVIWMIDASPTFSEIQ 322 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWD 325 + + R+ G +++ NK D Sbjct: 323 EMEARV------KGKKLIVVANKMD 341 >gi|261365608|ref|ZP_05978491.1| GTP-binding protein Era [Neisseria mucosa ATCC 25996] gi|288565938|gb|EFC87498.1| GTP-binding protein Era [Neisseria mucosa ATCC 25996] Length = 308 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 52/179 (29%), Positives = 89/179 (49%), Gaps = 8/179 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N L+ +K+++ TR+R+ G + F VDT G Sbjct: 22 VAIVGRPNVGKSTLMNHLIGQKISITSKKAQTTRNRVTGIYTDDTAQFVFVDTPGFQTKH 81 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 ++ ++N A++ ++F++++ T D + L N P+I+V NK+D Sbjct: 82 RNALNDRLNQNVTEALSGVDAVVFVVEAMR-FTDADRIVMKQL-PANTPVILVINKIDKN 139 Query: 125 IAQ----RNFYEIYSLDFKEIVE--ISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 A + F + S +FK +SA+H LG + L + + + P +P EM+ + Sbjct: 140 KAGNGGLQEFIDQISAEFKFAGHETVSAKHGLGIANLLARLRPYLPESVPMYPEEMVTD 198 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 75/164 (45%), Gaps = 7/164 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VGRPNVGKSTL+N L+G +T ++ TR+ V+ + DT G + Sbjct: 22 VAIVGRPNVGKSTLMNHLIGQKISITSKKAQTTRNRVTGIYTDDTAQFVFVDTPGFQTKH 81 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 R +L + + +++ + + +++A + F D RIV V+L +NK D Sbjct: 82 R--NALNDRLNQNVTEALSGVDAVVFVVEA-MRFTDAD-RIVMKQLPANTPVILVINKID 137 Query: 326 MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMV 369 LQ+ + G T+S + G G+ +L+ Sbjct: 138 KNKAGNGGLQEFIDQISAEFKFAGH---ETVSAKHGLGIANLLA 178 >gi|168179376|ref|ZP_02614040.1| GTP-binding protein Era [Clostridium botulinum NCTC 2916] gi|182669495|gb|EDT81471.1| GTP-binding protein Era [Clostridium botulinum NCTC 2916] Length = 296 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 55/181 (30%), Positives = 92/181 (50%), Gaps = 6/181 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + IVG PNVGKSTL N ++K+K+++V P TR+ + + VDT GI K Sbjct: 7 VTIVGRPNVGKSTLLNAIMKEKLSIVSCRPQTTRNNIQTILTEDNYQLVFVDTPGIHKPK 66 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + + M A+ + L+LFLI+ D I L++ +P+ +V NK+D Sbjct: 67 H-KLGEYMVKSASDAMKDVDLVLFLINPDEKPGRGDLFIIEQLKEVKVPVFLVLNKIDEN 125 Query: 125 IAQR--NFYEIYS--LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEM-IENNK 179 ++ + YS ++F+EI+ ISA L ++FK + +P +M I+ N+ Sbjct: 126 PQEKVAETLKAYSELMEFEEIIPISALKGKNIDLLKELMFKYIPEGPQYYPEDMIIDQNE 185 Query: 180 R 180 R Sbjct: 186 R 186 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 33/120 (27%), Positives = 59/120 (49%), Gaps = 3/120 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 + +VGRPNVGKSTL+N ++ + + TR+++ N+ + DT G+ KP Sbjct: 7 VTIVGRPNVGKSTLLNAIMKEKLSIVSCRPQTTRNNIQTILTEDNYQLVFVDTPGIHKPK 66 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + VK + +++ + + L++ + DL I++ + V L LNK D Sbjct: 67 H---KLGEYMVKSASDAMKDVDLVLFLINPDEKPGRGDLFIIEQLKEVKVPVFLVLNKID 123 >gi|27364935|ref|NP_760463.1| GTPase Era [Vibrio vulnificus CMCP6] gi|37681014|ref|NP_935623.1| GTP-binding protein Era [Vibrio vulnificus YJ016] gi|320155321|ref|YP_004187700.1| GTP-binding protein Era [Vibrio vulnificus MO6-24/O] gi|31340056|sp|Q8DC75|ERA_VIBVU RecName: Full=GTPase Era gi|61212428|sp|Q7MHN9|ERA_VIBVY RecName: Full=GTPase Era gi|27361081|gb|AAO09990.1| GTP-binding protein Era [Vibrio vulnificus CMCP6] gi|37199764|dbj|BAC95594.1| GTP-binding protein Era [Vibrio vulnificus YJ016] gi|319930633|gb|ADV85497.1| GTP-binding protein Era [Vibrio vulnificus MO6-24/O] Length = 320 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 46/149 (30%), Positives = 78/149 (52%), Gaps = 6/149 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N+++ +K+++ P TR R+ G VDT G+ + Sbjct: 29 IAIVGRPNVGKSTLLNKILGQKISITSRKPQTTRHRIMGVDTDGDYQAIYVDTPGLHIEE 88 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD-- 122 +I + MN ++++ +L+ FL+D T D + + L+K N P+++ NK+D Sbjct: 89 KRAINRLMNRAANSSLSDVNLVFFLVDG-THWTNDDEMVLNKLQKANFPVVLCVNKVDNV 147 Query: 123 ---TRIAQRNFYEIYSLDFKEIVEISAEH 148 + Q ++F ++V ISA+ Sbjct: 148 QDRNEVMQHMMEMSKKMNFVDVVPISAKQ 176 Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 48/180 (26%), Positives = 82/180 (45%), Gaps = 9/180 (5%) Query: 189 ITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNW 248 ++E KS+ IA+VGRPNVGKSTL+N++LG +T + TR + Sbjct: 12 FSTEKKSTSSENQHCGFIAIVGRPNVGKSTLLNKILGQKISITSRKPQTTRHRIMGVDTD 71 Query: 249 KNHPIEIFDTAGMR-KPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIV 307 ++ DT G+ + R L + S+ V L+D T + D ++ Sbjct: 72 GDYQAIYVDTPGLHIEEKRAINRLMNRAANSSLSDVNLV---FFLVDGT-HWTNDDEMVL 127 Query: 308 DSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDL 367 + + VVL +NK D V D+ ++Q + + K + + + IS + G+ +D L Sbjct: 128 NKLQKANFPVVLCVNKVDNVQDRNEVMQHMMEMSKK----MNFVDVVPISAKQGKNIDVL 183 >gi|22298504|ref|NP_681751.1| tRNA modification GTPase TrmE [Thermosynechococcus elongatus BP-1] gi|223635295|sp|P0C8N9|MNME_SYNEL RecName: Full=tRNA modification GTPase mnmE gi|223635296|sp|P0C8P1|MNME_THEEB RecName: Full=tRNA modification GTPase mnmE gi|5420315|emb|CAB46651.1| possible thiophene and furan oxidation protein [Synechococcus elongatus] gi|22294684|dbj|BAC08513.1| thiophen and furan oxidation protein [Thermosynechococcus elongatus BP-1] Length = 469 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 55/216 (25%), Positives = 109/216 (50%), Gaps = 24/216 (11%) Query: 168 PNHPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYN 227 P P + E ++ + + + + + ++ I L++A+VGRPNVGKS+L+N + Sbjct: 189 PLDPAAIAEQIRQLQHQVEAFLATAERGAL--IRTGLKVAIVGRPNVGKSSLLNAWSRSD 246 Query: 228 RLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCE 287 R + G TRD V PI++ DTAG+R+ + +EQ V++S Q+ + + Sbjct: 247 RAIVTDLPGTTRDIVESQLVVGGIPIQVLDTAGIRETDNL---VEQIGVQRSRQAALSAD 303 Query: 288 TTIVLLDATIPFEKQDLRIVDSVFNTG------HAVVLALNKWDMVSDKLNLLQDLRTKA 341 ++++DA+ + D I D + +V++ LNK D++S+ T Sbjct: 304 LILLVIDASQGWTAADQAIYDQLQLKQRRQQAPQSVLVVLNKADLLSE---------TTE 354 Query: 342 IKNLP----QIGDIYINTISGRTGEGLDDLMVSVLE 373 +K++P I + ++ +S R E L+D ++ +++ Sbjct: 355 VKDIPLPIAPIPTVLLSALSQRGIEQLEDAILHLVQ 390 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 42/101 (41%), Positives = 58/101 (57%), Gaps = 5/101 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKS+L N + A+V + PG TRD + Q ++ G+ ++DTAGI + Sbjct: 225 VAIVGRPNVGKSSLLNAWSRSDRAIVTDLPGTTRDIVESQLVVGGIPIQVLDTAGIRETD 284 Query: 65 NC--SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAI 103 N I Q + Q L+ A LIL +ID+ G T D AI Sbjct: 285 NLVEQIGVQRSRQAALS---ADLILLVIDASQGWTAADQAI 322 >gi|322376714|ref|ZP_08051207.1| tRNA modification GTPase TrmE [Streptococcus sp. M334] gi|321282521|gb|EFX59528.1| tRNA modification GTPase TrmE [Streptococcus sp. M334] Length = 457 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 73/120 (60%), Gaps = 5/120 (4%) Query: 207 AVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSR 266 A++GRPNVGKS+L+N LL ++ + +G TRD + N P+++ DTAG+R+ Sbjct: 227 AIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDD 286 Query: 267 ITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 I +EQ V++S ++++ + +++L+A+ P QD ++++ T ++ LNK D+ Sbjct: 287 I---VEQIGVERSKKALKEADLVLLVLNASEPLTAQDRQLLEISQETNR--IILLNKTDL 341 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 42/118 (35%), Positives = 71/118 (60%), Gaps = 5/118 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+++ A+V + G TRD + INGV ++DTAGI + + Sbjct: 227 AIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDD 286 Query: 66 CSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 I +Q+ ++++ A+ EA L+L ++++ +T D + ++ N II+ NK D Sbjct: 287 --IVEQIGVERSKKALKEADLVLLVLNASEPLTAQDRQLLEISQETN--RIILLNKTD 340 >gi|283832042|ref|ZP_06351783.1| GTP-binding protein Era [Citrobacter youngae ATCC 29220] gi|291071661|gb|EFE09770.1| GTP-binding protein Era [Citrobacter youngae ATCC 29220] Length = 301 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 51/178 (28%), Positives = 86/178 (48%), Gaps = 6/178 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N L+ +K+++ TR R+ G VDT G+ + Sbjct: 11 IAIVGRPNVGKSTLLNNLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN +I + L++F+++ TP D + + LR P+I+ NK+D Sbjct: 71 KRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLRDGKAPVILAVNKVDNV 129 Query: 125 IAQRNF-----YEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 + + + ++F +IV ISAE L + ++ K + + P + I + Sbjct: 130 QEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTVAGIVRKHLPEAIHHFPEDYITD 187 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 51/161 (31%), Positives = 81/161 (50%), Gaps = 9/161 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS-VSISWNWKNHPIEIFDTAGMRKP 264 IA+VGRPNVGKSTL+N LLG +T ++ TR V I I + DT G+ Sbjct: 11 IAIVGRPNVGKSTLLNNLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYV-DTPGLHME 69 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 + ++ + K + S+ E I +++ T + D +++ + + V+LA+NK Sbjct: 70 EK--RAINRLMNKAASSSIGDVELVIFVVEGT-RWTPDDEMVLNKLRDGKAPVILAVNKV 126 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLD 365 D V +K +LL L+ A Q+ + I IS TG +D Sbjct: 127 DNVQEKADLLPHLQFLA----SQMNFLDIVPISAETGLNVD 163 >gi|257871382|ref|ZP_05651035.1| tRNA modification GTPase mnmE [Enterococcus gallinarum EG2] gi|257805546|gb|EEV34368.1| tRNA modification GTPase mnmE [Enterococcus gallinarum EG2] Length = 465 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 51/177 (28%), Positives = 98/177 (55%), Gaps = 14/177 (7%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L A++GRPNVGKS+L+N LL + + +G TRD + N + P+++ D Sbjct: 222 KILREGLSTAIIGRPNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLVD 281 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ I E + V++S +++ + +++L+ + +D +++D +G+ Sbjct: 282 TAGIRETEDIVEKI---GVERSRKALSEADLILLVLNQSESLTTEDKQLLD--ITSGNKR 336 Query: 318 VLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEI 374 ++ LNK D+ S ++N Q+ ++N P + IS T EGLD L ++ ++ Sbjct: 337 IILLNKTDLPS-RIN--QEDLVPYLENEPAL------PISVLTSEGLDQLEQAIADL 384 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 46/158 (29%), Positives = 82/158 (51%), Gaps = 3/158 (1%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L++++ A+V + G TRD + + GV +VDTAGI + ++ Sbjct: 231 AIIGRPNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLVDTAGIRETED 290 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 + K +++ A++EA LIL +++ +T D + I++ + +RI Sbjct: 291 I-VEKIGVERSRKALSEADLILLVLNQSESLTTEDKQLLDITSGNKRIILLNKTDLPSRI 349 Query: 126 AQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 Q + + L+ + + IS G +L I +F Sbjct: 350 NQEDL--VPYLENEPALPISVLTSEGLDQLEQAIADLF 385 >gi|269792674|ref|YP_003317578.1| GTP-binding protein Era [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100309|gb|ACZ19296.1| GTP-binding protein Era [Thermanaerovibrio acidaminovorans DSM 6589] Length = 303 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 51/195 (26%), Positives = 93/195 (47%), Gaps = 9/195 (4%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 +A++G PNVGKS+L N LV +K+ V TR + G +G +VDT G+ + Sbjct: 9 CVALLGRPNVGKSSLANALVGEKVMAVSPKAQTTRHAIRGIVQGDGYQIVLVDTPGVHEP 68 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKA-GITPYDHAITSFLRKKNIPIIIVSNKMD 122 ++ + + M Q A+ + I F++D+ + GI+ D + ++++ P ++ NK+D Sbjct: 69 RH-DLGRFMISQIRAALEDVCGICFVVDATSKGISSLDRRVLEWIQEAGRPALLCVNKVD 127 Query: 123 TRIAQRNFYEIYSL-----DFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 + +F+++ +L F +V +SA L + K + P P E + + Sbjct: 128 LLARKDDFWDVVALYQDQYRFDAVVPVSATQGTNLDVLKEAMVKWLPESLPLFPEEFLID 187 Query: 178 NKRNEESPKENITSE 192 R E E I E Sbjct: 188 --RTERFLAEEIIRE 200 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 31/125 (24%), Positives = 61/125 (48%), Gaps = 2/125 (1%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKS+L N L+G + ++ TR ++ + I + DT G+ +P Sbjct: 10 VALLGRPNVGKSSLANALVGEKVMAVSPKAQTTRHAIRGIVQGDGYQIVLVDTPGVHEPR 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 ++ +++ V C V+ + D R+++ + G +L +NK D Sbjct: 70 HDLGRFMISQIRAALEDV--CGICFVVDATSKGISSLDRRVLEWIQEAGRPALLCVNKVD 127 Query: 326 MVSDK 330 +++ K Sbjct: 128 LLARK 132 >gi|163737994|ref|ZP_02145410.1| tRNA modification GTPase TrmE [Phaeobacter gallaeciensis BS107] gi|161388610|gb|EDQ12963.1| tRNA modification GTPase TrmE [Phaeobacter gallaeciensis BS107] Length = 430 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 59/233 (25%), Positives = 99/233 (42%), Gaps = 46/233 (19%) Query: 193 GKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHP 252 G + I +A++G PNVGKSTL+N L G +T +G TRD + + + P Sbjct: 203 GVKMAERIRSGFEVAIIGAPNVGKSTLLNALAGREAAITSEYAGTTRDVIEVRMDLAGLP 262 Query: 253 IEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFN 312 + + DTAG+R+ E + K K+ EK DLR+ + Sbjct: 263 VTLLDTAGLRETDDHVEGIGIKMAKERA-------------------EKADLRVFLTEDR 303 Query: 313 TGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVL 372 T + ++ + +V+ K +L+ D +PQ +SG+TG+G+D L+ + Sbjct: 304 TAIDIDISEDDI-VVAPKADLVGD-------GVPQ------KAVSGKTGQGIDMLIADIT 349 Query: 373 EI--NKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 ++ N+ K I T + KT Y+RL+ + P F Sbjct: 350 KVLRNRAGKVGIATRARHRETMKTA-----------YDRLQSAQDVLRYGPEF 391 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 49/84 (58%), Gaps = 6/84 (7%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI-- 60 + +AI+GAPNVGKSTL N L ++ A+ + G TRD + + + G+ ++DTAG+ Sbjct: 214 FEVAIIGAPNVGKSTLLNALAGREAAITSEYAGTTRDVIEVRMDLAGLPVTLLDTAGLRE 273 Query: 61 ----ADGKNCSIAKQMNDQTELAI 80 +G +AK+ ++ +L + Sbjct: 274 TDDHVEGIGIKMAKERAEKADLRV 297 >gi|116511210|ref|YP_808426.1| GTP-binding protein Era [Lactococcus lactis subsp. cremoris SK11] gi|122940350|sp|Q031W8|ERA_LACLS RecName: Full=GTPase Era gi|116106864|gb|ABJ72004.1| GTPase [Lactococcus lactis subsp. cremoris SK11] Length = 303 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 82/156 (52%), Gaps = 7/156 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKST N ++ +K+A++ + P TR+++ G +DT GI Sbjct: 11 VAILGRPNVGKSTFMNHVMGQKIAIMSDKPQTTRNKIQGIYTTENEQIVFIDTPGIHKPH 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N ++ M + E ++LF++ + + ++ I L+K +P+I+V NK+D + Sbjct: 71 N-ALGDFMVQSAYSTLRECDVVLFMVAADEPRSTGENMIIERLKKAEVPVILVVNKID-K 128 Query: 125 IAQRNFYEIYS-----LDFKEIVEISAEHDLGTSEL 155 I +EI + ++F E+V ISA+ T L Sbjct: 129 IHPDRLFEIVADYTSQMEFSEVVPISAKQGNNTERL 164 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/122 (27%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKST +N ++G + + TR+ + + +N I DT G+ KP Sbjct: 11 VAILGRPNVGKSTFMNHVMGQKIAIMSDKPQTTRNKIQGIYTTENEQIVFIDTPGIHKPH 70 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +L V+ + ++R C+ + ++ A P + I++ + V+L +NK D Sbjct: 71 N---ALGDFMVQSAYSTLRECDVVLFMVAADEPRSTGENMIIERLKKAEVPVILVVNKID 127 Query: 326 MV 327 + Sbjct: 128 KI 129 >gi|56412544|ref|YP_149619.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62181145|ref|YP_217562.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|167549388|ref|ZP_02343147.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168232158|ref|ZP_02657216.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168238325|ref|ZP_02663383.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168261369|ref|ZP_02683342.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168466659|ref|ZP_02700513.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168821430|ref|ZP_02833430.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194469999|ref|ZP_03075983.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194737392|ref|YP_002115643.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197248494|ref|YP_002147538.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197361479|ref|YP_002141115.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198242030|ref|YP_002216647.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200386770|ref|ZP_03213382.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204929711|ref|ZP_03220785.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205353676|ref|YP_002227477.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207857987|ref|YP_002244638.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224582878|ref|YP_002636676.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238912698|ref|ZP_04656535.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|81309622|sp|Q57LD1|ERA_SALCH RecName: Full=GTPase Era gi|81677940|sp|Q5PIG4|ERA_SALPA RecName: Full=GTPase Era gi|226741228|sp|B5F1G0|ERA_SALA4 RecName: Full=GTPase Era gi|226741229|sp|B5FRC4|ERA_SALDC RecName: Full=GTPase Era gi|226741230|sp|B5QTU7|ERA_SALEP RecName: Full=GTPase Era gi|226741231|sp|B5RD48|ERA_SALG2 RecName: Full=GTPase Era gi|226741234|sp|B5BAT1|ERA_SALPK RecName: Full=GTPase Era gi|226741235|sp|B4TS13|ERA_SALSV RecName: Full=GTPase Era gi|254783662|sp|C0PYG8|ERA_SALPC RecName: Full=GTPase Era gi|56126801|gb|AAV76307.1| GTP-binding protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62128778|gb|AAX66481.1| GTPase believed to be involved in coordination of cell cycle, energy metabolism, cell division [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|194456363|gb|EDX45202.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194712894|gb|ACF92115.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195630802|gb|EDX49394.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197092955|emb|CAR58385.1| GTP-binding protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197212197|gb|ACH49594.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197288837|gb|EDY28210.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197936546|gb|ACH73879.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199603868|gb|EDZ02413.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204321430|gb|EDZ06630.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205273457|emb|CAR38434.1| GTP-binding protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205325335|gb|EDZ13174.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205333611|gb|EDZ20375.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205341982|gb|EDZ28746.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205349353|gb|EDZ35984.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206709790|emb|CAR34142.1| GTP-binding protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224467405|gb|ACN45235.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|320087081|emb|CBY96850.1| GTP-binding protein era homolog [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|322613350|gb|EFY10292.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620446|gb|EFY17311.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625086|gb|EFY21915.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629470|gb|EFY26246.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633857|gb|EFY30596.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635463|gb|EFY32174.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322639861|gb|EFY36540.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644253|gb|EFY40797.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649945|gb|EFY46365.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322654872|gb|EFY51189.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658200|gb|EFY54466.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322661728|gb|EFY57946.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669709|gb|EFY65855.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673284|gb|EFY69389.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322674927|gb|EFY71014.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682950|gb|EFY78968.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685611|gb|EFY81606.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322715635|gb|EFZ07206.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323191961|gb|EFZ77199.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323200406|gb|EFZ85487.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201306|gb|EFZ86373.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208376|gb|EFZ93316.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211548|gb|EFZ96386.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323215980|gb|EGA00712.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221761|gb|EGA06169.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225631|gb|EGA09858.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229349|gb|EGA13473.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235336|gb|EGA19420.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323237478|gb|EGA21541.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323245233|gb|EGA29234.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248807|gb|EGA32734.1| GTPase Era [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323254013|gb|EGA37834.1| GTPase Era [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323259061|gb|EGA42709.1| GTPase Era [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261984|gb|EGA45549.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267767|gb|EGA51248.1| GTPase Era [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269674|gb|EGA53126.1| GTPase Era [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326624402|gb|EGE30747.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326628780|gb|EGE35123.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 301 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 53/185 (28%), Positives = 90/185 (48%), Gaps = 20/185 (10%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYG-------QAIINGVIFNIVDT 57 IAIVG PNVGKSTL N+L+ +K+++ TR R+ G QAI VDT Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGPYQAI-------YVDT 63 Query: 58 AGIADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIV 117 G+ + +I + MN +I + L++F+++ TP D + + LR P+I+ Sbjct: 64 PGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLRDGKAPVILA 122 Query: 118 SNKMDTRIAQRNF-----YEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPL 172 NK+D + + + ++F +IV ISAE + + ++ K + + P Sbjct: 123 VNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGMNVDTIAGIVRKHLPEAIHHFPE 182 Query: 173 EMIEN 177 + I + Sbjct: 183 DYITD 187 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 51/161 (31%), Positives = 82/161 (50%), Gaps = 9/161 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS-VSISWNWKNHPIEIFDTAGMRKP 264 IA+VGRPNVGKSTL+N+LLG +T ++ TR V I I + DT G+ Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGPYQAIYV-DTPGLHME 69 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 + ++ + K + S+ E I +++ T + D +++ + + V+LA+NK Sbjct: 70 EK--RAINRLMNKAASSSIGDVELVIFVVEGT-RWTPDDEMVLNKLRDGKAPVILAVNKV 126 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLD 365 D V +K +LL L+ A Q+ + I IS TG +D Sbjct: 127 DNVQEKADLLPHLQFLA----SQMNFLDIVPISAETGMNVD 163 >gi|297585588|ref|YP_003701368.1| tRNA modification GTPase TrmE [Bacillus selenitireducens MLS10] gi|297144045|gb|ADI00803.1| tRNA modification GTPase TrmE [Bacillus selenitireducens MLS10] Length = 458 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 83/166 (50%), Gaps = 21/166 (12%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PNVGKS+L N LV + A+V PG TRD + I GV ++DTAGI + ++ Sbjct: 225 IVGRPNVGKSSLLNSLVHENKAIVTEIPGTTRDVIEEYVNIRGVPLKLLDTAGIRETEDV 284 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 + + +++ + +A LILF+++ +T D + ++ ++ +I+ +D +I Sbjct: 285 -VERLGVERSRQVMIDAELILFVVNYNEPLTDSDRELFELVKDQDTIVIVNKRDLDGQI- 342 Query: 127 QRNFYEIYSLDFKEIVEISAEH---------DLGTSELHSVIFKIF 163 D KE+ +++ +H D G EL I +F Sbjct: 343 ----------DMKEVNQLAGQHPVVTTSLLKDEGVDELEEAIRDLF 378 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/129 (30%), Positives = 68/129 (52%), Gaps = 5/129 (3%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L +VGRPNVGKS+L+N L+ N+ + G TRD + N + P+++ D Sbjct: 215 KILREGLSTVIVGRPNVGKSSLLNSLVHENKAIVTEIPGTTRDVIEEYVNIRGVPLKLLD 274 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ + E L V++S Q + E + +++ P D + + V + V Sbjct: 275 TAGIRETEDVVERL---GVERSRQVMIDAELILFVVNYNEPLTDSDRELFELVKDQDTIV 331 Query: 318 VLALNKWDM 326 + +NK D+ Sbjct: 332 I--VNKRDL 338 >gi|42563304|ref|NP_177924.3| tRNA modification GTPase, putative [Arabidopsis thaliana] gi|51536472|gb|AAU05474.1| At1g78010 [Arabidopsis thaliana] gi|52421301|gb|AAU45220.1| At1g78010 [Arabidopsis thaliana] gi|332197936|gb|AEE36057.1| putative tRNA modification GTPase [Arabidopsis thaliana] Length = 560 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 51/180 (28%), Positives = 95/180 (52%), Gaps = 15/180 (8%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + L+IA+VGRPNVGKS+L+N R + +G TRD V + + PI + D Sbjct: 312 KLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEVAGTTRDVVEANVTVRGVPITLLD 371 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ + I E + V++S + + + I+ + A + ++D ++ + + + Sbjct: 372 TAGIRETNDIVEKI---GVERSETAAKVADVIIMAVSAVEGWTEEDTELLRKI-QSDKPM 427 Query: 318 VLALNKWDMV-SDKLNLLQDLRTKAIKNLPQIGDIYINTI--SGRTGEGLDDLMVSVLEI 374 +L +NK D + L+D R K +++ ++ S TG+G+++L ++LEI Sbjct: 428 ILVMNKIDCAPPGSCDQLEDQRKKE--------EVFHKSVFTSAVTGQGIEELEDAILEI 479 Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 61/190 (32%), Positives = 89/190 (46%), Gaps = 19/190 (10%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKS+L N K + A+V G TRD + + GV ++DTAGI + Sbjct: 320 IAIVGRPNVGKSSLLNAWSKSERAIVTEVAGTTRDVVEANVTVRGVPITLLDTAGIRE-T 378 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRK--KNIPIIIVSNKMD 122 N + K +++E A A +I+ + + G T D T LRK + P+I+V NK+D Sbjct: 379 NDIVEKIGVERSETAAKVADVIIMAVSAVEGWTEED---TELLRKIQSDKPMILVMNKID 435 Query: 123 TRIA--------QRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFK-QKYPNHPLE 173 QR E+ F + V SA G EL I +I + P + Sbjct: 436 CAPPGSCDQLEDQRKKEEV----FHKSVFTSAVTGQGIEELEDAILEILGLDRVPTGGHQ 491 Query: 174 MIENNKRNEE 183 N ++ E+ Sbjct: 492 WTVNQRQCEQ 501 >gi|307709441|ref|ZP_07645898.1| tRNA modification GTPase TrmE [Streptococcus mitis SK564] gi|307619755|gb|EFN98874.1| tRNA modification GTPase TrmE [Streptococcus mitis SK564] Length = 457 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 73/120 (60%), Gaps = 5/120 (4%) Query: 207 AVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSR 266 A++GRPNVGKS+L+N LL ++ + +G TRD + N P+++ DTAG+R+ Sbjct: 227 AIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGIPLKLIDTAGIRETDD 286 Query: 267 ITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 I +EQ V++S ++++ + +++L+A+ P QD ++++ T ++ LNK D+ Sbjct: 287 I---VEQIGVERSKKALKEADLVLLVLNASEPLTAQDRQLLEISQETNR--IILLNKTDL 341 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 41/118 (34%), Positives = 71/118 (60%), Gaps = 5/118 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+++ A+V + G TRD + ING+ ++DTAGI + + Sbjct: 227 AIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGIPLKLIDTAGIRETDD 286 Query: 66 CSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 I +Q+ ++++ A+ EA L+L ++++ +T D + ++ N II+ NK D Sbjct: 287 --IVEQIGVERSKKALKEADLVLLVLNASEPLTAQDRQLLEISQETN--RIILLNKTD 340 >gi|297617800|ref|YP_003702959.1| GTP-binding protein Era [Syntrophothermus lipocalidus DSM 12680] gi|297145637|gb|ADI02394.1| GTP-binding protein Era [Syntrophothermus lipocalidus DSM 12680] Length = 294 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 39/117 (33%), Positives = 63/117 (53%), Gaps = 1/117 (0%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 +IVG PNVGKST N ++ +K+A+V P TR+R+ G +DT GI ++ Sbjct: 9 SIVGRPNVGKSTFLNTVIGQKVAIVSEKPQTTRNRIQGIYTCEQGQIIFIDTPGIHRPRH 68 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + + M EA ++L+++ +K G+ D I FL K + P+ +V NK+D Sbjct: 69 -KLGEYMVRTAHATAREADVVLYMVSAKDGMEKGDEEIIEFLTKTSAPVFLVVNKID 124 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 207 AVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSR 266 ++VGRPNVGKST +N ++G + + TR+ + + + I DT G+ +P Sbjct: 9 SIVGRPNVGKSTFLNTVIGQKVAIVSEKPQTTRNRIQGIYTCEQGQIIFIDTPGIHRPR- 67 Query: 267 ITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 L + V+ + + R + + ++ A EK D I++ + T V L +NK D+ Sbjct: 68 --HKLGEYMVRTAHATAREADVVLYMVSAKDGMEKGDEEIIEFLTKTSAPVFLVVNKIDL 125 Query: 327 V 327 V Sbjct: 126 V 126 >gi|118497735|ref|YP_898785.1| GTP-binding protein Era [Francisella tularensis subsp. novicida U112] gi|194323707|ref|ZP_03057483.1| GTP-binding protein Era [Francisella tularensis subsp. novicida FTE] gi|118423641|gb|ABK90031.1| GTP-binding protein [Francisella novicida U112] gi|194322071|gb|EDX19553.1| GTP-binding protein Era [Francisella tularensis subsp. novicida FTE] Length = 297 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 52/163 (31%), Positives = 82/163 (50%), Gaps = 5/163 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 I+I+G PNVGKSTL N ++K K+++ P TR ++ G + F VDT GI + Sbjct: 7 ISIIGRPNVGKSTLLNNILKYKVSITSRKPQTTRHQITGIKTLGDTQFIYVDTPGIHIKE 66 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I K MN + +ILF+++ T + I L+ IPI +V NK+D + Sbjct: 67 PKAINKFMNKAATTMFKDVDVILFVVEM-GKWTELEDNIVEKLKHSEIPIFLVVNKVDKK 125 Query: 125 IAQRNFYEIYS----LDFKEIVEISAEHDLGTSELHSVIFKIF 163 + I S L F +++ +SA+ +EL S I K+ Sbjct: 126 KSLEAAMFIESIKEKLSFYDVIYVSAKQGHNINELESRIEKLL 168 Score = 39.7 bits (91), Expect = 0.98, Method: Compositional matrix adjust. Identities = 17/38 (44%), Positives = 26/38 (68%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 I+++GRPNVGKSTL+N +L Y +T + TR ++ Sbjct: 7 ISIIGRPNVGKSTLLNNILKYKVSITSRKPQTTRHQIT 44 >gi|13509033|emb|CAC35267.1| GTP binding protein homologue [Campylobacter jejuni] gi|13509035|emb|CAC35268.1| GTP binding protein homologue [Campylobacter jejuni] gi|13509037|emb|CAC35269.1| GTP binding protein homologue [Campylobacter jejuni] gi|13509039|emb|CAC35270.1| GTP binding protein homologue [Campylobacter jejuni] gi|13509043|emb|CAC35272.1| GTP binding protein homologue [Campylobacter jejuni] gi|13509045|emb|CAC35273.1| GTP binding protein homologue [Campylobacter jejuni] gi|13509051|emb|CAC35276.1| GTP binding protein homologue [Campylobacter jejuni] gi|13509053|emb|CAC35277.1| GTP binding protein homologue [Campylobacter jejuni] gi|13509055|emb|CAC35278.1| GTP binding protein homologue [Campylobacter jejuni] gi|37783507|gb|AAP41881.1| GTP-binding protein-like protein [Campylobacter jejuni] gi|37783509|gb|AAP41882.1| GTP-binding protein-like protein [Campylobacter jejuni] gi|37783513|gb|AAP41884.1| GTP-binding protein-like protein [Campylobacter jejuni] gi|37783515|gb|AAP41885.1| GTP-binding protein-like protein [Campylobacter jejuni] Length = 190 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 57/192 (29%), Positives = 97/192 (50%), Gaps = 9/192 (4%) Query: 233 SQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVL 292 S +G T D V+ S K+ IE DTAG+RK +I + LE+ + ++ + + + +++ Sbjct: 3 SIAGTTIDPVNESVVHKDKVIEFVDTAGIRKRGKI-QGLERFALNRTEKILSHSQIALLV 61 Query: 293 LDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD---MVSDKLNLLQDLRTKAIKNLPQIG 349 LDA F + D RI V V++ LNKWD M DK +++LR K L Sbjct: 62 LDAHEGFNELDERIAGLVAKHYLGVIIVLNKWDKSEMDFDKT--VKELRLDRFKFLAYAP 119 Query: 350 DIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNR 409 I ++ +SG+ L D +L+I + + +I TS LN+ ++ +P P + + + Sbjct: 120 VISVSALSGKRVHVLLD---KILQIFENFTQKIQTSKLNTLIENATRAHPLPHDYGKLVK 176 Query: 410 LKYITQIQSSPP 421 + Y Q +PP Sbjct: 177 IYYAVQYDLAPP 188 Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust. Identities = 41/168 (24%), Positives = 69/168 (41%), Gaps = 18/168 (10%) Query: 35 GITRDRLYGQAIINGVIFNIVDTAGIAD-GKNCSIAKQMNDQTELAINEAHLILFLIDSK 93 G T D + + + VDTAGI GK + + ++TE ++ + + L ++D+ Sbjct: 6 GTTIDPVNESVVHKDKVIEFVDTAGIRKRGKIQGLERFALNRTEKILSHSQIALLVLDAH 65 Query: 94 AGITPYDHAITSFLRKKNIPIIIVSNK-------MDTRIAQRNFYEIYSLDFKEIVEISA 146 G D I + K + +IIV NK D + + L + ++ +SA Sbjct: 66 EGFNELDERIAGLVAKHYLGVIIVLNKWDKSEMDFDKTVKELRLDRFKFLAYAPVISVSA 125 Query: 147 EHDLGTSELHSV------IFKIFKQKYPNHPLE-MIENNKRNEESPKE 187 L +H + IF+ F QK L +IEN R P + Sbjct: 126 ---LSGKRVHVLLDKILQIFENFTQKIQTSKLNTLIENATRAHPLPHD 170 >gi|257890523|ref|ZP_05670176.1| tRNA modification GTPase mnmE [Enterococcus faecium 1,231,410] gi|257826883|gb|EEV53509.1| tRNA modification GTPase mnmE [Enterococcus faecium 1,231,410] Length = 339 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 49/170 (28%), Positives = 94/170 (55%), Gaps = 14/170 (8%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L A++GRPNVGKS+L+N LL + + +G TRD + N + P+++ D Sbjct: 96 KVLREGLSTAIIGRPNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLID 155 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ + E + V++S +++ + +++L+ + P +D +++++ +G Sbjct: 156 TAGIRETEDVVERI---GVERSRKALAEADLILLVLNQSEPLTAEDEQLLEA--TSGLKR 210 Query: 318 VLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDL 367 ++ LNK D+ + L Q+ K I+N P + +IS +GLD L Sbjct: 211 IILLNKTDLPA---QLEQEKLKKLIENEP------VFSISVAKNDGLDRL 251 Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 88/163 (53%), Gaps = 13/163 (7%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L++++ A+V + G TRD + + GV ++DTAGI + ++ Sbjct: 105 AIIGRPNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETED 164 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAI---TSFLRKKNIPIIIVSNKMD 122 + + +++ A+ EA LIL +++ +T D + TS L++ II+ NK D Sbjct: 165 V-VERIGVERSRKALAEADLILLVLNQSEPLTAEDEQLLEATSGLKR-----IILLNKTD 218 Query: 123 --TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 ++ Q ++ ++ + + IS + G L S I +F Sbjct: 219 LPAQLEQEKLKKL--IENEPVFSISVAKNDGLDRLESAISDLF 259 >gi|146319108|ref|YP_001198820.1| tRNA modification GTPase TrmE [Streptococcus suis 05ZYH33] gi|146321314|ref|YP_001201025.1| tRNA modification GTPase TrmE [Streptococcus suis 98HAH33] gi|253752156|ref|YP_003025297.1| tRNA modification GTPase TrmE [Streptococcus suis SC84] gi|166234827|sp|A4W2N6|MNME_STRS2 RecName: Full=tRNA modification GTPase mnmE gi|166234829|sp|A4VWD1|MNME_STRSY RecName: Full=tRNA modification GTPase mnmE gi|145689914|gb|ABP90420.1| Predicted GTPase [Streptococcus suis 05ZYH33] gi|145692120|gb|ABP92625.1| Predicted GTPase [Streptococcus suis 98HAH33] gi|251816445|emb|CAZ52081.1| tRNA modification GTPase TrmE [Streptococcus suis SC84] Length = 457 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 40/120 (33%), Positives = 74/120 (61%), Gaps = 5/120 (4%) Query: 207 AVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSR 266 A++GRPNVGKS+L+N LL + + +G TRD + N K P+++ DTAG+R+ Sbjct: 227 AIIGRPNVGKSSLLNNLLREEKAIVTDIAGTTRDVIEEYVNIKGVPLKLIDTAGIRETDD 286 Query: 267 ITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 I E + V++S +++ + +++L+A+ P +QD ++ ++ + + +VL LNK D+ Sbjct: 287 IVEKI---GVERSKKALEEADLILLVLNASEPLTEQDRNLL-AISDMANRIVL-LNKTDL 341 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 40/117 (34%), Positives = 68/117 (58%), Gaps = 3/117 (2%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L++++ A+V + G TRD + I GV ++DTAGI + + Sbjct: 227 AIIGRPNVGKSSLLNNLLREEKAIVTDIAGTTRDVIEEYVNIKGVPLKLIDTAGIRETDD 286 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + K ++++ A+ EA LIL ++++ +T D + + N I++ NK D Sbjct: 287 I-VEKIGVERSKKALEEADLILLVLNASEPLTEQDRNLLAISDMAN--RIVLLNKTD 340 >gi|37783511|gb|AAP41883.1| GTP-binding protein-like protein [Campylobacter jejuni] Length = 190 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 57/192 (29%), Positives = 97/192 (50%), Gaps = 9/192 (4%) Query: 233 SQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVL 292 S +G T D V+ S K+ IE DTAG+RK +I + LE+ + ++ + + + +++ Sbjct: 3 SIAGTTIDPVNESVVHKDKVIEFVDTAGIRKRGKI-QGLERFALNRTEKILSHSQIALLV 61 Query: 293 LDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD---MVSDKLNLLQDLRTKAIKNLPQIG 349 LDA F + D RI V V++ LNKWD M DK +++LR K L Sbjct: 62 LDAHEGFNELDERIAGLVAKHYLGVIIVLNKWDKSEMDFDKT--VKELRLDRFKFLAYAP 119 Query: 350 DIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNR 409 I ++ +SG+ L D +L+I + + +I TS LN+ ++ +P P + + + Sbjct: 120 VISVSALSGKRVHVLLD---KILQIFENFTQKIQTSKLNTLIENATRAHPLPHDYGKLVK 176 Query: 410 LKYITQIQSSPP 421 + Y Q +PP Sbjct: 177 IYYTVQYDLAPP 188 Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust. Identities = 42/173 (24%), Positives = 71/173 (41%), Gaps = 18/173 (10%) Query: 30 VGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD-GKNCSIAKQMNDQTELAINEAHLILF 88 V + G T D + + + VDTAGI GK + + ++TE ++ + + L Sbjct: 1 VSSIAGTTIDPVNESVVHKDKVIEFVDTAGIRKRGKIQGLERFALNRTEKILSHSQIALL 60 Query: 89 LIDSKAGITPYDHAITSFLRKKNIPIIIVSNK-------MDTRIAQRNFYEIYSLDFKEI 141 ++D+ G D I + K + +IIV NK D + + L + + Sbjct: 61 VLDAHEGFNELDERIAGLVAKHYLGVIIVLNKWDKSEMDFDKTVKELRLDRFKFLAYAPV 120 Query: 142 VEISAEHDLGTSELHSV------IFKIFKQKYPNHPLE-MIENNKRNEESPKE 187 + +SA L +H + IF+ F QK L +IEN R P + Sbjct: 121 ISVSA---LSGKRVHVLLDKILQIFENFTQKIQTSKLNTLIENATRAHPLPHD 170 >gi|15672333|ref|NP_266507.1| GTP-binding protein Era [Lactococcus lactis subsp. lactis Il1403] gi|125623240|ref|YP_001031723.1| GTP-binding protein Era [Lactococcus lactis subsp. cremoris MG1363] gi|281490898|ref|YP_003352878.1| GTP-binding protein Era [Lactococcus lactis subsp. lactis KF147] gi|61223689|sp|P0A3C1|ERA_LACLA RecName: Full=GTPase Era gi|61223690|sp|P0A3C2|ERA_LACLM RecName: Full=GTPase Era gi|8163994|gb|AAF73946.1|AF233268_1 GTP-binding protein Era [Lactococcus lactis subsp. cremoris MG1363] gi|12723220|gb|AAK04449.1|AE006272_3 GTP-binding protein Era [Lactococcus lactis subsp. lactis Il1403] gi|124492048|emb|CAL96976.1| GTP-binding protein era homolog [Lactococcus lactis subsp. cremoris MG1363] gi|281374656|gb|ADA64176.1| GTP-binding protein Era [Lactococcus lactis subsp. lactis KF147] gi|300069990|gb|ADJ59390.1| GTP-binding protein Era [Lactococcus lactis subsp. cremoris NZ9000] gi|326405932|gb|ADZ63003.1| GTP-binding protein Era [Lactococcus lactis subsp. lactis CV56] Length = 303 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 82/156 (52%), Gaps = 7/156 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKST N ++ +K+A++ + P TR+++ G +DT GI Sbjct: 11 VAILGRPNVGKSTFMNHVMGQKIAIMSDKPQTTRNKIQGIYTTENEQIVFIDTPGIHKPH 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N ++ M + E ++LF++ + + ++ I L+K +P+I+V NK+D + Sbjct: 71 N-ALGDFMVQSAYSTLRECDVVLFMVAADEPRSTGENMIIERLKKAEVPVILVVNKID-K 128 Query: 125 IAQRNFYEIYS-----LDFKEIVEISAEHDLGTSEL 155 I +EI + ++F E+V ISA+ T L Sbjct: 129 IHPDRLFEIVADYTSQMEFSEVVPISAKQGNNTERL 164 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/122 (27%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKST +N ++G + + TR+ + + +N I DT G+ KP Sbjct: 11 VAILGRPNVGKSTFMNHVMGQKIAIMSDKPQTTRNKIQGIYTTENEQIVFIDTPGIHKPH 70 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +L V+ + ++R C+ + ++ A P + I++ + V+L +NK D Sbjct: 71 N---ALGDFMVQSAYSTLRECDVVLFMVAADEPRSTGENMIIERLKKAEVPVILVVNKID 127 Query: 326 MV 327 + Sbjct: 128 KI 129 >gi|315039281|ref|YP_004032849.1| tRNA modification GTPase TrmE [Lactobacillus amylovorus GRL 1112] gi|325957755|ref|YP_004293167.1| tRNA modification GTPase TrmE [Lactobacillus acidophilus 30SC] gi|312277414|gb|ADQ60054.1| tRNA modification GTPase TrmE [Lactobacillus amylovorus GRL 1112] gi|325334320|gb|ADZ08228.1| tRNA modification GTPase TrmE [Lactobacillus acidophilus 30SC] gi|327184388|gb|AEA32835.1| tRNA modification GTPase TrmE [Lactobacillus amylovorus GRL 1118] Length = 461 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 55/177 (31%), Positives = 89/177 (50%), Gaps = 6/177 (3%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AIVG PNVGKS+L N L + A+V + G TRD L + GV ++DTAGI + Sbjct: 228 AIVGQPNVGKSSLLNYLTQSDKAIVTDVAGTTRDTLEEYVSVKGVPLELIDTAGIHHTDD 287 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 + K ++++ A+ A L+L LID+ +T D A+ + K II+ NK D + Sbjct: 288 -KVEKIGVERSKKALERADLVLLLIDASQELTDEDKALIDETKDKK--RIIILNKSD--L 342 Query: 126 AQR-NFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 Q+ ++ + E++ S + +L VI K+F N +++ N+R Sbjct: 343 GQKLTVDQMKQMTGSEVISTSILKEKNLDQLEEVISKLFFSGIENSNDQVMVTNQRQ 399 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 70/123 (56%), Gaps = 5/123 (4%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 L A+VG+PNVGKS+L+N L ++ + +G TRD++ + K P+E+ DTAG+ Sbjct: 225 LATAIVGQPNVGKSSLLNYLTQSDKAIVTDVAGTTRDTLEEYVSVKGVPLELIDTAGIHH 284 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 + +E+ V++S +++ + ++L+DA+ +D ++D + ++ LNK Sbjct: 285 TD---DKVEKIGVERSKKALERADLVLLLIDASQELTDEDKALIDETKDKKRIII--LNK 339 Query: 324 WDM 326 D+ Sbjct: 340 SDL 342 >gi|282856945|ref|ZP_06266200.1| tRNA modification GTPase TrmE [Pyramidobacter piscolens W5455] gi|282585236|gb|EFB90549.1| tRNA modification GTPase TrmE [Pyramidobacter piscolens W5455] Length = 455 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 74/127 (58%), Gaps = 4/127 (3%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + +R+A+VGRPN GKS+L+N LL +R + + G TRD + ++ P+ + DTA Sbjct: 215 LREGIRVAIVGRPNAGKSSLLNALLKESRAIVTAIPGTTRDVIEAVLTYRGIPLRLVDTA 274 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+ + + +E V+++ +++ + + ++D + P ++D+ V + +T H VV Sbjct: 275 GITE--NYHDEVEAIGVERARAAMKEADVCVWVIDGSEPLHQEDVDRVHELADTPHLVV- 331 Query: 320 ALNKWDM 326 LNK D+ Sbjct: 332 -LNKADL 337 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 61/118 (51%), Gaps = 2/118 (1%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PN GKS+L N L+K+ A+V PG TRD + G+ +VDTAGI + Sbjct: 221 VAIVGRPNAGKSSLLNALLKESRAIVTAIPGTTRDVIEAVLTYRGIPLRLVDTAGITENY 280 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + + ++ A+ EA + +++ID + D + + P ++V NK D Sbjct: 281 HDEVEAIGVERARAAMKEADVCVWVIDGSEPLHQED--VDRVHELADTPHLVVLNKAD 336 >gi|89256163|ref|YP_513525.1| GTP-binding protein Era [Francisella tularensis subsp. holarctica LVS] gi|115314634|ref|YP_763357.1| GTP-binding protein Era [Francisella tularensis subsp. holarctica OSU18] gi|156502202|ref|YP_001428267.1| GTP-binding protein Era [Francisella tularensis subsp. holarctica FTNF002-00] gi|167010561|ref|ZP_02275492.1| GTP-binding protein Era [Francisella tularensis subsp. holarctica FSC200] gi|254367486|ref|ZP_04983512.1| GTP-binding protein [Francisella tularensis subsp. holarctica 257] gi|290954579|ref|ZP_06559200.1| GTP-binding protein Era [Francisella tularensis subsp. holarctica URFT1] gi|295311969|ref|ZP_06802792.1| GTP-binding protein Era [Francisella tularensis subsp. holarctica URFT1] gi|89143994|emb|CAJ79229.1| GTP-binding protein [Francisella tularensis subsp. holarctica LVS] gi|115129533|gb|ABI82720.1| GTP-binding protein [Francisella tularensis subsp. holarctica OSU18] gi|134253302|gb|EBA52396.1| GTP-binding protein [Francisella tularensis subsp. holarctica 257] gi|156252805|gb|ABU61311.1| GTP-binding protein [Francisella tularensis subsp. holarctica FTNF002-00] Length = 297 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 52/163 (31%), Positives = 82/163 (50%), Gaps = 5/163 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 I+I+G PNVGKSTL N ++K K+++ P TR ++ G + F VDT GI + Sbjct: 7 ISIIGRPNVGKSTLLNNILKYKVSITSRKPQTTRHQITGIKTLGDTQFIYVDTPGIHIKE 66 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I K MN + +ILF+++ T + I L+ IPI +V NK+D + Sbjct: 67 PKAINKFMNKAATTMFKDVDVILFVVEM-GKWTELEDNIVEKLKHSEIPIFLVVNKVDKK 125 Query: 125 --IAQRNFYEIY--SLDFKEIVEISAEHDLGTSELHSVIFKIF 163 + F E L F +++ +SA+ +EL S I K+ Sbjct: 126 KSLEAAMFIEYIKEKLSFYDVIYVSAKQGHNINELESRIEKLL 168 Score = 39.7 bits (91), Expect = 0.94, Method: Compositional matrix adjust. Identities = 17/38 (44%), Positives = 26/38 (68%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 I+++GRPNVGKSTL+N +L Y +T + TR ++ Sbjct: 7 ISIIGRPNVGKSTLLNNILKYKVSITSRKPQTTRHQIT 44 >gi|22125198|ref|NP_668621.1| GTP-binding protein Era [Yersinia pestis KIM 10] gi|45442305|ref|NP_993844.1| GTP-binding protein Era [Yersinia pestis biovar Microtus str. 91001] gi|51597205|ref|YP_071396.1| GTP-binding protein Era [Yersinia pseudotuberculosis IP 32953] gi|108808447|ref|YP_652363.1| GTP-binding protein Era [Yersinia pestis Antiqua] gi|108811370|ref|YP_647137.1| GTP-binding protein Era [Yersinia pestis Nepal516] gi|145598836|ref|YP_001162912.1| GTP-binding protein Era [Yersinia pestis Pestoides F] gi|149365389|ref|ZP_01887424.1| putative GTP-binding protein [Yersinia pestis CA88-4125] gi|153948940|ref|YP_001400118.1| GTP-binding protein Era [Yersinia pseudotuberculosis IP 31758] gi|162419723|ref|YP_001607936.1| GTP-binding protein Era [Yersinia pestis Angola] gi|165925230|ref|ZP_02221062.1| GTP-binding protein Era [Yersinia pestis biovar Orientalis str. F1991016] gi|166008313|ref|ZP_02229211.1| GTP-binding protein Era [Yersinia pestis biovar Antiqua str. E1979001] gi|166212599|ref|ZP_02238634.1| GTP-binding protein Era [Yersinia pestis biovar Antiqua str. B42003004] gi|167398745|ref|ZP_02304269.1| GTP-binding protein Era [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167421165|ref|ZP_02312918.1| GTP-binding protein Era [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423101|ref|ZP_02314854.1| GTP-binding protein Era [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167467391|ref|ZP_02332095.1| GTP-binding protein Era [Yersinia pestis FV-1] gi|170023436|ref|YP_001719941.1| GTP-binding protein Era [Yersinia pseudotuberculosis YPIII] gi|186896302|ref|YP_001873414.1| GTP-binding protein Era [Yersinia pseudotuberculosis PB1/+] gi|218929791|ref|YP_002347666.1| GTP-binding protein Era [Yersinia pestis CO92] gi|229838282|ref|ZP_04458441.1| membrane-associated, 16S rRNA-binding GTPase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229895522|ref|ZP_04510693.1| membrane-associated, 16S rRNA-binding GTPase [Yersinia pestis Pestoides A] gi|229898846|ref|ZP_04513991.1| membrane-associated, 16S rRNA-binding GTPase [Yersinia pestis biovar Orientalis str. India 195] gi|229901620|ref|ZP_04516742.1| membrane-associated, 16S rRNA-binding GTPase [Yersinia pestis Nepal516] gi|270489809|ref|ZP_06206883.1| GTP-binding protein Era [Yersinia pestis KIM D27] gi|294504510|ref|YP_003568572.1| GTP-binding protein Era [Yersinia pestis Z176003] gi|21263587|sp|Q8ZD71|ERA_YERPE RecName: Full=GTPase Era gi|81691694|sp|Q667V2|ERA_YERPS RecName: Full=GTPase Era gi|123245663|sp|Q1C554|ERA_YERPA RecName: Full=GTPase Era gi|123373347|sp|Q1CKE3|ERA_YERPN RecName: Full=GTPase Era gi|189037686|sp|A7FFU0|ERA_YERP3 RecName: Full=GTPase Era gi|189037837|sp|A4TKX7|ERA_YERPP RecName: Full=GTPase Era gi|226741407|sp|B2KA46|ERA_YERPB RecName: Full=GTPase Era gi|226741408|sp|A9R403|ERA_YERPG RecName: Full=GTPase Era gi|226741409|sp|B1JRC8|ERA_YERPY RecName: Full=GTPase Era gi|21958063|gb|AAM84872.1|AE013732_4 GTP-binding protein [Yersinia pestis KIM 10] gi|45437169|gb|AAS62721.1| putative GTP-binding protein [Yersinia pestis biovar Microtus str. 91001] gi|51590487|emb|CAH22127.1| putative GTP-binding protein [Yersinia pseudotuberculosis IP 32953] gi|108775018|gb|ABG17537.1| GTP-binding protein [Yersinia pestis Nepal516] gi|108780360|gb|ABG14418.1| putative GTP-binding protein [Yersinia pestis Antiqua] gi|115348402|emb|CAL21338.1| putative GTP-binding protein [Yersinia pestis CO92] gi|145210532|gb|ABP39939.1| GTP-binding protein [Yersinia pestis Pestoides F] gi|149291802|gb|EDM41876.1| putative GTP-binding protein [Yersinia pestis CA88-4125] gi|152960435|gb|ABS47896.1| GTP-binding protein Era [Yersinia pseudotuberculosis IP 31758] gi|162352538|gb|ABX86486.1| GTP-binding protein Era [Yersinia pestis Angola] gi|165922837|gb|EDR39988.1| GTP-binding protein Era [Yersinia pestis biovar Orientalis str. F1991016] gi|165992695|gb|EDR44996.1| GTP-binding protein Era [Yersinia pestis biovar Antiqua str. E1979001] gi|166206530|gb|EDR51010.1| GTP-binding protein Era [Yersinia pestis biovar Antiqua str. B42003004] gi|166960654|gb|EDR56675.1| GTP-binding protein Era [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051249|gb|EDR62657.1| GTP-binding protein Era [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057271|gb|EDR67017.1| GTP-binding protein Era [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169749970|gb|ACA67488.1| GTP-binding protein Era [Yersinia pseudotuberculosis YPIII] gi|186699328|gb|ACC89957.1| GTP-binding protein Era [Yersinia pseudotuberculosis PB1/+] gi|229681549|gb|EEO77643.1| membrane-associated, 16S rRNA-binding GTPase [Yersinia pestis Nepal516] gi|229688394|gb|EEO80465.1| membrane-associated, 16S rRNA-binding GTPase [Yersinia pestis biovar Orientalis str. India 195] gi|229694648|gb|EEO84695.1| membrane-associated, 16S rRNA-binding GTPase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701328|gb|EEO89356.1| membrane-associated, 16S rRNA-binding GTPase [Yersinia pestis Pestoides A] gi|262362498|gb|ACY59219.1| GTP-binding protein Era [Yersinia pestis D106004] gi|262366497|gb|ACY63054.1| GTP-binding protein Era [Yersinia pestis D182038] gi|270338313|gb|EFA49090.1| GTP-binding protein Era [Yersinia pestis KIM D27] gi|294354969|gb|ADE65310.1| GTP-binding protein Era [Yersinia pestis Z176003] gi|320016074|gb|ADV99645.1| membrane-associated, 16S rRNA-binding GTPase [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 303 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 49/176 (27%), Positives = 87/176 (49%), Gaps = 6/176 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N L+ +K+++ P TR R+ G VDT G+ + Sbjct: 12 IAIVGRPNVGKSTLLNELLGQKISITSRKPQTTRHRIMGIHTEGPYQAIYVDTPGLHIEE 71 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD-- 122 +I + MN ++ + L++F+++ T D + + LR P+++ NK+D Sbjct: 72 KRAINRLMNRAASSSLGDVELVIFVVEG-THWTADDEMVVNKLRSLQCPVLLAINKVDNV 130 Query: 123 ---TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 T++ + ++F ++V ISAE + + S++ K + + P + I Sbjct: 131 TDKTKLLPHMQFLSQQMNFLDVVPISAEKGMNVDTIASIVRKHMPEAEHHFPEDYI 186 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 43/134 (32%), Positives = 66/134 (49%), Gaps = 5/134 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMR-KP 264 IA+VGRPNVGKSTL+N LLG +T + TR + + DT G+ + Sbjct: 12 IAIVGRPNVGKSTLLNELLGQKISITSRKPQTTRHRIMGIHTEGPYQAIYVDTPGLHIEE 71 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 R L + S+ V E I +++ T + D +V+ + + V+LA+NK Sbjct: 72 KRAINRLMNRAASSSLGDV---ELVIFVVEGT-HWTADDEMVVNKLRSLQCPVLLAINKV 127 Query: 325 DMVSDKLNLLQDLR 338 D V+DK LL ++ Sbjct: 128 DNVTDKTKLLPHMQ 141 >gi|253753982|ref|YP_003027123.1| tRNA modification GTPase TrmE [Streptococcus suis P1/7] gi|251820228|emb|CAR46651.1| tRNA modification GTPase TrmE [Streptococcus suis P1/7] gi|292558744|gb|ADE31745.1| tRNA modification GTPase TrmE [Streptococcus suis GZ1] gi|319758543|gb|ADV70485.1| tRNA modification GTPase TrmE [Streptococcus suis JS14] Length = 457 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 40/120 (33%), Positives = 74/120 (61%), Gaps = 5/120 (4%) Query: 207 AVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSR 266 A++GRPNVGKS+L+N LL + + +G TRD + N K P+++ DTAG+R+ Sbjct: 227 AIIGRPNVGKSSLLNNLLREEKAIVTDIAGTTRDVIEEYVNIKGVPLKLIDTAGIRETDD 286 Query: 267 ITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 I E + V++S +++ + +++L+A+ P +QD ++ ++ + + +VL LNK D+ Sbjct: 287 IVEKI---GVERSKKALEEADLILLVLNASEPLTEQDRNLL-AISDMANRIVL-LNKTDL 341 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 40/117 (34%), Positives = 68/117 (58%), Gaps = 3/117 (2%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L++++ A+V + G TRD + I GV ++DTAGI + + Sbjct: 227 AIIGRPNVGKSSLLNNLLREEKAIVTDIAGTTRDVIEEYVNIKGVPLKLIDTAGIRETDD 286 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + K ++++ A+ EA LIL ++++ +T D + + N I++ NK D Sbjct: 287 I-VEKIGVERSKKALEEADLILLVLNASEPLTEQDRNLLAISDMAN--RIVLLNKTD 340 >gi|253755917|ref|YP_003029057.1| tRNA modification GTPase TrmE [Streptococcus suis BM407] gi|251818381|emb|CAZ56209.1| tRNA modification GTPase TrmE [Streptococcus suis BM407] Length = 457 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 40/120 (33%), Positives = 74/120 (61%), Gaps = 5/120 (4%) Query: 207 AVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSR 266 A++GRPNVGKS+L+N LL + + +G TRD + N K P+++ DTAG+R+ Sbjct: 227 AIIGRPNVGKSSLLNNLLREEKAIVTDIAGTTRDVIEEYVNIKGVPLKLIDTAGIRETDD 286 Query: 267 ITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 I E + V++S +++ + +++L+A+ P +QD ++ ++ + + +VL LNK D+ Sbjct: 287 IVEKI---GVERSKKALEEADLILLVLNASEPLTEQDRNLL-AISDMANRIVL-LNKTDL 341 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 40/117 (34%), Positives = 68/117 (58%), Gaps = 3/117 (2%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L++++ A+V + G TRD + I GV ++DTAGI + + Sbjct: 227 AIIGRPNVGKSSLLNNLLREEKAIVTDIAGTTRDVIEEYVNIKGVPLKLIDTAGIRETDD 286 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + K ++++ A+ EA LIL ++++ +T D + + N I++ NK D Sbjct: 287 I-VEKIGVERSKKALEEADLILLVLNASEPLTEQDRNLLAISDMAN--RIVLLNKTD 340 >gi|254476302|ref|ZP_05089688.1| tRNA modification GTPase TrmE [Ruegeria sp. R11] gi|214030545|gb|EEB71380.1| tRNA modification GTPase TrmE [Ruegeria sp. R11] Length = 428 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 84/189 (44%), Gaps = 46/189 (24%) Query: 197 VKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIF 256 + I +A+VG PNVGKSTL+N L G +T +G TRD + + + P+ + Sbjct: 207 AERIRSGFEVAIVGAPNVGKSTLLNALAGREAAITSEYAGTTRDVIEVRMDLAGLPVTLL 266 Query: 257 DTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLL----DATIPFEKQDLRIVDSVFN 312 DTAG+R+ E + + KK + T + + L D +P QD Sbjct: 267 DTAGLRETDDHVEGIGIELAKKRAE---TADLRVFLAGDRNDIDLPIRDQD--------- 314 Query: 313 TGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVL 372 +VL K D++SD +P ISG+TG+G+DDL V Sbjct: 315 ----IVLK-PKADLLSD---------------VP-------GAISGKTGQGVDDL---VR 344 Query: 373 EINKLWKTR 381 EI ++ K R Sbjct: 345 EIGRILKDR 353 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 6/84 (7%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI-- 60 + +AIVGAPNVGKSTL N L ++ A+ + G TRD + + + G+ ++DTAG+ Sbjct: 214 FEVAIVGAPNVGKSTLLNALAGREAAITSEYAGTTRDVIEVRMDLAGLPVTLLDTAGLRE 273 Query: 61 ----ADGKNCSIAKQMNDQTELAI 80 +G +AK+ + +L + Sbjct: 274 TDDHVEGIGIELAKKRAETADLRV 297 >gi|206891076|ref|YP_002248190.1| GTP-binding protein Era [Thermodesulfovibrio yellowstonii DSM 11347] gi|206743014|gb|ACI22071.1| GTP-binding protein Era [Thermodesulfovibrio yellowstonii DSM 11347] Length = 289 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 53/174 (30%), Positives = 95/174 (54%), Gaps = 14/174 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A++G PNVGKSTL N ++ +K+++V P TR+R+ G + +DT GI + Sbjct: 6 VALIGRPNVGKSTLINTVIGEKVSIVTEKPQTTRNRITGIKNLPNAQIIFIDTPGIHKPR 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + + M + + A++ LI+F+++ +A + +I L+K N P+I+ NK+DT Sbjct: 66 H-KLGEFMVKEAQEAMDMVDLIVFMVEPEAPGND-ELSIIERLKKLNKPVILAINKIDT- 122 Query: 125 IAQRNFYEIYSL-----DFKEIVEISAEHDLGTSEL-HSVIFKIFKQKYPNHPL 172 +A++N + L F+EI+ ISA G L +IF + P+ P+ Sbjct: 123 VAKQNLLPLIELYNDLHPFQEIIPISALKKDGIERLVERIIFYL-----PDSPI 171 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/129 (31%), Positives = 70/129 (54%), Gaps = 5/129 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKSTLIN ++G + + TR+ ++ N N I DT G+ KP Sbjct: 6 VALIGRPNVGKSTLINTVIGEKVSIVTEKPQTTRNRITGIKNLPNAQIIFIDTPGIHKPR 65 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + VK++ +++ + + +++ P +L I++ + V+LA+NK D Sbjct: 66 H---KLGEFMVKEAQEAMDMVDLIVFMVEPEAP-GNDELSIIERLKKLNKPVILAINKID 121 Query: 326 MVSDKLNLL 334 V+ K NLL Sbjct: 122 TVA-KQNLL 129 >gi|327460276|gb|EGF06613.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis SK1057] Length = 457 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 45/137 (32%), Positives = 82/137 (59%), Gaps = 7/137 (5%) Query: 207 AVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSR 266 A++GRPNVGKS+L+N LL ++ + G TRD + N K P+++ DTAG+R+ Sbjct: 227 AIIGRPNVGKSSLLNNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDD 286 Query: 267 ITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 + +EQ V++S ++++ + +++L+A P QD ++++ ++ ++ LNK D+ Sbjct: 287 L---VEQIGVERSKKALQEADLVLLVLNANEPLTDQDRQLLEISKDSNR--IILLNKTDL 341 Query: 327 VSDKLNLLQDLRTKAIK 343 +K+ L Q L T IK Sbjct: 342 -EEKIELDQ-LPTDVIK 356 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 40/118 (33%), Positives = 69/118 (58%), Gaps = 5/118 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+++ A+V + G TRD + I GV ++DTAGI + + Sbjct: 227 AIIGRPNVGKSSLLNNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDD 286 Query: 66 CSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + +Q+ ++++ A+ EA L+L ++++ +T D + + N II+ NK D Sbjct: 287 --LVEQIGVERSKKALQEADLVLLVLNANEPLTDQDRQLLEISKDSN--RIILLNKTD 340 >gi|62259927|gb|AAX77873.1| unknown protein [synthetic construct] Length = 332 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 52/163 (31%), Positives = 82/163 (50%), Gaps = 5/163 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 I+I+G PNVGKSTL N ++K K+++ P TR ++ G + F VDT GI + Sbjct: 33 ISIIGRPNVGKSTLLNNILKYKVSITSRKPQTTRHQITGIKTLGDTQFIYVDTPGIHIKE 92 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I K MN + +ILF+++ T + I L+ IPI +V NK+D + Sbjct: 93 PKAINKFMNKAATTMFKDVDVILFVVEM-GKWTELEDNIVEKLKHSEIPIFLVVNKVDKK 151 Query: 125 IAQRNFYEIYS----LDFKEIVEISAEHDLGTSELHSVIFKIF 163 + I S L F +++ +SA+ +EL S I K+ Sbjct: 152 KSLEAAMFIESIKEKLSFYDVIYVSAKQGHNINELESRIEKLL 194 Score = 40.0 bits (92), Expect = 0.82, Method: Compositional matrix adjust. Identities = 17/38 (44%), Positives = 26/38 (68%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 I+++GRPNVGKSTL+N +L Y +T + TR ++ Sbjct: 33 ISIIGRPNVGKSTLLNNILKYKVSITSRKPQTTRHQIT 70 >gi|223932526|ref|ZP_03624527.1| tRNA modification GTPase TrmE [Streptococcus suis 89/1591] gi|302024152|ref|ZP_07249363.1| tRNA modification GTPase TrmE [Streptococcus suis 05HAS68] gi|330833106|ref|YP_004401931.1| tRNA modification GTPase TrmE [Streptococcus suis ST3] gi|223898797|gb|EEF65157.1| tRNA modification GTPase TrmE [Streptococcus suis 89/1591] gi|329307329|gb|AEB81745.1| tRNA modification GTPase TrmE [Streptococcus suis ST3] Length = 457 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 40/120 (33%), Positives = 74/120 (61%), Gaps = 5/120 (4%) Query: 207 AVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSR 266 A++GRPNVGKS+L+N LL + + +G TRD + N K P+++ DTAG+R+ Sbjct: 227 AIIGRPNVGKSSLLNNLLREEKAIVTDIAGTTRDVIEEYVNIKGVPLKLIDTAGIRETDD 286 Query: 267 ITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 I E + V++S +++ + +++L+A+ P +QD ++ ++ + + +VL LNK D+ Sbjct: 287 IVEKI---GVERSKKALEEADLILLVLNASEPLTEQDRNLL-AISDLANRIVL-LNKTDL 341 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 41/120 (34%), Positives = 69/120 (57%), Gaps = 9/120 (7%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L++++ A+V + G TRD + I GV ++DTAGI + + Sbjct: 227 AIIGRPNVGKSSLLNNLLREEKAIVTDIAGTTRDVIEEYVNIKGVPLKLIDTAGIRETDD 286 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDH---AITSFLRKKNIPIIIVSNKMD 122 + K ++++ A+ EA LIL ++++ +T D AI+ + I++ NK D Sbjct: 287 I-VEKIGVERSKKALEEADLILLVLNASEPLTEQDRNLLAISDLANR-----IVLLNKTD 340 >gi|315282359|ref|ZP_07870786.1| GTP-binding protein Era [Listeria marthii FSL S4-120] gi|313613991|gb|EFR87708.1| GTP-binding protein Era [Listeria marthii FSL S4-120] Length = 301 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 49/150 (32%), Positives = 81/150 (54%), Gaps = 13/150 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N ++ +K+A++ + TR+++ G + +DT GI K Sbjct: 10 VAIVGRPNVGKSTLLNHIIGQKIAIMSDKAQTTRNKVQGVYTTDESQIIFIDTPGIHKPK 69 Query: 65 NCSIAKQMNDQTELAIN---EAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 + K + ++A+N E LI F+ID+ G D I L+ P+ ++ NK+ Sbjct: 70 H----KLGDFMVKIALNTFQEVDLIYFVIDASTGFGRGDEFIIEKLKNVQTPVFLLINKI 125 Query: 122 DTRIAQRNFYEIYS-----LDFKEIVEISA 146 D IA + +++ +DF+EI+ ISA Sbjct: 126 DL-IAPEDLFKLIEQYRELMDFEEIIPISA 154 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 42/144 (29%), Positives = 74/144 (51%), Gaps = 8/144 (5%) Query: 200 ISKPLR---IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIF 256 +S+P + +A+VGRPNVGKSTL+N ++G + ++ TR+ V + I Sbjct: 1 MSEPFKSGFVAIVGRPNVGKSTLLNHIIGQKIAIMSDKAQTTRNKVQGVYTTDESQIIFI 60 Query: 257 DTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHA 316 DT G+ KP L VK ++ + + + ++DA+ F + D I++ + N Sbjct: 61 DTPGIHKPKH---KLGDFMVKIALNTFQEVDLIYFVIDASTGFGRGDEFIIEKLKNVQTP 117 Query: 317 VVLALNKWDMVS--DKLNLLQDLR 338 V L +NK D+++ D L++ R Sbjct: 118 VFLLINKIDLIAPEDLFKLIEQYR 141 >gi|300812005|ref|ZP_07092461.1| tRNA modification GTPase TrmE [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300497031|gb|EFK32097.1| tRNA modification GTPase TrmE [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 461 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 58/177 (32%), Positives = 88/177 (49%), Gaps = 6/177 (3%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AIVG PNVGKS+L N L + A+V + G TRD L + GV ++DTAGI ++ Sbjct: 228 AIVGRPNVGKSSLLNYLTQSDKAIVTDVAGTTRDTLEEFVSVKGVPLELIDTAGIHHTED 287 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 + K ++++ AI +A LIL L+D +T D + K IIV NK D + Sbjct: 288 -QVEKIGVERSKKAIAQADLILLLLDGSQELTEEDRRLLELTAGKK--RIIVLNKTD--L 342 Query: 126 AQR-NFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 Q+ EI E++ S EL ++I K+F + N +++ N+R Sbjct: 343 GQKLTAAEIAKESGSEVISTSIMMKENLDELEALIKKLFFKGIENSNDQVLVTNQRQ 399 Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 72/123 (58%), Gaps = 5/123 (4%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 L+ A+VGRPNVGKS+L+N L ++ + +G TRD++ + K P+E+ DTAG+ Sbjct: 225 LKTAIVGRPNVGKSSLLNYLTQSDKAIVTDVAGTTRDTLEEFVSVKGVPLELIDTAGIHH 284 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 + +E+ V++S +++ + ++LLD + ++D R+++ G ++ LNK Sbjct: 285 TE---DQVEKIGVERSKKAIAQADLILLLLDGSQELTEEDRRLLE--LTAGKKRIIVLNK 339 Query: 324 WDM 326 D+ Sbjct: 340 TDL 342 >gi|300776911|ref|ZP_07086769.1| tRNA modification GTPase TrmE [Chryseobacterium gleum ATCC 35910] gi|300502421|gb|EFK33561.1| tRNA modification GTPase TrmE [Chryseobacterium gleum ATCC 35910] Length = 461 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 64/122 (52%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++G+PN GKSTL+N LL R + + +G TRD++ + K H + DTAG+R+ Sbjct: 220 VAIIGKPNAGKSTLLNSLLKEERAIVSNIAGTTRDTIEEVLHIKGHAFRLIDTAGLRET- 278 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + +E VKK+ + V + L DA +D+ ++ S+ +++ K D Sbjct: 279 --VDEIEAIGVKKAKEKVENANILVYLADAATEDFSEDIEMIQSLVREDLKLIICATKID 336 Query: 326 MV 327 V Sbjct: 337 EV 338 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 66/119 (55%), Gaps = 1/119 (0%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 +AI+G PN GKSTL N L+K++ A+V N G TRD + I G F ++DTAG+ + Sbjct: 219 AVAIIGKPNAGKSTLLNSLLKEERAIVSNIAGTTRDTIEEVLHIKGHAFRLIDTAGLRET 278 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + A + E + A+++++L D+ D + L ++++ +II + K+D Sbjct: 279 VDEIEAIGVKKAKE-KVENANILVYLADAATEDFSEDIEMIQSLVREDLKLIICATKID 336 >gi|283786182|ref|YP_003366047.1| GTP-binding protein [Citrobacter rodentium ICC168] gi|282949636|emb|CBG89255.1| GTP-binding protein [Citrobacter rodentium ICC168] Length = 301 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 49/178 (27%), Positives = 87/178 (48%), Gaps = 6/178 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N+L+ +K+++ TR R+ G VDT G+ + Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN +I + L++F+++ TP D + + LR P+I+ NK+D Sbjct: 71 KRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLRDGKAPVILAVNKVDNV 129 Query: 125 IAQRNF-----YEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 + + + ++F +IV +SAE + + ++ K + + P + I + Sbjct: 130 QEKADLLPHLQFLASQMNFLDIVPMSAETGMNVDTIAGIVRKHLPEAVHHFPEDYITD 187 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 50/161 (31%), Positives = 82/161 (50%), Gaps = 9/161 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS-VSISWNWKNHPIEIFDTAGMRKP 264 IA+VGRPNVGKSTL+N+LLG +T ++ TR V I I + DT G+ Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYV-DTPGLHME 69 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 + ++ + K + S+ E I +++ T + D +++ + + V+LA+NK Sbjct: 70 EK--RAINRLMNKAASSSIGDVELVIFVVEGT-RWTPDDEMVLNKLRDGKAPVILAVNKV 126 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLD 365 D V +K +LL L+ A Q+ + I +S TG +D Sbjct: 127 DNVQEKADLLPHLQFLA----SQMNFLDIVPMSAETGMNVD 163 >gi|94497605|ref|ZP_01304174.1| GTP-binding protein Era [Sphingomonas sp. SKA58] gi|94423022|gb|EAT08054.1| GTP-binding protein Era [Sphingomonas sp. SKA58] Length = 302 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 58/180 (32%), Positives = 82/180 (45%), Gaps = 13/180 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVGAPN GKSTL N LV +K+A+ TR R+ G AI +VDT GI K Sbjct: 13 VAIVGAPNAGKSTLVNALVGQKVAITSPKAQTTRTRVMGVAIEGDAQIVLVDTPGIFAPK 72 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + M A LI ++D KAG+ P I L ++ +V NK+D Sbjct: 73 R-RLDRAMVQAAWGGAQGADLIALVVDGKAGLGPKMEPIVEALVHRSERKWLVLNKVDIA 131 Query: 125 IAQR------NFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 I ++ YE + F+E ISA+ G ++L + F P P E+ Sbjct: 132 IKEKLLVHTQKLYE--RVGFEETFFISAQTGDGLAQLKTA----FADAMPQGPWHFPEDQ 185 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 43/162 (26%), Positives = 74/162 (45%), Gaps = 8/162 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VG PN GKSTL+N L+G +T ++ TR V + I + DT G+ P Sbjct: 13 VAIVGAPNAGKSTLVNALVGQKVAITSPKAQTTRTRVMGVAIEGDAQIVLVDTPGIFAPK 72 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 R L++ V+ + + + +++D + IV+++ + L LNK D Sbjct: 73 R---RLDRAMVQAAWGGAQGADLIALVVDGKAGLGPKMEPIVEALVHRSERKWLVLNKVD 129 Query: 326 MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDL 367 + + + L K ++G IS +TG+GL L Sbjct: 130 IA-----IKEKLLVHTQKLYERVGFEETFFISAQTGDGLAQL 166 >gi|307069605|ref|YP_003878082.1| putative GTP-binding protein engA [Candidatus Zinderia insecticola CARI] gi|306482865|gb|ADM89736.1| putative GTP-binding protein engA [Candidatus Zinderia insecticola CARI] Length = 421 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 39/107 (36%), Positives = 63/107 (58%), Gaps = 1/107 (0%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 M + I ++G VGKST+FN+L K A++ N T DR YG F I+DT Sbjct: 1 MCFIICLIGNHKVGKSTIFNKLTNTKNAIISNKKYFTTDRKYGICNFKKFKFKIIDTPPF 60 Query: 61 ADGKNCSI-AKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF 106 N SI +K++ Q ++AI+E+++ILF++D+K G+T D ++ + Sbjct: 61 NFFYNNSILSKKLKFQIKIAISESNIILFIVDNKKGLTYNDIFLSDY 107 >gi|237742515|ref|ZP_04572996.1| GTP binding protein [Fusobacterium sp. 4_1_13] gi|229430163|gb|EEO40375.1| GTP binding protein [Fusobacterium sp. 4_1_13] Length = 298 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 41/126 (32%), Positives = 71/126 (56%), Gaps = 5/126 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IAVVGRPNVGKSTLIN+L+ + ++G TRD++ N+K++ DT G+ KP Sbjct: 6 IAVVGRPNVGKSTLINKLVSEKVAIVSDKAGTTRDNIKGILNFKDNQYIFIDTPGIHKPQ 65 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHA--VVLALNK 323 + L + +++ ++ + + L+DA+ P D+ ++D + +L +NK Sbjct: 66 HL---LGEYMTNIAVKILKDVDIILFLIDASKPIGTGDMFVMDRINENAKKKPKILLVNK 122 Query: 324 WDMVSD 329 D++SD Sbjct: 123 VDLISD 128 Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 50/177 (28%), Positives = 88/177 (49%), Gaps = 8/177 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTL N+LV +K+A+V + G TRD + G + +DT GI + Sbjct: 6 IAVVGRPNVGKSTLINKLVSEKVAIVSDKAGTTRDNIKGILNFKDNQYIFIDTPGIHKPQ 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRK--KNIPIIIVSNKMD 122 + + + M + + + +ILFLID+ I D + + + K P I++ NK+D Sbjct: 66 HL-LGEYMTNIAVKILKDVDIILFLIDASKPIGTGDMFVMDRINENAKKKPKILLVNKVD 124 Query: 123 -----TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEM 174 + + + +F +I+ +S + G S+L + ++ +P +M Sbjct: 125 LISDEQKEEKLKEIKEKLGEFNKIIFVSGMYSFGISQLLEALDPYLEEGVKYYPDDM 181 >gi|126667176|ref|ZP_01738150.1| GTP-binding protein Era [Marinobacter sp. ELB17] gi|126628332|gb|EAZ98955.1| GTP-binding protein Era [Marinobacter sp. ELB17] Length = 305 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 55/197 (27%), Positives = 94/197 (47%), Gaps = 11/197 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N ++ +K+++ P TR ++ G I V VDT G+ + + Sbjct: 17 VAIVGRPNVGKSTLMNHILGQKLSITSRKPQTTRHQVLGIKTIGPVQAVYVDTPGMHEEE 76 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN A+ +++F++D A T D + L P+I+ NK+D + Sbjct: 77 PRAINRYMNKAATSALKGVDVVVFVLDQLAWTTA-DELVLEKLSSLKCPVILAINKVD-K 134 Query: 125 IAQRN----FYEIYS--LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 I +R ++ S DF E++ +SA + L + + Q +P + I + Sbjct: 135 IEKRETLLPHLDMLSRKRDFAEMIPVSALRETNLVPLEECVGRFLPQSVHFYPDDQITDR 194 Query: 179 KRN---EESPKENITSE 192 E +E IT + Sbjct: 195 SERFMASEMVREKITRQ 211 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 38/138 (27%), Positives = 69/138 (50%), Gaps = 15/138 (10%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV----SISWNWKNHPIEI--FDTA 259 +A+VGRPNVGKSTL+N +LG +T + TR V +I P++ DT Sbjct: 17 VAIVGRPNVGKSTLMNHILGQKLSITSRKPQTTRHQVLGIKTIG------PVQAVYVDTP 70 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 GM + ++ + K + +++ + + +LD + + D +++ + + V+L Sbjct: 71 GMHEEE--PRAINRYMNKAATSALKGVDVVVFVLD-QLAWTTADELVLEKLSSLKCPVIL 127 Query: 320 ALNKWDMVSDKLNLLQDL 337 A+NK D + + LL L Sbjct: 128 AINKVDKIEKRETLLPHL 145 >gi|304316658|ref|YP_003851803.1| GTP-binding protein Era [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778160|gb|ADL68719.1| GTP-binding protein Era [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 299 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 50/149 (33%), Positives = 84/149 (56%), Gaps = 13/149 (8%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIV--DTAGIADG 63 A++G NVGKSTL N L+++K+A+ + P TR+ + Q I+ G + +V DT GI Sbjct: 9 ALIGRTNVGKSTLLNALLEEKVAITSDKPQTTRNTI--QGILTGEDYQVVFIDTPGIHKP 66 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 K+ +++ M + + + E LI+++++ A + P D I L + P+I+V NK+DT Sbjct: 67 KH-KLSEIMIESVKKTLTEVDLIIYMVEPDAEVGPGDEYIIEHLISIDTPVILVINKIDT 125 Query: 124 RIAQ------RNFYEIYSLDFKEIVEISA 146 + NF Y +FK+I+ ISA Sbjct: 126 VPHETVDKTIENFKAQY--NFKDILPISA 152 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 62/121 (51%), Gaps = 3/121 (2%) Query: 207 AVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSR 266 A++GR NVGKSTL+N LL +T + TR+++ +++ + DT G+ KP Sbjct: 9 ALIGRTNVGKSTLLNALLEEKVAITSDKPQTTRNTIQGILTGEDYQVVFIDTPGIHKPKH 68 Query: 267 ITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 + ++VKK++ V + I +++ D I++ + + V+L +NK D Sbjct: 69 KLSEIMIESVKKTLTEV---DLIIYMVEPDAEVGPGDEYIIEHLISIDTPVILVINKIDT 125 Query: 327 V 327 V Sbjct: 126 V 126 >gi|183219714|ref|YP_001837710.1| tRNA modification GTPase TrmE [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189909849|ref|YP_001961404.1| tRNA modification GTPase TrmE [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|205415774|sp|B0SAE4|MNME_LEPBA RecName: Full=tRNA modification GTPase mnmE gi|205415775|sp|B0SJ24|MNME_LEPBP RecName: Full=tRNA modification GTPase mnmE gi|167774525|gb|ABZ92826.1| tRNA modification GTPase TrmE [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167778136|gb|ABZ96434.1| GTPase involved in tRNA modification and in thiophene and furan oxidation [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 461 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 72/263 (27%), Positives = 124/263 (47%), Gaps = 40/263 (15%) Query: 114 IIIVSNKMDTRIAQRN-FYEIYSLDFK---EIV----EISAEHDLGTSELHSVIFKIFKQ 165 +I +K + +AQ+N F EI L K +++ E AE D T +L Sbjct: 138 LIEARSKYELELAQKNVFGEITKLSSKIRSDLISLKAECEAEIDFSTEDL---------- 187 Query: 166 KYPNHPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVV--GRPNVGKSTLINRL 223 E +E K + K + K S + S L+ VV G PN GKS+L+N L Sbjct: 188 -----TFESLEERKNRMVALKNLCSKLIKDSERAESYILQSTVVLYGEPNTGKSSLMNLL 242 Query: 224 LGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSV 283 +G +R + G TRD ++ + PI + DTAG+R T+++EQ +++S + Sbjct: 243 IGKDRSIISDVPGTTRDYIAEELSLDGIPIRLVDTAGIRD---TTDNIEQMGIERSKREA 299 Query: 284 RTCETTIVLLDATIPFEKQD--LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKA 341 + + L+D ++PFEKQ L+ D +F + ++ NK D + T++ Sbjct: 300 DSANVKLFLIDTSLPFEKQSFLLKHKDRLFGS----LIVANKIDSKHPSWH------TES 349 Query: 342 IKNLPQIGDIYINTISGRTGEGL 364 I ++ + + I+ IS +T +G+ Sbjct: 350 IHDIQEEFQLTISEISCKTKQGI 372 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 41/124 (33%), Positives = 74/124 (59%), Gaps = 9/124 (7%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+ + G PN GKS+L N L+ K +++ + PG TRD + + ++G+ +VDTAGI D Sbjct: 224 TVVLYGEPNTGKSSLMNLLIGKDRSIISDVPGTTRDYIAEELSLDGIPIRLVDTAGIRDT 283 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPI---IIVSNK 120 + +I + ++++ + A++ LFLID+ P++ SFL K + +IV+NK Sbjct: 284 TD-NIEQMGIERSKREADSANVKLFLIDTS---LPFEK--QSFLLKHKDRLFGSLIVANK 337 Query: 121 MDTR 124 +D++ Sbjct: 338 IDSK 341 >gi|332800542|ref|YP_004462041.1| tRNA modification GTPase mnmE [Tepidanaerobacter sp. Re1] gi|332698277|gb|AEE92734.1| tRNA modification GTPase mnmE [Tepidanaerobacter sp. Re1] Length = 462 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 59/169 (34%), Positives = 87/169 (51%), Gaps = 21/169 (12%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 I+G NVGKS+L N L++++ A+V + PG TRD + I G+ I+DTAGI Sbjct: 229 ILGNTNVGKSSLLNALLQEERAIVTDIPGTTRDIIEEYIDIQGIPIKIIDTAGI------ 282 Query: 67 SIAKQMNDQTE-LAIN-------EAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVS 118 +Q D+ E + IN EA L+L +ID +T D + + K I V Sbjct: 283 ---RQTTDEVEKIGINRAMKHLQEAELVLLMIDVSRKLTDDDKRLIELVGDKT--TITVI 337 Query: 119 NKMDTRIAQRNFYEIYSL-DFKEIVEISAEHDLGTSELHSVIFKIFKQK 166 NK+D +A + YEI L +IV++SA G EL +VI+ +K Sbjct: 338 NKVDLPVAV-DEYEIKKLVPEAKIVKVSALKQEGIDELKTVIYDTITEK 385 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 57/226 (25%), Positives = 107/226 (47%), Gaps = 18/226 (7%) Query: 101 HAITSFLRKKNIPIIIVSNKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 A+ +R K + V+N+ T +I S I I A D ++ Sbjct: 135 EAVIDIIRAKTDRALAVANRRLTGEFSEKISKIRSNLLNVIAHIEANIDFPEDDIPEAEP 194 Query: 161 KIFKQKYPNHPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLI 220 + Q+ N+ L+M+E+ R+ S + I EG S++ ++G NVGKS+L+ Sbjct: 195 EYISQEI-NNVLKMVEDLLRSAGSGR--ILREGLSTL----------ILGNTNVGKSSLL 241 Query: 221 NRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSM 280 N LL R + G TRD + + + PI+I DTAG+R+ T+ +E+ + ++M Sbjct: 242 NALLQEERAIVTDIPGTTRDIIEEYIDIQGIPIKIIDTAGIRQT---TDEVEKIGINRAM 298 Query: 281 QSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 + ++ E ++++D + D R+++ V + + +NK D+ Sbjct: 299 KHLQEAELVLLMIDVSRKLTDDDKRLIELVGD--KTTITVINKVDL 342 >gi|315640365|ref|ZP_07895480.1| tRNA modification GTPase TrmE [Enterococcus italicus DSM 15952] gi|315483870|gb|EFU74351.1| tRNA modification GTPase TrmE [Enterococcus italicus DSM 15952] Length = 465 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 50/177 (28%), Positives = 94/177 (53%), Gaps = 14/177 (7%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L ++GRPNVGKS+L+N LL + + +G TRD + N + P+++ D Sbjct: 222 KILREGLNTTIIGRPNVGKSSLLNHLLREEKAIVTDVAGTTRDVIEEYVNVRGVPLKLVD 281 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ I E + V++S Q++ + +++L+ + P ++D +++ + T V Sbjct: 282 TAGIRETEDIVERI---GVQRSRQALAKADLILLVLNQSEPLSEEDRQLLQATDATKRIV 338 Query: 318 VLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEI 374 + LNK D+ S L A+ +L +GD + +S GLD L ++ ++ Sbjct: 339 L--LNKTDLPS-------QLDRSALASL--VGDAPVFEVSVLENAGLDKLEQAIADL 384 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/142 (27%), Positives = 72/142 (50%), Gaps = 14/142 (9%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 I+G PNVGKS+L N L++++ A+V + G TRD + + GV +VDTAGI + ++ Sbjct: 232 IIGRPNVGKSSLLNHLLREEKAIVTDVAGTTRDVIEEYVNVRGVPLKLVDTAGIRETEDI 291 Query: 67 --SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITS---------FLRKKNIPII 115 I Q + Q A+ +A LIL +++ ++ D + L K ++P Sbjct: 292 VERIGVQRSRQ---ALAKADLILLVLNQSEPLSEEDRQLLQATDATKRIVLLNKTDLPSQ 348 Query: 116 IVSNKMDTRIAQRNFYEIYSLD 137 + + + + + +E+ L+ Sbjct: 349 LDRSALASLVGDAPVFEVSVLE 370 >gi|313124784|ref|YP_004035043.1| tRNA modification GTPase mnme [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312281347|gb|ADQ62066.1| tRNA modification GTPase mnmE [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 461 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 58/177 (32%), Positives = 88/177 (49%), Gaps = 6/177 (3%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AIVG PNVGKS+L N L + A+V + G TRD L + GV ++DTAGI ++ Sbjct: 228 AIVGRPNVGKSSLLNYLTQSDKAIVTDVAGTTRDTLEEFVSVKGVPLELIDTAGIHHTED 287 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 + K ++++ AI +A LIL L+D +T D + K IIV NK D + Sbjct: 288 -QVEKIGVERSKKAIAQADLILLLLDGSQELTEEDRRLLELTAGKK--RIIVLNKTD--L 342 Query: 126 AQR-NFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 Q+ EI E++ S EL ++I K+F + N +++ N+R Sbjct: 343 GQKLTAAEIAKESGSEVISTSIMMKENLDELEALIKKLFFKGIENSNDQVLVTNQRQ 399 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 72/123 (58%), Gaps = 5/123 (4%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 L+ A+VGRPNVGKS+L+N L ++ + +G TRD++ + K P+E+ DTAG+ Sbjct: 225 LKTAIVGRPNVGKSSLLNYLTQSDKAIVTDVAGTTRDTLEEFVSVKGVPLELIDTAGIHH 284 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 + +E+ V++S +++ + ++LLD + ++D R+++ G ++ LNK Sbjct: 285 TE---DQVEKIGVERSKKAIAQADLILLLLDGSQELTEEDRRLLE--LTAGKKRIIVLNK 339 Query: 324 WDM 326 D+ Sbjct: 340 TDL 342 >gi|152976731|ref|YP_001376248.1| GTP-binding protein Era [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025483|gb|ABS23253.1| GTP-binding protein Era [Bacillus cytotoxicus NVH 391-98] Length = 301 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 46/151 (30%), Positives = 77/151 (50%), Gaps = 15/151 (9%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 ++I+G PNVGKST NR++ +K+A++ + P TR+++ G N +DT GI K Sbjct: 11 VSIIGRPNVGKSTFLNRIIGQKIAIMSDKPQTTRNKVQGVYTENDAQVIFIDTPGIHKPK 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + M + + E ++LF++++ G + I L++ P+ +V NK+D Sbjct: 71 H-KLGDFMVKMAQTTLKEVDIVLFMVNAAEGFGRGEEYIIEKLKETRQPVFLVINKIDQV 129 Query: 125 IAQ---------RNFYEIYSLDFKEIVEISA 146 + RN YE F EIV ISA Sbjct: 130 HPEKLLELIDQYRNLYE-----FAEIVPISA 155 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 43/162 (26%), Positives = 78/162 (48%), Gaps = 11/162 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 ++++GRPNVGKST +NR++G + + TR+ V + + + DT G+ KP Sbjct: 11 VSIIGRPNVGKSTFLNRIIGQKIAIMSDKPQTTRNKVQGVYTENDAQVIFIDTPGIHKPK 70 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L VK + +++ + + +++A F + + I++ + T V L +NK D Sbjct: 71 H---KLGDFMVKMAQTTLKEVDIVLFMVNAAEGFGRGEEYIIEKLKETRQPVFLVINKID 127 Query: 326 MVSDK--LNLLQDLRTKAIKNLPQIGDIY-INTISGRTGEGL 364 V + L L+ R NL + +I I+ + G E L Sbjct: 128 QVHPEKLLELIDQYR-----NLYEFAEIVPISALEGNNVEAL 164 >gi|322372979|ref|ZP_08047515.1| tRNA modification GTPase TrmE [Streptococcus sp. C150] gi|321278021|gb|EFX55090.1| tRNA modification GTPase TrmE [Streptococcus sp. C150] Length = 456 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 43/140 (30%), Positives = 78/140 (55%), Gaps = 6/140 (4%) Query: 187 ENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISW 246 EN+ + K K + + L A++GRPNVGKS+L+N LL + + G TRD + Sbjct: 207 ENLLATAKRG-KILREGLSTAIIGRPNVGKSSLLNNLLREEKAIVTDIEGTTRDVIEEYV 265 Query: 247 NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRI 306 N K P+++ DTAG+R + E + V++S +++ + +++L+ + P +QD + Sbjct: 266 NIKGVPLKLIDTAGIRDTDDVVEKI---GVERSKKALEEADLVLLVLNNSEPLTEQDRTL 322 Query: 307 VDSVFNTGHAVVLALNKWDM 326 +D N+ ++ LNK D+ Sbjct: 323 LDISQNSNR--IILLNKTDL 340 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 41/117 (35%), Positives = 68/117 (58%), Gaps = 3/117 (2%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L++++ A+V + G TRD + I GV ++DTAGI D + Sbjct: 226 AIIGRPNVGKSSLLNNLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRDTDD 285 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + K ++++ A+ EA L+L ++++ +T D + + N II+ NK D Sbjct: 286 V-VEKIGVERSKKALEEADLVLLVLNNSEPLTEQDRTLLDISQNSN--RIILLNKTD 339 >gi|34763011|ref|ZP_00143987.1| THIOPHENE AND FURAN OXIDATION PROTEIN THDF [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887312|gb|EAA24406.1| THIOPHENE AND FURAN OXIDATION PROTEIN THDF [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 455 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 86/156 (55%), Gaps = 7/156 (4%) Query: 171 PLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLL 230 P +++N K+ ++ ++S K + I ++ A++G+PNVGKS+++N LL +R + Sbjct: 189 PENLVDNLKKASAEIRDLVSSYNKGKI--IKDGIKTAIIGKPNVGKSSILNSLLREDRAI 246 Query: 231 TGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTI 290 G TRD + N P+ + DTAG+R I E++ V+KS + + + + + Sbjct: 247 VTHIPGTTRDIIEEVININGIPLLLIDTAGIRNTDDIVENI---GVEKSKELINSADLIL 303 Query: 291 VLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 ++D + +++D RI D + NT V+ LNK D+ Sbjct: 304 YVIDTSREIDEEDYRIYD-IINT-DKVIGILNKIDI 337 Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 57/180 (31%), Positives = 94/180 (52%), Gaps = 7/180 (3%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS++ N L+++ A+V + PG TRD + ING+ ++DTAGI + + Sbjct: 223 AIIGKPNVGKSSILNSLLREDRAIVTHIPGTTRDIIEEVININGIPLLLIDTAGIRNTDD 282 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 + EL IN A LIL++ID+ I D+ I + +I + NK+D + Sbjct: 283 IVENIGVEKSKEL-INSADLILYVIDTSREIDEEDYRIYDIINTD--KVIGILNKIDIK- 338 Query: 126 AQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK-IFKQKYPNHPLEMIENNKRNEES 184 RN ++ +EISA G L + I+K I K+ + +++ N R++ + Sbjct: 339 --RNTDLSEFPKIEKWIEISALSKTGIDNLENEIYKYIMKENVEDSSQKLVITNVRHKSA 396 >gi|304398619|ref|ZP_07380491.1| GTP-binding protein Era [Pantoea sp. aB] gi|304353830|gb|EFM18205.1| GTP-binding protein Era [Pantoea sp. aB] Length = 301 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 51/177 (28%), Positives = 88/177 (49%), Gaps = 8/177 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N+L+ +K+++ P TR R+ G VDT G+ + Sbjct: 11 VAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGIHTEGEYQAIYVDTPGLHMEE 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN +I + L++F+++ TP D + + LR +P+++ NK+D Sbjct: 71 KRAINRLMNRAASSSIGDVELVIFVVEGTRW-TPDDEMVLNKLRDNKVPVVLAINKVDN- 128 Query: 125 IAQRNF------YEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 I ++ + ++F +IV ISAE + ++ K Q + P + I Sbjct: 129 IQDKSILLPHLQFLSQQMNFLDIVPISAESGKNVDTIAAITRKHLPQADHHFPEDYI 185 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 45/160 (28%), Positives = 79/160 (49%), Gaps = 7/160 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VGRPNVGKSTL+N+LLG +T + TR + + DT G+ Sbjct: 11 VAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGIHTEGEYQAIYVDTPGLHMEE 70 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + ++ + + + S+ E I +++ T + D +++ + + VVLA+NK D Sbjct: 71 K--RAINRLMNRAASSSIGDVELVIFVVEGT-RWTPDDEMVLNKLRDNKVPVVLAINKVD 127 Query: 326 MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLD 365 + DK LL L+ + Q+ + I IS +G+ +D Sbjct: 128 NIQDKSILLPHLQFLS----QQMNFLDIVPISAESGKNVD 163 >gi|254995465|ref|ZP_05277655.1| tRNA modification GTPase TrmE [Anaplasma marginale str. Mississippi] Length = 411 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 49/133 (36%), Positives = 74/133 (55%), Gaps = 8/133 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKSTLFN L ++ MA+V +PG TRD L I G F +VDTAGI + Sbjct: 185 VAILGKPNVGKSTLFNHLARRDMAIVSEYPGTTRDVLEAHVDIGGYPFIVVDTAGIREST 244 Query: 65 NCSIAKQ--MNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM- 121 + + ++ M ++E A + ++LF S+AG AI K I ++ ++ Sbjct: 245 DF-VEREGIMRAKSEAATADIRIMLF-PHSEAGNLGVHEAIEGGDDGKTIYVLSKADSAK 302 Query: 122 --DTRIAQ-RNFY 131 +TRI + + FY Sbjct: 303 EGETRIIEGKQFY 315 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 79/172 (45%), Gaps = 24/172 (13%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 +R+A++G+PNVGKSTL N L + + G TRD + + +P + DTAG+R+ Sbjct: 183 MRVAILGKPNVGKSTLFNHLARRDMAIVSEYPGTTRDVLEAHVDIGGYPFIVVDTAGIRE 242 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVL--------LDATIPFEKQD-------LRIVD 308 T+ +E++ + ++ T + I+L L E D L D Sbjct: 243 S---TDFVEREGIMRAKSEAATADIRIMLFPHSEAGNLGVHEAIEGGDDGKTIYVLSKAD 299 Query: 309 SVFNTGHAVVLALNKWDMVSDKLN-----LLQDLRTKAIKNLPQIGDIYINT 355 S G ++ ++ +VS N LL L+ +AI P+ GD+ I + Sbjct: 300 SA-KEGETRIIEGKQFYLVSVHTNLGVDSLLSALKERAIDGFPKSGDVLITS 350 >gi|242372605|ref|ZP_04818179.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis M23864:W1] gi|242349660|gb|EES41261.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis M23864:W1] Length = 459 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 41/127 (32%), Positives = 72/127 (56%), Gaps = 1/127 (0%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PNVGKS++ N L++ A+V G TRD L + GV +VDTAGI D ++ Sbjct: 226 IVGRPNVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRDTEDI 285 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 + K +++ A++EA LILF++++ +T D + ++ +++ +II ++ R+ Sbjct: 286 -VEKIGVERSRKALSEADLILFVLNNNEPLTEDDQTLYEVIKNEDVIVIINKTDLEQRLD 344 Query: 127 QRNFYEI 133 E+ Sbjct: 345 MNEVKEM 351 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 49/177 (27%), Positives = 91/177 (51%), Gaps = 14/177 (7%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L +VGRPNVGKS+++N L+ N+ + +G TRD + N + P+ + D Sbjct: 216 KIMREGLSTVIVGRPNVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVD 275 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R I E + V++S +++ + + +L+ P + D + + + N V Sbjct: 276 TAGIRDTEDIVEKI---GVERSRKALSEADLILFVLNNNEPLTEDDQTLYEVIKN--EDV 330 Query: 318 VLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEI 374 ++ +NK D L Q L +K + IGD+ + S EG+D+L + + ++ Sbjct: 331 IVIINKTD-------LEQRLDMNEVKEM--IGDMPLIQTSMLKQEGIDELEIQIRDL 378 >gi|169333910|ref|ZP_02861103.1| hypothetical protein ANASTE_00296 [Anaerofustis stercorihominis DSM 17244] gi|169259475|gb|EDS73441.1| hypothetical protein ANASTE_00296 [Anaerofustis stercorihominis DSM 17244] Length = 458 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 55/160 (34%), Positives = 83/160 (51%), Gaps = 9/160 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI--AD 62 +AI+G PNVGKS L N L+ + A+V G TRD + I GV +DTAGI AD Sbjct: 225 VAIIGKPNVGKSQLLNALINENKAIVTEEAGTTRDIVDEVVNIKGVPVKFIDTAGIRNAD 284 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 K + K D++ + E+++ILF ID+ + D I L N +++V NKMD Sbjct: 285 SK---VEKIGIDKSIEMLEESNIILFCIDTSRALDTEDMDIIKML-PDNKEVLVVLNKMD 340 Query: 123 TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKI 162 N + + D + VEISA G ++ + I+++ Sbjct: 341 L---NTNVDTVKAFDNYKTVEISALKKEGIEKIENKIYEL 377 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 41/148 (27%), Positives = 78/148 (52%), Gaps = 6/148 (4%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 +++A++G+PNVGKS L+N L+ N+ + ++G TRD V N K P++ DTAG+R Sbjct: 223 IKVAIIGKPNVGKSQLLNALINENKAIVTEEAGTTRDIVDEVVNIKGVPVKFIDTAGIRN 282 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 +E+ + KS++ + + +D + + +D+ I+ + V++ LNK Sbjct: 283 ADS---KVEKIGIDKSIEMLEESNIILFCIDTSRALDTEDMDII-KMLPDNKEVLVVLNK 338 Query: 324 WDMVS--DKLNLLQDLRTKAIKNLPQIG 349 D+ + D + + +T I L + G Sbjct: 339 MDLNTNVDTVKAFDNYKTVEISALKKEG 366 >gi|148994246|ref|ZP_01823539.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP9-BS68] gi|168488838|ref|ZP_02713037.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP195] gi|147927387|gb|EDK78418.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP9-BS68] gi|183572349|gb|EDT92877.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP195] gi|332073349|gb|EGI83828.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA17570] Length = 457 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 73/120 (60%), Gaps = 5/120 (4%) Query: 207 AVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSR 266 A++GRPNVGKS+L+N LL ++ + +G TRD + N P+++ DTAG+R+ Sbjct: 227 AIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDD 286 Query: 267 ITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 I +EQ V++S ++++ +++L+A+ P QD ++++ +T ++ LNK D+ Sbjct: 287 I---VEQIGVERSKKALKEANLVLLVLNASEPLTAQDRQLLEISQDTNR--IILLNKTDL 341 Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 42/118 (35%), Positives = 71/118 (60%), Gaps = 5/118 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+++ A+V + G TRD + INGV ++DTAGI + + Sbjct: 227 AIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDD 286 Query: 66 CSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 I +Q+ ++++ A+ EA+L+L ++++ +T D + + N II+ NK D Sbjct: 287 --IVEQIGVERSKKALKEANLVLLVLNASEPLTAQDRQLLEISQDTN--RIILLNKTD 340 >gi|34764123|ref|ZP_00144997.1| GTP binding protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27886109|gb|EAA23411.1| GTP binding protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 298 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 41/126 (32%), Positives = 71/126 (56%), Gaps = 5/126 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IAVVGRPNVGKSTLIN+L+ + ++G TRD++ N+K++ DT G+ KP Sbjct: 6 IAVVGRPNVGKSTLINKLVSEKVAIVSDKAGTTRDNIKGILNFKDNQYIFIDTPGIHKPQ 65 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHA--VVLALNK 323 + L + +++ ++ + + L+DA+ P D+ ++D + +L +NK Sbjct: 66 HL---LGEYMTNIAVKILKDVDIILFLIDASKPIGTGDMFVMDRINENAKKKPKILLVNK 122 Query: 324 WDMVSD 329 D++SD Sbjct: 123 VDLISD 128 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 42/120 (35%), Positives = 66/120 (55%), Gaps = 3/120 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTL N+LV +K+A+V + G TRD + G + +DT GI + Sbjct: 6 IAVVGRPNVGKSTLINKLVSEKVAIVSDKAGTTRDNIKGILNFKDNQYIFIDTPGIHKPQ 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRK--KNIPIIIVSNKMD 122 + + + M + + + +ILFLID+ I D + + + K P I++ NK+D Sbjct: 66 HL-LGEYMTNIAVKILKDVDIILFLIDASKPIGTGDMFVMDRINENAKKKPKILLVNKVD 124 >gi|291457893|ref|ZP_06597283.1| tRNA modification GTPase TrmE [Oribacterium sp. oral taxon 078 str. F0262] gi|291419437|gb|EFE93156.1| tRNA modification GTPase TrmE [Oribacterium sp. oral taxon 078 str. F0262] Length = 459 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 51/180 (28%), Positives = 92/180 (51%), Gaps = 15/180 (8%) Query: 195 SSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIE 254 SS + + + +R +VG+PN GKS+L+N LLG R + G TRD++ + K+ + Sbjct: 214 SSGRLLREGIRTVIVGKPNAGKSSLLNALLGEERAIVTEIEGTTRDTLEEELSLKDLNLR 273 Query: 255 IFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTG 314 DTAG+R+ + +E+ V+++ ++ + I ++DA+ P + D I+ F G Sbjct: 274 AIDTAGIRETE---DPVERIGVERAKKAAEDADLIIYVVDASRPLDSSDEEILR--FLPG 328 Query: 315 HAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEI 374 +L LNK D+ + ++ + K P + +IS RT EG+ L + E+ Sbjct: 329 KKALLLLNKSDLRT----IISEEEMKKRSGCP------VLSISARTEEGISMLSEKIREM 378 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 44/157 (28%), Positives = 81/157 (51%), Gaps = 4/157 (2%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PN GKS+L N L+ ++ A+V G TRD L + + + +DTAGI + ++ Sbjct: 227 IVGKPNAGKSSLLNALLGEERAIVTEIEGTTRDTLEEELSLKDLNLRAIDTAGIRETED- 285 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 + + ++ + A +A LI++++D+ + D I FL K +++ + + T I+ Sbjct: 286 PVERIGVERAKKAAEDADLIIYVVDASRPLDSSDEEILRFLPGKKALLLLNKSDLRTIIS 345 Query: 127 QRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 + E+ ++ ISA + G S L I ++F Sbjct: 346 EE---EMKKRSGCPVLSISARTEEGISMLSEKIREMF 379 >gi|148553135|ref|YP_001260717.1| GTP-binding protein Era [Sphingomonas wittichii RW1] gi|148498325|gb|ABQ66579.1| GTP-binding protein Era [Sphingomonas wittichii RW1] Length = 297 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 46/118 (38%), Positives = 64/118 (54%), Gaps = 1/118 (0%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VGAPN GKSTL N LV +K+A+V TR RL G AI +VDT GI + Sbjct: 8 VAVVGAPNAGKSTLVNALVGQKVAIVSPKAQTTRTRLIGVAIAGESQILLVDTPGIFAPR 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + + M +A LI F+ID+K GIT + L ++ P ++V NK+D Sbjct: 68 R-RLDRAMVAAAWGGAQDADLIAFVIDAKTGITHRIGELLDTLAQRREPKLVVLNKVD 124 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 79/165 (47%), Gaps = 14/165 (8%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD---SVSISWNWKNHPIEIFDTAGMR 262 +AVVG PN GKSTL+N L+G + ++ TR V+I+ I + DT G+ Sbjct: 8 VAVVGAPNAGKSTLVNALVGQKVAIVSPKAQTTRTRLIGVAIA---GESQILLVDTPGIF 64 Query: 263 KPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALN 322 P R L++ V + + + ++DA + ++D++ ++ LN Sbjct: 65 APRR---RLDRAMVAAAWGGAQDADLIAFVIDAKTGITHRIGELLDTLAQRREPKLVVLN 121 Query: 323 KWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDL 367 K D+ S K +LL+ A++ ++ I +S TG+G+ DL Sbjct: 122 KVDICS-KESLLE----LAVRLQEKLAPEAIFMVSAATGDGVADL 161 >gi|85059764|ref|YP_455466.1| GTP-binding protein Era [Sodalis glossinidius str. 'morsitans'] gi|84780284|dbj|BAE75061.1| GTP-binding protein [Sodalis glossinidius str. 'morsitans'] Length = 301 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 48/178 (26%), Positives = 84/178 (47%), Gaps = 6/178 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N+ + +K+++ P TR R+ G VDT G+ + Sbjct: 11 VAIVGRPNVGKSTLLNQFLGQKVSITSRKPQTTRHRIMGIHTEGPYQAIYVDTPGLHIEE 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN +I + L++F+++ TP D + + L N P+++ NK+D Sbjct: 71 KRAINRLMNRAASSSICDVELVIFVVEG-THWTPDDEMVVNKLHDVNCPVVLAINKVDNV 129 Query: 125 IAQRNF-----YEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 + + + F IV I AE+ + L ++ K + + P + I + Sbjct: 130 TDKEQLLPHMQFLSQQISFHHIVPICAENGMNVETLAGIVRKALPEAVHHFPEDYITD 187 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 42/134 (31%), Positives = 66/134 (49%), Gaps = 5/134 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMR-KP 264 +A+VGRPNVGKSTL+N+ LG +T + TR + + DT G+ + Sbjct: 11 VAIVGRPNVGKSTLLNQFLGQKVSITSRKPQTTRHRIMGIHTEGPYQAIYVDTPGLHIEE 70 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 R L + S+ V E I +++ T + D +V+ + + VVLA+NK Sbjct: 71 KRAINRLMNRAASSSICDV---ELVIFVVEGT-HWTPDDEMVVNKLHDVNCPVVLAINKV 126 Query: 325 DMVSDKLNLLQDLR 338 D V+DK LL ++ Sbjct: 127 DNVTDKEQLLPHMQ 140 >gi|307299162|ref|ZP_07578963.1| GTP-binding protein Era [Thermotogales bacterium mesG1.Ag.4.2] gi|306914958|gb|EFN45344.1| GTP-binding protein Era [Thermotogales bacterium mesG1.Ag.4.2] Length = 300 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 50/168 (29%), Positives = 88/168 (52%), Gaps = 6/168 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VG+PNVGKSTLIN ++G + + TR+ + K I +DT G+ KP Sbjct: 8 VALVGKPNVGKSTLINTIIGEKIAIVSDKPQTTRNRIGGILTTKKGQIVFYDTPGIHKP- 66 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L Q +K + S+ + +V++D T + D + + V + V LA+NK D Sbjct: 67 --LHRLGQYILKVATSSLAGSDLLLVIVDPTDGLRESDRLVANHVNQSRIPVFLAINKVD 124 Query: 326 MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 ++ LLQD + KA + I ++ IS + G+G+++L+ ++ + Sbjct: 125 EYKNE-RLLQDFQAKAEELFNDIRRTFL--ISAKKGDGVEELLETIFD 169 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 47/180 (26%), Positives = 84/180 (46%), Gaps = 7/180 (3%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+A+VG PNVGKSTL N ++ +K+A+V + P TR+R+ G DT GI Sbjct: 7 TVALVGKPNVGKSTLINTIIGEKIAIVSDKPQTTRNRIGGILTTKKGQIVFYDTPGIHKP 66 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + + + + ++ + L+L ++D G+ D + + + + IP+ + NK+D Sbjct: 67 LH-RLGQYILKVATSSLAGSDLLLVIVDPTDGLRESDRLVANHVNQSRIPVFLAINKVDE 125 Query: 124 RIAQRNFYEIYSL------DFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 +R + + D + ISA+ G EL IF + P ++I + Sbjct: 126 YKNERLLQDFQAKAEELFNDIRRTFLISAKKGDGVEELLETIFDFLPEGKMLFPEDLITD 185 >gi|149006299|ref|ZP_01830011.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP18-BS74] gi|307127434|ref|YP_003879465.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 670-6B] gi|147762076|gb|EDK69038.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP18-BS74] gi|306484496|gb|ADM91365.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae 670-6B] gi|332075631|gb|EGI86099.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA17545] Length = 457 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 73/120 (60%), Gaps = 5/120 (4%) Query: 207 AVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSR 266 A++GRPNVGKS+L+N LL ++ + +G TRD + N P+++ DTAG+R+ Sbjct: 227 AIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDD 286 Query: 267 ITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 I +EQ V++S ++++ +++L+A+ P QD ++++ +T ++ LNK D+ Sbjct: 287 I---VEQIGVERSKKALKEANLVLLVLNASEPLTAQDRQLLEISQDTNR--IILLNKTDL 341 Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 42/118 (35%), Positives = 71/118 (60%), Gaps = 5/118 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+++ A+V + G TRD + INGV ++DTAGI + + Sbjct: 227 AIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDD 286 Query: 66 CSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 I +Q+ ++++ A+ EA+L+L ++++ +T D + + N II+ NK D Sbjct: 287 --IVEQIGVERSKKALKEANLVLLVLNASEPLTAQDRQLLEISQDTN--RIILLNKTD 340 >gi|332529448|ref|ZP_08405407.1| gtp-binding protein era [Hylemonella gracilis ATCC 19624] gi|332041094|gb|EGI77461.1| gtp-binding protein era [Hylemonella gracilis ATCC 19624] Length = 296 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 64/119 (53%), Gaps = 2/119 (1%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N LV +K+++ TR R+ G + F DT G Sbjct: 2 IAIVGKPNVGKSTLLNALVGQKISITSRKAQTTRHRITGIRTVGPTQFVFADTPGFQTRH 61 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 ++ + +N + A+ + L+LF++++ D + L + +P+++++NK+DT Sbjct: 62 GNALNRSLNKTVQGAVGDVDLVLFVVEA-GSFNQADEQVLKLL-AQGVPVLLIANKLDT 118 Score = 40.8 bits (94), Expect = 0.54, Method: Compositional matrix adjust. Identities = 37/138 (26%), Positives = 68/138 (49%), Gaps = 7/138 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA+VG+PNVGKSTL+N L+G +T ++ TR ++ DT G + + Sbjct: 2 IAIVGKPNVGKSTLLNALVGQKISITSRKAQTTRHRITGIRTVGPTQFVFADTPGFQ--T 59 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 R +L + K +V + + +++A F + D +++ + G V+L NK D Sbjct: 60 RHGNALNRSLNKTVQGAVGDVDLVLFVVEAG-SFNQADEQVL-KLLAQGVPVLLIANKLD 117 Query: 326 MVSDKLNL---LQDLRTK 340 + + L LQ+++ + Sbjct: 118 TIKHRAELAPWLQEMQHR 135 >gi|320109421|ref|YP_004185011.1| tRNA modification GTPase TrmE [Terriglobus saanensis SP1PR4] gi|319927942|gb|ADV85017.1| tRNA modification GTPase TrmE [Terriglobus saanensis SP1PR4] Length = 449 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 40/119 (33%), Positives = 73/119 (61%), Gaps = 5/119 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA++G PN GKS+LFN L +++ A+V G TRD + + I G+ ++DTAG+ + + Sbjct: 223 IAVIGRPNAGKSSLFNALAERERAIVTPIAGTTRDVVTERVSIGGIPVELMDTAGLRESE 282 Query: 65 NCSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + +Q+ ++ A+ EA L+LF++D + GI+ + + L + P ++V+NK+D Sbjct: 283 D--FVEQLGIARSREALAEADLVLFIVDLQHGISEEERETIASLEGR--PHLVVANKID 337 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 50/174 (28%), Positives = 84/174 (48%), Gaps = 22/174 (12%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + +RIAV+GRPN GKS+L N L R + +G TRD V+ + P+E+ DTA Sbjct: 217 LREGVRIAVIGRPNAGKSSLFNALAERERAIVTPIAGTTRDVVTERVSIGGIPVELMDTA 276 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R+ + +EQ + +S +++ + + ++D +++ + S+ H VV Sbjct: 277 GLRESE---DFVEQLGIARSREALAEADLVLFIVDLQHGISEEERETIASLEGRPHLVV- 332 Query: 320 ALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 NK D+ LL D + S TGEGLD L ++L+ Sbjct: 333 -ANKIDLAP----LLAS-------------DFALIPTSANTGEGLDRLREALLQ 368 >gi|149019612|ref|ZP_01834931.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP23-BS72] gi|147930987|gb|EDK81967.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae SP23-BS72] gi|301794153|emb|CBW36563.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae INV104] gi|332202879|gb|EGJ16947.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA47901] Length = 457 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 73/120 (60%), Gaps = 5/120 (4%) Query: 207 AVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSR 266 A++GRPNVGKS+L+N LL ++ + +G TRD + N P+++ DTAG+R+ Sbjct: 227 AIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDD 286 Query: 267 ITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 I +EQ V++S ++++ +++L+A+ P QD ++++ +T ++ LNK D+ Sbjct: 287 I---VEQIGVERSKKALKEANLVLLVLNASEPLTAQDRQLLEISQDTNR--IILLNKTDL 341 Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 42/118 (35%), Positives = 71/118 (60%), Gaps = 5/118 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+++ A+V + G TRD + INGV ++DTAGI + + Sbjct: 227 AIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDD 286 Query: 66 CSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 I +Q+ ++++ A+ EA+L+L ++++ +T D + + N II+ NK D Sbjct: 287 --IVEQIGVERSKKALKEANLVLLVLNASEPLTAQDRQLLEISQDTN--RIILLNKTD 340 >gi|237745211|ref|ZP_04575692.1| GTP binding protein [Fusobacterium sp. 7_1] gi|229432440|gb|EEO42652.1| GTP binding protein [Fusobacterium sp. 7_1] Length = 298 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 41/126 (32%), Positives = 71/126 (56%), Gaps = 5/126 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IAVVGRPNVGKSTLIN+L+ + ++G TRD++ N+K++ DT G+ KP Sbjct: 6 IAVVGRPNVGKSTLINKLVSEKVAIVSDKAGTTRDNIKGILNFKDNQYIFIDTPGIHKPQ 65 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHA--VVLALNK 323 + L + +++ ++ + + L+DA+ P D+ ++D + +L +NK Sbjct: 66 HL---LGEYMTNIAVKILKDVDIILFLIDASKPIGTGDIFVMDRINENAKKKPKILLVNK 122 Query: 324 WDMVSD 329 D++SD Sbjct: 123 VDLISD 128 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/120 (35%), Positives = 66/120 (55%), Gaps = 3/120 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTL N+LV +K+A+V + G TRD + G + +DT GI + Sbjct: 6 IAVVGRPNVGKSTLINKLVSEKVAIVSDKAGTTRDNIKGILNFKDNQYIFIDTPGIHKPQ 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRK--KNIPIIIVSNKMD 122 + + + M + + + +ILFLID+ I D + + + K P I++ NK+D Sbjct: 66 HL-LGEYMTNIAVKILKDVDIILFLIDASKPIGTGDIFVMDRINENAKKKPKILLVNKVD 124 >gi|212716036|ref|ZP_03324164.1| hypothetical protein BIFCAT_00948 [Bifidobacterium catenulatum DSM 16992] gi|212661403|gb|EEB21978.1| hypothetical protein BIFCAT_00948 [Bifidobacterium catenulatum DSM 16992] Length = 332 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 62/203 (30%), Positives = 98/203 (48%), Gaps = 24/203 (11%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTL N L+ ++A+ + P TR + G + +VDT GI + Sbjct: 27 VAVVGRPNVGKSTLINALIGTQIAIASSRPETTRKAIRGILTTDNAQIVLVDTPGIHRPR 86 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLR------------KKNI 112 + +++ND + ++ + I FL+ I P D I S LR K + Sbjct: 87 TL-LGQRLNDVVDESLADVDAIAFLLPGDQEIGPGDRRILSRLRSDFAVKRDDGTFKWKV 145 Query: 113 PIIIVSNKMD--TRIAQRN-FYEIYSL-DFKEIVEISA-EHDLGTSELHSVIFKIFKQKY 167 P+I + K+D +R N EI DF +IV +SA +HD +E+ +V+ + + Sbjct: 146 PLIAIVTKIDELSREGLINKLIEINEFADFTDIVPVSALKHD-NLAEVKNVLIENMPEGP 204 Query: 168 PNHPLEMIENNKRNEESPKENIT 190 +P E I EE P+E I Sbjct: 205 QMYPAEQI-----TEERPEETIA 222 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 41/78 (52%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +AVVGRPNVGKSTLIN L+G + S+ TR ++ N I + DT G+ +P Sbjct: 27 VAVVGRPNVGKSTLINALIGTQIAIASSRPETTRKAIRGILTTDNAQIVLVDTPGIHRPR 86 Query: 266 RITESLEQKTVKKSMQSV 283 + V +S+ V Sbjct: 87 TLLGQRLNDVVDESLADV 104 >gi|254000528|ref|YP_003052591.1| tRNA modification GTPase TrmE [Methylovorus sp. SIP3-4] gi|253987207|gb|ACT52064.1| tRNA modification GTPase TrmE [Methylovorus sp. SIP3-4] Length = 446 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 54/158 (34%), Positives = 86/158 (54%), Gaps = 5/158 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + +VG PNVGKS+L N+L +++A+V G TRD + I GV +++DTAG+ + + Sbjct: 218 VVLVGQPNVGKSSLMNQLAGEEVAIVTPIAGTTRDTIKNVVQIEGVPLHLIDTAGLRETE 277 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + KQ +T A+ A+ L L+D+ GIT + +I L N+P I V NK+D Sbjct: 278 D-EVEKQGIARTWRALENANAALLLVDAAHGITETEKSILERL-PANLPKIWVHNKIDLH 335 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKI 162 Q E + + + ISA+ LG L + + KI Sbjct: 336 SEQPRQRE---HEGELHLYISAKLGLGLDALKAHLLKI 370 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/177 (25%), Positives = 93/177 (52%), Gaps = 19/177 (10%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 +++ +VG+PNVGKS+L+N+L G + +G TRD++ + P+ + DTAG+R+ Sbjct: 216 IQVVLVGQPNVGKSSLMNQLAGEEVAIVTPIAGTTRDTIKNVVQIEGVPLHLIDTAGLRE 275 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 + +E++ + ++ +++ ++L+DA + + I++ + L K Sbjct: 276 ---TEDEVEKQGIARTWRALENANAALLLVDAAHGITETEKSILERLPAN-------LPK 325 Query: 324 -WDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWK 379 W V +K+ DL ++ + G++++ IS + G GLD L +L+I W+ Sbjct: 326 IW--VHNKI----DLHSEQPRQREHEGELHL-YISAKLGLGLDALKAHLLKIAG-WQ 374 >gi|169832185|ref|YP_001718167.1| GTP-binding protein Era [Candidatus Desulforudis audaxviator MP104C] gi|169639029|gb|ACA60535.1| GTP-binding protein Era [Candidatus Desulforudis audaxviator MP104C] Length = 308 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 49/146 (33%), Positives = 72/146 (49%), Gaps = 5/146 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + I+G PNVGKSTL N LV +K+A++ + P TR R+ + VDT GI K Sbjct: 19 VTIIGRPNVGKSTLLNSLVGRKVAIISDKPQTTRHRIRAVLTRDDAQVVFVDTPGIHKPK 78 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + + M D + + LILFLI++ P D I L P+ +V NK+D Sbjct: 79 H-RLGRMMVDTALKTLQDVDLILFLIEAHRESGPGDDFILERLAGIRTPVFLVINKIDLV 137 Query: 125 IAQRNFYEI----YSLDFKEIVEISA 146 R I + F+EI+ +SA Sbjct: 138 AKPRLLPLIDEMRKKMAFREIIPLSA 163 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/173 (27%), Positives = 82/173 (47%), Gaps = 17/173 (9%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 + ++GRPNVGKSTL+N L+G + + TR + + + DT G+ KP Sbjct: 19 VTIIGRPNVGKSTLLNSLVGRKVAIISDKPQTTRHRIRAVLTRDDAQVVFVDTPGIHKPK 78 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + V ++++++ + + L++A D I++ + V L +NK D Sbjct: 79 ---HRLGRMMVDTALKTLQDVDLILFLIEAHRESGPGDDFILERLAGIRTPVFLVINKID 135 Query: 326 MVSDK--LNLLQDLRTK-AIKNLPQIGDIYINTISGRTGEG---LDDLMVSVL 372 +V+ L L+ ++R K A + I +S RTGE L DL++ L Sbjct: 136 LVAKPRLLPLIDEMRKKMAFRE--------IIPLSARTGENTGLLVDLVIGCL 180 >gi|148545139|ref|YP_001272509.1| tRNA modification GTPase TrmE [Lactobacillus reuteri DSM 20016] gi|184154471|ref|YP_001842812.1| tRNA modification GTPase TrmE [Lactobacillus reuteri JCM 1112] gi|148532173|gb|ABQ84172.1| tRNA modification GTPase trmE [Lactobacillus reuteri DSM 20016] gi|183225815|dbj|BAG26332.1| thiophene and furan oxidation protein ThdF [Lactobacillus reuteri JCM 1112] Length = 462 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 46/117 (39%), Positives = 65/117 (55%), Gaps = 3/117 (2%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+ + A+V N G TRD + +NGV ++DTAGI D N Sbjct: 227 AIIGQPNVGKSSLLNSLLHEDKAIVTNVAGTTRDVIEEYVNVNGVPLKLIDTAGIRD-TN 285 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + K +++ A+ A L+L LIDS +T D + + K II+ NK D Sbjct: 286 DQVEKIGVERSRKALGAADLVLLLIDSSNKLTDEDRQLLEATKDKQ--RIIILNKTD 340 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 35/129 (27%), Positives = 76/129 (58%), Gaps = 5/129 (3%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + L A++G+PNVGKS+L+N LL ++ + + +G TRD + N P+++ D Sbjct: 218 KVLRDGLATAIIGQPNVGKSSLLNSLLHEDKAIVTNVAGTTRDVIEEYVNVNGVPLKLID 277 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R + + +E+ V++S +++ + ++L+D++ +D +++++ + + Sbjct: 278 TAGIRDTN---DQVEKIGVERSRKALGAADLVLLLIDSSNKLTDEDRQLLEATKDKQRII 334 Query: 318 VLALNKWDM 326 + LNK D+ Sbjct: 335 I--LNKTDL 341 >gi|313202487|ref|YP_004041145.1| tRNA modification GTPase TrmE [Methylovorus sp. MP688] gi|312441803|gb|ADQ85909.1| tRNA modification GTPase TrmE [Methylovorus sp. MP688] Length = 446 Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 54/158 (34%), Positives = 86/158 (54%), Gaps = 5/158 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + +VG PNVGKS+L N+L +++A+V G TRD + I GV +++DTAG+ + + Sbjct: 218 VVLVGQPNVGKSSLMNQLAGEEVAIVTPIAGTTRDTIKNVVQIEGVPLHLIDTAGLRETE 277 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + KQ +T A+ A+ L L+D+ GIT + +I L N+P I V NK+D Sbjct: 278 D-EVEKQGIARTWRALENANAALLLVDAAHGITETEKSILERL-PANLPKIWVHNKIDLH 335 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKI 162 Q E + + + ISA+ LG L + + KI Sbjct: 336 SEQPRQRE---HEGELHLYISAKLGLGLDALKAHLLKI 370 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 52/220 (23%), Positives = 110/220 (50%), Gaps = 27/220 (12%) Query: 167 YPNHPLEMIENNKRNEESPKENITS------EGKSSVKNISKPLRIAVVGRPNVGKSTLI 220 +P+ ++ I + E+ +NIT +G + + +++ +VG+PNVGKS+L+ Sbjct: 175 FPDEDIDFISQGRVAEK--LQNITDALELVFKGARQGNLLREGIQVVLVGQPNVGKSSLM 232 Query: 221 NRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSM 280 N+L G + +G TRD++ + P+ + DTAG+R+ + +E++ + ++ Sbjct: 233 NQLAGEEVAIVTPIAGTTRDTIKNVVQIEGVPLHLIDTAGLRE---TEDEVEKQGIARTW 289 Query: 281 QSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK-WDMVSDKLNLLQDLRT 339 +++ ++L+DA + + I++ + L K W V +K+ DL + Sbjct: 290 RALENANAALLLVDAAHGITETEKSILERLPAN-------LPKIW--VHNKI----DLHS 336 Query: 340 KAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWK 379 + + G++++ IS + G GLD L +L+I W+ Sbjct: 337 EQPRQREHEGELHL-YISAKLGLGLDALKAHLLKIAG-WQ 374 >gi|167563526|ref|ZP_02356442.1| GTP-binding protein Era [Burkholderia oklahomensis EO147] gi|167570686|ref|ZP_02363560.1| GTP-binding protein Era [Burkholderia oklahomensis C6786] Length = 299 Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 47/150 (31%), Positives = 80/150 (53%), Gaps = 9/150 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N LV +K+++ TR R+ G ++ + VDT G Sbjct: 14 IAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRITGIRTVDDAQYIFVDTPGFQTRH 73 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + ++ + +N + ILF+I++ P D + + P ++V+NK+D R Sbjct: 74 STALNRSLNRAVTSTLTSIDAILFVIEA-GRFGPDDQKVLDLI-PPGTPTLLVANKLD-R 130 Query: 125 IAQRN-----FYEIYSL-DFKEIVEISAEH 148 ++ ++ F ++ +L +F EIV +SA+H Sbjct: 131 VSDKDTLYPFFQKMGALREFAEIVPLSAKH 160 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 40/128 (31%), Positives = 66/128 (51%), Gaps = 4/128 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA+VGRPNVGKSTL+N L+G +T ++ TR ++ + DT G + + Sbjct: 14 IAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRITGIRTVDDAQYIFVDTPGFQ--T 71 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 R + +L +++ +++ S T I+ + F D +++D + G +L NK D Sbjct: 72 RHSTAL-NRSLNRAVTSTLTSIDAILFVIEAGRFGPDDQKVLD-LIPPGTPTLLVANKLD 129 Query: 326 MVSDKLNL 333 VSDK L Sbjct: 130 RVSDKDTL 137 >gi|146297756|ref|YP_001181527.1| tRNA modification GTPase TrmE [Caldicellulosiruptor saccharolyticus DSM 8903] gi|166200470|sp|A4XN51|MNME_CALS8 RecName: Full=tRNA modification GTPase mnmE gi|145411332|gb|ABP68336.1| tRNA modification GTPase trmE [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 455 Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 50/124 (40%), Positives = 76/124 (61%), Gaps = 5/124 (4%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 IYT+ IVG PNVGKS+L NRL+K++ ++V + PG TRD + I G+ +VDTAG+ Sbjct: 221 IYTV-IVGRPNVGKSSLLNRLLKEERSIVTDIPGTTRDVIEEVLDIEGIPIILVDTAGVR 279 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 ++ + + ++T ++ A L++F+I+S GIT D I S + KN II+ NK Sbjct: 280 QTEDI-VERIGVERTLKSVERADLVIFMIESD-GITKEDIEIFSSI--KNKKYIILVNKT 335 Query: 122 DTRI 125 D I Sbjct: 336 DKGI 339 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 43/129 (33%), Positives = 73/129 (56%), Gaps = 9/129 (6%) Query: 208 VVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRI 267 +VGRPNVGKS+L+NRLL R + G TRD + + + PI + DTAG+R+ I Sbjct: 225 IVGRPNVGKSSLLNRLLKEERSIVTDIPGTTRDVIEEVLDIEGIPIILVDTAGVRQTEDI 284 Query: 268 TESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMV 327 E + V+++++SV + I ++++ K+D+ I S+ N + ++ +NK D Sbjct: 285 VERI---GVERTLKSVERADLVIFMIESD-GITKEDIEIFSSIKNKKY--IILVNKTD-- 336 Query: 328 SDKLNLLQD 336 +N+ QD Sbjct: 337 -KGINISQD 344 >gi|227364302|ref|ZP_03848395.1| tRNA modification GTPase TrmE [Lactobacillus reuteri MM2-3] gi|325683501|ref|ZP_08163017.1| tRNA modification GTPase TrmE [Lactobacillus reuteri MM4-1A] gi|227070615|gb|EEI08945.1| tRNA modification GTPase TrmE [Lactobacillus reuteri MM2-3] gi|324977851|gb|EGC14802.1| tRNA modification GTPase TrmE [Lactobacillus reuteri MM4-1A] Length = 477 Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 46/117 (39%), Positives = 65/117 (55%), Gaps = 3/117 (2%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+ + A+V N G TRD + +NGV ++DTAGI D N Sbjct: 242 AIIGQPNVGKSSLLNSLLHEDKAIVTNVAGTTRDVIEEYVNVNGVPLKLIDTAGIRD-TN 300 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + K +++ A+ A L+L LIDS +T D + + K II+ NK D Sbjct: 301 DQVEKIGVERSRKALGAADLVLLLIDSSNKLTDEDRQLLEATKDKQ--RIIILNKTD 355 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 35/129 (27%), Positives = 76/129 (58%), Gaps = 5/129 (3%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + L A++G+PNVGKS+L+N LL ++ + + +G TRD + N P+++ D Sbjct: 233 KVLRDGLATAIIGQPNVGKSSLLNSLLHEDKAIVTNVAGTTRDVIEEYVNVNGVPLKLID 292 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R + + +E+ V++S +++ + ++L+D++ +D +++++ + + Sbjct: 293 TAGIRDTN---DQVEKIGVERSRKALGAADLVLLLIDSSNKLTDEDRQLLEATKDKQRII 349 Query: 318 VLALNKWDM 326 + LNK D+ Sbjct: 350 I--LNKTDL 356 >gi|161612650|ref|YP_001586615.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|189037666|sp|A9N1T2|ERA_SALPB RecName: Full=GTPase Era gi|161362014|gb|ABX65782.1| hypothetical protein SPAB_00346 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 301 Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 53/185 (28%), Positives = 90/185 (48%), Gaps = 20/185 (10%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYG-------QAIINGVIFNIVDT 57 IAIVG PNVGKSTL N+L+ +K+++ TR R+ G QAI VDT Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGPYQAI-------YVDT 63 Query: 58 AGIADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIV 117 G+ + +I + MN +I + L++F+++ TP D + + LR P+I+ Sbjct: 64 PGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLRDGKAPVILA 122 Query: 118 SNKMDTRIAQRNF-----YEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPL 172 NK+D + + + ++F +IV ISAE + + ++ K + + P Sbjct: 123 VNKVDNVQEKADLLPHLQFLANQMNFLDIVPISAETGMNVDTIAGIVRKHLPEAIHHFPE 182 Query: 173 EMIEN 177 + I + Sbjct: 183 DYITD 187 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 51/161 (31%), Positives = 82/161 (50%), Gaps = 9/161 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS-VSISWNWKNHPIEIFDTAGMRKP 264 IA+VGRPNVGKSTL+N+LLG +T ++ TR V I I + DT G+ Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGPYQAIYV-DTPGLHME 69 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 + ++ + K + S+ E I +++ T + D +++ + + V+LA+NK Sbjct: 70 EK--RAINRLMNKAASSSIGDVELVIFVVEGT-RWTPDDEMVLNKLRDGKAPVILAVNKV 126 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLD 365 D V +K +LL L+ A Q+ + I IS TG +D Sbjct: 127 DNVQEKADLLPHLQFLA----NQMNFLDIVPISAETGMNVD 163 >gi|312867712|ref|ZP_07727918.1| tRNA modification GTPase TrmE [Streptococcus parasanguinis F0405] gi|311096775|gb|EFQ55013.1| tRNA modification GTPase TrmE [Streptococcus parasanguinis F0405] Length = 457 Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 45/154 (29%), Positives = 85/154 (55%), Gaps = 6/154 (3%) Query: 173 EMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTG 232 E+I R E+ N+ + K + + + A++GRPNVGKS+L+N LL + + Sbjct: 194 EIIREKTREFEALLTNLLKTARRG-KILREGISTAIIGRPNVGKSSLLNNLLREEKAIVT 252 Query: 233 SQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVL 292 G TRD + N P+++ DTAG+R+ I LEQ V++S ++++ + +++ Sbjct: 253 DIEGTTRDVIEEYVNINGVPLKLVDTAGIRETEDI---LEQIGVERSKKALKEADLVLLV 309 Query: 293 LDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 L+A+ P QD ++++ ++ ++ LNK D+ Sbjct: 310 LNASEPLTDQDRQLLEISQDSNR--IILLNKVDL 341 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 43/118 (36%), Positives = 73/118 (61%), Gaps = 5/118 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L++++ A+V + G TRD + INGV +VDTAGI + ++ Sbjct: 227 AIIGRPNVGKSSLLNNLLREEKAIVTDIEGTTRDVIEEYVNINGVPLKLVDTAGIRETED 286 Query: 66 CSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 I +Q+ ++++ A+ EA L+L ++++ +T D + + N II+ NK+D Sbjct: 287 --ILEQIGVERSKKALKEADLVLLVLNASEPLTDQDRQLLEISQDSN--RIILLNKVD 340 >gi|326202766|ref|ZP_08192633.1| tRNA modification GTPase TrmE [Clostridium papyrosolvens DSM 2782] gi|325986843|gb|EGD47672.1| tRNA modification GTPase TrmE [Clostridium papyrosolvens DSM 2782] Length = 460 Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 56/170 (32%), Positives = 88/170 (51%), Gaps = 14/170 (8%) Query: 167 YPNHPLEMIENNKRNEESPKENITSEGKSSV------KNISKPLRIAVVGRPNVGKSTLI 220 YP H +E I K E +NI E + K + + L I + G+PNVGKS+L+ Sbjct: 181 YPEHDIEEITGEKVLENL--KNIKGELHTLAGTFERGKILREGLNIVIAGKPNVGKSSLL 238 Query: 221 NRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSM 280 N+L G + + G TRD + N P +I DTAG+R + E + V K+ Sbjct: 239 NQLSGNTKAIVTDIPGTTRDIIEEYVNINGIPAKITDTAGIRNTQDVVEKI---GVNKAY 295 Query: 281 QSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDK 330 ++V + TIV+L A + +D+ I++ V N A++L +NK D+ +DK Sbjct: 296 EAVGQADLTIVVLSAETGIDDEDIEILNLVKNK-KALIL-INKTDL-ADK 342 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 57/190 (30%), Positives = 91/190 (47%), Gaps = 28/190 (14%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 I I G PNVGKS+L N+L A+V + PG TRD + ING+ I DTAGI + + Sbjct: 224 IVIAGKPNVGKSSLLNQLSGNTKAIVTDIPGTTRDIIEEYVNINGIPAKITDTAGIRNTQ 283 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +N E A+ +A L + ++ ++ GI D I + ++ K I+I NK D Sbjct: 284 DVVEKIGVNKAYE-AVGQADLTIVVLSAETGIDDEDIEILNLVKNKKALILI--NKTDLA 340 Query: 125 IAQRNFYEIYSLDFKEIVEISAE---HDL----------GTSELHSVIFKIFKQKYPNHP 171 D +++ EI A+ HD+ G EL + I ++F + + Sbjct: 341 ------------DKEQVNEIKAQLENHDIILKASVINARGIEELEATISELFVKGKISGN 388 Query: 172 LEMIENNKRN 181 E++ N R+ Sbjct: 389 DEVLLTNSRH 398 >gi|257899265|ref|ZP_05678918.1| tRNA modification GTPase mnmE [Enterococcus faecium Com15] gi|257837177|gb|EEV62251.1| tRNA modification GTPase mnmE [Enterococcus faecium Com15] Length = 465 Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 49/170 (28%), Positives = 94/170 (55%), Gaps = 14/170 (8%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L A++GRPNVGKS+L+N LL + + +G TRD + N + P+++ D Sbjct: 222 KVLREGLSTAIIGRPNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLID 281 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ + E + V++S +++ + +++L+ + P +D +++++ +G Sbjct: 282 TAGIRETEDVVERI---GVERSRKALAEADLILLVLNQSEPLTAEDEQLLEA--TSGLKR 336 Query: 318 VLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDL 367 ++ LNK D+ + L Q+ K I+N P + +IS +GLD L Sbjct: 337 IILLNKTDLPA---QLEQEKLNKWIENEP------VFSISVAKNDGLDRL 377 Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 41/122 (33%), Positives = 71/122 (58%), Gaps = 9/122 (7%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 + AI+G PNVGKS+L N L++++ A+V + G TRD + + GV ++DTAGI + Sbjct: 229 STAIIGRPNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRET 288 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAI---TSFLRKKNIPIIIVSNK 120 ++ + + +++ A+ EA LIL +++ +T D + TS L++ II+ NK Sbjct: 289 EDV-VERIGVERSRKALAEADLILLVLNQSEPLTAEDEQLLEATSGLKR-----IILLNK 342 Query: 121 MD 122 D Sbjct: 343 TD 344 >gi|227878343|ref|ZP_03996300.1| tRNA modification GTP-binding protein TrmE [Lactobacillus crispatus JV-V01] gi|256843835|ref|ZP_05549322.1| tRNA modification GTPase TrmE [Lactobacillus crispatus 125-2-CHN] gi|256849610|ref|ZP_05555042.1| thiophene and furan oxidation protein [Lactobacillus crispatus MV-1A-US] gi|262046278|ref|ZP_06019241.1| tRNA modification GTPase TrmE [Lactobacillus crispatus MV-3A-US] gi|312984011|ref|ZP_07791359.1| tRNA modification GTPase TrmE [Lactobacillus crispatus CTV-05] gi|227862079|gb|EEJ69641.1| tRNA modification GTP-binding protein TrmE [Lactobacillus crispatus JV-V01] gi|256613740|gb|EEU18942.1| tRNA modification GTPase TrmE [Lactobacillus crispatus 125-2-CHN] gi|256713726|gb|EEU28715.1| thiophene and furan oxidation protein [Lactobacillus crispatus MV-1A-US] gi|260573608|gb|EEX30165.1| tRNA modification GTPase TrmE [Lactobacillus crispatus MV-3A-US] gi|310894513|gb|EFQ43587.1| tRNA modification GTPase TrmE [Lactobacillus crispatus CTV-05] Length = 461 Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 54/177 (30%), Positives = 89/177 (50%), Gaps = 6/177 (3%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AIVG PNVGKS+L N L + A+V + G TRD L + GV ++DTAGI ++ Sbjct: 228 AIVGRPNVGKSSLLNYLTQSDKAIVTDVAGTTRDTLEEYVSVKGVPLELIDTAGIHHTED 287 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 + K ++++ A+ A L+L LID+ +T D A+ + K I++ NK D + Sbjct: 288 -KVEKIGVERSKKALERADLVLLLIDASQALTAEDQALIEATKDKK--RIVILNKSD--L 342 Query: 126 AQR-NFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 Q+ E+ L +++ S + L +I K+F N +++ N+R Sbjct: 343 GQKITTTEMEKLTGSDVISTSILKEQNLDALEELINKLFFAGIENSNDQIMVTNQRQ 399 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 71/123 (57%), Gaps = 5/123 (4%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 L A+VGRPNVGKS+L+N L ++ + +G TRD++ + K P+E+ DTAG+ Sbjct: 225 LATAIVGRPNVGKSSLLNYLTQSDKAIVTDVAGTTRDTLEEYVSVKGVPLELIDTAGIHH 284 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 + +E+ V++S +++ + ++L+DA+ +D ++++ + V+ LNK Sbjct: 285 TE---DKVEKIGVERSKKALERADLVLLLIDASQALTAEDQALIEATKDKKRIVI--LNK 339 Query: 324 WDM 326 D+ Sbjct: 340 SDL 342 >gi|187931573|ref|YP_001891557.1| GTP-binding protein Era [Francisella tularensis subsp. mediasiatica FSC147] gi|187712482|gb|ACD30779.1| GTP-binding protein Era [Francisella tularensis subsp. mediasiatica FSC147] Length = 297 Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 52/163 (31%), Positives = 82/163 (50%), Gaps = 5/163 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 I+I+G PNVGKSTL N ++K K+++ P TR ++ G + F VDT GI + Sbjct: 7 ISIIGRPNVGKSTLLNNILKYKVSITSRKPQTTRHQITGIKTLGDTQFIYVDTPGIHIKE 66 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I K MN + +ILF+++ T + I L+ IPI +V NK+D + Sbjct: 67 PKAINKFMNKAATTMFKDIDVILFVVEM-GKWTELEDNIVEKLKHSEIPIFLVVNKVDKK 125 Query: 125 IAQRNFYEIYS----LDFKEIVEISAEHDLGTSELHSVIFKIF 163 + I S L F +++ +SA+ +EL S I K+ Sbjct: 126 KSLEAAMFIESIKEKLSFYDVIYVSAKQGHNINELESRIEKLL 168 Score = 39.7 bits (91), Expect = 0.94, Method: Compositional matrix adjust. Identities = 17/38 (44%), Positives = 26/38 (68%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 I+++GRPNVGKSTL+N +L Y +T + TR ++ Sbjct: 7 ISIIGRPNVGKSTLLNNILKYKVSITSRKPQTTRHQIT 44 >gi|329724170|gb|EGG60688.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis VCU144] Length = 459 Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 41/127 (32%), Positives = 72/127 (56%), Gaps = 1/127 (0%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PNVGKS++ N L++ A+V G TRD L + GV +VDTAGI D ++ Sbjct: 226 IVGRPNVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRDTEDI 285 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 + K +++ A++EA LILF++++ +T D + ++ +++ +II ++ R+ Sbjct: 286 -VEKIGVERSRKALSEADLILFVLNNNEPLTEDDQTLFEVIKNEDVIVIINKTDLEQRLD 344 Query: 127 QRNFYEI 133 E+ Sbjct: 345 VSELREM 351 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 51/198 (25%), Positives = 101/198 (51%), Gaps = 16/198 (8%) Query: 174 MIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGS 233 ++E +KR +E + + + + + + + L +VGRPNVGKS+++N L+ N+ + Sbjct: 194 LLEQSKRIKEEINQLLETGAQGKI--MREGLSTVIVGRPNVGKSSMLNNLIQDNKAIVTE 251 Query: 234 QSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLL 293 +G TRD + N + P+ + DTAG+R I E + V++S +++ + + +L Sbjct: 252 VAGTTRDVLEEYVNVRGVPLRLVDTAGIRDTEDIVEKI---GVERSRKALSEADLILFVL 308 Query: 294 DATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYI 353 + P + D + + + N V++ +NK D L Q L ++ + IGD+ + Sbjct: 309 NNNEPLTEDDQTLFEVIKN--EDVIVIINKTD-------LEQRLDVSELREM--IGDMPL 357 Query: 354 NTISGRTGEGLDDLMVSV 371 S EG+D+L + + Sbjct: 358 IQTSMLKQEGIDELEIQI 375 >gi|309801224|ref|ZP_07695353.1| ribosome biogenesis GTPase Era [Bifidobacterium dentium JCVIHMP022] gi|308222113|gb|EFO78396.1| ribosome biogenesis GTPase Era [Bifidobacterium dentium JCVIHMP022] Length = 327 Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 62/203 (30%), Positives = 98/203 (48%), Gaps = 24/203 (11%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTL N L+ ++A+ + P TR + G + +VDT GI + Sbjct: 22 VAVVGRPNVGKSTLINALIGTQIAIASSRPETTRKAIRGILTTDNAQIVLVDTPGIHRPR 81 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLR------------KKNI 112 + +++ND + ++ + I FL+ I P D I S LR K + Sbjct: 82 TL-LGQRLNDVVDESLADVDAIAFLLPGDQEIGPGDKRILSRLRSEFAAKRDDGTFKWKV 140 Query: 113 PIIIVSNKMD--TRIAQRN-FYEIYSL-DFKEIVEISA-EHDLGTSELHSVIFKIFKQKY 167 P+I + K+D +R N EI DF +IV +SA +HD SE+ +V+ + + Sbjct: 141 PLIAIVTKIDELSREGLINKLIEINEFADFTDIVPVSALKHD-NLSEVRNVLVENMPEGP 199 Query: 168 PNHPLEMIENNKRNEESPKENIT 190 +P E I EE P++ I Sbjct: 200 QMYPAEQI-----TEERPEDTIA 217 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 41/78 (52%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +AVVGRPNVGKSTLIN L+G + S+ TR ++ N I + DT G+ +P Sbjct: 22 VAVVGRPNVGKSTLINALIGTQIAIASSRPETTRKAIRGILTTDNAQIVLVDTPGIHRPR 81 Query: 266 RITESLEQKTVKKSMQSV 283 + V +S+ V Sbjct: 82 TLLGQRLNDVVDESLADV 99 >gi|251811361|ref|ZP_04825834.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis BCM-HMP0060] gi|282874718|ref|ZP_06283597.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis SK135] gi|251805110|gb|EES57767.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis BCM-HMP0060] gi|281296434|gb|EFA88949.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis SK135] Length = 459 Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 41/127 (32%), Positives = 72/127 (56%), Gaps = 1/127 (0%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PNVGKS++ N L++ A+V G TRD L + GV +VDTAGI D ++ Sbjct: 226 IVGRPNVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRDTEDI 285 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 + K +++ A++EA LILF++++ +T D + ++ +++ +II ++ R+ Sbjct: 286 -VEKIGVERSRKALSEADLILFVLNNNEPLTEDDQTLFEVIKNEDVIVIINKTDLEQRLD 344 Query: 127 QRNFYEI 133 E+ Sbjct: 345 VSELREM 351 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 51/198 (25%), Positives = 101/198 (51%), Gaps = 16/198 (8%) Query: 174 MIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGS 233 ++E +KR +E + + + + + + + L +VGRPNVGKS+++N L+ N+ + Sbjct: 194 LLEQSKRIKEEINQLLETGAQGKI--MREGLSTVIVGRPNVGKSSMLNNLIQDNKAIVTE 251 Query: 234 QSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLL 293 +G TRD + N + P+ + DTAG+R I E + V++S +++ + + +L Sbjct: 252 VAGTTRDVLEEYVNVRGVPLRLVDTAGIRDTEDIVEKI---GVERSRKALSEADLILFVL 308 Query: 294 DATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYI 353 + P + D + + + N V++ +NK D L Q L ++ + IGD+ + Sbjct: 309 NNNEPLTEDDQTLFEVIKN--EDVIVIINKTD-------LEQRLDVSELREM--IGDMPL 357 Query: 354 NTISGRTGEGLDDLMVSV 371 S EG+D+L + + Sbjct: 358 IQTSMLKQEGIDELEIQI 375 >gi|116491019|ref|YP_810563.1| GTPase [Oenococcus oeni PSU-1] gi|290890500|ref|ZP_06553575.1| hypothetical protein AWRIB429_0965 [Oenococcus oeni AWRIB429] gi|116091744|gb|ABJ56898.1| GTPase [Oenococcus oeni PSU-1] gi|290479896|gb|EFD88545.1| hypothetical protein AWRIB429_0965 [Oenococcus oeni AWRIB429] Length = 305 Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 51/151 (33%), Positives = 83/151 (54%), Gaps = 10/151 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKSTL N ++ +K+A++ + TR+++ G +DT GI Sbjct: 10 VAIIGRPNVGKSTLLNYIIGQKVAIISSKAQTTRNKIAGIYTTEEAQVVFLDTPGIHKPY 69 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRK-KNIPIIIVSNKMDT 123 N S+ + M + A+NEA + F++D+ D+ I L+K KN PI ++ NK+D Sbjct: 70 N-SLDEYMEKASFGALNEADAVWFVVDATEKRGGGDNFIIERLKKIKNTPIYLLVNKIDL 128 Query: 124 RIAQRN-------FYEIYSLDFKEIVEISAE 147 I ++N Y + SLD+ E+ ISA+ Sbjct: 129 -IKKKNDLFQAISSYTVDSLDWSEVYPISAK 158 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 90/169 (53%), Gaps = 7/169 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKSTL+N ++G + S++ TR+ ++ + + + DT G+ KP Sbjct: 10 VAIIGRPNVGKSTLLNYIIGQKVAIISSKAQTTRNKIAGIYTTEEAQVVFLDTPGIHKPY 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHA-VVLALNKW 324 SL++ K S ++ + ++DAT D I++ + + + L +NK Sbjct: 70 N---SLDEYMEKASFGALNEADAVWFVVDATEKRGGGDNFIIERLKKIKNTPIYLLVNKI 126 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 D++ K +L Q + + + +L ++Y IS ++GE ++ L+ V+E Sbjct: 127 DLIKKKNDLFQAISSYTVDSL-DWSEVY--PISAKSGEQVNALVDDVIE 172 >gi|81429490|ref|YP_396491.1| tRNA modification GTPase TrmE [Lactobacillus sakei subsp. sakei 23K] gi|123563597|sp|Q38UE9|MNME_LACSS RecName: Full=tRNA modification GTPase mnmE gi|78611133|emb|CAI56186.1| tRNA modification GTPase trmE [Lactobacillus sakei subsp. sakei 23K] Length = 462 Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 60/178 (33%), Positives = 92/178 (51%), Gaps = 7/178 (3%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AIVG PNVGKS+L N L+ + A+V + G TRD L + GV +VDTAGI D ++ Sbjct: 228 AIVGRPNVGKSSLLNHLLHEDKAIVTDVAGTTRDVLEEYVNVRGVPLKLVDTAGIHDTED 287 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHA-ITSFLRKKNIPIIIVSNKMDTR 124 + K +++ AI +A LIL +++ +T D IT+ KK II+ NK D Sbjct: 288 -KVEKIGVERSRAAITKADLILLVLNQSEPLTIEDRELITATTDKKR---IIILNKTDLP 343 Query: 125 IAQRNFYEIYSL-DFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 Q + E+ +L E+++ S G ++L + I K+F N ++ N R Sbjct: 344 -NQLDLDELQTLVRADEVIQTSILTSEGVTDLEAQIAKLFFGGIENSQSTVMITNARQ 400 Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 37/129 (28%), Positives = 72/129 (55%), Gaps = 5/129 (3%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L A+VGRPNVGKS+L+N LL ++ + +G TRD + N + P+++ D Sbjct: 219 KVLREGLATAIVGRPNVGKSSLLNHLLHEDKAIVTDVAGTTRDVLEEYVNVRGVPLKLVD 278 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+ + +E+ V++S ++ + +++L+ + P +D ++ + T Sbjct: 279 TAGIHDTE---DKVEKIGVERSRAAITKADLILLVLNQSEPLTIEDRELITA--TTDKKR 333 Query: 318 VLALNKWDM 326 ++ LNK D+ Sbjct: 334 IIILNKTDL 342 >gi|56965874|ref|YP_177608.1| tRNA modification GTPase TrmE [Bacillus clausii KSM-K16] gi|81821939|sp|Q5WAG3|MNME_BACSK RecName: Full=tRNA modification GTPase mnmE gi|56912120|dbj|BAD66648.1| tRNA modification GTPase [Bacillus clausii KSM-K16] Length = 458 Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 49/160 (30%), Positives = 86/160 (53%), Gaps = 7/160 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N LV + A+V + PG TRD L + GV ++DTAGI + ++ Sbjct: 224 AIIGRPNVGKSSLMNSLVHEAKAIVTDIPGTTRDTLEEYVNVRGVPLRLIDTAGIRETED 283 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT-- 123 + + +++ A+ EA LIL +++ ++ D A+ F K + ++++ NK+D Sbjct: 284 I-VERIGVERSRQALKEADLILLVLNYAEKLSKEDEAL--FEAVKGLDVVVIVNKIDQTG 340 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 RI ++ + +V S + G +L I ++F Sbjct: 341 RIDMERVRQLAGEN--PVVATSFLQEEGVDQLEEAISRLF 378 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 86/164 (52%), Gaps = 11/164 (6%) Query: 167 YPNHPLEMIENNKRNEE-----SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLIN 221 YP + E + NE+ + E + + K K + + L A++GRPNVGKS+L+N Sbjct: 180 YPEYDAETMTAKLINEKMTIVLAEIEALLATAKQG-KVLREGLATAIIGRPNVGKSSLMN 238 Query: 222 RLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQ 281 L+ + + G TRD++ N + P+ + DTAG+R+ I E + V++S Q Sbjct: 239 SLVHEAKAIVTDIPGTTRDTLEEYVNVRGVPLRLIDTAGIRETEDIVERI---GVERSRQ 295 Query: 282 SVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +++ + +++L+ K+D + ++V G VV+ +NK D Sbjct: 296 ALKEADLILLVLNYAEKLSKEDEALFEAV--KGLDVVVIVNKID 337 >gi|27469335|ref|NP_765972.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis ATCC 12228] gi|57865942|ref|YP_187603.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis RP62A] gi|293367584|ref|ZP_06614237.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis M23864:W2(grey)] gi|32171815|sp|Q8CMN5|MNME_STAES RecName: Full=tRNA modification GTPase mnmE gi|81675521|sp|Q5HS36|MNME_STAEQ RecName: Full=tRNA modification GTPase mnmE gi|27316885|gb|AAO06060.1|AE016752_93 putative thiophene and furan oxidation protein [Staphylococcus epidermidis ATCC 12228] gi|57636600|gb|AAW53388.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis RP62A] gi|291318297|gb|EFE58690.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis M23864:W2(grey)] gi|329735775|gb|EGG72056.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis VCU028] Length = 459 Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 41/127 (32%), Positives = 72/127 (56%), Gaps = 1/127 (0%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PNVGKS++ N L++ A+V G TRD L + GV +VDTAGI D ++ Sbjct: 226 IVGRPNVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRDTEDI 285 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 + K +++ A++EA LILF++++ +T D + ++ +++ +II ++ R+ Sbjct: 286 -VEKIGVERSRKALSEADLILFVLNNNEPLTEDDQTLFEVIKNEDVIVIINKTDLEQRLD 344 Query: 127 QRNFYEI 133 E+ Sbjct: 345 VSELREM 351 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 51/198 (25%), Positives = 101/198 (51%), Gaps = 16/198 (8%) Query: 174 MIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGS 233 ++E +KR +E + + + + + + + L +VGRPNVGKS+++N L+ N+ + Sbjct: 194 LLEQSKRIKEEINQLLETGAQGKI--MREGLSTVIVGRPNVGKSSMLNNLIQDNKAIVTE 251 Query: 234 QSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLL 293 +G TRD + N + P+ + DTAG+R I E + V++S +++ + + +L Sbjct: 252 VAGTTRDVLEEYVNVRGVPLRLVDTAGIRDTEDIVEKI---GVERSRKALSEADLILFVL 308 Query: 294 DATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYI 353 + P + D + + + N V++ +NK D L Q L ++ + IGD+ + Sbjct: 309 NNNEPLTEDDQTLFEVIKN--EDVIVIINKTD-------LEQRLDVSELREM--IGDMPL 357 Query: 354 NTISGRTGEGLDDLMVSV 371 S EG+D+L + + Sbjct: 358 IQTSMLKQEGIDELEIQI 375 >gi|242243258|ref|ZP_04797703.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis W23144] gi|242233207|gb|EES35519.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis W23144] Length = 459 Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 41/127 (32%), Positives = 72/127 (56%), Gaps = 1/127 (0%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PNVGKS++ N L++ A+V G TRD L + GV +VDTAGI D ++ Sbjct: 226 IVGRPNVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRDTEDI 285 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 + K +++ A++EA LILF++++ +T D + ++ +++ +II ++ R+ Sbjct: 286 -VEKIGVERSRKALSEADLILFVLNNNEPLTEDDQTLFEVIKNEDVIVIINKTDLEQRLD 344 Query: 127 QRNFYEI 133 E+ Sbjct: 345 VSELREM 351 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 54/198 (27%), Positives = 100/198 (50%), Gaps = 16/198 (8%) Query: 174 MIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGS 233 ++E +KR +E N E + K + + L +VGRPNVGKS+++N L+ N+ + Sbjct: 194 LLEQSKRIKEEI--NRLLETGAQGKIMREGLSTVIVGRPNVGKSSMLNNLIQDNKAIVTE 251 Query: 234 QSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLL 293 +G TRD + N + P+ + DTAG+R I E + V++S +++ + + +L Sbjct: 252 VAGTTRDVLEEYVNVRGVPLRLVDTAGIRDTEDIVEKI---GVERSRKALSEADLILFVL 308 Query: 294 DATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYI 353 + P + D + + + N V++ +NK D L Q L ++ + IGD+ + Sbjct: 309 NNNEPLTEDDQTLFEVIKN--EDVIVIINKTD-------LEQRLDVSELREM--IGDMPL 357 Query: 354 NTISGRTGEGLDDLMVSV 371 S EG+D+L + + Sbjct: 358 IQTSMLKQEGIDELEIQI 375 >gi|56417300|ref|YP_154374.1| tRNA modification GTPase TrmE [Anaplasma marginale str. St. Maries] gi|255004780|ref|ZP_05279581.1| tRNA modification GTPase TrmE [Anaplasma marginale str. Virginia] gi|81821241|sp|Q5P9B1|MNME_ANAMM RecName: Full=tRNA modification GTPase mnmE gi|56388532|gb|AAV87119.1| thiophene and furan oxidation protein [Anaplasma marginale str. St. Maries] Length = 443 Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 49/133 (36%), Positives = 74/133 (55%), Gaps = 8/133 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKSTLFN L ++ MA+V +PG TRD L I G F +VDTAGI + Sbjct: 217 VAILGKPNVGKSTLFNHLARRDMAIVSEYPGTTRDVLEAHVDIGGYPFIVVDTAGIREST 276 Query: 65 NCSIAKQ--MNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM- 121 + + ++ M ++E A + ++LF S+AG AI K I ++ ++ Sbjct: 277 DF-VEREGIMRAKSEAATADIRIMLF-PHSEAGNLGVHEAIEGGDDGKTIYVLSKADSAK 334 Query: 122 --DTRIAQ-RNFY 131 +TRI + + FY Sbjct: 335 EGETRIIEGKQFY 347 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 79/172 (45%), Gaps = 24/172 (13%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 +R+A++G+PNVGKSTL N L + + G TRD + + +P + DTAG+R+ Sbjct: 215 MRVAILGKPNVGKSTLFNHLARRDMAIVSEYPGTTRDVLEAHVDIGGYPFIVVDTAGIRE 274 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVL--------LDATIPFEKQD-------LRIVD 308 T+ +E++ + ++ T + I+L L E D L D Sbjct: 275 S---TDFVEREGIMRAKSEAATADIRIMLFPHSEAGNLGVHEAIEGGDDGKTIYVLSKAD 331 Query: 309 SVFNTGHAVVLALNKWDMVSDKLN-----LLQDLRTKAIKNLPQIGDIYINT 355 S G ++ ++ +VS N LL L+ +AI P+ GD+ I + Sbjct: 332 SA-KEGETRIIEGKQFYLVSVHTNLGVDSLLSALKERAIDGFPKSGDVLITS 382 >gi|319399917|gb|EFV88163.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis FRI909] Length = 459 Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 41/127 (32%), Positives = 72/127 (56%), Gaps = 1/127 (0%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PNVGKS++ N L++ A+V G TRD L + GV +VDTAGI D ++ Sbjct: 226 IVGRPNVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRDTEDI 285 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 + K +++ A++EA LILF++++ +T D + ++ +++ +II ++ R+ Sbjct: 286 -VEKIGVERSRKALSEADLILFVLNNNEPLTEDDQTLFEVIKNEDVIVIINKTDLEQRLD 344 Query: 127 QRNFYEI 133 E+ Sbjct: 345 VSELREM 351 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 54/198 (27%), Positives = 100/198 (50%), Gaps = 16/198 (8%) Query: 174 MIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGS 233 ++E +KR +E N E + K + + L +VGRPNVGKS+++N L+ N+ + Sbjct: 194 LLEQSKRIKEEI--NRLLETGAQGKIMREGLSTVIVGRPNVGKSSMLNNLIQDNKAIVTE 251 Query: 234 QSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLL 293 +G TRD + N + P+ + DTAG+R I E + V++S +++ + + +L Sbjct: 252 VAGTTRDVLEEYVNVRGVPLRLVDTAGIRDTEDIVEKI---GVERSRKALSEADLILFVL 308 Query: 294 DATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYI 353 + P + D + + + N V++ +NK D L Q L ++ + IGD+ + Sbjct: 309 NNNEPLTEDDQTLFEVIKN--EDVIVIINKTD-------LEQRLDVSELREM--IGDMPL 357 Query: 354 NTISGRTGEGLDDLMVSV 371 S EG+D+L + + Sbjct: 358 IQTSMLKQEGIDELEIQI 375 >gi|71903433|ref|YP_280236.1| tRNA modification GTPase TrmE [Streptococcus pyogenes MGAS6180] gi|123639929|sp|Q48TS5|MNME_STRPM RecName: Full=tRNA modification GTPase mnmE gi|71802528|gb|AAX71881.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase [Streptococcus pyogenes MGAS6180] Length = 458 Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 44/144 (30%), Positives = 83/144 (57%), Gaps = 6/144 (4%) Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 +S EN+ K K + + L A++GRPNVGKS+L+N LL ++ + +G TRD + Sbjct: 205 QSLLENLLRTAKRG-KILREGLSTAIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVI 263 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 N K P+++ DTAG+R+ + +EQ V++S ++++ + +++L+A+ Q Sbjct: 264 EEYVNIKGVPLKLVDTAGIRETDDL---VEQIGVERSKKALQEADLVLLVLNASEKLTDQ 320 Query: 303 DLRIVDSVFNTGHAVVLALNKWDM 326 D +++ + G ++ LNK D+ Sbjct: 321 DRALLN--LSQGSNRIILLNKTDL 342 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 42/118 (35%), Positives = 71/118 (60%), Gaps = 5/118 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+++ A+V + G TRD + I GV +VDTAGI + + Sbjct: 228 AIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPLKLVDTAGIRETDD 287 Query: 66 CSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + +Q+ ++++ A+ EA L+L ++++ +T D A+ + + N II+ NK D Sbjct: 288 --LVEQIGVERSKKALQEADLVLLVLNASEKLTDQDRALLNLSQGSN--RIILLNKTD 341 >gi|315608192|ref|ZP_07883184.1| tRNA modification GTPase TrmE [Prevotella buccae ATCC 33574] gi|315250161|gb|EFU30158.1| tRNA modification GTPase TrmE [Prevotella buccae ATCC 33574] Length = 512 Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 47/130 (36%), Positives = 75/130 (57%), Gaps = 10/130 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG NVGKSTL NRL+ ++ A+V + G TRD + +INGV F +DTAGI + Sbjct: 228 VAIVGKTNVGKSTLLNRLLHEERAIVSDIHGTTRDTIEDTTLINGVAFRFIDTAGIRKTE 287 Query: 65 NCSIAKQMNDQTELAINEAHLILFLID-SKAGITPYDHAITSFLRKKNIP--IIIVSNKM 121 + + + D+T I++A +++++ID S + + D +R K I +I+V NK+ Sbjct: 288 D-EVERIGIDRTYQKIDQATVVVWMIDTSPSALEQED------MRSKCIGKNVILVHNKV 340 Query: 122 DTRIAQRNFY 131 D + Y Sbjct: 341 DIALTHSPSY 350 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 62/123 (50%), Gaps = 8/123 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VG+ NVGKSTL+NRLL R + G TRD++ + DTAG+RK Sbjct: 228 VAIVGKTNVGKSTLLNRLLHEERAIVSDIHGTTRDTIEDTTLINGVAFRFIDTAGIRKTE 287 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDAT-IPFEKQDLRIVDSVFNTGHAVVLALNKW 324 + +E+ + ++ Q + + ++D + E++D+R G V+L NK Sbjct: 288 ---DEVERIGIDRTYQKIDQATVVVWMIDTSPSALEQEDMR----SKCIGKNVILVHNKV 340 Query: 325 DMV 327 D+ Sbjct: 341 DIA 343 >gi|259048142|ref|ZP_05738543.1| tRNA modification GTPase TrmE [Granulicatella adiacens ATCC 49175] gi|259035203|gb|EEW36458.1| tRNA modification GTPase TrmE [Granulicatella adiacens ATCC 49175] Length = 462 Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 41/139 (29%), Positives = 79/139 (56%), Gaps = 9/139 (6%) Query: 188 NITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWN 247 N S+GK + L+ A+VGRPNVGKS+L+N LL + + +G TRD++ N Sbjct: 213 NTASQGKI----LRDGLKAAIVGRPNVGKSSLLNVLLREEKAIVTDIAGTTRDTIEEYVN 268 Query: 248 WKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIV 307 + P+++ DTAG+R+ + E + V++S +++ + +++L+ + +DLR++ Sbjct: 269 VRGVPLQLIDTAGIRETDDVVERI---GVERSRKALNEADFVLLILNQSEELRDEDLRLL 325 Query: 308 DSVFNTGHAVVLALNKWDM 326 + + ++ LNK D+ Sbjct: 326 EQTKDFKR--IILLNKTDL 342 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 52/167 (31%), Positives = 84/167 (50%), Gaps = 7/167 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AIVG PNVGKS+L N L++++ A+V + G TRD + + GV ++DTAGI + + Sbjct: 228 AIVGRPNVGKSSLLNVLLREEKAIVTDIAGTTRDTIEEYVNVRGVPLQLIDTAGIRETDD 287 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD--T 123 + + +++ A+NEA +L +++ + D + + K+ II+ NK D T Sbjct: 288 V-VERIGVERSRKALNEADFVLLILNQSEEL--RDEDLRLLEQTKDFKRIILLNKTDLPT 344 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNH 170 +I E ++ D EIV S G +L I F Q N Sbjct: 345 KIDMDKVKE-FATD-SEIVTTSMLKKEGIDQLEEKIADYFFQGQMNE 389 >gi|222475664|ref|YP_002564081.1| thiophene and furan oxidation protein (thdF) [Anaplasma marginale str. Florida] gi|255003656|ref|ZP_05278620.1| tRNA modification GTPase TrmE [Anaplasma marginale str. Puerto Rico] gi|222419802|gb|ACM49825.1| thiophene and furan oxidation protein (thdF) [Anaplasma marginale str. Florida] Length = 443 Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 49/133 (36%), Positives = 74/133 (55%), Gaps = 8/133 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKSTLFN L ++ MA+V +PG TRD L I G F +VDTAGI + Sbjct: 217 VAILGKPNVGKSTLFNHLARRDMAIVSEYPGTTRDVLEAHVDIGGYPFIVVDTAGIREST 276 Query: 65 NCSIAKQ--MNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM- 121 + + ++ M ++E A + ++LF S+AG AI K I ++ ++ Sbjct: 277 DF-VEREGIMRAKSEAATADIRIMLF-PHSEAGNLGVHEAIEGGDDGKTIYVLSKADSAK 334 Query: 122 --DTRIAQ-RNFY 131 +TRI + + FY Sbjct: 335 EGETRIIEGKQFY 347 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 79/172 (45%), Gaps = 24/172 (13%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 +R+A++G+PNVGKSTL N L + + G TRD + + +P + DTAG+R+ Sbjct: 215 MRVAILGKPNVGKSTLFNHLARRDMAIVSEYPGTTRDVLEAHVDIGGYPFIVVDTAGIRE 274 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVL--------LDATIPFEKQD-------LRIVD 308 T+ +E++ + ++ T + I+L L E D L D Sbjct: 275 S---TDFVEREGIMRAKSEAATADIRIMLFPHSEAGNLGVHEAIEGGDDGKTIYVLSKAD 331 Query: 309 SVFNTGHAVVLALNKWDMVSDKLN-----LLQDLRTKAIKNLPQIGDIYINT 355 S G ++ ++ +VS N LL L+ +AI P+ GD+ I + Sbjct: 332 SA-KEGETRIIEGKQFYLVSVHTNLGVDSLLSALKERAIDGFPKSGDVLITS 382 >gi|194476819|ref|YP_002048998.1| tRNA modification GTPase [Paulinella chromatophora] gi|171191826|gb|ACB42788.1| tRNA modification GTPase [Paulinella chromatophora] Length = 406 Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 44/118 (37%), Positives = 70/118 (59%), Gaps = 2/118 (1%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKS+L NRL +++ A+V + PG TRD + + I+NGV ++DTAGI + Sbjct: 173 IALVGRPNVGKSSLLNRLSRRERAIVTDIPGTTRDLIETEIILNGVPITLLDTAGIQVTE 232 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + + K +++ AI A I+ + D G T D + + ++ ++IV NK D Sbjct: 233 D-KVEKVGIERSREAIASADAIVLVFDLVEGWTLADAILLKEI-PSDVTLLIVGNKAD 288 Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 33/96 (34%), Positives = 57/96 (59%), Gaps = 5/96 (5%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + LRIA+VGRPNVGKS+L+NRL R + G TRD + PI + DTA Sbjct: 167 VQRGLRIALVGRPNVGKSSLLNRLSRRERAIVTDIPGTTRDLIETEIILNGVPITLLDTA 226 Query: 260 GMRKPSRITES-LEQKTVKKSMQSVRTCETTIVLLD 294 G+ ++TE +E+ +++S +++ + + +++ D Sbjct: 227 GI----QVTEDKVEKVGIERSREAIASADAIVLVFD 258 >gi|307545609|ref|YP_003898088.1| GTP-binding protein Era [Halomonas elongata DSM 2581] gi|307217633|emb|CBV42903.1| GTP-binding protein Era [Halomonas elongata DSM 2581] Length = 299 Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 52/182 (28%), Positives = 88/182 (48%), Gaps = 11/182 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI---A 61 +AIVG PNVGKSTL N ++ +K+++ P TR ++ G F VDT GI Sbjct: 8 VAIVGRPNVGKSTLMNHILGQKISITSRRPQTTRHQVMGIKTEGDAQFIYVDTPGIHLLE 67 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 +N +I + MN A+ + ++F+ID + T D + L P+I+ NK+ Sbjct: 68 KDRNKAINRFMNQAATQALRDVDCVIFIID-RTRWTAEDQVVLERLATVEAPVILAVNKV 126 Query: 122 DTRIAQRN-----FYEIYS-LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 D R+ ++ E+ +F IV I+A+H +EL + + K + P + + Sbjct: 127 D-RLNDKSTLLPWLDEVRGRREFAAIVPIAAKHGTNVAELEAEVAKYLPESVHYFPDDQV 185 Query: 176 EN 177 + Sbjct: 186 TD 187 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 10/134 (7%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VGRPNVGKSTL+N +LG +T + TR V + DT G+ Sbjct: 8 VAIVGRPNVGKSTLMNHILGQKISITSRRPQTTRHQVMGIKTEGDAQFIYVDTPGI---- 63 Query: 266 RITESLEQKTVKKSM-----QSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLA 320 + E K + + M Q++R + I ++D T + +D +++ + V+LA Sbjct: 64 HLLEKDRNKAINRFMNQAATQALRDVDCVIFIIDRT-RWTAEDQVVLERLATVEAPVILA 122 Query: 321 LNKWDMVSDKLNLL 334 +NK D ++DK LL Sbjct: 123 VNKVDRLNDKSTLL 136 >gi|255027717|ref|ZP_05299703.1| GTP-binding protein Era [Listeria monocytogenes FSL J2-003] Length = 301 Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 49/150 (32%), Positives = 80/150 (53%), Gaps = 13/150 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N ++ +K+A++ + TR+++ G + +DT GI K Sbjct: 10 VAIVGRPNVGKSTLLNHIIGQKIAIMSDKAQTTRNKVQGVYTTDESQIIFIDTPGIHKPK 69 Query: 65 NCSIAKQMNDQTELAIN---EAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 + K + ++A+N E LI F+ID+ G D I L+ P+ ++ NK+ Sbjct: 70 H----KLGDFMVKIALNTFQEVDLIYFVIDASTGFGRGDEFIVEKLKNVQTPVFLLINKI 125 Query: 122 DTRIAQRNFYEIYS-----LDFKEIVEISA 146 D IA + +++ +DF EI+ ISA Sbjct: 126 DL-IAPEDLFKLIEQYRDLMDFDEIIPISA 154 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 43/144 (29%), Positives = 74/144 (51%), Gaps = 8/144 (5%) Query: 200 ISKPLR---IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIF 256 +S+P + +A+VGRPNVGKSTL+N ++G + ++ TR+ V + I Sbjct: 1 MSEPFKSGFVAIVGRPNVGKSTLLNHIIGQKIAIMSDKAQTTRNKVQGVYTTDESQIIFI 60 Query: 257 DTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHA 316 DT G+ KP L VK ++ + + + ++DA+ F + D IV+ + N Sbjct: 61 DTPGIHKPKH---KLGDFMVKIALNTFQEVDLIYFVIDASTGFGRGDEFIVEKLKNVQTP 117 Query: 317 VVLALNKWDMVS--DKLNLLQDLR 338 V L +NK D+++ D L++ R Sbjct: 118 VFLLINKIDLIAPEDLFKLIEQYR 141 >gi|153873147|ref|ZP_02001823.1| tRNA modification GTPase [Beggiatoa sp. PS] gi|152070386|gb|EDN68176.1| tRNA modification GTPase [Beggiatoa sp. PS] Length = 444 Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 44/118 (37%), Positives = 70/118 (59%), Gaps = 4/118 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 I +VG PNVGKS+L N L ++ A+V PG TRD + Q ING+ +I DTAG+ + + Sbjct: 219 IVLVGEPNVGKSSLLNSLAGRETAIVTPLPGTTRDVVRDQIQINGMPLHITDTAGLRETE 278 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + + + +T+LA+ EA L++ L+D + D + L + + P +IV NK+D Sbjct: 279 DLVELEGIR-RTKLALKEADLVIVLLDDR---HSNDSIHANLLAELDKPPLIVRNKID 332 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 55/171 (32%), Positives = 89/171 (52%), Gaps = 27/171 (15%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + +RI +VG PNVGKS+L+N L G + G TRD V P+ I DTA Sbjct: 213 LKEGMRIVLVGEPNVGKSSLLNSLAGRETAIVTPLPGTTRDVVRDQIQINGMPLHITDTA 272 Query: 260 GMRKPSRITESL-EQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVV 318 G+R+ TE L E + ++++ +++ + IVLLD D DS+ HA + Sbjct: 273 GLRE----TEDLVELEGIRRTKLALKEADLVIVLLD--------DRHSNDSI----HANL 316 Query: 319 LA-LNKWDM-VSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDL 367 LA L+K + V +K++L + + + G +Y +S +TGEG++ L Sbjct: 317 LAELDKPPLIVRNKIDL-----SGHRAGMNEEGILY---LSAKTGEGIEQL 359 >gi|306822848|ref|ZP_07456224.1| GTP-binding protein Era [Bifidobacterium dentium ATCC 27679] gi|304553480|gb|EFM41391.1| GTP-binding protein Era [Bifidobacterium dentium ATCC 27679] Length = 333 Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 62/203 (30%), Positives = 98/203 (48%), Gaps = 24/203 (11%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTL N L+ ++A+ + P TR + G + +VDT GI + Sbjct: 28 VAVVGRPNVGKSTLINALIGTQIAIASSRPETTRKAIRGILTTDNAQIVLVDTPGIHRPR 87 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLR------------KKNI 112 + +++ND + ++ + I FL+ I P D I S LR K + Sbjct: 88 TL-LGQRLNDVVDESLADVDAIAFLLPGDQEIGPGDKRILSRLRSEFAAKRDDGTFKWKV 146 Query: 113 PIIIVSNKMD--TRIAQRN-FYEIYSL-DFKEIVEISA-EHDLGTSELHSVIFKIFKQKY 167 P+I + K+D +R N EI DF +IV +SA +HD SE+ +V+ + + Sbjct: 147 PLIAIVTKIDELSREGLINKLIEINEFADFTDIVPVSALKHD-NLSEVRNVLVENMPEGP 205 Query: 168 PNHPLEMIENNKRNEESPKENIT 190 +P E I EE P++ I Sbjct: 206 QMYPAEQI-----TEERPEDTIA 223 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 41/78 (52%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +AVVGRPNVGKSTLIN L+G + S+ TR ++ N I + DT G+ +P Sbjct: 28 VAVVGRPNVGKSTLINALIGTQIAIASSRPETTRKAIRGILTTDNAQIVLVDTPGIHRPR 87 Query: 266 RITESLEQKTVKKSMQSV 283 + V +S+ V Sbjct: 88 TLLGQRLNDVVDESLADV 105 >gi|295693883|ref|YP_003602493.1| tRNA modification GTPase mnme [Lactobacillus crispatus ST1] gi|295031989|emb|CBL51468.1| tRNA modification GTPase mnmE [Lactobacillus crispatus ST1] Length = 461 Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 54/177 (30%), Positives = 89/177 (50%), Gaps = 6/177 (3%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AIVG PNVGKS+L N L + A+V + G TRD L + GV ++DTAGI ++ Sbjct: 228 AIVGRPNVGKSSLLNYLTQSDKAIVTDVAGTTRDTLEEYVSVKGVPLELIDTAGIHHTED 287 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 + K ++++ A+ A L+L LID+ +T D A+ + K I++ NK D + Sbjct: 288 -KVEKIGVERSKKALERADLVLLLIDASQALTAEDQALIEATKDKK--RIVILNKSD--L 342 Query: 126 AQR-NFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 Q+ E+ L +++ S + L +I K+F N +++ N+R Sbjct: 343 GQKITTTEMEKLTGSDVISTSILKEQNLDALEELINKLFFAGIENSNDQIMVTNQRQ 399 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 71/123 (57%), Gaps = 5/123 (4%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 L A+VGRPNVGKS+L+N L ++ + +G TRD++ + K P+E+ DTAG+ Sbjct: 225 LATAIVGRPNVGKSSLLNYLTQSDKAIVTDVAGTTRDTLEEYVSVKGVPLELIDTAGIHH 284 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 + +E+ V++S +++ + ++L+DA+ +D ++++ + V+ LNK Sbjct: 285 TE---DKVEKIGVERSKKALERADLVLLLIDASQALTAEDQALIEATKDKKRIVI--LNK 339 Query: 324 WDM 326 D+ Sbjct: 340 SDL 342 >gi|289578133|ref|YP_003476760.1| GTP-binding protein Era [Thermoanaerobacter italicus Ab9] gi|289527846|gb|ADD02198.1| GTP-binding protein Era [Thermoanaerobacter italicus Ab9] Length = 302 Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 49/148 (33%), Positives = 83/148 (56%), Gaps = 9/148 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A++G NVGKSTL N ++++K+A+ P TR+ + G + VDT GI K Sbjct: 8 VALIGRTNVGKSTLLNAILQEKIAITSPKPQTTRNTIRGILTTDEYQVIFVDTPGIHKPK 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD-- 122 + +++ M + + + E LIL++I+ I P D I L++ + P+I+V NK+D Sbjct: 68 S-KLSEFMIEVAKRTLKEVDLILYMIEPDTEIGPGDRYIIEHLKEVDTPVILVVNKIDLV 126 Query: 123 --TRIAQ--RNFYEIYSLDFKEIVEISA 146 RI + + F + Y+ FK++V ISA Sbjct: 127 PEERIEETIKIFKKEYA--FKDVVAISA 152 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 30/126 (23%), Positives = 67/126 (53%), Gaps = 5/126 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP- 264 +A++GR NVGKSTL+N +L +T + TR+++ + + DT G+ KP Sbjct: 8 VALIGRTNVGKSTLLNAILQEKIAITSPKPQTTRNTIRGILTTDEYQVIFVDTPGIHKPK 67 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 S+++E + ++ + ++++ + + +++ D I++ + V+L +NK Sbjct: 68 SKLSEFM----IEVAKRTLKEVDLILYMIEPDTEIGPGDRYIIEHLKEVDTPVILVVNKI 123 Query: 325 DMVSDK 330 D+V ++ Sbjct: 124 DLVPEE 129 >gi|257138459|ref|ZP_05586721.1| GTP-binding protein Era [Burkholderia thailandensis E264] Length = 287 Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 47/150 (31%), Positives = 79/150 (52%), Gaps = 9/150 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N LV +K+++ TR R+ G ++ + VDT G Sbjct: 2 IAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRITGIRTLDDAQYVFVDTPGFQTRH 61 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + ++ + +N + ILF+I++ P D + + P ++V+NK+D R Sbjct: 62 STALNRSLNRAVTSTLTSVDAILFVIEA-GRFGPDDQKVLDLI-PPGTPTLLVANKLD-R 118 Query: 125 IAQRN-----FYEIYSL-DFKEIVEISAEH 148 ++ ++ F ++ L +F EIV +SA+H Sbjct: 119 VSDKDTLYPFFQKMGELREFAEIVPLSAKH 148 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 40/128 (31%), Positives = 66/128 (51%), Gaps = 4/128 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA+VGRPNVGKSTL+N L+G +T ++ TR ++ + DT G + + Sbjct: 2 IAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRITGIRTLDDAQYVFVDTPGFQ--T 59 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 R + +L +++ +++ S T I+ + F D +++D + G +L NK D Sbjct: 60 RHSTAL-NRSLNRAVTSTLTSVDAILFVIEAGRFGPDDQKVLD-LIPPGTPTLLVANKLD 117 Query: 326 MVSDKLNL 333 VSDK L Sbjct: 118 RVSDKDTL 125 >gi|332967862|gb|EGK06958.1| tRNA modification GTPase TrmE [Kingella kingae ATCC 23330] Length = 459 Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 47/120 (39%), Positives = 67/120 (55%), Gaps = 2/120 (1%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + +VGAPNVGKS+L N L +A+V N G TRD + Q ++GV +I DTAG+ Sbjct: 223 VVLVGAPNVGKSSLLNALAGDDVAIVTNIAGTTRDTVREQITLDGVPIHITDTAGLRQTD 282 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + K +++E A+ A + L LID GI P AI L ++ I V NK+D R Sbjct: 283 DV-VEKIGIERSEKAVQNADVALILIDPAEGINPTTQAILDKL-PTSLQRIEVHNKIDLR 340 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 46/174 (26%), Positives = 88/174 (50%), Gaps = 9/174 (5%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + + + +VG PNVGKS+L+N L G + + + +G TRD+V PI I DTA Sbjct: 217 LREGMNVVLVGAPNVGKSSLLNALAGDDVAIVTNIAGTTRDTVREQITLDGVPIHITDTA 276 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R+ + E + +++S ++V+ + ++L+D I+D + + + + Sbjct: 277 GLRQTDDVVEKI---GIERSEKAVQNADVALILIDPAEGINPTTQAILDKLPTSLQRIEV 333 Query: 320 ALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 NK D+ + + L ++ D+ I +S +TG GLD L ++L+ Sbjct: 334 H-NKIDLRDESAS----LHNESAGCFLSGADVLIK-LSAKTGAGLDLLKQTLLD 381 >gi|116872893|ref|YP_849674.1| GTP-binding protein Era [Listeria welshimeri serovar 6b str. SLCC5334] gi|123461073|sp|A0AIR3|ERA_LISW6 RecName: Full=GTPase Era gi|116741771|emb|CAK20895.1| GTP-binding protein Era [Listeria welshimeri serovar 6b str. SLCC5334] Length = 301 Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 49/150 (32%), Positives = 81/150 (54%), Gaps = 13/150 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N ++ +K+A++ + TR+++ G + +DT GI K Sbjct: 10 VAIVGRPNVGKSTLLNHIIGQKIAIMSDKAQTTRNKVQGVYTTDESQIIFIDTPGIHKPK 69 Query: 65 NCSIAKQMNDQTELAIN---EAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 + K + ++A+N E LI F+ID+ G D I L+ P+ ++ NK+ Sbjct: 70 H----KLGDFMVKIALNTFQEVDLIYFVIDASTGFGRGDEFIIEKLKNVQTPVFLLINKI 125 Query: 122 DTRIAQRNFYEIYS-----LDFKEIVEISA 146 D I+ + +++ LDF+EI+ ISA Sbjct: 126 DL-ISPEDLFKLIEQYRELLDFEEIIPISA 154 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 43/144 (29%), Positives = 74/144 (51%), Gaps = 8/144 (5%) Query: 200 ISKPLR---IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIF 256 +S+P + +A+VGRPNVGKSTL+N ++G + ++ TR+ V + I Sbjct: 1 MSEPFKSGFVAIVGRPNVGKSTLLNHIIGQKIAIMSDKAQTTRNKVQGVYTTDESQIIFI 60 Query: 257 DTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHA 316 DT G+ KP L VK ++ + + + ++DA+ F + D I++ + N Sbjct: 61 DTPGIHKPKH---KLGDFMVKIALNTFQEVDLIYFVIDASTGFGRGDEFIIEKLKNVQTP 117 Query: 317 VVLALNKWDMVS--DKLNLLQDLR 338 V L +NK D++S D L++ R Sbjct: 118 VFLLINKIDLISPEDLFKLIEQYR 141 >gi|83719946|ref|YP_442266.1| GTP-binding protein Era [Burkholderia thailandensis E264] gi|167619237|ref|ZP_02387868.1| GTP-binding protein Era [Burkholderia thailandensis Bt4] gi|83653771|gb|ABC37834.1| GTP-binding protein Era [Burkholderia thailandensis E264] Length = 299 Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 45/149 (30%), Positives = 73/149 (48%), Gaps = 7/149 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N LV +K+++ TR R+ G ++ + VDT G Sbjct: 14 IAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRITGIRTLDDAQYVFVDTPGFQTRH 73 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + ++ + +N + ILF+I++ P D + + P ++V+NK+D Sbjct: 74 STALNRSLNRAVTSTLTSVDAILFVIEA-GRFGPDDQKVLDLI-PPGTPTLLVANKLDRV 131 Query: 125 IAQRNFYEIYS-----LDFKEIVEISAEH 148 + Y + +F EIV +SA+H Sbjct: 132 SDKDTLYPFFQKMGELREFAEIVPLSAKH 160 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 40/128 (31%), Positives = 66/128 (51%), Gaps = 4/128 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA+VGRPNVGKSTL+N L+G +T ++ TR ++ + DT G + + Sbjct: 14 IAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRITGIRTLDDAQYVFVDTPGFQ--T 71 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 R + +L +++ +++ S T I+ + F D +++D + G +L NK D Sbjct: 72 RHSTAL-NRSLNRAVTSTLTSVDAILFVIEAGRFGPDDQKVLD-LIPPGTPTLLVANKLD 129 Query: 326 MVSDKLNL 333 VSDK L Sbjct: 130 RVSDKDTL 137 >gi|219670950|ref|YP_002461385.1| tRNA modification GTPase TrmE [Desulfitobacterium hafniense DCB-2] gi|219541210|gb|ACL22949.1| tRNA modification GTPase TrmE [Desulfitobacterium hafniense DCB-2] Length = 459 Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 56/198 (28%), Positives = 100/198 (50%), Gaps = 9/198 (4%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PNVGKS+L N L+ ++ A+V + PG TRD + I G++ +VDTAG+ + ++ Sbjct: 224 IVGQPNVGKSSLLNALMGEERAIVTDIPGTTRDEIRESVTIGGILLQLVDTAGLRESEDL 283 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 + K +++ A+ +A LIL +I + + + I L + + +I++ NKMD + Sbjct: 284 -VEKLGIERSWKAMEKAELILLIIQAGQELKAEELKI---LNQYDQSVIVLINKMDLLVG 339 Query: 127 QRNFYEI---YSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + E+ Y + S + +LG +L I + Q E + +N R Sbjct: 340 KEQGEEVLENYPTQQGVWIPFSVKENLGFKQLEKEIKQRVYQGKAEKTKEPLLSNIRQIT 399 Query: 184 SPKENIT--SEGKSSVKN 199 + + ++ + G SVKN Sbjct: 400 ALERAVSALANGWDSVKN 417 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 36/139 (25%), Positives = 77/139 (55%), Gaps = 6/139 (4%) Query: 192 EGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNH 251 +G + + + + + +VG+PNVGKS+L+N L+G R + G TRD + S Sbjct: 208 DGSKTGRILREGMLTVIVGQPNVGKSSLLNALMGEERAIVTDIPGTTRDEIRESVTIGGI 267 Query: 252 PIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVF 311 +++ DTAG+R+ + E L +++S +++ E ++++ A + ++L+I++ Sbjct: 268 LLQLVDTAGLRESEDLVEKL---GIERSWKAMEKAELILLIIQAGQELKAEELKILN--- 321 Query: 312 NTGHAVVLALNKWDMVSDK 330 +V++ +NK D++ K Sbjct: 322 QYDQSVIVLINKMDLLVGK 340 >gi|297544408|ref|YP_003676710.1| GTP-binding protein Era [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842183|gb|ADH60699.1| GTP-binding protein Era [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 302 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 49/148 (33%), Positives = 83/148 (56%), Gaps = 9/148 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A++G NVGKSTL N ++++K+A+ P TR+ + G + VDT GI K Sbjct: 8 VALIGRTNVGKSTLLNAILQEKIAITSPKPQTTRNTIRGILTTDEYQVIFVDTPGIHKPK 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD-- 122 + +++ M + + + E LIL++I+ I P D I L++ + P+I+V NK+D Sbjct: 68 S-KLSEFMIEVAKRTLKEVDLILYMIEPDTEIGPGDRYIIEHLKEVDTPVILVVNKIDLV 126 Query: 123 --TRIAQ--RNFYEIYSLDFKEIVEISA 146 RI + + F + Y+ FK++V ISA Sbjct: 127 PEERIEETIKIFKKEYA--FKDVVAISA 152 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 30/126 (23%), Positives = 67/126 (53%), Gaps = 5/126 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP- 264 +A++GR NVGKSTL+N +L +T + TR+++ + + DT G+ KP Sbjct: 8 VALIGRTNVGKSTLLNAILQEKIAITSPKPQTTRNTIRGILTTDEYQVIFVDTPGIHKPK 67 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 S+++E + ++ + ++++ + + +++ D I++ + V+L +NK Sbjct: 68 SKLSEFM----IEVAKRTLKEVDLILYMIEPDTEIGPGDRYIIEHLKEVDTPVILVVNKI 123 Query: 325 DMVSDK 330 D+V ++ Sbjct: 124 DLVPEE 129 >gi|227544911|ref|ZP_03974960.1| GTP-binding protein Era [Lactobacillus reuteri CF48-3A] gi|300910062|ref|ZP_07127522.1| GTP-binding protein Era [Lactobacillus reuteri SD2112] gi|227185123|gb|EEI65194.1| GTP-binding protein Era [Lactobacillus reuteri CF48-3A] gi|300892710|gb|EFK86070.1| GTP-binding protein Era [Lactobacillus reuteri SD2112] Length = 301 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 60/180 (33%), Positives = 88/180 (48%), Gaps = 15/180 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKSTL N +V +K+A++ N TR+++ G +DT GI Sbjct: 11 VAIIGRPNVGKSTLLNYVVGQKVAIMSNVAQTTRNKIQGIYTSPEAQIIFIDTPGIHK-P 69 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + M A++E +LF++ + P D I L+K N PI +V NK+D + Sbjct: 70 STKLGDFMEKSAMSALDEVDAVLFVVSATEKRGPGDDFIIERLKKVNQPIFLVVNKID-Q 128 Query: 125 IAQRNFYEIY-----SLDFKEIVEISAEHDLGTSELHSVIFKIF---KQKYP-----NHP 171 I + EI +L FK IV ISA + L + I KI Q YP +HP Sbjct: 129 INPNDLPEIVDQYKDTLPFKGIVPISALQGNNVNNLINDIIKILPNGPQYYPADQVSDHP 188 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/178 (24%), Positives = 85/178 (47%), Gaps = 26/178 (14%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKSTL+N ++G + + + TR+ + + I DT G+ KPS Sbjct: 11 VAIIGRPNVGKSTLLNYVVGQKVAIMSNVAQTTRNKIQGIYTSPEAQIIFIDTPGIHKPS 70 Query: 266 -RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 ++ + +E K +M ++ + + ++ AT D I++ + + L +NK Sbjct: 71 TKLGDFME----KSAMSALDEVDAVLFVVSATEKRGPGDDFIIERLKKVNQPIFLVVNKI 126 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINT--------ISGRTGEGLDDLMVSVLEI 374 D ++ +LP+I D Y +T IS G +++L+ +++I Sbjct: 127 DQINP-------------NDLPEIVDQYKDTLPFKGIVPISALQGNNVNNLINDIIKI 171 >gi|118586863|ref|ZP_01544297.1| GTP-binding protein Era [Oenococcus oeni ATCC BAA-1163] gi|118432695|gb|EAV39427.1| GTP-binding protein Era [Oenococcus oeni ATCC BAA-1163] Length = 309 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 51/151 (33%), Positives = 83/151 (54%), Gaps = 10/151 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKSTL N ++ +K+A++ + TR+++ G +DT GI Sbjct: 14 VAIIGRPNVGKSTLLNYIIGQKVAIISSKAQTTRNKIAGIYTTEEAQVVFLDTPGIHKPY 73 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRK-KNIPIIIVSNKMDT 123 N S+ + M + A+NEA + F++D+ D+ I L+K KN PI ++ NK+D Sbjct: 74 N-SLDEYMEKASFGALNEADAVWFVVDATEKRGGGDNFIIERLKKIKNTPIYLLVNKIDL 132 Query: 124 RIAQRN-------FYEIYSLDFKEIVEISAE 147 I ++N Y + SLD+ E+ ISA+ Sbjct: 133 -IKKKNDLFQAISSYTVDSLDWSEVYPISAK 162 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 90/169 (53%), Gaps = 7/169 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKSTL+N ++G + S++ TR+ ++ + + + DT G+ KP Sbjct: 14 VAIIGRPNVGKSTLLNYIIGQKVAIISSKAQTTRNKIAGIYTTEEAQVVFLDTPGIHKPY 73 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHA-VVLALNKW 324 SL++ K S ++ + ++DAT D I++ + + + L +NK Sbjct: 74 N---SLDEYMEKASFGALNEADAVWFVVDATEKRGGGDNFIIERLKKIKNTPIYLLVNKI 130 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 D++ K +L Q + + + +L ++Y IS ++GE ++ L+ V+E Sbjct: 131 DLIKKKNDLFQAISSYTVDSL-DWSEVY--PISAKSGEQVNALVDDVIE 176 >gi|332687269|ref|YP_004457043.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Melissococcus plutonius ATCC 35311] gi|332371278|dbj|BAK22234.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Melissococcus plutonius ATCC 35311] Length = 466 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 39/129 (30%), Positives = 74/129 (57%), Gaps = 5/129 (3%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L +VGRPNVGKS+L+N LL + + +G TRD++ N + P+++ D Sbjct: 222 KILREGLSTVIVGRPNVGKSSLLNHLLKEEKAIVTDVAGTTRDTIEEYINLRGIPLKLVD 281 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+ + I E + V+KS Q+++T + +++L+ + +D ++++ G Sbjct: 282 TAGIHETEDIVEKI---GVEKSRQALQTADLIVLVLNQSEELTNEDQQLLE--MTGGLKR 336 Query: 318 VLALNKWDM 326 ++ LNK D+ Sbjct: 337 IILLNKMDL 345 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/159 (29%), Positives = 82/159 (51%), Gaps = 6/159 (3%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PNVGKS+L N L+K++ A+V + G TRD + + G+ +VDTAGI + ++ Sbjct: 232 IVGRPNVGKSSLLNHLLKEEKAIVTDVAGTTRDTIEEYINLRGIPLKLVDTAGIHETEDI 291 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD--TR 124 + K +++ A+ A LI+ +++ +T D + + II+ NKMD + Sbjct: 292 -VEKIGVEKSRQALQTADLIVLVLNQSEELTNEDQQLLEM--TGGLKRIILLNKMDLPNQ 348 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 + + S D +E++ +S G +L I +F Sbjct: 349 LEKEKLRSFLS-DQEELLPVSVLSSEGIDKLEIEIANLF 386 >gi|167581152|ref|ZP_02374026.1| GTP-binding protein Era [Burkholderia thailandensis TXDOH] Length = 299 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 47/150 (31%), Positives = 79/150 (52%), Gaps = 9/150 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N LV +K+++ TR R+ G ++ + VDT G Sbjct: 14 IAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRITGIRTLDDAQYVFVDTPGFQTRH 73 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + ++ + +N + ILF+I++ P D + + P ++V+NK+D R Sbjct: 74 STALNRSLNRAVTSTLTSVDAILFVIEA-GRFGPDDQKVLDLI-PPGTPTLLVANKLD-R 130 Query: 125 IAQRN-----FYEIYSL-DFKEIVEISAEH 148 ++ ++ F ++ L +F EIV +SA+H Sbjct: 131 VSDKDTLYPFFRKMGELREFAEIVPLSAKH 160 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 40/128 (31%), Positives = 66/128 (51%), Gaps = 4/128 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA+VGRPNVGKSTL+N L+G +T ++ TR ++ + DT G + + Sbjct: 14 IAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRITGIRTLDDAQYVFVDTPGFQ--T 71 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 R + +L +++ +++ S T I+ + F D +++D + G +L NK D Sbjct: 72 RHSTAL-NRSLNRAVTSTLTSVDAILFVIEAGRFGPDDQKVLD-LIPPGTPTLLVANKLD 129 Query: 326 MVSDKLNL 333 VSDK L Sbjct: 130 RVSDKDTL 137 >gi|148543969|ref|YP_001271339.1| GTP-binding protein Era [Lactobacillus reuteri DSM 20016] gi|184153364|ref|YP_001841705.1| GTP-binding protein [Lactobacillus reuteri JCM 1112] gi|227364882|ref|ZP_03848928.1| GTP-binding protein Era [Lactobacillus reuteri MM2-3] gi|325682493|ref|ZP_08162010.1| GTP-binding protein Era [Lactobacillus reuteri MM4-1A] gi|148531003|gb|ABQ83002.1| GTP-binding protein Era [Lactobacillus reuteri DSM 20016] gi|183224708|dbj|BAG25225.1| GTP-binding protein [Lactobacillus reuteri JCM 1112] gi|227070086|gb|EEI08463.1| GTP-binding protein Era [Lactobacillus reuteri MM2-3] gi|324978332|gb|EGC15282.1| GTP-binding protein Era [Lactobacillus reuteri MM4-1A] Length = 301 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 60/180 (33%), Positives = 88/180 (48%), Gaps = 15/180 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKSTL N +V +K+A++ N TR+++ G +DT GI Sbjct: 11 VAIIGRPNVGKSTLLNYVVGQKVAIMSNVAQTTRNKIQGIYTSPEAQIIFIDTPGIHK-P 69 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + M A++E +LF++ + P D I L+K N PI +V NK+D + Sbjct: 70 STKLGDFMEKSAMSALDEVDAVLFVVSATEKRGPGDDFIIERLKKVNQPIFLVVNKID-Q 128 Query: 125 IAQRNFYEIY-----SLDFKEIVEISAEHDLGTSELHSVIFKIF---KQKYP-----NHP 171 I + EI +L FK IV ISA + L + I KI Q YP +HP Sbjct: 129 INPNDLPEIVDQYKDTLPFKGIVPISALQGNNVNNLINDIIKILPNGPQYYPADQVSDHP 188 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/178 (24%), Positives = 85/178 (47%), Gaps = 26/178 (14%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKSTL+N ++G + + + TR+ + + I DT G+ KPS Sbjct: 11 VAIIGRPNVGKSTLLNYVVGQKVAIMSNVAQTTRNKIQGIYTSPEAQIIFIDTPGIHKPS 70 Query: 266 -RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 ++ + +E K +M ++ + + ++ AT D I++ + + L +NK Sbjct: 71 TKLGDFME----KSAMSALDEVDAVLFVVSATEKRGPGDDFIIERLKKVNQPIFLVVNKI 126 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINT--------ISGRTGEGLDDLMVSVLEI 374 D ++ +LP+I D Y +T IS G +++L+ +++I Sbjct: 127 DQINP-------------NDLPEIVDQYKDTLPFKGIVPISALQGNNVNNLINDIIKI 171 >gi|251788699|ref|YP_003003420.1| GTP-binding protein Era [Dickeya zeae Ech1591] gi|247537320|gb|ACT05941.1| GTP-binding protein Era [Dickeya zeae Ech1591] Length = 301 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 51/176 (28%), Positives = 88/176 (50%), Gaps = 6/176 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N+L+ +K+++ P TR R+ G VDT G+ + Sbjct: 11 VAIVGRPNVGKSTLLNQLLGQKISITSRKPQTTRHRIMGIHTEGPYQAIYVDTPGLHIEE 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD-- 122 +I + MN +I + LI+F+++ T D + + LR++ P+++ NK+D Sbjct: 71 KRAINRLMNRAASSSIGDVELIIFVVEG-THWTDDDEMVVNKLREQKAPVLLAINKVDNV 129 Query: 123 ---TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 T++ ++F ++V ISAE + S++ K Q + P + I Sbjct: 130 ADKTKLLPHIQMLSEKMNFLDVVPISAEKGTHVDTIASIVRKHLPQAIHHFPEDYI 185 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 42/130 (32%), Positives = 64/130 (49%), Gaps = 5/130 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMR-KP 264 +A+VGRPNVGKSTL+N+LLG +T + TR + + DT G+ + Sbjct: 11 VAIVGRPNVGKSTLLNQLLGQKISITSRKPQTTRHRIMGIHTEGPYQAIYVDTPGLHIEE 70 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 R L + S+ V E I +++ T + D +V+ + V+LA+NK Sbjct: 71 KRAINRLMNRAASSSIGDV---ELIIFVVEGT-HWTDDDEMVVNKLREQKAPVLLAINKV 126 Query: 325 DMVSDKLNLL 334 D V+DK LL Sbjct: 127 DNVADKTKLL 136 >gi|145344534|ref|XP_001416786.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144577012|gb|ABO95079.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 489 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 61/251 (24%), Positives = 114/251 (45%), Gaps = 24/251 (9%) Query: 126 AQRNFYEIYSLDFKEIVEISA--EHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 AQR+ YE + KE++ +A E L E + + ++K + + ++ + Sbjct: 169 AQRSMYETWR---KELLTCAAYCEAALDFGEEEDIASDVVERKVRERVKALRDTLQKYLD 225 Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 +P + I + +R+A+VG PNVGKS+++N L G + + +G TRD + Sbjct: 226 APARG---------ELIRRGVRVALVGSPNVGKSSMLNALAGRDAAIVSPHAGTTRDVLE 276 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 +S + + + DTAG+R+ + +E+ + ++++ + + L DAT D Sbjct: 277 VSLELGGYKVIVSDTAGLRETE---DDVEKLGIARALERAEDADVVVALADATNDASNID 333 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 L+ ++ T +V NK D +SD Q I+N +S TG G Sbjct: 334 LKALNLSKKT---IVNVWNKSDALSDG----QTRELMEIENETAADGYETAVVSCLTGAG 386 Query: 364 LDDLMVSVLEI 374 LD + ++ I Sbjct: 387 LDGFISTLTRI 397 Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 34/56 (60%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 +A+VG+PNVGKS++ N L + A+V H G TRD L + G + DTAG+ Sbjct: 239 VALVGSPNVGKSSMLNALAGRDAAIVSPHAGTTRDVLEVSLELGGYKVIVSDTAGL 294 >gi|16765900|ref|NP_461515.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167992711|ref|ZP_02573807.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|194442527|ref|YP_002041843.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194451061|ref|YP_002046642.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197261778|ref|ZP_03161852.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|20141303|sp|Q56057|ERA_SALTY RecName: Full=GTPase Era gi|226741232|sp|B4TE14|ERA_SALHS RecName: Full=GTPase Era gi|226741233|sp|B4T1F7|ERA_SALNS RecName: Full=GTPase Era gi|16421127|gb|AAL21474.1| GTPase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|194401190|gb|ACF61412.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194409365|gb|ACF69584.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197240033|gb|EDY22653.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205329140|gb|EDZ15904.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|261247775|emb|CBG25603.1| GTP-binding protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267994706|gb|ACY89591.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159128|emb|CBW18642.1| GTP-binding protein era homolog [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312913569|dbj|BAJ37543.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321222715|gb|EFX47786.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323130911|gb|ADX18341.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332989507|gb|AEF08490.1| GTP-binding protein Era [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 301 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 53/185 (28%), Positives = 90/185 (48%), Gaps = 20/185 (10%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYG-------QAIINGVIFNIVDT 57 IAIVG PNVGKSTL N+L+ +K+++ TR R+ G QAI VDT Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGPYQAI-------YVDT 63 Query: 58 AGIADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIV 117 G+ + +I + MN +I + L++F+++ TP D + + LR P+I+ Sbjct: 64 PGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLRDGKAPVILA 122 Query: 118 SNKMDTRIAQRNF-----YEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPL 172 NK+D + + + ++F +IV ISAE + + ++ K + + P Sbjct: 123 VNKVDNVQEKVDLLPHLQFLASQMNFLDIVPISAETGMNVDTIAGIVRKHLPEAIHHFPE 182 Query: 173 EMIEN 177 + I + Sbjct: 183 DYITD 187 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 51/161 (31%), Positives = 83/161 (51%), Gaps = 9/161 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS-VSISWNWKNHPIEIFDTAGMRKP 264 IA+VGRPNVGKSTL+N+LLG +T ++ TR V I I + DT G+ Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGPYQAIYV-DTPGLHME 69 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 + ++ + K + S+ E I +++ T + D +++ + + V+LA+NK Sbjct: 70 EK--RAINRLMNKAASSSIGDVELVIFVVEGT-RWTPDDEMVLNKLRDGKAPVILAVNKV 126 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLD 365 D V +K++LL L+ A Q+ + I IS TG +D Sbjct: 127 DNVQEKVDLLPHLQFLA----SQMNFLDIVPISAETGMNVD 163 >gi|293380887|ref|ZP_06626923.1| tRNA modification GTPase TrmE [Lactobacillus crispatus 214-1] gi|290922560|gb|EFD99526.1| tRNA modification GTPase TrmE [Lactobacillus crispatus 214-1] Length = 461 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 54/177 (30%), Positives = 89/177 (50%), Gaps = 6/177 (3%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AIVG PNVGKS+L N L + A+V + G TRD L + GV ++DTAGI ++ Sbjct: 228 AIVGRPNVGKSSLLNYLTQSDKAIVTDVAGTTRDTLEEYVSVKGVPLELIDTAGIHHTED 287 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 + K ++++ A+ A L+L LID+ +T D A+ + K I++ NK D + Sbjct: 288 -KVEKIGVERSKKALERADLVLLLIDASQALTAEDQALIEATKDKK--RIVILNKSD--L 342 Query: 126 AQR-NFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 Q+ E+ L +++ S + L +I K+F N +++ N+R Sbjct: 343 GQKITTTEMEKLTGSDVISTSILKEQNLDALEELINKLFFAGIENSNDQIMVTNQRQ 399 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 71/123 (57%), Gaps = 5/123 (4%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 L A+VGRPNVGKS+L+N L ++ + +G TRD++ + K P+E+ DTAG+ Sbjct: 225 LATAIVGRPNVGKSSLLNYLTQSDKAIVTDVAGTTRDTLEEYVSVKGVPLELIDTAGIHH 284 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 + +E+ V++S +++ + ++L+DA+ +D ++++ + V+ LNK Sbjct: 285 TE---DKVEKIGVERSKKALERADLVLLLIDASQALTAEDQALIEATKDKKRIVI--LNK 339 Query: 324 WDM 326 D+ Sbjct: 340 SDL 342 >gi|167629165|ref|YP_001679664.1| tRNA modification GTPase trme [Heliobacterium modesticaldum Ice1] gi|205829157|sp|B0TAB6|MNME_HELMI RecName: Full=tRNA modification GTPase mnmE gi|167591905|gb|ABZ83653.1| tRNA modification GTPase trme [Heliobacterium modesticaldum Ice1] Length = 466 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 88/163 (53%), Gaps = 13/163 (7%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP 264 R +VGRPNVGKS+L+N LL R + G TRD++ + P+ I DTAG+R+ Sbjct: 224 RTVIVGRPNVGKSSLMNALLDEQRAIVTEIPGTTRDAIEEYIDLGGIPLRIVDTAGIRET 283 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 + E + V+K+ + + + +V+LD + +D ++ S+ G V+ +NK Sbjct: 284 EDVVERI---GVEKTREYLEKADLALVVLDGSDSLTAEDETLLLSL--AGRPAVVLVNKS 338 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDL 367 D+ +L+ K +++L +G++ I ++S + G GL +L Sbjct: 339 DLAVRRLD------EKRLRSL--VGEMPIISVSAKEGWGLKEL 373 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 49/161 (30%), Positives = 84/161 (52%), Gaps = 4/161 (2%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + IVG PNVGKS+L N L+ ++ A+V PG TRD + + G+ IVDTAGI + Sbjct: 223 WRTVIVGRPNVGKSSLMNALLDEQRAIVTEIPGTTRDAIEEYIDLGGIPLRIVDTAGIRE 282 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 ++ + + ++T + +A L L ++D +T D T L P +++ NK D Sbjct: 283 TEDV-VERIGVEKTREYLEKADLALVVLDGSDSLTAEDE--TLLLSLAGRPAVVLVNKSD 339 Query: 123 TRIAQRNFYEIYSLDFK-EIVEISAEHDLGTSELHSVIFKI 162 + + + + SL + I+ +SA+ G EL +I ++ Sbjct: 340 LAVRRLDEKRLRSLVGEMPIISVSAKEGWGLKELTELIRRM 380 >gi|319787579|ref|YP_004147054.1| GTP-binding protein Era [Pseudoxanthomonas suwonensis 11-1] gi|317466091|gb|ADV27823.1| GTP-binding protein Era [Pseudoxanthomonas suwonensis 11-1] Length = 307 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 43/123 (34%), Positives = 68/123 (55%), Gaps = 5/123 (4%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI--A 61 ++A+VG PNVGKSTL N LV K+++V N P TR RL G A + G +VDT G+ Sbjct: 14 SVAVVGRPNVGKSTLVNALVGAKVSIVSNRPQTTRHRLLGIATVPGGQMLLVDTPGLHRQ 73 Query: 62 DG--KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 +G K ++++ MN A+ + + ++++ HA L IP+++V N Sbjct: 74 EGRFKASAMSRVMNRTARGAVEDVDAAVLVVEAGRWDEEDSHAF-KVLSDAGIPVVLVVN 132 Query: 120 KMD 122 K+D Sbjct: 133 KVD 135 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 69/131 (52%), Gaps = 3/131 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGM-RKP 264 +AVVGRPNVGKSTL+N L+G + ++ TR + + + DT G+ R+ Sbjct: 15 VAVVGRPNVGKSTLVNALVGAKVSIVSNRPQTTRHRLLGIATVPGGQMLLVDTPGLHRQE 74 Query: 265 SRITESLEQKTVKKSMQ-SVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 R S + + ++ + +V + +++++A ++++D + + G VVL +NK Sbjct: 75 GRFKASAMSRVMNRTARGAVEDVDAAVLVVEAG-RWDEEDSHAFKVLSDAGIPVVLVVNK 133 Query: 324 WDMVSDKLNLL 334 D + DK LL Sbjct: 134 VDRLKDKSTLL 144 >gi|300115604|ref|YP_003762179.1| tRNA modification GTPase TrmE [Nitrosococcus watsonii C-113] gi|299541541|gb|ADJ29858.1| tRNA modification GTPase TrmE [Nitrosococcus watsonii C-113] Length = 459 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 40/118 (33%), Positives = 68/118 (57%), Gaps = 2/118 (1%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + + G PNVGKS+L NRL + A+V + PG TRD L I+G+ ++ DTAG+ D + Sbjct: 228 VVLAGRPNVGKSSLHNRLAGFEAAIVTDVPGTTRDLLREHVTIDGLPIHLSDTAGLHDSR 287 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + +I ++ +T + A +L + D ++G+T + AI L N+ ++ NK+D Sbjct: 288 D-TIEQEGMRRTREELTHADHVLLVADDQSGLTEVEQAILDEL-PDNVTYTLIFNKVD 343 Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 41/166 (24%), Positives = 80/166 (48%), Gaps = 16/166 (9%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + +++ + GRPNVGKS+L NRL G+ + G TRD + PI + DTA Sbjct: 222 LREGIKVVLAGRPNVGKSSLHNRLAGFEAAIVTDVPGTTRDLLREHVTIDGLPIHLSDTA 281 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+ SR +++EQ+ ++++ + + + +++ D + + I+D + + L Sbjct: 282 GLHD-SR--DTIEQEGMRRTREELTHADHVLLVADDQSGLTEVEQAILDELPDN-VTYTL 337 Query: 320 ALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLD 365 NK D+ + +D + A++ +S TG G+D Sbjct: 338 IFNKVDLSGASVGRWEDPQGIALR------------LSALTGAGMD 371 >gi|297588067|ref|ZP_06946711.1| tRNA modification GTPase TrmE [Finegoldia magna ATCC 53516] gi|297574756|gb|EFH93476.1| tRNA modification GTPase TrmE [Finegoldia magna ATCC 53516] Length = 452 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 52/162 (32%), Positives = 90/162 (55%), Gaps = 8/162 (4%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 I+G PNVGKS+L N L+K+ A+V + PG TRD + ++G+ I DTAGI D ++ Sbjct: 222 IIGKPNVGKSSLLNALLKENRAIVTDIPGTTRDVIEEYIDLDGISLKINDTAGIRDTED- 280 Query: 67 SIAKQMNDQTELA-INEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 I +++ + ++ I+++ LI+ + DS D I +R K I++ NK+D Sbjct: 281 -IVEKIGVEKSVSFISDSDLIIAIFDSSREFDDEDRKILDLIRDK--KSIVLLNKIDLD- 336 Query: 126 AQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKY 167 +F E +L+ E++ IS + + G +L + I ++F Y Sbjct: 337 GGFDFDE--NLEGIEVIRISIKQNEGIEDLENKIIEMFNDGY 376 Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 43/136 (31%), Positives = 74/136 (54%), Gaps = 5/136 (3%) Query: 191 SEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKN 250 SE + + I + ++G+PNVGKS+L+N LL NR + G TRD + + Sbjct: 205 SESANRGRIIRDGINTTIIGKPNVGKSSLLNALLKENRAIVTDIPGTTRDVIEEYIDLDG 264 Query: 251 HPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSV 310 ++I DTAG+R I E + V+KS+ + + I + D++ F+ +D +I+D + Sbjct: 265 ISLKINDTAGIRDTEDIVEKI---GVEKSVSFISDSDLIIAIFDSSREFDDEDRKILDLI 321 Query: 311 FNTGHAVVLALNKWDM 326 + ++VL LNK D+ Sbjct: 322 RDK-KSIVL-LNKIDL 335 >gi|296122241|ref|YP_003630019.1| small GTP-binding protein [Planctomyces limnophilus DSM 3776] gi|296014581|gb|ADG67820.1| small GTP-binding protein [Planctomyces limnophilus DSM 3776] Length = 411 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 83/155 (53%), Gaps = 7/155 (4%) Query: 176 ENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQS 235 ++ RNE ++ + + + +++ +++VG PN GKS+LINRLLGY R + Q Sbjct: 183 DDQSRNEAIRSVELSLKWWETGRRLTEGWVVSIVGLPNAGKSSLINRLLGYERSIVIDQP 242 Query: 236 GITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDA 295 G TRD V S + + DTAG+R+ + LE + ++K+M + + + ++DA Sbjct: 243 GTTRDIVRASTAIGGWLVHLADTAGVRESE---DPLEAEGIQKTMATAGQADLVMYVVDA 299 Query: 296 TIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDK 330 + + D+++ + VV+ LNK D+ D+ Sbjct: 300 SQSLQAADVQLSRQFRD----VVVLLNKCDLPMDR 330 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 68/120 (56%), Gaps = 5/120 (4%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + ++IVG PN GKS+L NRL+ + ++V + PG TRD + I G + ++ DTAG+ + Sbjct: 211 WVVSIVGLPNAGKSSLINRLLGYERSIVIDQPGTTRDIVRASTAIGGWLVHLADTAGVRE 270 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 ++ A+ + +T +A L+++++D+ + D ++ R ++++ NK D Sbjct: 271 SEDPLEAEGIQ-KTMATAGQADLVMYVVDASQSLQAADVQLSRQFRD----VVVLLNKCD 325 >gi|225386360|ref|ZP_03756124.1| hypothetical protein CLOSTASPAR_00104 [Clostridium asparagiforme DSM 15981] gi|225047542|gb|EEG57788.1| hypothetical protein CLOSTASPAR_00104 [Clostridium asparagiforme DSM 15981] Length = 470 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 76/132 (57%), Gaps = 9/132 (6%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 +++ +R ++G+PN GKS+L+N L+G +R + +G TRD++ + + + DTA Sbjct: 224 MTEGVRTVILGKPNAGKSSLMNVLIGEDRAIVTEIAGTTRDTLEEHIYLQGISLNVVDTA 283 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSV-FNTGH--- 315 G+R + E + V ++M++ R + I ++D + P ++ D I+D + N+G Sbjct: 284 GIRDTEDVVEKI---GVDRAMKAAREADLLIYVVDGSTPLDENDREIMDFIRSNSGEGGK 340 Query: 316 -AVVLALNKWDM 326 A+VL LNK D+ Sbjct: 341 KAIVL-LNKTDL 351 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 41/120 (34%), Positives = 63/120 (52%), Gaps = 5/120 (4%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 I+G PN GKS+L N L+ + A+V G TRD L + G+ N+VDTAGI D ++ Sbjct: 232 ILGKPNAGKSSLMNVLIGEDRAIVTEIAGTTRDTLEEHIYLQGISLNVVDTAGIRDTEDV 291 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLR----KKNIPIIIVSNKMD 122 + K D+ A EA L+++++D + D I F+R + I++ NK D Sbjct: 292 -VEKIGVDRAMKAAREADLLIYVVDGSTPLDENDREIMDFIRSNSGEGGKKAIVLLNKTD 350 >gi|54114479|gb|AAV29873.1| NT02FT1337 [synthetic construct] Length = 297 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 82/163 (50%), Gaps = 5/163 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 ++I+G PNVGKSTL N ++K K+++ P TR ++ G + F VDT GI + Sbjct: 7 LSIIGRPNVGKSTLLNNILKYKVSITSRKPQTTRHQITGIKTLGDTQFIYVDTPGIHIKE 66 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I K MN + +ILF+++ T + I L+ IPI +V NK+D + Sbjct: 67 PKAINKFMNKAATTMFKDVDVILFVVEM-GKWTELEDNIVEKLKHSEIPIFLVVNKVDKK 125 Query: 125 IAQRNFYEIYS----LDFKEIVEISAEHDLGTSELHSVIFKIF 163 + I S L F +++ +SA+ +EL S I K+ Sbjct: 126 KSLEAAMFIESIKEKLSFYDVIYVSAKQGHNINELESRIEKLL 168 Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust. Identities = 16/38 (42%), Positives = 26/38 (68%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 ++++GRPNVGKSTL+N +L Y +T + TR ++ Sbjct: 7 LSIIGRPNVGKSTLLNNILKYKVSITSRKPQTTRHQIT 44 >gi|322514173|ref|ZP_08067238.1| GTP-binding protein Era [Actinobacillus ureae ATCC 25976] gi|322119959|gb|EFX91961.1| GTP-binding protein Era [Actinobacillus ureae ATCC 25976] Length = 304 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 52/183 (28%), Positives = 87/183 (47%), Gaps = 20/183 (10%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N+++ +K+++ TR R+ G + VDT G+ + Sbjct: 15 IAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIHTEDQYQAIYVDTPGLHIEE 74 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD-- 122 +I + MN AI + LI+F+++ T D + + LR P+++ NK+D Sbjct: 75 KRAINRLMNRAASSAIGDVDLIIFVVEG-TKCTDDDEMVLNKLRAAKAPVVLAINKVDNI 133 Query: 123 ----------TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPL 172 T ++Q+ DF EI+ ISA+ L ++ K ++ + P Sbjct: 134 KEKDELLPHITELSQK-------FDFAEILPISAQSGKNVHILQKIVRKSLREGVHHFPE 186 Query: 173 EMI 175 E + Sbjct: 187 EYV 189 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 37/130 (28%), Positives = 65/130 (50%), Gaps = 5/130 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMR-KP 264 IA+VGRPNVGKSTL+N++LG +T ++ TR + + DT G+ + Sbjct: 15 IAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIHTEDQYQAIYVDTPGLHIEE 74 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 R L + ++ V + I +++ T + ++ +++ + VVLA+NK Sbjct: 75 KRAINRLMNRAASSAIGDV---DLIIFVVEGTKCTDDDEM-VLNKLRAAKAPVVLAINKV 130 Query: 325 DMVSDKLNLL 334 D + +K LL Sbjct: 131 DNIKEKDELL 140 >gi|242240202|ref|YP_002988383.1| GTP-binding protein Era [Dickeya dadantii Ech703] gi|242132259|gb|ACS86561.1| GTP-binding protein Era [Dickeya dadantii Ech703] Length = 301 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 55/184 (29%), Positives = 93/184 (50%), Gaps = 22/184 (11%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYG-------QAIINGVIFNIVDT 57 +AIVG PNVGKSTL N+L+ +K+++ P TR R+ G QAI VDT Sbjct: 11 VAIVGRPNVGKSTLLNQLLGQKISITSRKPQTTRHRIMGIHTEGPYQAI-------YVDT 63 Query: 58 AGIADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIV 117 G+ + +I + MN +I + LI+F+++ T D + + LR++ P+++ Sbjct: 64 PGLHIEEKRAINRLMNRAASSSIGDVELIVFVVEG-THWTDDDEMVVNKLREQKTPVVLA 122 Query: 118 SNKMDTRIAQRNFY----EIYS--LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHP 171 NK+D I ++ ++ S + F ++V ISAE + S++ K Q + P Sbjct: 123 INKVDN-ITDKSLLLPHIQMLSEKMKFLDVVPISAEKGTNVDAVASIVRKHLPQSLHHFP 181 Query: 172 LEMI 175 + I Sbjct: 182 EDYI 185 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 41/130 (31%), Positives = 64/130 (49%), Gaps = 5/130 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMR-KP 264 +A+VGRPNVGKSTL+N+LLG +T + TR + + DT G+ + Sbjct: 11 VAIVGRPNVGKSTLLNQLLGQKISITSRKPQTTRHRIMGIHTEGPYQAIYVDTPGLHIEE 70 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 R L + S+ V E + +++ T + D +V+ + VVLA+NK Sbjct: 71 KRAINRLMNRAASSSIGDV---ELIVFVVEGT-HWTDDDEMVVNKLREQKTPVVLAINKV 126 Query: 325 DMVSDKLNLL 334 D ++DK LL Sbjct: 127 DNITDKSLLL 136 >gi|171743043|ref|ZP_02918850.1| hypothetical protein BIFDEN_02168 [Bifidobacterium dentium ATCC 27678] gi|283455946|ref|YP_003360510.1| GTP-binding protein Era [Bifidobacterium dentium Bd1] gi|171278657|gb|EDT46318.1| hypothetical protein BIFDEN_02168 [Bifidobacterium dentium ATCC 27678] gi|283102580|gb|ADB09686.1| GTP-binding protein Era [Bifidobacterium dentium Bd1] Length = 333 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 62/203 (30%), Positives = 98/203 (48%), Gaps = 24/203 (11%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTL N L+ ++A+ + P TR + G + +VDT GI + Sbjct: 28 VAVVGRPNVGKSTLINALIGTQIAIASSRPETTRKAIRGILTTDNAQIVLVDTPGIHRPR 87 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLR------------KKNI 112 + +++ND + ++ + I FL+ I P D I S LR K + Sbjct: 88 TL-LGQRLNDVVDESLADVDAIAFLLPGDQEIGPGDKRILSRLRSEFAAKRDDGTFKWKV 146 Query: 113 PIIIVSNKMD--TRIAQRN-FYEIYSL-DFKEIVEISA-EHDLGTSELHSVIFKIFKQKY 167 P+I + K+D +R N EI DF +IV +SA +HD SE+ +V+ + + Sbjct: 147 PLIAIVTKIDELSREGLINKLIEINEFADFTDIVPVSALKHD-NLSEVRNVLVENMPEGP 205 Query: 168 PNHPLEMIENNKRNEESPKENIT 190 +P E I EE P++ I Sbjct: 206 QMYPAEQI-----TEERPEDTIA 223 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 41/78 (52%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +AVVGRPNVGKSTLIN L+G + S+ TR ++ N I + DT G+ +P Sbjct: 28 VAVVGRPNVGKSTLINALIGTQIAIASSRPETTRKAIRGILTTDNAQIVLVDTPGIHRPR 87 Query: 266 RITESLEQKTVKKSMQSV 283 + V +S+ V Sbjct: 88 TLLGQRLNDVVDESLADV 105 >gi|121598208|ref|YP_993769.1| GTP-binding protein Era [Burkholderia mallei SAVP1] gi|134277678|ref|ZP_01764393.1| GTP-binding protein Era [Burkholderia pseudomallei 305] gi|217420968|ref|ZP_03452473.1| GTP-binding protein Era [Burkholderia pseudomallei 576] gi|226199901|ref|ZP_03795451.1| GTP-binding protein Era [Burkholderia pseudomallei Pakistan 9] gi|238562761|ref|ZP_00439922.2| GTP-binding protein Era [Burkholderia mallei GB8 horse 4] gi|242316819|ref|ZP_04815835.1| GTP-binding protein Era [Burkholderia pseudomallei 1106b] gi|251767269|ref|ZP_02266587.2| GTP-binding protein Era [Burkholderia mallei PRL-20] gi|254195962|ref|ZP_04902388.1| GTP-binding protein Era [Burkholderia pseudomallei S13] gi|254199233|ref|ZP_04905599.1| GTP-binding protein Era [Burkholderia mallei FMH] gi|254205540|ref|ZP_04911892.1| GTP-binding protein Era [Burkholderia mallei JHU] gi|254296872|ref|ZP_04964325.1| GTP-binding protein Era [Burkholderia pseudomallei 406e] gi|121227018|gb|ABM49536.1| GTP-binding protein Era [Burkholderia mallei SAVP1] gi|134251328|gb|EBA51407.1| GTP-binding protein Era [Burkholderia pseudomallei 305] gi|147748829|gb|EDK55903.1| GTP-binding protein Era [Burkholderia mallei FMH] gi|147752983|gb|EDK60048.1| GTP-binding protein Era [Burkholderia mallei JHU] gi|157807734|gb|EDO84904.1| GTP-binding protein Era [Burkholderia pseudomallei 406e] gi|169652707|gb|EDS85400.1| GTP-binding protein Era [Burkholderia pseudomallei S13] gi|217396380|gb|EEC36397.1| GTP-binding protein Era [Burkholderia pseudomallei 576] gi|225927957|gb|EEH23994.1| GTP-binding protein Era [Burkholderia pseudomallei Pakistan 9] gi|238522002|gb|EEP85449.1| GTP-binding protein Era [Burkholderia mallei GB8 horse 4] gi|242140058|gb|EES26460.1| GTP-binding protein Era [Burkholderia pseudomallei 1106b] gi|243063330|gb|EES45516.1| GTP-binding protein Era [Burkholderia mallei PRL-20] Length = 311 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 47/150 (31%), Positives = 79/150 (52%), Gaps = 9/150 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N LV +K+++ TR R+ G ++ + VDT G Sbjct: 26 IAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRITGIHTLDDAQYIFVDTPGFQTRH 85 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + ++ + +N + ILF+I++ P D + + P ++V+NK+D R Sbjct: 86 STALNRSLNRAVTSTLTSVDAILFVIEA-GRFGPDDQKVLDLI-PPGTPTLLVANKLD-R 142 Query: 125 IAQRN-----FYEIYSL-DFKEIVEISAEH 148 ++ ++ F ++ L +F EIV +SA+H Sbjct: 143 VSDKDTLYPFFQKMGGLREFAEIVPLSAKH 172 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 40/128 (31%), Positives = 66/128 (51%), Gaps = 4/128 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA+VGRPNVGKSTL+N L+G +T ++ TR ++ + DT G + + Sbjct: 26 IAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRITGIHTLDDAQYIFVDTPGFQ--T 83 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 R + +L +++ +++ S T I+ + F D +++D + G +L NK D Sbjct: 84 RHSTAL-NRSLNRAVTSTLTSVDAILFVIEAGRFGPDDQKVLD-LIPPGTPTLLVANKLD 141 Query: 326 MVSDKLNL 333 VSDK L Sbjct: 142 RVSDKDTL 149 >gi|303257000|ref|ZP_07343014.1| GTP-binding protein Era [Burkholderiales bacterium 1_1_47] gi|302860491|gb|EFL83568.1| GTP-binding protein Era [Burkholderiales bacterium 1_1_47] Length = 303 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 49/187 (26%), Positives = 87/187 (46%), Gaps = 11/187 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A++G PNVGKSTL N LV +K+++ P TRDR+ G + + VDT G Sbjct: 18 VAVIGRPNVGKSTLINALVGEKVSITSKKPQTTRDRIMGVLTTDNAQYLFVDTPGFQTKH 77 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + +MN ++++ ++ +I++ G P D + + L K +I+ NK D Sbjct: 78 SSELLARMNQSVRSSLSDVDAVVMVIEA-TGWRPEDQVVLNLLSKDAKNVILAINKTDEV 136 Query: 125 IAQRNFY-----EIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNK 179 + F ++V +SAE L VI +KY ++ E++ Sbjct: 137 KESEAMLPLIKESMEKFPFADVVPVSAEKTRQLDVLLDVI-----RKYLPEGDKLYEDDI 191 Query: 180 RNEESPK 186 ++SP+ Sbjct: 192 YTDKSPR 198 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 40/131 (30%), Positives = 68/131 (51%), Gaps = 7/131 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGM--RK 263 +AV+GRPNVGKSTLIN L+G +T + TRD + N DT G + Sbjct: 18 VAVIGRPNVGKSTLINALVGEKVSITSKKPQTTRDRIMGVLTTDNAQYLFVDTPGFQTKH 77 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 S + + Q +V+ S+ V + +++++AT + +D +++ + V+LA+NK Sbjct: 78 SSELLARMNQ-SVRSSLSDV---DAVVMVIEAT-GWRPEDQVVLNLLSKDAKNVILAINK 132 Query: 324 WDMVSDKLNLL 334 D V + +L Sbjct: 133 TDEVKESEAML 143 >gi|154483917|ref|ZP_02026365.1| hypothetical protein EUBVEN_01623 [Eubacterium ventriosum ATCC 27560] gi|149735408|gb|EDM51294.1| hypothetical protein EUBVEN_01623 [Eubacterium ventriosum ATCC 27560] Length = 459 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 51/207 (24%), Positives = 104/207 (50%), Gaps = 20/207 (9%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + ++ ++G+PN GKS+L+N +LG +R + G TRD++ + N+ ++I DTA Sbjct: 219 MKEGIKTVILGKPNAGKSSLLNLMLGEDRAIVTDIEGTTRDTLEENINFNGLSLKIIDTA 278 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R + E + V K+ + + + I ++D + + D I+ + N A++L Sbjct: 279 GIRDTEDLVERI---GVNKAKEIAKEGDLIIYVVDGSRELDDNDREII-KLINDKQAIIL 334 Query: 320 ALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWK 379 +NK DM D + + DL+ + +++ S + GEG+D L + N + Sbjct: 335 -VNKSDM--DTVINIDDLKKDSNRDVI--------LFSVKNGEGMDQLEEEIR--NMFYS 381 Query: 380 TRITTS---YLNSWLQKTQLQNPPPTI 403 ++T + Y+ + K L+N ++ Sbjct: 382 GKVTYNDQVYITNARHKEALENALESL 408 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 50/185 (27%), Positives = 90/185 (48%), Gaps = 4/185 (2%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 I+G PN GKS+L N ++ + A+V + G TRD L NG+ I+DTAGI D ++ Sbjct: 227 ILGKPNAGKSSLLNLMLGEDRAIVTDIEGTTRDTLEENINFNGLSLKIIDTAGIRDTEDL 286 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 +N E+A E LI++++D + D I + K I++ + MDT I Sbjct: 287 VERIGVNKAKEIA-KEGDLIIYVVDGSRELDDNDREIIKLINDKQAIILVNKSDMDTVI- 344 Query: 127 QRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEESPK 186 N ++ ++++ S ++ G +L I +F + ++ N R++E+ + Sbjct: 345 --NIDDLKKDSNRDVILFSVKNGEGMDQLEEEIRNMFYSGKVTYNDQVYITNARHKEALE 402 Query: 187 ENITS 191 + S Sbjct: 403 NALES 407 >gi|220930844|ref|YP_002507753.1| tRNA modification GTPase TrmE [Clostridium cellulolyticum H10] gi|220001172|gb|ACL77773.1| tRNA modification GTPase TrmE [Clostridium cellulolyticum H10] Length = 460 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 51/165 (30%), Positives = 86/165 (52%), Gaps = 9/165 (5%) Query: 167 YPNHPLEMI--ENNKRNEESPKEN-ITSEGK-SSVKNISKPLRIAVVGRPNVGKSTLINR 222 YP H +E I EN N KE IT G K + + + I + G+PNVGKS+L+N+ Sbjct: 181 YPEHDIEEITGENVLENLIKIKEELITLAGTFERGKILREGIDIVIAGKPNVGKSSLLNQ 240 Query: 223 LLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQS 282 L G + + G TRD + N K P +I DTAG+R + E++ V ++ ++ Sbjct: 241 LSGSTKAIVTDIPGTTRDIIEEYVNIKGIPAKIIDTAGIRSTEDVVETI---GVNRAYEA 297 Query: 283 VRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMV 327 + + + I +L A ++D++I+ + N ++ +NK D+V Sbjct: 298 IESADLIIAVLSADTGVTEEDIQILKMIKNKKSLIL--INKTDLV 340 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 57/180 (31%), Positives = 88/180 (48%), Gaps = 8/180 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 I I G PNVGKS+L N+L A+V + PG TRD + I G+ I+DTAGI + Sbjct: 224 IVIAGKPNVGKSSLLNQLSGSTKAIVTDIPGTTRDIIEEYVNIKGIPAKIIDTAGIRSTE 283 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +N E AI A LI+ ++ + G+T D I ++ K I+I NK D Sbjct: 284 DVVETIGVNRAYE-AIESADLIIAVLSADTGVTEEDIQILKMIKNKKSLILI--NKTD-- 338 Query: 125 IAQRNFYEIYSLDFKE---IVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 + ++N E ++E S D+G EL + I +F + + E++ N R+ Sbjct: 339 LVEKNSISKIKQQLSECDIVLEASVIKDVGIEELETAISGLFIKGDISSNNEVLLTNARH 398 >gi|317491019|ref|ZP_07949455.1| GTP-binding protein Era [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920566|gb|EFV41889.1| GTP-binding protein Era [Enterobacteriaceae bacterium 9_2_54FAA] Length = 301 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 56/183 (30%), Positives = 90/183 (49%), Gaps = 20/183 (10%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYG-------QAIINGVIFNIVDT 57 IAIVG PNVGKSTL N+L+ +K+++ P TR R+ G QAI VDT Sbjct: 11 IAIVGRPNVGKSTLLNQLLGQKISITSRKPQTTRHRIMGIHTEGPYQAI-------YVDT 63 Query: 58 AGIADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIV 117 G+ + +I + MN +I + L++F+++ T D + + LR P+I+ Sbjct: 64 PGLHIEEKRAINRLMNRAASSSIGDVELVIFVVEG-THWTADDEMVVNKLRDLKAPVILA 122 Query: 118 SNKMDT---RIAQRNFYEIYS--LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPL 172 NK+D + A + S ++F ++V ISAE + S++ K + + P Sbjct: 123 INKVDNVQDKAALLPHIQFLSEQMNFMDVVPISAEKGTNVDTIASIVRKKLPEAIHHFPE 182 Query: 173 EMI 175 E I Sbjct: 183 EYI 185 Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 43/130 (33%), Positives = 64/130 (49%), Gaps = 5/130 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMR-KP 264 IA+VGRPNVGKSTL+N+LLG +T + TR + + DT G+ + Sbjct: 11 IAIVGRPNVGKSTLLNQLLGQKISITSRKPQTTRHRIMGIHTEGPYQAIYVDTPGLHIEE 70 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 R L + S+ V E I +++ T + D +V+ + + V+LA+NK Sbjct: 71 KRAINRLMNRAASSSIGDV---ELVIFVVEGT-HWTADDEMVVNKLRDLKAPVILAINKV 126 Query: 325 DMVSDKLNLL 334 D V DK LL Sbjct: 127 DNVQDKAALL 136 >gi|296157619|ref|ZP_06840454.1| tRNA modification GTPase TrmE [Burkholderia sp. Ch1-1] gi|295892391|gb|EFG72174.1| tRNA modification GTPase TrmE [Burkholderia sp. Ch1-1] Length = 464 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 84/164 (51%), Gaps = 12/164 (7%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 ++ + G PNVGKS+L N L ++A+V G TRD++ I G+ +++DTAG+ D Sbjct: 228 SVVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQIEGIPLHVIDTAGLRDT 287 Query: 64 KN----CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 ++ IA+ N+ I A ++L L+D++ G+T D AI +P++ V N Sbjct: 288 EDEVEKIGIARTWNE-----IERADVVLHLLDARTGMTVEDEAIAGRF-PAGVPVVRVLN 341 Query: 120 KMD-TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKI 162 K D T +A D E V +SA+ G + L + +I Sbjct: 342 KTDLTGLAPATRALDADPDLSE-VRLSAKQGDGVALLREELLRI 384 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 65/282 (23%), Positives = 119/282 (42%), Gaps = 35/282 (12%) Query: 114 IIIVSNKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLE 173 +I S + R A R+ +S D +VE + ++ + + P E Sbjct: 142 LIEASTEAAARSAGRSLDGAFSRDIHALVE------------DVITLRMLVEATLDFPEE 189 Query: 174 MIENNKRNEESPK--------ENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLG 225 I+ + + K ++ SE + + + L + + G+PNVGKS+L+N L G Sbjct: 190 EIDFLEAADARGKLARIRERLAHVLSEARQGAL-LREGLSVVLAGQPNVGKSSLLNALAG 248 Query: 226 YNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRT 285 + +G TRD V+ + + P+ + DTAG+R + +E+ + ++ + Sbjct: 249 AELAIVTPIAGTTRDKVAQTIQIEGIPLHVIDTAGLRDTE---DEVEKIGIARTWNEIER 305 Query: 286 CETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNL 345 + + LLDA +D I F G VV LNK D+ T+A+ Sbjct: 306 ADVVLHLLDARTGMTVEDEAIAGR-FPAGVPVVRVLNKTDLTGLAPA------TRALDAD 358 Query: 346 PQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYL 387 P + ++ +S + G+G+ L +L I W+ + YL Sbjct: 359 PDLSEVR---LSAKQGDGVALLREELLRIAG-WQAGAESVYL 396 >gi|67459606|ref|YP_247230.1| tRNA modification GTPase TrmE [Rickettsia felis URRWXCal2] gi|75535997|sp|Q4UK70|MNME_RICFE RecName: Full=tRNA modification GTPase mnmE gi|67005139|gb|AAY62065.1| tRNA modification GTPase TrmE [Rickettsia felis URRWXCal2] Length = 480 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 40/129 (31%), Positives = 77/129 (59%), Gaps = 7/129 (5%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 ++ L++A++G PNVGKS+L+N L+ + + + +G TRD + + +PI + DTA Sbjct: 247 LNSGLKLAIIGPPNVGKSSLLNFLMQRDIAIVSNIAGTTRDIIEGHLDIGGYPIILQDTA 306 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFN-TGHAVV 318 G+R+ S ++ +EQ+ +K+++ S +T + I++ DA EK D I + + N + Sbjct: 307 GIREES--SDIIEQEGIKRAIHSAKTADIKIIMFDA----EKLDSSINEDIMNLINENTI 360 Query: 319 LALNKWDMV 327 +NK D++ Sbjct: 361 TIINKIDLI 369 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 64/118 (54%), Gaps = 3/118 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKS+L N L+++ +A+V N G TRD + G I G + DTAGI + Sbjct: 253 LAIIGPPNVGKSSLLNFLMQRDIAIVSNIAGTTRDIIEGHLDIGGYPIILQDTAGIREES 312 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + I ++ + + A + + + D++ + + I + + + I II NK+D Sbjct: 313 SDIIEQEGIKRAIHSAKTADIKIIMFDAEKLDSSINEDIMNLINENTITII---NKID 367 >gi|296328716|ref|ZP_06871231.1| GTP-binding protein Era [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296154153|gb|EFG94956.1| GTP-binding protein Era [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 296 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 40/126 (31%), Positives = 74/126 (58%), Gaps = 4/126 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IAVVGRPNVGKSTLIN+L+ + ++G TRD++ N+K++ DT G+ KP Sbjct: 6 IAVVGRPNVGKSTLINKLVSEKVAIVSDKAGTTRDNIKGILNFKDNQYIFIDTPGIHKPQ 65 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSV-FNTGHAVVLALNKW 324 + L + +++ ++ + + L+DA+ P D+ +++ + N+ +L +NK Sbjct: 66 HL---LGEYMTNIAVKILKDVDIILFLIDASKPIGTGDMFVMNRINENSKKPRILLVNKV 122 Query: 325 DMVSDK 330 D+++D+ Sbjct: 123 DLITDE 128 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 41/119 (34%), Positives = 67/119 (56%), Gaps = 2/119 (1%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTL N+LV +K+A+V + G TRD + G + +DT GI + Sbjct: 6 IAVVGRPNVGKSTLINKLVSEKVAIVSDKAGTTRDNIKGILNFKDNQYIFIDTPGIHKPQ 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKN-IPIIIVSNKMD 122 + + + M + + + +ILFLID+ I D + + + + + P I++ NK+D Sbjct: 66 HL-LGEYMTNIAVKILKDVDIILFLIDASKPIGTGDMFVMNRINENSKKPRILLVNKVD 123 >gi|289450403|ref|YP_003475559.1| tRNA modification GTPase TrmE [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184950|gb|ADC91375.1| tRNA modification GTPase TrmE [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 484 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 61/222 (27%), Positives = 115/222 (51%), Gaps = 24/222 (10%) Query: 166 KYPNHPLEMI--ENNKRNEESPKENITS--EGKSSVKNISKPLRIAVVGRPNVGKSTLIN 221 +YP H +I E+ +++ E+ E + + + I L + + GRPN GKSTL+N Sbjct: 193 QYPEHEESVISPESLRKDIETATEKLIALVATYHDGRVIRDGLCVLLAGRPNSGKSTLLN 252 Query: 222 RLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQ 281 L GY+R + G TRD++ N H I + DTAG+R T+++E+ V +S++ Sbjct: 253 TLSGYDRAIVTDIPGTTRDTIEERINLSGHAITVIDTAGLRA---TTDTVERLGVDRSLK 309 Query: 282 SVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLAL-NKWDMV--SDKLNLLQDLR 338 +++ + + L + +DL + + +G+A +L L +K D++ SD L++LR Sbjct: 310 AMQKADLILWLFPSDSKSLSEDLAELKNF--SGNAPILPLISKADLLNPSDLPRYLENLR 367 Query: 339 TKA------IKNLPQIGDIYINTISGRTGEGLDDLMVSVLEI 374 +A ++ LP I +SG G++ L+ ++++ Sbjct: 368 IEATHAAIGLEFLPPIA------VSGLDKSGIEQLIKQIIKL 403 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 64/119 (53%), Gaps = 4/119 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + + G PN GKSTL N L A+V + PG TRD + + ++G ++DTAG+ Sbjct: 237 VLLAGRPNSGKSTLLNTLSGYDRAIVTDIPGTTRDTIEERINLSGHAITVIDTAGLRATT 296 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHA-ITSFLRKKNIPIIIVSNKMD 122 + ++ + D++ A+ +A LIL+L S + D A + +F N PI+ + +K D Sbjct: 297 D-TVERLGVDRSLKAMQKADLILWLFPSDSKSLSEDLAELKNF--SGNAPILPLISKAD 352 >gi|254503598|ref|ZP_05115749.1| GTP-binding protein Era [Labrenzia alexandrii DFL-11] gi|222439669|gb|EEE46348.1| GTP-binding protein Era [Labrenzia alexandrii DFL-11] Length = 337 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 55/175 (31%), Positives = 86/175 (49%), Gaps = 17/175 (9%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A++GAPN GKSTL N+LV K+++V + TR + G A+ +DT GI K Sbjct: 48 VALIGAPNAGKSTLINQLVGTKVSIVTHKVQTTRSIVRGVAMHGTAQLVFIDTPGIFKPK 107 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 + + M D +A +I LID++ GI I L+ ++ P +++ NK D Sbjct: 108 R-RLDRAMVDTAWGGARDADVIALLIDARKGIDEEVEQILKRLKGQSAPKVLILNKTDVA 166 Query: 124 ------RIAQR-NFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHP 171 ++AQ+ N Y L+F+E +SA GT + I F K P+ P Sbjct: 167 NREKLLKLAQKANEY----LEFEETFMVSALTGDGTQQ----ILDYFASKMPDGP 213 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 46/163 (28%), Positives = 80/163 (49%), Gaps = 8/163 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++G PN GKSTLIN+L+G + + TR V + DT G+ KP Sbjct: 48 VALIGAPNAGKSTLINQLVGTKVSIVTHKVQTTRSIVRGVAMHGTAQLVFIDTPGIFKPK 107 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 R L++ V + R + +L+DA +++ +I+ + VL LNK D Sbjct: 108 R---RLDRAMVDTAWGGARDADVIALLIDARKGIDEEVEQILKRLKGQSAPKVLILNKTD 164 Query: 326 MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLM 368 V+++ LL+ L KA + L + + ++ +S TG+G ++ Sbjct: 165 -VANREKLLK-LAQKANEYL-EFEETFM--VSALTGDGTQQIL 202 >gi|20807454|ref|NP_622625.1| GTPase [Thermoanaerobacter tengcongensis MB4] gi|25008432|sp|Q8RB50|ERA_THETN RecName: Full=GTPase Era gi|20515979|gb|AAM24229.1| GTPases [Thermoanaerobacter tengcongensis MB4] Length = 298 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 50/153 (32%), Positives = 83/153 (54%), Gaps = 7/153 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A++G NVGKSTL N ++K+K+A+ P TR+ + G VDT GI K Sbjct: 8 VALIGRTNVGKSTLLNAILKEKVAITSPKPQTTRNTIRGILTTEDYQIIFVDTPGIHKPK 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +++ M + + + + LIL++++ I P D I L++ + P+I+V NK+D Sbjct: 68 S-KLSEFMIEVAKRTLKDVDLILYMVEPDTSIGPGDRYILDNLKEVDTPVILVVNKIDLV 126 Query: 125 IAQRNFYEI----YSLDFKEIVEISAEHDLGTS 153 A+R I +FK++V ISA LGT+ Sbjct: 127 PAERVEEAIKVFKSEYNFKDVVAISA--SLGTN 157 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 32/123 (26%), Positives = 68/123 (55%), Gaps = 5/123 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP- 264 +A++GR NVGKSTL+N +L +T + TR+++ +++ I DT G+ KP Sbjct: 8 VALIGRTNVGKSTLLNAILKEKVAITSPKPQTTRNTIRGILTTEDYQIIFVDTPGIHKPK 67 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 S+++E + ++ + ++++ + + +++ D I+D++ V+L +NK Sbjct: 68 SKLSEFM----IEVAKRTLKDVDLILYMVEPDTSIGPGDRYILDNLKEVDTPVILVVNKI 123 Query: 325 DMV 327 D+V Sbjct: 124 DLV 126 >gi|312130569|ref|YP_003997909.1| tRNA modification gtpase trme [Leadbetterella byssophila DSM 17132] gi|311907115|gb|ADQ17556.1| tRNA modification GTPase trmE [Leadbetterella byssophila DSM 17132] Length = 444 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 38/93 (40%), Positives = 60/93 (64%), Gaps = 1/93 (1%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + +AI+GAPN GKSTL N L+ + A+V + G TRD + II+G+ F +DTAGI + Sbjct: 219 FPVAIIGAPNAGKSTLLNALLNEDRAIVTDIAGTTRDIIEDTLIIDGIKFRFIDTAGIRE 278 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAG 95 ++ A + ++++ A+ +A L+LFL DS G Sbjct: 279 TEDLIEAMGI-ERSKKALQDARLVLFLYDSTQG 310 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/107 (32%), Positives = 57/107 (53%), Gaps = 4/107 (3%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 I + +A++G PN GKSTL+N LL +R + +G TRD + + DTA Sbjct: 215 IKEGFPVAIIGAPNAGKSTLLNALLNEDRAIVTDIAGTTRDIIEDTLIIDGIKFRFIDTA 274 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE-KQDLR 305 G+R+ + E++ + KK++Q R + L D+T +E QDL+ Sbjct: 275 GIRETEDLIEAMGIERSKKALQDARLV---LFLYDSTQGYEFLQDLQ 318 >gi|302342153|ref|YP_003806682.1| GTP-binding protein Era [Desulfarculus baarsii DSM 2075] gi|301638766|gb|ADK84088.1| GTP-binding protein Era [Desulfarculus baarsii DSM 2075] Length = 296 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 41/129 (31%), Positives = 68/129 (52%), Gaps = 3/129 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VG PN GKST +N +LG+ +T + TR + N + I DT G+ KP Sbjct: 6 VAIVGPPNAGKSTFLNHVLGFKLAITSDKPQTTRHRLLGVCNREESQIVFLDTPGLHKPM 65 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 R +L + V+ +M +++ E + +++A+ + R+ + VV+ALNK D Sbjct: 66 R---ALNKLMVRTAMAALQDVEAVLFMVEASAKGLAEGQRVAGMLAEAKKPVVVALNKID 122 Query: 326 MVSDKLNLL 334 +V DK LL Sbjct: 123 LVRDKAALL 131 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 1/118 (0%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PN GKST N ++ K+A+ + P TR RL G +DT G+ Sbjct: 6 VAIVGPPNAGKSTFLNHVLGFKLAITSDKPQTTRHRLLGVCNREESQIVFLDTPGLHKPM 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 ++ K M A+ + +LF++++ A + L + P+++ NK+D Sbjct: 66 R-ALNKLMVRTAMAALQDVEAVLFMVEASAKGLAEGQRVAGMLAEAKKPVVVALNKID 122 >gi|262341101|ref|YP_003283956.1| tRNA modification GTPase TrmE [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272438|gb|ACY40346.1| tRNA modification GTPase TrmE [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 464 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 57/172 (33%), Positives = 94/172 (54%), Gaps = 14/172 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + I+G PNVGKST FN+++++ ++V + G TRD + G+ I+NG++F+ DTAGI K Sbjct: 226 VVIIGEPNVGKSTFFNQVIQEDRSIVSHIKGTTRDCIEGKIILNGILFHFYDTAGIR--K 283 Query: 65 NCSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRK--KNIP---IIIVS 118 + M ++T ++E+ +IL++ DS + I ++K K P I ++ Sbjct: 284 TIDPIEVMGVEKTMKKMDESQMILYIFDSSSSEKKKQKRIVREIQKIQKKYPLKDIFAIA 343 Query: 119 NKMDTRIAQRNFYEIYSLDFKEIVEISA--EHDLGT--SELHSVIFKIFKQK 166 NK D Q +FY I S EISA H++ L ++ F+ FK+K Sbjct: 344 NKSDLSYFQ-DFYNIKS-KVSYFFEISARNRHEVKKVLDTLSNLFFERFKEK 393 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 31/112 (27%), Positives = 58/112 (51%), Gaps = 3/112 (2%) Query: 199 NISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDT 258 +I K + + ++G PNVGKST N+++ +R + G TRD + +DT Sbjct: 219 SIKKGVYVVIIGEPNVGKSTFFNQVIQEDRSIVSHIKGTTRDCIEGKIILNGILFHFYDT 278 Query: 259 AGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSV 310 AG+RK + +E V+K+M+ + + + + D++ +K+ RIV + Sbjct: 279 AGIRKT---IDPIEVMGVEKTMKKMDESQMILYIFDSSSSEKKKQKRIVREI 327 >gi|319651594|ref|ZP_08005721.1| era protein [Bacillus sp. 2_A_57_CT2] gi|317396661|gb|EFV77372.1| era protein [Bacillus sp. 2_A_57_CT2] Length = 306 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 47/149 (31%), Positives = 80/149 (53%), Gaps = 11/149 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 I+I+G PNVGKST NR++ +K+A++ + P TR+++ G N F +DT GI K Sbjct: 15 ISIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKVQGVLTTNDAQFIFIDTPGIHKPK 74 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 + + M + + E +ILF+++++ G + I + PI +V NK+D Sbjct: 75 H-KLGDFMMKVAQNTLKEVDVILFMVNAQEGFGRGEEFILEKFQSVRTPIFLVINKIDQV 133 Query: 124 ------RIAQRNFYEIYSLDFKEIVEISA 146 +I + ++ E Y +F EI+ ISA Sbjct: 134 HPDELLKIIE-SYKEKY--EFSEIIPISA 159 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 31/122 (25%), Positives = 59/122 (48%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 I+++GRPNVGKST +NR++G + + TR+ V + DT G+ KP Sbjct: 15 ISIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKVQGVLTTNDAQFIFIDTPGIHKPK 74 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L +K + +++ + + +++A F + + I++ + + L +NK D Sbjct: 75 H---KLGDFMMKVAQNTLKEVDVILFMVNAQEGFGRGEEFILEKFQSVRTPIFLVINKID 131 Query: 326 MV 327 V Sbjct: 132 QV 133 >gi|293394830|ref|ZP_06639120.1| GTP-binding protein Era [Serratia odorifera DSM 4582] gi|291422581|gb|EFE95820.1| GTP-binding protein Era [Serratia odorifera DSM 4582] Length = 302 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 52/184 (28%), Positives = 91/184 (49%), Gaps = 22/184 (11%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYG-------QAIINGVIFNIVDT 57 IAIVG PNVGKSTL N+L+ +K+++ P TR R+ G QAI VDT Sbjct: 11 IAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGIHTEGPYQAI-------YVDT 63 Query: 58 AGIADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIV 117 G+ + +I + MN +I + L++F+++ T D + + LR P+++ Sbjct: 64 PGLHIEEKRAINRLMNRAASSSIGDVELVIFVVEG-TNWTADDEMVVNKLRSLKCPVLLA 122 Query: 118 SNKMDTRIAQRN------FYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHP 171 NK+D +A + + ++F ++V ISAE + + ++ K+ + + P Sbjct: 123 INKVDN-VADKGKLLPHIAFLSQQMNFLDVVPISAEKGMNVDTIAGIVRKLLPEAEHHFP 181 Query: 172 LEMI 175 + I Sbjct: 182 EDYI 185 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 43/130 (33%), Positives = 65/130 (50%), Gaps = 5/130 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMR-KP 264 IA+VGRPNVGKSTL+N+LLG +T + TR + + DT G+ + Sbjct: 11 IAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGIHTEGPYQAIYVDTPGLHIEE 70 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 R L + S+ V E I +++ T + D +V+ + + V+LA+NK Sbjct: 71 KRAINRLMNRAASSSIGDV---ELVIFVVEGT-NWTADDEMVVNKLRSLKCPVLLAINKV 126 Query: 325 DMVSDKLNLL 334 D V+DK LL Sbjct: 127 DNVADKGKLL 136 >gi|256026685|ref|ZP_05440519.1| GTP-binding protein Era [Fusobacterium sp. D11] gi|289764681|ref|ZP_06524059.1| GTP binding protein [Fusobacterium sp. D11] gi|289716236|gb|EFD80248.1| GTP binding protein [Fusobacterium sp. D11] Length = 298 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 41/126 (32%), Positives = 70/126 (55%), Gaps = 5/126 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IAVVGRPNVGKSTLIN+L+ + ++G TRD++ N+K++ DT G+ KP Sbjct: 6 IAVVGRPNVGKSTLINKLVSEKVAIVSDKAGTTRDNIKGILNFKDNQYIFIDTPGIHKPQ 65 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHA--VVLALNK 323 + L + ++ ++ + + L+DA+ P D+ ++D + +L +NK Sbjct: 66 HL---LGEYMTNIAVNILKDVDIILFLIDASKPIGTGDMFVMDRINENAKKKPKILLVNK 122 Query: 324 WDMVSD 329 D++SD Sbjct: 123 VDLISD 128 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 45/123 (36%), Positives = 69/123 (56%), Gaps = 9/123 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTL N+LV +K+A+V + G TRD + G + +DT GI + Sbjct: 6 IAVVGRPNVGKSTLINKLVSEKVAIVSDKAGTTRDNIKGILNFKDNQYIFIDTPGIHKPQ 65 Query: 65 NCSIAKQMNDQTELAIN---EAHLILFLIDSKAGITPYDHAITSFLRK--KNIPIIIVSN 119 + + + M T +A+N + +ILFLID+ I D + + + K P I++ N Sbjct: 66 HL-LGEYM---TNIAVNILKDVDIILFLIDASKPIGTGDMFVMDRINENAKKKPKILLVN 121 Query: 120 KMD 122 K+D Sbjct: 122 KVD 124 >gi|332705667|ref|ZP_08425743.1| tRNA modification GTPase trmE [Lyngbya majuscula 3L] gi|332355459|gb|EGJ34923.1| tRNA modification GTPase trmE [Lyngbya majuscula 3L] Length = 459 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 45/156 (28%), Positives = 81/156 (51%), Gaps = 3/156 (1%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + I+G PNVGKS+L N + A+V + PG TRD + Q ++ G+ ++DTAGI + Sbjct: 224 VVILGRPNVGKSSLLNAWSRCDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETA 283 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + K +++ A A L+L +I++ G + D I ++++ P+I+V NK D Sbjct: 284 D-QVEKIGVERSRSAAMAADLVLLVIEATTGWSAGDQEIYQQVQER--PVILVINKTDLA 340 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 + Y + +V+ +A ++ G L I Sbjct: 341 SDKAESTLSYPNTIERVVKTAAAYNQGIDALEKAIL 376 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 39/127 (30%), Positives = 69/127 (54%), Gaps = 5/127 (3%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 L++ ++GRPNVGKS+L+N +R + G TRD V P+++ DTAG+R+ Sbjct: 222 LKVVILGRPNVGKSSLLNAWSRCDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRE 281 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 + + +E+ V++S + + +++++AT + D I V V+L +NK Sbjct: 282 TA---DQVEKIGVERSRSAAMAADLVLLVIEATTGWSAGDQEIYQQVQE--RPVILVINK 336 Query: 324 WDMVSDK 330 D+ SDK Sbjct: 337 TDLASDK 343 >gi|85712959|ref|ZP_01043998.1| GTPase Era [Idiomarina baltica OS145] gi|85693197|gb|EAQ31156.1| GTPase Era [Idiomarina baltica OS145] Length = 315 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 51/177 (28%), Positives = 88/177 (49%), Gaps = 8/177 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST+ NR++ +K+++ + P TR R+ G VDT G+ + Sbjct: 26 VAIVGRPNVGKSTMLNRILGQKVSITSSKPQTTRHRILGVDTEGDYQTVYVDTPGMHLEE 85 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN A+ + LILF++++ D + L+K PI++V NK+D + Sbjct: 86 PRAINRVMNQTASSALKDVDLILFVVENTR-WNDDDVMVLEKLKKTETPIVLVVNKVD-Q 143 Query: 125 IAQRN------FYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 I +N + L KEI+ +SA+ L ++ + Y +P + + Sbjct: 144 IKDKNKLLPHLQWLSQQLSVKEIIPVSAKTGDNLEPLRDIVKGFLQSGYHFYPADYV 200 Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 48/164 (29%), Positives = 81/164 (49%), Gaps = 11/164 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGM--RK 263 +A+VGRPNVGKST++NR+LG +T S+ TR + ++ DT GM + Sbjct: 26 VAIVGRPNVGKSTMLNRILGQKVSITSSKPQTTRHRILGVDTEGDYQTVYVDTPGMHLEE 85 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 P I + Q T +++ V I+ + + D+ +++ + T +VL +NK Sbjct: 86 PRAINRVMNQ-TASSALKDV----DLILFVVENTRWNDDDVMVLEKLKKTETPIVLVVNK 140 Query: 324 WDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDL 367 D + DK LL L+ + Q+ I +S +TG+ L+ L Sbjct: 141 VDQIKDKNKLLPHLQWLS----QQLSVKEIIPVSAKTGDNLEPL 180 >gi|291544277|emb|CBL17386.1| GTP-binding protein Era [Ruminococcus sp. 18P13] Length = 297 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 52/179 (29%), Positives = 82/179 (45%), Gaps = 6/179 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + I G N GKS+L N LV +K+A V N P TR R+ G I +DT G+ K Sbjct: 7 VTIAGRTNAGKSSLLNALVGEKIASVSNKPQTTRTRITGIKTIGDTQLVFMDTPGLHKPK 66 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD-- 122 N +N TE ++ + L+LF++D +TP + A+ +++ P+I++ NK+D Sbjct: 67 NKLSEHMLNTVTE-SVVDIDLLLFMMDCTRQMTPQEEAMLLDCKRRKRPVIVILNKIDLL 125 Query: 123 ---TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 TR+A D I+ IS G + + K+ P EM + Sbjct: 126 EDKTRLAGMMVGIQSRFDPASIIPISVTEQDGVDLVEQEVLSHAKESPHFFPDEMFTDQ 184 Score = 43.1 bits (100), Expect = 0.086, Method: Compositional matrix adjust. Identities = 31/128 (24%), Positives = 57/128 (44%), Gaps = 3/128 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 + + GR N GKS+L+N L+G ++ TR ++ + + DT G+ KP Sbjct: 7 VTIAGRTNAGKSSLLNALVGEKIASVSNKPQTTRTRITGIKTIGDTQLVFMDTPGLHKPK 66 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + + +SV + + ++D T Q+ ++ V++ LNK D Sbjct: 67 N---KLSEHMLNTVTESVVDIDLLLFMMDCTRQMTPQEEAMLLDCKRRKRPVIVILNKID 123 Query: 326 MVSDKLNL 333 ++ DK L Sbjct: 124 LLEDKTRL 131 >gi|258509933|ref|YP_003172684.1| tRNA modification GTPase TrmE [Lactobacillus rhamnosus GG] gi|257149860|emb|CAR88833.1| tRNA modification GTPase MnmE [Lactobacillus rhamnosus GG] gi|259651193|dbj|BAI43355.1| tRNA modification GTPase [Lactobacillus rhamnosus GG] Length = 462 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 44/143 (30%), Positives = 81/143 (56%), Gaps = 7/143 (4%) Query: 195 SSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIE 254 S K + + L A+VGRPNVGKS+L+N +L ++ + +G TRD + N + P++ Sbjct: 216 SQGKVLREGLATAIVGRPNVGKSSLLNHMLHEDKAIVTDVAGTTRDVLEEYVNVRGVPLK 275 Query: 255 IFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTG 314 + DTAG+ T+ +E+ V++S Q++ + +++LD + P +D +++ + + Sbjct: 276 LVDTAGIHDT---TDKVEKIGVERSRQAITQADLILLVLDQSEPLTTEDKQLLAATADKK 332 Query: 315 HAVVLALNKWDMVS--DKLNLLQ 335 +V LNK D+ + D LLQ Sbjct: 333 RIIV--LNKQDLPARLDTAALLQ 353 Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 57/178 (32%), Positives = 87/178 (48%), Gaps = 7/178 (3%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AIVG PNVGKS+L N ++ + A+V + G TRD L + GV +VDTAGI D + Sbjct: 228 AIVGRPNVGKSSLLNHMLHEDKAIVTDVAGTTRDVLEEYVNVRGVPLKLVDTAGIHDTTD 287 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD--T 123 + K +++ AI +A LIL ++D +T D + + K IIV NK D Sbjct: 288 -KVEKIGVERSRQAITQADLILLVLDQSEPLTTEDKQLLAATADKK--RIIVLNKQDLPA 344 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 R+ ++ +D EI++ + G L I K+F N ++ +N R Sbjct: 345 RLDTAALLQL--VDADEIIKTAIPTSDGMDALDERIAKLFFGGIENSQGTVMVSNARQ 400 >gi|260495459|ref|ZP_05815585.1| GTP-binding protein Era [Fusobacterium sp. 3_1_33] gi|260196996|gb|EEW94517.1| GTP-binding protein Era [Fusobacterium sp. 3_1_33] Length = 298 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 41/126 (32%), Positives = 70/126 (55%), Gaps = 5/126 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IAVVGRPNVGKSTLIN+L+ + ++G TRD++ N+K++ DT G+ KP Sbjct: 6 IAVVGRPNVGKSTLINKLVSEKVAIVSDKAGTTRDNIKGILNFKDNQYIFIDTPGIHKPQ 65 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHA--VVLALNK 323 + L + ++ ++ + + L+DA+ P D+ ++D + +L +NK Sbjct: 66 HL---LGEYMTNIAVSILKDVDIILFLIDASKPIGTGDMFVMDRINENAKKKPKILLVNK 122 Query: 324 WDMVSD 329 D++SD Sbjct: 123 VDLISD 128 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 42/120 (35%), Positives = 66/120 (55%), Gaps = 3/120 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTL N+LV +K+A+V + G TRD + G + +DT GI + Sbjct: 6 IAVVGRPNVGKSTLINKLVSEKVAIVSDKAGTTRDNIKGILNFKDNQYIFIDTPGIHKPQ 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRK--KNIPIIIVSNKMD 122 + + + M + + + +ILFLID+ I D + + + K P I++ NK+D Sbjct: 66 HL-LGEYMTNIAVSILKDVDIILFLIDASKPIGTGDMFVMDRINENAKKKPKILLVNKVD 124 >gi|330999189|ref|ZP_08322908.1| ribosome biogenesis GTPase Era [Parasutterella excrementihominis YIT 11859] gi|329575389|gb|EGG56933.1| ribosome biogenesis GTPase Era [Parasutterella excrementihominis YIT 11859] Length = 303 Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 49/187 (26%), Positives = 87/187 (46%), Gaps = 11/187 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A++G PNVGKSTL N LV +K+++ P TRDR+ G + + VDT G Sbjct: 18 VAVIGRPNVGKSTLINALVGEKVSITSKKPQTTRDRIMGVLTTDNAQYLFVDTPGFQTKH 77 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + +MN ++++ ++ +I++ G P D + + L K +I+ NK D Sbjct: 78 SSELLARMNQSVRSSLSDVDAVVMVIEA-TGWRPEDQVVLNLLSKDAKNVILAINKTDEV 136 Query: 125 IAQRNFY-----EIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNK 179 + F ++V +SAE L VI +KY ++ E++ Sbjct: 137 KESEAMLPLIKEAMEKFPFADVVPVSAEKTRQLDVLLDVI-----RKYLPEGDKLYEDDI 191 Query: 180 RNEESPK 186 ++SP+ Sbjct: 192 YTDKSPR 198 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 52/182 (28%), Positives = 92/182 (50%), Gaps = 9/182 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGM--RK 263 +AV+GRPNVGKSTLIN L+G +T + TRD + N DT G + Sbjct: 18 VAVIGRPNVGKSTLINALVGEKVSITSKKPQTTRDRIMGVLTTDNAQYLFVDTPGFQTKH 77 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 S + + Q +V+ S+ V + +++++AT + +D +++ + V+LA+NK Sbjct: 78 SSELLARMNQ-SVRSSLSDV---DAVVMVIEAT-GWRPEDQVVLNLLSKDAKNVILAINK 132 Query: 324 WDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVL-EINKLWKTRI 382 D V + +L L +A++ P + ++ R + L D++ L E +KL++ I Sbjct: 133 TDEVKESEAMLP-LIKEAMEKFPFADVVPVSAEKTRQLDVLLDVIRKYLPEGDKLYEDDI 191 Query: 383 TT 384 T Sbjct: 192 YT 193 >gi|310659884|ref|YP_003937605.1| GTPase [Clostridium sticklandii DSM 519] gi|308826662|emb|CBH22700.1| GTPase [Clostridium sticklandii] Length = 459 Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 45/129 (34%), Positives = 74/129 (57%), Gaps = 8/129 (6%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 L+ +VG+PNVGKS+L+N +L +R + G TRD + N P++I DTAG+R+ Sbjct: 222 LKTVIVGKPNVGKSSLLNAILKESRAIVTEIEGTTRDIIEEYVNIGGIPLKIVDTAGIRE 281 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 + E + V+KS +S + + I++LD++ QD I+ S+ A++L +NK Sbjct: 282 TDDLVEKI---GVQKSKESFESADLVIMMLDSSRHLSNQDQDIL-SLLGDKKAIIL-VNK 336 Query: 324 WD---MVSD 329 D MV+D Sbjct: 337 TDLPSMVTD 345 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/116 (36%), Positives = 63/116 (54%), Gaps = 3/116 (2%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PNVGKS+L N ++K+ A+V G TRD + I G+ IVDTAGI + + Sbjct: 226 IVGKPNVGKSSLLNAILKESRAIVTEIEGTTRDIIEEYVNIGGIPLKIVDTAGIRETDDL 285 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + K +++ + A L++ ++DS ++ D I S L K II+ NK D Sbjct: 286 -VEKIGVQKSKESFESADLVIMMLDSSRHLSNQDQDILSLLGDKK--AIILVNKTD 338 >gi|224500518|ref|ZP_03668867.1| GTP-binding protein Era [Listeria monocytogenes Finland 1988] Length = 299 Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 49/150 (32%), Positives = 80/150 (53%), Gaps = 13/150 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N ++ +K+A++ + TR+++ G + +DT GI K Sbjct: 10 VAIVGRPNVGKSTLLNHIIGQKIAIMSDKAQTTRNKVQGVYTTDESQIIFIDTPGIHKPK 69 Query: 65 NCSIAKQMNDQTELAIN---EAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 + K + ++A+N E LI F+ID+ G D I L+ P+ ++ NK+ Sbjct: 70 H----KLGDFMVKIALNTFQEVDLIYFVIDASTGFGRGDEFIIEKLKNVQTPVFLLINKI 125 Query: 122 DTRIAQRNFYEIYS-----LDFKEIVEISA 146 D IA + +++ +DF EI+ ISA Sbjct: 126 DL-IAPEDLFKLIEQYRDLMDFDEIIPISA 154 Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 42/144 (29%), Positives = 74/144 (51%), Gaps = 8/144 (5%) Query: 200 ISKPLR---IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIF 256 +S+P + +A+VGRPNVGKSTL+N ++G + ++ TR+ V + I Sbjct: 1 MSEPFKSGFVAIVGRPNVGKSTLLNHIIGQKIAIMSDKAQTTRNKVQGVYTTDESQIIFI 60 Query: 257 DTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHA 316 DT G+ KP L VK ++ + + + ++DA+ F + D I++ + N Sbjct: 61 DTPGIHKPKH---KLGDFMVKIALNTFQEVDLIYFVIDASTGFGRGDEFIIEKLKNVQTP 117 Query: 317 VVLALNKWDMVS--DKLNLLQDLR 338 V L +NK D+++ D L++ R Sbjct: 118 VFLLINKIDLIAPEDLFKLIEQYR 141 >gi|126208026|ref|YP_001053251.1| GTP-binding protein Era [Actinobacillus pleuropneumoniae L20] gi|190149855|ref|YP_001968380.1| GTP-binding protein Era-like protein [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307256563|ref|ZP_07538344.1| GTP-binding protein era [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307263178|ref|ZP_07544799.1| GTP-binding protein era [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|189037248|sp|A3MZR0|ERA_ACTP2 RecName: Full=GTPase Era gi|226741164|sp|B3GX86|ERA_ACTP7 RecName: Full=GTPase Era gi|126096818|gb|ABN73646.1| GTP-binding protein Era-like protein [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|189914986|gb|ACE61238.1| GTP-binding protein Era-like protein [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306864973|gb|EFM96875.1| GTP-binding protein era [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306871540|gb|EFN03263.1| GTP-binding protein era [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 304 Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 52/183 (28%), Positives = 87/183 (47%), Gaps = 20/183 (10%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N+++ +K+++ TR R+ G + VDT G+ + Sbjct: 15 IAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIHTEDQYQAIYVDTPGLHIEE 74 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD-- 122 +I + MN AI + LI+F+++ T D + + LR P+++ NK+D Sbjct: 75 KRAINRLMNRAASSAIGDVDLIIFVVEG-TKWTDDDEMVLNKLRSAKAPVVLAINKVDNI 133 Query: 123 ----------TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPL 172 T ++Q+ DF EI+ ISA+ L ++ K ++ + P Sbjct: 134 KEKDELLPHITELSQK-------FDFAEILPISAQRGKNVHILQKIVRKSLREGVHHFPE 186 Query: 173 EMI 175 E + Sbjct: 187 EYV 189 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 65/130 (50%), Gaps = 5/130 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMR-KP 264 IA+VGRPNVGKSTL+N++LG +T ++ TR + + DT G+ + Sbjct: 15 IAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIHTEDQYQAIYVDTPGLHIEE 74 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 R L + ++ V + I +++ T + D +++ + + VVLA+NK Sbjct: 75 KRAINRLMNRAASSAIGDV---DLIIFVVEGT-KWTDDDEMVLNKLRSAKAPVVLAINKV 130 Query: 325 DMVSDKLNLL 334 D + +K LL Sbjct: 131 DNIKEKDELL 140 >gi|325109259|ref|YP_004270327.1| small GTP-binding protein [Planctomyces brasiliensis DSM 5305] gi|324969527|gb|ADY60305.1| small GTP-binding protein [Planctomyces brasiliensis DSM 5305] Length = 370 Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 57/237 (24%), Positives = 112/237 (47%), Gaps = 33/237 (13%) Query: 149 DLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEESPKEN--ITSEGKSSV--------- 197 DL T+ + + F+ + + PL + +R E+ +EN + +E +S + Sbjct: 122 DLETAVVQARTFRAAEFLWSQRPL--LSVWERCEQILRENGPLPTELRSQLIEASRWSLF 179 Query: 198 -KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIF 256 +++++P ++ + G PN GKS+LIN LLGY R + Q G TRD+V P+ + Sbjct: 180 GQHLTQPWQVVIGGAPNAGKSSLINALLGYERAIVYDQPGTTRDAVKAETAIDGWPVMLS 239 Query: 257 DTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHA 316 DTAG R S E++E ++ + +R+ + ++L+D + P + ++++ Sbjct: 240 DTAGQRASS---ETIEAAGIEIARTLLRSADLAVILIDRSAPSDSD----IETLLQAFPN 292 Query: 317 VVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 ++ NK D + D + D + +S R GL++L+ ++ E Sbjct: 293 ALVVFNKCDQSAHA-----DWTDREF-------DSTVLEVSCRDQTGLEELLTTITE 337 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 50/174 (28%), Positives = 77/174 (44%), Gaps = 24/174 (13%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAG--- 59 + + I GAPN GKS+L N L+ + A+V + PG TRD + + I+G + DTAG Sbjct: 187 WQVVIGGAPNAGKSSLINALLGYERAIVYDQPGTTRDAVKAETAIDGWPVMLSDTAGQRA 246 Query: 60 ---IADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIP-II 115 + IA+ + + A L + LID A P D I + L + P + Sbjct: 247 SSETIEAAGIEIARTL-------LRSADLAVILIDRSA---PSDSDIETLL--QAFPNAL 294 Query: 116 IVSNKMDTRIAQRNFYEIYSLDFKE-IVEISAEHDLGTSELHSVIFKIFKQKYP 168 +V NK D Q + +F ++E+S G EL + I + P Sbjct: 295 VVFNKCD----QSAHADWTDREFDSTVLEVSCRDQTGLEELLTTITEKLVPALP 344 >gi|282880433|ref|ZP_06289141.1| tRNA modification GTPase TrmE [Prevotella timonensis CRIS 5C-B1] gi|281305704|gb|EFA97756.1| tRNA modification GTPase TrmE [Prevotella timonensis CRIS 5C-B1] Length = 478 Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 44/119 (36%), Positives = 66/119 (55%), Gaps = 6/119 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G NVGKSTL N+L+++ A+V N G TRD + ING+ F +DTAGI Sbjct: 235 VAIIGKTNVGKSTLLNQLLEEDKAIVSNIHGTTRDVIEDTTEINGITFRFIDTAGIRKTT 294 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRK-KNIPIIIVSNKMD 122 + I ++T I EA ++L+L D P + L++ K+ +I + NKMD Sbjct: 295 D-EIENLGIERTYQKIEEAKIVLWLTDE----APTKQEVDDLLKRIKDKSLICIQNKMD 348 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 28/95 (29%), Positives = 52/95 (54%), Gaps = 3/95 (3%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 I + + +A++G+ NVGKSTL+N+LL ++ + + G TRD + + DTA Sbjct: 229 IKQGVPVAIIGKTNVGKSTLLNQLLEEDKAIVSNIHGTTRDVIEDTTEINGITFRFIDTA 288 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLD 294 G+RK T+ +E ++++ Q + + + L D Sbjct: 289 GIRKT---TDEIENLGIERTYQKIEEAKIVLWLTD 320 >gi|269958310|ref|YP_003328097.1| tRNA modification GTPase TrmE [Anaplasma centrale str. Israel] gi|269848139|gb|ACZ48783.1| tRNA modification GTPase TrmE [Anaplasma centrale str. Israel] Length = 443 Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 38/86 (44%), Positives = 54/86 (62%), Gaps = 3/86 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKSTLFN L ++ MA+V +PG TRD L I G F IVDTAGI + Sbjct: 217 VAILGKPNVGKSTLFNHLARRDMAIVSEYPGTTRDVLEAHVDIGGYPFIIVDTAGIREST 276 Query: 65 NCSIAKQ--MNDQTELAINEAHLILF 88 + + ++ M ++E A + ++LF Sbjct: 277 DF-VEREGIMRAKSEAATADIRIMLF 301 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/171 (27%), Positives = 81/171 (47%), Gaps = 22/171 (12%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 +R+A++G+PNVGKSTL N L + + G TRD + + +P I DTAG+R+ Sbjct: 215 MRVAILGKPNVGKSTLFNHLARRDMAIVSEYPGTTRDVLEAHVDIGGYPFIIVDTAGIRE 274 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVL--------LDATIPFEKQD----LRIVDSVF 311 T+ +E++ + ++ T + I+L L A E D + ++ Sbjct: 275 S---TDFVEREGIMRAKSEAATADIRIMLFPHSEADNLGAHEAIEGGDDGKTIYVLSKAD 331 Query: 312 NT--GHAVVLALNKWDMVSDKLN-----LLQDLRTKAIKNLPQIGDIYINT 355 N G ++ ++ +VS N LL L+ +AI P+ GD+ I + Sbjct: 332 NAKEGETRIIEGKQFYLVSVHTNLGVDSLLSALKERAIDGFPKSGDVLITS 382 >gi|295099666|emb|CBK88755.1| GTP-binding protein Era [Eubacterium cylindroides T2-87] Length = 300 Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 50/174 (28%), Positives = 86/174 (49%), Gaps = 5/174 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PN GKSTL N L+K+K+A++ + P TR+ + G + + VDT GI + Sbjct: 8 IAIVGRPNAGKSTLMNALLKEKVAIMSDKPNTTRNNIAGILTLEDAQYVFVDTPGIHKPR 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + +N A+ + +I ++ID D I + + + P+I++ NK+D Sbjct: 68 Q-QLGRVLNKNAYTAMEDCDVIGWIIDGTQSFGSGDEFILNRIEQLKKPVILIVNKVDMV 126 Query: 125 IAQRNFYEIYS----LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEM 174 ++ + +F +IV ISA + +EL V + + +P EM Sbjct: 127 KKEKLLETLLGWQDRYNFDQIVPISALKENNLNELLDVFREYLPEGGMLYPSEM 180 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 45/161 (27%), Positives = 76/161 (47%), Gaps = 17/161 (10%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA+VGRPN GKSTL+N LL + + TR++++ ++ DT G+ KP Sbjct: 8 IAIVGRPNAGKSTLMNALLKEKVAIMSDKPNTTRNNIAGILTLEDAQYVFVDTPGIHKPR 67 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + L + K + ++ C+ ++D T F D I++ + V+L +NK D Sbjct: 68 ---QQLGRVLNKNAYTAMEDCDVIGWIIDGTQSFGSGDEFILNRIEQLKKPVILIVNKVD 124 Query: 326 MV------------SDKLNLLQDLRTKAIK--NLPQIGDIY 352 MV D+ N Q + A+K NL ++ D++ Sbjct: 125 MVKKEKLLETLLGWQDRYNFDQIVPISALKENNLNELLDVF 165 >gi|284931758|gb|ADC31696.1| tRNA modification GTPase MnmE [Mycoplasma gallisepticum str. F] Length = 453 Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 48/128 (37%), Positives = 72/128 (56%), Gaps = 20/128 (15%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIING-VIFNIVDTAGIADG 63 IAIVG PN GKS+L N L+ ++ A+V N PG TRD + GQ ++N +I N++DTAGI Sbjct: 224 IAIVGEPNAGKSSLLNSLLNEQKAIVTNIPGTTRDTVEGQIVLNDQLIINLIDTAGI--- 280 Query: 64 KNCSIAKQMNDQTEL--------AINEAHLILFLIDSKAGITPYDHA-ITSFLRKKNIPI 114 ++ +DQ E I+++ L+++LID YD I +L K Sbjct: 281 ------RKSSDQIEQIGINKSFKTIDKSDLVIYLIDLNK-YQNYDKTNIYKYLINKKKQF 333 Query: 115 IIVSNKMD 122 ++V NK+D Sbjct: 334 VLVGNKVD 341 Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 46/137 (33%), Positives = 69/137 (50%), Gaps = 4/137 (2%) Query: 197 VKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHP-IEI 255 +K IS+ ++IA+VG PN GKS+L+N LL + + + G TRD+V + I + Sbjct: 215 LKQISEGIKIAIVGEPNAGKSSLLNSLLNEQKAIVTNIPGTTRDTVEGQIVLNDQLIINL 274 Query: 256 FDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGH 315 DTAG+RK S + +EQ + KS +++ + I L+D I + N Sbjct: 275 IDTAGIRKSS---DQIEQIGINKSFKTIDKSDLVIYLIDLNKYQNYDKTNIYKYLINKKK 331 Query: 316 AVVLALNKWDMVSDKLN 332 VL NK D V LN Sbjct: 332 QFVLVGNKVDEVDPTLN 348 >gi|16803502|ref|NP_464987.1| GTP-binding protein Era [Listeria monocytogenes EGD-e] gi|46907690|ref|YP_014079.1| GTP-binding protein Era [Listeria monocytogenes serotype 4b str. F2365] gi|47093486|ref|ZP_00231249.1| GTP-binding protein Era [Listeria monocytogenes str. 4b H7858] gi|47095413|ref|ZP_00233023.1| GTP-binding protein Era [Listeria monocytogenes str. 1/2a F6854] gi|224501598|ref|ZP_03669905.1| GTP-binding protein Era [Listeria monocytogenes FSL R2-561] gi|226224063|ref|YP_002758170.1| GTP binding protein [Listeria monocytogenes Clip81459] gi|254824479|ref|ZP_05229480.1| GTP-binding protein Era [Listeria monocytogenes FSL J1-194] gi|254827750|ref|ZP_05232437.1| GTP-binding protein Era [Listeria monocytogenes FSL N3-165] gi|254829779|ref|ZP_05234434.1| GTP-binding protein Era [Listeria monocytogenes 10403S] gi|254852087|ref|ZP_05241435.1| GTP-binding protein Era [Listeria monocytogenes FSL R2-503] gi|254898372|ref|ZP_05258296.1| GTP-binding protein Era [Listeria monocytogenes J0161] gi|254912136|ref|ZP_05262148.1| GTP-binding protein Era [Listeria monocytogenes J2818] gi|254936464|ref|ZP_05268161.1| GTP-binding protein Era [Listeria monocytogenes F6900] gi|255521277|ref|ZP_05388514.1| GTP-binding protein Era [Listeria monocytogenes FSL J1-175] gi|284801849|ref|YP_003413714.1| GTP-binding protein Era [Listeria monocytogenes 08-5578] gi|284994991|ref|YP_003416759.1| GTP-binding protein Era [Listeria monocytogenes 08-5923] gi|300765605|ref|ZP_07075584.1| GTP-binding protein Era [Listeria monocytogenes FSL N1-017] gi|21263579|sp|Q8Y750|ERA_LISMO RecName: Full=GTPase Era gi|67460115|sp|Q71ZK8|ERA_LISMF RecName: Full=GTPase Era gi|259645949|sp|C1KVA9|ERA_LISMC RecName: Full=GTPase Era gi|16410891|emb|CAC99540.1| lmo1462 [Listeria monocytogenes EGD-e] gi|46880959|gb|AAT04256.1| GTP-binding protein Era [Listeria monocytogenes serotype 4b str. F2365] gi|47016234|gb|EAL07157.1| GTP-binding protein Era [Listeria monocytogenes str. 1/2a F6854] gi|47018162|gb|EAL08932.1| GTP-binding protein Era [Listeria monocytogenes str. 4b H7858] gi|225876525|emb|CAS05234.1| Putative GTP binding protein [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258600129|gb|EEW13454.1| GTP-binding protein Era [Listeria monocytogenes FSL N3-165] gi|258605386|gb|EEW17994.1| GTP-binding protein Era [Listeria monocytogenes FSL R2-503] gi|258609056|gb|EEW21664.1| GTP-binding protein Era [Listeria monocytogenes F6900] gi|284057411|gb|ADB68352.1| GTP-binding protein Era [Listeria monocytogenes 08-5578] gi|284060458|gb|ADB71397.1| GTP-binding protein Era [Listeria monocytogenes 08-5923] gi|293590107|gb|EFF98441.1| GTP-binding protein Era [Listeria monocytogenes J2818] gi|293593717|gb|EFG01478.1| GTP-binding protein Era [Listeria monocytogenes FSL J1-194] gi|300513706|gb|EFK40774.1| GTP-binding protein Era [Listeria monocytogenes FSL N1-017] gi|328465505|gb|EGF36734.1| GTPase Era [Listeria monocytogenes 1816] Length = 301 Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 49/150 (32%), Positives = 80/150 (53%), Gaps = 13/150 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N ++ +K+A++ + TR+++ G + +DT GI K Sbjct: 10 VAIVGRPNVGKSTLLNHIIGQKIAIMSDKAQTTRNKVQGVYTTDESQIIFIDTPGIHKPK 69 Query: 65 NCSIAKQMNDQTELAIN---EAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 + K + ++A+N E LI F+ID+ G D I L+ P+ ++ NK+ Sbjct: 70 H----KLGDFMVKIALNTFQEVDLIYFVIDASTGFGRGDEFIIEKLKNVQTPVFLLINKI 125 Query: 122 DTRIAQRNFYEIYS-----LDFKEIVEISA 146 D IA + +++ +DF EI+ ISA Sbjct: 126 DL-IAPEDLFKLIEQYRDLMDFDEIIPISA 154 Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 42/144 (29%), Positives = 74/144 (51%), Gaps = 8/144 (5%) Query: 200 ISKPLR---IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIF 256 +S+P + +A+VGRPNVGKSTL+N ++G + ++ TR+ V + I Sbjct: 1 MSEPFKSGFVAIVGRPNVGKSTLLNHIIGQKIAIMSDKAQTTRNKVQGVYTTDESQIIFI 60 Query: 257 DTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHA 316 DT G+ KP L VK ++ + + + ++DA+ F + D I++ + N Sbjct: 61 DTPGIHKPKH---KLGDFMVKIALNTFQEVDLIYFVIDASTGFGRGDEFIIEKLKNVQTP 117 Query: 317 VVLALNKWDMVS--DKLNLLQDLR 338 V L +NK D+++ D L++ R Sbjct: 118 VFLLINKIDLIAPEDLFKLIEQYR 141 >gi|321311014|ref|YP_004193343.1| tRNA modification GTPase [Mycoplasma haemofelis str. Langford 1] gi|319802858|emb|CBY93504.1| tRNA modification GTPase [Mycoplasma haemofelis str. Langford 1] Length = 431 Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 50/196 (25%), Positives = 100/196 (51%), Gaps = 28/196 (14%) Query: 194 KSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPI 253 +SS K R+ +VGRPN GKS+LIN L+G ++++ ++G TRD+V + + + ++ + Sbjct: 205 ESSKKQKLSGFRVVLVGRPNAGKSSLINHLIGKDKIIVSPEAGTTRDTVEVDYQFDDYLL 264 Query: 254 EIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNT 313 + DTAG+ + + + L +++++S ++R + + L+ +K++L+ + F Sbjct: 265 TLVDTAGIYE---VDDFLTNESIRRSKDAIRDADLLVHLVSLE---DKKNLKELVGEFG- 317 Query: 314 GHAVVLALNKWDMV-------------SDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 G +V+ K D+ S+ L+ LR +N +G ++ Sbjct: 318 GKSVITIFTKSDLFPHTRESNCISVKNSEISEFLRLLRNHLKENYSSVG--------VKS 369 Query: 361 GEGLDDLMVSVLEINK 376 EG++ L S LE+ K Sbjct: 370 QEGINHLNNSCLELEK 385 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 1/88 (1%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + + +VG PN GKS+L N L+ K +V G TRD + + + +VDTAGI + Sbjct: 215 FRVVLVGRPNAGKSSLINHLIGKDKIIVSPEAGTTRDTVEVDYQFDDYLLTLVDTAGIYE 274 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLI 90 + + + +++ AI +A L++ L+ Sbjct: 275 VDDF-LTNESIRRSKDAIRDADLLVHLV 301 >gi|167837347|ref|ZP_02464230.1| GTP-binding protein Era [Burkholderia thailandensis MSMB43] Length = 299 Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 45/149 (30%), Positives = 73/149 (48%), Gaps = 7/149 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N LV +K+++ TR R+ G ++ + VDT G Sbjct: 14 IAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRITGIRTLDDAQYIFVDTPGFQTRH 73 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + ++ + +N + ILF+I++ P D + + P ++V+NK+D Sbjct: 74 STALNRSLNRAVTSTLTSVDAILFVIEA-GRFGPDDQKVLDLI-PPGTPTLLVANKLDRV 131 Query: 125 IAQRNFYEIYS-----LDFKEIVEISAEH 148 + Y + +F EIV +SA+H Sbjct: 132 SDKGTLYPFFQKMGELREFAEIVPLSAKH 160 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 40/128 (31%), Positives = 66/128 (51%), Gaps = 4/128 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA+VGRPNVGKSTL+N L+G +T ++ TR ++ + DT G + + Sbjct: 14 IAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRITGIRTLDDAQYIFVDTPGFQ--T 71 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 R + +L +++ +++ S T I+ + F D +++D + G +L NK D Sbjct: 72 RHSTAL-NRSLNRAVTSTLTSVDAILFVIEAGRFGPDDQKVLD-LIPPGTPTLLVANKLD 129 Query: 326 MVSDKLNL 333 VSDK L Sbjct: 130 RVSDKGTL 137 >gi|258517429|ref|YP_003193651.1| tRNA modification GTPase TrmE [Desulfotomaculum acetoxidans DSM 771] gi|257781134|gb|ACV65028.1| tRNA modification GTPase TrmE [Desulfotomaculum acetoxidans DSM 771] Length = 461 Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 53/186 (28%), Positives = 93/186 (50%), Gaps = 27/186 (14%) Query: 182 EESPKENITSEGKSSVKNISK-------------PLRIAVVGRPNVGKSTLINRLLGYNR 228 E S E I +E K +K I+K L + + G+PNVGKS+L+N LL R Sbjct: 188 EASTIEKIKAEIKDIIKEINKWIELARAGKIYREGLAVVIAGKPNVGKSSLLNALLKEKR 247 Query: 229 LLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCET 288 + G TRD++ N K P++I DTAG+R+ +++E+ V+ S + + + Sbjct: 248 AIVTEIPGTTRDAIEEYINIKGIPVKITDTAGLRETG---DTVEKIGVQISKEKIMGADI 304 Query: 289 TIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM---------VSDKLNLLQDLRT 339 + +LD F D ++D V N +++ +NK D+ +S+K L+ ++ Sbjct: 305 ILYMLDVKNGFTDVDCYVLDEVIN--RNLIVIINKIDVGSGIEIINNISNKYENLEIVQI 362 Query: 340 KAIKNL 345 A+K++ Sbjct: 363 SALKDI 368 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 59/181 (32%), Positives = 89/181 (49%), Gaps = 8/181 (4%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 + I G PNVGKS+L N L+K+K A+V PG TRD + I G+ I DTAG+ + Sbjct: 224 AVVIAGKPNVGKSSLLNALLKEKRAIVTEIPGTTRDAIEEYINIKGIPVKITDTAGLRET 283 Query: 64 KNC--SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 + I Q++ + I A +IL+++D K G T D + + +N+ +II NK+ Sbjct: 284 GDTVEKIGVQISKEK---IMGADIILYMLDVKNGFTDVDCYVLDEVINRNLIVII--NKI 338 Query: 122 DTRIAQRNFYEIYS-LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 D I + + EIV+ISA D+G L I E+I +N R Sbjct: 339 DVGSGIEIINNISNKYENLEIVQISALKDIGLDLLEDAIASFVFSGNAAASNEIIISNTR 398 Query: 181 N 181 + Sbjct: 399 H 399 >gi|317122971|ref|YP_004102974.1| GTP-binding protein Era [Thermaerobacter marianensis DSM 12885] gi|315592951|gb|ADU52247.1| GTP-binding protein Era [Thermaerobacter marianensis DSM 12885] Length = 391 Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 72/253 (28%), Positives = 114/253 (45%), Gaps = 24/253 (9%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A++G PNVGKSTL N+L+ +K+A++ + P TR R+ G G VDT GI + Sbjct: 103 VALIGRPNVGKSTLLNQLIGRKIAIMSDKPQTTRTRILGVLNRPGAQLIFVDTPGIHKPQ 162 Query: 65 NCSIAKQMNDQTELAINEAHLILFLI---DSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 + + + M + E ++ +L+ D + G P D I L + P I+V NK+ Sbjct: 163 HL-LGEHMVRVARRTLQEVEVVCWLVEAPDREPG--PGDRYIAEQLVEVKTPKILVVNKI 219 Query: 122 DT-------RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEM 174 D IAQR F ++ F + +SA H +G EL + Q P +M Sbjct: 220 DQVAPGEVPAIAQR-FAQLGQ--FAAVHPVSALHGVGVPELVEELEGRLPQGPRFFPEDM 276 Query: 175 IENNKRNE---ESPKENITSEGKSSVKNISKPLRIAVVGRPN----VGKSTLINRLLGYN 227 I + + E +E I + V + L V RPN V + + R G Sbjct: 277 ITDQPEAQIMAELIREQILHRTREEVPHAVAVLIEKVERRPNGVVYVPATIYVER-EGQK 335 Query: 228 RLLTGSQSGITRD 240 R+L G Q + ++ Sbjct: 336 RILIGEQGRMLKE 348 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 38/146 (26%), Positives = 71/146 (48%), Gaps = 13/146 (8%) Query: 191 SEGKSSVKNISKP--LR---IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSIS 245 ++G++ + +P R +A++GRPNVGKSTL+N+L+G + + TR + Sbjct: 83 ADGRAPARAAGQPEGFRSGFVALIGRPNVGKSTLLNQLIGRKIAIMSDKPQTTRTRILGV 142 Query: 246 WNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ--- 302 N + DT G+ KP + L + V+ + ++++ E L++A P + Sbjct: 143 LNRPGAQLIFVDTPGIHKPQHL---LGEHMVRVARRTLQEVEVVCWLVEA--PDREPGPG 197 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVS 328 D I + + +L +NK D V+ Sbjct: 198 DRYIAEQLVEVKTPKILVVNKIDQVA 223 >gi|296876081|ref|ZP_06900135.1| GTP-binding protein Era [Streptococcus parasanguinis ATCC 15912] gi|296432792|gb|EFH18585.1| GTP-binding protein Era [Streptococcus parasanguinis ATCC 15912] Length = 299 Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 50/179 (27%), Positives = 89/179 (49%), Gaps = 7/179 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKST N ++ +K+A++ + TR+++ G N +DT GI K Sbjct: 8 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTNKEQIVFIDTPGIHKPK 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM--- 121 ++ M + + E +LF++ + D I L+ +P+I+V NK+ Sbjct: 68 -TALGDFMVESAYSTLREVDTVLFMVPADEARGKGDDMIIERLKAAKVPVILVVNKIDKV 126 Query: 122 --DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 D +AQ + + +DFKEIV ISA S L ++ + ++ + P + I ++ Sbjct: 127 HPDQLLAQIDDFR-SQMDFKEIVPISALQGNNVSRLIDILSENLEEGFQYFPADQITDH 184 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/137 (27%), Positives = 67/137 (48%), Gaps = 5/137 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKST +N ++G + ++ TR+ + + I DT G+ KP Sbjct: 8 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTNKEQIVFIDTPGIHKPK 67 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +L V+ + ++R +T + ++ A K D I++ + V+L +NK D Sbjct: 68 T---ALGDFMVESAYSTLREVDTVLFMVPADEARGKGDDMIIERLKAAKVPVILVVNKID 124 Query: 326 MVSDKLNLLQ--DLRTK 340 V L Q D R++ Sbjct: 125 KVHPDQLLAQIDDFRSQ 141 >gi|34499858|ref|NP_904073.1| tRNA modification GTPase TrmE [Chromobacterium violaceum ATCC 12472] gi|46577367|sp|Q7NPT9|MNME_CHRVO RecName: Full=tRNA modification GTPase mnmE gi|34105708|gb|AAQ62062.1| thiophene and furan oxidation protein ThdF [Chromobacterium violaceum ATCC 12472] Length = 450 Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 44/118 (37%), Positives = 69/118 (58%), Gaps = 2/118 (1%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + +VG PNVGKS+L N L +A+V + G TRD + + +I+GV +I+DTAG+ D Sbjct: 222 VVLVGQPNVGKSSLMNALAGDDIAIVTDIAGTTRDTVREEIVIDGVPVHIIDTAGLRDTD 281 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + + K ++T A+ A L L L+DS+ G+T +I L +P + V NK+D Sbjct: 282 DV-VEKIGIERTWQAVERADLALLLVDSREGLTAEVQSILERL-PPALPRVQVFNKVD 337 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 29/96 (30%), Positives = 55/96 (57%), Gaps = 3/96 (3%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + + + +VG+PNVGKS+L+N L G + + +G TRD+V P+ I DTA Sbjct: 216 LREGMHVVLVGQPNVGKSSLMNALAGDDIAIVTDIAGTTRDTVREEIVIDGVPVHIIDTA 275 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDA 295 G+R + E + ++++ Q+V + ++L+D+ Sbjct: 276 GLRDTDDVVEKI---GIERTWQAVERADLALLLVDS 308 >gi|323141443|ref|ZP_08076333.1| tRNA modification GTPase TrmE [Phascolarctobacterium sp. YIT 12067] gi|322414099|gb|EFY04928.1| tRNA modification GTPase TrmE [Phascolarctobacterium sp. YIT 12067] Length = 459 Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 41/117 (35%), Positives = 68/117 (58%), Gaps = 3/117 (2%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AIVG PNVGKS+L N L++++ A+V + G TRD + Q +++GV + DTAGI + Sbjct: 225 AIVGRPNVGKSSLLNALLREERAIVSQYAGTTRDVIEEQLLLDGVPLVLADTAGIR-ATD 283 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + K +++ + ++ L++ +ID G+T D AI K P +++ NK D Sbjct: 284 DFVEKIGVEKSRQLLADSELVICVIDGSDGLTDEDEAILEAAAGK--PCVVIVNKSD 338 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 80/165 (48%), Gaps = 11/165 (6%) Query: 167 YPNHPLEMIENNKRNEE-----SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLIN 221 YP +E + + E S E++ + + K + + LR A+VGRPNVGKS+L+N Sbjct: 181 YPEEDIEDVTYGRVQESLSTVCSGIEHLLAHAHTG-KILREGLRTAIVGRPNVGKSSLLN 239 Query: 222 RLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQ 281 LL R + +G TRD + P+ + DTAG+R E + V+KS Q Sbjct: 240 ALLREERAIVSQYAGTTRDVIEEQLLLDGVPLVLADTAGIRATDDFVEKI---GVEKSRQ 296 Query: 282 SVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 + E I ++D + +D I+++ G V+ +NK D+ Sbjct: 297 LLADSELVICVIDGSDGLTDEDEAILEAA--AGKPCVVIVNKSDL 339 >gi|199598240|ref|ZP_03211661.1| tRNA modification GTPase TrmE [Lactobacillus rhamnosus HN001] gi|199590843|gb|EDY98928.1| tRNA modification GTPase TrmE [Lactobacillus rhamnosus HN001] Length = 462 Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 44/143 (30%), Positives = 81/143 (56%), Gaps = 7/143 (4%) Query: 195 SSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIE 254 S K + + L A+VGRPNVGKS+L+N +L ++ + +G TRD + N + P++ Sbjct: 216 SQGKVLREGLATAIVGRPNVGKSSLLNHMLHEDKAIVTDVAGTTRDVLEEYVNVRGVPLK 275 Query: 255 IFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTG 314 + DTAG+ T+ +E+ V++S Q++ + +++LD + P +D +++ + + Sbjct: 276 LVDTAGIHDT---TDKVEKIGVERSRQAITQADLILLVLDQSEPLTTEDKQLLAATADKK 332 Query: 315 HAVVLALNKWDMVS--DKLNLLQ 335 +V LNK D+ + D LLQ Sbjct: 333 RIIV--LNKQDLPARLDTTALLQ 353 Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 57/178 (32%), Positives = 87/178 (48%), Gaps = 7/178 (3%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AIVG PNVGKS+L N ++ + A+V + G TRD L + GV +VDTAGI D + Sbjct: 228 AIVGRPNVGKSSLLNHMLHEDKAIVTDVAGTTRDVLEEYVNVRGVPLKLVDTAGIHDTTD 287 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD--T 123 + K +++ AI +A LIL ++D +T D + + K IIV NK D Sbjct: 288 -KVEKIGVERSRQAITQADLILLVLDQSEPLTTEDKQLLAATADKK--RIIVLNKQDLPA 344 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 R+ ++ +D EI++ + G L I K+F N ++ +N R Sbjct: 345 RLDTTALLQL--VDADEIIKTAIPTSDGMDALDERIAKLFFGGIENSQGTVMVSNARQ 400 >gi|254932647|ref|ZP_05266006.1| GTP-binding protein Era [Listeria monocytogenes HPB2262] gi|293584206|gb|EFF96238.1| GTP-binding protein Era [Listeria monocytogenes HPB2262] gi|328474974|gb|EGF45768.1| GTPase Era [Listeria monocytogenes 220] gi|332311903|gb|EGJ24998.1| GTP-binding protein Era [Listeria monocytogenes str. Scott A] Length = 301 Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 49/150 (32%), Positives = 80/150 (53%), Gaps = 13/150 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N ++ +K+A++ + TR+++ G + +DT GI K Sbjct: 10 VAIVGRPNVGKSTLLNHIIGQKIAIMSDKAQTTRNKVQGVYTTDESQIIFIDTPGIHKPK 69 Query: 65 NCSIAKQMNDQTELAIN---EAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 + K + ++A+N E LI F+ID+ G D I L+ P+ ++ NK+ Sbjct: 70 H----KLGDFMVKIALNTFQEVDLIYFVIDASTGFGRGDEFIIEKLKNVQTPVFLLINKI 125 Query: 122 DTRIAQRNFYEIYS-----LDFKEIVEISA 146 D IA + +++ +DF EI+ ISA Sbjct: 126 DL-IAPEDLFKLIEQYRDLMDFDEIIPISA 154 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 42/144 (29%), Positives = 74/144 (51%), Gaps = 8/144 (5%) Query: 200 ISKPLR---IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIF 256 +S+P + +A+VGRPNVGKSTL+N ++G + ++ TR+ V + I Sbjct: 1 MSEPFKSGFVAIVGRPNVGKSTLLNHIIGQKIAIMSDKAQTTRNKVQGVYTTDESQIIFI 60 Query: 257 DTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHA 316 DT G+ KP L VK ++ + + + ++DA+ F + D I++ + N Sbjct: 61 DTPGIHKPKH---KLGDFMVKIALNTFQEVDLIYFVIDASTGFGRGDEFIIEKLKNVQTP 117 Query: 317 VVLALNKWDMVS--DKLNLLQDLR 338 V L +NK D+++ D L++ R Sbjct: 118 VFLLINKIDLIAPEDLFKLIEQYR 141 >gi|295097901|emb|CBK86991.1| GTP-binding protein Era [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 301 Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 50/178 (28%), Positives = 86/178 (48%), Gaps = 6/178 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N L+ +K+++ TR R+ G VDT G+ + Sbjct: 11 IAIVGRPNVGKSTLLNNLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN +I + L++F+++ TP D + + LR P+I+ NK+D Sbjct: 71 KRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLRDGKTPVILAVNKVDNV 129 Query: 125 IAQRNF-----YEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 + + + ++F +IV +SAE L + ++ K + + P + I + Sbjct: 130 QEKADLLPHLQWLGSQMNFLDIVPLSAETGLNVDTIAGIVRKHLPEATHHFPEDYITD 187 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 43/134 (32%), Positives = 70/134 (52%), Gaps = 5/134 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS-VSISWNWKNHPIEIFDTAGMRKP 264 IA+VGRPNVGKSTL+N LLG +T ++ TR V I I + DT G+ Sbjct: 11 IAIVGRPNVGKSTLLNNLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYV-DTPGLHME 69 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 + ++ + K + S+ E I +++ T + D +++ + + V+LA+NK Sbjct: 70 EK--RAINRLMNKAASSSIGDVELVIFVVEGT-RWTPDDEMVLNKLRDGKTPVILAVNKV 126 Query: 325 DMVSDKLNLLQDLR 338 D V +K +LL L+ Sbjct: 127 DNVQEKADLLPHLQ 140 >gi|261340867|ref|ZP_05968725.1| GTP-binding protein Era [Enterobacter cancerogenus ATCC 35316] gi|288317298|gb|EFC56236.1| GTP-binding protein Era [Enterobacter cancerogenus ATCC 35316] Length = 301 Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 50/176 (28%), Positives = 85/176 (48%), Gaps = 6/176 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N L+ +K+++ TR R+ G VDT G+ + Sbjct: 11 IAIVGRPNVGKSTLLNNLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN +I + L++F+++ TP D + + LR P+I+ NK+D Sbjct: 71 KRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLRDGKTPVILAVNKVDNV 129 Query: 125 IAQRNF-----YEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 + + + ++F +IV +SAE L + ++ K + + P + I Sbjct: 130 QEKADLLPHLQWLGSQMNFLDIVPLSAETGLNVDTIAGIVRKHLPEAIHHFPEDYI 185 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 43/134 (32%), Positives = 70/134 (52%), Gaps = 5/134 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS-VSISWNWKNHPIEIFDTAGMRKP 264 IA+VGRPNVGKSTL+N LLG +T ++ TR V I I + DT G+ Sbjct: 11 IAIVGRPNVGKSTLLNNLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYV-DTPGLHME 69 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 + ++ + K + S+ E I +++ T + D +++ + + V+LA+NK Sbjct: 70 EK--RAINRLMNKAASSSIGDVELVIFVVEGT-RWTPDDEMVLNKLRDGKTPVILAVNKV 126 Query: 325 DMVSDKLNLLQDLR 338 D V +K +LL L+ Sbjct: 127 DNVQEKADLLPHLQ 140 >gi|209519685|ref|ZP_03268474.1| tRNA modification GTPase TrmE [Burkholderia sp. H160] gi|209499902|gb|EDZ99968.1| tRNA modification GTPase TrmE [Burkholderia sp. H160] Length = 464 Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 49/160 (30%), Positives = 86/160 (53%), Gaps = 4/160 (2%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 ++ + G PNVGKS+L N L ++A+V G TRD++ I G+ +++DTAG+ + Sbjct: 228 SVVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQIEGIPLHVIDTAGLRET 287 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD- 122 ++ + K ++T I A ++L L+D++AG+T D I + +P++ V NK D Sbjct: 288 ED-EVEKIGIERTWGEIERADVVLHLLDARAGMTADDETIAGRF-PRGVPVVRVLNKTDL 345 Query: 123 TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKI 162 T +A L+ E V +SA+ G + L + +I Sbjct: 346 TGLAPATQALDADLELSE-VRLSAKKGDGVALLRDELLRI 384 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 53/221 (23%), Positives = 96/221 (43%), Gaps = 25/221 (11%) Query: 114 IIIVSNKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLE 173 +I S + R A R+ +S D +VE + ++ + + P E Sbjct: 142 LIEASTEAAARSAGRSLDGAFSRDIHALVE------------EVITLRMLVEATLDFPEE 189 Query: 174 MIENNKRNEESPK--------ENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLG 225 I+ + + K ++ SE + + + L + + G+PNVGKS+L+N L G Sbjct: 190 EIDFLEAADARGKLTRIRERLAHVLSEARQGAL-LREGLSVVLAGQPNVGKSSLLNALAG 248 Query: 226 YNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRT 285 + +G TRD V+ + + P+ + DTAG+R+ + +E+ ++++ + Sbjct: 249 AELAIVTPIAGTTRDKVAQTIQIEGIPLHVIDTAGLRETE---DEVEKIGIERTWGEIER 305 Query: 286 CETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 + + LLDA D I F G VV LNK D+ Sbjct: 306 ADVVLHLLDARAGMTADDETIAGR-FPRGVPVVRVLNKTDL 345 >gi|328794276|ref|XP_001123208.2| PREDICTED: tRNA modification GTPase mnmE-like, partial [Apis mellifera] Length = 342 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 47/174 (27%), Positives = 88/174 (50%), Gaps = 7/174 (4%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + + + +VG PNVGKS+L+N L G + + +G TRD+V P+ I DTA Sbjct: 100 LREGMNVVLVGAPNVGKSSLLNALAGDDIAIVTDIAGTTRDTVREQITLDGVPVHIIDTA 159 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R+ + E + +++S Q+V+ + ++L+D I+ + + H + + Sbjct: 160 GLRETEDVVERI---GIERSQQAVQQADVALILIDQCEGLNATTAAILAQLPASLHKIEV 216 Query: 320 ALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 NK D+ + + + T ++ G + +S RTGEGLD L ++L+ Sbjct: 217 H-NKIDLTGEAASCVSR-ETGKLRAFTDAGQVI--ALSARTGEGLDLLRQALLQ 266 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 41/118 (34%), Positives = 70/118 (59%), Gaps = 2/118 (1%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + +VGAPNVGKS+L N L +A+V + G TRD + Q ++GV +I+DTAG+ + + Sbjct: 106 VVLVGAPNVGKSSLLNALAGDDIAIVTDIAGTTRDTVREQITLDGVPVHIIDTAGLRETE 165 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + + + ++++ A+ +A + L LID G+ AI + L ++ I V NK+D Sbjct: 166 DV-VERIGIERSQQAVQQADVALILIDQCEGLNATTAAILAQL-PASLHKIEVHNKID 221 >gi|309791157|ref|ZP_07685689.1| tRNA modification GTPase TrmE [Oscillochloris trichoides DG6] gi|308226719|gb|EFO80415.1| tRNA modification GTPase TrmE [Oscillochloris trichoides DG6] Length = 456 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 54/167 (32%), Positives = 88/167 (52%), Gaps = 12/167 (7%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP 264 R A+VGRPNVGKS+L+N LL R + G TRD++ + N P+ + DTAG+R+ Sbjct: 217 RAALVGRPNVGKSSLLNALLRVQRAIVTPIPGTTRDTLEETANLDGIPVVLIDTAGIRES 276 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 + +EQ V++S Q++ + +++LDAT+P D I + ++ +L NK Sbjct: 277 H---DPVEQLGVERSRQALAGADLALLVLDATVPPGPADRVIAELTYDK--PTILIWNKQ 331 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSV 371 D+V + DL + P + + T + TG G+D L S+ Sbjct: 332 DVVHNP-----DLVAPSPFEHPHLLGVVATTAT--TGAGIDTLSHSI 371 Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 41/117 (35%), Positives = 65/117 (55%), Gaps = 3/117 (2%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 A+VG PNVGKS+L N L++ + A+V PG TRD L A ++G+ ++DTAGI + + Sbjct: 219 ALVGRPNVGKSSLLNALLRVQRAIVTPIPGTTRDTLEETANLDGIPVVLIDTAGIRESHD 278 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + + +++ A+ A L L ++D+ P D I K P I++ NK D Sbjct: 279 -PVEQLGVERSRQALAGADLALLVLDATVPPGPADRVIAELTYDK--PTILIWNKQD 332 >gi|167903626|ref|ZP_02490831.1| GTP-binding protein Era [Burkholderia pseudomallei NCTC 13177] Length = 299 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 47/150 (31%), Positives = 79/150 (52%), Gaps = 9/150 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N LV +K+++ TR R+ G ++ + VDT G Sbjct: 14 IAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRITGIHTLDDAQYIFVDTPGFQTRH 73 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + ++ + +N + ILF+I++ P D + + P ++V+NK+D R Sbjct: 74 STALNRSLNRAVTSTLTSVDAILFVIEA-GRFGPDDQKVLDLI-PPGTPTLLVANKLD-R 130 Query: 125 IAQRN-----FYEIYSL-DFKEIVEISAEH 148 ++ ++ F ++ L +F EIV +SA+H Sbjct: 131 VSDKDTLYPFFQKMGGLREFAEIVPLSAKH 160 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 40/128 (31%), Positives = 66/128 (51%), Gaps = 4/128 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA+VGRPNVGKSTL+N L+G +T ++ TR ++ + DT G + + Sbjct: 14 IAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRITGIHTLDDAQYIFVDTPGFQ--T 71 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 R + +L +++ +++ S T I+ + F D +++D + G +L NK D Sbjct: 72 RHSTAL-NRSLNRAVTSTLTSVDAILFVIEAGRFGPDDQKVLD-LIPPGTPTLLVANKLD 129 Query: 326 MVSDKLNL 333 VSDK L Sbjct: 130 RVSDKDTL 137 >gi|307260993|ref|ZP_07542675.1| GTP-binding protein era [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306869295|gb|EFN01090.1| GTP-binding protein era [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 304 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 52/183 (28%), Positives = 87/183 (47%), Gaps = 20/183 (10%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N+++ +K+++ TR R+ G + VDT G+ + Sbjct: 15 IAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIHTEDQYQAIYVDTPGLHIEE 74 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD-- 122 +I + MN AI + LI+F+++ T D + + LR P+++ NK+D Sbjct: 75 KRAINRLMNRAASSAIGDVDLIIFVVEG-TKWTDDDEMVLNKLRSAKAPVVLAINKVDNI 133 Query: 123 ----------TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPL 172 T ++Q+ DF EI+ ISA+ L ++ K ++ + P Sbjct: 134 KEKDELLPHITELSQK-------FDFAEILPISAQRGKNVHILQKIVRKSLREGVHHFPE 186 Query: 173 EMI 175 E + Sbjct: 187 EYV 189 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 65/130 (50%), Gaps = 5/130 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMR-KP 264 IA+VGRPNVGKSTL+N++LG +T ++ TR + + DT G+ + Sbjct: 15 IAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIHTEDQYQAIYVDTPGLHIEE 74 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 R L + ++ V + I +++ T + D +++ + + VVLA+NK Sbjct: 75 KRAINRLMNRAASSAIGDV---DLIIFVVEGT-KWTDDDEMVLNKLRSAKAPVVLAINKV 130 Query: 325 DMVSDKLNLL 334 D + +K LL Sbjct: 131 DNIKEKDELL 140 >gi|295425821|ref|ZP_06818502.1| tRNA modification GTPase TrmE [Lactobacillus amylolyticus DSM 11664] gi|295064514|gb|EFG55441.1| tRNA modification GTPase TrmE [Lactobacillus amylolyticus DSM 11664] Length = 461 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 58/205 (28%), Positives = 100/205 (48%), Gaps = 13/205 (6%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AIVG PNVGKS+L N L + A+V + G TRD L +N V ++DTAGI + Sbjct: 228 AIVGRPNVGKSSLLNYLTQSDKAIVTDVAGTTRDTLEEYISVNSVPLKLIDTAGIHHTDD 287 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD--T 123 + K ++++ A+ +A L+L L+D +T D T +N II+ NKMD Sbjct: 288 -KVEKIGVERSQKALKQADLVLLLLDGSQELTDEDK--TLLKETENKKRIIILNKMDLGQ 344 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 ++ + ++ E+V S + EL +I K+F N +++ N+R Sbjct: 345 KLTAKGMHDSTG---SEVVSTSILKETNLDELEDLIKKMFFSGITNSNDQIMVTNQR--- 398 Query: 184 SPKENITSEGKSSVKNISKPLRIAV 208 + + ++ K ++++ K + V Sbjct: 399 --QAGLLAKAKKQLQDVVKAVEDGV 421 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 69/123 (56%), Gaps = 5/123 (4%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 L A+VGRPNVGKS+L+N L ++ + +G TRD++ + + P+++ DTAG+ Sbjct: 225 LATAIVGRPNVGKSSLLNYLTQSDKAIVTDVAGTTRDTLEEYISVNSVPLKLIDTAGIHH 284 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 + +E+ V++S ++++ + ++LLD + +D ++ N ++ LNK Sbjct: 285 TD---DKVEKIGVERSQKALKQADLVLLLLDGSQELTDEDKTLLKETENKKRIII--LNK 339 Query: 324 WDM 326 D+ Sbjct: 340 MDL 342 >gi|296104241|ref|YP_003614387.1| GTP-binding protein Era [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058700|gb|ADF63438.1| GTP-binding protein Era [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 301 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 50/176 (28%), Positives = 85/176 (48%), Gaps = 6/176 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N L+ +K+++ TR R+ G VDT G+ + Sbjct: 11 IAIVGRPNVGKSTLLNNLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN +I + L++F+++ TP D + + LR P+I+ NK+D Sbjct: 71 KRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLRDGKTPVILAVNKVDNV 129 Query: 125 IAQRNF-----YEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 + + + ++F +IV +SAE L + ++ K + + P + I Sbjct: 130 QEKADLLPHLQWLGSQMNFLDIVPLSAETGLNVDTIAGIVRKHLPEATHHFPEDYI 185 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 43/134 (32%), Positives = 70/134 (52%), Gaps = 5/134 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS-VSISWNWKNHPIEIFDTAGMRKP 264 IA+VGRPNVGKSTL+N LLG +T ++ TR V I I + DT G+ Sbjct: 11 IAIVGRPNVGKSTLLNNLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYV-DTPGLHME 69 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 + ++ + K + S+ E I +++ T + D +++ + + V+LA+NK Sbjct: 70 EK--RAINRLMNKAASSSIGDVELVIFVVEGT-RWTPDDEMVLNKLRDGKTPVILAVNKV 126 Query: 325 DMVSDKLNLLQDLR 338 D V +K +LL L+ Sbjct: 127 DNVQEKADLLPHLQ 140 >gi|224475497|ref|YP_002633103.1| tRNA modification GTPase TrmE [Staphylococcus carnosus subsp. carnosus TM300] gi|222420104|emb|CAL26918.1| putative tRNA modification GTPase TrmE [Staphylococcus carnosus subsp. carnosus TM300] Length = 460 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 44/116 (37%), Positives = 67/116 (57%), Gaps = 3/116 (2%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PNVGKS++ N L++ A+V G TRD L + GV +VDTAGI + ++ Sbjct: 227 IVGKPNVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRETEDI 286 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + K +++ A++EA LILF+++ G+T D + + KN II+ NK D Sbjct: 287 -VEKIGVERSRKALSEADLILFVLNYNEGLTEEDRKLYEVI--KNEDAIIIVNKTD 339 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 45/170 (26%), Positives = 87/170 (51%), Gaps = 14/170 (8%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L +VG+PNVGKS+++N L+ N+ + +G TRD + N + P+ + D Sbjct: 217 KIMREGLSTVIVGKPNVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVD 276 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ I E + V++S +++ + + +L+ ++D ++ + + N Sbjct: 277 TAGIRETEDIVEKI---GVERSRKALSEADLILFVLNYNEGLTEEDRKLYEVIKN--EDA 331 Query: 318 VLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDL 367 ++ +NK D L Q L +K + +GD+ + S EG+D L Sbjct: 332 IIIVNKTD-------LEQHLDLDEVKAM--VGDMPVIETSMLKQEGIDQL 372 >gi|53720034|ref|YP_109020.1| GTP-binding protein Era [Burkholderia pseudomallei K96243] gi|53725350|ref|YP_102340.1| GTP-binding protein Era [Burkholderia mallei ATCC 23344] gi|76810513|ref|YP_334275.1| GTP-binding protein Era [Burkholderia pseudomallei 1710b] gi|124386404|ref|YP_001028765.1| GTP-binding protein Era [Burkholderia mallei NCTC 10229] gi|126449368|ref|YP_001081327.1| GTP-binding protein Era [Burkholderia mallei NCTC 10247] gi|126451757|ref|YP_001067086.1| GTP-binding protein Era [Burkholderia pseudomallei 1106a] gi|167720557|ref|ZP_02403793.1| GTP-binding protein Era [Burkholderia pseudomallei DM98] gi|167739550|ref|ZP_02412324.1| GTP-binding protein Era [Burkholderia pseudomallei 14] gi|167816751|ref|ZP_02448431.1| GTP-binding protein Era [Burkholderia pseudomallei 91] gi|167825158|ref|ZP_02456629.1| GTP-binding protein Era [Burkholderia pseudomallei 9] gi|167846655|ref|ZP_02472163.1| GTP-binding protein Era [Burkholderia pseudomallei B7210] gi|167895243|ref|ZP_02482645.1| GTP-binding protein Era [Burkholderia pseudomallei 7894] gi|167911875|ref|ZP_02498966.1| GTP-binding protein Era [Burkholderia pseudomallei 112] gi|167919872|ref|ZP_02506963.1| GTP-binding protein Era [Burkholderia pseudomallei BCC215] gi|237813194|ref|YP_002897645.1| GTP-binding protein Era [Burkholderia pseudomallei MSHR346] gi|254177634|ref|ZP_04884289.1| GTP-binding protein Era [Burkholderia mallei ATCC 10399] gi|254184211|ref|ZP_04890801.1| GTP-binding protein Era [Burkholderia pseudomallei 1655] gi|254191246|ref|ZP_04897750.1| GTP-binding protein Era [Burkholderia pseudomallei Pasteur 52237] gi|254259591|ref|ZP_04950645.1| GTP-binding protein Era [Burkholderia pseudomallei 1710a] gi|254357707|ref|ZP_04973980.1| GTP-binding protein Era [Burkholderia mallei 2002721280] gi|52210448|emb|CAH36431.1| GTP-binding protein Era [Burkholderia pseudomallei K96243] gi|52428773|gb|AAU49366.1| GTP-binding protein Era [Burkholderia mallei ATCC 23344] gi|76579966|gb|ABA49441.1| GTP-binding protein Era [Burkholderia pseudomallei 1710b] gi|124294424|gb|ABN03693.1| GTP-binding protein Era [Burkholderia mallei NCTC 10229] gi|126225399|gb|ABN88939.1| GTP-binding protein Era [Burkholderia pseudomallei 1106a] gi|126242238|gb|ABO05331.1| GTP-binding protein Era [Burkholderia mallei NCTC 10247] gi|148026834|gb|EDK84855.1| GTP-binding protein Era [Burkholderia mallei 2002721280] gi|157938918|gb|EDO94588.1| GTP-binding protein Era [Burkholderia pseudomallei Pasteur 52237] gi|160698673|gb|EDP88643.1| GTP-binding protein Era [Burkholderia mallei ATCC 10399] gi|184214742|gb|EDU11785.1| GTP-binding protein Era [Burkholderia pseudomallei 1655] gi|237503411|gb|ACQ95729.1| GTP-binding protein Era [Burkholderia pseudomallei MSHR346] gi|254218280|gb|EET07664.1| GTP-binding protein Era [Burkholderia pseudomallei 1710a] Length = 299 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 47/150 (31%), Positives = 79/150 (52%), Gaps = 9/150 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N LV +K+++ TR R+ G ++ + VDT G Sbjct: 14 IAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRITGIHTLDDAQYIFVDTPGFQTRH 73 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + ++ + +N + ILF+I++ P D + + P ++V+NK+D R Sbjct: 74 STALNRSLNRAVTSTLTSVDAILFVIEA-GRFGPDDQKVLDLI-PPGTPTLLVANKLD-R 130 Query: 125 IAQRN-----FYEIYSL-DFKEIVEISAEH 148 ++ ++ F ++ L +F EIV +SA+H Sbjct: 131 VSDKDTLYPFFQKMGGLREFAEIVPLSAKH 160 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 40/128 (31%), Positives = 66/128 (51%), Gaps = 4/128 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA+VGRPNVGKSTL+N L+G +T ++ TR ++ + DT G + + Sbjct: 14 IAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRITGIHTLDDAQYIFVDTPGFQ--T 71 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 R + +L +++ +++ S T I+ + F D +++D + G +L NK D Sbjct: 72 RHSTAL-NRSLNRAVTSTLTSVDAILFVIEAGRFGPDDQKVLD-LIPPGTPTLLVANKLD 129 Query: 326 MVSDKLNL 333 VSDK L Sbjct: 130 RVSDKDTL 137 >gi|322516820|ref|ZP_08069722.1| tRNA modification GTPase TrmE [Streptococcus vestibularis ATCC 49124] gi|322124657|gb|EFX96121.1| tRNA modification GTPase TrmE [Streptococcus vestibularis ATCC 49124] Length = 456 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 42/140 (30%), Positives = 79/140 (56%), Gaps = 6/140 (4%) Query: 187 ENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISW 246 EN+ + K K + + L A++GRPNVGKS+L+N LL + + G TRD + Sbjct: 207 ENLLATAKRG-KILREGLSTAIIGRPNVGKSSLLNNLLREEKAIVTDIEGTTRDVIEEYV 265 Query: 247 NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRI 306 N K P+++ DTAG+R + E + V++S +++ + +++L+++ P +QD + Sbjct: 266 NIKGVPLKLIDTAGIRDTDDVVEKI---GVERSKKALEEADLVLLVLNSSEPLTEQDRTL 322 Query: 307 VDSVFNTGHAVVLALNKWDM 326 ++ N+ ++ LNK D+ Sbjct: 323 LEISKNSNR--IILLNKTDL 340 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 43/117 (36%), Positives = 68/117 (58%), Gaps = 3/117 (2%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L++++ A+V + G TRD + I GV ++DTAGI D + Sbjct: 226 AIIGRPNVGKSSLLNNLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRDTDD 285 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + K ++++ A+ EA L+L +++S +T D + KN II+ NK D Sbjct: 286 V-VEKIGVERSKKALEEADLVLLVLNSSEPLTEQDRTLLEI--SKNSNRIILLNKTD 339 >gi|289434744|ref|YP_003464616.1| GTP-binding protein Era [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170988|emb|CBH27530.1| GTP-binding protein Era [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|313633219|gb|EFS00091.1| GTP-binding protein Era [Listeria seeligeri FSL N1-067] Length = 301 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 49/150 (32%), Positives = 80/150 (53%), Gaps = 13/150 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N ++ +K+A++ + TR+++ G + +DT GI K Sbjct: 10 VAIVGRPNVGKSTLLNHIIGQKIAIMSDKAQTTRNKVQGVYTTDESQIIFIDTPGIHKPK 69 Query: 65 NCSIAKQMNDQTELAIN---EAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 + K + ++A+N E LI F+ID+ G D I L+ P+ ++ NK+ Sbjct: 70 H----KLGDFMVKIALNTFQEVDLIYFVIDASTGFGRGDEFIIEKLKNVQTPVFLLINKI 125 Query: 122 DTRIAQRNFYEIYS-----LDFKEIVEISA 146 D I+ +++ LDF+EI+ ISA Sbjct: 126 DL-ISPEELFKLIEQYRELLDFEEIIPISA 154 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 69/132 (52%), Gaps = 6/132 (4%) Query: 200 ISKPLR---IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIF 256 +S+P + +A+VGRPNVGKSTL+N ++G + ++ TR+ V + I Sbjct: 1 MSEPFKSGFVAIVGRPNVGKSTLLNHIIGQKIAIMSDKAQTTRNKVQGVYTTDESQIIFI 60 Query: 257 DTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHA 316 DT G+ KP L VK ++ + + + ++DA+ F + D I++ + N Sbjct: 61 DTPGIHKPKH---KLGDFMVKIALNTFQEVDLIYFVIDASTGFGRGDEFIIEKLKNVQTP 117 Query: 317 VVLALNKWDMVS 328 V L +NK D++S Sbjct: 118 VFLLINKIDLIS 129 >gi|302038214|ref|YP_003798536.1| GTP-binding protein Era-like protein [Candidatus Nitrospira defluvii] gi|300606278|emb|CBK42611.1| GTP-binding protein Era homolog [Candidatus Nitrospira defluvii] Length = 294 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 51/172 (29%), Positives = 91/172 (52%), Gaps = 13/172 (7%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 ++AI+G NVGKSTL NRL+K+K+A+V + P TR R+ G A + G +DT G + Sbjct: 5 SVAIIGRSNVGKSTLLNRLLKEKIAIVSDKPQTTRTRILGVAHVEGAQIVFLDTPGFHEP 64 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLR----KKNIPIIIVSN 119 + + ++M T ++A ++ ++++ A P D A+ ++ K+ P+++V N Sbjct: 65 HHL-LNRRMVRTTLDTFDDADVLYVVVEATAQPGPGDLAVIEHVKQAVAKQARPVVLVIN 123 Query: 120 KMD----TRI--AQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQ 165 K+D +R+ + I+ + EIV +SAE L SV + + Sbjct: 124 KVDLVNKSRLLPLMEQYLRIFP--WTEIVPVSAETADNVDRLLSVTVSLLAE 173 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 36/126 (28%), Positives = 63/126 (50%), Gaps = 7/126 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GR NVGKSTL+NRLL + + TR + + + I DT G +P Sbjct: 6 VAIIGRSNVGKSTLLNRLLKEKIAIVSDKPQTTRTRILGVAHVEGAQIVFLDTPGFHEPH 65 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVD----SVFNTGHAVVLAL 321 + L ++ V+ ++ + + V+++AT DL +++ +V VVL + Sbjct: 66 HL---LNRRMVRTTLDTFDDADVLYVVVEATAQPGPGDLAVIEHVKQAVAKQARPVVLVI 122 Query: 322 NKWDMV 327 NK D+V Sbjct: 123 NKVDLV 128 >gi|329736122|gb|EGG72395.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis VCU045] Length = 459 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 41/127 (32%), Positives = 72/127 (56%), Gaps = 1/127 (0%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PNVGKS++ N L++ A+V G TRD L + GV +VDTAGI D ++ Sbjct: 226 IVGRPNVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRDTEDI 285 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 + K +++ A++EA LILF++++ +T D + ++ +++ +II ++ R+ Sbjct: 286 -VEKIGVERSRNALSEADLILFVLNNNEPLTEDDQTLFEVIKNEDVIVIINKTDLEQRLD 344 Query: 127 QRNFYEI 133 E+ Sbjct: 345 VSELREM 351 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 51/198 (25%), Positives = 100/198 (50%), Gaps = 16/198 (8%) Query: 174 MIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGS 233 ++E +KR +E + + + + + + + L +VGRPNVGKS+++N L+ N+ + Sbjct: 194 LLEQSKRIKEEINQLLETGAQGKI--MREGLSTVIVGRPNVGKSSMLNNLIQDNKAIVTE 251 Query: 234 QSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLL 293 +G TRD + N + P+ + DTAG+R I E + V++S ++ + + +L Sbjct: 252 VAGTTRDVLEEYVNVRGVPLRLVDTAGIRDTEDIVEKI---GVERSRNALSEADLILFVL 308 Query: 294 DATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYI 353 + P + D + + + N V++ +NK D L Q L ++ + IGD+ + Sbjct: 309 NNNEPLTEDDQTLFEVIKN--EDVIVIINKTD-------LEQRLDVSELREM--IGDMPL 357 Query: 354 NTISGRTGEGLDDLMVSV 371 S EG+D+L + + Sbjct: 358 IQTSMLKQEGIDELEIQI 375 >gi|327470938|gb|EGF16394.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis SK330] Length = 457 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 46/137 (33%), Positives = 83/137 (60%), Gaps = 7/137 (5%) Query: 207 AVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSR 266 A++GRPNVGKS+L+N LL ++ + G TRD + N K P+++ DTAG+R+ Sbjct: 227 AIIGRPNVGKSSLLNNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDD 286 Query: 267 ITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 + +EQ V++S ++++ + +++L+ + P QD ++++ + + +VL LNK D+ Sbjct: 287 L---VEQIGVERSKKALQEADLVLLVLNVSEPLTDQDKQLLE-ISQDSNRIVL-LNKTDL 341 Query: 327 VSDKLNLLQDLRTKAIK 343 +K+ L Q L T IK Sbjct: 342 -EEKIELDQ-LPTDVIK 356 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 85/161 (52%), Gaps = 14/161 (8%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+++ A+V + G TRD + I GV ++DTAGI + + Sbjct: 227 AIIGRPNVGKSSLLNNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDD 286 Query: 66 CSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +Q+ ++++ A+ EA L+L +++ +T D + + N I++ NK D Sbjct: 287 --LVEQIGVERSKKALQEADLVLLVLNVSEPLTDQDKQLLEISQDSN--RIVLLNKTD-- 340 Query: 125 IAQRNFYEIYSLDF--KEIVEISAEHDLGTSELHSVIFKIF 163 E LD ++++IS H+ ++ I ++F Sbjct: 341 -----LEEKIELDQLPTDVIKISVLHNQNIDKIEERINQLF 376 >gi|228477467|ref|ZP_04062103.1| tRNA modification GTPase TrmE [Streptococcus salivarius SK126] gi|228250902|gb|EEK10090.1| tRNA modification GTPase TrmE [Streptococcus salivarius SK126] Length = 456 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 42/140 (30%), Positives = 79/140 (56%), Gaps = 6/140 (4%) Query: 187 ENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISW 246 EN+ + K K + + L A++GRPNVGKS+L+N LL + + G TRD + Sbjct: 207 ENLLATAKRG-KILREGLSTAIIGRPNVGKSSLLNNLLREEKAIVTDIEGTTRDVIEEYV 265 Query: 247 NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRI 306 N K P+++ DTAG+R + E + V++S +++ + +++L+++ P +QD + Sbjct: 266 NIKGVPLKLIDTAGIRDTDDVVEKI---GVERSKKALEEADLVLLVLNSSEPLTEQDRTL 322 Query: 307 VDSVFNTGHAVVLALNKWDM 326 ++ N+ ++ LNK D+ Sbjct: 323 LEISKNSNR--IILLNKTDL 340 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 43/117 (36%), Positives = 68/117 (58%), Gaps = 3/117 (2%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L++++ A+V + G TRD + I GV ++DTAGI D + Sbjct: 226 AIIGRPNVGKSSLLNNLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRDTDD 285 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + K ++++ A+ EA L+L +++S +T D + KN II+ NK D Sbjct: 286 V-VEKIGVERSKKALEEADLVLLVLNSSEPLTEQDRTLLEI--SKNSNRIILLNKTD 339 >gi|197120417|ref|YP_002140844.1| tRNA modification GTPase TrmE [Geobacter bemidjiensis Bem] gi|197089777|gb|ACH41048.1| tRNA (5-carboxymethylaminomethyl-2-thio-U34) modification GTPase [Geobacter bemidjiensis Bem] Length = 455 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 58/184 (31%), Positives = 86/184 (46%), Gaps = 23/184 (12%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 ++ I G PNVGKS+L N L+K+K A+V + PG TRD + ING+ ++DTAGI Sbjct: 222 SVVIAGKPNVGKSSLLNTLLKEKRAIVTSVPGTTRDLIEEVVNINGLPVKLLDTAGI--- 278 Query: 64 KNCSIAKQMNDQTELA--------INEAHLILFLIDSKAGITPYDHAITSFLRKKNIPII 115 ++ DQ E I +A L+LF+ID + D AI + K+ I Sbjct: 279 ------RESEDQVEQEGVRLSLDRIPKADLVLFVIDGSSAFGDEDAAILEAIGSKS--CI 330 Query: 116 IVSNKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 +V NK D +A ++ S +V IS G +L I F + E + Sbjct: 331 VVRNKSDLPLA----VDLPSGCSAPVVAISTHTGDGVPQLRDAITNAFMHGHAIDGREFV 386 Query: 176 ENNK 179 +K Sbjct: 387 ALSK 390 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 68/121 (56%), Gaps = 5/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 + + G+PNVGKS+L+N LL R + S G TRD + N P+++ DTAG+R+ Sbjct: 223 VVIAGKPNVGKSSLLNTLLKEKRAIVTSVPGTTRDLIEEVVNINGLPVKLLDTAGIRESE 282 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + +EQ+ V+ S+ + + + ++D + F +D I++++ + + ++ NK D Sbjct: 283 ---DQVEQEGVRLSLDRIPKADLVLFVIDGSSAFGDEDAAILEAIGS--KSCIVVRNKSD 337 Query: 326 M 326 + Sbjct: 338 L 338 >gi|56963446|ref|YP_175177.1| Era, Era/TrmE family GTP-binding protein [Bacillus clausii KSM-K16] gi|81822138|sp|Q5WHD9|ERA_BACSK RecName: Full=GTPase Era gi|56909689|dbj|BAD64216.1| Era/TrmE family GTP-binding protein Era [Bacillus clausii KSM-K16] Length = 303 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 80/147 (54%), Gaps = 7/147 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 ++I+G PNVGKSTL NR++ +K+A++ + P TR+++ G + +DT GI K Sbjct: 13 VSIIGRPNVGKSTLLNRVIGQKIAIMSDKPQTTRNKVQGVLTRDDAQLVFMDTPGIHKPK 72 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + M + + E LIL+++++ A P + I L++ P+ ++ NK+D + Sbjct: 73 H-RLGDFMMKVAKNTLREVDLILYVVEADAKFGPGEQYIIERLQETKTPVFLLINKID-K 130 Query: 125 IAQRNFYEIYSL-----DFKEIVEISA 146 ++ ++ L F EI+ ISA Sbjct: 131 VSPEELLKVIDLYKDRYPFAEIIPISA 157 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 3/123 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 ++++GRPNVGKSTL+NR++G + + TR+ V + + DT G+ KP Sbjct: 13 VSIIGRPNVGKSTLLNRVIGQKIAIMSDKPQTTRNKVQGVLTRDDAQLVFMDTPGIHKPK 72 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 K K ++ R + + +++A F + I++ + T V L +NK D Sbjct: 73 HRLGDFMMKVAKNTL---REVDLILYVVEADAKFGPGEQYIIERLQETKTPVFLLINKID 129 Query: 326 MVS 328 VS Sbjct: 130 KVS 132 >gi|327440936|dbj|BAK17301.1| GTPase [Solibacillus silvestris StLB046] Length = 304 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 54/184 (29%), Positives = 88/184 (47%), Gaps = 15/184 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 ++IVG PNVGKST NR++ +K+A++ + P TR+++ G +DT GI K Sbjct: 12 VSIVGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKVQGVLTQQNSQTIFIDTPGIHKPK 71 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + + M + A+ E +I+F+++++ I D I L+ P+ ++ NK+D Sbjct: 72 H-KLGEFMLKTSRNALREVDVIMFMVNAEQAIGKGDEFIIELLQGNKTPVFLIINKIDL- 129 Query: 125 IAQRNFYEIYS-----LDFKEIVEISAEHDLGTSELHSVIFKIF---KQKYP-----NHP 171 + +I DF EI+ ISA L S I K Q YP +HP Sbjct: 130 VHPDELVKIIDSYKDKFDFAEIIPISALQGNNVENLLSTIEKYLPEGPQYYPADQVTDHP 189 Query: 172 LEMI 175 I Sbjct: 190 ERFI 193 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +++VGRPNVGKST +NR++G + + TR+ V +N DT G+ KP Sbjct: 12 VSIVGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKVQGVLTQQNSQTIFIDTPGIHKPK 71 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + +K S ++R + + +++A K D I++ + V L +NK D Sbjct: 72 H---KLGEFMLKTSRNALREVDVIMFMVNAEQAIGKGDEFIIELLQGNKTPVFLIINKID 128 Query: 326 MV 327 +V Sbjct: 129 LV 130 >gi|126439282|ref|YP_001059799.1| GTP-binding protein Era [Burkholderia pseudomallei 668] gi|126218775|gb|ABN82281.1| GTP-binding protein Era [Burkholderia pseudomallei 668] Length = 299 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 47/150 (31%), Positives = 79/150 (52%), Gaps = 9/150 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N LV +K+++ TR R+ G ++ + VDT G Sbjct: 14 IAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRITGIHTLDDAQYIFVDTPGFQTRH 73 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + ++ + +N + ILF+I++ P D + + P ++V+NK+D R Sbjct: 74 STALNRSLNRAVTSTLTSVDAILFVIEA-GRFGPDDQKVLDLI-PPGTPTLLVANKLD-R 130 Query: 125 IAQRN-----FYEIYSL-DFKEIVEISAEH 148 ++ ++ F ++ L +F EIV +SA+H Sbjct: 131 VSDKDTLYPFFQKMGGLREFAEIVPLSAKH 160 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 40/128 (31%), Positives = 66/128 (51%), Gaps = 4/128 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA+VGRPNVGKSTL+N L+G +T ++ TR ++ + DT G + + Sbjct: 14 IAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRITGIHTLDDAQYIFVDTPGFQ--T 71 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 R + +L +++ +++ S T I+ + F D +++D + G +L NK D Sbjct: 72 RHSTAL-NRSLNRAVTSTLTSVDAILFVIEAGRFGPDDQKVLD-LIPPGTPTLLVANKLD 129 Query: 326 MVSDKLNL 333 VSDK L Sbjct: 130 RVSDKDTL 137 >gi|223043424|ref|ZP_03613470.1| tRNA modification GTPase TrmE [Staphylococcus capitis SK14] gi|314934963|ref|ZP_07842322.1| tRNA modification GTPase TrmE [Staphylococcus caprae C87] gi|222443213|gb|EEE49312.1| tRNA modification GTPase TrmE [Staphylococcus capitis SK14] gi|313652893|gb|EFS16656.1| tRNA modification GTPase TrmE [Staphylococcus caprae C87] Length = 459 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 40/119 (33%), Positives = 70/119 (58%), Gaps = 1/119 (0%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PNVGKS++ N L++ A+V G TRD L + GV +VDTAGI D ++ Sbjct: 226 IVGRPNVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRDTEDI 285 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 + K +++ A++EA LILF++++ +T D + ++ +++ +II ++ R+ Sbjct: 286 -VEKIGVERSRKALSEADLILFVLNNNEPLTEDDQTLYEVVKNEDVIVIINKTDLEPRL 343 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 49/177 (27%), Positives = 90/177 (50%), Gaps = 14/177 (7%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L +VGRPNVGKS+++N L+ N+ + +G TRD + N + P+ + D Sbjct: 216 KIMREGLSTVIVGRPNVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVD 275 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R I E + V++S +++ + + +L+ P + D + + V N V Sbjct: 276 TAGIRDTEDIVEKI---GVERSRKALSEADLILFVLNNNEPLTEDDQTLYEVVKN--EDV 330 Query: 318 VLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEI 374 ++ +NK D L L +K + IGD+ + S EG+D+L + + ++ Sbjct: 331 IVIINKTD-------LEPRLDIDEVKEM--IGDMPLIQTSMLKQEGIDELEIQIRDL 378 >gi|170593343|ref|XP_001901424.1| tRNA modification GTPase TrmE family protein [Brugia malayi] gi|158591491|gb|EDP30104.1| tRNA modification GTPase TrmE family protein [Brugia malayi] Length = 1828 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 58/173 (33%), Positives = 95/173 (54%), Gaps = 21/173 (12%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 I++ LRI ++G+ NVGKS+L N + + + + G TRDS+ I+ + P+ I DTA Sbjct: 1590 INEGLRIVILGQTNVGKSSLFNHMANRDMAIVSNIEGTTRDSLEITVQLSSVPVTIIDTA 1649 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATI--PFEKQDLRIVDSVFNTGH-- 315 G+R+ +SLE + ++++++ + IV+LD++I FE+ D+R V S N Sbjct: 1650 GIREIP--LDSLEAEGIQRTLRRAVEADIIIVVLDSSICKDFER-DVRSVLSWCNLKKDT 1706 Query: 316 AVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLM 368 V +ALNK D+ S N+L L AI +IS +GEG+ L+ Sbjct: 1707 PVFVALNKCDLRSVPNNIL--LPWPAI------------SISCISGEGISSLL 1745 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 43/124 (34%), Positives = 65/124 (52%), Gaps = 5/124 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 I I+G NVGKS+LFN + + MA+V N G TRD L ++ V I+DTAGI + Sbjct: 1596 IVILGQTNVGKSSLFNHMANRDMAIVSNIEGTTRDSLEITVQLSSVPVTIIDTAGIREIP 1655 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLR----KKNIPIIIVSNK 120 S+ + +T EA +I+ ++DS ++ + S L KK+ P+ + NK Sbjct: 1656 LDSLEAEGIQRTLRRAVEADIIIVVLDSSI-CKDFERDVRSVLSWCNLKKDTPVFVALNK 1714 Query: 121 MDTR 124 D R Sbjct: 1715 CDLR 1718 >gi|254251057|ref|ZP_04944375.1| hypothetical protein BDAG_00227 [Burkholderia dolosa AUO158] gi|124893666|gb|EAY67546.1| hypothetical protein BDAG_00227 [Burkholderia dolosa AUO158] Length = 495 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 51/188 (27%), Positives = 88/188 (46%), Gaps = 14/188 (7%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + L + + G+PNVGKS+L+N L G + +G TRD V+ + + P+ I DTA Sbjct: 254 LREGLSVVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTA 313 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R+ + +E+ + ++ + + + LLD+ D RI + F G VV Sbjct: 314 GLRETD---DEVERIGIARTWSEIERADVVLHLLDSRTGMTADDERIA-ARFPAGVPVVR 369 Query: 320 ALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWK 379 LNK D+ +++ GD+ +S + G+G+D L +L I W+ Sbjct: 370 VLNKTDLTG---------VPACVEHPAAEGDLTDVHLSAKRGDGIDLLRAELLRIAG-WQ 419 Query: 380 TRITTSYL 387 YL Sbjct: 420 AGAEGVYL 427 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 39/127 (30%), Positives = 66/127 (51%), Gaps = 18/127 (14%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 ++ + G PNVGKS+L N L ++A+V G TRD++ + G+ +I+DTAG+ Sbjct: 259 SVVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGL--- 315 Query: 64 KNCSIAKQMNDQTEL--------AINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPII 115 ++ +D+ E I A ++L L+DS+ G+T D I + +P++ Sbjct: 316 ------RETDDEVERIGIARTWSEIERADVVLHLLDSRTGMTADDERIAARF-PAGVPVV 368 Query: 116 IVSNKMD 122 V NK D Sbjct: 369 RVLNKTD 375 >gi|332678448|gb|AEE87577.1| GTP-binding protein Era [Francisella cf. novicida Fx1] Length = 297 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 52/163 (31%), Positives = 82/163 (50%), Gaps = 5/163 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 I+I+G PNVGKSTL N ++K K+++ P TR ++ G + G F VDT GI + Sbjct: 7 ISIIGRPNVGKSTLLNNILKYKVSITSRKPQTTRHQITGIKTLGGTQFIYVDTPGIHIKE 66 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I K MN + +ILF+++ T + I L+ I I +V NK+D + Sbjct: 67 PKAINKFMNKAATTMFKDVDVILFVVEM-GKWTELEDNIVEKLKHSEIRIFLVVNKVDKK 125 Query: 125 IAQRNFYEIYS----LDFKEIVEISAEHDLGTSELHSVIFKIF 163 + I S L F +++ +SA+ +EL S I K+ Sbjct: 126 KSLEAAMFIESIKEKLSFYDVIYVSAKQGHNINELESRIEKLL 168 Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust. Identities = 17/38 (44%), Positives = 26/38 (68%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 I+++GRPNVGKSTL+N +L Y +T + TR ++ Sbjct: 7 ISIIGRPNVGKSTLLNNILKYKVSITSRKPQTTRHQIT 44 >gi|294784965|ref|ZP_06750253.1| GTP-binding protein Era [Fusobacterium sp. 3_1_27] gi|294486679|gb|EFG34041.1| GTP-binding protein Era [Fusobacterium sp. 3_1_27] Length = 298 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 43/126 (34%), Positives = 73/126 (57%), Gaps = 5/126 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IAVVGRPNVGKSTLIN+L+ + ++G TRD++ N+K++ DT G+ KP Sbjct: 6 IAVVGRPNVGKSTLINKLVSGKVAIVSDKAGTTRDNIKGILNFKDNQYIFIDTPGIHKPQ 65 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSV-FNTGHA-VVLALNK 323 + L + +++ ++ + + L+DA+ P D+ ++D + NT +L +NK Sbjct: 66 HL---LGEYMTNIAVKILKDVDIILFLIDASKPIGTGDMFVMDRINENTKKKPKILLVNK 122 Query: 324 WDMVSD 329 D++SD Sbjct: 123 VDLISD 128 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/120 (35%), Positives = 65/120 (54%), Gaps = 3/120 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTL N+LV K+A+V + G TRD + G + +DT GI + Sbjct: 6 IAVVGRPNVGKSTLINKLVSGKVAIVSDKAGTTRDNIKGILNFKDNQYIFIDTPGIHKPQ 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRK--KNIPIIIVSNKMD 122 + + + M + + + +ILFLID+ I D + + + K P I++ NK+D Sbjct: 66 HL-LGEYMTNIAVKILKDVDIILFLIDASKPIGTGDMFVMDRINENTKKKPKILLVNKVD 124 >gi|116748319|ref|YP_845006.1| GTP-binding protein Era [Syntrophobacter fumaroxidans MPOB] gi|116697383|gb|ABK16571.1| GTP-binding protein Era [Syntrophobacter fumaroxidans MPOB] Length = 307 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 51/176 (28%), Positives = 83/176 (47%), Gaps = 9/176 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A++GAPNVGKSTL NR +++K+++ P TR+R+ G G +DT GI K Sbjct: 14 VALIGAPNVGKSTLLNRFLREKISITAPKPQTTRNRILGILTEPGFQIVFMDTPGIHRAK 73 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + + D + EA + FLI+ + I L + + P+I+V NK+D Sbjct: 74 D-RFNRVLVDTALATLGEADAVCFLIEIPEPDPEINDYILENLGRIDTPVILVINKIDAL 132 Query: 125 IAQRNFYEIYS-----LDFKEIVEISAEHDLGTSELHSVIFKIFK---QKYPNHPL 172 + + F +V +SA GT EL + + + + Q YP L Sbjct: 133 ADKSRLLPLIEKYRGRHSFHAVVPVSALQGEGTDELMTELVALLQEGPQYYPEDHL 188 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 42/172 (24%), Positives = 80/172 (46%), Gaps = 13/172 (7%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++G PNVGKSTL+NR L +T + TR+ + I DT G+ Sbjct: 14 VALIGAPNVGKSTLLNRFLREKISITAPKPQTTRNRILGILTEPGFQIVFMDTPGIH--- 70 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 R + + V ++ ++ + L++ P + + I++++ V+L +NK D Sbjct: 71 RAKDRFNRVLVDTALATLGEADAVCFLIEIPEPDPEINDYILENLGRIDTPVILVINKID 130 Query: 326 MVSDK---LNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEI 374 ++DK L L++ R + + + +S GEG D+LM ++ + Sbjct: 131 ALADKSRLLPLIEKYRGRHSFHA-------VVPVSALQGEGTDELMTELVAL 175 >gi|194467792|ref|ZP_03073778.1| GTP-binding protein Era [Lactobacillus reuteri 100-23] gi|194452645|gb|EDX41543.1| GTP-binding protein Era [Lactobacillus reuteri 100-23] Length = 301 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 59/180 (32%), Positives = 88/180 (48%), Gaps = 15/180 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKSTL N +V +K+A++ N TR+++ G +DT GI Sbjct: 11 VAIIGRPNVGKSTLLNYVVGQKVAIMSNVAQTTRNKIQGIYTSPEAQIIFIDTPGIHK-P 69 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + M A++E +LF++ + P D I L+K N PI +V NK+D + Sbjct: 70 STKLGDFMEKSAMSALDEVDAVLFVVSATEKRGPGDDFIIERLKKVNQPIFLVVNKID-Q 128 Query: 125 IAQRNFYEIY-----SLDFKEIVEISAEHDLGTSELHSVIFKIF---KQKYP-----NHP 171 I + EI +L FK +V ISA + L + I KI Q YP +HP Sbjct: 129 INPNDLPEIVDQYKDTLPFKGVVPISALQGNNVNNLINDIIKILPNGPQYYPADQVSDHP 188 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/178 (24%), Positives = 85/178 (47%), Gaps = 26/178 (14%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKSTL+N ++G + + + TR+ + + I DT G+ KPS Sbjct: 11 VAIIGRPNVGKSTLLNYVVGQKVAIMSNVAQTTRNKIQGIYTSPEAQIIFIDTPGIHKPS 70 Query: 266 -RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 ++ + +E K +M ++ + + ++ AT D I++ + + L +NK Sbjct: 71 TKLGDFME----KSAMSALDEVDAVLFVVSATEKRGPGDDFIIERLKKVNQPIFLVVNKI 126 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINT--------ISGRTGEGLDDLMVSVLEI 374 D ++ +LP+I D Y +T IS G +++L+ +++I Sbjct: 127 DQINP-------------NDLPEIVDQYKDTLPFKGVVPISALQGNNVNNLINDIIKI 171 >gi|288925846|ref|ZP_06419777.1| tRNA modification GTPase TrmE [Prevotella buccae D17] gi|288337501|gb|EFC75856.1| tRNA modification GTPase TrmE [Prevotella buccae D17] Length = 512 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 42/118 (35%), Positives = 70/118 (59%), Gaps = 4/118 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG NVGKSTL NRL+ ++ A+V + G TRD + +INGV F +DTAGI + Sbjct: 228 VAIVGKTNVGKSTLLNRLLHEERAIVSDIHGTTRDTIEDTTLINGVAFRFIDTAGIRKTE 287 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + + + D+T I++A +++++ID+ + + + K +I+V NK+D Sbjct: 288 D-EVERIGIDRTYQKIDQATVVVWMIDTSPSALEQEDMKSKCIGKN---VILVHNKVD 341 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 62/123 (50%), Gaps = 8/123 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VG+ NVGKSTL+NRLL R + G TRD++ + DTAG+RK Sbjct: 228 VAIVGKTNVGKSTLLNRLLHEERAIVSDIHGTTRDTIEDTTLINGVAFRFIDTAGIRKTE 287 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDAT-IPFEKQDLRIVDSVFNTGHAVVLALNKW 324 + +E+ + ++ Q + + ++D + E++D++ G V+L NK Sbjct: 288 ---DEVERIGIDRTYQKIDQATVVVWMIDTSPSALEQEDMK----SKCIGKNVILVHNKV 340 Query: 325 DMV 327 D+ Sbjct: 341 DIA 343 >gi|294660633|ref|NP_853501.2| tRNA modification GTPase MnmE [Mycoplasma gallisepticum str. R(low)] gi|298286914|sp|Q7NAD9|MNME_MYCGA RecName: Full=tRNA modification GTPase mnmE gi|284812296|gb|AAP57069.2| tRNA modification GTPase MnmE [Mycoplasma gallisepticum str. R(low)] gi|284931001|gb|ADC30940.1| tRNA modification GTPase MnmE [Mycoplasma gallisepticum str. R(high)] Length = 453 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 48/128 (37%), Positives = 72/128 (56%), Gaps = 20/128 (15%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIING-VIFNIVDTAGIADG 63 IAIVG PN GKS+L N L+ ++ A+V N PG TRD + GQ ++N +I N++DTAGI Sbjct: 224 IAIVGEPNAGKSSLLNALLNEQKAIVTNIPGTTRDTVEGQIVLNDELIINLIDTAGI--- 280 Query: 64 KNCSIAKQMNDQTEL--------AINEAHLILFLIDSKAGITPYDHA-ITSFLRKKNIPI 114 ++ +DQ E I+++ L+++LID YD I +L K Sbjct: 281 ------RKSSDQIEQIGINKSFKTIDKSDLVIYLIDLNK-YQNYDKTNIYKYLINKKKQF 333 Query: 115 IIVSNKMD 122 ++V NK+D Sbjct: 334 VLVGNKVD 341 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 46/137 (33%), Positives = 69/137 (50%), Gaps = 4/137 (2%) Query: 197 VKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHP-IEI 255 +K IS+ ++IA+VG PN GKS+L+N LL + + + G TRD+V + I + Sbjct: 215 LKQISEGIKIAIVGEPNAGKSSLLNALLNEQKAIVTNIPGTTRDTVEGQIVLNDELIINL 274 Query: 256 FDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGH 315 DTAG+RK S + +EQ + KS +++ + I L+D I + N Sbjct: 275 IDTAGIRKSS---DQIEQIGINKSFKTIDKSDLVIYLIDLNKYQNYDKTNIYKYLINKKK 331 Query: 316 AVVLALNKWDMVSDKLN 332 VL NK D V LN Sbjct: 332 QFVLVGNKVDEVDPTLN 348 >gi|165975963|ref|YP_001651556.1| GTP-binding protein Era [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|226741165|sp|B0BUA7|ERA_ACTPJ RecName: Full=GTPase Era gi|165876064|gb|ABY69112.1| GTP-binding protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 304 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 52/183 (28%), Positives = 87/183 (47%), Gaps = 20/183 (10%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N+++ +K+++ TR R+ G + VDT G+ + Sbjct: 15 IAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIHTEDQYQAIYVDTPGLHIEE 74 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD-- 122 +I + MN AI + LI+F+++ T D + + LR P+++ NK+D Sbjct: 75 KRAINRLMNRAASSAIGDVDLIIFVVEG-TKWTDDDEMVLNKLRAAKAPVVLAINKVDNI 133 Query: 123 ----------TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPL 172 T ++Q+ DF EI+ ISA+ L ++ K ++ + P Sbjct: 134 KEKDELLPHITELSQK-------FDFAEILPISAQRGKNVHILQKIVRKSLREGVHHFPE 186 Query: 173 EMI 175 E + Sbjct: 187 EYV 189 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 64/130 (49%), Gaps = 5/130 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMR-KP 264 IA+VGRPNVGKSTL+N++LG +T ++ TR + + DT G+ + Sbjct: 15 IAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIHTEDQYQAIYVDTPGLHIEE 74 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 R L + ++ V + I +++ T + D +++ + VVLA+NK Sbjct: 75 KRAINRLMNRAASSAIGDV---DLIIFVVEGT-KWTDDDEMVLNKLRAAKAPVVLAINKV 130 Query: 325 DMVSDKLNLL 334 D + +K LL Sbjct: 131 DNIKEKDELL 140 >gi|163742610|ref|ZP_02149996.1| tRNA modification GTPase [Phaeobacter gallaeciensis 2.10] gi|161384195|gb|EDQ08578.1| tRNA modification GTPase [Phaeobacter gallaeciensis 2.10] Length = 341 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 58/233 (24%), Positives = 95/233 (40%), Gaps = 46/233 (19%) Query: 193 GKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHP 252 G + I +A++G PNVGKSTL+N L G +T +G TRD + + + P Sbjct: 114 GVKMAERIRSGFEVAIIGAPNVGKSTLLNALAGREAAITSEYAGTTRDVIEVRMDLAGLP 173 Query: 253 IEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFN 312 + + DTAG+RK E + K K+ EK DLR+ + Sbjct: 174 VTLLDTAGLRKTDDHVEGIGIKMAKERA-------------------EKADLRVF-LTED 213 Query: 313 TGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVL 372 + +V+ K +L+ D +PQ +SG+TG+G+D L+ + Sbjct: 214 RAAIDIDISEDDIVVAPKADLVGD-------GVPQ------KAVSGKTGQGIDMLITDIT 260 Query: 373 EI--NKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSF 423 ++ N+ K I T + KT Y+RL+ + P + Sbjct: 261 KVLRNRAGKVGIATRARHRETMKTA-----------YDRLQSAQDVLRYGPEY 302 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/98 (31%), Positives = 54/98 (55%), Gaps = 13/98 (13%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI-- 60 + +AI+GAPNVGKSTL N L ++ A+ + G TRD + + + G+ ++DTAG+ Sbjct: 125 FEVAIIGAPNVGKSTLLNALAGREAAITSEYAGTTRDVIEVRMDLAGLPVTLLDTAGLRK 184 Query: 61 ----ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKA 94 +G +AK+ ++ +L + FL + +A Sbjct: 185 TDDHVEGIGIKMAKERAEKADLRV-------FLTEDRA 215 >gi|312862786|ref|ZP_07723026.1| tRNA modification GTPase TrmE [Streptococcus vestibularis F0396] gi|311101646|gb|EFQ59849.1| tRNA modification GTPase TrmE [Streptococcus vestibularis F0396] Length = 456 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 42/140 (30%), Positives = 79/140 (56%), Gaps = 6/140 (4%) Query: 187 ENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISW 246 EN+ + K K + + L A++GRPNVGKS+L+N LL + + G TRD + Sbjct: 207 ENLLATAKRG-KILREGLSTAIIGRPNVGKSSLLNNLLREEKAIVTDIEGTTRDVIEEYV 265 Query: 247 NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRI 306 N K P+++ DTAG+R + E + V++S +++ + +++L+++ P +QD + Sbjct: 266 NIKGVPLKLIDTAGIRDTDDVVEKI---GVERSKKALEEADLVLLVLNSSEPLTEQDRTL 322 Query: 307 VDSVFNTGHAVVLALNKWDM 326 ++ N+ ++ LNK D+ Sbjct: 323 LEISKNSNR--IILLNKTDL 340 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 43/117 (36%), Positives = 68/117 (58%), Gaps = 3/117 (2%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L++++ A+V + G TRD + I GV ++DTAGI D + Sbjct: 226 AIIGRPNVGKSSLLNNLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRDTDD 285 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + K ++++ A+ EA L+L +++S +T D + KN II+ NK D Sbjct: 286 V-VEKIGVERSKKALEEADLVLLVLNSSEPLTEQDRTLLEI--SKNSNRIILLNKTD 339 >gi|197294186|ref|YP_001798727.1| tRNA modification GTPase TrmE [Candidatus Phytoplasma australiense] gi|171853513|emb|CAM11355.1| tRNA modification GTPase [Candidatus Phytoplasma australiense] Length = 453 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 58/232 (25%), Positives = 112/232 (48%), Gaps = 38/232 (16%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 ++ ++GRPNVGKS+L+N LL + + +G TRD V S+N + + + DTAG+ + Sbjct: 220 IKTLIIGRPNVGKSSLLNALLNEPKAIVSDIAGTTRDFVDASFNCQGITLNLIDTAGIHQ 279 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 T +E+ + ++ + + + E +++LD + P ++ D ++++ ++ NK Sbjct: 280 T---TNPIEKIGISRTKKILSSAELILLVLDQSEPLKEDDEKLLE--LTRLKPRIIIGNK 334 Query: 324 WDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRIT 383 D+ ++K + + IKN +IS GLD+L ++ Sbjct: 335 ADLSNEK-----TVTSFPIKNFI--------SISSLKKTGLDELQKAI------------ 369 Query: 384 TSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFLIFCT-FPNKIP 434 LQK QL+ FN ++ +++I QIQ + + F T F + +P Sbjct: 370 -------LQKFQLEQISSKDFNSFSNVRHINQIQIAHQALKDFQTAFMDSMP 414 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 52/158 (32%), Positives = 76/158 (48%), Gaps = 7/158 (4%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 I+G PNVGKS+L N L+ + A+V + G TRD + G+ N++DTAGI N Sbjct: 224 IIGRPNVGKSSLLNALLNEPKAIVSDIAGTTRDFVDASFNCQGITLNLIDTAGIHQTTN- 282 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 I K +T+ ++ A LIL ++D + D + R K P II+ NK D Sbjct: 283 PIEKIGISRTKKILSSAELILLVLDQSEPLKEDDEKLLELTRLK--PRIIIGNKADL--- 337 Query: 127 QRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFK 164 N + S K + IS+ G EL I + F+ Sbjct: 338 -SNEKTVTSFPIKNFISISSLKKTGLDELQKAILQKFQ 374 >gi|313890071|ref|ZP_07823706.1| tRNA modification GTPase TrmE [Streptococcus pseudoporcinus SPIN 20026] gi|313121432|gb|EFR44536.1| tRNA modification GTPase TrmE [Streptococcus pseudoporcinus SPIN 20026] Length = 458 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 43/140 (30%), Positives = 79/140 (56%), Gaps = 6/140 (4%) Query: 187 ENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISW 246 EN+ K K + + L A++GRPNVGKS+L+N LL ++ + +G TRD + Sbjct: 209 ENLLRTAKRG-KILREGLSTAIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYV 267 Query: 247 NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRI 306 N K P+++ DTAG+R+ + E + V++S + ++ + +++L+A+ P QD + Sbjct: 268 NIKGVPLKLIDTAGIRETDDLVEKI---GVERSKKVLKEADLVLLVLNASEPLTTQDRLL 324 Query: 307 VDSVFNTGHAVVLALNKWDM 326 ++ T ++ LNK D+ Sbjct: 325 LELSQETNRLIL--LNKTDL 342 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/117 (32%), Positives = 67/117 (57%), Gaps = 3/117 (2%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+++ A+V + G TRD + I GV ++DTAGI + + Sbjct: 228 AIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPLKLIDTAGIRETDD 287 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + K ++++ + EA L+L ++++ +T D + ++ N I++ NK D Sbjct: 288 L-VEKIGVERSKKVLKEADLVLLVLNASEPLTTQDRLLLELSQETNRLILL--NKTD 341 >gi|254369164|ref|ZP_04985176.1| hypothetical protein FTAG_00104 [Francisella tularensis subsp. holarctica FSC022] gi|157122114|gb|EDO66254.1| hypothetical protein FTAG_00104 [Francisella tularensis subsp. holarctica FSC022] Length = 297 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 82/163 (50%), Gaps = 5/163 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 I+I+G PNVGKSTL N ++K K+++ P TR ++ G + F VDT GI + Sbjct: 7 ISIIGRPNVGKSTLLNNILKYKVSITSRKPQTTRHQITGIKTLGDTQFIYVDTPGIHIKE 66 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I K MN + +ILF+++ T + I L+ IPI +V NK+D + Sbjct: 67 PKAINKFMNKAATTMFKDVDVILFVVEM-GKWTELEDNIVEKLKHSEIPIFLVVNKVDKK 125 Query: 125 IAQRNFYEIYS----LDFKEIVEISAEHDLGTSELHSVIFKIF 163 + I S L + +++ +SA+ +EL S I K+ Sbjct: 126 KSLEAAMFIESIKEKLSYYDVIYVSAKQGHNINELESRIEKLL 168 Score = 39.7 bits (91), Expect = 0.98, Method: Compositional matrix adjust. Identities = 17/38 (44%), Positives = 26/38 (68%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 I+++GRPNVGKSTL+N +L Y +T + TR ++ Sbjct: 7 ISIIGRPNVGKSTLLNNILKYKVSITSRKPQTTRHQIT 44 >gi|315303200|ref|ZP_07873857.1| GTP-binding protein Era [Listeria ivanovii FSL F6-596] gi|313628427|gb|EFR96903.1| GTP-binding protein Era [Listeria ivanovii FSL F6-596] Length = 301 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 49/150 (32%), Positives = 80/150 (53%), Gaps = 13/150 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N ++ +K+A++ + TR+++ G + +DT GI K Sbjct: 10 VAIVGRPNVGKSTLLNHIIGQKIAIMSDKAQTTRNKVQGVYTTDESQIIFIDTPGIHKPK 69 Query: 65 NCSIAKQMNDQTELAIN---EAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 + K + ++A+N E LI F+ID+ G D I L+ P+ ++ NK+ Sbjct: 70 H----KLGDFMVKIALNTFQEVDLIYFVIDASTGFGRGDEFIIEKLKNVQTPVFLLINKI 125 Query: 122 DTRIAQRNFYEIYS-----LDFKEIVEISA 146 D I+ +++ LDF+EI+ ISA Sbjct: 126 DL-ISPEELFKLIEQYRELLDFEEIIPISA 154 Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 69/132 (52%), Gaps = 6/132 (4%) Query: 200 ISKPLR---IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIF 256 +S+P + +A+VGRPNVGKSTL+N ++G + ++ TR+ V + I Sbjct: 1 MSEPFKSGFVAIVGRPNVGKSTLLNHIIGQKIAIMSDKAQTTRNKVQGVYTTDESQIIFI 60 Query: 257 DTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHA 316 DT G+ KP L VK ++ + + + ++DA+ F + D I++ + N Sbjct: 61 DTPGIHKPKH---KLGDFMVKIALNTFQEVDLIYFVIDASTGFGRGDEFIIEKLKNVQTP 117 Query: 317 VVLALNKWDMVS 328 V L +NK D++S Sbjct: 118 VFLLINKIDLIS 129 >gi|307292854|ref|ZP_07572700.1| GTP-binding protein Era [Sphingobium chlorophenolicum L-1] gi|306880920|gb|EFN12136.1| GTP-binding protein Era [Sphingobium chlorophenolicum L-1] Length = 302 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 59/180 (32%), Positives = 79/180 (43%), Gaps = 13/180 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVGAPN GKSTL N LV +K+A+ TR R+ G AI +VDT GI K Sbjct: 13 IAIVGAPNAGKSTLVNALVGQKVAITSPKAQTTRTRVMGVAIEGDAQMVLVDTPGIFAPK 72 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + M A LI ++D KAG+ I S L + ++ NK+D Sbjct: 73 R-RLDRAMVQAAWGGAQGADLIALVVDGKAGLGAKMEPIVSALAARPEKKWLILNKVDIA 131 Query: 125 IAQR------NFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 I ++ YE LD E +SA G EL + F + P P E+ Sbjct: 132 IKEKLLVHTQRLYE--QLDIAETFFVSAATGDGLPELKTA----FARAMPEGPWHFPEDQ 185 Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust. Identities = 44/162 (27%), Positives = 76/162 (46%), Gaps = 8/162 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA+VG PN GKSTL+N L+G +T ++ TR V + + + DT G+ P Sbjct: 13 IAIVGAPNAGKSTLVNALVGQKVAITSPKAQTTRTRVMGVAIEGDAQMVLVDTPGIFAPK 72 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 R L++ V+ + + + +++D + IV ++ L LNK D Sbjct: 73 R---RLDRAMVQAAWGGAQGADLIALVVDGKAGLGAKMEPIVSALAARPEKKWLILNKVD 129 Query: 326 MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDL 367 ++ K LL + T+ + I + + +S TG+GL +L Sbjct: 130 -IAIKEKLL--VHTQRLYEQLDIAETFF--VSAATGDGLPEL 166 >gi|13509031|emb|CAC35266.1| GTP binding protein homologue [Campylobacter jejuni] Length = 190 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 57/194 (29%), Positives = 96/194 (49%), Gaps = 9/194 (4%) Query: 231 TGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTI 290 S +G T D V+ S K+ IE DTAG+RK +I + LE+ + ++ + + + + Sbjct: 1 VSSIAGTTIDPVNESVVHKDKVIEFVDTAGIRKRGKI-QGLERFALNRTEKILSHSQIAL 59 Query: 291 VLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD---MVSDKLNLLQDLRTKAIKNLPQ 347 ++LDA F + D RI V V++ LNKWD M DK +++LR K L Sbjct: 60 LVLDAHEGFNELDERIAGLVAKHYLGVIIVLNKWDKSEMDFDKT--VKELRLDRFKFLAY 117 Query: 348 IGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRY 407 I ++ +SG+ L D +L+I + + +I TS LN ++ +P P + + Sbjct: 118 APVISVSALSGKRVHVLLD---KILQIFENFTQKIQTSKLNILIENATRAHPLPHDYGKL 174 Query: 408 NRLKYITQIQSSPP 421 ++ Y Q +PP Sbjct: 175 VKIYYAVQYDLAPP 188 Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust. Identities = 42/173 (24%), Positives = 71/173 (41%), Gaps = 18/173 (10%) Query: 30 VGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD-GKNCSIAKQMNDQTELAINEAHLILF 88 V + G T D + + + VDTAGI GK + + ++TE ++ + + L Sbjct: 1 VSSIAGTTIDPVNESVVHKDKVIEFVDTAGIRKRGKIQGLERFALNRTEKILSHSQIALL 60 Query: 89 LIDSKAGITPYDHAITSFLRKKNIPIIIVSNK-------MDTRIAQRNFYEIYSLDFKEI 141 ++D+ G D I + K + +IIV NK D + + L + + Sbjct: 61 VLDAHEGFNELDERIAGLVAKHYLGVIIVLNKWDKSEMDFDKTVKELRLDRFKFLAYAPV 120 Query: 142 VEISAEHDLGTSELHSV------IFKIFKQKYPNHPLE-MIENNKRNEESPKE 187 + +SA L +H + IF+ F QK L +IEN R P + Sbjct: 121 ISVSA---LSGKRVHVLLDKILQIFENFTQKIQTSKLNILIENATRAHPLPHD 170 >gi|322411935|gb|EFY02843.1| tRNA modification GTPase TrmE [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 458 Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 40/129 (31%), Positives = 76/129 (58%), Gaps = 5/129 (3%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L A++GRPNVGKS+L+N LL ++ + +G TRD + N K P+++ D Sbjct: 219 KILREGLSTAIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPLKLVD 278 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ + +EQ V++S ++++ + +++L+A+ P QD ++ + Sbjct: 279 TAGIRETDDL---VEQIGVERSKKALQEADLVLLVLNASEPLTDQDRSLL--YLSQDSNR 333 Query: 318 VLALNKWDM 326 ++ LNK D+ Sbjct: 334 IILLNKTDL 342 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 41/118 (34%), Positives = 70/118 (59%), Gaps = 5/118 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+++ A+V + G TRD + I GV +VDTAGI + + Sbjct: 228 AIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPLKLVDTAGIRETDD 287 Query: 66 CSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + +Q+ ++++ A+ EA L+L ++++ +T D ++ + N II+ NK D Sbjct: 288 --LVEQIGVERSKKALQEADLVLLVLNASEPLTDQDRSLLYLSQDSN--RIILLNKTD 341 >gi|284053849|ref|ZP_06384059.1| GTP-binding protein Era [Arthrospira platensis str. Paraca] Length = 228 Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 46/168 (27%), Positives = 86/168 (51%), Gaps = 4/168 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 + ++GRPNVGKSTL+N+L+G +T + TR+ + + I DT G+ KP Sbjct: 21 VGIIGRPNVGKSTLMNKLVGQKIAITSPIAQTTRNRLRGILTTDSAQIIFVDTPGIHKPH 80 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + VK + ++ + + + ++DA++ D IVD + +T V+L LNKWD Sbjct: 81 H---QLGKVLVKNAKLAIASVDVLVFVVDASVMSGGGDRYIVDLLTHTKFPVILGLNKWD 137 Query: 326 MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 + D+ + D + + + + ++G E L +L+++ L+ Sbjct: 138 LQPDQYEAI-DQSYQQFAEAHKWQMVKFSAVTGAGVETLQNLLINSLD 184 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 43/139 (30%), Positives = 67/139 (48%), Gaps = 4/139 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + I+G PNVGKSTL N+LV +K+A+ TR+RL G + VDT GI Sbjct: 21 VGIIGRPNVGKSTLMNKLVGQKIAITSPIAQTTRNRLRGILTTDSAQIIFVDTPGIHK-P 79 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + K + +LAI +++F++D+ D I L P+I+ NK D Sbjct: 80 HHQLGKVLVKNAKLAIASVDVLVFVVDASVMSGGGDRYIVDLLTHTKFPVILGLNKWDL- 138 Query: 125 IAQRNFYEIYSLDFKEIVE 143 Q + YE +++ E Sbjct: 139 --QPDQYEAIDQSYQQFAE 155 >gi|320527305|ref|ZP_08028490.1| GTP-binding protein Era [Solobacterium moorei F0204] gi|320132329|gb|EFW24874.1| GTP-binding protein Era [Solobacterium moorei F0204] Length = 297 Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 42/120 (35%), Positives = 65/120 (54%), Gaps = 3/120 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+ GRPN GKSTLIN L+G + S+ TR + + +N I DT G+ KP Sbjct: 6 VALAGRPNAGKSTLINSLIGEKVAIVSSKPQTTRSEIRGIYTDENCQIIFTDTPGIHKPK 65 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 LE + K++ ++ + +++DA+ P+ K D +++ V NTG V L LNK D Sbjct: 66 F---RLESRMNKEAADVIQGVDLIYLVVDASTPYAKGDEFVLNMVKNTGLPVFLVLNKMD 122 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 52/186 (27%), Positives = 82/186 (44%), Gaps = 15/186 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+ G PN GKSTL N L+ +K+A+V + P TR + G DT GI K Sbjct: 6 VALAGRPNAGKSTLINSLIGEKVAIVSSKPQTTRSEIRGIYTDENCQIIFTDTPGIHKPK 65 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPY---DHAITSFLRKKNIPIIIVSNKM 121 + +MN + I LI ++D+ TPY D + + ++ +P+ +V NKM Sbjct: 66 -FRLESRMNKEAADVIQGVDLIYLVVDAS---TPYAKGDEFVLNMVKNTGLPVFLVLNKM 121 Query: 122 DTRIAQR------NFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 D ++ + E Y DF E +SA+ +L K + +P EM Sbjct: 122 DKMQPEKIVKVIQQWQERY--DFAEYFPLSAKFGRSFEDLIKTTSKYLPEGDLLYPAEMT 179 Query: 176 ENNKRN 181 + N Sbjct: 180 SDGAEN 185 >gi|331002965|ref|ZP_08326477.1| tRNA modification GTPase TrmE [Lachnospiraceae oral taxon 107 str. F0167] gi|330413009|gb|EGG92384.1| tRNA modification GTPase TrmE [Lachnospiraceae oral taxon 107 str. F0167] Length = 456 Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 37/126 (29%), Positives = 77/126 (61%), Gaps = 5/126 (3%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 I + + ++G+PN GKS+++N L +R + +G TRD+++ + + I DTA Sbjct: 216 IKEGINTVIIGKPNAGKSSILNLLSRTDRAIVTDIAGTTRDTLTENIKLSGISLNITDTA 275 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R+ + ES+ V+K++++ + +V++D +P +K+D+ +++SV N +A++L Sbjct: 276 GIRQTDDVVESI---GVQKAIEASNNADLNLVVIDGLMPLDKEDIELLESVKNK-NAIIL 331 Query: 320 ALNKWD 325 +NK D Sbjct: 332 -INKSD 336 Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 59/186 (31%), Positives = 90/186 (48%), Gaps = 6/186 (3%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 I+G PN GKS++ N L + A+V + G TRD L ++G+ NI DTAGI + Sbjct: 224 IIGKPNAGKSSILNLLSRTDRAIVTDIAGTTRDTLTENIKLSGISLNITDTAGIRQTDDV 283 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRK-KNIPIIIVSNKMDTRI 125 + + E A N A L L +ID G+ P D L KN II+ NK D + Sbjct: 284 VESIGVQKAIE-ASNNADLNLVVID---GLMPLDKEDIELLESVKNKNAIILINKSDKEL 339 Query: 126 AQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEESP 185 + +I K+++ SA+ ++G EL ++I F N ++I N R++E Sbjct: 340 -KIGVEDIKKYSSKDVIIFSAKENIGVDELENMIKSKFISNEINFNDQVIITNIRHQEII 398 Query: 186 KENITS 191 E + S Sbjct: 399 NETLES 404 >gi|312210491|emb|CBX90578.1| hypothetical protein [Leptosphaeria maculans] Length = 723 Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 40/183 (21%), Positives = 95/183 (51%), Gaps = 6/183 (3%) Query: 153 SELHSVIFKIFKQKYPNHPLEMIENNKRNEESPKENITSEGKSSVKN--ISKPLRIAVVG 210 EL ++I Q + P + + + S + ++ + ++V+ + + +A++G Sbjct: 263 GELEALIDFSEDQHFDESPAVLCASVAKQVHSLRIHMEAHVANAVRGELLRNGISVALLG 322 Query: 211 RPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITE- 269 PN GKS+L+NR++G + + ++G TRD V + + +++ D AG+R+ + E Sbjct: 323 APNAGKSSLLNRIVGRDAAIVSHEAGTTRDVVEVGLDLGGWLVKMGDMAGLRRAGLLGEE 382 Query: 270 ---SLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 ++E++ ++++ Q + +V+ DAT + + + G +V++A+NK D Sbjct: 383 SVGAIEKEGIRRAKQRAFESDVLVVVQDATTEMDPEVMETAKQCVGMGISVLVAINKCDR 442 Query: 327 VSD 329 +++ Sbjct: 443 LTE 445 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 36/57 (63%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 ++A++GAPN GKS+L NR+V + A+V + G TRD + + G + + D AG+ Sbjct: 317 SVALLGAPNAGKSSLLNRIVGRDAAIVSHEAGTTRDVVEVGLDLGGWLVKMGDMAGL 373 >gi|225027254|ref|ZP_03716446.1| hypothetical protein EUBHAL_01510 [Eubacterium hallii DSM 3353] gi|224955407|gb|EEG36616.1| hypothetical protein EUBHAL_01510 [Eubacterium hallii DSM 3353] Length = 301 Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 60/194 (30%), Positives = 91/194 (46%), Gaps = 15/194 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIV--DTAGIAD 62 + I+G PNVGKSTL N+L+ +K+A+ + TR+R+ Q + IV DT GI Sbjct: 10 VTIIGRPNVGKSTLMNQLIGQKIAITSSKAQTTRNRI--QTVYTSEEGQIVFLDTPGINK 67 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 KN + M E +NE LIL+L++ I + I L+ PI +V NK D Sbjct: 68 AKN-KLGDYMLMAAERTLNEVDLILWLVEPTTFIGGGEQYIIEKLQNVKTPIFLVINKTD 126 Query: 123 TRIAQRNFYEIYS----LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 + I + +F EI+ +SA T +L IFK P P+ E+ Sbjct: 127 VATEEEILKAIVAYKDQCNFAEIIPVSALEGNNTDDLVHSIFKYL----PEGPMYYDEDT 182 Query: 179 KRNEESPKENITSE 192 ++ P+ I +E Sbjct: 183 ITDQ--PERQIVAE 194 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 41/168 (24%), Positives = 80/168 (47%), Gaps = 8/168 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 + ++GRPNVGKSTL+N+L+G +T S++ TR+ + + + I DT G+ K Sbjct: 10 VTIIGRPNVGKSTLMNQLIGQKIAITSSKAQTTRNRIQTVYTSEEGQIVFLDTPGINKAK 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + + +++ + + L++ T + I++ + N + L +NK D Sbjct: 70 N---KLGDYMLMAAERTLNEVDLILWLVEPTTFIGGGEQYIIEKLQNVKTPIFLVINKTD 126 Query: 326 MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 + +++ L + K N + I +S G DDL+ S+ + Sbjct: 127 VATEEEILKAIVAYKDQCNFAE-----IIPVSALEGNNTDDLVHSIFK 169 >gi|72382687|ref|YP_292042.1| GTP-binding protein Era [Prochlorococcus marinus str. NATL2A] gi|72002537|gb|AAZ58339.1| Small GTP-binding protein domain:GTP-binding:GTP-binding protein Era [Prochlorococcus marinus str. NATL2A] Length = 313 Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 47/168 (27%), Positives = 90/168 (53%), Gaps = 6/168 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++GRPNVGKST IN+ +G +T + TR+ + + + I DT G+ KP Sbjct: 16 IALIGRPNVGKSTFINKFIGEKIAITSPIAQTTRNRLKVILTNEKSQIIFVDTPGIHKPH 75 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + L ++ V+ + +S+ + +V+ +A+ + D I++ + N V++ALNKWD Sbjct: 76 HL---LGERLVQSAKRSIGDVDAVLVIFEASHSPGRGDAFILNLIRNLKIPVIVALNKWD 132 Query: 326 MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 +++ L+ ++ R K + + + S TG+G ++L+ + E Sbjct: 133 LLA--LSQFKE-RKKEYFEFLEGTNWPVFCCSALTGQGCNELISEIEE 177 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 39/132 (29%), Positives = 67/132 (50%), Gaps = 10/132 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIING----VIFNIVDTAGI 60 IA++G PNVGKST N+ + +K+A+ TR+RL + I+ +IF VDT GI Sbjct: 16 IALIGRPNVGKSTFINKFIGEKIAITSPIAQTTRNRL--KVILTNEKSQIIF--VDTPGI 71 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + + +++ + +I + +L + ++ D I + +R IP+I+ NK Sbjct: 72 HKPHHL-LGERLVQSAKRSIGDVDAVLVIFEASHSPGRGDAFILNLIRNLKIPVIVALNK 130 Query: 121 MDTRIAQRNFYE 132 D +A F E Sbjct: 131 WDL-LALSQFKE 141 >gi|330685267|gb|EGG96928.1| tRNA modification GTPase TrmE [Staphylococcus epidermidis VCU121] Length = 459 Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 70/119 (58%), Gaps = 1/119 (0%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PNVGKS++ N L++ A+V G TRD L + GV +VDTAGI D ++ Sbjct: 226 IVGRPNVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRDTEDI 285 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 + K +++ A+++A LILF++++ +T D + ++ +++ +II ++T + Sbjct: 286 -VEKIGVERSRKALSQADLILFVLNNNEALTEDDQTLYDVVKNEDVIVIINKTDLETHL 343 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 48/177 (27%), Positives = 89/177 (50%), Gaps = 14/177 (7%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L +VGRPNVGKS+++N L+ N+ + +G TRD + N + P+ + D Sbjct: 216 KIMREGLSTVIVGRPNVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVD 275 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R I E + V++S +++ + + +L+ + D + D V N V Sbjct: 276 TAGIRDTEDIVEKI---GVERSRKALSQADLILFVLNNNEALTEDDQTLYDVVKN--EDV 330 Query: 318 VLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEI 374 ++ +NK D+ + L +K + IGD + S EG+D+L + + ++ Sbjct: 331 IVIINKTDLET-------HLDINEVKEM--IGDTPLIQTSMLKQEGIDELEIQIRDL 378 >gi|300724127|ref|YP_003713444.1| GTPase [Xenorhabdus nematophila ATCC 19061] gi|297630661|emb|CBJ91326.1| GTPase believed to be involved in coordination of cell cycle, energy metabolism, cell division [Xenorhabdus nematophila ATCC 19061] Length = 301 Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 49/178 (27%), Positives = 88/178 (49%), Gaps = 6/178 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N+L+ +K+++ P TR R+ G VDT G+ + Sbjct: 11 VAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGIHTKGAYQTIYVDTPGLHIEE 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD-- 122 +I + MN +I + L++F+++ TP D + + LR P+++ NK+D Sbjct: 71 KRAINRLMNRAASSSIGDVELVIFVVEG-THWTPDDEMVVNKLRNLRCPVLLAINKVDNV 129 Query: 123 ---TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 T + + ++F ++V ISAE + + ++ + Q + P + I + Sbjct: 130 TDKTILLPHIGFLSQQMNFIDVVPISAEKGMNVDTIAKLVREHMPQADHHFPEDYITD 187 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 43/130 (33%), Positives = 65/130 (50%), Gaps = 5/130 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMR-KP 264 +A+VGRPNVGKSTL+N+LLG +T + TR + + DT G+ + Sbjct: 11 VAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGIHTKGAYQTIYVDTPGLHIEE 70 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 R L + S+ V E I +++ T + D +V+ + N V+LA+NK Sbjct: 71 KRAINRLMNRAASSSIGDV---ELVIFVVEGT-HWTPDDEMVVNKLRNLRCPVLLAINKV 126 Query: 325 DMVSDKLNLL 334 D V+DK LL Sbjct: 127 DNVTDKTILL 136 >gi|239637283|ref|ZP_04678270.1| tRNA modification GTPase TrmE [Staphylococcus warneri L37603] gi|239597120|gb|EEQ79630.1| tRNA modification GTPase TrmE [Staphylococcus warneri L37603] Length = 459 Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 70/119 (58%), Gaps = 1/119 (0%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PNVGKS++ N L++ A+V G TRD L + GV +VDTAGI D ++ Sbjct: 226 IVGRPNVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRDTEDI 285 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 + K +++ A+++A LILF++++ +T D + ++ +++ +II ++T + Sbjct: 286 -VEKIGVERSRKALSQADLILFVLNNNEALTEDDQTLYDVVKNEDVIVIINKTDLETHL 343 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 54/199 (27%), Positives = 96/199 (48%), Gaps = 24/199 (12%) Query: 176 ENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQS 235 E N+ E + I EG S+V +VGRPNVGKS+++N L+ N+ + + Sbjct: 204 EINQLLETGAQGKIMREGLSTV----------IVGRPNVGKSSMLNNLIQDNKAIVTEVA 253 Query: 236 GITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDA 295 G TRD + N + P+ + DTAG+R I E + V++S +++ + + +L+ Sbjct: 254 GTTRDVLEEYVNVRGVPLRLVDTAGIRDTEDIVEKI---GVERSRKALSQADLILFVLNN 310 Query: 296 TIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINT 355 + D + D V N V++ +NK D+ + L +K + IGD + Sbjct: 311 NEALTEDDQTLYDVVKN--EDVIVIINKTDLET-------HLDINEVKAM--IGDTPLIQ 359 Query: 356 ISGRTGEGLDDLMVSVLEI 374 S EG+D+L + + ++ Sbjct: 360 TSMLKQEGIDELEIQIRDL 378 >gi|39998554|ref|NP_954505.1| tRNA modification GTPase TrmE [Geobacter sulfurreducens PCA] gi|81700815|sp|Q746Q3|MNME_GEOSL RecName: Full=tRNA modification GTPase mnmE gi|39985501|gb|AAR36855.1| tRNA modification GTPase TrmE [Geobacter sulfurreducens PCA] gi|298507496|gb|ADI86219.1| tRNA (5-carboxymethylaminomethyl-2-thio-U34) modification GTPase [Geobacter sulfurreducens KN400] Length = 456 Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 47/173 (27%), Positives = 91/173 (52%), Gaps = 27/173 (15%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 + + G+PNVGKS+L+N LL R + S G TRD + N + P+ + DTAG+R Sbjct: 223 VLIAGKPNVGKSSLLNTLLQEKRAIVTSVPGTTRDIIEEVVNIRGLPLRMIDTAGIRDTE 282 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 I +E++ V+ +++ + + ++++D + P ++ D I+ ++ G ++L NK D Sbjct: 283 DI---VEKEGVRLTLEKIPEADLVLLVIDGSRPLDEDDRMILSAL--AGKRLILVENKCD 337 Query: 326 M-----VSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 + + D+L L +P++ T+S G+G+D+L S+ + Sbjct: 338 LPRAVQIPDELVL-----------MPRV------TVSTSRGDGIDELKESIFQ 373 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 56/160 (35%), Positives = 80/160 (50%), Gaps = 6/160 (3%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 + I G PNVGKS+L N L+++K A+V + PG TRD + I G+ ++DTAGI D Sbjct: 222 AVLIAGKPNVGKSSLLNTLLQEKRAIVTSVPGTTRDIIEEVVNIRGLPLRMIDTAGIRDT 281 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 ++ + K+ T I EA L+L +ID + D I S L K +I+V NK D Sbjct: 282 EDI-VEKEGVRLTLEKIPEADLVLLVIDGSRPLDEDDRMILSALAGKR--LILVENKCDL 338 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 A + E+ V +S G EL IF+ F Sbjct: 339 PRAVQIPDELV---LMPRVTVSTSRGDGIDELKESIFQTF 375 >gi|104774144|ref|YP_619124.1| GTP-binding protein Era [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116514234|ref|YP_813140.1| GTP-binding protein Era [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|122275034|sp|Q04A20|ERA_LACDB RecName: Full=GTPase Era gi|122983938|sp|Q1G9W6|ERA_LACDA RecName: Full=GTPase Era gi|103423225|emb|CAI98053.1| GTP-binding protein [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116093549|gb|ABJ58702.1| GTPase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|325125924|gb|ADY85254.1| GTP-binding protein [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 301 Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 53/172 (30%), Positives = 85/172 (49%), Gaps = 12/172 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTL NRL+ +K+A+ P TR+++ G + + VDT GI K Sbjct: 12 VALVGRPNVGKSTLMNRLIGQKVAITSAKPQTTRNKISGIYTEDDMQVVFVDTPGIF--K 69 Query: 65 NCSIAKQMNDQTEL-AINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + S + D+ L ++ + L++F++D+K ++ + L+ +IP+ +V NK+D Sbjct: 70 SHSDLDEYMDKASLSSLKDVDLVMFMVDAKEAGKGEEY-VAGLLKDLDIPVFLVINKIDQ 128 Query: 124 RIAQRNFYEIYSLD----FKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHP 171 I S F E + ISA G +L K K P P Sbjct: 129 VHPNELLPIIDSYQAVGKFAEFLPISARQGNGVDDL----LKTLKDYLPEGP 176 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/167 (28%), Positives = 85/167 (50%), Gaps = 17/167 (10%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VGRPNVGKSTL+NRL+G +T ++ TR+ +S + + + DT G+ K Sbjct: 12 VALVGRPNVGKSTLMNRLIGQKVAITSAKPQTTRNKISGIYTEDDMQVVFVDTPGIFKSH 71 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L++ K S+ S++ + + ++DA + ++ + + + V L +NK D Sbjct: 72 ---SDLDEYMDKASLSSLKDVDLVMFMVDAKEAGKGEEY-VAGLLKDLDIPVFLVINKID 127 Query: 326 MV--SDKLNLLQDLRT--KAIKNLPQIGDIYINTISGRTGEGLDDLM 368 V ++ L ++ + K + LP IS R G G+DDL+ Sbjct: 128 QVHPNELLPIIDSYQAVGKFAEFLP---------ISARQGNGVDDLL 165 >gi|238854658|ref|ZP_04644988.1| GTP-binding protein Era [Lactobacillus jensenii 269-3] gi|260664399|ref|ZP_05865251.1| GTP-binding protein Era [Lactobacillus jensenii SJ-7A-US] gi|282932951|ref|ZP_06338348.1| GTP-binding protein Era [Lactobacillus jensenii 208-1] gi|313472197|ref|ZP_07812689.1| GTP-binding protein Era [Lactobacillus jensenii 1153] gi|238832448|gb|EEQ24755.1| GTP-binding protein Era [Lactobacillus jensenii 269-3] gi|239529577|gb|EEQ68578.1| GTP-binding protein Era [Lactobacillus jensenii 1153] gi|260561464|gb|EEX27436.1| GTP-binding protein Era [Lactobacillus jensenii SJ-7A-US] gi|281302986|gb|EFA95191.1| GTP-binding protein Era [Lactobacillus jensenii 208-1] Length = 302 Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 49/161 (30%), Positives = 81/161 (50%), Gaps = 6/161 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A++G PNVGKSTL N L+ +K+ + N P TR+++ G + + VDT GI K Sbjct: 12 VALIGRPNVGKSTLMNHLIGQKVVITSNKPQTTRNKISGIFTTDNLQAVFVDTPGIHKPK 71 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N + M+ + ++N+ L+ F+++ + + D I L K P+ ++ NK+D Sbjct: 72 N-KLDDYMDKASLSSLNDVDLVFFMVEPEK-VGKGDEYIADLLSKVKAPVFLIINKIDQV 129 Query: 125 IAQRNFYEIYSLD----FKEIVEISAEHDLGTSELHSVIFK 161 I S F EIV ISA + +L S ++K Sbjct: 130 HPDALLPVIESYQKLGKFAEIVPISATNGNNMEDLISTLYK 170 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 76/164 (46%), Gaps = 11/164 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKSTL+N L+G ++T ++ TR+ +S + N DT G+ KP Sbjct: 12 VALIGRPNVGKSTLMNHLIGQKVVITSNKPQTTRNKISGIFTTDNLQAVFVDTPGIHKPK 71 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L+ K S+ S+ + +++ K D I D + V L +NK D Sbjct: 72 N---KLDDYMDKASLSSLNDVDLVFFMVEPE-KVGKGDEYIADLLSKVKAPVFLIINKID 127 Query: 326 MVSDKLNLLQDLRTKAIKNLPQIGDIY-INTISGRTGEGLDDLM 368 V D I++ ++G I IS G ++DL+ Sbjct: 128 QVH------PDALLPVIESYQKLGKFAEIVPISATNGNNMEDLI 165 >gi|156932891|ref|YP_001436807.1| GTP-binding protein Era [Cronobacter sakazakii ATCC BAA-894] gi|189037649|sp|A7MH00|ERA_ENTS8 RecName: Full=GTPase Era gi|156531145|gb|ABU75971.1| hypothetical protein ESA_00693 [Cronobacter sakazakii ATCC BAA-894] Length = 301 Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 50/178 (28%), Positives = 88/178 (49%), Gaps = 6/178 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N+L+ +K+++ TR R+ G VDT G+ + Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGEYQAIYVDTPGLHMEE 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN +I + L++F+++ TP D + + LR+ P+I+ NK+D Sbjct: 71 KRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAINKVDNV 129 Query: 125 IAQRNF-----YEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 + + ++F +IV ISAE + + +++ K + + P + I + Sbjct: 130 QDKAELLPHLQFLGSQMNFLDIVPISAETGMNVDTIAAIVRKHLPEAIHHFPEDYITD 187 Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 52/167 (31%), Positives = 82/167 (49%), Gaps = 9/167 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS-VSISWNWKNHPIEIFDTAGMRKP 264 IA+VGRPNVGKSTL+N+LLG +T ++ TR V I + I + DT G+ Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGEYQAIYV-DTPGLHME 69 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 + ++ + K + S+ E I +++ T + D +++ + V+LA+NK Sbjct: 70 EK--RAINRLMNKAASSSIGDVELVIFVVEGT-RWTPDDEMVLNKLREGKAPVILAINKV 126 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSV 371 D V DK LL L+ Q+ + I IS TG +D + V Sbjct: 127 DNVQDKAELLPHLQFLG----SQMNFLDIVPISAETGMNVDTIAAIV 169 >gi|138896062|ref|YP_001126515.1| GTP-binding protein [Geobacillus thermodenitrificans NG80-2] gi|134267575|gb|ABO67770.1| GTP-binding protein [Geobacillus thermodenitrificans NG80-2] Length = 302 Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 54/174 (31%), Positives = 92/174 (52%), Gaps = 15/174 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKST NR++ +K+A++ + P TR+++ G + +DT G+ K Sbjct: 11 VAIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKIQGVYTDDEAQIIFIDTPGVHKPK 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 + + M A+ E LILF+++++ G + I L + N P+ +V NK+D Sbjct: 71 H-KLGDFMMKVALNALREVDLILFMVNAEEGFGRGEAFIIERLNEVNTPVFLVINKIDRV 129 Query: 124 ------RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHP 171 I R + ++Y+ F EIV ISA L + + ++ +I KQ+ P P Sbjct: 130 HPDELLPIIDR-YKDLYT--FAEIVPISA---LEGNNVERLLEQI-KQRLPEGP 176 Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKST +NR++G + + TR+ + + I DT G+ KP Sbjct: 11 VAIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKIQGVYTDDEAQIIFIDTPGVHKPK 70 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L +K ++ ++R + + +++A F + + I++ + V L +NK D Sbjct: 71 ---HKLGDFMMKVALNALREVDLILFMVNAEEGFGRGEAFIIERLNEVNTPVFLVINKID 127 Query: 326 MV 327 V Sbjct: 128 RV 129 >gi|283783324|ref|YP_003374078.1| GTP-binding protein Era [Gardnerella vaginalis 409-05] gi|298252737|ref|ZP_06976531.1| GTPase [Gardnerella vaginalis 5-1] gi|283442229|gb|ADB14695.1| GTP-binding protein Era [Gardnerella vaginalis 409-05] gi|297533101|gb|EFH71985.1| GTPase [Gardnerella vaginalis 5-1] Length = 353 Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 60/204 (29%), Positives = 99/204 (48%), Gaps = 23/204 (11%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTL N L+ ++A+ + P TR + G + +VDT GI + Sbjct: 48 VAVVGRPNVGKSTLMNALIGTQIAIASSRPETTRKAIRGIVTTDNAQMVLVDTPGIHRPR 107 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLR----KKN--------I 112 + +++ND + ++ + I FL+ + I P D I S LR KK+ + Sbjct: 108 TL-LGQRLNDIVDESLADVDAIAFLLPADQEIGPGDRRILSRLRSDFAKKDEKGNWTWKV 166 Query: 113 PIIIVSNKMDTRIAQRNFYEIYSL----DFKEIVEISAEHDLGTSELHSVIFKIFKQKYP 168 P+I + K+DT + + DF +IV +SA E+ +V+ Q P Sbjct: 167 PLIGIVTKIDTLSRSELVTHLLQIQQFADFTDIVPVSALERDNVDEVKNVLI----QNLP 222 Query: 169 NHPLEMIENNKRNEESPKENITSE 192 P +M ++ +EES E++ SE Sbjct: 223 EGP-QMYPADQLSEES-TESMISE 244 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 41/78 (52%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +AVVGRPNVGKSTL+N L+G + S+ TR ++ N + + DT G+ +P Sbjct: 48 VAVVGRPNVGKSTLMNALIGTQIAIASSRPETTRKAIRGIVTTDNAQMVLVDTPGIHRPR 107 Query: 266 RITESLEQKTVKKSMQSV 283 + V +S+ V Sbjct: 108 TLLGQRLNDIVDESLADV 125 >gi|183599776|ref|ZP_02961269.1| hypothetical protein PROSTU_03284 [Providencia stuartii ATCC 25827] gi|188022040|gb|EDU60080.1| hypothetical protein PROSTU_03284 [Providencia stuartii ATCC 25827] Length = 302 Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 52/170 (30%), Positives = 84/170 (49%), Gaps = 10/170 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N+L+ +K+++ P TR R+ G + VDT G+ + Sbjct: 11 VAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGIHTEDEYQIIYVDTPGLHIEE 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD-- 122 +I + MN +I + L++F+++ T D + + L+ P+I+ NK+D Sbjct: 71 KRAINRLMNRAASSSIGDVELVIFVVEG-TNWTDDDEMVLNKLKGLRCPVILAINKIDNV 129 Query: 123 ---TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPN 169 T + + ++F ++V ISAE G I KI KQ P Sbjct: 130 TDKTVLLPHIGFVSQKMNFLDVVPISAEKGKGV----DTIAKIVKQHIPE 175 Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 50/168 (29%), Positives = 77/168 (45%), Gaps = 23/168 (13%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMR-KP 264 +A+VGRPNVGKSTL+N+LLG +T + TR + + I DT G+ + Sbjct: 11 VAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGIHTEDEYQIIYVDTPGLHIEE 70 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 R L + S+ V E I +++ T + D +++ + V+LA+NK Sbjct: 71 KRAINRLMNRAASSSIGDV---ELVIFVVEGT-NWTDDDEMVLNKLKGLRCPVILAINKI 126 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIY-------INTISGRTGEGLD 365 D V+DK L LP IG + + IS G+G+D Sbjct: 127 DNVTDKTVL-----------LPHIGFVSQKMNFLDVVPISAEKGKGVD 163 >gi|149370691|ref|ZP_01890380.1| tRNA modification GTPase TrmE [unidentified eubacterium SCB49] gi|149356242|gb|EDM44799.1| tRNA modification GTPase TrmE [unidentified eubacterium SCB49] Length = 465 Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 54/174 (31%), Positives = 85/174 (48%), Gaps = 18/174 (10%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VG PNVGKSTL+N LL R + +G TRD++ N DTAG+R S Sbjct: 223 VAIVGEPNVGKSTLLNALLNEERAIVSDIAGTTRDTIEDELNIGGIAFRFIDTAGIRDTS 282 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDAT-IPFEKQDLRIVDSVFNTGH---AVVLAL 321 E L +KK+ + + + + L+ AT + +K +I H +V+ + Sbjct: 283 DTIEGL---GIKKTFEKMEQAQVVLFLIAATQLLQDKTATQIEIEKIKNKHPQKTLVMVV 339 Query: 322 NKWDMVSDKLNLLQDLRTKAIKN--LPQIGDIYINTISGRTGEGLDDLMVSVLE 373 NK D + K + +KN LPQ + IS +TGEG++ L ++L+ Sbjct: 340 NKIDQIQTK-------QISEVKNIHLPQ--KTVLIPISAKTGEGVETLKTTLLD 384 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 36/86 (41%), Positives = 53/86 (61%), Gaps = 1/86 (1%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N L+ ++ A+V + G TRD + + I G+ F +DTAGI D Sbjct: 223 VAIVGEPNVGKSTLLNALLNEERAIVSDIAGTTRDTIEDELNIGGIAFRFIDTAGIRDTS 282 Query: 65 NCSIAKQMNDQTELAINEAHLILFLI 90 + +I +T + +A ++LFLI Sbjct: 283 D-TIEGLGIKKTFEKMEQAQVVLFLI 307 >gi|217970712|ref|YP_002355946.1| GTP-binding protein Era [Thauera sp. MZ1T] gi|217508039|gb|ACK55050.1| GTP-binding protein Era [Thauera sp. MZ1T] Length = 309 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 51/156 (32%), Positives = 79/156 (50%), Gaps = 7/156 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL NRL+ +K+++V + TR R+ G G F VDT G Sbjct: 24 VAIVGRPNVGKSTLLNRLIGQKISIVSSKAQTTRHRVTGILTEPGAQFVFVDTPGFQTHH 83 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD-- 122 ++ + MN + + L+ F+I++ T D + + + + + +I+V NK+D Sbjct: 84 RNALNRSMNRTVSQVLADVDLVFFVIEA-GRFTEDDRKVLAVIPESS-KVILVINKVDQL 141 Query: 123 ---TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 TR+ + DF EIV +SAE EL Sbjct: 142 KDKTRLLPFIAQVREARDFTEIVPLSAEKGRNVDEL 177 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 39/129 (30%), Positives = 64/129 (49%), Gaps = 4/129 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VGRPNVGKSTL+NRL+G + S++ TR V+ DT G + Sbjct: 24 VAIVGRPNVGKSTLLNRLIGQKISIVSSKAQTTRHRVTGILTEPGAQFVFVDTPGFQTHH 83 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 R +L + + Q + + +++A F + D +++ +V V+L +NK D Sbjct: 84 R--NALNRSMNRTVSQVLADVDLVFFVIEAG-RFTEDDRKVL-AVIPESSKVILVINKVD 139 Query: 326 MVSDKLNLL 334 + DK LL Sbjct: 140 QLKDKTRLL 148 >gi|254490819|ref|ZP_05104002.1| GTP-binding protein Era [Methylophaga thiooxidans DMS010] gi|224463991|gb|EEF80257.1| GTP-binding protein Era [Methylophaga thiooxydans DMS010] Length = 301 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 76/164 (46%), Gaps = 5/164 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKSTL NR++ +K+ + P TR R+ G + F VDT G+ Sbjct: 11 VAIIGRPNVGKSTLINRILGQKLCITSRRPQTTRHRILGIKTNDSGQFIYVDTPGMHSDN 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 ++ + MN +I + +ILF+++ + + P+I+V NK D Sbjct: 71 KKAMNRYMNRAAASSIEDVDVILFVVEGLKWTDEDKRVLKRLQQDARCPVILVLNKADKL 130 Query: 125 IAQRNFY-EIYSL----DFKEIVEISAEHDLGTSELHSVIFKIF 163 + +I L DF +V +SA + T L I K+ Sbjct: 131 DDKAALLPQIQELAAQFDFAAVVPVSARKGMNTDLLEQEIAKLM 174 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 41/137 (29%), Positives = 71/137 (51%), Gaps = 9/137 (6%) Query: 203 PLR---IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV-SISWNWKNHPIEIFDT 258 P R +A++GRPNVGKSTLINR+LG +T + TR + I N I + DT Sbjct: 5 PFRSGYVAIIGRPNVGKSTLINRILGQKLCITSRRPQTTRHRILGIKTNDSGQFIYV-DT 63 Query: 259 AGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHA-V 317 GM ++ +++ + + + S+ + + +++ + + +D R++ + V Sbjct: 64 PGMHSDNK--KAMNRYMNRAAASSIEDVDVILFVVEG-LKWTDEDKRVLKRLQQDARCPV 120 Query: 318 VLALNKWDMVSDKLNLL 334 +L LNK D + DK LL Sbjct: 121 ILVLNKADKLDDKAALL 137 >gi|282897000|ref|ZP_06305002.1| Small GTP-binding protein, era -like protein [Raphidiopsis brookii D9] gi|281197652|gb|EFA72546.1| Small GTP-binding protein, era -like protein [Raphidiopsis brookii D9] Length = 308 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 51/179 (28%), Positives = 87/179 (48%), Gaps = 6/179 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 I I+G PNVGKSTL N+L+ +K+A+ TR+RL G VDT GI Sbjct: 19 IGIIGRPNVGKSTLMNQLIGQKIAITSPVAQTTRNRLRGILTREKAQLIFVDTPGIHK-P 77 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD-- 122 + + + + ++AI ++LF++D A D I L K IP+I+ NK+D Sbjct: 78 HHPLGEVLVQNAKIAITSVDVVLFVVDGTAVCGGGDRFIADLLSKCEIPVIMGINKIDQQ 137 Query: 123 ---TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 T ++ E+ + +IV+ SA + G EL ++ + + +P +++ + Sbjct: 138 PVETEKIDESYRELARENQWQIVKFSALENQGILELEDLLIEQLETGPLYYPPDLVTDQ 196 Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 45/176 (25%), Positives = 86/176 (48%), Gaps = 10/176 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 I ++GRPNVGKSTL+N+L+G +T + TR+ + + + DT G+ KP Sbjct: 19 IGIIGRPNVGKSTLMNQLIGQKIAITSPVAQTTRNRLRGILTREKAQLIFVDTPGIHKPH 78 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + V+ + ++ + + + ++D T D I D + V++ +NK D Sbjct: 79 H---PLGEVLVQNAKIAITSVDVVLFVVDGTAVCGGGDRFIADLLSKCEIPVIMGINKID 135 Query: 326 ---MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLW 378 + ++K++ + R A +N QI + + + + L+DL++ LE L+ Sbjct: 136 QQPVETEKID--ESYRELARENQWQI--VKFSALENQGILELEDLLIEQLETGPLY 187 >gi|241763851|ref|ZP_04761896.1| GTP-binding protein Era [Acidovorax delafieldii 2AN] gi|241366895|gb|EER61309.1| GTP-binding protein Era [Acidovorax delafieldii 2AN] Length = 334 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 44/118 (37%), Positives = 62/118 (52%), Gaps = 2/118 (1%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N LV +K+++ TR R+ G F VDT G Sbjct: 44 IAIVGKPNVGKSTLLNALVGQKISITSRKAQTTRHRITGIRTREQTQFIFVDTPGFQTRH 103 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 ++ K +N AI + LILF++++ T D + S K IP ++V+NK+D Sbjct: 104 ATALNKSLNKTVMGAIGDVDLILFVVEA-GSFTLADAKVLSLF-KPGIPTLLVANKLD 159 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 63/122 (51%), Gaps = 4/122 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA+VG+PNVGKSTL+N L+G +T ++ TR ++ + DT G + + Sbjct: 44 IAIVGKPNVGKSTLLNALVGQKISITSRKAQTTRHRITGIRTREQTQFIFVDTPGFQ--T 101 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 R +L + K M ++ + + +++A F D +++ S+F G +L NK D Sbjct: 102 RHATALNKSLNKTVMGAIGDVDLILFVVEAG-SFTLADAKVL-SLFKPGIPTLLVANKLD 159 Query: 326 MV 327 MV Sbjct: 160 MV 161 >gi|268593249|ref|ZP_06127470.1| GTP-binding protein Era [Providencia rettgeri DSM 1131] gi|291311144|gb|EFE51597.1| GTP-binding protein Era [Providencia rettgeri DSM 1131] Length = 302 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 53/177 (29%), Positives = 85/177 (48%), Gaps = 24/177 (13%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N+L+ +K+++ P TR R+ G + VDT G+ + Sbjct: 11 VAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGIHTEDNYQIIYVDTPGLHIEE 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD-- 122 +I + MN +I + L++F+++ T D + + L P+I+ NK+D Sbjct: 71 KRAINRLMNRAASSSIGDVELVIFVVEG-TNWTADDEMVLTKLSSLRCPVILAINKIDNV 129 Query: 123 ----------TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPN 169 + I+Q+ ++F ++V ISAE G I KI KQ P Sbjct: 130 TDKTILLPHISMISQK-------MNFLDVVPISAEKGTGV----DTIAKIVKQHIPE 175 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 43/130 (33%), Positives = 66/130 (50%), Gaps = 5/130 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMR-KP 264 +A+VGRPNVGKSTL+N+LLG +T + TR + N+ I DT G+ + Sbjct: 11 VAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGIHTEDNYQIIYVDTPGLHIEE 70 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 R L + S+ V E I +++ T + D ++ + + V+LA+NK Sbjct: 71 KRAINRLMNRAASSSIGDV---ELVIFVVEGT-NWTADDEMVLTKLSSLRCPVILAINKI 126 Query: 325 DMVSDKLNLL 334 D V+DK LL Sbjct: 127 DNVTDKTILL 136 >gi|313112541|ref|ZP_07798206.1| tRNA modification GTPase TrmE [Faecalibacterium cf. prausnitzii KLE1255] gi|310625141|gb|EFQ08431.1| tRNA modification GTPase TrmE [Faecalibacterium cf. prausnitzii KLE1255] Length = 475 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 66/120 (55%), Gaps = 5/120 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 A+VGRPN GKSTL+N L G++R + +G TRD V + + + +FDTAG+R+ Sbjct: 243 CAIVGRPNAGKSTLLNLLAGFDRAIVTPVAGTTRDVVEQAVQLGDIQLNLFDTAGLRE-- 300 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +++E + +++S + + + + D + P ++DL + TG + +NK D Sbjct: 301 -TEDAIEAEGIRRSWKKLEEAGLILAVFDGSEPPTREDLELAQRC--TGRPAIALINKED 357 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 56/118 (47%), Gaps = 3/118 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 AIVG PN GKSTL N L A+V G TRD + + + N+ DTAG+ + + Sbjct: 243 CAIVGRPNAGKSTLLNLLAGFDRAIVTPVAGTTRDVVEQAVQLGDIQLNLFDTAGLRETE 302 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + +I + ++ + EA LIL + D T D + R P I + NK D Sbjct: 303 D-AIEAEGIRRSWKKLEEAGLILAVFDGSEPPTREDLELAQ--RCTGRPAIALINKED 357 >gi|300812180|ref|ZP_07092622.1| GTP-binding protein Era [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|313123894|ref|YP_004034153.1| GTP-binding protein era-like protein [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|300496816|gb|EFK31896.1| GTP-binding protein Era [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|312280457|gb|ADQ61176.1| GTP-binding protein era-like protein [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|325686031|gb|EGD28089.1| GTP-binding protein Era [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 301 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 52/173 (30%), Positives = 87/173 (50%), Gaps = 14/173 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTL NRL+ +K+A+ P TR+++ G + + VDT GI K Sbjct: 12 VALVGRPNVGKSTLMNRLIGQKVAITSAKPQTTRNKISGIYTEDDMQVVFVDTPGIF--K 69 Query: 65 NCSIAKQMNDQTEL-AINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + S + D+ L ++ + L++F++D+K ++ + L+ +IP+ +V NK+D Sbjct: 70 SHSDLDEYMDKASLSSLKDVDLVMFMVDAKEAGKGEEY-VAGLLKDLDIPVFLVINKID- 127 Query: 124 RIAQRNFYEIYSL-----DFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHP 171 ++ + I F E + ISA G +L K K P P Sbjct: 128 QVHPNDLLPIIDSYQAVGKFAEFLPISARQGNGVDDL----LKTLKDYLPEGP 176 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 49/167 (29%), Positives = 85/167 (50%), Gaps = 17/167 (10%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VGRPNVGKSTL+NRL+G +T ++ TR+ +S + + + DT G+ K Sbjct: 12 VALVGRPNVGKSTLMNRLIGQKVAITSAKPQTTRNKISGIYTEDDMQVVFVDTPGIFKSH 71 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L++ K S+ S++ + + ++DA + ++ + + + V L +NK D Sbjct: 72 ---SDLDEYMDKASLSSLKDVDLVMFMVDAKEAGKGEEY-VAGLLKDLDIPVFLVINKID 127 Query: 326 MV--SDKLNLLQDLRT--KAIKNLPQIGDIYINTISGRTGEGLDDLM 368 V +D L ++ + K + LP IS R G G+DDL+ Sbjct: 128 QVHPNDLLPIIDSYQAVGKFAEFLP---------ISARQGNGVDDLL 165 >gi|300362683|ref|ZP_07058859.1| tRNA modification GTPase TrmE [Lactobacillus gasseri JV-V03] gi|300353674|gb|EFJ69546.1| tRNA modification GTPase TrmE [Lactobacillus gasseri JV-V03] Length = 461 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 56/195 (28%), Positives = 96/195 (49%), Gaps = 9/195 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AIVG PNVGKS+L N L + A+V + G TRD L + GV ++DTAGI ++ Sbjct: 228 AIVGRPNVGKSSLLNYLTQDDKAIVTDIAGTTRDTLEEYVSVKGVPLKLIDTAGIHHTED 287 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 + K ++++ AI EA L+L ++D+ +T D + K II+ + T+I Sbjct: 288 -KVEKIGVERSKKAIKEADLVLLILDASQDLTAEDKRLLDLTANKKRIIILNKQDLGTKI 346 Query: 126 AQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEESP 185 +Q I +L I+ S L + I K+F N +++ N+R Sbjct: 347 SQEM---IKNLTDNPIIVTSILKQKNMDALENAIEKLFFSGIENSQNQILVTNQR----- 398 Query: 186 KENITSEGKSSVKNI 200 + + ++ K S++++ Sbjct: 399 QAGLLAKAKQSLEDV 413 Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 48/168 (28%), Positives = 89/168 (52%), Gaps = 17/168 (10%) Query: 167 YPNHPLEMI---ENNKRNEESPKE-----NITSEGKSSVKNISKPLRIAVVGRPNVGKST 218 YP + ++ + E K+ +E K+ EGK I L A+VGRPNVGKS+ Sbjct: 184 YPEYDMDDLTSQEMKKKAQEVLKQIEQLLQTAQEGKI----IRNGLATAIVGRPNVGKSS 239 Query: 219 LINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKK 278 L+N L ++ + +G TRD++ + K P+++ DTAG+ + +E+ V++ Sbjct: 240 LLNYLTQDDKAIVTDIAGTTRDTLEEYVSVKGVPLKLIDTAGIHHTE---DKVEKIGVER 296 Query: 279 SMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 S ++++ + +++LDA+ +D R++D N ++ LNK D+ Sbjct: 297 SKKAIKEADLVLLILDASQDLTAEDKRLLDLTANKKRIII--LNKQDL 342 >gi|303252176|ref|ZP_07338344.1| GTP-binding protein Era [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307247516|ref|ZP_07529561.1| GTP-binding protein era [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|302648959|gb|EFL79147.1| GTP-binding protein Era [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306856019|gb|EFM88177.1| GTP-binding protein era [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 304 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 52/183 (28%), Positives = 87/183 (47%), Gaps = 20/183 (10%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N+++ +K+++ TR R+ G + VDT G+ + Sbjct: 15 IAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIHTEDQYQAIYVDTPGLHIEE 74 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD-- 122 +I + MN AI + LI+F+++ T D + + LR P+++ NK+D Sbjct: 75 KRAINRLMNRAASSAIGDVDLIIFVVEG-TKWTDDDEMVLNKLRSAKAPVVLAINKVDNI 133 Query: 123 ----------TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPL 172 T ++Q+ DF EI+ ISA+ L ++ K ++ + P Sbjct: 134 KEKDELLPHITELSQK-------FDFAEILPISAKRGKNVHILQKIVRKSLREGVHHFPE 186 Query: 173 EMI 175 E + Sbjct: 187 EYV 189 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 65/130 (50%), Gaps = 5/130 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMR-KP 264 IA+VGRPNVGKSTL+N++LG +T ++ TR + + DT G+ + Sbjct: 15 IAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIHTEDQYQAIYVDTPGLHIEE 74 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 R L + ++ V + I +++ T + D +++ + + VVLA+NK Sbjct: 75 KRAINRLMNRAASSAIGDV---DLIIFVVEGT-KWTDDDEMVLNKLRSAKAPVVLAINKV 130 Query: 325 DMVSDKLNLL 334 D + +K LL Sbjct: 131 DNIKEKDELL 140 >gi|301299788|ref|ZP_07206030.1| tRNA modification GTPase TrmE [Lactobacillus salivarius ACS-116-V-Col5a] gi|300852601|gb|EFK80243.1| tRNA modification GTPase TrmE [Lactobacillus salivarius ACS-116-V-Col5a] Length = 464 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 41/136 (30%), Positives = 80/136 (58%), Gaps = 6/136 (4%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L A+VGRPNVGKS+L+N LL ++ + +G TRD + N + P+++ D Sbjct: 221 KVLREGLATAIVGRPNVGKSSLLNHLLHEDKAIVTDIAGTTRDVIEEYVNVRGVPLKLID 280 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ + +E+ V++S +++ + +++L+A+ +D ++ + +G Sbjct: 281 TAGIRETE---DKVERIGVERSRKAIEQADLVMLVLNASEELTDEDKELIQA--TSGKKR 335 Query: 318 VLALNKWDMVSDKLNL 333 ++ LNK D+ KLN+ Sbjct: 336 IVILNKTDL-PQKLNM 350 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 45/176 (25%), Positives = 85/176 (48%), Gaps = 3/176 (1%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AIVG PNVGKS+L N L+ + A+V + G TRD + + GV ++DTAGI + ++ Sbjct: 230 AIVGRPNVGKSSLLNHLLHEDKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETED 289 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 + + +++ AI +A L++ ++++ +T D + K +I+ + ++ Sbjct: 290 -KVERIGVERSRKAIEQADLVMLVLNASEELTDEDKELIQATSGKKRIVILNKTDLPQKL 348 Query: 126 AQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 E+ D E++ S G +L I ++F N ++ N R+ Sbjct: 349 NMDEVRELVPED--ELITTSVLKKTGVDKLEEKIAELFFGGIENSQSTIMVTNARH 402 >gi|113478139|ref|YP_724200.1| tRNA modification GTPase TrmE [Trichodesmium erythraeum IMS101] gi|123056073|sp|Q10VJ7|MNME_TRIEI RecName: Full=tRNA modification GTPase mnmE gi|110169187|gb|ABG53727.1| tRNA modification GTPase trmE [Trichodesmium erythraeum IMS101] Length = 467 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 49/162 (30%), Positives = 86/162 (53%), Gaps = 12/162 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKS+L N A+V + PG TRD + Q ++ G+ ++DTAGI + + Sbjct: 229 VAIIGRPNVGKSSLLNAWSHSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETE 288 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD-- 122 + + K +++ A A ++L ID++ G T D I + + K+ +I++ NK+D Sbjct: 289 D-RVEKIGVERSCQAAESADIVLLTIDAQVGWTELDEVI--YQQVKHRFLILIINKVDQV 345 Query: 123 ----TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 + + + F Y K +V +A ++ G EL + I Sbjct: 346 DLVHSELIRSIF---YPETIKNVVATAAINNQGIEELEAAIL 384 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 38/124 (30%), Positives = 69/124 (55%), Gaps = 5/124 (4%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 L++A++GRPNVGKS+L+N +R + G TRD V P+++ DTAG+R+ Sbjct: 227 LKVAIIGRPNVGKSSLLNAWSHSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRE 286 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 + +E+ V++S Q+ + + ++ +DA + + + D I V + ++L +NK Sbjct: 287 TE---DRVEKIGVERSCQAAESADIVLLTIDAQVGWTELDEVIYQQVKH--RFLILIINK 341 Query: 324 WDMV 327 D V Sbjct: 342 VDQV 345 >gi|227893842|ref|ZP_04011647.1| tRNA modification GTP-binding protein TrmE [Lactobacillus ultunensis DSM 16047] gi|227864331|gb|EEJ71752.1| tRNA modification GTP-binding protein TrmE [Lactobacillus ultunensis DSM 16047] Length = 461 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 54/177 (30%), Positives = 90/177 (50%), Gaps = 6/177 (3%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AIVG PNVGKS+L N L + A+V + G TRD L + GV ++DTAGI ++ Sbjct: 228 AIVGRPNVGKSSLLNYLTQSDKAIVTDVAGTTRDTLEEYVSVKGVPLELIDTAGIHHTED 287 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 + K ++++ A+ A L+L LID+ +T D A+ + K II+ NK D + Sbjct: 288 -KVEKIGVERSKKALERADLVLLLIDASQDLTAEDKALIEETKSKK--RIIILNKSD--L 342 Query: 126 AQR-NFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 Q+ ++ L +++ S + +L +I K+F N +++ N+R Sbjct: 343 GQKITVDQMKKLTGSDVISTSILQEKNLDDLEEMINKLFFAGIENSNDQIMVTNQRQ 399 Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 70/123 (56%), Gaps = 5/123 (4%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 L A+VGRPNVGKS+L+N L ++ + +G TRD++ + K P+E+ DTAG+ Sbjct: 225 LATAIVGRPNVGKSSLLNYLTQSDKAIVTDVAGTTRDTLEEYVSVKGVPLELIDTAGIHH 284 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 + +E+ V++S +++ + ++L+DA+ +D +++ + ++ LNK Sbjct: 285 TE---DKVEKIGVERSKKALERADLVLLLIDASQDLTAEDKALIEETKSKKRIII--LNK 339 Query: 324 WDM 326 D+ Sbjct: 340 SDL 342 >gi|188533139|ref|YP_001906936.1| GTP-binding protein Era [Erwinia tasmaniensis Et1/99] gi|188028181|emb|CAO96039.1| GTP-binding protein [Erwinia tasmaniensis Et1/99] Length = 301 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 49/177 (27%), Positives = 89/177 (50%), Gaps = 8/177 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N+L+ +K+++ P TR R+ G VDT G+ + Sbjct: 11 IAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGIHTEGQYQAIYVDTPGLHMEE 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN +I + +++F+++ TP D + + L+ +P+++ NK+D Sbjct: 71 KRAINRLMNRAASSSIGDVEMVIFVVEGTR-WTPDDEMVLNKLKDGKVPVLLAINKVDN- 128 Query: 125 IAQRNF------YEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 I ++ + ++F ++V ISAE + +++ K + + P E I Sbjct: 129 ITDKSILLPHLQFLGQQMNFMDVVPISAEKGNNVDTIANIVRKRLPEAEHHFPEEYI 185 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 39/133 (29%), Positives = 68/133 (51%), Gaps = 3/133 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA+VGRPNVGKSTL+N+LLG +T + TR + + DT G+ Sbjct: 11 IAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGIHTEGQYQAIYVDTPGLHMEE 70 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + ++ + + + S+ E I +++ T + D +++ + + V+LA+NK D Sbjct: 71 K--RAINRLMNRAASSSIGDVEMVIFVVEGT-RWTPDDEMVLNKLKDGKVPVLLAINKVD 127 Query: 326 MVSDKLNLLQDLR 338 ++DK LL L+ Sbjct: 128 NITDKSILLPHLQ 140 >gi|90961107|ref|YP_535023.1| tRNA modification GTPase TrmE [Lactobacillus salivarius UCC118] gi|227892406|ref|ZP_04010211.1| tRNA modification GTPase TrmE [Lactobacillus salivarius ATCC 11741] gi|122449446|sp|Q1WVH7|MNME_LACS1 RecName: Full=tRNA modification GTPase mnmE gi|90820301|gb|ABD98940.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase [Lactobacillus salivarius UCC118] gi|227865813|gb|EEJ73234.1| tRNA modification GTPase TrmE [Lactobacillus salivarius ATCC 11741] Length = 464 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 41/136 (30%), Positives = 80/136 (58%), Gaps = 6/136 (4%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L A+VGRPNVGKS+L+N LL ++ + +G TRD + N + P+++ D Sbjct: 221 KVLREGLATAIVGRPNVGKSSLLNHLLHEDKAIVTDIAGTTRDVIEEYVNVRGVPLKLID 280 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ + +E+ V++S +++ + +++L+A+ +D ++ + +G Sbjct: 281 TAGIRETE---DKVERIGVERSRKAIEQADLVMLVLNASEELTDEDKELIQA--TSGKKR 335 Query: 318 VLALNKWDMVSDKLNL 333 ++ LNK D+ KLN+ Sbjct: 336 IVILNKTDL-PQKLNM 350 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 45/176 (25%), Positives = 85/176 (48%), Gaps = 3/176 (1%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AIVG PNVGKS+L N L+ + A+V + G TRD + + GV ++DTAGI + ++ Sbjct: 230 AIVGRPNVGKSSLLNHLLHEDKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETED 289 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 + + +++ AI +A L++ ++++ +T D + K +I+ + ++ Sbjct: 290 -KVERIGVERSRKAIEQADLVMLVLNASEELTDEDKELIQATSGKKRIVILNKTDLPQKL 348 Query: 126 AQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 E+ D E++ S G +L I ++F N ++ N R+ Sbjct: 349 NMDEVRELVPED--ELITTSVLKKTGVDKLEEKIAELFFGGIENSQSTIMVTNARH 402 >gi|324991080|gb|EGC23014.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis SK353] Length = 457 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 46/137 (33%), Positives = 84/137 (61%), Gaps = 7/137 (5%) Query: 207 AVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSR 266 A++GRPNVGKS+L+N LL ++ + G TRD + N K P+++ DTAG+R+ Sbjct: 227 AIIGRPNVGKSSLLNNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDD 286 Query: 267 ITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 + +EQ V++S ++++ + +++L+A+ +QD ++++ + + +VL LNK D+ Sbjct: 287 L---VEQIGVERSKKALQEADLVLLVLNASESLTEQDRQLLE-ISQDSNRIVL-LNKTDL 341 Query: 327 VSDKLNLLQDLRTKAIK 343 +K+ L Q L AIK Sbjct: 342 -EEKIELDQ-LPADAIK 356 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 69/118 (58%), Gaps = 5/118 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+++ A+V + G TRD + I GV ++DTAGI + + Sbjct: 227 AIIGRPNVGKSSLLNNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDD 286 Query: 66 CSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + +Q+ ++++ A+ EA L+L ++++ +T D + + N I++ NK D Sbjct: 287 --LVEQIGVERSKKALQEADLVLLVLNASESLTEQDRQLLEISQDSN--RIVLLNKTD 340 >gi|51473927|ref|YP_067684.1| tRNA modification GTPase TrmE [Rickettsia typhi str. Wilmington] gi|81389958|sp|Q68VZ0|MNME_RICTY RecName: Full=tRNA modification GTPase mnmE gi|51460239|gb|AAU04202.1| thiophene and furan oxidation protein; tRNA modification GTPase [Rickettsia typhi str. Wilmington] Length = 445 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 40/130 (30%), Positives = 76/130 (58%), Gaps = 7/130 (5%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 ++ L++A++G PN GKS+L+N L+ N + + +G TRD + + +PI + DTA Sbjct: 212 LNNGLKLAIIGPPNTGKSSLLNFLMQRNIAIVSNIAGTTRDIIEGHLDIGGYPIILQDTA 271 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFN-TGHAVV 318 G+R S T+ +E++ +K+++ S +T I++ DA EK DL I + + + + Sbjct: 272 GIRAES--TDIIEREGIKRAINSAKTANIKIIMFDA----EKLDLSINNDIIDLIDENTI 325 Query: 319 LALNKWDMVS 328 + +NK D++ Sbjct: 326 VIINKIDLIE 335 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/56 (46%), Positives = 36/56 (64%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 +AI+G PN GKS+L N L+++ +A+V N G TRD + G I G + DTAGI Sbjct: 218 LAIIGPPNTGKSSLLNFLMQRNIAIVSNIAGTTRDIIEGHLDIGGYPIILQDTAGI 273 >gi|37572951|dbj|BAC98601.1| putative tRNA modification GTPase trmE [Oryza sativa Japonica Group] Length = 552 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 53/166 (31%), Positives = 87/166 (52%), Gaps = 10/166 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKS+L N K + A+V G TRD + I+G+ ++DTAGI + Sbjct: 308 VAIIGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVVEANVSIHGIPITLLDTAGIRETD 367 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITS--FLRKKN----IPIIIVS 118 + + K +++E A A LI+ I + G T D + + KK+ +P+++V Sbjct: 368 DI-VEKIGVERSEAAALGADLIIMTISAVDGWTEDDTKLIEHVLISKKSSGAPVPMVLVI 426 Query: 119 NKMDTR--IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKI 162 NK+D I+ F + + + FK+ V+ A G SEL I ++ Sbjct: 427 NKVDCAPFISGEQFEQFHGV-FKKHVQTCAVTGKGISELEKAIIEV 471 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 46/184 (25%), Positives = 93/184 (50%), Gaps = 13/184 (7%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + L++A++GRPNVGKS+L+N R + +G TRD V + + PI + D Sbjct: 300 KLLQSGLQVAIIGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVVEANVSIHGIPITLLD 359 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVF----NT 313 TAG+R+ I E + V++S + + I+ + A + + D ++++ V ++ Sbjct: 360 TAGIRETDDIVEKI---GVERSEAAALGADLIIMTISAVDGWTEDDTKLIEHVLISKKSS 416 Query: 314 GHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 G V + L V +K++ + + + + ++ T + TG+G+ +L +++E Sbjct: 417 GAPVPMVL-----VINKVDCAPFISGEQFEQFHGVFKKHVQTCA-VTGKGISELEKAIIE 470 Query: 374 INKL 377 + L Sbjct: 471 VRGL 474 >gi|291548774|emb|CBL25036.1| tRNA modification GTPase trmE [Ruminococcus torques L2-14] Length = 462 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 49/162 (30%), Positives = 82/162 (50%), Gaps = 7/162 (4%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 I+G PN GKS+L N L A+V + G TRD L Q + G+ NI+DTAGI + Sbjct: 223 ILGKPNAGKSSLLNILAGHDRAIVTDIEGTTRDVLEEQIRLQGLTLNIIDTAGIR--QTD 280 Query: 67 SIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 I ++M D+ + EA LI++++D+ + D I + K I++ + +DT + Sbjct: 281 DIVEKMGVDKAKEYAKEADLIIYVVDASRNLDENDEKIFDLIYDKRTVILLNKSDLDTVV 340 Query: 126 AQRNFYEIYSLDFKE----IVEISAEHDLGTSELHSVIFKIF 163 + E S + ++ ISA+ + G EL + + +F Sbjct: 341 TEEMIRERISQKGVQKQIPVIAISAKEEQGIKELENTVKAMF 382 Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 36/127 (28%), Positives = 69/127 (54%), Gaps = 5/127 (3%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + ++ ++G+PN GKS+L+N L G++R + G TRD + + + I DTA Sbjct: 215 MKEGIQTVILGKPNAGKSSLLNILAGHDRAIVTDIEGTTRDVLEEQIRLQGLTLNIIDTA 274 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R+ I E + V K+ + + + I ++DA+ ++ D +I D +++ V+ Sbjct: 275 GIRQTDDIVEKM---GVDKAKEYAKEADLIIYVVDASRNLDENDEKIFDLIYD--KRTVI 329 Query: 320 ALNKWDM 326 LNK D+ Sbjct: 330 LLNKSDL 336 >gi|322389428|ref|ZP_08062982.1| thiophene and furan oxidation protein ThdF [Streptococcus parasanguinis ATCC 903] gi|321143916|gb|EFX39340.1| thiophene and furan oxidation protein ThdF [Streptococcus parasanguinis ATCC 903] Length = 466 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 48/158 (30%), Positives = 87/158 (55%), Gaps = 18/158 (11%) Query: 182 EESPKENI---TSEGKSSVKNISKPLR----------IAVVGRPNVGKSTLINRLLGYNR 228 EE+ E I TSE ++ + N+ K R A++GRPNVGKS+L+N LL + Sbjct: 198 EEATTEIIREKTSEFEALLTNLLKTARRGKILREGISTAIIGRPNVGKSSLLNNLLREEK 257 Query: 229 LLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCET 288 + G TRD + N P+++ DTAG+R+ I +EQ V++S ++++ + Sbjct: 258 AIVTDIEGTTRDVIEEYVNINGVPLKLVDTAGIRETEDI---VEQIGVERSKKALKEADL 314 Query: 289 TIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 +++L+A+ P QD ++++ ++ ++ LNK D+ Sbjct: 315 VLLVLNASEPLTDQDRQLLEISQDSNR--IILLNKVDL 350 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 43/118 (36%), Positives = 73/118 (61%), Gaps = 5/118 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L++++ A+V + G TRD + INGV +VDTAGI + ++ Sbjct: 236 AIIGRPNVGKSSLLNNLLREEKAIVTDIEGTTRDVIEEYVNINGVPLKLVDTAGIRETED 295 Query: 66 CSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 I +Q+ ++++ A+ EA L+L ++++ +T D + + N II+ NK+D Sbjct: 296 --IVEQIGVERSKKALKEADLVLLVLNASEPLTDQDRQLLEISQDSN--RIILLNKVD 349 >gi|148244712|ref|YP_001219406.1| GTP-binding protein Era [Candidatus Vesicomyosocius okutanii HA] gi|146326539|dbj|BAF61682.1| GTP-binding protein Era [Candidatus Vesicomyosocius okutanii HA] Length = 316 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 41/118 (34%), Positives = 64/118 (54%), Gaps = 1/118 (0%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 I +VG PNVGKSTL N L+ +K+++ + P TR R++ + VDT GI G Sbjct: 30 IGVVGRPNVGKSTLINELIGRKLSITSHRPQTTRHRIHAIDTTDNYQMVFVDTPGIHMGN 89 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 +I MN LAI + +IL+LI+ T D + + + ++P+I+ NK+D Sbjct: 90 YKAINSYMNRVASLAIMDVDVILWLIEV-GKWTKEDLRVLEHITQIDVPVILCINKID 146 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 58/121 (47%), Gaps = 5/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 I VVGRPNVGKSTLIN L+G +T + TR + N+ + DT G+ + Sbjct: 30 IGVVGRPNVGKSTLINELIGRKLSITSHRPQTTRHRIHAIDTTDNYQMVFVDTPGIHMGN 89 Query: 266 -RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 + S + ++ V I+ L + K+DLR+++ + V+L +NK Sbjct: 90 YKAINSYMNRVASLAIMDV----DVILWLIEVGKWTKEDLRVLEHITQIDVPVILCINKI 145 Query: 325 D 325 D Sbjct: 146 D 146 >gi|296876607|ref|ZP_06900657.1| tRNA modification GTPase TrmE [Streptococcus parasanguinis ATCC 15912] gi|296432426|gb|EFH18223.1| tRNA modification GTPase TrmE [Streptococcus parasanguinis ATCC 15912] Length = 466 Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 48/158 (30%), Positives = 87/158 (55%), Gaps = 18/158 (11%) Query: 182 EESPKENI---TSEGKSSVKNISKPLR----------IAVVGRPNVGKSTLINRLLGYNR 228 EE+ E I TSE ++ + N+ K R A++GRPNVGKS+L+N LL + Sbjct: 198 EEATTEIIREKTSEFEALLTNLLKTARRGKILREGISTAIIGRPNVGKSSLLNNLLREEK 257 Query: 229 LLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCET 288 + G TRD + N P+++ DTAG+R+ I +EQ V++S ++++ + Sbjct: 258 AIVTDIEGTTRDVIEEYVNINGVPLKLVDTAGIRETEDI---VEQIGVERSKKALKEADL 314 Query: 289 TIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 +++L+A+ P QD ++++ ++ ++ LNK D+ Sbjct: 315 VLLVLNASEPLTDQDRQLLEISQDSNR--IILLNKVDL 350 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 43/118 (36%), Positives = 73/118 (61%), Gaps = 5/118 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L++++ A+V + G TRD + INGV +VDTAGI + ++ Sbjct: 236 AIIGRPNVGKSSLLNNLLREEKAIVTDIEGTTRDVIEEYVNINGVPLKLVDTAGIRETED 295 Query: 66 CSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 I +Q+ ++++ A+ EA L+L ++++ +T D + + N II+ NK+D Sbjct: 296 --IVEQIGVERSKKALKEADLVLLVLNASEPLTDQDRQLLEISQDSN--RIILLNKVD 349 >gi|188994926|ref|YP_001929178.1| tRNA modification GTPase TrmE [Porphyromonas gingivalis ATCC 33277] gi|188594606|dbj|BAG33581.1| tRNA modification GTPase [Porphyromonas gingivalis ATCC 33277] Length = 518 Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 51/179 (28%), Positives = 91/179 (50%), Gaps = 13/179 (7%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + + +A+VG NVGKSTL+N LLG R + G TRD++ + + + DTA Sbjct: 268 VKRGIPVAIVGTTNVGKSTLLNTLLGEERAIVSDIHGTTRDTIEDTMHIGGYLFRFVDTA 327 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFN--TGHAV 317 G+R+ ESL +++S ++ + + ++D T E L + S+++ V Sbjct: 328 GLRETEDTIESL---GIERSRSKIKEADIILAVVDGTRISEANQLDYIKSIWDEREERTV 384 Query: 318 VLALNKWDMV--SDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEI 374 +L +NK + + +D++ L + L+TK I IS R G G+D+L + +I Sbjct: 385 ILLVNKSESLAEADRIGLSEALQTKLSTPTRPI------FISAREGRGIDELKGELTQI 437 Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 55/198 (27%), Positives = 96/198 (48%), Gaps = 25/198 (12%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG NVGKSTL N L+ ++ A+V + G TRD + I G +F VDTAG+ + + Sbjct: 274 VAIVGTTNVGKSTLLNTLLGEERAIVSDIHGTTRDTIEDTMHIGGYLFRFVDTAGLRETE 333 Query: 65 NCSIAKQMNDQTELAINEAHLILFLID----SKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + +I +++ I EA +IL ++D S+A Y +I + ++ +I++ NK Sbjct: 334 D-TIESLGIERSRSKIKEADIILAVVDGTRISEANQLDYIKSI--WDEREERTVILLVNK 390 Query: 121 MDTRIAQRNFYEIYSLDFKEIVE-----------ISAEHDLGTSELHSVIFKIFKQKYPN 169 ++ E + E ++ ISA G EL + +I + N Sbjct: 391 SES------LAEADRIGLSEALQTKLSTPTRPIFISAREGRGIDELKGELTQIMETSGAN 444 Query: 170 HPLEMIENNKRNEESPKE 187 ++I +N R+ + +E Sbjct: 445 EA-DLIVSNARHHQLLRE 461 >gi|171779779|ref|ZP_02920735.1| hypothetical protein STRINF_01616 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171281881|gb|EDT47315.1| hypothetical protein STRINF_01616 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 457 Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 41/140 (29%), Positives = 80/140 (57%), Gaps = 6/140 (4%) Query: 187 ENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISW 246 EN+ + K K + + L A++GRPNVGKS+L+N LL ++ + G TRD + Sbjct: 208 ENLLATAKRG-KILREGLSTAIIGRPNVGKSSLLNNLLREDKAIVTDIEGTTRDVIEEYV 266 Query: 247 NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRI 306 N K P+++ DTAG+R+ + E + V++S +++ + +++L+++ P QD + Sbjct: 267 NIKGVPLKLVDTAGIRETDDVVEKI---GVERSKKALEEADLVLLVLNSSEPLTDQDRAL 323 Query: 307 VDSVFNTGHAVVLALNKWDM 326 ++ ++ ++ LNK D+ Sbjct: 324 LELSKDSNR--IILLNKTDL 341 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 43/117 (36%), Positives = 68/117 (58%), Gaps = 3/117 (2%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+++ A+V + G TRD + I GV +VDTAGI + + Sbjct: 227 AIIGRPNVGKSSLLNNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLVDTAGIRETDD 286 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + K ++++ A+ EA L+L +++S +T D A+ + N II+ NK D Sbjct: 287 V-VEKIGVERSKKALEEADLVLLVLNSSEPLTDQDRALLELSKDSN--RIILLNKTD 340 >gi|115353264|ref|YP_775103.1| tRNA modification GTPase TrmE [Burkholderia ambifaria AMMD] gi|115283252|gb|ABI88769.1| tRNA modification GTPase trmE [Burkholderia ambifaria AMMD] Length = 489 Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 49/188 (26%), Positives = 88/188 (46%), Gaps = 14/188 (7%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + L + + G+PNVGKS+L+N L G + +G TRD V+ + + P+ I DTA Sbjct: 248 LREGLSVVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTA 307 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R+ + +E+ + ++ + + + LLD+ D ++ + F G VV Sbjct: 308 GLRE---TEDEVERIGIARTWSEIERADVVLHLLDSRTGMTADD-EVIAARFPGGVPVVR 363 Query: 320 ALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWK 379 LNK D+ +++ GD+ +S + G+G+D L +L I W+ Sbjct: 364 VLNKTDLTG---------VPACVEHPAAAGDLTEVHLSAKRGDGIDMLRAELLRIAG-WQ 413 Query: 380 TRITTSYL 387 YL Sbjct: 414 AGAEGVYL 421 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 48/164 (29%), Positives = 85/164 (51%), Gaps = 12/164 (7%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 ++ + G PNVGKS+L N L ++A+V G TRD++ + G+ +I+DTAG+ + Sbjct: 253 SVVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRET 312 Query: 64 KN----CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 ++ IA+ ++ I A ++L L+DS+ G+T D I + +P++ V N Sbjct: 313 EDEVERIGIARTWSE-----IERADVVLHLLDSRTGMTADDEVIAARF-PGGVPVVRVLN 366 Query: 120 KMD-TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKI 162 K D T + + + D E V +SA+ G L + + +I Sbjct: 367 KTDLTGVPACVEHPAAAGDLTE-VHLSAKRGDGIDMLRAELLRI 409 >gi|47567864|ref|ZP_00238572.1| GTP-binding protein Era [Bacillus cereus G9241] gi|47555541|gb|EAL13884.1| GTP-binding protein Era [Bacillus cereus G9241] Length = 301 Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 55/187 (29%), Positives = 92/187 (49%), Gaps = 21/187 (11%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 ++I+G PNVGKST NR++ +K+A++ + P TR+++ G N +DT GI K Sbjct: 11 VSIIGRPNVGKSTFLNRIIGQKIAIMSDKPQTTRNKIQGVYTENDSQVIFIDTPGIHKPK 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + M + + E ++LF++++ G + I L++ P+ +V NK+D + Sbjct: 71 H-KLGDFMVKMAQTTLKEVDIVLFMVNAVEGFGRGEEFIIEKLKETKQPVFLVINKID-Q 128 Query: 125 IAQRNFYEIYSL-----DFKEIVEISAEHDLGTSELHSVIFKIFK------QKYP----- 168 + E+ DF EIV ISA L + + S+I I K Q YP Sbjct: 129 VHPEQLLELIDQYRKLHDFAEIVPISA---LDGNNVESLIGTIKKYLPEGPQYYPDNQVT 185 Query: 169 NHPLEMI 175 +HP I Sbjct: 186 DHPERFI 192 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/122 (26%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 ++++GRPNVGKST +NR++G + + TR+ + + + + DT G+ KP Sbjct: 11 VSIIGRPNVGKSTFLNRIIGQKIAIMSDKPQTTRNKIQGVYTENDSQVIFIDTPGIHKPK 70 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L VK + +++ + + +++A F + + I++ + T V L +NK D Sbjct: 71 H---KLGDFMVKMAQTTLKEVDIVLFMVNAVEGFGRGEEFIIEKLKETKQPVFLVINKID 127 Query: 326 MV 327 V Sbjct: 128 QV 129 >gi|239946722|ref|ZP_04698475.1| tRNA modification GTPase TrmE [Rickettsia endosymbiont of Ixodes scapularis] gi|239920998|gb|EER21022.1| tRNA modification GTPase TrmE [Rickettsia endosymbiont of Ixodes scapularis] Length = 445 Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 40/129 (31%), Positives = 77/129 (59%), Gaps = 7/129 (5%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 ++ L++A++G PNVGKS+L+N L+ + + + +G TRD + + +PI + DTA Sbjct: 212 LNSGLKLAIIGPPNVGKSSLLNFLMQRDIAIVSNIAGTTRDIIEGHLDIGGYPIILQDTA 271 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFN-TGHAVV 318 G+R+ S ++ +EQ+ +K+++ S +T + I++ DA EK D I + + N + Sbjct: 272 GIREES--SDIIEQEGIKRAINSAKTADIKIIMFDA----EKLDSSINEDIINLIDENTI 325 Query: 319 LALNKWDMV 327 +NK D++ Sbjct: 326 TIINKIDLI 334 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 43/129 (33%), Positives = 71/129 (55%), Gaps = 9/129 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKS+L N L+++ +A+V N G TRD + G I G + DTAGI + + Sbjct: 218 LAIIGPPNVGKSSLLNFLMQRDIAIVSNIAGTTRDIIEGHLDIGGYPIILQDTAGIRE-E 276 Query: 65 NCSIAKQMNDQTELAINE---AHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 + I +Q + + AIN A + + + D++ + + I + + + I II NK+ Sbjct: 277 SSDIIEQ--EGIKRAINSAKTADIKIIMFDAEKLDSSINEDIINLIDENTITII---NKI 331 Query: 122 DTRIAQRNF 130 D A + F Sbjct: 332 DLIEASKIF 340 >gi|229551112|ref|ZP_04439837.1| tRNA modification GTP-binding protein TrmE [Lactobacillus rhamnosus LMS2-1] gi|258541097|ref|YP_003175596.1| tRNA modification GTPase TrmE [Lactobacillus rhamnosus Lc 705] gi|229315504|gb|EEN81477.1| tRNA modification GTP-binding protein TrmE [Lactobacillus rhamnosus LMS2-1] gi|257152773|emb|CAR91745.1| tRNA modification GTPase MnmE [Lactobacillus rhamnosus Lc 705] Length = 462 Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 44/143 (30%), Positives = 80/143 (55%), Gaps = 7/143 (4%) Query: 195 SSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIE 254 S K + + L A+VGRPNVGKS+L+N +L + + +G TRD + N + P++ Sbjct: 216 SQGKVLREGLATAIVGRPNVGKSSLLNHMLHEEKAIVTDVAGTTRDVLEEYVNVRGVPLK 275 Query: 255 IFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTG 314 + DTAG+ T+ +E+ V++S Q++ + +++LD + P +D +++ + + Sbjct: 276 LVDTAGIHDT---TDKVEKIGVERSRQAITQADLILLVLDQSEPLTTEDKQLLAATADKK 332 Query: 315 HAVVLALNKWDMVS--DKLNLLQ 335 +V LNK D+ + D LLQ Sbjct: 333 RIIV--LNKQDLPARLDTAALLQ 353 Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 57/178 (32%), Positives = 88/178 (49%), Gaps = 7/178 (3%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AIVG PNVGKS+L N ++ ++ A+V + G TRD L + GV +VDTAGI D + Sbjct: 228 AIVGRPNVGKSSLLNHMLHEEKAIVTDVAGTTRDVLEEYVNVRGVPLKLVDTAGIHDTTD 287 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD--T 123 + K +++ AI +A LIL ++D +T D + + K IIV NK D Sbjct: 288 -KVEKIGVERSRQAITQADLILLVLDQSEPLTTEDKQLLAATADKK--RIIVLNKQDLPA 344 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 R+ ++ +D EI++ + G L I K+F N ++ +N R Sbjct: 345 RLDTAALLQL--VDADEIIKTAIPTSDGMDALDERIAKLFFGGIENSQGTVMVSNARQ 400 >gi|332638283|ref|ZP_08417146.1| GTPase Era [Weissella cibaria KACC 11862] Length = 302 Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 50/165 (30%), Positives = 86/165 (52%), Gaps = 12/165 (7%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VGRPNVGKSTL+N+++G + ++ TR+ + + I DT G+ KP Sbjct: 11 VALVGRPNVGKSTLLNKMIGEKIAIMSPKAQTTRNKIQGIYTTDEGQIVFMDTPGIHKPH 70 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 SL VK +M ++R + L++A P D I++ + +T V L +NK D Sbjct: 71 N---SLGDFMVKTAMSALREADMVWFLVNADEPRGAGDDFIINRLKDTKTPVYLIINKID 127 Query: 326 MV--SDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLM 368 +V +D L ++ D R + + +I+ IS G+G+ +L+ Sbjct: 128 LVNPADLLTIIDDYRQQM-----EFAEIF--PISALKGDGVPELL 165 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 52/193 (26%), Positives = 89/193 (46%), Gaps = 13/193 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTL N+++ +K+A++ TR+++ G + +DT GI Sbjct: 11 VALVGRPNVGKSTLLNKMIGEKIAIMSPKAQTTRNKIQGIYTTDEGQIVFMDTPGIHKPH 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N S+ M A+ EA ++ FL+++ D I + L+ P+ ++ NK+D Sbjct: 71 N-SLGDFMVKTAMSALREADMVWFLVNADEPRGAGDDFIINRLKDTKTPVYLIINKIDL- 128 Query: 125 IAQRNFYEI-----YSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNK 179 + + I ++F EI ISA G EL + +P + I ++ Sbjct: 129 VNPADLLTIIDDYRQQMEFAEIFPISALKGDGVPELLDFAMDKMAEGPQYYPADQITDH- 187 Query: 180 RNEESPKENITSE 192 P+ I SE Sbjct: 188 -----PERFIMSE 195 >gi|186681007|ref|YP_001864203.1| GTP-binding protein Era [Nostoc punctiforme PCC 73102] gi|186463459|gb|ACC79260.1| GTP-binding protein Era [Nostoc punctiforme PCC 73102] Length = 318 Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 48/162 (29%), Positives = 75/162 (46%), Gaps = 6/162 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 I IVG PNVGKSTL N+LV +K+A+ TR+RL G VDT GI Sbjct: 29 IGIVGRPNVGKSTLMNQLVGQKIAITSPIAQTTRNRLRGILTTPEAQLIFVDTPGIHK-P 87 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + + + ++AI ++LF++D D I L + P+I+ NK D + Sbjct: 88 HHQLGEVLVQNAKIAIESVDVVLFVVDGAVACGSGDRYIAELLSRSKTPVILGVNKTDQQ 147 Query: 125 IAQRNFYEIYSLDFK-----EIVEISAEHDLGTSELHSVIFK 161 + F + EIV+ SA+ G +L ++ + Sbjct: 148 PSDSQFLDDSYAQMAQSHEWEIVKFSAKTSAGLPQLQELLIE 189 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 46/176 (26%), Positives = 80/176 (45%), Gaps = 10/176 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 I +VGRPNVGKSTL+N+L+G +T + TR+ + + DT G+ KP Sbjct: 29 IGIVGRPNVGKSTLMNQLVGQKIAITSPIAQTTRNRLRGILTTPEAQLIFVDTPGIHKPH 88 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + V+ + ++ + + + ++D + D I + + + V+L +NK D Sbjct: 89 H---QLGEVLVQNAKIAIESVDVVLFVVDGAVACGSGDRYIAELLSRSKTPVILGVNKTD 145 Query: 326 MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG---LDDLMVSVLEINKLW 378 L D + + Q + I S +T G L +L++ LEI L+ Sbjct: 146 QQPSDSQFLDD----SYAQMAQSHEWEIVKFSAKTSAGLPQLQELLIEHLEIGPLY 197 >gi|295111471|emb|CBL28221.1| GTPase of unknown function. [Synergistetes bacterium SGP1] Length = 81 Score = 70.5 bits (171), Expect = 6e-10, Method: Composition-based stats. Identities = 30/58 (51%), Positives = 43/58 (74%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 AI+G PNVGKS+LFNRL+ ++ ++V + PG+TRDR+YG+A G F ++DT G G Sbjct: 5 AIIGRPNVGKSSLFNRLIGRRESIVDDAPGVTRDRIYGEAEWRGRSFYVIDTGGNPGG 62 Score = 53.5 bits (127), Expect = 8e-05, Method: Composition-based stats. Identities = 22/54 (40%), Positives = 31/54 (57%) Query: 207 AVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAG 260 A++GRPNVGKS+L NRL+G + G+TRD + W+ + DT G Sbjct: 5 AIIGRPNVGKSSLFNRLIGRRESIVDDAPGVTRDRIYGEAEWRGRSFYVIDTGG 58 >gi|293400090|ref|ZP_06644236.1| tRNA modification GTPase TrmE [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306490|gb|EFE47733.1| tRNA modification GTPase TrmE [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 443 Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 38/135 (28%), Positives = 77/135 (57%), Gaps = 5/135 (3%) Query: 192 EGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNH 251 E S + + + ++ A++G+PNVGKS+L+N LL ++ + +G TRD V + Sbjct: 208 ERAESGQMMKEGIKTAIIGKPNVGKSSLLNALLEEDKAIVTEIAGTTRDIVEGHIHLGGL 267 Query: 252 PIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVF 311 + + DTAG+R+ + E + +++SM+++ + I++LDA+ P +++D +++ Sbjct: 268 TLNLIDTAGIRETEDVVEKI---GIERSMKAIEDAQLIILVLDASRPLDEEDQQLMQMTE 324 Query: 312 NTGHAVVLALNKWDM 326 N +V NK D+ Sbjct: 325 NKTRIIV--YNKKDL 337 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 41/117 (35%), Positives = 66/117 (56%), Gaps = 3/117 (2%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+++ A+V G TRD + G + G+ N++DTAGI + ++ Sbjct: 223 AIIGKPNVGKSSLLNALLEEDKAIVTEIAGTTRDIVEGHIHLGGLTLNLIDTAGIRETED 282 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + K +++ AI +A LI+ ++D+ + D + K IIV NK D Sbjct: 283 V-VEKIGIERSMKAIEDAQLIILVLDASRPLDEEDQQLMQMTENKT--RIIVYNKKD 336 >gi|222640528|gb|EEE68660.1| hypothetical protein OsJ_27256 [Oryza sativa Japonica Group] Length = 415 Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 53/166 (31%), Positives = 87/166 (52%), Gaps = 10/166 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKS+L N K + A+V G TRD + I+G+ ++DTAGI + Sbjct: 171 VAIIGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVVEANVSIHGIPITLLDTAGIRETD 230 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITS--FLRKKN----IPIIIVS 118 + + K +++E A A LI+ I + G T D + + KK+ +P+++V Sbjct: 231 DI-VEKIGVERSEAAALGADLIIMTISAVDGWTEDDTKLIEHVLISKKSSGAPVPMVLVI 289 Query: 119 NKMDTR--IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKI 162 NK+D I+ F + + + FK+ V+ A G SEL I ++ Sbjct: 290 NKVDCAPFISGEQFEQFHGV-FKKHVQTCAVTGKGISELEKAIIEV 334 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 41/134 (30%), Positives = 71/134 (52%), Gaps = 9/134 (6%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + L++A++GRPNVGKS+L+N R + +G TRD V + + PI + D Sbjct: 163 KLLQSGLQVAIIGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVVEANVSIHGIPITLLD 222 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVF----NT 313 TAG+R+ I E + V++S + + I+ + A + + D ++++ V ++ Sbjct: 223 TAGIRETDDIVEKI---GVERSEAAALGADLIIMTISAVDGWTEDDTKLIEHVLISKKSS 279 Query: 314 GHAV--VLALNKWD 325 G V VL +NK D Sbjct: 280 GAPVPMVLVINKVD 293 >gi|322834126|ref|YP_004214153.1| GTP-binding protein Era [Rahnella sp. Y9602] gi|321169327|gb|ADW75026.1| GTP-binding protein Era [Rahnella sp. Y9602] Length = 301 Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 52/183 (28%), Positives = 90/183 (49%), Gaps = 20/183 (10%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYG-------QAIINGVIFNIVDT 57 +AIVG PNVGKSTL N L+ +K+++ P TR R+ G QAI VDT Sbjct: 11 VAIVGRPNVGKSTLLNELLGQKISITSRKPQTTRHRIMGIHTEGPYQAI-------YVDT 63 Query: 58 AGIADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIV 117 G+ + +I + MN +I + L++F+++ TP D + + LR P+++ Sbjct: 64 PGLHIEEKRAINRLMNRAASSSIGDVELVIFVVEG-THWTPDDEMVVNKLRDLKSPVLLA 122 Query: 118 SNKMD-----TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPL 172 NK+D +++ + ++F +IV ISAE + +++ K + + P Sbjct: 123 INKIDNVTDKSKLLPHLQFLSEQMNFVDIVPISAEKGTNVDTIAALVRKRLPEAVHHFPE 182 Query: 173 EMI 175 + I Sbjct: 183 DYI 185 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 50/167 (29%), Positives = 78/167 (46%), Gaps = 9/167 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMR-KP 264 +A+VGRPNVGKSTL+N LLG +T + TR + + DT G+ + Sbjct: 11 VAIVGRPNVGKSTLLNELLGQKISITSRKPQTTRHRIMGIHTEGPYQAIYVDTPGLHIEE 70 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 R L + S+ V E I +++ T + D +V+ + + V+LA+NK Sbjct: 71 KRAINRLMNRAASSSIGDV---ELVIFVVEGT-HWTPDDEMVVNKLRDLKSPVLLAINKI 126 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSV 371 D V+DK LL L+ + Q+ + I IS G +D + V Sbjct: 127 DNVTDKSKLLPHLQFLS----EQMNFVDIVPISAEKGTNVDTIAALV 169 >gi|50364829|ref|YP_053254.1| tRNA modification GTPase TrmE [Mesoplasma florum L1] gi|81392031|sp|Q6F2A3|MNME_MESFL RecName: Full=tRNA modification GTPase mnmE gi|50363385|gb|AAT75370.1| tRNA modification GTPase [Mesoplasma florum L1] Length = 452 Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 90/163 (55%), Gaps = 12/163 (7%) Query: 188 NITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWN 247 N+ K ++KN + ++ A+VG+ NVGKS+L+N LL ++ + G TRD V+ N Sbjct: 203 NLLKRSKMAIKN-TNGIKTAIVGKTNVGKSSLLNALLNEDKAIVTDIHGTTRDIVTGEIN 261 Query: 248 WKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIV 307 +N + + DTAG+R+ + I E L ++KS++ + E + ++D ++++ I Sbjct: 262 LENISLNLIDTAGIRETTDIVEGL---GIEKSLKIIDEAELVLFVVDFKSINDEENKMIF 318 Query: 308 DSVFNTGHAVVLALNKWDMVSD-KLNLLQDLR-----TKAIKN 344 D + N + +L NK + ++D + N ++DL T AI N Sbjct: 319 DKLENKNY--ILVFNKSEFINDIERNKIKDLHNNFVYTSAINN 359 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 43/116 (37%), Positives = 65/116 (56%), Gaps = 5/116 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AIVG NVGKS+L N L+ + A+V + G TRD + G+ + + N++DTAGI + Sbjct: 221 AIVGKTNVGKSSLLNALLNEDKAIVTDIHGTTRDIVTGEINLENISLNLIDTAGIRE--T 278 Query: 66 CSIAKQMNDQTELAI-NEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 I + + + L I +EA L+LF++D K+ + I L KN I+V NK Sbjct: 279 TDIVEGLGIEKSLKIIDEAELVLFVVDFKSINDEENKMIFDKLENKN--YILVFNK 332 >gi|169596815|ref|XP_001791831.1| hypothetical protein SNOG_01177 [Phaeosphaeria nodorum SN15] gi|160707379|gb|EAT90826.2| hypothetical protein SNOG_01177 [Phaeosphaeria nodorum SN15] Length = 385 Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 42/150 (28%), Positives = 82/150 (54%), Gaps = 7/150 (4%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 + +A++G PN GKS+L+NR++G + + ++G TRD V + + ++I D AG+R+ Sbjct: 101 ISVALLGAPNAGKSSLLNRIVGRDAAIVSQEAGTTRDVVEVGVDLGGWLVKIGDMAGLRR 160 Query: 264 PSRITE----SLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 + ++EQ+ +K++ Q + IV+ DAT + + + + G VV+ Sbjct: 161 AGLVGAEAVGAVEQEGIKRAKQRALESDVLIVVQDATAETDPEVMETAKKCVDLGVNVVV 220 Query: 320 ALNKWDMVSDKLNLLQDLRTKAIKNLPQIG 349 A+NK D + D + L+ T A++ ++G Sbjct: 221 AINKIDQL-DNVAFLE--HTWAMRMQSELG 247 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 35/57 (61%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 ++A++GAPN GKS+L NR+V + A+V G TRD + + G + I D AG+ Sbjct: 102 SVALLGAPNAGKSSLLNRIVGRDAAIVSQEAGTTRDVVEVGVDLGGWLVKIGDMAGL 158 >gi|239827759|ref|YP_002950383.1| GTP-binding protein Era [Geobacillus sp. WCH70] gi|239808052|gb|ACS25117.1| GTP-binding protein Era [Geobacillus sp. WCH70] Length = 302 Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 40/118 (33%), Positives = 66/118 (55%), Gaps = 1/118 (0%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 ++IVG PNVGKST NR++ +K+A++ + P TR+++ G + +DT G+ K Sbjct: 11 VSIVGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKIQGVYTTDDAQIIFIDTPGMHKPK 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + + M A+ E LILF+I+++ G D I L+ N P+ +V NK+D Sbjct: 71 H-KLGDFMMKVALNALREVDLILFMINAEEGFGRGDAFIIEQLKAVNTPVFLVINKID 127 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +++VGRPNVGKST +NR++G + + TR+ + + + I DT GM KP Sbjct: 11 VSIVGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKIQGVYTTDDAQIIFIDTPGMHKPK 70 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L +K ++ ++R + + +++A F + D I++ + V L +NK D Sbjct: 71 H---KLGDFMMKVALNALREVDLILFMINAEEGFGRGDAFIIEQLKAVNTPVFLVINKID 127 Query: 326 MV 327 V Sbjct: 128 KV 129 >gi|134297397|ref|YP_001121132.1| tRNA modification GTPase TrmE [Burkholderia vietnamiensis G4] gi|205829126|sp|A4JJ44|MNME_BURVG RecName: Full=tRNA modification GTPase mnmE gi|134140554|gb|ABO56297.1| tRNA modification GTPase trmE [Burkholderia vietnamiensis G4] Length = 464 Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 49/164 (29%), Positives = 86/164 (52%), Gaps = 12/164 (7%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 ++ + G PNVGKS+L N L ++A+V G TRD++ + G+ +I+DTAG+ + Sbjct: 228 SVVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRET 287 Query: 64 KN----CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 ++ IA+ ++ I A ++L L+DS+ G+TP D I + +P++ V N Sbjct: 288 EDEVERIGIARTWSE-----IERADVVLHLLDSRTGMTPEDETIAARF-PDGVPVVRVLN 341 Query: 120 KMD-TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKI 162 K D T + + + D E V +SA+ G L + + +I Sbjct: 342 KTDLTGVPACVEHPAAAGDLTE-VHLSAKRGDGIDMLRAELLRI 384 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 50/188 (26%), Positives = 88/188 (46%), Gaps = 14/188 (7%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + L + + G+PNVGKS+L+N L G + +G TRD V+ + + P+ I DTA Sbjct: 223 LREGLSVVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTA 282 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R+ + +E+ + ++ + + + LLD+ +D I + F G VV Sbjct: 283 GLRETE---DEVERIGIARTWSEIERADVVLHLLDSRTGMTPEDETIA-ARFPDGVPVVR 338 Query: 320 ALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWK 379 LNK D+ +++ GD+ +S + G+G+D L +L I W+ Sbjct: 339 VLNKTDLTG---------VPACVEHPAAAGDLTEVHLSAKRGDGIDMLRAELLRIAG-WQ 388 Query: 380 TRITTSYL 387 YL Sbjct: 389 AGAEGVYL 396 >gi|315659998|ref|ZP_07912856.1| tRNA modification GTPase TrmE [Staphylococcus lugdunensis M23590] gi|315494899|gb|EFU83236.1| tRNA modification GTPase TrmE [Staphylococcus lugdunensis M23590] Length = 471 Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 55/159 (34%), Positives = 86/159 (54%), Gaps = 7/159 (4%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PNVGKS++ N L++ A+V G TRD L + GV +VDTAGI D ++ Sbjct: 238 IVGKPNVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRDTEDI 297 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 + K +++ A+++A LILF+++ +T D T F KN +I++ NK D +A Sbjct: 298 -VEKIGVERSRKALSQADLILFVLNYNEPLTKEDR--TLFEVIKNEDVIVIVNKTD--LA 352 Query: 127 QR-NFYEIYSL-DFKEIVEISAEHDLGTSELHSVIFKIF 163 Q+ N E+ + K +++ S G EL I +F Sbjct: 353 QQLNIEEVQEMIGNKPLIQTSMLKQEGIDELEIQIRDLF 391 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 47/177 (26%), Positives = 92/177 (51%), Gaps = 14/177 (7%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L +VG+PNVGKS+++N L+ N+ + +G TRD + N + P+ + D Sbjct: 228 KIMREGLSTVIVGKPNVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVD 287 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R I E + V++S +++ + + +L+ P K+D + + + N V Sbjct: 288 TAGIRDTEDIVEKI---GVERSRKALSQADLILFVLNYNEPLTKEDRTLFEVIKN--EDV 342 Query: 318 VLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEI 374 ++ +NK D L Q L + ++ + IG+ + S EG+D+L + + ++ Sbjct: 343 IVIVNKTD-------LAQQLNIEEVQEM--IGNKPLIQTSMLKQEGIDELEIQIRDL 390 >gi|313618140|gb|EFR90234.1| GTP-binding protein EngA [Listeria innocua FSL S4-378] Length = 154 Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 80/154 (51%), Gaps = 2/154 (1%) Query: 312 NTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQ-IGDIYINTISGRTGEGLDDLMVS 370 + G A+++ +NKWD ++ + ++ T+ I+ Q + I +S +T + L++L Sbjct: 2 DAGRAIIIVVNKWDAINKDEKTI-NVWTEDIREQFQFLSYAPIVFVSAKTKQRLNNLFPL 60 Query: 371 VLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFLIFCTFP 430 + +++ R+ +S LN + NP P + ++ Y TQ+ PP+F++F P Sbjct: 61 INQVSDNHSLRVQSSMLNDVISDAVAMNPSPMDKGKRLKIFYTTQVAVKPPTFVVFVNDP 120 Query: 431 NKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 + SY+R+L NR+R F G PIR+ + K Sbjct: 121 ELMHFSYERFLENRIREAFPFDGTPIRVIARKRK 154 >gi|284038159|ref|YP_003388089.1| tRNA modification GTPase TrmE [Spirosoma linguale DSM 74] gi|283817452|gb|ADB39290.1| tRNA modification GTPase TrmE [Spirosoma linguale DSM 74] Length = 458 Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 39/117 (33%), Positives = 65/117 (55%), Gaps = 1/117 (0%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PN GKSTL N L+ ++ A+V + PG TRD + + I+G+ F ++DTAG+ + Sbjct: 224 IVGKPNAGKSTLLNALLNEEKAIVSDIPGTTRDVIEDELFIDGIRFRLIDTAGLRQATD- 282 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 I ++T+ + +A L+++L D+K +R P ++V NK+D Sbjct: 283 RIEAIGIERTQQKMRDASLVVYLFDAKNVKADELQTAVDEVRASRKPYLLVGNKLDA 339 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 58/122 (47%), Gaps = 3/122 (2%) Query: 208 VVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRI 267 +VG+PN GKSTL+N LL + + G TRD + + DTAG+R+ Sbjct: 224 IVGKPNAGKSTLLNALLNEEKAIVSDIPGTTRDVIEDELFIDGIRFRLIDTAGLRQA--- 280 Query: 268 TESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMV 327 T+ +E ++++ Q +R + L DA + VD V + +L NK D + Sbjct: 281 TDRIEAIGIERTQQKMRDASLVVYLFDAKNVKADELQTAVDEVRASRKPYLLVGNKLDAI 340 Query: 328 SD 329 +D Sbjct: 341 TD 342 >gi|187735151|ref|YP_001877263.1| tRNA modification GTPase TrmE [Akkermansia muciniphila ATCC BAA-835] gi|226704777|sp|B2UPK5|MNME_AKKM8 RecName: Full=tRNA modification GTPase mnmE gi|187425203|gb|ACD04482.1| tRNA modification GTPase TrmE [Akkermansia muciniphila ATCC BAA-835] Length = 449 Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 37/109 (33%), Positives = 66/109 (60%), Gaps = 6/109 (5%) Query: 190 TSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWK 249 T+EG + + + +R A+ G PNVGKS+L+N LLGY+R + + +G TRD+V S Sbjct: 210 TAEGG---RLLREGIRTAIAGPPNVGKSSLLNTLLGYDRAIVSNIAGTTRDTVEESIQLA 266 Query: 250 NHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 + + DTAG+R+ S + +EQ + ++ +++ T + + + DA+ P Sbjct: 267 GLALRLIDTAGVRESSDV---IEQAGITRTNRALETADLVLEVADASTP 312 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 49/174 (28%), Positives = 74/174 (42%), Gaps = 31/174 (17%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI G PNVGKS+L N L+ A+V N G TRD + + G+ ++DTAG+ + + Sbjct: 224 AIAGPPNVGKSSLLNTLLGYDRAIVSNIAGTTRDTVEESIQLAGLALRLIDTAGVRESSD 283 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPI-------IIVS 118 I + +T A+ A L+L + D+ TP R K+ P +++ Sbjct: 284 V-IEQAGITRTNRALETADLVLEVADAS---TP---------RVKDFPAPVLTAPRLLIL 330 Query: 119 NKMDTRIAQRNFYEIYSLDFKEI--VEISAEHDLGTSELHSVIFKIFKQKYPNH 170 NK D I D+K + + S G EL I + F P Sbjct: 331 NKCDLGIHP---------DWKAVPGIRFSCATGEGRKELEEAIIQAFSSSLPGE 375 >gi|15613930|ref|NP_242233.1| Era/ThdF family GTP-binding protein [Bacillus halodurans C-125] gi|13959358|sp|Q9KD52|ERA_BACHD RecName: Full=GTPase Era gi|10173983|dbj|BAB05086.1| GTP-binding protein (Era/ThdF family) [Bacillus halodurans C-125] Length = 304 Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 42/147 (28%), Positives = 78/147 (53%), Gaps = 7/147 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 ++I+G PNVGKSTL N ++ +K+A++ + P TR+++ G +DT GI K Sbjct: 13 VSIIGRPNVGKSTLLNHVIGQKIAIMSDKPQTTRNKIQGVYTSEDSQIVFIDTPGIHKPK 72 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + M + + E LIL+++D P + I L++ P+I+V NK+D + Sbjct: 73 H-KLGDFMMKVAQNTLKEVDLILYVVDGAEAFGPGEEFIIERLKEAKTPVILVINKID-K 130 Query: 125 IAQRNFYEI-----YSLDFKEIVEISA 146 + + + + +F+E+V +SA Sbjct: 131 VHPDDLLSLIETYRHKHEFEEVVPVSA 157 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 36/137 (26%), Positives = 69/137 (50%), Gaps = 5/137 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 ++++GRPNVGKSTL+N ++G + + TR+ + + ++ I DT G+ KP Sbjct: 13 VSIIGRPNVGKSTLLNHVIGQKIAIMSDKPQTTRNKIQGVYTSEDSQIVFIDTPGIHKPK 72 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L +K + +++ + + ++D F + I++ + V+L +NK D Sbjct: 73 H---KLGDFMMKVAQNTLKEVDLILYVVDGAEAFGPGEEFIIERLKEAKTPVILVINKID 129 Query: 326 MV--SDKLNLLQDLRTK 340 V D L+L++ R K Sbjct: 130 KVHPDDLLSLIETYRHK 146 >gi|322374354|ref|ZP_08048868.1| tRNA modification GTPase TrmE [Streptococcus sp. C300] gi|321279854|gb|EFX56893.1| tRNA modification GTPase TrmE [Streptococcus sp. C300] Length = 457 Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 74/120 (61%), Gaps = 5/120 (4%) Query: 207 AVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSR 266 A++GRPNVGKS+L+N LL ++ + +G TRD + N P+++ DTAG+R Sbjct: 227 AIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRDTDD 286 Query: 267 ITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 I +EQ V++S ++++ + +++L+A+ P QD ++++ + + ++L LNK D+ Sbjct: 287 I---VEQIGVERSRKALKEADLVLLVLNASEPLTAQDRQLLE-ISQVTNRIIL-LNKTDL 341 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 43/118 (36%), Positives = 69/118 (58%), Gaps = 5/118 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+++ A+V + G TRD + INGV ++DTAGI D + Sbjct: 227 AIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRDTDD 286 Query: 66 CSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 I +Q+ +++ A+ EA L+L ++++ +T D + + N II+ NK D Sbjct: 287 --IVEQIGVERSRKALKEADLVLLVLNASEPLTAQDRQLLEISQVTN--RIILLNKTD 340 >gi|255018621|ref|ZP_05290747.1| GTP-binding protein EngA [Listeria monocytogenes FSL F2-515] Length = 156 Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 80/154 (51%), Gaps = 2/154 (1%) Query: 312 NTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQ-IGDIYINTISGRTGEGLDDLMVS 370 + G A+++ +NKWD ++ + ++ T+ I+ Q + I +S +T + L++L Sbjct: 4 DAGRAIIIVVNKWDAINKDEKTI-NVWTEDIREQFQFLSYAPIVFVSAKTKQRLNNLFPL 62 Query: 371 VLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFLIFCTFP 430 + +++ R+ +S LN + NP P + ++ Y TQ+ PP+F++F P Sbjct: 63 INQVSDNHSLRVQSSMLNDVISDAVAMNPSPMDKGKRLKIFYTTQVAVKPPTFVVFVNDP 122 Query: 431 NKIPESYKRYLINRLRINFSLSGIPIRMCFQSSK 464 + SY+R+L NR+R F G PIR+ + K Sbjct: 123 ELMHFSYERFLENRIREAFPFEGTPIRVIARKRK 156 >gi|332521867|ref|ZP_08398316.1| tRNA modification GTPase TrmE [Lacinutrix algicola 5H-3-7-4] gi|332042539|gb|EGI78741.1| tRNA modification GTPase TrmE [Lacinutrix algicola 5H-3-7-4] Length = 464 Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 42/123 (34%), Positives = 70/123 (56%), Gaps = 5/123 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N L+ ++ A+V + G TRD + + +I G+ F +DTAGI + K Sbjct: 226 VAIVGEPNVGKSTLLNALLNEERAIVSDIAGTTRDTIEDELVIEGIGFRFIDTAGIRETK 285 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKN----IPIIIVSNK 120 + + + E + +A +++ L ++ T I + KN P++I++NK Sbjct: 286 DVVESIGIKKTFE-KMEQAQVVILLFSAEEFQTESQRLILEIEKIKNRFPLKPLVIIANK 344 Query: 121 MDT 123 +DT Sbjct: 345 IDT 347 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 44/162 (27%), Positives = 85/162 (52%), Gaps = 10/162 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VG PNVGKSTL+N LL R + +G TRD++ + DTAG+R+ Sbjct: 226 VAIVGEPNVGKSTLLNALLNEERAIVSDIAGTTRDTIEDELVIEGIGFRFIDTAGIRETK 285 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + ES+ +KK+ + + + I+L A F+ + R++ + + L Sbjct: 286 DVVESI---GIKKTFEKMEQAQVVILLFSAE-EFQTESQRLILEIEKIKNR--FPLKPLV 339 Query: 326 MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDL 367 ++++K++ L T+ +K +I +I++ +S ++G G++ L Sbjct: 340 IIANKIDTLNASETEELK--SKIDNIHL--LSAKSGIGVEAL 377 >gi|319936667|ref|ZP_08011080.1| tRNA modification GTPase mnmE [Coprobacillus sp. 29_1] gi|319808224|gb|EFW04789.1| tRNA modification GTPase mnmE [Coprobacillus sp. 29_1] Length = 444 Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 44/119 (36%), Positives = 69/119 (57%), Gaps = 3/119 (2%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 I+G PNVGKS+L N L+ + A+V + G TRD + G ++ +I N++DTAGI + + Sbjct: 222 IIGKPNVGKSSLLNALLNEDKAIVTDIAGTTRDIVEGTIRLDNIILNMIDTAGIRETNDI 281 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 +N EL I++A L+L ++DS + +T D+ + + N IIV NK D I Sbjct: 282 VENIGVNKSKEL-IHKADLVLLVLDSSSELTKEDYELIELSQDTN--RIIVMNKKDQGI 337 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 52/200 (26%), Positives = 98/200 (49%), Gaps = 25/200 (12%) Query: 192 EGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNH 251 E +V + + ++G+PNVGKS+L+N LL ++ + +G TRD V + N Sbjct: 206 ESSQNVHLLKDGISTVIIGKPNVGKSSLLNALLNEDKAIVTDIAGTTRDIVEGTIRLDNI 265 Query: 252 PIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVF 311 + + DTAG+R+ + I E++ V KS + + + +++LD++ K+D +++ Sbjct: 266 ILNMIDTAGIRETNDIVENI---GVNKSKELIHKADLVLLVLDSSSELTKEDYELIELSQ 322 Query: 312 NTGHAVVLALNKWD----------MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTG 361 +T +V +NK D +S K N ++ L IK + ++G I Sbjct: 323 DTNRIIV--MNKKDQGIKYELDGIFISAKDNEIESL-INEIKKMFELGKIT--------- 370 Query: 362 EGLDDLMVSVLEINKLWKTR 381 G +D++ + +I L K R Sbjct: 371 AGQEDILANARQIQLLEKAR 390 >gi|71280742|ref|YP_270776.1| GTP-binding protein Era [Colwellia psychrerythraea 34H] gi|71146482|gb|AAZ26955.1| GTP-binding protein Era [Colwellia psychrerythraea 34H] Length = 305 Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 50/148 (33%), Positives = 78/148 (52%), Gaps = 8/148 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N L+ +K+++ P TR R+ G +VDT G+ + Sbjct: 13 IAIVGRPNVGKSTLLNALLGQKISITSKKPQTTRHRILGILTEENRQAVLVDTPGLHTEE 72 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN +I E LI+FL++ T D + S +++ P I+V NK D Sbjct: 73 KRAINRLMNRAASSSIAEVELIMFLVEG-THWTKDDELVLSKVKQSGTPCILVVNKTDN- 130 Query: 125 IAQRN-----FYEIYSL-DFKEIVEISA 146 I ++ ++ ++ DF++IV I A Sbjct: 131 IPDKDELLPHLQKLGAMHDFRDIVPICA 158 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 67/133 (50%), Gaps = 3/133 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA+VGRPNVGKSTL+N LLG +T + TR + +N + DT G+ Sbjct: 13 IAIVGRPNVGKSTLLNALLGQKISITSKKPQTTRHRILGILTEENRQAVLVDTPGLHTEE 72 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + ++ + + + S+ E + L++ T + K D ++ V +G +L +NK D Sbjct: 73 K--RAINRLMNRAASSSIAEVELIMFLVEGT-HWTKDDELVLSKVKQSGTPCILVVNKTD 129 Query: 326 MVSDKLNLLQDLR 338 + DK LL L+ Sbjct: 130 NIPDKDELLPHLQ 142 >gi|256420475|ref|YP_003121128.1| tRNA modification GTPase TrmE [Chitinophaga pinensis DSM 2588] gi|256035383|gb|ACU58927.1| tRNA modification GTPase TrmE [Chitinophaga pinensis DSM 2588] Length = 461 Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 42/127 (33%), Positives = 66/127 (51%), Gaps = 3/127 (2%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 I + A+VG+PN GKSTL+N LL NR + +G TRD++ N + + DTA Sbjct: 221 IKNGVNTAIVGKPNAGKSTLLNTLLNENRAIVSDIAGTTRDTIEEVLNIQGVLFRLIDTA 280 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R+ + + ES+ V+K+M+ +R + L D + VD+ N G +L Sbjct: 281 GIRESADVIESI---GVQKTMEKIREAGVVLYLFDVNETSLSELQAQVDTFVNEGINYLL 337 Query: 320 ALNKWDM 326 NK D+ Sbjct: 338 IGNKTDI 344 Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 43/120 (35%), Positives = 68/120 (56%), Gaps = 7/120 (5%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AIVG PN GKSTL N L+ + A+V + G TRD + I GV+F ++DTAGI + + Sbjct: 228 AIVGKPNAGKSTLLNTLLNENRAIVSDIAGTTRDTIEEVLNIQGVLFRLIDTAGIRESAD 287 Query: 66 C--SIAKQMNDQTELAINEAHLILFLID-SKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 SI Q +T I EA ++L+L D ++ ++ + +F+ + I +++ NK D Sbjct: 288 VIESIGVQ---KTMEKIREAGVVLYLFDVNETSLSELQAQVDTFV-NEGINYLLIGNKTD 343 >gi|239618515|ref|YP_002941837.1| tRNA modification GTPase TrmE [Kosmotoga olearia TBF 19.5.1] gi|239507346|gb|ACR80833.1| tRNA modification GTPase TrmE [Kosmotoga olearia TBF 19.5.1] Length = 440 Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 45/118 (38%), Positives = 68/118 (57%), Gaps = 5/118 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 I G NVGKSTL N L+++ A+V + PG TRD + ING+ F +VDTAGI + + Sbjct: 216 VIAGRTNVGKSTLLNALLRRDRAIVTDIPGTTRDTIEEDISINGIYFRLVDTAGIRESSD 275 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPY-DHAITSFLRKKNIPIIIVSNKMD 122 + + +++ I EA L+LF++D I P D + LRK+ I++ NK+D Sbjct: 276 -KVERIGIERSLKQIKEADLVLFMVDL---IEPENDLELYEKLRKEFRHSILIGNKLD 329 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 82/167 (49%), Gaps = 20/167 (11%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 ++ + GR NVGKSTL+N LL +R + G TRD++ + + DTAG+R+ Sbjct: 213 VKTVIAGRTNVGKSTLLNALLRRDRAIVTDIPGTTRDTIEEDISINGIYFRLVDTAGIRE 272 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 S + +E+ +++S++ ++ + + ++D P + DL + + + +L NK Sbjct: 273 SS---DKVERIGIERSLKQIKEADLVLFMVDLIEP--ENDLELYEKLRKEFRHSILIGNK 327 Query: 324 WDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVS 370 DMV + P D+ I+ +GR + L++LMV Sbjct: 328 LDMV---------------EKCPDGFDVCISAKTGRGIDKLENLMVE 359 >gi|121535380|ref|ZP_01667192.1| small GTP-binding protein [Thermosinus carboxydivorans Nor1] gi|121306072|gb|EAX47002.1| small GTP-binding protein [Thermosinus carboxydivorans Nor1] Length = 408 Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 55/174 (31%), Positives = 88/174 (50%), Gaps = 12/174 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLY-GQAIINGVIFNIVDTAGIADG 63 IAI G N GKS+L N L + +A+V + PG T D +Y I+ I+DTAGI D Sbjct: 12 IAIFGRRNAGKSSLINALTNQNIALVSDVPGTTTDPVYKAMEILPIGPVVIIDTAGIDD- 70 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + ++T +N+ L +ID AG++ ++ + + L+K+ IP+I V NK+DT Sbjct: 71 -EGELGALRVERTLQVLNKTDQALVVIDQAAGVSEWEERLVAELKKRQIPVIGVVNKIDT 129 Query: 124 RIAQRNFYEIYSLDFKE-----IVEISAEHDLGTSELHSVIFKIFKQKYPNHPL 172 Q E +LD+ + +V +SA+ G EL + K + P+ Sbjct: 130 --GQPAAAE--TLDWAKRLAIPMVAVSAKTRQGVEELKRQMIKHAPDNWEGPPI 179 Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 56/123 (45%), Gaps = 5/123 (4%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWN-WKNHPIEIFDTAGMR 262 + IA+ GR N GKS+LIN L N L G T D V + P+ I DTAG+ Sbjct: 10 MHIAIFGRRNAGKSSLINALTNQNIALVSDVPGTTTDPVYKAMEILPIGPVVIIDTAGID 69 Query: 263 KPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALN 322 L V++++Q + + +V++D + + R+V + V+ +N Sbjct: 70 DEG----ELGALRVERTLQVLNKTDQALVVIDQAAGVSEWEERLVAELKKRQIPVIGVVN 125 Query: 323 KWD 325 K D Sbjct: 126 KID 128 >gi|289551831|ref|YP_003472735.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Staphylococcus lugdunensis HKU09-01] gi|289181362|gb|ADC88607.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Staphylococcus lugdunensis HKU09-01] Length = 459 Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 53/158 (33%), Positives = 84/158 (53%), Gaps = 5/158 (3%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PNVGKS++ N L++ A+V G TRD L + GV +VDTAGI D ++ Sbjct: 226 IVGKPNVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRDTEDI 285 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 + K +++ A+++A LILF+++ +T D T F +N +I++ NK D + Sbjct: 286 -VEKIGVERSRKALSQADLILFVLNYNEPLTKEDR--TLFEVIENEDVIVIVNKTDL-VQ 341 Query: 127 QRNFYEIYSL-DFKEIVEISAEHDLGTSELHSVIFKIF 163 Q N E+ + K +++ S G EL I +F Sbjct: 342 QLNIEEVQEMIGNKPLIQTSMLKQEGIDELEIQIRDLF 379 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 47/177 (26%), Positives = 93/177 (52%), Gaps = 14/177 (7%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L +VG+PNVGKS+++N L+ N+ + +G TRD + N + P+ + D Sbjct: 216 KIMREGLSTVIVGKPNVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVD 275 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R I E + V++S +++ + + +L+ P K+D + + + N V Sbjct: 276 TAGIRDTEDIVEKI---GVERSRKALSQADLILFVLNYNEPLTKEDRTLFEVIEN--EDV 330 Query: 318 VLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEI 374 ++ +NK D+V Q L + ++ + IG+ + S EG+D+L + + ++ Sbjct: 331 IVIVNKTDLV-------QQLNIEEVQEM--IGNKPLIQTSMLKQEGIDELEIQIRDL 378 >gi|257452996|ref|ZP_05618295.1| tRNA modification GTPase TrmE [Fusobacterium sp. 3_1_5R] gi|257466623|ref|ZP_05630934.1| tRNA modification GTPase TrmE [Fusobacterium gonidiaformans ATCC 25563] gi|315917778|ref|ZP_07914018.1| thiophene and furan oxidation protein THDF [Fusobacterium gonidiaformans ATCC 25563] gi|317059536|ref|ZP_07924021.1| thiophene and furan oxidation protein THDF [Fusobacterium sp. 3_1_5R] gi|313685212|gb|EFS22047.1| thiophene and furan oxidation protein THDF [Fusobacterium sp. 3_1_5R] gi|313691653|gb|EFS28488.1| thiophene and furan oxidation protein THDF [Fusobacterium gonidiaformans ATCC 25563] Length = 457 Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 171 PLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLL 230 P +++N ++ KE I+S K K I + ++ ++G+PNVGKS+L+N +L R + Sbjct: 190 PENLLKNLRQVSVEIKELISSYQKG--KMIKEGVKTVIIGKPNVGKSSLLNSILREERAI 247 Query: 231 TGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTI 290 +G TRD + N K P+ + DTAG+R + + E++ V KS + ++ + + Sbjct: 248 VTQVAGTTRDIIEEVINIKGIPLVLVDTAGIRNTTDLVENI---GVMKSKEFLQKADLVL 304 Query: 291 VLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 +LDA+ K+D I S V+ LNK D+ Sbjct: 305 FVLDASQELSKEDEEIYAS-LQENQKVIGILNKTDL 339 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 51/166 (30%), Positives = 87/166 (52%), Gaps = 15/166 (9%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG-- 63 I+G PNVGKS+L N +++++ A+V G TRD + I G+ +VDTAGI + Sbjct: 224 VIIGKPNVGKSSLLNSILREERAIVTQVAGTTRDIIEEVINIKGIPLVLVDTAGIRNTTD 283 Query: 64 --KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 +N + K ++ + +A L+LF++D+ ++ D I + L+ +N +I + NK Sbjct: 284 LVENIGVMK-----SKEFLQKADLVLFVLDASQELSKEDEEIYASLQ-ENQKVIGILNKT 337 Query: 122 DTRIAQRNFYEIYSLD-FKEIVEISAEHDLGTSELHSVIFKIFKQK 166 D +I SL K +EISA +G E+ I++ Q+ Sbjct: 338 DL----EKKIQISSLSKIKNWIEISAMKYIGIEEMEEKIYQYILQE 379 >gi|124024442|ref|YP_001018749.1| tRNA modification GTPase TrmE [Prochlorococcus marinus str. MIT 9303] gi|166234806|sp|A2CDC4|MNME_PROM3 RecName: Full=tRNA modification GTPase mnmE gi|123964728|gb|ABM79484.1| putative thiophen / furan oxidation protein [Prochlorococcus marinus str. MIT 9303] Length = 465 Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 53/159 (33%), Positives = 86/159 (54%), Gaps = 5/159 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKS+L NRL +++ A+V + PG TRD L + ++ GV +VDTAGI K Sbjct: 230 VALVGRPNVGKSSLLNRLSRRERAIVTDLPGTTRDVLESEIVLEGVPITLVDTAGIRATK 289 Query: 65 NCSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + +Q+ D++ A+ A + + + D G T D A+ + + ++P ++V NK D Sbjct: 290 DA--LEQLGIDRSHQALAAADVAVLVFDLSLGWTADDAALLAQI-PDDLPRLLVGNKADL 346 Query: 124 RIAQRNFYEIYSLDFKEI-VEISAEHDLGTSELHSVIFK 161 + A +D K + V +SA G L + K Sbjct: 347 QPASMTASLSNEVDGKTVDVMLSALTGQGEEALIEAVLK 385 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 32/82 (39%), Positives = 48/82 (58%), Gaps = 3/82 (3%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + L++A+VGRPNVGKS+L+NRL R + G TRD + + PI + DTA Sbjct: 224 LRQGLQVALVGRPNVGKSSLLNRLSRRERAIVTDLPGTTRDVLESEIVLEGVPITLVDTA 283 Query: 260 GMRKPSRITESLEQKTVKKSMQ 281 G+R ++LEQ + +S Q Sbjct: 284 GIRA---TKDALEQLGIDRSHQ 302 >gi|15803092|ref|NP_289123.1| GTP-binding protein Era [Escherichia coli O157:H7 EDL933] gi|12516983|gb|AAG57681.1|AE005487_5 GTP-binding protein [Escherichia coli O157:H7 str. EDL933] Length = 301 Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 49/178 (27%), Positives = 88/178 (49%), Gaps = 6/178 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N+L+ +K+++ R+ G VDT G+ + Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTXXHRIVGIHTEGAYQAIYVDTPGLHMEE 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN +I + L++F+++ TP D + + LR+ P+I+ NK+D Sbjct: 71 KRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNV 129 Query: 125 IAQRNF-----YEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 + + + ++F +IV ISAE L + + +++ K + + P + I + Sbjct: 130 QEKADLLPHLQFLASQMNFLDIVPISAETGLNVATIAAIVRKHLPEATHHFPEDYITD 187 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 48/157 (30%), Positives = 77/157 (49%), Gaps = 9/157 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS-VSISWNWKNHPIEIFDTAGMRKP 264 IA+VGRPNVGKSTL+N+LLG +T ++ V I I + DT G+ Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTXXHRIVGIHTEGAYQAIYV-DTPGLHME 69 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 + ++ + K + S+ E I +++ T + D +++ + V+LA+NK Sbjct: 70 EK--RAINRLMNKAASSSIGDVELVIFVVEGT-RWTPDDEMVLNKLREGKAPVILAVNKV 126 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTG 361 D V +K +LL L+ A Q+ + I IS TG Sbjct: 127 DNVQEKADLLPHLQFLA----SQMNFLDIVPISAETG 159 >gi|312879308|ref|ZP_07739108.1| tRNA modification GTPase TrmE [Aminomonas paucivorans DSM 12260] gi|310782599|gb|EFQ22997.1| tRNA modification GTPase TrmE [Aminomonas paucivorans DSM 12260] Length = 472 Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 51/174 (29%), Positives = 89/174 (51%), Gaps = 13/174 (7%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + +R+ +VGRPNVGKS+L+N LL R + G TRD V + P+ + DTA Sbjct: 234 LREGIRVGLVGRPNVGKSSLLNALLQEARAIVTPLPGTTRDLVEAVTTHRGVPLRLVDTA 293 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R + + LE ++++ +++ + + ++DA P ++D + S+ G +++ Sbjct: 294 GIRSSA---DPLEALGIQRARRTLEEADLRVWVVDAGEPLTEEDRELAASL--RGKTLLV 348 Query: 320 ALNKWDMVSDKLNLLQDLRTKAIKNL-PQIGDIYINTISGRTGEGLDDLMVSVL 372 A NK D L + + A+K L P ++ + G E L D MV VL Sbjct: 349 ARNKTD-------LPEAVSEAALKALVPGCAVCSVSALEGVGLEALKDRMVEVL 395 Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 40/120 (33%), Positives = 65/120 (54%), Gaps = 7/120 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + +VG PNVGKS+L N L+++ A+V PG TRD + GV +VDTAGI Sbjct: 240 VGLVGRPNVGKSSLLNALLQEARAIVTPLPGTTRDLVEAVTTHRGVPLRLVDTAGIRSSA 299 Query: 65 NC--SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + ++ Q +T + EA L ++++D+ +T D + + LR K +++ NK D Sbjct: 300 DPLEALGIQRARRT---LEEADLRVWVVDAGEPLTEEDRELAASLRGKT--LLVARNKTD 354 >gi|261492469|ref|ZP_05989023.1| GTP-binding protein Era [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496944|ref|ZP_05993312.1| GTP-binding protein Era [Mannheimia haemolytica serotype A2 str. OVINE] gi|261307468|gb|EEY08803.1| GTP-binding protein Era [Mannheimia haemolytica serotype A2 str. OVINE] gi|261311832|gb|EEY12981.1| GTP-binding protein Era [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 305 Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 52/183 (28%), Positives = 87/183 (47%), Gaps = 20/183 (10%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N+++++K+++ TR R+ G + VDT G+ + Sbjct: 16 IAIVGRPNVGKSTLLNKILEQKISITSRKAQTTRHRIVGIHTEDQYQAIYVDTPGLHIEE 75 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD-- 122 +I + MN AI + LI+F+++ T D + + LR P+++ NK+D Sbjct: 76 KRAINRLMNRAASSAIGDVDLIIFVVEG-TKWTEDDEMVLNKLRSAKAPVLLAINKIDNI 134 Query: 123 ----------TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPL 172 T ++Q+ DF EI+ ISA+ L + + +Q + P Sbjct: 135 KEKEELLPHITELSQK-------FDFAEILPISAQRGKNVHILQKFVRQSLRQGEHHFPE 187 Query: 173 EMI 175 E + Sbjct: 188 EYV 190 Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 65/130 (50%), Gaps = 5/130 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMR-KP 264 IA+VGRPNVGKSTL+N++L +T ++ TR + + DT G+ + Sbjct: 16 IAIVGRPNVGKSTLLNKILEQKISITSRKAQTTRHRIVGIHTEDQYQAIYVDTPGLHIEE 75 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 R L + ++ V + I +++ T + + D +++ + + V+LA+NK Sbjct: 76 KRAINRLMNRAASSAIGDV---DLIIFVVEGT-KWTEDDEMVLNKLRSAKAPVLLAINKI 131 Query: 325 DMVSDKLNLL 334 D + +K LL Sbjct: 132 DNIKEKEELL 141 >gi|302875565|ref|YP_003844198.1| small GTP-binding protein [Clostridium cellulovorans 743B] gi|307690094|ref|ZP_07632540.1| small GTP-binding protein [Clostridium cellulovorans 743B] gi|302578422|gb|ADL52434.1| small GTP-binding protein [Clostridium cellulovorans 743B] Length = 411 Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 52/170 (30%), Positives = 91/170 (53%), Gaps = 4/170 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGV-IFNIVDTAGIADG 63 IA+ G N GKS++ N + +++++V + G T D +Y I + I+DTAG+ D Sbjct: 14 IALFGKRNAGKSSVINAITNQQLSIVSDIEGTTTDPVYKSIEILPIGPCVIIDTAGLDDV 73 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 ++ ++T +N+ + L + DS GIT YD I + ++KK IP++I+ NK+D Sbjct: 74 GELGDLRR--NKTLEVLNKTDIALIVADSTKGITGYDKEIIAEVKKKKIPLMILMNKIDE 131 Query: 124 RIAQRNFYEIYSLDFK-EIVEISAEHDLGTSELHSVIFKIFKQKYPNHPL 172 R + N E +F E++++SA +G +E+ I + Q N L Sbjct: 132 RNFEVNEIENLKKEFDCEVLKVSAVTKVGINEVKEKISFLIPQDKENFRL 181 Score = 37.7 bits (86), Expect = 4.1, Method: Compositional matrix adjust. Identities = 33/139 (23%), Positives = 64/139 (46%), Gaps = 5/139 (3%) Query: 201 SKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWN-WKNHPIEIFDTA 259 S+ + IA+ G+ N GKS++IN + + G T D V S P I DTA Sbjct: 9 SERVHIALFGKRNAGKSSVINAITNQQLSIVSDIEGTTTDPVYKSIEILPIGPCVIIDTA 68 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+ + + KT ++ + + +++ D+T D I+ V +++ Sbjct: 69 GLDDVGELGDLRRNKT----LEVLNKTDIALIVADSTKGITGYDKEIIAEVKKKKIPLMI 124 Query: 320 ALNKWDMVSDKLNLLQDLR 338 +NK D + ++N +++L+ Sbjct: 125 LMNKIDERNFEVNEIENLK 143 >gi|196248955|ref|ZP_03147655.1| GTP-binding protein Era [Geobacillus sp. G11MC16] gi|196211831|gb|EDY06590.1| GTP-binding protein Era [Geobacillus sp. G11MC16] Length = 302 Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 53/172 (30%), Positives = 88/172 (51%), Gaps = 11/172 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKST NR++ +K+A++ + P TR+++ G + +DT G+ K Sbjct: 11 VAIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKIQGVYTDDEAQIIFIDTPGVHKPK 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + M A+ E LILF+++++ G + I L + N P+ +V NK+D R Sbjct: 71 H-KLGDFMMKVALNALREVDLILFMVNAEEGFGRGEAFIIERLNEVNTPVFLVINKID-R 128 Query: 125 IAQRNFYEIYS-----LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHP 171 + I F EIV ISA L + + ++ +I KQ+ P P Sbjct: 129 VHPDELLPIIDRYKDLYPFAEIVPISA---LEGNNVERLLEQI-KQRLPEGP 176 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKST +NR++G + + TR+ + + I DT G+ KP Sbjct: 11 VAIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKIQGVYTDDEAQIIFIDTPGVHKPK 70 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L +K ++ ++R + + +++A F + + I++ + V L +NK D Sbjct: 71 ---HKLGDFMMKVALNALREVDLILFMVNAEEGFGRGEAFIIERLNEVNTPVFLVINKID 127 Query: 326 MV 327 V Sbjct: 128 RV 129 >gi|7994696|sp|O51830|MNME_BUCMP RecName: Full=tRNA modification GTPase mnmE gi|2754806|gb|AAC04235.1| ThdF [Buchnera aphidicola (Myzus persicae)] Length = 453 Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 58/165 (35%), Positives = 78/165 (47%), Gaps = 7/165 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 I I G PN GKS+L N L A+V PG TRD LY ING+ ++DTAG+ D K Sbjct: 219 IVIAGPPNAGKSSLLNALSHSNRAIVTKIPGTTRDLLYENISINGISCQLIDTAGLRDTK 278 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRK---KNIPIIIVSNKM 121 N I + + I +A +LF+ID + F++ NI I + NK Sbjct: 279 N-EIERIGIFRAWEVIKKADHVLFVIDKTTKQSEQKKICNEFIQNISVNNIQITFILNKN 337 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQK 166 D + N +I SL F + ISA G +L I KI K + Sbjct: 338 DLVQDKFNTEKIESLLF---INISARTGQGIDKLRKHIVKIAKNE 379 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 48/175 (27%), Positives = 87/175 (49%), Gaps = 18/175 (10%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP 264 +I + G PN GKS+L+N L NR + G TRD + + + ++ DTAG+R Sbjct: 218 KIVIAGPPNAGKSSLLNALSHSNRAIVTKIPGTTRDLLYENISINGISCQLIDTAGLRDT 277 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL---RIVDSVFNTGHAVVLAL 321 +E+ + ++ + ++ + + ++D T +Q + ++ + L Sbjct: 278 KN---EIERIGIFRAWEVIKKADHVLFVIDKTTKQSEQKKICNEFIQNISVNNIQITFIL 334 Query: 322 NKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 NK D+V DK N T+ I++L ++IN IS RTG+G+D L +++I K Sbjct: 335 NKNDLVQDKFN------TEKIESL-----LFIN-ISARTGQGIDKLRKHIVKIAK 377 >gi|34581226|ref|ZP_00142706.1| possible thiophene and furan oxidation protein thdF [Rickettsia sibirica 246] gi|229587120|ref|YP_002845621.1| tRNA modification GTPase TrmE [Rickettsia africae ESF-5] gi|28262611|gb|EAA26115.1| possible thiophene and furan oxidation protein thdF [Rickettsia sibirica 246] gi|228022170|gb|ACP53878.1| tRNA modification GTPase TrmE [Rickettsia africae ESF-5] Length = 445 Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 40/125 (32%), Positives = 75/125 (60%), Gaps = 7/125 (5%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 L++A++G PNVGKS+L+N L+ + + + +G TRD + + +PI + DTAG+R+ Sbjct: 216 LKLAIIGPPNVGKSSLLNFLMQRDIAIVSNIAGTTRDIIEGHLDIGGYPIILQDTAGIRE 275 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFN-TGHAVVLALN 322 S ++ +EQ+ +K+++ S +T + I++ DA EK D I + + N + +N Sbjct: 276 ES--SDIIEQEGIKRAINSAKTADIKIIMFDA----EKLDSSINEDIINLIDENTITIIN 329 Query: 323 KWDMV 327 K D++ Sbjct: 330 KIDLI 334 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 43/129 (33%), Positives = 71/129 (55%), Gaps = 9/129 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKS+L N L+++ +A+V N G TRD + G I G + DTAGI + + Sbjct: 218 LAIIGPPNVGKSSLLNFLMQRDIAIVSNIAGTTRDIIEGHLDIGGYPIILQDTAGIRE-E 276 Query: 65 NCSIAKQMNDQTELAINE---AHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 + I +Q + + AIN A + + + D++ + + I + + + I II NK+ Sbjct: 277 SSDIIEQ--EGIKRAINSAKTADIKIIMFDAEKLDSSINEDIINLIDENTITII---NKI 331 Query: 122 DTRIAQRNF 130 D A + F Sbjct: 332 DLIEASKIF 340 >gi|257866268|ref|ZP_05645921.1| tRNA modification GTPase mnmE [Enterococcus casseliflavus EC30] gi|257873216|ref|ZP_05652869.1| tRNA modification GTPase mnmE [Enterococcus casseliflavus EC10] gi|257800226|gb|EEV29254.1| tRNA modification GTPase mnmE [Enterococcus casseliflavus EC30] gi|257807380|gb|EEV36202.1| tRNA modification GTPase mnmE [Enterococcus casseliflavus EC10] Length = 481 Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 52/178 (29%), Positives = 94/178 (52%), Gaps = 16/178 (8%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L A++GRPNVGKS+L+N LL + + +G TRD + N + P+++ D Sbjct: 238 KILREGLSTAIIGRPNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLID 297 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ I E + V++S +++ E +++L+ + ++D ++++ G Sbjct: 298 TAGIRETEDIVEKI---GVERSRKALAEAELILLVLNQSEGLTQEDKQLLE--LTAGSRR 352 Query: 318 VLALNKWDMVSDKLNLLQDLRTKAIKNLPQ-IGDIYINTISGRTGEGLDDLMVSVLEI 374 ++ LNK D+ KL A L Q D I ++S T EGLD L ++ ++ Sbjct: 353 IILLNKTDL-EPKL---------ATAELAQYAADEPIFSVSVLTSEGLDQLEQAIADL 400 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 45/158 (28%), Positives = 82/158 (51%), Gaps = 3/158 (1%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L++++ A+V + G TRD + + GV ++DTAGI + ++ Sbjct: 247 AIIGRPNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETED 306 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 + K +++ A+ EA LIL +++ G+T D + I++ ++ ++ Sbjct: 307 I-VEKIGVERSRKALAEAELILLVLNQSEGLTQEDKQLLELTAGSRRIILLNKTDLEPKL 365 Query: 126 AQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 A + Y+ D + I +S G +L I +F Sbjct: 366 ATAELAQ-YAAD-EPIFSVSVLTSEGLDQLEQAIADLF 401 >gi|323694902|ref|ZP_08109052.1| tRNA modification GTPase TrmE [Clostridium symbiosum WAL-14673] gi|323500992|gb|EGB16904.1| tRNA modification GTPase TrmE [Clostridium symbiosum WAL-14673] Length = 462 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 54/185 (29%), Positives = 95/185 (51%), Gaps = 4/185 (2%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 I+G PN GKS+L N LV ++ A+V + G TRD L ++G+ NIVDTAGI + ++ Sbjct: 230 ILGKPNAGKSSLMNVLVGEERAIVTDIAGTTRDTLEENIRLHGISLNIVDTAGIRETEDV 289 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 + K D+ ++A L+++++D + D+ I + + + I++ NK D + Sbjct: 290 -VEKIGVDKARANADDADLLIYVVDGSCPLDENDYQIMNLIEGR--KSIVLLNKTDLEMV 346 Query: 127 QRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEESPK 186 EI KE+V +SA+ G L I ++F + E++ N R++ + Sbjct: 347 -LTPEEIKEKTGKEVVAVSAKEQRGIDLLEEKIKELFLSGEIDFNDEVMITNVRHKTAMS 405 Query: 187 ENITS 191 E + S Sbjct: 406 EALKS 410 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 60/239 (25%), Positives = 108/239 (45%), Gaps = 44/239 (18%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 +S+ +R ++G+PN GKS+L+N L+G R + +G TRD++ + + I DTA Sbjct: 222 LSEGIRTVILGKPNAGKSSLMNVLVGEERAIVTDIAGTTRDTLEENIRLHGISLNIVDTA 281 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R+ + E + V K+ + + I ++D + P ++ D +I++ + G ++ Sbjct: 282 GIRETEDVVEKI---GVDKARANADDADLLIYVVDGSCPLDENDYQIMNLI--EGRKSIV 336 Query: 320 ALNKWDM-------------------VSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 LNK D+ VS K DL + IK L G+I N Sbjct: 337 LLNKTDLEMVLTPEEIKEKTGKEVVAVSAKEQRGIDLLEEKIKELFLSGEIDFN------ 390 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIF------NRYNRLKYI 413 D++M++ N KT ++ + + L K +++ P F N Y +L I Sbjct: 391 ----DEVMIT----NVRHKTAMSEALKSLSLVKQSIEDQMPEDFYSIDLMNAYEQLGTI 441 >gi|313892276|ref|ZP_07825869.1| tRNA modification GTPase TrmE [Dialister microaerophilus UPII 345-E] gi|313119414|gb|EFR42613.1| tRNA modification GTPase TrmE [Dialister microaerophilus UPII 345-E] Length = 459 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 40/127 (31%), Positives = 75/127 (59%), Gaps = 5/127 (3%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 I +R A+VG+PN GKS+L+N LL R + G TRD++ S + P+ + DTA Sbjct: 218 IKDGIRTAIVGKPNAGKSSLLNTLLQEERAIVTDIPGTTRDTIEESISLSGIPLILMDTA 277 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+RK +E+ ++++ +S+ + ++++D++ E+ D ++++ + + AVVL Sbjct: 278 GIRKTEN---KVEKIGIERARESMEKADLVLMVIDSSKELEESDKKLLEEI-SKRKAVVL 333 Query: 320 ALNKWDM 326 LNK D+ Sbjct: 334 -LNKSDL 339 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 44/154 (28%), Positives = 87/154 (56%), Gaps = 3/154 (1%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AIVG PN GKS+L N L++++ A+V + PG TRD + ++G+ ++DTAGI +N Sbjct: 225 AIVGKPNAGKSSLLNTLLQEERAIVTDIPGTTRDTIEESISLSGIPLILMDTAGIRKTEN 284 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 + K ++ ++ +A L+L +IDS + D + + K+ +++ + ++ + Sbjct: 285 -KVEKIGIERARESMEKADLVLMVIDSSKELEESDKKLLEEISKRKAVVLLNKSDLEKKT 343 Query: 126 AQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVI 159 + + Y+ D ++EISA++ G ++L V+ Sbjct: 344 TKETVSK-YAKDLP-VLEISAKNKTGMNKLEKVL 375 >gi|39939111|ref|NP_950877.1| GTP-binding protein Era [Onion yellows phytoplasma OY-M] gi|39722220|dbj|BAD04710.1| glycyl-tRNA synthetase [Onion yellows phytoplasma OY-M] Length = 295 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 54/181 (29%), Positives = 90/181 (49%), Gaps = 8/181 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAI+G PNVGKSTL N L ++K+A+ P TR ++ G + VDT GI K Sbjct: 12 IAILGRPNVGKSTLLNALTQQKVAITSAKPQTTRHKIIGICHEPNAQYIFVDTPGINQYK 71 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD-- 122 + + ++MN+ +I + LILFL DS P + + + + P+ +V NK+D Sbjct: 72 HL-LNQKMNNIAFQSIKDVDLILFLTDS--FYHPKEETLLKMIFQTKKPVFLVINKIDRL 128 Query: 123 ---TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNK 179 ++I + F+ ++ +SA T+ L I++ K +P +MI + K Sbjct: 129 KNKSQIDAIILSYLNHFSFQTVIPLSAIKAKNTTFLKENIYQNIKPGVAYYPQDMITDQK 188 Query: 180 R 180 + Sbjct: 189 K 189 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 62/125 (49%), Gaps = 5/125 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++GRPNVGKSTL+N L +T ++ TR + + N DT G+ + Sbjct: 12 IAILGRPNVGKSTLLNALTQQKVAITSAKPQTTRHKIIGICHEPNAQYIFVDTPGINQYK 71 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + L QK + QS++ + + L D+ + ++ ++ +F T V L +NK D Sbjct: 72 HL---LNQKMNNIAFQSIKDVDLILFLTDSF--YHPKEETLLKMIFQTKKPVFLVINKID 126 Query: 326 MVSDK 330 + +K Sbjct: 127 RLKNK 131 >gi|323486760|ref|ZP_08092079.1| hypothetical protein HMPREF9474_03830 [Clostridium symbiosum WAL-14163] gi|323399899|gb|EGA92278.1| hypothetical protein HMPREF9474_03830 [Clostridium symbiosum WAL-14163] Length = 462 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 54/185 (29%), Positives = 95/185 (51%), Gaps = 4/185 (2%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 I+G PN GKS+L N LV ++ A+V + G TRD L ++G+ NIVDTAGI + ++ Sbjct: 230 ILGKPNAGKSSLMNVLVGEERAIVTDIAGTTRDTLEENIRLHGISLNIVDTAGIRETEDV 289 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 + K D+ ++A L+++++D + D+ I + + + I++ NK D + Sbjct: 290 -VEKIGVDKARANADDADLLIYVVDGSCPLDENDYQIMNLIEGR--KSIVLLNKTDLEMV 346 Query: 127 QRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEESPK 186 EI KE+V +SA+ G L I ++F + E++ N R++ + Sbjct: 347 -LTPEEIKEKTGKEVVAVSAKEQRGIDLLEEKIKELFLSGEIDFNDEVMITNVRHKTAMS 405 Query: 187 ENITS 191 E + S Sbjct: 406 EALKS 410 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 60/239 (25%), Positives = 108/239 (45%), Gaps = 44/239 (18%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 +S+ +R ++G+PN GKS+L+N L+G R + +G TRD++ + + I DTA Sbjct: 222 LSEGIRTVILGKPNAGKSSLMNVLVGEERAIVTDIAGTTRDTLEENIRLHGISLNIVDTA 281 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R+ + E + V K+ + + I ++D + P ++ D +I++ + G ++ Sbjct: 282 GIRETEDVVEKI---GVDKARANADDADLLIYVVDGSCPLDENDYQIMNLI--EGRKSIV 336 Query: 320 ALNKWDM-------------------VSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRT 360 LNK D+ VS K DL + IK L G+I N Sbjct: 337 LLNKTDLEMVLTPEEIKEKTGKEVVAVSAKEQRGIDLLEEKIKELFLSGEIDFN------ 390 Query: 361 GEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIF------NRYNRLKYI 413 D++M++ N KT ++ + + L K +++ P F N Y +L I Sbjct: 391 ----DEVMIT----NVRHKTAMSEALKSLSLVKQSIEDQMPEDFYSIDLMNAYEQLGTI 441 >gi|322385140|ref|ZP_08058787.1| thiophene and furan oxidation protein ThdF [Streptococcus cristatus ATCC 51100] gi|321270764|gb|EFX53677.1| thiophene and furan oxidation protein ThdF [Streptococcus cristatus ATCC 51100] Length = 520 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 45/137 (32%), Positives = 82/137 (59%), Gaps = 7/137 (5%) Query: 207 AVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSR 266 A++GRPNVGKS+L+N LL ++ + G TRD + N P+++ DTAG+R+ Sbjct: 290 AIIGRPNVGKSSLLNNLLREDKAIVTDIEGTTRDVIEEYVNINGVPLKLIDTAGIRETDD 349 Query: 267 ITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 + +EQ V++S ++++ + +++L+A+ P QD ++++ ++ V+ LNK D+ Sbjct: 350 L---VEQIGVERSKKALQEADLVLLVLNASEPLTDQDKQLLEISQDSNRIVL--LNKTDL 404 Query: 327 VSDKLNLLQDLRTKAIK 343 +K+ L Q L AIK Sbjct: 405 -EEKIELDQ-LPANAIK 419 Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 40/118 (33%), Positives = 70/118 (59%), Gaps = 5/118 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+++ A+V + G TRD + INGV ++DTAGI + + Sbjct: 290 AIIGRPNVGKSSLLNNLLREDKAIVTDIEGTTRDVIEEYVNINGVPLKLIDTAGIRETDD 349 Query: 66 CSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + +Q+ ++++ A+ EA L+L ++++ +T D + + N I++ NK D Sbjct: 350 --LVEQIGVERSKKALQEADLVLLVLNASEPLTDQDKQLLEISQDSN--RIVLLNKTD 403 >gi|271501620|ref|YP_003334646.1| GTP-binding protein Era [Dickeya dadantii Ech586] gi|270345175|gb|ACZ77940.1| GTP-binding protein Era [Dickeya dadantii Ech586] Length = 301 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 53/185 (28%), Positives = 91/185 (49%), Gaps = 20/185 (10%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYG-------QAIINGVIFNIVDT 57 +AIVG PNVGKSTL N+L+ +K+++ P TR R+ G QAI VDT Sbjct: 11 VAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGIHTEGPYQAI-------YVDT 63 Query: 58 AGIADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIV 117 G+ + +I + MN +I + LI+F+++ T D + + LR + P+++ Sbjct: 64 PGLHIEEKRAINRLMNRAASSSIGDVELIIFVVEG-THWTDDDEMVVNKLRDQKTPVLLA 122 Query: 118 SNKMD-----TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPL 172 NK+D T++ ++F ++V ISAE + +++ K Q + P Sbjct: 123 INKVDNVTDKTKLLPHIQMLSEKMNFLDVVPISAEKGTNVDTIAAIVRKHLPQAIHHFPE 182 Query: 173 EMIEN 177 + I + Sbjct: 183 DYITD 187 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 42/130 (32%), Positives = 65/130 (50%), Gaps = 5/130 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMR-KP 264 +A+VGRPNVGKSTL+N+LLG +T + TR + + DT G+ + Sbjct: 11 VAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGIHTEGPYQAIYVDTPGLHIEE 70 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 R L + S+ V E I +++ T + D +V+ + + V+LA+NK Sbjct: 71 KRAINRLMNRAASSSIGDV---ELIIFVVEGT-HWTDDDEMVVNKLRDQKTPVLLAINKV 126 Query: 325 DMVSDKLNLL 334 D V+DK LL Sbjct: 127 DNVTDKTKLL 136 >gi|206895221|ref|YP_002246509.1| small GTP-binding protein domain [Coprothermobacter proteolyticus DSM 5265] gi|206737838|gb|ACI16916.1| small GTP-binding protein domain [Coprothermobacter proteolyticus DSM 5265] Length = 424 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 67/248 (27%), Positives = 116/248 (46%), Gaps = 15/248 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGV-IFNIVDTAGIADG 63 IAIVG NVGKS+L N + + +A+V + PG T D +Y + + ++DT G+ D Sbjct: 18 IAIVGRRNVGKSSLINAIAGQDIALVSDVPGTTTDPVYKTLEVKPLGPVTLIDTPGLDD- 76 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + ++ ++ + A+ +A + ++D K G ++ I S LR +IP +I NK D Sbjct: 77 -EGLLGQKRVERAKRALYKADAAILVVDDKPGA--FEDFIVSLLRNLSIPFVIAVNKSDV 133 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPL--EMIENNKR- 180 + + Y +V+++A SEL V+ + + PL ++ NK Sbjct: 134 TEDTKTLVKDYEPFNVPVVKVAAAQGKNISELIQVLSSLLPDEE-EKPLVAHLLGQNKTA 192 Query: 181 ------NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQ 234 ++ +PK + ++++I IAVV RP K TL + ++T SQ Sbjct: 193 VLVIPVDKAAPKGRLIMPQVEAIRDIIDHGGIAVVTRPPELKETLEKLQYNVDLVVTDSQ 252 Query: 235 SGITRDSV 242 I D V Sbjct: 253 VIIDVDKV 260 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/133 (32%), Positives = 68/133 (51%), Gaps = 7/133 (5%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKN-HPIEIFDTAGMRK 263 IA+VGR NVGKS+LIN + G + L G T D V + K P+ + DT G+ Sbjct: 17 HIAIVGRRNVGKSSLINAIAGQDIALVSDVPGTTTDPVYKTLEVKPLGPVTLIDTPGLDD 76 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 L QK V+++ +++ + I+++D P +D IV + N V+A+NK Sbjct: 77 EGL----LGQKRVERAKRALYKADAAILVVDDK-PGAFEDF-IVSLLRNLSIPFVIAVNK 130 Query: 324 WDMVSDKLNLLQD 336 D+ D L++D Sbjct: 131 SDVTEDTKTLVKD 143 >gi|157829012|ref|YP_001495254.1| tRNA modification GTPase TrmE [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933734|ref|YP_001650523.1| tRNA modification GTPase TrmE [Rickettsia rickettsii str. Iowa] gi|166234817|sp|A8GTM1|MNME_RICRS RecName: Full=tRNA modification GTPase mnmE gi|189036206|sp|B0BV57|MNME_RICRO RecName: Full=tRNA modification GTPase mnmE gi|157801493|gb|ABV76746.1| tRNA modification GTPase TrmE [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908821|gb|ABY73117.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase [Rickettsia rickettsii str. Iowa] Length = 445 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 40/125 (32%), Positives = 75/125 (60%), Gaps = 7/125 (5%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 L++A++G PNVGKS+L+N L+ + + + +G TRD + + +PI + DTAG+R+ Sbjct: 216 LKLAIIGPPNVGKSSLLNFLMQRDIAIVSNIAGTTRDIIEGHLDIGGYPIILQDTAGIRE 275 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFN-TGHAVVLALN 322 S ++ +EQ+ +K+++ S +T + I++ DA EK D I + + N + +N Sbjct: 276 ES--SDIIEQEGIKRAINSAKTADIKIIMFDA----EKLDSSINEDIINLIDENTITIIN 329 Query: 323 KWDMV 327 K D++ Sbjct: 330 KIDLI 334 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 43/129 (33%), Positives = 71/129 (55%), Gaps = 9/129 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKS+L N L+++ +A+V N G TRD + G I G + DTAGI + + Sbjct: 218 LAIIGPPNVGKSSLLNFLMQRDIAIVSNIAGTTRDIIEGHLDIGGYPIILQDTAGIRE-E 276 Query: 65 NCSIAKQMNDQTELAINE---AHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 + I +Q + + AIN A + + + D++ + + I + + + I II NK+ Sbjct: 277 SSDIIEQ--EGIKRAINSAKTADIKIIMFDAEKLDSSINEDIINLIDENTITII---NKI 331 Query: 122 DTRIAQRNF 130 D A + F Sbjct: 332 DLIEASKIF 340 >gi|308273513|emb|CBX30115.1| tRNA modification GTPase mnmE [uncultured Desulfobacterium sp.] Length = 460 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 55/199 (27%), Positives = 99/199 (49%), Gaps = 14/199 (7%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 I + L++ + GRPNVGKS+L+N LL R + S G TRD + + P IFDTA Sbjct: 220 IREGLKVVIAGRPNVGKSSLMNVLLKKERSIVTSIPGTTRDIIDETIIISGIPAVIFDTA 279 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G + +E+ ++K+++ + + + +LD PF + D +++ V +++ Sbjct: 280 GFHNT---VDPVEEIGIQKALEIINNSDIILFMLDVINPFTEDDRTLLEIV--KDKELIV 334 Query: 320 ALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWK 379 LNK D++++ N L ++ K +K P I +S G+D L ++ EI Sbjct: 335 VLNKIDLLNE--NSLIEIN-KELKCFP------IVRVSSLCNTGIDVLKETIKEITTKSV 385 Query: 380 TRITTSYLNSWLQKTQLQN 398 + + + QKT ++N Sbjct: 386 HSDCSCIVPNLRQKTAIEN 404 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 43/119 (36%), Positives = 67/119 (56%), Gaps = 5/119 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + I G PNVGKS+L N L+KK+ ++V + PG TRD + II+G+ I DTAG + Sbjct: 226 VVIAGRPNVGKSSLMNVLLKKERSIVTSIPGTTRDIIDETIIISGIPAVIFDTAGFHN-- 283 Query: 65 NCSIAKQMNDQTELA-INEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 +++ Q L IN + +ILF++D T D + ++ K +I+V NK+D Sbjct: 284 TVDPVEEIGIQKALEIINNSDIILFMLDVINPFTEDDRTLLEIVKDK--ELIVVLNKID 340 >gi|329121701|ref|ZP_08250318.1| tRNA modification GTPase TrmE [Dialister micraerophilus DSM 19965] gi|327468171|gb|EGF13657.1| tRNA modification GTPase TrmE [Dialister micraerophilus DSM 19965] Length = 459 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 44/154 (28%), Positives = 87/154 (56%), Gaps = 3/154 (1%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AIVG PN GKS+L N L++++ A+V + PG TRD + ++G+ ++DTAGI +N Sbjct: 225 AIVGKPNAGKSSLLNTLLQEERAIVTDIPGTTRDTIEESISLSGIPLILMDTAGIRKTEN 284 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 + K ++ ++ +A L+L +IDS + D + + K+ +++ + ++ + Sbjct: 285 -KVEKIGIERARESMEKADLVLMVIDSSKELEESDKKLLEEISKRKAVVLLNKSDLEKKT 343 Query: 126 AQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVI 159 + + Y+ D ++EISA++ G ++L V+ Sbjct: 344 TKETVSK-YAKDLP-VLEISAKNKTGMNKLEKVL 375 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 40/127 (31%), Positives = 75/127 (59%), Gaps = 5/127 (3%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 I +R A+VG+PN GKS+L+N LL R + G TRD++ S + P+ + DTA Sbjct: 218 IKDGIRTAIVGKPNAGKSSLLNTLLQEERAIVTDIPGTTRDTIEESISLSGIPLILMDTA 277 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+RK +E+ ++++ +S+ + ++++D++ E+ D ++++ + + AVVL Sbjct: 278 GIRKTEN---KVEKIGIERARESMEKADLVLMVIDSSKELEESDKKLLEEI-SKRKAVVL 333 Query: 320 ALNKWDM 326 LNK D+ Sbjct: 334 -LNKSDL 339 >gi|172062136|ref|YP_001809788.1| tRNA modification GTPase TrmE [Burkholderia ambifaria MC40-6] gi|205829123|sp|B1YQJ5|MNME_BURA4 RecName: Full=tRNA modification GTPase mnmE gi|171994653|gb|ACB65572.1| tRNA modification GTPase TrmE [Burkholderia ambifaria MC40-6] Length = 464 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 49/188 (26%), Positives = 88/188 (46%), Gaps = 14/188 (7%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + L + + G+PNVGKS+L+N L G + +G TRD V+ + + P+ I DTA Sbjct: 223 LREGLSVVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTA 282 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R+ + +E+ + ++ + + + LLD+ D ++ + F G VV Sbjct: 283 GLRETE---DEVERIGIARTWSEIERADVVLHLLDSRTGMTADD-EVIAARFPGGVPVVR 338 Query: 320 ALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWK 379 LNK D+ +++ GD+ +S + G+G+D L +L I W+ Sbjct: 339 VLNKTDLTG---------VPACVEHPAAAGDLTEVHLSAKRGDGIDMLRAELLRIAG-WQ 388 Query: 380 TRITTSYL 387 YL Sbjct: 389 AGAEGVYL 396 Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 48/164 (29%), Positives = 85/164 (51%), Gaps = 12/164 (7%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 ++ + G PNVGKS+L N L ++A+V G TRD++ + G+ +I+DTAG+ + Sbjct: 228 SVVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRET 287 Query: 64 KN----CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 ++ IA+ ++ I A ++L L+DS+ G+T D I + +P++ V N Sbjct: 288 EDEVERIGIARTWSE-----IERADVVLHLLDSRTGMTADDEVIAARF-PGGVPVVRVLN 341 Query: 120 KMD-TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKI 162 K D T + + + D E V +SA+ G L + + +I Sbjct: 342 KTDLTGVPACVEHPAAAGDLTE-VHLSAKRGDGIDMLRAELLRI 384 >gi|77920732|ref|YP_358547.1| tRNA modification GTPase TrmE [Pelobacter carbinolicus DSM 2380] gi|77546815|gb|ABA90377.1| tRNA modification GTPase trmE [Pelobacter carbinolicus DSM 2380] Length = 461 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 43/152 (28%), Positives = 82/152 (53%), Gaps = 9/152 (5%) Query: 196 SVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEI 255 S + + + LR+ + G+PNVGKS+L+N LLG R + G TRD++ P+ I Sbjct: 218 SGRVLREGLRVLIFGKPNVGKSSLMNGLLGEARAIVTDIPGTTRDTIEEDLVLGGLPLRI 277 Query: 256 FDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGH 315 DTAG+R + +E++ V+++ V + + ++++D + + DL ++ F Sbjct: 278 VDTAGIRNT---LDPVEEEGVRRARSKVESADLVLLVIDGSQEMGEDDLLALE--FCRNR 332 Query: 316 AVVLALNKWDM----VSDKLNLLQDLRTKAIK 343 V++ +NK D+ +S L+ L +RT ++ Sbjct: 333 EVLVVINKCDLATLPISSALDGLPYVRTSVLE 364 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 62/118 (52%), Gaps = 3/118 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + I G PNVGKS+L N L+ + A+V + PG TRD + ++ G+ IVDTAGI + Sbjct: 228 VLIFGKPNVGKSSLMNGLLGEARAIVTDIPGTTRDTIEEDLVLGGLPLRIVDTAGIRNTL 287 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + + ++ + + A L+L +ID + D F R + + ++I NK D Sbjct: 288 D-PVEEEGVRRARSKVESADLVLLVIDGSQEMGEDDLLALEFCRNREVLVVI--NKCD 342 >gi|299135903|ref|ZP_07029087.1| tRNA modification GTPase TrmE [Acidobacterium sp. MP5ACTX8] gi|298602027|gb|EFI58181.1| tRNA modification GTPase TrmE [Acidobacterium sp. MP5ACTX8] Length = 506 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 41/129 (31%), Positives = 69/129 (53%), Gaps = 3/129 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMR-KP 264 +A+VGRPN GKS+L NRLL +R + G TRD+V S P+ + DTAG+R + Sbjct: 232 LALVGRPNAGKSSLFNRLLERDRAIVTPLPGTTRDTVEESLALGGIPLRLIDTAGLRLQG 291 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 R + E + +S +++ + +++ DAT +++ + S+ H +L LNK Sbjct: 292 DRPADEAEALGIARSHEALADADLVLLIHDATQTMTEEERTLAASLEGRPH--LLVLNKI 349 Query: 325 DMVSDKLNL 333 D+ +L Sbjct: 350 DLQGSDFSL 358 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 41/127 (32%), Positives = 70/127 (55%), Gaps = 15/127 (11%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI--- 60 ++A+VG PN GKS+LFNRL+++ A+V PG TRD + + G+ ++DTAG+ Sbjct: 231 SLALVGRPNAGKSSLFNRLLERDRAIVTPLPGTTRDTVEESLALGGIPLRLIDTAGLRLQ 290 Query: 61 ----AD-GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPII 115 AD + IA+ A+ +A L+L + D+ +T + + + L + P + Sbjct: 291 GDRPADEAEALGIARSHE-----ALADADLVLLIHDATQTMTEEERTLAASLEGR--PHL 343 Query: 116 IVSNKMD 122 +V NK+D Sbjct: 344 LVLNKID 350 >gi|253996999|ref|YP_003049063.1| GTP-binding protein Era [Methylotenera mobilis JLW8] gi|253983678|gb|ACT48536.1| GTP-binding protein Era [Methylotenera mobilis JLW8] Length = 310 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 76/157 (48%), Gaps = 7/157 (4%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AIVG PNVGKSTL N ++ K+A+ TR RL G + + VDT G Sbjct: 25 TVAIVGRPNVGKSTLLNHILGMKLAITSRKAQTTRHRLLGIHTTDDTQYLFVDTPGFQQK 84 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 ++ K +N + E ++LF+I+ + D + L K P I+V NK+D Sbjct: 85 HLNALNKGLNKTVTQVLTEVDVVLFVIEPMK-LGDADRKVLQLLSDKT-PTILVVNKLDL 142 Query: 124 RIAQRNFYEI---YSLD--FKEIVEISAEHDLGTSEL 155 + N + + L+ F EIV +SA+ L EL Sbjct: 143 MGDKGNILPLIQDFDLEFPFSEIVPVSAKKSLNLDEL 179 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 40/130 (30%), Positives = 64/130 (49%), Gaps = 6/130 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VGRPNVGKSTL+N +LG +T ++ TR + + DT G ++ Sbjct: 26 VAIVGRPNVGKSTLLNHILGMKLAITSRKAQTTRHRLLGIHTTDDTQYLFVDTPGFQQKH 85 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL-RIVDSVFNTGHAVVLALNKW 324 + K + K++ V T E +VL P + D R V + + +L +NK Sbjct: 86 L---NALNKGLNKTVTQVLT-EVDVVLF-VIEPMKLGDADRKVLQLLSDKTPTILVVNKL 140 Query: 325 DMVSDKLNLL 334 D++ DK N+L Sbjct: 141 DLMGDKGNIL 150 >gi|257095986|ref|YP_003169627.1| tRNA modification GTPase TrmE [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257048510|gb|ACV37698.1| tRNA modification GTPase TrmE [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 458 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 41/127 (32%), Positives = 73/127 (57%), Gaps = 4/127 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + +VG PNVGKS+L NRL ++A+V PG TRD + + G+ +++DTAG+ D + Sbjct: 231 VVLVGKPNVGKSSLLNRLAGDEVAIVTPLPGTTRDLVRSTLQVEGIPLHVIDTAGLRDTE 290 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD-- 122 + I + ++T I A +++ L+D++ G+ + I + K + + V NK+D Sbjct: 291 D-QIERLGIERTWREIERADVVVLLVDARTGVGDAERVILAKFPAK-LARVFVYNKIDLT 348 Query: 123 TRIAQRN 129 +R A+R Sbjct: 349 SRAAERR 355 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 47/171 (27%), Positives = 84/171 (49%), Gaps = 16/171 (9%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 L + +VG+PNVGKS+L+NRL G + G TRD V + + P+ + DTAG+R Sbjct: 229 LHVVLVGKPNVGKSSLLNRLAGDEVAIVTPLPGTTRDLVRSTLQVEGIPLHVIDTAGLRD 288 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 + +E+ ++++ + + + ++L+DA + R++ + F A V NK Sbjct: 289 TE---DQIERLGIERTWREIERADVVVLLVDARTGVGDAE-RVILAKFPAKLARVFVYNK 344 Query: 324 WDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEI 374 D+ S +A + + + I +S R+GEG + L +L I Sbjct: 345 IDLTS-----------RAAERREEADGVAI-MLSARSGEGSELLRQELLRI 383 >gi|308235186|ref|ZP_07665923.1| GTP-binding protein Era [Gardnerella vaginalis ATCC 14018] gi|311114841|ref|YP_003986062.1| GTP-binding protein Era [Gardnerella vaginalis ATCC 14019] gi|310946335|gb|ADP39039.1| GTP-binding protein Era [Gardnerella vaginalis ATCC 14019] Length = 354 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 60/202 (29%), Positives = 95/202 (47%), Gaps = 22/202 (10%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTL N L+ ++A+ + P TR + G +VDT GI + Sbjct: 49 VAVVGRPNVGKSTLMNALIGTQIAIASSRPETTRKAIRGILTTPNAQMVLVDTPGIHRPR 108 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLR----KKN--------I 112 + +++ND + ++ + I FL+ + I P D I S LR KK+ + Sbjct: 109 TL-LGQRLNDIVDESLADVDAIAFLLPADQEIGPGDRRILSRLRSDFAKKDASGNWVWKV 167 Query: 113 PIIIVSNKMDTRIAQR---NFYEIYSL-DFKEIVEISAEHDLGTSELHSVIFKIFKQKYP 168 P+I + K+DT + EI DF +IV +SA E+ V+ P Sbjct: 168 PLIGIVTKIDTLSRDELVSHLIEIQQFADFTDIVPVSALERDNVDEVKKVLI----DNLP 223 Query: 169 NHPLEMIENNKRNEESPKENIT 190 P +M +++ +EESP I Sbjct: 224 EGP-KMYPDDQLSEESPSSMIA 244 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 41/78 (52%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +AVVGRPNVGKSTL+N L+G + S+ TR ++ N + + DT G+ +P Sbjct: 49 VAVVGRPNVGKSTLMNALIGTQIAIASSRPETTRKAIRGILTTPNAQMVLVDTPGIHRPR 108 Query: 266 RITESLEQKTVKKSMQSV 283 + V +S+ V Sbjct: 109 TLLGQRLNDIVDESLADV 126 >gi|15893098|ref|NP_360812.1| tRNA modification GTPase TrmE [Rickettsia conorii str. Malish 7] gi|21363014|sp|Q92GE8|MNME_RICCN RecName: Full=tRNA modification GTPase mnmE gi|15620303|gb|AAL03713.1| possible thiophene and furan oxidation protein thdF [Rickettsia conorii str. Malish 7] Length = 445 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 40/125 (32%), Positives = 75/125 (60%), Gaps = 7/125 (5%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 L++A++G PNVGKS+L+N L+ + + + +G TRD + + +PI + DTAG+R+ Sbjct: 216 LKLAIIGPPNVGKSSLLNFLMQRDIAIVSNIAGTTRDIIEGHLDIGGYPIILQDTAGIRE 275 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFN-TGHAVVLALN 322 S ++ +EQ+ +K+++ S +T + I++ DA EK D I + + N + +N Sbjct: 276 ES--SDIIEQEGIKRAINSAKTADIKIIMFDA----EKLDSSINEDIINLIDENTITIIN 329 Query: 323 KWDMV 327 K D++ Sbjct: 330 KIDLI 334 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 43/129 (33%), Positives = 71/129 (55%), Gaps = 9/129 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKS+L N L+++ +A+V N G TRD + G I G + DTAGI + + Sbjct: 218 LAIIGPPNVGKSSLLNFLMQRDIAIVSNIAGTTRDIIEGHLDIGGYPIILQDTAGIRE-E 276 Query: 65 NCSIAKQMNDQTELAINE---AHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 + I +Q + + AIN A + + + D++ + + I + + + I II NK+ Sbjct: 277 SSDIIEQ--EGIKRAINSAKTADIKIIMFDAEKLDSSINEDIINLIDENTITII---NKI 331 Query: 122 DTRIAQRNF 130 D A + F Sbjct: 332 DLIEASKIF 340 >gi|260598949|ref|YP_003211520.1| GTPase Era [Cronobacter turicensis z3032] gi|260218126|emb|CBA32923.1| GTP-binding protein era homolog [Cronobacter turicensis z3032] Length = 301 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 50/178 (28%), Positives = 87/178 (48%), Gaps = 6/178 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N+L+ +K+++ TR R+ G VDT G+ + Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGEYQAIYVDTPGLHMEE 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN +I + L++F+++ TP D + + LR P+I+ NK+D Sbjct: 71 KRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLRDGKAPVILAINKVDNV 129 Query: 125 IAQRNF-----YEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 + + ++F +IV +SAE + + S++ K + + P + I + Sbjct: 130 QDKAELLPHLQFLGSQMNFLDIVPLSAETGMNVDTIASIVRKHLPEAIHHFPEDYITD 187 Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 44/134 (32%), Positives = 71/134 (52%), Gaps = 5/134 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS-VSISWNWKNHPIEIFDTAGMRKP 264 IA+VGRPNVGKSTL+N+LLG +T ++ TR V I + I + DT G+ Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGEYQAIYV-DTPGLHME 69 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 + ++ + K + S+ E I +++ T + D +++ + + V+LA+NK Sbjct: 70 EK--RAINRLMNKAASSSIGDVELVIFVVEGT-RWTPDDEMVLNKLRDGKAPVILAINKV 126 Query: 325 DMVSDKLNLLQDLR 338 D V DK LL L+ Sbjct: 127 DNVQDKAELLPHLQ 140 >gi|205829166|sp|Q0BAQ4|MNME_BURCM RecName: Full=tRNA modification GTPase mnmE Length = 464 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 49/188 (26%), Positives = 88/188 (46%), Gaps = 14/188 (7%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + L + + G+PNVGKS+L+N L G + +G TRD V+ + + P+ I DTA Sbjct: 223 LREGLSVVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTA 282 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R+ + +E+ + ++ + + + LLD+ D ++ + F G VV Sbjct: 283 GLRETE---DEVERIGIARTWSEIERADVVLHLLDSRTGMTADD-EVIAARFPGGVPVVR 338 Query: 320 ALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWK 379 LNK D+ +++ GD+ +S + G+G+D L +L I W+ Sbjct: 339 VLNKTDLTG---------VPACVEHPAAAGDLTEVHLSAKRGDGIDMLRAELLRIAG-WQ 388 Query: 380 TRITTSYL 387 YL Sbjct: 389 AGAEGVYL 396 Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 48/164 (29%), Positives = 85/164 (51%), Gaps = 12/164 (7%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 ++ + G PNVGKS+L N L ++A+V G TRD++ + G+ +I+DTAG+ + Sbjct: 228 SVVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRET 287 Query: 64 KN----CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 ++ IA+ ++ I A ++L L+DS+ G+T D I + +P++ V N Sbjct: 288 EDEVERIGIARTWSE-----IERADVVLHLLDSRTGMTADDEVIAARF-PGGVPVVRVLN 341 Query: 120 KMD-TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKI 162 K D T + + + D E V +SA+ G L + + +I Sbjct: 342 KTDLTGVPACVEHPAAAGDLTE-VHLSAKRGDGIDMLRAELLRI 384 >gi|224023939|ref|ZP_03642305.1| hypothetical protein BACCOPRO_00656 [Bacteroides coprophilus DSM 18228] gi|224017161|gb|EEF75173.1| hypothetical protein BACCOPRO_00656 [Bacteroides coprophilus DSM 18228] Length = 476 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 54/177 (30%), Positives = 89/177 (50%), Gaps = 11/177 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VG N GKSTL+N LL R + G TRD + + N DTAG+R+ + Sbjct: 228 VAIVGETNAGKSTLLNALLNEERAIVSDIHGTTRDVIEDTMNLGGITFRFIDTAGIRETT 287 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVF--NTGHAVVLALNK 323 ESL +++S Q + + + ++DAT E+Q ++ D + G +V+ LNK Sbjct: 288 DTIESL---GIERSFQKLDQADIVLWIIDATCA-EEQYHQLADKILPRCEGKHLVIVLNK 343 Query: 324 WDMVS--DKLNLLQDLRTK-AIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKL 377 D++S D Q R K + +LP+ D + ++S + EGL L +++ L Sbjct: 344 VDLLSPADSSADEQLARLKTTLPDLPE--DACVLSLSAKQKEGLSQLQKQLVDFTAL 398 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 66/119 (55%), Gaps = 2/119 (1%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG N GKSTL N L+ ++ A+V + G TRD + + G+ F +DTAGI + Sbjct: 228 VAIVGETNAGKSTLLNALLNEERAIVSDIHGTTRDVIEDTMNLGGITFRFIDTAGIRETT 287 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFL-RKKNIPIIIVSNKMD 122 + +I +++ +++A ++L++ID+ Y L R + ++IV NK+D Sbjct: 288 D-TIESLGIERSFQKLDQADIVLWIIDATCAEEQYHQLADKILPRCEGKHLVIVLNKVD 345 >gi|205422380|sp|Q39ZT0|MNME_PELCD RecName: Full=tRNA modification GTPase mnmE Length = 456 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 43/152 (28%), Positives = 82/152 (53%), Gaps = 9/152 (5%) Query: 196 SVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEI 255 S + + + LR+ + G+PNVGKS+L+N LLG R + G TRD++ P+ I Sbjct: 213 SGRVLREGLRVLIFGKPNVGKSSLMNGLLGEARAIVTDIPGTTRDTIEEDLVLGGLPLRI 272 Query: 256 FDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGH 315 DTAG+R + +E++ V+++ V + + ++++D + + DL ++ F Sbjct: 273 VDTAGIRNT---LDPVEEEGVRRARSKVESADLVLLVIDGSQEMGEDDLLALE--FCRNR 327 Query: 316 AVVLALNKWDM----VSDKLNLLQDLRTKAIK 343 V++ +NK D+ +S L+ L +RT ++ Sbjct: 328 EVLVVINKCDLATLPISSALDGLPYVRTSVLE 359 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 62/118 (52%), Gaps = 3/118 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + I G PNVGKS+L N L+ + A+V + PG TRD + ++ G+ IVDTAGI + Sbjct: 223 VLIFGKPNVGKSSLMNGLLGEARAIVTDIPGTTRDTIEEDLVLGGLPLRIVDTAGIRNTL 282 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + + ++ + + A L+L +ID + D F R + + ++I NK D Sbjct: 283 D-PVEEEGVRRARSKVESADLVLLVIDGSQEMGEDDLLALEFCRNREVLVVI--NKCD 337 >gi|307132117|ref|YP_003884133.1| membrane-associated, 16S rRNA-binding GTPase [Dickeya dadantii 3937] gi|306529646|gb|ADM99576.1| membrane-associated, 16S rRNA-binding GTPase [Dickeya dadantii 3937] Length = 301 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 53/183 (28%), Positives = 90/183 (49%), Gaps = 20/183 (10%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYG-------QAIINGVIFNIVDT 57 +AIVG PNVGKSTL N+L+ +K+++ P TR R+ G QAI VDT Sbjct: 11 VAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGIHTEGPYQAI-------YVDT 63 Query: 58 AGIADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIV 117 G+ + +I + MN +I + LI+F+++ T D + + LR + P+++ Sbjct: 64 PGLHIEEKRAINRLMNRAASSSIGDVELIIFVVEG-THWTDDDEMVVNKLRDQKTPVLLA 122 Query: 118 SNKMD-----TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPL 172 NK+D T++ ++F ++V ISAE + +++ K Q + P Sbjct: 123 INKVDNVADKTKLLPHIQMLSEKMNFLDVVPISAEKGTNVDTIAAIVRKHLPQAIHHFPE 182 Query: 173 EMI 175 + I Sbjct: 183 DYI 185 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 42/130 (32%), Positives = 65/130 (50%), Gaps = 5/130 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMR-KP 264 +A+VGRPNVGKSTL+N+LLG +T + TR + + DT G+ + Sbjct: 11 VAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGIHTEGPYQAIYVDTPGLHIEE 70 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 R L + S+ V E I +++ T + D +V+ + + V+LA+NK Sbjct: 71 KRAINRLMNRAASSSIGDV---ELIIFVVEGT-HWTDDDEMVVNKLRDQKTPVLLAINKV 126 Query: 325 DMVSDKLNLL 334 D V+DK LL Sbjct: 127 DNVADKTKLL 136 >gi|83644633|ref|YP_433068.1| GTP-binding protein Era [Hahella chejuensis KCTC 2396] gi|83632676|gb|ABC28643.1| GTP-binding protein Era [Hahella chejuensis KCTC 2396] Length = 304 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 52/176 (29%), Positives = 86/176 (48%), Gaps = 6/176 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N ++ +K+++ P TR ++ G VDT G+ Sbjct: 16 VAIVGRPNVGKSTLLNHILGQKISITSKKPQTTRHQILGIKTEGDYQAIYVDTPGLHQLD 75 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 ++ + +N + AI +A +I+F++D K T D + S + K N P I+V NK+D Sbjct: 76 KKALNRVLNKASSSAIKDADVIVFVVDRKRW-TEEDDYVLSKIAKVNRPRILVINKVDKL 134 Query: 125 IAQRNFYEIYS-----LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 + + +F+ I+ +SA L L +VI ++ Q P + I Sbjct: 135 ENKDDLLPFIDKVQKMCEFQHIIPLSALRGLNIDRLEAVINEMLPQGIHFFPEDQI 190 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 34/129 (26%), Positives = 65/129 (50%), Gaps = 3/129 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VGRPNVGKSTL+N +LG +T + TR + ++ DT G+ + Sbjct: 16 VAIVGRPNVGKSTLLNHILGQKISITSKKPQTTRHQILGIKTEGDYQAIYVDTPGLHQLD 75 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + ++L + K S +++ + + ++D E+ D ++ + +L +NK D Sbjct: 76 K--KALNRVLNKASSSAIKDADVIVFVVDRKRWTEEDDY-VLSKIAKVNRPRILVINKVD 132 Query: 326 MVSDKLNLL 334 + +K +LL Sbjct: 133 KLENKDDLL 141 >gi|297539124|ref|YP_003674893.1| GTP-binding protein Era [Methylotenera sp. 301] gi|297258471|gb|ADI30316.1| GTP-binding protein Era [Methylotenera sp. 301] Length = 307 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 57/183 (31%), Positives = 86/183 (46%), Gaps = 8/183 (4%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAIVG PNVGKSTL N ++ K+A+ TR RL G F VDT G Sbjct: 22 TIAIVGRPNVGKSTLLNHILGMKLAITSRKAQTTRHRLLGIHTTEDTQFLFVDTPGFQQK 81 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 ++ K +N + E ++LF+I+ + D + + L K P I+V NK D Sbjct: 82 HLNTLNKGLNKTVTQVLTEVDVVLFVIEPMK-LGEADRKVLALLSDKP-PTILVVNKSDL 139 Query: 124 RIAQRNFYEI---YSLD--FKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPL-EMIEN 177 + N + + L+ F +IV +SA+ L EL I K ++ + E+ + Sbjct: 140 MGDKGNLLPLIQDFDLEFPFTDIVPVSAKKSLNLDELLHTIRKYLPEQAAIYAEDELTDK 199 Query: 178 NKR 180 N+R Sbjct: 200 NER 202 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 37/129 (28%), Positives = 67/129 (51%), Gaps = 4/129 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA+VGRPNVGKSTL+N +LG +T ++ TR + ++ DT G ++ Sbjct: 23 IAIVGRPNVGKSTLLNHILGMKLAITSRKAQTTRHRLLGIHTTEDTQFLFVDTPGFQQKH 82 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 T + K + K++ V T ++ + + + D +++ ++ + +L +NK D Sbjct: 83 LNTLN---KGLNKTVTQVLTEVDVVLFVIEPMKLGEADRKVL-ALLSDKPPTILVVNKSD 138 Query: 326 MVSDKLNLL 334 ++ DK NLL Sbjct: 139 LMGDKGNLL 147 >gi|283796159|ref|ZP_06345312.1| GTP-binding protein Era [Clostridium sp. M62/1] gi|291076378|gb|EFE13742.1| GTP-binding protein Era [Clostridium sp. M62/1] gi|295092205|emb|CBK78312.1| GTP-binding protein Era [Clostridium cf. saccharolyticum K10] Length = 301 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 54/169 (31%), Positives = 83/169 (49%), Gaps = 20/169 (11%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLY-------GQAIINGVIFNIVDT 57 + ++G PNVGKSTL N L+ +K+A+ + P TR+R+ GQ +IF +DT Sbjct: 10 VTLIGRPNVGKSTLMNHLIGQKIAITSDKPQTTRNRIQTVYTDERGQ-----IIF--LDT 62 Query: 58 AGIADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIV 117 GI KN + + M E + E +IL+L++ I + I L+K P+I+V Sbjct: 63 PGIHKAKN-KLGEYMVSVAEHTLKEVDVILWLVEPTTFIGAGERHIAEQLKKVKTPVILV 121 Query: 118 SNKMDTRIAQRN---FYEIYS--LDFKEIVEISAEHDLGTSELHSVIFK 161 NK DT + + F Y +F EI+ SA + + IFK Sbjct: 122 INKTDTIKNKEDILTFIAAYKDICEFAEIIPASALKEKNIDAVKDCIFK 170 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 33/129 (25%), Positives = 63/129 (48%), Gaps = 3/129 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 + ++GRPNVGKSTL+N L+G +T + TR+ + + + I DT G+ K Sbjct: 10 VTLIGRPNVGKSTLMNHLIGQKIAITSDKPQTTRNRIQTVYTDERGQIIFLDTPGIHKAK 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + V + +++ + + L++ T + I + + V+L +NK D Sbjct: 70 N---KLGEYMVSVAEHTLKEVDVILWLVEPTTFIGAGERHIAEQLKKVKTPVILVINKTD 126 Query: 326 MVSDKLNLL 334 + +K ++L Sbjct: 127 TIKNKEDIL 135 >gi|313158073|gb|EFR57478.1| tRNA modification GTPase TrmE [Alistipes sp. HGB5] Length = 476 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 40/95 (42%), Positives = 60/95 (63%), Gaps = 1/95 (1%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 +AIVGAPNVGKSTL NRL+ ++ A+V + G TRD + +A I+G++F +DTAGI Sbjct: 221 AVAIVGAPNVGKSTLLNRLLNEERAMVSDIAGTTRDIIEERANIDGIVFRFLDTAGIRS- 279 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITP 98 N ++ + +T +I A +I+ LID+ P Sbjct: 280 TNDTLEQMGIARTMSSIERAQIIIRLIDASQPAVP 314 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 37/99 (37%), Positives = 56/99 (56%), Gaps = 3/99 (3%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 I + + +A+VG PNVGKSTL+NRLL R + +G TRD + N DTA Sbjct: 216 IKEGVAVAIVGAPNVGKSTLLNRLLNEERAMVSDIAGTTRDIIEERANIDGIVFRFLDTA 275 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 G+R + ++LEQ + ++M S+ + I L+DA+ P Sbjct: 276 GIRSTN---DTLEQMGIARTMSSIERAQIIIRLIDASQP 311 >gi|53717720|ref|YP_106706.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei K96243] gi|53724896|ref|YP_104852.1| tRNA modification GTPase TrmE [Burkholderia mallei ATCC 23344] gi|126440482|ref|YP_001057151.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 668] gi|126454342|ref|YP_001064396.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 1106a] gi|134281363|ref|ZP_01768071.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 305] gi|167717471|ref|ZP_02400707.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei DM98] gi|167736506|ref|ZP_02409280.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 14] gi|167813583|ref|ZP_02445263.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 91] gi|167822125|ref|ZP_02453596.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 9] gi|167843730|ref|ZP_02469238.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei B7210] gi|167892208|ref|ZP_02479610.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 7894] gi|167900719|ref|ZP_02487924.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei NCTC 13177] gi|167908938|ref|ZP_02496029.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 112] gi|167916978|ref|ZP_02504069.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei BCC215] gi|217423934|ref|ZP_03455434.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 576] gi|226193161|ref|ZP_03788771.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei Pakistan 9] gi|237810287|ref|YP_002894738.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei MSHR346] gi|242317582|ref|ZP_04816598.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 1106b] gi|254184155|ref|ZP_04890746.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 1655] gi|254194641|ref|ZP_04901072.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei S13] gi|254298579|ref|ZP_04966030.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 406e] gi|81380766|sp|Q63YV9|MNME_BURPS RecName: Full=tRNA modification GTPase mnmE gi|81603688|sp|Q62EM6|MNME_BURMA RecName: Full=tRNA modification GTPase mnmE gi|205829148|sp|A3NPX5|MNME_BURP0 RecName: Full=tRNA modification GTPase mnmE gi|205829149|sp|A3N480|MNME_BURP6 RecName: Full=tRNA modification GTPase mnmE gi|205829160|sp|A1V7D3|MNME_BURMS RecName: Full=tRNA modification GTPase mnmE gi|205829167|sp|A3MS17|MNME_BURM7 RecName: Full=tRNA modification GTPase mnmE gi|205829168|sp|A2S8D8|MNME_BURM9 RecName: Full=tRNA modification GTPase mnmE gi|52208134|emb|CAH34064.1| putative tRNA modification GTPase [Burkholderia pseudomallei K96243] gi|52428319|gb|AAU48912.1| tRNA modification GTPase TrmE [Burkholderia mallei ATCC 23344] gi|126219975|gb|ABN83481.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 668] gi|126227984|gb|ABN91524.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 1106a] gi|134247030|gb|EBA47116.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 305] gi|157808553|gb|EDO85723.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 406e] gi|169651391|gb|EDS84084.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei S13] gi|184214687|gb|EDU11730.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 1655] gi|217392997|gb|EEC33019.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 576] gi|225934761|gb|EEH30738.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei Pakistan 9] gi|237505603|gb|ACQ97921.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei MSHR346] gi|242140821|gb|EES27223.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 1106b] Length = 467 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 40/119 (33%), Positives = 69/119 (57%), Gaps = 2/119 (1%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 ++ + G PNVGKS+L N L ++A+V G TRD++ I G+ +I+DTAG+ + Sbjct: 228 SVVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQIEGIPLHIIDTAGLRET 287 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 ++ + K +T I A ++L L+D+++G+ P D AI + +P++ V NK D Sbjct: 288 ED-EVEKIGIARTWGEIERADVVLHLLDARSGLGPGDEAIAARF-PDGVPVVRVLNKTD 344 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 50/188 (26%), Positives = 90/188 (47%), Gaps = 11/188 (5%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + L + + G+PNVGKS+L+N L G + +G TRD V+ + + P+ I DTA Sbjct: 223 LREGLSVVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQIEGIPLHIIDTA 282 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R+ + +E+ + ++ + + + LLDA D I + F G VV Sbjct: 283 GLRETE---DEVEKIGIARTWGEIERADVVLHLLDARSGLGPGDEAIA-ARFPDGVPVVR 338 Query: 320 ALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWK 379 LNK D+ ++ + A ++ ++ +S + G+G+D L +L I W+ Sbjct: 339 VLNKTDLTGAPASVTRTGGGAARADVCEV------RLSAKRGDGIDLLRGELLRIAG-WQ 391 Query: 380 TRITTSYL 387 + YL Sbjct: 392 AGAESVYL 399 >gi|296333313|ref|ZP_06875766.1| GTP-binding protein Era [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675182|ref|YP_003866854.1| GTP-binding protein Era [Bacillus subtilis subsp. spizizenii str. W23] gi|296149511|gb|EFG90407.1| GTP-binding protein Era [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413426|gb|ADM38545.1| GTP-binding protein Era [Bacillus subtilis subsp. spizizenii str. W23] Length = 301 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 47/146 (32%), Positives = 76/146 (52%), Gaps = 5/146 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 ++I+G PNVGKST NR++ +K+A++ + P TR+++ G +DT GI K Sbjct: 11 VSIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKVQGVLTTGTSQTIFIDTPGIHKPK 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + M + + E LILF+I+++ G D I L+K + P+ ++ NK+D Sbjct: 71 H-KLGDFMMKVAQNTLKEVDLILFMINAEEGYGKGDEFIIEKLQKMSTPVFLIVNKIDKI 129 Query: 125 IAQRNFYEIYSLD----FKEIVEISA 146 + I FKEIV ISA Sbjct: 130 HPDQLLLLIDEYRGRYPFKEIVPISA 155 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 36/132 (27%), Positives = 64/132 (48%), Gaps = 4/132 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 ++++GRPNVGKST +NR++G + + TR+ V DT G+ KP Sbjct: 11 VSIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKVQGVLTTGTSQTIFIDTPGIHKPK 70 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L +K + +++ + + +++A + K D I++ + V L +NK D Sbjct: 71 H---KLGDFMMKVAQNTLKEVDLILFMINAEEGYGKGDEFIIEKLQKMSTPVFLIVNKID 127 Query: 326 MVS-DKLNLLQD 336 + D+L LL D Sbjct: 128 KIHPDQLLLLID 139 >gi|76811890|ref|YP_331723.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 1710b] gi|254186626|ref|ZP_04893143.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei Pasteur 52237] gi|254261025|ref|ZP_04952079.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 1710a] gi|123600728|sp|Q3JXI0|MNME_BURP1 RecName: Full=tRNA modification GTPase mnmE gi|76581343|gb|ABA50818.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 1710b] gi|157934311|gb|EDO89981.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei Pasteur 52237] gi|254219714|gb|EET09098.1| tRNA modification GTPase TrmE [Burkholderia pseudomallei 1710a] Length = 467 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 40/119 (33%), Positives = 69/119 (57%), Gaps = 2/119 (1%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 ++ + G PNVGKS+L N L ++A+V G TRD++ I G+ +I+DTAG+ + Sbjct: 228 SVVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQIEGIPLHIIDTAGLRET 287 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 ++ + K +T I A ++L L+D+++G+ P D AI + +P++ V NK D Sbjct: 288 ED-EVEKIGIARTWGEIERADVVLHLLDARSGLGPGDEAIAARF-PDGVPVVRVLNKTD 344 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 50/188 (26%), Positives = 90/188 (47%), Gaps = 11/188 (5%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + L + + G+PNVGKS+L+N L G + +G TRD V+ + + P+ I DTA Sbjct: 223 LREGLSVVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQIEGIPLHIIDTA 282 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R+ + +E+ + ++ + + + LLDA D I + F G VV Sbjct: 283 GLRETE---DEVEKIGIARTWGEIERADVVLHLLDARSGLGPGDEAIA-ARFPDGVPVVR 338 Query: 320 ALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWK 379 LNK D+ ++ + A ++ ++ +S + G+G+D L +L I W+ Sbjct: 339 VLNKTDLTGAPASVTRTGGGAARADVCEV------RLSAKRGDGIDLLRGELLRIAG-WQ 391 Query: 380 TRITTSYL 387 + YL Sbjct: 392 AGAESVYL 399 >gi|160895175|ref|ZP_02075948.1| hypothetical protein CLOL250_02735 [Clostridium sp. L2-50] gi|156863209|gb|EDO56640.1| hypothetical protein CLOL250_02735 [Clostridium sp. L2-50] Length = 301 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 50/161 (31%), Positives = 80/161 (49%), Gaps = 5/161 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKSTL N+L+ +K+A+ + TR+R+ + +DT GI K Sbjct: 10 VAIIGRPNVGKSTLMNQLIGQKIAITSSKAQTTRNRIQTVYTSDEGQIVFLDTPGINRAK 69 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N + + M E +NE ++++++++ I + I L + PIIIV NK+D Sbjct: 70 N-KLGEYMLKVAEGTLNEVDVVMWIVEATTFIGAGERYIIEQLERVKTPIIIVVNKIDAV 128 Query: 125 IAQRNFYEIY----SLDFKEIVEISAEHDLGTSELHSVIFK 161 + F I + EIV +SA EL +FK Sbjct: 129 SEEEVFKAISTYKDACSHAEIVPVSALKGKNKDELIKTLFK 169 Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 67/125 (53%), Gaps = 3/125 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKSTL+N+L+G +T S++ TR+ + + I DT G+ + Sbjct: 10 VAIIGRPNVGKSTLMNQLIGQKIAITSSKAQTTRNRIQTVYTSDEGQIVFLDTPGI---N 66 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 R L + +K + ++ + + +++AT + I++ + +++ +NK D Sbjct: 67 RAKNKLGEYMLKVAEGTLNEVDVVMWIVEATTFIGAGERYIIEQLERVKTPIIIVVNKID 126 Query: 326 MVSDK 330 VS++ Sbjct: 127 AVSEE 131 >gi|238899053|ref|YP_002924735.1| GTPase involved in tRNA modification and in thiophene and furan oxidation [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|259495842|sp|C4K7P4|MNME_HAMD5 RecName: Full=tRNA modification GTPase mnmE gi|229466813|gb|ACQ68587.1| GTPase involved in tRNA modification and in thiophene and furan oxidation [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 458 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 46/126 (36%), Positives = 68/126 (53%), Gaps = 13/126 (10%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 I I G PNVGKS+L N L ++ A+V PG TRD L Q ING+ +I+DTAG+ + + Sbjct: 221 IVIAGRPNVGKSSLLNALTGRETAIVTQIPGTTRDVLREQIQINGMPLHIIDTAGLRETE 280 Query: 65 N----CSIAKQMNDQTELAINEAHLILFLID----SKAGITPYDHAITSFLRKKNIPIII 116 + I + N+ I +A ILF++D S+ I P + L + +PI + Sbjct: 281 DPVEKIGIERAWNE-----IEQADRILFIVDGSTSSEKTIYPLWPEWEARLSRSRLPITL 335 Query: 117 VSNKMD 122 + NK D Sbjct: 336 IRNKSD 341 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/174 (24%), Positives = 78/174 (44%), Gaps = 27/174 (15%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + ++I + GRPNVGKS+L+N L G + G TRD + P+ I DTA Sbjct: 215 LREGMKIVIAGRPNVGKSSLLNALTGRETAIVTQIPGTTRDVLREQIQINGMPLHIIDTA 274 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ--------DLRIVDSVF 311 G+R+ + +E+ ++++ + + + ++D + EK + R+ S Sbjct: 275 GLRETE---DPVEKIGIERAWNEIEQADRILFIVDGSTSSEKTIYPLWPEWEARLSRSRL 331 Query: 312 NTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLD 365 + L NK D+ + + L + I ++S RTGEG+D Sbjct: 332 ----PITLIRNKSDITGEDVALTETEEGTFI------------SLSARTGEGID 369 >gi|226315527|ref|YP_002775423.1| tRNA modification GTPase [Brevibacillus brevis NBRC 100599] gi|226098477|dbj|BAH46919.1| probable tRNA modification GTPase [Brevibacillus brevis NBRC 100599] Length = 458 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 51/160 (31%), Positives = 86/160 (53%), Gaps = 7/160 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N LV+++ A+V + G TRD + + GV ++DTAGI D ++ Sbjct: 224 AIIGRPNVGKSSLLNSLVQEEKAIVTDVAGTTRDVIEEYVNVRGVPLRLIDTAGIRDTED 283 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 + K +++ + +A L+L +I+ ++ D+AI F K +I++ NK D + Sbjct: 284 I-VEKIGVEKSRQLLQKADLVLLVINYNEPLSADDYAI--FEAAKGFHVIVIVNKFD--L 338 Query: 126 AQRNFYEIYSLDFKE--IVEISAEHDLGTSELHSVIFKIF 163 Q+ E F + ++ SA + G L I +IF Sbjct: 339 PQKVDLEEIKRHFPQQPLIMTSAREETGIDLLEQAIGEIF 378 Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 39/129 (30%), Positives = 71/129 (55%), Gaps = 5/129 (3%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L A++GRPNVGKS+L+N L+ + + +G TRD + N + P+ + D Sbjct: 215 KILREGLSTAIIGRPNVGKSSLLNSLVQEEKAIVTDVAGTTRDVIEEYVNVRGVPLRLID 274 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R I E + V+KS Q ++ + +++++ P D I ++ G V Sbjct: 275 TAGIRDTEDIVEKI---GVEKSRQLLQKADLVLLVINYNEPLSADDYAIFEAA--KGFHV 329 Query: 318 VLALNKWDM 326 ++ +NK+D+ Sbjct: 330 IVIVNKFDL 338 >gi|314935198|ref|ZP_07842551.1| tRNA modification GTPase TrmE [Staphylococcus hominis subsp. hominis C80] gi|313656533|gb|EFS20272.1| tRNA modification GTPase TrmE [Staphylococcus hominis subsp. hominis C80] Length = 459 Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 43/116 (37%), Positives = 67/116 (57%), Gaps = 3/116 (2%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PNVGKS++ N L++ A+V G TRD L + GV +VDTAGI D ++ Sbjct: 226 IVGKPNVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRDTEDI 285 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + K +++ A++EA LILF++++ +T D + + KN I++ NK D Sbjct: 286 -VEKIGVERSRKALSEADLILFVLNNNEPLTEEDRTLYEVI--KNEDAIVIVNKTD 338 Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 49/174 (28%), Positives = 90/174 (51%), Gaps = 14/174 (8%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L +VG+PNVGKS+++N L+ N+ + +G TRD + N + P+ + D Sbjct: 216 KIMREGLSTVIVGKPNVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVD 275 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R I E + V++S +++ + + +L+ P ++D R + V A+ Sbjct: 276 TAGIRDTEDIVEKI---GVERSRKALSEADLILFVLNNNEPLTEED-RTLYEVIKNEDAI 331 Query: 318 VLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSV 371 V+ +NK D L + L + +K + IGD + S EG+D+L + + Sbjct: 332 VI-VNKTD-------LERRLDIEEVKTM--IGDTPLIQTSMLKQEGVDELELQI 375 >gi|295115531|emb|CBL36378.1| GTP-binding protein Era [butyrate-producing bacterium SM4/1] Length = 301 Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 53/166 (31%), Positives = 83/166 (50%), Gaps = 14/166 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIING----VIFNIVDTAGI 60 + ++G PNVGKSTL N L+ +K+A+ + P TR+R+ Q + +IF +DT GI Sbjct: 10 VTLIGRPNVGKSTLMNHLIGQKIAITSDKPQTTRNRI--QTVYTDERGQIIF--LDTPGI 65 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 KN + + M E + E +IL+L++ I + I L+K P+I+V NK Sbjct: 66 HKAKN-KLGEYMVSVAEHTLKEVDVILWLVEPTTFIGAGERHIAEQLKKVKTPVILVINK 124 Query: 121 MDTRIAQRN---FYEIYS--LDFKEIVEISAEHDLGTSELHSVIFK 161 DT + + F Y +F EI+ SA + + IFK Sbjct: 125 TDTIKNKEDILTFIAAYKDICEFAEIIPASALKEKNIDAVKDCIFK 170 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 33/129 (25%), Positives = 63/129 (48%), Gaps = 3/129 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 + ++GRPNVGKSTL+N L+G +T + TR+ + + + I DT G+ K Sbjct: 10 VTLIGRPNVGKSTLMNHLIGQKIAITSDKPQTTRNRIQTVYTDERGQIIFLDTPGIHKAK 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + V + +++ + + L++ T + I + + V+L +NK D Sbjct: 70 N---KLGEYMVSVAEHTLKEVDVILWLVEPTTFIGAGERHIAEQLKKVKTPVILVINKTD 126 Query: 326 MVSDKLNLL 334 + +K ++L Sbjct: 127 TIKNKEDIL 135 >gi|185179024|ref|ZP_02964773.1| GTP-binding protein Era [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188024049|ref|ZP_02996802.1| GTP-binding protein Era [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188518321|ref|ZP_03003835.1| GTP-binding protein Era [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|188524324|ref|ZP_03004361.1| GTP-binding protein Era [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195867961|ref|ZP_03079958.1| GTP-binding protein Era [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198273309|ref|ZP_03205845.1| GTP-binding protein Era [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209554232|ref|YP_002284938.1| GTP-binding protein Era [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225550907|ref|ZP_03771856.1| GTP-binding protein [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|225551511|ref|ZP_03772457.1| GTP-binding protein [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|226741403|sp|B5ZBZ8|ERA_UREU1 RecName: Full=GTPase Era gi|184209115|gb|EDU06158.1| GTP-binding protein Era [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188019082|gb|EDU57122.1| GTP-binding protein Era [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188998143|gb|EDU67240.1| GTP-binding protein Era [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|195659806|gb|EDX53186.1| GTP-binding protein Era [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195660357|gb|EDX53617.1| GTP-binding protein Era [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198249829|gb|EDY74609.1| GTP-binding protein Era [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209541733|gb|ACI59962.1| GTP-binding protein Era [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225379326|gb|EEH01691.1| GTP-binding protein [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|225380061|gb|EEH02423.1| GTP-binding protein [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 300 Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 50/163 (30%), Positives = 91/163 (55%), Gaps = 19/163 (11%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYG--QAIINGVIFNIVDTAGIAD 62 +AIVG PNVGKSTL N +++KK++++ N P TR+ + + + +IF DT G + Sbjct: 8 VAIVGKPNVGKSTLINAIMRKKVSIISNKPQTTRNAIKEIYEDDDSAIIF--TDTPGFHE 65 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLR---KKNIPIIIV-- 117 N + +N + E++ EA++ILF+ ++ D I + ++ K+N+ ++I Sbjct: 66 PSN-KLDLFLNHEIEVSYKEANVILFVSSMDKELSEDDFEIINLIKESNKENVILVISKA 124 Query: 118 -----SNKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 +K+D R+ Q N Y + FK++++ISA H + +L Sbjct: 125 EVAKNQDKIDERVHQLNKY----IQFKDVIQISALHVINIDKL 163 Score = 43.1 bits (100), Expect = 0.098, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 35/60 (58%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VG+PNVGKSTLIN ++ + ++ TR+++ + + I DT G +PS Sbjct: 8 VAIVGKPNVGKSTLINAIMRKKVSIISNKPQTTRNAIKEIYEDDDSAIIFTDTPGFHEPS 67 >gi|229545169|ref|ZP_04433894.1| GTP-binding protein Era [Enterococcus faecalis TX1322] gi|229309714|gb|EEN75701.1| GTP-binding protein Era [Enterococcus faecalis TX1322] Length = 300 Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 50/147 (34%), Positives = 78/147 (53%), Gaps = 7/147 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL NR+V +K+A++ + TR+++ G I +DT GI K Sbjct: 10 VAIVGRPNVGKSTLLNRIVGQKIAIMSDKAQTTRNKIQGIYTIPEAQIVFIDTPGIHKPK 69 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + M + A+ E LF++ + D I L+ N P+ ++ NK+D + Sbjct: 70 H-RLGDFMVESAYNAMREVDATLFMVSADQKRGKGDDFIIERLKNNNSPVYLIINKID-K 127 Query: 125 IAQRNFYEI---YS--LDFKEIVEISA 146 + + I YS +DFKEI+ ISA Sbjct: 128 VHPDDLLSIIEDYSKQMDFKEIIPISA 154 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 53/184 (28%), Positives = 89/184 (48%), Gaps = 17/184 (9%) Query: 189 ITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNW 248 +T+E KS +A+VGRPNVGKSTL+NR++G + ++ TR+ + + Sbjct: 1 MTTEHKSGF--------VAIVGRPNVGKSTLLNRIVGQKIAIMSDKAQTTRNKIQGIYTI 52 Query: 249 KNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVD 308 I DT G+ KP L V+ + ++R + T+ ++ A K D I++ Sbjct: 53 PEAQIVFIDTPGIHKPKH---RLGDFMVESAYNAMREVDATLFMVSADQKRGKGDDFIIE 109 Query: 309 SVFNTGHAVVLALNKWDMV--SDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDD 366 + N V L +NK D V D L++++D + + +I I I+ G E L D Sbjct: 110 RLKNNNSPVYLIINKIDKVHPDDLLSIIEDYSKQM--DFKEI--IPISATEGNNFEHLMD 165 Query: 367 LMVS 370 ++V Sbjct: 166 VLVE 169 >gi|29376905|ref|NP_816059.1| GTP-binding protein Era [Enterococcus faecalis V583] gi|227519872|ref|ZP_03949921.1| GTP-binding protein Era [Enterococcus faecalis TX0104] gi|227553941|ref|ZP_03983988.1| GTP-binding protein Era [Enterococcus faecalis HH22] gi|229549418|ref|ZP_04438143.1| GTP-binding protein Era [Enterococcus faecalis ATCC 29200] gi|255975189|ref|ZP_05425775.1| small GTP-binding protein domain:GTP-binding:GTP-binding protein Era [Enterococcus faecalis T2] gi|256617033|ref|ZP_05473879.1| GTP-binding protein Era [Enterococcus faecalis ATCC 4200] gi|256763103|ref|ZP_05503683.1| small GTP-binding protein domain:GTP-binding:GTP-binding protein Era [Enterococcus faecalis T3] gi|256853771|ref|ZP_05559136.1| GTP-binding protein Era [Enterococcus faecalis T8] gi|256956687|ref|ZP_05560858.1| GTP-binding protein Era [Enterococcus faecalis DS5] gi|256961296|ref|ZP_05565467.1| small GTP-binding protein domain:GTP-binding:GTP-binding protein Era [Enterococcus faecalis Merz96] gi|256963577|ref|ZP_05567748.1| small GTP-binding protein domain:GTP-binding:GTP-binding protein Era [Enterococcus faecalis HIP11704] gi|257079642|ref|ZP_05574003.1| small GTP-binding protein domain:GTP-binding:GTP-binding protein Era [Enterococcus faecalis JH1] gi|257082012|ref|ZP_05576373.1| small GTP-binding protein domain:GTP-binding:GTP-binding protein Era [Enterococcus faecalis E1Sol] gi|257084563|ref|ZP_05578924.1| small GTP-binding protein domain:GTP-binding:GTP-binding protein Era [Enterococcus faecalis Fly1] gi|257087441|ref|ZP_05581802.1| small GTP-binding protein domain:GTP-binding:GTP-binding protein Era [Enterococcus faecalis D6] gi|257090600|ref|ZP_05584961.1| small GTP-binding protein [Enterococcus faecalis CH188] gi|257416648|ref|ZP_05593642.1| GTP-binding protein Era [Enterococcus faecalis AR01/DG] gi|257419864|ref|ZP_05596858.1| small GTP-binding protein Era [Enterococcus faecalis T11] gi|257421948|ref|ZP_05598938.1| GTP-binding protein Era [Enterococcus faecalis X98] gi|293383580|ref|ZP_06629490.1| GTP-binding protein Era [Enterococcus faecalis R712] gi|293387307|ref|ZP_06631863.1| GTP-binding protein Era [Enterococcus faecalis S613] gi|294780922|ref|ZP_06746276.1| GTP-binding protein Era [Enterococcus faecalis PC1.1] gi|307270833|ref|ZP_07552121.1| GTP-binding protein Era [Enterococcus faecalis TX4248] gi|307271516|ref|ZP_07552788.1| GTP-binding protein Era [Enterococcus faecalis TX0855] gi|307277156|ref|ZP_07558260.1| GTP-binding protein Era [Enterococcus faecalis TX2134] gi|307285808|ref|ZP_07565942.1| GTP-binding protein Era [Enterococcus faecalis TX0860] gi|307287711|ref|ZP_07567754.1| GTP-binding protein Era [Enterococcus faecalis TX0109] gi|307290538|ref|ZP_07570450.1| GTP-binding protein Era [Enterococcus faecalis TX0411] gi|312899839|ref|ZP_07759158.1| GTP-binding protein Era [Enterococcus faecalis TX0470] gi|312905132|ref|ZP_07764253.1| GTP-binding protein Era [Enterococcus faecalis TX0635] gi|312906130|ref|ZP_07765142.1| GTP-binding protein Era [Enterococcus faecalis DAPTO 512] gi|312909476|ref|ZP_07768331.1| GTP-binding protein Era [Enterococcus faecalis DAPTO 516] gi|312953489|ref|ZP_07772329.1| GTP-binding protein Era [Enterococcus faecalis TX0102] gi|81436511|sp|Q831T9|ERA_ENTFA RecName: Full=GTPase Era gi|29344370|gb|AAO82129.1| GTP-binding protein Era [Enterococcus faecalis V583] gi|227072666|gb|EEI10629.1| GTP-binding protein Era [Enterococcus faecalis TX0104] gi|227176927|gb|EEI57899.1| GTP-binding protein Era [Enterococcus faecalis HH22] gi|229305655|gb|EEN71651.1| GTP-binding protein Era [Enterococcus faecalis ATCC 29200] gi|255968061|gb|EET98683.1| small GTP-binding protein domain:GTP-binding:GTP-binding protein Era [Enterococcus faecalis T2] gi|256596560|gb|EEU15736.1| GTP-binding protein Era [Enterococcus faecalis ATCC 4200] gi|256684354|gb|EEU24049.1| small GTP-binding protein domain:GTP-binding:GTP-binding protein Era [Enterococcus faecalis T3] gi|256710714|gb|EEU25757.1| GTP-binding protein Era [Enterococcus faecalis T8] gi|256947183|gb|EEU63815.1| GTP-binding protein Era [Enterococcus faecalis DS5] gi|256951792|gb|EEU68424.1| small GTP-binding protein domain:GTP-binding:GTP-binding protein Era [Enterococcus faecalis Merz96] gi|256954073|gb|EEU70705.1| small GTP-binding protein domain:GTP-binding:GTP-binding protein Era [Enterococcus faecalis HIP11704] gi|256987672|gb|EEU74974.1| small GTP-binding protein domain:GTP-binding:GTP-binding protein Era [Enterococcus faecalis JH1] gi|256990042|gb|EEU77344.1| small GTP-binding protein domain:GTP-binding:GTP-binding protein Era [Enterococcus faecalis E1Sol] gi|256992593|gb|EEU79895.1| small GTP-binding protein domain:GTP-binding:GTP-binding protein Era [Enterococcus faecalis Fly1] gi|256995471|gb|EEU82773.1| small GTP-binding protein domain:GTP-binding:GTP-binding protein Era [Enterococcus faecalis D6] gi|256999412|gb|EEU85932.1| small GTP-binding protein [Enterococcus faecalis CH188] gi|257158476|gb|EEU88436.1| GTP-binding protein Era [Enterococcus faecalis ARO1/DG] gi|257161692|gb|EEU91652.1| small GTP-binding protein Era [Enterococcus faecalis T11] gi|257163772|gb|EEU93732.1| GTP-binding protein Era [Enterococcus faecalis X98] gi|291079092|gb|EFE16456.1| GTP-binding protein Era [Enterococcus faecalis R712] gi|291083205|gb|EFE20168.1| GTP-binding protein Era [Enterococcus faecalis S613] gi|294452048|gb|EFG20496.1| GTP-binding protein Era [Enterococcus faecalis PC1.1] gi|295113464|emb|CBL32101.1| GTP-binding protein Era [Enterococcus sp. 7L76] gi|306498393|gb|EFM67898.1| GTP-binding protein Era [Enterococcus faecalis TX0411] gi|306501449|gb|EFM70752.1| GTP-binding protein Era [Enterococcus faecalis TX0109] gi|306502569|gb|EFM71836.1| GTP-binding protein Era [Enterococcus faecalis TX0860] gi|306506086|gb|EFM75252.1| GTP-binding protein Era [Enterococcus faecalis TX2134] gi|306511788|gb|EFM80786.1| GTP-binding protein Era [Enterococcus faecalis TX0855] gi|306512834|gb|EFM81478.1| GTP-binding protein Era [Enterococcus faecalis TX4248] gi|310627776|gb|EFQ11059.1| GTP-binding protein Era [Enterococcus faecalis DAPTO 512] gi|310628698|gb|EFQ11981.1| GTP-binding protein Era [Enterococcus faecalis TX0102] gi|310631522|gb|EFQ14805.1| GTP-binding protein Era [Enterococcus faecalis TX0635] gi|311290149|gb|EFQ68705.1| GTP-binding protein Era [Enterococcus faecalis DAPTO 516] gi|311293089|gb|EFQ71645.1| GTP-binding protein Era [Enterococcus faecalis TX0470] gi|315025403|gb|EFT37335.1| GTP-binding protein Era [Enterococcus faecalis TX2137] gi|315030211|gb|EFT42143.1| GTP-binding protein Era [Enterococcus faecalis TX4000] gi|315032903|gb|EFT44835.1| GTP-binding protein Era [Enterococcus faecalis TX0017] gi|315035613|gb|EFT47545.1| GTP-binding protein Era [Enterococcus faecalis TX0027] gi|315144805|gb|EFT88821.1| GTP-binding protein Era [Enterococcus faecalis TX2141] gi|315146685|gb|EFT90701.1| GTP-binding protein Era [Enterococcus faecalis TX4244] gi|315150151|gb|EFT94167.1| GTP-binding protein Era [Enterococcus faecalis TX0012] gi|315152156|gb|EFT96172.1| GTP-binding protein Era [Enterococcus faecalis TX0031] gi|315155343|gb|EFT99359.1| GTP-binding protein Era [Enterococcus faecalis TX0043] gi|315159081|gb|EFU03098.1| GTP-binding protein Era [Enterococcus faecalis TX0312] gi|315161673|gb|EFU05690.1| GTP-binding protein Era [Enterococcus faecalis TX0645] gi|315164810|gb|EFU08827.1| GTP-binding protein Era [Enterococcus faecalis TX1302] gi|315166396|gb|EFU10413.1| GTP-binding protein Era [Enterococcus faecalis TX1341] gi|315170292|gb|EFU14309.1| GTP-binding protein Era [Enterococcus faecalis TX1342] gi|315173673|gb|EFU17690.1| GTP-binding protein Era [Enterococcus faecalis TX1346] gi|315574358|gb|EFU86549.1| GTP-binding protein Era [Enterococcus faecalis TX0309B] gi|315579040|gb|EFU91231.1| GTP-binding protein Era [Enterococcus faecalis TX0630] gi|315580167|gb|EFU92358.1| GTP-binding protein Era [Enterococcus faecalis TX0309A] gi|323481399|gb|ADX80838.1| GTP-binding protein Era [Enterococcus faecalis 62] gi|327535695|gb|AEA94529.1| GTP-binding protein Era [Enterococcus faecalis OG1RF] Length = 300 Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 50/147 (34%), Positives = 78/147 (53%), Gaps = 7/147 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL NR+V +K+A++ + TR+++ G I +DT GI K Sbjct: 10 VAIVGRPNVGKSTLLNRIVGQKIAIMSDKAQTTRNKIQGIYTIPEAQIVFIDTPGIHKPK 69 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + M + A+ E LF++ + D I L+ N P+ ++ NK+D + Sbjct: 70 H-RLGDFMVESAYNAMREVDATLFMVSADQKRGKGDDFIIERLKNNNSPVYLIINKID-K 127 Query: 125 IAQRNFYEI---YS--LDFKEIVEISA 146 + + I YS +DFKEI+ ISA Sbjct: 128 VHPDDLLSIIEDYSKQMDFKEIIPISA 154 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 49/167 (29%), Positives = 83/167 (49%), Gaps = 9/167 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VGRPNVGKSTL+NR++G + ++ TR+ + + I DT G+ KP Sbjct: 10 VAIVGRPNVGKSTLLNRIVGQKIAIMSDKAQTTRNKIQGIYTIPEAQIVFIDTPGIHKPK 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L V+ + ++R + T+ ++ A K D I++ + N V L +NK D Sbjct: 70 H---RLGDFMVESAYNAMREVDATLFMVSADQKRGKGDDFIIERLKNNNSPVYLIINKID 126 Query: 326 MV--SDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVS 370 V D L++++D + + +I I I+ G E L D++V Sbjct: 127 KVHPDDLLSIIEDYSKQM--DFKEI--IPISATEGNNFEHLMDVLVE 169 >gi|238917975|ref|YP_002931492.1| tRNA modification GTPase [Eubacterium eligens ATCC 27750] gi|238873335|gb|ACR73045.1| tRNA modification GTPase [Eubacterium eligens ATCC 27750] Length = 459 Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 51/158 (32%), Positives = 84/158 (53%), Gaps = 6/158 (3%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 I+G N GKS+L N L +++ A+V + G TRD L ++GV N++DTAGI + Sbjct: 227 ILGKTNAGKSSLLNVLAREERAIVTDIEGTTRDTLEEMINLSGVTLNLIDTAGIRKTDDV 286 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 + +N +LA A L+++++DS + D+ I ++ K + +I+ NK D +A Sbjct: 287 VESIGVNKAKKLA-EVADLVIYVVDSSRSLDDNDYEIMELIKDKKVLVIL--NKAD--LA 341 Query: 127 QRNFYE-IYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 Q E I + E V ISA+ + G EL + +F Sbjct: 342 QVTTAEDIKKIINCETVTISAKQETGIEELEETVKNMF 379 Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 44/168 (26%), Positives = 83/168 (49%), Gaps = 15/168 (8%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 +R ++G+ N GKS+L+N L R + G TRD++ N + + DTAG+RK Sbjct: 223 VRTVILGKTNAGKSSLLNVLAREERAIVTDIEGTTRDTLEEMINLSGVTLNLIDTAGIRK 282 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 + ES+ V K+ + + I ++D++ + D I++ + + V++ LNK Sbjct: 283 TDDVVESI---GVNKAKKLAEVADLVIYVVDSSRSLDDNDYEIMELIKD--KKVLVILNK 337 Query: 324 WDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSV 371 D+ ++ +D+ K I N + TIS + G+++L +V Sbjct: 338 ADLA--QVTTAEDI--KKIINCETV------TISAKQETGIEELEETV 375 >gi|228474138|ref|ZP_04058875.1| tRNA modification GTPase TrmE [Staphylococcus hominis SK119] gi|228271833|gb|EEK13170.1| tRNA modification GTPase TrmE [Staphylococcus hominis SK119] Length = 459 Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 43/116 (37%), Positives = 67/116 (57%), Gaps = 3/116 (2%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PNVGKS++ N L++ A+V G TRD L + GV +VDTAGI D ++ Sbjct: 226 IVGKPNVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRDTEDI 285 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + K +++ A++EA LILF++++ +T D + + KN I++ NK D Sbjct: 286 -VEKIGVERSRKALSEADLILFVLNNNEPLTEEDRTLYEVI--KNEDAIVIVNKTD 338 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 49/174 (28%), Positives = 90/174 (51%), Gaps = 14/174 (8%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L +VG+PNVGKS+++N L+ N+ + +G TRD + N + P+ + D Sbjct: 216 KIMREGLSTVIVGKPNVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVD 275 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R I E + V++S +++ + + +L+ P ++D R + V A+ Sbjct: 276 TAGIRDTEDIVEKI---GVERSRKALSEADLILFVLNNNEPLTEED-RTLYEVIKNEDAI 331 Query: 318 VLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSV 371 V+ +NK D L + L + +K + IGD + S EG+D+L + + Sbjct: 332 VI-VNKTD-------LERRLDIEEVKTM--IGDTPLIQTSMLKQEGIDELELQI 375 >gi|300214038|gb|ADJ78454.1| tRNA modification GTPase mnmE [Lactobacillus salivarius CECT 5713] Length = 464 Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 41/136 (30%), Positives = 80/136 (58%), Gaps = 6/136 (4%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L A+VGRPNVGKS+L+N LL ++ + +G TRD + N + P+++ D Sbjct: 221 KVLREGLATAIVGRPNVGKSSLLNHLLHEDKAIVTDIAGTTRDVIEEYVNVRGVPLKLID 280 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ + +E+ V++S +++ + +++L+A+ +D ++ + +G Sbjct: 281 TAGIRETE---DKVERIGVERSRKAIEQADLVMLVLNASEELTDEDKELIQA--TSGKKR 335 Query: 318 VLALNKWDMVSDKLNL 333 ++ LNK D+ KLN+ Sbjct: 336 IVILNKTDL-PRKLNM 350 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 45/176 (25%), Positives = 85/176 (48%), Gaps = 3/176 (1%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AIVG PNVGKS+L N L+ + A+V + G TRD + + GV ++DTAGI + ++ Sbjct: 230 AIVGRPNVGKSSLLNHLLHEDKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETED 289 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 + + +++ AI +A L++ ++++ +T D + K +I+ + ++ Sbjct: 290 -KVERIGVERSRKAIEQADLVMLVLNASEELTDEDKELIQATSGKKRIVILNKTDLPRKL 348 Query: 126 AQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 E+ D E++ S G +L I ++F N ++ N R+ Sbjct: 349 NMDEVRELVPED--ELITTSVLKKTGVDKLEEKIAELFFGGIENSQSTIMVTNARH 402 >gi|295398145|ref|ZP_06808194.1| tRNA modification GTPase TrmE [Aerococcus viridans ATCC 11563] gi|294973664|gb|EFG49442.1| tRNA modification GTPase TrmE [Aerococcus viridans ATCC 11563] Length = 463 Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 43/117 (36%), Positives = 70/117 (59%), Gaps = 3/117 (2%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AIVG PNVGKS+L N L++++ A+V + G TRD + I GV +VDTAGI D ++ Sbjct: 229 AIVGRPNVGKSSLLNALLREEKAIVTDIEGTTRDTVEEYINIRGVPLKLVDTAGIRDTED 288 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + + ++++ A+ EA L+L L++ +T D + S ++ II+ NK+D Sbjct: 289 V-VERIGVERSKKALMEAELVLLLLNQSEALTAGDRELLSL--TQDHKRIIIMNKID 342 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 67/125 (53%), Gaps = 5/125 (4%) Query: 207 AVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSR 266 A+VGRPNVGKS+L+N LL + + G TRD+V N + P+++ DTAG+R Sbjct: 229 AIVGRPNVGKSSLLNALLREEKAIVTDIEGTTRDTVEEYINIRGVPLKLVDTAGIRDTED 288 Query: 267 ITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 + E + V++S +++ E ++LL+ + D ++ H ++ +NK D+ Sbjct: 289 VVERI---GVERSKKALMEAELVLLLLNQSEALTAGDRELLS--LTQDHKRIIIMNKIDL 343 Query: 327 VSDKL 331 S L Sbjct: 344 PSQLL 348 >gi|13509049|emb|CAC35275.1| GTP binding protein homologue [Campylobacter jejuni] Length = 190 Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 56/192 (29%), Positives = 96/192 (50%), Gaps = 9/192 (4%) Query: 233 SQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVL 292 S +G T D V+ S K+ IE DTAG+RK +I + LE+ + ++ + + + +++ Sbjct: 3 SIAGTTIDPVNESVVHKDKVIEFVDTAGIRKRGKI-QGLERFALNRTEKILSHSQIALLV 61 Query: 293 LDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD---MVSDKLNLLQDLRTKAIKNLPQIG 349 LDA F + D RI V V++ LNKWD M DK +++L K L Sbjct: 62 LDAHEGFNELDERIAGLVAKHYLGVIIVLNKWDKSEMDFDKT--VKELHLDRFKFLAYAP 119 Query: 350 DIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNR 409 I ++ +SG+ L D +L+I + + +I TS LN+ ++ +P P + + + Sbjct: 120 VISVSALSGKRVHVLLD---KILQIFENFTQKIQTSKLNTLIENATRSHPLPHDYGKLVK 176 Query: 410 LKYITQIQSSPP 421 + Y Q +PP Sbjct: 177 IYYAVQYDLAPP 188 Score = 40.0 bits (92), Expect = 0.75, Method: Compositional matrix adjust. Identities = 41/168 (24%), Positives = 71/168 (42%), Gaps = 18/168 (10%) Query: 35 GITRDRLYGQAIINGVIFNIVDTAGIAD-GKNCSIAKQMNDQTELAINEAHLILFLIDSK 93 G T D + + + VDTAGI GK + + ++TE ++ + + L ++D+ Sbjct: 6 GTTIDPVNESVVHKDKVIEFVDTAGIRKRGKIQGLERFALNRTEKILSHSQIALLVLDAH 65 Query: 94 AGITPYDHAITSFLRKKNIPIIIVSNK-------MDTRIAQRNFYEIYSLDFKEIVEISA 146 G D I + K + +IIV NK D + + + L + ++ +SA Sbjct: 66 EGFNELDERIAGLVAKHYLGVIIVLNKWDKSEMDFDKTVKELHLDRFKFLAYAPVISVSA 125 Query: 147 EHDLGTSELHSV------IFKIFKQKYPNHPLE-MIENNKRNEESPKE 187 L +H + IF+ F QK L +IEN R+ P + Sbjct: 126 ---LSGKRVHVLLDKILQIFENFTQKIQTSKLNTLIENATRSHPLPHD 170 >gi|30264370|ref|NP_846747.1| GTP-binding protein Era [Bacillus anthracis str. Ames] gi|47529821|ref|YP_021170.1| GTP-binding protein Era [Bacillus anthracis str. 'Ames Ancestor'] gi|49187195|ref|YP_030447.1| GTP-binding protein Era [Bacillus anthracis str. Sterne] gi|65321672|ref|ZP_00394631.1| COG1159: GTPase [Bacillus anthracis str. A2012] gi|165872076|ref|ZP_02216716.1| GTP-binding protein Era [Bacillus anthracis str. A0488] gi|167634499|ref|ZP_02392819.1| GTP-binding protein Era [Bacillus anthracis str. A0442] gi|167638699|ref|ZP_02396975.1| GTP-binding protein Era [Bacillus anthracis str. A0193] gi|170687400|ref|ZP_02878617.1| GTP-binding protein Era [Bacillus anthracis str. A0465] gi|170707479|ref|ZP_02897933.1| GTP-binding protein Era [Bacillus anthracis str. A0389] gi|177653279|ref|ZP_02935531.1| GTP-binding protein Era [Bacillus anthracis str. A0174] gi|190566974|ref|ZP_03019890.1| GTP-binding protein Era [Bacillus anthracis Tsiankovskii-I] gi|227817076|ref|YP_002817085.1| GTP-binding protein Era [Bacillus anthracis str. CDC 684] gi|229602326|ref|YP_002868589.1| GTP-binding protein Era [Bacillus anthracis str. A0248] gi|254684057|ref|ZP_05147917.1| GTP-binding protein Era [Bacillus anthracis str. CNEVA-9066] gi|254736405|ref|ZP_05194111.1| GTP-binding protein Era [Bacillus anthracis str. Western North America USA6153] gi|254741443|ref|ZP_05199130.1| GTP-binding protein Era [Bacillus anthracis str. Kruger B] gi|254750881|ref|ZP_05202920.1| GTP-binding protein Era [Bacillus anthracis str. Vollum] gi|254757791|ref|ZP_05209818.1| GTP-binding protein Era [Bacillus anthracis str. Australia 94] gi|30259028|gb|AAP28233.1| GTP-binding protein Era [Bacillus anthracis str. Ames] gi|47504969|gb|AAT33645.1| GTP-binding protein Era [Bacillus anthracis str. 'Ames Ancestor'] gi|49181122|gb|AAT56498.1| GTP-binding protein Era [Bacillus anthracis str. Sterne] gi|164712207|gb|EDR17744.1| GTP-binding protein Era [Bacillus anthracis str. A0488] gi|167513547|gb|EDR88917.1| GTP-binding protein Era [Bacillus anthracis str. A0193] gi|167529951|gb|EDR92686.1| GTP-binding protein Era [Bacillus anthracis str. A0442] gi|170127723|gb|EDS96596.1| GTP-binding protein Era [Bacillus anthracis str. A0389] gi|170668595|gb|EDT19341.1| GTP-binding protein Era [Bacillus anthracis str. A0465] gi|172081561|gb|EDT66633.1| GTP-binding protein Era [Bacillus anthracis str. A0174] gi|190561965|gb|EDV15934.1| GTP-binding protein Era [Bacillus anthracis Tsiankovskii-I] gi|227004139|gb|ACP13882.1| GTP-binding protein Era [Bacillus anthracis str. CDC 684] gi|229266734|gb|ACQ48371.1| GTP-binding protein Era [Bacillus anthracis str. A0248] Length = 301 Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 44/147 (29%), Positives = 77/147 (52%), Gaps = 7/147 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 ++I+G PNVGKST NR++ +K+A++ + P TR+++ G N +DT GI K Sbjct: 11 VSIIGRPNVGKSTFLNRIIGQKIAIMSDKPQTTRNKIQGVYTENDSQVIFIDTPGIHKPK 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + M + + E ++LF++++ G + I L++ P+ +V NK+D + Sbjct: 71 H-KLGDFMVKMAQTTLKEVDIVLFMVNAVEGFGRGEEFIIEKLKETKQPVFLVINKID-Q 128 Query: 125 IAQRNFYEIYSL-----DFKEIVEISA 146 + E+ DF EIV ISA Sbjct: 129 VHPEQLLELIDQYRKLHDFAEIVPISA 155 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/161 (24%), Positives = 78/161 (48%), Gaps = 9/161 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 ++++GRPNVGKST +NR++G + + TR+ + + + + DT G+ KP Sbjct: 11 VSIIGRPNVGKSTFLNRIIGQKIAIMSDKPQTTRNKIQGVYTENDSQVIFIDTPGIHKPK 70 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L VK + +++ + + +++A F + + I++ + T V L +NK D Sbjct: 71 H---KLGDFMVKMAQTTLKEVDIVLFMVNAVEGFGRGEEFIIEKLKETKQPVFLVINKID 127 Query: 326 MVSDK--LNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 V + L L+ R + + +I + I+ + G E L Sbjct: 128 QVHPEQLLELIDQYRK--LHDFAEI--VPISALDGNNAEAL 164 >gi|282859538|ref|ZP_06268643.1| tRNA modification GTPase TrmE [Prevotella bivia JCVIHMP010] gi|282587766|gb|EFB92966.1| tRNA modification GTPase TrmE [Prevotella bivia JCVIHMP010] Length = 446 Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 43/121 (35%), Positives = 72/121 (59%), Gaps = 6/121 (4%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 ++AI+G NVGKSTL N+L+ ++ A+V N G TRD + ING+ F +DTAGI + Sbjct: 218 SVAIIGKTNVGKSTLLNQLLGEERAIVSNIEGTTRDVIEDTTDINGITFRFIDTAGIRE- 276 Query: 64 KNCSIAKQMNDQ-TELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + +Q+ Q T ++ A ++++++D Y+ I + +K PI++V NK+D Sbjct: 277 -TTDVVEQLGIQRTYKELDNAQIVMWILDIDPTQEEYNE-IKERVGEK--PIVVVRNKID 332 Query: 123 T 123 T Sbjct: 333 T 333 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 28/82 (34%), Positives = 49/82 (59%), Gaps = 1/82 (1%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 + + + + +A++G+ NVGKSTL+N+LLG R + + G TRD + + + D Sbjct: 211 QALKRGISVAIIGKTNVGKSTLLNQLLGEERAIVSNIEGTTRDVIEDTTDINGITFRFID 270 Query: 258 TAGMRKPSRITESLE-QKTVKK 278 TAG+R+ + + E L Q+T K+ Sbjct: 271 TAGIRETTDVVEQLGIQRTYKE 292 >gi|289209107|ref|YP_003461173.1| GTP-binding protein Era [Thioalkalivibrio sp. K90mix] gi|288944738|gb|ADC72437.1| GTP-binding protein Era [Thioalkalivibrio sp. K90mix] Length = 303 Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 63/118 (53%), Gaps = 1/118 (0%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGK+TL NRLV +K+A P TR+R+ G ++DT GI + Sbjct: 14 VALVGRPNVGKTTLMNRLVGEKLAATTRRPHTTRNRILGIVTEGDDQIVLMDTPGIDTER 73 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + + +N A+ +A L+ FL+++ D I +R+ P ++V NK+D Sbjct: 74 TRLVNRVLNRTASQALADADLVCFLVEA-GRFGEGDERIEQLIRQSERPALLVINKVD 130 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 44/162 (27%), Positives = 81/162 (50%), Gaps = 6/162 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGM-RKP 264 +A+VGRPNVGK+TL+NRL+G T + TR+ + + I + DT G+ + Sbjct: 14 VALVGRPNVGKTTLMNRLVGEKLAATTRRPHTTRNRILGIVTEGDDQIVLMDTPGIDTER 73 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 +R+ + +T + Q++ + L++A F + D RI + + +L +NK Sbjct: 74 TRLVNRVLNRT---ASQALADADLVCFLVEAG-RFGEGDERIEQLIRQSERPALLVINKV 129 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDD 366 D +K LL + + ++ +P G + ++ +G GL D Sbjct: 130 DRAREKEELLPFIAGR-MEAMPYAGVVPLSAKTGSNVAGLID 170 >gi|294791925|ref|ZP_06757073.1| GTP-binding protein Era [Veillonella sp. 6_1_27] gi|294457155|gb|EFG25517.1| GTP-binding protein Era [Veillonella sp. 6_1_27] Length = 307 Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 50/171 (29%), Positives = 82/171 (47%), Gaps = 9/171 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTL N L+ K+A+V + TR+R+ +DT G+ K Sbjct: 20 VAVVGRPNVGKSTLINALIGDKIAIVSDKAQTTRNRIICVYTDEAKQIVFMDTPGVHKPK 79 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + + M D ++ E +LF++ P D+ I L++ +P+ +V NK+DT Sbjct: 80 H-KLGEFMVDAAIESLKETEAVLFVVAGNEKRGPGDNFIIEQLKRVKVPVFLVVNKIDTL 138 Query: 125 IAQRNFYEIYSLD----FKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHP 171 + I S F ++ ISA+ SE I K+ ++ P P Sbjct: 139 KKEELLEAIVSYQDAYPFAGVIPISAKDKENLSE----ILKVLEESLPEGP 185 Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 59/120 (49%), Gaps = 3/120 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +AVVGRPNVGKSTLIN L+G + ++ TR+ + + + I DT G+ KP Sbjct: 20 VAVVGRPNVGKSTLINALIGDKIAIVSDKAQTTRNRIICVYTDEAKQIVFMDTPGVHKPK 79 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + V +++S++ E + ++ D I++ + V L +NK D Sbjct: 80 H---KLGEFMVDAAIESLKETEAVLFVVAGNEKRGPGDNFIIEQLKRVKVPVFLVVNKID 136 >gi|170719011|ref|YP_001784171.1| GTP-binding protein Era [Haemophilus somnus 2336] gi|189037650|sp|B0USS2|ERA_HAES2 RecName: Full=GTPase Era gi|168827140|gb|ACA32511.1| GTP-binding protein Era [Haemophilus somnus 2336] Length = 304 Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 52/186 (27%), Positives = 90/186 (48%), Gaps = 26/186 (13%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYG---QAIINGVIFNIVDTAGIA 61 IAIVG PNVGKSTL N+++ +K+++ TR R+ G + + V VDT G+ Sbjct: 15 IAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIHTEGVYQAV---YVDTPGLH 71 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 + +I + MN AI + LI+F++D D + + LR+ P+++ NK+ Sbjct: 72 IEEKRAINRLMNRAASSAIGDVDLIIFVVDG-THWNDDDEMVLNKLRRAKAPVVLAINKV 130 Query: 122 D------------TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPN 169 D T ++Q+ L+FKEI+ ISA+ L ++ ++ + Sbjct: 131 DNIKNKDELLPFITDVSQK-------LEFKEIIPISAQRGNNIHNLEKIVRTSLRKGVHH 183 Query: 170 HPLEMI 175 P + + Sbjct: 184 FPEDYV 189 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 39/130 (30%), Positives = 64/130 (49%), Gaps = 5/130 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMR-KP 264 IA+VGRPNVGKSTL+N++LG +T ++ TR + + DT G+ + Sbjct: 15 IAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIHTEGVYQAVYVDTPGLHIEE 74 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 R L + ++ V + I ++D T + D +++ + VVLA+NK Sbjct: 75 KRAINRLMNRAASSAIGDV---DLIIFVVDGT-HWNDDDEMVLNKLRRAKAPVVLAINKV 130 Query: 325 DMVSDKLNLL 334 D + +K LL Sbjct: 131 DNIKNKDELL 140 >gi|331269998|ref|YP_004396490.1| GTP-binding protein Era [Clostridium botulinum BKT015925] gi|329126548|gb|AEB76493.1| GTP-binding protein Era [Clostridium botulinum BKT015925] Length = 294 Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 53/178 (29%), Positives = 95/178 (53%), Gaps = 11/178 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIV--DTAGIAD 62 I+I+G PNVGKSTL N ++ +K+++V P TR+ + +AI+ + +V DT GI Sbjct: 7 ISIIGRPNVGKSTLINEILGEKLSIVSCRPQTTRNNI--RAILTKEDYQLVFLDTPGIHK 64 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 ++ + + M E + +E LI+F+ ++ I D I ++ N P+ ++ NK+D Sbjct: 65 PRH-KLGEYMVKAAESSKDEVDLIVFITTPQSEIGKGDELILENIKNSNKPVFLIVNKID 123 Query: 123 TR----IAQR-NFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 +A+ Y Y ++FKEI+ ISA+ + L ++ K + +P +MI Sbjct: 124 ENPPELVAETLKKYSEY-MEFKEIIPISAQKNKNVDTLLDLMIKYMPEGPKYYPDDMI 180 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 3/120 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 I+++GRPNVGKSTLIN +LG + + TR+++ +++ + DT G+ KP Sbjct: 7 ISIIGRPNVGKSTLINEILGEKLSIVSCRPQTTRNNIRAILTKEDYQLVFLDTPGIHKPR 66 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + VK + S + + + K D I++++ N+ V L +NK D Sbjct: 67 H---KLGEYMVKAAESSKDEVDLIVFITTPQSEIGKGDELILENIKNSNKPVFLIVNKID 123 >gi|121598239|ref|YP_994136.1| tRNA modification GTPase TrmE [Burkholderia mallei SAVP1] gi|124384367|ref|YP_001028207.1| tRNA modification GTPase TrmE [Burkholderia mallei NCTC 10229] gi|126449818|ref|YP_001083053.1| tRNA modification GTPase TrmE [Burkholderia mallei NCTC 10247] gi|238563702|ref|ZP_00438440.2| tRNA modification GTPase TrmE [Burkholderia mallei GB8 horse 4] gi|251767367|ref|ZP_04820085.1| tRNA modification GTPase TrmE [Burkholderia mallei PRL-20] gi|254175200|ref|ZP_04881861.1| tRNA modification GTPase TrmE [Burkholderia mallei ATCC 10399] gi|254201961|ref|ZP_04908325.1| tRNA modification GTPase TrmE [Burkholderia mallei FMH] gi|254207294|ref|ZP_04913645.1| tRNA modification GTPase TrmE [Burkholderia mallei JHU] gi|254359603|ref|ZP_04975874.1| tRNA modification GTPase TrmE [Burkholderia mallei 2002721280] gi|121227049|gb|ABM49567.1| tRNA modification GTPase TrmE [Burkholderia mallei SAVP1] gi|124292387|gb|ABN01656.1| tRNA modification GTPase TrmE [Burkholderia mallei NCTC 10229] gi|126242688|gb|ABO05781.1| tRNA modification GTPase TrmE [Burkholderia mallei NCTC 10247] gi|147747855|gb|EDK54931.1| tRNA modification GTPase TrmE [Burkholderia mallei FMH] gi|147752836|gb|EDK59902.1| tRNA modification GTPase TrmE [Burkholderia mallei JHU] gi|148028817|gb|EDK86749.1| tRNA modification GTPase TrmE [Burkholderia mallei 2002721280] gi|160696245|gb|EDP86215.1| tRNA modification GTPase TrmE [Burkholderia mallei ATCC 10399] gi|238520163|gb|EEP83625.1| tRNA modification GTPase TrmE [Burkholderia mallei GB8 horse 4] gi|243063001|gb|EES45187.1| tRNA modification GTPase TrmE [Burkholderia mallei PRL-20] Length = 488 Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 40/119 (33%), Positives = 69/119 (57%), Gaps = 2/119 (1%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 ++ + G PNVGKS+L N L ++A+V G TRD++ I G+ +I+DTAG+ + Sbjct: 249 SVVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQIEGIPLHIIDTAGLRET 308 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 ++ + K +T I A ++L L+D+++G+ P D AI + +P++ V NK D Sbjct: 309 ED-EVEKIGIARTWGEIERADVVLHLLDARSGLGPGDEAIAARF-PDGVPVVRVLNKTD 365 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 50/188 (26%), Positives = 90/188 (47%), Gaps = 11/188 (5%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + L + + G+PNVGKS+L+N L G + +G TRD V+ + + P+ I DTA Sbjct: 244 LREGLSVVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQIEGIPLHIIDTA 303 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R+ + +E+ + ++ + + + LLDA D I + F G VV Sbjct: 304 GLRETE---DEVEKIGIARTWGEIERADVVLHLLDARSGLGPGDEAIA-ARFPDGVPVVR 359 Query: 320 ALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWK 379 LNK D+ ++ + A ++ ++ +S + G+G+D L +L I W+ Sbjct: 360 VLNKTDLTGAPASVTRTGGGAARADVCEV------RLSAKRGDGIDLLRGELLRIAG-WQ 412 Query: 380 TRITTSYL 387 + YL Sbjct: 413 AGAESVYL 420 >gi|300814730|ref|ZP_07094978.1| tRNA modification GTPase TrmE [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511117|gb|EFK38369.1| tRNA modification GTPase TrmE [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 459 Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 46/158 (29%), Positives = 86/158 (54%), Gaps = 13/158 (8%) Query: 179 KRNEE---SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQS 235 +RN+E + +E + + G+ + + + + ++G+PNVGKS+L+N +L Y R + Sbjct: 196 RRNDEITLNIRELLNNAGRGKL--LREGINTLILGKPNVGKSSLLNGMLKYERAIVTDIP 253 Query: 236 GITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDA 295 G TRD++ N +++ DTAG+R+ + +E+ VK + ++ + IV+ D Sbjct: 254 GTTRDTIEDYINLDGLLLKVTDTAGIRQTD---DEVEKIGVKIARDKIKEADLVIVIFDL 310 Query: 296 TIPFEKQDLRIVDSVFNTGHAVVLALNKWDM---VSDK 330 + PF K D I+D + N + +NK D+ VSD+ Sbjct: 311 SRPFNKDDREILDLIQN--KKALFIMNKDDLQARVSDE 346 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/135 (28%), Positives = 66/135 (48%), Gaps = 17/135 (12%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 I+G PNVGKS+L N ++K + A+V + PG TRD + ++G++ + DTAGI Sbjct: 226 ILGKPNVGKSSLLNGMLKYERAIVTDIPGTTRDTIEDYINLDGLLLKVTDTAGI------ 279 Query: 67 SIAKQMNDQTEL--------AINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVS 118 +Q +D+ E I EA L++ + D D I ++ K I+ Sbjct: 280 ---RQTDDEVEKIGVKIARDKIKEADLVIVIFDLSRPFNKDDREILDLIQNKKALFIMNK 336 Query: 119 NKMDTRIAQRNFYEI 133 + + R++ + E+ Sbjct: 337 DDLQARVSDEDIKEL 351 >gi|33152641|ref|NP_873994.1| GTP-binding protein Era [Haemophilus ducreyi 35000HP] gi|71151872|sp|Q7VL76|ERA_HAEDU RecName: Full=GTPase Era gi|33148865|gb|AAP96383.1| GTP-binding protein era-like protein [Haemophilus ducreyi 35000HP] Length = 304 Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 53/177 (29%), Positives = 88/177 (49%), Gaps = 8/177 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N+++ +K+++ TR R+ G VDT G+ + Sbjct: 15 IAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIQTEEQYQAIYVDTPGLHIEE 74 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN AI + LI+F+++ T D + + LR P+++ NK+D Sbjct: 75 KRAINRLMNRAASSAIGDVDLIIFVVEG-TKWTDDDEMVLNKLRTAKAPVVLAINKVDN- 132 Query: 125 IAQRN--FYEIYSL----DFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 I +++ I +L DF EI+ ISA+ L ++ K ++ + P E + Sbjct: 133 IKEKDELLPHITALSQKFDFAEILPISAQRGKNVHILQKIVRKSLREGVHHFPEEYV 189 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 65/130 (50%), Gaps = 5/130 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMR-KP 264 IA+VGRPNVGKSTL+N++LG +T ++ TR + + + DT G+ + Sbjct: 15 IAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIQTEEQYQAIYVDTPGLHIEE 74 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 R L + ++ V + I +++ T + D +++ + VVLA+NK Sbjct: 75 KRAINRLMNRAASSAIGDV---DLIIFVVEGT-KWTDDDEMVLNKLRTAKAPVVLAINKV 130 Query: 325 DMVSDKLNLL 334 D + +K LL Sbjct: 131 DNIKEKDELL 140 >gi|194246696|ref|YP_002004335.1| GTP-binding protein Era [Candidatus Phytoplasma mali] gi|193807053|emb|CAP18489.1| Glycyl-tRNA synthetase [Candidatus Phytoplasma mali] Length = 293 Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 57/184 (30%), Positives = 100/184 (54%), Gaps = 12/184 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQA--IINGVIFNIVDTAGIAD 62 I I+G PNVGKSTL N LVK+K+++V + P +T +++ G I + ++F +DT G + Sbjct: 8 ITILGRPNVGKSTLINVLVKQKISIVSDKPNVTINKIIGVCNDIDSQLVF--IDTPGFNN 65 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 K ++K+M++ + +I +ILFLI + + I S ++K PIIIV NK+D Sbjct: 66 RKFL-LSKRMDESSLKSIYGVDVILFLITD--ILNSSEKKILSNIQKHKKPIIIVINKID 122 Query: 123 -----TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 ++I + + F +I+ ISA + L + I K+ +P +M+ + Sbjct: 123 NFKNKSQIDKIILDCLKYFKFDDIIPISAINSQNLLPLKNSILSYLKEGPKYYPSDMVTD 182 Query: 178 NKRN 181 K++ Sbjct: 183 QKKD 186 Score = 36.6 bits (83), Expect = 9.2, Method: Compositional matrix adjust. Identities = 29/125 (23%), Positives = 59/125 (47%), Gaps = 5/125 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 I ++GRPNVGKSTLIN L+ + + +T + + N + + DT G Sbjct: 8 ITILGRPNVGKSTLINVLVKQKISIVSDKPNVTINKIIGVCNDIDSQLVFIDTPGFNNRK 67 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + L ++ + S++S+ + + L+ T + +I+ ++ +++ +NK D Sbjct: 68 FL---LSKRMDESSLKSIYGVDVILFLI--TDILNSSEKKILSNIQKHKKPIIIVINKID 122 Query: 326 MVSDK 330 +K Sbjct: 123 NFKNK 127 >gi|78485080|ref|YP_391005.1| GTP-binding protein Era [Thiomicrospira crunogena XCL-2] gi|78363366|gb|ABB41331.1| GTP-binding protein Era [Thiomicrospira crunogena XCL-2] Length = 314 Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 43/162 (26%), Positives = 79/162 (48%), Gaps = 6/162 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A++G PNVGKST+ N L+ +K+++ P TR R++G VDT G+ G Sbjct: 22 VAVIGRPNVGKSTIMNGLLGQKLSITSPKPQTTRHRIHGIHTTEHFQIVFVDTPGMHLGA 81 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + SI + MN A + ILF++++ + D A+ + +P+I++ NK+D Sbjct: 82 SKSINRYMNRAANSAFGDVDAILFVVEA-GRWSKEDQAVADKCQNLEVPVIVLVNKIDKF 140 Query: 125 IAQRNFYEIYS-----LDFKEIVEISAEHDLGTSELHSVIFK 161 + + + F+ ++ +SA G + + I K Sbjct: 141 KKKEELFPFLQKVGEKVPFEALIPVSAYTKSGFDAIEAEILK 182 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 78/167 (46%), Gaps = 7/167 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +AV+GRPNVGKST++N LLG +T + TR + ++ I DT GM + Sbjct: 22 VAVIGRPNVGKSTIMNGLLGQKLSITSPKPQTTRHRIHGIHTTEHFQIVFVDTPGMHLGA 81 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 ++S+ + + + + + + +++A + K+D + D N V++ +NK D Sbjct: 82 --SKSINRYMNRAANSAFGDVDAILFVVEAG-RWSKEDQAVADKCQNLEVPVIVLVNKID 138 Query: 326 MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVL 372 K L L+ K + +P I +S T G D + +L Sbjct: 139 KFKKKEELFPFLQ-KVGEKVPFEALI---PVSAYTKSGFDAIEAEIL 181 >gi|42783426|ref|NP_980673.1| GTP-binding protein Era [Bacillus cereus ATCC 10987] gi|49481311|ref|YP_038355.1| GTP-binding protein Era [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52141202|ref|YP_085626.1| GTP-binding protein Era [Bacillus cereus E33L] gi|118479469|ref|YP_896620.1| GTP-binding protein Era [Bacillus thuringiensis str. Al Hakam] gi|196034381|ref|ZP_03101790.1| GTP-binding protein Era [Bacillus cereus W] gi|196039186|ref|ZP_03106492.1| GTP-binding protein Era [Bacillus cereus NVH0597-99] gi|196046320|ref|ZP_03113546.1| GTP-binding protein Era [Bacillus cereus 03BB108] gi|206978417|ref|ZP_03239286.1| GTP-binding protein Era [Bacillus cereus H3081.97] gi|217961790|ref|YP_002340360.1| GTP-binding protein Era [Bacillus cereus AH187] gi|218905437|ref|YP_002453271.1| GTP-binding protein Era [Bacillus cereus AH820] gi|222097745|ref|YP_002531802.1| gtp-binding protein era [Bacillus cereus Q1] gi|225866281|ref|YP_002751659.1| GTP-binding protein Era [Bacillus cereus 03BB102] gi|254721891|ref|ZP_05183680.1| GTP-binding protein Era [Bacillus anthracis str. A1055] gi|301055792|ref|YP_003794003.1| GTP-binding protein [Bacillus anthracis CI] gi|42739355|gb|AAS43281.1| GTP-binding protein Era [Bacillus cereus ATCC 10987] gi|49332867|gb|AAT63513.1| GTP-binding protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51974671|gb|AAU16221.1| GTP-binding protein [Bacillus cereus E33L] gi|118418694|gb|ABK87113.1| GTP-binding protein [Bacillus thuringiensis str. Al Hakam] gi|195992923|gb|EDX56882.1| GTP-binding protein Era [Bacillus cereus W] gi|196022790|gb|EDX61471.1| GTP-binding protein Era [Bacillus cereus 03BB108] gi|196029813|gb|EDX68414.1| GTP-binding protein Era [Bacillus cereus NVH0597-99] gi|206743373|gb|EDZ54811.1| GTP-binding protein Era [Bacillus cereus H3081.97] gi|217063790|gb|ACJ78040.1| GTP-binding protein Era [Bacillus cereus AH187] gi|218535830|gb|ACK88228.1| GTP-binding protein Era [Bacillus cereus AH820] gi|221241803|gb|ACM14513.1| GTP-binding protein [Bacillus cereus Q1] gi|225786790|gb|ACO27007.1| GTP-binding protein Era [Bacillus cereus 03BB102] gi|300377961|gb|ADK06865.1| GTP-binding protein [Bacillus cereus biovar anthracis str. CI] gi|324328204|gb|ADY23464.1| GTPase Era [Bacillus thuringiensis serovar finitimus YBT-020] Length = 301 Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 44/147 (29%), Positives = 77/147 (52%), Gaps = 7/147 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 ++I+G PNVGKST NR++ +K+A++ + P TR+++ G N +DT GI K Sbjct: 11 VSIIGRPNVGKSTFLNRIIGQKIAIMSDKPQTTRNKIQGVYTENDSQVIFIDTPGIHKPK 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + M + + E ++LF++++ G + I L++ P+ +V NK+D + Sbjct: 71 H-KLGDFMVKMAQTTLKEVDIVLFMVNAVEGFGRGEEFIIEKLKETKQPVFLVINKID-Q 128 Query: 125 IAQRNFYEIYSL-----DFKEIVEISA 146 + E+ DF EIV ISA Sbjct: 129 VHPEQLLELIDQYRKLHDFAEIVPISA 155 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/122 (26%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 ++++GRPNVGKST +NR++G + + TR+ + + + + DT G+ KP Sbjct: 11 VSIIGRPNVGKSTFLNRIIGQKIAIMSDKPQTTRNKIQGVYTENDSQVIFIDTPGIHKPK 70 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L VK + +++ + + +++A F + + I++ + T V L +NK D Sbjct: 71 H---KLGDFMVKMAQTTLKEVDIVLFMVNAVEGFGRGEEFIIEKLKETKQPVFLVINKID 127 Query: 326 MV 327 V Sbjct: 128 QV 129 >gi|322420694|ref|YP_004199917.1| GTP-binding protein Era [Geobacter sp. M18] gi|320127081|gb|ADW14641.1| GTP-binding protein Era [Geobacter sp. M18] Length = 297 Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 51/167 (30%), Positives = 83/167 (49%), Gaps = 9/167 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 ++IVG PNVGKSTL NR++ +K+ + + P TR+++ G + G +DT GI K Sbjct: 11 VSIVGRPNVGKSTLLNRILGEKLMITSDKPQTTRNQIKGIHNVPGGQIVFLDTPGIHRAK 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD-- 122 + K M ++ ++ LILFL+D I L + P+I+V NK+D Sbjct: 71 -TRLNKFMVEEALSSVQGVDLILFLVDGAFDPEKEAEMIKEVLSGVDAPVILVLNKIDLI 129 Query: 123 ---TRIAQRNFY-EIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQ 165 + + Y E Y FKEI+ +SA G +L ++ + + Sbjct: 130 PKGELLGRMAIYGETYP--FKEIIPVSASTGDGVDQLVQLVHGLLPE 174 Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 48/167 (28%), Positives = 83/167 (49%), Gaps = 16/167 (9%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +++VGRPNVGKSTL+NR+LG ++T + TR+ + N I DT G+ Sbjct: 11 VSIVGRPNVGKSTLLNRILGEKLMITSDKPQTTRNQIKGIHNVPGGQIVFLDTPGIH--- 67 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 R L + V++++ SV+ + + L+D EK+ I + + V+L LNK D Sbjct: 68 RAKTRLNKFMVEEALSSVQGVDLILFLVDGAFDPEKEAEMIKEVLSGVDAPVILVLNKID 127 Query: 326 MVSDKLNLLQDLRTKAIKNLPQIGDIY----INTISGRTGEGLDDLM 368 ++ + + + + G+ Y I +S TG+G+D L+ Sbjct: 128 LIP---------KGELLGRMAIYGETYPFKEIIPVSASTGDGVDQLV 165 >gi|307128609|ref|YP_003880639.1| tRNA modification GTPase TrmE [Candidatus Sulcia muelleri CARI] gi|306483071|gb|ADM89941.1| tRNA modification GTPase TrmE [Candidatus Sulcia muelleri CARI] Length = 454 Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 35/89 (39%), Positives = 57/89 (64%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 +++I+G PNVGKSTLFN+L+K + ++V N G TR+ + IING+ + +DTAGI + Sbjct: 223 SVSIIGCPNVGKSTLFNKLLKYERSIVSNMAGTTRNYIEDSLIINGIKYRFIDTAGINNK 282 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDS 92 I K +T I ++ +IL++ D+ Sbjct: 283 TKNYIEKLGIKKTYSNIKKSDIILYVFDN 311 Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 26/91 (28%), Positives = 50/91 (54%), Gaps = 2/91 (2%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 + ++++G PNVGKSTL N+LL Y R + + +G TR+ + S DTAG+ Sbjct: 222 ISVSIIGCPNVGKSTLFNKLLKYERSIVSNMAGTTRNYIEDSLIINGIKYRFIDTAGINN 281 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLD 294 ++ +E+ +KK+ +++ + + + D Sbjct: 282 KTK--NYIEKLGIKKTYSNIKKSDIILYVFD 310 >gi|254428300|ref|ZP_05042007.1| GTP-binding protein Era [Alcanivorax sp. DG881] gi|196194469|gb|EDX89428.1| GTP-binding protein Era [Alcanivorax sp. DG881] Length = 292 Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 67/119 (56%), Gaps = 2/119 (1%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 ++IVG PNVGKSTL N L+ +K+++ P TR R++G + DT GI G+ Sbjct: 2 VSIVGRPNVGKSTLMNHLIGQKVSITSRKPQTTRHRIHGILSRDNYQIIFADTPGIHTGQ 61 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKN-IPIIIVSNKMD 122 ++ + MN+ + +I ++D+ TP D + S L +K+ +P++++ NK+D Sbjct: 62 EKALNRAMNEAAVSTLFGVDVICMMVDAMKW-TPADEHVLSLLPEKDQVPVLLIINKVD 119 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 40/139 (28%), Positives = 71/139 (51%), Gaps = 12/139 (8%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +++VGRPNVGKSTL+N L+G +T + TR + + N+ I DT G+ Sbjct: 2 VSIVGRPNVGKSTLMNHLIGQKVSITSRKPQTTRHRIHGILSRDNYQIIFADTPGIHTGQ 61 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDAT--IPFEKQDLRIV---DSVFNTGHAVVLA 320 ++L + + ++ ++ + +++DA P ++ L ++ D V V+L Sbjct: 62 E--KALNRAMNEAAVSTLFGVDVICMMVDAMKWTPADEHVLSLLPEKDQV-----PVLLI 114 Query: 321 LNKWDMVSDKLNLLQDLRT 339 +NK D V DK LL ++T Sbjct: 115 INKVDNVDDKAALLPHIQT 133 >gi|113461382|ref|YP_719451.1| GTP-binding protein Era [Haemophilus somnus 129PT] gi|122945400|sp|Q0I4Z4|ERA_HAES1 RecName: Full=GTPase Era gi|112823425|gb|ABI25514.1| GTP-binding protein era [Haemophilus somnus 129PT] Length = 300 Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 52/186 (27%), Positives = 90/186 (48%), Gaps = 26/186 (13%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYG---QAIINGVIFNIVDTAGIA 61 IAIVG PNVGKSTL N+++ +K+++ TR R+ G + + V VDT G+ Sbjct: 11 IAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIHTEGVYQAV---YVDTPGLH 67 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 + +I + MN AI + LI+F++D D + + LR+ P+++ NK+ Sbjct: 68 IEEKRAINRLMNRAASSAIGDVDLIIFVVDG-THWNDDDEMVLNKLRRAKAPVVLAINKV 126 Query: 122 D------------TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPN 169 D T ++Q+ L+FKEI+ ISA+ L ++ ++ + Sbjct: 127 DNIKNKDELLPFITDVSQK-------LEFKEIIPISAQRGNNIHNLEKIVRTSLRKGVHH 179 Query: 170 HPLEMI 175 P + + Sbjct: 180 FPEDYV 185 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 39/130 (30%), Positives = 64/130 (49%), Gaps = 5/130 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMR-KP 264 IA+VGRPNVGKSTL+N++LG +T ++ TR + + DT G+ + Sbjct: 11 IAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIHTEGVYQAVYVDTPGLHIEE 70 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 R L + ++ V + I ++D T + D +++ + VVLA+NK Sbjct: 71 KRAINRLMNRAASSAIGDV---DLIIFVVDGT-HWNDDDEMVLNKLRRAKAPVVLAINKV 126 Query: 325 DMVSDKLNLL 334 D + +K LL Sbjct: 127 DNIKNKDELL 136 >gi|303251583|ref|ZP_07337757.1| GTP-binding protein Era [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307252104|ref|ZP_07534003.1| GTP-binding protein era [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302649581|gb|EFL79763.1| GTP-binding protein Era [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306860404|gb|EFM92418.1| GTP-binding protein era [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 304 Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 53/177 (29%), Positives = 88/177 (49%), Gaps = 8/177 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N+++ +K+++ TR R+ G + VDT G+ + Sbjct: 15 IAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIHTEDQYQAIYVDTPGLHIEE 74 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN AI + LI+F+++ T D + + LR P+++ NK+D Sbjct: 75 KRAINRLMNRAASSAIGDVDLIIFVVEG-TKWTDDDEMVLNKLRSAKAPVVLAINKVDN- 132 Query: 125 IAQRN--FYEIYSL----DFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 I +++ I L DF EI+ ISA+ L ++ K ++ + P E + Sbjct: 133 IKEKDELLPHITELSPKFDFAEILPISAQRGKNVHILQKIVRKSLREGGHHFPEEYV 189 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 65/130 (50%), Gaps = 5/130 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMR-KP 264 IA+VGRPNVGKSTL+N++LG +T ++ TR + + DT G+ + Sbjct: 15 IAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIHTEDQYQAIYVDTPGLHIEE 74 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 R L + ++ V + I +++ T + D +++ + + VVLA+NK Sbjct: 75 KRAINRLMNRAASSAIGDV---DLIIFVVEGT-KWTDDDEMVLNKLRSAKAPVVLAINKV 130 Query: 325 DMVSDKLNLL 334 D + +K LL Sbjct: 131 DNIKEKDELL 140 >gi|189502543|ref|YP_001958260.1| hypothetical protein Aasi_1201 [Candidatus Amoebophilus asiaticus 5a2] gi|226704778|sp|B3ETH9|MNME_AMOA5 RecName: Full=tRNA modification GTPase mnmE gi|189497984|gb|ACE06531.1| hypothetical protein Aasi_1201 [Candidatus Amoebophilus asiaticus 5a2] Length = 455 Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 55/179 (30%), Positives = 94/179 (52%), Gaps = 6/179 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N L++++ A+V PG TRD + + I G+ +DTAG+ + Sbjct: 222 IAIVGKPNVGKSTLLNALLQEERAIVSPIPGTTRDFIEAEINIGGIHCRFIDTAGLREHT 281 Query: 65 NCSIAKQMNDQTELAINEAHLILFLID-SKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 +I +T+ + +A LI+++ D S + +AI + + IP I V NK+D Sbjct: 282 TDTIESIGIARTKERMQQAGLIIYVFDLSDESLATIQNAIEG-ISELGIPYIKVGNKLDA 340 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 AQ + + +L ++ V IS +L + I ++F+ ++ ++ N + E Sbjct: 341 --AQPDLLK--ALSQEDFVFISTAKKQHLGQLEARILELFQLDQLDNSDTIVVNTRHYE 395 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/100 (34%), Positives = 54/100 (54%), Gaps = 3/100 (3%) Query: 196 SVKNISK-PLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIE 254 S+ N+ K L IA+VG+PNVGKSTL+N LL R + G TRD + N Sbjct: 211 SLGNVIKNGLPIAIVGKPNVGKSTLLNALLQEERAIVSPIPGTTRDFIEAEINIGGIHCR 270 Query: 255 IFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLD 294 DTAG+R+ + T+++E + ++ + ++ I + D Sbjct: 271 FIDTAGLREHT--TDTIESIGIARTKERMQQAGLIIYVFD 308 >gi|307110642|gb|EFN58878.1| hypothetical protein CHLNCDRAFT_19706 [Chlorella variabilis] Length = 477 Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 39/104 (37%), Positives = 59/104 (56%), Gaps = 3/104 (2%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 L++A+VGRPNVGKS+L+N L G R + +G TRD V PI + DTAG+R+ Sbjct: 243 LQVALVGRPNVGKSSLLNALSGTERAIVTHIAGTTRDIVEAGVVIGGIPITLLDTAGLRE 302 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIV 307 + +EQ V++SM + R + +++LDA + D I Sbjct: 303 S---VDLVEQIGVERSMAAARQADIVLMVLDAQAGWTPGDAEIA 343 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 35/102 (34%), Positives = 63/102 (61%), Gaps = 3/102 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKS+L N L + A+V + G TRD + +I G+ ++DTAG+ + Sbjct: 245 VALVGRPNVGKSSLLNALSGTERAIVTHIAGTTRDIVEAGVVIGGIPITLLDTAGLRE-- 302 Query: 65 NCSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITS 105 + + +Q+ +++ A +A ++L ++D++AG TP D I + Sbjct: 303 SVDLVEQIGVERSMAAARQADIVLMVLDAQAGWTPGDAEIAA 344 >gi|299144155|ref|ZP_07037235.1| GTP-binding protein Era [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518640|gb|EFI42379.1| GTP-binding protein Era [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 296 Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 53/159 (33%), Positives = 87/159 (54%), Gaps = 15/159 (9%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDR---LYGQAIINGVIFNIVDTAGIA 61 + I+G PNVGKSTL N +V +K++ + N TR++ +Y + VIF +DT GI Sbjct: 7 VTIIGRPNVGKSTLLNCIVGQKISAISNKAQTTRNKITFIYTDEKMQ-VIF--LDTPGIQ 63 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNI--PIIIVSN 119 KN + M +E ++E +I +++D I D+ I L++KN+ PI+++ N Sbjct: 64 MPKN-KLGDYMLKVSESTLSEVDVITYIVDCSKKIGKLDNYIIKELKEKNLKTPIVLLVN 122 Query: 120 KMDTRIAQRNFYEIYSLD-----FKEIVEISAEHDLGTS 153 K+D +A+ +EI + FKEI+ ISA + G Sbjct: 123 KID-EVAKEELFEIIKMYDDIGIFKEIIPISALKNDGVE 160 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 61/125 (48%), Gaps = 5/125 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 + ++GRPNVGKSTL+N ++G +++ TR+ ++ + + + DT G++ P Sbjct: 7 VTIIGRPNVGKSTLLNCIVGQKISAISNKAQTTRNKITFIYTDEKMQVIFLDTPGIQMPK 66 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSV--FNTGHAVVLALNK 323 L +K S ++ + ++D + K D I+ + N +VL +NK Sbjct: 67 N---KLGDYMLKVSESTLSEVDVITYIVDCSKKIGKLDNYIIKELKEKNLKTPIVLLVNK 123 Query: 324 WDMVS 328 D V+ Sbjct: 124 IDEVA 128 >gi|297565483|ref|YP_003684455.1| GTP-binding protein Era [Meiothermus silvanus DSM 9946] gi|296849932|gb|ADH62947.1| GTP-binding protein Era [Meiothermus silvanus DSM 9946] Length = 297 Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 52/186 (27%), Positives = 89/186 (47%), Gaps = 8/186 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N L+ K+A + P TR R+ G VDT G+ + + Sbjct: 11 VAIVGKPNVGKSTLLNALLGVKVAPISPKPQTTRKRIRGIYSEGNRQIVFVDTPGVHEPE 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRK-KNIPIIIVSNKMDT 123 + + M+ Q A+ + + +++++D + T D + L+ +N+PI++V NK+D Sbjct: 71 DA-LGDYMSQQVAEALADVNAVVWVVDLRHPPTREDELVARMLQPIQNVPILLVGNKLDA 129 Query: 124 RIAQRNFYEIYS--LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 + + Y L E +SA + L + + P P E R+ Sbjct: 130 AKRPEDAMQEYRSLLHQAEPRMLSALDERAVKNLRDELLAML----PEGPFFYPEVFSRS 185 Query: 182 EESPKE 187 ++SP+E Sbjct: 186 DQSPEE 191 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 40/170 (23%), Positives = 82/170 (48%), Gaps = 12/170 (7%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VG+PNVGKSTL+N LLG + TR + ++ N I DT G+ +P Sbjct: 11 VAIVGKPNVGKSTLLNALLGVKVAPISPKPQTTRKRIRGIYSEGNRQIVFVDTPGVHEPE 70 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD---LRIVDSVFNTGHAVVLALN 322 ++L ++ +++ + ++D P ++D R++ + N ++L N Sbjct: 71 ---DALGDYMSQQVAEALADVNAVVWVVDLRHPPTREDELVARMLQPIQNV--PILLVGN 125 Query: 323 KWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVL 372 K D + +Q+ R+ + P++ ++ + R + L D ++++L Sbjct: 126 KLDAAKRPEDAMQEYRSLLHQAEPRM----LSALDERAVKNLRDELLAML 171 >gi|160914941|ref|ZP_02077155.1| hypothetical protein EUBDOL_00949 [Eubacterium dolichum DSM 3991] gi|158433481|gb|EDP11770.1| hypothetical protein EUBDOL_00949 [Eubacterium dolichum DSM 3991] Length = 442 Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 41/120 (34%), Positives = 72/120 (60%), Gaps = 5/120 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+++ A+V + G TRD + G+ ++G+ +++DTAGI + ++ Sbjct: 223 AIIGKPNVGKSSLLNALLEEDKAIVTDIAGTTRDIVEGRIHLSGLTLHLIDTAGIRETED 282 Query: 66 CSIAKQMNDQTEL-AINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +Q+ Q + AI EA L++ ++D I D + + + K I+V NK D + Sbjct: 283 --VVEQIGIQRSIKAIEEAQLVIVVLDGSREIDAEDEKLLALAKDKT--HIVVYNKSDLK 338 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 36/127 (28%), Positives = 73/127 (57%), Gaps = 5/127 (3%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + ++ A++G+PNVGKS+L+N LL ++ + +G TRD V + + + DTA Sbjct: 216 LKEGIKTAIIGKPNVGKSSLLNALLEEDKAIVTDIAGTTRDIVEGRIHLSGLTLHLIDTA 275 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R+ + +EQ +++S++++ + IV+LD + + +D +++ + H VV Sbjct: 276 GIRETEDV---VEQIGIQRSIKAIEEAQLVIVVLDGSREIDAEDEKLLALAKDKTHIVV- 331 Query: 320 ALNKWDM 326 NK D+ Sbjct: 332 -YNKSDL 337 >gi|146300457|ref|YP_001195048.1| tRNA modification GTPase TrmE [Flavobacterium johnsoniae UW101] gi|205829142|sp|A5FGE0|MNME_FLAJO RecName: Full=tRNA modification GTPase mnmE gi|146154875|gb|ABQ05729.1| tRNA modification GTPase TrmE [Flavobacterium johnsoniae UW101] Length = 466 Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 44/122 (36%), Positives = 70/122 (57%), Gaps = 5/122 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N L+ ++ A+V + G TRD + + +I G+ F +DTAGI + K Sbjct: 224 VAIVGEPNVGKSTLLNALLNEERAIVSDIAGTTRDTIEDELVIGGIGFRFIDTAGIRETK 283 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDS---KAGITPYDHAITSFLRKKNI-PIIIVSNK 120 + + + E I++A ++++L D KA + + I K + P++IV NK Sbjct: 284 DVVESIGIKKTFE-KIDQAQVVIYLFDGLKFKASSSEFVSEIEQIKNKYPLKPLLIVVNK 342 Query: 121 MD 122 D Sbjct: 343 KD 344 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/140 (29%), Positives = 69/140 (49%), Gaps = 11/140 (7%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VG PNVGKSTL+N LL R + +G TRD++ DTAG+R+ Sbjct: 224 VAIVGEPNVGKSTLLNALLNEERAIVSDIAGTTRDTIEDELVIGGIGFRFIDTAGIRETK 283 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHA-----VVLA 320 + ES+ +KK+ + + + I L D + F+ V + + +++ Sbjct: 284 DVVESI---GIKKTFEKIDQAQVVIYLFDG-LKFKASSSEFVSEIEQIKNKYPLKPLLIV 339 Query: 321 LNKWDMVSDK--LNLLQDLR 338 +NK D++S+ LN+ Q L Sbjct: 340 VNKKDILSEDEVLNITQKLE 359 >gi|46577356|sp|Q7MVZ2|MNME_PORGI RecName: Full=tRNA modification GTPase mnmE Length = 474 Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 88/172 (51%), Gaps = 13/172 (7%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + + +A+VG NVGKSTL+N LLG R + G TRD++ + + + DTA Sbjct: 224 VKRGIPVAIVGTTNVGKSTLLNTLLGEERAIVSDIHGTTRDTIEDTMHIGGYLFRFVDTA 283 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFN--TGHAV 317 G+R+ ESL +++S ++ + + ++D T E L + S+++ + Sbjct: 284 GLRETEDTIESL---GIERSRSKIKEADIILAVVDGTRISEANQLDYIKSIWDEREERTL 340 Query: 318 VLALNKWDMV--SDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDL 367 +L +NK + + +D++ L + L+TK I IS R G G+D+L Sbjct: 341 ILLVNKSESLAEADRIGLSETLQTKLSTPTKPI------FISAREGRGIDEL 386 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/88 (38%), Positives = 53/88 (60%), Gaps = 1/88 (1%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG NVGKSTL N L+ ++ A+V + G TRD + I G +F VDTAG+ + + Sbjct: 230 VAIVGTTNVGKSTLLNTLLGEERAIVSDIHGTTRDTIEDTMHIGGYLFRFVDTAGLRETE 289 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDS 92 + +I +++ I EA +IL ++D Sbjct: 290 D-TIESLGIERSRSKIKEADIILAVVDG 316 >gi|186477840|ref|YP_001859310.1| tRNA modification GTPase TrmE [Burkholderia phymatum STM815] gi|184194299|gb|ACC72264.1| tRNA modification GTPase TrmE [Burkholderia phymatum STM815] Length = 466 Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 46/161 (28%), Positives = 88/161 (54%), Gaps = 4/161 (2%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 ++ + G PNVGKS+L N L ++A+V G TRD++ + G+ +++DTAG+ + Sbjct: 228 SVVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHVIDTAGLRET 287 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 ++ + K ++T I A ++L L+D+++G+T D AI + +P++ V NK D Sbjct: 288 ED-EVEKIGIERTWGEIERADVVLHLLDARSGMTDDDEAIAARF-PAGVPVVRVLNKTDL 345 Query: 124 RIAQRNFYEIYSLDFKEIVEI--SAEHDLGTSELHSVIFKI 162 A + ++ + ++ E+ SA+ G S L + +I Sbjct: 346 TGAAPHVEKLNASGEPDLCEVRLSAKMGDGISLLRGELLRI 386 Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 49/188 (26%), Positives = 90/188 (47%), Gaps = 12/188 (6%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + L + + G+PNVGKS+L+N L G + +G TRD V+ + + P+ + DTA Sbjct: 223 LREGLSVVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHVIDTA 282 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R+ + +E+ ++++ + + + LLDA D I + F G VV Sbjct: 283 GLRETE---DEVEKIGIERTWGEIERADVVLHLLDARSGMTDDDEAIA-ARFPAGVPVVR 338 Query: 320 ALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWK 379 LNK D+ + ++ L +L ++ +S + G+G+ L +L I W+ Sbjct: 339 VLNKTDLTGAAPH-VEKLNASGEPDLCEV------RLSAKMGDGISLLRGELLRIAG-WQ 390 Query: 380 TRITTSYL 387 + YL Sbjct: 391 AGAESVYL 398 >gi|282881766|ref|ZP_06290424.1| tRNA modification GTPase TrmE [Peptoniphilus lacrimalis 315-B] gi|281298376|gb|EFA90814.1| tRNA modification GTPase TrmE [Peptoniphilus lacrimalis 315-B] Length = 459 Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 41/126 (32%), Positives = 70/126 (55%), Gaps = 8/126 (6%) Query: 208 VVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRI 267 ++G+PNVGKS+L+N +L Y R + G TRD++ N +++ DTAG+R+ Sbjct: 226 ILGKPNVGKSSLLNGMLKYERAIVTDIPGTTRDTIEDYINLDGLLLKVTDTAGIRQTD-- 283 Query: 268 TESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM- 326 + +E+ VK + ++ + IV+ D + PF K D I+D + N + +NK D+ Sbjct: 284 -DEVEKIGVKIARDKIKDADLVIVIFDLSRPFNKDDREILDLIQN--KKALFIMNKDDLQ 340 Query: 327 --VSDK 330 VSD+ Sbjct: 341 ARVSDE 346 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/135 (26%), Positives = 66/135 (48%), Gaps = 17/135 (12%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 I+G PNVGKS+L N ++K + A+V + PG TRD + ++G++ + DTAGI Sbjct: 226 ILGKPNVGKSSLLNGMLKYERAIVTDIPGTTRDTIEDYINLDGLLLKVTDTAGI------ 279 Query: 67 SIAKQMNDQTEL--------AINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVS 118 +Q +D+ E I +A L++ + D D I ++ K I+ Sbjct: 280 ---RQTDDEVEKIGVKIARDKIKDADLVIVIFDLSRPFNKDDREILDLIQNKKALFIMNK 336 Query: 119 NKMDTRIAQRNFYEI 133 + + R++ + ++ Sbjct: 337 DDLQARVSDEDIKDL 351 >gi|268318299|ref|YP_003292018.1| tRNA modification GTPase TrmE [Rhodothermus marinus DSM 4252] gi|262335833|gb|ACY49630.1| tRNA modification GTPase TrmE [Rhodothermus marinus DSM 4252] Length = 462 Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 43/120 (35%), Positives = 68/120 (56%), Gaps = 3/120 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + I G PN GKSTL N L+ + A+V PG TRD++ +A I G+ F VDTAG+ Sbjct: 223 VVIGGRPNAGKSTLLNALLGQDRAIVSPVPGTTRDQIEAEAEIEGLRFRFVDTAGLRATA 282 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKN--IPIIIVSNKMD 122 + I + + + AI A +++++ D G+ P + A + LR + +P+I+V NK D Sbjct: 283 D-EIEAEGVRRAQQAIAAAEVLVYVFDLTVGLAPDEQAYLTRLRTEQPALPVIVVGNKRD 341 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 30/94 (31%), Positives = 51/94 (54%), Gaps = 3/94 (3%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 +R+ + GRPN GKSTL+N LLG +R + G TRD + + DTAG+R Sbjct: 221 VRVVIGGRPNAGKSTLLNALLGQDRAIVSPVPGTTRDQIEAEAEIEGLRFRFVDTAGLRA 280 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATI 297 + + +E + V+++ Q++ E + + D T+ Sbjct: 281 TA---DEIEAEGVRRAQQAIAAAEVLVYVFDLTV 311 >gi|171316351|ref|ZP_02905571.1| tRNA modification GTPase TrmE [Burkholderia ambifaria MEX-5] gi|171098480|gb|EDT43282.1| tRNA modification GTPase TrmE [Burkholderia ambifaria MEX-5] Length = 464 Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 49/188 (26%), Positives = 89/188 (47%), Gaps = 14/188 (7%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + L + + G+PNVGKS+L+N L G + +G TRD V+ + + P+ I DTA Sbjct: 223 LREGLSVVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTA 282 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R+ + +E+ + ++ + + + LLD+ +D ++ + F G VV Sbjct: 283 GLRETE---DEVERIGIARTWSEIERADVVLHLLDSRTGMTAED-EVIAARFPGGVPVVR 338 Query: 320 ALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWK 379 LNK D+ +++ GD+ +S + G+G+D L +L I W+ Sbjct: 339 VLNKTDLTG---------VPACVEHPSAEGDLTEVHLSAKRGDGIDMLRAELLRIAG-WQ 388 Query: 380 TRITTSYL 387 YL Sbjct: 389 AGAEGVYL 396 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 39/123 (31%), Positives = 68/123 (55%), Gaps = 10/123 (8%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 ++ + G PNVGKS+L N L ++A+V G TRD++ + G+ +I+DTAG+ + Sbjct: 228 SVVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRET 287 Query: 64 KN----CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 ++ IA+ ++ I A ++L L+DS+ G+T D I + +P++ V N Sbjct: 288 EDEVERIGIARTWSE-----IERADVVLHLLDSRTGMTAEDEVIAARF-PGGVPVVRVLN 341 Query: 120 KMD 122 K D Sbjct: 342 KTD 344 >gi|34540645|ref|NP_905124.1| tRNA modification GTPase TrmE [Porphyromonas gingivalis W83] gi|34396959|gb|AAQ66023.1| thiophene and furan oxidation protein ThdF [Porphyromonas gingivalis W83] Length = 518 Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 50/179 (27%), Positives = 91/179 (50%), Gaps = 13/179 (7%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + + +A+VG NVGKSTL+N LLG R + G TRD++ + + + DTA Sbjct: 268 VKRGIPVAIVGTTNVGKSTLLNTLLGEERAIVSDIHGTTRDTIEDTMHIGGYLFRFVDTA 327 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFN--TGHAV 317 G+R+ ESL +++S ++ + + ++D T E L + S+++ + Sbjct: 328 GLRETEDTIESL---GIERSRSKIKEADIILAVVDGTRISEANQLDYIKSIWDEREERTL 384 Query: 318 VLALNKWDMV--SDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEI 374 +L +NK + + +D++ L + L+TK I IS R G G+D+L + +I Sbjct: 385 ILLVNKSESLAEADRIGLSETLQTKLSTPTKPI------FISAREGRGIDELKGELTQI 437 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 55/192 (28%), Positives = 96/192 (50%), Gaps = 13/192 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG NVGKSTL N L+ ++ A+V + G TRD + I G +F VDTAG+ + + Sbjct: 274 VAIVGTTNVGKSTLLNTLLGEERAIVSDIHGTTRDTIEDTMHIGGYLFRFVDTAGLRETE 333 Query: 65 NCSIAKQMNDQTELAINEAHLILFLID----SKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + +I +++ I EA +IL ++D S+A Y +I + ++ +I++ NK Sbjct: 334 D-TIESLGIERSRSKIKEADIILAVVDGTRISEANQLDYIKSI--WDEREERTLILLVNK 390 Query: 121 MDT-----RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 ++ RI + + + ISA G EL + +I + N ++I Sbjct: 391 SESLAEADRIGLSETLQTKLSTPTKPIFISAREGRGIDELKGELTQIMETSGANEA-DLI 449 Query: 176 ENNKRNEESPKE 187 +N R+ + +E Sbjct: 450 VSNARHHQLLRE 461 >gi|83594953|ref|YP_428705.1| tRNA modification GTPase TrmE [Rhodospirillum rubrum ATCC 11170] gi|123525454|sp|Q2RN77|MNME_RHORT RecName: Full=tRNA modification GTPase mnmE gi|83577867|gb|ABC24418.1| tRNA modification GTPase trmE [Rhodospirillum rubrum ATCC 11170] Length = 455 Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 50/174 (28%), Positives = 90/174 (51%), Gaps = 20/174 (11%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 + + L++AVVG PNVGKS+L+NRL + +G TRD V ++ + +P+ + D Sbjct: 223 ERLRDGLQVAVVGAPNVGKSSLVNRLARREAAIVSDIAGTTRDIVEVALDLGGYPLVVAD 282 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ S + +E + V+++ + + T+ + D T+ D + TG AV Sbjct: 283 TAGLRETS---DGIEAEGVRRARARLAAADLTLAVSDGTVENGADD----PAADLTGEAV 335 Query: 318 VLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSV 371 + + K D+ L +A++ G + ++T+ TGEGLD L ++ Sbjct: 336 LRVVTKRDL----------LDPRAVERWLARGALPVSTL---TGEGLDALEAAL 376 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 37/56 (66%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 +A+VGAPNVGKS+L NRL +++ A+V + G TRD + + G + DTAG+ Sbjct: 231 VAVVGAPNVGKSSLVNRLARREAAIVSDIAGTTRDIVEVALDLGGYPLVVADTAGL 286 >gi|332992354|gb|AEF02409.1| GTPase Era [Alteromonas sp. SN2] Length = 303 Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 45/163 (27%), Positives = 81/163 (49%), Gaps = 8/163 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL NRL+ +K+++ P TR R+ G VDT G+ + Sbjct: 13 VAIVGRPNVGKSTLLNRLLGQKVSITSRKPQTTRHRILGIDTEGDYQAIYVDTPGLHSEE 72 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 ++ + MN ++ E L+LF+I+ D + S ++ +P ++ NKMD + Sbjct: 73 KSAMNRYMNRAASSSLAEVGLVLFVIEGTR-WNDDDEMVLSKVKASGLPCYLIVNKMD-K 130 Query: 125 IAQRNFYEIY------SLDFKEIVEISAEHDLGTSELHSVIFK 161 + + + ++ F+ I+ ISA+ ++ ++ K Sbjct: 131 VDDKEAFMVHLQGLSEKYKFEHIIPISAKQGKMVDDIRELVAK 173 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 43/162 (26%), Positives = 77/162 (47%), Gaps = 7/162 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VGRPNVGKSTL+NRLLG +T + TR + ++ DT G+ Sbjct: 13 VAIVGRPNVGKSTLLNRLLGQKVSITSRKPQTTRHRILGIDTEGDYQAIYVDTPGLHSEE 72 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + ++ + + + S+ + +++ T + D ++ V +G L +NK D Sbjct: 73 K--SAMNRYMNRAASSSLAEVGLVLFVIEGT-RWNDDDEMVLSKVKASGLPCYLIVNKMD 129 Query: 326 MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDL 367 V DK + L+ + K + +I IS + G+ +DD+ Sbjct: 130 KVDDKEAFMVHLQGLSEKYKFE----HIIPISAKQGKMVDDI 167 >gi|241890023|ref|ZP_04777321.1| GTP-binding protein Era [Gemella haemolysans ATCC 10379] gi|241863645|gb|EER68029.1| GTP-binding protein Era [Gemella haemolysans ATCC 10379] Length = 302 Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 52/193 (26%), Positives = 93/193 (48%), Gaps = 13/193 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + I+G PN GKSTL N ++K+K+A++ + P TR+ + G N +DT GI K Sbjct: 11 VTIIGRPNAGKSTLLNNILKQKIAIMSDKPQTTRNIINGVYTDNDSQIVFIDTPGIHKPK 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + M AI E+ ++ +I++ P D + + +++ +P ++ NK+D Sbjct: 71 H-RLGDYMMKLASSAIQESEIVYLIINASEKFGPGDQHLINIVKELKVPTFLLINKIDL- 128 Query: 125 IAQRNFYEIYSL-----DFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNK 179 I+ +I DF EIV ISA + L + K + + +P ++I + Sbjct: 129 ISPEQLIQIIEFYKDLYDFVEIVPISALKSINVDNLLNTTKKYLQPSFKMYPDDVITD-- 186 Query: 180 RNEESPKENITSE 192 SP+ + SE Sbjct: 187 ----SPEYFVISE 195 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 31/123 (25%), Positives = 60/123 (48%), Gaps = 3/123 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 + ++GRPN GKSTL+N +L + + TR+ ++ + + I DT G+ KP Sbjct: 11 VTIIGRPNAGKSTLLNNILKQKIAIMSDKPQTTRNIINGVYTDNDSQIVFIDTPGIHKPK 70 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L +K + +++ E ++++A+ F D +++ V L +NK D Sbjct: 71 H---RLGDYMMKLASSAIQESEIVYLIINASEKFGPGDQHLINIVKELKVPTFLLINKID 127 Query: 326 MVS 328 ++S Sbjct: 128 LIS 130 >gi|254582943|ref|XP_002499203.1| ZYRO0E06446p [Zygosaccharomyces rouxii] gi|238942777|emb|CAR30948.1| ZYRO0E06446p [Zygosaccharomyces rouxii] Length = 506 Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 47/176 (26%), Positives = 97/176 (55%), Gaps = 13/176 (7%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 +++ ++G PN GKS+LIN + + + G TRD+V S + + + I DTAG+R Sbjct: 250 VKVVLLGPPNAGKSSLINSISNDDVSIISHTPGTTRDTVEASIDVNGYKVTISDTAGIRS 309 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLD-ATIPFEKQDL-RIVDSVFNTGHAVVLAL 321 S ++ +E ++++++ C+ ++++D P +DL +++ S++ G V+ + Sbjct: 310 HS--SDEIELLGIERAIKKSEQCDLCLLIVDPLNKPLINEDLTQMIQSMYKEGKEFVIIV 367 Query: 322 NKWDMVSDK---LNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEI 374 NK D+++D+ +++ LR K P I T+S +T EG++ L+ + +I Sbjct: 368 NKQDLLTDENQSKSVMDALREKFGDKFPII------TVSCKTQEGIEPLVKQLTQI 417 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 33/56 (58%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 + ++G PN GKS+L N + ++++ + PG TRD + +NG I DTAGI Sbjct: 252 VVLLGPPNAGKSSLINSISNDDVSIISHTPGTTRDTVEASIDVNGYKVTISDTAGI 307 >gi|167999799|ref|XP_001752604.1| predicted protein [Physcomitrella patens subsp. patens] gi|162696135|gb|EDQ82475.1| predicted protein [Physcomitrella patens subsp. patens] Length = 481 Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 54/184 (29%), Positives = 85/184 (46%), Gaps = 28/184 (15%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKS+L N + + A+V + PG TRD + + ++ G+ N++DTAGI D Sbjct: 222 VAIVGRPNVGKSSLLNAWSQSERAIVTDIPGTTRDIVEARMVVGGIAVNLLDTAGIRDTA 281 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAI-------TSFLRKK------- 110 + + K +++E A +I+ +I + G TP D I LR++ Sbjct: 282 DL-VEKIGVERSEAVAKAADVIVMVISASDGWTPADEIIFQRIWGTDGILRQRKEQTGGE 340 Query: 111 ----------NIPIIIVSNKMDTRIAQRNFY--EIYSLDFKEIVEISAEHDLGTSELHSV 158 P ++V NK+D A E+ + FK V A +G EL Sbjct: 341 CEDQPGSGSVQTPSLLVVNKVDRAAAGSVILPQEVQNAFFKR-VATCATQGVGLQELDFA 399 Query: 159 IFKI 162 I + Sbjct: 400 ILDL 403 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 3/114 (2%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + L++A+VGRPNVGKS+L+N R + G TRD V + + DTA Sbjct: 216 LQSGLQVAIVGRPNVGKSSLLNAWSQSERAIVTDIPGTTRDIVEARMVVGGIAVNLLDTA 275 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNT 313 G+R + + E + V++S + + ++++ A+ + D I ++ T Sbjct: 276 GIRDTADLVEKI---GVERSEAVAKAADVIVMVISASDGWTPADEIIFQRIWGT 326 >gi|70727675|ref|YP_254591.1| tRNA modification GTPase TrmE [Staphylococcus haemolyticus JCSC1435] gi|82582308|sp|Q4L2Z2|MNME_STAHJ RecName: Full=tRNA modification GTPase mnmE gi|68448401|dbj|BAE05985.1| possible thiophene and furan oxidation protein [Staphylococcus haemolyticus JCSC1435] Length = 459 Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 43/116 (37%), Positives = 67/116 (57%), Gaps = 3/116 (2%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PNVGKS++ N L++ A+V G TRD L + GV +VDTAGI D ++ Sbjct: 226 IVGKPNVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRDTEDI 285 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + K +++ A++EA LILF++++ +T D + + KN I++ NK D Sbjct: 286 -VEKIGVERSRKALSEADLILFVLNNNEPLTQEDRTLYEVI--KNEDAIVIVNKTD 338 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 52/187 (27%), Positives = 95/187 (50%), Gaps = 14/187 (7%) Query: 188 NITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWN 247 N+ E + K + + L +VG+PNVGKS+++N L+ N+ + +G TRD + N Sbjct: 206 NLLLETGAQGKIMREGLSTVIVGKPNVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVN 265 Query: 248 WKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIV 307 + P+ + DTAG+R I E + V++S +++ + + +L+ P ++D R + Sbjct: 266 VRGVPLRLVDTAGIRDTEDIVEKI---GVERSRKALSEADLILFVLNNNEPLTQED-RTL 321 Query: 308 DSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDL 367 V A+V+ +NK D L Q+L +K + IGD + S EG+D L Sbjct: 322 YEVIKNEDAIVI-VNKTD-------LEQNLDINEVKEM--IGDTPLIQTSMLKQEGIDQL 371 Query: 368 MVSVLEI 374 + + ++ Sbjct: 372 ELQIRDL 378 >gi|302391411|ref|YP_003827231.1| GTP-binding protein Era [Acetohalobium arabaticum DSM 5501] gi|302203488|gb|ADL12166.1| GTP-binding protein Era [Acetohalobium arabaticum DSM 5501] Length = 306 Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 48/176 (27%), Positives = 87/176 (49%), Gaps = 7/176 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + ++G PNVGKSTL N L+ +K+A+ TR++L + +DT G+ K Sbjct: 18 VTVIGQPNVGKSTLINHLIGQKIAITTPKKQTTRNKLQCILTRDNAQLIFIDTPGVHRPK 77 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + + M D A+ + LI F++D++ GIT + I + L P IIV NK+D Sbjct: 78 D-KMGEYMVDTAYKALKKVELIYFMVDAQKGITDLERKINNQLSGIQTPTIIVLNKIDL- 135 Query: 125 IAQRNFYEIYSL-----DFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 +++ ++ D+ E++ +SAE T+ L ++ +P +M+ Sbjct: 136 VSKAKLKDVIESCRRLGDYAELIPVSAETGENTNTLIDKSIELLPDGPKYYPEDMV 191 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 84/171 (49%), Gaps = 12/171 (7%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 + V+G+PNVGKSTLIN L+G +T + TR+ + N + DT G+ +P Sbjct: 18 VTVIGQPNVGKSTLINHLIGQKIAITTPKKQTTRNKLQCILTRDNAQLIFIDTPGVHRPK 77 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + + + V + ++++ E ++DA + +I + + ++ LNK D Sbjct: 78 ---DKMGEYMVDTAYKALKKVELIYFMVDAQKGITDLERKINNQLSGIQTPTIIVLNKID 134 Query: 326 MVSDKLNLLQDLRTKAIKNLPQIGDIYINTI--SGRTGEGLDDLMVSVLEI 374 +VS L+D+ I++ ++GD Y I S TGE + L+ +E+ Sbjct: 135 LVSKA--KLKDV----IESCRRLGD-YAELIPVSAETGENTNTLIDKSIEL 178 >gi|328958785|ref|YP_004376171.1| tRNA modification GTPase MnmE [Carnobacterium sp. 17-4] gi|328675109|gb|AEB31155.1| tRNA modification GTPase MnmE [Carnobacterium sp. 17-4] Length = 462 Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 43/144 (29%), Positives = 81/144 (56%), Gaps = 6/144 (4%) Query: 192 EGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNH 251 E S K + L A++GRPNVGKS+L+N LL + + +G TRD + + K Sbjct: 213 ETASQGKILRDGLATAIIGRPNVGKSSLLNYLLDEEKAIVTDIAGTTRDVIEEYISVKGV 272 Query: 252 PIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVF 311 P+++ DTAG+R+ I E + V++S Q++ + +++ + + P +D ++++ Sbjct: 273 PLKLVDTAGIRETEDIIERI---GVERSRQALSDADLVLLVFNQSEPLTIEDKALIEA-- 327 Query: 312 NTGHAVVLALNKWDMVSDKLNLLQ 335 + H ++ LNK D+ +KL+L + Sbjct: 328 TSQHHRIIILNKMDL-PNKLDLTE 350 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/117 (34%), Positives = 68/117 (58%), Gaps = 3/117 (2%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+ ++ A+V + G TRD + + GV +VDTAGI + ++ Sbjct: 228 AIIGRPNVGKSSLLNYLLDEEKAIVTDIAGTTRDVIEEYISVKGVPLKLVDTAGIRETED 287 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 I + +++ A+++A L+L + + +T D A+ + + II+ NKMD Sbjct: 288 I-IERIGVERSRQALSDADLVLLVFNQSEPLTIEDKALIEATSQHH--RIIILNKMD 341 >gi|94992362|ref|YP_600461.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase [Streptococcus pyogenes MGAS2096] gi|94545870|gb|ABF35917.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase [Streptococcus pyogenes MGAS2096] Length = 261 Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 45/147 (30%), Positives = 86/147 (58%), Gaps = 6/147 (4%) Query: 180 RNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITR 239 +N ++ EN+ K K + + L A++GRPNVGKS+L+N LL ++ + +G TR Sbjct: 5 KNSKALLENLLRTAKRG-KILREGLSTAIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTR 63 Query: 240 DSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPF 299 D + N K P+++ DTAG+R+ + +EQ V++S ++++ + +++L+A+ Sbjct: 64 DVIEEYVNIKGVPLKLVDTAGIRETDDL---VEQIGVERSKKALQEADLVLLVLNASEKL 120 Query: 300 EKQDLRIVDSVFNTGHAVVLALNKWDM 326 QD R + ++ + ++L LNK D+ Sbjct: 121 TDQD-RALLNLSQDSNRIIL-LNKTDL 145 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 42/121 (34%), Positives = 72/121 (59%), Gaps = 5/121 (4%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + AI+G PNVGKS+L N L+++ A+V + G TRD + I GV +VDTAGI + Sbjct: 28 LSTAIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPLKLVDTAGIRE 87 Query: 63 GKNCSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 + + +Q+ ++++ A+ EA L+L ++++ +T D A+ + + N II+ NK Sbjct: 88 TDD--LVEQIGVERSKKALQEADLVLLVLNASEKLTDQDRALLNLSQDSN--RIILLNKT 143 Query: 122 D 122 D Sbjct: 144 D 144 >gi|15925702|ref|NP_373236.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus Mu50] gi|156981027|ref|YP_001443286.1| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus Mu3] gi|255007483|ref|ZP_05146084.2| tRNA modification GTPase TrmE [Staphylococcus aureus subsp. aureus Mu50-omega] gi|21363015|sp|Q931E1|MNME_STAAM RecName: Full=tRNA modification GTPase mnmE gi|166234822|sp|A7X7A8|MNME_STAA1 RecName: Full=tRNA modification GTPase mnmE gi|14248487|dbj|BAB58874.1| tRNA modification GTPase trmE [Staphylococcus aureus subsp. aureus Mu50] gi|156723162|dbj|BAF79579.1| possible thiophene and furan oxidation protein [Staphylococcus aureus subsp. aureus Mu3] Length = 459 Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 41/116 (35%), Positives = 69/116 (59%), Gaps = 3/116 (2%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PNVGKS++ N L++ A+V G TRD L + V +VDTAGI + ++ Sbjct: 226 IVGKPNVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRSVPLRLVDTAGIRETEDI 285 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + K +++ A+++A LILF++++ +T D+ + + KN +I++ NKMD Sbjct: 286 -VEKIGVERSRKALSQADLILFVLNNNEALTQEDYTLYEVV--KNEDVIVIVNKMD 338 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 47/177 (26%), Positives = 94/177 (53%), Gaps = 14/177 (7%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L +VG+PNVGKS+++N L+ N+ + +G TRD + N ++ P+ + D Sbjct: 216 KIMREGLSTVIVGKPNVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRSVPLRLVD 275 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ I E + V++S +++ + + +L+ ++D + + V N V Sbjct: 276 TAGIRETEDIVEKI---GVERSRKALSQADLILFVLNNNEALTQEDYTLYEVVKN--EDV 330 Query: 318 VLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEI 374 ++ +NK D L Q++ +K++ IGD + S EG+D+L + + ++ Sbjct: 331 IVIVNKMD-------LEQNIDINEVKDM--IGDTPLIQTSMLKQEGIDELEIQIRDL 378 >gi|332360300|gb|EGJ38113.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis SK355] Length = 457 Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 46/137 (33%), Positives = 83/137 (60%), Gaps = 7/137 (5%) Query: 207 AVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSR 266 A++GRPNVGKS+L+N LL ++ + G TRD + N K P+++ DTAG+R+ Sbjct: 227 AIIGRPNVGKSSLLNNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDD 286 Query: 267 ITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 + +EQ V++S ++++ + +++L+A+ QD ++++ + + +VL LNK D+ Sbjct: 287 L---VEQIGVERSKKALQEADLVLLVLNASEQLTDQDRQLLE-ISQDSNRIVL-LNKTDL 341 Query: 327 VSDKLNLLQDLRTKAIK 343 +K+ L Q L T IK Sbjct: 342 -EEKIELDQ-LPTDVIK 356 Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 69/118 (58%), Gaps = 5/118 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+++ A+V + G TRD + I GV ++DTAGI + + Sbjct: 227 AIIGRPNVGKSSLLNNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDD 286 Query: 66 CSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + +Q+ ++++ A+ EA L+L ++++ +T D + + N I++ NK D Sbjct: 287 --LVEQIGVERSKKALQEADLVLLVLNASEQLTDQDRQLLEISQDSN--RIVLLNKTD 340 >gi|313678189|ref|YP_004055929.1| tRNA modification GTPase TrmE [Mycoplasma bovis PG45] gi|312950578|gb|ADR25173.1| tRNA modification GTPase TrmE [Mycoplasma bovis PG45] Length = 445 Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 54/204 (26%), Positives = 100/204 (49%), Gaps = 21/204 (10%) Query: 186 KENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSIS 245 K N T E + + I + ++IA++G+PNVGKS+++N +L ++ + +G TRD V Sbjct: 201 KINQTIELSQTSRMIFEGIKIAILGKPNVGKSSILNSILEEDKAIVTDIAGTTRDIVEAM 260 Query: 246 WNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLR 305 W +K + DTAG+R+ E +E+ + KS + + + + + D + ++ D + Sbjct: 261 WQYKGLLFKFVDTAGIRETK---EKIEKIGIDKSFEQIDKADVVLHIYDPSQKNDEFDEQ 317 Query: 306 IVDSVFNTGHAVVLALNKWDM----------VSDKLNLLQDLRTKAI---KNLPQIGDIY 352 I + + +NK D+ VS K N L +L+ K + KN+ D Y Sbjct: 318 IKSKALSLNKVYIPVINKKDLVKNIDDNLLYVSAKQNDLDELKEKLVSVFKNVDLNNDQY 377 Query: 353 IN-----TISGRTGEGLDDLMVSV 371 +N + + + LDD + S+ Sbjct: 378 VNNSRQLALIKQAQKSLDDALNSI 401 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 41/114 (35%), Positives = 63/114 (55%), Gaps = 4/114 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAI+G PNVGKS++ N ++++ A+V + G TRD + G++F VDTAGI + K Sbjct: 221 IAILGKPNVGKSSILNSILEEDKAIVTDIAGTTRDIVEAMWQYKGLLFKFVDTAGIRETK 280 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITS---FLRKKNIPII 115 I K D++ I++A ++L + D +D I S L K IP+I Sbjct: 281 E-KIEKIGIDKSFEQIDKADVVLHIYDPSQKNDEFDEQIKSKALSLNKVYIPVI 333 >gi|315223060|ref|ZP_07864939.1| GTP-binding protein Era [Streptococcus anginosus F0211] gi|315188010|gb|EFU21746.1| GTP-binding protein Era [Streptococcus anginosus F0211] Length = 299 Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 48/179 (26%), Positives = 89/179 (49%), Gaps = 7/179 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKST N ++ +K+A++ + TR+++ G + +DT GI K Sbjct: 8 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDQEQIVFIDTPGIHKPK 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD-- 122 ++ M + + E +LF++ + D I L+ +P+I+V NK+D Sbjct: 68 -TALGDFMVESAYSTLREVDTVLFMVSADENRGKGDDMIMERLKAAKVPVILVVNKIDKV 126 Query: 123 ---TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 ++Q + Y +DFKE+V ISA S L ++ + ++ + P + I ++ Sbjct: 127 HPNQLLSQIDDYR-KQMDFKEVVPISALQGNNVSHLVDILSENLEEGFQYFPADQITDH 184 Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKST +N ++G + ++ TR+ + + I DT G+ KP Sbjct: 8 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDQEQIVFIDTPGIHKPK 67 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +L V+ + ++R +T + ++ A K D I++ + V+L +NK D Sbjct: 68 ---TALGDFMVESAYSTLREVDTVLFMVSADENRGKGDDMIMERLKAAKVPVILVVNKID 124 Query: 326 MV 327 V Sbjct: 125 KV 126 >gi|260881589|ref|ZP_05404771.2| GTP-binding protein Era [Mitsuokella multacida DSM 20544] gi|260848446|gb|EEX68453.1| GTP-binding protein Era [Mitsuokella multacida DSM 20544] Length = 323 Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 51/179 (28%), Positives = 89/179 (49%), Gaps = 7/179 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA++G PNVGKSTL N L+ +K+A++ + P T++R+ +DT GI K Sbjct: 34 IAVIGRPNVGKSTLINTLIGQKIAIMSDKPQTTQNRILCILTEPDAQIVFLDTPGIHKPK 93 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + + M E + E ILF++D+ + P ++ I L+ + P+I+V NK+D Sbjct: 94 H-KLGEYMVKAAEGTLKEVDAILFVVDATEKMGPGEYYILERLQATSKPVILVVNKLDL- 151 Query: 125 IAQRNFYEIYS-----LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 I + I S F +V ISA+ + L + + K + +P +M+ + Sbjct: 152 IEKEQVLPIISRYADKYPFVGVVPISAKAETNLDSLLTEVKKYLPEGPQYYPEDMVTDQ 210 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 49/166 (29%), Positives = 82/166 (49%), Gaps = 8/166 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IAV+GRPNVGKSTLIN L+G + + T++ + + I DT G+ KP Sbjct: 34 IAVIGRPNVGKSTLINTLIGQKIAIMSDKPQTTQNRILCILTEPDAQIVFLDTPGIHKPK 93 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + VK + +++ + + ++DAT + I++ + T V+L +NK D Sbjct: 94 H---KLGEYMVKAAEGTLKEVDAILFVVDATEKMGPGEYYILERLQATSKPVILVVNKLD 150 Query: 326 MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSV 371 ++ +K +L + A K P +G + IS + LD L+ V Sbjct: 151 LI-EKEQVLPIISRYADK-YPFVG---VVPISAKAETNLDSLLTEV 191 >gi|332300821|ref|YP_004442742.1| tRNA modification GTPase mnmE [Porphyromonas asaccharolytica DSM 20707] gi|332177884|gb|AEE13574.1| tRNA modification GTPase mnmE [Porphyromonas asaccharolytica DSM 20707] Length = 470 Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 35/86 (40%), Positives = 58/86 (67%), Gaps = 3/86 (3%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+GAPNVGKS+L N L++ + A+V + PG TRD + G+ I G +F ++DTAG+ + Sbjct: 220 AIIGAPNVGKSSLLNALLQHERAIVSDIPGTTRDTVEGRLTIRGTLFRLIDTAGLR--QT 277 Query: 66 CSIAKQMN-DQTELAINEAHLILFLI 90 + +Q+ +++ I+ A LIL++I Sbjct: 278 TDLVEQLGIERSYQQISSARLILWVI 303 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 38/140 (27%), Positives = 75/140 (53%), Gaps = 8/140 (5%) Query: 195 SSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIE 254 S+ + + + + A++G PNVGKS+L+N LL + R + G TRD+V + Sbjct: 208 STGQELQQGIPTAIIGAPNVGKSSLLNALLQHERAIVSDIPGTTRDTVEGRLTIRGTLFR 267 Query: 255 IFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP----FEKQDLRIVDSV 310 + DTAG+R+ T+ +EQ +++S Q + + + ++ +P E Q L + + Sbjct: 268 LIDTAGLRQ---TTDLVEQLGIERSYQQISSARLILWVIAPPLPTWDELEAQ-LSEILRL 323 Query: 311 FNTGHAVVLALNKWDMVSDK 330 + ++L LNK D+++++ Sbjct: 324 TSPESTLMLLLNKRDLLTER 343 >gi|307566127|ref|ZP_07628585.1| tRNA modification GTPase TrmE [Prevotella amnii CRIS 21A-A] gi|307345315|gb|EFN90694.1| tRNA modification GTPase TrmE [Prevotella amnii CRIS 21A-A] Length = 447 Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 51/160 (31%), Positives = 82/160 (51%), Gaps = 14/160 (8%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 +AI+G NVGKSTL N L+ ++ A+V N G TRD + ING+ F +DTAGI Sbjct: 218 AVAIIGKTNVGKSTLLNALLGEERAIVSNIEGTTRDVIEDVTEINGISFRFIDTAGIRQT 277 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKK--NIPIIIVSNKM 121 + + K ++T +++A +++++ID Y+ ++KK P IIV NK+ Sbjct: 278 TD-EVEKLGIERTYKMLDKAQMVIWVIDDNPSRKEYED-----IKKKVGERPFIIVRNKV 331 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 DT + + +L +SA+ EL I+K Sbjct: 332 DTIVNKEALPSFITLS------VSAKEGTNIEELKQAIYK 365 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 27/95 (28%), Positives = 52/95 (54%), Gaps = 3/95 (3%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + + +A++G+ NVGKSTL+N LLG R + + G TRD + DTA Sbjct: 213 LKEGVAVAIIGKTNVGKSTLLNALLGEERAIVSNIEGTTRDVIEDVTEINGISFRFIDTA 272 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLD 294 G+R+ T+ +E+ ++++ + + + I ++D Sbjct: 273 GIRQT---TDEVEKLGIERTYKMLDKAQMVIWVID 304 >gi|89897801|ref|YP_521288.1| hypothetical protein DSY5055 [Desulfitobacterium hafniense Y51] gi|122480417|sp|Q24M98|MNME_DESHY RecName: Full=tRNA modification GTPase mnmE gi|89337249|dbj|BAE86844.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 459 Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 56/198 (28%), Positives = 99/198 (50%), Gaps = 9/198 (4%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PNVGKS+L N L+ ++ A+V + PG TRD + I G++ +VDTAG+ + ++ Sbjct: 224 IVGQPNVGKSSLLNALMGEERAIVTDIPGTTRDEIRESVTIGGILLQLVDTAGLRESEDL 283 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 + K +++ A+ +A LIL +I + + + I S + + +I++ NKMD Sbjct: 284 -VEKLGIERSWKAMEKAELILLIIQAGQELKAEELKILS---QYDQSVIVLINKMDLLAG 339 Query: 127 QRNFYEI---YSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEE 183 + E+ Y + S + +LG +L I + Q E + +N R Sbjct: 340 KERGEEVLENYPTQQGVWIPFSVKENLGFKQLEKEIKQRVYQGKAEKTKEPLLSNIRQIT 399 Query: 184 SPKENIT--SEGKSSVKN 199 + + ++ + G SVKN Sbjct: 400 ALERAVSALANGWDSVKN 417 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 37/139 (26%), Positives = 80/139 (57%), Gaps = 6/139 (4%) Query: 192 EGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNH 251 +G + + + + + +VG+PNVGKS+L+N L+G R + G TRD + S Sbjct: 208 DGSKTGRILREGMLTVIVGQPNVGKSSLLNALMGEERAIVTDIPGTTRDEIRESVTIGGI 267 Query: 252 PIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVF 311 +++ DTAG+R+ + E L +++S +++ E ++++ A + ++L+I+ S + Sbjct: 268 LLQLVDTAGLRESEDLVEKL---GIERSWKAMEKAELILLIIQAGQELKAEELKIL-SQY 323 Query: 312 NTGHAVVLALNKWDMVSDK 330 + +V++ +NK D+++ K Sbjct: 324 D--QSVIVLINKMDLLAGK 340 >gi|311069130|ref|YP_003974053.1| GTP-binding protein Era [Bacillus atrophaeus 1942] gi|310869647|gb|ADP33122.1| GTP-binding protein Era [Bacillus atrophaeus 1942] Length = 301 Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 46/146 (31%), Positives = 75/146 (51%), Gaps = 5/146 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 ++I+G PNVGKST NR++ +K+A++ + P TR+++ G +DT GI K Sbjct: 11 VSIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKVQGVLTTGTSQTIFIDTPGIHKPK 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + M + + E LILF+I+++ G D I L+ + P+ ++ NK+D Sbjct: 71 H-KLGDFMMKVAQNTLKEVDLILFMINAEEGYGKGDEFIIEKLQHTSTPVFLIVNKIDQI 129 Query: 125 IAQRNFYEI----YSLDFKEIVEISA 146 + I FKEIV ISA Sbjct: 130 HPDKLLLLIDEYRVRYPFKEIVPISA 155 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 38/132 (28%), Positives = 66/132 (50%), Gaps = 4/132 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 ++++GRPNVGKST +NR++G + + TR+ V DT G+ KP Sbjct: 11 VSIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKVQGVLTTGTSQTIFIDTPGIHKPK 70 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L +K + +++ + + +++A + K D I++ + +T V L +NK D Sbjct: 71 H---KLGDFMMKVAQNTLKEVDLILFMINAEEGYGKGDEFIIEKLQHTSTPVFLIVNKID 127 Query: 326 MVS-DKLNLLQD 336 + DKL LL D Sbjct: 128 QIHPDKLLLLID 139 >gi|209528109|ref|ZP_03276585.1| GTP-binding protein Era [Arthrospira maxima CS-328] gi|209491468|gb|EDZ91847.1| GTP-binding protein Era [Arthrospira maxima CS-328] Length = 310 Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 82/162 (50%), Gaps = 7/162 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 + ++GRPNVGKSTL+N+L+G +T + TR+ + ++ I DT G+ KP Sbjct: 21 VGIIGRPNVGKSTLMNKLVGQKIAITSPIAQTTRNRLRGILTTESAQIIFVDTPGIHKPH 80 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + VK + ++ + + + ++D+++ D IVD + +T V+L LNKWD Sbjct: 81 ---HQLGKVLVKNAKLAIASVDVLVFVVDSSVMSGGGDRYIVDLLTHTKVPVILGLNKWD 137 Query: 326 MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDL 367 + D+ + ++ + + + S TG GL+ L Sbjct: 138 LQPDQYEAID----QSYQQFAEANQWQMVKFSASTGAGLETL 175 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 44/139 (31%), Positives = 67/139 (48%), Gaps = 4/139 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + I+G PNVGKSTL N+LV +K+A+ TR+RL G VDT GI Sbjct: 21 VGIIGRPNVGKSTLMNKLVGQKIAITSPIAQTTRNRLRGILTTESAQIIFVDTPGIHK-P 79 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + K + +LAI +++F++DS D I L +P+I+ NK D Sbjct: 80 HHQLGKVLVKNAKLAIASVDVLVFVVDSSVMSGGGDRYIVDLLTHTKVPVILGLNKWDL- 138 Query: 125 IAQRNFYEIYSLDFKEIVE 143 Q + YE +++ E Sbjct: 139 --QPDQYEAIDQSYQQFAE 155 >gi|170734511|ref|YP_001766458.1| tRNA modification GTPase TrmE [Burkholderia cenocepacia MC0-3] gi|205829124|sp|B1K0Y2|MNME_BURCC RecName: Full=tRNA modification GTPase mnmE gi|169817753|gb|ACA92336.1| tRNA modification GTPase TrmE [Burkholderia cenocepacia MC0-3] Length = 464 Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 40/123 (32%), Positives = 69/123 (56%), Gaps = 10/123 (8%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 ++ + G PNVGKS+L N L ++A+V G TRD++ + G+ +I+DTAG+ + Sbjct: 228 SVVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRET 287 Query: 64 KN----CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 ++ IA+ ++ I A ++L L+DS+ G+TP D I + +P++ V N Sbjct: 288 EDEVERIGIARTWSE-----IERADVVLHLLDSRTGMTPDDETIAARF-PAGVPVVRVLN 341 Query: 120 KMD 122 K D Sbjct: 342 KTD 344 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 50/188 (26%), Positives = 87/188 (46%), Gaps = 14/188 (7%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + L + + G+PNVGKS+L+N L G + +G TRD V+ + + P+ I DTA Sbjct: 223 LREGLSVVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTA 282 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R+ + +E+ + ++ + + + LLD+ D I + F G VV Sbjct: 283 GLRETE---DEVERIGIARTWSEIERADVVLHLLDSRTGMTPDDETIA-ARFPAGVPVVR 338 Query: 320 ALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWK 379 LNK D+ +++ GD+ +S + G+G+D L +L I W+ Sbjct: 339 VLNKTDLTG---------VPACVEHPAAEGDLTEVHLSAKRGDGIDMLRAELLRIAG-WQ 388 Query: 380 TRITTSYL 387 YL Sbjct: 389 AGAEGVYL 396 >gi|331701380|ref|YP_004398339.1| GTP-binding protein Era-like-protein [Lactobacillus buchneri NRRL B-30929] gi|329128723|gb|AEB73276.1| GTP-binding protein Era-like-protein [Lactobacillus buchneri NRRL B-30929] Length = 300 Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 52/172 (30%), Positives = 86/172 (50%), Gaps = 11/172 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKST NR++ +K+A++ + P TR+++ G +DT GI + Sbjct: 11 IAIVGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKIQGVYTTKEAQIVFIDTPGIHKPQ 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N + M + A+ E +LF++++ D+ I L+ + PI ++ NK+D Sbjct: 71 N-KLGDFMMESALSALKEVDAVLFMVNATEHRGAGDNFIIDQLKNVDKPIYLLINKID-E 128 Query: 125 IAQRNFYEIY-----SLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHP 171 I+ + I +L+FK++ ISA EL + K + PN P Sbjct: 129 ISPDDIMPIIEQYKNALEFKDVYPISALQGNNVPELIDTLIK----ELPNGP 176 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 46/170 (27%), Positives = 83/170 (48%), Gaps = 11/170 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA+VGRPNVGKST +NR++G + + TR+ + + K I DT G+ KP Sbjct: 11 IAIVGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKIQGVYTTKEAQIVFIDTPGIHKPQ 70 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L ++ ++ +++ + + +++AT D I+D + N + L +NK D Sbjct: 71 N---KLGDFMMESALSALKEVDAVLFMVNATEHRGAGDNFIIDQLKNVDKPIYLLINKID 127 Query: 326 MVS--DKLNLLQDLRTKAIKNLPQIGDIY-INTISGRTGEGLDDLMVSVL 372 +S D + +++ KN + D+Y I+ + G L D ++ L Sbjct: 128 EISPDDIMPIIEQY-----KNALEFKDVYPISALQGNNVPELIDTLIKEL 172 >gi|161723129|ref|YP_443727.2| tRNA modification GTPase TrmE [Burkholderia thailandensis E264] gi|167620891|ref|ZP_02389522.1| tRNA modification GTPase TrmE [Burkholderia thailandensis Bt4] gi|205829163|sp|Q2STM2|MNME_BURTA RecName: Full=tRNA modification GTPase mnmE Length = 467 Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 69/119 (57%), Gaps = 2/119 (1%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 ++ + G PNVGKS+L N L ++A+V G TRD++ + G+ +I+DTAG+ + Sbjct: 228 SVVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRET 287 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 ++ + K +T I A ++L L+D+++G+ P D AI + +P++ V NK D Sbjct: 288 ED-EVEKIGIARTWGEIERADVVLHLLDARSGLGPDDEAIAARF-PAGVPVVRVLNKTD 344 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 53/194 (27%), Positives = 92/194 (47%), Gaps = 23/194 (11%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + L + + G+PNVGKS+L+N L G + +G TRD V+ + + P+ I DTA Sbjct: 223 LREGLSVVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTA 282 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R+ + +E+ + ++ + + + LLDA D I + F G VV Sbjct: 283 GLRETE---DEVEKIGIARTWGEIERADVVLHLLDARSGLGPDDEAIA-ARFPAGVPVVR 338 Query: 320 ALNKWDMVSDKLNLLQDLRTKAIKNLPQIG------DIYINTISGRTGEGLDDLMVSVLE 373 LNK D+ T+A ++ ++G D+ +S + G+G+D L +L Sbjct: 339 VLNKTDL------------TEAPASVARVGSGAERADLCEVRLSAKRGDGIDLLRGELLR 386 Query: 374 INKLWKTRITTSYL 387 I W+ + YL Sbjct: 387 IAG-WQAGAESVYL 399 >gi|300860627|ref|ZP_07106714.1| GTP-binding protein Era [Enterococcus faecalis TUSoD Ef11] gi|300849666|gb|EFK77416.1| GTP-binding protein Era [Enterococcus faecalis TUSoD Ef11] Length = 300 Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 50/147 (34%), Positives = 78/147 (53%), Gaps = 7/147 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL NR+V +K+A++ + TR+++ G I +DT GI K Sbjct: 10 VAIVGRPNVGKSTLLNRIVGQKIAIMSDKAQTTRNKIQGIYTIPEAQIVFIDTPGIHKPK 69 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + M + A+ E LF++ + D I L+ N P+ ++ NK+D + Sbjct: 70 H-RLGDFMVESAYNAMREVDATLFMVSADQKRGKGDGFIIERLKNNNSPVYLIINKID-K 127 Query: 125 IAQRNFYEI---YS--LDFKEIVEISA 146 + + I YS +DFKEI+ ISA Sbjct: 128 VHPDDLLSIIEDYSKQMDFKEIIPISA 154 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 49/167 (29%), Positives = 83/167 (49%), Gaps = 9/167 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VGRPNVGKSTL+NR++G + ++ TR+ + + I DT G+ KP Sbjct: 10 VAIVGRPNVGKSTLLNRIVGQKIAIMSDKAQTTRNKIQGIYTIPEAQIVFIDTPGIHKPK 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L V+ + ++R + T+ ++ A K D I++ + N V L +NK D Sbjct: 70 H---RLGDFMVESAYNAMREVDATLFMVSADQKRGKGDGFIIERLKNNNSPVYLIINKID 126 Query: 326 MV--SDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVS 370 V D L++++D + + +I I I+ G E L D++V Sbjct: 127 KVHPDDLLSIIEDYSKQM--DFKEI--IPISATEGNNFEHLMDVLVE 169 >gi|82777992|ref|YP_404341.1| GTP-binding protein Era [Shigella dysenteriae Sd197] gi|309784619|ref|ZP_07679254.1| GTP-binding protein Era [Shigella dysenteriae 1617] gi|123561860|sp|Q32CV5|ERA_SHIDS RecName: Full=GTPase Era gi|81242140|gb|ABB62850.1| GTP-binding protein [Shigella dysenteriae Sd197] gi|308927516|gb|EFP72988.1| GTP-binding protein Era [Shigella dysenteriae 1617] Length = 301 Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 50/178 (28%), Positives = 87/178 (48%), Gaps = 6/178 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N+L+ +K+++ TR R+ G VDT G+ + Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN +I + L++F+++ T D + + LR P+I+ NK+D Sbjct: 71 KRAINRLMNKAASSSIGDVELVIFVVEGTRW-TLDDEMVLNKLRDGKAPVILAVNKVDNV 129 Query: 125 IAQRNF-----YEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 + + + ++F +IV ISAE L + +++ K + + P + I + Sbjct: 130 QEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPEATHHFPEDYITD 187 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 52/167 (31%), Positives = 84/167 (50%), Gaps = 9/167 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS-VSISWNWKNHPIEIFDTAGMRKP 264 IA+VGRPNVGKSTL+N+LLG +T ++ TR V I I + DT G+ Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYV-DTPGLHME 69 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 + ++ + K + S+ E I +++ T + D +++ + + V+LA+NK Sbjct: 70 EK--RAINRLMNKAASSSIGDVELVIFVVEGT-RWTLDDEMVLNKLRDGKAPVILAVNKV 126 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSV 371 D V +K +LL L+ A Q+ + I IS TG +D + V Sbjct: 127 DNVQEKADLLPHLQFLA----SQMNFLDIVPISAETGLNVDTIAAIV 169 >gi|228478255|ref|ZP_04062863.1| GTP-binding protein Era [Streptococcus salivarius SK126] gi|228249934|gb|EEK09204.1| GTP-binding protein Era [Streptococcus salivarius SK126] Length = 299 Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 48/178 (26%), Positives = 88/178 (49%), Gaps = 5/178 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKST N ++ +K+A++ + TR+++ G + +DT GI K Sbjct: 8 VAIIGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 ++ M + + E +LF++ + D+ I L++ +P+I+V NK+D Sbjct: 68 -TALGDFMVESAYSTLREVDTVLFMVPADEPRGKGDNMIIERLKQAKVPVILVINKIDKV 126 Query: 125 IAQRNFYEIYS----LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 + +I +DFKEI+ ISA S L V+ ++ + P + I ++ Sbjct: 127 HPDQLLEQIEDFRTQMDFKEIIPISALQGNNVSHLVDVLSDNLEEGFQYFPADQITDH 184 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/137 (28%), Positives = 69/137 (50%), Gaps = 5/137 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKST +N ++G + ++ TR+ + + I DT G+ KP Sbjct: 8 VAIIGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +L V+ + ++R +T + ++ A P K D I++ + V+L +NK D Sbjct: 68 T---ALGDFMVESAYSTLREVDTVLFMVPADEPRGKGDNMIIERLKQAKVPVILVINKID 124 Query: 326 MV--SDKLNLLQDLRTK 340 V L ++D RT+ Sbjct: 125 KVHPDQLLEQIEDFRTQ 141 >gi|117928001|ref|YP_872552.1| GTP-binding protein Era [Acidothermus cellulolyticus 11B] gi|117648464|gb|ABK52566.1| GTP-binding protein Era [Acidothermus cellulolyticus 11B] Length = 297 Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 49/170 (28%), Positives = 76/170 (44%), Gaps = 5/170 (2%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 IVG PNVGKSTL N +VK K+A+ + P TR + G +VDT G+ + Sbjct: 11 CIVGRPNVGKSTLLNAMVKTKVAITSDRPQTTRHVVRGVVHRPDAQLVVVDTPGLHKPRT 70 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD--- 122 + ++ND + E +I+F + + I P D + L + P V K D Sbjct: 71 L-LGSRLNDLARATLAEVDVIVFCLPADERIGPGDRFLADELNRIKTPTFAVVTKTDRVR 129 Query: 123 -TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHP 171 R+A++ D+ EIV +SA D L ++ + P +P Sbjct: 130 KPRVAEQLLAVAELGDWAEIVPVSAVTDYQVELLVDLLVARLPEGRPYYP 179 Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 3/68 (4%) Query: 200 ISKPLR---IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIF 256 +S P R +VGRPNVGKSTL+N ++ +T + TR V + + + + Sbjct: 1 MSHPFRSGFACIVGRPNVGKSTLLNAMVKTKVAITSDRPQTTRHVVRGVVHRPDAQLVVV 60 Query: 257 DTAGMRKP 264 DT G+ KP Sbjct: 61 DTPGLHKP 68 >gi|297539957|ref|YP_003675726.1| tRNA modification GTPase TrmE [Methylotenera sp. 301] gi|297259304|gb|ADI31149.1| tRNA modification GTPase TrmE [Methylotenera sp. 301] Length = 449 Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 64/214 (29%), Positives = 110/214 (51%), Gaps = 24/214 (11%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + +VG PNVGKS+L N+L +++A+V + G TRD + INGV +++DTAG+ + Sbjct: 221 VVLVGQPNVGKSSLMNQLAGEEIAIVTSIAGTTRDTIKNAIQINGVPLHVIDTAGLRETD 280 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + K ++T A A++ L L+D+ GIT + +I + L + I I V NK+D Sbjct: 281 D-EVEKFGIERTWRAAQSANIALLLVDAAHGITETEKSILARL-PQEIRKIWVHNKIDVA 338 Query: 125 -----IAQRN-FYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 +A+++ IY +SA+ G L S + K+ Y N+ + Sbjct: 339 NEPALVAEKDGAMHIY---------LSAKTGAGLDLLKSHLLKL--AGYENNSEGVFMAR 387 Query: 179 KRNEESPKE-----NITSEGKSSVKNISKPLRIA 207 R+ E+ + N SE +S + I++ LRI+ Sbjct: 388 ARHLEALSQVQIHLNFASEQINSAELIAEELRIS 421 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 27/97 (27%), Positives = 59/97 (60%), Gaps = 3/97 (3%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + + + +VG+PNVGKS+L+N+L G + S +G TRD++ + P+ + DTA Sbjct: 215 LREGINVVLVGQPNVGKSSLMNQLAGEEIAIVTSIAGTTRDTIKNAIQINGVPLHVIDTA 274 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDAT 296 G+R+ + +E+ ++++ ++ ++ ++L+DA Sbjct: 275 GLRETD---DEVEKFGIERTWRAAQSANIALLLVDAA 308 >gi|313905842|ref|ZP_07839200.1| GTP-binding protein Era [Eubacterium cellulosolvens 6] gi|313469356|gb|EFR64700.1| GTP-binding protein Era [Eubacterium cellulosolvens 6] Length = 304 Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 51/166 (30%), Positives = 83/166 (50%), Gaps = 11/166 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIV--DTAGIAD 62 +A++G PNVGKSTL N L+ +K+A+ P TR+R+ Q I N IV DT GI Sbjct: 11 VALIGRPNVGKSTLMNHLIGQKIAITSRKPQTTRNRI--QTIYNSDRGQIVFLDTPGIHK 68 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 KN + + M E ++ +++LI+ A + + I L K +P+I+V NK+D Sbjct: 69 AKN-KLGEYMVYAAESSLKNVDAVMWLIEPGAYVGAAEQHIVQMLDKAGLPVILVINKID 127 Query: 123 TRIAQRNFYEIYS-----LDFKEIVEISAEHDLGTSELHSVIFKIF 163 ++ + E F++IV +SA+ L +F + Sbjct: 128 -KVKKDVVAETIQTYGKFTRFEDIVAVSAKQSTNLDGLIDSLFSVL 172 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 59/122 (48%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKSTL+N L+G +T + TR+ + +N I DT G+ K Sbjct: 11 VALIGRPNVGKSTLMNHLIGQKIAITSRKPQTTRNRIQTIYNSDRGQIVFLDTPGIHKAK 70 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + V + S++ + + L++ + IV + G V+L +NK D Sbjct: 71 ---NKLGEYMVYAAESSLKNVDAVMWLIEPGAYVGAAEQHIVQMLDKAGLPVILVINKID 127 Query: 326 MV 327 V Sbjct: 128 KV 129 >gi|307245401|ref|ZP_07527489.1| GTP-binding protein era [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307254356|ref|ZP_07536194.1| GTP-binding protein era [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258814|ref|ZP_07540546.1| GTP-binding protein era [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306853742|gb|EFM85959.1| GTP-binding protein era [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306862655|gb|EFM94611.1| GTP-binding protein era [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306867165|gb|EFM99021.1| GTP-binding protein era [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 304 Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 53/177 (29%), Positives = 88/177 (49%), Gaps = 8/177 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N+++ +K+++ TR R+ G + VDT G+ + Sbjct: 15 IAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIHTEDQYQAIYVDTPGLHIEE 74 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN AI + LI+F+++ T D + + LR P+++ NK+D Sbjct: 75 KRAINRLMNRAASSAIGDVDLIIFVVEG-TKWTDDDEMVLNKLRAAKAPVVLAINKVDN- 132 Query: 125 IAQRN--FYEIYSL----DFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 I +++ I L DF EI+ ISA+ L ++ K ++ + P E + Sbjct: 133 IKEKDELLPHITELSKKFDFAEILPISAQRGKNVHILQKIVRKSLREGGHHFPEEYV 189 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 64/130 (49%), Gaps = 5/130 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMR-KP 264 IA+VGRPNVGKSTL+N++LG +T ++ TR + + DT G+ + Sbjct: 15 IAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIHTEDQYQAIYVDTPGLHIEE 74 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 R L + ++ V + I +++ T + D +++ + VVLA+NK Sbjct: 75 KRAINRLMNRAASSAIGDV---DLIIFVVEGT-KWTDDDEMVLNKLRAAKAPVVLAINKV 130 Query: 325 DMVSDKLNLL 334 D + +K LL Sbjct: 131 DNIKEKDELL 140 >gi|313887368|ref|ZP_07821058.1| tRNA modification GTPase TrmE [Porphyromonas asaccharolytica PR426713P-I] gi|312923136|gb|EFR33955.1| tRNA modification GTPase TrmE [Porphyromonas asaccharolytica PR426713P-I] Length = 470 Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 35/86 (40%), Positives = 58/86 (67%), Gaps = 3/86 (3%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+GAPNVGKS+L N L++ + A+V + PG TRD + G+ I G +F ++DTAG+ + Sbjct: 220 AIIGAPNVGKSSLLNALLQHERAIVSDIPGTTRDTVEGRLTIRGTLFRLIDTAGLR--QT 277 Query: 66 CSIAKQMN-DQTELAINEAHLILFLI 90 + +Q+ +++ I+ A LIL++I Sbjct: 278 TDLVEQLGIERSYQQISSARLILWVI 303 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 49/189 (25%), Positives = 94/189 (49%), Gaps = 21/189 (11%) Query: 195 SSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIE 254 S+ + + + + A++G PNVGKS+L+N LL + R + G TRD+V + Sbjct: 208 STGQELQQGIPTAIIGAPNVGKSSLLNALLQHERAIVSDIPGTTRDTVEGRLTIRGTLFR 267 Query: 255 IFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP----FEKQDLRIVDSV 310 + DTAG+R+ T+ +EQ +++S Q + + + ++ +P E Q L + + Sbjct: 268 LIDTAGLRQ---TTDLVEQLGIERSYQQISSARLILWVIAPPLPTWDELEAQ-LSEILRL 323 Query: 311 FNTGHAVVLALNKWDMVSDK---------LNLLQDLRTKAIKNLPQIGDIYINTISGRTG 361 + +++ LNK D+++++ +LLQ K P + I+ + + Sbjct: 324 TSPDSTLIILLNKRDLLTEREVTDWLSNCSSLLQRTNGKPHTTSP----LAISARAAQGI 379 Query: 362 EGLDDLMVS 370 E L++LMVS Sbjct: 380 EALEELMVS 388 >gi|319946540|ref|ZP_08020775.1| GTP-binding protein Era [Streptococcus australis ATCC 700641] gi|319747286|gb|EFV99544.1| GTP-binding protein Era [Streptococcus australis ATCC 700641] Length = 299 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 49/179 (27%), Positives = 89/179 (49%), Gaps = 7/179 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKST N ++ +K+A++ + TR+++ G + +DT GI K Sbjct: 8 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM--- 121 ++ M + + E +LF++ + D I L+ +P+I+V NK+ Sbjct: 68 -TALGDFMVESAYSTLREVDTVLFMVPADEARGKGDDMIIERLKAAKVPVILVVNKIDKV 126 Query: 122 --DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 D +AQ + + +DFKEIV ISA S L ++ + ++ + P + I ++ Sbjct: 127 HPDQLLAQIDDFR-SQMDFKEIVPISALQGNNVSRLIDILSENLEEGFQYFPADQITDH 184 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/137 (27%), Positives = 67/137 (48%), Gaps = 5/137 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKST +N ++G + ++ TR+ + + I DT G+ KP Sbjct: 8 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +L V+ + ++R +T + ++ A K D I++ + V+L +NK D Sbjct: 68 T---ALGDFMVESAYSTLREVDTVLFMVPADEARGKGDDMIIERLKAAKVPVILVVNKID 124 Query: 326 MVSDKLNLLQ--DLRTK 340 V L Q D R++ Sbjct: 125 KVHPDQLLAQIDDFRSQ 141 >gi|282850278|ref|ZP_06259657.1| GTP-binding protein Era [Veillonella parvula ATCC 17745] gi|282579771|gb|EFB85175.1| GTP-binding protein Era [Veillonella parvula ATCC 17745] Length = 299 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 50/171 (29%), Positives = 82/171 (47%), Gaps = 9/171 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTL N L+ K+A+V + TR+R+ +DT G+ K Sbjct: 12 VAVVGRPNVGKSTLINALIGDKIAIVSDKAQTTRNRIICVYTDESKQIVFMDTPGVHKPK 71 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + + M D ++ E +LF++ P D+ I L++ +P+ +V NK+DT Sbjct: 72 H-KLGEFMVDAAIESLKETEAVLFVVAGNEKRGPGDNFIIEQLKRVKVPVFLVVNKIDTL 130 Query: 125 IAQRNFYEIYSLD----FKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHP 171 + I S F ++ ISA+ SE I K+ ++ P P Sbjct: 131 KKEELLEAIVSYQDAYPFAGVIPISAKDKENLSE----ILKVLEETLPEGP 177 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 3/120 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +AVVGRPNVGKSTLIN L+G + ++ TR+ + + ++ I DT G+ KP Sbjct: 12 VAVVGRPNVGKSTLINALIGDKIAIVSDKAQTTRNRIICVYTDESKQIVFMDTPGVHKPK 71 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + V +++S++ E + ++ D I++ + V L +NK D Sbjct: 72 H---KLGEFMVDAAIESLKETEAVLFVVAGNEKRGPGDNFIIEQLKRVKVPVFLVVNKID 128 >gi|269798051|ref|YP_003311951.1| GTP-binding protein Era [Veillonella parvula DSM 2008] gi|269094680|gb|ACZ24671.1| GTP-binding protein Era [Veillonella parvula DSM 2008] Length = 299 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 50/171 (29%), Positives = 82/171 (47%), Gaps = 9/171 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTL N L+ K+A+V + TR+R+ +DT G+ K Sbjct: 12 VAVVGRPNVGKSTLINALIGDKIAIVSDKAQTTRNRIICVYTDESKQIVFMDTPGVHKPK 71 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + + M D ++ E +LF++ P D+ I L++ +P+ +V NK+DT Sbjct: 72 H-KLGEFMVDAAIESLKETEAVLFVVAGNEKRGPGDNFIIEQLKRVKVPVFLVVNKIDTL 130 Query: 125 IAQRNFYEIYSLD----FKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHP 171 + I S F ++ ISA+ SE I K+ ++ P P Sbjct: 131 KKEELLEAIVSYQDAYPFAGVIPISAKDKENLSE----ILKVLEETLPEGP 177 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 3/120 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +AVVGRPNVGKSTLIN L+G + ++ TR+ + + ++ I DT G+ KP Sbjct: 12 VAVVGRPNVGKSTLINALIGDKIAIVSDKAQTTRNRIICVYTDESKQIVFMDTPGVHKPK 71 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + V +++S++ E + ++ D I++ + V L +NK D Sbjct: 72 H---KLGEFMVDAAIESLKETEAVLFVVAGNEKRGPGDNFIIEQLKRVKVPVFLVVNKID 128 >gi|217964392|ref|YP_002350070.1| GTP-binding protein Era [Listeria monocytogenes HCC23] gi|290894223|ref|ZP_06557192.1| GTP-binding protein Era [Listeria monocytogenes FSL J2-071] gi|254783659|sp|B8DE49|ERA_LISMH RecName: Full=GTPase Era gi|217333662|gb|ACK39456.1| GTP-binding protein Era [Listeria monocytogenes HCC23] gi|290556220|gb|EFD89765.1| GTP-binding protein Era [Listeria monocytogenes FSL J2-071] gi|307571043|emb|CAR84222.1| GTP-binding protein (Bex protein) [Listeria monocytogenes L99] Length = 301 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 48/150 (32%), Positives = 80/150 (53%), Gaps = 13/150 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N ++ +K+A++ + TR+++ G + +DT GI K Sbjct: 10 VAIVGRPNVGKSTLLNHIIGQKIAIMSDKAQTTRNKVQGVYTTDESQIIFIDTPGIHKPK 69 Query: 65 NCSIAKQMNDQTELAIN---EAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 + K + ++A+N E LI F+ID+ G D I L+ P+ ++ NK+ Sbjct: 70 H----KLGDFMVKIALNTFQEVDLIYFVIDASTGFGRGDEFIIEKLKNVQTPVFLLINKI 125 Query: 122 DTRIAQRNFYEIYS-----LDFKEIVEISA 146 D IA + +++ ++F EI+ ISA Sbjct: 126 DL-IAPEDLFKLIEQYRDLMEFDEIIPISA 154 Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 42/144 (29%), Positives = 74/144 (51%), Gaps = 8/144 (5%) Query: 200 ISKPLR---IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIF 256 +S+P + +A+VGRPNVGKSTL+N ++G + ++ TR+ V + I Sbjct: 1 MSEPFKSGFVAIVGRPNVGKSTLLNHIIGQKIAIMSDKAQTTRNKVQGVYTTDESQIIFI 60 Query: 257 DTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHA 316 DT G+ KP L VK ++ + + + ++DA+ F + D I++ + N Sbjct: 61 DTPGIHKPKH---KLGDFMVKIALNTFQEVDLIYFVIDASTGFGRGDEFIIEKLKNVQTP 117 Query: 317 VVLALNKWDMVS--DKLNLLQDLR 338 V L +NK D+++ D L++ R Sbjct: 118 VFLLINKIDLIAPEDLFKLIEQYR 141 >gi|167582764|ref|ZP_02375638.1| tRNA modification GTPase TrmE [Burkholderia thailandensis TXDOH] Length = 467 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 69/119 (57%), Gaps = 2/119 (1%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 ++ + G PNVGKS+L N L ++A+V G TRD++ + G+ +I+DTAG+ + Sbjct: 228 SVVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRET 287 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 ++ + K +T I A ++L L+D+++G+ P D AI + +P++ V NK D Sbjct: 288 ED-EVEKIGIARTWGEIERADVVLHLLDARSGLGPDDEAIAARF-PAGVPVVRVLNKTD 344 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 53/194 (27%), Positives = 92/194 (47%), Gaps = 23/194 (11%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + L + + G+PNVGKS+L+N L G + +G TRD V+ + + P+ I DTA Sbjct: 223 LREGLSVVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTA 282 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R+ + +E+ + ++ + + + LLDA D I + F G VV Sbjct: 283 GLRETE---DEVEKIGIARTWGEIERADVVLHLLDARSGLGPDDEAIA-ARFPAGVPVVR 338 Query: 320 ALNKWDMVSDKLNLLQDLRTKAIKNLPQIG------DIYINTISGRTGEGLDDLMVSVLE 373 LNK D+ T+A ++ ++G D+ +S + G+G+D L +L Sbjct: 339 VLNKTDL------------TEAPASVARVGGGAERADLCEVRLSAKRGDGIDLLRGELLR 386 Query: 374 INKLWKTRITTSYL 387 I W+ + YL Sbjct: 387 IAG-WQAGAESVYL 399 >gi|58338215|ref|YP_194800.1| tRNA modification GTPase TrmE [Lactobacillus acidophilus NCFM] gi|227902598|ref|ZP_04020403.1| tRNA modification GTPase TrmE [Lactobacillus acidophilus ATCC 4796] gi|75357100|sp|Q5FHQ5|MNME_LACAC RecName: Full=tRNA modification GTPase mnmE gi|58255532|gb|AAV43769.1| thiophene and furan oxidation protein [Lactobacillus acidophilus NCFM] gi|227869687|gb|EEJ77108.1| tRNA modification GTPase TrmE [Lactobacillus acidophilus ATCC 4796] Length = 461 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 55/177 (31%), Positives = 89/177 (50%), Gaps = 6/177 (3%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AIVG PNVGKS+L N L + A+V + G TRD L + GV ++DTAGI + Sbjct: 228 AIVGQPNVGKSSLLNYLTQSDKAIVTDVAGTTRDTLEEYVSVKGVPLELIDTAGIHHTDD 287 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 + K ++++ A+ A L+L LID+ +T D ++ + K II+ NK D + Sbjct: 288 -KVEKIGVERSKKALERADLVLLLIDASKELTAEDKSLINETDSKK--RIIILNKSD--L 342 Query: 126 AQR-NFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 Q+ ++ L E++ S + EL +I K+F N +++ N+R Sbjct: 343 GQKITVEQMKKLTGSEVISTSILKEDNMDELEELINKLFFAGIENSNDQVMVTNQRQ 399 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 70/123 (56%), Gaps = 5/123 (4%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 L A+VG+PNVGKS+L+N L ++ + +G TRD++ + K P+E+ DTAG+ Sbjct: 225 LATAIVGQPNVGKSSLLNYLTQSDKAIVTDVAGTTRDTLEEYVSVKGVPLELIDTAGIHH 284 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 + +E+ V++S +++ + ++L+DA+ +D +++ + ++ LNK Sbjct: 285 TD---DKVEKIGVERSKKALERADLVLLLIDASKELTAEDKSLINETDSKKRIII--LNK 339 Query: 324 WDM 326 D+ Sbjct: 340 SDL 342 >gi|71894377|ref|YP_278485.1| tRNA modification GTPase TrmE [Mycoplasma synoviae 53] gi|123644156|sp|Q4A647|MNME_MYCS5 RecName: Full=tRNA modification GTPase mnmE gi|71851165|gb|AAZ43774.1| tRNA modification GTPase ThdF/TrmE [Mycoplasma synoviae 53] Length = 463 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 45/120 (37%), Positives = 68/120 (56%), Gaps = 1/120 (0%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKS+L N ++K+ A+V N G TRD + G ++ IF I+DTAGI + Sbjct: 237 LAIVGKPNVGKSSLLNTMLKEDKAIVTNVAGTTRDIVEGIYYLDNFIFKIIDTAGIRKTR 296 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I K +++ AI +A ++L L D+ +D I +++ N I V NK D + Sbjct: 297 Q-EIEKIGIERSYKAILDADIVLHLFDNLNSEDEFDLDIKKIVQENNKNYIKVVNKSDLK 355 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 39/131 (29%), Positives = 72/131 (54%), Gaps = 3/131 (2%) Query: 199 NISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDT 258 N + +++A+VG+PNVGKS+L+N +L ++ + + +G TRD V + N +I DT Sbjct: 230 NYFEGIKLAIVGKPNVGKSSLLNTMLKEDKAIVTNVAGTTRDIVEGIYYLDNFIFKIIDT 289 Query: 259 AGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVV 318 AG+RK + +E+ +++S +++ + + L D ++ DL I V + Sbjct: 290 AGIRKTR---QEIEKIGIERSYKAILDADIVLHLFDNLNSEDEFDLDIKKIVQENNKNYI 346 Query: 319 LALNKWDMVSD 329 +NK D+ SD Sbjct: 347 KVVNKSDLKSD 357 >gi|37527215|ref|NP_930559.1| GTP-binding protein Era [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786649|emb|CAE15713.1| GTP-binding protein era [Photorhabdus luminescens subsp. laumondii TTO1] Length = 302 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 45/160 (28%), Positives = 80/160 (50%), Gaps = 6/160 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N+L+ +K+++ P TR R+ G VDT G+ + Sbjct: 11 VAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGIHTEGAYQIIYVDTPGLHIEE 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD-- 122 +I + MN +I + L++F+++ TP D + + LR P+++ NK+D Sbjct: 71 KRAINRLMNRAASSSIGDVELVIFVVEG-THWTPDDEMVLNKLRNLRCPVLLAINKVDNV 129 Query: 123 ---TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVI 159 T + + + F ++V +SAE + + ++ Sbjct: 130 TDKTSLLPHIGFLSKQMSFLDVVPMSAEKGMNVDTIAKIV 169 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/130 (33%), Positives = 67/130 (51%), Gaps = 5/130 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMR-KP 264 +A+VGRPNVGKSTL+N+LLG +T + TR + + I DT G+ + Sbjct: 11 VAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGIHTEGAYQIIYVDTPGLHIEE 70 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 R L + S+ V E I +++ T + D +++ + N V+LA+NK Sbjct: 71 KRAINRLMNRAASSSIGDV---ELVIFVVEGT-HWTPDDEMVLNKLRNLRCPVLLAINKV 126 Query: 325 DMVSDKLNLL 334 D V+DK +LL Sbjct: 127 DNVTDKTSLL 136 >gi|21672311|ref|NP_660378.1| tRNA modification GTPase TrmE [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|2495118|sp|Q44633|MNME_BUCAP RecName: Full=tRNA modification GTPase mnmE gi|1369898|dbj|BAA12845.1| thiophene and furan oxidation protein [Buchnera aphidicola] gi|2827009|gb|AAC38101.1| tRNA methyltransferase [Buchnera aphidicola] gi|21622910|gb|AAM67589.1| thiophene and furan oxidation protein [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 456 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 58/186 (31%), Positives = 91/186 (48%), Gaps = 25/186 (13%) Query: 187 ENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISW 246 +NI SEG I + RI +VG PN GKS+L+N L +R + G TRD + + Sbjct: 206 KNIVSEGSL----IREAKRIVIVGPPNAGKSSLLNVLSCRDRAIVTDLPGTTRDVLYENI 261 Query: 247 NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRI 306 N EI DTAG+R+ + +E+ +++S + ++ + + ++D TI E Q Sbjct: 262 NIHGISCEIIDTAGLRETE---DKIEKIGIQRSWEMIKNSDHVLYVMDKTISLEDQKKTS 318 Query: 307 VD-----SVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTG 361 + S +N V LNK D+V D + + I+NL I +IS TG Sbjct: 319 IQFMKQISSYNI-QEVTFVLNKNDLVEDFCGITK------IENLLFI------SISALTG 365 Query: 362 EGLDDL 367 +G+D L Sbjct: 366 QGIDIL 371 Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 55/105 (52%), Gaps = 1/105 (0%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 I IVG PN GKS+L N L + A+V + PG TRD LY I+G+ I+DTAG+ + + Sbjct: 221 IVIVGPPNAGKSSLLNVLSCRDRAIVTDLPGTTRDVLYENINIHGISCEIIDTAGLRETE 280 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRK 109 + + E+ N H +L+++D + F+++ Sbjct: 281 DKIEKIGIQRSWEMIKNSDH-VLYVMDKTISLEDQKKTSIQFMKQ 324 >gi|302388592|ref|YP_003824414.1| tRNA modification GTPase TrmE [Clostridium saccharolyticum WM1] gi|302199220|gb|ADL06791.1| tRNA modification GTPase TrmE [Clostridium saccharolyticum WM1] Length = 459 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 48/158 (30%), Positives = 84/158 (53%), Gaps = 6/158 (3%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 I+G PN GKS+L N LV ++ A+V + G TRD L Q + + NI+DTAGI D ++ Sbjct: 227 ILGKPNAGKSSLLNVLVGEERAIVTDIAGTTRDTLKEQIRLEDLSLNIIDTAGIRDTQDV 286 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD-TRI 125 + K ++ A EA LI++++D + D I +F+ + +++ NK D + Sbjct: 287 -VEKIGVEKARSAAQEADLIIYVVDGSCPLDENDEEILTFIESRKAVVLL--NKTDLIPV 343 Query: 126 AQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 + ++ + +++ ISA+ LG L + I +F Sbjct: 344 VTEDMLKMRT--RHQVIPISAKERLGIGNLENEIKAMF 379 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 38/128 (29%), Positives = 72/128 (56%), Gaps = 5/128 (3%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 +S+ + ++G+PN GKS+L+N L+G R + +G TRD++ ++ + I DTA Sbjct: 219 LSEGIETVILGKPNAGKSSLLNVLVGEERAIVTDIAGTTRDTLKEQIRLEDLSLNIIDTA 278 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R + E + V+K+ + + + I ++D + P ++ D I+ + + AVVL Sbjct: 279 GIRDTQDVVEKI---GVEKARSAAQEADLIIYVVDGSCPLDENDEEIL-TFIESRKAVVL 334 Query: 320 ALNKWDMV 327 LNK D++ Sbjct: 335 -LNKTDLI 341 >gi|83655357|gb|ABC39420.1| tRNA modification GTPase TrmE [Burkholderia thailandensis E264] Length = 540 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 69/119 (57%), Gaps = 2/119 (1%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 ++ + G PNVGKS+L N L ++A+V G TRD++ + G+ +I+DTAG+ + Sbjct: 301 SVVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRET 360 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 ++ + K +T I A ++L L+D+++G+ P D AI + +P++ V NK D Sbjct: 361 ED-EVEKIGIARTWGEIERADVVLHLLDARSGLGPDDEAIAARF-PAGVPVVRVLNKTD 417 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 53/194 (27%), Positives = 92/194 (47%), Gaps = 23/194 (11%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + L + + G+PNVGKS+L+N L G + +G TRD V+ + + P+ I DTA Sbjct: 296 LREGLSVVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTA 355 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R+ + +E+ + ++ + + + LLDA D I + F G VV Sbjct: 356 GLRETE---DEVEKIGIARTWGEIERADVVLHLLDARSGLGPDDEAIA-ARFPAGVPVVR 411 Query: 320 ALNKWDMVSDKLNLLQDLRTKAIKNLPQIG------DIYINTISGRTGEGLDDLMVSVLE 373 LNK D+ T+A ++ ++G D+ +S + G+G+D L +L Sbjct: 412 VLNKTDL------------TEAPASVARVGSGAERADLCEVRLSAKRGDGIDLLRGELLR 459 Query: 374 INKLWKTRITTSYL 387 I W+ + YL Sbjct: 460 IAG-WQAGAESVYL 472 >gi|332522452|ref|ZP_08398704.1| tRNA modification GTPase TrmE [Streptococcus porcinus str. Jelinkova 176] gi|332313716|gb|EGJ26701.1| tRNA modification GTPase TrmE [Streptococcus porcinus str. Jelinkova 176] Length = 458 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 39/129 (30%), Positives = 75/129 (58%), Gaps = 5/129 (3%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L A++GRPNVGKS+L+N LL ++ + +G TRD + N K P+++ D Sbjct: 219 KILREGLSTAIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPLKLID 278 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R + E + V++S ++++ + +++L+A+ P QD +++ + + Sbjct: 279 TAGIRDTDDLVEKI---GVERSKKALKEADLVLLVLNASEPLTLQDRTLLELSQESNRLI 335 Query: 318 VLALNKWDM 326 + LNK D+ Sbjct: 336 L--LNKTDL 342 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 68/120 (56%), Gaps = 1/120 (0%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+++ A+V + G TRD + I GV ++DTAGI D + Sbjct: 228 AIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPLKLIDTAGIRDTDD 287 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 + K ++++ A+ EA L+L ++++ +T D + ++ N I++ + RI Sbjct: 288 L-VEKIGVERSKKALKEADLVLLVLNASEPLTLQDRTLLELSQESNRLILLNKTDLPERI 346 >gi|134096615|ref|YP_001101690.1| tRNA modification GTPase TrmE [Herminiimonas arsenicoxydans] gi|205829158|sp|A4GAN2|MNME_HERAR RecName: Full=tRNA modification GTPase mnmE gi|133740518|emb|CAL63569.1| tRNA modification GTPase TrmE [Herminiimonas arsenicoxydans] Length = 466 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 42/120 (35%), Positives = 66/120 (55%), Gaps = 3/120 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 I + G PNVGKS+L N L +A+V G TRD++ I G+ N++DTAGI D Sbjct: 227 IVLAGQPNVGKSSLLNALAGSDVAIVTPIAGTTRDKVIETIQIEGIPVNVIDTAGIRDAA 286 Query: 65 NCS--IAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + + + ++T A+ A +I+ ++D+ G T D IT N+P++ V NK+D Sbjct: 287 DAGDEVERIGIERTWAAVQTADVIVHMLDASRGPTRADEQITERF-PANVPVMRVWNKID 345 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 51/185 (27%), Positives = 91/185 (49%), Gaps = 16/185 (8%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 L I + G+PNVGKS+L+N L G + + +G TRD V + + P+ + DTAG+R Sbjct: 225 LNIVLAGQPNVGKSSLLNALAGSDVAIVTPIAGTTRDKVIETIQIEGIPVNVIDTAGIRD 284 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 + + +E+ ++++ +V+T + + +LDA+ + D +I + F V+ NK Sbjct: 285 AADAGDEVERIGIERTWAAVQTADVIVHMLDASRGPTRADEQITER-FPANVPVMRVWNK 343 Query: 324 WDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTG-EGLDDLMVSVLEINKLWKTRI 382 D+ + AI +P IY++ TG G+D L +L + W+ Sbjct: 344 IDLSGHR---------PAIDRMPDATHIYLSA----TGLLGMDLLRTELLHLVG-WQQTG 389 Query: 383 TTSYL 387 + YL Sbjct: 390 ESLYL 394 >gi|307249747|ref|ZP_07531726.1| GTP-binding protein era [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306858255|gb|EFM90332.1| GTP-binding protein era [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 304 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 53/177 (29%), Positives = 88/177 (49%), Gaps = 8/177 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N+++ +K+++ TR R+ G + VDT G+ + Sbjct: 15 IAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIHTEDQYQAIYVDTPGLHIEE 74 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN AI + LI+F+++ T D + + LR P+++ NK+D Sbjct: 75 KRAINRLMNRAASSAIGDVDLIIFVVEG-TKWTDDDEMVLNKLRAAKAPVVLAINKVDN- 132 Query: 125 IAQRN--FYEIYSL----DFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 I +++ I L DF EI+ ISA+ L ++ K ++ + P E + Sbjct: 133 IKEKDELLPHITELSKKFDFAEILPISAQRGKNVHILQKIVRKSLREGGHHFPEEYV 189 Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 64/130 (49%), Gaps = 5/130 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMR-KP 264 IA+VGRPNVGKSTL+N++LG +T ++ TR + + DT G+ + Sbjct: 15 IAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIHTEDQYQAIYVDTPGLHIEE 74 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 R L + ++ V + I +++ T + D +++ + VVLA+NK Sbjct: 75 KRAINRLMNRAASSAIGDV---DLIIFVVEGT-KWTDDDEMVLNKLRAAKAPVVLAINKV 130 Query: 325 DMVSDKLNLL 334 D + +K LL Sbjct: 131 DNIKEKDELL 140 >gi|260662533|ref|ZP_05863428.1| tRNA modification GTPase TrmE [Lactobacillus fermentum 28-3-CHN] gi|260553224|gb|EEX26167.1| tRNA modification GTPase TrmE [Lactobacillus fermentum 28-3-CHN] Length = 462 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 38/129 (29%), Positives = 74/129 (57%), Gaps = 5/129 (3%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + L A++GRPNVGKS+L+N LL ++ + +G TRD + N P+++ D Sbjct: 218 KVLRDGLATAIIGRPNVGKSSLLNALLHEDKAIVTEVAGTTRDVIEEYVNVAGVPLKLID 277 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R +++E+ V++S Q++ T + ++L+D++ ++D ++++ V Sbjct: 278 TAGIRHTD---DTVEKIGVERSKQAIETADLILLLIDSSRLLTEEDRALIEATAQKPRMV 334 Query: 318 VLALNKWDM 326 + NK D+ Sbjct: 335 I--FNKTDL 341 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 54/159 (33%), Positives = 82/159 (51%), Gaps = 5/159 (3%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+ + A+V G TRD + + GV ++DTAGI + Sbjct: 227 AIIGRPNVGKSSLLNALLHEDKAIVTEVAGTTRDVIEEYVNVAGVPLKLIDTAGIRHTDD 286 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 ++ K ++++ AI A LIL LIDS +T D A+ +K P +++ NK D Sbjct: 287 -TVEKIGVERSKQAIETADLILLLIDSSRLLTEEDRALIEATAQK--PRMVIFNKTDLP- 342 Query: 126 AQRNFYEIYSL-DFKEIVEISAEHDLGTSELHSVIFKIF 163 AQ + E+ L + +++ S G EL I F Sbjct: 343 AQVDLAELTELVNGDPVIQTSILEHAGMQELGQAIAHRF 381 >gi|255535475|ref|YP_003095846.1| GTP-binding protein Era [Flavobacteriaceae bacterium 3519-10] gi|255341671|gb|ACU07784.1| GTP-binding protein Era [Flavobacteriaceae bacterium 3519-10] Length = 291 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 43/120 (35%), Positives = 71/120 (59%), Gaps = 6/120 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIV--DTAGIAD 62 + IVG PNVGKSTL N+L+ +K+A+V TR R++G I N IV DT G+ D Sbjct: 7 VNIVGKPNVGKSTLLNQLMGEKLAIVTQKAQTTRHRIFG--IYNEEDLQIVFSDTPGVLD 64 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 K + ++M D + ++ +A + LF++D P+++ + L K +P++I+ NK+D Sbjct: 65 PK-YGLQERMMDFVKDSLQDADVFLFIVDILDKSEPFEYLVDK-LNKIPVPVLILVNKID 122 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 4/120 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 + +VG+PNVGKSTL+N+L+G + ++ TR + +N ++ I DT G+ P Sbjct: 7 VNIVGKPNVGKSTLLNQLMGEKLAIVTQKAQTTRHRIFGIYNEEDLQIVFSDTPGVLDPK 66 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + VK S+Q + +LD + PFE +VD + V++ +NK D Sbjct: 67 YGLQERMMDFVKDSLQDADVFLFIVDILDKSEPFE----YLVDKLNKIPVPVLILVNKID 122 >gi|51245541|ref|YP_065425.1| GTP-binding protein Era-like protein [Desulfotalea psychrophila LSv54] gi|50876578|emb|CAG36418.1| probable GTP-binding protein Era homolog [Desulfotalea psychrophila LSv54] Length = 313 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 55/169 (32%), Positives = 85/169 (50%), Gaps = 14/169 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIV--DTAGIAD 62 +AIVG PN GKSTL N+L+ +K+++V + P TR+R+ G I+N + IV DT G+ Sbjct: 22 VAIVGPPNAGKSTLMNQLLGQKISIVTSKPQTTRNRILG--IVNDDAYQIVLLDTPGLHK 79 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHA-----ITSFLRKKNIPIIIV 117 + M E +++E +LFL+D + P A + ++ K P I+V Sbjct: 80 ADEPLNIEMMRVALE-SLSEVDAVLFLVDVSLPLPPKALAKQREELAGYMEKIESPAILV 138 Query: 118 SNKMDTRIAQRNFYEIYS----LDFKEIVEISAEHDLGTSELHSVIFKI 162 NK+D Q+ I S FK +V ISA + G L I ++ Sbjct: 139 LNKVDLIDKQKLLPMIESYAKLFPFKAVVPISALNGDGADNLLKEILEL 187 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 51/174 (29%), Positives = 87/174 (50%), Gaps = 13/174 (7%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VG PN GKSTL+N+LLG + S+ TR+ + N + I + DT G+ K Sbjct: 22 VAIVGPPNAGKSTLMNQLLGQKISIVTSKPQTTRNRILGIVNDDAYQIVLLDTPGLHKAD 81 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIP-----FEKQDLRIVDSVFNTGHAVVLA 320 E L + ++ +++S+ + + L+D ++P KQ + + +L Sbjct: 82 ---EPLNIEMMRVALESLSEVDAVLFLVDVSLPLPPKALAKQREELAGYMEKIESPAILV 138 Query: 321 LNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEI 374 LNK D++ DK LL + + A K P + IS G+G D+L+ +LE+ Sbjct: 139 LNKVDLI-DKQKLLPMIESYA-KLFPFKA---VVPISALNGDGADNLLKEILEL 187 >gi|291571472|dbj|BAI93744.1| GTP-binding protein Era homolog [Arthrospira platensis NIES-39] Length = 310 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 48/169 (28%), Positives = 89/169 (52%), Gaps = 6/169 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 + ++GRPNVGKSTL+N+L+G +T + TR+ + + I DT G+ KP Sbjct: 21 VGIIGRPNVGKSTLMNKLVGQKIAITSPIAQTTRNRLRGILTTDSAQIIFVDTPGIHKPH 80 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + VK + ++ + + + ++D+++ D IVD + +T V+L LNKWD Sbjct: 81 ---HQLGKVLVKNAKLAIASVDVLVFVVDSSVMSGGGDRYIVDLLTHTKVPVILGLNKWD 137 Query: 326 MVSDKLNLL-QDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 + D+ + Q + A N Q+ + + ++G E L +L+++ L+ Sbjct: 138 LQPDQYEAIDQSYQQFAEANQWQM--VKFSAVTGAGVETLQNLLINSLD 184 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 44/139 (31%), Positives = 68/139 (48%), Gaps = 4/139 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + I+G PNVGKSTL N+LV +K+A+ TR+RL G + VDT GI Sbjct: 21 VGIIGRPNVGKSTLMNKLVGQKIAITSPIAQTTRNRLRGILTTDSAQIIFVDTPGIHK-P 79 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + K + +LAI +++F++DS D I L +P+I+ NK D Sbjct: 80 HHQLGKVLVKNAKLAIASVDVLVFVVDSSVMSGGGDRYIVDLLTHTKVPVILGLNKWDL- 138 Query: 125 IAQRNFYEIYSLDFKEIVE 143 Q + YE +++ E Sbjct: 139 --QPDQYEAIDQSYQQFAE 155 >gi|167586634|ref|ZP_02379022.1| GTP-binding protein Era [Burkholderia ubonensis Bu] Length = 299 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 46/149 (30%), Positives = 75/149 (50%), Gaps = 7/149 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N LV +K+++ TR R+ G F VDT G Sbjct: 14 IAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRITGINTTEDAQFIFVDTPGFQTRH 73 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + ++ + +N + ILF+I++ P D + + +P ++++NK+D Sbjct: 74 STALNRSLNRAVTSTLTSVDAILFVIEA-GRFGPDDQKVLDLI-PPGVPTLLIANKLDRV 131 Query: 125 IAQRNFY----EIYSL-DFKEIVEISAEH 148 + Y ++ +L +F EIV +SA+H Sbjct: 132 NDKTTLYPFMQKVSALREFTEIVPLSAKH 160 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 39/128 (30%), Positives = 67/128 (52%), Gaps = 4/128 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA+VGRPNVGKSTL+N L+G +T ++ TR ++ ++ DT G + + Sbjct: 14 IAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRITGINTTEDAQFIFVDTPGFQ--T 71 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 R + +L +++ +++ S T I+ + F D +++D + G +L NK D Sbjct: 72 RHSTAL-NRSLNRAVTSTLTSVDAILFVIEAGRFGPDDQKVLD-LIPPGVPTLLIANKLD 129 Query: 326 MVSDKLNL 333 V+DK L Sbjct: 130 RVNDKTTL 137 >gi|124026406|ref|YP_001015521.1| GTP-binding protein Era [Prochlorococcus marinus str. NATL1A] gi|123961474|gb|ABM76257.1| GTP-binding protein Era [Prochlorococcus marinus str. NATL1A] Length = 313 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 47/168 (27%), Positives = 90/168 (53%), Gaps = 6/168 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++GRPNVGKST IN+ +G +T + TR+ + + + I DT G+ KP Sbjct: 16 IALIGRPNVGKSTFINKFIGEKIAITSPIAQTTRNRLKVILTNEKSQIIFVDTPGIHKPH 75 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + L ++ V+ + +S+ + +V+ +A+ + D I++ + N V++ALNKWD Sbjct: 76 HL---LGERLVQSAKRSIGDVDAVLVIFEASHSPGRGDAFILNLIRNLKIPVIVALNKWD 132 Query: 326 MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 +++ L+ +++ R K + + + S TG+G +L+ + E Sbjct: 133 LLA--LSQIKE-RKKEYLEFLEGTNWPVFCCSALTGQGCIELISEIEE 177 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 63/122 (51%), Gaps = 9/122 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIING----VIFNIVDTAGI 60 IA++G PNVGKST N+ + +K+A+ TR+RL + I+ +IF VDT GI Sbjct: 16 IALIGRPNVGKSTFINKFIGEKIAITSPIAQTTRNRL--KVILTNEKSQIIF--VDTPGI 71 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + + +++ + +I + +L + ++ D I + +R IP+I+ NK Sbjct: 72 HKPHHL-LGERLVQSAKRSIGDVDAVLVIFEASHSPGRGDAFILNLIRNLKIPVIVALNK 130 Query: 121 MD 122 D Sbjct: 131 WD 132 >gi|157803303|ref|YP_001491852.1| GTP-binding protein Era [Rickettsia canadensis str. McKiel] gi|189037664|sp|A8EXI4|ERA_RICCK RecName: Full=GTPase Era gi|157784566|gb|ABV73067.1| GTP-binding protein Era [Rickettsia canadensis str. McKiel] Length = 295 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 48/171 (28%), Positives = 90/171 (52%), Gaps = 9/171 (5%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K I K + + ++GRPN GKSTL+NR++G + + TR ++ K+ + ++D Sbjct: 3 KQIQKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYD 62 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 T G+ +P +LE+ V+ + S+ + + ++++D+ PF+ I+D + + Sbjct: 63 TPGIFEPKG---TLEKAMVRCAWSSLHSADLVMLIIDSLKPFDDVTHNILDKLCSLNIVP 119 Query: 318 VLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLM 368 V LNK ++ S LN L+ T +N P D + IS +G+ +D L+ Sbjct: 120 VFLLNKIEIESKYLNNLKAFLT---ENHP---DSLLFPISALSGKNIDRLL 164 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 64/122 (52%), Gaps = 7/122 (5%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 ++ I+G PN GKSTL NR++ +K+++V TR + G + + DT GI + Sbjct: 10 SVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEP 69 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYD---HAITSFLRKKNIPIIIVSNK 120 K ++ K M +++ A L++ +IDS + P+D H I L NI + + NK Sbjct: 70 KG-TLEKAMVRCAWSSLHSADLVMLIIDS---LKPFDDVTHNILDKLCSLNIVPVFLLNK 125 Query: 121 MD 122 ++ Sbjct: 126 IE 127 >gi|269115231|ref|YP_003302994.1| tRNA modification GTPase [Mycoplasma hominis] gi|268322856|emb|CAX37591.1| tRNA modification GTPase [Mycoplasma hominis ATCC 23114] Length = 448 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 36/85 (42%), Positives = 57/85 (67%), Gaps = 1/85 (1%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PN GKS+L N L+ + A+V N PG TRD + G+ ING +FN++DTAGI K Sbjct: 223 VAIVGRPNTGKSSLLNSLIGSQKAIVTNIPGTTRDVVEGEFQINGFLFNLIDTAGIRQTK 282 Query: 65 NCSIAKQMNDQTELAINEAHLILFL 89 + + + ++++ AI EA +++ + Sbjct: 283 DLVESIGI-ERSKNAIKEAKIVIHM 306 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 57/211 (27%), Positives = 98/211 (46%), Gaps = 37/211 (17%) Query: 199 NISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDT 258 +I K + +A+VGRPN GKS+L+N L+G + + + G TRD V + + DT Sbjct: 216 DIYKGINVAIVGRPNTGKSSLLNSLIGSQKAIVTNIPGTTRDVVEGEFQINGFLFNLIDT 275 Query: 259 AGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVV 318 AG+R+ + ES+ +++S +++ + I + + I ++D I + + G + Sbjct: 276 AGIRQTKDLVESI---GIERSKNAIKEAKIVIHMHEPFIKENEEDQIIKE--LSKGKVYI 330 Query: 319 LALNKWD------------MVSDKLNLLQDLRTKAIKNL-------PQI----------- 348 +NK D ++S K N L +L+ +KN PQI Sbjct: 331 PVMNKQDLLNKDQYPKNMVLISSKENSLWELKNALVKNYLNIDLDDPQIIFNNRKLSLLK 390 Query: 349 -GDIYINTISGRTGEGLDDLMVSVLEINKLW 378 I INT +GL +V +L+IN+ W Sbjct: 391 QAKISINTALESLSQGLGPEVV-ILDINEAW 420 >gi|254360745|ref|ZP_04976893.1| GTP-binding protein Era [Mannheimia haemolytica PHL213] gi|153091315|gb|EDN73289.1| GTP-binding protein Era [Mannheimia haemolytica PHL213] Length = 305 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 52/183 (28%), Positives = 86/183 (46%), Gaps = 20/183 (10%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N+++ +K+++ TR R+ G + VDT G+ + Sbjct: 16 IAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIHTEDQYQAIYVDTPGLHIEE 75 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD-- 122 +I + MN AI + LI+F+++ T D + + LR P+++ NK+D Sbjct: 76 KRAINRLMNRAASSAIGDVDLIIFVVEG-TKWTEDDEMVLNKLRSAKAPVLLAINKIDNI 134 Query: 123 ----------TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPL 172 T ++Q+ DF EI+ ISA+ L + + +Q + P Sbjct: 135 KEKEELLPHITELSQK-------FDFAEILPISAQRGKNVHILQKFVRQSLRQGEHHFPE 187 Query: 173 EMI 175 E + Sbjct: 188 EYV 190 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 37/130 (28%), Positives = 66/130 (50%), Gaps = 5/130 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMR-KP 264 IA+VGRPNVGKSTL+N++LG +T ++ TR + + DT G+ + Sbjct: 16 IAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIHTEDQYQAIYVDTPGLHIEE 75 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 R L + ++ V + I +++ T + + D +++ + + V+LA+NK Sbjct: 76 KRAINRLMNRAASSAIGDV---DLIIFVVEGT-KWTEDDEMVLNKLRSAKAPVLLAINKI 131 Query: 325 DMVSDKLNLL 334 D + +K LL Sbjct: 132 DNIKEKEELL 141 >gi|150390776|ref|YP_001320825.1| GTP-binding protein Era [Alkaliphilus metalliredigens QYMF] gi|189037249|sp|A6TSJ8|ERA_ALKMQ RecName: Full=GTPase Era gi|149950638|gb|ABR49166.1| GTP-binding protein Era [Alkaliphilus metalliredigens QYMF] Length = 295 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 48/149 (32%), Positives = 81/149 (54%), Gaps = 11/149 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIV--DTAGIAD 62 + I+G PNVGKSTL N+++ +K+A++ + P TR+++ Q++ + F IV DT GI Sbjct: 8 VTIIGRPNVGKSTLMNQIIGEKIAIMSDKPQTTRNKI--QSVYSQEDFQIVFLDTPGIHK 65 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 K+ + + M + E ++LFL+D I P D I L+ P+ ++ NK+D Sbjct: 66 PKH-KLGEYMVKVARDTLKEVDVVLFLVDEGQKIGPGDRFIMEQLKDIKTPMFLIINKID 124 Query: 123 TRIAQRNFYEIYSLD-----FKEIVEISA 146 ++ Q E+ L F+ I+ ISA Sbjct: 125 -KMNQEILNEVCGLFEETGLFQRIIPISA 152 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 31/126 (24%), Positives = 65/126 (51%), Gaps = 3/126 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 + ++GRPNVGKSTL+N+++G + + TR+ + ++ ++ I DT G+ KP Sbjct: 8 VTIIGRPNVGKSTLMNQIIGEKIAIMSDKPQTTRNKIQSVYSQEDFQIVFLDTPGIHKPK 67 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + VK + +++ + + L+D D I++ + + + L +NK D Sbjct: 68 H---KLGEYMVKVARDTLKEVDVVLFLVDEGQKIGPGDRFIMEQLKDIKTPMFLIINKID 124 Query: 326 MVSDKL 331 ++ ++ Sbjct: 125 KMNQEI 130 >gi|308071639|ref|YP_003873244.1| tRNA modification GTPase trmE [Paenibacillus polymyxa E681] gi|305860918|gb|ADM72706.1| Probable tRNA modification GTPase trmE [Paenibacillus polymyxa E681] Length = 458 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 41/119 (34%), Positives = 70/119 (58%), Gaps = 3/119 (2%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T AIVG PNVGKS+L N L + + A+V + PG TRD + IN + ++DTAGI + Sbjct: 222 TTAIVGRPNVGKSSLLNTLAQGERAIVTDIPGTTRDVIEEYVTINSIPLKLLDTAGIRET 281 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + + + +++ A++EA L+L +I++ + + A+ +R + I++ NKMD Sbjct: 282 MDV-VERIGVERSRTAVSEADLLLIVINANEPLHEDEMALMEQIRGRQ--AIVIMNKMD 337 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 36/129 (27%), Positives = 71/129 (55%), Gaps = 5/129 (3%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L A+VGRPNVGKS+L+N L R + G TRD + + P+++ D Sbjct: 215 KILREGLTTAIVGRPNVGKSSLLNTLAQGERAIVTDIPGTTRDVIEEYVTINSIPLKLLD 274 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ + E + V++S +V + +++++A P + ++ +++ + G Sbjct: 275 TAGIRETMDVVERI---GVERSRTAVSEADLLLIVINANEPLHEDEMALMEQI--RGRQA 329 Query: 318 VLALNKWDM 326 ++ +NK D+ Sbjct: 330 IVIMNKMDL 338 >gi|307731534|ref|YP_003908758.1| tRNA modification GTPase TrmE [Burkholderia sp. CCGE1003] gi|307586069|gb|ADN59467.1| tRNA modification GTPase TrmE [Burkholderia sp. CCGE1003] Length = 464 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 49/160 (30%), Positives = 82/160 (51%), Gaps = 4/160 (2%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 ++ + G PNVGKS+L N L ++A+V G TRD++ I G+ +++DTAG+ D Sbjct: 228 SVVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQIEGIPLHVIDTAGLRDT 287 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD- 122 ++ + K +T I A ++L L+D++ G+T D I +P++ V NK D Sbjct: 288 ED-EVEKIGIARTWSEIERADVVLHLLDARTGMTAEDETIAKRF-PAGVPVVRVLNKTDL 345 Query: 123 TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKI 162 + + LD E V +SA+ G S L + +I Sbjct: 346 VGLPPQTRALDVDLDLSE-VRLSAKQGDGVSLLRDELLRI 384 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 55/222 (24%), Positives = 95/222 (42%), Gaps = 23/222 (10%) Query: 114 IIIVSNKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLE 173 +I S + R A R+ +S D +VE + ++ + + P E Sbjct: 142 LIEASTEAAARSAGRSLDGAFSRDIHTLVE------------EVITLRMLVEATLDFPEE 189 Query: 174 MIENNKRNEESPKENITSEGKSSVKN-------ISKPLRIAVVGRPNVGKSTLINRLLGY 226 I+ + + K E +SV + + L + + G+PNVGKS+L+N L G Sbjct: 190 EIDFLEAADARGKLARIRERLASVLAEARQGALLREGLSVVLAGQPNVGKSSLLNALAGA 249 Query: 227 NRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTC 286 + +G TRD V+ + + P+ + DTAG+R + +E+ + ++ + Sbjct: 250 ELAIVTPIAGTTRDKVAQTIQIEGIPLHVIDTAGLRDTE---DEVEKIGIARTWSEIERA 306 Query: 287 ETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVS 328 + + LLDA +D I F G VV LNK D+V Sbjct: 307 DVVLHLLDARTGMTAEDETIAKR-FPAGVPVVRVLNKTDLVG 347 >gi|320546578|ref|ZP_08040893.1| tRNA modification GTPase TrmE [Streptococcus equinus ATCC 9812] gi|320448963|gb|EFW89691.1| tRNA modification GTPase TrmE [Streptococcus equinus ATCC 9812] Length = 457 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 38/129 (29%), Positives = 75/129 (58%), Gaps = 5/129 (3%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L A++GRPNVGKS+L+N LL ++ + G TRD + N K P+++ D Sbjct: 218 KILREGLSTAIIGRPNVGKSSLLNNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLVD 277 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ + E + V++S +++ + +++L+++ P QD +++ ++ Sbjct: 278 TAGIRETDDVVEKI---GVERSKKALEEADLVLLVLNSSEPLTDQDRALLELSKDSNR-- 332 Query: 318 VLALNKWDM 326 ++ LNK D+ Sbjct: 333 IILLNKTDL 341 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 43/117 (36%), Positives = 68/117 (58%), Gaps = 3/117 (2%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+++ A+V + G TRD + I GV +VDTAGI + + Sbjct: 227 AIIGRPNVGKSSLLNNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLVDTAGIRETDD 286 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + K ++++ A+ EA L+L +++S +T D A+ + N II+ NK D Sbjct: 287 V-VEKIGVERSKKALEEADLVLLVLNSSEPLTDQDRALLELSKDSN--RIILLNKTD 340 >gi|288905822|ref|YP_003431044.1| GTP-binding protein era [Streptococcus gallolyticus UCN34] gi|306831911|ref|ZP_07465066.1| GTP-binding protein Era [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|306834025|ref|ZP_07467146.1| GTP-binding protein Era [Streptococcus bovis ATCC 700338] gi|325978857|ref|YP_004288573.1| GTP-binding protein era [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288732548|emb|CBI14120.1| GTP-binding protein era [Streptococcus gallolyticus UCN34] gi|304423813|gb|EFM26958.1| GTP-binding protein Era [Streptococcus bovis ATCC 700338] gi|304425837|gb|EFM28954.1| GTP-binding protein Era [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325178785|emb|CBZ48829.1| era, yqfH, sdgE, bex, rbaA GTP-binding protein era homolog [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 298 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 46/146 (31%), Positives = 74/146 (50%), Gaps = 5/146 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKST N ++ +K+A++ + TR+++ G + +DT GI K Sbjct: 7 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDTEQIVFIDTPGIHKPK 66 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N + M + + E +LF++ + D I L+ IP+I+V NK+D Sbjct: 67 NA-LGDFMVESAYSTLREVETVLFMVPADEKRGKGDDMIIERLKAAKIPVILVINKIDKV 125 Query: 125 IAQRNFYEI----YSLDFKEIVEISA 146 + +I +DFKEIV ISA Sbjct: 126 HPDQLLEQIDDFRSQMDFKEIVPISA 151 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 38/137 (27%), Positives = 67/137 (48%), Gaps = 5/137 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKST +N ++G + ++ TR+ + + I DT G+ KP Sbjct: 7 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDTEQIVFIDTPGIHKPK 66 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +L V+ + ++R ET + ++ A K D I++ + V+L +NK D Sbjct: 67 N---ALGDFMVESAYSTLREVETVLFMVPADEKRGKGDDMIIERLKAAKIPVILVINKID 123 Query: 326 MV--SDKLNLLQDLRTK 340 V L + D R++ Sbjct: 124 KVHPDQLLEQIDDFRSQ 140 >gi|166364450|ref|YP_001656723.1| GTP-binding protein Era [Microcystis aeruginosa NIES-843] gi|166086823|dbj|BAG01531.1| GTP-binding protein ERA homolog [Microcystis aeruginosa NIES-843] Length = 318 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 51/160 (31%), Positives = 77/160 (48%), Gaps = 6/160 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 I I+G PNVGKSTL N+LV +K+A+ TR+RL G VDT GI Sbjct: 29 IGIIGRPNVGKSTLMNQLVGQKIAITSPIAQTTRNRLRGIVTSERAQMIFVDTPGIHK-P 87 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + K + E AIN L+LF++DS + D I L K P I+ NK D + Sbjct: 88 HHELGKVLVKNAENAINSVDLVLFVVDSSNFLGSGDRYIADLLTKNQTPTILGLNKADQQ 147 Query: 125 IAQR-----NFYEIYSLDFKEIVEISAEHDLGTSELHSVI 159 R ++ + + + +++ SA G EL +++ Sbjct: 148 PEDREPLDDSYRTLAAENNWPLLKFSALEGTGIEELQNLL 187 Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 46/174 (26%), Positives = 82/174 (47%), Gaps = 6/174 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 I ++GRPNVGKSTL+N+L+G +T + TR+ + + + DT G+ KP Sbjct: 29 IGIIGRPNVGKSTLMNQLVGQKIAITSPIAQTTRNRLRGIVTSERAQMIFVDTPGIHKPH 88 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + VK + ++ + + + ++D++ D I D + +L LNK D Sbjct: 89 H---ELGKVLVKNAENAINSVDLVLFVVDSSNFLGSGDRYIADLLTKNQTPTILGLNKAD 145 Query: 326 MVSDKLNLLQD-LRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLW 378 + L D RT A +N + + + + G E L +L++ LE+ + Sbjct: 146 QQPEDREPLDDSYRTLAAENNWPL--LKFSALEGTGIEELQNLLIDSLEVGPYY 197 >gi|228470917|ref|ZP_04055762.1| tRNA modification GTPase TrmE [Porphyromonas uenonis 60-3] gi|228307314|gb|EEK16328.1| tRNA modification GTPase TrmE [Porphyromonas uenonis 60-3] Length = 470 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 35/86 (40%), Positives = 58/86 (67%), Gaps = 3/86 (3%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+GAPNVGKS+L N L++ + A+V + PG TRD + G+ I G +F ++DTAG+ + Sbjct: 220 AIIGAPNVGKSSLLNALLQHERAIVSDIPGTTRDTVEGRLTIRGTLFRLIDTAGLR--QT 277 Query: 66 CSIAKQMN-DQTELAINEAHLILFLI 90 + +Q+ +++ I+ A LIL++I Sbjct: 278 TDLVEQLGIERSYQQISSARLILWVI 303 Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 51/187 (27%), Positives = 95/187 (50%), Gaps = 17/187 (9%) Query: 195 SSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIE 254 S+ + + + + A++G PNVGKS+L+N LL + R + G TRD+V + Sbjct: 208 STGQELQQGIPTAIIGAPNVGKSSLLNALLQHERAIVSDIPGTTRDTVEGRLTIRGTLFR 267 Query: 255 IFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP----FEKQDLRIVDSV 310 + DTAG+R+ T+ +EQ +++S Q + + + ++ +P E Q L + + Sbjct: 268 LIDTAGLRQ---TTDLVEQLGIERSYQQISSARLILWVIAPPLPTWDELETQ-LGELLPL 323 Query: 311 FNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINT----ISGRTGEG--- 363 + ++L LNK D+++++ + D + L +I D T IS R +G Sbjct: 324 TSPDSTLILLLNKRDLLTER--EVTDWLSHCSDQLQRITDKRHTTPPLAISARAAQGIEA 381 Query: 364 LDDLMVS 370 L++LMV+ Sbjct: 382 LEELMVT 388 >gi|171920300|ref|ZP_02931650.1| GTP-binding protein Era [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|171902714|gb|EDT49003.1| GTP-binding protein Era [Ureaplasma parvum serovar 1 str. ATCC 27813] Length = 300 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 53/163 (32%), Positives = 90/163 (55%), Gaps = 11/163 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYG--QAIINGVIFNIVDTAGIAD 62 +AIVG PNVGKSTL N ++KKK++++ N P TR+ + + + +IF DT G + Sbjct: 8 VAIVGKPNVGKSTLINAIMKKKVSIISNKPQTTRNAVKEIYEDDESAIIF--TDTPGFHE 65 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLR---KKNIPIIIVSN 119 N + +N + E++ EA++ILF+ + D I + ++ K+NI ++I Sbjct: 66 PSN-KLDLFLNHEIEISYKEANVILFVTTMDKELDANDFEIINLIKEANKENIILVISKA 124 Query: 120 KM---DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVI 159 +M +I +R + L FK++V+ISA H + +L S I Sbjct: 125 EMAKNQDQIDERIHFLKKHLVFKDVVQISALHAINIDKLISTI 167 Score = 43.5 bits (101), Expect = 0.083, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 34/60 (56%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VG+PNVGKSTLIN ++ + ++ TR++V + I DT G +PS Sbjct: 8 VAIVGKPNVGKSTLINAIMKKKVSIISNKPQTTRNAVKEIYEDDESAIIFTDTPGFHEPS 67 >gi|298209078|ref|YP_003717257.1| putative tRNA modification GTPase [Croceibacter atlanticus HTCC2559] gi|83849005|gb|EAP86874.1| putative tRNA modification GTPase [Croceibacter atlanticus HTCC2559] Length = 469 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 54/178 (30%), Positives = 90/178 (50%), Gaps = 23/178 (12%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA+VG PNVGKSTL+N LL R + +G TRD++ + DTAG+R+ Sbjct: 224 IAIVGEPNVGKSTLLNALLNEERAIVSDIAGTTRDTIEDEISIGGIGFRFIDTAGIRETK 283 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDAT--------IPFEKQDLRIVDSVFNTGHAV 317 + E L +KK+ + + + T+ L DA+ I K ++ + + F + Sbjct: 284 DVIEGL---GIKKTFEKIEKSQVTVYLFDASLIKNDAIRIKNLKVEVEKIKNRFPQKPLL 340 Query: 318 VLALNKWDMVSDK--LNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 V+A NK D + D NL+ +L+ P ++ TIS +TG G+++L ++L+ Sbjct: 341 VIA-NKIDALLDSEIQNLIDNLK-------PHT--THLLTISAKTGLGIEELQTTLLD 388 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 51/172 (29%), Positives = 85/172 (49%), Gaps = 24/172 (13%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N L+ ++ A+V + G TRD + + I G+ F +DTAGI + K Sbjct: 224 IAIVGEPNVGKSTLLNALLNEERAIVSDIAGTTRDTIEDEISIGGIGFRFIDTAGIRETK 283 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNI------------ 112 + + E I ++ + ++L D A + D +R KN+ Sbjct: 284 DVIEGLGIKKTFE-KIEKSQVTVYLFD--ASLIKNDA-----IRIKNLKVEVEKIKNRFP 335 Query: 113 --PIIIVSNKMDTRIAQ--RNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 P+++++NK+D + +N + ++ ISA+ LG EL + + Sbjct: 336 QKPLLVIANKIDALLDSEIQNLIDNLKPHTTHLLTISAKTGLGIEELQTTLL 387 >gi|288905136|ref|YP_003430358.1| tRNA modification GTPase TrmE:Small GTP-binding protein domain [Streptococcus gallolyticus UCN34] gi|288731862|emb|CBI13427.1| tRNA modification GTPase TrmE:Small GTP-binding protein domain [Streptococcus gallolyticus UCN34] Length = 457 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 41/140 (29%), Positives = 79/140 (56%), Gaps = 6/140 (4%) Query: 187 ENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISW 246 EN+ K K + + L A++GRPNVGKS+L+N LL ++ + G TRD + Sbjct: 208 ENLLRTAKRG-KILREGLSTAIIGRPNVGKSSLLNNLLREDKAIVTDIEGTTRDVIEEYV 266 Query: 247 NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRI 306 N K P+++ DTAG+R+ + E + V++S +++ + +++L+++ P QD + Sbjct: 267 NIKGVPLKLVDTAGIRETDDVVEKI---GVERSKKALEEADLVLLVLNSSEPLTNQDRAL 323 Query: 307 VDSVFNTGHAVVLALNKWDM 326 ++ ++ ++ LNK D+ Sbjct: 324 LELSKDSNR--IILLNKTDL 341 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 43/117 (36%), Positives = 68/117 (58%), Gaps = 3/117 (2%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+++ A+V + G TRD + I GV +VDTAGI + + Sbjct: 227 AIIGRPNVGKSSLLNNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLVDTAGIRETDD 286 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + K ++++ A+ EA L+L +++S +T D A+ + N II+ NK D Sbjct: 287 V-VEKIGVERSKKALEEADLVLLVLNSSEPLTNQDRALLELSKDSN--RIILLNKTD 340 >gi|306831214|ref|ZP_07464375.1| tRNA modification GTPase TrmE [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304426780|gb|EFM29891.1| tRNA modification GTPase TrmE [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 457 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 41/140 (29%), Positives = 79/140 (56%), Gaps = 6/140 (4%) Query: 187 ENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISW 246 EN+ K K + + L A++GRPNVGKS+L+N LL ++ + G TRD + Sbjct: 208 ENLLRTAKRG-KILREGLSTAIIGRPNVGKSSLLNNLLREDKAIVTDIEGTTRDVIEEYV 266 Query: 247 NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRI 306 N K P+++ DTAG+R+ + E + V++S +++ + +++L+++ P QD + Sbjct: 267 NIKGVPLKLVDTAGIRETDDVVEKI---GVERSKKALEEADLVLLVLNSSEPLTNQDRAL 323 Query: 307 VDSVFNTGHAVVLALNKWDM 326 ++ ++ ++ LNK D+ Sbjct: 324 LELSKDSNR--IILLNKTDL 341 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 43/117 (36%), Positives = 68/117 (58%), Gaps = 3/117 (2%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+++ A+V + G TRD + I GV +VDTAGI + + Sbjct: 227 AIIGRPNVGKSSLLNNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLVDTAGIRETDD 286 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + K ++++ A+ EA L+L +++S +T D A+ + N II+ NK D Sbjct: 287 V-VEKIGVERSKKALEEADLVLLVLNSSEPLTNQDRALLELSKDSN--RIILLNKTD 340 >gi|254252844|ref|ZP_04946162.1| Small GTP-binding protein domain [Burkholderia dolosa AUO158] gi|124895453|gb|EAY69333.1| Small GTP-binding protein domain [Burkholderia dolosa AUO158] Length = 299 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 45/149 (30%), Positives = 77/149 (51%), Gaps = 7/149 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N LV +K+++ TR R+ G I+ F VDT G Sbjct: 14 IAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRITGINTIDDAQFVFVDTPGFQTRH 73 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + ++ + +N + +ILF+I++ P D + + +P ++++NK+D Sbjct: 74 STALNRSLNRAVTSTLTSVDVILFVIEA-GRFGPDDQKVLDLI-PPGMPTLLITNKIDRV 131 Query: 125 IAQRNFY----EIYSL-DFKEIVEISAEH 148 + Y ++ +L +F E+V +SA+ Sbjct: 132 SDKTTLYPFMQQMSALREFAELVPLSAKQ 160 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 40/128 (31%), Positives = 66/128 (51%), Gaps = 4/128 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA+VGRPNVGKSTL+N L+G +T ++ TR ++ + DT G + + Sbjct: 14 IAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRITGINTIDDAQFVFVDTPGFQ--T 71 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 R + +L +++ +++ S T I+ + F D +++D + G +L NK D Sbjct: 72 RHSTAL-NRSLNRAVTSTLTSVDVILFVIEAGRFGPDDQKVLD-LIPPGMPTLLITNKID 129 Query: 326 MVSDKLNL 333 VSDK L Sbjct: 130 RVSDKTTL 137 >gi|310644871|ref|YP_003949630.1| tRNA modification gtpase mnme [Paenibacillus polymyxa SC2] gi|309249822|gb|ADO59389.1| tRNA modification GTPase mnmE [Paenibacillus polymyxa SC2] Length = 458 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 41/119 (34%), Positives = 70/119 (58%), Gaps = 3/119 (2%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T AIVG PNVGKS+L N L + + A+V + PG TRD + IN + ++DTAGI + Sbjct: 222 TTAIVGRPNVGKSSLLNTLAQGERAIVTDIPGTTRDVIEEYVTINNIPLKLLDTAGIRET 281 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + + + +++ A++EA L+L +I++ + + A+ +R + I++ NKMD Sbjct: 282 MDV-VERIGVERSRTAVSEADLLLIVINANEPLHEDEMALMEQIRGRQ--AIVIMNKMD 337 Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 37/129 (28%), Positives = 71/129 (55%), Gaps = 5/129 (3%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L A+VGRPNVGKS+L+N L R + G TRD + N P+++ D Sbjct: 215 KILREGLTTAIVGRPNVGKSSLLNTLAQGERAIVTDIPGTTRDVIEEYVTINNIPLKLLD 274 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ + E + V++S +V + +++++A P + ++ +++ + G Sbjct: 275 TAGIRETMDVVERI---GVERSRTAVSEADLLLIVINANEPLHEDEMALMEQI--RGRQA 329 Query: 318 VLALNKWDM 326 ++ +NK D+ Sbjct: 330 IVIMNKMDL 338 >gi|304437938|ref|ZP_07397884.1| tRNA modification GTPase TrmE [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304369078|gb|EFM22757.1| tRNA modification GTPase TrmE [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 491 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 35/111 (31%), Positives = 59/111 (53%), Gaps = 3/111 (2%) Query: 193 GKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHP 252 G + + + ++ +VGRPNVGKS+L+N LLG R + G TRD + + P Sbjct: 243 GADTGRVLRDGVKTVIVGRPNVGKSSLLNALLGMERAIVTDVPGTTRDVIEEEISVAGIP 302 Query: 253 IEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + + DTAG+R +++EQ V ++ Q + E + + DA+ P +D Sbjct: 303 LRLLDTAGLRAAE---DAVEQIGVARTEQHLMDAELILAVFDASEPLTAED 350 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 55/186 (29%), Positives = 95/186 (51%), Gaps = 16/186 (8%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PNVGKS+L N L+ + A+V + PG TRD + + + G+ ++DTAG+ ++ Sbjct: 258 IVGRPNVGKSSLLNALLGMERAIVTDVPGTTRDVIEEEISVAGIPLRLLDTAGLRAAED- 316 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD--TR 124 ++ + +TE + +A LIL + D+ +T DHA+ + L II+ +K D + Sbjct: 317 AVEQIGVARTEQHLMDAELILAVFDASEPLTAEDHALLARLSAAAADTIILCSKEDRPSV 376 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSEL-HSVIFKIFKQK-------YPNHPLEMIE 176 ++ +F + + ++ ISA+ G L + I +Q+ PN E IE Sbjct: 377 LSAEDFAAVAA----PVLRISAQEGTGLDALREEIAAHIVRQEGDLSDGALPNKERE-IE 431 Query: 177 NNKRNE 182 +R E Sbjct: 432 ALRRAE 437 >gi|292489089|ref|YP_003531976.1| GTP-binding protein Era [Erwinia amylovora CFBP1430] gi|292900213|ref|YP_003539582.1| GTP-binding protein [Erwinia amylovora ATCC 49946] gi|291200061|emb|CBJ47187.1| GTP-binding protein [Erwinia amylovora ATCC 49946] gi|291554523|emb|CBA22092.1| GTP-binding protein Era [Erwinia amylovora CFBP1430] gi|312173247|emb|CBX81502.1| GTP-binding protein Era [Erwinia amylovora ATCC BAA-2158] Length = 301 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 49/179 (27%), Positives = 89/179 (49%), Gaps = 8/179 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N+L+ +K+++ P TR R+ G VDT G+ + Sbjct: 11 IAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGIHTEGQYQAIYVDTPGLHMEE 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN +I + +++F+++ T D + + L+ +P+++ NK+D Sbjct: 71 KRAINRLMNRAASSSIGDVEMVIFVVEGTR-WTADDEMVLNKLKDGKVPVLLAINKVDN- 128 Query: 125 IAQRNF------YEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 I ++ + ++F ++V ISAE + S++ K Q + P + I + Sbjct: 129 ITDKSILLPHLQFLGQQMNFMDVVPISAEKGSNVDTIASIVRKRLPQAEHHFPEDYITD 187 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 39/133 (29%), Positives = 68/133 (51%), Gaps = 3/133 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA+VGRPNVGKSTL+N+LLG +T + TR + + DT G+ Sbjct: 11 IAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGIHTEGQYQAIYVDTPGLHMEE 70 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + ++ + + + S+ E I +++ T + D +++ + + V+LA+NK D Sbjct: 71 K--RAINRLMNRAASSSIGDVEMVIFVVEGT-RWTADDEMVLNKLKDGKVPVLLAINKVD 127 Query: 326 MVSDKLNLLQDLR 338 ++DK LL L+ Sbjct: 128 NITDKSILLPHLQ 140 >gi|325978110|ref|YP_004287826.1| tRNA modification GTPase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325178038|emb|CBZ48082.1| tRNA modification GTPase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 457 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 41/140 (29%), Positives = 79/140 (56%), Gaps = 6/140 (4%) Query: 187 ENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISW 246 EN+ K K + + L A++GRPNVGKS+L+N LL ++ + G TRD + Sbjct: 208 ENLLRTAKRG-KILREGLSTAIIGRPNVGKSSLLNNLLREDKAIVTDIEGTTRDVIEEYV 266 Query: 247 NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRI 306 N K P+++ DTAG+R+ + E + V++S +++ + +++L+++ P QD + Sbjct: 267 NIKGVPLKLVDTAGIRETDDVVEKI---GVERSKKALEEADLVLLVLNSSEPLTNQDRAL 323 Query: 307 VDSVFNTGHAVVLALNKWDM 326 ++ ++ ++ LNK D+ Sbjct: 324 LELSKDSNR--IILLNKTDL 341 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 43/117 (36%), Positives = 68/117 (58%), Gaps = 3/117 (2%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+++ A+V + G TRD + I GV +VDTAGI + + Sbjct: 227 AIIGRPNVGKSSLLNNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLVDTAGIRETDD 286 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + K ++++ A+ EA L+L +++S +T D A+ + N II+ NK D Sbjct: 287 V-VEKIGVERSKKALEEADLVLLVLNSSEPLTNQDRALLELSKDSN--RIILLNKTD 340 >gi|253988787|ref|YP_003040143.1| GTP-binding protein Era [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253780237|emb|CAQ83398.1| gtp-binding protein era [Photorhabdus asymbiotica] Length = 302 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 48/178 (26%), Positives = 87/178 (48%), Gaps = 6/178 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N+L+ +K+++ P TR R+ G VDT G+ + Sbjct: 11 VAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGIHTEGTYQTIYVDTPGLHIEE 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN +I + L++F+++ TP D + + LR P+++ NK+D Sbjct: 71 KRAINRLMNRAASSSIGDVELVIFVVEG-THWTPDDEMVLNKLRNLRCPVLLAINKVDNV 129 Query: 125 IAQRNF-----YEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 I + + ++F ++V +SAE + + ++ Q + P + I + Sbjct: 130 IDKAILLPHIGFLSKQMNFLDVVPMSAEKGMNVDTIAKIVRGHMPQATHHFPEDYITD 187 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 42/130 (32%), Positives = 64/130 (49%), Gaps = 5/130 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMR-KP 264 +A+VGRPNVGKSTL+N+LLG +T + TR + + DT G+ + Sbjct: 11 VAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGIHTEGTYQTIYVDTPGLHIEE 70 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 R L + S+ V E I +++ T + D +++ + N V+LA+NK Sbjct: 71 KRAINRLMNRAASSSIGDV---ELVIFVVEGT-HWTPDDEMVLNKLRNLRCPVLLAINKV 126 Query: 325 DMVSDKLNLL 334 D V DK LL Sbjct: 127 DNVIDKAILL 136 >gi|168494446|ref|ZP_02718589.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae CDC3059-06] gi|221231770|ref|YP_002510922.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae ATCC 700669] gi|225854518|ref|YP_002736030.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae JJA] gi|183575548|gb|EDT96076.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae CDC3059-06] gi|220674230|emb|CAR68765.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae ATCC 700669] gi|225724002|gb|ACO19855.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae JJA] gi|332075364|gb|EGI85833.1| tRNA modification GTPase TrmE [Streptococcus pneumoniae GA41301] Length = 457 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 73/120 (60%), Gaps = 5/120 (4%) Query: 207 AVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSR 266 A++GRPNVGKS+L+N LL ++ + +G TRD + N P+++ DTAG+R+ Sbjct: 227 AIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDD 286 Query: 267 ITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 I +EQ V++S ++++ + +++L+A+ QD ++++ +T ++ LNK D+ Sbjct: 287 I---VEQIGVERSKKALKEADLVLLVLNASEQLTAQDRQLLEISQDTNR--IILLNKTDL 341 Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 42/118 (35%), Positives = 70/118 (59%), Gaps = 5/118 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+++ A+V + G TRD + INGV ++DTAGI + + Sbjct: 227 AIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDD 286 Query: 66 CSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 I +Q+ ++++ A+ EA L+L ++++ +T D + + N II+ NK D Sbjct: 287 --IVEQIGVERSKKALKEADLVLLVLNASEQLTAQDRQLLEISQDTN--RIILLNKTD 340 >gi|303256375|ref|ZP_07342389.1| tRNA modification GTPase TrmE [Burkholderiales bacterium 1_1_47] gi|331001498|ref|ZP_08325116.1| tRNA modification GTPase TrmE [Parasutterella excrementihominis YIT 11859] gi|302859866|gb|EFL82943.1| tRNA modification GTPase TrmE [Burkholderiales bacterium 1_1_47] gi|329568227|gb|EGG50044.1| tRNA modification GTPase TrmE [Parasutterella excrementihominis YIT 11859] Length = 463 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 89/161 (55%), Gaps = 6/161 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG NVGKS+L N L +++A+V + G TRD++ II+GV F+ VDTAGI + + Sbjct: 227 VALVGETNVGKSSLLNYLAGEEIAIVSDIAGTTRDKIQTDLIISGVPFHFVDTAGIRETE 286 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFL---RKKNIPIIIVSNKM 121 + I + ++T+ I++A +IL + D + ++ + L + K++PII V NK+ Sbjct: 287 D-RIEQIGIERTKQEISKADVILEIRDIRDQQNKNKDSMQTALKMIKGKDVPIITVLNKV 345 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKI 162 D + + I+E SA G EL S + K+ Sbjct: 346 D--LISTPLPNTKDVSRGTIIETSAVTGKGMQELKSELLKL 384 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 49/181 (27%), Positives = 80/181 (44%), Gaps = 31/181 (17%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 LR+A+VG NVGKS+L+N L G + +G TRD + P DTAG+R+ Sbjct: 225 LRVALVGETNVGKSSLLNYLAGEEIAIVSDIAGTTRDKIQTDLIISGVPFHFVDTAGIRE 284 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNT-----GHAV- 317 + +EQ ++++ Q + + + + D Q + DS+ G V Sbjct: 285 TE---DRIEQIGIERTKQEISKADVILEIRD----IRDQQNKNKDSMQTALKMIKGKDVP 337 Query: 318 -VLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTI---SGRTGEGLDDLMVSVLE 373 + LNK D++S LP D+ TI S TG+G+ +L +L+ Sbjct: 338 IITVLNKVDLISTP--------------LPNTKDVSRGTIIETSAVTGKGMQELKSELLK 383 Query: 374 I 374 + Sbjct: 384 L 384 >gi|83589464|ref|YP_429473.1| GTP-binding protein Era [Moorella thermoacetica ATCC 39073] gi|83572378|gb|ABC18930.1| GTP-binding protein Era [Moorella thermoacetica ATCC 39073] Length = 301 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 44/148 (29%), Positives = 80/148 (54%), Gaps = 11/148 (7%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIV--DTAGIADG 63 ++G PN GKSTL NRLV +K+A++ + P TR+++ G ++ + IV DT GI Sbjct: 11 GLIGRPNAGKSTLLNRLVGRKVAIMSDKPQTTRNKILG--VLTATAYQIVFLDTPGIHKP 68 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD- 122 ++ + + M + E ++L+++D+ + I S L++ ++P+I++ NKMD Sbjct: 69 RH-QLGEYMVAVARNTLAEVDVVLYVVDAAEEPGAGEEYIISRLKEVDVPVILILNKMDL 127 Query: 123 ----TRIAQRNFYEIYSLDFKEIVEISA 146 T I + F+ LD + +SA Sbjct: 128 VAGETLIRREEFFRA-RLDVAAVRAVSA 154 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 33/124 (26%), Positives = 58/124 (46%), Gaps = 3/124 (2%) Query: 207 AVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSR 266 ++GRPN GKSTL+NRL+G + + TR+ + + I DT G+ KP Sbjct: 11 GLIGRPNAGKSTLLNRLVGRKVAIMSDKPQTTRNKILGVLTATAYQIVFLDTPGIHKPR- 69 Query: 267 ITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 L + V + ++ + + ++DA + I+ + V+L LNK D+ Sbjct: 70 --HQLGEYMVAVARNTLAEVDVVLYVVDAAEEPGAGEEYIISRLKEVDVPVILILNKMDL 127 Query: 327 VSDK 330 V+ + Sbjct: 128 VAGE 131 >gi|323705546|ref|ZP_08117120.1| small GTP-binding protein [Thermoanaerobacterium xylanolyticum LX-11] gi|323535023|gb|EGB24800.1| small GTP-binding protein [Thermoanaerobacterium xylanolyticum LX-11] Length = 411 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 57/179 (31%), Positives = 89/179 (49%), Gaps = 14/179 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLY-GQAIINGVIFNIVDTAGIADG 63 I+I G N GKS++ N L + +A+V + G T D ++ I+ I+DTAG+ D Sbjct: 12 ISIFGRRNAGKSSIINALTNQNIAIVSDVAGTTTDPVHKAMEILPIGPVVIIDTAGLDD- 70 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + + +T +N L L +ID G + ++ I +R+KNIP++ V NK D Sbjct: 71 -TGELGELRVKKTYEVLNRTDLALLVIDGMVGPSKFEEEILDKIREKNIPVVGVLNKAD- 128 Query: 124 RIAQRNFYEIYSLDFK-----EIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 +AQ NF I D++ E+VE SA G EL I K K Y + L ++ + Sbjct: 129 -LAQFNF--IQKADWEKRLKLELVETSANSGYGIEELKRQIIK--KAPYDDKELSLVSD 182 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/133 (29%), Positives = 64/133 (48%), Gaps = 7/133 (5%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWN-WKNHPIEIFDTAGMR 262 L I++ GR N GKS++IN L N + +G T D V + P+ I DTAG+ Sbjct: 10 LHISIFGRRNAGKSSIINALTNQNIAIVSDVAGTTTDPVHKAMEILPIGPVVIIDTAGLD 69 Query: 263 KPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALN 322 T L + VKK+ + + + ++++D + K + I+D + VV LN Sbjct: 70 D----TGELGELRVKKTYEVLNRTDLALLVIDGMVGPSKFEEEILDKIREKNIPVVGVLN 125 Query: 323 KWDMVSDKLNLLQ 335 K D+ + N +Q Sbjct: 126 KADLA--QFNFIQ 136 >gi|317418209|emb|CBM95518.1| GTP-binding protein-like protein [Helicobacter cetorum] Length = 172 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 85/161 (52%), Gaps = 8/161 (4%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 TIAI+G PNVGKS+LFNRL K+++A+ + G TRD + +N ++DT G+ Sbjct: 9 TIAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINRRKIFLNESEVELLDTGGM--D 66 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSNKM 121 KN ++K++ A + LIL+++D K+ P D I F + K N +V NK+ Sbjct: 67 KNVVLSKEIKTFNLKAAQMSDLILYVVDGKS--IPDDDDIKLFREIFKINPNCFLVINKI 124 Query: 122 DT-RIAQRNF-YEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 D R +R + + + + IS H+ G + L + I Sbjct: 125 DNDREKERAYAFASFGVSSHRSFNISVSHNRGINTLINAIL 165 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 62/121 (51%), Gaps = 6/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD +E+ DT GM K Sbjct: 10 IAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINRRKIFLNESEVELLDTGGMDK-- 67 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 + S E KT ++++ + + + ++D +IP + D+++ +F L +NK Sbjct: 68 NVVLSKEIKTF--NLKAAQMSDLILYVVDGKSIP-DDDDIKLFREIFKINPNCFLVINKI 124 Query: 325 D 325 D Sbjct: 125 D 125 >gi|270292694|ref|ZP_06198905.1| thiophene and furan oxidation protein ThdF [Streptococcus sp. M143] gi|270278673|gb|EFA24519.1| thiophene and furan oxidation protein ThdF [Streptococcus sp. M143] Length = 475 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 73/120 (60%), Gaps = 5/120 (4%) Query: 207 AVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSR 266 A++GRPNVGKS+L+N LL ++ + +G TRD + N P+++ DTAG+R+ Sbjct: 245 AIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDD 304 Query: 267 ITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 I +EQ V++S ++++ + +++L+A+ QD ++++ +T ++ LNK D+ Sbjct: 305 I---VEQIGVERSKKALKEADLVLLVLNASEQLTAQDRQLLEISQDTNR--IILLNKTDL 359 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 42/118 (35%), Positives = 70/118 (59%), Gaps = 5/118 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+++ A+V + G TRD + INGV ++DTAGI + + Sbjct: 245 AIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDD 304 Query: 66 CSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 I +Q+ ++++ A+ EA L+L ++++ +T D + + N II+ NK D Sbjct: 305 --IVEQIGVERSKKALKEADLVLLVLNASEQLTAQDRQLLEISQDTN--RIILLNKTD 358 >gi|255068623|ref|ZP_05320478.1| tRNA modification GTPase TrmE [Neisseria sicca ATCC 29256] gi|255047121|gb|EET42585.1| tRNA modification GTPase TrmE [Neisseria sicca ATCC 29256] Length = 454 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 56/207 (27%), Positives = 103/207 (49%), Gaps = 21/207 (10%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + + + +VG PNVGKS+L+N L G + + +G TRD+V P+ I DTA Sbjct: 214 LREGMNVVLVGAPNVGKSSLLNALAGDDIAIVTDIAGTTRDTVREQITLDGVPVHIIDTA 273 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R+ + +EQ +++S ++V + ++L+D + I++S G + Sbjct: 274 GLRETDDV---VEQIGIERSRKAVSEADVALILIDPREGVNAKTQAILNS-LPEGLKKIE 329 Query: 320 ALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVL------- 372 NK D+ + + + D L Q G + ++S +TG GLD L ++L Sbjct: 330 IHNKADLTGEPVAVRSD-------GLAQTGAETVISLSAKTGAGLDLLKHALLQEVGWQG 382 Query: 373 EINKLWKTRITTSYLNSWLQ-KTQLQN 398 E L+ R + +LN+ + +T+L+N Sbjct: 383 ESESLFLAR--SRHLNALHEAETELEN 407 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 42/119 (35%), Positives = 71/119 (59%), Gaps = 4/119 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + +VGAPNVGKS+L N L +A+V + G TRD + Q ++GV +I+DTAG+ + Sbjct: 220 VVLVGAPNVGKSSLLNALAGDDIAIVTDIAGTTRDTVREQITLDGVPVHIIDTAGLRETD 279 Query: 65 NCSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + + +Q+ +++ A++EA + L LID + G+ AI + L + + I + NK D Sbjct: 280 D--VVEQIGIERSRKAVSEADVALILIDPREGVNAKTQAILNSL-PEGLKKIEIHNKAD 335 >gi|219850626|ref|YP_002465059.1| GTP-binding protein Era [Chloroflexus aggregans DSM 9485] gi|219544885|gb|ACL26623.1| GTP-binding protein Era [Chloroflexus aggregans DSM 9485] Length = 468 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 54/182 (29%), Positives = 88/182 (48%), Gaps = 5/182 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTL N L+ +K+A+V P TR + G G +DT GI + Sbjct: 178 VALVGKPNVGKSTLLNALLGEKVAIVSPRPQTTRVPVRGILSRPGEQIIFIDTPGIHE-P 236 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N + K M + E + A +I F++D + D I +++ ++V NK+D + Sbjct: 237 NHRLGKLMVELAERTLPNADVICFMVDISQPPSRLDRTIAREVQRARGHKLLVLNKVDQK 296 Query: 125 IAQ--RNFYEIYSL--DFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 Q N+ Y +++ + ISA LG + L S I + P +PL+ I + Sbjct: 297 PRQPGANYLPAYRELGEWEMEIAISARRRLGLTALLSEIGRRLPSGPPLYPLDQITDQTE 356 Query: 181 NE 182 + Sbjct: 357 QQ 358 Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 57/120 (47%), Gaps = 3/120 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VG+PNVGKSTL+N LLG + + TR V + I DT G+ +P+ Sbjct: 178 VALVGKPNVGKSTLLNALLGEKVAIVSPRPQTTRVPVRGILSRPGEQIIFIDTPGIHEPN 237 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + V+ + +++ + ++D + P + D I V +L LNK D Sbjct: 238 H---RLGKLMVELAERTLPNADVICFMVDISQPPSRLDRTIAREVQRARGHKLLVLNKVD 294 >gi|118444749|ref|YP_878552.1| GTP-binding protein Era [Clostridium novyi NT] gi|189037263|sp|A0Q1Q0|ERA_CLONN RecName: Full=GTPase Era gi|118135205|gb|ABK62249.1| GTP-binding protein Era [Clostridium novyi NT] Length = 294 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 50/176 (28%), Positives = 86/176 (48%), Gaps = 7/176 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 I+I+G PNVGKSTL N ++ +K+++V P TR+ + + +DT GI + Sbjct: 7 ISIIGRPNVGKSTLTNEILGEKLSIVSCRPQTTRNNIRAVLTRDDYQLVFLDTPGIHKPR 66 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 + + + M E + +E LI+F+ + I+ D I L+ P+ +V NK+D Sbjct: 67 H-KLGEYMVKAAETSTDEVDLIVFITTPEGEISKGDELILEGLKNSKKPVFLVINKIDEN 125 Query: 124 --RIAQRNFYEIYS--LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 + + + YS +DF EI+ ISA L ++ K + +P +MI Sbjct: 126 PQELVAKTLKQ-YSEYMDFAEIIPISARKSKNVDTLLELMIKYMPEGPKYYPEDMI 180 Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 74/164 (45%), Gaps = 10/164 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 I+++GRPNVGKSTL N +LG + + TR+++ ++ + DT G+ KP Sbjct: 7 ISIIGRPNVGKSTLTNEILGEKLSIVSCRPQTTRNNIRAVLTRDDYQLVFLDTPGIHKPR 66 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + VK + S + + + K D I++ + N+ V L +NK D Sbjct: 67 H---KLGEYMVKAAETSTDEVDLIVFITTPEGEISKGDELILEGLKNSKKPVFLVINKID 123 Query: 326 MVSDKLNLLQDLRTKAIKNLPQIGDIY-INTISGRTGEGLDDLM 368 Q+L K +K + D I IS R + +D L+ Sbjct: 124 ENP------QELVAKTLKQYSEYMDFAEIIPISARKSKNVDTLL 161 >gi|326573502|gb|EGE23468.1| tRNA modification GTPase TrmE [Moraxella catarrhalis O35E] Length = 466 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 49/175 (28%), Positives = 86/175 (49%), Gaps = 23/175 (13%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 + + + G+PN GKS+L+NRL G R + +G TRD++ + + + DTAG+RK Sbjct: 221 VHVVLAGKPNAGKSSLLNRLSGTERAIVTEIAGTTRDTLEETLILNGLTVHLTDTAGLRK 280 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTG--------- 314 + +E+ +K++ ++R + +++ D T E L + D +F G Sbjct: 281 TD---DHVEKIGIKRAFDAIRQADVLMMVYDVTT--ETDPLALADQLFCEGVTEDVGDII 335 Query: 315 -HAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLM 368 ++L NK D++ K L TK+ L +Y +S TG GLD+L+ Sbjct: 336 RQKLILVANKSDLLISKPVLQVSCETKSAPKL-----VY---VSCETGVGLDELI 382 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 54/191 (28%), Positives = 86/191 (45%), Gaps = 40/191 (20%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + + G PN GKS+L NRL + A+V G TRD L I+NG+ ++ DTAG+ Sbjct: 223 VVLAGKPNAGKSSLLNRLSGTERAIVTEIAGTTRDTLEETLILNGLTVHLTDTAGL---- 278 Query: 65 NCSIAKQMNDQTEL--------AINEAHLILFLIDSKAGITPYDHA-----------ITS 105 ++ +D E AI +A +++ + D P A + Sbjct: 279 -----RKTDDHVEKIGIKRAFDAIRQADVLMMVYDVTTETDPLALADQLFCEGVTEDVGD 333 Query: 106 FLRKKNIPIIIVSNKMDTRIAQRNFYEIYSLDFK---EIVEISAEHDLGTSELHSVIFKI 162 +R+K +I+V+NK D I++ S + K ++V +S E +G EL +I Sbjct: 334 IIRQK---LILVANKSDLLISKPVLQ--VSCETKSAPKLVYVSCETGVGLDEL----IEI 384 Query: 163 FKQKYPNHPLE 173 QK HP E Sbjct: 385 LTQKVGFHPPE 395 >gi|189218144|ref|YP_001938786.1| tRNA modification GTPase, TrmE [Methylacidiphilum infernorum V4] gi|189185002|gb|ACD82187.1| tRNA modification GTPase, TrmE [Methylacidiphilum infernorum V4] Length = 441 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 50/167 (29%), Positives = 83/167 (49%), Gaps = 16/167 (9%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAG--IA 61 TI + G+PNVGKS+LFN L+K+ A+V HPG TRD + + I+ + IVDTAG +A Sbjct: 216 TIVLAGSPNVGKSSLFNALLKENRAIVSPHPGTTRDTIEAECRISSFLVKIVDTAGQRVA 275 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 D + I + + + A+ LIL L+ + + + + ++ +I +++K Sbjct: 276 DDQ---IEAEGIRRAQEAVKRGDLILHLVSAPDDPSTDPYVLPQLQAQQK--VIAIASKA 330 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYP 168 D I N K+ +S +G EL I K+ + +P Sbjct: 331 DLGIHPAN---------KDKHALSIVTGMGLEELEEKIKKLLESFFP 368 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 3/92 (3%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 L I + G PNVGKS+L N LL NR + G TRD++ + ++I DTAG R Sbjct: 215 LTIVLAGSPNVGKSSLFNALLKENRAIVSPHPGTTRDTIEAECRISSFLVKIVDTAGQRV 274 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDA 295 + +E + ++++ ++V+ + + L+ A Sbjct: 275 AD---DQIEAEGIRRAQEAVKRGDLILHLVSA 303 >gi|171780162|ref|ZP_02921066.1| hypothetical protein STRINF_01950 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171281510|gb|EDT46945.1| hypothetical protein STRINF_01950 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 298 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 46/146 (31%), Positives = 75/146 (51%), Gaps = 5/146 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKST N ++ +K+A++ + TR+++ G + +DT GI K Sbjct: 7 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDTEQIVFIDTPGIHKPK 66 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 ++ M + + E +LF++ + D I L+ NIP+I+V NK+D Sbjct: 67 -TALGDFMVESAYSTLREVDTVLFMVPADEKRGKGDDMIIERLKAANIPVILVINKIDKV 125 Query: 125 IAQRNFYEI----YSLDFKEIVEISA 146 + +I +DFKEIV ISA Sbjct: 126 HPDQLLEQIDDFRSQMDFKEIVPISA 151 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/137 (27%), Positives = 67/137 (48%), Gaps = 5/137 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKST +N ++G + ++ TR+ + + I DT G+ KP Sbjct: 7 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDTEQIVFIDTPGIHKPK 66 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +L V+ + ++R +T + ++ A K D I++ + V+L +NK D Sbjct: 67 T---ALGDFMVESAYSTLREVDTVLFMVPADEKRGKGDDMIIERLKAANIPVILVINKID 123 Query: 326 MV--SDKLNLLQDLRTK 340 V L + D R++ Sbjct: 124 KVHPDQLLEQIDDFRSQ 140 >gi|317054820|ref|YP_004103287.1| tRNA modification GTPase TrmE [Ruminococcus albus 7] gi|315447089|gb|ADU20653.1| tRNA modification GTPase TrmE [Ruminococcus albus 7] Length = 455 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 83/166 (50%), Gaps = 7/166 (4%) Query: 167 YPNHPLEMIENNKRNEESPKE-NITSEGKSSVKN---ISKPLRIAVVGRPNVGKSTLINR 222 YP L +E E K ++T + + N I + + + G+PNVGKSTL+N Sbjct: 178 YPEEDLPAVEETALRESIGKALSVTGKLIADHDNGMLIKQGIDTVIAGKPNVGKSTLMNL 237 Query: 223 LLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQS 282 LLGY+R + +G TRD + S + DTAG+R + +E+ V+ + + Sbjct: 238 LLGYDRSIVTEVAGTTRDVIEESAKLGELVFRLSDTAGIRDTE---DRVEKIGVEMAEKR 294 Query: 283 VRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVS 328 + C I + D ++ ++ D+ +++ V +G ++ LNK D+ S Sbjct: 295 LDECMFVIEVFDTSVRPDEDDIALLEKVKASGKRSLIVLNKSDLES 340 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 48/158 (30%), Positives = 79/158 (50%), Gaps = 5/158 (3%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 I G PNVGKSTL N L+ ++V G TRD + A + ++F + DTAGI D ++ Sbjct: 223 IAGKPNVGKSTLMNLLLGYDRSIVTEVAGTTRDVIEESAKLGELVFRLSDTAGIRDTED- 281 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 + K + E ++E ++ + D+ D A+ ++ +IV NK D A Sbjct: 282 RVEKIGVEMAEKRLDECMFVIEVFDTSVRPDEDDIALLEKVKASGKRSLIVLNKSDLESA 341 Query: 127 -QRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 F+ YS + IV ISA++ +++ + + KIF Sbjct: 342 VDEGFFRGYS---ENIVYISAKNRDDRAQIQAAVEKIF 376 >gi|294011701|ref|YP_003545161.1| GTP-binding protein Era [Sphingobium japonicum UT26S] gi|292675031|dbj|BAI96549.1| GTP-binding protein Era [Sphingobium japonicum UT26S] Length = 302 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 58/180 (32%), Positives = 78/180 (43%), Gaps = 13/180 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVGAPN GKSTL N LV +K+A+ TR R+ G AI +VDT GI K Sbjct: 13 IAIVGAPNAGKSTLVNALVGQKVAITSPKAQTTRTRVMGVAIEGDAQMVLVDTPGIFQPK 72 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + M A LI ++D KAG+ I L + ++ NK+D Sbjct: 73 R-RLDRAMVQAAWGGAQGADLIALVVDGKAGLGAKMEPIVGALAARPEKKWLILNKVDIA 131 Query: 125 IAQR------NFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 I ++ YE LD E +SA G EL + F + P P E+ Sbjct: 132 IKEKLLVHTQRLYE--QLDIAETFFVSAATGDGLPELKTA----FARAMPEGPWHFPEDQ 185 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 44/162 (27%), Positives = 77/162 (47%), Gaps = 8/162 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA+VG PN GKSTL+N L+G +T ++ TR V + + + DT G+ +P Sbjct: 13 IAIVGAPNAGKSTLVNALVGQKVAITSPKAQTTRTRVMGVAIEGDAQMVLVDTPGIFQPK 72 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 R L++ V+ + + + +++D + IV ++ L LNK D Sbjct: 73 R---RLDRAMVQAAWGGAQGADLIALVVDGKAGLGAKMEPIVGALAARPEKKWLILNKVD 129 Query: 326 MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDL 367 ++ K LL + T+ + I + + +S TG+GL +L Sbjct: 130 -IAIKEKLL--VHTQRLYEQLDIAETFF--VSAATGDGLPEL 166 >gi|293572712|ref|ZP_06683676.1| tRNA modification GTPase TrmE [Enterococcus faecium E980] gi|291607204|gb|EFF36562.1| tRNA modification GTPase TrmE [Enterococcus faecium E980] Length = 465 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 37/129 (28%), Positives = 76/129 (58%), Gaps = 5/129 (3%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L A++GRPNVGKS+L+N LL + + +G TRD + N + P+++ D Sbjct: 222 KVLREGLSTAIIGRPNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLID 281 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ + E + V++S +++ + +++L+ + P +D +++++ +G Sbjct: 282 TAGIRETEDVVERI---GVERSRKALAEADLILLVLNQSEPLTAEDEQLLEA--TSGLKR 336 Query: 318 VLALNKWDM 326 ++ LNK D+ Sbjct: 337 IILLNKTDL 345 Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 41/122 (33%), Positives = 71/122 (58%), Gaps = 9/122 (7%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 + AI+G PNVGKS+L N L++++ A+V + G TRD + + GV ++DTAGI + Sbjct: 229 STAIIGRPNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRET 288 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAI---TSFLRKKNIPIIIVSNK 120 ++ + + +++ A+ EA LIL +++ +T D + TS L++ II+ NK Sbjct: 289 EDV-VERIGVERSRKALAEADLILLVLNQSEPLTAEDEQLLEATSGLKR-----IILLNK 342 Query: 121 MD 122 D Sbjct: 343 TD 344 >gi|322421976|ref|YP_004201199.1| tRNA modification GTPase TrmE [Geobacter sp. M18] gi|320128363|gb|ADW15923.1| tRNA modification GTPase TrmE [Geobacter sp. M18] Length = 455 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 38/135 (28%), Positives = 75/135 (55%), Gaps = 5/135 (3%) Query: 192 EGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNH 251 EG + + + + + + G+PNVGKS+L+N LL R + S G TRD + N Sbjct: 209 EGFDEGRVLREGVSVVIAGKPNVGKSSLLNTLLKEKRAIVTSVPGTTRDLIEEVVNINGL 268 Query: 252 PIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVF 311 P+++ DTAG+R+ + +EQ+ V+ S+ + + + ++D + PF ++D I+ ++ Sbjct: 269 PVKLLDTAGIRESE---DQVEQEGVRLSLDRIPKADLVLFVVDGSSPFGEEDASILLAIG 325 Query: 312 NTGHAVVLALNKWDM 326 + + ++ NK D+ Sbjct: 326 S--KSCIVVRNKSDL 338 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 56/184 (30%), Positives = 85/184 (46%), Gaps = 23/184 (12%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 ++ I G PNVGKS+L N L+K+K A+V + PG TRD + ING+ ++DTAGI Sbjct: 222 SVVIAGKPNVGKSSLLNTLLKEKRAIVTSVPGTTRDLIEEVVNINGLPVKLLDTAGI--- 278 Query: 64 KNCSIAKQMNDQTELA--------INEAHLILFLIDSKAGITPYDHAITSFLRKKNIPII 115 ++ DQ E I +A L+LF++D + D +I + K+ I Sbjct: 279 ------RESEDQVEQEGVRLSLDRIPKADLVLFVVDGSSPFGEEDASILLAIGSKS--CI 330 Query: 116 IVSNKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 +V NK D +A + + +V IS G EL I F + E + Sbjct: 331 VVRNKSDLPVAAALPGDCSA----PVVAISTLTGAGVPELRDAITNAFMHGHAIDGREFV 386 Query: 176 ENNK 179 +K Sbjct: 387 AVSK 390 >gi|322391812|ref|ZP_08065277.1| GTP-binding protein Era [Streptococcus peroris ATCC 700780] gi|321145292|gb|EFX40688.1| GTP-binding protein Era [Streptococcus peroris ATCC 700780] Length = 299 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 49/179 (27%), Positives = 88/179 (49%), Gaps = 7/179 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKST N ++ +K+A++ + TR+++ G + +DT GI K Sbjct: 8 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM--- 121 ++ M + + E +LF++ + D I L+ +P+I+V NK+ Sbjct: 68 -TALGDFMVESAYSTLREVDTVLFMVPADEARGKGDDMIMERLKAAKVPVILVVNKIDKV 126 Query: 122 --DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 D +AQ + + +DFKEIV ISA S L ++ ++ + P + I ++ Sbjct: 127 HPDQLLAQIDDFR-NQMDFKEIVPISALQGNNVSHLVDILSDNLEEGFQYFPADQITDH 184 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKST +N ++G + ++ TR+ + + I DT G+ KP Sbjct: 8 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +L V+ + ++R +T + ++ A K D I++ + V+L +NK D Sbjct: 68 T---ALGDFMVESAYSTLREVDTVLFMVPADEARGKGDDMIMERLKAAKVPVILVVNKID 124 Query: 326 MV 327 V Sbjct: 125 KV 126 >gi|269798908|ref|YP_003312808.1| tRNA modification GTPase TrmE [Veillonella parvula DSM 2008] gi|269095537|gb|ACZ25528.1| tRNA modification GTPase TrmE [Veillonella parvula DSM 2008] Length = 461 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 46/152 (30%), Positives = 79/152 (51%), Gaps = 3/152 (1%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T IVG PN GKS+L N L+++ A+V + PG TRD + + G+ ++DTAGI D Sbjct: 225 TTVIVGRPNAGKSSLMNALLRENRAIVTDIPGTTRDSIEEYMTVEGISLRLIDTAGIRDT 284 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 ++ A + + IN+A ++L +ID +TP + I + + N +++ + + Sbjct: 285 QDTVEALGVERARDY-INKADIVLCVIDGSTSLTPEEIEILTSVSGLNTIVLLNKSDVAQ 343 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 + N E + F I ISA+ G++ L Sbjct: 344 VVTDENIKEHGT--FTAIERISAKEGEGSAVL 373 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 54/202 (26%), Positives = 93/202 (46%), Gaps = 20/202 (9%) Query: 167 YPNHPLEMIENNK-RNEESPKENITSEGKSSVKN---ISKPLRIAVVGRPNVGKSTLINR 222 YP +E + + + R + P E S+ I + +VGRPN GKS+L+N Sbjct: 183 YPEEDIEDVTSQEVREQLQPILKAMDELLSTANTGRLIRDGITTVIVGRPNAGKSSLMNA 242 Query: 223 LLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQS 282 LL NR + G TRDS+ + + + DTAG+R E+L V+++ Sbjct: 243 LLRENRAIVTDIPGTTRDSIEEYMTVEGISLRLIDTAGIRDTQDTVEAL---GVERARDY 299 Query: 283 VRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAI 342 + + + ++D + +++ I+ SV +G ++ LNK SD ++ D Sbjct: 300 INKADIVLCVIDGSTSLTPEEIEILTSV--SGLNTIVLLNK----SDVAQVVTD------ 347 Query: 343 KNLPQIGDI-YINTISGRTGEG 363 +N+ + G I IS + GEG Sbjct: 348 ENIKEHGTFTAIERISAKEGEG 369 >gi|227498623|ref|ZP_03928767.1| GTP-binding protein era [Acidaminococcus sp. D21] gi|226904079|gb|EEH89997.1| GTP-binding protein era [Acidaminococcus sp. D21] Length = 306 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 41/129 (31%), Positives = 70/129 (54%), Gaps = 3/129 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IAV+GRPN GKSTLI++L+G + + TR+ + + + + DT G+ KP Sbjct: 13 IAVIGRPNAGKSTLIDKLIGEKAAIVSDRPQTTRNRILCILSTEKAQLIFLDTPGLHKPK 72 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + L + VK + S++ + + ++DAT K + I++ + V+L LNK D Sbjct: 73 ---DKLGEHMVKAAEDSLKDVDAVLYVVDATEKRGKGEAYILERLKKVQVPVILVLNKVD 129 Query: 326 MVSDKLNLL 334 +++ K NLL Sbjct: 130 LINQKENLL 138 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 64/118 (54%), Gaps = 1/118 (0%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA++G PN GKSTL ++L+ +K A+V + P TR+R+ +DT G+ K Sbjct: 13 IAVIGRPNAGKSTLIDKLIGEKAAIVSDRPQTTRNRILCILSTEKAQLIFLDTPGLHKPK 72 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + + + M E ++ + +L+++D+ + I L+K +P+I+V NK+D Sbjct: 73 D-KLGEHMVKAAEDSLKDVDAVLYVVDATEKRGKGEAYILERLKKVQVPVILVLNKVD 129 >gi|138897067|ref|YP_001127520.1| tRNA modification GTPase TrmE [Geobacillus thermodenitrificans NG80-2] gi|196249888|ref|ZP_03148584.1| tRNA modification GTPase TrmE [Geobacillus sp. G11MC16] gi|166200479|sp|A4ITX1|MNME_GEOTN RecName: Full=tRNA modification GTPase mnmE gi|134268580|gb|ABO68775.1| Thiophen and furan oxidation [Geobacillus thermodenitrificans NG80-2] gi|196210764|gb|EDY05527.1| tRNA modification GTPase TrmE [Geobacillus sp. G11MC16] Length = 462 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 40/129 (31%), Positives = 70/129 (54%), Gaps = 5/129 (3%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L ++GRPNVGKS+L+N L NR + G TRD + N + P+ + D Sbjct: 219 KILREGLATVIIGRPNVGKSSLLNALAHENRAIVTDIPGTTRDVIEEYVNVRGVPLRLID 278 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ I E + V++S Q ++ + +++L+ P ++D R+ G V Sbjct: 279 TAGIRETEDIVERI---GVERSRQMLKKADLILLVLNYHEPLTEEDERLF--AMTEGMDV 333 Query: 318 VLALNKWDM 326 ++ +NK D+ Sbjct: 334 IVIVNKTDL 342 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 36/116 (31%), Positives = 65/116 (56%), Gaps = 3/116 (2%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 I+G PNVGKS+L N L + A+V + PG TRD + + GV ++DTAGI + ++ Sbjct: 229 IIGRPNVGKSSLLNALAHENRAIVTDIPGTTRDVIEEYVNVRGVPLRLIDTAGIRETEDI 288 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + + +++ + +A LIL +++ +T D + F + + +I++ NK D Sbjct: 289 -VERIGVERSRQMLKKADLILLVLNYHEPLTEEDERL--FAMTEGMDVIVIVNKTD 341 >gi|319744919|gb|EFV97251.1| tRNA modification GTPase TrmE [Streptococcus agalactiae ATCC 13813] Length = 469 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 42/117 (35%), Positives = 70/117 (59%), Gaps = 3/117 (2%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L++++ A+V + G TRD + I GV +VDTAGI D + Sbjct: 239 AIIGRPNVGKSSLLNNLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLVDTAGIRDTDD 298 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + K ++++ A+ EA L+L +++S +T D ++ ++ N I++ NK D Sbjct: 299 I-VEKIGVERSKKALEEADLVLLVLNSSEPLTLQDRSLLELSKESN--RIVLLNKTD 352 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 40/129 (31%), Positives = 72/129 (55%), Gaps = 5/129 (3%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L A++GRPNVGKS+L+N LL + + G TRD + N K P+++ D Sbjct: 230 KILREGLSTAIIGRPNVGKSSLLNNLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLVD 289 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R I E + V++S +++ + +++L+++ P QD +++ + V Sbjct: 290 TAGIRDTDDIVEKI---GVERSKKALEEADLVLLVLNSSEPLTLQDRSLLELSKESNRIV 346 Query: 318 VLALNKWDM 326 + LNK D+ Sbjct: 347 L--LNKTDL 353 >gi|306833320|ref|ZP_07466448.1| tRNA modification GTPase TrmE [Streptococcus bovis ATCC 700338] gi|304424517|gb|EFM27655.1| tRNA modification GTPase TrmE [Streptococcus bovis ATCC 700338] Length = 457 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 43/117 (36%), Positives = 69/117 (58%), Gaps = 3/117 (2%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L++++ A+V + G TRD + I GV +VDTAGI + + Sbjct: 227 AIIGRPNVGKSSLLNNLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLVDTAGIRETDD 286 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + K ++++ A+ EA L+L +++S +T D A+ + N II+ NK D Sbjct: 287 V-VEKIGVERSKKALEEADLVLLVLNSSEPLTDQDRALLELSKDSN--RIILLNKTD 340 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 41/140 (29%), Positives = 78/140 (55%), Gaps = 6/140 (4%) Query: 187 ENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISW 246 EN+ K K + + L A++GRPNVGKS+L+N LL + + G TRD + Sbjct: 208 ENLLRTAKRG-KILREGLSTAIIGRPNVGKSSLLNNLLREEKAIVTDIEGTTRDVIEEYV 266 Query: 247 NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRI 306 N K P+++ DTAG+R+ + E + V++S +++ + +++L+++ P QD + Sbjct: 267 NIKGVPLKLVDTAGIRETDDVVEKI---GVERSKKALEEADLVLLVLNSSEPLTDQDRAL 323 Query: 307 VDSVFNTGHAVVLALNKWDM 326 ++ ++ ++ LNK D+ Sbjct: 324 LELSKDSNR--IILLNKTDL 341 >gi|149183349|ref|ZP_01861787.1| Era [Bacillus sp. SG-1] gi|148848946|gb|EDL63158.1| Era [Bacillus sp. SG-1] Length = 297 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 57/192 (29%), Positives = 92/192 (47%), Gaps = 11/192 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 I+I+G PNVGKST NR++ +K+A++ + P TR+++ G N +DT GI K Sbjct: 7 ISIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKVQGVYTTNESQMIFIDTPGIHKPK 66 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + M + + E +ILF+I+++ G D I L+ P+ +V NK+D Sbjct: 67 H-KLGDFMMKIAQNTLREVDIILFMINAEEGYGRGDEFIIEKLKGVKTPVFLVLNKIDQL 125 Query: 125 IAQR--NFYEIYSL--DFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + E Y+ DF +V ISA L S I K + +P + I ++ Sbjct: 126 HPDKILPLIEQYNALHDFAAVVPISALEGNNVETLISEIRKELPEGPQYYPADQITDH-- 183 Query: 181 NEESPKENITSE 192 P+ I SE Sbjct: 184 ----PERFIVSE 191 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/122 (27%), Positives = 60/122 (49%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 I+++GRPNVGKST +NR++G + + TR+ V + + DT G+ KP Sbjct: 7 ISIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKVQGVYTTNESQMIFIDTPGIHKPK 66 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L +K + ++R + + +++A + + D I++ + V L LNK D Sbjct: 67 H---KLGDFMMKIAQNTLREVDIILFMINAEEGYGRGDEFIIEKLKGVKTPVFLVLNKID 123 Query: 326 MV 327 + Sbjct: 124 QL 125 >gi|332971197|gb|EGK10160.1| tRNA modification GTPase TrmE [Desmospora sp. 8437] Length = 458 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 41/116 (35%), Positives = 67/116 (57%), Gaps = 3/116 (2%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PNVGKS+L N L ++ A+V + PG TRD + + G+ +VDTAGI + ++ Sbjct: 225 IVGRPNVGKSSLLNALARENKAIVTDIPGTTRDVIEEYVNVRGIPLRLVDTAGIRETEDV 284 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + + +++ A+ A LIL L++ ++ D + +R N +I+V NKMD Sbjct: 285 -VERIGVERSHQALEGADLILLLLNHGESLSEDDRKLLKMVR--NQTVIVVVNKMD 337 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 48/167 (28%), Positives = 91/167 (54%), Gaps = 14/167 (8%) Query: 208 VVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRI 267 +VGRPNVGKS+L+N L N+ + G TRD + N + P+ + DTAG+R+ + Sbjct: 225 IVGRPNVGKSSLLNALARENKAIVTDIPGTTRDVIEEYVNVRGIPLRLVDTAGIRETEDV 284 Query: 268 TESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMV 327 E + V++S Q++ + ++LL+ + D +++ V N V++ +NK D+ Sbjct: 285 VERI---GVERSHQALEGADLILLLLNHGESLSEDDRKLLKMVRN--QTVIVVVNKMDL- 338 Query: 328 SDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEI 374 +L+L + ++NL IG+ + T S +G+D L +++++ Sbjct: 339 PRRLDL------QEVRNL--IGEAPLITTSMIREQGIDPLEEAIVDL 377 >gi|163788828|ref|ZP_02183273.1| tRNA modification GTPase [Flavobacteriales bacterium ALC-1] gi|159876065|gb|EDP70124.1| tRNA modification GTPase [Flavobacteriales bacterium ALC-1] Length = 461 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 51/182 (28%), Positives = 88/182 (48%), Gaps = 36/182 (19%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VG PNVGKSTL+N LL +R + +G TRD++ + DTAG+R+ Sbjct: 223 VAIVGEPNVGKSTLLNALLNEDRAIVSEIAGTTRDTIEDEISIGGIGFRFIDTAGIRETK 282 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA--------TIPFEKQDLRIVDSVFNTGHAV 317 + ES+ +KK+ + + + TI L DA + E + +R Sbjct: 283 DVVESI---GIKKTFEKIEQSQVTIYLFDAQKNSDNLEAVRIEVEKIR------------ 327 Query: 318 VLALNKWD-----MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVL 372 NK+ ++++K++ L DL+ I I D+ + +S +TG G++ L S+L Sbjct: 328 ----NKYPQKPLLVIANKIDALDDLQLAEINR--TIADVLL--LSAKTGFGVEQLTSSLL 379 Query: 373 EI 374 + Sbjct: 380 NL 381 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 66/123 (53%), Gaps = 5/123 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N L+ + A+V G TRD + + I G+ F +DTAGI + K Sbjct: 223 VAIVGEPNVGKSTLLNALLNEDRAIVSEIAGTTRDTIEDEISIGGIGFRFIDTAGIRETK 282 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKN----IPIIIVSNK 120 + + + E I ++ + ++L D++ + + +N P+++++NK Sbjct: 283 DVVESIGIKKTFE-KIEQSQVTIYLFDAQKNSDNLEAVRIEVEKIRNKYPQKPLLVIANK 341 Query: 121 MDT 123 +D Sbjct: 342 IDA 344 >gi|152981181|ref|YP_001355383.1| tRNA modification GTPase TrmE [Janthinobacterium sp. Marseille] gi|205829159|sp|A6T4D6|MNME_JANMA RecName: Full=tRNA modification GTPase mnmE gi|151281258|gb|ABR89668.1| tRNA modification GTPase [Janthinobacterium sp. Marseille] Length = 465 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 54/184 (29%), Positives = 92/184 (50%), Gaps = 14/184 (7%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 L I + G+PNVGKS+L+N L G + + + +G TRD V + + P+ + DTAG+R Sbjct: 224 LNIVLAGQPNVGKSSLLNALAGSDVAIVTAIAGTTRDKVIETIQIEGIPVNVIDTAGIRD 283 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 S T+ +E+ ++++ +V+T + I +LDA + D +IV+ F V+ NK Sbjct: 284 ASDATDEVERIGIERTWAAVKTADVIIHMLDANRGPTRADEQIVER-FPENIPVMRIWNK 342 Query: 324 WDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRIT 383 D+ + AI +P IY +S +G+D L +L + W+ Sbjct: 343 IDLSGHR---------PAIDRMPDSTHIY---VSATDLQGMDLLRGELLRLIG-WQQTGE 389 Query: 384 TSYL 387 + YL Sbjct: 390 SLYL 393 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 41/120 (34%), Positives = 67/120 (55%), Gaps = 3/120 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 I + G PNVGKS+L N L +A+V G TRD++ I G+ N++DTAGI D Sbjct: 226 IVLAGQPNVGKSSLLNALAGSDVAIVTAIAGTTRDKVIETIQIEGIPVNVIDTAGIRDAS 285 Query: 65 NCS--IAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + + + + ++T A+ A +I+ ++D+ G T D I +NIP++ + NK+D Sbjct: 286 DATDEVERIGIERTWAAVKTADVIIHMLDANRGPTRADEQIVERF-PENIPVMRIWNKID 344 >gi|310825624|ref|YP_003957982.1| tRNA modification GTPase mnme [Stigmatella aurantiaca DW4/3-1] gi|309398696|gb|ADO76155.1| tRNA modification GTPase MnmE [Stigmatella aurantiaca DW4/3-1] Length = 427 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 58/196 (29%), Positives = 92/196 (46%), Gaps = 26/196 (13%) Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 S E + SE + + + R+A+ G N GKSTL NRL+G R L ++ G TRD + Sbjct: 181 SEAEALLSEAGRG-RLVRRGARVALYGPVNAGKSTLFNRLVGEARALVDAEPGTTRDVLE 239 Query: 244 ISWNWKNHPIEIFDTAGMRK-PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 W + + DTAG+R+ P R+ E+L ++++ SV +VL +P E + Sbjct: 240 ARVEWNGLALSLLDTAGLRETPGRL-EALGIARTRQTLASVDLA--LLVLPPEALPAEAE 296 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGE 362 G VL V+ K ++ L + A + + +SGRTGE Sbjct: 297 GW-----AHEAGATAVL------RVAGKCDVAPSLPSPAWERGLR--------VSGRTGE 337 Query: 363 GLDDLMVSVLEINKLW 378 GL+ L ++L + LW Sbjct: 338 GLEPLRAAIL--SHLW 351 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 33/85 (38%), Positives = 51/85 (60%), Gaps = 2/85 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD-- 62 +A+ G N GKSTLFNRLV + A+V PG TRD L + NG+ +++DTAG+ + Sbjct: 202 VALYGPVNAGKSTLFNRLVGEARALVDAEPGTTRDVLEARVEWNGLALSLLDTAGLRETP 261 Query: 63 GKNCSIAKQMNDQTELAINEAHLIL 87 G+ ++ QT +++ A L+L Sbjct: 262 GRLEALGIARTRQTLASVDLALLVL 286 >gi|254447523|ref|ZP_05060989.1| tRNA modification GTPase TrmE [gamma proteobacterium HTCC5015] gi|198262866|gb|EDY87145.1| tRNA modification GTPase TrmE [gamma proteobacterium HTCC5015] Length = 432 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 41/124 (33%), Positives = 68/124 (54%), Gaps = 2/124 (1%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 ++ ++G PN GKS+L N L A+V + G TRD L ++G+ NI+DTAG+ D Sbjct: 200 SVVLLGQPNAGKSSLLNALAGDDTAIVTDVAGTTRDVLQQAIHLDGLPLNIIDTAGLRDT 259 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 ++ A+ + + A+ +A +L LID++ G D AI L + + + NK+D Sbjct: 260 QDVVEAEGVR-RAWAAVEQADRVLLLIDAERGFDHGDQAIVDALDRHSTNFDYLWNKID- 317 Query: 124 RIAQ 127 R+ Q Sbjct: 318 RLGQ 321 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 67/120 (55%), Gaps = 6/120 (5%) Query: 194 KSSVKN---ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKN 250 K SV+ + + + + ++G+PN GKS+L+N L G + + +G TRD + + + Sbjct: 186 KQSVRQGKLLREGMSVVLLGQPNAGKSSLLNALAGDDTAIVTDVAGTTRDVLQQAIHLDG 245 Query: 251 HPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSV 310 P+ I DTAG+R + E+ + V+++ +V + ++L+DA F+ D IVD++ Sbjct: 246 LPLNIIDTAGLRDTQDVVEA---EGVRRAWAAVEQADRVLLLIDAERGFDHGDQAIVDAL 302 >gi|183508428|ref|ZP_02957974.1| GTP-binding protein Era [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|182675835|gb|EDT87740.1| GTP-binding protein Era [Ureaplasma parvum serovar 14 str. ATCC 33697] Length = 300 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 52/163 (31%), Positives = 90/163 (55%), Gaps = 11/163 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYG--QAIINGVIFNIVDTAGIAD 62 +AIVG PNVGKSTL N ++KKK++++ N P TR+ + + + +IF DT G + Sbjct: 8 VAIVGKPNVGKSTLINAIMKKKVSIISNKPQTTRNAVKEIYEDDESAIIF--TDTPGFHE 65 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLR---KKNIPIIIVSN 119 N + +N + E++ EA++ILF+ + D I + ++ K+N+ ++I Sbjct: 66 PSN-KLDLFLNHEIEISYKEANIILFVTTMDKELDANDFEIINLIKEANKENVILVISKA 124 Query: 120 KM---DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVI 159 +M +I +R + L FK++V+ISA H + +L S I Sbjct: 125 EMAKNQDQIDERIHFLKKHLVFKDVVQISALHAINIDKLISTI 167 Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust. Identities = 33/128 (25%), Positives = 61/128 (47%), Gaps = 8/128 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VG+PNVGKSTLIN ++ + ++ TR++V + I DT G +PS Sbjct: 8 VAIVGKPNVGKSTLINAIMKKKVSIISNKPQTTRNAVKEIYEDDESAIIFTDTPGFHEPS 67 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATI--PFEKQDLRIVDSVFNTGHA-VVLALN 322 + ++ S + E I+L T+ + D I++ + V+L ++ Sbjct: 68 NKLDLFLNHEIEISYK-----EANIILFVTTMDKELDANDFEIINLIKEANKENVILVIS 122 Query: 323 KWDMVSDK 330 K +M ++ Sbjct: 123 KAEMAKNQ 130 >gi|120436262|ref|YP_861948.1| tRNA modification GTPase TrmE [Gramella forsetii KT0803] gi|205829153|sp|A0M2N6|MNME_GRAFK RecName: Full=tRNA modification GTPase mnmE gi|117578412|emb|CAL66881.1| tRNA modification GTPase [Gramella forsetii KT0803] Length = 474 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 53/166 (31%), Positives = 87/166 (52%), Gaps = 17/166 (10%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N L+ ++ A+V G TRD + + I GV F +DTAGI + K Sbjct: 224 VAIVGEPNVGKSTLLNALLNEERAIVSEIAGTTRDTIEDEMSIGGVGFRFIDTAGIRETK 283 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNI-------PIIIV 117 + + + E I++A ++++L+DS + + + I P++I+ Sbjct: 284 DVVESIGIKKTFE-KISQAQVVVYLVDSSQIAVNRERLQQVRIEIEKIKNKFPQKPLLII 342 Query: 118 SNKMDTRIAQRNFY-------EIYS-LDFKEIVEISAEHDLGTSEL 155 +NK D R+A + EI S + + + +SA+ +LG EL Sbjct: 343 ANKTD-RLADEEIHNLKTKLEEISSHAERAQFLLLSAKTNLGVEEL 387 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 48/175 (27%), Positives = 91/175 (52%), Gaps = 12/175 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VG PNVGKSTL+N LL R + +G TRD++ + DTAG+R+ Sbjct: 224 VAIVGEPNVGKSTLLNALLNEERAIVSEIAGTTRDTIEDEMSIGGVGFRFIDTAGIRETK 283 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDAT---IPFEK-QDLRI-VDSVFNT--GHAVV 318 + ES+ +KK+ + + + + L+D++ + E+ Q +RI ++ + N ++ Sbjct: 284 DVVESI---GIKKTFEKISQAQVVVYLVDSSQIAVNRERLQQVRIEIEKIKNKFPQKPLL 340 Query: 319 LALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 + NK D ++D+ + +L+TK + +S +T G+++L +LE Sbjct: 341 IIANKTDRLADE--EIHNLKTKLEEISSHAERAQFLLLSAKTNLGVEELKEKLLE 393 >gi|15604593|ref|NP_221111.1| tRNA modification GTPase TrmE [Rickettsia prowazekii str. Madrid E] gi|6647889|sp|Q9ZCI1|MNME_RICPR RecName: Full=tRNA modification GTPase mnmE gi|3861288|emb|CAA15187.1| POSSIBLE THIOPHENE AND FURAN OXIDATION PROTEIN THDF (thdF) [Rickettsia prowazekii] gi|292572404|gb|ADE30319.1| tRNA modification GTPase TrmE [Rickettsia prowazekii Rp22] Length = 445 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 43/132 (32%), Positives = 76/132 (57%), Gaps = 11/132 (8%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 ++ L++A++G PN GKS+L+N L+ N + + +G TRD + + +PI + DTA Sbjct: 212 LNNGLKLAIIGPPNTGKSSLLNFLMQRNIAIVSNIAGTTRDIIEGHLDIGGYPIILQDTA 271 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTG---HA 316 G+R S T+ +EQ+ +K+++ S +T IV+ DA EK D I + + TG Sbjct: 272 GIRTES--TDIIEQEGIKRAINSAKTANIKIVMFDA----EKLDSSINNDI--TGLIDEN 323 Query: 317 VVLALNKWDMVS 328 ++ +NK D++ Sbjct: 324 TIVIINKIDLIE 335 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 41/121 (33%), Positives = 68/121 (56%), Gaps = 9/121 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PN GKS+L N L+++ +A+V N G TRD + G I G + DTAGI + Sbjct: 218 LAIIGPPNTGKSSLLNFLMQRNIAIVSNIAGTTRDIIEGHLDIGGYPIILQDTAGIRT-E 276 Query: 65 NCSIAKQMNDQTELAINE---AHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 + I +Q + + AIN A++ + + D++ + ++ IT + + I II NK+ Sbjct: 277 STDIIEQ--EGIKRAINSAKTANIKIVMFDAEKLDSSINNDITGLIDENTIVII---NKI 331 Query: 122 D 122 D Sbjct: 332 D 332 >gi|25010947|ref|NP_735342.1| tRNA modification GTPase TrmE [Streptococcus agalactiae NEM316] gi|77413158|ref|ZP_00789357.1| tRNA modification GTPase TrmE [Streptococcus agalactiae 515] gi|32171831|sp|Q8E5T7|MNME_STRA3 RecName: Full=tRNA modification GTPase mnmE gi|23095326|emb|CAD46537.1| unknown [Streptococcus agalactiae NEM316] gi|77160776|gb|EAO71888.1| tRNA modification GTPase TrmE [Streptococcus agalactiae 515] Length = 458 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 42/117 (35%), Positives = 70/117 (59%), Gaps = 3/117 (2%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L++++ A+V + G TRD + I GV +VDTAGI D + Sbjct: 228 AIIGRPNVGKSSLLNNLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLVDTAGIRDTDD 287 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + K ++++ A+ EA L+L +++S +T D ++ ++ N I++ NK D Sbjct: 288 I-VEKIGVERSKKALEEADLVLLVLNSSEPLTLQDRSLLELSKESN--RIVLLNKTD 341 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 40/129 (31%), Positives = 72/129 (55%), Gaps = 5/129 (3%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L A++GRPNVGKS+L+N LL + + G TRD + N K P+++ D Sbjct: 219 KILREGLSTAIIGRPNVGKSSLLNNLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLVD 278 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R I E + V++S +++ + +++L+++ P QD +++ + V Sbjct: 279 TAGIRDTDDIVEKI---GVERSKKALEEADLVLLVLNSSEPLTLQDRSLLELSKESNRIV 335 Query: 318 VLALNKWDM 326 + LNK D+ Sbjct: 336 L--LNKTDL 342 >gi|260771274|ref|ZP_05880201.1| GTP-binding protein Era [Vibrio furnissii CIP 102972] gi|260613871|gb|EEX39063.1| GTP-binding protein Era [Vibrio furnissii CIP 102972] gi|315179119|gb|ADT86033.1| GTP-binding protein Era [Vibrio furnissii NCTC 11218] Length = 321 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 44/149 (29%), Positives = 79/149 (53%), Gaps = 8/149 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N ++ +K+++ P TR R+ G VDT G+ + Sbjct: 30 VAIVGRPNVGKSTLLNNILGQKISITSRKPQTTRHRIMGVDTDGDYQAIYVDTPGLHIEE 89 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN ++++ +L+ F+++ T D + + L+ N P+++ NK+D Sbjct: 90 KRAINRLMNRAASSSLSDVNLVFFVVEG-THWTADDEMVLNKLKNANFPVVLCVNKVDN- 147 Query: 125 IAQRNFYEIY------SLDFKEIVEISAE 147 + RN ++ +DF ++V ISA+ Sbjct: 148 VKDRNDVMLHMMELSNKMDFVDVVPISAK 176 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 35/130 (26%), Positives = 60/130 (46%), Gaps = 5/130 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMR-KP 264 +A+VGRPNVGKSTL+N +LG +T + TR + ++ DT G+ + Sbjct: 30 VAIVGRPNVGKSTLLNNILGQKISITSRKPQTTRHRIMGVDTDGDYQAIYVDTPGLHIEE 89 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 R L + S+ V + + + D +++ + N VVL +NK Sbjct: 90 KRAINRLMNRAASSSLSDV----NLVFFVVEGTHWTADDEMVLNKLKNANFPVVLCVNKV 145 Query: 325 DMVSDKLNLL 334 D V D+ +++ Sbjct: 146 DNVKDRNDVM 155 >gi|156741277|ref|YP_001431406.1| GTP-binding protein Era [Roseiflexus castenholzii DSM 13941] gi|156232605|gb|ABU57388.1| GTP-binding protein Era [Roseiflexus castenholzii DSM 13941] Length = 449 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 51/172 (29%), Positives = 81/172 (47%), Gaps = 8/172 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTL N L+ +K+A+V P TR + G VDT GI + + Sbjct: 164 VALVGRPNVGKSTLLNALLGQKVAIVSPKPQTTRTAIRGILTRPDAQIVFVDTPGIHEPR 223 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N + M Q AI +A ++ ++D D I + +RK + I+V NK+D R Sbjct: 224 N-RLGAYMVKQARRAIPDADVVCMVVDITRPPGSLDERIAALVRKASARRILVLNKIDLR 282 Query: 125 IAQ-----RNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHP 171 + + + + D + V +SA G L I ++ + P +P Sbjct: 283 TKRGSDNLQAYRALAPWDME--VAVSALRGHGLDALVDEIVRLLPEGPPLYP 332 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 48/168 (28%), Positives = 80/168 (47%), Gaps = 8/168 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VGRPNVGKSTL+N LLG + + TR ++ + I DT G+ +P Sbjct: 164 VALVGRPNVGKSTLLNALLGQKVAIVSPKPQTTRTAIRGILTRPDAQIVFVDTPGIHEPR 223 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L VK++ +++ + +++D T P D RI V +L LNK D Sbjct: 224 ---NRLGAYMVKQARRAIPDADVVCMVVDITRPPGSLDERIAALVRKASARRILVLNKID 280 Query: 326 MVSDK-LNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVL 372 + + + + LQ R A P ++ ++ + G + L D +V +L Sbjct: 281 LRTKRGSDNLQAYRALA----PWDMEVAVSALRGHGLDALVDEIVRLL 324 >gi|160915033|ref|ZP_02077246.1| hypothetical protein EUBDOL_01041 [Eubacterium dolichum DSM 3991] gi|158432832|gb|EDP11121.1| hypothetical protein EUBDOL_01041 [Eubacterium dolichum DSM 3991] Length = 298 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 44/147 (29%), Positives = 77/147 (52%), Gaps = 7/147 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PN GKSTL N ++K+K+A+ P TR+ + G + VDT GI K Sbjct: 8 IAIVGRPNAGKSTLLNAILKEKVAITTPKPQTTRNNISGILTTEDTQYVFVDTPGIHKPK 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + + +N AI+EA + +++D+ D + ++ +IP+ ++ NK+D Sbjct: 68 H-ELGRTLNKNAYTAISEADVNFWVVDATQPYGSGDEFMLEKMKSAHIPVFLILNKIDL- 125 Query: 125 IAQRNFYEIYS-----LDFKEIVEISA 146 + + ++ + ++F EI ISA Sbjct: 126 LEKEKLLKVLARWQERMEFAEIFPISA 152 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 68/132 (51%), Gaps = 4/132 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA+VGRPN GKSTL+N +L +T + TR+++S ++ DT G+ KP Sbjct: 8 IAIVGRPNAGKSTLLNAILKEKVAITTPKPQTTRNNISGILTTEDTQYVFVDTPGIHKPK 67 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + K + ++ + ++DAT P+ D +++ + + V L LNK D Sbjct: 68 H---ELGRTLNKNAYTAISEADVNFWVVDATQPYGSGDEFMLEKMKSAHIPVFLILNKID 124 Query: 326 MVSDKLNLLQDL 337 ++ +K LL+ L Sbjct: 125 LL-EKEKLLKVL 135 >gi|32490761|ref|NP_871015.1| tRNA modification GTPase TrmE [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|31340464|sp|Q8D3I9|MNME_WIGBR RecName: Full=tRNA modification GTPase mnmE gi|25165967|dbj|BAC24158.1| thdF [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 453 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 50/177 (28%), Positives = 94/177 (53%), Gaps = 20/177 (11%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP 264 +I ++G+PN GKS++ N L G N + S G TRD + N P+ I+DTAG+RK Sbjct: 218 KIVIIGKPNSGKSSIFNILSGNNNAIVTSIEGTTRDILHEHIYLDNIPLHIYDTAGLRKT 277 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 + +E+ + ++++ ++T + ++++D+ I + D+ ++ FN+ NK Sbjct: 278 D---DKIEKIGILRALKEIKTSDHILLIVDSNID-KSNDINLIWPKFNSNIK-----NKI 328 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTI---SGRTGEGLDDLMVSVLEINKLW 378 ++ +K++L K +P+I N I S TGEG+D L+ + ++N L Sbjct: 329 TIIRNKIDLS--------KEIPEIKIFKKNNIISLSAYTGEGVDILIKYLKDLNCLL 377 Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 34/56 (60%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 I I+G PN GKS++FN L A+V + G TRD L+ ++ + +I DTAG+ Sbjct: 219 IVIIGKPNSGKSSIFNILSGNNNAIVTSIEGTTRDILHEHIYLDNIPLHIYDTAGL 274 >gi|257457804|ref|ZP_05622965.1| tRNA modification GTPase TrmE [Treponema vincentii ATCC 35580] gi|257444854|gb|EEV19936.1| tRNA modification GTPase TrmE [Treponema vincentii ATCC 35580] Length = 459 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 42/118 (35%), Positives = 65/118 (55%), Gaps = 4/118 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + + G N GKS+LFN L+K+ A+V + G TRD L + G+ +I DTAG+ + Sbjct: 223 LVLAGKTNAGKSSLFNALLKEDRAIVSDIHGTTRDWLEAELDFKGIPAHIFDTAGLRATE 282 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + A + ELA + A ++L+LID G P +F+R+ +P+IIV K D Sbjct: 283 DAIEAIGVRRSVELA-SAADIVLYLID---GTKPPAEEDIAFIRENTVPLIIVQTKAD 336 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 45/172 (26%), Positives = 90/172 (52%), Gaps = 17/172 (9%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 +R+ + G+ N GKS+L N LL +R + G TRD + ++K P IFDTAG+R Sbjct: 221 VRLVLAGKTNAGKSSLFNALLKEDRAIVSDIHGTTRDWLEAELDFKGIPAHIFDTAGLRA 280 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 +++E V++S++ + + L+D T P ++D+ + NT +++ Sbjct: 281 TE---DAIEAIGVRRSVELASAADIVLYLIDGTKPPAEEDIAFIRE--NTVPLIIVQTK- 334 Query: 324 WDMVSDKLNLLQ-DLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEI 374 +DK ++ ++ A++ P + ++S +TG G+D L+ +V+++ Sbjct: 335 ----ADKTGKVEPEVLPAALQRYPAV------SLSSKTGAGIDRLIDTVVDL 376 >gi|289423889|ref|ZP_06425682.1| GTP-binding protein Era [Peptostreptococcus anaerobius 653-L] gi|289155666|gb|EFD04338.1| GTP-binding protein Era [Peptostreptococcus anaerobius 653-L] Length = 299 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 57/174 (32%), Positives = 88/174 (50%), Gaps = 14/174 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIV--DTAGIAD 62 ++IVG PNVGKSTL N +V +K+A++ + P TR+ + QA+ IV DT GI Sbjct: 8 VSIVGRPNVGKSTLMNDMVGEKIAIMSDKPQTTRNTI--QAVYTDEEAQIVFMDTPGIHK 65 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 KN + + M A I+F++D I D I L+K + P+ +V NK+D Sbjct: 66 PKN-KLGEMMVKSASDAFKNVDSIIFVVDDSRTIGKGDSLIIENLKKTSTPVFLVINKID 124 Query: 123 TRIAQRNFYEIYSLD-----FKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHP 171 + + +E+ + FKEI+ SA L S + S+I K+ K+ P Sbjct: 125 KIDNKEDLFEMIRMYDDLNVFKEIIPTSA---LKGSNIDSLI-KVIKRNLNEGP 174 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 38/133 (28%), Positives = 71/133 (53%), Gaps = 3/133 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +++VGRPNVGKSTL+N ++G + + TR+++ + + I DT G+ KP Sbjct: 8 VSIVGRPNVGKSTLMNDMVGEKIAIMSDKPQTTRNTIQAVYTDEEAQIVFMDTPGIHKPK 67 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + VK + + + ++ I ++D + K D I++++ T V L +NK D Sbjct: 68 N---KLGEMMVKSASDAFKNVDSIIFVVDDSRTIGKGDSLIIENLKKTSTPVFLVINKID 124 Query: 326 MVSDKLNLLQDLR 338 + +K +L + +R Sbjct: 125 KIDNKEDLFEMIR 137 >gi|238028966|ref|YP_002913197.1| tRNA modification GTPase TrmE [Burkholderia glumae BGR1] gi|237878160|gb|ACR30493.1| TRNA modification GTPase TrmE [Burkholderia glumae BGR1] Length = 472 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 52/188 (27%), Positives = 89/188 (47%), Gaps = 6/188 (3%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + L + + G+PNVGKS+L+N L G + +G TRD V+ + + P+ I DTA Sbjct: 223 LREGLSVVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQIEGIPLHIVDTA 282 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R+ + +E+ + ++ + + + LLDA D R + F G VV Sbjct: 283 GLRETE---DEVEKIGIARTWGEIERADVVLHLLDAREGLGADD-RAIAGRFPAGVPVVR 338 Query: 320 ALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWK 379 NK D+ +D + L A + D+ +S + G+G+D L +L I W+ Sbjct: 339 VFNKTDL-TDAPPAVAHLGGHAQADAAGGLDLSEVRLSAKRGDGIDLLRAELLRIAG-WQ 396 Query: 380 TRITTSYL 387 + YL Sbjct: 397 AGAESVYL 404 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 40/119 (33%), Positives = 66/119 (55%), Gaps = 2/119 (1%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 ++ + G PNVGKS+L N L ++A+V G TRD++ I G+ +IVDTAG+ + Sbjct: 228 SVVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQIEGIPLHIVDTAGLRET 287 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 ++ + K +T I A ++L L+D++ G+ D AI +P++ V NK D Sbjct: 288 ED-EVEKIGIARTWGEIERADVVLHLLDAREGLGADDRAIAGRF-PAGVPVVRVFNKTD 344 >gi|189347846|ref|YP_001944375.1| tRNA modification GTPase TrmE [Chlorobium limicola DSM 245] gi|189341993|gb|ACD91396.1| tRNA modification GTPase TrmE [Chlorobium limicola DSM 245] Length = 473 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 59/213 (27%), Positives = 102/213 (47%), Gaps = 22/213 (10%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 +S+ + +VG+PN GKSTL+N LLG R + G TRD + + + + DTA Sbjct: 227 LSEGVATVIVGKPNAGKSTLLNTLLGEERAIVSHMPGTTRDYIEECFVHEKTMFRLTDTA 286 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPF---EKQDLRIVDSVFNTGHA 316 G+R+ + E + V +S + + + + +LD + P E + +R + Sbjct: 287 GLREAAEEIER---EGVGRSYKKIGEADLILYMLDLSQPESLKESEVIREFRETYTHAKL 343 Query: 317 VVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDD---LMVSVLE 373 +V+A NK D+ SD LQ LR + + + IS + GEG+D LM S++E Sbjct: 344 IVIA-NKTDLASDSEERLQQLREETGCD--------VAGISAKQGEGIDGLLRLMSSMVE 394 Query: 374 -INKLWKTRITTSYLNSWLQKTQLQNPPPTIFN 405 ++KL + + L ++ L+N + N Sbjct: 395 GLDKLHDASVLVTSLRHYV---SLRNAGDAVRN 424 Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 63/118 (53%), Gaps = 3/118 (2%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PN GKSTL N L+ ++ A+V + PG TRD + + +F + DTAG+ + Sbjct: 235 IVGKPNAGKSTLLNTLLGEERAIVSHMPGTTRDYIEECFVHEKTMFRLTDTAGLREAAEE 294 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRK--KNIPIIIVSNKMD 122 + + ++ I EA LIL+++D + + + R+ + +I+++NK D Sbjct: 295 IEREGVG-RSYKKIGEADLILYMLDLSQPESLKESEVIREFRETYTHAKLIVIANKTD 351 >gi|22537039|ref|NP_687890.1| tRNA modification GTPase TrmE [Streptococcus agalactiae 2603V/R] gi|76788077|ref|YP_329621.1| tRNA modification GTPase TrmE [Streptococcus agalactiae A909] gi|77410695|ref|ZP_00787054.1| tRNA modification GTPase TrmE [Streptococcus agalactiae CJB111] gi|32171818|sp|Q8CX13|MNME_STRA5 RecName: Full=tRNA modification GTPase mnmE gi|123601915|sp|Q3K1I2|MNME_STRA1 RecName: Full=tRNA modification GTPase mnmE gi|22533896|gb|AAM99762.1|AE014231_20 tRNA modification GTPase TrmE [Streptococcus agalactiae 2603V/R] gi|76563134|gb|ABA45718.1| tRNA modification GTPase TrmE [Streptococcus agalactiae A909] gi|77163231|gb|EAO74183.1| tRNA modification GTPase TrmE [Streptococcus agalactiae CJB111] Length = 458 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 42/117 (35%), Positives = 70/117 (59%), Gaps = 3/117 (2%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L++++ A+V + G TRD + I GV +VDTAGI D + Sbjct: 228 AIIGRPNVGKSSLLNNLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLVDTAGIRDTDD 287 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + K ++++ A+ EA L+L +++S +T D ++ ++ N I++ NK D Sbjct: 288 I-VEKIGVERSKKALEEADLVLLVLNSSEPLTLQDRSLLELSKESN--RIVLLNKTD 341 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 40/129 (31%), Positives = 72/129 (55%), Gaps = 5/129 (3%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L A++GRPNVGKS+L+N LL + + G TRD + N K P+++ D Sbjct: 219 KILREGLSTAIIGRPNVGKSSLLNNLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLVD 278 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R I E + V++S +++ + +++L+++ P QD +++ + V Sbjct: 279 TAGIRDTDDIVEKI---GVERSKKALEEADLVLLVLNSSEPLTLQDRSLLELSKESNRIV 335 Query: 318 VLALNKWDM 326 + LNK D+ Sbjct: 336 L--LNKTDL 342 >gi|302380979|ref|ZP_07269440.1| tRNA modification GTPase TrmE [Finegoldia magna ACS-171-V-Col3] gi|303234699|ref|ZP_07321327.1| tRNA modification GTPase TrmE [Finegoldia magna BVS033A4] gi|302311200|gb|EFK93220.1| tRNA modification GTPase TrmE [Finegoldia magna ACS-171-V-Col3] gi|302494182|gb|EFL53960.1| tRNA modification GTPase TrmE [Finegoldia magna BVS033A4] Length = 452 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 50/162 (30%), Positives = 88/162 (54%), Gaps = 8/162 (4%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 I+G PNVGKS+L N L+K+ A+V + PG TRD + ++G+ I DTAGI D ++ Sbjct: 222 IIGKPNVGKSSLLNALLKENRAIVTDIPGTTRDVIEEYIDLDGISLKINDTAGIRDTED- 280 Query: 67 SIAKQMNDQTELA-INEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 I +++ + ++ I+++ LI+ + DS D I +R K I++ NK+D Sbjct: 281 -IVEKIGVEKSVSFISDSDLIIAIFDSSREFDDEDRKILDLIRDK--KSIVLLNKIDL-- 335 Query: 126 AQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKY 167 F +L+ E++ S +++ G +L + I ++F Y Sbjct: 336 -DGEFDVDENLEGIEVIHTSIKNNEGIEDLENKIIEMFNDGY 376 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 54/184 (29%), Positives = 93/184 (50%), Gaps = 17/184 (9%) Query: 191 SEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKN 250 SE + + I + ++G+PNVGKS+L+N LL NR + G TRD + + Sbjct: 205 SESANRGRIIRDGINTTIIGKPNVGKSSLLNALLKENRAIVTDIPGTTRDVIEEYIDLDG 264 Query: 251 HPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSV 310 ++I DTAG+R I E + V+KS+ + + I + D++ F+ +D +I+D + Sbjct: 265 ISLKINDTAGIRDTEDIVEKI---GVEKSVSFISDSDLIIAIFDSSREFDDEDRKILDLI 321 Query: 311 FNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVS 370 + ++VL LNK D+ D +NL I I+ S + EG++DL Sbjct: 322 RDK-KSIVL-LNKIDL---------DGEFDVDENLEGIEVIH---TSIKNNEGIEDLENK 367 Query: 371 VLEI 374 ++E+ Sbjct: 368 IIEM 371 >gi|262067524|ref|ZP_06027136.1| GTP-binding protein Era [Fusobacterium periodonticum ATCC 33693] gi|291378787|gb|EFE86305.1| GTP-binding protein Era [Fusobacterium periodonticum ATCC 33693] Length = 297 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 53/179 (29%), Positives = 95/179 (53%), Gaps = 13/179 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N+LV +K+A+V + G TRD + G + + +DT GI + Sbjct: 6 IAIVGRPNVGKSTLINKLVAEKVAIVSDKAGTTRDNIKGILNVKDNQYIFIDTPGIHKPQ 65 Query: 65 NCSIAKQMNDQTELAIN---EAHLILFLIDSKAGITPYDHAITSFLRK-KNIPIIIVSNK 120 + + + M T +A+N + +ILFL+D+ I D + +++ N P I++ NK Sbjct: 66 HL-LGEYM---TNIAVNILKDVDIILFLVDASKSIGTGDIFVMDRIKENSNKPRILLVNK 121 Query: 121 MDTRIAQRNFYEIYSLD-----FKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEM 174 +D ++ ++ ++ F +I+ SA + G ++L + ++ +P +M Sbjct: 122 VDLISDEQKAEKLKEIEEKLGKFDKIIFASAMYSFGIAQLLEALDPYLEEGVKYYPDDM 180 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 40/126 (31%), Positives = 71/126 (56%), Gaps = 4/126 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA+VGRPNVGKSTLIN+L+ + ++G TRD++ N K++ DT G+ KP Sbjct: 6 IAIVGRPNVGKSTLINKLVAEKVAIVSDKAGTTRDNIKGILNVKDNQYIFIDTPGIHKPQ 65 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSV-FNTGHAVVLALNKW 324 + L + ++ ++ + + L+DA+ D+ ++D + N+ +L +NK Sbjct: 66 HL---LGEYMTNIAVNILKDVDIILFLVDASKSIGTGDIFVMDRIKENSNKPRILLVNKV 122 Query: 325 DMVSDK 330 D++SD+ Sbjct: 123 DLISDE 128 >gi|170077145|ref|YP_001733783.1| GTP-binding protein Era [Synechococcus sp. PCC 7002] gi|169884814|gb|ACA98527.1| GTP-binding protein Era [Synechococcus sp. PCC 7002] Length = 313 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 49/169 (28%), Positives = 83/169 (49%), Gaps = 6/169 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKSTL+N+L+G +T + TR+ + + I DT G+ KP Sbjct: 23 VALIGRPNVGKSTLMNQLIGQKVAITSPVAQTTRNRLRGILSTDQAQIIFVDTPGIHKPH 82 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + VK + +V + + ++D +P K D I D + T V+L +NK D Sbjct: 83 ---HELGKILVKNARSTVGAVDLVVFIVDGAVPLGKGDQFIADFLVKTEAKVILGVNKID 139 Query: 326 MVSDKL-NLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 DK +L + A +N Q+ + + ++G L D ++ L+ Sbjct: 140 QRPDKRPEILASYQALATQNHWQLQE--FSALAGDRLPELQDKLIQALD 186 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/124 (31%), Positives = 62/124 (50%), Gaps = 1/124 (0%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A++G PNVGKSTL N+L+ +K+A+ TR+RL G + VDT GI Sbjct: 23 VALIGRPNVGKSTLMNQLIGQKVAITSPVAQTTRNRLRGILSTDQAQIIFVDTPGIHK-P 81 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + K + + L++F++D + D I FL K +I+ NK+D R Sbjct: 82 HHELGKILVKNARSTVGAVDLVVFIVDGAVPLGKGDQFIADFLVKTEAKVILGVNKIDQR 141 Query: 125 IAQR 128 +R Sbjct: 142 PDKR 145 >gi|158336712|ref|YP_001517886.1| GTP-binding protein Era [Acaryochloris marina MBIC11017] gi|158306953|gb|ABW28570.1| GTP-binding protein Era-like protein [Acaryochloris marina MBIC11017] Length = 315 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 43/133 (32%), Positives = 69/133 (51%), Gaps = 3/133 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N+L+ +K+A+ TR+RL G VDT GI Sbjct: 22 VAIVGRPNVGKSTLMNQLIGQKIAITSPVAQTTRNRLRGILTTPTAQMIFVDTPGIHKPH 81 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + + + +AI+ ++LF++D + D I L + N P+I+ NK+D Sbjct: 82 H-QLGEILVKNARMAIHAVDVVLFVVDCSEPLGGGDRFIAQLLAQTNTPVILGLNKLD-- 138 Query: 125 IAQRNFYEIYSLD 137 I ++ + +LD Sbjct: 139 IQRKTAQQALTLD 151 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VGRPNVGKSTL+N+L+G +T + TR+ + + DT G+ KP Sbjct: 22 VAIVGRPNVGKSTLMNQLIGQKIAITSPVAQTTRNRLRGILTTPTAQMIFVDTPGIHKPH 81 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + VK + ++ + + ++D + P D I + T V+L LNK D Sbjct: 82 ---HQLGEILVKNARMAIHAVDVVLFVVDCSEPLGGGDRFIAQLLAQTNTPVILGLNKLD 138 Query: 326 M 326 + Sbjct: 139 I 139 >gi|85057390|ref|YP_456306.1| GTP-binding protein Era [Aster yellows witches'-broom phytoplasma AYWB] gi|84789495|gb|ABC65227.1| GTP-binding protein Era [Aster yellows witches'-broom phytoplasma AYWB] Length = 295 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 56/181 (30%), Positives = 91/181 (50%), Gaps = 8/181 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAI+G PNVGKSTL N L ++K+A+ P TR+++ G + + VDT GI K Sbjct: 12 IAILGRPNVGKSTLLNALTQQKVAITSAKPQTTRNKIIGICHDSNAQYIFVDTPGINQYK 71 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + ++MN+ +I + LILFL DS D F KK + ++I NK+D+ Sbjct: 72 HL-LNQKMNNIVFQSIKDVDLILFLTDSFYHPKEEDLLKIIFQTKKTVFLVI--NKIDSL 128 Query: 125 IAQRNFYEIY-----SLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNK 179 ++ I F+ ++ +SA T+ L I++ K +P +MI + K Sbjct: 129 KSKSQIDAIILSYLNHFSFQTVIPLSAIKAKNTTFLKENIYQNIKPGVAYYPKDMITDQK 188 Query: 180 R 180 + Sbjct: 189 K 189 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 62/125 (49%), Gaps = 5/125 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++GRPNVGKSTL+N L +T ++ TR+ + + N DT G+ + Sbjct: 12 IAILGRPNVGKSTLLNALTQQKVAITSAKPQTTRNKIIGICHDSNAQYIFVDTPGINQYK 71 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + L QK QS++ + + L D+ +++DL + +F T V L +NK D Sbjct: 72 HL---LNQKMNNIVFQSIKDVDLILFLTDSFYHPKEEDL--LKIIFQTKKTVFLVINKID 126 Query: 326 MVSDK 330 + K Sbjct: 127 SLKSK 131 >gi|319651095|ref|ZP_08005229.1| TRNA modification GTPase [Bacillus sp. 2_A_57_CT2] gi|317397265|gb|EFV77969.1| TRNA modification GTPase [Bacillus sp. 2_A_57_CT2] Length = 461 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 47/157 (29%), Positives = 79/157 (50%), Gaps = 3/157 (1%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PNVGKS+L N LV + A+V + PG TRD + + GV +VDTAGI + ++ Sbjct: 228 IVGRPNVGKSSLLNSLVHENKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDI 287 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 + + +++ + EA LIL +++ +T D I + ++ +I+ +D +I Sbjct: 288 -VERIGVEKSRQVLKEADLILLVLNYSDELTSEDENIFKAVEGMDVIVIVNKTDLDQKID 346 Query: 127 QRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 E+ ++V S D G +L I +F Sbjct: 347 MNRVRELSK--HHKLVTTSLLEDQGVDDLEEAIASLF 381 Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 41/129 (31%), Positives = 71/129 (55%), Gaps = 5/129 (3%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L +VGRPNVGKS+L+N L+ N+ + G TRD + N + P+ + D Sbjct: 218 KILREGLSTVIVGRPNVGKSSLLNSLVHENKAIVTDIPGTTRDVIEEYVNVRGVPLRLVD 277 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ I E + V+KS Q ++ + +++L+ + +D I +V G V Sbjct: 278 TAGIRETEDIVERI---GVEKSRQVLKEADLILLVLNYSDELTSEDENIFKAV--EGMDV 332 Query: 318 VLALNKWDM 326 ++ +NK D+ Sbjct: 333 IVIVNKTDL 341 >gi|317128319|ref|YP_004094601.1| GTP-binding protein Era [Bacillus cellulosilyticus DSM 2522] gi|315473267|gb|ADU29870.1| GTP-binding protein Era [Bacillus cellulosilyticus DSM 2522] Length = 298 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 52/163 (31%), Positives = 81/163 (49%), Gaps = 9/163 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIIN--GVIFNIVDTAGIAD 62 +A++G PNVGKSTL N ++ +K+A++ + TR+R+ G + VIF +DT GI Sbjct: 8 VALIGRPNVGKSTLLNEVLGQKIAIMSDKAQTTRNRIQGVYTEDRGQVIF--IDTPGIHK 65 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 K+ + M + + E ILFL+D+K G D I L+ PI ++ NK+D Sbjct: 66 PKH-RLGDFMMKIAQTTLKEVDAILFLVDAKEGRGKGDEFIMEKLKHVTTPIFLIVNKID 124 Query: 123 TRIAQRNFYEI----YSLDFKEIVEISAEHDLGTSELHSVIFK 161 F I +F E++ ISA + L +FK Sbjct: 125 EVHPDELFLLIDDYRKRFEFTEVIPISALYGNNVETLLDQVFK 167 Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 39/132 (29%), Positives = 67/132 (50%), Gaps = 4/132 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKSTL+N +LG + ++ TR+ + + + DT G+ KP Sbjct: 8 VALIGRPNVGKSTLLNEVLGQKIAIMSDKAQTTRNRIQGVYTEDRGQVIFIDTPGIHKPK 67 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L +K + +++ + + L+DA K D I++ + + + L +NK D Sbjct: 68 H---RLGDFMMKIAQTTLKEVDAILFLVDAKEGRGKGDEFIMEKLKHVTTPIFLIVNKID 124 Query: 326 MVS-DKLNLLQD 336 V D+L LL D Sbjct: 125 EVHPDELFLLID 136 >gi|251782601|ref|YP_002996904.1| tRNA modification GTPase TrmE [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391231|dbj|BAH81690.1| tRNA(5-carboxymethylaminomethyl-2-thiouridylate)synthase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 458 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 45/144 (31%), Positives = 84/144 (58%), Gaps = 6/144 (4%) Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 +S EN+ K K + + L A++GRPNVGKS+L+N LL ++ + +G TRD + Sbjct: 205 QSLLENLLRTAKRG-KILREGLSTAIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVI 263 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 N K P+++ DTAG+R+ + +EQ V++S ++++ + +++L+A+ Q Sbjct: 264 EEYVNIKGVPLKLVDTAGIRETDDL---VEQIGVERSKKALQEADLVLLVLNASEKLTDQ 320 Query: 303 DLRIVDSVFNTGHAVVLALNKWDM 326 D R + ++ + ++L LNK D+ Sbjct: 321 D-RALLNLSQDSNRIIL-LNKTDL 342 Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 42/118 (35%), Positives = 71/118 (60%), Gaps = 5/118 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+++ A+V + G TRD + I GV +VDTAGI + + Sbjct: 228 AIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPLKLVDTAGIRETDD 287 Query: 66 CSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + +Q+ ++++ A+ EA L+L ++++ +T D A+ + + N II+ NK D Sbjct: 288 --LVEQIGVERSKKALQEADLVLLVLNASEKLTDQDRALLNLSQDSN--RIILLNKTD 341 >gi|313635544|gb|EFS01763.1| tRNA modification GTPase TrmE [Listeria seeligeri FSL N1-067] Length = 457 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 39/132 (29%), Positives = 75/132 (56%), Gaps = 5/132 (3%) Query: 195 SSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIE 254 S K + + L A++GRPNVGKS+L+N+L+ + + +G TRD + N + P+ Sbjct: 211 SQGKILREGLATAIIGRPNVGKSSLLNQLIQEEKAIVTDIAGTTRDIIEEYVNVRGVPLR 270 Query: 255 IFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTG 314 + DTAG+R+ I E + V++S ++++ + +++L+ +D + ++ +G Sbjct: 271 LIDTAGIRETEDIVEKI---GVERSRKALKDADFILLVLNQNEELTIEDEALFEAA--SG 325 Query: 315 HAVVLALNKWDM 326 H V+ LNK D+ Sbjct: 326 HNYVVVLNKTDL 337 Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 43/158 (27%), Positives = 81/158 (51%), Gaps = 3/158 (1%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N+L++++ A+V + G TRD + + GV ++DTAGI + ++ Sbjct: 223 AIIGRPNVGKSSLLNQLIQEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAGIRETED 282 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 + K +++ A+ +A IL +++ +T D A+ N +++ ++ ++ Sbjct: 283 I-VEKIGVERSRKALKDADFILLVLNQNEELTIEDEALFEAASGHNYVVVLNKTDLEQKL 341 Query: 126 AQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 E+ + +VE S D G L I +F Sbjct: 342 DIERVRELAGAN--PVVETSLIKDEGLEALEDAIKTLF 377 >gi|304413541|ref|ZP_07395014.1| GTP-binding protein [Candidatus Regiella insecticola LSR1] gi|304284384|gb|EFL92777.1| GTP-binding protein [Candidatus Regiella insecticola LSR1] Length = 310 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 41/118 (34%), Positives = 63/118 (53%), Gaps = 1/118 (0%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N L+ +K+++ P TR R+ G +DT G+ + Sbjct: 12 VAIVGRPNVGKSTLLNALLGQKVSITSRKPQTTRHRIMGIHTEGAYQTIYIDTPGLHIEE 71 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 +I + MN AI + LI+F+++ I D + + L N P+++V NKMD Sbjct: 72 KRAINRLMNRAASSAIGDVELIIFVVEGTHWIAD-DEMVMNKLSHVNCPVLLVINKMD 128 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 39/130 (30%), Positives = 63/130 (48%), Gaps = 5/130 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMR-KP 264 +A+VGRPNVGKSTL+N LLG +T + TR + + DT G+ + Sbjct: 12 VAIVGRPNVGKSTLLNALLGQKVSITSRKPQTTRHRIMGIHTEGAYQTIYIDTPGLHIEE 71 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 R L + ++ V E I +++ T + D +++ + + V+L +NK Sbjct: 72 KRAINRLMNRAASSAIGDV---ELIIFVVEGT-HWIADDEMVMNKLSHVNCPVLLVINKM 127 Query: 325 DMVSDKLNLL 334 D V+DK LL Sbjct: 128 DNVTDKAKLL 137 >gi|262282704|ref|ZP_06060472.1| GTP-binding protein [Streptococcus sp. 2_1_36FAA] gi|262261995|gb|EEY80693.1| GTP-binding protein [Streptococcus sp. 2_1_36FAA] Length = 299 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 48/178 (26%), Positives = 87/178 (48%), Gaps = 5/178 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKST N ++ +K+A++ + TR+++ G + +DT GI K Sbjct: 8 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 ++ M + + E +LF++ + D I L+ +P+I+V NK+D Sbjct: 68 -TALGDFMVEAAYSTLREVDTVLFMVPADEPRGKGDDMIIERLKAAKVPVILVVNKIDKV 126 Query: 125 IAQRNFYEI----YSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 + +I +DFKEIV ISA S L ++ + ++ + P + I ++ Sbjct: 127 HPDQLLAQIDDFRQQMDFKEIVPISALQGNNVSHLVDILSENLEEGFQYFPADQITDH 184 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKST +N ++G + ++ TR+ + + I DT G+ KP Sbjct: 8 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +L V+ + ++R +T + ++ A P K D I++ + V+L +NK D Sbjct: 68 ---TALGDFMVEAAYSTLREVDTVLFMVPADEPRGKGDDMIIERLKAAKVPVILVVNKID 124 Query: 326 MV 327 V Sbjct: 125 KV 126 >gi|56421023|ref|YP_148341.1| GTP-binding protein [Geobacillus kaustophilus HTA426] gi|56380865|dbj|BAD76773.1| GTP-binding protein [Geobacillus kaustophilus HTA426] Length = 302 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 45/148 (30%), Positives = 78/148 (52%), Gaps = 9/148 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKST NR++ +K+A++ + P TR+++ G + +DT G+ K Sbjct: 11 VAIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKIQGVYTDDDAQIIFIDTPGVHKPK 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + M A+ E LILF+++++ G + I L++ + P+ +V NK+D Sbjct: 71 H-KLGDFMMKVALNALREVDLILFMVNAEEGFGRGEAFIIERLKEVDTPVFLVINKIDRV 129 Query: 125 IAQR------NFYEIYSLDFKEIVEISA 146 + ++Y F EIV ISA Sbjct: 130 HPDELLPLIDRYKDLYP--FAEIVPISA 155 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 81/169 (47%), Gaps = 10/169 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKST +NR++G + + TR+ + + + I DT G+ KP Sbjct: 11 VAIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKIQGVYTDDDAQIIFIDTPGVHKPK 70 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L +K ++ ++R + + +++A F + + I++ + V L +NK D Sbjct: 71 ---HKLGDFMMKVALNALREVDLILFMVNAEEGFGRGEAFIIERLKEVDTPVFLVINKID 127 Query: 326 MVS-DKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 V D+L L D R K + + I IS G +D L+ + E Sbjct: 128 RVHPDELLPLID-RYKDLYPFAE-----IVPISALEGNNVDRLLEQIKE 170 >gi|77406399|ref|ZP_00783459.1| tRNA modification GTPase TrmE [Streptococcus agalactiae H36B] gi|77174990|gb|EAO77799.1| tRNA modification GTPase TrmE [Streptococcus agalactiae H36B] Length = 458 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 42/117 (35%), Positives = 70/117 (59%), Gaps = 3/117 (2%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L++++ A+V + G TRD + I GV +VDTAGI D + Sbjct: 228 AIIGRPNVGKSSLLNNLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLVDTAGIRDTDD 287 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + K ++++ A+ EA L+L +++S +T D ++ ++ N I++ NK D Sbjct: 288 I-VEKIGVERSKKALEEADLVLLVLNSSEPLTLQDRSLLELSKESN--RIVLLNKTD 341 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 40/129 (31%), Positives = 72/129 (55%), Gaps = 5/129 (3%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L A++GRPNVGKS+L+N LL + + G TRD + N K P+++ D Sbjct: 219 KILREGLSTAIIGRPNVGKSSLLNNLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLVD 278 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R I E + V++S +++ + +++L+++ P QD +++ + V Sbjct: 279 TAGIRDTDDIVEKI---GVERSKKALEEADLVLLVLNSSEPLTLQDRSLLELSKESNRIV 335 Query: 318 VLALNKWDM 326 + LNK D+ Sbjct: 336 L--LNKTDL 342 >gi|256851670|ref|ZP_05557058.1| tRNA modification GTPase TrmE [Lactobacillus jensenii 27-2-CHN] gi|260661613|ref|ZP_05862525.1| tRNA modification GTPase TrmE [Lactobacillus jensenii 115-3-CHN] gi|256615628|gb|EEU20817.1| tRNA modification GTPase TrmE [Lactobacillus jensenii 27-2-CHN] gi|260547670|gb|EEX23648.1| tRNA modification GTPase TrmE [Lactobacillus jensenii 115-3-CHN] Length = 460 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 45/120 (37%), Positives = 67/120 (55%), Gaps = 3/120 (2%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AIVG PNVGKS+L N L + A+V + G TRD L I GV ++DTAGI ++ Sbjct: 227 AIVGRPNVGKSSLLNYLTQDDKAIVTDVAGTTRDTLEEYVSIRGVPLKLIDTAGIHHTED 286 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 + K ++++ AI +A L+L L+++ +T D + + KN I+V NK D I Sbjct: 287 -KVEKIGVERSKKAIEQADLVLLLLNASEALTTEDEKLIDY--TKNKKRIVVLNKADLGI 343 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 87/164 (53%), Gaps = 9/164 (5%) Query: 167 YPNHPLEMIENNKRNEESPK--ENITSEGKSS--VKNISKPLRIAVVGRPNVGKSTLINR 222 YP + + + + E S K E I K++ K + L A+VGRPNVGKS+L+N Sbjct: 183 YPEYDADQVTATQMQETSKKVIEAINRLLKTANQGKIMRNGLATAIVGRPNVGKSSLLNY 242 Query: 223 LLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQS 282 L ++ + +G TRD++ + + P+++ DTAG+ + +E+ V++S ++ Sbjct: 243 LTQDDKAIVTDVAGTTRDTLEEYVSIRGVPLKLIDTAGIHHTE---DKVEKIGVERSKKA 299 Query: 283 VRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 + + ++LL+A+ +D +++D N VV LNK D+ Sbjct: 300 IEQADLVLLLLNASEALTTEDEKLIDYTKNKKRIVV--LNKADL 341 >gi|170697748|ref|ZP_02888835.1| tRNA modification GTPase TrmE [Burkholderia ambifaria IOP40-10] gi|170137363|gb|EDT05604.1| tRNA modification GTPase TrmE [Burkholderia ambifaria IOP40-10] Length = 464 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 49/188 (26%), Positives = 88/188 (46%), Gaps = 14/188 (7%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + L + + G+PNVGKS+L+N L G + +G TRD V+ + + P+ I DTA Sbjct: 223 LREGLSVVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTA 282 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R+ + +E+ + ++ + + + LLD+ D ++ + F G VV Sbjct: 283 GLRETE---DEVERIGIARTWSEIERADVVLHLLDSRTGMTADD-EVIAARFPGGVPVVR 338 Query: 320 ALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWK 379 LNK D+ +++ GD+ +S + G+G+D L +L I W+ Sbjct: 339 VLNKTDLTG---------VPACVEHPAAEGDLTEVHLSAKRGDGIDMLRTELLRIAG-WQ 388 Query: 380 TRITTSYL 387 YL Sbjct: 389 AGAEGVYL 396 Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 39/123 (31%), Positives = 68/123 (55%), Gaps = 10/123 (8%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 ++ + G PNVGKS+L N L ++A+V G TRD++ + G+ +I+DTAG+ + Sbjct: 228 SVVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRET 287 Query: 64 KN----CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 ++ IA+ ++ I A ++L L+DS+ G+T D I + +P++ V N Sbjct: 288 EDEVERIGIARTWSE-----IERADVVLHLLDSRTGMTADDEVIAARF-PGGVPVVRVLN 341 Query: 120 KMD 122 K D Sbjct: 342 KTD 344 >gi|94994338|ref|YP_602436.1| tRNA modification GTPase TrmE [Streptococcus pyogenes MGAS10750] gi|166234825|sp|Q1J6U1|MNME_STRPF RecName: Full=tRNA modification GTPase mnmE gi|94547846|gb|ABF37892.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase [Streptococcus pyogenes MGAS10750] Length = 458 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 45/144 (31%), Positives = 84/144 (58%), Gaps = 6/144 (4%) Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 +S EN+ K K + + L A++GRPNVGKS+L+N LL ++ + +G TRD + Sbjct: 205 QSLLENLLRTAKRG-KILREGLSTAIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVI 263 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 N K P+++ DTAG+R+ + +EQ V++S ++++ + +++L+A+ Q Sbjct: 264 EEYVNIKGVPLKLVDTAGIRETDDL---VEQIGVERSKKALQEADLVLLVLNASEKLTDQ 320 Query: 303 DLRIVDSVFNTGHAVVLALNKWDM 326 D R + ++ + ++L LNK D+ Sbjct: 321 D-RALLNLSQDSNRIIL-LNKTDL 342 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 42/118 (35%), Positives = 71/118 (60%), Gaps = 5/118 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+++ A+V + G TRD + I GV +VDTAGI + + Sbjct: 228 AIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPLKLVDTAGIRETDD 287 Query: 66 CSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + +Q+ ++++ A+ EA L+L ++++ +T D A+ + + N II+ NK D Sbjct: 288 --LVEQIGVERSKKALQEADLVLLVLNASEKLTDQDRALLNLSQDSN--RIILLNKTD 341 >gi|319947147|ref|ZP_08021381.1| thiophene and furan oxidation protein ThdF [Streptococcus australis ATCC 700641] gi|319747195|gb|EFV99454.1| thiophene and furan oxidation protein ThdF [Streptococcus australis ATCC 700641] Length = 457 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 71/120 (59%), Gaps = 5/120 (4%) Query: 207 AVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSR 266 A++GRPNVGKS+L+N LL + + G TRD + N P+++ DTAG+R+ Sbjct: 227 AIIGRPNVGKSSLLNNLLREEKAIVTDIEGTTRDVIEEYVNINGVPLKLVDTAGIRETED 286 Query: 267 ITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 I E + V++S ++++ + +++L+A+ P QD ++++ ++ ++ LNK D+ Sbjct: 287 IVERI---GVERSRKALKEADLVLLVLNASEPLTDQDRQLLEISQDSNR--IILLNKVDL 341 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 41/117 (35%), Positives = 70/117 (59%), Gaps = 3/117 (2%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L++++ A+V + G TRD + INGV +VDTAGI + ++ Sbjct: 227 AIIGRPNVGKSSLLNNLLREEKAIVTDIEGTTRDVIEEYVNINGVPLKLVDTAGIRETED 286 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + + +++ A+ EA L+L ++++ +T D + + N II+ NK+D Sbjct: 287 I-VERIGVERSRKALKEADLVLLVLNASEPLTDQDRQLLEISQDSN--RIILLNKVD 340 >gi|289436062|ref|YP_003465934.1| tRNA modification GTPase TrmE [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289172306|emb|CBH28852.1| tRNA modification GTPase TrmE [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 457 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 39/132 (29%), Positives = 75/132 (56%), Gaps = 5/132 (3%) Query: 195 SSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIE 254 S K + + L A++GRPNVGKS+L+N+L+ + + +G TRD + N + P+ Sbjct: 211 SQGKILREGLATAIIGRPNVGKSSLLNQLIQEEKAIVTDIAGTTRDIIEEYVNVRGVPLR 270 Query: 255 IFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTG 314 + DTAG+R+ I E + V++S ++++ + +++L+ +D + ++ +G Sbjct: 271 LIDTAGIRETEDIVEKI---GVERSRKALKDADFILLVLNQNEELTIEDEALFEAA--SG 325 Query: 315 HAVVLALNKWDM 326 H V+ LNK D+ Sbjct: 326 HNYVVVLNKTDL 337 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 44/158 (27%), Positives = 81/158 (51%), Gaps = 3/158 (1%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N+L++++ A+V + G TRD + + GV ++DTAGI + ++ Sbjct: 223 AIIGRPNVGKSSLLNQLIQEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAGIRETED 282 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 + K +++ A+ +A IL +++ +T D A+ N +++ ++ R+ Sbjct: 283 I-VEKIGVERSRKALKDADFILLVLNQNEELTIEDEALFEAASGHNYVVVLNKTDLEQRL 341 Query: 126 AQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 E+ + +VE S D G L I +F Sbjct: 342 DIERVRELAGAN--PVVETSLIKDEGLEALEDAIKTLF 377 >gi|73543138|ref|YP_297658.1| tRNA modification GTPase TrmE [Ralstonia eutropha JMP134] gi|123623715|sp|Q46VM0|MNME_RALEJ RecName: Full=tRNA modification GTPase mnmE gi|72120551|gb|AAZ62814.1| tRNA modification GTPase trmE [Ralstonia eutropha JMP134] Length = 475 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 43/126 (34%), Positives = 69/126 (54%), Gaps = 7/126 (5%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 ++ + G PNVGKS+L N L ++A+V G TRDR+ I G+ +I+DTAG+ D Sbjct: 222 SVVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDRVKETIQIEGIPLHIIDTAGLRDE 281 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDS----KAGITPYDHAITSFLRKK---NIPIII 116 + + ++T AI A ++L L+D+ + G++ D AI L + PI+ Sbjct: 282 ATDEVERIGIERTWDAIRRADIVLHLVDATDYLRHGLSEIDDAIDDRLSGQLPPGAPIVR 341 Query: 117 VSNKMD 122 V NK+D Sbjct: 342 VVNKID 347 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 48/175 (27%), Positives = 87/175 (49%), Gaps = 16/175 (9%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + L + + G+PNVGKS+L+N L G + +G TRD V + + P+ I DTA Sbjct: 217 LREGLSVVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDRVKETIQIEGIPLHIIDTA 276 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNT------ 313 G+R + T+ +E+ ++++ ++R + + L+DAT + + L +D + Sbjct: 277 GLRDEA--TDEVERIGIERTWDAIRRADIVLHLVDAT-DYLRHGLSEIDDAIDDRLSGQL 333 Query: 314 --GHAVVLALNKWDMVSDKLNLL-QDLRTKAI-KNLPQIGDIYINTISGRTGEGL 364 G +V +NK D+ ++ R + N P +I+ IS RTG G+ Sbjct: 334 PPGAPIVRVVNKIDVAPTVGGMMFSGNRPHVVAANGPNPTEIW---ISARTGSGI 385 >gi|294671265|ref|ZP_06736117.1| hypothetical protein NEIELOOT_02974 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291306992|gb|EFE48235.1| hypothetical protein NEIELOOT_02974 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 454 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 48/174 (27%), Positives = 88/174 (50%), Gaps = 11/174 (6%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + + + +VG PNVGKS+L+N L G + + +G TRD+V P+ I DTA Sbjct: 214 LREGMNVVLVGAPNVGKSSLLNALAGDDIAIVTDIAGTTRDTVREQITLDGVPVHIIDTA 273 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R+ + +EQ +++S ++V + ++L+D + I++S G + Sbjct: 274 GLRETDDV---VEQIGIERSRKAVSEADVALILIDPREGVNAKTQAILNS-LPAGLKKIE 329 Query: 320 ALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 NK D+ + + + D L Q G + ++S +TG GLD L ++L+ Sbjct: 330 IHNKADLTGEPVAVRSD-------GLAQTGADTVISLSAKTGAGLDLLKHALLQ 376 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 42/119 (35%), Positives = 70/119 (58%), Gaps = 4/119 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + +VGAPNVGKS+L N L +A+V + G TRD + Q ++GV +I+DTAG+ + Sbjct: 220 VVLVGAPNVGKSSLLNALAGDDIAIVTDIAGTTRDTVREQITLDGVPVHIIDTAGLRETD 279 Query: 65 NCSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + + +Q+ +++ A++EA + L LID + G+ AI + L + I + NK D Sbjct: 280 D--VVEQIGIERSRKAVSEADVALILIDPREGVNAKTQAILNSL-PAGLKKIEIHNKAD 335 >gi|94988539|ref|YP_596640.1| tRNA modification GTPase TrmE [Streptococcus pyogenes MGAS9429] gi|166234823|sp|Q1JLX3|MNME_STRPC RecName: Full=tRNA modification GTPase mnmE gi|94542047|gb|ABF32096.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase [Streptococcus pyogenes MGAS9429] Length = 458 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 45/144 (31%), Positives = 84/144 (58%), Gaps = 6/144 (4%) Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 +S EN+ K K + + L A++GRPNVGKS+L+N LL ++ + +G TRD + Sbjct: 205 QSLLENLLRTAKRG-KILREGLSTAIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVI 263 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 N K P+++ DTAG+R+ + +EQ V++S ++++ + +++L+A+ Q Sbjct: 264 EEYVNIKGVPLKLVDTAGIRETDDL---VEQIGVERSKKALQEADLVLLVLNASEKLTDQ 320 Query: 303 DLRIVDSVFNTGHAVVLALNKWDM 326 D R + ++ + ++L LNK D+ Sbjct: 321 D-RALLNLSQDSNRIIL-LNKTDL 342 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 42/118 (35%), Positives = 71/118 (60%), Gaps = 5/118 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+++ A+V + G TRD + I GV +VDTAGI + + Sbjct: 228 AIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPLKLVDTAGIRETDD 287 Query: 66 CSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + +Q+ ++++ A+ EA L+L ++++ +T D A+ + + N II+ NK D Sbjct: 288 --LVEQIGVERSKKALQEADLVLLVLNASEKLTDQDRALLNLSQDSN--RIILLNKTD 341 >gi|91784706|ref|YP_559912.1| GTP-binding protein Era [Burkholderia xenovorans LB400] gi|91688660|gb|ABE31860.1| GTP-binding protein Era [Burkholderia xenovorans LB400] Length = 299 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 44/150 (29%), Positives = 79/150 (52%), Gaps = 9/150 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N LV +K+++ TR R+ G + + VDT G Sbjct: 14 VAIVGRPNVGKSTLMNALVGQKVSITSRKAQTTRHRITGIHTLEDAQYIFVDTPGFQTKH 73 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + ++ + +N + ILF+I++ P D + + ++P ++++NK+D R Sbjct: 74 SGALNRSLNRAVTSTLTSVDAILFVIEA-GRFGPDDQKVLDLI-PPSVPTLLIANKLD-R 130 Query: 125 IAQRN-----FYEIYSLD-FKEIVEISAEH 148 ++ ++ ++ +L F EIV +SA+H Sbjct: 131 VSDKDSLFPFMQQVSALHKFAEIVPLSAKH 160 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 37/129 (28%), Positives = 70/129 (54%), Gaps = 4/129 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VGRPNVGKSTL+N L+G +T ++ TR ++ ++ DT G + + Sbjct: 14 VAIVGRPNVGKSTLMNALVGQKVSITSRKAQTTRHRITGIHTLEDAQYIFVDTPGFQ--T 71 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + + +L +++ +++ S T I+ + F D +++D + + +++A NK D Sbjct: 72 KHSGAL-NRSLNRAVTSTLTSVDAILFVIEAGRFGPDDQKVLDLIPPSVPTLLIA-NKLD 129 Query: 326 MVSDKLNLL 334 VSDK +L Sbjct: 130 RVSDKDSLF 138 >gi|288554601|ref|YP_003426536.1| tRNA modification GTPase TrmE [Bacillus pseudofirmus OF4] gi|288545761|gb|ADC49644.1| tRNA modification GTPase TrmE [Bacillus pseudofirmus OF4] Length = 456 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 47/157 (29%), Positives = 83/157 (52%), Gaps = 3/157 (1%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PNVGKS+L N LV ++ A+V + G TRD + + GV +VDTAGI + ++ Sbjct: 223 IVGRPNVGKSSLLNSLVHEEKAIVTDIAGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDM 282 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 + + +++ + EA LIL +++ ++ D A+ ++ N+ +I+ ++ +I Sbjct: 283 -VERIGVERSRQVLKEAELILLVLNYGEELSSEDEALFEAVKHLNVIVIVNKTDVEQKID 341 Query: 127 QRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 E+ + + +V S D G EL S I +F Sbjct: 342 LNRVRELA--EGRPVVTTSLIKDEGVDELESAIASLF 376 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 40/136 (29%), Positives = 75/136 (55%), Gaps = 6/136 (4%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L +VGRPNVGKS+L+N L+ + + +G TRD + N + P+ + D Sbjct: 213 KILREGLSTVIVGRPNVGKSSLLNSLVHEEKAIVTDIAGTTRDVIEEYVNVRGVPLRLVD 272 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ + E + V++S Q ++ E +++L+ +D + ++V + V Sbjct: 273 TAGIRETEDMVERI---GVERSRQVLKEAELILLVLNYGEELSSEDEALFEAVKHLN--V 327 Query: 318 VLALNKWDMVSDKLNL 333 ++ +NK D V K++L Sbjct: 328 IVIVNKTD-VEQKIDL 342 >gi|299820854|ref|ZP_07052743.1| tRNA modification GTPase TrmE [Listeria grayi DSM 20601] gi|299817875|gb|EFI85110.1| tRNA modification GTPase TrmE [Listeria grayi DSM 20601] Length = 457 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 49/160 (30%), Positives = 87/160 (54%), Gaps = 7/160 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N+L++++ A+V + G TRD + + GV ++DTAGI + ++ Sbjct: 223 AIIGRPNVGKSSLLNQLIQEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAGIRETED 282 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD--T 123 + K +++ A+ +A IL +++ +T D A+ F K ++V NK D + Sbjct: 283 I-VEKIGVERSRKALADADFILLVLNQNEALTIEDEAL--FEAAKGHTFVVVLNKTDLPS 339 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 +I ++ ++ + IVE S D G +L I +F Sbjct: 340 KIDRKQLEKLA--NGNAIVETSLLKDEGMRDLEEAINSLF 377 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 39/131 (29%), Positives = 73/131 (55%), Gaps = 5/131 (3%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L A++GRPNVGKS+L+N+L+ + + +G TRD + N + P+ + D Sbjct: 214 KILREGLATAIIGRPNVGKSSLLNQLIQEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLID 273 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ I E + V++S +++ + +++L+ +D + ++ GH Sbjct: 274 TAGIRETEDIVEKI---GVERSRKALADADFILLVLNQNEALTIEDEALFEAA--KGHTF 328 Query: 318 VLALNKWDMVS 328 V+ LNK D+ S Sbjct: 329 VVVLNKTDLPS 339 >gi|169825321|ref|YP_001692932.1| tRNA modification GTPase [Finegoldia magna ATCC 29328] gi|205829141|sp|B0S3V2|MNME_FINM2 RecName: Full=tRNA modification GTPase mnmE gi|167832126|dbj|BAG09042.1| tRNA modification GTPase [Finegoldia magna ATCC 29328] Length = 452 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 50/162 (30%), Positives = 88/162 (54%), Gaps = 8/162 (4%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 I+G PNVGKS+L N L+K+ A+V + PG TRD + ++G+ I DTAGI D ++ Sbjct: 222 IIGKPNVGKSSLLNALLKENRAIVTDIPGTTRDVIEEYIDLDGISLKINDTAGIRDTED- 280 Query: 67 SIAKQMNDQTELA-INEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 I +++ + ++ I+++ LI+ + DS D I +R K I++ NK+D Sbjct: 281 -IVEKIGVEKSVSFISDSDLIIAIFDSSREFDDEDRKILDLIRDK--KSIVLLNKIDL-- 335 Query: 126 AQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKY 167 F +L+ E++ S +++ G +L + I ++F Y Sbjct: 336 -DGEFDVDENLEGIEVIHTSIKNNEGIEDLENKIIEMFNDGY 376 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 54/184 (29%), Positives = 93/184 (50%), Gaps = 17/184 (9%) Query: 191 SEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKN 250 SE + + I + ++G+PNVGKS+L+N LL NR + G TRD + + Sbjct: 205 SESANRGRIIRDGINTTIIGKPNVGKSSLLNALLKENRAIVTDIPGTTRDVIEEYIDLDG 264 Query: 251 HPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSV 310 ++I DTAG+R I E + V+KS+ + + I + D++ F+ +D +I+D + Sbjct: 265 ISLKINDTAGIRDTEDIVEKI---GVEKSVSFISDSDLIIAIFDSSREFDDEDRKILDLI 321 Query: 311 FNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVS 370 + ++VL LNK D+ D +NL I I+ S + EG++DL Sbjct: 322 RDK-KSIVL-LNKIDL---------DGEFDVDENLEGIEVIH---TSIKNNEGIEDLENK 367 Query: 371 VLEI 374 ++E+ Sbjct: 368 IIEM 371 >gi|325689629|gb|EGD31633.1| thiophene and furan oxidation protein ThdF [Streptococcus sanguinis SK115] Length = 457 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 46/137 (33%), Positives = 83/137 (60%), Gaps = 7/137 (5%) Query: 207 AVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSR 266 A++GRPNVGKS+L+N LL ++ + G TRD + N K P+++ DTAG+R+ Sbjct: 227 AIIGRPNVGKSSLLNNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDD 286 Query: 267 ITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 + +EQ V++S ++++ + +++L+A+ QD ++++ + + +VL LNK D+ Sbjct: 287 L---VEQIGVERSKKALQEADLVLLVLNASELLTDQDKQLLE-ISQDSNRIVL-LNKTDL 341 Query: 327 VSDKLNLLQDLRTKAIK 343 +K+ L Q L AIK Sbjct: 342 -EEKIELDQ-LPADAIK 356 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 69/118 (58%), Gaps = 5/118 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+++ A+V + G TRD + I GV ++DTAGI + + Sbjct: 227 AIIGRPNVGKSSLLNNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDD 286 Query: 66 CSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + +Q+ ++++ A+ EA L+L ++++ +T D + + N I++ NK D Sbjct: 287 --LVEQIGVERSKKALQEADLVLLVLNASELLTDQDKQLLEISQDSN--RIVLLNKTD 340 >gi|325519719|gb|EGC99039.1| tRNA modification GTPase TrmE [Burkholderia sp. TJI49] Length = 464 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 50/188 (26%), Positives = 89/188 (47%), Gaps = 14/188 (7%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + L + + G+PNVGKS+L+N L G + +G TRD V+ + + P+ I DTA Sbjct: 223 LREGLSVVLAGQPNVGKSSLLNVLAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTA 282 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R+ + +E+ + ++ + + + LLD+ D+ I + F G VV Sbjct: 283 GLRETE---DEVERIGIARTWSEIERADVVLHLLDSRTGMTADDVAIA-ARFPDGVPVVR 338 Query: 320 ALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWK 379 LNK D+ ++++ GD+ +S + G+G+D L +L I W+ Sbjct: 339 VLNKTDLTG---------VPASVEHPAAEGDLTDVHLSAKRGDGIDLLRAELLRIAG-WQ 388 Query: 380 TRITTSYL 387 YL Sbjct: 389 AGAEGVYL 396 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 40/123 (32%), Positives = 69/123 (56%), Gaps = 10/123 (8%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 ++ + G PNVGKS+L N L ++A+V G TRD++ + G+ +I+DTAG+ + Sbjct: 228 SVVLAGQPNVGKSSLLNVLAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRET 287 Query: 64 KN----CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 ++ IA+ ++ I A ++L L+DS+ G+T D AI + +P++ V N Sbjct: 288 EDEVERIGIARTWSE-----IERADVVLHLLDSRTGMTADDVAIAARF-PDGVPVVRVLN 341 Query: 120 KMD 122 K D Sbjct: 342 KTD 344 >gi|330925757|ref|XP_003301179.1| hypothetical protein PTT_12622 [Pyrenophora teres f. teres 0-1] gi|311324284|gb|EFQ90706.1| hypothetical protein PTT_12622 [Pyrenophora teres f. teres 0-1] Length = 406 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 35/126 (27%), Positives = 71/126 (56%), Gaps = 4/126 (3%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 + +A++G PN GKS+L+NR++G + + ++G TRD V + + ++I D AG+RK Sbjct: 123 ISVALLGAPNAGKSSLLNRVVGRDAAIVSQEAGTTRDVVEVGLDLGGWLVKIGDMAGLRK 182 Query: 264 P----SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 + + ++E++ ++++ Q IV+ DAT + + + ++G V++ Sbjct: 183 AGLVGADVVGAVEKEGIRRAKQRALESNVVIVVQDATADVDPEVMVTAKQCVDSGIDVIV 242 Query: 320 ALNKWD 325 A+NK D Sbjct: 243 AINKTD 248 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 62/125 (49%), Gaps = 6/125 (4%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD- 62 ++A++GAPN GKS+L NR+V + A+V G TRD + + G + I D AG+ Sbjct: 124 SVALLGAPNAGKSSLLNRVVGRDAAIVSQEAGTTRDVVEVGLDLGGWLVKIGDMAGLRKA 183 Query: 63 ---GKNC--SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIV 117 G + ++ K+ + + E+++++ + D+ A + P I +I+ Sbjct: 184 GLVGADVVGAVEKEGIRRAKQRALESNVVIVVQDATADVDPEVMVTAKQCVDSGIDVIVA 243 Query: 118 SNKMD 122 NK D Sbjct: 244 INKTD 248 >gi|261365695|ref|ZP_05978578.1| tRNA modification GTPase TrmE [Neisseria mucosa ATCC 25996] gi|288565791|gb|EFC87351.1| tRNA modification GTPase TrmE [Neisseria mucosa ATCC 25996] Length = 454 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 48/174 (27%), Positives = 88/174 (50%), Gaps = 11/174 (6%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + + + +VG PNVGKS+L+N L G + + +G TRD+V P+ I DTA Sbjct: 214 LREGMNVVLVGAPNVGKSSLLNALAGDDIAIVTDIAGTTRDTVREQITLDGVPVHIIDTA 273 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R+ + +EQ +++S ++V + ++L+D + I++S G + Sbjct: 274 GLRETDDV---VEQIGIERSRKAVSEADVALILIDPREGLNAKTQAILNS-LPEGLKKIE 329 Query: 320 ALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 NK D+ + + + D L Q G + ++S +TG GLD L ++L+ Sbjct: 330 IHNKADLTGEPVAVRSD-------GLAQTGADTVISLSAKTGAGLDLLKHALLQ 376 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 42/119 (35%), Positives = 71/119 (59%), Gaps = 4/119 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + +VGAPNVGKS+L N L +A+V + G TRD + Q ++GV +I+DTAG+ + Sbjct: 220 VVLVGAPNVGKSSLLNALAGDDIAIVTDIAGTTRDTVREQITLDGVPVHIIDTAGLRETD 279 Query: 65 NCSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + + +Q+ +++ A++EA + L LID + G+ AI + L + + I + NK D Sbjct: 280 D--VVEQIGIERSRKAVSEADVALILIDPREGLNAKTQAILNSL-PEGLKKIEIHNKAD 335 >gi|78779761|ref|YP_397873.1| GTP-binding protein Era [Prochlorococcus marinus str. MIT 9312] gi|78713260|gb|ABB50437.1| GTP-binding protein Era [Prochlorococcus marinus str. MIT 9312] Length = 303 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 50/164 (30%), Positives = 85/164 (51%), Gaps = 9/164 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP- 264 + ++GRPNVGKSTLIN+L+G +T + TR+ + KN I DT G+ KP Sbjct: 9 VTLLGRPNVGKSTLINKLIGEKITITSPIAQTTRNKLKGILTTKNGQIIFVDTPGVHKPH 68 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 R+ E L VK + ++ + IV++D++ + D I++ + ++ALNKW Sbjct: 69 HRLGEIL----VKNAKSAINGVDMVIVVVDSSEEPGRGDEYIMNFLVANQTEFIVALNKW 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLM 368 D+V+++ + LR + I + +S GEG +L+ Sbjct: 125 DLVNEE---FRKLRLDQYRKFFGINRNF-QILSASQGEGCSELV 164 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 77/166 (46%), Gaps = 16/166 (9%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYG-QAIINGVIFNIVDTAGIADG 63 + ++G PNVGKSTL N+L+ +K+ + TR++L G NG I VDT G+ Sbjct: 9 VTLLGRPNVGKSTLINKLIGEKITITSPIAQTTRNKLKGILTTKNGQII-FVDTPGVHK- 66 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD- 122 + + + + + AIN +++ ++DS D I +FL I+ NK D Sbjct: 67 PHHRLGEILVKNAKSAINGVDMVIVVVDSSEEPGRGDEYIMNFLVANQTEFIVALNKWDL 126 Query: 123 -------TRIAQ-RNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 R+ Q R F+ I + +SA G SEL +++ Sbjct: 127 VNEEFRKLRLDQYRKFFGIN----RNFQILSASQGEGCSELVNMLL 168 >gi|237746715|ref|ZP_04577195.1| GTP-binding protein Era [Oxalobacter formigenes HOxBLS] gi|229378066|gb|EEO28157.1| GTP-binding protein Era [Oxalobacter formigenes HOxBLS] Length = 299 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 55/172 (31%), Positives = 83/172 (48%), Gaps = 13/172 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N L+ K+++ TR R+ G + F +DT G Sbjct: 14 IAIVGRPNVGKSTLMNELIGAKVSITSRKAQTTRHRIMGIQTDDDAQFIYIDTPGFQTRY 73 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLR--KKNIPIIIVSNKMD 122 N ++ K +N ++ A +ILF++D AG+ Y A L +N+P I+V NK D Sbjct: 74 NNALNKNLNRTVRDTLSTADVILFVVD--AGV--YGQADQQVLDLIPENVPTILVVNKTD 129 Query: 123 TRIAQRN----FYEIYSL--DFKEIVEISAEHDLGTSELHSVIFKIFKQKYP 168 ++ ++ F E + DF IV +SA + L I + + P Sbjct: 130 -KVKEKAELIPFAEKLAALRDFAAIVPVSARQRFQLNRLEEEIRHLLPENPP 180 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 36/129 (27%), Positives = 66/129 (51%), Gaps = 4/129 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA+VGRPNVGKSTL+N L+G +T ++ TR + + DT G + + Sbjct: 14 IAIVGRPNVGKSTLMNELIGAKVSITSRKAQTTRHRIMGIQTDDDAQFIYIDTPGFQ--T 71 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 R +L + + ++ T + + ++DA + + + D +++D + +L +NK D Sbjct: 72 RYNNALNKNLNRTVRDTLSTADVILFVVDAGV-YGQADQQVLD-LIPENVPTILVVNKTD 129 Query: 326 MVSDKLNLL 334 V +K L+ Sbjct: 130 KVKEKAELI 138 >gi|19746040|ref|NP_607176.1| tRNA modification GTPase TrmE [Streptococcus pyogenes MGAS8232] gi|94990416|ref|YP_598516.1| tRNA modification GTPase TrmE [Streptococcus pyogenes MGAS10270] gi|209559376|ref|YP_002285848.1| tRNA modification GTPase TrmE [Streptococcus pyogenes NZ131] gi|25009494|sp|Q8P161|MNME_STRP8 RecName: Full=tRNA modification GTPase mnmE gi|166234824|sp|Q1JH22|MNME_STRPD RecName: Full=tRNA modification GTPase mnmE gi|19748208|gb|AAL97675.1| putative thiophene degradation protein F [Streptococcus pyogenes MGAS8232] gi|94543924|gb|ABF33972.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase [Streptococcus pyogenes MGAS10270] gi|209540577|gb|ACI61153.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Streptococcus pyogenes NZ131] gi|323127423|gb|ADX24720.1| tRNA modification GTPase TrmE [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 458 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 45/144 (31%), Positives = 84/144 (58%), Gaps = 6/144 (4%) Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 +S EN+ K K + + L A++GRPNVGKS+L+N LL ++ + +G TRD + Sbjct: 205 QSLLENLLRTAKRG-KILREGLSTAIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVI 263 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 N K P+++ DTAG+R+ + +EQ V++S ++++ + +++L+A+ Q Sbjct: 264 EEYVNIKGVPLKLVDTAGIRETDDL---VEQIGVERSKKALQEADLVLLVLNASEKLTDQ 320 Query: 303 DLRIVDSVFNTGHAVVLALNKWDM 326 D R + ++ + ++L LNK D+ Sbjct: 321 D-RALLNLSQDSNRIIL-LNKTDL 342 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 42/118 (35%), Positives = 71/118 (60%), Gaps = 5/118 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+++ A+V + G TRD + I GV +VDTAGI + + Sbjct: 228 AIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPLKLVDTAGIRETDD 287 Query: 66 CSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + +Q+ ++++ A+ EA L+L ++++ +T D A+ + + N II+ NK D Sbjct: 288 --LVEQIGVERSKKALQEADLVLLVLNASEKLTDQDRALLNLSQDSN--RIILLNKTD 341 >gi|77407969|ref|ZP_00784719.1| tRNA modification GTPase TrmE [Streptococcus agalactiae COH1] gi|77173427|gb|EAO76546.1| tRNA modification GTPase TrmE [Streptococcus agalactiae COH1] Length = 458 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 42/117 (35%), Positives = 70/117 (59%), Gaps = 3/117 (2%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L++++ A+V + G TRD + I GV +VDTAGI D + Sbjct: 228 AIIGRPNVGKSSLLNNLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLVDTAGIRDTDD 287 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + K ++++ A+ EA L+L +++S +T D ++ ++ N I++ NK D Sbjct: 288 I-VEKIGVERSKKALEEADLVLLVLNSSEPLTLQDRSLLELSKESN--RIVLLNKTD 341 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 40/129 (31%), Positives = 72/129 (55%), Gaps = 5/129 (3%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L A++GRPNVGKS+L+N LL + + G TRD + N K P+++ D Sbjct: 219 KILREGLSTAIIGRPNVGKSSLLNNLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLVD 278 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R I E + V++S +++ + +++L+++ P QD +++ + V Sbjct: 279 TAGIRDTDDIVEKI---GVERSKKALEEADLVLLVLNSSEPLTLQDRSLLELSKESNRIV 335 Query: 318 VLALNKWDM 326 + LNK D+ Sbjct: 336 L--LNKTDL 342 >gi|306827423|ref|ZP_07460709.1| tRNA modification GTPase TrmE [Streptococcus pyogenes ATCC 10782] gi|304430368|gb|EFM33391.1| tRNA modification GTPase TrmE [Streptococcus pyogenes ATCC 10782] Length = 458 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 45/144 (31%), Positives = 84/144 (58%), Gaps = 6/144 (4%) Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 +S EN+ K K + + L A++GRPNVGKS+L+N LL ++ + +G TRD + Sbjct: 205 QSLLENLLRTAKRG-KILREGLSTAIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVI 263 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 N K P+++ DTAG+R+ + +EQ V++S ++++ + +++L+A+ Q Sbjct: 264 EEYVNIKGVPLKLVDTAGIRETDDL---VEQIGVERSKKALQEADLVLLVLNASEKLTDQ 320 Query: 303 DLRIVDSVFNTGHAVVLALNKWDM 326 D R + ++ + ++L LNK D+ Sbjct: 321 D-RALLNLSQDSNRIIL-LNKTDL 342 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 42/118 (35%), Positives = 71/118 (60%), Gaps = 5/118 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+++ A+V + G TRD + I GV +VDTAGI + + Sbjct: 228 AIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPLKLVDTAGIRETDD 287 Query: 66 CSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + +Q+ ++++ A+ EA L+L ++++ +T D A+ + + N II+ NK D Sbjct: 288 --LVEQIGVERSKKALQEADLVLLVLNASEKLTDQDRALLNLSQDSN--RIILLNKTD 341 >gi|291277158|ref|YP_003516930.1| putative thiophene and furan oxidation protein [Helicobacter mustelae 12198] gi|290964352|emb|CBG40202.1| putative thiophene and furan oxidation protein [Helicobacter mustelae 12198] Length = 441 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 33/102 (32%), Positives = 63/102 (61%), Gaps = 3/102 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 + +VG+PNVGKS+L+N +L R + + +G TRD++ H + I DTAG+R+ Sbjct: 205 LCIVGKPNVGKSSLLNAILMQERAIVSNVAGTTRDTIEEVIFIDGHLVRIIDTAGIREGG 264 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIV 307 ES+ V++S++++ + +V+ DA+ +++DL+I+ Sbjct: 265 DEIESI---GVQRSLRAIEKSDIVLVVFDASRRLDEEDLQII 303 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/105 (33%), Positives = 59/105 (56%), Gaps = 1/105 (0%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + + IVG PNVGKS+L N ++ ++ A+V N G TRD + I+G + I+DTAGI + Sbjct: 203 HVLCIVGKPNVGKSSLLNAILMQERAIVSNVAGTTRDTIEEVIFIDGHLVRIIDTAGIRE 262 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFL 107 G + I ++ AI ++ ++L + D+ + D I + L Sbjct: 263 GGD-EIESIGVQRSLRAIEKSDIVLVVFDASRRLDEEDLQIIAHL 306 >gi|288928132|ref|ZP_06421979.1| tRNA modification GTPase TrmE [Prevotella sp. oral taxon 317 str. F0108] gi|288330966|gb|EFC69550.1| tRNA modification GTPase TrmE [Prevotella sp. oral taxon 317 str. F0108] Length = 460 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 45/121 (37%), Positives = 71/121 (58%), Gaps = 4/121 (3%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 ++AIVG NVGKSTL NRL+K++ A+V + G TRD + ING+ F +DTAGI Sbjct: 227 SVAIVGKTNVGKSTLLNRLLKEERAIVSDIHGTTRDVIEDTIQINGINFRFIDTAGIRKT 286 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + I ++T + EA ++L++ID ++ + + + R K +I+VSNK D Sbjct: 287 SD-EIESLGIERTYQKLTEAAIVLWVIDKAPTLSEIEE-MNAHTRGKR--LIVVSNKTDA 342 Query: 124 R 124 + Sbjct: 343 Q 343 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/95 (36%), Positives = 50/95 (52%), Gaps = 5/95 (5%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 + I + +A+VG+ NVGKSTL+NRLL R + G TRD + + D Sbjct: 220 RAIKAGISVAIVGKTNVGKSTLLNRLLKEERAIVSDIHGTTRDVIEDTIQINGINFRFID 279 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVL 292 TAG+RK S ESL ++++ Q + E IVL Sbjct: 280 TAGIRKTSDEIESL---GIERTYQ--KLTEAAIVL 309 >gi|139473816|ref|YP_001128532.1| tRNA modification GTPase TrmE [Streptococcus pyogenes str. Manfredo] gi|166234826|sp|A2REM7|MNME_STRPG RecName: Full=tRNA modification GTPase mnmE gi|134272063|emb|CAM30302.1| tRNA modification GTPase TrmE [Streptococcus pyogenes str. Manfredo] Length = 458 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 45/144 (31%), Positives = 84/144 (58%), Gaps = 6/144 (4%) Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 +S EN+ K K + + L A++GRPNVGKS+L+N LL ++ + +G TRD + Sbjct: 205 QSLLENLLRTAKRG-KILREGLSTAIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVI 263 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 N K P+++ DTAG+R+ + +EQ V++S ++++ + +++L+A+ Q Sbjct: 264 EEYVNIKGVPLKLVDTAGIRETDDL---VEQIGVERSKKALQEADLVLLVLNASEKLTDQ 320 Query: 303 DLRIVDSVFNTGHAVVLALNKWDM 326 D R + ++ + ++L LNK D+ Sbjct: 321 D-RALLNLSQDSNRIIL-LNKTDL 342 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 42/118 (35%), Positives = 71/118 (60%), Gaps = 5/118 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+++ A+V + G TRD + I GV +VDTAGI + + Sbjct: 228 AIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPLKLVDTAGIRETDD 287 Query: 66 CSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + +Q+ ++++ A+ EA L+L ++++ +T D A+ + + N II+ NK D Sbjct: 288 --LVEQIGVERSKKALQEADLVLLVLNASEKLTDQDRALLNLSQDSN--RIILLNKTD 341 >gi|27262204|gb|AAN87383.1| thiopene and furan oxidation protein ThdF [Heliobacillus mobilis] Length = 472 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 48/175 (27%), Positives = 95/175 (54%), Gaps = 4/175 (2%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + I G PNVGKS+L N L+ ++ A+V + PG TRD + I G+ +VDTAGI + Sbjct: 225 WRTVIAGRPNVGKSSLLNALLDEQRAIVTDIPGTTRDAIEEFIEIGGIPLRLVDTAGIRE 284 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 ++ + K ++T + +A L+L+++D ++ D + L+++ P +++ NK D Sbjct: 285 TEDL-VEKIGVEKTREYMEKADLVLYVLDGSDELSNDDEELLRSLQER--PSVVLVNKSD 341 Query: 123 TRIAQRNFYEIYS-LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIE 176 I + + ++ + + K I+ +SA+ G EL I ++ + + L +++ Sbjct: 342 LAIRRLDEQQLRAVIGDKLIIYMSAKEGWGLEELAVQIRRLVYKDEAGNSLSIMD 396 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 52/168 (30%), Positives = 84/168 (50%), Gaps = 15/168 (8%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP 264 R + GRPNVGKS+L+N LL R + G TRD++ P+ + DTAG+R+ Sbjct: 226 RTVIAGRPNVGKSSLLNALLDEQRAIVTDIPGTTRDAIEEFIEIGGIPLRLVDTAGIRE- 284 Query: 265 SRITESLEQK-TVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 TE L +K V+K+ + + + + +LD + D ++ S+ V+ +NK Sbjct: 285 ---TEDLVEKIGVEKTREYMEKADLVLYVLDGSDELSNDDEELLRSLQE--RPSVVLVNK 339 Query: 324 WDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSV 371 D+ +L+ Q LR IGD I +S + G GL++L V + Sbjct: 340 SDLAIRRLD-EQQLRAV-------IGDKLIIYMSAKEGWGLEELAVQI 379 >gi|161525339|ref|YP_001580351.1| GTP-binding protein Era [Burkholderia multivorans ATCC 17616] gi|189349924|ref|YP_001945552.1| GTP-binding protein Era [Burkholderia multivorans ATCC 17616] gi|221201352|ref|ZP_03574391.1| GTP-binding protein Era [Burkholderia multivorans CGD2M] gi|221208832|ref|ZP_03581830.1| GTP-binding protein Era [Burkholderia multivorans CGD2] gi|221214087|ref|ZP_03587060.1| GTP-binding protein Era [Burkholderia multivorans CGD1] gi|160342768|gb|ABX15854.1| GTP-binding protein Era [Burkholderia multivorans ATCC 17616] gi|189333946|dbj|BAG43016.1| GTP-binding protein [Burkholderia multivorans ATCC 17616] gi|221166264|gb|EED98737.1| GTP-binding protein Era [Burkholderia multivorans CGD1] gi|221171288|gb|EEE03737.1| GTP-binding protein Era [Burkholderia multivorans CGD2] gi|221178620|gb|EEE11028.1| GTP-binding protein Era [Burkholderia multivorans CGD2M] Length = 299 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 45/149 (30%), Positives = 75/149 (50%), Gaps = 7/149 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N LV +K+++ TR R+ G + VDT G Sbjct: 14 IAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRITGINTTEDAQYIFVDTPGFQTRH 73 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + ++ + +N + ILF+I++ P D + + +P ++++NK+D Sbjct: 74 STALNRSLNRAVTSTLTSVDAILFVIEA-GRFGPDDQKVLDLI-PPGVPTLLIANKLDRV 131 Query: 125 IAQRNFY----EIYSL-DFKEIVEISAEH 148 + Y ++ +L +F EIV +SA+H Sbjct: 132 NDKTTLYPFMQQVSALREFAEIVPLSAKH 160 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 39/128 (30%), Positives = 67/128 (52%), Gaps = 4/128 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA+VGRPNVGKSTL+N L+G +T ++ TR ++ ++ DT G + + Sbjct: 14 IAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRITGINTTEDAQYIFVDTPGFQ--T 71 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 R + +L +++ +++ S T I+ + F D +++D + G +L NK D Sbjct: 72 RHSTAL-NRSLNRAVTSTLTSVDAILFVIEAGRFGPDDQKVLD-LIPPGVPTLLIANKLD 129 Query: 326 MVSDKLNL 333 V+DK L Sbjct: 130 RVNDKTTL 137 >gi|257875886|ref|ZP_05655539.1| tRNA modification GTPase mnmE [Enterococcus casseliflavus EC20] gi|257810052|gb|EEV38872.1| tRNA modification GTPase mnmE [Enterococcus casseliflavus EC20] Length = 481 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 51/178 (28%), Positives = 94/178 (52%), Gaps = 16/178 (8%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L A++GRPNVGKS+L+N LL + + +G TRD + N + P+++ D Sbjct: 238 KILREGLSTAIIGRPNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLID 297 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ + E + V++S +++ E +++L+ + ++D ++++ G Sbjct: 298 TAGIRETEDVVEKI---GVERSRKALAEAELILLVLNQSEGLTQEDKQLLE--LTAGSRR 352 Query: 318 VLALNKWDMVSDKLNLLQDLRTKAIKNLPQ-IGDIYINTISGRTGEGLDDLMVSVLEI 374 ++ LNK D+ KL A L Q D I ++S T EGLD L ++ ++ Sbjct: 353 IILLNKTDL-EPKL---------APAELAQYAADEPIFSVSVLTSEGLDQLEQAIADL 400 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 45/158 (28%), Positives = 82/158 (51%), Gaps = 3/158 (1%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L++++ A+V + G TRD + + GV ++DTAGI + ++ Sbjct: 247 AIIGRPNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETED 306 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 + K +++ A+ EA LIL +++ G+T D + I++ ++ ++ Sbjct: 307 V-VEKIGVERSRKALAEAELILLVLNQSEGLTQEDKQLLELTAGSRRIILLNKTDLEPKL 365 Query: 126 AQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 A + Y+ D + I +S G +L I +F Sbjct: 366 APAELAQ-YAAD-EPIFSVSVLTSEGLDQLEQAIADLF 401 >gi|297205279|ref|ZP_06922675.1| tRNA modification GTPase TrmE [Lactobacillus jensenii JV-V16] gi|297149857|gb|EFH30154.1| tRNA modification GTPase TrmE [Lactobacillus jensenii JV-V16] Length = 483 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 45/120 (37%), Positives = 67/120 (55%), Gaps = 3/120 (2%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AIVG PNVGKS+L N L + A+V + G TRD L I GV ++DTAGI ++ Sbjct: 250 AIVGRPNVGKSSLLNYLTQDDKAIVTDVAGTTRDTLEEYVSIRGVPLKLIDTAGIHHTED 309 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 + K ++++ AI +A L+L L+++ +T D + + KN I+V NK D I Sbjct: 310 -KVEKIGVERSKKAIEQADLVLLLLNASEALTTEDEKLIDY--TKNKKRIVVLNKADLGI 366 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 87/164 (53%), Gaps = 9/164 (5%) Query: 167 YPNHPLEMIENNKRNEESPK--ENITSEGKSS--VKNISKPLRIAVVGRPNVGKSTLINR 222 YP + + + + E S K E I K++ K + L A+VGRPNVGKS+L+N Sbjct: 206 YPEYDADQVTATQMQETSKKVIEAINRLLKTANQGKIMRNGLATAIVGRPNVGKSSLLNY 265 Query: 223 LLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQS 282 L ++ + +G TRD++ + + P+++ DTAG+ + +E+ V++S ++ Sbjct: 266 LTQDDKAIVTDVAGTTRDTLEEYVSIRGVPLKLIDTAGIHHTE---DKVEKIGVERSKKA 322 Query: 283 VRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 + + ++LL+A+ +D +++D N VV LNK D+ Sbjct: 323 IEQADLVLLLLNASEALTTEDEKLIDYTKNKKRIVV--LNKADL 364 >gi|163942056|ref|YP_001646940.1| GTP-binding protein Era [Bacillus weihenstephanensis KBAB4] gi|163864253|gb|ABY45312.1| GTP-binding protein Era [Bacillus weihenstephanensis KBAB4] Length = 301 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 43/148 (29%), Positives = 79/148 (53%), Gaps = 9/148 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 ++I+G PNVGKST NR++ +K+A++ + P TR+++ G N +DT GI K Sbjct: 11 VSIIGRPNVGKSTFLNRIIGQKIAIMSDKPQTTRNKIQGVYTENDSQVVFIDTPGIHKPK 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + M + + E ++LF++++ G + I L++ P+ +V NK+D Sbjct: 71 H-KLGDFMVKMAQTTLKEVDIVLFMVNATEGYGRGEEFIIEKLQETKQPVFLVINKIDQL 129 Query: 125 IAQR------NFYEIYSLDFKEIVEISA 146 ++ + ++Y +F EIV ISA Sbjct: 130 HPEQLLELIDQYRKLY--EFAEIVPISA 155 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/122 (25%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 ++++GRPNVGKST +NR++G + + TR+ + + + + DT G+ KP Sbjct: 11 VSIIGRPNVGKSTFLNRIIGQKIAIMSDKPQTTRNKIQGVYTENDSQVVFIDTPGIHKPK 70 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L VK + +++ + + +++AT + + + I++ + T V L +NK D Sbjct: 71 H---KLGDFMVKMAQTTLKEVDIVLFMVNATEGYGRGEEFIIEKLQETKQPVFLVINKID 127 Query: 326 MV 327 + Sbjct: 128 QL 129 >gi|323527917|ref|YP_004230070.1| tRNA modification GTPase TrmE [Burkholderia sp. CCGE1001] gi|323384919|gb|ADX57010.1| tRNA modification GTPase TrmE [Burkholderia sp. CCGE1001] Length = 464 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 50/166 (30%), Positives = 82/166 (49%), Gaps = 16/166 (9%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 ++ + G PNVGKS+L N L ++A+V G TRD++ I G+ +++DTAG+ D Sbjct: 228 SVVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQIEGIPLHVIDTAGLRDT 287 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD- 122 ++ + K +T I A ++L L+D++ G+T D I +P++ V NK D Sbjct: 288 ED-EVEKIGIARTWSEIERADVVLHLLDARTGMTAEDETIARRF-PAGVPVVRVLNKTDL 345 Query: 123 ------TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKI 162 TR +F D E V +SA+ G L + +I Sbjct: 346 VGLPPETRALDADF------DLSE-VRLSAKQGDGVGLLRGELLRI 384 Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 55/222 (24%), Positives = 95/222 (42%), Gaps = 23/222 (10%) Query: 114 IIIVSNKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLE 173 +I S + R A R+ +S D +VE + ++ + + P E Sbjct: 142 LIEASTEAAARSAGRSLEGAFSRDIHALVE------------EVITLRMLVEATLDFPEE 189 Query: 174 MIENNKRNEESPKENITSEGKSSVKN-------ISKPLRIAVVGRPNVGKSTLINRLLGY 226 I+ + + K E +SV + + L + + G+PNVGKS+L+N L G Sbjct: 190 EIDFLEAADARGKLARIRERLASVLTEARQGALLREGLSVVLAGQPNVGKSSLLNALAGA 249 Query: 227 NRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTC 286 + +G TRD V+ + + P+ + DTAG+R + +E+ + ++ + Sbjct: 250 ELAIVTPIAGTTRDKVAQTIQIEGIPLHVIDTAGLRDTE---DEVEKIGIARTWSEIERA 306 Query: 287 ETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVS 328 + + LLDA +D I F G VV LNK D+V Sbjct: 307 DVVLHLLDARTGMTAEDETIARR-FPAGVPVVRVLNKTDLVG 347 >gi|146328997|ref|YP_001209837.1| tRNA modification GTPase TrmE [Dichelobacter nodosus VCS1703A] gi|166991106|sp|A5EY43|MNME_DICNV RecName: Full=tRNA modification GTPase mnmE gi|146232467|gb|ABQ13445.1| tRNA modification GTPase TrmE [Dichelobacter nodosus VCS1703A] Length = 450 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 31/97 (31%), Positives = 57/97 (58%), Gaps = 3/97 (3%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 ++ + + + G+PN GKS+L+N LLG R + Q+G TRD V W P+ + DTA Sbjct: 213 LNDGIHLVLAGKPNAGKSSLLNALLGEERAIVTPQAGTTRDIVREDWIIDGIPVHLSDTA 272 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDAT 296 G+R+ + +EQ+ +++S +V+ + ++L D + Sbjct: 273 GLRESQDL---VEQEGIRRSFDAVKRADIVLLLADGS 306 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 52/90 (57%), Gaps = 1/90 (1%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + + G PN GKS+L N L+ ++ A+V G TRD + II+G+ ++ DTAG+ + + Sbjct: 219 LVLAGKPNAGKSSLLNALLGEERAIVTPQAGTTRDIVREDWIIDGIPVHLSDTAGLRESQ 278 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKA 94 + + ++ ++ A+ A ++L L D A Sbjct: 279 DL-VEQEGIRRSFDAVKRADIVLLLADGSA 307 >gi|332827207|gb|EGJ99981.1| tRNA modification GTPase mnmE [Dysgonomonas gadei ATCC BAA-286] Length = 463 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 54/164 (32%), Positives = 89/164 (54%), Gaps = 12/164 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G N GKSTL N L+ ++ A+V + G TRD + I G+ F ++DTAGI D Sbjct: 224 VAIIGETNAGKSTLLNLLLHEEKAIVSDIHGTTRDVIEDTINIQGLTFRLIDTAGIRDTT 283 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRK-----KNIPIIIVSN 119 + I ++T I +A++IL++ D + D I K KN +I+V N Sbjct: 284 D-EIESIGIERTFKKIEQANIILWITD----VGTADEHIRDLAEKILPAIKNQKLILVFN 338 Query: 120 KMDTRIAQR--NFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 K+D A+R N + + + + ISA+++ GT++L S++ K Sbjct: 339 KVDMISAERKDNKERLLKEEIPDRIFISAKYEQGTNDLESLLVK 382 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 49/217 (22%), Positives = 100/217 (46%), Gaps = 35/217 (16%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++G N GKSTL+N LL + + G TRD + + N + + DTAG+R Sbjct: 224 VAIIGETNAGKSTLLNLLLHEEKAIVSDIHGTTRDVIEDTINIQGLTFRLIDTAGIRDT- 282 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK-QDL--RIVDSVFNTGHAVVLALN 322 T+ +E ++++ + + + + D E +DL +I+ ++ N ++L N Sbjct: 283 --TDEIESIGIERTFKKIEQANIILWITDVGTADEHIRDLAEKILPAIKN--QKLILVFN 338 Query: 323 KWDMVS----------------DKL----------NLLQDLRTKAIKNLPQIGDIYINTI 356 K DM+S D++ N L+ L KA N+P+IG+ I Sbjct: 339 KVDMISAERKDNKERLLKEEIPDRIFISAKYEQGTNDLESLLVKA-ANIPEIGEQDIIVT 397 Query: 357 SGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQK 393 + R L++ + ++ + + + ++ +L+ +++ Sbjct: 398 NMRHYAALENALTAIKRVGEGLELHLSGDFLSQDIRE 434 >gi|323341065|ref|ZP_08081313.1| tRNA modification GTPase TrmE [Lactobacillus ruminis ATCC 25644] gi|323091486|gb|EFZ34110.1| tRNA modification GTPase TrmE [Lactobacillus ruminis ATCC 25644] Length = 462 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 74/132 (56%), Gaps = 5/132 (3%) Query: 195 SSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIE 254 S K + + L A+VGRPNVGKS+L+N LL ++ + +G TRD + N P++ Sbjct: 216 SQGKIMREGLATALVGRPNVGKSSLLNHLLHEDKAIVTDVAGTTRDVIEEYVNVSGVPLK 275 Query: 255 IFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTG 314 + DTAG+R+ + +E+ V++S +++ + +++L+A K+DL ++ Sbjct: 276 LIDTAGIRETD---DKVEKIGVERSKKAIEQSDLVLLVLNAAESLTKEDLELIR--LTND 330 Query: 315 HAVVLALNKWDM 326 ++ LNK D+ Sbjct: 331 KKRIIILNKTDL 342 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 52/185 (28%), Positives = 87/185 (47%), Gaps = 21/185 (11%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 A+VG PNVGKS+L N L+ + A+V + G TRD + ++GV ++DTAGI + + Sbjct: 228 ALVGRPNVGKSSLLNHLLHEDKAIVTDVAGTTRDVIEEYVNVSGVPLKLIDTAGIRETDD 287 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 + K ++++ AI ++ L+L ++++ +T D + K II+ NK D Sbjct: 288 -KVEKIGVERSKKAIEQSDLVLLVLNAAESLTKEDLELIRLTNDKK--RIIILNKTDLE- 343 Query: 126 AQRNFYEIYSLDFKEIVEISAEHDL---------GTSELHSVIFKIFKQKYPNHPLEMIE 176 LD KE+ +IS + G L I K+F N ++ Sbjct: 344 --------EKLDRKELAKISGNAPVYATSILKNEGVEALEEAISKLFFNGIENSQSTVMV 395 Query: 177 NNKRN 181 N R+ Sbjct: 396 TNARH 400 >gi|259907678|ref|YP_002648034.1| GTP-binding protein Era [Erwinia pyrifoliae Ep1/96] gi|224963300|emb|CAX54785.1| GTP-binding protein [Erwinia pyrifoliae Ep1/96] gi|283477529|emb|CAY73445.1| GTP-binding protein Era [Erwinia pyrifoliae DSM 12163] Length = 301 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 48/176 (27%), Positives = 87/176 (49%), Gaps = 6/176 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N+L+ +K+++ P TR R+ G VDT G+ + Sbjct: 11 IAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGIHTEGQYQAIYVDTPGLHMEE 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN +I + +++F+++ T D + + L+ +P+++ NK+D Sbjct: 71 KRAINRLMNRAASSSIGDVEMVIFVVEGTR-WTADDEMVLNKLKDGKVPVLLAINKVDNI 129 Query: 125 IAQRNF-----YEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 I + + ++F ++V ISAE + S++ K + + P + I Sbjct: 130 IDKSILLPHLQFLGQQMNFMDVVPISAEKGSNVDTIASIVRKRLPEAEHHFPEDYI 185 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/133 (29%), Positives = 67/133 (50%), Gaps = 3/133 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA+VGRPNVGKSTL+N+LLG +T + TR + + DT G+ Sbjct: 11 IAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGIHTEGQYQAIYVDTPGLHMEE 70 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + ++ + + + S+ E I +++ T + D +++ + + V+LA+NK D Sbjct: 71 K--RAINRLMNRAASSSIGDVEMVIFVVEGT-RWTADDEMVLNKLKDGKVPVLLAINKVD 127 Query: 326 MVSDKLNLLQDLR 338 + DK LL L+ Sbjct: 128 NIIDKSILLPHLQ 140 >gi|220928031|ref|YP_002504940.1| GTP-binding protein Era [Clostridium cellulolyticum H10] gi|254783293|sp|B8I736|ERA_CLOCE RecName: Full=GTPase Era gi|219998359|gb|ACL74960.1| GTP-binding protein Era [Clostridium cellulolyticum H10] Length = 298 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 48/147 (32%), Positives = 77/147 (52%), Gaps = 7/147 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 ++++G PNVGKSTL N + +K+A++ N P TR+ + G ++DT GI K Sbjct: 8 VSVIGRPNVGKSTLLNTITGQKIAIMSNKPQTTRNTIRGVITNKECQLILIDTPGIHKPK 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + M + I E LILFL+++ D I L++ P+ ++ NK+D Sbjct: 68 -TKLGEYMVNVASETIKEVDLILFLVEANTQPGAQDVNIIQQLKQIKTPVFLILNKVDL- 125 Query: 125 IAQRNFYEI---YS--LDFKEIVEISA 146 I++ I YS +DFK I+ ISA Sbjct: 126 ISKDKLLAIIDSYSKLMDFKAIIPISA 152 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 40/136 (29%), Positives = 71/136 (52%), Gaps = 4/136 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 ++V+GRPNVGKSTL+N + G + ++ TR+++ K + + DT G+ KP Sbjct: 8 VSVIGRPNVGKSTLLNTITGQKIAIMSNKPQTTRNTIRGVITNKECQLILIDTPGIHKPK 67 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + V + ++++ + + L++A QD+ I+ + V L LNK D Sbjct: 68 T---KLGEYMVNVASETIKEVDLILFLVEANTQPGAQDVNIIQQLKQIKTPVFLILNKVD 124 Query: 326 MVS-DKLNLLQDLRTK 340 ++S DKL + D +K Sbjct: 125 LISKDKLLAIIDSYSK 140 >gi|21910288|ref|NP_664556.1| tRNA modification GTPase TrmE [Streptococcus pyogenes MGAS315] gi|28895865|ref|NP_802215.1| tRNA modification GTPase TrmE [Streptococcus pyogenes SSI-1] gi|25453303|sp|Q8K7L5|MNME_STRP3 RecName: Full=tRNA modification GTPase mnmE gi|21904483|gb|AAM79359.1| putative thiophene degradation protein F [Streptococcus pyogenes MGAS315] gi|28811115|dbj|BAC64048.1| putative thiophene degradation protein F [Streptococcus pyogenes SSI-1] Length = 458 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 45/144 (31%), Positives = 84/144 (58%), Gaps = 6/144 (4%) Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 +S EN+ K K + + L A++GRPNVGKS+L+N LL ++ + +G TRD + Sbjct: 205 QSLLENLLRTAKRG-KILREGLSTAIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVI 263 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 N K P+++ DTAG+R+ + +EQ V++S ++++ + +++L+A+ Q Sbjct: 264 EEYVNIKGVPLKLVDTAGIRETDDL---VEQIGVERSKKALQEADLVLLVLNASEKLTDQ 320 Query: 303 DLRIVDSVFNTGHAVVLALNKWDM 326 D R + ++ + ++L LNK D+ Sbjct: 321 D-RALLNLSQDSNRIIL-LNKTDL 342 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 42/118 (35%), Positives = 71/118 (60%), Gaps = 5/118 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+++ A+V + G TRD + I GV +VDTAGI + + Sbjct: 228 AIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPLKLVDTAGIRETDD 287 Query: 66 CSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + +Q+ ++++ A+ EA L+L ++++ +T D A+ + + N II+ NK D Sbjct: 288 --LVEQIGVERSKKALQEADLVLLVLNASEKLTDQDRALLNLSQDSN--RIILLNKTD 341 >gi|313903264|ref|ZP_07836656.1| GTP-binding protein Era [Thermaerobacter subterraneus DSM 13965] gi|313466352|gb|EFR61874.1| GTP-binding protein Era [Thermaerobacter subterraneus DSM 13965] Length = 345 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 56/198 (28%), Positives = 93/198 (46%), Gaps = 22/198 (11%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A++G PNVGKSTL N+L+ +K+A++ + P TR R+ G G VDT GI + Sbjct: 57 VALIGRPNVGKSTLLNQLIGRKIAIMSDKPQTTRTRILGVLNRPGAQLVFVDTPGIHKPQ 116 Query: 65 NCSIAKQMNDQTELAINEAHLILFLI---DSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 + + + M + E + +L+ D + G P D I L P ++V NK+ Sbjct: 117 HL-LGEHMVQIARRTLQEVEAVCWLVEAPDREPG--PGDRFIAEQLAGLKTPRVLVVNKI 173 Query: 122 D-------TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEM 174 D IA R F E+ + F + +SA H +G +EL + + + P +M Sbjct: 174 DQVAPGEVPAIAAR-FAELGT--FAAVHPVSALHGVGVAELVGTLEGLLPEGPRFFPEDM 230 Query: 175 IENNKRNEESPKENITSE 192 + + P+ I +E Sbjct: 231 VTDQ------PEAQIMAE 242 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 35/127 (27%), Positives = 63/127 (49%), Gaps = 10/127 (7%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKSTL+N+L+G + + TR + N + DT G+ KP Sbjct: 57 VALIGRPNVGKSTLLNQLIGRKIAIMSDKPQTTRTRILGVLNRPGAQLVFVDTPGIHKPQ 116 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ----DLRIVDSVFNTGHAVVLAL 321 + L + V+ + ++++ E L++A +++ D I + + VL + Sbjct: 117 HL---LGEHMVQIARRTLQEVEAVCWLVEAP---DREPGPGDRFIAEQLAGLKTPRVLVV 170 Query: 322 NKWDMVS 328 NK D V+ Sbjct: 171 NKIDQVA 177 >gi|301064536|ref|ZP_07204932.1| tRNA modification GTPase TrmE [delta proteobacterium NaphS2] gi|300441284|gb|EFK05653.1| tRNA modification GTPase TrmE [delta proteobacterium NaphS2] Length = 461 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 57/208 (27%), Positives = 93/208 (44%), Gaps = 25/208 (12%) Query: 208 VVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRI 267 + GR N GKS+L+NRLL + + G TRD + ++N PI I DTAG+RK + Sbjct: 227 IAGRVNSGKSSLLNRLLNETKAIVTDIPGTTRDVIEATFNVGGIPIRIMDTAGIRK---V 283 Query: 268 TESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMV 327 +++E+ + ++Q + + ++D + P + D+ +++ N VV +NK D Sbjct: 284 NDTVEKMGIDLALQKTAEADLLLFVIDRSRPINRDDMDLLEQGENKKALVV--MNKID-- 339 Query: 328 SDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYL 387 L D KA + + IS TGEG+D L K I + L Sbjct: 340 ---LPPAPDFAEKA----DSLSRFSVLEISALTGEGIDHL-----------KEAIKDTIL 381 Query: 388 NSWLQKTQLQNPPPTIFNRYNRLKYITQ 415 + Q + P + +R LK Q Sbjct: 382 SDNAQTSATSRAVPNLRHRQALLKARDQ 409 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 77/161 (47%), Gaps = 19/161 (11%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 I G N GKS+L NRL+ + A+V + PG TRD + + G+ I+DTAGI Sbjct: 227 IAGRVNSGKSSLLNRLLNETKAIVTDIPGTTRDVIEATFNVGGIPIRIMDTAGI------ 280 Query: 67 SIAKQMNDQTE-----LAIN---EAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVS 118 +++ND E LA+ EA L+LF+ID I D + + +N ++V Sbjct: 281 ---RKVNDTVEKMGIDLALQKTAEADLLLFVIDRSRPINRDDMDLLE--QGENKKALVVM 335 Query: 119 NKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVI 159 NK+D A + SL ++EISA G L I Sbjct: 336 NKIDLPPAPDFAEKADSLSRFSVLEISALTGEGIDHLKEAI 376 >gi|291319989|ref|YP_003515247.1| tRNA modification GTPase TrmE [Mycoplasma agalactiae] gi|290752318|emb|CBH40289.1| TRNA modification GTPase (TrmE) [Mycoplasma agalactiae] Length = 445 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 50/178 (28%), Positives = 88/178 (49%), Gaps = 16/178 (8%) Query: 190 TSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWK 249 T E + + I + ++IA++G+PNVGKS+++N +L ++ + +G TRD V W +K Sbjct: 205 TIELSQTSRMIFEGIKIAILGKPNVGKSSILNAILEEDKAIVTDIAGTTRDIVEAMWQYK 264 Query: 250 NHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDS 309 + DTAG+R E +E+ + KS + + + + + D + + D +I + Sbjct: 265 GLLFKFIDTAGIRDTK---EKIEKIGIDKSFEQIEKADVVLHIYDPSQNDNEFDSQIKNK 321 Query: 310 VFNTGHAVVLALNKWDM----------VSDKLNLLQDLRTKAI---KNLPQIGDIYIN 354 + V +NK D+ VS KLN L L+ K + KN+ D Y+N Sbjct: 322 AHSLNKIYVPVINKKDLLETTNDEFLYVSAKLNDLDPLKEKLVSVFKNIDLNNDQYVN 379 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/118 (33%), Positives = 62/118 (52%), Gaps = 1/118 (0%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAI+G PNVGKS++ N ++++ A+V + G TRD + G++F +DTAGI D K Sbjct: 221 IAILGKPNVGKSSILNAILEEDKAIVTDIAGTTRDIVEAMWQYKGLLFKFIDTAGIRDTK 280 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 I K D++ I +A ++L + D +D I + N + V NK D Sbjct: 281 E-KIEKIGIDKSFEQIEKADVVLHIYDPSQNDNEFDSQIKNKAHSLNKIYVPVINKKD 337 >gi|323342097|ref|ZP_08082330.1| GTP-binding protein Era [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464522|gb|EFY09715.1| GTP-binding protein Era [Erysipelothrix rhusiopathiae ATCC 19414] Length = 298 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 48/145 (33%), Positives = 69/145 (47%), Gaps = 4/145 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 I+IVG PN GKSTL N++VK+K+A+V TRD + G +DT GI K Sbjct: 8 ISIVGRPNAGKSTLINQIVKQKIAIVTEKAQTTRDAIIGVKTEEDYQLIFIDTPGIHKPK 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + ++MN L+ ++ID D + L K IP+ ++ NK+D Sbjct: 68 H-QLGERMNRTAYAHFKGVDLVYYIIDGAEPFGTGDEFVIERLSKLKIPVFLIINKVDKM 126 Query: 125 IAQRNFYEIYS---LDFKEIVEISA 146 Q I + F EIV ISA Sbjct: 127 SEQALLERIAASTDFQFAEIVPISA 151 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 63/125 (50%), Gaps = 3/125 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 I++VGRPN GKSTLIN+++ + ++ TRD++ +++ + DT G+ KP Sbjct: 8 ISIVGRPNAGKSTLINQIVKQKIAIVTEKAQTTRDAIIGVKTEEDYQLIFIDTPGIHKPK 67 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L ++ + + + + ++D PF D +++ + V L +NK D Sbjct: 68 H---QLGERMNRTAYAHFKGVDLVYYIIDGAEPFGTGDEFVIERLSKLKIPVFLIINKVD 124 Query: 326 MVSDK 330 +S++ Sbjct: 125 KMSEQ 129 >gi|238650604|ref|YP_002916456.1| tRNA modification GTPase TrmE [Rickettsia peacockii str. Rustic] gi|238624702|gb|ACR47408.1| tRNA modification GTPase TrmE [Rickettsia peacockii str. Rustic] Length = 445 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 37/109 (33%), Positives = 68/109 (62%), Gaps = 6/109 (5%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 L++A++G PNVGKS+L+N L+ + + + +G TRD + + +PI + DTAG+R+ Sbjct: 216 LKLAIIGPPNVGKSSLLNFLMQRDIAIVSNIAGTTRDIIEGHLDIGGYPIILQDTAGIRE 275 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFN 312 S ++ +EQ+ +K+++ S +T + I++ DA EK D I + + N Sbjct: 276 ES--SDIIEQEGIKRAINSAKTADIKIIMFDA----EKLDSSINEDIIN 318 Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 27/56 (48%), Positives = 37/56 (66%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 +AI+G PNVGKS+L N L+++ +A+V N G TRD + G I G + DTAGI Sbjct: 218 LAIIGPPNVGKSSLLNFLMQRDIAIVSNIAGTTRDIIEGHLDIGGYPIILQDTAGI 273 >gi|227513295|ref|ZP_03943344.1| GTP-binding protein Era [Lactobacillus buchneri ATCC 11577] gi|227083496|gb|EEI18808.1| GTP-binding protein Era [Lactobacillus buchneri ATCC 11577] Length = 300 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 53/172 (30%), Positives = 85/172 (49%), Gaps = 11/172 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST NR+V +K+A++ + TR+++ G + +DT GI + Sbjct: 11 VAIVGRPNVGKSTFLNRVVAQKIAIMSDKAQTTRNKIQGVYTTDEAQVVFIDTPGIHKPQ 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N + M D A+ E +LF++++ D+ I L+ + PI ++ NK+D Sbjct: 71 N-KLGDFMMDSALSALKEVDAVLFMVNATERRGAGDNFIIDRLKDVHKPIYLLINKID-E 128 Query: 125 IAQRNFYEIY-----SLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHP 171 I + I +L FKE+ ISA EL + + K + PN P Sbjct: 129 ITPDDVMAIIEQYKNALSFKEVFPISALQGNNVPELLTSLIK----ELPNGP 176 Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 30/123 (24%), Positives = 61/123 (49%), Gaps = 3/123 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VGRPNVGKST +NR++ + ++ TR+ + + + DT G+ KP Sbjct: 11 VAIVGRPNVGKSTFLNRVVAQKIAIMSDKAQTTRNKIQGVYTTDEAQVVFIDTPGIHKPQ 70 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + ++ +++ + + +++AT D I+D + + + L +NK D Sbjct: 71 N---KLGDFMMDSALSALKEVDAVLFMVNATERRGAGDNFIIDRLKDVHKPIYLLINKID 127 Query: 326 MVS 328 ++ Sbjct: 128 EIT 130 >gi|15601925|ref|NP_244997.1| GTP-binding protein Era [Pasteurella multocida subsp. multocida str. Pm70] gi|13959355|sp|Q9CPH8|ERA_PASMU RecName: Full=GTPase Era gi|12720268|gb|AAK02144.1| Era [Pasteurella multocida subsp. multocida str. Pm70] Length = 306 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 51/176 (28%), Positives = 84/176 (47%), Gaps = 6/176 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N+++ +K+++ TR R+ G VDT G+ + Sbjct: 17 IAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIHTDGPYQAVYVDTPGLHIEE 76 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN AI + LI+F++D D + + LR P+++ NK+D Sbjct: 77 KRAINRLMNRAASSAIGDVDLIIFVVDG-THWNEDDEMVLNKLRAAKAPVVLAINKIDNI 135 Query: 125 IAQRNFY----EIYS-LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 + E+ S DF +V ISA+ +EL ++ + + + P E + Sbjct: 136 KNKEEMLPFITELTSKFDFAHVVPISAQGGKNIAELEKIVRESLHEGTHHFPEEYV 191 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 40/131 (30%), Positives = 68/131 (51%), Gaps = 7/131 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS-VSISWNWKNHPIEIFDTAGMR-K 263 IA+VGRPNVGKSTL+N++LG +T ++ TR V I + + + DT G+ + Sbjct: 17 IAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIHTDGPYQAVYV-DTPGLHIE 75 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 R L + ++ V + I ++D T + + D +++ + VVLA+NK Sbjct: 76 EKRAINRLMNRAASSAIGDV---DLIIFVVDGT-HWNEDDEMVLNKLRAAKAPVVLAINK 131 Query: 324 WDMVSDKLNLL 334 D + +K +L Sbjct: 132 IDNIKNKEEML 142 >gi|289167813|ref|YP_003446082.1| GTPase/GTP-binding protein Era [Streptococcus mitis B6] gi|288907380|emb|CBJ22217.1| GTPase/GTP-binding protein Era [Streptococcus mitis B6] Length = 299 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 48/178 (26%), Positives = 86/178 (48%), Gaps = 5/178 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKST N ++ +K+A++ + TR+++ G + +DT GI K Sbjct: 8 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 ++ M + + E +LF++ + D I L+ +P+I+V NK+D Sbjct: 68 -TALGDFMVESAYSTLREVDTVLFMVPADEARGKGDDMIIERLKAAKVPVILVVNKIDKV 126 Query: 125 IAQRNFYEIYS----LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 + +I +DFKEIV ISA S L ++ + + + P + I ++ Sbjct: 127 HPDQLLSQIDDFRNQMDFKEIVPISALQGNNVSRLVDILSENLDEGFQYFPADQITDH 184 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKST +N ++G + ++ TR+ + + I DT G+ KP Sbjct: 8 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +L V+ + ++R +T + ++ A K D I++ + V+L +NK D Sbjct: 68 ---TALGDFMVESAYSTLREVDTVLFMVPADEARGKGDDMIIERLKAAKVPVILVVNKID 124 Query: 326 MV 327 V Sbjct: 125 KV 126 >gi|307708604|ref|ZP_07645068.1| GTP-binding protein Era [Streptococcus mitis NCTC 12261] gi|307615353|gb|EFN94562.1| GTP-binding protein Era [Streptococcus mitis NCTC 12261] Length = 299 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 49/178 (27%), Positives = 86/178 (48%), Gaps = 5/178 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKST N ++ +K+A++ + TR+++ G + +DT GI K Sbjct: 8 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 ++ M + + E +LF++ + D I L+ IP+I+V NK+D Sbjct: 68 -TALGDFMVESAYSTLREVDTVLFMVPADEARGKGDDMIIERLKAAKIPVILVVNKIDKV 126 Query: 125 IAQRNFYEIYS----LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 + +I +DFKEIV ISA S L ++ + + + P + I ++ Sbjct: 127 HPDQLLSQIDDFRNQMDFKEIVPISALQGNNVSRLVDILSENLDEGFQYFPSDQITDH 184 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKST +N ++G + ++ TR+ + + I DT G+ KP Sbjct: 8 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +L V+ + ++R +T + ++ A K D I++ + V+L +NK D Sbjct: 68 ---TALGDFMVESAYSTLREVDTVLFMVPADEARGKGDDMIIERLKAAKIPVILVVNKID 124 Query: 326 MV 327 V Sbjct: 125 KV 126 >gi|149182297|ref|ZP_01860776.1| tRNA modification GTPase [Bacillus sp. SG-1] gi|148849989|gb|EDL64160.1| tRNA modification GTPase [Bacillus sp. SG-1] Length = 461 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 52/171 (30%), Positives = 88/171 (51%), Gaps = 22/171 (12%) Query: 156 HSVIFKIFKQKYPNHPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVG 215 H V+ + K KY +E + R E K I EG S+V +VGRPNVG Sbjct: 193 HGVLLE--KSKYVRDEIEKL---LRTSEQGK--ILREGLSTV----------IVGRPNVG 235 Query: 216 KSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKT 275 KS+L+N L+ N+ + G TRD + N + P+ + DTAG+R+ I E + Sbjct: 236 KSSLLNSLVHENKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDIVERI---G 292 Query: 276 VKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 V++S Q ++ + +++L+ + F +D ++ +V G V++ +NK D+ Sbjct: 293 VERSRQVLKEADLILLVLNYSDEFTYEDEQLFKAV--EGMDVIVIVNKTDL 341 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 48/149 (32%), Positives = 81/149 (54%), Gaps = 12/149 (8%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PNVGKS+L N LV + A+V + PG TRD + + GV +VDTAGI + ++ Sbjct: 228 IVGRPNVGKSSLLNSLVHENKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDI 287 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 + + +++ + EA LIL +++ T D + F + + +I++ NK D + Sbjct: 288 -VERIGVERSRQVLKEADLILLVLNYSDEFTYEDEQL--FKAVEGMDVIVIVNKTD--LP 342 Query: 127 QRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 Q+ +D + E++AEH + T+ L Sbjct: 343 QK-------IDMDRVKELAAEHAVVTTSL 364 >gi|238926591|ref|ZP_04658351.1| tRNA modification GTPase TrmE [Selenomonas flueggei ATCC 43531] gi|238885537|gb|EEQ49175.1| tRNA modification GTPase TrmE [Selenomonas flueggei ATCC 43531] Length = 466 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 35/111 (31%), Positives = 59/111 (53%), Gaps = 3/111 (2%) Query: 193 GKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHP 252 G + + + ++ +VGRPNVGKS+L+N LLG R + G TRD + + P Sbjct: 218 GADTGRILRDGVKTVIVGRPNVGKSSLLNALLGMERAIVTDVPGTTRDIIEEEISVAGIP 277 Query: 253 IEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 + + DTAG+R +++EQ V ++ Q + E + + DA+ P +D Sbjct: 278 LRLLDTAGLRAAE---DAVEQIGVARTEQHLTDAELILAVFDASEPLTAED 325 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 52/180 (28%), Positives = 93/180 (51%), Gaps = 7/180 (3%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PNVGKS+L N L+ + A+V + PG TRD + + + G+ ++DTAG+ ++ Sbjct: 233 IVGRPNVGKSSLLNALLGMERAIVTDVPGTTRDIIEEEISVAGIPLRLLDTAGLRAAED- 291 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD--TR 124 ++ + +TE + +A LIL + D+ +T DHA+ + L III+ +K D + Sbjct: 292 AVEQIGVARTEQHLTDAELILAVFDASEPLTAEDHALLARLSAAAADIIILCSKEDRPSV 351 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 ++ +F + + ++ ISA+ G L I Q+ + + N +R E+ Sbjct: 352 LSAEDFAAVAA----PVLRISAQEGTGLDALREEIAAHIVQREGDLSDGALPNKEREIEA 407 >gi|283797196|ref|ZP_06346349.1| tRNA modification GTPase TrmE [Clostridium sp. M62/1] gi|291075154|gb|EFE12518.1| tRNA modification GTPase TrmE [Clostridium sp. M62/1] gi|295090272|emb|CBK76379.1| tRNA modification GTPase trmE [Clostridium cf. saccharolyticum K10] gi|295115469|emb|CBL36316.1| tRNA modification GTPase trmE [butyrate-producing bacterium SM4/1] Length = 458 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 47/181 (25%), Positives = 91/181 (50%), Gaps = 4/181 (2%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 I+G PN GKS+L N LV ++ A+V + G TRD L ++G+ NI+DTAGI D + Sbjct: 226 ILGKPNAGKSSLMNVLVGEERAIVTDVAGTTRDTLEENIRLHGISLNIIDTAGIRDTDDI 285 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 + K D+ ++A LI++++D + D I +R + +++ ++ + Sbjct: 286 -VEKIGVDKARQIADDADLIIYVVDGSRPLDENDREIMELIRGRKAIVLLNKTDLEMLVT 344 Query: 127 QRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEESPK 186 ++ E + ++ +SA+ G L I ++F + E++ N R++ + + Sbjct: 345 EKELEERTG---QTVIPVSAKEQKGIDVLEERIRELFFSGKIDFNDEVMITNVRHKTALR 401 Query: 187 E 187 E Sbjct: 402 E 402 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 36/127 (28%), Positives = 67/127 (52%), Gaps = 5/127 (3%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + ++ ++G+PN GKS+L+N L+G R + +G TRD++ + + I DTA Sbjct: 218 VREGVKTVILGKPNAGKSSLMNVLVGEERAIVTDVAGTTRDTLEENIRLHGISLNIIDTA 277 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R I E + V K+ Q + I ++D + P ++ D I++ + G ++ Sbjct: 278 GIRDTDDIVEKI---GVDKARQIADDADLIIYVVDGSRPLDENDREIMELI--RGRKAIV 332 Query: 320 ALNKWDM 326 LNK D+ Sbjct: 333 LLNKTDL 339 >gi|293364063|ref|ZP_06610799.1| tRNA modification GTPase TrmE [Mycoplasma alligatoris A21JP2] gi|292552553|gb|EFF41327.1| tRNA modification GTPase TrmE [Mycoplasma alligatoris A21JP2] Length = 453 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 37/128 (28%), Positives = 71/128 (55%), Gaps = 3/128 (2%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 I + +++A++G+PNVGKS+L+N L+ N+ + +G TRD + S+ + DTA Sbjct: 221 IFEGIKVAILGKPNVGKSSLLNALVSENKAIVTDIAGTTRDLIETSYQLDGILFTLVDTA 280 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+RK E +EQ +KKS++ ++ + + ++D ++ DL+I + Sbjct: 281 GLRKSD---ELIEQIGIKKSLEQIKKADLILHVIDPLNNEDEFDLKIEQESKKENKTYIK 337 Query: 320 ALNKWDMV 327 +NK D++ Sbjct: 338 IINKKDLI 345 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 45/125 (36%), Positives = 71/125 (56%), Gaps = 3/125 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKS+L N LV + A+V + G TRD + ++G++F +VDTAG+ K Sbjct: 227 VAILGKPNVGKSSLLNALVSENKAIVTDIAGTTRDLIETSYQLDGILFTLVDTAGLR--K 284 Query: 65 NCSIAKQMNDQTELA-INEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + + +Q+ + L I +A LIL +ID +D I +K+N I + NK D Sbjct: 285 SDELIEQIGIKKSLEQIKKADLILHVIDPLNNEDEFDLKIEQESKKENKTYIKIINKKDL 344 Query: 124 RIAQR 128 I ++ Sbjct: 345 IIGEK 349 >gi|332187780|ref|ZP_08389514.1| GTP-binding protein Era [Sphingomonas sp. S17] gi|332012130|gb|EGI54201.1| GTP-binding protein Era [Sphingomonas sp. S17] Length = 298 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 53/177 (29%), Positives = 83/177 (46%), Gaps = 5/177 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VGAPN GKSTL N LV +K+A+V TR +L G AI +VDT GI + K Sbjct: 9 VAVVGAPNAGKSTLVNALVGQKVAIVSPKAQTTRAKLLGVAIEGEAQILLVDTPGIFEPK 68 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + M A ++ ++D K GI P AI + + P ++ NK+D Sbjct: 69 R-RLDRAMVAAAWEGAEGADILALVVDGKGGIGPKVTAIAESIAHRPEPKHLILNKVDIA 127 Query: 125 IAQRNFYEIYSLD----FKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 R L+ F E +SA+ G EL + + + Q ++P + + + Sbjct: 128 DKARLLGHAEKLNQVVPFDETWFVSAQTGDGLPELKTRLAGLMPQGPWHYPEDQVSD 184 Score = 43.1 bits (100), Expect = 0.091, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 78/165 (47%), Gaps = 14/165 (8%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD---SVSISWNWKNHPIEIFDTAGMR 262 +AVVG PN GKSTL+N L+G + ++ TR V+I + I + DT G+ Sbjct: 9 VAVVGAPNAGKSTLVNALVGQKVAIVSPKAQTTRAKLLGVAIEGEAQ---ILLVDTPGIF 65 Query: 263 KPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALN 322 +P R L++ V + + + +++D + I +S+ + L LN Sbjct: 66 EPKR---RLDRAMVAAAWEGAEGADILALVVDGKGGIGPKVTAIAESIAHRPEPKHLILN 122 Query: 323 KWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDL 367 K D ++DK LL + + + + + +S +TG+GL +L Sbjct: 123 KVD-IADKARLLG--HAEKLNQVVPFDETWF--VSAQTGDGLPEL 162 >gi|261868616|ref|YP_003256538.1| GTP-binding protein Era [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413948|gb|ACX83319.1| GTP-binding protein Era [Aggregatibacter actinomycetemcomitans D11S-1] Length = 302 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 51/176 (28%), Positives = 87/176 (49%), Gaps = 6/176 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N+++ +K+++ TR R+ G VDT G+ + Sbjct: 13 IAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIKTEGAYQEIYVDTPGLHIEE 72 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN AI++ L++F++D D + + LRK P+++ NK+D Sbjct: 73 KRAINRLMNRAASSAISDVELVIFVVDG-THWNDDDEMVLNKLRKTKAPVVLAINKIDNI 131 Query: 125 IAQRNFY----EIYS-LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 + + EI S +F ++V ISAE + L ++ K + + P + + Sbjct: 132 KNKDDLLPFITEISSKFNFADVVPISAEKGNNINVLEQIVRKSLRPGIHHFPEDYV 187 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 43/131 (32%), Positives = 70/131 (53%), Gaps = 7/131 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIF-DTAGMR-K 263 IA+VGRPNVGKSTL+N++LG +T ++ TR + + + EI+ DT G+ + Sbjct: 13 IAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRI-VGIKTEGAYQEIYVDTPGLHIE 71 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 R L + ++ V E I ++D T + D +++ + T VVLA+NK Sbjct: 72 EKRAINRLMNRAASSAISDV---ELVIFVVDGT-HWNDDDEMVLNKLRKTKAPVVLAINK 127 Query: 324 WDMVSDKLNLL 334 D + +K +LL Sbjct: 128 IDNIKNKDDLL 138 >gi|229496106|ref|ZP_04389828.1| tRNA modification GTPase TrmE [Porphyromonas endodontalis ATCC 35406] gi|229317002|gb|EEN82913.1| tRNA modification GTPase TrmE [Porphyromonas endodontalis ATCC 35406] Length = 468 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 36/98 (36%), Positives = 57/98 (58%), Gaps = 3/98 (3%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K++ + + IA++G+PN GKSTL+N LLG +R + G TRDS+ K I D Sbjct: 216 KHLKEGIPIAILGQPNTGKSTLLNALLGEDRAIVSDIEGTTRDSIEEKLVIKGVLFRIID 275 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDA 295 TAG+R + +EQ +K+++Q +++LLDA Sbjct: 276 TAGLRHTQ---DPIEQLGIKRALQKAEDAALSLILLDA 310 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 28/56 (50%), Positives = 39/56 (69%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 IAI+G PN GKSTL N L+ + A+V + G TRD + + +I GV+F I+DTAG+ Sbjct: 224 IAILGQPNTGKSTLLNALLGEDRAIVSDIEGTTRDSIEEKLVIKGVLFRIIDTAGL 279 >gi|149912889|ref|ZP_01901423.1| tRNA modification GTPase TrmE, putative [Roseobacter sp. AzwK-3b] gi|149813295|gb|EDM73121.1| tRNA modification GTPase TrmE, putative [Roseobacter sp. AzwK-3b] Length = 428 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 57/203 (28%), Positives = 90/203 (44%), Gaps = 38/203 (18%) Query: 193 GKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHP 252 G ++ + I +A+VG PNVGKSTL+N L G + +T +G TRD + + + P Sbjct: 203 GVTTAERIRSGFEVAIVGAPNVGKSTLLNALAGRDAAITSEVAGTTRDVIEVRMDLGGLP 262 Query: 253 IEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFN 312 + + DTAG+R+ I ES+ V++++ + DLR+ + Sbjct: 263 VTLLDTAGIRETDDIVESI---GVERALARAQAA----------------DLRVF--LVT 301 Query: 313 TGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVL 372 G L D+V LN DL D N ISG+TG G+ DL+ Sbjct: 302 GGDTPDLNPEPDDIV---LNAKADLS-----------DNPANGISGKTGLGVSDLIA--- 344 Query: 373 EINKLWKTRITTSYLNSWLQKTQ 395 I + R + + L + L+ Q Sbjct: 345 RITAILSKRASGAGLATRLRHKQ 367 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/97 (37%), Positives = 53/97 (54%), Gaps = 5/97 (5%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + +AIVGAPNVGKSTL N L + A+ G TRD + + + G+ ++DTAGI + Sbjct: 214 FEVAIVGAPNVGKSTLLNALAGRDAAITSEVAGTTRDVIEVRMDLGGLPVTLLDTAGIRE 273 Query: 63 GKNCSIAKQMNDQTELA-INEAHLILFLIDSKAGITP 98 + I + + + LA A L +FL+ G TP Sbjct: 274 TDD--IVESIGVERALARAQAADLRVFLV--TGGDTP 306 >gi|114778886|ref|ZP_01453683.1| tRNA modification GTPase [Mariprofundus ferrooxydans PV-1] gi|114550855|gb|EAU53421.1| tRNA modification GTPase [Mariprofundus ferrooxydans PV-1] Length = 393 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 57/212 (26%), Positives = 98/212 (46%), Gaps = 46/212 (21%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VG PNVGKS+L+N L G R + G TRD + + + P+ + DTAG+R Sbjct: 175 VALVGAPNVGKSSLLNALSGRERAIVSHLEGTTRDLLDVDFEVNGIPLRLTDTAGLRDSH 234 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + E + V++++Q T + T+ + DA+ P D+ + HA +L +NK D Sbjct: 235 DVVEI---EGVRRALQVASTADVTLFVADASRP---------DTWSPSIHADLLLMNKVD 282 Query: 326 MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTS 385 + S ++P D YI +S +GEGL++L S Sbjct: 283 LES--------------GDIP---DEYIQ-LSVISGEGLNEL----------------RS 308 Query: 386 YLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQ 417 L S+L Q+ + + + +RL + ++ Sbjct: 309 RLASFLGDIQMGDEGMMVTHERHRLVLVEALE 340 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 33/89 (37%), Positives = 53/89 (59%), Gaps = 1/89 (1%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+A+VGAPNVGKS+L N L ++ A+V + G TRD L +NG+ + DTAG+ D Sbjct: 174 TVALVGAPNVGKSSLLNALSGRERAIVSHLEGTTRDLLDVDFEVNGIPLRLTDTAGLRDS 233 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDS 92 + + + ++A + A + LF+ D+ Sbjct: 234 HDVVEIEGVRRALQVA-STADVTLFVADA 261 >gi|92113756|ref|YP_573684.1| GTP-binding protein Era [Chromohalobacter salexigens DSM 3043] gi|91796846|gb|ABE58985.1| GTP-binding protein Era [Chromohalobacter salexigens DSM 3043] Length = 299 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 50/181 (27%), Positives = 85/181 (46%), Gaps = 9/181 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI---A 61 +AIVG PNVGKSTL NR++ +K+++ P TR ++ G F VDT G+ Sbjct: 8 VAIVGRPNVGKSTLMNRILGQKISITSRRPQTTRHQVMGIKTEGETQFIYVDTPGMHIQT 67 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 +N +I + MN A+ + ++F++D + T D + L + P+I+ NK+ Sbjct: 68 RDRNKAINRFMNQAATHALRDIDCVIFIVD-RTKWTAEDDVVLEKLGQVPAPVILAVNKV 126 Query: 122 DTRIAQRNFYEIYS-----LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIE 176 D + + +F +V ISA+H EL + I + + P + I Sbjct: 127 DWLEDKSSLLPWLDSISRKREFAAVVPISAKHGTNVPELEAEIAQRLPESVHYFPEDQIT 186 Query: 177 N 177 + Sbjct: 187 D 187 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/131 (32%), Positives = 72/131 (54%), Gaps = 4/131 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV-SISWNWKNHPIEIFDTAGMRKP 264 +A+VGRPNVGKSTL+NR+LG +T + TR V I + I + DT GM Sbjct: 8 VAIVGRPNVGKSTLMNRILGQKISITSRRPQTTRHQVMGIKTEGETQFIYV-DTPGMHIQ 66 Query: 265 SRI-TESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 +R +++ + + + ++R + I ++D T + +D +++ + V+LA+NK Sbjct: 67 TRDRNKAINRFMNQAATHALRDIDCVIFIVDRT-KWTAEDDVVLEKLGQVPAPVILAVNK 125 Query: 324 WDMVSDKLNLL 334 D + DK +LL Sbjct: 126 VDWLEDKSSLL 136 >gi|313887681|ref|ZP_07821363.1| tRNA modification GTPase TrmE [Peptoniphilus harei ACS-146-V-Sch2b] gi|312846290|gb|EFR33669.1| tRNA modification GTPase TrmE [Peptoniphilus harei ACS-146-V-Sch2b] Length = 459 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 62/247 (25%), Positives = 121/247 (48%), Gaps = 31/247 (12%) Query: 167 YPNHPLEMIENNKRNEESPK-----ENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLIN 221 +P+ +E + E S K +N+ K+S + + + ++G+PNVGKS+L+N Sbjct: 182 FPDEDIEDAAYHDLMERSDKILEKMDNLLDNSKNS-RLLRDGINTVILGKPNVGKSSLLN 240 Query: 222 RLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQ 281 LL Y+R + +G TRD + N ++I DTAG+R+ + +E+ V + + Sbjct: 241 GLLKYDRAIVTDIAGTTRDIIEDYINLDGVLLKITDTAGIRETD---DEVEKIGVNIARE 297 Query: 282 SVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM---VSD--------- 329 ++ + I + D + F+K D I++ + + H + LNK D+ +SD Sbjct: 298 KLKEADLVIAIFDISRDFDKDDEEILNLIKDKKHITI--LNKDDLDQKISDEEIEKYFKD 355 Query: 330 ---KLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSY 386 +L+++++ K I+NL I D++ + G D ++ ++ IN L + + Sbjct: 356 DYLRLSVMENESVKKIENL--IIDLFFD---GELQISSDSILSNIRHINALKEAKKALLE 410 Query: 387 LNSWLQK 393 +N L+K Sbjct: 411 VNESLKK 417 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/140 (28%), Positives = 69/140 (49%), Gaps = 17/140 (12%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 I+G PNVGKS+L N L+K A+V + G TRD + ++GV+ I DTAGI Sbjct: 227 ILGKPNVGKSSLLNGLLKYDRAIVTDIAGTTRDIIEDYINLDGVLLKITDTAGI------ 280 Query: 67 SIAKQMNDQTE-LAIN-------EAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVS 118 ++ +D+ E + +N EA L++ + D D I + ++ K I+ Sbjct: 281 ---RETDDEVEKIGVNIAREKLKEADLVIAIFDISRDFDKDDEEILNLIKDKKHITILNK 337 Query: 119 NKMDTRIAQRNFYEIYSLDF 138 + +D +I+ + + D+ Sbjct: 338 DDLDQKISDEEIEKYFKDDY 357 >gi|306821539|ref|ZP_07455139.1| GTP-binding protein Era [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550433|gb|EFM38424.1| GTP-binding protein Era [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 316 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 50/151 (33%), Positives = 82/151 (54%), Gaps = 15/151 (9%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIING----VIFNIVDTAGI 60 ++IVG NVGKSTL N ++ +K+A+ + P TR R+ G I N +IF +DT G+ Sbjct: 26 VSIVGRSNVGKSTLLNAIIGEKIAITSDKPQTTRSRIKG--IYNDEESQIIF--LDTPGV 81 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 KN + M + L+ + A +I++++D I DH I L+K P I+V NK Sbjct: 82 QKPKN-KLGSYMAKEVSLSSSTADVIVYVVDESEKIGRLDHNIIENLKKTKQPKILVLNK 140 Query: 121 MDTRIAQRNFYEIYSLD-----FKEIVEISA 146 +D ++++ ++I + F +IV I A Sbjct: 141 ID-KLSEDKIFDIIKMYDEIGIFDDIVPICA 170 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 38/124 (30%), Positives = 65/124 (52%), Gaps = 3/124 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +++VGR NVGKSTL+N ++G +T + TR + +N + I DT G++KP Sbjct: 26 VSIVGRSNVGKSTLLNAIIGEKIAITSDKPQTTRSRIKGIYNDEESQIIFLDTPGVQKPK 85 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 S K V S+ S T + + ++D + + D I++++ T +L LNK D Sbjct: 86 NKLGSYMAKEV--SLSS-STADVIVYVVDESEKIGRLDHNIIENLKKTKQPKILVLNKID 142 Query: 326 MVSD 329 +S+ Sbjct: 143 KLSE 146 >gi|296158233|ref|ZP_06841065.1| GTP-binding protein Era [Burkholderia sp. Ch1-1] gi|295891569|gb|EFG71355.1| GTP-binding protein Era [Burkholderia sp. Ch1-1] Length = 287 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 44/150 (29%), Positives = 79/150 (52%), Gaps = 9/150 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N LV +K+++ TR R+ G + + VDT G Sbjct: 2 VAIVGRPNVGKSTLMNALVGQKVSITSRKAQTTRHRITGIHTLEDAQYIFVDTPGFQTKH 61 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + ++ + +N + ILF+I++ P D + + ++P ++++NK+D R Sbjct: 62 SGALNRSLNRAVTSTLTSVDAILFVIEA-GRFGPDDQKVLDLI-PPSVPTLLIANKLD-R 118 Query: 125 IAQRN-----FYEIYSLD-FKEIVEISAEH 148 ++ ++ ++ +L F EIV +SA+H Sbjct: 119 VSDKDSLFPFMQQVSALHKFAEIVPLSAKH 148 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 37/129 (28%), Positives = 70/129 (54%), Gaps = 4/129 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VGRPNVGKSTL+N L+G +T ++ TR ++ ++ DT G + + Sbjct: 2 VAIVGRPNVGKSTLMNALVGQKVSITSRKAQTTRHRITGIHTLEDAQYIFVDTPGFQ--T 59 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + + +L +++ +++ S T I+ + F D +++D + + +++A NK D Sbjct: 60 KHSGAL-NRSLNRAVTSTLTSVDAILFVIEAGRFGPDDQKVLDLIPPSVPTLLIA-NKLD 117 Query: 326 MVSDKLNLL 334 VSDK +L Sbjct: 118 RVSDKDSLF 126 >gi|261418494|ref|YP_003252176.1| GTP-binding protein Era [Geobacillus sp. Y412MC61] gi|297529346|ref|YP_003670621.1| GTP-binding protein Era [Geobacillus sp. C56-T3] gi|319767545|ref|YP_004133046.1| GTP-binding protein Era [Geobacillus sp. Y412MC52] gi|261374951|gb|ACX77694.1| GTP-binding protein Era [Geobacillus sp. Y412MC61] gi|297252598|gb|ADI26044.1| GTP-binding protein Era [Geobacillus sp. C56-T3] gi|317112411|gb|ADU94903.1| GTP-binding protein Era [Geobacillus sp. Y412MC52] Length = 302 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 45/148 (30%), Positives = 78/148 (52%), Gaps = 9/148 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKST NR++ +K+A++ + P TR+++ G + +DT G+ K Sbjct: 11 VAIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKIQGVYTDDDAQIIFIDTPGVHKPK 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + M A+ E LILF+++++ G + I L++ + P+ +V NK+D Sbjct: 71 H-KLGDFMMKVALNALREVDLILFMVNAEEGFGRGEAFIIERLKEVDTPVFLVINKIDRV 129 Query: 125 IAQR------NFYEIYSLDFKEIVEISA 146 + ++Y F EIV ISA Sbjct: 130 HPDELLPLIDRYKDLYP--FAEIVPISA 155 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 81/169 (47%), Gaps = 10/169 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKST +NR++G + + TR+ + + + I DT G+ KP Sbjct: 11 VAIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKIQGVYTDDDAQIIFIDTPGVHKPK 70 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L +K ++ ++R + + +++A F + + I++ + V L +NK D Sbjct: 71 ---HKLGDFMMKVALNALREVDLILFMVNAEEGFGRGEAFIIERLKEVDTPVFLVINKID 127 Query: 326 MVS-DKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 V D+L L D R K + + I IS G +D L+ + E Sbjct: 128 RVHPDELLPLID-RYKDLYPFAE-----IVPISALEGNNVDRLLEQIKE 170 >gi|193213385|ref|YP_001999338.1| GTP-binding protein Era [Chlorobaculum parvum NCIB 8327] gi|193086862|gb|ACF12138.1| GTP-binding protein Era [Chlorobaculum parvum NCIB 8327] Length = 305 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 43/120 (35%), Positives = 65/120 (54%), Gaps = 6/120 (5%) Query: 8 VGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNCS 67 VGAPN GKSTL NRL+ K+++V P TR ++ G + I+DT GI D K S Sbjct: 14 VGAPNAGKSTLLNRLLDHKLSIVTPKPQTTRKKITGIYHDDRSQIIILDTPGIMDPKQ-S 72 Query: 68 IAKQMNDQTELAINEAHLILFLIDSKAGITPYDHA-----ITSFLRKKNIPIIIVSNKMD 122 + + M + T ++ + +I+ LI + G P+D A I ++R + P +I NK D Sbjct: 73 LHESMLEITRRSLRDTDVIVALIPLQKGEEPFDRAFADELIEQWVRPADKPFVIALNKAD 132 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 63/127 (49%), Gaps = 8/127 (6%) Query: 209 VGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRIT 268 VG PN GKSTL+NRLL + + + TR ++ ++ I I DT G+ P Sbjct: 14 VGAPNAGKSTLLNRLLDHKLSIVTPKPQTTRKKITGIYHDDRSQIIILDTPGIMDPK--- 70 Query: 269 ESLEQKTVKKSMQSVRTCETTIVLL---DATIPFEK--QDLRIVDSVFNTGHAVVLALNK 323 +SL + ++ + +S+R + + L+ PF++ D I V V+ALNK Sbjct: 71 QSLHESMLEITRRSLRDTDVIVALIPLQKGEEPFDRAFADELIEQWVRPADKPFVIALNK 130 Query: 324 WDMVSDK 330 D+V ++ Sbjct: 131 ADLVPEE 137 >gi|160944275|ref|ZP_02091504.1| hypothetical protein FAEPRAM212_01784 [Faecalibacterium prausnitzii M21/2] gi|158444457|gb|EDP21461.1| hypothetical protein FAEPRAM212_01784 [Faecalibacterium prausnitzii M21/2] Length = 456 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 65/120 (54%), Gaps = 5/120 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 A+VGRPN GKSTL+N L G++R + +G TRD V + + + +FDTAG+R+ Sbjct: 224 CAIVGRPNAGKSTLLNLLAGFDRAIVTPVAGTTRDVVEQAVQLGDIRLNLFDTAGLRE-- 281 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +++E + +++S + + + + D + P ++DL + G + +NK D Sbjct: 282 -TEDAIEAEGIRRSWKKLEEAGLILAVFDGSEPPSREDLALAQRC--AGRPAIALVNKED 338 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 57/118 (48%), Gaps = 3/118 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 AIVG PN GKSTL N L A+V G TRD + + + N+ DTAG+ + + Sbjct: 224 CAIVGRPNAGKSTLLNLLAGFDRAIVTPVAGTTRDVVEQAVQLGDIRLNLFDTAGLRETE 283 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + +I + ++ + EA LIL + D + D A+ R P I + NK D Sbjct: 284 D-AIEAEGIRRSWKKLEEAGLILAVFDGSEPPSREDLALAQ--RCAGRPAIALVNKED 338 >gi|16800567|ref|NP_470835.1| GTP-binding protein Era [Listeria innocua Clip11262] gi|21263591|sp|Q92BP8|ERA_LISIN RecName: Full=GTPase Era gi|16413972|emb|CAC96730.1| lin1499 [Listeria innocua Clip11262] gi|313618893|gb|EFR90758.1| GTP-binding protein Era [Listeria innocua FSL S4-378] gi|313623743|gb|EFR93885.1| GTP-binding protein Era [Listeria innocua FSL J1-023] Length = 301 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 48/150 (32%), Positives = 80/150 (53%), Gaps = 13/150 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N ++ +K+A++ + TR+++ G + +DT GI K Sbjct: 10 VAIVGRPNVGKSTLLNHIIGQKIAIMSDKAQTTRNKVQGVFTTDESQIIFIDTPGIHKPK 69 Query: 65 NCSIAKQMNDQTELAIN---EAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 + K + ++A+N E LI F+ID+ G D I L+ P+ ++ NK+ Sbjct: 70 H----KLGDFMVKIALNTFQEVDLIYFVIDASTGFGRGDEFIIEKLKNVQTPVFLLINKI 125 Query: 122 DTRIAQRNFYEIYS-----LDFKEIVEISA 146 D I+ + ++ +DF+EI+ ISA Sbjct: 126 DL-ISPEDLIKLIEQYRELMDFEEIIPISA 154 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 43/144 (29%), Positives = 75/144 (52%), Gaps = 8/144 (5%) Query: 200 ISKPLR---IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIF 256 +S+P + +A+VGRPNVGKSTL+N ++G + ++ TR+ V + I Sbjct: 1 MSEPFKSGFVAIVGRPNVGKSTLLNHIIGQKIAIMSDKAQTTRNKVQGVFTTDESQIIFI 60 Query: 257 DTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHA 316 DT G+ KP L VK ++ + + + ++DA+ F + D I++ + N Sbjct: 61 DTPGIHKPKH---KLGDFMVKIALNTFQEVDLIYFVIDASTGFGRGDEFIIEKLKNVQTP 117 Query: 317 VVLALNKWDMVS--DKLNLLQDLR 338 V L +NK D++S D + L++ R Sbjct: 118 VFLLINKIDLISPEDLIKLIEQYR 141 >gi|312868217|ref|ZP_07728417.1| ribosome biogenesis GTPase Era [Streptococcus parasanguinis F0405] gi|322389989|ref|ZP_08063528.1| GTP-binding protein Era [Streptococcus parasanguinis ATCC 903] gi|311095962|gb|EFQ54206.1| ribosome biogenesis GTPase Era [Streptococcus parasanguinis F0405] gi|321143302|gb|EFX38741.1| GTP-binding protein Era [Streptococcus parasanguinis ATCC 903] Length = 299 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 48/178 (26%), Positives = 87/178 (48%), Gaps = 5/178 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKST N ++ +K+A++ + TR+++ G + +DT GI K Sbjct: 8 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 ++ M + + E +LF++ + D I L+ +P+I+V NK+D Sbjct: 68 -TALGDFMVESAYSTLREVDTVLFMVPADEPRGKGDDMIIERLKAAKVPVILVVNKIDKV 126 Query: 125 IAQRNFYEI----YSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 + +I +DFKEIV ISA S L ++ + ++ + P + I ++ Sbjct: 127 HPDQLLAQIDDFRSQMDFKEIVPISALQGNNVSRLIDILSENLEEGFQYFPADQITDH 184 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/137 (28%), Positives = 68/137 (49%), Gaps = 5/137 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKST +N ++G + ++ TR+ + + I DT G+ KP Sbjct: 8 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +L V+ + ++R +T + ++ A P K D I++ + V+L +NK D Sbjct: 68 T---ALGDFMVESAYSTLREVDTVLFMVPADEPRGKGDDMIIERLKAAKVPVILVVNKID 124 Query: 326 MVSDKLNLLQ--DLRTK 340 V L Q D R++ Sbjct: 125 KVHPDQLLAQIDDFRSQ 141 >gi|168187762|ref|ZP_02622397.1| GTP-binding protein Era [Clostridium botulinum C str. Eklund] gi|169294368|gb|EDS76501.1| GTP-binding protein Era [Clostridium botulinum C str. Eklund] Length = 294 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 49/175 (28%), Positives = 87/175 (49%), Gaps = 5/175 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 I+I+G PNVGKSTL N ++ +K+++V P TR+ + + +DT GI + Sbjct: 7 ISIIGRPNVGKSTLTNDILGEKLSIVSCRPQTTRNNIRAVLTRDDYQLVFLDTPGIHKPR 66 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + + M E + +E LI+F+ + I+ D I ++ + P+ +V NK+D Sbjct: 67 H-KLGEYMVKAAETSTDEVDLIVFITTPEGEISKGDELILENIKNRKKPVFLVINKIDEN 125 Query: 125 IAQ--RNFYEIYS--LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 + + YS +DF EI+ ISA L +++ K + +P +MI Sbjct: 126 PQELVAETLQKYSEYMDFAEIIPISARKSKNVDTLLNLMIKYMPEGPKYYPEDMI 180 Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 74/164 (45%), Gaps = 10/164 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 I+++GRPNVGKSTL N +LG + + TR+++ ++ + DT G+ KP Sbjct: 7 ISIIGRPNVGKSTLTNDILGEKLSIVSCRPQTTRNNIRAVLTRDDYQLVFLDTPGIHKPR 66 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + VK + S + + + K D I++++ N V L +NK D Sbjct: 67 H---KLGEYMVKAAETSTDEVDLIVFITTPEGEISKGDELILENIKNRKKPVFLVINKID 123 Query: 326 MVSDKLNLLQDLRTKAIKNLPQIGDIY-INTISGRTGEGLDDLM 368 Q+L + ++ + D I IS R + +D L+ Sbjct: 124 ENP------QELVAETLQKYSEYMDFAEIIPISARKSKNVDTLL 161 >gi|78357435|ref|YP_388884.1| tRNA modification GTPase TrmE [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|123552067|sp|Q30YQ7|MNME_DESDG RecName: Full=tRNA modification GTPase mnmE gi|78219840|gb|ABB39189.1| tRNA modification GTPase trmE [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 468 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 43/162 (26%), Positives = 83/162 (51%), Gaps = 3/162 (1%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + + G N GKS+L N L+ +K A+V + PG TRD L ++G+ +VDTAG+ + Sbjct: 229 VVLAGQVNAGKSSLLNALLGRKRAIVTDVPGTTRDFLEESITLDGLAVRLVDTAGLRETG 288 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + + +LA +A L+L ++DS+ G P++ + + + + +++V NK D Sbjct: 289 DIVEQEGVRMSRDLAA-QADLVLLVVDSRLGTGPHEQELMAAMEAGS--VLVVLNKTDAA 345 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQK 166 + SL + V +SA G L + + ++ ++ Sbjct: 346 TEDELDRCVRSLAGRPHVAVSAREGKGMDSLAAAVREMVLRR 387 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 47/174 (27%), Positives = 88/174 (50%), Gaps = 22/174 (12%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP 264 ++ + G+ N GKS+L+N LLG R + G TRD + S + + DTAG+R+ Sbjct: 228 QVVLAGQVNAGKSSLLNALLGRKRAIVTDVPGTTRDFLEESITLDGLAVRLVDTAGLRET 287 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDA---TIPFEKQDLRIVDSVFNTGHAVVLAL 321 I +EQ+ V+ S + ++++D+ T P E++ + +++ +V++ L Sbjct: 288 GDI---VEQEGVRMSRDLAAQADLVLLVVDSRLGTGPHEQELMAAMEA-----GSVLVVL 339 Query: 322 NKWDMVS-DKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEI 374 NK D + D+L D +++ P + +S R G+G+D L +V E+ Sbjct: 340 NKTDAATEDEL----DRCVRSLAGRPHV------AVSAREGKGMDSLAAAVREM 383 >gi|161526321|ref|YP_001581333.1| tRNA modification GTPase TrmE [Burkholderia multivorans ATCC 17616] gi|189348964|ref|YP_001944592.1| tRNA modification GTPase TrmE [Burkholderia multivorans ATCC 17616] gi|160343750|gb|ABX16836.1| tRNA modification GTPase TrmE [Burkholderia multivorans ATCC 17616] gi|189332986|dbj|BAG42056.1| tRNA modification GTPase [Burkholderia multivorans ATCC 17616] Length = 464 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 49/164 (29%), Positives = 85/164 (51%), Gaps = 12/164 (7%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 ++ + G PNVGKS+L N L ++A+V G TRD++ + G+ +I+DTAG+ + Sbjct: 228 SVVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRET 287 Query: 64 KN----CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 ++ IA+ ++ I A ++L L+DS+ G+T D AI + +P++ V N Sbjct: 288 EDEVERIGIARTWSE-----IERADVVLHLLDSRTGMTADDDAIAARF-PAGVPVVRVLN 341 Query: 120 KMD-TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKI 162 K D T + + D E V +SA+ G L + + +I Sbjct: 342 KTDLTGVPASVAHPAAEGDLTE-VHLSAKRGDGIDLLRAELLRI 384 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 50/188 (26%), Positives = 87/188 (46%), Gaps = 14/188 (7%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + L + + G+PNVGKS+L+N L G + +G TRD V+ + + P+ I DTA Sbjct: 223 LREGLSVVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTA 282 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R+ + +E+ + ++ + + + LLD+ D I + F G VV Sbjct: 283 GLRETE---DEVERIGIARTWSEIERADVVLHLLDSRTGMTADDDAIA-ARFPAGVPVVR 338 Query: 320 ALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWK 379 LNK D+ ++ + GD+ +S + G+G+D L +L I W+ Sbjct: 339 VLNKTDLTG---------VPASVAHPAAEGDLTEVHLSAKRGDGIDLLRAELLRIAG-WQ 388 Query: 380 TRITTSYL 387 YL Sbjct: 389 AGAEGVYL 396 >gi|332367331|gb|EGJ45066.1| GTP-binding protein Era [Streptococcus sanguinis SK1059] Length = 299 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 49/179 (27%), Positives = 89/179 (49%), Gaps = 7/179 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKST N ++ +K+A++ + TR+++ G + +DT GI K Sbjct: 8 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM--- 121 ++ M + + E +LF++ + D I L+ +P+I+V NK+ Sbjct: 68 -TALGDFMVEAAYSTLREVDTVLFMVPADETRGKGDDMIIERLKAAKVPVILVVNKIDKV 126 Query: 122 --DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 D +AQ + + +DFKEIV ISA S L ++ + ++ + P + I ++ Sbjct: 127 HPDQLLAQIDDFR-QQMDFKEIVPISALQGNNVSRLVDILSENLEEGFQYFPEDQITDH 184 Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKST +N ++G + ++ TR+ + + I DT G+ KP Sbjct: 8 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +L V+ + ++R +T + ++ A K D I++ + V+L +NK D Sbjct: 68 ---TALGDFMVEAAYSTLREVDTVLFMVPADETRGKGDDMIIERLKAAKVPVILVVNKID 124 Query: 326 MV 327 V Sbjct: 125 KV 126 >gi|325567648|ref|ZP_08144315.1| tRNA modification GTPase TrmE [Enterococcus casseliflavus ATCC 12755] gi|325159081|gb|EGC71227.1| tRNA modification GTPase TrmE [Enterococcus casseliflavus ATCC 12755] Length = 481 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 51/178 (28%), Positives = 94/178 (52%), Gaps = 16/178 (8%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L A++GRPNVGKS+L+N LL + + +G TRD + N + P+++ D Sbjct: 238 KILREGLSTAIIGRPNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLID 297 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ + E + V++S +++ E +++L+ + ++D ++++ G Sbjct: 298 TAGIRETEDVVEKI---GVERSRKALAEAELILLVLNQSEGLTQEDKQLLE--LTAGSRR 352 Query: 318 VLALNKWDMVSDKLNLLQDLRTKAIKNLPQ-IGDIYINTISGRTGEGLDDLMVSVLEI 374 ++ LNK D+ KL A L Q D I ++S T EGLD L ++ ++ Sbjct: 353 IILLNKTDL-EPKL---------APAELAQYAADEPIFSVSVLTNEGLDQLEQAIADL 400 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 45/158 (28%), Positives = 83/158 (52%), Gaps = 3/158 (1%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L++++ A+V + G TRD + + GV ++DTAGI + ++ Sbjct: 247 AIIGRPNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETED 306 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 + K +++ A+ EA LIL +++ G+T D + I++ ++ ++ Sbjct: 307 V-VEKIGVERSRKALAEAELILLVLNQSEGLTQEDKQLLELTAGSRRIILLNKTDLEPKL 365 Query: 126 AQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 A + Y+ D + I +S + G +L I +F Sbjct: 366 APAELAQ-YAAD-EPIFSVSVLTNEGLDQLEQAIADLF 401 >gi|158521130|ref|YP_001529000.1| GTP-binding protein Era [Desulfococcus oleovorans Hxd3] gi|158509956|gb|ABW66923.1| GTP-binding protein Era [Desulfococcus oleovorans Hxd3] Length = 303 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 58/185 (31%), Positives = 90/185 (48%), Gaps = 21/185 (11%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIIN----GVIFNIVDTAGI 60 IAI G PN GKSTL N L +K+++ + P TR+R+ G ++N V+F VDT GI Sbjct: 16 IAICGPPNAGKSTLLNLLAGEKISITSDKPQTTRNRILG--VVNRKNAQVVF--VDTPGI 71 Query: 61 --ADGK-NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIV 117 GK N +I A+ + +IL +ID +H L+ N P+++ Sbjct: 72 FRPKGKLNTAIVGTAVS----ALADVDVILLVIDVVKPRKDAEHLTIEHLKHHNKPVVLA 127 Query: 118 SNKMDTRIAQRNFYEIYS-----LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPL 172 NK+D RI + E+ F+ IV ISA + T +L + + + + P P Sbjct: 128 LNKID-RIKKHKLLEMIDSWQRLYAFERIVPISALESIQTEDLMAELETLLPEGGPLFPE 186 Query: 173 EMIEN 177 EM+ + Sbjct: 187 EMLTD 191 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 60/122 (49%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA+ G PN GKSTL+N L G +T + TR+ + N KN + DT G+ +P Sbjct: 16 IAICGPPNAGKSTLLNLLAGEKISITSDKPQTTRNRILGVVNRKNAQVVFVDTPGIFRPK 75 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L V ++ ++ + ++++D P + + ++ + + VVLALNK D Sbjct: 76 G---KLNTAIVGTAVSALADVDVILLVIDVVKPRKDAEHLTIEHLKHHNKPVVLALNKID 132 Query: 326 MV 327 + Sbjct: 133 RI 134 >gi|315654892|ref|ZP_07907797.1| GTP-binding protein Era [Mobiluncus curtisii ATCC 51333] gi|315490853|gb|EFU80473.1| GTP-binding protein Era [Mobiluncus curtisii ATCC 51333] Length = 350 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 53/180 (29%), Positives = 87/180 (48%), Gaps = 10/180 (5%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFN--IVDTAGIADG 63 A++G PNVGKSTL N +V +K+A+ + P TR G I++ F +VDT GI Sbjct: 60 AVIGRPNVGKSTLINAMVGRKIAITSDRPETTRRVARG--IVHRPDFQLILVDTPGIHRP 117 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAIT-SFLRKKNIPIIIVSNKMD 122 + + +++ND + A +E + +F + + I P D I + L+ + P I V K D Sbjct: 118 RTL-LGQRLNDMVDDAFSEVDVAVFCVPADQPIGPGDRRIVETQLKTAHFPAIAVVTKTD 176 Query: 123 T----RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 +IA++ DF EIV ISA L ++ + P +P + + + Sbjct: 177 AASREQIAEQLLAVSQLHDFAEIVPISAHQGTQVQTLVDLLGQRLPLSPPLYPRDQVTDE 236 Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 44/163 (26%), Positives = 72/163 (44%), Gaps = 6/163 (3%) Query: 207 AVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSR 266 AV+GRPNVGKSTLIN ++G +T + TR + + + + DT G+ +P Sbjct: 60 AVIGRPNVGKSTLINAMVGRKIAITSDRPETTRRVARGIVHRPDFQLILVDTPGIHRPRT 119 Query: 267 ITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLA-LNKWD 325 + V + V + + + A P D RIV++ T H +A + K D Sbjct: 120 LLGQRLNDMVDDAFSEV---DVAVFCVPADQPIGPGDRRIVETQLKTAHFPAIAVVTKTD 176 Query: 326 MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLM 368 S + Q L + + +I + I+ G + L DL+ Sbjct: 177 AASREQIAEQLLAVSQLHDFAEI--VPISAHQGTQVQTLVDLL 217 >gi|315022654|gb|EFT35679.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Riemerella anatipestifer RA-YM] Length = 490 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 45/121 (37%), Positives = 72/121 (59%), Gaps = 5/121 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PN GKSTL N L+K++ A+V + G TRD + I G F +DTAGI D Sbjct: 248 VAIIGKPNAGKSTLLNALLKEERAIVSDIAGTTRDTIEEVLHIGGHAFRFIDTAGIRDTA 307 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYD--HAITSFLRKKNIPIIIVSNKMD 122 + + ++ + IN A ++L+L D K TP + + ITS L + ++ +I++ NK+D Sbjct: 308 D-RVESIGVEKAKEKINTADILLYLFDIKDS-TPNEIINFITS-LERPDLKVILLQNKID 364 Query: 123 T 123 + Sbjct: 365 S 365 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/130 (30%), Positives = 66/130 (50%), Gaps = 6/130 (4%) Query: 196 SVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEI 255 +VKN +++A++G+PN GKSTL+N LL R + +G TRD++ + H Sbjct: 241 AVKN---GVQVAIIGKPNAGKSTLLNALLKEERAIVSDIAGTTRDTIEEVLHIGGHAFRF 297 Query: 256 FDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGH 315 DTAG+R + ES+ V+K+ + + T + + L D + + + S+ Sbjct: 298 IDTAGIRDTADRVESI---GVEKAKEKINTADILLYLFDIKDSTPNEIINFITSLERPDL 354 Query: 316 AVVLALNKWD 325 V+L NK D Sbjct: 355 KVILLQNKID 364 >gi|329766983|ref|ZP_08258511.1| GTP-binding protein Era [Gemella haemolysans M341] gi|328837708|gb|EGF87333.1| GTP-binding protein Era [Gemella haemolysans M341] Length = 302 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 51/193 (26%), Positives = 93/193 (48%), Gaps = 13/193 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + I+G PN GKSTL N ++++K+A++ + P TR+ + G N +DT GI K Sbjct: 11 VTIIGRPNAGKSTLLNNILQQKIAIMSDKPQTTRNIINGVYTDNDSQIVFIDTPGIHKPK 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + M AI E+ ++ +I++ P D + + +++ +P ++ NK+D Sbjct: 71 H-RLGDYMMKLASSAIQESEIVYLIINASEKFGPGDQHLINIVKELKVPTFLLINKIDL- 128 Query: 125 IAQRNFYEIYSL-----DFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNK 179 I+ +I DF EIV ISA + L + K + + +P ++I + Sbjct: 129 ISPEQLIQIIEFYKDLYDFVEIVPISALKSINVDNLLNTTKKYLQPSFKMYPDDVITD-- 186 Query: 180 RNEESPKENITSE 192 SP+ + SE Sbjct: 187 ----SPEYFVISE 195 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 31/123 (25%), Positives = 60/123 (48%), Gaps = 3/123 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 + ++GRPN GKSTL+N +L + + TR+ ++ + + I DT G+ KP Sbjct: 11 VTIIGRPNAGKSTLLNNILQQKIAIMSDKPQTTRNIINGVYTDNDSQIVFIDTPGIHKPK 70 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L +K + +++ E ++++A+ F D +++ V L +NK D Sbjct: 71 H---RLGDYMMKLASSAIQESEIVYLIINASEKFGPGDQHLINIVKELKVPTFLLINKID 127 Query: 326 MVS 328 ++S Sbjct: 128 LIS 130 >gi|322372543|ref|ZP_08047079.1| GTP-binding protein Era [Streptococcus sp. C150] gi|321277585|gb|EFX54654.1| GTP-binding protein Era [Streptococcus sp. C150] Length = 299 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 48/178 (26%), Positives = 87/178 (48%), Gaps = 5/178 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKST N ++ +K+A++ + TR+++ G + +DT GI K Sbjct: 8 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 ++ M + + E +LF++ + D I L++ +P+I+V NK+D Sbjct: 68 -TALGDFMVESAYSTLREVDTVLFMVPADEPRGKGDDMIIERLKQAKVPVILVVNKIDKV 126 Query: 125 IAQRNFYEI----YSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 + +I +DFKEI+ ISA S L V+ ++ + P + I ++ Sbjct: 127 HPDQLLEQIDDFRTQMDFKEIIPISALQGNNVSHLVDVLSDNLEEGFQYFPSDQITDH 184 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 39/137 (28%), Positives = 68/137 (49%), Gaps = 5/137 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKST +N ++G + ++ TR+ + + I DT G+ KP Sbjct: 8 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +L V+ + ++R +T + ++ A P K D I++ + V+L +NK D Sbjct: 68 T---ALGDFMVESAYSTLREVDTVLFMVPADEPRGKGDDMIIERLKQAKVPVILVVNKID 124 Query: 326 MV--SDKLNLLQDLRTK 340 V L + D RT+ Sbjct: 125 KVHPDQLLEQIDDFRTQ 141 >gi|220936472|ref|YP_002515371.1| tRNA modification GTPase TrmE [Thioalkalivibrio sp. HL-EbGR7] gi|219997782|gb|ACL74384.1| tRNA modification GTPase TrmE [Thioalkalivibrio sp. HL-EbGR7] Length = 446 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 40/118 (33%), Positives = 68/118 (57%), Gaps = 2/118 (1%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + I G PN GKS+L NRLV+++ A+V + PG TRD L ++G+ ++VDTAG+ + Sbjct: 220 LVIAGRPNAGKSSLLNRLVRREAAIVTHIPGTTRDVLRETVSLDGLPLHLVDTAGLRESD 279 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + + ++ + I A +L ++D G + AI + L ++P+I V NK+D Sbjct: 280 D-PVEQEGIRRAWAEIEAADAVLLVVDDALGEGEEEAAIRARL-PGHLPVICVHNKID 335 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 34/137 (24%), Positives = 71/137 (51%), Gaps = 6/137 (4%) Query: 193 GKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHP 252 G + + + LR+ + GRPN GKS+L+NRL+ + G TRD + + + P Sbjct: 207 GAAQGALLREGLRLVIAGRPNAGKSSLLNRLVRREAAIVTHIPGTTRDVLRETVSLDGLP 266 Query: 253 IEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFN 312 + + DTAG+R+ + +EQ+ ++++ + + ++++D + +++ I + Sbjct: 267 LHLVDTAGLRESD---DPVEQEGIRRAWAEIEAADAVLLVVDDALGEGEEEAAIRARL-- 321 Query: 313 TGHAVVLAL-NKWDMVS 328 GH V+ + NK D+ Sbjct: 322 PGHLPVICVHNKIDLTG 338 >gi|281419980|ref|ZP_06250979.1| thiophene and furan oxidation protein ThdF [Prevotella copri DSM 18205] gi|281405780|gb|EFB36460.1| thiophene and furan oxidation protein ThdF [Prevotella copri DSM 18205] Length = 341 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 42/121 (34%), Positives = 70/121 (57%), Gaps = 8/121 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 +AIVG NVGKSTL NRL+ ++ A+V + G TRD + +I+G+ F +DTAGI Sbjct: 99 AVAIVGKTNVGKSTLLNRLLHEEKAIVSDIHGTTRDVIEDTTLIDGITFRFIDTAGIR-- 156 Query: 64 KNCSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSF-LRKKNIPIIIVSNKM 121 K + + + ++T + EA ++++L+D + P I L+ + +++V NKM Sbjct: 157 KTDDVVENIGIERTFQKMEEAKIVIWLLDEQ----PSASEIEEMKLKNQGKKLLVVFNKM 212 Query: 122 D 122 D Sbjct: 213 D 213 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 82/172 (47%), Gaps = 16/172 (9%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + + +A+VG+ NVGKSTL+NRLL + + G TRD + + DTA Sbjct: 94 LKQGVAVAIVGKTNVGKSTLLNRLLHEEKAIVSDIHGTTRDVIEDTTLIDGITFRFIDTA 153 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLD---ATIPFEKQDLRIVDSVFNTGHA 316 G+RK + E++ ++++ Q + + I LLD + E+ L+ N G Sbjct: 154 GIRKTDDVVENI---GIERTFQKMEEAKIVIWLLDEQPSASEIEEMKLK------NQGKK 204 Query: 317 VVLALNKWD-MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDL 367 +++ NK D + +DKL + + + ++ IS RTGE + L Sbjct: 205 LLVVFNKMDKLENDKLAFDKFTHSCGSDSSESEAPLF---ISARTGENVSSL 253 >gi|237807624|ref|YP_002892064.1| GTP-binding protein Era [Tolumonas auensis DSM 9187] gi|237499885|gb|ACQ92478.1| GTP-binding protein Era [Tolumonas auensis DSM 9187] Length = 300 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 77/155 (49%), Gaps = 20/155 (12%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N+L+ +K+++ P TR R+ G VDT G+ + Sbjct: 11 VAIVGRPNVGKSTLLNKLLGQKVSITSRKPQTTRHRILGIDTQGAYQTIFVDTPGLHIEE 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 +I + MN ++ + +++F++D T D + + LR + P+++ NK+D Sbjct: 71 KRAINRLMNRAATSSLGDVEMVVFVVDG-THWTDDDEMVLNKLRHMHCPVVLAVNKVDVI 129 Query: 124 -----------RIAQRNFYEIYSLDFKEIVEISAE 147 +AQ+ +F EI+ ISAE Sbjct: 130 KDKEILLPHLQMLAQKG-------NFAEILPISAE 157 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 48/146 (32%), Positives = 76/146 (52%), Gaps = 8/146 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIF-DTAGMR-K 263 +A+VGRPNVGKSTL+N+LLG +T + TR + + + + IF DT G+ + Sbjct: 11 VAIVGRPNVGKSTLLNKLLGQKVSITSRKPQTTRHRI-LGIDTQGAYQTIFVDTPGLHIE 69 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 R L + S+ V E + ++D T + D +++ + + VVLA+NK Sbjct: 70 EKRAINRLMNRAATSSLGDV---EMVVFVVDGT-HWTDDDEMVLNKLRHMHCPVVLAVNK 125 Query: 324 WDMVSDKLNLLQDLRTKAIK-NLPQI 348 D++ DK LL L+ A K N +I Sbjct: 126 VDVIKDKEILLPHLQMLAQKGNFAEI 151 >gi|221214581|ref|ZP_03587551.1| tRNA modification GTPase TrmE [Burkholderia multivorans CGD1] gi|221165471|gb|EED97947.1| tRNA modification GTPase TrmE [Burkholderia multivorans CGD1] Length = 464 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 49/164 (29%), Positives = 85/164 (51%), Gaps = 12/164 (7%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 ++ + G PNVGKS+L N L ++A+V G TRD++ + G+ +I+DTAG+ + Sbjct: 228 SVVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRET 287 Query: 64 KN----CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 ++ IA+ ++ I A ++L L+DS+ G+T D AI + +P++ V N Sbjct: 288 EDEVERIGIARTWSE-----IERADVVLHLLDSRTGMTADDDAIAARF-PAGVPVVRVLN 341 Query: 120 KMD-TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKI 162 K D T + + D E V +SA+ G L + + +I Sbjct: 342 KTDLTGVPASVAHPAAEGDLTE-VHLSAKRGDGIDLLRAELLRI 384 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 50/188 (26%), Positives = 87/188 (46%), Gaps = 14/188 (7%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + L + + G+PNVGKS+L+N L G + +G TRD V+ + + P+ I DTA Sbjct: 223 LREGLSVVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTA 282 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R+ + +E+ + ++ + + + LLD+ D I + F G VV Sbjct: 283 GLRETE---DEVERIGIARTWSEIERADVVLHLLDSRTGMTADDDAIA-ARFPAGVPVVR 338 Query: 320 ALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWK 379 LNK D+ ++ + GD+ +S + G+G+D L +L I W+ Sbjct: 339 VLNKTDLTG---------VPASVAHPAAEGDLTEVHLSAKRGDGIDLLRAELLRIAG-WQ 388 Query: 380 TRITTSYL 387 YL Sbjct: 389 AGAEGVYL 396 >gi|229827515|ref|ZP_04453584.1| hypothetical protein GCWU000182_02904 [Abiotrophia defectiva ATCC 49176] gi|229788453|gb|EEP24567.1| hypothetical protein GCWU000182_02904 [Abiotrophia defectiva ATCC 49176] Length = 305 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 48/175 (27%), Positives = 85/175 (48%), Gaps = 15/175 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIV--DTAGIAD 62 + ++G PNVGKSTL N L+ +K+A+ + P TR+R+ Q + I+ DT GI Sbjct: 9 VTLIGRPNVGKSTLMNNLIGQKIAITSSKPQTTRNRI--QTVYTDETGQIIFLDTPGIHK 66 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 +N + + M+ E ++E ++L+L++ I + I L P+I+V NK+D Sbjct: 67 AQN-KLGEYMDSVAERTLSEVDVVLWLVEPTTFIGKGEQHIAELLSATKTPVILVVNKID 125 Query: 123 TRIAQRNFYEIYS-----LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPL 172 T + + + ++FK V +SA +L +F + P P+ Sbjct: 126 T-VEKGELLPVIDKYKDMVNFKACVPVSAATGENKEDLLETVFDLL----PEGPM 175 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 46/170 (27%), Positives = 81/170 (47%), Gaps = 10/170 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 + ++GRPNVGKSTL+N L+G +T S+ TR+ + + + I DT G+ K Sbjct: 9 VTLIGRPNVGKSTLMNNLIGQKIAITSSKPQTTRNRIQTVYTDETGQIIFLDTPGIHKAQ 68 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 ++++ V + + L++ T K + I + + T V+L +NK D Sbjct: 69 NKLGEYMDSVAERTLSEV---DVVLWLVEPTTFIGKGEQHIAELLSATKTPVILVVNKID 125 Query: 326 MVSDKLNLLQDL-RTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEI 374 V +K LL + + K + N +S TGE +DL+ +V ++ Sbjct: 126 TV-EKGELLPVIDKYKDMVNFKA-----CVPVSAATGENKEDLLETVFDL 169 >gi|254461121|ref|ZP_05074537.1| tRNA modification GTPase TrmE [Rhodobacterales bacterium HTCC2083] gi|206677710|gb|EDZ42197.1| tRNA modification GTPase TrmE [Rhodobacteraceae bacterium HTCC2083] Length = 430 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 45/184 (24%), Positives = 83/184 (45%), Gaps = 39/184 (21%) Query: 191 SEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKN 250 +EG + + I +A++G PNVGKSTL+N + G + +T +G TRD + + + Sbjct: 201 AEGVKTAERIRAGFEVAIIGPPNVGKSTLLNSIAGRDAAITSEYAGTTRDVIEVKLDLNG 260 Query: 251 HPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVL---LDATIPFEKQDLRIV 307 P+ I DTAG+R+ E + + +++ + + L ++ P E++ Sbjct: 261 LPVTILDTAGLRETEDFVEKI---GIDRALDRAEKADLRVFLKSTVEEQFPIEQR----- 312 Query: 308 DSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDL 367 + L K D+ D RT+ ++SG+TGEG+D L Sbjct: 313 -------SGDIEMLGKADLFVD--------RTR-------------RSVSGKTGEGVDHL 344 Query: 368 MVSV 371 + ++ Sbjct: 345 VAAI 348 Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 37/58 (63%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 + +AI+G PNVGKSTL N + + A+ + G TRD + + +NG+ I+DTAG+ Sbjct: 214 FEVAIIGPPNVGKSTLLNSIAGRDAAITSEYAGTTRDVIEVKLDLNGLPVTILDTAGL 271 >gi|304389932|ref|ZP_07371889.1| GTP-binding protein Era [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315657184|ref|ZP_07910068.1| GTP-binding protein Era [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|304326825|gb|EFL94066.1| GTP-binding protein Era [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315492287|gb|EFU81894.1| GTP-binding protein Era [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 333 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 54/173 (31%), Positives = 85/173 (49%), Gaps = 14/173 (8%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFN--IVDTAGIADG 63 A++G PNVGKSTL N +V +K+A+ + P T R + I++ F +VDT GI Sbjct: 43 AVIGRPNVGKSTLINAMVGRKIAITSDRPETT--RRVARGIVHRPDFQLILVDTPGIHRP 100 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAIT-SFLRKKNIPIIIVSNKMD 122 + + +++ND + A +E + +F + + I P D I + L+ + P I V K D Sbjct: 101 RTL-LGQRLNDMVDDAFSEVDVAVFCVPADQPIGPGDRRIVETQLKTAHFPAIAVVTKTD 159 Query: 123 T----RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHP 171 +IA++ DF EIV ISA GT + + Q+ P P Sbjct: 160 AASREQIAEQLLAVSQLHDFAEIVPISAHQ--GTQV--QTLIDLLGQRLPLSP 208 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 44/163 (26%), Positives = 72/163 (44%), Gaps = 6/163 (3%) Query: 207 AVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSR 266 AV+GRPNVGKSTLIN ++G +T + TR + + + + DT G+ +P Sbjct: 43 AVIGRPNVGKSTLINAMVGRKIAITSDRPETTRRVARGIVHRPDFQLILVDTPGIHRPRT 102 Query: 267 ITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLA-LNKWD 325 + V + V + + + A P D RIV++ T H +A + K D Sbjct: 103 LLGQRLNDMVDDAFSEV---DVAVFCVPADQPIGPGDRRIVETQLKTAHFPAIAVVTKTD 159 Query: 326 MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLM 368 S + Q L + + +I + I+ G + L DL+ Sbjct: 160 AASREQIAEQLLAVSQLHDFAEI--VPISAHQGTQVQTLIDLL 200 >gi|212211699|ref|YP_002302635.1| tRNA modification GTPase TrmE [Coxiella burnetii CbuG_Q212] gi|212010109|gb|ACJ17490.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase [Coxiella burnetii CbuG_Q212] Length = 473 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 41/121 (33%), Positives = 70/121 (57%), Gaps = 3/121 (2%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+ I G PNVGKS+L N L ++ A+V + G TRD + I+G+ ++VDTAG+ Sbjct: 239 TVVIAGEPNVGKSSLLNLLSGQETAIVTDIAGTTRDIIRESIHIDGLPIHVVDTAGLRLT 298 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKN--IPIIIVSNKM 121 ++ + K+ +T+ A+ +A L+L +ID+ + I + + + IP +IV NK+ Sbjct: 299 EDV-VEKEGVRRTQKAVQQADLLLLMIDASKPTEDFKKIIAQWFSENDNKIPTLIVENKI 357 Query: 122 D 122 D Sbjct: 358 D 358 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 61/246 (24%), Positives = 113/246 (45%), Gaps = 35/246 (14%) Query: 114 IIIVSNKMDTRIAQRNFYEIYSLDFKEIVE--------ISAEHDLGTSELHSVIFKIFKQ 165 +I S++ R A R+ +S ++V+ I A D E+ + + K+ Sbjct: 153 LINASSEQAARSAMRSLQGEFSKRIHQLVDALIQLRMYIEASIDFPEEEIDFLADERIKE 212 Query: 166 KYPN--HPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRL 223 N H ++ IE + +E IT + + G PNVGKS+L+N L Sbjct: 213 TLENLTHQVQEIEKTAKQGALLREGIT---------------VVIAGEPNVGKSSLLNLL 257 Query: 224 LGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITES-LEQKTVKKSMQS 282 G + +G TRD + S + PI + DTAG+ R+TE +E++ V+++ ++ Sbjct: 258 SGQETAIVTDIAGTTRDIIRESIHIDGLPIHVVDTAGL----RLTEDVVEKEGVRRTQKA 313 Query: 283 VRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAI 342 V+ + ++++DA+ P E +I+ F+ + L +V +K++L+ + K Sbjct: 314 VQQADLLLLMIDASKPTEDFK-KIIAQWFSENDNKIPTL----IVENKIDLIGEAPRKEN 368 Query: 343 KNLPQI 348 K P I Sbjct: 369 KEYPHI 374 >gi|295103710|emb|CBL01254.1| tRNA modification GTPase TrmE [Faecalibacterium prausnitzii SL3/3] Length = 456 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 65/120 (54%), Gaps = 5/120 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 A+VGRPN GKSTL+N L G++R + +G TRD V + + + +FDTAG+R+ Sbjct: 224 CAIVGRPNAGKSTLLNLLAGFDRAIVTPVAGTTRDVVEQAVQLGDIRLNLFDTAGLRE-- 281 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +++E + +++S + + + + D + P ++DL + G + +NK D Sbjct: 282 -TEDAIEAEGIRRSWKKLEEAGLILAVFDGSEPPSREDLALAQRC--AGRPAIALVNKED 338 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 57/118 (48%), Gaps = 3/118 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 AIVG PN GKSTL N L A+V G TRD + + + N+ DTAG+ + + Sbjct: 224 CAIVGRPNAGKSTLLNLLAGFDRAIVTPVAGTTRDVVEQAVQLGDIRLNLFDTAGLRETE 283 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + +I + ++ + EA LIL + D + D A+ R P I + NK D Sbjct: 284 D-AIEAEGIRRSWKKLEEAGLILAVFDGSEPPSREDLALAQ--RCAGRPAIALVNKED 338 >gi|293391847|ref|ZP_06636181.1| GTP-binding protein Era [Aggregatibacter actinomycetemcomitans D7S-1] gi|290952381|gb|EFE02500.1| GTP-binding protein Era [Aggregatibacter actinomycetemcomitans D7S-1] Length = 302 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 51/176 (28%), Positives = 87/176 (49%), Gaps = 6/176 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N+++ +K+++ TR R+ G VDT G+ + Sbjct: 13 IAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIKTEGAYQEIYVDTPGLHIEE 72 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN AI++ L++F++D D + + LRK P+++ NK+D Sbjct: 73 KRAINRLMNRAASSAISDVELVIFVVDG-THWNDDDEMVLNKLRKTKAPVVLAINKIDNI 131 Query: 125 IAQRNFY----EIYS-LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 + + EI S +F ++V ISAE + L ++ K + + P + + Sbjct: 132 KNKDDLLPFITEISSKFNFADVVPISAEKGNNINVLEQIVRKSLRPGIHHFPEDYV 187 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 43/131 (32%), Positives = 70/131 (53%), Gaps = 7/131 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIF-DTAGMR-K 263 IA+VGRPNVGKSTL+N++LG +T ++ TR + + + EI+ DT G+ + Sbjct: 13 IAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRI-VGIKTEGAYQEIYVDTPGLHIE 71 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 R L + ++ V E I ++D T + D +++ + T VVLA+NK Sbjct: 72 EKRAINRLMNRAASSAISDV---ELVIFVVDGT-HWNDDDEMVLNKLRKTKAPVVLAINK 127 Query: 324 WDMVSDKLNLL 334 D + +K +LL Sbjct: 128 IDNIKNKDDLL 138 >gi|226490853|ref|NP_001149416.1| LOC100283042 [Zea mays] gi|195627080|gb|ACG35370.1| tRNA modification GTPase trmE [Zea mays] Length = 546 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 53/166 (31%), Positives = 85/166 (51%), Gaps = 10/166 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAI+G PNVGKS+L N K + A+V G TRD + I+GV ++DTAGI + Sbjct: 302 IAIIGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVVEANVSIHGVPVTLLDTAGIRETD 361 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFL---RKKN---IPIIIVS 118 + + K ++E A A LI+ I + G T D + + RK + +P+++V Sbjct: 362 DV-VEKIGVKRSEAAAMGADLIVMAISAVDGWTDDDTKLMEHVSVNRKSSGSAVPMVLVI 420 Query: 119 NKMDTR--IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKI 162 NK+D + F + L F++ V+ A G S+L S + ++ Sbjct: 421 NKVDCAPFVPGEQFKQFSGL-FRKHVQTCAVTGKGISDLESAVIEV 465 Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 48/184 (26%), Positives = 93/184 (50%), Gaps = 13/184 (7%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + L+IA++GRPNVGKS+L+N R + +G TRD V + + P+ + D Sbjct: 294 KLLQSGLQIAIIGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVVEANVSIHGVPVTLLD 353 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVF----NT 313 TAG+R+ + E + VK+S + + ++ + A + D ++++ V ++ Sbjct: 354 TAGIRETDDVVEKI---GVKRSEAAAMGADLIVMAISAVDGWTDDDTKLMEHVSVNRKSS 410 Query: 314 GHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 G AV + L V +K++ + + K + ++ T + TG+G+ DL +V+E Sbjct: 411 GSAVPMVL-----VINKVDCAPFVPGEQFKQFSGLFRKHVQTCA-VTGKGISDLESAVIE 464 Query: 374 INKL 377 + + Sbjct: 465 VRGI 468 >gi|15675063|ref|NP_269237.1| tRNA modification GTPase TrmE [Streptococcus pyogenes M1 GAS] gi|71910607|ref|YP_282157.1| tRNA modification GTPase TrmE [Streptococcus pyogenes MGAS5005] gi|21363025|sp|Q99ZU0|MNME_STRP1 RecName: Full=tRNA modification GTPase mnmE gi|13622217|gb|AAK33958.1| putative thiophene degradation protein F [Streptococcus pyogenes M1 GAS] gi|71853389|gb|AAZ51412.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase [Streptococcus pyogenes MGAS5005] Length = 458 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 41/129 (31%), Positives = 78/129 (60%), Gaps = 5/129 (3%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L A++GRPNVGKS+L+N LL ++ + +G TRD + N K P+++ D Sbjct: 219 KILREGLSTAIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPLKLVD 278 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ + +EQ V++S ++++ + +++L+A+ QD R + ++ + + Sbjct: 279 TAGIRETDDL---VEQIGVERSKKALQEADLVLLVLNASEKLTDQD-RALLNLSQDSNRI 334 Query: 318 VLALNKWDM 326 +L LNK D+ Sbjct: 335 IL-LNKTDL 342 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 42/118 (35%), Positives = 71/118 (60%), Gaps = 5/118 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+++ A+V + G TRD + I GV +VDTAGI + + Sbjct: 228 AIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPLKLVDTAGIRETDD 287 Query: 66 CSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + +Q+ ++++ A+ EA L+L ++++ +T D A+ + + N II+ NK D Sbjct: 288 --LVEQIGVERSKKALQEADLVLLVLNASEKLTDQDRALLNLSQDSN--RIILLNKTD 341 >gi|89094543|ref|ZP_01167481.1| GTP-binding protein Era [Oceanospirillum sp. MED92] gi|89081142|gb|EAR60376.1| GTP-binding protein Era [Oceanospirillum sp. MED92] Length = 311 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 47/162 (29%), Positives = 84/162 (51%), Gaps = 9/162 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA--D 62 +AIVG PNVGKSTL N ++ +K+++ P TR ++ G + VDT G+ D Sbjct: 21 VAIVGRPNVGKSTLMNHILGQKLSITSKKPQTTRHQIMGIKTEGDLQIVYVDTPGLHKDD 80 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 GK ++ + MN A+ + LI+F++D A T D + ++ P+I+ NK+D Sbjct: 81 GKK-ALNRYMNKAASDALRDVDLIVFIVDRTA-WTEEDQMVLDKVKHARCPVILAVNKVD 138 Query: 123 TRIAQRNFY-EIYS----LDFKEIVEISAEHDLGTSELHSVI 159 + + ++ S ++F E++ +SA+ +L +I Sbjct: 139 QLKDKASLLPQMQSHSERMEFAEMIPLSAKQGHNVEQLEELI 180 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 88/167 (52%), Gaps = 3/167 (1%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VGRPNVGKSTL+N +LG +T + TR + + I DT G+ K Sbjct: 21 VAIVGRPNVGKSTLMNHILGQKLSITSKKPQTTRHQIMGIKTEGDLQIVYVDTPGLHKDD 80 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 ++L + K + ++R + + ++D T + ++D ++D V + V+LA+NK D Sbjct: 81 G-KKALNRYMNKAASDALRDVDLIVFIVDRT-AWTEEDQMVLDKVKHARCPVILAVNKVD 138 Query: 326 MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVL 372 + DK +LL +++ + + + I ++ G E L++L+ S + Sbjct: 139 QLKDKASLLPQMQSHS-ERMEFAEMIPLSAKQGHNVEQLEELIASYM 184 >gi|319639448|ref|ZP_07994198.1| tRNA modification GTPase mnmE [Neisseria mucosa C102] gi|317399343|gb|EFV80014.1| tRNA modification GTPase mnmE [Neisseria mucosa C102] Length = 454 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 42/119 (35%), Positives = 71/119 (59%), Gaps = 4/119 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + +VGAPNVGKS+L N L +A+V + G TRD + Q ++GV +I+DTAG+ + Sbjct: 220 VVLVGAPNVGKSSLLNALAGDDIAIVTDIAGTTRDTVREQITLDGVPVHIIDTAGLRETD 279 Query: 65 NCSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + + +Q+ +++ A++EA + L LID + G+ AI + L + + I + NK D Sbjct: 280 D--VVEQIGIERSRKAVSEADVALILIDPREGVNAKTQAILNSL-PEGLKKIEIHNKAD 335 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 48/174 (27%), Positives = 88/174 (50%), Gaps = 11/174 (6%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + + + +VG PNVGKS+L+N L G + + +G TRD+V P+ I DTA Sbjct: 214 LREGMNVVLVGAPNVGKSSLLNALAGDDIAIVTDIAGTTRDTVREQITLDGVPVHIIDTA 273 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R+ + +EQ +++S ++V + ++L+D + I++S G + Sbjct: 274 GLRETDDV---VEQIGIERSRKAVSEADVALILIDPREGVNAKTQAILNS-LPEGLKKIE 329 Query: 320 ALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 NK D+ + + + D L Q G + ++S +TG GLD L ++L+ Sbjct: 330 IHNKADLTGEPVAVRSD-------GLAQTGADTVISLSAKTGAGLDLLKHALLQ 376 >gi|329946930|ref|ZP_08294342.1| ribosome biogenesis GTPase Era [Actinomyces sp. oral taxon 170 str. F0386] gi|328526741|gb|EGF53754.1| ribosome biogenesis GTPase Era [Actinomyces sp. oral taxon 170 str. F0386] Length = 424 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 49/169 (28%), Positives = 79/169 (46%), Gaps = 5/169 (2%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PN GKSTL N LV K+A+ P TR + G +VDT G+ + Sbjct: 130 IVGRPNAGKSTLTNALVGAKIAITSGRPQTTRHNVRGVIHKEKAQIVLVDTPGLHRPRTL 189 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 + K++ND + + +++F I + I P D IT L + P++ V K DT Sbjct: 190 -LGKRLNDLVRETLTDVDVVVFCIPANEKIGPGDRFITRDLAELRTPVVAVVTKADTVTR 248 Query: 127 QRNFYEIYSLD----FKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHP 171 + ++ ++D + +IV +SA+ + L V+ K P +P Sbjct: 249 EALAAQLLAVDQLGEWADIVPVSAQRNEQIDVLEEVLLKHMPLSPPLYP 297 Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 32/57 (56%) Query: 208 VVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP 264 +VGRPN GKSTL N L+G +T + TR +V + + I + DT G+ +P Sbjct: 130 IVGRPNAGKSTLTNALVGAKIAITSGRPQTTRHNVRGVIHKEKAQIVLVDTPGLHRP 186 >gi|213962698|ref|ZP_03390959.1| tRNA modification GTPase TrmE [Capnocytophaga sputigena Capno] gi|213954693|gb|EEB66014.1| tRNA modification GTPase TrmE [Capnocytophaga sputigena Capno] Length = 471 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 44/121 (36%), Positives = 66/121 (54%), Gaps = 7/121 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PN GKSTL N L+ ++ A+V + G TRD + I G+ F +DTAGI D + Sbjct: 230 VAIVGKPNAGKSTLLNALLNEERAIVSDIAGTTRDTIEETLHIGGIAFRFIDTAGIRDTQ 289 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLR---KKNIPIIIVSNKM 121 + A + E I +A +ILFL D K IT+F++ ++ +++ NK Sbjct: 290 DQIEAIGVQKAKE-KIEKASVILFLFDDKDNTVS---EITTFVKENYREGTKYVLLHNKT 345 Query: 122 D 122 D Sbjct: 346 D 346 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 47/176 (26%), Positives = 80/176 (45%), Gaps = 14/176 (7%) Query: 196 SVKNISK-PLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIE 254 SV N+ K + +A+VG+PN GKSTL+N LL R + +G TRD++ + + Sbjct: 219 SVGNVLKNGIPVAIVGKPNAGKSTLLNALLNEERAIVSDIAGTTRDTIEETLHIGGIAFR 278 Query: 255 IFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTG 314 DTAG+R + +E V+K+ + + + L D + V + G Sbjct: 279 FIDTAGIRDTQ---DQIEAIGVQKAKEKIEKASVILFLFDDKDNTVSEITTFVKENYREG 335 Query: 315 HAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINT---ISGRTGEGLDDL 367 VL NK D+ ++ D +++K Y +T IS + G+ + +L Sbjct: 336 TKYVLLHNKTDLSPEETTAFDDEILQSLKG-------YTDTLLRISAKEGQNITEL 384 >gi|221201821|ref|ZP_03574858.1| tRNA modification GTPase TrmE [Burkholderia multivorans CGD2M] gi|221207673|ref|ZP_03580681.1| tRNA modification GTPase TrmE [Burkholderia multivorans CGD2] gi|221172519|gb|EEE04958.1| tRNA modification GTPase TrmE [Burkholderia multivorans CGD2] gi|221178241|gb|EEE10651.1| tRNA modification GTPase TrmE [Burkholderia multivorans CGD2M] Length = 464 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 49/164 (29%), Positives = 85/164 (51%), Gaps = 12/164 (7%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 ++ + G PNVGKS+L N L ++A+V G TRD++ + G+ +I+DTAG+ + Sbjct: 228 SVVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRET 287 Query: 64 KN----CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 ++ IA+ ++ I A ++L L+DS+ G+T D AI + +P++ V N Sbjct: 288 EDEVERIGIARTWSE-----IERADVVLHLLDSRTGMTADDDAIAARF-PAGVPVVRVLN 341 Query: 120 KMD-TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKI 162 K D T + + D E V +SA+ G L + + +I Sbjct: 342 KTDLTGVPASVAHPAAEGDLTE-VHLSAKRGDGIDLLRAELLRI 384 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 50/188 (26%), Positives = 87/188 (46%), Gaps = 14/188 (7%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + L + + G+PNVGKS+L+N L G + +G TRD V+ + + P+ I DTA Sbjct: 223 LREGLSVVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTA 282 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R+ + +E+ + ++ + + + LLD+ D I + F G VV Sbjct: 283 GLRETE---DEVERIGIARTWSEIERADVVLHLLDSRTGMTADDDAIA-ARFPAGVPVVR 338 Query: 320 ALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWK 379 LNK D+ ++ + GD+ +S + G+G+D L +L I W+ Sbjct: 339 VLNKTDLTG---------VPASVAHPAAEGDLTEVHLSAKRGDGIDLLRAELLRIAG-WQ 388 Query: 380 TRITTSYL 387 YL Sbjct: 389 AGAEGVYL 396 >gi|55820698|ref|YP_139140.1| GTP-binding protein Era [Streptococcus thermophilus LMG 18311] gi|55736683|gb|AAV60325.1| GTP-binding protein [Streptococcus thermophilus LMG 18311] Length = 299 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 48/178 (26%), Positives = 87/178 (48%), Gaps = 5/178 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKST N ++ +K+A++ + TR+++ G + +DT GI K Sbjct: 8 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 ++ M + + E +LF++ + D I L++ +P+I+V NK+D Sbjct: 68 -TALGDFMVESAYSTLREVDTVLFMVPADEPRGKGDDMIIERLKQAKVPVILVVNKIDKV 126 Query: 125 IAQRNFYEI----YSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 + +I +DFKEI+ ISA S L V+ ++ + P + I ++ Sbjct: 127 HPDQLLEQIDDFRKQMDFKEIIPISALQGNNVSHLVDVLSDNLEEGFQYFPSDQITDH 184 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKST +N ++G + ++ TR+ + + I DT G+ KP Sbjct: 8 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +L V+ + ++R +T + ++ A P K D I++ + V+L +NK D Sbjct: 68 T---ALGDFMVESAYSTLREVDTVLFMVPADEPRGKGDDMIIERLKQAKVPVILVVNKID 124 Query: 326 MV 327 V Sbjct: 125 KV 126 >gi|157151336|ref|YP_001450014.1| GTP-binding protein Era [Streptococcus gordonii str. Challis substr. CH1] gi|3334174|sp|O24756|ERA_STRGC RecName: Full=GTPase Era gi|2627217|dbj|BAA23582.1| GTP-binding protein [Streptococcus gordonii] gi|157076130|gb|ABV10813.1| GTP-binding protein Era [Streptococcus gordonii str. Challis substr. CH1] Length = 299 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 49/179 (27%), Positives = 89/179 (49%), Gaps = 7/179 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKST N ++ +K+A++ + TR+++ G + +DT GI K Sbjct: 8 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM--- 121 ++ M + + E +LF++ + D I L+ +P+I+V NK+ Sbjct: 68 -TALGDFMVEAAYSTLREVDTVLFMVPADEPRGKGDDMIIERLKAAKVPVILVVNKIDKV 126 Query: 122 --DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 D +AQ + + +DFKEIV ISA S L ++ + ++ + P + I ++ Sbjct: 127 HPDQLLAQIDDFR-QQMDFKEIVPISALQGNNVSRLVDILSENLEEGFQYFPEDQITDH 184 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKST +N ++G + ++ TR+ + + I DT G+ KP Sbjct: 8 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +L V+ + ++R +T + ++ A P K D I++ + V+L +NK D Sbjct: 68 ---TALGDFMVEAAYSTLREVDTVLFMVPADEPRGKGDDMIIERLKAAKVPVILVVNKID 124 Query: 326 MV 327 V Sbjct: 125 KV 126 >gi|319939220|ref|ZP_08013583.1| GTP-binding protein Era [Streptococcus anginosus 1_2_62CV] gi|319811616|gb|EFW07892.1| GTP-binding protein Era [Streptococcus anginosus 1_2_62CV] Length = 299 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 47/179 (26%), Positives = 89/179 (49%), Gaps = 7/179 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKST N ++ +K+A++ + TR+++ G + +DT GI K Sbjct: 8 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDQEQIVFIDTPGIHKPK 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM--- 121 ++ M + + E +LF++ + D I L+ +P+++V NK+ Sbjct: 68 -TALGDFMVESAYSTLREVDTVLFMVSADENRGKGDDMIMERLKVAKVPVVLVINKIDKV 126 Query: 122 --DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 D ++Q + Y +DFKE+V ISA S L ++ + ++ + P + I ++ Sbjct: 127 HPDQLLSQIDDYR-KQMDFKEVVPISALQGNNVSHLVDILSENLEEGFQYFPADQITDH 184 Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKST +N ++G + ++ TR+ + + I DT G+ KP Sbjct: 8 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDQEQIVFIDTPGIHKPK 67 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +L V+ + ++R +T + ++ A K D I++ + VVL +NK D Sbjct: 68 ---TALGDFMVESAYSTLREVDTVLFMVSADENRGKGDDMIMERLKVAKVPVVLVINKID 124 Query: 326 MV 327 V Sbjct: 125 KV 126 >gi|29655207|ref|NP_820899.1| tRNA modification GTPase TrmE [Coxiella burnetii RSA 493] gi|209363710|ref|YP_001423624.2| tRNA modification GTPase TrmE [Coxiella burnetii Dugway 5J108-111] gi|29542479|gb|AAO91413.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase [Coxiella burnetii RSA 493] gi|207081643|gb|ABS78334.2| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase [Coxiella burnetii Dugway 5J108-111] Length = 473 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 41/121 (33%), Positives = 70/121 (57%), Gaps = 3/121 (2%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+ I G PNVGKS+L N L ++ A+V + G TRD + I+G+ ++VDTAG+ Sbjct: 239 TVVIAGEPNVGKSSLLNLLSGQETAIVTDIAGTTRDIIRESIHIDGLPIHVVDTAGLRLT 298 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKN--IPIIIVSNKM 121 ++ + K+ +T+ A+ +A L+L +ID+ + I + + + IP +IV NK+ Sbjct: 299 EDV-VEKEGVRRTQKAVQQADLLLLMIDASKPTEDFKKIIAQWFSENDNKIPTLIVENKI 357 Query: 122 D 122 D Sbjct: 358 D 358 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 61/246 (24%), Positives = 113/246 (45%), Gaps = 35/246 (14%) Query: 114 IIIVSNKMDTRIAQRNFYEIYSLDFKEIVE--------ISAEHDLGTSELHSVIFKIFKQ 165 +I S++ R A R+ +S ++V+ I A D E+ + + K+ Sbjct: 153 LINASSEQAARSAMRSLQGEFSKRIHQLVDALIQLRMYIEASIDFPEEEIDFLADERIKE 212 Query: 166 KYPN--HPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRL 223 N H ++ IE + +E IT + + G PNVGKS+L+N L Sbjct: 213 TLENLTHQVQEIEKTAKQGALLREGIT---------------VVIAGEPNVGKSSLLNLL 257 Query: 224 LGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITES-LEQKTVKKSMQS 282 G + +G TRD + S + PI + DTAG+ R+TE +E++ V+++ ++ Sbjct: 258 SGQETAIVTDIAGTTRDIIRESIHIDGLPIHVVDTAGL----RLTEDVVEKEGVRRTQKA 313 Query: 283 VRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAI 342 V+ + ++++DA+ P E +I+ F+ + L +V +K++L+ + K Sbjct: 314 VQQADLLLLMIDASKPTEDFK-KIIAQWFSENDNKIPTL----IVENKIDLIGEAPRKEN 368 Query: 343 KNLPQI 348 K P I Sbjct: 369 KEYPHI 374 >gi|227510288|ref|ZP_03940337.1| GTP-binding protein Era [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227524439|ref|ZP_03954488.1| GTP-binding protein Era [Lactobacillus hilgardii ATCC 8290] gi|227088398|gb|EEI23710.1| GTP-binding protein Era [Lactobacillus hilgardii ATCC 8290] gi|227189940|gb|EEI70007.1| GTP-binding protein Era [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 300 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 53/172 (30%), Positives = 85/172 (49%), Gaps = 11/172 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST NR+V +K+A++ + TR+++ G + +DT GI + Sbjct: 11 VAIVGRPNVGKSTFLNRVVGQKIAIMSDKAQTTRNKIQGVYTTDEAQVVFIDTPGIHKPQ 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N + M D A+ E +LF++++ D+ I L+ + PI ++ NK+D Sbjct: 71 N-KLGDFMMDSALSALKEVDAVLFMVNATERRGAGDNFIIDRLKDVHKPIYLLINKID-E 128 Query: 125 IAQRNFYEIY-----SLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHP 171 I + I +L FKE+ ISA EL + + K + PN P Sbjct: 129 ITPDDVMAIIEQYKNALSFKEVFPISALQGNNVPELLTSLIK----ELPNGP 176 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/123 (25%), Positives = 62/123 (50%), Gaps = 3/123 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VGRPNVGKST +NR++G + ++ TR+ + + + DT G+ KP Sbjct: 11 VAIVGRPNVGKSTFLNRVVGQKIAIMSDKAQTTRNKIQGVYTTDEAQVVFIDTPGIHKPQ 70 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + ++ +++ + + +++AT D I+D + + + L +NK D Sbjct: 71 N---KLGDFMMDSALSALKEVDAVLFMVNATERRGAGDNFIIDRLKDVHKPIYLLINKID 127 Query: 326 MVS 328 ++ Sbjct: 128 EIT 130 >gi|126734408|ref|ZP_01750155.1| tRNA modification GTPase [Roseobacter sp. CCS2] gi|126717274|gb|EBA14138.1| tRNA modification GTPase [Roseobacter sp. CCS2] Length = 426 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 61/118 (51%), Gaps = 7/118 (5%) Query: 191 SEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKN 250 ++G + + +A++G PNVGKSTL+NRL G + +T +G TRD + + + Sbjct: 199 ADGVRVAERVRDGFEVAIIGAPNVGKSTLLNRLAGRDVAITSEVAGTTRDVIEVQMDLDG 258 Query: 251 HPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLL----DATIPFEKQDL 304 P+ + DTAG+R+ + E L V ++++ + I LL D + P DL Sbjct: 259 LPVTLLDTAGVRETDDVVEGL---GVARALERAERADFRIHLLMAPNDTSAPSGPDDL 313 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/102 (34%), Positives = 58/102 (56%), Gaps = 5/102 (4%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + +AI+GAPNVGKSTL NRL + +A+ G TRD + Q ++G+ ++DTAG+ + Sbjct: 212 FEVAIIGAPNVGKSTLLNRLAGRDVAITSEVAGTTRDVIEVQMDLDGLPVTLLDTAGVRE 271 Query: 63 GKNC----SIAKQMNDQTELAINEAHLILFLIDSKAGITPYD 100 + +A+ + ++ E A HL++ D+ A P D Sbjct: 272 TDDVVEGLGVARAL-ERAERADFRIHLLMAPNDTSAPSGPDD 312 >gi|332358725|gb|EGJ36548.1| GTP-binding protein Era [Streptococcus sanguinis SK355] Length = 299 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 49/179 (27%), Positives = 89/179 (49%), Gaps = 7/179 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKST N ++ +K+A++ + TR+++ G + +DT GI K Sbjct: 8 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM--- 121 ++ M + + E +LF++ + D I L+ +P+I+V NK+ Sbjct: 68 -TALGDFMVEAAYSTLREVDTVLFMVPADEPRGKGDDMIIERLKAAKVPVILVVNKIDKV 126 Query: 122 --DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 D +AQ + + +DFKEIV ISA S L ++ + ++ + P + I ++ Sbjct: 127 HPDQLLAQIDDFR-QQMDFKEIVPISALQGNNVSRLVDILSENLEEGFQYFPEDQITDH 184 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKST +N ++G + ++ TR+ + + I DT G+ KP Sbjct: 8 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +L V+ + ++R +T + ++ A P K D I++ + V+L +NK D Sbjct: 68 ---TALGDFMVEAAYSTLREVDTVLFMVPADEPRGKGDDMIIERLKAAKVPVILVVNKID 124 Query: 326 MV 327 V Sbjct: 125 KV 126 >gi|303231481|ref|ZP_07318211.1| GTP-binding protein Era [Veillonella atypica ACS-049-V-Sch6] gi|302513824|gb|EFL55836.1| GTP-binding protein Era [Veillonella atypica ACS-049-V-Sch6] Length = 299 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 50/178 (28%), Positives = 88/178 (49%), Gaps = 5/178 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKST+ N L+ K+A+V + TR+R+ +DT G+ K Sbjct: 12 VAVVGRPNVGKSTMINALIGDKIAIVSDKAQTTRNRIICVYTDEEKQIVFMDTPGVHKPK 71 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + + M D ++ E +LF++ P D+ I L++ +P+ +V NK+DT Sbjct: 72 H-KLGEFMVDAAIESLKETEAVLFVVAGNEKRGPGDNFIIEQLKRVKVPVFLVVNKIDTL 130 Query: 125 IAQRNFYEIYSLD----FKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 ++ I S F ++ ISA++ SEL +V+ + + P +MI + Sbjct: 131 QKEQVLEAIVSYQDAYPFAGVIPISAKNKENLSELLNVLGEHLPEGPQYFPEDMITDQ 188 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 3/120 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +AVVGRPNVGKST+IN L+G + ++ TR+ + + + I DT G+ KP Sbjct: 12 VAVVGRPNVGKSTMINALIGDKIAIVSDKAQTTRNRIICVYTDEEKQIVFMDTPGVHKPK 71 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + V +++S++ E + ++ D I++ + V L +NK D Sbjct: 72 H---KLGEFMVDAAIESLKETEAVLFVVAGNEKRGPGDNFIIEQLKRVKVPVFLVVNKID 128 >gi|296504794|ref|YP_003666494.1| GTP-binding protein Era [Bacillus thuringiensis BMB171] gi|296325846|gb|ADH08774.1| GTP-binding protein Era [Bacillus thuringiensis BMB171] Length = 301 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 77/147 (52%), Gaps = 7/147 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 ++I+G PNVGKST NR++ +K+A++ + P TR+++ G N +DT GI K Sbjct: 11 VSIIGRPNVGKSTFLNRIIGQKIAIMSDKPQTTRNKIQGVYTENDAQVIFIDTPGIHKPK 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + M + + E ++LF++++ G + I L++ P+ +V NK+D + Sbjct: 71 H-KLGDFMVKMAQTTLKEVDIVLFMVNAVEGFGRGEEFIIEKLKETKQPVFLVINKID-Q 128 Query: 125 IAQRNFYEIYSL-----DFKEIVEISA 146 + E+ +F EIV ISA Sbjct: 129 LHPEQLLELIDQYRKLHEFAEIVPISA 155 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 31/122 (25%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 ++++GRPNVGKST +NR++G + + TR+ + + + + DT G+ KP Sbjct: 11 VSIIGRPNVGKSTFLNRIIGQKIAIMSDKPQTTRNKIQGVYTENDAQVIFIDTPGIHKPK 70 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L VK + +++ + + +++A F + + I++ + T V L +NK D Sbjct: 71 H---KLGDFMVKMAQTTLKEVDIVLFMVNAVEGFGRGEEFIIEKLKETKQPVFLVINKID 127 Query: 326 MV 327 + Sbjct: 128 QL 129 >gi|107024092|ref|YP_622419.1| tRNA modification GTPase TrmE [Burkholderia cenocepacia AU 1054] gi|116691178|ref|YP_836801.1| tRNA modification GTPase TrmE [Burkholderia cenocepacia HI2424] gi|123371157|sp|Q1BSF9|MNME_BURCA RecName: Full=tRNA modification GTPase mnmE gi|205829125|sp|A0KBN1|MNME_BURCH RecName: Full=tRNA modification GTPase mnmE gi|105894281|gb|ABF77446.1| tRNA modification GTPase trmE [Burkholderia cenocepacia AU 1054] gi|116649267|gb|ABK09908.1| tRNA modification GTPase trmE [Burkholderia cenocepacia HI2424] Length = 464 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 50/188 (26%), Positives = 87/188 (46%), Gaps = 14/188 (7%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + L + + G+PNVGKS+L+N L G + +G TRD V+ + + P+ I DTA Sbjct: 223 LREGLSVVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTA 282 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R+ + +E+ + ++ + + + LLD+ D I + F G VV Sbjct: 283 GLRETE---DEVERIGIARTWSEIERADVVLHLLDSRTGMTADDETIA-ARFPAGVPVVR 338 Query: 320 ALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWK 379 LNK D+ +++ GD+ +S + G+G+D L +L I W+ Sbjct: 339 VLNKTDLTG---------VPACVEHPAAEGDLTEVHLSAKRGDGIDMLRAELLRIAG-WQ 388 Query: 380 TRITTSYL 387 YL Sbjct: 389 AGAEGVYL 396 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 39/123 (31%), Positives = 68/123 (55%), Gaps = 10/123 (8%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 ++ + G PNVGKS+L N L ++A+V G TRD++ + G+ +I+DTAG+ + Sbjct: 228 SVVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRET 287 Query: 64 KN----CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 ++ IA+ ++ I A ++L L+DS+ G+T D I + +P++ V N Sbjct: 288 EDEVERIGIARTWSE-----IERADVVLHLLDSRTGMTADDETIAARF-PAGVPVVRVLN 341 Query: 120 KMD 122 K D Sbjct: 342 KTD 344 >gi|241665032|ref|YP_002983392.1| tRNA modification GTPase TrmE [Ralstonia pickettii 12D] gi|240867059|gb|ACS64720.1| tRNA modification GTPase TrmE [Ralstonia pickettii 12D] Length = 481 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 43/125 (34%), Positives = 71/125 (56%), Gaps = 8/125 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + + G PNVGKS+L N L ++A+V G TRD++ I G+ NIVDTAG+ D + Sbjct: 241 VVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDKVQQTIQIEGIPLNIVDTAGLRDTE 300 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDS----KAGITPYDHAITSFLRK---KNIPIIIV 117 + + + ++T AI A ++L L+D+ G++P D AI + + + +P + V Sbjct: 301 D-EVERIGIERTWAAIARADVVLHLLDATDYRAKGLSPEDTAIDARIAEHVPAGVPTLRV 359 Query: 118 SNKMD 122 NK+D Sbjct: 360 INKID 364 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 30/93 (32%), Positives = 52/93 (55%), Gaps = 3/93 (3%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 L + + G+PNVGKS+L+N L G + +G TRD V + + P+ I DTAG+R Sbjct: 239 LHVVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDKVQQTIQIEGIPLNIVDTAGLRD 298 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDAT 296 + +E+ ++++ ++ + + LLDAT Sbjct: 299 ---TEDEVERIGIERTWAAIARADVVLHLLDAT 328 >gi|330818728|ref|YP_004362433.1| tRNA modification GTPase TrmE [Burkholderia gladioli BSR3] gi|327371121|gb|AEA62477.1| tRNA modification GTPase TrmE [Burkholderia gladioli BSR3] Length = 468 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 49/190 (25%), Positives = 90/190 (47%), Gaps = 14/190 (7%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + + + + G+PNVGKS+L+N L G + +G TRD V+ + + P+ I DTA Sbjct: 223 LREGMSVVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTA 282 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R+ + +E+ + ++ + + + LLDA +D R + F G VV Sbjct: 283 GLRETE---DEVEKIGIARTWGEIERADVVLHLLDAQTGLGTED-RAIAERFPAGVPVVR 338 Query: 320 ALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINT--ISGRTGEGLDDLMVSVLEINKL 377 NK D+ + ++ A G++ + +S + G+G+D L +L I Sbjct: 339 VFNKTDLSGEAASVTHPGSGAA-------GEVDLTELRLSAKQGDGIDLLRAELLRIAG- 390 Query: 378 WKTRITTSYL 387 W+ + YL Sbjct: 391 WQAGAESVYL 400 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 66/119 (55%), Gaps = 2/119 (1%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 ++ + G PNVGKS+L N L ++A+V G TRD++ + G+ +I+DTAG+ + Sbjct: 228 SVVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRET 287 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 ++ + K +T I A ++L L+D++ G+ D AI +P++ V NK D Sbjct: 288 ED-EVEKIGIARTWGEIERADVVLHLLDAQTGLGTEDRAIAERF-PAGVPVVRVFNKTD 344 >gi|298346303|ref|YP_003718990.1| GTP-binding protein Era family protein [Mobiluncus curtisii ATCC 43063] gi|298236364|gb|ADI67496.1| GTP-binding protein Era family protein [Mobiluncus curtisii ATCC 43063] Length = 350 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 56/173 (32%), Positives = 89/173 (51%), Gaps = 14/173 (8%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFN--IVDTAGIADG 63 A++G PNVGKSTL N +V +K+A+ + P TR G I++ F +VDT GI Sbjct: 60 AVIGRPNVGKSTLINAMVGRKIAITSDRPETTRRVARG--IVHRPDFQLILVDTPGIHRP 117 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAIT-SFLRKKNIPIIIVSNKMD 122 + + +++ND + A +E + +F + + I P D I + L+ + P I V K D Sbjct: 118 RTL-LGQRLNDMVDDAFSEVDVAVFCVPADQPIGPGDRRIVETQLKTAHFPAIAVVTKTD 176 Query: 123 T----RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHP 171 +IA++ DF EIV ISA GT ++ ++I + Q+ P P Sbjct: 177 AASREQIAEQLLAVSQLHDFAEIVPISAHQ--GT-QVQTLI-DLLGQRLPLSP 225 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 44/163 (26%), Positives = 72/163 (44%), Gaps = 6/163 (3%) Query: 207 AVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSR 266 AV+GRPNVGKSTLIN ++G +T + TR + + + + DT G+ +P Sbjct: 60 AVIGRPNVGKSTLINAMVGRKIAITSDRPETTRRVARGIVHRPDFQLILVDTPGIHRPRT 119 Query: 267 ITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLA-LNKWD 325 + V + V + + + A P D RIV++ T H +A + K D Sbjct: 120 LLGQRLNDMVDDAFSEV---DVAVFCVPADQPIGPGDRRIVETQLKTAHFPAIAVVTKTD 176 Query: 326 MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLM 368 S + Q L + + +I + I+ G + L DL+ Sbjct: 177 AASREQIAEQLLAVSQLHDFAEI--VPISAHQGTQVQTLIDLL 217 >gi|195978293|ref|YP_002123537.1| tRNA modification GTPase TrmE [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195974998|gb|ACG62524.1| tRNA modification GTPase TrmE [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 458 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 40/129 (31%), Positives = 79/129 (61%), Gaps = 5/129 (3%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L A++GRPNVGKS+L+N LL ++ + +G TRD + N K P+++ D Sbjct: 219 KILREGLSTAIIGRPNVGKSSLLNTLLREDKAIVTDIAGTTRDVIEEYVNIKGIPLKLVD 278 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ + +EQ V++S ++++ + +++L+A+ +QD ++ ++ + + Sbjct: 279 TAGIRETDDL---VEQIGVERSKKALQEADLVLLVLNASEKLTEQDKALL-ALSQDSNRI 334 Query: 318 VLALNKWDM 326 +L LNK D+ Sbjct: 335 IL-LNKTDL 342 Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 40/128 (31%), Positives = 73/128 (57%), Gaps = 3/128 (2%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+++ A+V + G TRD + I G+ +VDTAGI + + Sbjct: 228 AIIGRPNVGKSSLLNTLLREDKAIVTDIAGTTRDVIEEYVNIKGIPLKLVDTAGIRETDD 287 Query: 66 CSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +Q+ ++++ A+ EA L+L ++++ +T D A+ + + N I++ +D Sbjct: 288 --LVEQIGVERSKKALQEADLVLLVLNASEKLTEQDKALLALSQDSNRIILLNKTDLDQV 345 Query: 125 IAQRNFYE 132 I + E Sbjct: 346 IEKDQLPE 353 >gi|326562321|gb|EGE12647.1| tRNA modification GTPase TrmE [Moraxella catarrhalis 103P14B1] gi|326575525|gb|EGE25450.1| tRNA modification GTPase TrmE [Moraxella catarrhalis 101P30B1] Length = 466 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 49/175 (28%), Positives = 87/175 (49%), Gaps = 23/175 (13%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 + + + G+PN GKS+L+NRL G R + +G TRD++ + + + DTAG+RK Sbjct: 221 VHVVLAGKPNAGKSSLLNRLSGTERAIVTEIAGTTRDTLEETLILNGLTVHLTDTAGLRK 280 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVF------NTG--- 314 + +E+ +K++ ++ + +++ D T E L + D +F + G Sbjct: 281 TD---DHVEKIGIKRAFDAIHQADVLMMVYDVTT--ETDPLALADQLFCEDVTEDVGDII 335 Query: 315 -HAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLM 368 ++L NK D++ K L TK+ L +Y +S TGEGLD+L+ Sbjct: 336 RQKLILVANKSDLLVSKPVLQVSCETKSAPKL-----VY---VSCETGEGLDELI 382 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 53/191 (27%), Positives = 86/191 (45%), Gaps = 40/191 (20%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + + G PN GKS+L NRL + A+V G TRD L I+NG+ ++ DTAG+ Sbjct: 223 VVLAGKPNAGKSSLLNRLSGTERAIVTEIAGTTRDTLEETLILNGLTVHLTDTAGL---- 278 Query: 65 NCSIAKQMNDQTEL--------AINEAHLILFLIDSKAGITPYDHA-----------ITS 105 ++ +D E AI++A +++ + D P A + Sbjct: 279 -----RKTDDHVEKIGIKRAFDAIHQADVLMMVYDVTTETDPLALADQLFCEDVTEDVGD 333 Query: 106 FLRKKNIPIIIVSNKMDTRIAQRNFYEIYSLDFK---EIVEISAEHDLGTSELHSVIFKI 162 +R+K +I+V+NK D +++ S + K ++V +S E G EL +I Sbjct: 334 IIRQK---LILVANKSDLLVSKPVLQ--VSCETKSAPKLVYVSCETGEGLDEL----IEI 384 Query: 163 FKQKYPNHPLE 173 QK HP E Sbjct: 385 LTQKVGFHPPE 395 >gi|167587873|ref|ZP_02380261.1| tRNA modification GTPase TrmE [Burkholderia ubonensis Bu] Length = 464 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 39/123 (31%), Positives = 69/123 (56%), Gaps = 10/123 (8%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 ++ + G PNVGKS+L N L ++A+V G TRD++ + G+ +I+DTAG+ + Sbjct: 228 SVVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRET 287 Query: 64 KN----CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 ++ IA+ ++ I A ++L L+D++ G+T D AI + +P++ V N Sbjct: 288 EDEVERIGIARTWSE-----IERADVVLHLLDARGGMTADDEAIAARF-PAGVPVVRVLN 341 Query: 120 KMD 122 K D Sbjct: 342 KTD 344 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 51/188 (27%), Positives = 87/188 (46%), Gaps = 14/188 (7%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + L + + G+PNVGKS+L+N L G + +G TRD V+ + + P+ I DTA Sbjct: 223 LREGLSVVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTA 282 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R+ + +E+ + ++ + + + LLDA D I + F G VV Sbjct: 283 GLRETE---DEVERIGIARTWSEIERADVVLHLLDARGGMTADDEAIA-ARFPAGVPVVR 338 Query: 320 ALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWK 379 LNK D+ ++ + GD+ +S + G+G+D L +L I W+ Sbjct: 339 VLNKTDLTG---------APASVAHPAAQGDLTEVRLSAKRGDGIDLLRGELLRIAG-WQ 388 Query: 380 TRITTSYL 387 YL Sbjct: 389 AGAEGVYL 396 >gi|30022378|ref|NP_834009.1| GTP-binding protein Era [Bacillus cereus ATCC 14579] gi|218232187|ref|YP_002369107.1| GTP-binding protein Era [Bacillus cereus B4264] gi|29897936|gb|AAP11210.1| GTP-binding protein [Bacillus cereus ATCC 14579] gi|218160144|gb|ACK60136.1| GTP-binding protein Era [Bacillus cereus B4264] gi|326942082|gb|AEA17978.1| GTP-binding protein Era [Bacillus thuringiensis serovar chinensis CT-43] Length = 301 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 77/147 (52%), Gaps = 7/147 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 ++I+G PNVGKST NR++ +K+A++ + P TR+++ G N +DT GI K Sbjct: 11 VSIIGRPNVGKSTFLNRIIGQKIAIMSDKPQTTRNKIQGVYTENDAQVIFIDTPGIHKPK 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + M + + E ++LF++++ G + I L++ P+ +V NK+D + Sbjct: 71 H-KLGDFMVKMAQTTLKEVDIVLFMVNAVEGFGRGEEFIIEKLKETKQPVFLVINKID-Q 128 Query: 125 IAQRNFYEIYSL-----DFKEIVEISA 146 + E+ +F EIV ISA Sbjct: 129 LHPEQLLELIDQYRKLHEFAEIVPISA 155 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 31/122 (25%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 ++++GRPNVGKST +NR++G + + TR+ + + + + DT G+ KP Sbjct: 11 VSIIGRPNVGKSTFLNRIIGQKIAIMSDKPQTTRNKIQGVYTENDAQVIFIDTPGIHKPK 70 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L VK + +++ + + +++A F + + I++ + T V L +NK D Sbjct: 71 H---KLGDFMVKMAQTTLKEVDIVLFMVNAVEGFGRGEEFIIEKLKETKQPVFLVINKID 127 Query: 326 MV 327 + Sbjct: 128 QL 129 >gi|325983265|ref|YP_004295667.1| tRNA modification GTPase TrmE [Nitrosomonas sp. AL212] gi|325532784|gb|ADZ27505.1| tRNA modification GTPase TrmE [Nitrosomonas sp. AL212] Length = 464 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 53/171 (30%), Positives = 90/171 (52%), Gaps = 6/171 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 I + GAPNVGKS+L N+LV++ A+V PG TRD ++ + G+ +I+DTAG+ + Sbjct: 231 IVLAGAPNVGKSSLLNQLVEEDAAIVTEIPGTTRDTIHRTITLGGMPIHIIDTAGLRETG 290 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + ++ ++T AI A+L+L L+DS I ++ + P I V NK+D R Sbjct: 291 DI-VEQKGIERTLAAIKCANLVLRLLDSSQHQPAAPDPIKQYI-PDDKPQITVFNKIDLR 348 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 ++ + + I+ +SA+ G L I + ++ NH E I Sbjct: 349 ---NESPKMEADEHNSIIHLSAKTGAGIELLRQKILHLAGWQF-NHAGEGI 395 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 31/97 (31%), Positives = 58/97 (59%), Gaps = 3/97 (3%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + +RI + G PNVGKS+L+N+L+ + + G TRD++ + PI I DTA Sbjct: 225 LQEGIRIVLAGAPNVGKSSLLNQLVEEDAAIVTEIPGTTRDTIHRTITLGGMPIHIIDTA 284 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDAT 296 G+R+ I +EQK +++++ +++ + LLD++ Sbjct: 285 GLRETGDI---VEQKGIERTLAAIKCANLVLRLLDSS 318 >gi|303228934|ref|ZP_07315744.1| GTP-binding protein Era [Veillonella atypica ACS-134-V-Col7a] gi|302516348|gb|EFL58280.1| GTP-binding protein Era [Veillonella atypica ACS-134-V-Col7a] Length = 299 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 50/178 (28%), Positives = 88/178 (49%), Gaps = 5/178 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKST+ N L+ K+A+V + TR+R+ +DT G+ K Sbjct: 12 VAVVGRPNVGKSTMINALIGDKIAIVSDKAQTTRNRIICVYTDEEKQIVFMDTPGVHKPK 71 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + + M D ++ E +LF++ P D+ I L++ +P+ +V NK+DT Sbjct: 72 H-KLGEFMVDAAIESLKETEAVLFVVAGNEKRGPGDNFIIEQLKRVKVPVFLVVNKIDTL 130 Query: 125 IAQRNFYEIYSLD----FKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 ++ I S F ++ ISA++ SEL +V+ + + P +MI + Sbjct: 131 QKEQVLEAIVSYQDAYPFAGVIPISAKNKENLSELLNVLGEHLPEGPQYFPEDMITDQ 188 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 3/120 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +AVVGRPNVGKST+IN L+G + ++ TR+ + + + I DT G+ KP Sbjct: 12 VAVVGRPNVGKSTMINALIGDKIAIVSDKAQTTRNRIICVYTDEEKQIVFMDTPGVHKPK 71 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + V +++S++ E + ++ D I++ + V L +NK D Sbjct: 72 H---KLGEFMVDAAIESLKETEAVLFVVAGNEKRGPGDNFIIEQLKRVKVPVFLVVNKID 128 >gi|225868377|ref|YP_002744325.1| tRNA modification GTPase TrmE [Streptococcus equi subsp. zooepidemicus] gi|225701653|emb|CAW98957.1| tRNA modification GTPase TrmE [Streptococcus equi subsp. zooepidemicus] Length = 458 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 40/129 (31%), Positives = 79/129 (61%), Gaps = 5/129 (3%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L A++GRPNVGKS+L+N LL ++ + +G TRD + N K P+++ D Sbjct: 219 KILREGLSTAIIGRPNVGKSSLLNTLLREDKAIVTDIAGTTRDVIEEYVNIKGIPLKLVD 278 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ + +EQ V++S ++++ + +++L+A+ +QD ++ ++ + + Sbjct: 279 TAGIRETDDL---VEQIGVERSKKALQEADLVLLVLNASEKLTEQDKALL-ALSQDSNRI 334 Query: 318 VLALNKWDM 326 +L LNK D+ Sbjct: 335 IL-LNKTDL 342 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 41/118 (34%), Positives = 71/118 (60%), Gaps = 5/118 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+++ A+V + G TRD + I G+ +VDTAGI + + Sbjct: 228 AIIGRPNVGKSSLLNTLLREDKAIVTDIAGTTRDVIEEYVNIKGIPLKLVDTAGIRETDD 287 Query: 66 CSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + +Q+ ++++ A+ EA L+L ++++ +T D A+ + + N II+ NK D Sbjct: 288 --LVEQIGVERSKKALQEADLVLLVLNASEKLTEQDKALLALSQDSN--RIILLNKTD 341 >gi|193216965|ref|YP_002000207.1| tRNA modification GTPase TrmE [Mycoplasma arthritidis 158L3-1] gi|193002288|gb|ACF07503.1| tRNA modification GTPase TrmE [Mycoplasma arthritidis 158L3-1] Length = 442 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 43/110 (39%), Positives = 59/110 (53%), Gaps = 9/110 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PN GKS+L N L++K A+V + PG TRD + + ING++F I+DTAGI Sbjct: 219 IAIVGKPNTGKSSLLNALIQKDKAIVTDIPGTTRDLVEAEFEINGILFRIIDTAGIRKTD 278 Query: 65 N----CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKK 110 N I K + AI+ A +I+ L D + D I + K Sbjct: 279 NEIESIGIKKSLE-----AIDNAKVIIHLHDPLQKDSTEDEQIKKLAKDK 323 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 36/113 (31%), Positives = 59/113 (52%), Gaps = 6/113 (5%) Query: 189 ITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNW 248 + E + +I + + IA+VG+PN GKS+L+N L+ ++ + G TRD V + Sbjct: 202 VVVEKSENASDIYRGINIAIVGKPNTGKSSLLNALIQKDKAIVTDIPGTTRDLVEAEFEI 261 Query: 249 KNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 I DTAG+RK ES+ +KKS++++ + I L D P +K Sbjct: 262 NGILFRIIDTAGIRKTDNEIESI---GIKKSLEAIDNAKVIIHLHD---PLQK 308 >gi|148377321|ref|YP_001256197.1| tRNA modification GTPase TrmE [Mycoplasma agalactiae PG2] gi|205415799|sp|A5IXJ1|MNME_MYCAP RecName: Full=tRNA modification GTPase mnmE gi|148291367|emb|CAL58750.1| TRNA modification GTPase (TrmE) [Mycoplasma agalactiae PG2] Length = 445 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 50/178 (28%), Positives = 88/178 (49%), Gaps = 16/178 (8%) Query: 190 TSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWK 249 T E + + I + ++IA++G+PNVGKS+++N +L ++ + +G TRD V W +K Sbjct: 205 TIELSQTSRMIFEGIKIAILGKPNVGKSSILNAILEEDKAIVTDIAGTTRDIVEAMWQYK 264 Query: 250 NHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDS 309 + DTAG+R E +E+ + KS + + + + + D + + D +I + Sbjct: 265 GLLFKFIDTAGIRDTK---EKIEKIGIDKSFEQIEKADVVLHIYDPSQNDNEFDSQIKNK 321 Query: 310 VFNTGHAVVLALNKWDM----------VSDKLNLLQDLRTKAI---KNLPQIGDIYIN 354 + V +NK D+ VS KLN L L+ K + KN+ D Y+N Sbjct: 322 AHSLNKIYVPVINKKDLLETTNDEFLYVSAKLNDLDPLKEKLVSVFKNVDLNNDQYVN 379 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/118 (33%), Positives = 62/118 (52%), Gaps = 1/118 (0%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAI+G PNVGKS++ N ++++ A+V + G TRD + G++F +DTAGI D K Sbjct: 221 IAILGKPNVGKSSILNAILEEDKAIVTDIAGTTRDIVEAMWQYKGLLFKFIDTAGIRDTK 280 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 I K D++ I +A ++L + D +D I + N + V NK D Sbjct: 281 E-KIEKIGIDKSFEQIEKADVVLHIYDPSQNDNEFDSQIKNKAHSLNKIYVPVINKKD 337 >gi|50914157|ref|YP_060129.1| tRNA modification GTPase TrmE [Streptococcus pyogenes MGAS10394] gi|73919891|sp|Q5XCB7|MNME_STRP6 RecName: Full=tRNA modification GTPase mnmE gi|50903231|gb|AAT86946.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase [Streptococcus pyogenes MGAS10394] Length = 458 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 45/144 (31%), Positives = 84/144 (58%), Gaps = 6/144 (4%) Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSV 242 +S EN+ K K + + L A++GRPNVGKS+L+N LL ++ + +G TRD + Sbjct: 205 QSLLENLLRTAKRG-KILREGLSTAIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVI 263 Query: 243 SISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQ 302 N K P+++ DTAG+R+ + +EQ V++S ++++ + +++L+A+ Q Sbjct: 264 EEYVNIKGVPLKLVDTAGIRETDDL---VEQIGVERSKKALQESDLVLLVLNASEKLTDQ 320 Query: 303 DLRIVDSVFNTGHAVVLALNKWDM 326 D R + ++ + ++L LNK D+ Sbjct: 321 D-RALLNLSQDSNRIIL-LNKTDL 342 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 41/118 (34%), Positives = 71/118 (60%), Gaps = 5/118 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+++ A+V + G TRD + I GV +VDTAGI + + Sbjct: 228 AIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNIKGVPLKLVDTAGIRETDD 287 Query: 66 CSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + +Q+ ++++ A+ E+ L+L ++++ +T D A+ + + N II+ NK D Sbjct: 288 --LVEQIGVERSKKALQESDLVLLVLNASEKLTDQDRALLNLSQDSN--RIILLNKTD 341 >gi|225870695|ref|YP_002746642.1| tRNA modification GTPase TrmE [Streptococcus equi subsp. equi 4047] gi|225700099|emb|CAW94188.1| tRNA modification GTPase TrmE [Streptococcus equi subsp. equi 4047] Length = 458 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 40/129 (31%), Positives = 79/129 (61%), Gaps = 5/129 (3%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L A++GRPNVGKS+L+N LL ++ + +G TRD + N K P+++ D Sbjct: 219 KILREGLSTAIIGRPNVGKSSLLNTLLREDKAIVTDIAGTTRDVIEEYVNIKGIPLKLVD 278 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ + +EQ V++S ++++ + +++L+A+ +QD ++ ++ + + Sbjct: 279 TAGIRETDDL---VEQIGVERSKKALQEADLVLLVLNASEKLTEQDKALL-ALSQDSNRI 334 Query: 318 VLALNKWDM 326 +L LNK D+ Sbjct: 335 IL-LNKTDL 342 Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 41/118 (34%), Positives = 71/118 (60%), Gaps = 5/118 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+++ A+V + G TRD + I G+ +VDTAGI + + Sbjct: 228 AIIGRPNVGKSSLLNTLLREDKAIVTDIAGTTRDVIEEYVNIKGIPLKLVDTAGIRETDD 287 Query: 66 CSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + +Q+ ++++ A+ EA L+L ++++ +T D A+ + + N II+ NK D Sbjct: 288 --LVEQIGVERSKKALQEADLVLLVLNASEKLTEQDKALLALSQDSN--RIILLNKTD 341 >gi|161830089|ref|YP_001597738.1| tRNA modification GTPase TrmE [Coxiella burnetii RSA 331] gi|14195264|sp|P94612|MNME_COXBU RecName: Full=tRNA modification GTPase mnmE gi|189036199|sp|A9KBS9|MNME_COXBN RecName: Full=tRNA modification GTPase mnmE gi|189036200|sp|A9NBA7|MNME_COXBR RecName: Full=tRNA modification GTPase mnmE gi|1780759|emb|CAA71458.1| unnamed protein product [Coxiella burnetii] gi|161761956|gb|ABX77598.1| tRNA modification GTPase TrmE [Coxiella burnetii RSA 331] Length = 452 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 41/121 (33%), Positives = 70/121 (57%), Gaps = 3/121 (2%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+ I G PNVGKS+L N L ++ A+V + G TRD + I+G+ ++VDTAG+ Sbjct: 218 TVVIAGEPNVGKSSLLNLLSGQETAIVTDIAGTTRDIIRESIHIDGLPIHVVDTAGLRLT 277 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKN--IPIIIVSNKM 121 ++ + K+ +T+ A+ +A L+L +ID+ + I + + + IP +IV NK+ Sbjct: 278 EDV-VEKEGVRRTQKAVQQADLLLLMIDASKPTEDFKKIIAQWFSENDNKIPTLIVENKI 336 Query: 122 D 122 D Sbjct: 337 D 337 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 51/198 (25%), Positives = 93/198 (46%), Gaps = 30/198 (15%) Query: 114 IIIVSNKMDTRIAQRNFYEIYSLDFKEIVE--------ISAEHDLGTSELHSVIFKIFKQ 165 +I S++ R A R+ +S ++V+ I A D E+ + + K+ Sbjct: 132 LINASSEQAARSAMRSLQGEFSKRIHQLVDALIQLRMYIEASIDFPEEEIDFLADERIKE 191 Query: 166 KYPN--HPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRL 223 N H ++ IE + +E IT + + G PNVGKS+L+N L Sbjct: 192 TLENLTHQVQEIEKTAKQGALLREGIT---------------VVIAGEPNVGKSSLLNLL 236 Query: 224 LGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITES-LEQKTVKKSMQS 282 G + +G TRD + S + PI + DTAG+ R+TE +E++ V+++ ++ Sbjct: 237 SGQETAIVTDIAGTTRDIIRESIHIDGLPIHVVDTAGL----RLTEDVVEKEGVRRTQKA 292 Query: 283 VRTCETTIVLLDATIPFE 300 V+ + ++++DA+ P E Sbjct: 293 VQQADLLLLMIDASKPTE 310 >gi|116627505|ref|YP_820124.1| GTP-binding protein Era [Streptococcus thermophilus LMD-9] gi|116100782|gb|ABJ65928.1| GTPase [Streptococcus thermophilus LMD-9] gi|312278024|gb|ADQ62681.1| GTP-binding protein [Streptococcus thermophilus ND03] Length = 299 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 48/178 (26%), Positives = 87/178 (48%), Gaps = 5/178 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKST N ++ +K+A++ + TR+++ G + +DT GI K Sbjct: 8 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 ++ M + + E +LF++ + D I L++ +P+I+V NK+D Sbjct: 68 -TALGDFMVESAYSTLREVDTVLFMVPADEPRGKGDDMIIKRLKQAKVPVILVVNKIDKV 126 Query: 125 IAQRNFYEI----YSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 + +I +DFKEI+ ISA S L V+ ++ + P + I ++ Sbjct: 127 HPDQLLEQIDDFRKQMDFKEIIPISALQGNNVSHLVDVLSDNLEEGFQYFPSDQITDH 184 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKST +N ++G + ++ TR+ + + I DT G+ KP Sbjct: 8 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +L V+ + ++R +T + ++ A P K D I+ + V+L +NK D Sbjct: 68 T---ALGDFMVESAYSTLREVDTVLFMVPADEPRGKGDDMIIKRLKQAKVPVILVVNKID 124 Query: 326 MV 327 V Sbjct: 125 KV 126 >gi|326803486|ref|YP_004321304.1| ribosome biogenesis GTPase Era [Aerococcus urinae ACS-120-V-Col10a] gi|326650900|gb|AEA01083.1| ribosome biogenesis GTPase Era [Aerococcus urinae ACS-120-V-Col10a] Length = 303 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 40/118 (33%), Positives = 64/118 (54%), Gaps = 1/118 (0%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N ++ +K+A++ + TR++++ + V +DT GI K Sbjct: 12 VAIVGRPNVGKSTLLNHIIGQKVAIMSDKAQTTRNKIHAIYTTDEVQIVFIDTPGIHKPK 71 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + + + M A++E +IL L++S I P D I + N P I+ NK D Sbjct: 72 H-ELGEYMVKSAYSALDEVEVILMLVNSTEKIGPGDRFIMEKIAAYNTPKILAVNKTD 128 Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 84/165 (50%), Gaps = 12/165 (7%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VGRPNVGKSTL+N ++G + ++ TR+ + + I DT G+ KP Sbjct: 12 VAIVGRPNVGKSTLLNHIIGQKVAIMSDKAQTTRNKIHAIYTTDEVQIVFIDTPGIHKPK 71 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + VK + ++ E ++L+++T D I++ + +LA+NK D Sbjct: 72 H---ELGEYMVKSAYSALDEVEVILMLVNSTEKIGPGDRFIMEKIAAYNTPKILAVNKTD 128 Query: 326 MVSDKLNLLQDLRTKAIKNLPQIGDIY--INTISGRTGEGLDDLM 368 + DK +L ++++P DI+ I +S TG+ +D L+ Sbjct: 129 QL-DKEDL-----AAYLESIPN-KDIFDQIIPLSALTGDNVDQLL 166 >gi|325694805|gb|EGD36710.1| GTP-binding protein Era [Streptococcus sanguinis SK150] Length = 299 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 49/179 (27%), Positives = 89/179 (49%), Gaps = 7/179 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKST N ++ +K+A++ + TR+++ G + +DT GI K Sbjct: 8 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM--- 121 ++ M + + E +LF++ + D I L+ +P+I+V NK+ Sbjct: 68 -TALGDFMVEAAYSTLREVDTVLFMVPADEPRGKGDDMIIERLKAAKVPVILVVNKIDKV 126 Query: 122 --DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 D +AQ + + +DFKEIV ISA S L ++ + ++ + P + I ++ Sbjct: 127 HPDQLLAQIDDFR-QQMDFKEIVPISALQGNNVSHLVDILSENLEEGFQYFPEDQITDH 184 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKST +N ++G + ++ TR+ + + I DT G+ KP Sbjct: 8 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +L V+ + ++R +T + ++ A P K D I++ + V+L +NK D Sbjct: 68 T---ALGDFMVEAAYSTLREVDTVLFMVPADEPRGKGDDMIIERLKAAKVPVILVVNKID 124 Query: 326 MV 327 V Sbjct: 125 KV 126 >gi|320534204|ref|ZP_08034727.1| GTP-binding protein Era [Actinomyces sp. oral taxon 171 str. F0337] gi|320133581|gb|EFW26006.1| GTP-binding protein Era [Actinomyces sp. oral taxon 171 str. F0337] Length = 392 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 80/169 (47%), Gaps = 5/169 (2%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PN GKSTL N LV K+A+ P TR + G + +VDT G+ + Sbjct: 98 IVGRPNAGKSTLTNALVGAKIAITSGRPQTTRHNVRGVIHQDNAQIVLVDTPGLHRPRTL 157 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 + K++ND + + +++F + + I P D IT L + P++ V K DT Sbjct: 158 -LGKRLNDLVRETLTDVDVVVFCVPANEKIGPGDRFITRDLAELRTPVVAVVTKADTVTR 216 Query: 127 QRNFYEIYSL----DFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHP 171 + ++ ++ ++ +IV +SA+ + L V+ K P +P Sbjct: 217 EALAAQLLAVSELGEWADIVPVSAQRNEQIDVLKEVLLKYMPLSPPLYP 265 Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 32/57 (56%) Query: 208 VVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP 264 +VGRPN GKSTL N L+G +T + TR +V + N I + DT G+ +P Sbjct: 98 IVGRPNAGKSTLTNALVGAKIAITSGRPQTTRHNVRGVIHQDNAQIVLVDTPGLHRP 154 >gi|237740467|ref|ZP_04570948.1| GTP binding protein [Fusobacterium sp. 2_1_31] gi|229422484|gb|EEO37531.1| GTP binding protein [Fusobacterium sp. 2_1_31] Length = 297 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 70/125 (56%), Gaps = 4/125 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA+VGRPNVGKSTLIN+++ + ++G TRD++ N K++ DT G+ KP Sbjct: 6 IAIVGRPNVGKSTLINKMVAEKVAIVSDKAGTTRDNIKGILNVKDNQYIFIDTPGIHKPQ 65 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSV-FNTGHAVVLALNKW 324 + L + ++ ++ + + L+DA+ D+ ++D + N+ +L +NK Sbjct: 66 HL---LGEYMTNIAINILKDVDVILFLIDASKTIGTGDMFVMDRINENSNKPKILLVNKV 122 Query: 325 DMVSD 329 D++SD Sbjct: 123 DLISD 127 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 46/122 (37%), Positives = 70/122 (57%), Gaps = 8/122 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N++V +K+A+V + G TRD + G + + +DT GI + Sbjct: 6 IAIVGRPNVGKSTLINKMVAEKVAIVSDKAGTTRDNIKGILNVKDNQYIFIDTPGIHKPQ 65 Query: 65 NCSIAKQMNDQTELAIN---EAHLILFLIDSKAGITPYDHAITSFLRK-KNIPIIIVSNK 120 + + + M T +AIN + +ILFLID+ I D + + + N P I++ NK Sbjct: 66 HL-LGEYM---TNIAINILKDVDVILFLIDASKTIGTGDMFVMDRINENSNKPKILLVNK 121 Query: 121 MD 122 +D Sbjct: 122 VD 123 >gi|224498350|ref|ZP_03666699.1| tRNA modification GTPase TrmE [Listeria monocytogenes Finland 1988] Length = 457 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 39/132 (29%), Positives = 73/132 (55%), Gaps = 5/132 (3%) Query: 195 SSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIE 254 S K + + L A++GRPNVGKS+L+N+L+ + + +G TRD + N + P+ Sbjct: 211 SQGKILREGLATAIIGRPNVGKSSLLNQLIQEEKAIVTDIAGTTRDIIEEYVNVRGVPLR 270 Query: 255 IFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTG 314 + DTAG+R+ I E + V++S +++ + +++L+ +D + ++ G Sbjct: 271 LIDTAGIRETEDIVEKI---GVERSRKALADADFILLVLNQNEELTAEDEALFEAA--AG 325 Query: 315 HAVVLALNKWDM 326 H V+ LNK D+ Sbjct: 326 HNYVVVLNKTDL 337 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 45/158 (28%), Positives = 82/158 (51%), Gaps = 3/158 (1%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N+L++++ A+V + G TRD + + GV ++DTAGI + ++ Sbjct: 223 AIIGRPNVGKSSLLNQLIQEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAGIRETED 282 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 + K +++ A+ +A IL +++ +T D A+ N +++ ++T++ Sbjct: 283 I-VEKIGVERSRKALADADFILLVLNQNEELTAEDEALFEAAAGHNYVVVLNKTDLETKL 341 Query: 126 AQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 EI + IV S +D G L I +F Sbjct: 342 DIEKVREIAGEN--PIVATSLVNDEGLEALEEAIKTLF 377 >gi|206971303|ref|ZP_03232254.1| GTP-binding protein Era [Bacillus cereus AH1134] gi|206734075|gb|EDZ51246.1| GTP-binding protein Era [Bacillus cereus AH1134] Length = 301 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 77/147 (52%), Gaps = 7/147 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 ++I+G PNVGKST NR++ +K+A++ + P TR+++ G N +DT GI K Sbjct: 11 VSIIGRPNVGKSTFLNRIIGQKIAIMSDKPQTTRNKIQGVYTENDAQVIFIDTPGIHKPK 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + M + + E ++LF++++ G + I L++ P+ +V NK+D + Sbjct: 71 H-KLGDFMVKMAQTTLKEVDIVLFMVNAVEGFGRGEEFIIEKLKETKQPVFLVINKID-Q 128 Query: 125 IAQRNFYEIYSL-----DFKEIVEISA 146 + E+ +F EIV ISA Sbjct: 129 LHPEQLLELIDQYRKLHEFAEIVPISA 155 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 31/122 (25%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 ++++GRPNVGKST +NR++G + + TR+ + + + + DT G+ KP Sbjct: 11 VSIIGRPNVGKSTFLNRIIGQKIAIMSDKPQTTRNKIQGVYTENDAQVIFIDTPGIHKPK 70 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L VK + +++ + + +++A F + + I++ + T V L +NK D Sbjct: 71 H---KLGDFMVKMAQTTLKEVDIVLFMVNAVEGFGRGEEFIIEKLKETKQPVFLVINKID 127 Query: 326 MV 327 + Sbjct: 128 QL 129 >gi|50294530|ref|XP_449676.1| hypothetical protein [Candida glabrata CBS 138] gi|49528990|emb|CAG62652.1| unnamed protein product [Candida glabrata] Length = 487 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 38/134 (28%), Positives = 73/134 (54%), Gaps = 2/134 (1%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + + ++G PNVGKS+L+N++ + + G TRD VS N + + +FDTA Sbjct: 235 VENGINMTLLGAPNVGKSSLLNQIASDDISIVSDIPGTTRDIVSSIVNINGYKVNLFDTA 294 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R + T+ +E+ ++K+ + + + + I ++D T P L ++ S +G ++ Sbjct: 295 GIRVDT--TDPIEKMGIEKAFKRIGSSDICICVIDGTQPLPLNVLDLLKSSDLSGSEIIF 352 Query: 320 ALNKWDMVSDKLNL 333 +NK D+V D L Sbjct: 353 VVNKIDIVDDSCKL 366 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 51/177 (28%), Positives = 83/177 (46%), Gaps = 11/177 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + ++GAPNVGKS+L N++ +++V + PG TRD + ING N+ DTAGI Sbjct: 241 MTLLGAPNVGKSSLLNQIASDDISIVSDIPGTTRDIVSSIVNINGYKVNLFDTAGIRVDT 300 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIP---IIIVSNKM 121 I K ++ I + + + +ID G P + L+ ++ II V NK+ Sbjct: 301 TDPIEKMGIEKAFKRIGSSDICICVID---GTQPLPLNVLDLLKSSDLSGSEIIFVVNKI 357 Query: 122 D-----TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLE 173 D ++++ Y +L +I +S G EL +V+ FK N E Sbjct: 358 DIVDDSCKLSKIQQYIGNNLTGCKICFVSCLKSTGIDELVTVLTGKFKTLTQNEENE 414 >gi|313202911|ref|YP_004041568.1| tRNA modification GTPase trme [Paludibacter propionicigenes WB4] gi|312442227|gb|ADQ78583.1| tRNA modification GTPase trmE [Paludibacter propionicigenes WB4] Length = 462 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 58/186 (31%), Positives = 103/186 (55%), Gaps = 11/186 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG NVGKSTL N L+ + A+V + G TRD + I+G+ F +DTAGI D K Sbjct: 223 VALVGETNVGKSTLLNVLLNEDKAIVSDIHGTTRDVIEDSINIDGITFRFIDTAGIRDTK 282 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNI--PIIIVSNKMD 122 + I ++T I +A ++L+++D ++ + +T + K++ +I+V NK+D Sbjct: 283 D-KIENMGIERTYQKIEQASIVLWILDCTQ-LSEHMEWLTDRIAKRSAGKKVILVFNKID 340 Query: 123 TRIA--QRNFYEIYSLDFK-EIVEISAEHDLGTSELHSVIFKIFKQKYPN-HPLEMIENN 178 +IA +R+ F+ E + ISA + T +L + K + P+ HP +++ +N Sbjct: 341 -KIADDERDVLSQLFEQFEGERIYISARERINTDKLQKALTK--AAQLPDIHPGDVVVSN 397 Query: 179 KRNEES 184 R+ E+ Sbjct: 398 VRHYEA 403 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 38/126 (30%), Positives = 62/126 (49%), Gaps = 6/126 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VG NVGKSTL+N LL ++ + G TRD + S N DTAG+R Sbjct: 223 VALVGETNVGKSTLLNVLLNEDKAIVSDIHGTTRDVIEDSINIDGITFRFIDTAGIRDTK 282 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVF--NTGHAVVLALNK 323 + +E ++++ Q + + +LD T E + + D + + G V+L NK Sbjct: 283 ---DKIENMGIERTYQKIEQASIVLWILDCTQLSEHMEW-LTDRIAKRSAGKKVILVFNK 338 Query: 324 WDMVSD 329 D ++D Sbjct: 339 IDKIAD 344 >gi|149019560|ref|ZP_01834879.1| GTP-binding protein Era [Streptococcus pneumoniae SP23-BS72] gi|147930935|gb|EDK81915.1| GTP-binding protein Era [Streptococcus pneumoniae SP23-BS72] Length = 299 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 48/178 (26%), Positives = 86/178 (48%), Gaps = 5/178 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKST N ++ +K+A++ + TR+++ G + +DT GI K Sbjct: 8 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 ++ M + + E +LF++ + D I L+ +P+I+V NK+D Sbjct: 68 -TALGDFMVESAYSTLREVDTVLFMVPADEARGKGDDMIIERLKAAKVPVILVVNKIDKV 126 Query: 125 IAQRNFYEIYS----LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 + +I +DFKEIV ISA S L ++ + + + P + I ++ Sbjct: 127 HPDQLLSQIDDFRNQMDFKEIVPISALQGNNVSRLVDILSENLDEGFQYFPSDQITDH 184 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKST +N ++G + ++ TR+ + + I DT G+ KP Sbjct: 8 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +L V+ + ++R +T + ++ A K D I++ + V+L +NK D Sbjct: 68 ---TALGDFMVESAYSTLREVDTVLFMVPADEARGKGDDMIIERLKAAKVPVILVVNKID 124 Query: 326 MV 327 V Sbjct: 125 KV 126 >gi|16331223|ref|NP_441951.1| GTP-binding protein Era [Synechocystis sp. PCC 6803] gi|3334177|sp|Q55526|ERA_SYNY3 RecName: Full=GTPase Era gi|1001399|dbj|BAA10021.1| GTP-binding protein Era [Synechocystis sp. PCC 6803] Length = 315 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 40/120 (33%), Positives = 67/120 (55%), Gaps = 3/120 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VGRPNVGKSTL+N+L+G +T + TR+ + + I + DT G+ KP Sbjct: 25 VAIVGRPNVGKSTLMNQLVGQKIAITSPVAQTTRNRLQGIITTPSSQIILLDTPGIHKPH 84 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + VK ++Q++ + + + L+D++ + D +VD + T VV+ LNK D Sbjct: 85 H---ELGRVLVKNAIQAIHSVDLVVFLVDSSATLGRGDRFVVDLLQKTDGPVVVGLNKQD 141 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 41/120 (34%), Positives = 65/120 (54%), Gaps = 1/120 (0%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N+LV +K+A+ TR+RL G ++DT GI Sbjct: 25 VAIVGRPNVGKSTLMNQLVGQKIAITSPVAQTTRNRLQGIITTPSSQIILLDTPGIHK-P 83 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + + + AI+ L++FL+DS A + D + L+K + P+++ NK D + Sbjct: 84 HHELGRVLVKNAIQAIHSVDLVVFLVDSSATLGRGDRFVVDLLQKTDGPVVVGLNKQDQQ 143 >gi|187930816|ref|YP_001901303.1| tRNA modification GTPase TrmE [Ralstonia pickettii 12J] gi|309780188|ref|ZP_07674939.1| tRNA modification GTPase TrmE [Ralstonia sp. 5_7_47FAA] gi|187727706|gb|ACD28871.1| tRNA modification GTPase TrmE [Ralstonia pickettii 12J] gi|308920891|gb|EFP66537.1| tRNA modification GTPase TrmE [Ralstonia sp. 5_7_47FAA] Length = 481 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 43/125 (34%), Positives = 71/125 (56%), Gaps = 8/125 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + + G PNVGKS+L N L ++A+V G TRD++ I G+ NIVDTAG+ D + Sbjct: 241 VVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDKVQQTIQIEGIPLNIVDTAGLRDTE 300 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDS----KAGITPYDHAITSFLRK---KNIPIIIV 117 + + + ++T AI A ++L L+D+ G++P D AI + + + +P + V Sbjct: 301 D-EVERIGIERTWAAIARADVVLHLLDATDYRAKGLSPEDTAIDARIAEHVPAGVPTLRV 359 Query: 118 SNKMD 122 NK+D Sbjct: 360 INKID 364 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 30/93 (32%), Positives = 52/93 (55%), Gaps = 3/93 (3%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 L + + G+PNVGKS+L+N L G + +G TRD V + + P+ I DTAG+R Sbjct: 239 LHVVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDKVQQTIQIEGIPLNIVDTAGLRD 298 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDAT 296 + +E+ ++++ ++ + + LLDAT Sbjct: 299 ---TEDEVERIGIERTWAAIARADVVLHLLDAT 328 >gi|306829343|ref|ZP_07462533.1| GTP-binding protein Era [Streptococcus mitis ATCC 6249] gi|322374470|ref|ZP_08048984.1| GTP-binding protein Era [Streptococcus sp. C300] gi|304428429|gb|EFM31519.1| GTP-binding protein Era [Streptococcus mitis ATCC 6249] gi|321279970|gb|EFX57009.1| GTP-binding protein Era [Streptococcus sp. C300] Length = 299 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 48/178 (26%), Positives = 87/178 (48%), Gaps = 5/178 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKST N ++ +K+A++ + TR+++ G + +DT GI K Sbjct: 8 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 ++ M + + E +LF++ + D I L+ +P+I+V NK+D Sbjct: 68 -TALGDFMVESAYSTLREVDTVLFMVPADEPRGKGDDMIIERLKAAKVPVILVVNKIDKV 126 Query: 125 IAQRNFYEIYS----LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 + +I +DFKEIV ISA S L ++ + ++ + P + I ++ Sbjct: 127 HPDQLLAQIDDFRNQMDFKEIVPISALQGNNVSRLIDILSENLEEGFQYFPADQITDH 184 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKST +N ++G + ++ TR+ + + I DT G+ KP Sbjct: 8 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +L V+ + ++R +T + ++ A P K D I++ + V+L +NK D Sbjct: 68 ---TALGDFMVESAYSTLREVDTVLFMVPADEPRGKGDDMIIERLKAAKVPVILVVNKID 124 Query: 326 MV 327 V Sbjct: 125 KV 126 >gi|78486532|ref|YP_392457.1| tRNA modification GTPase TrmE [Thiomicrospira crunogena XCL-2] gi|78364818|gb|ABB42783.1| tRNA modification GTPase trmE [Thiomicrospira crunogena XCL-2] Length = 475 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 47/149 (31%), Positives = 85/149 (57%), Gaps = 7/149 (4%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 ++ I+G PN GKS+L N L ++ A+V + G TRD + + I+G+ +++DTAG+ + Sbjct: 243 SVVILGRPNAGKSSLLNALSGRESAIVTDIAGTTRDIVKEEIQIDGMPLHVLDTAGLREA 302 Query: 64 KNCSIAKQMNDQTE-LAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + +Q+ Q AI EA IL ++ + I P D AI + +IP+ ++ NK+D Sbjct: 303 TDA--VEQIGIQRAWAAIEEADRILVMVQANEAIHPEDQAILEKM-PSHIPVTLIHNKID 359 Query: 123 TRIAQRNFYEIYSLDFKEIVEISAEHDLG 151 + +++ E+ D + + +SA+H LG Sbjct: 360 --LIEKS-PELSENDGETEIWLSAKHHLG 385 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/130 (26%), Positives = 68/130 (52%), Gaps = 6/130 (4%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + + + ++GRPN GKS+L+N L G + +G TRD V P+ + DTA Sbjct: 238 LREGMSVVILGRPNAGKSSLLNALSGRESAIVTDIAGTTRDIVKEEIQIDGMPLHVLDTA 297 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGH-AVV 318 G+R+ T+++EQ ++++ ++ + +V++ A +D I++ + H V Sbjct: 298 GLREA---TDAVEQIGIQRAWAAIEEADRILVMVQANEAIHPEDQAILEKM--PSHIPVT 352 Query: 319 LALNKWDMVS 328 L NK D++ Sbjct: 353 LIHNKIDLIE 362 >gi|313891295|ref|ZP_07824913.1| ribosome biogenesis GTPase Era [Streptococcus pseudoporcinus SPIN 20026] gi|313120362|gb|EFR43483.1| ribosome biogenesis GTPase Era [Streptococcus pseudoporcinus SPIN 20026] Length = 299 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 50/178 (28%), Positives = 85/178 (47%), Gaps = 5/178 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKST N ++ +K+A++ + TR+++ G +DT GI K Sbjct: 8 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTEQEQIVFIDTPGIHKPK 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 ++ M + + E +LF++ + D I LR IP+I+V NK+D Sbjct: 68 -TALGDFMVESAYSTLREVDTVLFMVPADEKRGKGDDMIMERLRNAKIPVILVINKIDKV 126 Query: 125 IAQRNFYEI----YSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 + +I +DFKEIV ISA L S++ ++ + P + I ++ Sbjct: 127 HPDQLLEQIDDFRSQMDFKEIVPISALEGNNIPTLMSLLTDNLEEGFQYFPADQITDH 184 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/137 (27%), Positives = 69/137 (50%), Gaps = 5/137 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKST +N ++G + ++ TR+ + + + I DT G+ KP Sbjct: 8 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTEQEQIVFIDTPGIHKPK 67 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +L V+ + ++R +T + ++ A K D I++ + N V+L +NK D Sbjct: 68 T---ALGDFMVESAYSTLREVDTVLFMVPADEKRGKGDDMIMERLRNAKIPVILVINKID 124 Query: 326 MV--SDKLNLLQDLRTK 340 V L + D R++ Sbjct: 125 KVHPDQLLEQIDDFRSQ 141 >gi|309751333|gb|ADO81317.1| tRNA modification GTPase mnmE [Haemophilus influenzae R2866] Length = 461 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 77/150 (51%), Gaps = 10/150 (6%) Query: 167 YPNHPLEM-----IENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLIN 221 +P+ ++ IE N R + E++ SE K + + +++ + GRPN GKS+L+N Sbjct: 183 FPDEEIDFLADGKIEANLRGIINQLEDVRSEAKQG-SILREGMKVVIAGRPNAGKSSLLN 241 Query: 222 RLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQ 281 L G+ + +G TRD + + P+ I DTAG+R T+ +E+ + ++ Sbjct: 242 ALAGHEAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRNA---TDEVERIGISRAWT 298 Query: 282 SVRTCETTIVLLDATIPFEKQDLRIVDSVF 311 + + I++LD++ P E DL V S F Sbjct: 299 EIEQADRIILMLDSSDP-ESADLSKVRSEF 327 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/140 (30%), Positives = 71/140 (50%), Gaps = 9/140 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + I G PN GKS+L N L + A+V + G TRD L I+G+ +I+DTAG+ + Sbjct: 226 VVIAGRPNAGKSSLLNALAGHEAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRNAT 285 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITS-FLRK--KNIPIIIVSNKM 121 + + + + I +A I+ ++DS + + S FL K +P+ IV NK+ Sbjct: 286 D-EVERIGISRAWTEIEQADRIILMLDSSDPESADLSKVRSEFLAKLPSTLPVTIVRNKI 344 Query: 122 D-----TRIAQRNFYEIYSL 136 D +++ Y+I SL Sbjct: 345 DLNGEQASESEQGGYQIISL 364 >gi|293365236|ref|ZP_06611953.1| GTP-binding protein Era [Streptococcus oralis ATCC 35037] gi|307703775|ref|ZP_07640716.1| GTP-binding protein Era [Streptococcus oralis ATCC 35037] gi|291316686|gb|EFE57122.1| GTP-binding protein Era [Streptococcus oralis ATCC 35037] gi|307622610|gb|EFO01606.1| GTP-binding protein Era [Streptococcus oralis ATCC 35037] Length = 299 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 48/178 (26%), Positives = 87/178 (48%), Gaps = 5/178 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKST N ++ +K+A++ + TR+++ G + +DT GI K Sbjct: 8 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 ++ M + + E +LF++ + D I L+ +P+I+V NK+D Sbjct: 68 -TALGDFMVESAYSTLREVDTVLFMVPADEPRGKGDDMIIDRLKAAKVPVILVVNKIDKV 126 Query: 125 IAQRNFYEIYS----LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 + +I +DFKEIV ISA S L ++ + ++ + P + I ++ Sbjct: 127 HPDQLLAQIDDFRNQMDFKEIVPISALQGNNVSRLIDILSENLEEGFQYFPADQITDH 184 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKST +N ++G + ++ TR+ + + I DT G+ KP Sbjct: 8 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +L V+ + ++R +T + ++ A P K D I+D + V+L +NK D Sbjct: 68 ---TALGDFMVESAYSTLREVDTVLFMVPADEPRGKGDDMIIDRLKAAKVPVILVVNKID 124 Query: 326 MV 327 V Sbjct: 125 KV 126 >gi|255026481|ref|ZP_05298467.1| tRNA modification GTPase TrmE [Listeria monocytogenes FSL J2-003] Length = 457 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 39/132 (29%), Positives = 74/132 (56%), Gaps = 5/132 (3%) Query: 195 SSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIE 254 S K + + L A++GRPNVGKS+L+N+L+ + + +G TRD + N + P+ Sbjct: 211 SQGKILREGLATAIIGRPNVGKSSLLNQLIQEEKAIVTDIAGTTRDIIEEYVNVRGVPLR 270 Query: 255 IFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTG 314 + DTAG+R+ I E + V++S +++ + +++L+ + +D + ++ G Sbjct: 271 LIDTAGIRETEDIVEKI---GVERSRKALADADFILLVLNQSEELTVEDEALFEAA--AG 325 Query: 315 HAVVLALNKWDM 326 H V+ LNK D+ Sbjct: 326 HNYVVVLNKTDL 337 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 44/158 (27%), Positives = 82/158 (51%), Gaps = 3/158 (1%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N+L++++ A+V + G TRD + + GV ++DTAGI + ++ Sbjct: 223 AIIGRPNVGKSSLLNQLIQEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAGIRETED 282 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 + K +++ A+ +A IL +++ +T D A+ N +++ ++T++ Sbjct: 283 I-VEKIGVERSRKALADADFILLVLNQSEELTVEDEALFEAAAGHNYVVVLNKTDLETKL 341 Query: 126 AQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 E+ + IV S +D G L I +F Sbjct: 342 DINRVRELAGEN--PIVSTSLVNDEGLEALEEAIKTLF 377 >gi|168485921|ref|ZP_02710429.1| GTP-binding protein Era [Streptococcus pneumoniae CDC1087-00] gi|183571044|gb|EDT91572.1| GTP-binding protein Era [Streptococcus pneumoniae CDC1087-00] Length = 299 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 48/178 (26%), Positives = 86/178 (48%), Gaps = 5/178 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKST N ++ +K+A++ + TR+++ G + +DT GI K Sbjct: 8 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 ++ M + + E +LF++ + D I L+ +P+I+V NK+D Sbjct: 68 -TALGDFMVESAYSTLREVDTVLFMVPADEARGKGDDMIIERLKAAKVPVILVVNKIDKV 126 Query: 125 IAQRNFYEIYS----LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 + +I +DFKEIV ISA S L ++ + + + P + I ++ Sbjct: 127 HPDQLLSQIDDFRNQMDFKEIVPISALQGNNVSRLVDILSENLDEGFQYFPSDQITDH 184 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKST +N ++G + ++ TR+ + + I DT G+ KP Sbjct: 8 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +L V+ + ++R +T + ++ A K D I++ + V+L +NK D Sbjct: 68 ---TALGDFMVESAYSTLREVDTVLFMVPADEARGKGDDMIIERLKAAKVPVILVVNKID 124 Query: 326 MV 327 V Sbjct: 125 KV 126 >gi|330815987|ref|YP_004359692.1| GTP-binding protein Era [Burkholderia gladioli BSR3] gi|327368380|gb|AEA59736.1| GTP-binding protein Era [Burkholderia gladioli BSR3] Length = 300 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 43/149 (28%), Positives = 74/149 (49%), Gaps = 7/149 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N LV +K+++ TR R+ G + + VDT G Sbjct: 15 IAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRITGIHTLPDAQYIFVDTPGFQTRH 74 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + ++ + +N + ILF+I++ P D + + K++P +++ NK+D Sbjct: 75 STALNRSLNRTVTSTLTSVDAILFVIEA-GRFGPDDQKVLDLI-PKSVPTLLILNKLDRI 132 Query: 125 IAQRNFYEIYS-----LDFKEIVEISAEH 148 + + + +F E+V +SA+H Sbjct: 133 TDKSSLFPFLKQMGELREFAEVVPLSAKH 161 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 39/133 (29%), Positives = 70/133 (52%), Gaps = 4/133 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA+VGRPNVGKSTL+N L+G +T ++ TR ++ + DT G + + Sbjct: 15 IAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRITGIHTLPDAQYIFVDTPGFQ--T 72 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 R + +L +++ +++ S T I+ + F D +++D + + +L LNK D Sbjct: 73 RHSTAL-NRSLNRTVTSTLTSVDAILFVIEAGRFGPDDQKVLDLIPKS-VPTLLILNKLD 130 Query: 326 MVSDKLNLLQDLR 338 ++DK +L L+ Sbjct: 131 RITDKSSLFPFLK 143 >gi|205829220|sp|Q31DJ0|MNME_THICR RecName: Full=tRNA modification GTPase mnmE Length = 451 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 47/149 (31%), Positives = 85/149 (57%), Gaps = 7/149 (4%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 ++ I+G PN GKS+L N L ++ A+V + G TRD + + I+G+ +++DTAG+ + Sbjct: 219 SVVILGRPNAGKSSLLNALSGRESAIVTDIAGTTRDIVKEEIQIDGMPLHVLDTAGLREA 278 Query: 64 KNCSIAKQMNDQTE-LAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + +Q+ Q AI EA IL ++ + I P D AI + +IP+ ++ NK+D Sbjct: 279 TDA--VEQIGIQRAWAAIEEADRILVMVQANEAIHPEDQAILEKM-PSHIPVTLIHNKID 335 Query: 123 TRIAQRNFYEIYSLDFKEIVEISAEHDLG 151 + +++ E+ D + + +SA+H LG Sbjct: 336 --LIEKS-PELSENDGETEIWLSAKHHLG 361 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/129 (27%), Positives = 68/129 (52%), Gaps = 6/129 (4%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + + + ++GRPN GKS+L+N L G + +G TRD V P+ + DTA Sbjct: 214 LREGMSVVILGRPNAGKSSLLNALSGRESAIVTDIAGTTRDIVKEEIQIDGMPLHVLDTA 273 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGH-AVV 318 G+R+ T+++EQ ++++ ++ + +V++ A +D I++ + H V Sbjct: 274 GLREA---TDAVEQIGIQRAWAAIEEADRILVMVQANEAIHPEDQAILEKM--PSHIPVT 328 Query: 319 LALNKWDMV 327 L NK D++ Sbjct: 329 LIHNKIDLI 337 >gi|227485741|ref|ZP_03916057.1| tRNA modification GTP-binding protein TrmE [Anaerococcus lactolyticus ATCC 51172] gi|227236296|gb|EEI86311.1| tRNA modification GTP-binding protein TrmE [Anaerococcus lactolyticus ATCC 51172] Length = 454 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 68/119 (57%), Gaps = 5/119 (4%) Query: 208 VVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRI 267 +VG+PNVGKS+L+N LL NR + G TRD ++ + + ++I DTAG+R + Sbjct: 225 IVGKPNVGKSSLLNVLLDENRAIVTDIPGTTRDLITEYISLGDFTLKINDTAGIRDTDDL 284 Query: 268 TESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 E + V KS++ + + + + D + F+++D +I+D + G +L LNK D+ Sbjct: 285 VEKI---GVDKSIELIDESDLILAIFDMSRDFDEEDKKILDLI--RGKNALLILNKADL 338 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 61/186 (32%), Positives = 87/186 (46%), Gaps = 10/186 (5%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PNVGKS+L N L+ + A+V + PG TRD + + I DTAGI D + Sbjct: 225 IVGKPNVGKSSLLNVLLDENRAIVTDIPGTTRDLITEYISLGDFTLKINDTAGIRDTDDL 284 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 ++ EL I+E+ LIL + D D I +R KN +I+ NK D Sbjct: 285 VEKIGVDKSIEL-IDESDLILAIFDMSRDFDEEDKKILDLIRGKNALLIL--NKADL--- 338 Query: 127 QRNFYE-IYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE--E 183 + F E I+ ++ I++ S LG +L I IF K +I N + + Sbjct: 339 EGKFDEKIFDVNLP-IIKTSMVDQLGIRKLEDTIRDIFDTKEIKRESVLITNTRHERLLK 397 Query: 184 SPKENI 189 S KE I Sbjct: 398 SAKEKI 403 >gi|15900846|ref|NP_345450.1| GTP-binding protein Era [Streptococcus pneumoniae TIGR4] gi|15902915|ref|NP_358465.1| GTP-binding protein Era [Streptococcus pneumoniae R6] gi|111657969|ref|ZP_01408676.1| hypothetical protein SpneT_02000858 [Streptococcus pneumoniae TIGR4] gi|116516762|ref|YP_816339.1| GTP-binding protein Era [Streptococcus pneumoniae D39] gi|148984711|ref|ZP_01817979.1| GTP-binding protein Era [Streptococcus pneumoniae SP3-BS71] gi|148992896|ref|ZP_01822515.1| GTP-binding protein Era [Streptococcus pneumoniae SP9-BS68] gi|148998595|ref|ZP_01826035.1| GTP-binding protein Era [Streptococcus pneumoniae SP11-BS70] gi|149002520|ref|ZP_01827454.1| GTP-binding protein Era [Streptococcus pneumoniae SP14-BS69] gi|149010385|ref|ZP_01831756.1| GTP-binding protein Era [Streptococcus pneumoniae SP19-BS75] gi|168483038|ref|ZP_02707990.1| GTP-binding protein Era [Streptococcus pneumoniae CDC1873-00] gi|168490212|ref|ZP_02714411.1| GTP-binding protein Era [Streptococcus pneumoniae SP195] gi|168491058|ref|ZP_02715201.1| GTP-binding protein Era [Streptococcus pneumoniae CDC0288-04] gi|168494398|ref|ZP_02718541.1| GTP-binding protein Era [Streptococcus pneumoniae CDC3059-06] gi|168575631|ref|ZP_02721567.1| GTP-binding protein Era [Streptococcus pneumoniae MLV-016] gi|182683915|ref|YP_001835662.1| GTP-binding protein Era [Streptococcus pneumoniae CGSP14] gi|225856627|ref|YP_002738138.1| GTP-binding protein Era [Streptococcus pneumoniae P1031] gi|225858762|ref|YP_002740272.1| GTP-binding protein Era [Streptococcus pneumoniae 70585] gi|225861144|ref|YP_002742653.1| GTP-binding protein Era [Streptococcus pneumoniae Taiwan19F-14] gi|237650882|ref|ZP_04525134.1| GTP-binding protein Era [Streptococcus pneumoniae CCRI 1974] gi|237821333|ref|ZP_04597178.1| GTP-binding protein Era [Streptococcus pneumoniae CCRI 1974M2] gi|298229555|ref|ZP_06963236.1| GTP-binding protein Era [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254476|ref|ZP_06978062.1| GTP-binding protein Era [Streptococcus pneumoniae str. Canada MDR_19A] gi|298503021|ref|YP_003724961.1| GTP-binding protein Era [Streptococcus pneumoniae TCH8431/19A] gi|303254436|ref|ZP_07340542.1| GTP-binding protein Era [Streptococcus pneumoniae BS455] gi|303259881|ref|ZP_07345856.1| GTP-binding protein Era [Streptococcus pneumoniae SP-BS293] gi|303262295|ref|ZP_07348239.1| GTP-binding protein Era [Streptococcus pneumoniae SP14-BS292] gi|303264717|ref|ZP_07350635.1| GTP-binding protein Era [Streptococcus pneumoniae BS397] gi|303267324|ref|ZP_07353184.1| GTP-binding protein Era [Streptococcus pneumoniae BS457] gi|303269129|ref|ZP_07354908.1| GTP-binding protein Era [Streptococcus pneumoniae BS458] gi|307067626|ref|YP_003876592.1| GTPase [Streptococcus pneumoniae AP200] gi|61223691|sp|P0A3C3|ERA_STRPN RecName: Full=GTPase Era gi|61223692|sp|P0A3C4|ERA_STRR6 RecName: Full=GTPase Era gi|122278775|sp|Q04KV9|ERA_STRP2 RecName: Full=GTPase Era gi|226741242|sp|B2IPC3|ERA_STRPS RecName: Full=GTPase Era gi|254783665|sp|C1C6U6|ERA_STRP7 RecName: Full=GTPase Era gi|254783669|sp|C1CK50|ERA_STRZP RecName: Full=GTPase Era gi|254783670|sp|C1CRT1|ERA_STRZT RecName: Full=GTPase Era gi|5305399|gb|AAD41632.1|AF072811_1 GTPase Era [Streptococcus pneumoniae] gi|14972444|gb|AAK75090.1| GTP-binding protein Era [Streptococcus pneumoniae TIGR4] gi|15458475|gb|AAK99675.1| GTPase/GTP-binding protein [Streptococcus pneumoniae R6] gi|116077338|gb|ABJ55058.1| GTP-binding protein Era [Streptococcus pneumoniae D39] gi|147755593|gb|EDK62640.1| GTP-binding protein Era [Streptococcus pneumoniae SP11-BS70] gi|147759457|gb|EDK66449.1| GTP-binding protein Era [Streptococcus pneumoniae SP14-BS69] gi|147764866|gb|EDK71795.1| GTP-binding protein Era [Streptococcus pneumoniae SP19-BS75] gi|147923102|gb|EDK74217.1| GTP-binding protein Era [Streptococcus pneumoniae SP3-BS71] gi|147928348|gb|EDK79364.1| GTP-binding protein Era [Streptococcus pneumoniae SP9-BS68] gi|172043458|gb|EDT51504.1| GTP-binding protein Era [Streptococcus pneumoniae CDC1873-00] gi|182629249|gb|ACB90197.1| GTP-binding protein Era [Streptococcus pneumoniae CGSP14] gi|183571455|gb|EDT91983.1| GTP-binding protein Era [Streptococcus pneumoniae SP195] gi|183574573|gb|EDT95101.1| GTP-binding protein Era [Streptococcus pneumoniae CDC0288-04] gi|183575685|gb|EDT96213.1| GTP-binding protein Era [Streptococcus pneumoniae CDC3059-06] gi|183578605|gb|EDT99133.1| GTP-binding protein Era [Streptococcus pneumoniae MLV-016] gi|225720717|gb|ACO16571.1| GTP-binding protein Era [Streptococcus pneumoniae 70585] gi|225725237|gb|ACO21089.1| GTP-binding protein Era [Streptococcus pneumoniae P1031] gi|225726867|gb|ACO22718.1| GTP-binding protein Era [Streptococcus pneumoniae Taiwan19F-14] gi|298238616|gb|ADI69747.1| GTP-binding protein Era [Streptococcus pneumoniae TCH8431/19A] gi|301799945|emb|CBW32528.1| GTP-binding protein Era homolog [Streptococcus pneumoniae OXC141] gi|301801812|emb|CBW34523.1| GTP-binding protein Era homolog [Streptococcus pneumoniae INV200] gi|302598603|gb|EFL65643.1| GTP-binding protein Era [Streptococcus pneumoniae BS455] gi|302636618|gb|EFL67109.1| GTP-binding protein Era [Streptococcus pneumoniae SP14-BS292] gi|302639086|gb|EFL69546.1| GTP-binding protein Era [Streptococcus pneumoniae SP-BS293] gi|302641316|gb|EFL71684.1| GTP-binding protein Era [Streptococcus pneumoniae BS458] gi|302643134|gb|EFL73421.1| GTP-binding protein Era [Streptococcus pneumoniae BS457] gi|302645804|gb|EFL76033.1| GTP-binding protein Era [Streptococcus pneumoniae BS397] gi|306409163|gb|ADM84590.1| GTPase [Streptococcus pneumoniae AP200] gi|327389247|gb|EGE87592.1| GTP-binding protein Era [Streptococcus pneumoniae GA04375] gi|332073302|gb|EGI83781.1| GTP-binding protein Era [Streptococcus pneumoniae GA17570] gi|332076243|gb|EGI86709.1| GTP-binding protein Era [Streptococcus pneumoniae GA41301] gi|332201435|gb|EGJ15505.1| GTP-binding protein Era [Streptococcus pneumoniae GA47368] gi|332202824|gb|EGJ16893.1| GTP-binding protein Era [Streptococcus pneumoniae GA41317] Length = 299 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 48/178 (26%), Positives = 86/178 (48%), Gaps = 5/178 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKST N ++ +K+A++ + TR+++ G + +DT GI K Sbjct: 8 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 ++ M + + E +LF++ + D I L+ +P+I+V NK+D Sbjct: 68 -TALGDFMVESAYSTLREVDTVLFMVPADEARGKGDDMIIERLKAAKVPVILVVNKIDKV 126 Query: 125 IAQRNFYEIYS----LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 + +I +DFKEIV ISA S L ++ + + + P + I ++ Sbjct: 127 HPDQLLSQIDDFRNQMDFKEIVPISALQGNNVSRLVDILSENLDEGFQYFPSDQITDH 184 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKST +N ++G + ++ TR+ + + I DT G+ KP Sbjct: 8 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +L V+ + ++R +T + ++ A K D I++ + V+L +NK D Sbjct: 68 ---TALGDFMVESAYSTLREVDTVLFMVPADEARGKGDDMIIERLKAAKVPVILVVNKID 124 Query: 326 MV 327 V Sbjct: 125 KV 126 >gi|238018228|ref|ZP_04598654.1| hypothetical protein VEIDISOL_00052 [Veillonella dispar ATCC 17748] gi|237864699|gb|EEP65989.1| hypothetical protein VEIDISOL_00052 [Veillonella dispar ATCC 17748] Length = 461 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 46/152 (30%), Positives = 80/152 (52%), Gaps = 3/152 (1%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T IVG PN GKS+L N L+++ A+V + PG TRD + + G+ ++DTAGI D Sbjct: 225 TTVIVGRPNAGKSSLMNALLRENRAIVTDIPGTTRDSIEEYMTVEGISLRLIDTAGIRDT 284 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 ++ A + ++ IN+A ++L +ID +TP + I + + N +++ + M Sbjct: 285 QDTVEALGV-ERARDYINKADIVLCVIDGSTPLTPEEIEILTSVSGLNTIVLLNKSDMAQ 343 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 + + E +F I ISA+ G++ L Sbjct: 344 VVTDEHIKE--HGNFTAIERISAKEGEGSAVL 373 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 47/156 (30%), Positives = 76/156 (48%), Gaps = 14/156 (8%) Query: 208 VVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRI 267 +VGRPN GKS+L+N LL NR + G TRDS+ + + + DTAG+R Sbjct: 228 IVGRPNAGKSSLMNALLRENRAIVTDIPGTTRDSIEEYMTVEGISLRLIDTAGIRDTQDT 287 Query: 268 TESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMV 327 E+L V+++ + + + ++D + P +++ I+ SV +G ++ LNK DM Sbjct: 288 VEAL---GVERARDYINKADIVLCVIDGSTPLTPEEIEILTSV--SGLNTIVLLNKSDMA 342 Query: 328 SDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 ++ D K N I IS + GEG Sbjct: 343 ----QVVTDEHIKEHGNFTA-----IERISAKEGEG 369 >gi|120613418|ref|YP_973096.1| tRNA modification GTPase TrmE [Acidovorax citrulli AAC00-1] gi|205829049|sp|A1TWI4|MNME_ACIAC RecName: Full=tRNA modification GTPase mnmE gi|120591882|gb|ABM35322.1| tRNA modification GTPase trmE [Acidovorax citrulli AAC00-1] Length = 482 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 47/185 (25%), Positives = 86/185 (46%), Gaps = 9/185 (4%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + +++ + G+PN GKS+L+N L G + +G TRD V + + P+ + DTA Sbjct: 228 LREGIKVVIAGQPNAGKSSLLNALAGAELAIVTPIAGTTRDKVQQTIQIEGVPLHVIDTA 287 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP----FEKQDLRIVDSVFNTGH 315 G+R+ + +E+ ++++ Q + + + L D T +E D I + Sbjct: 288 GLRESD---DEVERIGIERAWQEIAAADAVLFLHDLTRAGQPDYEAADAEIAARLARMAP 344 Query: 316 AVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEIN 375 A V ++ W+ SD+ + G +S RTGEGLD L +L+I Sbjct: 345 AHVPVVDVWNK-SDRAEGSAAAGQGGVATASASGRAAAVRLSARTGEGLDGLRRVLLDIA 403 Query: 376 KLWKT 380 W++ Sbjct: 404 G-WQS 407 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 42/133 (31%), Positives = 67/133 (50%), Gaps = 24/133 (18%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + I G PN GKS+L N L ++A+V G TRD++ I GV +++DTAG+ Sbjct: 234 VVIAGQPNAGKSSLLNALAGAELAIVTPIAGTTRDKVQQTIQIEGVPLHVIDTAGL---- 289 Query: 65 NCSIAKQMNDQTE--------LAINEAHLILFLID-SKAGITPYDHA---ITSFLRK--- 109 ++ +D+ E I A +LFL D ++AG Y+ A I + L + Sbjct: 290 -----RESDDEVERIGIERAWQEIAAADAVLFLHDLTRAGQPDYEAADAEIAARLARMAP 344 Query: 110 KNIPIIIVSNKMD 122 ++P++ V NK D Sbjct: 345 AHVPVVDVWNKSD 357 >gi|110834491|ref|YP_693350.1| GTP-binding protein Era-like protein [Alcanivorax borkumensis SK2] gi|110647602|emb|CAL17078.1| GTP-binding protein Era homolog [Alcanivorax borkumensis SK2] Length = 310 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 40/121 (33%), Positives = 70/121 (57%), Gaps = 6/121 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIV--DTAGIAD 62 ++IVG PNVGKSTL N L+ +K+++ P TR R++G I++ + IV DT GI Sbjct: 20 VSIVGRPNVGKSTLMNHLIGQKVSITSRKPQTTRHRIHG--ILSRDNYQIVFADTPGIHT 77 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFL-RKKNIPIIIVSNKM 121 G+ ++ + MN+ + +I ++D+ TP D + S L ++P++++ NK+ Sbjct: 78 GQEKALNRAMNEAAVSTLFGVDVICMMVDAMKW-TPADEHVLSLLPEGGDVPVLLIINKV 136 Query: 122 D 122 D Sbjct: 137 D 137 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 37/130 (28%), Positives = 67/130 (51%), Gaps = 4/130 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +++VGRPNVGKSTL+N L+G +T + TR + + N+ I DT G+ Sbjct: 20 VSIVGRPNVGKSTLMNHLIGQKVSITSRKPQTTRHRIHGILSRDNYQIVFADTPGIHTGQ 79 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHA-VVLALNKW 324 ++L + + ++ ++ + +++DA + + D ++ + G V+L +NK Sbjct: 80 E--KALNRAMNEAAVSTLFGVDVICMMVDA-MKWTPADEHVLSLLPEGGDVPVLLIINKV 136 Query: 325 DMVSDKLNLL 334 D V DK LL Sbjct: 137 DNVDDKSALL 146 >gi|33864338|ref|NP_895898.1| tRNA modification GTPase TrmE [Prochlorococcus marinus str. MIT 9313] gi|46577389|sp|Q7V491|MNME_PROMM RecName: Full=tRNA modification GTPase mnmE gi|33641118|emb|CAE22248.1| putative thiophen / furan oxidation protein [Prochlorococcus marinus str. MIT 9313] Length = 470 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 45/130 (34%), Positives = 71/130 (54%), Gaps = 18/130 (13%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKS+L NRL +++ A+V + PG TRD L + ++ GV +VDTAGI Sbjct: 230 VALVGRPNVGKSSLLNRLSRRERAIVTDLPGTTRDVLESEIVLEGVPITLVDTAGI---- 285 Query: 65 NCSIAKQMNDQTE-LAINEAH-------LILFLIDSKAGITPYDHAITSFLRKKNIPIII 116 + D E L I+ +H + + + D G T D A+ + + ++P ++ Sbjct: 286 -----RATQDALEQLGIDRSHQALAAADVAVLVFDLSLGWTADDAALLAQI-PDDLPRLL 339 Query: 117 VSNKMDTRIA 126 V NK D + A Sbjct: 340 VGNKADLQPA 349 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 32/82 (39%), Positives = 48/82 (58%), Gaps = 3/82 (3%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + L++A+VGRPNVGKS+L+NRL R + G TRD + + PI + DTA Sbjct: 224 LRQGLQVALVGRPNVGKSSLLNRLSRRERAIVTDLPGTTRDVLESEIVLEGVPITLVDTA 283 Query: 260 GMRKPSRITESLEQKTVKKSMQ 281 G+R ++LEQ + +S Q Sbjct: 284 GIRA---TQDALEQLGIDRSHQ 302 >gi|330723738|gb|AEC46108.1| tRNA modification GTPase TrmE [Mycoplasma hyorhinis MCLD] Length = 444 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 56/176 (31%), Positives = 92/176 (52%), Gaps = 15/176 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKS+L N L+++ ++V + G TRD + +++ ++F +VDTAG+ K Sbjct: 220 VALVGTPNVGKSSLLNALIEQDKSIVSDVAGTTRDVVEASFVLSDIVFKLVDTAGVRKAK 279 Query: 65 NCSIAKQMNDQTELA-INEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 N +Q+ + L I +A +++ +ID+ +D I KN I V NK D Sbjct: 280 NK--IEQIGIKKSLEQIEKASIVIHIIDATKQENEFDKLIQE--HSKNKDYIKVYNKKD- 334 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNK 179 + NF D + + ISA+H S+L S + K F K + E+I N + Sbjct: 335 -LNPSNF------DASDKILISAKHK-DISQLESYMKKHFVNKISENE-EIISNTR 381 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 36/107 (33%), Positives = 61/107 (57%), Gaps = 3/107 (2%) Query: 190 TSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWK 249 T E + I + +++A+VG PNVGKS+L+N L+ ++ + +G TRD V S+ Sbjct: 204 TIEASERSRIIFEGIKVALVGTPNVGKSSLLNALIEQDKSIVSDVAGTTRDVVEASFVLS 263 Query: 250 NHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDAT 296 + ++ DTAG+RK +EQ +KKS++ + I ++DAT Sbjct: 264 DIVFKLVDTAGVRKAKN---KIEQIGIKKSLEQIEKASIVIHIIDAT 307 >gi|313205615|ref|YP_004044792.1| tRNA modification GTPase trme [Riemerella anatipestifer DSM 15868] gi|312444931|gb|ADQ81286.1| tRNA modification GTPase trmE [Riemerella anatipestifer DSM 15868] gi|325334957|gb|ADZ11231.1| Predicted GTPase [Riemerella anatipestifer RA-GD] Length = 463 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 45/121 (37%), Positives = 72/121 (59%), Gaps = 5/121 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PN GKSTL N L+K++ A+V + G TRD + I G F +DTAGI D Sbjct: 221 VAIIGKPNAGKSTLLNALLKEERAIVSDIAGTTRDTIEEVLHIGGHAFRFIDTAGIRDTA 280 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYD--HAITSFLRKKNIPIIIVSNKMD 122 + + ++ + IN A ++L+L D K TP + + ITS L + ++ +I++ NK+D Sbjct: 281 D-RVESIGVEKAKEKINTADILLYLFDIKDS-TPNEIINFITS-LERPDLKVILLQNKID 337 Query: 123 T 123 + Sbjct: 338 S 338 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/130 (30%), Positives = 66/130 (50%), Gaps = 6/130 (4%) Query: 196 SVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEI 255 +VKN +++A++G+PN GKSTL+N LL R + +G TRD++ + H Sbjct: 214 AVKN---GVQVAIIGKPNAGKSTLLNALLKEERAIVSDIAGTTRDTIEEVLHIGGHAFRF 270 Query: 256 FDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGH 315 DTAG+R + ES+ V+K+ + + T + + L D + + + S+ Sbjct: 271 IDTAGIRDTADRVESI---GVEKAKEKINTADILLYLFDIKDSTPNEIINFITSLERPDL 327 Query: 316 AVVLALNKWD 325 V+L NK D Sbjct: 328 KVILLQNKID 337 >gi|310828430|ref|YP_003960787.1| hypothetical protein ELI_2843 [Eubacterium limosum KIST612] gi|308740164|gb|ADO37824.1| hypothetical protein ELI_2843 [Eubacterium limosum KIST612] Length = 304 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 52/178 (29%), Positives = 88/178 (49%), Gaps = 11/178 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRD--RLYGQAIINGVIFNIVDTAGIAD 62 I+I+G PNVGKSTL N ++ +K+ + N P TR+ R + ++F +DT G+ Sbjct: 16 ISIIGRPNVGKSTLLNSIMGEKLVITANKPQTTRNAIRCIHTDADSQMVF--IDTPGMHK 73 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 KN + M E I++ ++LFL++ + I P D I L P++++ NK+D Sbjct: 74 PKN-KLGAFMLKSAEDTISDVDVVLFLVEPEDRIGPGDQYILDKLAGSRTPVLLIINKID 132 Query: 123 TRIAQRNF-----YEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 T + Y+ Y+ I+ +SA + G EL + I K + P +M+ Sbjct: 133 TVPKEELLKTIAAYQDYTF-LDSIIPVSAWNGDGVQELLAAIKKHLEPGPMYFPPDMV 189 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/177 (25%), Positives = 88/177 (49%), Gaps = 11/177 (6%) Query: 198 KNISKPLR---IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIE 254 KN +P + I+++GRPNVGKSTL+N ++G ++T ++ TR+++ + + Sbjct: 5 KNTEQPFKSGFISIIGRPNVGKSTLLNSIMGEKLVITANKPQTTRNAIRCIHTDADSQMV 64 Query: 255 IFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTG 314 DT GM KP L +K + ++ + + L++ D I+D + + Sbjct: 65 FIDTPGMHKPKN---KLGAFMLKSAEDTISDVDVVLFLVEPEDRIGPGDQYILDKLAGSR 121 Query: 315 HAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSV 371 V+L +NK D V K LL+ + A ++ + I +S G+G+ +L+ ++ Sbjct: 122 TPVLLIINKIDTVP-KEELLKTI--AAYQDYTFLDSII--PVSAWNGDGVQELLAAI 173 >gi|301794107|emb|CBW36513.1| GTP-binding protein Era homolog [Streptococcus pneumoniae INV104] gi|332204972|gb|EGJ19037.1| GTP-binding protein Era [Streptococcus pneumoniae GA47901] Length = 299 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 48/178 (26%), Positives = 86/178 (48%), Gaps = 5/178 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKST N ++ +K+A++ + TR+++ G + +DT GI K Sbjct: 8 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 ++ M + + E +LF++ + D I L+ +P+I+V NK+D Sbjct: 68 -TALGDFMVESAYSTLREVDTVLFMVPADEARGKGDDMIIERLKAAKVPVILVVNKIDKV 126 Query: 125 IAQRNFYEIYS----LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 + +I +DFKEIV ISA S L ++ + + + P + I ++ Sbjct: 127 HPDQLLSQIDDFRNQMDFKEIVPISALQGNNVSRLVDILSENLDEGFQYFPSDQITDH 184 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKST +N ++G + ++ TR+ + + I DT G+ KP Sbjct: 8 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +L V+ + ++R +T + ++ A K D I++ + V+L +NK D Sbjct: 68 ---TALGDFMVESAYSTLREVDTVLFMVPADEARGKGDDMIIERLKAAKVPVILVVNKID 124 Query: 326 MV 327 V Sbjct: 125 KV 126 >gi|283853590|ref|ZP_06370827.1| tRNA modification GTPase TrmE [Desulfovibrio sp. FW1012B] gi|283571015|gb|EFC19038.1| tRNA modification GTPase TrmE [Desulfovibrio sp. FW1012B] Length = 466 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 51/180 (28%), Positives = 84/180 (46%), Gaps = 21/180 (11%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP 264 R+A+ GR N GKS+L N LLG +R L G TRD + + P+ + DTAG+R+ Sbjct: 228 RVALFGRVNAGKSSLFNALLGTDRALVADVPGTTRDYLEEGLDLDGLPVNLTDTAGLRQ- 286 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLA-LNK 323 +++EQ + + T + ++D ++PF D + V G VL + K Sbjct: 287 --TLDAVEQAGKARGLALAGTAALGLYVVDGSVPF-APDAEAEELVAALGPDRVLGVVAK 343 Query: 324 WDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRIT 383 D+ + T A ++ I + +S RTG GL L+ ++ +TR+T Sbjct: 344 ADLPA---------ATPAPGDILAIRGLESVAVSARTGHGLAGLLTAI-------RTRLT 387 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 45/156 (28%), Positives = 70/156 (44%), Gaps = 3/156 (1%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+ G N GKS+LFN L+ A+V + PG TRD L ++G+ N+ DTAG+ + Sbjct: 229 VALFGRVNAGKSSLFNALLGTDRALVADVPGTTRDYLEEGLDLDGLPVNLTDTAGLR--Q 286 Query: 65 NCSIAKQMNDQTELAI-NEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 +Q LA+ A L L+++D P A ++ V K D Sbjct: 287 TLDAVEQAGKARGLALAGTAALGLYVVDGSVPFAPDAEAEELVAALGPDRVLGVVAKADL 346 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVI 159 A +I ++ E V +SA G + L + I Sbjct: 347 PAATPAPGDILAIRGLESVAVSARTGHGLAGLLTAI 382 >gi|260101882|ref|ZP_05752119.1| tRNA modification GTPase TrmE [Lactobacillus helveticus DSM 20075] gi|260084310|gb|EEW68430.1| tRNA modification GTPase TrmE [Lactobacillus helveticus DSM 20075] gi|328463992|gb|EGF35490.1| tRNA modification GTPase TrmE [Lactobacillus helveticus MTCC 5463] Length = 461 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 45/117 (38%), Positives = 65/117 (55%), Gaps = 3/117 (2%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AIVG PNVGKS+L N L + A+V + G TRD L + GV ++DTAGI + Sbjct: 228 AIVGRPNVGKSSLLNYLTQSDKAIVTDVAGTTRDTLEEYVSVKGVPLELIDTAGIHHTDD 287 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + K ++++ A++ A L+L LID+ +T D A+ + K IIV NK D Sbjct: 288 -KVEKIGVERSKKALDRADLVLLLIDASQELTAEDKALIEETKDKK--RIIVLNKSD 341 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 42/153 (27%), Positives = 80/153 (52%), Gaps = 18/153 (11%) Query: 187 ENITSEGKSSVKNISKPLRIA-------------VVGRPNVGKSTLINRLLGYNRLLTGS 233 + +T KS +K I + L+ A +VGRPNVGKS+L+N L ++ + Sbjct: 195 KQMTDTAKSVIKKIDRLLKTAQEGKILRNGLATAIVGRPNVGKSSLLNYLTQSDKAIVTD 254 Query: 234 QSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLL 293 +G TRD++ + K P+E+ DTAG+ + +E+ V++S +++ + ++L+ Sbjct: 255 VAGTTRDTLEEYVSVKGVPLELIDTAGIHHTD---DKVEKIGVERSKKALDRADLVLLLI 311 Query: 294 DATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 DA+ +D +++ + +V LNK D+ Sbjct: 312 DASQELTAEDKALIEETKDKKRIIV--LNKSDL 342 >gi|206558831|ref|YP_002229591.1| tRNA modification GTPase TrmE [Burkholderia cenocepacia J2315] gi|198034868|emb|CAR50740.1| putative tRNA modification GTPase [Burkholderia cenocepacia J2315] Length = 464 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 50/188 (26%), Positives = 87/188 (46%), Gaps = 14/188 (7%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + L + + G+PNVGKS+L+N L G + +G TRD V+ + + P+ I DTA Sbjct: 223 LREGLSVVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTA 282 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R+ + +E+ + ++ + + + LLD+ D I + F G VV Sbjct: 283 GLRETE---DEVERIGIARTWSEIERADVVLHLLDSRTGMTADDETIA-ARFPAGVPVVR 338 Query: 320 ALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWK 379 LNK D+ +++ GD+ +S + G+G+D L +L I W+ Sbjct: 339 VLNKTDLTG---------VPACVEHPAAEGDLTEVHLSAKRGDGIDMLRAELLRIAG-WQ 388 Query: 380 TRITTSYL 387 YL Sbjct: 389 AGAEGVYL 396 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 39/123 (31%), Positives = 68/123 (55%), Gaps = 10/123 (8%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 ++ + G PNVGKS+L N L ++A+V G TRD++ + G+ +I+DTAG+ + Sbjct: 228 SVVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRET 287 Query: 64 KN----CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 ++ IA+ ++ I A ++L L+DS+ G+T D I + +P++ V N Sbjct: 288 EDEVERIGIARTWSE-----IERADVVLHLLDSRTGMTADDETIAARF-PAGVPVVRVLN 341 Query: 120 KMD 122 K D Sbjct: 342 KTD 344 >gi|149006354|ref|ZP_01830066.1| GTP-binding protein Era [Streptococcus pneumoniae SP18-BS74] gi|169834294|ref|YP_001694414.1| GTP-binding protein Era [Streptococcus pneumoniae Hungary19A-6] gi|221231732|ref|YP_002510884.1| GTP-binding protein Era homolog [Streptococcus pneumoniae ATCC 700669] gi|307127480|ref|YP_003879511.1| GTP-binding protein Era [Streptococcus pneumoniae 670-6B] gi|307704699|ref|ZP_07641598.1| GTP-binding protein Era [Streptococcus mitis SK597] gi|307706467|ref|ZP_07643276.1| GTP-binding protein Era [Streptococcus mitis SK321] gi|322376464|ref|ZP_08050957.1| GTP-binding protein Era [Streptococcus sp. M334] gi|226741241|sp|B1IBC9|ERA_STRPI RecName: Full=GTPase Era gi|254783666|sp|B8ZP66|ERA_STRPJ RecName: Full=GTPase Era gi|147762131|gb|EDK69093.1| GTP-binding protein Era [Streptococcus pneumoniae SP18-BS74] gi|168996796|gb|ACA37408.1| GTP-binding protein Era [Streptococcus pneumoniae Hungary19A-6] gi|220674192|emb|CAR68720.1| GTP-binding protein Era homolog [Streptococcus pneumoniae ATCC 700669] gi|306484542|gb|ADM91411.1| GTP-binding protein Era [Streptococcus pneumoniae 670-6B] gi|307618177|gb|EFN97335.1| GTP-binding protein Era [Streptococcus mitis SK321] gi|307621746|gb|EFO00784.1| GTP-binding protein Era [Streptococcus mitis SK597] gi|321282271|gb|EFX59278.1| GTP-binding protein Era [Streptococcus sp. M334] gi|332075585|gb|EGI86053.1| GTP-binding protein Era [Streptococcus pneumoniae GA17545] Length = 299 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 48/178 (26%), Positives = 86/178 (48%), Gaps = 5/178 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKST N ++ +K+A++ + TR+++ G + +DT GI K Sbjct: 8 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 ++ M + + E +LF++ + D I L+ +P+I+V NK+D Sbjct: 68 -TALGDFMVESAYSTLREVDTVLFMVPADEARGKGDDMIIERLKAAKVPVILVVNKIDKV 126 Query: 125 IAQRNFYEIYS----LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 + +I +DFKEIV ISA S L ++ + + + P + I ++ Sbjct: 127 HPDQLLSQIDDFRNQMDFKEIVPISALQGNNVSRLVDILSENLDEGFQYFPSDQITDH 184 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKST +N ++G + ++ TR+ + + I DT G+ KP Sbjct: 8 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +L V+ + ++R +T + ++ A K D I++ + V+L +NK D Sbjct: 68 ---TALGDFMVESAYSTLREVDTVLFMVPADEARGKGDDMIIERLKAAKVPVILVVNKID 124 Query: 326 MV 327 V Sbjct: 125 KV 126 >gi|91775217|ref|YP_544973.1| GTP-binding protein Era [Methylobacillus flagellatus KT] gi|91775361|ref|YP_545117.1| GTP-binding protein Era [Methylobacillus flagellatus KT] gi|91709204|gb|ABE49132.1| GTP-binding protein Era [Methylobacillus flagellatus KT] gi|91709348|gb|ABE49276.1| GTP-binding protein Era [Methylobacillus flagellatus KT] Length = 296 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 53/187 (28%), Positives = 88/187 (47%), Gaps = 16/187 (8%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AIVG PNVGKSTL N ++ K+++ TR RL G F VDT G Sbjct: 11 TVAIVGRPNVGKSTLLNHILGLKLSITSRKAQTTRHRLLGIHTTEDTQFLFVDTPGFQQK 70 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 ++ + +N ++E ++LF+I+ + D + L KN P+ +V NK D Sbjct: 71 HINALNRNLNRTVTQVLSEVDVVLFVIEP-MHLGDADRKVLQLL-PKNQPVFLVVNKADL 128 Query: 124 RIAQRNFYEI---YSLD--FKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPL-----E 173 + N + + L+ F I+ +SA+ +L EL + + ++ P P E Sbjct: 129 MGDKGNLLPLIQDFDLEFPFTGIIPVSAKKNLYLDELLAAV----REHLPEQPAIYGEDE 184 Query: 174 MIENNKR 180 + + N+R Sbjct: 185 LTDRNER 191 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 80/172 (46%), Gaps = 16/172 (9%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VGRPNVGKSTL+N +LG +T ++ TR + ++ DT G ++ Sbjct: 12 VAIVGRPNVGKSTLLNHILGLKLSITSRKAQTTRHRLLGIHTTEDTQFLFVDTPGFQQ-- 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL-RIVDSVFNTGHAVVLALNKW 324 + +L + + Q + + + +++ P D R V + V L +NK Sbjct: 70 KHINALNRNLNRTVTQVLSEVDVVLFVIE---PMHLGDADRKVLQLLPKNQPVFLVVNKA 126 Query: 325 DMVSDKLNLL---QDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 D++ DK NLL QD + P G I +S + LD+L+ +V E Sbjct: 127 DLMGDKGNLLPLIQDFDLE----FPFTG---IIPVSAKKNLYLDELLAAVRE 171 >gi|16079583|ref|NP_390407.1| GTP-binding protein Era [Bacillus subtilis subsp. subtilis str. 168] gi|221310453|ref|ZP_03592300.1| GTP-binding protein Era [Bacillus subtilis subsp. subtilis str. 168] gi|221314776|ref|ZP_03596581.1| GTP-binding protein Era [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319699|ref|ZP_03600993.1| GTP-binding protein Era [Bacillus subtilis subsp. subtilis str. JH642] gi|221323976|ref|ZP_03605270.1| GTP-binding protein Era [Bacillus subtilis subsp. subtilis str. SMY] gi|321312012|ref|YP_004204299.1| GTPase Era [Bacillus subtilis BSn5] gi|1168646|sp|P42182|ERA_BACSU RecName: Full=GTPase Era; AltName: Full=Bex protein gi|606745|gb|AAB59994.1| Bex [Bacillus subtilis] gi|1303826|dbj|BAA12482.1| YqfH [Bacillus subtilis] gi|2634961|emb|CAB14458.1| GTP-binding protein [Bacillus subtilis subsp. subtilis str. 168] gi|291484975|dbj|BAI86050.1| GTP-binding protein Era [Bacillus subtilis subsp. natto BEST195] gi|320018286|gb|ADV93272.1| GTPase Era [Bacillus subtilis BSn5] Length = 301 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 46/146 (31%), Positives = 75/146 (51%), Gaps = 5/146 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 ++I+G PNVGKST NR++ +K+A++ + P TR+++ G +DT GI K Sbjct: 11 VSIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKVQGVLTTGTSQTIFIDTPGIHKPK 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + M + + E LILF+I+++ G D I L+ + P+ ++ NK+D Sbjct: 71 H-KLGDFMMKVAQNTLKEVDLILFMINAEEGYGKGDEFIIEKLQTMSTPVFLIVNKIDKI 129 Query: 125 IAQRNFYEIYSLD----FKEIVEISA 146 + I FKEIV ISA Sbjct: 130 HPDQLLLLIDEYRKRYPFKEIVPISA 155 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 36/132 (27%), Positives = 64/132 (48%), Gaps = 4/132 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 ++++GRPNVGKST +NR++G + + TR+ V DT G+ KP Sbjct: 11 VSIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKVQGVLTTGTSQTIFIDTPGIHKPK 70 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L +K + +++ + + +++A + K D I++ + V L +NK D Sbjct: 71 H---KLGDFMMKVAQNTLKEVDLILFMINAEEGYGKGDEFIIEKLQTMSTPVFLIVNKID 127 Query: 326 MVS-DKLNLLQD 336 + D+L LL D Sbjct: 128 KIHPDQLLLLID 139 >gi|307709149|ref|ZP_07645608.1| GTP-binding protein Era [Streptococcus mitis SK564] gi|307620095|gb|EFN99212.1| GTP-binding protein Era [Streptococcus mitis SK564] Length = 299 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 48/178 (26%), Positives = 86/178 (48%), Gaps = 5/178 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKST N ++ +K+A++ + TR+++ G + +DT GI K Sbjct: 8 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 ++ M + + E +LF++ + D I L+ +P+I+V NK+D Sbjct: 68 -TALGDFMVESAYSTLREVDTVLFMVPADEARGKGDDMIIERLKAAKVPVILVVNKIDKV 126 Query: 125 IAQRNFYEIYS----LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 + +I +DFKEIV ISA S L ++ + + + P + I ++ Sbjct: 127 HPDQLLSQIDDFRNQMDFKEIVPISALQGNNVSRLVDILSENLDEGFQYFPSDQITDH 184 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKST +N ++G + ++ TR+ + + I DT G+ KP Sbjct: 8 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +L V+ + ++R +T + ++ A K D I++ + V+L +NK D Sbjct: 68 ---TALGDFMVESAYSTLREVDTVLFMVPADEARGKGDDMIIERLKAAKVPVILVVNKID 124 Query: 326 MV 327 V Sbjct: 125 KV 126 >gi|126657428|ref|ZP_01728587.1| GTP-binding protein Era [Cyanothece sp. CCY0110] gi|126621415|gb|EAZ92127.1| GTP-binding protein Era [Cyanothece sp. CCY0110] Length = 314 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 42/120 (35%), Positives = 63/120 (52%), Gaps = 1/120 (0%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + I+G PNVGKSTL N+L+ +K+A+ TR+RL G VDT GI Sbjct: 25 VGIIGRPNVGKSTLMNQLIGQKIAITSPVSQTTRNRLQGILTTEQAQIIFVDTPGIHK-P 83 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + ++ K + ++AIN +ILF++DS D I L+ N P+I+ NK D + Sbjct: 84 HHTLGKIIVKNAKMAINSVDVILFVVDSSVKSGGGDRYIIDLLKTINQPVILGLNKQDQQ 143 Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 47/168 (27%), Positives = 83/168 (49%), Gaps = 7/168 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 + ++GRPNVGKSTL+N+L+G +T S TR+ + + I DT G+ KP Sbjct: 25 VGIIGRPNVGKSTLMNQLIGQKIAITSPVSQTTRNRLQGILTTEQAQIIFVDTPGIHKPH 84 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +L + VK + ++ + + + ++D+++ D I+D + V+L LNK D Sbjct: 85 H---TLGKIIVKNAKMAINSVDVILFVVDSSVKSGGGDRYIIDLLKTINQPVILGLNKQD 141 Query: 326 MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 S+ + + T I++ I S TG GL+ L +++E Sbjct: 142 QQSEDYQQIDESYTNLIESY----HWPIIKFSALTGNGLETLQNTLIE 185 >gi|294789735|ref|ZP_06754966.1| tRNA modification GTPase TrmE [Simonsiella muelleri ATCC 29453] gi|294482301|gb|EFG29997.1| tRNA modification GTPase TrmE [Simonsiella muelleri ATCC 29453] Length = 457 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 62/240 (25%), Positives = 112/240 (46%), Gaps = 12/240 (5%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 T+ +VGAPNVGKS+L N L +A+V + G TRD + Q ++G+ +++DTAG+ Sbjct: 219 MTVVLVGAPNVGKSSLLNALAGDDVAIVTDIAGTTRDTVREQITLDGIPIHMIDTAGLRQ 278 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 N + K +++E A+ A + L LID G+ I F +N+ I + NK+D Sbjct: 279 -TNDIVEKIGIERSEKAVQNADIALILIDPDNGVNETTREIL-FRLPENLKRIEIQNKID 336 Query: 123 TRIAQRNFYEIYSLDFKE----IVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 R Q + S K ++++SA+ G L + + + L + Sbjct: 337 LRNEQPERVDNLSGSLKSGADTLIKLSAKTGAGLDLLKQALLAQIGWQGESEGLFLARTR 396 Query: 179 KRNEESPKE---NITSE-GKSSVKNISKPLRIAVVGRPNVGKSTLINRLLG--YNRLLTG 232 N + N+ ++ G ++ +++ LR+A + + + LLG ++R G Sbjct: 397 HLNALETAQFELNLAADCGHHQIELLAEHLRLAQMACSEITGEFTADDLLGVIFSRFCIG 456 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 30/95 (31%), Positives = 56/95 (58%), Gaps = 3/95 (3%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + + + +VG PNVGKS+L+N L G + + +G TRD+V PI + DTA Sbjct: 215 LREGMTVVLVGAPNVGKSSLLNALAGDDVAIVTDIAGTTRDTVREQITLDGIPIHMIDTA 274 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLD 294 G+R+ + I E + +++S ++V+ + ++L+D Sbjct: 275 GLRQTNDIVEKI---GIERSEKAVQNADIALILID 306 >gi|192361438|ref|YP_001984273.1| tRNA modification GTPase TrmE [Cellvibrio japonicus Ueda107] gi|190687603|gb|ACE85281.1| tRNA modification GTPase TrmE [Cellvibrio japonicus Ueda107] Length = 455 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 57/227 (25%), Positives = 105/227 (46%), Gaps = 23/227 (10%) Query: 149 DLGTSELHSVIFKIFKQKYPNHPLEMIENNK--RNEESPKENITSEGKSSVKN--ISKPL 204 DL S +H I+ +P ++ + + K R+ + + S K + + + + Sbjct: 158 DLVESLIHLRIYVEASIDFPEEEIDFLSDGKVARDLDDICHRLDSVFKEARQGALVRDGM 217 Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP 264 R+ + GRPN GKS+L+N L G + G TRD + + + P+ I DTAG+R Sbjct: 218 RVVIAGRPNAGKSSLLNALSGRESAIVTPIEGTTRDVLREHIHIEGMPLHIIDTAGLRDS 277 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVF----NTGHAVVLA 320 + +EQ ++++ ++ + ++L+D+ E D R++ F + H + L Sbjct: 278 P---DEVEQIGIQRAWSEIQQADRVLLLVDSRHTAET-DPRLIWPEFVDKLDDPHKITLV 333 Query: 321 LNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDL 367 NK D+ ++ L ++ R G Y+ IS TG G+D L Sbjct: 334 RNKIDLSGEQAGLFENTR----------GQDYLG-ISAATGSGMDAL 369 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/132 (33%), Positives = 66/132 (50%), Gaps = 6/132 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + I G PN GKS+L N L ++ A+V G TRD L I G+ +I+DTAG+ D Sbjct: 219 VVIAGRPNAGKSSLLNALSGRESAIVTPIEGTTRDVLREHIHIEGMPLHIIDTAGLRDSP 278 Query: 65 NCSIAKQMNDQTELA-INEAHLILFLIDSKAGITPYDHAI-TSFLRKKNIP--IIIVSNK 120 + +Q+ Q + I +A +L L+DS+ I F+ K + P I +V NK Sbjct: 279 DE--VEQIGIQRAWSEIQQADRVLLLVDSRHTAETDPRLIWPEFVDKLDDPHKITLVRNK 336 Query: 121 MDTRIAQRNFYE 132 +D Q +E Sbjct: 337 IDLSGEQAGLFE 348 >gi|125718416|ref|YP_001035549.1| GTP-binding protein Era [Streptococcus sanguinis SK36] gi|323351170|ref|ZP_08086826.1| GTP-binding protein Era [Streptococcus sanguinis VMC66] gi|189037679|sp|A3CP94|ERA_STRSV RecName: Full=GTPase Era gi|125498333|gb|ABN44999.1| Era-like GTP-binding protein, putative [Streptococcus sanguinis SK36] gi|322122394|gb|EFX94105.1| GTP-binding protein Era [Streptococcus sanguinis VMC66] gi|324991449|gb|EGC23382.1| GTP-binding protein Era [Streptococcus sanguinis SK353] gi|325687311|gb|EGD29333.1| GTP-binding protein Era [Streptococcus sanguinis SK72] gi|325690752|gb|EGD32753.1| GTP-binding protein Era [Streptococcus sanguinis SK115] gi|325696180|gb|EGD38071.1| GTP-binding protein Era [Streptococcus sanguinis SK160] gi|327470591|gb|EGF16047.1| GTP-binding protein Era [Streptococcus sanguinis SK330] gi|328946703|gb|EGG40841.1| GTP-binding protein Era [Streptococcus sanguinis SK1087] gi|332358996|gb|EGJ36817.1| GTP-binding protein Era [Streptococcus sanguinis SK49] gi|332362403|gb|EGJ40203.1| GTP-binding protein Era [Streptococcus sanguinis SK1056] Length = 299 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 49/179 (27%), Positives = 89/179 (49%), Gaps = 7/179 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKST N ++ +K+A++ + TR+++ G + +DT GI K Sbjct: 8 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM--- 121 ++ M + + E +LF++ + D I L+ +P+I+V NK+ Sbjct: 68 -TALGDFMVEAAYSTLREVDTVLFMVPADEPRGKGDDMIIERLKAAKVPVILVVNKIDKV 126 Query: 122 --DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 D +AQ + + +DFKEIV ISA S L ++ + ++ + P + I ++ Sbjct: 127 HPDQLLAQIDDFR-QQMDFKEIVPISALQGNNVSHLIDILSENLEEGFQYFPEDQITDH 184 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKST +N ++G + ++ TR+ + + I DT G+ KP Sbjct: 8 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +L V+ + ++R +T + ++ A P K D I++ + V+L +NK D Sbjct: 68 T---ALGDFMVEAAYSTLREVDTVLFMVPADEPRGKGDDMIIERLKAAKVPVILVVNKID 124 Query: 326 MV 327 V Sbjct: 125 KV 126 >gi|254246829|ref|ZP_04940150.1| hypothetical protein BCPG_01599 [Burkholderia cenocepacia PC184] gi|124871605|gb|EAY63321.1| hypothetical protein BCPG_01599 [Burkholderia cenocepacia PC184] Length = 464 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 50/188 (26%), Positives = 87/188 (46%), Gaps = 14/188 (7%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + L + + G+PNVGKS+L+N L G + +G TRD V+ + + P+ I DTA Sbjct: 223 LREGLSVVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTA 282 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R+ + +E+ + ++ + + + LLD+ D I + F G VV Sbjct: 283 GLRETE---DEVERIGIARTWSEIERADVVLHLLDSRTGMTADDETIA-ARFPAGVPVVR 338 Query: 320 ALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWK 379 LNK D+ +++ GD+ +S + G+G+D L +L I W+ Sbjct: 339 VLNKTDLTG---------VPACVEHPAAEGDLTEVHLSAKRGDGIDMLRAELLRIAG-WQ 388 Query: 380 TRITTSYL 387 YL Sbjct: 389 AGAEGVYL 396 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 39/123 (31%), Positives = 68/123 (55%), Gaps = 10/123 (8%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 ++ + G PNVGKS+L N L ++A+V G TRD++ + G+ +I+DTAG+ + Sbjct: 228 SVVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRET 287 Query: 64 KN----CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 ++ IA+ ++ I A ++L L+DS+ G+T D I + +P++ V N Sbjct: 288 EDEVERIGIARTWSE-----IERADVVLHLLDSRTGMTADDETIAARF-PAGVPVVRVLN 341 Query: 120 KMD 122 K D Sbjct: 342 KTD 344 >gi|323467508|gb|ADX71195.1| tRNA modification GTPase mnmE [Lactobacillus helveticus H10] Length = 467 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 45/117 (38%), Positives = 65/117 (55%), Gaps = 3/117 (2%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AIVG PNVGKS+L N L + A+V + G TRD L + GV ++DTAGI + Sbjct: 234 AIVGRPNVGKSSLLNYLTQSDKAIVTDVAGTTRDTLEEYVSVKGVPLELIDTAGIHHTDD 293 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + K ++++ A++ A L+L LID+ +T D A+ + K IIV NK D Sbjct: 294 -KVEKIGVERSKKALDRADLVLLLIDASQELTAEDKALIEETKDKK--RIIVLNKSD 347 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 70/123 (56%), Gaps = 5/123 (4%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 L A+VGRPNVGKS+L+N L ++ + +G TRD++ + K P+E+ DTAG+ Sbjct: 231 LATAIVGRPNVGKSSLLNYLTQSDKAIVTDVAGTTRDTLEEYVSVKGVPLELIDTAGIHH 290 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 + +E+ V++S +++ + ++L+DA+ +D +++ + +V LNK Sbjct: 291 TD---DKVEKIGVERSKKALDRADLVLLLIDASQELTAEDKALIEETKDKKRIIV--LNK 345 Query: 324 WDM 326 D+ Sbjct: 346 SDL 348 >gi|302390495|ref|YP_003826316.1| iron-only hydrogenase maturation protein HydF [Thermosediminibacter oceani DSM 16646] gi|302201123|gb|ADL08693.1| iron-only hydrogenase maturation protein HydF [Thermosediminibacter oceani DSM 16646] Length = 414 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 71/246 (28%), Positives = 115/246 (46%), Gaps = 21/246 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAI----INGVIFNIVDTAGI 60 IAI G N GKS+L N + + +A+V + G T D ++ +A+ I V+ I+DTAGI Sbjct: 17 IAIFGRRNAGKSSLINAITNQDIALVSSVAGTTTDPVF-KAMELLPIGPVV--IIDTAGI 73 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 D + + +T +N+ L + +ID G+T YD I +R+KNIP++ V NK Sbjct: 74 DD--EGELGELRIKKTYQVLNKTDLAVLIIDGGMGVTGYDLEILERIREKNIPVVGVINK 131 Query: 121 MDTRIAQRNFYEIYS--LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPL--EMIE 176 D E + L K +VE+SA G EL I + PL ++I Sbjct: 132 SDVAGYTPEEKETWEKRLGLK-LVEVSALKRQGIEELKREIINKAPSSFAERPLIGDLIA 190 Query: 177 NNKR-------NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRL 229 ++ +PK + + +++++ IAVV + K TL N + Sbjct: 191 PGDFVVLVVPIDKAAPKGRLILPQQQTIRDVLDHGAIAVVTKETELKETLKNLAKKPRIV 250 Query: 230 LTGSQS 235 +T SQ+ Sbjct: 251 VTDSQA 256 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 37/126 (29%), Positives = 60/126 (47%), Gaps = 5/126 (3%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKN-HPIEIFDTAGMR 262 L IA+ GR N GKS+LIN + + L S +G T D V + P+ I DTAG+ Sbjct: 15 LHIAIFGRRNAGKSSLINAITNQDIALVSSVAGTTTDPVFKAMELLPIGPVVIIDTAGID 74 Query: 263 KPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALN 322 + E +KK+ Q + + ++++D + DL I++ + VV +N Sbjct: 75 DEGELGEL----RIKKTYQVLNKTDLAVLIIDGGMGVTGYDLEILERIREKNIPVVGVIN 130 Query: 323 KWDMVS 328 K D+ Sbjct: 131 KSDVAG 136 >gi|291542200|emb|CBL15310.1| GTP-binding protein Era [Ruminococcus bromii L2-63] Length = 305 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 48/171 (28%), Positives = 87/171 (50%), Gaps = 9/171 (5%) Query: 199 NISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDT 258 N K IA+VGRPNVGKS+++NRL+G + S+ TR+ ++ + + FDT Sbjct: 6 NKDKSAFIAIVGRPNVGKSSILNRLMGQKIAIVSSKPQTTRNRITGVLTQGEYQLVFFDT 65 Query: 259 AGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVV 318 GM KP SL + V+ +SV + +++++A +L +++ + + Sbjct: 66 PGMHKPKT---SLGKYMVRSVNESVGGVDCCMLVVEAGKEPGDTELNLIEKFKSMEMPAI 122 Query: 319 LALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDI-YINTISGRTGEGLDDLM 368 LA+NK D + +K L+ K I + D + +S + G G+++L+ Sbjct: 123 LAINKIDTLKEKEELM-----KQIARYSLLYDFDAVVPVSAQDGNGMNELL 168 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 51/158 (32%), Positives = 80/158 (50%), Gaps = 10/158 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKS++ NRL+ +K+A+V + P TR+R+ G DT G+ K Sbjct: 13 IAIVGRPNVGKSSILNRLMGQKIAIVSSKPQTTRNRITGVLTQGEYQLVFFDTPGMHKPK 72 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKN--IPIIIVSNKMD 122 S+ K M ++ + +++ AG P D + + K+ +P I+ NK+D Sbjct: 73 T-SLGKYMVRSVNESVGGVDCCMLVVE--AGKEPGDTELNLIEKFKSMEMPAILAINKID 129 Query: 123 TRIAQRNFYEI---YSL--DFKEIVEISAEHDLGTSEL 155 T + + YSL DF +V +SA+ G +EL Sbjct: 130 TLKEKEELMKQIARYSLLYDFDAVVPVSAQDGNGMNEL 167 >gi|315612998|ref|ZP_07887909.1| GTP-binding protein Era [Streptococcus sanguinis ATCC 49296] gi|315315108|gb|EFU63149.1| GTP-binding protein Era [Streptococcus sanguinis ATCC 49296] Length = 299 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 48/178 (26%), Positives = 87/178 (48%), Gaps = 5/178 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKST N ++ +K+A++ + TR+++ G + +DT GI K Sbjct: 8 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 ++ M + + E +LF++ + D I L+ +P+I+V NK+D Sbjct: 68 -TALGDFMVESAYSTLREVDTVLFMVPADEPRGKGDDMIIERLKAAKVPVILVVNKIDKV 126 Query: 125 IAQRNFYEIYS----LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 + +I +DFKEIV ISA S L ++ + ++ + P + I ++ Sbjct: 127 HPDQLLSQIDDFRNQMDFKEIVPISALQGNNVSRLIDILSENLEEGFQYFPADQITDH 184 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKST +N ++G + ++ TR+ + + I DT G+ KP Sbjct: 8 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +L V+ + ++R +T + ++ A P K D I++ + V+L +NK D Sbjct: 68 ---TALGDFMVESAYSTLREVDTVLFMVPADEPRGKGDDMIIERLKAAKVPVILVVNKID 124 Query: 326 MV 327 V Sbjct: 125 KV 126 >gi|301058126|ref|ZP_07199178.1| GTP-binding protein Era [delta proteobacterium NaphS2] gi|300447758|gb|EFK11471.1| GTP-binding protein Era [delta proteobacterium NaphS2] Length = 294 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 48/147 (32%), Positives = 75/147 (51%), Gaps = 7/147 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 I IVG PNVGKSTL NR++ K+A+V P TR+R+ G + +DT GI + Sbjct: 8 IGIVGPPNVGKSTLLNRIMGTKLAIVSPKPQTTRNRILGVFHQHDCQMVFMDTPGIHRTR 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 ++ K M D A +E +IL ++++ P +I L+ P + NK+D R Sbjct: 68 T-ALHKSMVDAAFAAFHEVDMILMMVEADPRENPAVPSIIRGLKSIAKPRFLAINKID-R 125 Query: 125 IAQRNFYEIYS-----LDFKEIVEISA 146 + + + + + LDF I+ ISA Sbjct: 126 VKKEHILPLLADYGRKLDFDAIIPISA 152 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 44/166 (26%), Positives = 76/166 (45%), Gaps = 14/166 (8%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 I +VG PNVGKSTL+NR++G + + TR+ + ++ + + DT G+ Sbjct: 8 IGIVGPPNVGKSTLLNRIMGTKLAIVSPKPQTTRNRILGVFHQHDCQMVFMDTPGIH--- 64 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL-RIVDSVFNTGHAVVLALNKW 324 R +L + V + + + +++++A P E + I+ + + LA+NK Sbjct: 65 RTRTALHKSMVDAAFAAFHEVDMILMMVEAD-PRENPAVPSIIRGLKSIAKPRFLAINKI 123 Query: 325 DMVSDK--LNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLM 368 D V + L LL D K + I IS G G+D L+ Sbjct: 124 DRVKKEHILPLLADYGRKLDFD-------AIIPISALKGNGVDTLL 162 >gi|52081076|ref|YP_079867.1| GTP-binding protein Era [Bacillus licheniformis ATCC 14580] gi|52786455|ref|YP_092284.1| GTP-binding protein Era [Bacillus licheniformis ATCC 14580] gi|319644966|ref|ZP_07999199.1| GTP-binding protein era [Bacillus sp. BT1B_CT2] gi|52004287|gb|AAU24229.1| GTP-binding protein [Bacillus licheniformis ATCC 14580] gi|52348957|gb|AAU41591.1| Era [Bacillus licheniformis ATCC 14580] gi|317392775|gb|EFV73569.1| GTP-binding protein era [Bacillus sp. BT1B_CT2] Length = 301 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 46/147 (31%), Positives = 75/147 (51%), Gaps = 7/147 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 ++I+G PNVGKST NR++ +K+A++ + P TR+++ G + +DT GI K Sbjct: 11 VSIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKVQGVLTTDTSQTIFIDTPGIHKPK 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + M + E LILF+I+++ G D I L+ P+ ++ NK+D R Sbjct: 71 H-KLGDFMMKVAHNTLKEVDLILFMINAEEGYGKGDEFIIERLKGVKTPVFLIVNKID-R 128 Query: 125 IAQRNFYEIYS-----LDFKEIVEISA 146 I + F+EIV ISA Sbjct: 129 IHPDELLVLIDEYRTRYPFQEIVPISA 155 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 35/137 (25%), Positives = 66/137 (48%), Gaps = 5/137 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 ++++GRPNVGKST +NR++G + + TR+ V DT G+ KP Sbjct: 11 VSIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKVQGVLTTDTSQTIFIDTPGIHKPK 70 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L +K + +++ + + +++A + K D I++ + V L +NK D Sbjct: 71 H---KLGDFMMKVAHNTLKEVDLILFMINAEEGYGKGDEFIIERLKGVKTPVFLIVNKID 127 Query: 326 MV--SDKLNLLQDLRTK 340 + + L L+ + RT+ Sbjct: 128 RIHPDELLVLIDEYRTR 144 >gi|313893537|ref|ZP_07827107.1| tRNA modification GTPase TrmE [Veillonella sp. oral taxon 158 str. F0412] gi|313441980|gb|EFR60402.1| tRNA modification GTPase TrmE [Veillonella sp. oral taxon 158 str. F0412] Length = 461 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 46/152 (30%), Positives = 79/152 (51%), Gaps = 3/152 (1%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T IVG PN GKS+L N L+++ A+V + PG TRD + + G+ ++DTAGI D Sbjct: 225 TTVIVGRPNAGKSSLMNALLRENRAIVTDIPGTTRDSIEEYMTVEGISLRLIDTAGIRDT 284 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 ++ A + + IN+A ++L +ID +TP + I + + N +++ + + Sbjct: 285 QDTVEALGVERARDY-INKADIVLCVIDGSTPLTPEEIEILTSVSGLNTIVLLNKSDVAQ 343 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 + N E + F I ISA+ G++ L Sbjct: 344 VVTDENIKEHGT--FTAIERISAKEGEGSAVL 373 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 47/157 (29%), Positives = 79/157 (50%), Gaps = 16/157 (10%) Query: 208 VVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRI 267 +VGRPN GKS+L+N LL NR + G TRDS+ + + + DTAG+R Sbjct: 228 IVGRPNAGKSSLMNALLRENRAIVTDIPGTTRDSIEEYMTVEGISLRLIDTAGIRDTQDT 287 Query: 268 TESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMV 327 E+L V+++ + + + ++D + P +++ I+ SV +G ++ LNK Sbjct: 288 VEAL---GVERARDYINKADIVLCVIDGSTPLTPEEIEILTSV--SGLNTIVLLNK---- 338 Query: 328 SDKLNLLQDLRTKAIKNLPQIGDI-YINTISGRTGEG 363 SD ++ D +N+ + G I IS + GEG Sbjct: 339 SDVAQVVTD------ENIKEHGTFTAIERISAKEGEG 369 >gi|190575413|ref|YP_001973258.1| GTP-binding protein Era [Stenotrophomonas maltophilia K279a] gi|226741239|sp|B2FPX8|ERA_STRMK RecName: Full=GTPase Era gi|190013335|emb|CAQ46969.1| putative GTP-binding protein [Stenotrophomonas maltophilia K279a] Length = 298 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 50/171 (29%), Positives = 82/171 (47%), Gaps = 8/171 (4%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 ++A++G PNVGKSTL N LV K+++V N P TR RL G A +VDT G+ Sbjct: 11 SVAVIGRPNVGKSTLTNALVGAKVSIVSNRPQTTRHRLLGIATYPEGQLVLVDTPGLHKV 70 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + ++ + MN ++ L +I++ D + LR IP+++V NK+D Sbjct: 71 QKRAMNRVMNRAARGSLEGVDAGLLVIEA-GRWDEEDSLAFNVLRDAGIPVVLVVNKID- 128 Query: 124 RIAQRNFYEIY------SLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYP 168 R+ ++ + DF + ISA+ G L + K+ + P Sbjct: 129 RLKEKGALLPFLQQVTEGRDFAAVHPISAQKRNGLEALVRDVLKLLPEAPP 179 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 45/171 (26%), Positives = 87/171 (50%), Gaps = 11/171 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK-P 264 +AV+GRPNVGKSTL N L+G + ++ TR + + + + DT G+ K Sbjct: 12 VAVIGRPNVGKSTLTNALVGAKVSIVSNRPQTTRHRLLGIATYPEGQLVLVDTPGLHKVQ 71 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 R + + + S++ V + +++++A ++++D + + + G VVL +NK Sbjct: 72 KRAMNRVMNRAARGSLEGV---DAGLLVIEAG-RWDEEDSLAFNVLRDAGIPVVLVVNKI 127 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDI-YINTISGRTGEGLDDLMVSVLEI 374 D + +K LL L + + + D ++ IS + GL+ L+ VL++ Sbjct: 128 DRLKEKGALLPFL-----QQVTEGRDFAAVHPISAQKRNGLEALVRDVLKL 173 >gi|108804343|ref|YP_644280.1| GTP-binding protein Era [Rubrobacter xylanophilus DSM 9941] gi|108765586|gb|ABG04468.1| GTP-binding protein Era [Rubrobacter xylanophilus DSM 9941] Length = 301 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 91/172 (52%), Gaps = 15/172 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFN--IVDTAGIAD 62 +A+VG PNVGKSTL NRLV +K++++ + P TR + G + NG + VDT G Sbjct: 13 VAVVGRPNVGKSTLVNRLVGQKISIISSRPQTTRSPIRG--VRNGPGYQAVFVDTPGSQK 70 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLID---SKAGITPYDHAITSFLRKKNIPIIIVSN 119 ++ ++ +M ++ +++E+ ++LF++D +K G+ D + + + P I N Sbjct: 71 PRD-TLRARMQERVLDSLSESDVVLFMLDASQAKGGVGRGDRFVADLVARSRTPAIAAIN 129 Query: 120 KMDTRIAQRN-----FYEIYSL-DFKEIVEISAEHDLGTSELHSVIFKIFKQ 165 K+D + +R+ E+ L D++++ ISA L + ++ Q Sbjct: 130 KVDL-LPRRDDALPIVDEVRGLADWEDVFLISATAGTNIEPLMDAVVRLLPQ 180 Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 49/175 (28%), Positives = 87/175 (49%), Gaps = 16/175 (9%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +AVVGRPNVGKSTL+NRL+G + S+ TR + N + DT G +KP Sbjct: 13 VAVVGRPNVGKSTLVNRLVGQKISIISSRPQTTRSPIRGVRNGPGYQAVFVDTPGSQKPR 72 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIP---FEKQDLRIVDSVFNTGHAVVLALN 322 ++L + ++ + S+ + + +LDA+ + D + D V + + A+N Sbjct: 73 ---DTLRARMQERVLDSLSESDVVLFMLDASQAKGGVGRGDRFVADLVARSRTPAIAAIN 129 Query: 323 KWDMV---SDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEI 374 K D++ D L ++ ++R L D+++ IS G ++ LM +V+ + Sbjct: 130 KVDLLPRRDDALPIVDEVR-----GLADWEDVFL--ISATAGTNIEPLMDAVVRL 177 >gi|315284189|ref|ZP_07872091.1| tRNA modification GTPase TrmE [Listeria marthii FSL S4-120] gi|313612167|gb|EFR86407.1| tRNA modification GTPase TrmE [Listeria marthii FSL S4-120] Length = 425 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 39/132 (29%), Positives = 73/132 (55%), Gaps = 5/132 (3%) Query: 195 SSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIE 254 S K + + L A++GRPNVGKS+L+N+L+ + + +G TRD + N + P+ Sbjct: 179 SQGKILREGLATAIIGRPNVGKSSLLNQLIQEEKAIVTDIAGTTRDIIEEYVNVRGVPLR 238 Query: 255 IFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTG 314 + DTAG+R+ I E + V++S +++ + +++L+ +D + ++ G Sbjct: 239 LIDTAGIRETEDIVEKI---GVERSRKALADADFILLVLNQNEELTAEDEALFEAA--AG 293 Query: 315 HAVVLALNKWDM 326 H V+ LNK D+ Sbjct: 294 HNYVVVLNKTDL 305 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 45/158 (28%), Positives = 82/158 (51%), Gaps = 3/158 (1%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N+L++++ A+V + G TRD + + GV ++DTAGI + ++ Sbjct: 191 AIIGRPNVGKSSLLNQLIQEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAGIRETED 250 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 + K +++ A+ +A IL +++ +T D A+ N +++ ++T++ Sbjct: 251 I-VEKIGVERSRKALADADFILLVLNQNEELTAEDEALFEAAAGHNYVVVLNKTDLETKL 309 Query: 126 AQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 EI + IV S +D G L I +F Sbjct: 310 DIEKVREIAGEN--PIVATSLVNDEGLEALEEAIKTLF 345 >gi|291547599|emb|CBL20707.1| tRNA modification GTPase trmE [Ruminococcus sp. SR1/5] Length = 458 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 69/131 (52%), Gaps = 13/131 (9%) Query: 187 ENITSEGKSSVKN----------ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSG 236 E I +E K ++N I + +R ++G+PN GKS+L+N LLG +R + +G Sbjct: 195 EQIVAEEKEKIQNLLKTAGDGKIIQEGIRTVILGKPNAGKSSLLNLLLGEDRAIVTDIAG 254 Query: 237 ITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDAT 296 TRD + N ++I DTAG+R+ I E + V K+ + + + ++D++ Sbjct: 255 TTRDVLEEYINLHGITLKIADTAGIRQTEDIVEKI---GVSKAKEMAADADLILYVVDSS 311 Query: 297 IPFEKQDLRIV 307 +P ++ D I+ Sbjct: 312 VPLDENDEEII 322 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 45/157 (28%), Positives = 83/157 (52%), Gaps = 4/157 (2%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 I+G PN GKS+L N L+ + A+V + G TRD L ++G+ I DTAGI ++ Sbjct: 226 ILGKPNAGKSSLLNLLLGEDRAIVTDIAGTTRDVLEEYINLHGITLKIADTAGIRQTEDI 285 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 ++ E+A + A LIL+++DS + D I L++K ++ +++ I Sbjct: 286 VEKIGVSKAKEMAAD-ADLILYVVDSSVPLDENDEEIIKILQEKKTIVLYSKTDLESAI- 343 Query: 127 QRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 + ++ S + ++ ISA+ + G ++L I ++F Sbjct: 344 --DIEDLKSRINQPVIPISAKEETGITDLEEKIREMF 378 >gi|260913783|ref|ZP_05920259.1| GTP-binding protein Era [Pasteurella dagmatis ATCC 43325] gi|260632322|gb|EEX50497.1| GTP-binding protein Era [Pasteurella dagmatis ATCC 43325] Length = 306 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 50/176 (28%), Positives = 83/176 (47%), Gaps = 6/176 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N+++ +K+++ TR R+ G VDT G+ + Sbjct: 17 IAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHIEE 76 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN AI + LI+F++D D + + LR P+++ NK+D Sbjct: 77 KRAINRLMNRAASSAIGDVDLIIFVVDG-THWNEDDEMVLNKLRAAKTPVVLAINKIDNI 135 Query: 125 IAQRNFY----EIYS-LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 + E+ S F +V ISA+ +EL ++ ++ + P E + Sbjct: 136 KNKEEMLPFITELSSKFGFAHVVPISAQSGKNVNELEKIVRNSLREGIHHFPEEYV 191 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 83/164 (50%), Gaps = 11/164 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS-VSISWNWKNHPIEIFDTAGMR-K 263 IA+VGRPNVGKSTL+N++LG +T ++ TR V I I + DT G+ + Sbjct: 17 IAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIHTEGAYQAIYV-DTPGLHIE 75 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 R L + ++ V + I ++D T + + D +++ + VVLA+NK Sbjct: 76 EKRAINRLMNRAASSAIGDV---DLIIFVVDGT-HWNEDDEMVLNKLRAAKTPVVLAINK 131 Query: 324 WDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDL 367 D + +K +L + + K G ++ IS ++G+ +++L Sbjct: 132 IDNIKNKEEMLPFITELSSK----FGFAHVVPISAQSGKNVNEL 171 >gi|218781965|ref|YP_002433283.1| tRNA modification GTPase TrmE [Desulfatibacillum alkenivorans AK-01] gi|218763349|gb|ACL05815.1| tRNA modification GTPase TrmE [Desulfatibacillum alkenivorans AK-01] Length = 463 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 68/119 (57%), Gaps = 5/119 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AIVG PNVGKS+L N L ++ ++V PG TRD + +I G+ F + DTAG+ + Sbjct: 232 AIVGRPNVGKSSLMNALAGQERSIVTETPGATRDVIREPVLIRGLHFTLSDTAGL---RT 288 Query: 66 CSIAKQM--NDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 S A +M + + A+ E+ L++ ++++ + ++P D + +++V NKMD Sbjct: 289 SSDAVEMIGVQRAKDAMGESDLVMLVVEAGSDLSPEDQELLHQAEHSCNRVLMVYNKMD 347 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 81/164 (49%), Gaps = 16/164 (9%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 LR A+VGRPNVGKS+L+N L G R + G TRD + + + DTAG+R Sbjct: 229 LRAAIVGRPNVGKSSLMNALAGQERSIVTETPGATRDVIREPVLIRGLHFTLSDTAGLRT 288 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 S +++E V+++ ++ + +++++A +D ++ H + N+ Sbjct: 289 SS---DAVEMIGVQRAKDAMGESDLVMLVVEAGSDLSPEDQELL-------HQAEHSCNR 338 Query: 324 WDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDL 367 MV +K++L +++ + +S +TG+GLD L Sbjct: 339 VLMVYNKMDLHPGFIPSPVRDYAPV------AVSAKTGQGLDGL 376 >gi|161508218|ref|YP_001578189.1| tRNA modification GTPase TrmE [Lactobacillus helveticus DPC 4571] gi|205415770|sp|A8YTQ7|MNME_LACH4 RecName: Full=tRNA modification GTPase mnmE gi|160349207|gb|ABX27881.1| Thiophene and furan oxidation protein [Lactobacillus helveticus DPC 4571] Length = 461 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 45/117 (38%), Positives = 65/117 (55%), Gaps = 3/117 (2%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AIVG PNVGKS+L N L + A+V + G TRD L + GV ++DTAGI + Sbjct: 228 AIVGRPNVGKSSLLNYLTQSDKAIVTDVAGTTRDTLEEYVSVKGVPLELIDTAGIHHTDD 287 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + K ++++ A++ A L+L LID+ +T D A+ + K IIV NK D Sbjct: 288 -KVEKIGVERSKKALDRADLVLLLIDASQELTAEDKALIEETKDKK--RIIVLNKSD 341 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 70/123 (56%), Gaps = 5/123 (4%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 L A+VGRPNVGKS+L+N L ++ + +G TRD++ + K P+E+ DTAG+ Sbjct: 225 LATAIVGRPNVGKSSLLNYLTQSDKAIVTDVAGTTRDTLEEYVSVKGVPLELIDTAGIHH 284 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 + +E+ V++S +++ + ++L+DA+ +D +++ + +V LNK Sbjct: 285 TD---DKVEKIGVERSKKALDRADLVLLLIDASQELTAEDKALIEETKDKKRIIV--LNK 339 Query: 324 WDM 326 D+ Sbjct: 340 SDL 342 >gi|149280420|ref|ZP_01886540.1| tRNA modification GTPase TrmE [Pedobacter sp. BAL39] gi|149228834|gb|EDM34233.1| tRNA modification GTPase TrmE [Pedobacter sp. BAL39] Length = 456 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 49/171 (28%), Positives = 83/171 (48%), Gaps = 19/171 (11%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 I + + + GRPN GKSTL+N LL +R + +G TRD++ N + DTA Sbjct: 215 IKEGINTVIAGRPNAGKSTLLNALLNEDRAIVSDIAGTTRDTIEELLNINGINFRLIDTA 274 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDA---TIPFEKQDLRIVDSVFNTGHA 316 G+R+ T+++E V+K+MQ + + L D TI K D+ S+ G Sbjct: 275 GIREA---TDTIEAIGVEKTMQKINQSAVLVYLFDVVNLTIDQIKDDIA---SLHKPGLT 328 Query: 317 VVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDL 367 + NK D+ S+++ +K+L D++ IS + E +++L Sbjct: 329 FIAVANKIDLSSEEV----------LKSLDLPSDVHFIAISAKENEKVEEL 369 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 53/172 (30%), Positives = 85/172 (49%), Gaps = 12/172 (6%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 I G PN GKSTL N L+ + A+V + G TRD + ING+ F ++DTAGI + + Sbjct: 223 IAGRPNAGKSTLLNALLNEDRAIVSDIAGTTRDTIEELLNINGINFRLIDTAGIREATD- 281 Query: 67 SIAKQMNDQTELAINEAHLILFLID-SKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 +I ++T IN++ ++++L D I I S L K + I V+NK+D Sbjct: 282 TIEAIGVEKTMQKINQSAVLVYLFDVVNLTIDQIKDDIAS-LHKPGLTFIAVANKIDLSS 340 Query: 126 AQRNFYEIYSLDFK---EIVEISAEHDLGTSELHSVIF--KIFKQKYPNHPL 172 + + SLD + ISA+ + EL +++ + Q NH + Sbjct: 341 EEV----LKSLDLPSDVHFIAISAKENEKVEELKQLVYDAAVGDQLSANHTM 388 >gi|81428488|ref|YP_395488.1| putative GTP-binding protein [Lactobacillus sakei subsp. sakei 23K] gi|78610130|emb|CAI55179.1| Putative GTP-binding protein [Lactobacillus sakei subsp. sakei 23K] Length = 300 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 48/147 (32%), Positives = 72/147 (48%), Gaps = 7/147 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKST NR++ +K+A++ + TR+++ G + VDT GI Sbjct: 10 VAIVGRPNVGKSTFMNRMIGEKIAIMSSKAQTTRNKIQGIYTDDNAQIVFVDTPGIHKPH 69 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N + + M+ NE ILF+I P D I L+ P+ +V NK+D Sbjct: 70 N-ELDEYMDQAALSTFNEVDAILFMISGVDKKGPGDQYIMDQLKNVKKPVYLVVNKIDA- 127 Query: 125 IAQRNFYEI-----YSLDFKEIVEISA 146 I + + + LDFK + ISA Sbjct: 128 IHPDDLLPMIEQYRHELDFKAVYPISA 154 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/135 (27%), Positives = 66/135 (48%), Gaps = 5/135 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VGRPNVGKST +NR++G + S++ TR+ + + N I DT G+ KP Sbjct: 10 VAIVGRPNVGKSTFMNRMIGEKIAIMSSKAQTTRNKIQGIYTDDNAQIVFVDTPGIHKPH 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L++ + ++ + + + ++ D I+D + N V L +NK D Sbjct: 70 N---ELDEYMDQAALSTFNEVDAILFMISGVDKKGPGDQYIMDQLKNVKKPVYLVVNKID 126 Query: 326 MV--SDKLNLLQDLR 338 + D L +++ R Sbjct: 127 AIHPDDLLPMIEQYR 141 >gi|251791906|ref|YP_003006626.1| GTP-binding protein Era [Aggregatibacter aphrophilus NJ8700] gi|247533293|gb|ACS96539.1| GTP-binding protein Era [Aggregatibacter aphrophilus NJ8700] Length = 302 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 51/183 (27%), Positives = 84/183 (45%), Gaps = 20/183 (10%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N+++ +K+++ TR R+ G VDT G+ K Sbjct: 13 IAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIKTEGAYQEIYVDTPGLHIEK 72 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD-- 122 ++ + MN AI + L++F++D D + + LRK P+++ NK+D Sbjct: 73 KRALNRLMNRAASSAITDVDLVIFVVDG-THWNDDDEMVLNKLRKTKAPVVLAINKIDNI 131 Query: 123 ----------TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPL 172 T I Q+ +F +IV ISAE + ++ K + + P Sbjct: 132 KNKDDLLPFITEITQK-------FNFADIVPISAEKGNNLDAIEKIVRKSLRPGVHHFPE 184 Query: 173 EMI 175 + + Sbjct: 185 DYV 187 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 40/130 (30%), Positives = 71/130 (54%), Gaps = 5/130 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIF-DTAGMRKP 264 IA+VGRPNVGKSTL+N++LG +T ++ TR + + + EI+ DT G+ Sbjct: 13 IAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRI-VGIKTEGAYQEIYVDTPGLHIE 71 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 + +L + + + ++ + I ++D T + D +++ + T VVLA+NK Sbjct: 72 KK--RALNRLMNRAASSAITDVDLVIFVVDGT-HWNDDDEMVLNKLRKTKAPVVLAINKI 128 Query: 325 DMVSDKLNLL 334 D + +K +LL Sbjct: 129 DNIKNKDDLL 138 >gi|77968732|gb|ABB10112.1| tRNA modification GTPase trmE [Burkholderia sp. 383] Length = 489 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 50/188 (26%), Positives = 87/188 (46%), Gaps = 14/188 (7%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + L + + G+PNVGKS+L+N L G + +G TRD V+ + + P+ I DTA Sbjct: 248 LREGLSVVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTA 307 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R+ + +E+ + ++ + + + LLD+ D I + F G VV Sbjct: 308 GLRE---TEDEVERIGIARTWSEIERADVVLHLLDSRNGMTADDETIA-ARFPGGVPVVR 363 Query: 320 ALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWK 379 LNK D+ +++ GD+ +S + G+G+D L +L I W+ Sbjct: 364 VLNKTDLTG---------VAACVEHPAAEGDLTEVHLSAKRGDGIDMLRAELLRIAG-WQ 413 Query: 380 TRITTSYL 387 YL Sbjct: 414 AGAEGVYL 421 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 49/164 (29%), Positives = 85/164 (51%), Gaps = 12/164 (7%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 ++ + G PNVGKS+L N L ++A+V G TRD++ + G+ +I+DTAG+ + Sbjct: 253 SVVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRET 312 Query: 64 KN----CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 ++ IA+ ++ I A ++L L+DS+ G+T D I + +P++ V N Sbjct: 313 EDEVERIGIARTWSE-----IERADVVLHLLDSRNGMTADDETIAARF-PGGVPVVRVLN 366 Query: 120 KMD-TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKI 162 K D T +A + D E V +SA+ G L + + +I Sbjct: 367 KTDLTGVAACVEHPAAEGDLTE-VHLSAKRGDGIDMLRAELLRI 409 >gi|145638177|ref|ZP_01793787.1| tRNA modification GTPase TrmE [Haemophilus influenzae PittII] gi|145272506|gb|EDK12413.1| tRNA modification GTPase TrmE [Haemophilus influenzae PittII] Length = 452 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 77/150 (51%), Gaps = 10/150 (6%) Query: 167 YPNHPLEM-----IENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLIN 221 +P+ ++ IE N R + E++ SE K + + +++ + GRPN GKS+L+N Sbjct: 174 FPDEEIDFLADGKIEANLRGIINQLEDVRSEAKQG-SILREGMKVVIAGRPNAGKSSLLN 232 Query: 222 RLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQ 281 L G+ + +G TRD + + P+ I DTAG+R T+ +E+ + ++ Sbjct: 233 ALAGHEAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRNA---TDEVERIGISRAWT 289 Query: 282 SVRTCETTIVLLDATIPFEKQDLRIVDSVF 311 + + I++LD++ P E DL V S F Sbjct: 290 EIEQADRIILMLDSSDP-ESADLSKVRSEF 318 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/140 (30%), Positives = 71/140 (50%), Gaps = 9/140 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + I G PN GKS+L N L + A+V + G TRD L I+G+ +I+DTAG+ + Sbjct: 217 VVIAGRPNAGKSSLLNALAGHEAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRNAT 276 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITS-FLRK--KNIPIIIVSNKM 121 + + + + I +A I+ ++DS + + S FL K +P+ IV NK+ Sbjct: 277 D-EVERIGISRAWTEIEQADRIILMLDSSDPESADLSKVRSEFLAKLPSTLPVTIVRNKI 335 Query: 122 D-----TRIAQRNFYEIYSL 136 D +++ Y+I SL Sbjct: 336 DLNGEQASESEQGGYQIISL 355 >gi|68249586|ref|YP_248698.1| tRNA modification GTPase TrmE [Haemophilus influenzae 86-028NP] gi|81335985|sp|Q4QLQ9|MNME_HAEI8 RecName: Full=tRNA modification GTPase mnmE gi|68057785|gb|AAX88038.1| probable tRNA modification GTPase TrmE [Haemophilus influenzae 86-028NP] Length = 452 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 44/150 (29%), Positives = 76/150 (50%), Gaps = 10/150 (6%) Query: 167 YPNHPLEM-----IENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLIN 221 +P+ ++ IE N R + EN+ SE K + + +++ + GRPN GKS+L+N Sbjct: 174 FPDEEIDFLADGKIEANLRGIINQLENVRSEAKQG-SILREGMKVVIAGRPNAGKSSLLN 232 Query: 222 RLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQ 281 L G + +G TRD + + P+ I DTAG+R T+ +E+ + ++ Sbjct: 233 ALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDA---TDEVERIGISRAWT 289 Query: 282 SVRTCETTIVLLDATIPFEKQDLRIVDSVF 311 + + I++LD++ P E DL V S F Sbjct: 290 EIEQADRIILMLDSSDP-ESADLSKVRSEF 318 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/140 (31%), Positives = 72/140 (51%), Gaps = 9/140 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + I G PN GKS+L N L ++ A+V + G TRD L I+G+ +I+DTAG+ D Sbjct: 217 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAT 276 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITS-FLRK--KNIPIIIVSNKM 121 + + + + I +A I+ ++DS + + S FL K +P+ IV NK+ Sbjct: 277 D-EVERIGISRAWTEIEQADRIILMLDSSDPESADLSKVRSEFLAKLPSTLPVTIVRNKI 335 Query: 122 D-----TRIAQRNFYEIYSL 136 D +++ Y+I SL Sbjct: 336 DLNGEQASESEQGGYQIISL 355 >gi|309800252|ref|ZP_07694428.1| GTP-binding protein Era [Streptococcus infantis SK1302] gi|308116105|gb|EFO53605.1| GTP-binding protein Era [Streptococcus infantis SK1302] Length = 299 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 48/179 (26%), Positives = 89/179 (49%), Gaps = 7/179 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKST N ++ +K+A++ + TR+++ G + +DT GI K Sbjct: 8 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM--- 121 ++ M + + E ++F++ + D I L+ +P+I+V NK+ Sbjct: 68 -TALGDFMVESAYSTLREVDTVIFMVPADEARGKGDDMIIERLKAAKVPVILVVNKIDKV 126 Query: 122 --DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 D +AQ + + +DFKEIV ISA S L ++ + ++ + P + I ++ Sbjct: 127 HPDQLLAQIDDFR-NQMDFKEIVPISALQGNNVSRLIDILSENLEEGFQYFPADQITDH 184 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKST +N ++G + ++ TR+ + + I DT G+ KP Sbjct: 8 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +L V+ + ++R +T I ++ A K D I++ + V+L +NK D Sbjct: 68 ---TALGDFMVESAYSTLREVDTVIFMVPADEARGKGDDMIIERLKAAKVPVILVVNKID 124 Query: 326 MV 327 V Sbjct: 125 KV 126 >gi|323141988|ref|ZP_08076839.1| ribosome biogenesis GTPase Era [Phascolarctobacterium sp. YIT 12067] gi|322413520|gb|EFY04388.1| ribosome biogenesis GTPase Era [Phascolarctobacterium sp. YIT 12067] Length = 287 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 49/170 (28%), Positives = 86/170 (50%), Gaps = 10/170 (5%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 +VG PNVGKSTL N L+ +K+A++ + P TR+++ + +DT GI ++ Sbjct: 1 MVGRPNVGKSTLTNSLIGEKIAIMSDRPQTTRNKIMCIMNTDNAQIMFLDTPGIHKPQH- 59 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 + + M E + E ++LF++D+ + I + L+K P+I+V NK+D Sbjct: 60 KLGEYMVRTAESTLQEVDVVLFVVDATEKRGAGEDYILNLLQKVKTPVILVVNKIDKLAD 119 Query: 127 QRNFYEIYS-----LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHP 171 ++ ++I F IV +SA +D SE ++ +I K P P Sbjct: 120 KQKLFQIMEGYNKLYKFAAIVPVSALND---SEFPGLVQEITKH-LPEGP 165 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 39/128 (30%), Positives = 64/128 (50%), Gaps = 3/128 (2%) Query: 208 VVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRI 267 +VGRPNVGKSTL N L+G + + TR+ + N N I DT G+ KP Sbjct: 1 MVGRPNVGKSTLTNSLIGEKIAIMSDRPQTTRNKIMCIMNTDNAQIMFLDTPGIHKPQH- 59 Query: 268 TESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMV 327 L + V+ + +++ + + ++DAT + I++ + V+L +NK D + Sbjct: 60 --KLGEYMVRTAESTLQEVDVVLFVVDATEKRGAGEDYILNLLQKVKTPVILVVNKIDKL 117 Query: 328 SDKLNLLQ 335 +DK L Q Sbjct: 118 ADKQKLFQ 125 >gi|260200777|ref|ZP_05768268.1| GTP-binding protein EngA [Mycobacterium tuberculosis T46] gi|289443172|ref|ZP_06432916.1| GTP-binding protein EngA [Mycobacterium tuberculosis T46] gi|289416091|gb|EFD13331.1| GTP-binding protein EngA [Mycobacterium tuberculosis T46] Length = 149 Score = 67.8 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 48/141 (34%), Positives = 73/141 (51%), Gaps = 6/141 (4%) Query: 319 LALNKWDMV-SDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKL 377 +A NKWD+V D+ LLQ + + L Q+ IS +TG + L+ ++ + Sbjct: 1 MAYNKWDLVDEDRRELLQ---REIDRELVQVRWAQRVNISAKTGRAVHKLVPAMEDALAS 57 Query: 378 WKTRITTSYLNSWLQKTQLQNPPPTIFNRYNRLKYITQIQSSPPSFLIFCTFPNKIPESY 437 W TRI T LN+WL + PPP + R+ + TQ + PP+F++F T + Y Sbjct: 58 WDTRIATGPLNTWLTEVTAATPPPVRGGKQPRILFATQATARPPTFVLFTT--GFLEAGY 115 Query: 438 KRYLINRLRINFSLSGIPIRM 458 +R+L RLR F G PIR+ Sbjct: 116 RRFLERRLRETFGFDGSPIRV 136 >gi|325294202|ref|YP_004280066.1| tRNA modification GTPase TrmE [Agrobacterium sp. H13-3] gi|325062055|gb|ADY65746.1| tRNA modification GTPase TrmE [Agrobacterium sp. H13-3] Length = 443 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 47/168 (27%), Positives = 81/168 (48%), Gaps = 26/168 (15%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 I ++A+VG PN GKSTL+N L G + + +G TRD +S+ N + + IFDTA Sbjct: 217 IRDGFKVALVGEPNAGKSTLLNALSGRDVAIVTDIAGTTRDVLSVDINLDGYLVRIFDTA 276 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R+ + +E++ V++++ + T + ++L D ++ + S+ N H Sbjct: 277 GIRETQDV---VEKEGVRRAVLTAETADLILILQDNDSTLKQS----IISLENARHL--- 326 Query: 320 ALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDL 367 LRTK + + ++ IS R G GLD+L Sbjct: 327 ----------------HLRTKTAISSSTVDAVFDLAISAREGVGLDEL 358 Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 1/89 (1%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + +A+VG PN GKSTL N L + +A+V + G TRD L ++G + I DTAGI + Sbjct: 221 FKVALVGEPNAGKSTLLNALSGRDVAIVTDIAGTTRDVLSVDINLDGYLVRIFDTAGIRE 280 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLID 91 ++ + K+ + L A LIL L D Sbjct: 281 TQDV-VEKEGVRRAVLTAETADLILILQD 308 >gi|282900463|ref|ZP_06308412.1| Small GTP-binding protein [Cylindrospermopsis raciborskii CS-505] gi|281194656|gb|EFA69604.1| Small GTP-binding protein [Cylindrospermopsis raciborskii CS-505] Length = 308 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 48/152 (31%), Positives = 77/152 (50%), Gaps = 6/152 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 I I+G PNVGKSTL N+L+ +K+A+ TR+RL G VDT GI Sbjct: 19 IGIIGRPNVGKSTLMNQLIGQKIAITSPVAQTTRNRLRGILTREKAQLIFVDTPGIHK-P 77 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + + + ++AI ++LF++D A D I L K IP+I+ NK+D + Sbjct: 78 HHPLGEVLVQNAKIAITSVDVVLFVVDGTAVCGGGDRFIVDLLTKCEIPVIMGINKIDQQ 137 Query: 125 IAQ-----RNFYEIYSLDFKEIVEISAEHDLG 151 A+ ++ E+ + +IV+ SA + G Sbjct: 138 PAEAEKIDESYRELARENQWQIVKFSALENQG 169 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 3/120 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 I ++GRPNVGKSTL+N+L+G +T + TR+ + + + DT G+ KP Sbjct: 19 IGIIGRPNVGKSTLMNQLIGQKIAITSPVAQTTRNRLRGILTREKAQLIFVDTPGIHKPH 78 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + V+ + ++ + + + ++D T D IVD + V++ +NK D Sbjct: 79 H---PLGEVLVQNAKIAITSVDVVLFVVDGTAVCGGGDRFIVDLLTKCEIPVIMGINKID 135 >gi|330828483|ref|YP_004391435.1| GTP-binding protein era [Aeromonas veronii B565] gi|328803619|gb|AEB48818.1| GTP-binding protein era [Aeromonas veronii B565] Length = 299 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 43/148 (29%), Positives = 75/148 (50%), Gaps = 6/148 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N+L+ +K+++ P TR R+ G + VDT G+ + Sbjct: 10 VAIVGRPNVGKSTLLNKLLGQKVSITSKKPQTTRHRILGIDTEDNYQTIYVDTPGLHIEE 69 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN ++ + +++F++D T D + LR P+++ NK+D Sbjct: 70 KRAINRLMNRAATSSLGDVAMVVFMVDG-THWTKDDEMVLGKLRNLKCPVVLAVNKIDNV 128 Query: 125 IAQRNF-----YEIYSLDFKEIVEISAE 147 + + + ++F I+ ISAE Sbjct: 129 KEKEDLLPHLEWLGQQMNFAHILPISAE 156 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/133 (33%), Positives = 66/133 (49%), Gaps = 5/133 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMR-KP 264 +A+VGRPNVGKSTL+N+LLG +T + TR + N+ DT G+ + Sbjct: 10 VAIVGRPNVGKSTLLNKLLGQKVSITSKKPQTTRHRILGIDTEDNYQTIYVDTPGLHIEE 69 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 R L + S+ V + ++D T + K D ++ + N VVLA+NK Sbjct: 70 KRAINRLMNRAATSSLGDVAMV---VFMVDGT-HWTKDDEMVLGKLRNLKCPVVLAVNKI 125 Query: 325 DMVSDKLNLLQDL 337 D V +K +LL L Sbjct: 126 DNVKEKEDLLPHL 138 >gi|304373365|ref|YP_003856574.1| tRNA modification GTPase mnmE [Mycoplasma hyorhinis HUB-1] gi|304309556|gb|ADM22036.1| tRNA modification GTPase mnmE [Mycoplasma hyorhinis HUB-1] Length = 444 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 56/176 (31%), Positives = 92/176 (52%), Gaps = 15/176 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKS+L N L+++ ++V + G TRD + +++ ++F +VDTAG+ K Sbjct: 220 VALVGTPNVGKSSLLNALIEQDKSIVSDVAGTTRDVVEASFVLSDIVFKLVDTAGVRKAK 279 Query: 65 NCSIAKQMNDQTELA-INEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 N +Q+ + L I +A +++ +ID+ +D I KN I V NK D Sbjct: 280 NK--IEQIGIKKSLEQIEKASIVIHIIDATKQENEFDKLIQE--HSKNKDYIKVYNKKD- 334 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNK 179 + NF D + + ISA+H S+L S + K F K + E+I N + Sbjct: 335 -LNPSNF------DASDKILISAKHK-DISQLESYMKKHFVNKISENE-EIISNTR 381 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 36/107 (33%), Positives = 61/107 (57%), Gaps = 3/107 (2%) Query: 190 TSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWK 249 T E + I + +++A+VG PNVGKS+L+N L+ ++ + +G TRD V S+ Sbjct: 204 TIEASERSRIIFEGIKVALVGTPNVGKSSLLNALIEQDKSIVSDVAGTTRDVVEASFVLS 263 Query: 250 NHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDAT 296 + ++ DTAG+RK +EQ +KKS++ + I ++DAT Sbjct: 264 DIVFKLVDTAGVRKAKN---KIEQIGIKKSLEQIEKASIVIHIIDAT 307 >gi|270292907|ref|ZP_06199118.1| GTP-binding protein Era [Streptococcus sp. M143] gi|270278886|gb|EFA24732.1| GTP-binding protein Era [Streptococcus sp. M143] Length = 299 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 48/178 (26%), Positives = 87/178 (48%), Gaps = 5/178 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKST N ++ +K+A++ + TR+++ G + +DT GI K Sbjct: 8 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 ++ M + + E +LF++ + D I L+ +P+I+V NK+D Sbjct: 68 -TALGDFMVESAYSTLREVDTVLFMVPADEPRGKGDDMIIERLKAAKVPVILVVNKIDKV 126 Query: 125 IAQRNFYEIYS----LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 + +I +DFKEIV ISA S L ++ + ++ + P + I ++ Sbjct: 127 HPDQLLAQIDDFRNQMDFKEIVPISALQGNNVSRLVDILSENLEEGFQYFPSDQITDH 184 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKST +N ++G + ++ TR+ + + I DT G+ KP Sbjct: 8 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +L V+ + ++R +T + ++ A P K D I++ + V+L +NK D Sbjct: 68 ---TALGDFMVESAYSTLREVDTVLFMVPADEPRGKGDDMIIERLKAAKVPVILVVNKID 124 Query: 326 MV 327 V Sbjct: 125 KV 126 >gi|152977683|ref|YP_001377200.1| tRNA modification GTPase TrmE [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|189036194|sp|A7GVP7|MNME_BACCN RecName: Full=tRNA modification GTPase mnmE gi|152026435|gb|ABS24205.1| tRNA modification GTPase TrmE [Bacillus cytotoxicus NVH 391-98] Length = 458 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 46/159 (28%), Positives = 86/159 (54%), Gaps = 5/159 (3%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N LV++K A+V + G TRD + + GV ++DTAGI + ++ Sbjct: 224 AIIGRPNVGKSSLLNSLVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLRLIDTAGIRETED 283 Query: 66 CSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 I +Q+ ++++ +++A L+L +++ +T D + ++ K+ +I+ + + Sbjct: 284 --IVEQIGVERSKEMMSQADLVLIVVNYSEPLTNEDEELFRAVQGKDFIVIVNKTDLPQK 341 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 I E+ S K ++ S + G EL I +F Sbjct: 342 IEMERVTELAS--EKRVITTSLIEEKGVDELEKAIADLF 378 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 36/129 (27%), Positives = 72/129 (55%), Gaps = 5/129 (3%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + + A++GRPNVGKS+L+N L+ + + +G TRD + N + P+ + D Sbjct: 215 KILREGIATAIIGRPNVGKSSLLNSLVQEKKAIVTDIAGTTRDVIEEYVNVRGVPLRLID 274 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ I +EQ V++S + + + +++++ + P +D + +V G Sbjct: 275 TAGIRETEDI---VEQIGVERSKEMMSQADLVLIVVNYSEPLTNEDEELFRAV--QGKDF 329 Query: 318 VLALNKWDM 326 ++ +NK D+ Sbjct: 330 IVIVNKTDL 338 >gi|319775065|ref|YP_004137553.1| tRNA modification GTPase mnmE [Haemophilus influenzae F3047] gi|317449656|emb|CBY85862.1| tRNA modification GTPase mnmE [Haemophilus influenzae F3047] Length = 452 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 77/150 (51%), Gaps = 10/150 (6%) Query: 167 YPNHPLEM-----IENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLIN 221 +P+ ++ IE N R + E++ SE K + + +++ + GRPN GKS+L+N Sbjct: 174 FPDEEIDFLADGKIEANLRGIINQLEDVRSEAKQG-SILREGMKVVIAGRPNAGKSSLLN 232 Query: 222 RLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQ 281 L G+ + +G TRD + + P+ I DTAG+R T+ +E+ + ++ Sbjct: 233 ALAGHEAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRNA---TDEVERIGISRAWT 289 Query: 282 SVRTCETTIVLLDATIPFEKQDLRIVDSVF 311 + + I++LD++ P E DL V S F Sbjct: 290 EIEQADRIILMLDSSDP-ESADLSKVRSEF 318 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 63/121 (52%), Gaps = 4/121 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + I G PN GKS+L N L + A+V + G TRD L I+G+ +I+DTAG+ + Sbjct: 217 VVIAGRPNAGKSSLLNALAGHEAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRNAT 276 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITS-FLRK--KNIPIIIVSNKM 121 + + + + I +A I+ ++DS + + S FL K +P+ IV NK+ Sbjct: 277 D-EVERIGISRAWTEIEQADRIILMLDSSDPESADLSKVRSEFLAKLPSTLPVTIVRNKI 335 Query: 122 D 122 D Sbjct: 336 D 336 >gi|298490731|ref|YP_003720908.1| GTP-binding protein Era ['Nostoc azollae' 0708] gi|298232649|gb|ADI63785.1| GTP-binding protein Era ['Nostoc azollae' 0708] Length = 318 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 47/162 (29%), Positives = 79/162 (48%), Gaps = 6/162 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 I I+G PNVGKSTL N+LV +K+A+ TR+RL G + VDT GI Sbjct: 29 IGIIGRPNVGKSTLMNQLVGQKIAITSPIAQTTRNRLRGILTTDKAQLIFVDTPGIHQ-P 87 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + + + ++AI ++LF++D A D IT L + +I+ NK+D + Sbjct: 88 HHQLGEVLVKNAKIAIESVDVVLFVVDGTAACGGGDRFITELLSRSQTAVILGINKIDEQ 147 Query: 125 IAQR-----NFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 A ++ ++ E ++ SA+ LG E ++ + Sbjct: 148 PADAEKLDDSYIQLAKEHQWETIKFSAKTALGLVEAQELLIE 189 Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 3/120 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 I ++GRPNVGKSTL+N+L+G +T + TR+ + + DT G+ +P Sbjct: 29 IGIIGRPNVGKSTLMNQLVGQKIAITSPIAQTTRNRLRGILTTDKAQLIFVDTPGIHQPH 88 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + VK + ++ + + + ++D T D I + + + AV+L +NK D Sbjct: 89 H---QLGEVLVKNAKIAIESVDVVLFVVDGTAACGGGDRFITELLSRSQTAVILGINKID 145 >gi|254780809|ref|YP_003065222.1| tRNA modification GTPase TrmE [Candidatus Liberibacter asiaticus str. psy62] gi|254040486|gb|ACT57282.1| tRNA modification GTPase TrmE [Candidatus Liberibacter asiaticus str. psy62] Length = 440 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 63/181 (34%), Positives = 88/181 (48%), Gaps = 23/181 (12%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 Y I I+G N GKS+LFN L KK +A+V + PG TRD L + G + I DTAGI + Sbjct: 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFL--IDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + + K+ +T L + A LIL L I+SK I SF KNI I + K Sbjct: 280 TDDI-VEKEGIKRTFLEVENADLILLLKEINSKKEI--------SF--PKNIDFIFIGTK 328 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 D Y Y+ ++ + IS+ G EL + I I K+ P I ++KR Sbjct: 329 SD-------LYSTYTEEYDHL--ISSFTGEGLEELINKIKSILSNKFKKLPFS-IPSHKR 378 Query: 181 N 181 + Sbjct: 379 H 379 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 25/88 (28%), Positives = 49/88 (55%), Gaps = 3/88 (3%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP 264 +I ++G N GKS+L N L + + G TRD ++I + + + ++I DTAG+R+ Sbjct: 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVL 292 I +E++ +K++ V + ++L Sbjct: 281 DDI---VEKEGIKRTFLEVENADLILLL 305 >gi|254374550|ref|ZP_04990031.1| hypothetical protein FTDG_00722 [Francisella novicida GA99-3548] gi|151572269|gb|EDN37923.1| hypothetical protein FTDG_00722 [Francisella novicida GA99-3548] Length = 297 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 81/163 (49%), Gaps = 5/163 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 I+I+G PNVGKSTL N ++K K+++ P TR ++ G + F VDT GI + Sbjct: 7 ISIIGRPNVGKSTLLNNILKYKVSITSRKPQTTRHQITGIKTLGDTQFIYVDTPGIHIKE 66 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I K MN + +ILF+++ T + I L+ I I +V NK+D + Sbjct: 67 PKAINKFMNKAATTMFKDVDVILFVVEM-GKWTELEDNIVEKLKHSEIRIFLVVNKVDKK 125 Query: 125 IAQRNFYEIYS----LDFKEIVEISAEHDLGTSELHSVIFKIF 163 + I S L F +++ +SA+ +EL S I K+ Sbjct: 126 KSLEAAMFIESIKEKLSFYDVIYVSAKQGHNINELESRIEKLL 168 Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust. Identities = 17/38 (44%), Positives = 26/38 (68%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 I+++GRPNVGKSTL+N +L Y +T + TR ++ Sbjct: 7 ISIIGRPNVGKSTLLNNILKYKVSITSRKPQTTRHQIT 44 >gi|311070643|ref|YP_003975566.1| tRNA modification GTPase TrmE [Bacillus atrophaeus 1942] gi|310871160|gb|ADP34635.1| tRNA modification GTPase TrmE [Bacillus atrophaeus 1942] Length = 459 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 38/129 (29%), Positives = 74/129 (57%), Gaps = 5/129 (3%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L ++GRPNVGKS+L+N L+ + + G TRD + N + P+ + D Sbjct: 216 KILREGLSTVIIGRPNVGKSSLLNSLVHETKAIVTDIPGTTRDVIEEYVNVRGVPLRLVD 275 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ I E + V++S Q ++ + +++L+ + ++D+++ ++V G V Sbjct: 276 TAGIRETEDIVEKI---GVERSRQVLKEADLILLVLNYSEELSEEDVKLFEAV--KGMDV 330 Query: 318 VLALNKWDM 326 ++ LNK D+ Sbjct: 331 IVILNKTDL 339 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 40/116 (34%), Positives = 66/116 (56%), Gaps = 3/116 (2%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 I+G PNVGKS+L N LV + A+V + PG TRD + + GV +VDTAGI + ++ Sbjct: 226 IIGRPNVGKSSLLNSLVHETKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDI 285 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + K +++ + EA LIL +++ ++ D + F K + +I++ NK D Sbjct: 286 -VEKIGVERSRQVLKEADLILLVLNYSEELSEED--VKLFEAVKGMDVIVILNKTD 338 >gi|148988412|ref|ZP_01819859.1| GTP-binding protein Era [Streptococcus pneumoniae SP6-BS73] gi|147926093|gb|EDK77167.1| GTP-binding protein Era [Streptococcus pneumoniae SP6-BS73] Length = 245 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 48/178 (26%), Positives = 86/178 (48%), Gaps = 5/178 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKST N ++ +K+A++ + TR+++ G + +DT GI K Sbjct: 8 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 ++ M + + E +LF++ + D I L+ +P+I+V NK+D Sbjct: 68 -TALGDFMVESAYSTLREVDTVLFMVPADEARGKGDDMIIERLKAAKVPVILVVNKIDKV 126 Query: 125 IAQRNFYEIYS----LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 + +I +DFKEIV ISA S L ++ + + + P + I ++ Sbjct: 127 HPDQLLSQIDDFRNQMDFKEIVPISALQGNNVSRLVDILSENLDEGFQYFPSDQITDH 184 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKST +N ++G + ++ TR+ + + I DT G+ KP Sbjct: 8 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +L V+ + ++R +T + ++ A K D I++ + V+L +NK D Sbjct: 68 ---TALGDFMVESAYSTLREVDTVLFMVPADEARGKGDDMIIERLKAAKVPVILVVNKID 124 Query: 326 MV 327 V Sbjct: 125 KV 126 >gi|296115042|ref|ZP_06833684.1| GTP-binding protein Era [Gluconacetobacter hansenii ATCC 23769] gi|295978379|gb|EFG85115.1| GTP-binding protein Era [Gluconacetobacter hansenii ATCC 23769] Length = 302 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 42/118 (35%), Positives = 63/118 (53%), Gaps = 1/118 (0%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVGAPN GKSTL NR+ K+++V TR R+ G + N +VDT GI + Sbjct: 14 VAIVGAPNAGKSTLLNRMAGTKLSIVSPKAQTTRFRVLGILMRNHAQMLLVDTPGIFRPR 73 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + + M +A + L +ID++AG+T I S L ++N + +V NK D Sbjct: 74 RM-LDRAMVAAAWTGAEDADITLLIIDARAGLTEAVREIVSQLAQRNRRVWLVLNKTD 130 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 51/165 (30%), Positives = 83/165 (50%), Gaps = 12/165 (7%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHP-IEIFDTAGMRKP 264 +A+VG PN GKSTL+NR+ G + ++ TR V + +NH + + DT G+ +P Sbjct: 14 VAIVGAPNAGKSTLLNRMAGTKLSIVSPKAQTTRFRV-LGILMRNHAQMLLVDTPGIFRP 72 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 R+ L++ V + + T++++DA + IV + V L LNK Sbjct: 73 RRM---LDRAMVAAAWTGAEDADITLLIIDARAGLTEAVREIVSQLAQRNRRVWLVLNKT 129 Query: 325 D-MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLM 368 D M D L L T + L + +++ IS R+G+G+DDLM Sbjct: 130 DLMRRDALLPL----TAELSGLLTVEHVFM--ISARSGQGVDDLM 168 >gi|145634177|ref|ZP_01789888.1| tRNA modification GTPase [Haemophilus influenzae PittAA] gi|145268621|gb|EDK08614.1| tRNA modification GTPase [Haemophilus influenzae PittAA] Length = 452 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 44/150 (29%), Positives = 76/150 (50%), Gaps = 10/150 (6%) Query: 167 YPNHPLEM-----IENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLIN 221 +P+ ++ IE N R + EN+ SE K + + +++ + GRPN GKS+L+N Sbjct: 174 FPDEEIDFLADGKIEANLRGIINQLENVRSEAKQG-SILREGMKVVIAGRPNAGKSSLLN 232 Query: 222 RLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQ 281 L G + +G TRD + + P+ I DTAG+R T+ +E+ + ++ Sbjct: 233 ALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDA---TDEVERIGISRAWT 289 Query: 282 SVRTCETTIVLLDATIPFEKQDLRIVDSVF 311 + + I++LD++ P E DL V S F Sbjct: 290 EIEQADRIILMLDSSDP-ESADLSKVRSEF 318 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/140 (31%), Positives = 72/140 (51%), Gaps = 9/140 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + I G PN GKS+L N L ++ A+V + G TRD L I+G+ +I+DTAG+ D Sbjct: 217 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAT 276 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITS-FLRK--KNIPIIIVSNKM 121 + + + + I +A I+ ++DS + + S FL K +P+ IV NK+ Sbjct: 277 D-EVERIGISRAWTEIEQADRIILMLDSSDPESADLSKVRSEFLAKLPSTLPVTIVRNKI 335 Query: 122 D-----TRIAQRNFYEIYSL 136 D +++ Y+I SL Sbjct: 336 DLNGEQASESEQGGYQIISL 355 >gi|33861837|ref|NP_893398.1| GTP-binding protein Era [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33640205|emb|CAE19740.1| GTP-binding protein ERA homolog [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 303 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 86/172 (50%), Gaps = 17/172 (9%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 + ++GRPNVGKSTLIN+L+G +T + TR+ + K I DT G+ KP Sbjct: 9 VTLLGRPNVGKSTLINKLIGEKITITSPVAQTTRNKLKGILTTKFGQIIFVDTPGVHKPH 68 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + L + VK + ++ + +++LD+++ + D I D + ++ALNKWD Sbjct: 69 HL---LGEILVKNAKSAINGVDMVVLVLDSSVEPGRGDEYIKDFLVANKTEFIVALNKWD 125 Query: 326 MVSDKLNLLQDLRTKAIKNLPQIGDIYINT-----ISGRTGEGLDDLMVSVL 372 +V+ + L+ L Q ++ N+ +S G+G +L+ +L Sbjct: 126 LVNKEFKSLR---------LDQYRKVFGNSKNFQIVSASEGDGCSELIDIIL 168 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 43/165 (26%), Positives = 75/165 (45%), Gaps = 14/165 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYG--QAIINGVIFNIVDTAGIAD 62 + ++G PNVGKSTL N+L+ +K+ + TR++L G +IF VDT G+ Sbjct: 9 VTLLGRPNVGKSTLINKLIGEKITITSPVAQTTRNKLKGILTTKFGQIIF--VDTPGVHK 66 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + + + + + AIN +++ ++DS D I FL I+ NK D Sbjct: 67 PHHL-LGEILVKNAKSAINGVDMVVLVLDSSVEPGRGDEYIKDFLVANKTEFIVALNKWD 125 Query: 123 TRIAQRNFYEIYSLDFKEIVE-------ISAEHDLGTSELHSVIF 160 + + F + ++++ +SA G SEL +I Sbjct: 126 --LVNKEFKSLRLDQYRKVFGNSKNFQIVSASEGDGCSELIDIIL 168 >gi|325955496|ref|YP_004239156.1| tRNA modification GTPase mnmE [Weeksella virosa DSM 16922] gi|323438114|gb|ADX68578.1| tRNA modification GTPase mnmE [Weeksella virosa DSM 16922] Length = 463 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 59/183 (32%), Positives = 96/183 (52%), Gaps = 13/183 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVGAPN GKSTL N L+ ++ A+V + G TRD + ING+ F +DTAGI + Sbjct: 225 VAIVGAPNAGKSTLLNALLNEERAIVSDVEGTTRDTIEEVLYINGIGFRFIDTAGIREAG 284 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLR---KKNIPIIIVSNKM 121 + I + ++T I++A ++L+L DS D+ I + L K + ++NK+ Sbjct: 285 D-KIEQIGIEKTFEKIDKASIVLYLYDSN---IMADNQIANQLEALISKGKIVFNIANKI 340 Query: 122 DTRIAQRNFYEIYSLDFKEIV--EISAEHDLGTSELHSVIFKIFKQ-KYPNHPLEMIENN 178 D + + +FKE++ EISA+ L K+F Q + N+ + I +N Sbjct: 341 DIESDRDVIPQAIKDEFKEVIHLEISAKEKYNIETLKE---KLFDQVQLLNNTDDTIVSN 397 Query: 179 KRN 181 R+ Sbjct: 398 SRH 400 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 41/139 (29%), Positives = 69/139 (49%), Gaps = 8/139 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VG PN GKSTL+N LL R + G TRD++ DTAG+R+ Sbjct: 225 VAIVGAPNAGKSTLLNALLNEERAIVSDVEGTTRDTIEEVLYINGIGFRFIDTAGIREAG 284 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + +EQ ++K+ + + + L D+ I + Q ++++ + G V NK D Sbjct: 285 ---DKIEQIGIEKTFEKIDKASIVLYLYDSNIMADNQIANQLEALISKGKIVFNIANKID 341 Query: 326 MVSDKLNLLQDLRTKAIKN 344 + SD+ D+ +AIK+ Sbjct: 342 IESDR-----DVIPQAIKD 355 >gi|319774961|ref|YP_004137449.1| GTP-binding protein Era-like protein [Haemophilus influenzae F3047] gi|329123137|ref|ZP_08251707.1| GTP-binding protein Era [Haemophilus aegyptius ATCC 11116] gi|317449552|emb|CBY85757.1| GTP-binding protein era homolog [Haemophilus influenzae F3047] gi|327471692|gb|EGF17134.1| GTP-binding protein Era [Haemophilus aegyptius ATCC 11116] Length = 302 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 48/176 (27%), Positives = 84/176 (47%), Gaps = 6/176 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N+++ +K+++ TR R+ G VDT G+ + Sbjct: 13 IAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIKTEGAYQEIYVDTPGLHIEE 72 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN AI + LI+F++D D + + LR P+++ NK+D Sbjct: 73 KRAINRLMNRAASSAIGDVDLIIFVVDG-THWNADDEMVLNKLRNAKAPVVLAINKVDNI 131 Query: 125 IAQRNFYEIYS-----LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 + + + +F IV ISA+ EL +++ + ++ + P + + Sbjct: 132 KNKDDLLPFITDLSSKFNFAHIVPISAQRGNNVHELETIVRQSLREGVHHFPEDYV 187 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 42/131 (32%), Positives = 70/131 (53%), Gaps = 7/131 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIF-DTAGMR-K 263 IA+VGRPNVGKSTL+N++LG +T ++ TR + + + EI+ DT G+ + Sbjct: 13 IAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRI-VGIKTEGAYQEIYVDTPGLHIE 71 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 R L + ++ V + I ++D T + D +++ + N VVLA+NK Sbjct: 72 EKRAINRLMNRAASSAIGDV---DLIIFVVDGT-HWNADDEMVLNKLRNAKAPVVLAINK 127 Query: 324 WDMVSDKLNLL 334 D + +K +LL Sbjct: 128 VDNIKNKDDLL 138 >gi|289167974|ref|YP_003446243.1| tRNA modification GTPase TrmE [Streptococcus mitis B6] gi|288907541|emb|CBJ22378.1| tRNA modification GTPase TrmE [Streptococcus mitis B6] Length = 457 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 72/120 (60%), Gaps = 5/120 (4%) Query: 207 AVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSR 266 A++GRPNVGKS+L+N LL ++ + +G TRD + N P+++ DTAG+R+ Sbjct: 227 AIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDD 286 Query: 267 ITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 I +EQ V++S ++++ + +++L+A+ QD ++++ T ++ LNK D+ Sbjct: 287 I---VEQIGVERSKKALKEADLVLLVLNASESLTVQDRQLLEISQETNR--IILLNKTDL 341 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 42/118 (35%), Positives = 71/118 (60%), Gaps = 5/118 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+++ A+V + G TRD + INGV ++DTAGI + + Sbjct: 227 AIIGRPNVGKSSLLNNLLREDKAIVTDIAGTTRDVIEEYVNINGVPLKLIDTAGIRETDD 286 Query: 66 CSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 I +Q+ ++++ A+ EA L+L ++++ +T D + ++ N II+ NK D Sbjct: 287 --IVEQIGVERSKKALKEADLVLLVLNASESLTVQDRQLLEISQETN--RIILLNKTD 340 >gi|282848771|ref|ZP_06258166.1| tRNA modification GTPase TrmE [Veillonella parvula ATCC 17745] gi|282581557|gb|EFB86945.1| tRNA modification GTPase TrmE [Veillonella parvula ATCC 17745] Length = 461 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 55/203 (27%), Positives = 96/203 (47%), Gaps = 22/203 (10%) Query: 167 YPNHPLEMIENNKRNEE-----SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLIN 221 YP +E + + + E+ E++ S + + I + +VGRPN GKS+L+N Sbjct: 183 YPEEDIEDVTSQEVREQLEPILKAMEDLLSTANTG-RLIRDGITTVIVGRPNAGKSSLMN 241 Query: 222 RLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQ 281 LL NR + G TRDS+ K + + DTAG+R E+L V+++ Sbjct: 242 ALLRENRAIVTDIPGTTRDSIEEYMTVKGISLRLIDTAGIRDTQDTVEAL---GVERARD 298 Query: 282 SVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKA 341 + + + ++D + P +++ I+ SV +G ++ LNK SD ++ D Sbjct: 299 YINKADIVLCVIDGSTPLNPEEIEILTSV--SGLNTIVLLNK----SDVAQVVTD----- 347 Query: 342 IKNLPQIGDI-YINTISGRTGEG 363 +N+ + G I IS + GEG Sbjct: 348 -ENIKEHGTFTAIERISAKEGEG 369 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 45/152 (29%), Positives = 79/152 (51%), Gaps = 3/152 (1%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T IVG PN GKS+L N L+++ A+V + PG TRD + + G+ ++DTAGI D Sbjct: 225 TTVIVGRPNAGKSSLMNALLRENRAIVTDIPGTTRDSIEEYMTVKGISLRLIDTAGIRDT 284 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 ++ A + ++ IN+A ++L +ID + P + I + + N +++ + + Sbjct: 285 QDTVEALGV-ERARDYINKADIVLCVIDGSTPLNPEEIEILTSVSGLNTIVLLNKSDVAQ 343 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 + N E + F I ISA+ G++ L Sbjct: 344 VVTDENIKEHGT--FTAIERISAKEGEGSAVL 373 >gi|332652574|ref|ZP_08418319.1| GTP-binding protein Era [Ruminococcaceae bacterium D16] gi|332517720|gb|EGJ47323.1| GTP-binding protein Era [Ruminococcaceae bacterium D16] Length = 298 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 53/174 (30%), Positives = 85/174 (48%), Gaps = 14/174 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIIN--GVIFNIVDTAGIAD 62 I + G PNVGKSTL N LV +K+A+V N P TR+R+ AI+N F VDT G+ Sbjct: 9 ITLCGRPNVGKSTLTNALVGEKVAIVTNKPQTTRNRI--TAILNRGESQFVFVDTPGLHK 66 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + + M + + ++ + I+ L++ I + + ++ P ++V NK+D Sbjct: 67 ART-RLGDYMVNVVKESVADVDGIMLLVEPIPNIGAPEQQLIDRIKTLGCPSVLVINKVD 125 Query: 123 TRIAQRNFYEIYSL-----DFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHP 171 T + E+ + DF +V ISA+ G EL +V+ PN P Sbjct: 126 TLEQKEKLLEVIQVYTQAHDFTAVVPISAKTGEGVDELLNVLEGFL----PNGP 175 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 56/176 (31%), Positives = 83/176 (47%), Gaps = 12/176 (6%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 I K I + GRPNVGKSTL N L+G + ++ TR+ ++ N DT Sbjct: 3 IKKSGIITLCGRPNVGKSTLTNALVGEKVAIVTNKPQTTRNRITAILNRGESQFVFVDTP 62 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP-FEKQDLRIVDSVFNTGHAVV 318 G+ K VK+S+ V I+LL IP + +++D + G V Sbjct: 63 GLHKARTRLGDYMVNVVKESVADV----DGIMLLVEPIPNIGAPEQQLIDRIKTLGCPSV 118 Query: 319 LALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDI-YINTISGRTGEGLDDLMVSVLE 373 L +NK D + K LL+ I+ Q D + IS +TGEG+D+L+ +VLE Sbjct: 119 LVINKVDTLEQKEKLLE-----VIQVYTQAHDFTAVVPISAKTGEGVDELL-NVLE 168 >gi|170694075|ref|ZP_02885231.1| tRNA modification GTPase TrmE [Burkholderia graminis C4D1M] gi|170141147|gb|EDT09319.1| tRNA modification GTPase TrmE [Burkholderia graminis C4D1M] Length = 464 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 66/119 (55%), Gaps = 2/119 (1%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 ++ + G PNVGKS+L N L ++A+V G TRD++ I G+ +++DTAG+ D Sbjct: 228 SVVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQIEGIPLHVIDTAGLRDT 287 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 ++ + K +T I A ++L L+D++ G+T D I +P++ V NK D Sbjct: 288 ED-EVEKIGIARTWSEIERADVVLHLLDARTGMTAEDETIAKRF-PSGVPVVRVLNKTD 344 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 64/282 (22%), Positives = 122/282 (43%), Gaps = 35/282 (12%) Query: 114 IIIVSNKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLE 173 +I S + R A R+ +S D +VE + ++ + + P E Sbjct: 142 LIEASTEAAARSAGRSLDGAFSRDIHALVE------------EVITLRMLVEATLDFPEE 189 Query: 174 MIENNKRNEESPK--------ENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLG 225 I+ + + K ++ +E + + + L + + G+PNVGKS+L+N L G Sbjct: 190 EIDFLEAADARGKLARIRERLASVLAEARQGAL-LREGLSVVLAGQPNVGKSSLLNALAG 248 Query: 226 YNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRT 285 + +G TRD V+ + + P+ + DTAG+R + +E+ + ++ + Sbjct: 249 AELAIVTPIAGTTRDKVAQTIQIEGIPLHVIDTAGLRD---TEDEVEKIGIARTWSEIER 305 Query: 286 CETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNL 345 + + LLDA +D I F +G VV LNK D+V + T+A+ Sbjct: 306 ADVVLHLLDARTGMTAEDETIAKR-FPSGVPVVRVLNKTDLVGLPPH------TRALDAD 358 Query: 346 PQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYL 387 ++ ++ +S + G+G+ L +L I W+ + YL Sbjct: 359 LELSEVR---LSAKQGDGVSLLRDELLRIAG-WQAGAESVYL 396 >gi|294782449|ref|ZP_06747775.1| GTP-binding protein Era [Fusobacterium sp. 1_1_41FAA] gi|294481090|gb|EFG28865.1| GTP-binding protein Era [Fusobacterium sp. 1_1_41FAA] Length = 297 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 70/125 (56%), Gaps = 4/125 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA+VGRPNVGKSTLIN+++ + ++G TRD++ N K++ DT G+ KP Sbjct: 6 IAIVGRPNVGKSTLINKMVAEKVAIVSDKAGTTRDNIKGILNVKDNQYIFIDTPGIHKPQ 65 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSV-FNTGHAVVLALNKW 324 + L + ++ ++ + + L+DA+ D+ ++D + N+ +L +NK Sbjct: 66 HL---LGEYMTNIAVNILKDVDIILFLIDASKTIGTGDMFVMDRINENSNKPKILLVNKV 122 Query: 325 DMVSD 329 D++SD Sbjct: 123 DLISD 127 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 45/122 (36%), Positives = 70/122 (57%), Gaps = 8/122 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N++V +K+A+V + G TRD + G + + +DT GI + Sbjct: 6 IAIVGRPNVGKSTLINKMVAEKVAIVSDKAGTTRDNIKGILNVKDNQYIFIDTPGIHKPQ 65 Query: 65 NCSIAKQMNDQTELAIN---EAHLILFLIDSKAGITPYDHAITSFLRK-KNIPIIIVSNK 120 + + + M T +A+N + +ILFLID+ I D + + + N P I++ NK Sbjct: 66 HL-LGEYM---TNIAVNILKDVDIILFLIDASKTIGTGDMFVMDRINENSNKPKILLVNK 121 Query: 121 MD 122 +D Sbjct: 122 VD 123 >gi|148826352|ref|YP_001291105.1| tRNA modification GTPase TrmE [Haemophilus influenzae PittEE] gi|166200480|sp|A5UD71|MNME_HAEIE RecName: Full=tRNA modification GTPase mnmE gi|148716512|gb|ABQ98722.1| tRNA modification GTPase TrmE [Haemophilus influenzae PittEE] Length = 452 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 44/150 (29%), Positives = 76/150 (50%), Gaps = 10/150 (6%) Query: 167 YPNHPLEM-----IENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLIN 221 +P+ ++ IE N R + EN+ SE K + + +++ + GRPN GKS+L+N Sbjct: 174 FPDEEIDFLADGKIEANLRGIINQLENVRSEAKQG-SILREGMKVVIAGRPNAGKSSLLN 232 Query: 222 RLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQ 281 L G + +G TRD + + P+ I DTAG+R T+ +E+ + ++ Sbjct: 233 ALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDA---TDEVERIGISRAWT 289 Query: 282 SVRTCETTIVLLDATIPFEKQDLRIVDSVF 311 + + I++LD++ P E DL V S F Sbjct: 290 EIEQADRIILMLDSSDP-ESADLSKVRSEF 318 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/140 (31%), Positives = 71/140 (50%), Gaps = 9/140 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + I G PN GKS+L N L ++ A+V + G TRD L I+G+ +I+DTAG+ D Sbjct: 217 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAT 276 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITS-FLRK--KNIPIIIVSNKM 121 + + + + I +A I+ ++DS + + S FL K +P+ IV NK+ Sbjct: 277 D-EVERIGISRAWTEIEQADRIILMLDSSDPESADLSKVRSEFLAKLPSTLPVTIVRNKI 335 Query: 122 D-----TRIAQRNFYEIYSL 136 D ++ Y+I SL Sbjct: 336 DLNGEQASESEEGGYQIISL 355 >gi|310764814|gb|ADP09764.1| GTP-binding protein Era [Erwinia sp. Ejp617] Length = 301 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 48/177 (27%), Positives = 88/177 (49%), Gaps = 8/177 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N+L+ +K+++ P TR R+ G VDT G+ + Sbjct: 11 IAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGIHTEGQYQAIYVDTPGLHMEE 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN +I + +++F+++ T D + + L+ +P+++ NK+D Sbjct: 71 KRAINRLMNRAASSSIGDVEMVIFVVEGTR-WTADDEMVLNKLKDGKVPVLLAINKVDN- 128 Query: 125 IAQRNF------YEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 I ++ + ++F ++V ISAE + S++ K + + P + I Sbjct: 129 ITDKSILLPHLQFLGQQMNFMDVVPISAEKGSNVDTIASIVRKRLPEAEHHFPEDYI 185 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 39/133 (29%), Positives = 68/133 (51%), Gaps = 3/133 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA+VGRPNVGKSTL+N+LLG +T + TR + + DT G+ Sbjct: 11 IAIVGRPNVGKSTLLNQLLGQKVSITSRKPQTTRHRIMGIHTEGQYQAIYVDTPGLHMEE 70 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + ++ + + + S+ E I +++ T + D +++ + + V+LA+NK D Sbjct: 71 K--RAINRLMNRAASSSIGDVEMVIFVVEGT-RWTADDEMVLNKLKDGKVPVLLAINKVD 127 Query: 326 MVSDKLNLLQDLR 338 ++DK LL L+ Sbjct: 128 NITDKSILLPHLQ 140 >gi|254785338|ref|YP_003072767.1| GTP-binding protein Era [Teredinibacter turnerae T7901] gi|237686443|gb|ACR13707.1| GTP-binding protein Era [Teredinibacter turnerae T7901] Length = 296 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 44/118 (37%), Positives = 65/118 (55%), Gaps = 1/118 (0%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N L+++K+A+ P TR+ + G + V VDT GI G Sbjct: 9 IAIVGRPNVGKSTLLNHLIEQKLAITSRKPQTTRNNMLGIKTVGDVQMIFVDTPGIHKGH 68 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 +I + MN AI + +++F++ K T D + L++ PII+ NK+D Sbjct: 69 GKAINRYMNKSASSAIKDVDVVVFVV-DKNIWTDEDEWVLEQLQRCESPIIVAVNKVD 125 Score = 43.5 bits (101), Expect = 0.081, Method: Compositional matrix adjust. Identities = 42/167 (25%), Positives = 85/167 (50%), Gaps = 4/167 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA+VGRPNVGKSTL+N L+ +T + TR+++ + + DT G+ K Sbjct: 9 IAIVGRPNVGKSTLLNHLIEQKLAITSRKPQTTRNNMLGIKTVGDVQMIFVDTPGIHKGH 68 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +++ + K + +++ + + ++D I + +D +++ + +++A+NK D Sbjct: 69 --GKAINRYMNKSASSAIKDVDVVVFVVDKNI-WTDEDEWVLEQLQRCESPIIVAVNKVD 125 Query: 326 MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVL 372 + DK LL L+ LP+ + ++ + + E L+ L+ S L Sbjct: 126 QLDDKSVLLPHLKQLETA-LPKAELVPVSALRHQNLERLEQLVASFL 171 >gi|226940390|ref|YP_002795464.1| GTP-binding protein Era [Laribacter hongkongensis HLHK9] gi|226715317|gb|ACO74455.1| GTP-binding protein [Laribacter hongkongensis HLHK9] Length = 298 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 51/194 (26%), Positives = 89/194 (45%), Gaps = 11/194 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N L+ +K+++ TR R+ G F VDT G Sbjct: 14 VAIVGRPNVGKSTLMNHLIGQKISITSKKAQTTRHRVTGIETREDAQFIFVDTPGFQTRH 73 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 ++ +N + + +L ++++ + P D + + L KN P++ V NK D R Sbjct: 74 RNALNDVLNQSVRQTLADVDCVLMVLEA-GKLGPADQEVLNLL-PKNRPVVAVINKSD-R 130 Query: 125 IAQRNFYEIY------SLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 + + + + F +I+ + A+H EL ++ Q P +P +M+ + Sbjct: 131 LKDKAEMAGFLVKVSEAFAFADIIPVCAKHGQRLDELLKLVQPHLPQSVPLYPEDMVTD- 189 Query: 179 KRNEESPKENITSE 192 +NE+ I E Sbjct: 190 -KNEKFLAAEIVRE 202 Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 78/165 (47%), Gaps = 12/165 (7%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VGRPNVGKSTL+N L+G +T ++ TR V+ ++ DT G + Sbjct: 14 VAIVGRPNVGKSTLMNHLIGQKISITSKKAQTTRHRVTGIETREDAQFIFVDTPGFQTRH 73 Query: 266 R--ITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 R + + L Q +V++++ V C ++ P +++ L ++ VV +NK Sbjct: 74 RNALNDVLNQ-SVRQTLADV-DCVLMVLEAGKLGPADQEVLNLLPK----NRPVVAVINK 127 Query: 324 WDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLM 368 D + DK + L +K I + + G+ LD+L+ Sbjct: 128 SDRLKDKAEMAGFL----VKVSEAFAFADIIPVCAKHGQRLDELL 168 >gi|144899662|emb|CAM76526.1| thiophene and furan oxidation protein ThdF [Magnetospirillum gryphiswaldense MSR-1] Length = 435 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 45/174 (25%), Positives = 85/174 (48%), Gaps = 29/174 (16%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 + + + IA++G PN GKS+L+NR+ G + +++G TRD + + P+ + D Sbjct: 208 ERLRDGIHIAILGAPNAGKSSLMNRIAGREVAIVSAKAGTTRDVIETHLDLHGWPVVLAD 267 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK--QDLRIVDSVFNTGH 315 TAG+R+ + E +E + + +++ + + +++ DA++ E+ Q ++D Sbjct: 268 TAGLREAA---EDIEAEGIARALARAESADLKMLVFDASLLPERDAQTQAMID------E 318 Query: 316 AVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMV 369 A ++ NK DM + P D I +S RTG GLD L+ Sbjct: 319 ASIVVFNKADMAN-----------------PVDSDAGI-MVSARTGLGLDALLA 354 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 39/124 (31%), Positives = 61/124 (49%), Gaps = 32/124 (25%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI---- 60 IAI+GAPN GKS+L NR+ +++A+V G TRD + ++G + DTAG+ Sbjct: 216 IAILGAPNAGKSSLMNRIAGREVAIVSAKAGTTRDVIETHLDLHGWPVVLADTAGLREAA 275 Query: 61 -----------------ADGK----NCSIAKQMNDQTELAINEAHLILF-------LIDS 92 AD K + S+ + + QT+ I+EA +++F +DS Sbjct: 276 EDIEAEGIARALARAESADLKMLVFDASLLPERDAQTQAMIDEASIVVFNKADMANPVDS 335 Query: 93 KAGI 96 AGI Sbjct: 336 DAGI 339 >gi|257462448|ref|ZP_05626861.1| tRNA modification GTPase TrmE [Fusobacterium sp. D12] Length = 404 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 41/129 (31%), Positives = 69/129 (53%), Gaps = 4/129 (3%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K I + ++ ++G+PNVGKS+L+N +L R + +G TRD + N K P+ + D Sbjct: 162 KMIKEGVKTVIIGKPNVGKSSLLNSILREERAIVTQVAGTTRDVIEEVINIKGIPLILVD 221 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R + E++ V KS + ++ + + +LDA+ K+D I S V Sbjct: 222 TAGIRDTTDFVENI---GVMKSKEFLQKADLVLFVLDASQELSKEDREIYIS-LQENQKV 277 Query: 318 VLALNKWDM 326 + LNK D+ Sbjct: 278 IGILNKTDL 286 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 54/182 (29%), Positives = 95/182 (52%), Gaps = 16/182 (8%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG-- 63 I+G PNVGKS+L N +++++ A+V G TRD + I G+ +VDTAGI D Sbjct: 171 VIIGKPNVGKSSLLNSILREERAIVTQVAGTTRDVIEEVINIKGIPLILVDTAGIRDTTD 230 Query: 64 --KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 +N + K ++ + +A L+LF++D+ ++ D I L+ +N +I + NK Sbjct: 231 FVENIGVMK-----SKEFLQKADLVLFVLDASQELSKEDREIYISLQ-ENQKVIGILNKT 284 Query: 122 DTRIAQRNFYEIYSLD-FKEIVEISAEHDLGTSELHSVIFK-IFKQKYPNHPLEMIENNK 179 D ++ SL K +E+SA +G E+ I++ I ++K + ++I N Sbjct: 285 DL----EKKIQVSSLSKIKNWIEVSAMKCIGIEEMEEKIYQYILQEKVEENSQKLILTNI 340 Query: 180 RN 181 R+ Sbjct: 341 RH 342 >gi|203284100|ref|YP_002221840.1| thiophene and furan oxidation protein [Borrelia duttonii Ly] gi|226704780|sp|B5RL05|MNME_BORDL RecName: Full=tRNA modification GTPase mnmE gi|201083543|gb|ACH93134.1| thiophene and furan oxidation protein [Borrelia duttonii Ly] Length = 464 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 69/120 (57%), Gaps = 4/120 (3%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+ + G+ NVGKS+LFN L+K+ A+V ++ G TRD + +G++FN+ DTAG+ + Sbjct: 224 TLVLAGSVNVGKSSLFNLLLKEDRAIVSSYAGTTRDYIQASFEFDGILFNVFDTAGLRET 283 Query: 64 KNCSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + +Q+ ++ I EA LI +++D +T D K++ ++ V NK+D Sbjct: 284 SD--FVEQLGIVRSNSLIKEASLIFYVVDLSGKLTDDDLKFID-AYKEDSRVLFVLNKVD 340 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 36/131 (27%), Positives = 67/131 (51%), Gaps = 4/131 (3%) Query: 196 SVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEI 255 + + + + + + G NVGKS+L N LL +R + S +G TRD + S+ + + Sbjct: 215 TARKLENGVTLVLAGSVNVGKSSLFNLLLKEDRAIVSSYAGTTRDYIQASFEFDGILFNV 274 Query: 256 FDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGH 315 FDTAG+R+ S + +EQ + +S ++ ++D + DL+ +D+ + Sbjct: 275 FDTAGLRETS---DFVEQLGIVRSNSLIKEASLIFYVVDLSGKLTDDDLKFIDA-YKEDS 330 Query: 316 AVVLALNKWDM 326 V+ LNK D+ Sbjct: 331 RVLFVLNKVDL 341 >gi|224825224|ref|ZP_03698330.1| GTP-binding protein Era [Lutiella nitroferrum 2002] gi|224602895|gb|EEG09072.1| GTP-binding protein Era [Lutiella nitroferrum 2002] Length = 296 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 50/179 (27%), Positives = 88/179 (49%), Gaps = 7/179 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N L+ +K+++ TR R+ G + F VDT G Sbjct: 11 VAIVGRPNVGKSTLMNHLIGQKVSITSKKAQTTRHRVNGIHTEDTAQFVFVDTPGFQTFH 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 ++ + +N + +++ +LF+I++ T D + L K+ P+++V NK+D Sbjct: 71 KGALNEVLNRSVKETLSDVDCVLFVIEAMR-WTGADKELLPLL-PKHTPVMLVINKLDKA 128 Query: 124 --RIAQRNFYEIYSLD--FKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 + A F E D F ++ +SA+H +EL + + P +P +M+ + Sbjct: 129 KDKQALMEFIETVKADFAFADVEVVSAKHGQRLAELLDKVRPRLPESMPLYPEDMVTDK 187 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 45/168 (26%), Positives = 81/168 (48%), Gaps = 12/168 (7%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMR--K 263 +A+VGRPNVGKSTL+N L+G +T ++ TR V+ DT G + Sbjct: 11 VAIVGRPNVGKSTLMNHLIGQKVSITSKKAQTTRHRVNGIHTEDTAQFVFVDTPGFQTFH 70 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 + E L ++VK+++ V C ++ + + + D ++ + V+L +NK Sbjct: 71 KGALNEVL-NRSVKETLSDV-DC---VLFVIEAMRWTGADKELL-PLLPKHTPVMLVINK 124 Query: 324 WDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSV 371 D DK L++ + T +K D+ + +S + G+ L +L+ V Sbjct: 125 LDKAKDKQALMEFIET--VKADFAFADVEV--VSAKHGQRLAELLDKV 168 >gi|225854473|ref|YP_002735985.1| GTP-binding protein Era [Streptococcus pneumoniae JJA] gi|254783668|sp|C1CDW4|ERA_STRZJ RecName: Full=GTPase Era gi|225722974|gb|ACO18827.1| GTP-binding protein Era [Streptococcus pneumoniae JJA] Length = 299 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 48/178 (26%), Positives = 86/178 (48%), Gaps = 5/178 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKST N ++ +K+A++ + TR+++ G + +DT GI K Sbjct: 8 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 ++ M + + E +LF++ + D I L+ +P+I+V NK+D Sbjct: 68 -TALGDFMVESAYSTLREVDTVLFMVPADEARGKGDDMIIERLKAAKVPVILVVNKIDKV 126 Query: 125 IAQRNFYEIYS----LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 + +I +DFKEIV ISA S L ++ + + + P + I ++ Sbjct: 127 HPDQLLSQIDDFRNQMDFKEIVPISALQGNNVSRLVDILSENLGEGFQYFPSDQITDH 184 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKST +N ++G + ++ TR+ + + I DT G+ KP Sbjct: 8 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +L V+ + ++R +T + ++ A K D I++ + V+L +NK D Sbjct: 68 ---TALGDFMVESAYSTLREVDTVLFMVPADEARGKGDDMIIERLKAAKVPVILVVNKID 124 Query: 326 MV 327 V Sbjct: 125 KV 126 >gi|294793788|ref|ZP_06758925.1| GTP-binding protein Era [Veillonella sp. 3_1_44] gi|294455358|gb|EFG23730.1| GTP-binding protein Era [Veillonella sp. 3_1_44] Length = 307 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 85/172 (49%), Gaps = 11/172 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTL N L+ K+A+V + TR+R+ +DT G+ K Sbjct: 20 VAVVGRPNVGKSTLINALIGDKIAIVSDKAQTTRNRIICVYTDESKQIVFMDTPGVHKPK 79 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + + M D ++ E +LF++ P D+ I L++ +P+ +V NK+DT Sbjct: 80 H-KLGEFMVDAAIESLKETEAVLFVVAGNEKRGPGDNFIIEQLKRVKVPVFLVVNKIDT- 137 Query: 125 IAQRNFYE--IYSLD---FKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHP 171 + + E ++ D F ++ ISA+ SE I K+ ++ P P Sbjct: 138 LKKEELLEAIVFYQDAYPFAGVIPISAKDKENLSE----ILKVLEETLPEGP 185 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 3/120 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +AVVGRPNVGKSTLIN L+G + ++ TR+ + + ++ I DT G+ KP Sbjct: 20 VAVVGRPNVGKSTLINALIGDKIAIVSDKAQTTRNRIICVYTDESKQIVFMDTPGVHKPK 79 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + V +++S++ E + ++ D I++ + V L +NK D Sbjct: 80 H---KLGEFMVDAAIESLKETEAVLFVVAGNEKRGPGDNFIIEQLKRVKVPVFLVVNKID 136 >gi|203287638|ref|YP_002222653.1| thiophene and furan oxidation protein [Borrelia recurrentis A1] gi|226704781|sp|B5RQZ8|MNME_BORRA RecName: Full=tRNA modification GTPase mnmE gi|201084858|gb|ACH94432.1| thiophene and furan oxidation protein [Borrelia recurrentis A1] Length = 464 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 69/120 (57%), Gaps = 4/120 (3%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+ + G+ NVGKS+LFN L+K+ A+V ++ G TRD + +G++FN+ DTAG+ + Sbjct: 224 TLVLAGSVNVGKSSLFNLLLKEDRAIVSSYAGTTRDYIQASFEFDGILFNVFDTAGLRET 283 Query: 64 KNCSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + +Q+ ++ I EA LI +++D +T D K++ ++ V NK+D Sbjct: 284 SD--FVEQLGIVRSNSLIKEASLIFYVVDLSGKLTDDDLKFID-AYKEDSRVLFVLNKVD 340 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 36/131 (27%), Positives = 67/131 (51%), Gaps = 4/131 (3%) Query: 196 SVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEI 255 + + + + + + G NVGKS+L N LL +R + S +G TRD + S+ + + Sbjct: 215 TARKLENGVTLVLAGSVNVGKSSLFNLLLKEDRAIVSSYAGTTRDYIQASFEFDGILFNV 274 Query: 256 FDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGH 315 FDTAG+R+ S + +EQ + +S ++ ++D + DL+ +D+ + Sbjct: 275 FDTAGLRETS---DFVEQLGIVRSNSLIKEASLIFYVVDLSGKLTDDDLKFIDA-YKEDS 330 Query: 316 AVVLALNKWDM 326 V+ LNK D+ Sbjct: 331 RVLFVLNKVDL 341 >gi|205371919|ref|ZP_03224739.1| tRNA modification GTPase TrmE [Bacillus coahuilensis m4-4] Length = 461 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 40/129 (31%), Positives = 72/129 (55%), Gaps = 5/129 (3%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L ++GRPNVGKS+L+N L+ N+ + G TRD + N + P+ + D Sbjct: 218 KILREGLSTVIIGRPNVGKSSLLNSLVHENKAIVTDIPGTTRDVIEEYVNVRGVPLRLVD 277 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ I E + V+KS Q ++ + +++L+ F ++D + +V G V Sbjct: 278 TAGIRETEDIVERI---GVEKSRQVLKEADLLLLVLNHGDEFTEEDENLFKAV--EGMDV 332 Query: 318 VLALNKWDM 326 ++ +NK D+ Sbjct: 333 IVIVNKTDL 341 Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 38/116 (32%), Positives = 65/116 (56%), Gaps = 3/116 (2%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 I+G PNVGKS+L N LV + A+V + PG TRD + + GV +VDTAGI + ++ Sbjct: 228 IIGRPNVGKSSLLNSLVHENKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDI 287 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + + +++ + EA L+L +++ T D + F + + +I++ NK D Sbjct: 288 -VERIGVEKSRQVLKEADLLLLVLNHGDEFTEEDENL--FKAVEGMDVIVIVNKTD 340 >gi|222523307|ref|YP_002567777.1| GTP-binding protein Era [Chloroflexus sp. Y-400-fl] gi|222447186|gb|ACM51452.1| GTP-binding protein Era [Chloroflexus sp. Y-400-fl] Length = 469 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 53/184 (28%), Positives = 88/184 (47%), Gaps = 9/184 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTL N L+ +K+A+V P TR + G G +DT GI + Sbjct: 179 VALVGKPNVGKSTLLNALLGEKVAIVSPRPQTTRVPVRGILSRPGEQIIFIDTPGIHEPS 238 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + K M + E + A +I F++D T D I +++ ++V NK+D + Sbjct: 239 H-RLGKLMVELAERTLPNADVICFMVDISQPPTRLDRMIAQQVQRARGHKLLVLNKVDQK 297 Query: 125 IAQRNFYEIYSLDFKEI------VEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 + E Y ++E+ + ISA LG + L S I + P +PL+ + + Sbjct: 298 PKRPG--ENYLPAYRELGQWEMEIAISARRRLGLTALLSEISARLPEGPPLYPLDQMTDQ 355 Query: 179 KRNE 182 + Sbjct: 356 TEQQ 359 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 57/120 (47%), Gaps = 3/120 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VG+PNVGKSTL+N LLG + + TR V + I DT G+ +PS Sbjct: 179 VALVGKPNVGKSTLLNALLGEKVAIVSPRPQTTRVPVRGILSRPGEQIIFIDTPGIHEPS 238 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + V+ + +++ + ++D + P + D I V +L LNK D Sbjct: 239 H---RLGKLMVELAERTLPNADVICFMVDISQPPTRLDRMIAQQVQRARGHKLLVLNKVD 295 >gi|110638429|ref|YP_678638.1| tRNA modification GTPase TrmE [Cytophaga hutchinsonii ATCC 33406] gi|123354534|sp|Q11TG8|MNME_CYTH3 RecName: Full=tRNA modification GTPase mnmE gi|110281110|gb|ABG59296.1| tRNA modification GTPase trmE [Cytophaga hutchinsonii ATCC 33406] Length = 460 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 55/188 (29%), Positives = 93/188 (49%), Gaps = 19/188 (10%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 I+G PN GKSTL N L+ ++ A+V G TRD + + + G+ F +DTAG+ + + Sbjct: 229 IIGKPNAGKSTLLNTLLNEEKAIVSEIAGTTRDFIEDELNVEGITFRFIDTAGLREATDA 288 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF--LRKKNIPIIIVSNKMDTR 124 A + +T + +A L+++L D K+ T I L+ P ++V NK+D R Sbjct: 289 IEAMGVK-RTREKMTQASLVIYLFDVKS--TSERELIRDLEELKALKAPFLVVGNKIDKR 345 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKI-----FKQKYPNHPLEMIENNK 179 + + + I+ ISA+ ++G EL + +I FKQ + + N Sbjct: 346 --EDAIITTFR-NIDGIIYISAKQNIGIEELKQNLLEIIQYESFKQN------DTLVTNM 396 Query: 180 RNEESPKE 187 R+ ES +E Sbjct: 397 RHYESLRE 404 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 80/167 (47%), Gaps = 15/167 (8%) Query: 208 VVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRI 267 ++G+PN GKSTL+N LL + + +G TRD + N + DTAG+R+ Sbjct: 229 IIGKPNAGKSTLLNTLLNEEKAIVSEIAGTTRDFIEDELNVEGITFRFIDTAGLREA--- 285 Query: 268 TESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMV 327 T+++E VK++ + + I L D E++ +R ++ + ++ NK D Sbjct: 286 TDAIEAMGVKRTREKMTQASLVIYLFDVKSTSERELIRDLEELKALKAPFLVVGNKIDKR 345 Query: 328 SDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEI 374 D + +N+ G IY IS + G+++L ++LEI Sbjct: 346 EDAI-------ITTFRNID--GIIY---ISAKQNIGIEELKQNLLEI 380 >gi|326319555|ref|YP_004237227.1| tRNA modification GTPase TrmE [Acidovorax avenae subsp. avenae ATCC 19860] gi|323376391|gb|ADX48660.1| tRNA modification GTPase TrmE [Acidovorax avenae subsp. avenae ATCC 19860] Length = 476 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 49/181 (27%), Positives = 88/181 (48%), Gaps = 15/181 (8%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 +++ + G+PN GKS+L+N L G + +G TRD V + + P+ + DTAG+R+ Sbjct: 232 IKVVIAGQPNAGKSSLLNALAGAELAIVTPIAGTTRDKVQQTIQIEGVPLHVIDTAGLRE 291 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP----FEKQDLRIVDSVFNTGHAVVL 319 + +E+ ++++ Q + + + L D T +E D I + A V Sbjct: 292 SD---DEVERIGIERAWQEIAAADAVLFLHDLTRAGQPDYEAADAEIAARLAGMAPAQVP 348 Query: 320 ALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWK 379 ++ W+ SD+ + + A + P G +S RTGEGLD L +L+I W+ Sbjct: 349 VVDVWNK-SDR----AEGSSGAAPDAP--GRAAAVRLSARTGEGLDGLRRVLLDIAG-WQ 400 Query: 380 T 380 + Sbjct: 401 S 401 Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 40/133 (30%), Positives = 63/133 (47%), Gaps = 24/133 (18%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + I G PN GKS+L N L ++A+V G TRD++ I GV +++DTAG+ Sbjct: 234 VVIAGQPNAGKSSLLNALAGAELAIVTPIAGTTRDKVQQTIQIEGVPLHVIDTAGL---- 289 Query: 65 NCSIAKQMNDQTE--------LAINEAHLILFLID-SKAGITPYDHAITSFLRK------ 109 ++ +D+ E I A +LFL D ++AG Y+ A + Sbjct: 290 -----RESDDEVERIGIERAWQEIAAADAVLFLHDLTRAGQPDYEAADAEIAARLAGMAP 344 Query: 110 KNIPIIIVSNKMD 122 +P++ V NK D Sbjct: 345 AQVPVVDVWNKSD 357 >gi|259417693|ref|ZP_05741612.1| tRNA modification GTPase TrmE [Silicibacter sp. TrichCH4B] gi|259346599|gb|EEW58413.1| tRNA modification GTPase TrmE [Silicibacter sp. TrichCH4B] Length = 428 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 48/181 (26%), Positives = 77/181 (42%), Gaps = 43/181 (23%) Query: 192 EGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNH 251 +G S + I + +A+VG PNVGKSTL+N L G N +T +G TRD + + + Sbjct: 202 QGVSIAERIREGFEVAIVGSPNVGKSTLLNALAGRNAAITSEYAGTTRDVIEVRMDLAGL 261 Query: 252 PIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDAT----IPFEKQDLRIV 307 P+ + DTAG+R + +E ++ + + + + L + +PF DL + Sbjct: 262 PVTLLDTAGLRDTD---DHVEGIGIQLAQERANAADIRVFLAEENETFDVPFRDGDLSL- 317 Query: 308 DSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDL 367 L K D D ISG+TG+G+DDL Sbjct: 318 -------------LPKADER----------------------DATRGAISGKTGQGIDDL 342 Query: 368 M 368 + Sbjct: 343 V 343 Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 25/60 (41%), Positives = 38/60 (63%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + +AIVG+PNVGKSTL N L + A+ + G TRD + + + G+ ++DTAG+ D Sbjct: 214 FEVAIVGSPNVGKSTLLNALAGRNAAITSEYAGTTRDVIEVRMDLAGLPVTLLDTAGLRD 273 >gi|257455160|ref|ZP_05620398.1| tRNA modification GTPase TrmE [Enhydrobacter aerosaccus SK60] gi|257447493|gb|EEV22498.1| tRNA modification GTPase TrmE [Enhydrobacter aerosaccus SK60] Length = 463 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 49/156 (31%), Positives = 81/156 (51%), Gaps = 6/156 (3%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 ++ I G PN GKS+L NRL ++ A+V + G TRD L ++NG+ N+ DTAG+ Sbjct: 225 SVVIAGRPNAGKSSLLNRLAGQERAIVTDIAGTTRDILQETIVLNGLTLNLTDTAGLRQT 284 Query: 64 KNCSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNI-PIIIVSNKM 121 + I +Q ++ AI +A L+L + D+ P A F N I++++NK+ Sbjct: 285 DD--IVEQAGIERARQAITQADLLLMVYDAHREHEPLRLATELFGSLPNANSILMIANKI 342 Query: 122 DTRIAQRNFYEIYSLDFK--EIVEISAEHDLGTSEL 155 D +N + +S + V +S ++D G EL Sbjct: 343 DLSDNHQNLPKQFSSQEQIYHPVYVSCKYDTGLEEL 378 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 37/131 (28%), Positives = 71/131 (54%), Gaps = 8/131 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 + + GRPN GKS+L+NRL G R + +G TRD + + + + DTAG+R+ Sbjct: 226 VVIAGRPNAGKSSLLNRLAGQERAIVTDIAGTTRDILQETIVLNGLTLNLTDTAGLRQTD 285 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNT---GHAVVLALN 322 I +EQ ++++ Q++ + +++ DA E + LR+ +F + +++++ N Sbjct: 286 DI---VEQAGIERARQAITQADLLLMVYDA--HREHEPLRLATELFGSLPNANSILMIAN 340 Query: 323 KWDMVSDKLNL 333 K D+ + NL Sbjct: 341 KIDLSDNHQNL 351 >gi|312885532|ref|ZP_07745170.1| tRNA modification GTPase trmE [Mucilaginibacter paludis DSM 18603] gi|311302000|gb|EFQ79031.1| tRNA modification GTPase trmE [Mucilaginibacter paludis DSM 18603] Length = 468 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 83/161 (51%), Gaps = 14/161 (8%) Query: 208 VVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRI 267 + GRPN GKSTL+N LL +R + +G TRD++ N + DTAG+R+ Sbjct: 234 IAGRPNAGKSTLLNALLNEDRAIVSHIAGTTRDTIEEILNINGINFRLVDTAGLREA--- 290 Query: 268 TESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRI-VDSVFNTGHAVVLALNKWDM 326 T+++E V+K+++ + + + DA D+ + ++++ + G VV NK D+ Sbjct: 291 TDTIEAIGVQKTLEKISQSALLLYVFDAE-AMTGADVALDLENLLHPGVPVVAVANKIDL 349 Query: 327 VSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDL 367 +SD + A NLP ++ + T+S R + +D L Sbjct: 350 LSDG-------KLAAGFNLP--AEVELITVSAREKQHIDQL 381 Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 49/156 (31%), Positives = 85/156 (54%), Gaps = 5/156 (3%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 I G PN GKSTL N L+ + A+V + G TRD + ING+ F +VDTAG+ + + Sbjct: 234 IAGRPNAGKSTLLNALLNEDRAIVSHIAGTTRDTIEEILNINGINFRLVDTAGLREATDT 293 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAIT-SFLRKKNIPIIIVSNKMDTRI 125 A + E I+++ L+L++ D++A +T D A+ L +P++ V+NK+D + Sbjct: 294 IEAIGVQKTLE-KISQSALLLYVFDAEA-MTGADVALDLENLLHPGVPVVAVANKIDL-L 350 Query: 126 AQRNFYEIYSLDFK-EIVEISAEHDLGTSELHSVIF 160 + ++L + E++ +SA +L VI+ Sbjct: 351 SDGKLAAGFNLPAEVELITVSAREKQHIDQLKQVIY 386 >gi|225024666|ref|ZP_03713858.1| hypothetical protein EIKCOROL_01548 [Eikenella corrodens ATCC 23834] gi|224942555|gb|EEG23764.1| hypothetical protein EIKCOROL_01548 [Eikenella corrodens ATCC 23834] Length = 304 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 48/176 (27%), Positives = 83/176 (47%), Gaps = 7/176 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N L+ +K+++ TR ++ G F VDT G Sbjct: 20 VAIVGRPNVGKSTLMNHLIGQKISITSKKAQTTRHKITGVYTDERSQFIFVDTPGFQTRH 79 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 ++ ++N AI ++ F++++ + D A+ L K++P+I+V NK+D Sbjct: 80 RNALNDRLNQNVTEAIGGVDVVAFVVEAMR-FSEADRAVIRLL-PKHLPVILVVNKIDRA 137 Query: 125 IAQRNFYEIY-----SLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 ++ E DF +SA+H L EL + + + P +P + + Sbjct: 138 NSKAELEEFIETVCREFDFAGAEAVSAKHGLRIGELLARLRPHLPESVPLYPEDAV 193 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 36/134 (26%), Positives = 67/134 (50%), Gaps = 4/134 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VGRPNVGKSTL+N L+G +T ++ TR ++ + + DT G + + Sbjct: 20 VAIVGRPNVGKSTLMNHLIGQKISITSKKAQTTRHKITGVYTDERSQFIFVDTPGFQ--T 77 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 R +L + + +++ + +++A + F + D R V + V+L +NK D Sbjct: 78 RHRNALNDRLNQNVTEAIGGVDVVAFVVEA-MRFSEAD-RAVIRLLPKHLPVILVVNKID 135 Query: 326 MVSDKLNLLQDLRT 339 + K L + + T Sbjct: 136 RANSKAELEEFIET 149 >gi|218960498|ref|YP_001740273.1| tRNA modification GTPase trmE [Candidatus Cloacamonas acidaminovorans] gi|167729155|emb|CAO80066.1| tRNA modification GTPase trmE [Candidatus Cloacamonas acidaminovorans] Length = 457 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 46/136 (33%), Positives = 74/136 (54%), Gaps = 10/136 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 I + GAPNVGKS+LFN L+++ A+V HPG TRD L +NG I DTAG+ + Sbjct: 223 ICLTGAPNVGKSSLFNALLQQNRAIVTPHPGTTRDYLEEYLSLNGFPIVIYDTAGLREFP 282 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIP------IIIVS 118 + I K+ ++ + E+ LIL+L+++ P + + L +IP ++V Sbjct: 283 D-DIEKEGITKSYELMQESDLILYLVEATTVTNP-NLQFSDLLSPSSIPPDLHSKTLVVF 340 Query: 119 NKMDTRIAQRNFYEIY 134 +K D + Q N +I+ Sbjct: 341 SKAD--LMQENTPQIF 354 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 64/226 (28%), Positives = 103/226 (45%), Gaps = 40/226 (17%) Query: 187 ENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISW 246 E + S G+ + + + ++I + G PNVGKS+L N LL NR + G TRD + Sbjct: 205 EELKSTGEQG-RRLREGIKICLTGAPNVGKSSLFNALLQQNRAIVTPHPGTTRDYLEEYL 263 Query: 247 NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP----FEKQ 302 + PI I+DTAG+R+ + +E++ + KS + ++ + + L++AT + Sbjct: 264 SLNGFPIVIYDTAGLRE---FPDDIEKEGITKSYELMQESDLILYLVEATTVTNPNLQFS 320 Query: 303 DLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQI-GDIYINTISGRTG 361 DL S+ H+ L +V K +L+Q+ N PQI IY + I T Sbjct: 321 DLLSPSSIPPDLHSKTL------VVFSKADLMQE-------NTPQIFPGIYCSVI---TE 364 Query: 362 EGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRY 407 GL DL T + + T+L N P I NR+ Sbjct: 365 NGLKDL---------------TDAISKRLMLNTELPNKPIIINNRH 395 >gi|83593186|ref|YP_426938.1| GTP-binding protein Era [Rhodospirillum rubrum ATCC 11170] gi|83576100|gb|ABC22651.1| GTP-binding protein Era [Rhodospirillum rubrum ATCC 11170] Length = 309 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 53/179 (29%), Positives = 83/179 (46%), Gaps = 11/179 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A++GAPN GKSTL NRLV K+ +V TR R+ G A++ VDT GI + Sbjct: 20 VAVIGAPNAGKSTLVNRLVGSKVTIVSPKVQTTRSRVRGIAMVGEAQVVFVDTPGIFQPR 79 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + E A+ EA L+L +ID+ GIT I + L+ ++ NK+D Sbjct: 80 KRFDRAMVAAAWEGAL-EADLVLLVIDAHKGITAEVEEILTKLKATGRRALLALNKVDA- 137 Query: 125 IAQRNFYEIYS-----LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 + + E+ S L F+++ ISA G + + ++ P P E+ Sbjct: 138 LERSRLLEMASRLDAALPFEKVFMISALTGSGCDD----VLAWLAERVPAGPWMFPEDE 192 Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 45/168 (26%), Positives = 81/168 (48%), Gaps = 8/168 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +AV+G PN GKSTL+NRL+G + + TR V + DT G+ +P Sbjct: 20 VAVIGAPNAGKSTLVNRLVGSKVTIVSPKVQTTRSRVRGIAMVGEAQVVFVDTPGIFQPR 79 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + ++ V + + + ++++DA + I+ + TG +LALNK D Sbjct: 80 K---RFDRAMVAAAWEGALEADLVLLVIDAHKGITAEVEEILTKLKATGRRALLALNKVD 136 Query: 326 MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 + ++ LL+ + ++ LP +++ IS TG G DD++ + E Sbjct: 137 AL-ERSRLLE-MASRLDAALP-FEKVFM--ISALTGSGCDDVLAWLAE 179 >gi|292493916|ref|YP_003529355.1| tRNA modification GTPase TrmE [Nitrosococcus halophilus Nc4] gi|291582511|gb|ADE16968.1| tRNA modification GTPase TrmE [Nitrosococcus halophilus Nc4] Length = 458 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 41/118 (34%), Positives = 63/118 (53%), Gaps = 2/118 (1%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + +VG PNVGKS+L NRL + A+V + PG TRD L I+G+ + DTAG+ D Sbjct: 227 VVLVGRPNVGKSSLHNRLAGFEAAIVTDVPGTTRDLLREHITIDGLPIRLSDTAGLHDSM 286 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + + M E N H +L + D + G+T + +I L N+ ++ NK+D Sbjct: 287 DIIEQEGMRRTREEFTNADH-VLLIADDQVGLTELEQSILGEL-PDNVSHTLILNKID 342 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 36/128 (28%), Positives = 66/128 (51%), Gaps = 6/128 (4%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + +R+ +VGRPNVGKS+L NRL G+ + G TRD + PI + DTA Sbjct: 221 LREGIRVVLVGRPNVGKSSLHNRLAGFEAAIVTDVPGTTRDLLREHITIDGLPIRLSDTA 280 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSV-FNTGHAVV 318 G+ I +EQ+ ++++ + + +++ D + + + I+ + N H ++ Sbjct: 281 GLHDSMDI---IEQEGMRRTREEFTNADHVLLIADDQVGLTELEQSILGELPDNVSHTLI 337 Query: 319 LALNKWDM 326 LNK D+ Sbjct: 338 --LNKIDL 343 >gi|218281199|ref|ZP_03487723.1| hypothetical protein EUBIFOR_00286 [Eubacterium biforme DSM 3989] gi|218217587|gb|EEC91125.1| hypothetical protein EUBIFOR_00286 [Eubacterium biforme DSM 3989] Length = 283 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 3/123 (2%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PNVGKS+L N L+++ A+V + G TRD + GQ I V N++DTAGI + N Sbjct: 64 IVGKPNVGKSSLLNALLEEDKAIVTDIAGTTRDLVEGQIHIGSVQLNLIDTAGIRES-ND 122 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 I + ++++ + +A L+L + D + D + + K +I+ NK+D A Sbjct: 123 KIEQIGIEKSQEKLKDAKLVLLVFDGSKELDEEDKQLLELTKDK--MRLIIYNKLDKAEA 180 Query: 127 QRN 129 ++ Sbjct: 181 NKD 183 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/109 (26%), Positives = 65/109 (59%), Gaps = 3/109 (2%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + K + +VG+PNVGKS+L+N LL ++ + +G TRD V + + + + DTA Sbjct: 56 LKKGIDTIIVGKPNVGKSSLLNALLEEDKAIVTDIAGTTRDLVEGQIHIGSVQLNLIDTA 115 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVD 308 G+R+ + + +EQ ++KS + ++ + +++ D + +++D ++++ Sbjct: 116 GIRESN---DKIEQIGIEKSQEKLKDAKLVLLVFDGSKELDEEDKQLLE 161 >gi|149197584|ref|ZP_01874634.1| tRNA modification GTPase [Lentisphaera araneosa HTCC2155] gi|149139154|gb|EDM27557.1| tRNA modification GTPase [Lentisphaera araneosa HTCC2155] Length = 452 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 61/250 (24%), Positives = 113/250 (45%), Gaps = 42/250 (16%) Query: 192 EGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNH 251 EG+ + + +++ + G PN GKS+L+N +LG +R + +G TRD++ + Sbjct: 207 EGRKDGEVLRDGVKVIIGGPPNAGKSSLMNHVLGRDRAIVTDIAGTTRDTLEEYTRIRGI 266 Query: 252 PIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVF 311 P++I DTAG+R+ I +E+ +++S Q+++ + + L+D + P E Q + F Sbjct: 267 PLKITDTAGIREAEDI---VERTGIERSKQALKEAQLILWLMDLSRPLEDQ---LPPEDF 320 Query: 312 NTGHAVVLALNKWDMV-----------------------SDKLNLLQDLRTKAI--KNLP 346 + +++ LNK D+ D LN L DL +A+ ++ Sbjct: 321 KSDAPLIVILNKSDIALEQELPSYFNQSHVSHVRVSVKSEDNLNRLYDLIEEAVWQEDHH 380 Query: 347 QIGDIYINTISG----RTGEGLDDLMVSVLEINKLWK-----TRITTSYLNSWLQKTQLQ 397 I D+ +N G + + +DD + + W+ R L L T + Sbjct: 381 HIPDVAVNARHGVLLEQAVQQIDDCQACI--DGEAWELVSVHLRGALDPLGEILGLTLMP 438 Query: 398 NPPPTIFNRY 407 + TIF RY Sbjct: 439 DILHTIFGRY 448 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 40/124 (32%), Positives = 67/124 (54%), Gaps = 4/124 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + I G PN GKS+L N ++ + A+V + G TRD L I G+ I DTAGI + + Sbjct: 221 VIIGGPPNAGKSSLMNHVLGRDRAIVTDIAGTTRDTLEEYTRIRGIPLKITDTAGIREAE 280 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + + ++++ A+ EA LIL+L+D P + + K + P+I++ NK D Sbjct: 281 DI-VERTGIERSKQALKEAQLILWLMDLS---RPLEDQLPPEDFKSDAPLIVILNKSDIA 336 Query: 125 IAQR 128 + Q Sbjct: 337 LEQE 340 >gi|94265607|ref|ZP_01289351.1| Small GTP-binding protein domain:GTP-binding:GTP-binding protein Era [delta proteobacterium MLMS-1] gi|93453886|gb|EAT04244.1| Small GTP-binding protein domain:GTP-binding:GTP-binding protein Era [delta proteobacterium MLMS-1] Length = 299 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 50/153 (32%), Positives = 81/153 (52%), Gaps = 18/153 (11%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIV--DTAGIAD 62 +A++GAPN GKSTL NRL+ +K+A+V P TR+R+ G ++N + +V DT G+ Sbjct: 14 VALIGAPNAGKSTLLNRLLGQKIAIVTPKPQTTRNRILG--VVNHRDYQMVLLDTPGLHR 71 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLID--SKAGITPYDHAITSFLRKKNIPIIIVSNK 120 KN + +M A E ++ +L+D S+ HA LR+ P +++ NK Sbjct: 72 AKN-RLNSEMVRLARNAAGEVDVVAYLVDVSSETEAEQRRHA-QKLLREAGKPALLLGNK 129 Query: 121 MDTRIAQRNFY-------EIYSLDFKEIVEISA 146 +D RI + E+Y F+ I+ +SA Sbjct: 130 ID-RIGKEKLLPLIAAWQEVYP--FQAIIPLSA 159 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 23/166 (13%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++G PN GKSTL+NRLLG + + TR+ + N +++ + + DT G+ Sbjct: 14 VALIGAPNAGKSTLLNRLLGQKIAIVTPKPQTTRNRILGVVNHRDYQMVLLDTPGLH--- 70 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVF-NTGHAVVLALNKW 324 R L + V+ + + + L+D + E + R + G +L NK Sbjct: 71 RAKNRLNSEMVRLARNAAGEVDVVAYLVDVSSETEAEQRRHAQKLLREAGKPALLLGNKI 130 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIG---DIY----INTISGRTGEG 363 D + + K LP I ++Y I +S TGEG Sbjct: 131 DRIGKE------------KLLPLIAAWQEVYPFQAIIPLSALTGEG 164 >gi|225575683|ref|ZP_03784293.1| hypothetical protein RUMHYD_03776 [Blautia hydrogenotrophica DSM 10507] gi|225037100|gb|EEG47346.1| hypothetical protein RUMHYD_03776 [Blautia hydrogenotrophica DSM 10507] Length = 364 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 39/129 (30%), Positives = 72/129 (55%), Gaps = 7/129 (5%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K I + ++ ++G+PN GKS+L+N L+G N+ + +G TRD + ++I D Sbjct: 215 KMIREGIQTVILGKPNAGKSSLLNLLIGENKAIVTDIAGTTRDVLEECITLSGISLKIID 274 Query: 258 TAGMRKPSRITESL-EQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHA 316 TAG+R TE L EQ V K+ + + + + ++D+++P ++ D +I++ G Sbjct: 275 TAGIRD----TEDLVEQIGVDKAKEMGKEADLILYVVDSSVPLDENDEKIIE--MMEGKQ 328 Query: 317 VVLALNKWD 325 ++ LNK D Sbjct: 329 AIVLLNKTD 337 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 41/117 (35%), Positives = 65/117 (55%), Gaps = 5/117 (4%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 I+G PN GKS+L N L+ + A+V + G TRD L ++G+ I+DTAGI D ++ Sbjct: 225 ILGKPNAGKSSLLNLLIGENKAIVTDIAGTTRDVLEECITLSGISLKIIDTAGIRDTED- 283 Query: 67 SIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + +Q+ D+ + EA LIL+++DS + D I + K I++ NK D Sbjct: 284 -LVEQIGVDKAKEMGKEADLILYVVDSSVPLDENDEKIIEMMEGKQ--AIVLLNKTD 337 >gi|312863009|ref|ZP_07723247.1| ribosome biogenesis GTPase Era [Streptococcus vestibularis F0396] gi|322517151|ref|ZP_08070035.1| GTP-binding protein Era [Streptococcus vestibularis ATCC 49124] gi|311100545|gb|EFQ58750.1| ribosome biogenesis GTPase Era [Streptococcus vestibularis F0396] gi|322124301|gb|EFX95812.1| GTP-binding protein Era [Streptococcus vestibularis ATCC 49124] Length = 299 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 48/178 (26%), Positives = 86/178 (48%), Gaps = 5/178 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKST N ++ +K+A++ + TR+++ G +DT GI K Sbjct: 8 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTEKEQIVFIDTPGIHKPK 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 ++ M + + E +LF++ + D I L++ +P+I+V NK+D Sbjct: 68 -TALGDFMVESAYSTLREVDTVLFMVPADEPRGKGDDMIIERLKQAKVPVILVVNKIDKV 126 Query: 125 IAQRNFYEI----YSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 + +I +DFKEI+ ISA S L V+ ++ + P + I ++ Sbjct: 127 HPDQLLEQIDDFRKQMDFKEIIPISALQGNNVSHLVDVLSDNLEEGFQYFPSDQITDH 184 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKST +N ++G + ++ TR+ + + + I DT G+ KP Sbjct: 8 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTEKEQIVFIDTPGIHKPK 67 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +L V+ + ++R +T + ++ A P K D I++ + V+L +NK D Sbjct: 68 T---ALGDFMVESAYSTLREVDTVLFMVPADEPRGKGDDMIIERLKQAKVPVILVVNKID 124 Query: 326 MV 327 V Sbjct: 125 KV 126 >gi|94266754|ref|ZP_01290422.1| Small GTP-binding protein domain:GTP-binding:GTP-binding protein Era [delta proteobacterium MLMS-1] gi|94270658|ref|ZP_01291794.1| Small GTP-binding protein domain:GTP-binding:GTP-binding protein Era [delta proteobacterium MLMS-1] gi|93450717|gb|EAT01793.1| Small GTP-binding protein domain:GTP-binding:GTP-binding protein Era [delta proteobacterium MLMS-1] gi|93452576|gb|EAT03153.1| Small GTP-binding protein domain:GTP-binding:GTP-binding protein Era [delta proteobacterium MLMS-1] Length = 299 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 50/153 (32%), Positives = 81/153 (52%), Gaps = 18/153 (11%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIV--DTAGIAD 62 +A++GAPN GKSTL NRL+ +K+A+V P TR+R+ G ++N + +V DT G+ Sbjct: 14 VALIGAPNAGKSTLLNRLLGQKIAIVTPKPQTTRNRILG--VVNHRDYQMVLLDTPGLHR 71 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLID--SKAGITPYDHAITSFLRKKNIPIIIVSNK 120 KN + +M A E ++ +L+D S+ HA LR+ P +++ NK Sbjct: 72 AKN-RLNSEMVRLARNAAGEVDVVAYLVDVSSETEAEQRRHA-QKLLREAGKPALLLGNK 129 Query: 121 MDTRIAQRNFY-------EIYSLDFKEIVEISA 146 +D RI + E+Y F+ I+ +SA Sbjct: 130 ID-RIGKEKLLPLIAAWQEVYP--FQAIIPLSA 159 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 23/166 (13%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++G PN GKSTL+NRLLG + + TR+ + N +++ + + DT G+ Sbjct: 14 VALIGAPNAGKSTLLNRLLGQKIAIVTPKPQTTRNRILGVVNHRDYQMVLLDTPGLH--- 70 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVF-NTGHAVVLALNKW 324 R L + V+ + + + L+D + E + R + G +L NK Sbjct: 71 RAKNRLNSEMVRLARNAAGEVDVVAYLVDVSSETEAEQRRHAQKLLREAGKPALLLGNKI 130 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIG---DIY----INTISGRTGEG 363 D + + K LP I ++Y I +S TGEG Sbjct: 131 DRIGKE------------KLLPLIAAWQEVYPFQAIIPLSALTGEG 164 >gi|163845608|ref|YP_001633652.1| GTP-binding protein Era [Chloroflexus aurantiacus J-10-fl] gi|163666897|gb|ABY33263.1| GTP-binding protein Era [Chloroflexus aurantiacus J-10-fl] Length = 469 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 53/184 (28%), Positives = 88/184 (47%), Gaps = 9/184 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTL N L+ +K+A+V P TR + G G +DT GI + Sbjct: 179 VALVGKPNVGKSTLLNALLGEKVAIVSPRPQTTRVPVRGILSRPGEQIIFIDTPGIHEPS 238 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + K M + E + A +I F++D T D I +++ ++V NK+D + Sbjct: 239 H-RLGKLMVELAERTLPNADVICFMVDISQPPTRLDRMIAQQVQRARGHKLLVLNKVDQK 297 Query: 125 IAQRNFYEIYSLDFKEI------VEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 + E Y ++E+ + ISA LG + L S I + P +PL+ + + Sbjct: 298 PKRPG--ENYLPAYRELGQWEMEIAISARRRLGLTALLSEISARLPEGPPLYPLDQMTDQ 355 Query: 179 KRNE 182 + Sbjct: 356 TEQQ 359 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 57/120 (47%), Gaps = 3/120 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VG+PNVGKSTL+N LLG + + TR V + I DT G+ +PS Sbjct: 179 VALVGKPNVGKSTLLNALLGEKVAIVSPRPQTTRVPVRGILSRPGEQIIFIDTPGIHEPS 238 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + V+ + +++ + ++D + P + D I V +L LNK D Sbjct: 239 H---RLGKLMVELAERTLPNADVICFMVDISQPPTRLDRMIAQQVQRARGHKLLVLNKVD 295 >gi|218247339|ref|YP_002372710.1| GTP-binding protein Era [Cyanothece sp. PCC 8801] gi|226741204|sp|B7K414|ERA_CYAP8 RecName: Full=GTPase Era gi|218167817|gb|ACK66554.1| GTP-binding protein Era [Cyanothece sp. PCC 8801] Length = 314 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 53/173 (30%), Positives = 85/173 (49%), Gaps = 14/173 (8%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 + ++GRPNVGKSTL+N+L+G +T S TR+ + + I DT G+ KP Sbjct: 25 VGIIGRPNVGKSTLMNQLVGQKIAITSPVSQTTRNRLRGILTTEEAQIIFVDTPGIHKPH 84 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + V+ + ++ + +V++D++I D IV+ + NT V+L LNK D Sbjct: 85 H---QLGKILVQNAEAAINAVDIILVVVDSSIEAGGGDRYIVELLENTETPVILGLNKSD 141 Query: 326 MVSDKLNLLQD--LRTKAIKNLPQIGDIYINTISGRTGEGLDDL---MVSVLE 373 + + L N P I S TGEGLD+L ++++LE Sbjct: 142 QQPQNYQPIDESYLVLAQAHNWPVI------KFSALTGEGLDNLQKTLINLLE 188 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 42/120 (35%), Positives = 58/120 (48%), Gaps = 1/120 (0%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + I+G PNVGKSTL N+LV +K+A+ TR+RL G VDT GI Sbjct: 25 VGIIGRPNVGKSTLMNQLVGQKIAITSPVSQTTRNRLRGILTTEEAQIIFVDTPGIHK-P 83 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + K + E AIN +IL ++DS D I L P+I+ NK D + Sbjct: 84 HHQLGKILVQNAEAAINAVDIILVVVDSSIEAGGGDRYIVELLENTETPVILGLNKSDQQ 143 >gi|212217715|ref|YP_002304502.1| tRNA modification GTPase TrmE [Coxiella burnetii CbuK_Q154] gi|212011977|gb|ACJ19357.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase [Coxiella burnetii CbuK_Q154] Length = 473 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 40/121 (33%), Positives = 70/121 (57%), Gaps = 3/121 (2%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+ I G PNVGKS+L N L ++ A+V + G TRD + I+G+ ++VDTAG+ Sbjct: 239 TVVIAGEPNVGKSSLLNLLSGQETAIVTDIAGTTRDIIRESIHIDGLPIHVVDTAGLRLT 298 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKN--IPIIIVSNKM 121 ++ + K+ +T+ A+ +A L+L +ID+ + I + + + IP +I+ NK+ Sbjct: 299 EDV-VEKEGVRRTQKAVQQADLLLLMIDASKPTEDFKKIIAQWFSENDNKIPTLIIENKI 357 Query: 122 D 122 D Sbjct: 358 D 358 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 51/198 (25%), Positives = 93/198 (46%), Gaps = 30/198 (15%) Query: 114 IIIVSNKMDTRIAQRNFYEIYSLDFKEIVE--------ISAEHDLGTSELHSVIFKIFKQ 165 +I S++ R A R+ +S ++V+ I A D E+ + + K+ Sbjct: 153 LINASSEQAARSAMRSLQGEFSKRIHQLVDALIQLRMYIEASIDFPEEEIDFLADERIKE 212 Query: 166 KYPN--HPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRL 223 N H ++ IE + +E IT + + G PNVGKS+L+N L Sbjct: 213 TLENLTHQVQEIEKTAKQGALLREGIT---------------VVIAGEPNVGKSSLLNLL 257 Query: 224 LGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITES-LEQKTVKKSMQS 282 G + +G TRD + S + PI + DTAG+ R+TE +E++ V+++ ++ Sbjct: 258 SGQETAIVTDIAGTTRDIIRESIHIDGLPIHVVDTAGL----RLTEDVVEKEGVRRTQKA 313 Query: 283 VRTCETTIVLLDATIPFE 300 V+ + ++++DA+ P E Sbjct: 314 VQQADLLLLMIDASKPTE 331 >gi|153815417|ref|ZP_01968085.1| hypothetical protein RUMTOR_01652 [Ruminococcus torques ATCC 27756] gi|145847276|gb|EDK24194.1| hypothetical protein RUMTOR_01652 [Ruminococcus torques ATCC 27756] Length = 465 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 49/175 (28%), Positives = 93/175 (53%), Gaps = 14/175 (8%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 I + ++ +VG+PN GKS+L+N L G+ R + G TRD + + + + DTA Sbjct: 224 IKEGIKTVIVGKPNAGKSSLLNVLAGHERAIVTDIEGTTRDVLEETIKLGGLNLNVVDTA 283 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R+ + E + V K+++ T + I ++DA+ ++ D +I++ + + ++VL Sbjct: 284 GIRQTEDLIEKI---GVDKALEYAETADLIIYVVDASRSLDENDEKIINMISDK-KSIVL 339 Query: 320 ALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEI 374 LNK D+ D + + ++ K + N+P I +IS + G+ DL V E+ Sbjct: 340 -LNKSDI--DTVISAEHIKEK-VSNIPII------SISAKEERGIKDLEDKVKEM 384 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 48/157 (30%), Positives = 80/157 (50%), Gaps = 3/157 (1%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PN GKS+L N L + A+V + G TRD L + G+ N+VDTAGI ++ Sbjct: 232 IVGKPNAGKSSLLNVLAGHERAIVTDIEGTTRDVLEETIKLGGLNLNVVDTAGIRQTEDL 291 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 I K D+ A LI++++D+ + D I + + K +++ + +DT I+ Sbjct: 292 -IEKIGVDKALEYAETADLIIYVVDASRSLDENDEKIINMISDKKSIVLLNKSDIDTVIS 350 Query: 127 QRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 + E S I+ ISA+ + G +L + ++F Sbjct: 351 AEHIKEKVS--NIPIISISAKEERGIKDLEDKVKEMF 385 >gi|55822589|ref|YP_141030.1| GTP-binding protein Era [Streptococcus thermophilus CNRZ1066] gi|55738574|gb|AAV62215.1| GTP-binding protein [Streptococcus thermophilus CNRZ1066] Length = 299 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 49/179 (27%), Positives = 86/179 (48%), Gaps = 7/179 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKST N ++ +K+A++ + TR+++ G + +DT GI K Sbjct: 8 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 ++ M + + E +LF++ + D I L++ +P+I+V NK+D R Sbjct: 68 -TALGDFMVESAYSTLREVDTVLFMVPADEPRGKGDDMIIERLKQAKVPVILVVNKID-R 125 Query: 125 IAQRNFYEIYS-----LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 + E +DFKEI+ ISA S L V ++ + P + I ++ Sbjct: 126 VHPDQLLEQIDDFRKQMDFKEIIPISALQGNNVSHLVDVSSDYLEEGFQYFPSDQITDH 184 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKST +N ++G + ++ TR+ + + I DT G+ KP Sbjct: 8 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +L V+ + ++R +T + ++ A P K D I++ + V+L +NK D Sbjct: 68 T---ALGDFMVESAYSTLREVDTVLFMVPADEPRGKGDDMIIERLKQAKVPVILVVNKID 124 Query: 326 MV 327 V Sbjct: 125 RV 126 >gi|328947106|ref|YP_004364443.1| tRNA modification GTPase mnmE [Treponema succinifaciens DSM 2489] gi|328447430|gb|AEB13146.1| tRNA modification GTPase mnmE [Treponema succinifaciens DSM 2489] Length = 462 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 51/165 (30%), Positives = 90/165 (54%), Gaps = 23/165 (13%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA--- 61 + + G N GKS+LFN L+K++ A+V + G TRD L G+ + DTAG+ Sbjct: 229 VVLCGKTNAGKSSLFNSLLKEERAIVSSIEGTTRDWLECWTDFAGIPVRLFDTAGLRKTS 288 Query: 62 ---DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLR-KKNIPIIIV 117 + + +AK ++ +A +IL+++DS GI D F+ +KNIP+++V Sbjct: 289 DLIEERGVELAKDLS-------QDADVILYIVDSSKGILKDD---LDFIESQKNIPVVLV 338 Query: 118 SNKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKI 162 NK D+ N I + +K+ V+ISA++++G + ++FK+ Sbjct: 339 LNKCDS--FDLNLDGIKKV-WKDSVKISAKNNIG---IELLVFKV 377 Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 40/121 (33%), Positives = 66/121 (54%), Gaps = 5/121 (4%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP 264 R+ + G+ N GKS+L N LL R + S G TRD + ++ P+ +FDTAG+RK Sbjct: 228 RVVLCGKTNAGKSSLFNSLLKEERAIVSSIEGTTRDWLECWTDFAGIPVRLFDTAGLRKT 287 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 S + +E++ V+ + + + + ++D++ K DL ++S N VVL LNK Sbjct: 288 SDL---IEERGVELAKDLSQDADVILYIVDSSKGILKDDLDFIESQKNI--PVVLVLNKC 342 Query: 325 D 325 D Sbjct: 343 D 343 >gi|317500879|ref|ZP_07959091.1| tRNA modification GTPase TrmE [Lachnospiraceae bacterium 8_1_57FAA] gi|316897759|gb|EFV19818.1| tRNA modification GTPase TrmE [Lachnospiraceae bacterium 8_1_57FAA] Length = 465 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 49/175 (28%), Positives = 93/175 (53%), Gaps = 14/175 (8%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 I + ++ +VG+PN GKS+L+N L G+ R + G TRD + + + + DTA Sbjct: 224 IKEGIKTVIVGKPNAGKSSLLNVLAGHERAIVTDIEGTTRDVLEETIKLGGLNLNVVDTA 283 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R+ + E + V K+++ T + I ++DA+ ++ D +I++ + + ++VL Sbjct: 284 GIRQTEDLIEKI---GVDKALEYAETADLIIYVVDASRSLDENDEKIINMISDK-KSIVL 339 Query: 320 ALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEI 374 LNK D+ D + + ++ K + N+P I +IS + G+ DL V E+ Sbjct: 340 -LNKSDI--DTVISAEHIKEK-VSNIPII------SISAKEERGIKDLEDKVKEM 384 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 48/157 (30%), Positives = 80/157 (50%), Gaps = 3/157 (1%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PN GKS+L N L + A+V + G TRD L + G+ N+VDTAGI ++ Sbjct: 232 IVGKPNAGKSSLLNVLAGHERAIVTDIEGTTRDVLEETIKLGGLNLNVVDTAGIRQTEDL 291 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 I K D+ A LI++++D+ + D I + + K +++ + +DT I+ Sbjct: 292 -IEKIGVDKALEYAETADLIIYVVDASRSLDENDEKIINMISDKKSIVLLNKSDIDTVIS 350 Query: 127 QRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 + E S I+ ISA+ + G +L + ++F Sbjct: 351 AEHIKEKVS--NIPIISISAKEERGIKDLEDKVKEMF 385 >gi|291541857|emb|CBL14967.1| tRNA modification GTPase TrmE [Ruminococcus bromii L2-63] Length = 455 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 56/212 (26%), Positives = 103/212 (48%), Gaps = 16/212 (7%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + K + + GRPNVGKSTL+N L GY + + G TRD V + + + + DTA Sbjct: 217 VKKGIDTVIAGRPNVGKSTLMNLLSGYEKSIVTDIPGTTRDIVEDTVTVGDVVLNLSDTA 276 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R +++E+ V ++ + + C + + D + ++ D +++S V Sbjct: 277 GLRDTE---DTVEKIGVDRARKRLEQCGLLLAVFDNSRELDEDDYALIESAKLVPSIAV- 332 Query: 320 ALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWK 379 +NK D+ +KL++ + +K IK YI IS +G+G D+L +V +I Sbjct: 333 -INKTDL-DNKLDI--EYISKNIK--------YIVYISAISGDGRDELTKAVEKIAGTQN 380 Query: 380 TRITTSYLNSWLQKTQLQNPPPTIFNRYNRLK 411 + L++ Q+ ++N ++ N LK Sbjct: 381 FNPSEGVLSNERQRIAVKNALDSVVEAMNALK 412 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 59/185 (31%), Positives = 92/185 (49%), Gaps = 6/185 (3%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 I G PNVGKSTL N L + ++V + PG TRD + + V+ N+ DTAG+ D ++ Sbjct: 225 IAGRPNVGKSTLMNLLSGYEKSIVTDIPGTTRDIVEDTVTVGDVVLNLSDTAGLRDTED- 283 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 ++ K D+ + + L+L + D+ + D+A+ K +P I V NK D + Sbjct: 284 TVEKIGVDRARKRLEQCGLLLAVFDNSRELDEDDYALIE--SAKLVPSIAVINKTD--LD 339 Query: 127 QRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEESPK 186 + E S + K IV ISA G EL + KI + N P E + +N+R + K Sbjct: 340 NKLDIEYISKNIKYIVYISAISGDGRDELTKAVEKIAGTQNFN-PSEGVLSNERQRIAVK 398 Query: 187 ENITS 191 + S Sbjct: 399 NALDS 403 >gi|257061326|ref|YP_003139214.1| GTP-binding protein Era [Cyanothece sp. PCC 8802] gi|256591492|gb|ACV02379.1| GTP-binding protein Era [Cyanothece sp. PCC 8802] Length = 314 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 53/173 (30%), Positives = 85/173 (49%), Gaps = 14/173 (8%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 + ++GRPNVGKSTL+N+L+G +T S TR+ + + I DT G+ KP Sbjct: 25 VGIIGRPNVGKSTLMNQLVGQKIAITSPVSQTTRNRLRGILTTEEAQIIFVDTPGIHKPH 84 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + V+ + ++ + +V++D++I D IV+ + NT V+L LNK D Sbjct: 85 H---QLGKILVQNAEAAINAVDIILVVVDSSIEAGGGDRYIVELLENTETPVILGLNKSD 141 Query: 326 MVSDKLNLLQD--LRTKAIKNLPQIGDIYINTISGRTGEGLDDL---MVSVLE 373 + + L N P I S TGEGLD+L ++++LE Sbjct: 142 QQPQNYQPIDESYLVLAQAHNWPVI------KFSALTGEGLDNLQKTLINLLE 188 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 42/120 (35%), Positives = 58/120 (48%), Gaps = 1/120 (0%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + I+G PNVGKSTL N+LV +K+A+ TR+RL G VDT GI Sbjct: 25 VGIIGRPNVGKSTLMNQLVGQKIAITSPVSQTTRNRLRGILTTEEAQIIFVDTPGIHK-P 83 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + K + E AIN +IL ++DS D I L P+I+ NK D + Sbjct: 84 HHQLGKILVQNAEAAINAVDIILVVVDSSIEAGGGDRYIVELLENTETPVILGLNKSDQQ 143 >gi|315634810|ref|ZP_07890092.1| tRNA modification GTPase TrmE [Aggregatibacter segnis ATCC 33393] gi|315476362|gb|EFU67112.1| tRNA modification GTPase TrmE [Aggregatibacter segnis ATCC 33393] Length = 451 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 49/157 (31%), Positives = 80/157 (50%), Gaps = 18/157 (11%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + I G PN GKS+L N L ++ A+V + G TRD L ++G+ +I+DTAG+ D Sbjct: 217 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHLDGMPLHIIDTAGLRDAT 276 Query: 65 N----CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRK--KNIPIIIVS 118 + I++ N+ I +A IL ++DS + FL K NIP+ I+ Sbjct: 277 DEVERIGISRAWNE-----IEQADRILLMLDSSDSEQDLAKVRSEFLAKLPNNIPVTIIR 331 Query: 119 NKMD-----TRIAQRNFYEIYSLDFK--EIVEISAEH 148 NK D R+ +++ Y + +L K + V++ EH Sbjct: 332 NKADLTGETERLYEQDGYTVVNLSAKTQQGVDLLREH 368 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 32/112 (28%), Positives = 60/112 (53%), Gaps = 5/112 (4%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + +++ + GRPN GKS+L+N L G + +G TRD + + P+ I DTA Sbjct: 211 LREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHLDGMPLHIIDTA 270 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVF 311 G+R T+ +E+ + ++ + + +++LD++ +QDL V S F Sbjct: 271 GLRDA---TDEVERIGISRAWNEIEQADRILLMLDSSDS--EQDLAKVRSEF 317 >gi|260911951|ref|ZP_05918515.1| thiophene and furan oxidation protein ThdF [Prevotella sp. oral taxon 472 str. F0295] gi|260633898|gb|EEX52024.1| thiophene and furan oxidation protein ThdF [Prevotella sp. oral taxon 472 str. F0295] Length = 460 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 45/119 (37%), Positives = 70/119 (58%), Gaps = 4/119 (3%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 ++AIVG NVGKSTL NRL+K++ A+V + G TRD + ING+ F +DTAGI Sbjct: 227 SVAIVGKTNVGKSTLLNRLLKEERAIVSDIHGTTRDVIEDTIQINGINFRFIDTAGIRKT 286 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + I ++T + EA ++L++ID ++ + + + R K +I+VSNK D Sbjct: 287 SD-EIESLGIERTYQKLTEAAVVLWVIDKAPSLSEIEE-MDAHTRGKR--LIVVSNKND 341 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 30/74 (40%), Positives = 40/74 (54%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 + I + +A+VG+ NVGKSTL+NRLL R + G TRD + + D Sbjct: 220 RAIKAGISVAIVGKTNVGKSTLLNRLLKEERAIVSDIHGTTRDVIEDTIQINGINFRFID 279 Query: 258 TAGMRKPSRITESL 271 TAG+RK S ESL Sbjct: 280 TAGIRKTSDEIESL 293 >gi|167834937|ref|ZP_02461820.1| tRNA modification GTPase TrmE [Burkholderia thailandensis MSMB43] Length = 467 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 49/188 (26%), Positives = 89/188 (47%), Gaps = 11/188 (5%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + L + + G+PNVGKS+L+N L G + +G TRD V+ + + P+ I DTA Sbjct: 223 LREGLSVVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIVDTA 282 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R+ + +E+ + ++ + + + LLDA D ++ + F G VV Sbjct: 283 GLRETE---DEVEKIGIARTWGEIERADVVLHLLDAR-SGRGPDDEVIAARFPAGVPVVR 338 Query: 320 ALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWK 379 LNK D+ ++ + + D+ +S + G+G+D L +L I W+ Sbjct: 339 VLNKTDLTDAPASVAR------VGGGAACADVCEVRLSAKRGDGIDLLRGELLRIAG-WQ 391 Query: 380 TRITTSYL 387 + YL Sbjct: 392 AGAESVYL 399 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 67/119 (56%), Gaps = 2/119 (1%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 ++ + G PNVGKS+L N L ++A+V G TRD++ + G+ +IVDTAG+ + Sbjct: 228 SVVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIVDTAGLRET 287 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 ++ + K +T I A ++L L+D+++G P D I + +P++ V NK D Sbjct: 288 ED-EVEKIGIARTWGEIERADVVLHLLDARSGRGPDDEVIAARF-PAGVPVVRVLNKTD 344 >gi|75761897|ref|ZP_00741822.1| GTP-binding protein era [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218899466|ref|YP_002447877.1| GTP-binding protein Era [Bacillus cereus G9842] gi|74490605|gb|EAO53896.1| GTP-binding protein era [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218541393|gb|ACK93787.1| GTP-binding protein Era [Bacillus cereus G9842] Length = 301 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 77/147 (52%), Gaps = 7/147 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 ++I+G PNVGKST NR++ +K+A++ + P TR+++ G N +DT GI K Sbjct: 11 VSIIGRPNVGKSTFLNRIIGQKIAIMSDKPQTTRNKIQGVYTENDSQVIFIDTPGIHKPK 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + M + + E ++LF++++ G + I L++ P+ +V NK+D + Sbjct: 71 H-KLGDFMVKMAQTTLKEVDIVLFMVNAVEGFGRGEEFIIEKLKETKQPVFLVINKID-Q 128 Query: 125 IAQRNFYEIYSL-----DFKEIVEISA 146 + E+ +F EIV ISA Sbjct: 129 LHPEQLLELIDQYRKLHEFAEIVPISA 155 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 31/122 (25%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 ++++GRPNVGKST +NR++G + + TR+ + + + + DT G+ KP Sbjct: 11 VSIIGRPNVGKSTFLNRIIGQKIAIMSDKPQTTRNKIQGVYTENDSQVIFIDTPGIHKPK 70 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L VK + +++ + + +++A F + + I++ + T V L +NK D Sbjct: 71 H---KLGDFMVKMAQTTLKEVDIVLFMVNAVEGFGRGEEFIIEKLKETKQPVFLVINKID 127 Query: 326 MV 327 + Sbjct: 128 QL 129 >gi|317060108|ref|ZP_07924593.1| thiophene and furan oxidation protein THDF [Fusobacterium sp. D12] gi|313685784|gb|EFS22619.1| thiophene and furan oxidation protein THDF [Fusobacterium sp. D12] Length = 390 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 41/129 (31%), Positives = 69/129 (53%), Gaps = 4/129 (3%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K I + ++ ++G+PNVGKS+L+N +L R + +G TRD + N K P+ + D Sbjct: 148 KMIKEGVKTVIIGKPNVGKSSLLNSILREERAIVTQVAGTTRDVIEEVINIKGIPLILVD 207 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R + E++ V KS + ++ + + +LDA+ K+D I S V Sbjct: 208 TAGIRDTTDFVENI---GVMKSKEFLQKADLVLFVLDASQELSKEDREIYIS-LQENQKV 263 Query: 318 VLALNKWDM 326 + LNK D+ Sbjct: 264 IGILNKTDL 272 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 54/182 (29%), Positives = 95/182 (52%), Gaps = 16/182 (8%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG-- 63 I+G PNVGKS+L N +++++ A+V G TRD + I G+ +VDTAGI D Sbjct: 157 VIIGKPNVGKSSLLNSILREERAIVTQVAGTTRDVIEEVINIKGIPLILVDTAGIRDTTD 216 Query: 64 --KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 +N + K ++ + +A L+LF++D+ ++ D I L+ +N +I + NK Sbjct: 217 FVENIGVMK-----SKEFLQKADLVLFVLDASQELSKEDREIYISLQ-ENQKVIGILNKT 270 Query: 122 DTRIAQRNFYEIYSLD-FKEIVEISAEHDLGTSELHSVIFK-IFKQKYPNHPLEMIENNK 179 D ++ SL K +E+SA +G E+ I++ I ++K + ++I N Sbjct: 271 DL----EKKIQVSSLSKIKNWIEVSAMKCIGIEEMEEKIYQYILQEKVEENSQKLILTNI 326 Query: 180 RN 181 R+ Sbjct: 327 RH 328 >gi|114705491|ref|ZP_01438394.1| tRNA modification GTPase [Fulvimarina pelagi HTCC2506] gi|114538337|gb|EAU41458.1| tRNA modification GTPase [Fulvimarina pelagi HTCC2506] Length = 474 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 40/96 (41%), Positives = 60/96 (62%), Gaps = 1/96 (1%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 Y +AIVGAPN GKS+L N L +++ A+V + PG TRD + ++GV ++DTAGI + Sbjct: 217 YKVAIVGAPNAGKSSLLNALAEREAAIVTDVPGTTRDVISVTLDLSGVPVVLLDTAGIRE 276 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITP 98 K+ A + +T A+NEA+L+L L D + P Sbjct: 277 TKDKVEAIGVG-RTRAAMNEANLVLALEDPRDAPGP 311 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 24/76 (31%), Positives = 42/76 (55%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP 264 ++A+VG PN GKS+L+N L + G TRD +S++ + P+ + DTAG+R+ Sbjct: 218 KVAIVGAPNAGKSSLLNALAEREAAIVTDVPGTTRDVISVTLDLSGVPVVLLDTAGIRET 277 Query: 265 SRITESLEQKTVKKSM 280 E++ + +M Sbjct: 278 KDKVEAIGVGRTRAAM 293 >gi|320527161|ref|ZP_08028348.1| tRNA modification GTPase TrmE [Solobacterium moorei F0204] gi|320132489|gb|EFW25032.1| tRNA modification GTPase TrmE [Solobacterium moorei F0204] Length = 459 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 66/119 (55%), Gaps = 3/119 (2%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 I + + ++GRPNVGKS+L+N LL ++ + +G TRD V + + + DTA Sbjct: 232 IKEGINTVILGRPNVGKSSLLNALLEEDKAIVTDVAGTTRDLVEGTVRLSGITLNLIDTA 291 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVV 318 G+RK +++EQ + KS+Q++ + IV+LD + ++D +++ N VV Sbjct: 292 GIRKSD---DAIEQIGITKSLQALEKAQLVIVVLDGSEELTEEDQELLEKTKNYNRIVV 347 Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 40/120 (33%), Positives = 65/120 (54%), Gaps = 11/120 (9%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 I+G PNVGKS+L N L+++ A+V + G TRD + G ++G+ N++DTAGI + Sbjct: 240 ILGRPNVGKSSLLNALLEEDKAIVTDVAGTTRDLVEGTVRLSGITLNLIDTAGIRKSDDA 299 Query: 67 ----SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 I K + A+ +A L++ ++D +T D + + KN I+V NK D Sbjct: 300 IEQIGITKSLQ-----ALEKAQLVIVVLDGSEELTEEDQEL--LEKTKNYNRIVVYNKKD 352 >gi|300864576|ref|ZP_07109435.1| GTP-binding protein Era [Oscillatoria sp. PCC 6506] gi|300337400|emb|CBN54583.1| GTP-binding protein Era [Oscillatoria sp. PCC 6506] Length = 350 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 53/170 (31%), Positives = 84/170 (49%), Gaps = 12/170 (7%) Query: 207 AVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSR 266 ++GRPNVGKSTL+N+L+G +T + TR+ + + I DT G+ KP Sbjct: 61 GIIGRPNVGKSTLMNQLVGQKIAITSPVAQTTRNRLRGILTTEEAQIIFVDTPGIHKPHH 120 Query: 267 ITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 L + V + ++ + + + ++DA++P D IVD + NT V+L LNK D Sbjct: 121 ---QLGKVLVHNAQLAIHSVDVLLFVVDASVPAGGGDRYIVDLLVNTQTPVILGLNKSDQ 177 Query: 327 V-SDKLNLLQDLRTKAI--KNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 S+ L + T+ I K P I S TGEG++ L ++E Sbjct: 178 QPSESQAQLDNTYTQLIEAKQWP------IVKFSALTGEGVEALQQILIE 221 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 40/119 (33%), Positives = 59/119 (49%), Gaps = 1/119 (0%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 I+G PNVGKSTL N+LV +K+A+ TR+RL G VDT GI + Sbjct: 61 GIIGRPNVGKSTLMNQLVGQKIAITSPVAQTTRNRLRGILTTEEAQIIFVDTPGIHK-PH 119 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + K + +LAI+ ++LF++D+ D I L P+I+ NK D + Sbjct: 120 HQLGKVLVHNAQLAIHSVDVLLFVVDASVPAGGGDRYIVDLLVNTQTPVILGLNKSDQQ 178 >gi|288941441|ref|YP_003443681.1| GTP-binding protein Era [Allochromatium vinosum DSM 180] gi|288896813|gb|ADC62649.1| GTP-binding protein Era [Allochromatium vinosum DSM 180] Length = 307 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 49/180 (27%), Positives = 84/180 (46%), Gaps = 8/180 (4%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AI+G PNVGKSTL NR++ +K+A+ + TR + G G VDT GI + Sbjct: 19 TVAIIGRPNVGKSTLLNRILGQKLAITSHKAQTTRHAILGIKTRAGGQILFVDTPGIHER 78 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 ++ + +N A+ + L L ++++ T D + +P+I V NK+D Sbjct: 79 GGSALNRYLNRAARAAVADTDLALLVVEA-GRWTEEDAKALEAIAAAGVPVIAVVNKVD- 136 Query: 124 RIAQRNFYEIY------SLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 RIA ++ Y F+ +V +SA L +I + + P P + + + Sbjct: 137 RIADKSTLLPYLQALGERHAFRHVVLVSATKGDQVETLERLIVESLPEGEPVFPEDQLTD 196 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 39/141 (27%), Positives = 77/141 (54%), Gaps = 3/141 (2%) Query: 194 KSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPI 253 +SS +S+ +A++GRPNVGKSTL+NR+LG +T ++ TR ++ I Sbjct: 8 ESSTSVVSRCGTVAIIGRPNVGKSTLLNRILGQKLAITSHKAQTTRHAILGIKTRAGGQI 67 Query: 254 EIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNT 313 DT G+ + R +L + + + +V + +++++A + ++D + ++++ Sbjct: 68 LFVDTPGIHE--RGGSALNRYLNRAARAAVADTDLALLVVEAG-RWTEEDAKALEAIAAA 124 Query: 314 GHAVVLALNKWDMVSDKLNLL 334 G V+ +NK D ++DK LL Sbjct: 125 GVPVIAVVNKVDRIADKSTLL 145 >gi|222100702|ref|YP_002535270.1| GTP-binding protein era like protein [Thermotoga neapolitana DSM 4359] gi|221573092|gb|ACM23904.1| GTP-binding protein era like protein [Thermotoga neapolitana DSM 4359] Length = 301 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 45/169 (26%), Positives = 87/169 (51%), Gaps = 9/169 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+ G+PNVGKST IN +LG ++ + TR+ ++ + K+ I DT G+ KP Sbjct: 9 VALAGKPNVGKSTFINTVLGRKVVIVSDKPQTTRNRINCIYTDKDAQIVFVDTPGIHKP- 67 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + V+ ++Q+++ + + +LDA F K D ++ V + ++A+NK D Sbjct: 68 --LHRLGEYMVRAAVQALKGVDIVLFMLDAADGFTKTDEQVAKIVNESRTKTIIAVNKID 125 Query: 326 MVS-DKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 + +K + +L ++N + ++ IS G G+ +L+ + E Sbjct: 126 VAGEEKAKSVGELAKSMVENA-----VSVHYISALKGIGVFELLDRIKE 169 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 1/119 (0%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+ G PNVGKST N ++ +K+ +V + P TR+R+ VDT GI Sbjct: 9 VALAGKPNVGKSTFINTVLGRKVVIVSDKPQTTRNRINCIYTDKDAQIVFVDTPGIHKPL 68 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + + + M A+ ++LF++D+ G T D + + + II NK+D Sbjct: 69 H-RLGEYMVRAAVQALKGVDIVLFMLDAADGFTKTDEQVAKIVNESRTKTIIAVNKIDV 126 >gi|164685874|ref|ZP_01947569.2| tRNA modification GTPase TrmE [Coxiella burnetii 'MSU Goat Q177'] gi|165922497|ref|ZP_02219668.1| tRNA modification GTPase TrmE [Coxiella burnetii RSA 334] gi|164601391|gb|EAX31811.2| tRNA modification GTPase TrmE [Coxiella burnetii 'MSU Goat Q177'] gi|165916702|gb|EDR35306.1| tRNA modification GTPase TrmE [Coxiella burnetii RSA 334] Length = 452 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 40/121 (33%), Positives = 70/121 (57%), Gaps = 3/121 (2%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+ I G PNVGKS+L N L ++ A+V + G TRD + I+G+ ++VDTAG+ Sbjct: 218 TVVIAGEPNVGKSSLLNLLSGQETAIVTDIAGTTRDIIRESIHIDGLPIHVVDTAGLRLT 277 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKN--IPIIIVSNKM 121 ++ + K+ +T+ A+ +A L+L +ID+ + I + + + IP +I+ NK+ Sbjct: 278 EDV-VEKEGVRRTQKAVQQADLLLLMIDASKPTEDFKKIIAQWFSENDNKIPTLIIENKI 336 Query: 122 D 122 D Sbjct: 337 D 337 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 51/198 (25%), Positives = 93/198 (46%), Gaps = 30/198 (15%) Query: 114 IIIVSNKMDTRIAQRNFYEIYSLDFKEIVE--------ISAEHDLGTSELHSVIFKIFKQ 165 +I S++ R A R+ +S ++V+ I A D E+ + + K+ Sbjct: 132 LINASSEQAARSAMRSLQGEFSKRIHQLVDALIQLRMYIEASIDFPEEEIDFLADERIKE 191 Query: 166 KYPN--HPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRL 223 N H ++ IE + +E IT + + G PNVGKS+L+N L Sbjct: 192 TLENLTHQVQEIEKTAKQGALLREGIT---------------VVIAGEPNVGKSSLLNLL 236 Query: 224 LGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITES-LEQKTVKKSMQS 282 G + +G TRD + S + PI + DTAG+ R+TE +E++ V+++ ++ Sbjct: 237 SGQETAIVTDIAGTTRDIIRESIHIDGLPIHVVDTAGL----RLTEDVVEKEGVRRTQKA 292 Query: 283 VRTCETTIVLLDATIPFE 300 V+ + ++++DA+ P E Sbjct: 293 VQQADLLLLMIDASKPTE 310 >gi|306825398|ref|ZP_07458738.1| GTP-binding protein Era [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432336|gb|EFM35312.1| GTP-binding protein Era [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 299 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 48/178 (26%), Positives = 87/178 (48%), Gaps = 5/178 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKST N ++ +K+A++ + TR+++ G + +DT GI K Sbjct: 8 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 ++ M + + E +LF++ + D I L+ +P+I+V NK+D Sbjct: 68 -TALGDFMVESAYSTLREVDTVLFMVPADEPRGKGDDMIIERLKAAKVPVILVVNKIDKV 126 Query: 125 IAQRNFYEIYS----LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 + +I +DFKEIV ISA S L ++ + ++ + P + I ++ Sbjct: 127 HPDQLLAQIDDFRNQMDFKEIVPISALQGNNVSRLIDILSENLEEGFQYFPSDQITDH 184 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKST +N ++G + ++ TR+ + + I DT G+ KP Sbjct: 8 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +L V+ + ++R +T + ++ A P K D I++ + V+L +NK D Sbjct: 68 ---TALGDFMVESAYSTLREVDTVLFMVPADEPRGKGDDMIIERLKAAKVPVILVVNKID 124 Query: 326 MV 327 V Sbjct: 125 KV 126 >gi|298369774|ref|ZP_06981091.1| tRNA modification GTPase TrmE [Neisseria sp. oral taxon 014 str. F0314] gi|298282331|gb|EFI23819.1| tRNA modification GTPase TrmE [Neisseria sp. oral taxon 014 str. F0314] Length = 454 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 42/119 (35%), Positives = 70/119 (58%), Gaps = 4/119 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + +VGAPNVGKS+L N L +A+V + G TRD + Q ++GV +I+DTAG+ + Sbjct: 220 VVLVGAPNVGKSSLLNALAGDDIAIVTDIAGTTRDTVREQITLDGVPVHIIDTAGLRETD 279 Query: 65 NCSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + + +Q+ +++ A++EA + L LID + G+ AI + L + I + NK D Sbjct: 280 D--VVEQIGIERSRKAVSEADVALILIDPREGVNAKTQAILNSL-PAGLKKIEIHNKAD 335 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 47/174 (27%), Positives = 87/174 (50%), Gaps = 11/174 (6%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + + + +VG PNVGKS+L+N L G + + +G TRD+V P+ I DTA Sbjct: 214 LREGMNVVLVGAPNVGKSSLLNALAGDDIAIVTDIAGTTRDTVREQITLDGVPVHIIDTA 273 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R+ + +EQ +++S ++V + ++L+D + I++S G + Sbjct: 274 GLRETDDV---VEQIGIERSRKAVSEADVALILIDPREGVNAKTQAILNS-LPAGLKKIE 329 Query: 320 ALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 NK D+ + + + L Q G + ++S +TG GLD L ++L+ Sbjct: 330 IHNKADLTGEPVAVRS-------GGLAQTGADTVISLSAKTGAGLDLLKHALLQ 376 >gi|196232691|ref|ZP_03131542.1| tRNA modification GTPase TrmE [Chthoniobacter flavus Ellin428] gi|196223151|gb|EDY17670.1| tRNA modification GTPase TrmE [Chthoniobacter flavus Ellin428] Length = 445 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 38/115 (33%), Positives = 64/115 (55%), Gaps = 3/115 (2%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + +R + G PNVGKS+L+N LLG+ R + + G TRD + + N PI + D Sbjct: 217 KVLREGVRTVIYGAPNVGKSSLLNLLLGHERAIVSPRPGTTRDVIEETINLGGLPIRLID 276 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFN 312 TAG+R + LEQ+ +K++ Q + + + + DA+ P ++ V +V N Sbjct: 277 TAGVRVSD---DELEQEGMKRTWQELARADLALHVFDASEPPSEEANGTVLTVLN 328 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 34/54 (62%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 I GAPNVGKS+L N L+ + A+V PG TRD + + G+ ++DTAG+ Sbjct: 227 IYGAPNVGKSSLLNLLLGHERAIVSPRPGTTRDVIEETINLGGLPIRLIDTAGV 280 >gi|149925382|ref|ZP_01913646.1| tRNA modification GTPase TrmE [Limnobacter sp. MED105] gi|149825499|gb|EDM84707.1| tRNA modification GTPase TrmE [Limnobacter sp. MED105] Length = 459 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 51/172 (29%), Positives = 90/172 (52%), Gaps = 27/172 (15%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 L+I +VG PNVGKS+L+N L G + + +G TRD + N + P+ + DTAG+R+ Sbjct: 230 LQIVLVGEPNVGKSSLLNALAGEEIAIVSAIAGTTRDRIKQELNIRGIPLVLVDTAGLRE 289 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATI-PFEK--QDLRIVDSVFNTGHAVVLA 320 + +E+ ++++ +SV+ + ++L DAT P + Q L + + + Sbjct: 290 ---TVDEVERIGIERTRKSVQEADLLLILKDATQGPHDALHQHLELPVHL-----PTLTV 341 Query: 321 LNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVL 372 LNK D++ + LLQD+ LP +S + G+GL+ L ++L Sbjct: 342 LNKVDLLPEAPQLLQDV-------LP---------VSAKNGQGLEQLKDAIL 377 Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 51/167 (30%), Positives = 87/167 (52%), Gaps = 11/167 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 I +VG PNVGKS+L N L +++A+V G TRDR+ + I G+ +VDTAG+ + Sbjct: 232 IVLVGEPNVGKSSLLNALAGEEIAIVSAIAGTTRDRIKQELNIRGIPLVLVDTAGLRETV 291 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + + ++T ++ EA L+L L D+ G P+D ++P + V NK+D Sbjct: 292 D-EVERIGIERTRKSVQEADLLLILKDATQG--PHDALHQHLELPVHLPTLTVLNKVDL- 347 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF-KIFKQKYPNH 170 E L ++++ +SA++ G +L I K+ P+H Sbjct: 348 -----LPEAPQL-LQDVLPVSAKNGQGLEQLKDAILAKVGIAHTPDH 388 >gi|116874162|ref|YP_850943.1| tRNA modification GTPase TrmE [Listeria welshimeri serovar 6b str. SLCC5334] gi|123458786|sp|A0AMD2|MNME_LISW6 RecName: Full=tRNA modification GTPase mnmE gi|116743040|emb|CAK22164.1| tRNA modification GTPase TrmE [Listeria welshimeri serovar 6b str. SLCC5334] Length = 457 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 39/132 (29%), Positives = 73/132 (55%), Gaps = 5/132 (3%) Query: 195 SSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIE 254 S K + + L A++GRPNVGKS+L+N+L+ + + +G TRD + N + P+ Sbjct: 211 SQGKILREGLATAIIGRPNVGKSSLLNQLIQEEKAIVTDIAGTTRDIIEEYVNVRGVPLR 270 Query: 255 IFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTG 314 + DTAG+R+ I E + V++S +++ + +++L+ +D + ++ G Sbjct: 271 LIDTAGIRETEDIVEKI---GVERSRKALADADFILLVLNQNEELTVEDEALFEAA--AG 325 Query: 315 HAVVLALNKWDM 326 H V+ LNK D+ Sbjct: 326 HNYVVVLNKTDL 337 Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 44/158 (27%), Positives = 82/158 (51%), Gaps = 3/158 (1%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N+L++++ A+V + G TRD + + GV ++DTAGI + ++ Sbjct: 223 AIIGRPNVGKSSLLNQLIQEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAGIRETED 282 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 + K +++ A+ +A IL +++ +T D A+ N +++ ++T++ Sbjct: 283 I-VEKIGVERSRKALADADFILLVLNQNEELTVEDEALFEAAAGHNYVVVLNKTDLETKL 341 Query: 126 AQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 E+ + IV S +D G L I +F Sbjct: 342 DINKVRELAGEN--PIVSTSLVNDEGLEALEEAIKTLF 377 >gi|313893315|ref|ZP_07826890.1| ribosome biogenesis GTPase Era [Veillonella sp. oral taxon 158 str. F0412] gi|313442211|gb|EFR60628.1| ribosome biogenesis GTPase Era [Veillonella sp. oral taxon 158 str. F0412] Length = 299 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 49/171 (28%), Positives = 81/171 (47%), Gaps = 9/171 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTL N L+ K+A+V + TR+R+ +DT G+ K Sbjct: 12 VAVVGRPNVGKSTLINALIGDKIAIVSDKAQTTRNRIICVYTDEAKQIVFMDTPGVHKPK 71 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + + M D ++ E +LF++ P D+ I L++ +P+ +V NK+DT Sbjct: 72 H-KLGEFMVDAAIESLKETEAVLFVVAGNEKRGPGDNFIIEQLQRVKVPVFLVVNKIDTL 130 Query: 125 IAQRNFYEIYSLD----FKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHP 171 + I S F ++ ISA+ E I K+ ++ P P Sbjct: 131 KKEELLEAIVSYQNAYPFAGVIPISAKDKENLPE----ILKVLEETLPEGP 177 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 59/120 (49%), Gaps = 3/120 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +AVVGRPNVGKSTLIN L+G + ++ TR+ + + + I DT G+ KP Sbjct: 12 VAVVGRPNVGKSTLINALIGDKIAIVSDKAQTTRNRIICVYTDEAKQIVFMDTPGVHKPK 71 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + V +++S++ E + ++ D I++ + V L +NK D Sbjct: 72 H---KLGEFMVDAAIESLKETEAVLFVVAGNEKRGPGDNFIIEQLQRVKVPVFLVVNKID 128 >gi|326773544|ref|ZP_08232827.1| GTP-binding protein Era [Actinomyces viscosus C505] gi|326636774|gb|EGE37677.1| GTP-binding protein Era [Actinomyces viscosus C505] Length = 397 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 79/169 (46%), Gaps = 5/169 (2%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PN GKSTL N +V K+A+ P TR + G +VDT G+ + Sbjct: 103 IVGRPNAGKSTLTNAMVGAKIAITSGRPQTTRHNVRGVIHKENAQIVLVDTPGLHRPRTL 162 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 + K++ND + + +++F I + I P D IT L + P++ V K DT Sbjct: 163 -LGKRLNDLVRETLADVDVVVFCIPANEKIGPGDRFITRDLAELRTPVVAVVTKADTVTR 221 Query: 127 QRNFYEIYSL----DFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHP 171 + ++ ++ ++ +IV +SA+ + L V+ K P +P Sbjct: 222 EALAAQLLAVSELGEWADIVPVSAQRNEQIDVLEEVLLKYMPLSPPLYP 270 Score = 43.9 bits (102), Expect = 0.064, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 33/57 (57%) Query: 208 VVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP 264 +VGRPN GKSTL N ++G +T + TR +V + +N I + DT G+ +P Sbjct: 103 IVGRPNAGKSTLTNAMVGAKIAITSGRPQTTRHNVRGVIHKENAQIVLVDTPGLHRP 159 >gi|301154740|emb|CBW14203.1| membrane-associated, 16S rRNA-binding GTPase [Haemophilus parainfluenzae T3T1] Length = 304 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 50/177 (28%), Positives = 86/177 (48%), Gaps = 8/177 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNI-VDTAGIADG 63 IAIVG PNVGKSTL N+++ +K+++ TR R+ G G+ I VDT G+ Sbjct: 15 IAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIK-TEGIYQEIYVDTPGLHIE 73 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + +I + MN AI + LI+F++D D + + LR P+++ NK+D Sbjct: 74 EKRAINRLMNRAASSAIGDVDLIIFVVDG-THWNADDEMVLNKLRNAKAPVVLAINKVDN 132 Query: 124 RIAQRNFYEIYS-----LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 + + + DF IV ISA+ +L ++ + ++ + P + + Sbjct: 133 IKNKDDLLPFITDLGSKFDFAHIVPISAQRGNNVHQLEKIVRQSLRKGVHHFPEDYV 189 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 42/131 (32%), Positives = 70/131 (53%), Gaps = 7/131 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIF-DTAGMR-K 263 IA+VGRPNVGKSTL+N++LG +T ++ TR + + + EI+ DT G+ + Sbjct: 15 IAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRI-VGIKTEGIYQEIYVDTPGLHIE 73 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 R L + ++ V + I ++D T + D +++ + N VVLA+NK Sbjct: 74 EKRAINRLMNRAASSAIGDV---DLIIFVVDGT-HWNADDEMVLNKLRNAKAPVVLAINK 129 Query: 324 WDMVSDKLNLL 334 D + +K +LL Sbjct: 130 VDNIKNKDDLL 140 >gi|172037536|ref|YP_001804037.1| GTP-binding protein Era [Cyanothece sp. ATCC 51142] gi|254783295|sp|B1WT49|ERA_CYAA5 RecName: Full=GTPase Era gi|171698990|gb|ACB51971.1| GTP-binding protein [Cyanothece sp. ATCC 51142] Length = 314 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 50/176 (28%), Positives = 86/176 (48%), Gaps = 23/176 (13%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 + ++GRPNVGKSTL+N+L+G +T S TR+ + I DT G+ KP Sbjct: 25 VGIIGRPNVGKSTLMNQLIGQKIAITSPVSQTTRNRLQGILTTDKAQIIFVDTPGIHKPH 84 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +L + VK + ++ + + ++++D+++ D I+D + V+L LNK D Sbjct: 85 H---TLGKIIVKNAKTAINSVDIILLVVDSSVKSGGGDRYIIDLLKTVNQPVILGLNKSD 141 Query: 326 MVSDKL--------NLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 ++K NL+QD N P I S TG+G++ L +++E Sbjct: 142 QQTEKYQEIDESYANLIQD------HNWPMI------KFSALTGDGVETLQNTLIE 185 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 41/120 (34%), Positives = 62/120 (51%), Gaps = 1/120 (0%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + I+G PNVGKSTL N+L+ +K+A+ TR+RL G + VDT GI Sbjct: 25 VGIIGRPNVGKSTLMNQLIGQKIAITSPVSQTTRNRLQGILTTDKAQIIFVDTPGIHK-P 83 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + ++ K + + AIN +IL ++DS D I L+ N P+I+ NK D + Sbjct: 84 HHTLGKIIVKNAKTAINSVDIILLVVDSSVKSGGGDRYIIDLLKTVNQPVILGLNKSDQQ 143 >gi|167770827|ref|ZP_02442880.1| hypothetical protein ANACOL_02180 [Anaerotruncus colihominis DSM 17241] gi|167666867|gb|EDS10997.1| hypothetical protein ANACOL_02180 [Anaerotruncus colihominis DSM 17241] Length = 456 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 81/164 (49%), Gaps = 9/164 (5%) Query: 167 YPNHPLEMIENNKRNEESPK--ENITSEGKS--SVKNISKPLRIAVVGRPNVGKSTLINR 222 YP +E ++ N + K + + S S + + + + + +VGRPNVGKS+L+N Sbjct: 181 YPEEEIEAVDPNALQCDLAKCLQRLDSLAGSYETGRLVREGIETVIVGRPNVGKSSLMNL 240 Query: 223 LLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQS 282 + G R + G TRD VS + + DTAG+RKP + +EQ+ V +++ Sbjct: 241 MTGVKRSIVSDIPGTTRDLVSDTVLCGGFVFHLTDTAGIRKPD---DPIEQEGVGLALEQ 297 Query: 283 VRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 + + + + D + P D R++++ G + +NK D+ Sbjct: 298 IERAQLVLAVFDGSEPLTGDDRRVMEAC--RGLNALALVNKADL 339 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 50/151 (33%), Positives = 75/151 (49%), Gaps = 22/151 (14%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PNVGKS+L N + K ++V + PG TRD + + G +F++ DTAGI Sbjct: 226 IVGRPNVGKSSLMNLMTGVKRSIVSDIPGTTRDLVSDTVLCGGFVFHLTDTAGI------ 279 Query: 67 SIAKQMNDQTE-----LA---INEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVS 118 ++ +D E LA I A L+L + D +T D + R N ++ Sbjct: 280 ---RKPDDPIEQEGVGLALEQIERAQLVLAVFDGSEPLTGDDRRVMEACRGLNALALV-- 334 Query: 119 NKMDTRIAQRNFYEIYSLDFKEIVEISAEHD 149 NK D + Q + ++ DFK ++ ISA HD Sbjct: 335 NKAD--LTQVLDAQAFASDFKRVLLISA-HD 362 >gi|257437744|ref|ZP_05613499.1| tRNA modification GTPase TrmE [Faecalibacterium prausnitzii A2-165] gi|257199759|gb|EEU98043.1| tRNA modification GTPase TrmE [Faecalibacterium prausnitzii A2-165] Length = 456 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 65/120 (54%), Gaps = 5/120 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 A+VGRPN GKSTL+N L G++R + +G TRD V + + + +FDTAG+R+ Sbjct: 224 CAIVGRPNAGKSTLLNLLAGFDRAIVTPVAGTTRDVVEQAVRLGDIRLNLFDTAGLRETE 283 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +++E + +++S + + + + D + P ++DL + G + +NK D Sbjct: 284 ---DAIEAEGIRRSWKKLDEAGLILAVFDGSEPLIREDLALAQRC--AGRPAIALVNKVD 338 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 44/145 (30%), Positives = 72/145 (49%), Gaps = 5/145 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 AIVG PN GKSTL N L A+V G TRD + + + N+ DTAG+ + + Sbjct: 224 CAIVGRPNAGKSTLLNLLAGFDRAIVTPVAGTTRDVVEQAVRLGDIRLNLFDTAGLRETE 283 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + +I + ++ ++EA LIL + D + D A+ R P I + NK+D + Sbjct: 284 D-AIEAEGIRRSWKKLDEAGLILAVFDGSEPLIREDLALAQ--RCAGRPAIALVNKVD-K 339 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHD 149 Q + EI + DF ++ + + + Sbjct: 340 PTQFD-AEIIAGDFAMVLPVCCQEE 363 >gi|295402127|ref|ZP_06812086.1| tRNA modification GTPase TrmE [Geobacillus thermoglucosidasius C56-YS93] gi|294975810|gb|EFG51429.1| tRNA modification GTPase TrmE [Geobacillus thermoglucosidasius C56-YS93] Length = 461 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 39/129 (30%), Positives = 71/129 (55%), Gaps = 5/129 (3%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L ++GRPNVGKS+L+N L+ N+ + G TRD + N + P+ + D Sbjct: 218 KILREGLATVIIGRPNVGKSSLLNALVHENKAIVTDIPGTTRDVIEEYVNVRGVPLRLID 277 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ I E + V++S Q ++ + +++L+ P +D ++ D V G Sbjct: 278 TAGIRETEDIVERI---GVERSRQMLKEADLILLVLNYHEPLTAEDEKLFDMV--KGMDF 332 Query: 318 VLALNKWDM 326 ++ +NK D+ Sbjct: 333 IVIVNKTDL 341 Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 47/159 (29%), Positives = 81/159 (50%), Gaps = 7/159 (4%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 I+G PNVGKS+L N LV + A+V + PG TRD + + GV ++DTAGI + ++ Sbjct: 228 IIGRPNVGKSSLLNALVHENKAIVTDIPGTTRDVIEEYVNVRGVPLRLIDTAGIRETEDI 287 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD--TR 124 + + +++ + EA LIL +++ +T D + F K + I++ NK D Sbjct: 288 -VERIGVERSRQMLKEADLILLVLNYHEPLTAEDEKL--FDMVKGMDFIVIVNKTDLPQH 344 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 I ++ + I+ S H+ G +L + I +F Sbjct: 345 IDMDRVKQLAG--GRPIITTSLLHEKGIEDLETAISNMF 381 >gi|294675621|ref|YP_003576236.1| tRNA modification GTPase TrmE [Rhodobacter capsulatus SB 1003] gi|294474441|gb|ADE83829.1| tRNA modification GTPase TrmE [Rhodobacter capsulatus SB 1003] Length = 427 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 51/187 (27%), Positives = 84/187 (44%), Gaps = 46/187 (24%) Query: 193 GKSSV-KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNH 251 G+ SV + + + +A+VGRPN GKSTL+N L G +T +G TRD + + + Sbjct: 201 GRISVTERVREGFEVAIVGRPNAGKSTLLNALAGREAAITSEVAGTTRDVIEVRMDLSGL 260 Query: 252 PIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLL-DATIPFEKQDLRIVDSV 310 + + DTAG+R + +E V ++++ + + + LL D IP Sbjct: 261 AVTLLDTAGLRDTE---DQVEAIGVARAIERAKRADLRVFLLDDGDIP------------ 305 Query: 311 FNTGHAVVLALNKWDMVSDKLNLLQ----DLRTKAIKNLPQIGDIYINTISGRTGEGLDD 366 LLQ DL + +L GD+ +SG+TGEG+D Sbjct: 306 ----------------------LLQPIGDDLVVQGKADLGGSGDLR---VSGKTGEGVDA 340 Query: 367 LMVSVLE 373 L+ ++ E Sbjct: 341 LVAAITE 347 Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 1/89 (1%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + +AIVG PN GKSTL N L ++ A+ G TRD + + ++G+ ++DTAG+ D Sbjct: 213 FEVAIVGRPNAGKSTLLNALAGREAAITSEVAGTTRDVIEVRMDLSGLAVTLLDTAGLRD 272 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLID 91 ++ A + E A A L +FL+D Sbjct: 273 TEDQVEAIGVARAIERA-KRADLRVFLLD 300 >gi|218441386|ref|YP_002379715.1| GTP-binding protein Era [Cyanothece sp. PCC 7424] gi|218174114|gb|ACK72847.1| GTP-binding protein Era [Cyanothece sp. PCC 7424] Length = 318 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 80/168 (47%), Gaps = 7/168 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKSTL+N+L+G +T + TR+ + I DT G+ KP Sbjct: 28 VAIIGRPNVGKSTLMNQLVGQKIAITSPVAQTTRNRLQGILTTSEAQIIFVDTPGIHKPH 87 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + VK + ++ + +++ D++I D I+D + T V+L LNK D Sbjct: 88 H---ELGKVLVKNAQMAINAVDLVLLVADSSIEAGGGDRYIIDLLEETKTPVILGLNKSD 144 Query: 326 MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 + L + + + L Q + S TG GLD L ++E Sbjct: 145 QQPANFDPLDE----SYRQLAQFHQWPMVKFSALTGSGLDLLQSLLVE 188 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 43/122 (35%), Positives = 62/122 (50%), Gaps = 1/122 (0%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKSTL N+LV +K+A+ TR+RL G + VDT GI Sbjct: 28 VAIIGRPNVGKSTLMNQLVGQKIAITSPVAQTTRNRLQGILTTSEAQIIFVDTPGIHK-P 86 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + K + ++AIN L+L + DS D I L + P+I+ NK D + Sbjct: 87 HHELGKVLVKNAQMAINAVDLVLLVADSSIEAGGGDRYIIDLLEETKTPVILGLNKSDQQ 146 Query: 125 IA 126 A Sbjct: 147 PA 148 >gi|163791744|ref|ZP_02186131.1| tRNA modification GTPase [Carnobacterium sp. AT7] gi|159872986|gb|EDP67103.1| tRNA modification GTPase [Carnobacterium sp. AT7] Length = 462 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 41/141 (29%), Positives = 80/141 (56%), Gaps = 6/141 (4%) Query: 195 SSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIE 254 S K + + L A++GRPNVGKS+L+N LL + + +G TRD + + + P++ Sbjct: 216 SQGKILREGLATAIIGRPNVGKSSLLNYLLDEEKAIVTDIAGTTRDVIEEYISVRGVPLK 275 Query: 255 IFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTG 314 + DTAG+R+ I E + V++S Q++ + +++ + + P +D ++++ Sbjct: 276 LIDTAGIRETEDIIERI---GVERSRQALSDADLVLLVFNQSEPLTIEDKALIEA--TNQ 330 Query: 315 HAVVLALNKWDMVSDKLNLLQ 335 H ++ LNK D+ +KL+L + Sbjct: 331 HRRIVILNKMDL-PNKLDLAE 350 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/117 (32%), Positives = 67/117 (57%), Gaps = 3/117 (2%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+ ++ A+V + G TRD + + GV ++DTAGI + ++ Sbjct: 228 AIIGRPNVGKSSLLNYLLDEEKAIVTDIAGTTRDVIEEYISVRGVPLKLIDTAGIRETED 287 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 I + +++ A+++A L+L + + +T D A+ + I++ NKMD Sbjct: 288 I-IERIGVERSRQALSDADLVLLVFNQSEPLTIEDKALIEATNQHR--RIVILNKMD 341 >gi|91789484|ref|YP_550436.1| GTP-binding protein Era [Polaromonas sp. JS666] gi|91698709|gb|ABE45538.1| GTP-binding protein Era [Polaromonas sp. JS666] Length = 314 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 54/174 (31%), Positives = 84/174 (48%), Gaps = 15/174 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N LV +K+++ TR R+ G + F VDT G Sbjct: 29 IAIVGKPNVGKSTLLNALVGQKISITSRKAQTTRHRITGVRTVGATQFVFVDTPGFQTRH 88 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 ++ + +N A+N+ LI+F++++ D + + L K P I+++NK D Sbjct: 89 GNALNRSLNRTVVGAVNDVDLIVFVVEA-GQFNLADAKVLALLPAKT-PAILLANKFDLI 146 Query: 124 -RIAQ-----RNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHP 171 R A+ R+ E + +F E V +SA + L F I ++ P P Sbjct: 147 YRRAELAPWLRSMQERH--NFAEFVPMSANNAKDIERL----FGICEKYLPVQP 194 Score = 43.1 bits (100), Expect = 0.095, Method: Compositional matrix adjust. Identities = 36/134 (26%), Positives = 68/134 (50%), Gaps = 4/134 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA+VG+PNVGKSTL+N L+G +T ++ TR ++ DT G + + Sbjct: 29 IAIVGKPNVGKSTLLNALVGQKISITSRKAQTTRHRITGVRTVGATQFVFVDTPGFQ--T 86 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 R +L + + + +V + + +++A F D +++ + A++LA NK+D Sbjct: 87 RHGNALNRSLNRTVVGAVNDVDLIVFVVEAG-QFNLADAKVLALLPAKTPAILLA-NKFD 144 Query: 326 MVSDKLNLLQDLRT 339 ++ + L LR+ Sbjct: 145 LIYRRAELAPWLRS 158 >gi|313675601|ref|YP_004053597.1| tRNA modification GTPase trme [Marivirga tractuosa DSM 4126] gi|312942299|gb|ADR21489.1| tRNA modification GTPase trmE [Marivirga tractuosa DSM 4126] Length = 457 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 43/125 (34%), Positives = 69/125 (55%), Gaps = 3/125 (2%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 I G PN GKSTL N L+ ++ A+V + G TRD + + + GV+F +DTAG+ D ++ Sbjct: 226 IAGKPNTGKSTLLNALLNEEKAIVSDIAGTTRDFIEDEINLEGVVFRFIDTAGLRDTEDK 285 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 A + +T+ + +A LI+++ D K + + L IP I V NK+D A Sbjct: 286 VEAIGVQ-RTKDKMKQASLIVYMFDLKNDTLTEVNRDINMLENLGIPFIKVGNKLDE--A 342 Query: 127 QRNFY 131 Q++ Y Sbjct: 343 QQDLY 347 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 37/74 (50%) Query: 208 VVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRI 267 + G+PN GKSTL+N LL + + +G TRD + N + DTAG+R Sbjct: 226 IAGKPNTGKSTLLNALLNEEKAIVSDIAGTTRDFIEDEINLEGVVFRFIDTAGLRDTEDK 285 Query: 268 TESLEQKTVKKSMQ 281 E++ + K M+ Sbjct: 286 VEAIGVQRTKDKMK 299 >gi|321313663|ref|YP_004205950.1| tRNA modification GTPase TrmE [Bacillus subtilis BSn5] gi|291486741|dbj|BAI87816.1| tRNA modification GTPase TrmE [Bacillus subtilis subsp. natto BEST195] gi|320019937|gb|ADV94923.1| tRNA modification GTPase TrmE [Bacillus subtilis BSn5] Length = 459 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 38/129 (29%), Positives = 74/129 (57%), Gaps = 5/129 (3%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L ++GRPNVGKS+L+N L+ + + G TRD + N + P+ + D Sbjct: 216 KILREGLSTVIIGRPNVGKSSLLNSLVHEAKAIVTDIPGTTRDVIEEYVNVRGVPLRLVD 275 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ I E + V++S Q ++ + +++L+ + ++D+++ ++V G V Sbjct: 276 TAGIRETEDIVERI---GVERSRQVLKEADLILLVLNYSEELSEEDVKLFEAV--EGMDV 330 Query: 318 VLALNKWDM 326 ++ LNK D+ Sbjct: 331 IVILNKTDL 339 Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 38/116 (32%), Positives = 66/116 (56%), Gaps = 3/116 (2%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 I+G PNVGKS+L N LV + A+V + PG TRD + + GV +VDTAGI + ++ Sbjct: 226 IIGRPNVGKSSLLNSLVHEAKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDI 285 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + + +++ + EA LIL +++ ++ D + F + + +I++ NK D Sbjct: 286 -VERIGVERSRQVLKEADLILLVLNYSEELSEED--VKLFEAVEGMDVIVILNKTD 338 >gi|240949697|ref|ZP_04754032.1| GTP-binding protein Era [Actinobacillus minor NM305] gi|257464705|ref|ZP_05629076.1| GTP-binding protein Era [Actinobacillus minor 202] gi|240295955|gb|EER46631.1| GTP-binding protein Era [Actinobacillus minor NM305] gi|257450365|gb|EEV24408.1| GTP-binding protein Era [Actinobacillus minor 202] Length = 300 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 51/183 (27%), Positives = 84/183 (45%), Gaps = 20/183 (10%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N+++ +K+++ TR R+ G VDT G+ + Sbjct: 11 IAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHIEE 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD-- 122 +I + MN AI + LI+F+++ T D + + LR P+++ NK+D Sbjct: 71 KRAINRLMNRAASSAIGDVDLIIFVVEG-TKWTEDDEMVLNKLRAAKAPVVLAINKVDNI 129 Query: 123 ----------TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPL 172 T ++Q+ DF EI+ ISA+ L + ++ + P Sbjct: 130 KEKDELLPHITELSQK-------FDFAEILPISAQRGKNVHILQKFVRDSLREGVHHFPE 182 Query: 173 EMI 175 E + Sbjct: 183 EYV 185 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 41/131 (31%), Positives = 67/131 (51%), Gaps = 7/131 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS-VSISWNWKNHPIEIFDTAGMR-K 263 IA+VGRPNVGKSTL+N++LG +T ++ TR V I I + DT G+ + Sbjct: 11 IAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIHTEGAYQAIYV-DTPGLHIE 69 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 R L + ++ V + I +++ T + + D +++ + VVLA+NK Sbjct: 70 EKRAINRLMNRAASSAIGDV---DLIIFVVEGT-KWTEDDEMVLNKLRAAKAPVVLAINK 125 Query: 324 WDMVSDKLNLL 334 D + +K LL Sbjct: 126 VDNIKEKDELL 136 >gi|159027574|emb|CAO86947.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 318 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 45/120 (37%), Positives = 60/120 (50%), Gaps = 1/120 (0%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 I I+G PNVGKSTL N+LV +K+A+ TR+RL G VDT GI Sbjct: 29 IGIIGRPNVGKSTLMNQLVGQKIAITSPIAQTTRNRLRGIVTDERSQMIFVDTPGIHK-P 87 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + K + E AIN L+LF++DS + D I L K P I+ NK D + Sbjct: 88 HHELGKVLVKNAENAINSVDLVLFVVDSSNFLGGGDRYIADLLTKNQTPTILGLNKADQQ 147 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/140 (27%), Positives = 67/140 (47%), Gaps = 4/140 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 I ++GRPNVGKSTL+N+L+G +T + TR+ + + + DT G+ KP Sbjct: 29 IGIIGRPNVGKSTLMNQLVGQKIAITSPIAQTTRNRLRGIVTDERSQMIFVDTPGIHKPH 88 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + VK + ++ + + + ++D++ D I D + +L LNK D Sbjct: 89 H---ELGKVLVKNAENAINSVDLVLFVVDSSNFLGGGDRYIADLLTKNQTPTILGLNKAD 145 Query: 326 MVSDKLNLLQD-LRTKAIKN 344 + + D RT A +N Sbjct: 146 QQPEDPEPIDDSYRTLAAEN 165 >gi|331266548|ref|YP_004326178.1| GTPase/GTP-binding protein Era [Streptococcus oralis Uo5] gi|326683220|emb|CBZ00838.1| GTPase/GTP-binding protein Era [Streptococcus oralis Uo5] Length = 299 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 48/178 (26%), Positives = 87/178 (48%), Gaps = 5/178 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKST N ++ +K+A++ + TR+++ G + +DT GI K Sbjct: 8 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 ++ M + + E +LF++ + D I L+ +P+I+V NK+D Sbjct: 68 -TALGDFMVESAYSTLREVDTVLFMVPADEPRGKGDDMIIERLKAAKVPVILVVNKIDKV 126 Query: 125 IAQRNFYEIYS----LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 + +I +DFKEIV ISA S L ++ + ++ + P + I ++ Sbjct: 127 HPDQLLSQIDDFRNQMDFKEIVPISALQGNNVSRLIDILSENLEEGFQYFPSDQITDH 184 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKST +N ++G + ++ TR+ + + I DT G+ KP Sbjct: 8 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +L V+ + ++R +T + ++ A P K D I++ + V+L +NK D Sbjct: 68 ---TALGDFMVESAYSTLREVDTVLFMVPADEPRGKGDDMIIERLKAAKVPVILVVNKID 124 Query: 326 MV 327 V Sbjct: 125 KV 126 >gi|299822890|ref|ZP_07054776.1| GTP-binding protein Era [Listeria grayi DSM 20601] gi|299816419|gb|EFI83657.1| GTP-binding protein Era [Listeria grayi DSM 20601] Length = 301 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 48/150 (32%), Positives = 80/150 (53%), Gaps = 13/150 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N ++ +K+A++ + TR+++ G + +DT GI K Sbjct: 10 VAIVGRPNVGKSTLLNHIIGQKIAIMSDKAQTTRNKVQGVYTTDESQIIFIDTPGIHKPK 69 Query: 65 NCSIAKQMNDQTELAIN---EAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 + K + ++A N E LI F+ID+ G+ D I L+ + P+ ++ NK+ Sbjct: 70 H----KLGDFMVKIAFNTFQEVDLIYFVIDASTGLGRGDEFIIEKLKNVDTPVFLLINKI 125 Query: 122 DTRIAQRNFYEIYS-----LDFKEIVEISA 146 D I+ E+ + ++F EI+ ISA Sbjct: 126 DL-ISPDALLELIASYREKMEFTEIIPISA 154 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 41/137 (29%), Positives = 67/137 (48%), Gaps = 5/137 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VGRPNVGKSTL+N ++G + ++ TR+ V + I DT G+ KP Sbjct: 10 VAIVGRPNVGKSTLLNHIIGQKIAIMSDKAQTTRNKVQGVYTTDESQIIFIDTPGIHKPK 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L VK + + + + ++DA+ + D I++ + N V L +NK D Sbjct: 70 H---KLGDFMVKIAFNTFQEVDLIYFVIDASTGLGRGDEFIIEKLKNVDTPVFLLINKID 126 Query: 326 MVSDK--LNLLQDLRTK 340 ++S L L+ R K Sbjct: 127 LISPDALLELIASYREK 143 >gi|323704187|ref|ZP_08115766.1| GTP-binding protein Era [Thermoanaerobacterium xylanolyticum LX-11] gi|323536253|gb|EGB26025.1| GTP-binding protein Era [Thermoanaerobacterium xylanolyticum LX-11] Length = 299 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 52/165 (31%), Positives = 92/165 (55%), Gaps = 18/165 (10%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIING----VIFNIVDTAGIA 61 A++G NVGKSTL N L+ +K+A+ + P TR+ + Q I+ G VIF +DT GI Sbjct: 9 ALIGRTNVGKSTLLNALLNEKVAITSDKPQTTRNTI--QGILTGEDYQVIF--IDTPGIH 64 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 K+ +++ M + + + E LI+++++ + P D I L P+I+V NK+ Sbjct: 65 KPKH-KLSEFMIESVKKTLAEVDLIIYMVEPDVEVGPGDKYIIDHLINIETPVILVINKI 123 Query: 122 DT------RIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL-HSVI 159 DT ++ + F ++Y +FK+I+ ISA ++ L H+++ Sbjct: 124 DTVSHETVDMSIQIFKQLY--NFKDILPISALKNMNIDLLKHTIV 166 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 71/145 (48%), Gaps = 6/145 (4%) Query: 207 AVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSR 266 A++GR NVGKSTL+N LL +T + TR+++ +++ + DT G+ KP Sbjct: 9 ALIGRTNVGKSTLLNALLNEKVAITSDKPQTTRNTIQGILTGEDYQVIFIDTPGIHKPKH 68 Query: 267 ITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 ++VKK++ V + I +++ + D I+D + N V+L +NK D Sbjct: 69 KLSEFMIESVKKTLAEV---DLIIYMVEPDVEVGPGDKYIIDHLINIETPVILVINKIDT 125 Query: 327 VSDKLNLLQDLRTKAIKNLPQIGDI 351 VS + D+ + K L DI Sbjct: 126 VSHE---TVDMSIQIFKQLYNFKDI 147 >gi|295108622|emb|CBL22575.1| tRNA modification GTPase trmE [Ruminococcus obeum A2-162] Length = 457 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 43/162 (26%), Positives = 86/162 (53%), Gaps = 14/162 (8%) Query: 167 YPNHPLEMIENNKRNEESPKENITSEGKSS--VKNISKPLRIAVVGRPNVGKSTLINRLL 224 YP LE++E ENI++ K++ + I + ++ ++G+PN GKS+L+N L+ Sbjct: 189 YPQELLEIVEKES-------ENISNLLKTADDGRMIQEGIKTVILGKPNAGKSSLLNFLV 241 Query: 225 GYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVR 284 G +R + +G TRD + + + + DTAG+R+ I E + V K+ Q Sbjct: 242 GEDRAIVTEIAGTTRDILEEYISLNGITLRMIDTAGIRETEDIVEKI---GVGKAKQMAE 298 Query: 285 TCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 + + ++D+++P ++ D I++ + +G ++ NK D+ Sbjct: 299 DADLILYVVDSSLPLDENDREIMELL--SGRKSIVIYNKTDL 338 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 78/163 (47%), Gaps = 16/163 (9%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN- 65 I+G PN GKS+L N LV + A+V G TRD L +NG+ ++DTAGI + ++ Sbjct: 225 ILGKPNAGKSSLLNFLVGEDRAIVTEIAGTTRDILEEYISLNGITLRMIDTAGIRETEDI 284 Query: 66 -----CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 AKQM + +A LIL+++DS + D I L + I++ NK Sbjct: 285 VEKIGVGKAKQMAE-------DADLILYVVDSSLPLDENDREIMELLSGRK--SIVIYNK 335 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 D A + E+ ++ +S + G +L I ++F Sbjct: 336 TDLE-AAVSIEELKEKTGSPVIPVSVVEETGLRQLEDEIRRMF 377 >gi|312864794|ref|ZP_07725025.1| ribosome biogenesis GTPase Era [Streptococcus downei F0415] gi|311099921|gb|EFQ58134.1| ribosome biogenesis GTPase Era [Streptococcus downei F0415] Length = 321 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 49/178 (27%), Positives = 86/178 (48%), Gaps = 5/178 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKST N ++ +K+A++ + TR+++ G + +DT GI K Sbjct: 30 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDQEQIVFIDTPGIHKPK 89 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 ++ M + + E +LF++ + D+ I L+ IP+I+V NK+D Sbjct: 90 -TALGDFMVESAYSTLREVETVLFMVPADEERGKGDNMIMERLKAAKIPVILVINKIDQV 148 Query: 125 IAQRNFYEI----YSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 + +I +DFKEIV ISA L ++ ++ Y P + I ++ Sbjct: 149 HPDQLLEKIDDFRSQMDFKEIVPISALQGNNIETLMMILKDNLEEGYQYFPEDQITDH 206 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 38/137 (27%), Positives = 67/137 (48%), Gaps = 5/137 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKST +N ++G + ++ TR+ + + I DT G+ KP Sbjct: 30 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDQEQIVFIDTPGIHKPK 89 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +L V+ + ++R ET + ++ A K D I++ + V+L +NK D Sbjct: 90 T---ALGDFMVESAYSTLREVETVLFMVPADEERGKGDNMIMERLKAAKIPVILVINKID 146 Query: 326 MV--SDKLNLLQDLRTK 340 V L + D R++ Sbjct: 147 QVHPDQLLEKIDDFRSQ 163 >gi|255521612|ref|ZP_05388849.1| tRNA modification GTPase TrmE [Listeria monocytogenes FSL J1-175] Length = 301 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 39/132 (29%), Positives = 73/132 (55%), Gaps = 5/132 (3%) Query: 195 SSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIE 254 S K + + L A++GRPNVGKS+L+N+L+ + + +G TRD + N + P+ Sbjct: 55 SQGKILREGLATAIIGRPNVGKSSLLNQLIQEEKAIVTDIAGTTRDIIEEYVNVRGVPLR 114 Query: 255 IFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTG 314 + DTAG+R+ I E + V++S +++ + +++L+ +D + ++ G Sbjct: 115 LIDTAGIRETEDIVEKI---GVERSRKALADADFILLVLNQNEELTVEDEALFEAA--AG 169 Query: 315 HAVVLALNKWDM 326 H V+ LNK D+ Sbjct: 170 HNYVVVLNKTDL 181 Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 44/158 (27%), Positives = 81/158 (51%), Gaps = 3/158 (1%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N+L++++ A+V + G TRD + + GV ++DTAGI + ++ Sbjct: 67 AIIGRPNVGKSSLLNQLIQEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAGIRETED 126 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 + K +++ A+ +A IL +++ +T D A+ N +++ ++T++ Sbjct: 127 I-VEKIGVERSRKALADADFILLVLNQNEELTVEDEALFEAAAGHNYVVVLNKTDLETKL 185 Query: 126 AQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 E+ IV S +D G L I +F Sbjct: 186 DINRVRELAG--ENPIVSTSLVNDEGLEALEEAIKTLF 221 >gi|240047711|ref|YP_002961099.1| tRNA modification GTPase TrmE [Mycoplasma conjunctivae HRC/581] gi|239985283|emb|CAT05296.1| tRNA modification GTPase mnmE [Mycoplasma conjunctivae] Length = 440 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 39/131 (29%), Positives = 71/131 (54%), Gaps = 5/131 (3%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 I + +++ +VG PN GKS+L+N LL N+ + +G TRD V ++ N ++ DTA Sbjct: 213 IFEGIKVTIVGVPNSGKSSLLNALLKENKAIVSEIAGTTRDVVEGNFQIDNILFKVSDTA 272 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+RK + +EQ ++K+ + + + I ++D+ F+K D I ++ T + Sbjct: 273 GIRKAK---DQIEQIGIQKAFEQISKNDLIIHVIDSQKGFDKTDQEIASTI--TNQVYIQ 327 Query: 320 ALNKWDMVSDK 330 NK D++ K Sbjct: 328 VYNKADLIEAK 338 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 60/171 (35%), Positives = 90/171 (52%), Gaps = 22/171 (12%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + IVG PN GKS+L N L+K+ A+V G TRD + G I+ ++F + DTAGI K Sbjct: 219 VTIVGVPNSGKSSLLNALLKENKAIVSEIAGTTRDVVEGNFQIDNILFKVSDTAGIRKAK 278 Query: 65 NCSIAKQMNDQTELA-INEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + +Q+ Q I++ LI+ +IDS+ G D I S + N I V NK D Sbjct: 279 DQ--IEQIGIQKAFEQISKNDLIIHVIDSQKGFDKTDQEIASTIT--NQVYIQVYNKADL 334 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEM 174 I + +IY ISA++D E+ ++I +I K+KY H L++ Sbjct: 335 -IEAKQKNQIY---------ISAKND----EIETLISEI-KKKY--HFLQI 368 >gi|159481624|ref|XP_001698878.1| hypothetical protein CHLREDRAFT_121098 [Chlamydomonas reinhardtii] gi|158273370|gb|EDO99160.1| predicted protein [Chlamydomonas reinhardtii] Length = 465 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 50/159 (31%), Positives = 75/159 (47%), Gaps = 3/159 (1%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKS+L N A+V G TRD L Q + GV ++DTAGI D Sbjct: 227 VAIVGRPNVGKSSLLNAWTNSDRAIVTEIAGTTRDVLEAQLSVGGVPVTLLDTAGIRDST 286 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + + ++++ A A +++ ++DS G T D I L P ++V+NK D R Sbjct: 287 DV-VERIGVERSQAAAAAADVVIMVVDSAEGWTDADTEIYRSLWGDG-PALLVANKDDLR 344 Query: 125 IAQRNFYEIYSLD-FKEIVEISAEHDLGTSELHSVIFKI 162 A + F V SA G L + + + Sbjct: 345 AAGAAIQLVERQSTFSATVRTSASQRKGLESLDAALLDL 383 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 39/127 (30%), Positives = 72/127 (56%), Gaps = 4/127 (3%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + L++A+VGRPNVGKS+L+N +R + +G TRD + + P+ + DTA Sbjct: 221 LRRGLQVAIVGRPNVGKSSLLNAWTNSDRAIVTEIAGTTRDVLEAQLSVGGVPVTLLDTA 280 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R T+ +E+ V++S + + I+++D+ + D I S++ G A+++ Sbjct: 281 GIRDS---TDVVERIGVERSQAAAAAADVVIMVVDSAEGWTDADTEIYRSLWGDGPALLV 337 Query: 320 ALNKWDM 326 A NK D+ Sbjct: 338 A-NKDDL 343 >gi|146319051|ref|YP_001198763.1| GTP-binding protein Era [Streptococcus suis 05ZYH33] gi|146321257|ref|YP_001200968.1| GTP-binding protein Era [Streptococcus suis 98HAH33] gi|223932650|ref|ZP_03624649.1| GTP-binding protein Era [Streptococcus suis 89/1591] gi|253752114|ref|YP_003025255.1| GTP-binding protein Era homolog [Streptococcus suis SC84] gi|253753939|ref|YP_003027080.1| GTP-binding protein Era homolog [Streptococcus suis P1/7] gi|253755186|ref|YP_003028326.1| GTP-binding protein Era homolog [Streptococcus suis BM407] gi|330832408|ref|YP_004401233.1| GTP-binding protein Era [Streptococcus suis ST3] gi|189037678|sp|A4W2H9|ERA_STRS2 RecName: Full=GTPase Era gi|189037680|sp|A4VW74|ERA_STRSY RecName: Full=GTPase Era gi|145689857|gb|ABP90363.1| GTPase [Streptococcus suis 05ZYH33] gi|145692063|gb|ABP92568.1| GTPase [Streptococcus suis 98HAH33] gi|223898620|gb|EEF64982.1| GTP-binding protein Era [Streptococcus suis 89/1591] gi|251816403|emb|CAZ52034.1| GTP-binding protein Era homolog [Streptococcus suis SC84] gi|251817650|emb|CAZ55398.1| GTP-binding protein Era homolog [Streptococcus suis BM407] gi|251820185|emb|CAR46552.1| GTP-binding protein Era homolog [Streptococcus suis P1/7] gi|292558696|gb|ADE31697.1| Small GTP-binding protein Era [Streptococcus suis GZ1] gi|319758490|gb|ADV70432.1| GTP-binding protein Era [Streptococcus suis JS14] gi|329306631|gb|AEB81047.1| GTP-binding protein Era [Streptococcus suis ST3] Length = 299 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 47/178 (26%), Positives = 86/178 (48%), Gaps = 5/178 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKST N ++ +K+A++ + TR+++ G +DT GI K Sbjct: 8 VAILGRPNVGKSTFLNYVMGQKIAIMSDKAQTTRNKIMGIYTTEEEQIVFIDTPGIHKPK 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 ++ M + + E +LF++ + D I L++ +P+I+V NK+D Sbjct: 68 -TALGDFMVESAYSTLREVDTVLFMVPADEKRGKGDDMIMERLKQAKVPVILVVNKIDKV 126 Query: 125 IAQRNFYEI----YSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 + +I +DFKEIV ISA + L ++ + + + P + I ++ Sbjct: 127 HPDQLLEQIDDFRQQMDFKEIVPISATQGNNVNRLMEILKENLDEGFQYFPADQITDH 184 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKST +N ++G + ++ TR+ + + + I DT G+ KP Sbjct: 8 VAILGRPNVGKSTFLNYVMGQKIAIMSDKAQTTRNKIMGIYTTEEEQIVFIDTPGIHKPK 67 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +L V+ + ++R +T + ++ A K D I++ + V+L +NK D Sbjct: 68 T---ALGDFMVESAYSTLREVDTVLFMVPADEKRGKGDDMIMERLKQAKVPVILVVNKID 124 Query: 326 MV 327 V Sbjct: 125 KV 126 >gi|319896431|ref|YP_004134624.1| gtp-binding protein era homolog [Haemophilus influenzae F3031] gi|317431933|emb|CBY80281.1| GTP-binding protein era homolog [Haemophilus influenzae F3031] Length = 302 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 48/176 (27%), Positives = 83/176 (47%), Gaps = 6/176 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N+++ +K+++ TR R+ G VDT G+ + Sbjct: 13 IAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIKTEGAYQEIYVDTPGLHIEE 72 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN AI + LI+F++D D + + LR P+++ NK+D Sbjct: 73 KRAINRLMNRAASSAIGDVDLIIFVVDG-THWNADDEMVLNKLRNAKAPVVLAINKVDNI 131 Query: 125 IAQRNFYEIYS-----LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 + + + +F IV ISA+ EL ++ + ++ + P + + Sbjct: 132 KNKDDLLPFITDLSSKFNFAHIVPISAQRGNNVQELEKIVRQSLREGVHHFPEDYV 187 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 42/131 (32%), Positives = 70/131 (53%), Gaps = 7/131 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIF-DTAGMR-K 263 IA+VGRPNVGKSTL+N++LG +T ++ TR + + + EI+ DT G+ + Sbjct: 13 IAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRI-VGIKTEGAYQEIYVDTPGLHIE 71 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 R L + ++ V + I ++D T + D +++ + N VVLA+NK Sbjct: 72 EKRAINRLMNRAASSAIGDV---DLIIFVVDGT-HWNADDEMVLNKLRNAKAPVVLAINK 127 Query: 324 WDMVSDKLNLL 334 D + +K +LL Sbjct: 128 VDNIKNKDDLL 138 >gi|118587960|ref|ZP_01545370.1| GTP-binding protein Era [Stappia aggregata IAM 12614] gi|118439582|gb|EAV46213.1| GTP-binding protein Era [Stappia aggregata IAM 12614] Length = 335 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 54/175 (30%), Positives = 83/175 (47%), Gaps = 17/175 (9%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA++GAPN GKSTL N+LV K+++V + TR + G A+ +DT GI K Sbjct: 46 IALIGAPNAGKSTLINQLVGTKVSIVTHKVQTTRTIVRGVAMHGAAQLVFIDTPGIFKPK 105 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 + + M D +A LI L+D++ G+T I L + P +++ NK D Sbjct: 106 R-RLDRAMVDTAWGGARDADLIALLVDARKGLTEEVENILKRLSSQQAPKVLILNKTDVA 164 Query: 124 ------RIAQR-NFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHP 171 ++AQ+ N + + F+E +SA GT I F K P+ P Sbjct: 165 KREKLLQLAQKINEF----VRFEETFMVSALTGDGT----QTILDYFASKVPDGP 211 Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust. Identities = 45/158 (28%), Positives = 73/158 (46%), Gaps = 8/158 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G PN GKSTLIN+L+G + + TR V + DT G+ KP Sbjct: 46 IALIGAPNAGKSTLINQLVGTKVSIVTHKVQTTRTIVRGVAMHGAAQLVFIDTPGIFKPK 105 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 R L++ V + R + +L+DA ++ I+ + + VL LNK D Sbjct: 106 R---RLDRAMVDTAWGGARDADLIALLVDARKGLTEEVENILKRLSSQQAPKVLILNKTD 162 Query: 326 MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEG 363 V+ + LLQ + I + + ++ +S TG+G Sbjct: 163 -VAKREKLLQ--LAQKINEFVRFEETFM--VSALTGDG 195 >gi|68472595|ref|XP_719616.1| potential mitochondrial tRNA modification protein [Candida albicans SC5314] gi|68472852|ref|XP_719491.1| potential mitochondrial tRNA modification protein [Candida albicans SC5314] gi|46441310|gb|EAL00608.1| potential mitochondrial tRNA modification protein [Candida albicans SC5314] gi|46441440|gb|EAL00737.1| potential mitochondrial tRNA modification protein [Candida albicans SC5314] Length = 529 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 56/214 (26%), Positives = 105/214 (49%), Gaps = 24/214 (11%) Query: 175 IENNKRNEESPKENIT---SEGKSSVKNISKP------LRIAVVGRPNVGKSTLINRLLG 225 IE R KENI SE K+ + + +++A++G PN GKS+++N L Sbjct: 242 IEETDRMIRDVKENIAKIESEIKAYLSKVKSSQILLNGIQLALLGPPNAGKSSILNILAN 301 Query: 226 YNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRT 285 + + +G TRD + I + + + DTAG+R +S+EQ+ +K++ Q Sbjct: 302 KDAAIVSEIAGTTRDILDIPLEIGGYKVVVGDTAGIRSFEE-ADSIEQEGIKRAKQRSML 360 Query: 286 CETTIVLLDATIPFEKQDLRI---VDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAI 342 + IV+LD + EK+ L + + ++ +++ LNK D+ + + + I Sbjct: 361 ADFVIVVLDP-MSVEKEPLELKEHLKTLVKANKQMLIVLNKQDLFASR-------SEEMI 412 Query: 343 KNLPQIGDI---YINTISGRTGEGLDDLMVSVLE 373 N ++ D+ Y + +S TG G+D+L ++E Sbjct: 413 SNYSRLLDLPKNYFHVVSCSTGSGIDNLQKLLIE 446 Score = 43.9 bits (102), Expect = 0.061, Method: Compositional matrix adjust. Identities = 39/123 (31%), Positives = 59/123 (47%), Gaps = 7/123 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A++G PN GKS++ N L K A+V G TRD L I G + DTAGI + Sbjct: 282 LALLGPPNAGKSSILNILANKDAAIVSEIAGTTRDILDIPLEIGGYKVVVGDTAGIRSFE 341 Query: 65 NC-SIAKQMNDQTELAINEAHLILFLID----SKAGITPYDHAITSFLRKKNIPIIIVSN 119 SI ++ + + A ++ ++D K + +H T L K N ++IV N Sbjct: 342 EADSIEQEGIKRAKQRSMLADFVIVVLDPMSVEKEPLELKEHLKT--LVKANKQMLIVLN 399 Query: 120 KMD 122 K D Sbjct: 400 KQD 402 >gi|238881895|gb|EEQ45533.1| conserved hypothetical protein [Candida albicans WO-1] Length = 499 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 56/214 (26%), Positives = 105/214 (49%), Gaps = 24/214 (11%) Query: 175 IENNKRNEESPKENIT---SEGKSSVKNISKP------LRIAVVGRPNVGKSTLINRLLG 225 IE R KENI SE K+ + + +++A++G PN GKS+++N L Sbjct: 212 IEETDRMIRDVKENIAKIESEIKAYLSKVKSSQILLNGIQLALLGPPNAGKSSILNILAN 271 Query: 226 YNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRT 285 + + +G TRD + I + + + DTAG+R +S+EQ+ +K++ Q Sbjct: 272 KDAAIVSEIAGTTRDILDIPLEIGGYKVVVGDTAGIRSFEE-ADSIEQEGIKRAKQRSML 330 Query: 286 CETTIVLLDATIPFEKQDLRI---VDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAI 342 + IV+LD + EK+ L + + ++ +++ LNK D+ + + + I Sbjct: 331 ADLVIVVLDP-MSVEKEPLELKEHLKTLVKANKQMLIVLNKQDLFASR-------SEEMI 382 Query: 343 KNLPQIGDI---YINTISGRTGEGLDDLMVSVLE 373 N ++ D+ Y + +S TG G+D+L ++E Sbjct: 383 SNYSRLLDLPKNYFHVVSCSTGSGIDNLQKLLIE 416 Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust. Identities = 42/127 (33%), Positives = 60/127 (47%), Gaps = 15/127 (11%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI---- 60 +A++G PN GKS++ N L K A+V G TRD L I G + DTAGI Sbjct: 252 LALLGPPNAGKSSILNILANKDAAIVSEIAGTTRDILDIPLEIGGYKVVVGDTAGIRSFE 311 Query: 61 -ADGKNCSIAKQMNDQTELAINEAHLILFLID----SKAGITPYDHAITSFLRKKNIPII 115 AD K+ ++ L A L++ ++D K + +H T L K N ++ Sbjct: 312 EADSIEQEGIKRAKQRSML----ADLVIVVLDPMSVEKEPLELKEHLKT--LVKANKQML 365 Query: 116 IVSNKMD 122 IV NK D Sbjct: 366 IVLNKQD 372 >gi|182679392|ref|YP_001833538.1| GTP-binding protein Era [Beijerinckia indica subsp. indica ATCC 9039] gi|182635275|gb|ACB96049.1| GTP-binding protein Era [Beijerinckia indica subsp. indica ATCC 9039] Length = 316 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 55/183 (30%), Positives = 86/183 (46%), Gaps = 13/183 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A++GAPN GKSTL NRLV K+++V TR + G A VDT GI K Sbjct: 13 VALIGAPNAGKSTLINRLVGAKISIVSRKVQTTRCLVRGIATEGASQIIFVDTPGIFAPK 72 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 + + M +A ++ L+D++ GI AI + L + ++V NK+DT Sbjct: 73 R-RLDQAMVTSAWGGAGDADVVALLVDARKGIDEEVEAILAKLPQVRAKKLLVLNKIDTI 131 Query: 124 ---RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQK---YP-----NHPL 172 R+ +DF E ISA G +L +++ ++ K+ YP + PL Sbjct: 132 EPPRLLALAADLNARIDFSETFMISALRGHGVDKLKNLLGEMMKEGPWLYPEDQISDAPL 191 Query: 173 EMI 175 M+ Sbjct: 192 RML 194 Score = 43.1 bits (100), Expect = 0.087, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 54/122 (44%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++G PN GKSTLINRL+G + + TR V I DT G+ P Sbjct: 13 VALIGAPNAGKSTLINRLVGAKISIVSRKVQTTRCLVRGIATEGASQIIFVDTPGIFAPK 72 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 R L+Q V + + +L+DA +++ I+ + +L LNK D Sbjct: 73 R---RLDQAMVTSAWGGAGDADVVALLVDARKGIDEEVEAILAKLPQVRAKKLLVLNKID 129 Query: 326 MV 327 + Sbjct: 130 TI 131 >gi|261884860|ref|ZP_06008899.1| GTP-binding protein EngA [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 153 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 45/147 (30%), Positives = 71/147 (48%), Gaps = 2/147 (1%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 I +VG PNVGKS+LFNRL K+++A+ + G TRD + I+ ++D+ G+ D Sbjct: 4 IILVGRPNVGKSSLFNRLAKQRIAITSDVSGTTRDTNKAEIFIDDKNCILIDSGGLDDSN 63 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 ++N E A +I+F++D K D L N PI +V NK+D++ Sbjct: 64 ELFKNVKINTLNEAK--NADIIVFMVDGKNFPDEIDKRFFYELSNLNKPIALVVNKVDSK 121 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLG 151 + +E K I +S G Sbjct: 122 KDEERSWEFNEFGAKYIFNLSVSRPAG 148 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 32/126 (25%), Positives = 59/126 (46%), Gaps = 4/126 (3%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP 264 +I +VGRPNVGKS+L NRL +T SG TRD+ + + D+ G+ Sbjct: 3 KIILVGRPNVGKSSLFNRLAKQRIAITSDVSGTTRDTNKAEIFIDDKNCILIDSGGLDDS 62 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 + + ++++ T + + + + ++D ++ D R + N + L +NK Sbjct: 63 NELFKNVKINT----LNEAKNADIIVFMVDGKNFPDEIDKRFFYELSNLNKPIALVVNKV 118 Query: 325 DMVSDK 330 D D+ Sbjct: 119 DSKKDE 124 >gi|254827379|ref|ZP_05232066.1| tRNA modification GTPase TrmE [Listeria monocytogenes FSL N3-165] gi|258599757|gb|EEW13082.1| tRNA modification GTPase TrmE [Listeria monocytogenes FSL N3-165] Length = 457 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 39/132 (29%), Positives = 73/132 (55%), Gaps = 5/132 (3%) Query: 195 SSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIE 254 S K + + L A++GRPNVGKS+L+N+L+ + + +G TRD + N + P+ Sbjct: 211 SQGKILREGLATAIIGRPNVGKSSLLNQLIQEEKAIVTDIAGTTRDIIEEYVNVRGVPLR 270 Query: 255 IFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTG 314 + DTAG+R+ I E + V++S +++ + +++L+ +D + ++ G Sbjct: 271 LIDTAGIRETEDIVEKI---GVERSRKALADADFILLVLNQNEELTVEDEALFEAA--AG 325 Query: 315 HAVVLALNKWDM 326 H V+ LNK D+ Sbjct: 326 HNYVVVLNKTDL 337 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 44/158 (27%), Positives = 83/158 (52%), Gaps = 3/158 (1%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N+L++++ A+V + G TRD + + GV ++DTAGI + ++ Sbjct: 223 AIIGRPNVGKSSLLNQLIQEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAGIRETED 282 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 + K +++ A+ +A IL +++ +T D A+ N +++ ++T++ Sbjct: 283 I-VEKIGVERSRKALADADFILLVLNQNEELTVEDEALFEAAAGHNYVVVLNKTDLETKL 341 Query: 126 AQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 +E+ + IV S +D G L I +F Sbjct: 342 DIDRVHELAGEN--PIVSTSLVNDEGLEALEEAIKTLF 377 >gi|160903293|ref|YP_001568874.1| small GTP-binding protein [Petrotoga mobilis SJ95] gi|160360937|gb|ABX32551.1| small GTP-binding protein [Petrotoga mobilis SJ95] Length = 398 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 50/170 (29%), Positives = 88/170 (51%), Gaps = 7/170 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGV-IFNIVDTAGIADG 63 IAI G NVGKS+L N +V +++A+V N G T D +Y + + ++DT GI D Sbjct: 11 IAIAGRRNVGKSSLINAIVNQEIALVSNVAGTTTDPVYKSMELQPIGPVTLIDTPGIDD- 69 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + K+ ++ + A +A + + ++DS+ ++H+I K NIP IIV NK+D Sbjct: 70 -EGELGKKRIERAKRAFYKADVGVLVVDSEP--NGFEHSICDLFEKMNIPFIIVLNKIDQ 126 Query: 124 RIAQRNFYEIYSLDF-KEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPL 172 N ++Y F + ++E+S + + + + ++ K K PL Sbjct: 127 LNNVSNLKQLYINSFGRPVLEVSCKEKINIERVKEALTEL-KPKEEEIPL 175 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 37/133 (27%), Positives = 65/133 (48%), Gaps = 11/133 (8%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKN-HPIEIFDTAGMRKP 264 IA+ GR NVGKS+LIN ++ L + +G T D V S + P+ + DT G+ Sbjct: 11 IAIAGRRNVGKSSLINAIVNQEIALVSNVAGTTTDPVYKSMELQPIGPVTLIDTPGIDDE 70 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIP--FEKQDLRIVDSVFNTGHAVVLALN 322 L +K ++++ ++ + ++++D+ P FE I D ++ LN Sbjct: 71 GE----LGKKRIERAKRAFYKADVGVLVVDSE-PNGFEHS---ICDLFEKMNIPFIIVLN 122 Query: 323 KWDMVSDKLNLLQ 335 K D +++ NL Q Sbjct: 123 KIDQLNNVSNLKQ 135 >gi|16081154|ref|NP_391982.1| tRNA modification GTPase TrmE [Bacillus subtilis subsp. subtilis str. 168] gi|221312085|ref|ZP_03593932.1| tRNA modification GTPase TrmE [Bacillus subtilis subsp. subtilis str. 168] gi|221316410|ref|ZP_03598215.1| tRNA modification GTPase TrmE [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221321323|ref|ZP_03602617.1| tRNA modification GTPase TrmE [Bacillus subtilis subsp. subtilis str. JH642] gi|221325606|ref|ZP_03606900.1| tRNA modification GTPase TrmE [Bacillus subtilis subsp. subtilis str. SMY] gi|135725|sp|P25811|MNME_BACSU RecName: Full=tRNA modification GTPase mnmE gi|40025|emb|CAA44403.1| unnamed protein product [Bacillus subtilis] gi|467386|dbj|BAA05232.1| thiophen and furan oxidation [Bacillus subtilis] gi|2636649|emb|CAB16139.1| tRNA modification GTPase [Bacillus subtilis subsp. subtilis str. 168] Length = 459 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 38/129 (29%), Positives = 74/129 (57%), Gaps = 5/129 (3%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L ++GRPNVGKS+L+N L+ + + G TRD + N + P+ + D Sbjct: 216 KILREGLSTVIIGRPNVGKSSLLNSLVHEAKAIVTDIPGTTRDVIEEYVNVRGVPLRLVD 275 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ I E + V++S Q ++ + +++L+ + ++D+++ ++V G V Sbjct: 276 TAGIRETEDIVERI---GVERSRQVLKEADLILLVLNYSEELSEEDVKLFEAV--EGMDV 330 Query: 318 VLALNKWDM 326 ++ LNK D+ Sbjct: 331 IVILNKTDL 339 Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 38/116 (32%), Positives = 66/116 (56%), Gaps = 3/116 (2%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 I+G PNVGKS+L N LV + A+V + PG TRD + + GV +VDTAGI + ++ Sbjct: 226 IIGRPNVGKSSLLNSLVHEAKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDI 285 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + + +++ + EA LIL +++ ++ D + F + + +I++ NK D Sbjct: 286 -VERIGVERSRQVLKEADLILLVLNYSEELSEED--VKLFEAVEGMDVIVILNKTD 338 >gi|218134368|ref|ZP_03463172.1| hypothetical protein BACPEC_02262 [Bacteroides pectinophilus ATCC 43243] gi|217989753|gb|EEC55764.1| hypothetical protein BACPEC_02262 [Bacteroides pectinophilus ATCC 43243] Length = 463 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 57/193 (29%), Positives = 91/193 (47%), Gaps = 20/193 (10%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN- 65 I+G N GKS+L N L + A+V + G TRD L ++GVI N+ DTAGI D ++ Sbjct: 231 ILGKTNAGKSSLLNALAGEDRAIVTDIAGTTRDTLEESISLDGVILNLTDTAGIRDTEDI 290 Query: 66 ---CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 I K M A LI+++ D+ + D I F++ ++ +I++ NK D Sbjct: 291 VEKIGIEKAMK-----CAGNADLIIYVADATRNLDDNDKKILDFVKGRH--VIVLLNKTD 343 Query: 123 TRIAQRNFYEIYSL----DFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 N + + DF ++ ISA G EL I ++F + ++ N Sbjct: 344 V----ENVLSVEQMRAHTDFP-VLAISAREQTGIRELSDTIRQMFFAGQISSNDQIYITN 398 Query: 179 KRNEESPKENITS 191 R++ KE+I S Sbjct: 399 ARHKNMLKESINS 411 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 39/123 (31%), Positives = 67/123 (54%), Gaps = 5/123 (4%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 +R ++G+ N GKS+L+N L G +R + +G TRD++ S + + + DTAG+R Sbjct: 227 IRTVILGKTNAGKSSLLNALAGEDRAIVTDIAGTTRDTLEESISLDGVILNLTDTAGIRD 286 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 I E + ++K+M+ + I + DAT + D +I+D F G V++ LNK Sbjct: 287 TEDIVEKI---GIEKAMKCAGNADLIIYVADATRNLDDNDKKILD--FVKGRHVIVLLNK 341 Query: 324 WDM 326 D+ Sbjct: 342 TDV 344 >gi|157964906|ref|YP_001499730.1| tRNA modification GTPase TrmE [Rickettsia massiliae MTU5] gi|166991114|sp|A8F2P7|MNME_RICM5 RecName: Full=tRNA modification GTPase mnmE gi|157844682|gb|ABV85183.1| tRNA modification GTPase TrmE [Rickettsia massiliae MTU5] Length = 445 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 74/125 (59%), Gaps = 7/125 (5%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 L++A++G PNVGKS+L+N L+ + + + +G TRD + + +PI + DTAG+ + Sbjct: 216 LKLAIIGPPNVGKSSLLNFLMQRDIAIVSNIAGTTRDIIEGHLDIGGYPIILQDTAGIGE 275 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFN-TGHAVVLALN 322 S ++ +EQ+ +K+++ S +T + I++ DA EK D I + + N + +N Sbjct: 276 ES--SDIIEQEGIKRAINSAKTADIKIIMFDA----EKLDSSINEDIINLIDENTITIIN 329 Query: 323 KWDMV 327 K D++ Sbjct: 330 KIDLI 334 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/129 (33%), Positives = 71/129 (55%), Gaps = 9/129 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKS+L N L+++ +A+V N G TRD + G I G + DTAGI + + Sbjct: 218 LAIIGPPNVGKSSLLNFLMQRDIAIVSNIAGTTRDIIEGHLDIGGYPIILQDTAGIGE-E 276 Query: 65 NCSIAKQMNDQTELAINE---AHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 + I +Q + + AIN A + + + D++ + + I + + + I II NK+ Sbjct: 277 SSDIIEQ--EGIKRAINSAKTADIKIIMFDAEKLDSSINEDIINLIDENTITII---NKI 331 Query: 122 DTRIAQRNF 130 D A + F Sbjct: 332 DLIEASKIF 340 >gi|71891804|ref|YP_277533.1| tRNA modification GTPase TrmE [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|123641227|sp|Q494C0|MNME_BLOPB RecName: Full=tRNA modification GTPase mnmE gi|71795910|gb|AAZ40661.1| GTPase for tRNA modification and thiophene and furan oxidation [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 470 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 60/199 (30%), Positives = 94/199 (47%), Gaps = 11/199 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 I I G PN GKS+LFN LV A++ G TRD L+ +NG+ F+I DTAG+ Sbjct: 221 IVIAGKPNAGKSSLFNALVGIDRAIISTISGTTRDTLHEYIQLNGIAFHITDTAGLQKKS 280 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAIT-------SFLRKKNIPIIIV 117 + I + +T ++ A IL++ID +T ++ IT F + K PI I+ Sbjct: 281 DNEIEQIGMKRTWEELSNADHILWVIDPN-DVTNKENDITLKHVEKVLFCKNKKTPITII 339 Query: 118 SNKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 NK D +N I ++ I+ +SA + GT L + K K + Sbjct: 340 HNKSDL---TKNQIGISIINNYTIITLSALFNDGTDLLQEYLSNNIKSKIQQDCKSNLSE 396 Query: 178 NKRNEESPKENITSEGKSS 196 N+ N + + ++ + KSS Sbjct: 397 NQGNFIARRRHLNALEKSS 415 Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 36/136 (26%), Positives = 70/136 (51%), Gaps = 8/136 (5%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 ++I + G+PN GKS+L N L+G +R + + SG TRD++ I DTAG++K Sbjct: 219 IKIVIAGKPNAGKSSLFNALVGIDRAIISTISGTTRDTLHEYIQLNGIAFHITDTAGLQK 278 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD---LRIVDSVF---NTGHAV 317 S +EQ +K++ + + + + ++D K++ L+ V+ V N + Sbjct: 279 KS--DNEIEQIGMKRTWEELSNADHILWVIDPNDVTNKENDITLKHVEKVLFCKNKKTPI 336 Query: 318 VLALNKWDMVSDKLNL 333 + NK D+ +++ + Sbjct: 337 TIIHNKSDLTKNQIGI 352 >gi|324993803|gb|EGC25722.1| GTP-binding protein Era [Streptococcus sanguinis SK405] gi|324994878|gb|EGC26791.1| GTP-binding protein Era [Streptococcus sanguinis SK678] gi|327463077|gb|EGF09398.1| GTP-binding protein Era [Streptococcus sanguinis SK1] gi|327474678|gb|EGF20083.1| GTP-binding protein Era [Streptococcus sanguinis SK408] gi|327490236|gb|EGF22024.1| GTP-binding protein Era [Streptococcus sanguinis SK1058] Length = 299 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 49/179 (27%), Positives = 89/179 (49%), Gaps = 7/179 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKST N ++ +K+A++ + TR+++ G + +DT GI K Sbjct: 8 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM--- 121 ++ M + + E +LF++ + D I L+ +P+I+V NK+ Sbjct: 68 -TALGDFMVEAAYSTLREVDTVLFMVPADEPRGKGDDMIIERLKAAKVPVILVVNKIDKV 126 Query: 122 --DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 D +AQ + + +DFKEIV ISA S L ++ + ++ + P + I ++ Sbjct: 127 HPDQLLAQIDDFR-QQMDFKEIVPISALQGNNVSYLIDILSENLEEGFQYFPEDQITDH 184 Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKST +N ++G + ++ TR+ + + I DT G+ KP Sbjct: 8 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +L V+ + ++R +T + ++ A P K D I++ + V+L +NK D Sbjct: 68 T---ALGDFMVEAAYSTLREVDTVLFMVPADEPRGKGDDMIIERLKAAKVPVILVVNKID 124 Query: 326 MV 327 V Sbjct: 125 KV 126 >gi|315925604|ref|ZP_07921814.1| tRNA modification GTPase TrmE [Pseudoramibacter alactolyticus ATCC 23263] gi|315621145|gb|EFV01116.1| tRNA modification GTPase TrmE [Pseudoramibacter alactolyticus ATCC 23263] Length = 457 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 44/119 (36%), Positives = 71/119 (59%), Gaps = 5/119 (4%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 I+G PNVGKS+L N+L+++ A+V + PG TRD + I G+ F+I+DTAGI + + Sbjct: 229 ILGEPNVGKSSLLNKLIREDKALVTDIPGTTRDVVEAYINIEGIPFHIIDTAGIRETDDV 288 Query: 67 SIAKQMNDQTELAINEAHLILFLID-SKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + K ++++ ++ A LIL + D S+ D IT+F K P I + NK+D + Sbjct: 289 -VEKLGVEKSKQMMDRAELILMMTDVSRETSEDEDTLITAFQDK---PYIRIYNKIDLK 343 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/146 (27%), Positives = 67/146 (45%), Gaps = 7/146 (4%) Query: 155 LHSVIFKIFKQKYPNHPLEMIENNKRNEESPKENITSEGKSSVKNISKPLR----IAVVG 210 LH + F YP + +E + + ++ + + K R ++G Sbjct: 172 LHLMTFIDAAIDYPEYDIETVTGDTLRRSIDGLIVSVDALLDSAQMGKIYRNGVDTVILG 231 Query: 211 RPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITES 270 PNVGKS+L+N+L+ ++ L G TRD V N + P I DTAG+R+ + E Sbjct: 232 EPNVGKSSLLNKLIREDKALVTDIPGTTRDVVEAYINIEGIPFHIIDTAGIRETDDVVEK 291 Query: 271 LEQKTVKKSMQSVRTCETTIVLLDAT 296 L V+KS Q + E +++ D + Sbjct: 292 L---GVEKSKQMMDRAELILMMTDVS 314 >gi|217965982|ref|YP_002351660.1| tRNA modification GTPase TrmE [Listeria monocytogenes HCC23] gi|226225361|ref|YP_002759468.1| GTPase [Listeria monocytogenes Clip81459] gi|254824824|ref|ZP_05229825.1| tRNA modification GTPase TrmE [Listeria monocytogenes FSL J1-194] gi|254930915|ref|ZP_05264274.1| tRNA modification GTPase TrmE [Listeria monocytogenes HPB2262] gi|284800302|ref|YP_003412167.1| tRNA modification GTPase TrmE [Listeria monocytogenes 08-5578] gi|284993487|ref|YP_003415255.1| tRNA modification GTPase TrmE [Listeria monocytogenes 08-5923] gi|217335252|gb|ACK41046.1| tRNA modification GTPase TrmE [Listeria monocytogenes HCC23] gi|225877823|emb|CAS06538.1| Putative GTPase [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|284055864|gb|ADB66805.1| tRNA modification GTPase TrmE [Listeria monocytogenes 08-5578] gi|284058954|gb|ADB69893.1| tRNA modification GTPase TrmE [Listeria monocytogenes 08-5923] gi|293582461|gb|EFF94493.1| tRNA modification GTPase TrmE [Listeria monocytogenes HPB2262] gi|293594064|gb|EFG01825.1| tRNA modification GTPase TrmE [Listeria monocytogenes FSL J1-194] gi|307572401|emb|CAR85580.1| tRNA modification GTPase [Listeria monocytogenes L99] gi|328469044|gb|EGF39998.1| tRNA modification GTPase TrmE [Listeria monocytogenes 220] gi|332313241|gb|EGJ26336.1| tRNA modification GTPase mnmE [Listeria monocytogenes str. Scott A] Length = 457 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 39/132 (29%), Positives = 73/132 (55%), Gaps = 5/132 (3%) Query: 195 SSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIE 254 S K + + L A++GRPNVGKS+L+N+L+ + + +G TRD + N + P+ Sbjct: 211 SQGKILREGLATAIIGRPNVGKSSLLNQLIQEEKAIVTDIAGTTRDIIEEYVNVRGVPLR 270 Query: 255 IFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTG 314 + DTAG+R+ I E + V++S +++ + +++L+ +D + ++ G Sbjct: 271 LIDTAGIRETEDIVEKI---GVERSRKALADADFILLVLNQNEELTVEDEALFEAA--AG 325 Query: 315 HAVVLALNKWDM 326 H V+ LNK D+ Sbjct: 326 HNYVVVLNKTDL 337 Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 44/158 (27%), Positives = 82/158 (51%), Gaps = 3/158 (1%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N+L++++ A+V + G TRD + + GV ++DTAGI + ++ Sbjct: 223 AIIGRPNVGKSSLLNQLIQEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAGIRETED 282 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 + K +++ A+ +A IL +++ +T D A+ N +++ ++T++ Sbjct: 283 I-VEKIGVERSRKALADADFILLVLNQNEELTVEDEALFEAAAGHNYVVVLNKTDLETKL 341 Query: 126 AQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 E+ + IV S +D G L I +F Sbjct: 342 DINRVRELAGEN--PIVSTSLVNDEGLEALEEAIKTLF 377 >gi|254851886|ref|ZP_05241234.1| tRNA modification GTPase TrmE [Listeria monocytogenes FSL R2-503] gi|254992368|ref|ZP_05274558.1| tRNA modification GTPase TrmE [Listeria monocytogenes FSL J2-064] gi|300763431|ref|ZP_07073429.1| tRNA modification GTPase TrmE [Listeria monocytogenes FSL N1-017] gi|258605181|gb|EEW17789.1| tRNA modification GTPase TrmE [Listeria monocytogenes FSL R2-503] gi|300515708|gb|EFK42757.1| tRNA modification GTPase TrmE [Listeria monocytogenes FSL N1-017] Length = 457 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 39/132 (29%), Positives = 73/132 (55%), Gaps = 5/132 (3%) Query: 195 SSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIE 254 S K + + L A++GRPNVGKS+L+N+L+ + + +G TRD + N + P+ Sbjct: 211 SQGKILREGLATAIIGRPNVGKSSLLNQLIQEEKAIVTDIAGTTRDIIEEYVNVRGVPLR 270 Query: 255 IFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTG 314 + DTAG+R+ I E + V++S +++ + +++L+ +D + ++ G Sbjct: 271 LIDTAGIRETEDIVEKI---GVERSRKALADADFILLVLNQNEELTVEDEALFEAA--AG 325 Query: 315 HAVVLALNKWDM 326 H V+ LNK D+ Sbjct: 326 HNYVVVLNKTDL 337 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 44/158 (27%), Positives = 82/158 (51%), Gaps = 3/158 (1%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N+L++++ A+V + G TRD + + GV ++DTAGI + ++ Sbjct: 223 AIIGRPNVGKSSLLNQLIQEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAGIRETED 282 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 + K +++ A+ +A IL +++ +T D A+ N +++ ++T++ Sbjct: 283 I-VEKIGVERSRKALADADFILLVLNQNEELTVEDEALFEAAAGHNYVVVLNKTDLETKL 341 Query: 126 AQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 E+ + IV S +D G L I +F Sbjct: 342 DINRVRELAGEN--PIVSTSLVNDEGLEALEEAIKTLF 377 >gi|16802002|ref|NP_472270.1| tRNA modification GTPase TrmE [Listeria innocua Clip11262] gi|21363013|sp|Q926U7|MNME_LISIN RecName: Full=tRNA modification GTPase mnmE gi|16415484|emb|CAC98168.1| lin2943 [Listeria innocua Clip11262] Length = 457 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 39/132 (29%), Positives = 73/132 (55%), Gaps = 5/132 (3%) Query: 195 SSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIE 254 S K + + L A++GRPNVGKS+L+N+L+ + + +G TRD + N + P+ Sbjct: 211 SQGKILREGLATAIIGRPNVGKSSLLNQLIQEEKAIVTDIAGTTRDIIEEYVNVRGVPLR 270 Query: 255 IFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTG 314 + DTAG+R+ I E + V++S +++ + +++L+ +D + ++ G Sbjct: 271 LIDTAGIRETEDIVEKI---GVERSRKALADADFILLVLNQNEELTVEDEALFEAA--AG 325 Query: 315 HAVVLALNKWDM 326 H V+ LNK D+ Sbjct: 326 HNYVVVLNKTDL 337 Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 44/158 (27%), Positives = 82/158 (51%), Gaps = 3/158 (1%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N+L++++ A+V + G TRD + + GV ++DTAGI + ++ Sbjct: 223 AIIGRPNVGKSSLLNQLIQEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAGIRETED 282 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 + K +++ A+ +A IL +++ +T D A+ N +++ ++T++ Sbjct: 283 I-VEKIGVERSRKALADADFILLVLNQNEELTVEDEALFEAAAGHNYVVVLNKTDLETKL 341 Query: 126 AQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 E+ + IV S +D G L I +F Sbjct: 342 DINRVRELAGEN--PIVSTSLVNDEGLEALEEAIKALF 377 >gi|313621862|gb|EFR92546.1| tRNA modification GTPase MnmE [Listeria innocua FSL J1-023] Length = 340 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 39/132 (29%), Positives = 73/132 (55%), Gaps = 5/132 (3%) Query: 195 SSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIE 254 S K + + L A++GRPNVGKS+L+N+L+ + + +G TRD + N + P+ Sbjct: 94 SQGKILREGLATAIIGRPNVGKSSLLNQLIQEEKAIVTDIAGTTRDIIEEYVNVRGVPLR 153 Query: 255 IFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTG 314 + DTAG+R+ I E + V++S +++ + +++L+ +D + ++ G Sbjct: 154 LIDTAGIRETEDIVEKI---GVERSRKALADADFILLVLNQNEELTVEDEALFEAA--AG 208 Query: 315 HAVVLALNKWDM 326 H V+ LNK D+ Sbjct: 209 HNYVVVLNKTDL 220 Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 44/158 (27%), Positives = 81/158 (51%), Gaps = 3/158 (1%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N+L++++ A+V + G TRD + + GV ++DTAGI + ++ Sbjct: 106 AIIGRPNVGKSSLLNQLIQEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAGIRETED 165 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 + K +++ A+ +A IL +++ +T D A+ N +++ ++T++ Sbjct: 166 I-VEKIGVERSRKALADADFILLVLNQNEELTVEDEALFEAAAGHNYVVVLNKTDLETKL 224 Query: 126 AQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 E+ IV S +D G L I +F Sbjct: 225 DIDRVRELAG--ENPIVATSLVNDEGLEALEEAIKALF 260 >gi|312081419|ref|XP_003143020.1| hypothetical protein LOAG_07439 [Loa loa] gi|307761818|gb|EFO21052.1| hypothetical protein LOAG_07439 [Loa loa] Length = 451 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 44/135 (32%), Positives = 78/135 (57%), Gaps = 13/135 (9%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 I++ LRI ++G+ NVGKS+L NR+ + + G TRDS+ + + P+ I DTA Sbjct: 213 INEGLRIVILGQTNVGKSSLFNRMANRDMAIVSDIGGTTRDSLEATIQLSSIPVTIVDTA 272 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATI--PFEKQDLRIVDSVFNTGHA- 316 G+R+ + +SLE + ++++++ + IV++D+++ FE D+R SV + H Sbjct: 273 GIREI--LLDSLEAEGIRRTLRRAAEADIAIVVIDSSMCKDFET-DVR---SVLSWCHLK 326 Query: 317 ----VVLALNKWDMV 327 V +ALNK D+ Sbjct: 327 KETPVFVALNKCDIC 341 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 42/122 (34%), Positives = 63/122 (51%), Gaps = 5/122 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 I I+G NVGKS+LFNR+ + MA+V + G TRD L ++ + IVDTAGI + Sbjct: 219 IVILGQTNVGKSSLFNRMANRDMAIVSDIGGTTRDSLEATIQLSSIPVTIVDTAGIREIL 278 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLR----KKNIPIIIVSNK 120 S+ + +T EA + + +IDS ++ + S L KK P+ + NK Sbjct: 279 LDSLEAEGIRRTLRRAAEADIAIVVIDSSM-CKDFETDVRSVLSWCHLKKETPVFVALNK 337 Query: 121 MD 122 D Sbjct: 338 CD 339 >gi|254830753|ref|ZP_05235408.1| tRNA modification GTPase TrmE [Listeria monocytogenes 10403S] Length = 457 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 39/132 (29%), Positives = 73/132 (55%), Gaps = 5/132 (3%) Query: 195 SSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIE 254 S K + + L A++GRPNVGKS+L+N+L+ + + +G TRD + N + P+ Sbjct: 211 SQGKILREGLATAIIGRPNVGKSSLLNQLIQEEKAIVTDIAGTTRDIIEEYVNVRGVPLR 270 Query: 255 IFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTG 314 + DTAG+R+ I E + V++S +++ + +++L+ +D + ++ G Sbjct: 271 LIDTAGIRETEDIVEKI---GVERSRKALADADFILLVLNQNEELTVEDEALFEAA--AG 325 Query: 315 HAVVLALNKWDM 326 H V+ LNK D+ Sbjct: 326 HNYVVVLNKTDL 337 Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 44/158 (27%), Positives = 82/158 (51%), Gaps = 3/158 (1%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N+L++++ A+V + G TRD + + GV ++DTAGI + ++ Sbjct: 223 AIIGRPNVGKSSLLNQLIQEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAGIRETED 282 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 + K +++ A+ +A IL +++ +T D A+ N +++ ++T++ Sbjct: 283 I-VEKIGVERSRKALADADFILLVLNQNEELTVEDEALFEAAAGHNYVVVLNKTDLETKL 341 Query: 126 AQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 E+ + IV S +D G L I +F Sbjct: 342 DINRVRELAGEN--PIVSTSLVNDEGLEALEEAIKTLF 377 >gi|16804848|ref|NP_466333.1| tRNA modification GTPase TrmE [Listeria monocytogenes EGD-e] gi|47095618|ref|ZP_00233226.1| tRNA modification GTPase TrmE [Listeria monocytogenes str. 1/2a F6854] gi|224502775|ref|ZP_03671082.1| tRNA modification GTPase TrmE [Listeria monocytogenes FSL R2-561] gi|254899731|ref|ZP_05259655.1| tRNA modification GTPase TrmE [Listeria monocytogenes J0161] gi|254913066|ref|ZP_05263078.1| tRNA modification GTPase trmE [Listeria monocytogenes J2818] gi|254937447|ref|ZP_05269144.1| tRNA modification GTPase TrmE [Listeria monocytogenes F6900] gi|255028100|ref|ZP_05300051.1| tRNA modification GTPase TrmE [Listeria monocytogenes LO28] gi|21363006|sp|Q8Y3M4|MNME_LISMO RecName: Full=tRNA modification GTPase mnmE gi|16412311|emb|CAD01024.1| lmo2811 [Listeria monocytogenes EGD-e] gi|47016048|gb|EAL06973.1| tRNA modification GTPase TrmE [Listeria monocytogenes str. 1/2a F6854] gi|258610049|gb|EEW22657.1| tRNA modification GTPase TrmE [Listeria monocytogenes F6900] gi|293591067|gb|EFF99401.1| tRNA modification GTPase trmE [Listeria monocytogenes J2818] Length = 457 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 39/132 (29%), Positives = 73/132 (55%), Gaps = 5/132 (3%) Query: 195 SSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIE 254 S K + + L A++GRPNVGKS+L+N+L+ + + +G TRD + N + P+ Sbjct: 211 SQGKILREGLATAIIGRPNVGKSSLLNQLIQEEKAIVTDIAGTTRDIIEEYVNVRGVPLR 270 Query: 255 IFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTG 314 + DTAG+R+ I E + V++S +++ + +++L+ +D + ++ G Sbjct: 271 LIDTAGIRETEDIVEKI---GVERSRKALADADFILLVLNQNEELTVEDEALFEAA--AG 325 Query: 315 HAVVLALNKWDM 326 H V+ LNK D+ Sbjct: 326 HNYVVVLNKTDL 337 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 44/158 (27%), Positives = 82/158 (51%), Gaps = 3/158 (1%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N+L++++ A+V + G TRD + + GV ++DTAGI + ++ Sbjct: 223 AIIGRPNVGKSSLLNQLIQEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAGIRETED 282 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 + K +++ A+ +A IL +++ +T D A+ N +++ ++T++ Sbjct: 283 I-VEKIGVERSRKALADADFILLVLNQNEELTVEDEALFEAAAGHNYVVVLNKTDLETKL 341 Query: 126 AQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 E+ + IV S +D G L I +F Sbjct: 342 DIDRVRELAGEN--PIVSTSLVNDEGLEALEEAIKTLF 377 >gi|222152198|ref|YP_002561358.1| tRNA modification GTPase TrmE [Macrococcus caseolyticus JCSC5402] gi|222121327|dbj|BAH18662.1| tRNA modification GTPase TrmE [Macrococcus caseolyticus JCSC5402] Length = 454 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 71/119 (59%), Gaps = 1/119 (0%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PNVGKS++ N L++ A+V G TRD L + GV +VDTAGI + ++ Sbjct: 221 IVGKPNVGKSSMLNNLIQDNKAIVTEIAGTTRDVLEEYVNVRGVPLRLVDTAGIRETEDI 280 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 + K +++ A+ +A LIL+++++ +T D+ + ++ +++ +II ++T++ Sbjct: 281 -VEKIGVERSREALKKADLILYVLNNNEILTEEDYKLAEIIKNEDVIVIINKTDLETKL 338 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 38/136 (27%), Positives = 78/136 (57%), Gaps = 6/136 (4%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L +VG+PNVGKS+++N L+ N+ + +G TRD + N + P+ + D Sbjct: 211 KILREGLSTVIVGKPNVGKSSMLNNLIQDNKAIVTEIAGTTRDVLEEYVNVRGVPLRLVD 270 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ I E + V++S ++++ + + +L+ ++D ++ + + N V Sbjct: 271 TAGIRETEDIVEKI---GVERSREALKKADLILYVLNNNEILTEEDYKLAEIIKN--EDV 325 Query: 318 VLALNKWDMVSDKLNL 333 ++ +NK D+ + KL+L Sbjct: 326 IVIINKTDLET-KLDL 340 >gi|121703576|ref|XP_001270052.1| mitochondrial GTPase (Mss1), putative [Aspergillus clavatus NRRL 1] gi|119398196|gb|EAW08626.1| mitochondrial GTPase (Mss1), putative [Aspergillus clavatus NRRL 1] Length = 572 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 61/245 (24%), Positives = 117/245 (47%), Gaps = 38/245 (15%) Query: 151 GTSELHSVIFKIFKQK--YPNHPLEMI---ENNKRNEESPKENITS----------EGKS 195 G S+ S +++++Q+ Y LE + ++ +ESP E I+S + K Sbjct: 190 GASDALSKRYELWRQQLLYARGELEALIDFSEDQHFDESPVELISSVAVQVRALQAQLKL 249 Query: 196 SVKNISKP------LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWK 249 V+N SK ++IA++G PN GKS+L+NR++G + ++ G TRD V + + Sbjct: 250 HVENASKGELLRNGIKIALLGAPNAGKSSLLNRVVGKEAAIVSTEEGTTRDIVDVGVDVG 309 Query: 250 NHPIEIFDTAGMRKPSR-----ITESLEQKTVKKSMQSVRTCETTIVLLDAT-------- 296 ++ D AG+R + + ++E++ ++++ + +V+L Sbjct: 310 GWYCKLGDMAGIRSENSSQRTVVIGAVEKEGIRRARARALESDVIVVVLSLEEGANGSPY 369 Query: 297 -IPFEKQDLRIVDSVFNTGHAVVLALNKWDM--VSDKLNL-LQDLRTKAIKNLPQIGDIY 352 + E++ + V G +V+A+NK D V+D+L L DLR + P + + Sbjct: 370 RLSVEQEVVDAVSDCVQAGKCIVVAINKCDRLPVADRLGQPLHDLRERIRTLFPAVPEKR 429 Query: 353 INTIS 357 I +IS Sbjct: 430 IFSIS 434 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 34/56 (60%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 IA++GAPN GKS+L NR+V K+ A+V G TRD + + G + D AGI Sbjct: 266 IALLGAPNAGKSSLLNRVVGKEAAIVSTEEGTTRDIVDVGVDVGGWYCKLGDMAGI 321 >gi|117619280|ref|YP_855344.1| GTP-binding protein Era [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560687|gb|ABK37635.1| GTP-binding protein Era [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 299 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 43/148 (29%), Positives = 74/148 (50%), Gaps = 6/148 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N+L+ +K+++ P TR R+ G VDT G+ + Sbjct: 10 VAIVGRPNVGKSTLLNKLLGQKVSITSKKPQTTRHRILGIDTEENYQTIYVDTPGLHIEE 69 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN ++ + +++F++D T D + LR P+++ NK+D Sbjct: 70 KRAINRLMNRAATSSLGDVAMVVFMVDG-THWTKDDEMVLGKLRHLKCPVVLAVNKIDNV 128 Query: 125 IAQRNF-----YEIYSLDFKEIVEISAE 147 + + + ++F I+ ISAE Sbjct: 129 KEKEDLLPHLEWLGQQMNFAHILPISAE 156 Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 43/133 (32%), Positives = 67/133 (50%), Gaps = 5/133 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMR-KP 264 +A+VGRPNVGKSTL+N+LLG +T + TR + +N+ DT G+ + Sbjct: 10 VAIVGRPNVGKSTLLNKLLGQKVSITSKKPQTTRHRILGIDTEENYQTIYVDTPGLHIEE 69 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 R L + S+ V + ++D T + K D ++ + + VVLA+NK Sbjct: 70 KRAINRLMNRAATSSLGDVAMV---VFMVDGT-HWTKDDEMVLGKLRHLKCPVVLAVNKI 125 Query: 325 DMVSDKLNLLQDL 337 D V +K +LL L Sbjct: 126 DNVKEKEDLLPHL 138 >gi|46909000|ref|YP_015389.1| tRNA modification GTPase TrmE [Listeria monocytogenes serotype 4b str. F2365] gi|47093270|ref|ZP_00231041.1| tRNA modification GTPase TrmE [Listeria monocytogenes str. 4b H7858] gi|290891992|ref|ZP_06554989.1| tRNA modification GTPase TrmE [Listeria monocytogenes FSL J2-071] gi|67461967|sp|Q71VV0|MNME_LISMF RecName: Full=tRNA modification GTPase mnmE gi|46882273|gb|AAT05566.1| tRNA modification GTPase TrmE [Listeria monocytogenes serotype 4b str. F2365] gi|47018344|gb|EAL09106.1| tRNA modification GTPase TrmE [Listeria monocytogenes str. 4b H7858] gi|290558586|gb|EFD92103.1| tRNA modification GTPase TrmE [Listeria monocytogenes FSL J2-071] Length = 457 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 39/132 (29%), Positives = 73/132 (55%), Gaps = 5/132 (3%) Query: 195 SSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIE 254 S K + + L A++GRPNVGKS+L+N+L+ + + +G TRD + N + P+ Sbjct: 211 SQGKILREGLATAIIGRPNVGKSSLLNQLIQEEKAIVTDIAGTTRDIIEEYVNVRGVPLR 270 Query: 255 IFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTG 314 + DTAG+R+ I E + V++S +++ + +++L+ +D + ++ G Sbjct: 271 LIDTAGIRETEDIVEKI---GVERSRKALADADFILLVLNQNEELTVEDEALFEAA--AG 325 Query: 315 HAVVLALNKWDM 326 H V+ LNK D+ Sbjct: 326 HNYVVVLNKTDL 337 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 44/158 (27%), Positives = 82/158 (51%), Gaps = 3/158 (1%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N+L++++ A+V + G TRD + + GV ++DTAGI + ++ Sbjct: 223 AIIGRPNVGKSSLLNQLIQEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAGIRETED 282 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 + K +++ A+ +A IL +++ +T D A+ N +++ ++T++ Sbjct: 283 I-VEKIGVERSRKALADADFILLVLNQNEELTVEDEALFEAAAGHNYVVVLNKTDLETKL 341 Query: 126 AQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 E+ + IV S +D G L I +F Sbjct: 342 DIDRVRELAGEN--PIVSTSLVNDEGLEALEEAIKTLF 377 >gi|311032250|ref|ZP_07710340.1| tRNA modification GTPase TrmE [Bacillus sp. m3-13] Length = 462 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 49/161 (30%), Positives = 85/161 (52%), Gaps = 7/161 (4%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 I+G PNVGKS+L N LV + A+V + PG TRD + + GV +VDTAGI + ++ Sbjct: 229 IIGRPNVGKSSLLNSLVHENKAIVTDIPGTTRDVIEEYVSVRGVPLRLVDTAGIRETEDI 288 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD--TR 124 + + +++ + +A LIL ++++ +T D + F K + +I++ NK D T+ Sbjct: 289 -VERIGVERSREVLKKADLILLVLNNNDDLTMEDKQL--FEAVKGMDVIVIVNKTDLPTK 345 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQ 165 I E+ + ++ S + + G EL I +F Q Sbjct: 346 IDIGQVKELA--NHHTVISTSLKEEQGIDELEEAISSMFFQ 384 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 36/129 (27%), Positives = 72/129 (55%), Gaps = 5/129 (3%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L ++GRPNVGKS+L+N L+ N+ + G TRD + + + P+ + D Sbjct: 219 KILREGLSTVIIGRPNVGKSSLLNSLVHENKAIVTDIPGTTRDVIEEYVSVRGVPLRLVD 278 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ I E + V++S + ++ + +++L+ +D ++ ++V G V Sbjct: 279 TAGIRETEDIVERI---GVERSREVLKKADLILLVLNNNDDLTMEDKQLFEAV--KGMDV 333 Query: 318 VLALNKWDM 326 ++ +NK D+ Sbjct: 334 IVIVNKTDL 342 >gi|308174317|ref|YP_003921022.1| GTP-binding protein [Bacillus amyloliquefaciens DSM 7] gi|307607181|emb|CBI43552.1| GTP-binding protein [Bacillus amyloliquefaciens DSM 7] Length = 301 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 45/146 (30%), Positives = 75/146 (51%), Gaps = 5/146 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 ++I+G PNVGKST NR++ +K+A++ + P TR+++ G +DT GI K Sbjct: 11 VSIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKVQGVLTTGTSQTIFIDTPGIHKPK 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + M + + E L+LF+I+++ G D I L + + P+ ++ NK+D Sbjct: 71 H-KLGDFMMKVAQNTLKEVDLVLFMINAEEGYGKGDEFIIEKLGQTSTPVFLIVNKIDKI 129 Query: 125 IAQRNFYEI----YSLDFKEIVEISA 146 + I FKEIV ISA Sbjct: 130 HPDQLLLLIDEYRTRYPFKEIVPISA 155 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 4/132 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 ++++GRPNVGKST +NR++G + + TR+ V DT G+ KP Sbjct: 11 VSIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKVQGVLTTGTSQTIFIDTPGIHKPK 70 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L +K + +++ + + +++A + K D I++ + T V L +NK D Sbjct: 71 H---KLGDFMMKVAQNTLKEVDLVLFMINAEEGYGKGDEFIIEKLGQTSTPVFLIVNKID 127 Query: 326 MVS-DKLNLLQD 336 + D+L LL D Sbjct: 128 KIHPDQLLLLID 139 >gi|328554264|gb|AEB24756.1| GTPase Era [Bacillus amyloliquefaciens TA208] gi|328912661|gb|AEB64257.1| GTP-binding protein [Bacillus amyloliquefaciens LL3] Length = 301 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 45/146 (30%), Positives = 75/146 (51%), Gaps = 5/146 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 ++I+G PNVGKST NR++ +K+A++ + P TR+++ G +DT GI K Sbjct: 11 VSIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKVQGVLTTGTSQTIFIDTPGIHKPK 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + M + + E L+LF+I+++ G D I L + + P+ ++ NK+D Sbjct: 71 H-KLGDFMMKVAQNTLKEVDLVLFMINAEEGYGKGDEFIIEKLGQTSTPVFLIVNKIDKI 129 Query: 125 IAQRNFYEI----YSLDFKEIVEISA 146 + I FKEIV ISA Sbjct: 130 HPDQLLLLIDEYRTRYPFKEIVPISA 155 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 4/132 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 ++++GRPNVGKST +NR++G + + TR+ V DT G+ KP Sbjct: 11 VSIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKVQGVLTTGTSQTIFIDTPGIHKPK 70 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L +K + +++ + + +++A + K D I++ + T V L +NK D Sbjct: 71 H---KLGDFMMKVAQNTLKEVDLVLFMINAEEGYGKGDEFIIEKLGQTSTPVFLIVNKID 127 Query: 326 MVS-DKLNLLQD 336 + D+L LL D Sbjct: 128 KIHPDQLLLLID 139 >gi|206895094|ref|YP_002246517.1| tRNA modification GTPase TrmE [Coprothermobacter proteolyticus DSM 5265] gi|206737711|gb|ACI16789.1| tRNA modification GTPase TrmE [Coprothermobacter proteolyticus DSM 5265] Length = 431 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 43/137 (31%), Positives = 71/137 (51%), Gaps = 3/137 (2%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 ++ I G PNVGKS+L N LV + ++V PG TRD + ++ + N+VDTAG+ Sbjct: 209 SLVIAGRPNVGKSSLMNALVGMERSIVSQIPGTTRDYIEQYTVLGKIPVNVVDTAGLRHT 268 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + I ++ I EA L++FL D+ G T D + + ++++ I+V NK+D Sbjct: 269 DD-PIEQEGVKLALRRIEEADLVIFLYDASTGWTDEDKQMFNLIQEEK--TIVVGNKIDK 325 Query: 124 RIAQRNFYEIYSLDFKE 140 + Y + KE Sbjct: 326 GKGNEQHPKAYFVSAKE 342 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 34/112 (30%), Positives = 59/112 (52%), Gaps = 3/112 (2%) Query: 192 EGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNH 251 E + + + K + + + GRPNVGKS+L+N L+G R + G TRD + Sbjct: 196 ESAKTAEILRKGISLVIAGRPNVGKSSLMNALVGMERSIVSQIPGTTRDYIEQYTVLGKI 255 Query: 252 PIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 P+ + DTAG+R + +EQ+ VK +++ + + I L DA+ + +D Sbjct: 256 PVNVVDTAGLR---HTDDPIEQEGVKLALRRIEEADLVIFLYDASTGWTDED 304 >gi|154686789|ref|YP_001421950.1| GTP-binding protein Era [Bacillus amyloliquefaciens FZB42] gi|154352640|gb|ABS74719.1| Era [Bacillus amyloliquefaciens FZB42] Length = 301 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 45/146 (30%), Positives = 75/146 (51%), Gaps = 5/146 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 ++I+G PNVGKST NR++ +K+A++ + P TR+++ G +DT GI K Sbjct: 11 VSIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKVQGVLTTGTSQTIFIDTPGIHKPK 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + M + + E L+LF+I+++ G D I L + + P+ ++ NK+D Sbjct: 71 H-KLGDFMMKVAQNTLKEVDLVLFMINAEEGYGKGDEFIIEKLGQTSTPVFLIVNKIDKI 129 Query: 125 IAQRNFYEI----YSLDFKEIVEISA 146 + I FKEIV ISA Sbjct: 130 HPDQLLLLIDEYRTRYPFKEIVPISA 155 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 4/132 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 ++++GRPNVGKST +NR++G + + TR+ V DT G+ KP Sbjct: 11 VSIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKVQGVLTTGTSQTIFIDTPGIHKPK 70 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L +K + +++ + + +++A + K D I++ + T V L +NK D Sbjct: 71 H---KLGDFMMKVAQNTLKEVDLVLFMINAEEGYGKGDEFIIEKLGQTSTPVFLIVNKID 127 Query: 326 MVS-DKLNLLQD 336 + D+L LL D Sbjct: 128 KIHPDQLLLLID 139 >gi|156094225|ref|XP_001613150.1| hypothetical protein [Plasmodium vivax SaI-1] gi|148802024|gb|EDL43423.1| hypothetical protein, conserved [Plasmodium vivax] Length = 766 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 65/294 (22%), Positives = 133/294 (45%), Gaps = 20/294 (6%) Query: 184 SPKENITSEGKSSVKNISKP--LRIAVVGRPNVGKSTLINRLLGYNRL-------LTGSQ 234 +P+E+ TSE ++ + P L++ +G N GK+TLI +L + L G + Sbjct: 459 TPEEDATSEEDATPSGTATPPHLQVCFLGERNCGKTTLIEAILRRPIVREQDVAELFGRK 518 Query: 235 SGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITES----LEQKTVKKSMQSVRTCETTI 290 I RD ++ +N I I DT + K R E E++ V ++ C Sbjct: 519 KYINRD---LTVEHRNVQITIADTCSLTKQHRFKEEDSHHEEERRVFTNVHRSDLCVYVK 575 Query: 291 VLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIG- 349 + + ++D +++ + +++ + K D + L+ ++ R + + + Sbjct: 576 EAKENNLSVSREDKKMIFYLLRKKKNIIVVVTKTDAI---LSRFEEKRNEFLSSFCSSFS 632 Query: 350 DIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNR 409 DI + ++ + L+ + I+K+ RI TS LN +L + P P + + Sbjct: 633 DIPVLFLNPNNQMHVQTLLNRFIHIHKMSHLRIPTSTLNLFLIRFLQLFPIPWVRKKKCS 692 Query: 410 LKYITQIQSSPPSFLIFCTFPNKIPESYKRYLINRLRINFSLSGIPIRMCFQSS 463 KYI Q+ ++P +FLIF + +P +Y + +L+ F L + ++ F+++ Sbjct: 693 FKYIRQVNTNPVTFLIFTNLYSNVPSNYLSFFKKKLKDQFRLRSVNVQFIFRTT 746 >gi|27904530|ref|NP_777656.1| tRNA modification GTPase TrmE [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|29839495|sp|P59569|MNME_BUCBP RecName: Full=tRNA modification GTPase mnmE gi|27903927|gb|AAO26761.1| putative tRNA modification GTPase trmE [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 459 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 59/185 (31%), Positives = 91/185 (49%), Gaps = 20/185 (10%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG- 63 + I GAPN GKS+L N L A+V N PG TRD +Y IINGV+F ++DTAG+ Sbjct: 222 VVISGAPNSGKSSLLNALSLTNRAIVTNFPGTTRDVIYENIIINGVLFILIDTAGLRITN 281 Query: 64 ---KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLR--KKNIPIIIVS 118 +N I + N+ I A ILF+ID + +F++ K I IV Sbjct: 282 NPIENIGIERAWNE-----IKLAEHILFVIDGSRSVQNQLKNYNNFIKSLSKTSCITIVF 336 Query: 119 NKMDTRIAQRNFYEIYSLDFKEI---VEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 NK D + ++I S D + + V +S++ +G L ++ FK + + E + Sbjct: 337 NKSDL-----SKFKINS-DLRNLNNGVLVSSKTGVGIEALRQHLYFSFKSSFEVNNSEGV 390 Query: 176 ENNKR 180 + +R Sbjct: 391 VSARR 395 Score = 40.0 bits (92), Expect = 0.91, Method: Compositional matrix adjust. Identities = 37/144 (25%), Positives = 71/144 (49%), Gaps = 13/144 (9%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + +++ + G PN GKS+L+N L NR + + G TRD + + + DTA Sbjct: 216 LREGIKVVISGAPNSGKSSLLNALSLTNRAIVTNFPGTTRDVIYENIIINGVLFILIDTA 275 Query: 260 GMRKPSRITES-LEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLR----IVDSVFNTG 314 G+ RIT + +E ++++ ++ E + ++D + + Q L+ + S+ T Sbjct: 276 GL----RITNNPIENIGIERAWNEIKLAEHILFVIDGSRSVQNQ-LKNYNNFIKSLSKT- 329 Query: 315 HAVVLALNKWDMVSDKLNLLQDLR 338 + + NK D+ K+N DLR Sbjct: 330 SCITIVFNKSDLSKFKIN--SDLR 351 >gi|52424422|ref|YP_087559.1| GTP-binding protein Era [Mannheimia succiniciproducens MBEL55E] gi|52306474|gb|AAU36974.1| Era protein [Mannheimia succiniciproducens MBEL55E] Length = 317 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 53/185 (28%), Positives = 89/185 (48%), Gaps = 24/185 (12%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYG-------QAIINGVIFNIVDT 57 +AIVG PNVGKSTL N+++ +K+++ TR R+ G QAI VDT Sbjct: 27 VAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIHTEGPYQAI-------YVDT 79 Query: 58 AGIADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGI--TPYDHAITSFLRKKNIPII 115 G+ + +I + MN AI++ LI+F++D GI D + + LR P++ Sbjct: 80 PGLHIEEKRAINRLMNRAASSAISDVDLIIFVVD---GIHWNADDEMVLNKLRASKAPVV 136 Query: 116 IVSNKMDTRIAQRNFYEIYS-----LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNH 170 + NK+D + + +FKEI+ ISA+ L V+ + ++ + Sbjct: 137 LAINKIDNIKNKDELLPFITELSGKFNFKEIIPISAQRGNNVHNLQKVVRQSLRKGVHHF 196 Query: 171 PLEMI 175 P + + Sbjct: 197 PEDYV 201 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 41/131 (31%), Positives = 67/131 (51%), Gaps = 7/131 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS-VSISWNWKNHPIEIFDTAGMR-K 263 +A+VGRPNVGKSTL+N++LG +T ++ TR V I I + DT G+ + Sbjct: 27 VAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIHTEGPYQAIYV-DTPGLHIE 85 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 R L + ++ V + I ++D I + D +++ + + VVLA+NK Sbjct: 86 EKRAINRLMNRAASSAISDV---DLIIFVVDG-IHWNADDEMVLNKLRASKAPVVLAINK 141 Query: 324 WDMVSDKLNLL 334 D + +K LL Sbjct: 142 IDNIKNKDELL 152 >gi|319956465|ref|YP_004167728.1| GTP-binding protein era [Nitratifractor salsuginis DSM 16511] gi|319418869|gb|ADV45979.1| GTP-binding protein Era [Nitratifractor salsuginis DSM 16511] Length = 302 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 54/175 (30%), Positives = 85/175 (48%), Gaps = 17/175 (9%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PN GKSTL N LV +K+A+V TR R+ + + VDT G+ + K Sbjct: 16 VAVVGRPNAGKSTLLNHLVGEKLAMVSKKAQATRKRMNIIVMHDNAQIIFVDTPGLHE-K 74 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD-- 122 + K M ++ AI +A LILF+ Y+ + + KK P I+V +K+D Sbjct: 75 EKLLNKFMLEEALKAIGDADLILFIAPVSDSTAEYERFLKR-IEKKKTPHIVVLSKIDQA 133 Query: 123 ------TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHP 171 ++IA+ Y+ + F ++ S + ++G EL I K P HP Sbjct: 134 SNEKILSKIAE---YQKFQEHFVALIPYSVKKNIGREELLDEIVK----HLPEHP 181 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 39/139 (28%), Positives = 73/139 (52%), Gaps = 13/139 (9%) Query: 198 KNISKPLR---IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIE 254 +N +P++ +AVVGRPN GKSTL+N L+G + ++ TR ++I N I Sbjct: 5 QNHEQPMKAGFVAVVGRPNAGKSTLLNHLVGEKLAMVSKKAQATRKRMNIIVMHDNAQII 64 Query: 255 IFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLL---DATIPFEKQDLRIVDSVF 311 DT G+ + ++ L + ++++++++ + + + D+T +E+ RI Sbjct: 65 FVDTPGLHEKEKL---LNKFMLEEALKAIGDADLILFIAPVSDSTAEYERFLKRIEKK-- 119 Query: 312 NTGHAVVLALNKWDMVSDK 330 T H VVL+ K D S++ Sbjct: 120 KTPHIVVLS--KIDQASNE 136 >gi|241895551|ref|ZP_04782847.1| GTP-binding protein Era [Weissella paramesenteroides ATCC 33313] gi|241871129|gb|EER74880.1| GTP-binding protein Era [Weissella paramesenteroides ATCC 33313] Length = 302 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 51/155 (32%), Positives = 78/155 (50%), Gaps = 5/155 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTL N+++ +K+A++ TR+++ G N +DT GI Sbjct: 11 IALVGRPNVGKSTLLNKMIGEKIAIMSPKAQTTRNKIQGIYTTNEGQMIFMDTPGIHKPH 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD-- 122 N S+ M A+ E+ ++ L+++ D I L++ N P+ ++ NK+D Sbjct: 71 N-SLGDFMVKTAMSALRESDMVWLLVNADQERGVGDDFIIKRLKESNTPVYLIINKVDLI 129 Query: 123 TRIAQRNFYEIYS--LDFKEIVEISAEHDLGTSEL 155 R N YS +DF EI ISA G EL Sbjct: 130 NRAEVLNQIADYSAQMDFAEIFPISALTGEGVPEL 164 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 49/170 (28%), Positives = 84/170 (49%), Gaps = 12/170 (7%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA+VGRPNVGKSTL+N+++G + ++ TR+ + + + DT G+ KP Sbjct: 11 IALVGRPNVGKSTLLNKMIGEKIAIMSPKAQTTRNKIQGIYTTNEGQMIFMDTPGIHKPH 70 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 SL VK +M ++R + +L++A D I+ + + V L +NK D Sbjct: 71 N---SLGDFMVKTAMSALRESDMVWLLVNADQERGVGDDFIIKRLKESNTPVYLIINKVD 127 Query: 326 MV--SDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 ++ ++ LN + D Q+ I IS TGEG+ +L+ ++ Sbjct: 128 LINRAEVLNQIADYSA-------QMDFAEIFPISALTGEGVPELLAFTMD 170 >gi|123969012|ref|YP_001009870.1| GTP-binding protein Era [Prochlorococcus marinus str. AS9601] gi|123199122|gb|ABM70763.1| GTP-binding protein Era [Prochlorococcus marinus str. AS9601] Length = 303 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 49/166 (29%), Positives = 84/166 (50%), Gaps = 13/166 (7%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP- 264 + ++GRPNVGKSTLIN+L+G +T + TR+ + K+ I DT G+ KP Sbjct: 9 VTLLGRPNVGKSTLINKLIGEKITITSPIAQTTRNKLKGILTTKDGQIIFVDTPGVHKPH 68 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 R+ E L VK + ++ + I ++D++ + D I++ + ++ALNKW Sbjct: 69 HRLGEIL----VKNAKSAINGVDMVIFVIDSSEEPGRGDEYILNFLIANKTEFIVALNKW 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYIN--TISGRTGEGLDDLM 368 D+V+ ++ R + + IY N +S GEG +L+ Sbjct: 125 DLVN------KEFRNLRLDQYRRFFGIYRNFQVVSASQGEGCSELI 164 Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 47/160 (29%), Positives = 73/160 (45%), Gaps = 14/160 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + ++G PNVGKSTL N+L+ +K+ + TR++L G VDT G+ Sbjct: 9 VTLLGRPNVGKSTLINKLIGEKITITSPIAQTTRNKLKGILTTKDGQIIFVDTPGVHK-P 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD-- 122 + + + + + AIN +++F+IDS D I +FL I+ NK D Sbjct: 68 HHRLGEILVKNAKSAINGVDMVIFVIDSSEEPGRGDEYILNFLIANKTEFIVALNKWDLV 127 Query: 123 ------TRIAQ-RNFYEIYSLDFKEIVEISAEHDLGTSEL 155 R+ Q R F+ IY + +SA G SEL Sbjct: 128 NKEFRNLRLDQYRRFFGIY----RNFQVVSASQGEGCSEL 163 >gi|315168440|gb|EFU12457.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX1341] Length = 465 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 46/160 (28%), Positives = 87/160 (54%), Gaps = 7/160 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L++++ A+V + G TRD + + GV ++DTAGI + ++ Sbjct: 231 AIIGPPNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETED 290 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD--T 123 + + +++ A+ ++ LIL +++ +T D + K + +I+ NKMD T Sbjct: 291 I-VERIGVERSRKALADSDLILLVLNQSEELTEEDRQLLE--ATKGLKRVILLNKMDLPT 347 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 ++ E+ +EI+ +S + G +L + I +F Sbjct: 348 KLDPNELQELVP--AEEILSVSVLSNTGLDQLEAKIADLF 385 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 37/129 (28%), Positives = 74/129 (57%), Gaps = 5/129 (3%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L A++G PNVGKS+L+N LL + + +G TRD + N + P+++ D Sbjct: 222 KILREGLSTAIIGPPNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLID 281 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ I E + V++S +++ + +++L+ + ++D +++++ G Sbjct: 282 TAGIRETEDIVERI---GVERSRKALADSDLILLVLNQSEELTEEDRQLLEA--TKGLKR 336 Query: 318 VLALNKWDM 326 V+ LNK D+ Sbjct: 337 VILLNKMDL 345 >gi|209517221|ref|ZP_03266066.1| GTP-binding protein Era [Burkholderia sp. H160] gi|209502357|gb|EEA02368.1| GTP-binding protein Era [Burkholderia sp. H160] Length = 287 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 48/170 (28%), Positives = 84/170 (49%), Gaps = 9/170 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N LV +K+++ TR R+ G + + VDT G Sbjct: 2 VAIVGRPNVGKSTLMNALVGQKVSITSRKAQTTRHRITGINTLEDAQYIFVDTPGFQTKH 61 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + ++ + +N + ILF+I++ P D + + K +P ++++NK+D R Sbjct: 62 SGALNRSLNRAVTSTLTSVDAILFVIEA-GRFGPDDQKVLDLIPAK-VPTLLIANKLD-R 118 Query: 125 IAQRN----FYEIYSL--DFKEIVEISAEHDLGTSELHSVIFKIFKQKYP 168 ++ ++ F + S +F EIV +SA++ L + I + P Sbjct: 119 VSDKDSLFPFMQQMSTLREFNEIVPLSAKNTDDIKRLMATIKPFLPEGEP 168 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 37/129 (28%), Positives = 69/129 (53%), Gaps = 4/129 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VGRPNVGKSTL+N L+G +T ++ TR ++ ++ DT G + + Sbjct: 2 VAIVGRPNVGKSTLMNALVGQKVSITSRKAQTTRHRITGINTLEDAQYIFVDTPGFQ--T 59 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + + +L +++ +++ S T I+ + F D +++D + +++A NK D Sbjct: 60 KHSGAL-NRSLNRAVTSTLTSVDAILFVIEAGRFGPDDQKVLDLIPAKVPTLLIA-NKLD 117 Query: 326 MVSDKLNLL 334 VSDK +L Sbjct: 118 RVSDKDSLF 126 >gi|225077529|ref|ZP_03720728.1| hypothetical protein NEIFLAOT_02592 [Neisseria flavescens NRL30031/H210] gi|284800154|ref|ZP_06390566.1| tRNA modification GTPase TrmE [Neisseria subflava NJ9703] gi|224951149|gb|EEG32358.1| hypothetical protein NEIFLAOT_02592 [Neisseria flavescens NRL30031/H210] gi|284795881|gb|EFC51228.1| tRNA modification GTPase TrmE [Neisseria subflava NJ9703] Length = 335 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 38/104 (36%), Positives = 64/104 (61%), Gaps = 3/104 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + +VGAPNVGKS+L N L +A+V + G TRD + Q ++GV +I+DTAG+ + Sbjct: 220 VVLVGAPNVGKSSLLNALAGDDIAIVTDIAGTTRDTVREQITLDGVPVHIIDTAGLRETD 279 Query: 65 NCSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFL 107 + + +Q+ +++ A++EA + L LID + G+ AI + L Sbjct: 280 D--VVEQIGIERSRKAVSEADVALILIDPREGVNAKTQAILNSL 321 Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 30/91 (32%), Positives = 53/91 (58%), Gaps = 3/91 (3%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 + + +VG PNVGKS+L+N L G + + +G TRD+V P+ I DTAG+R+ Sbjct: 218 MNVVLVGAPNVGKSSLLNALAGDDIAIVTDIAGTTRDTVREQITLDGVPVHIIDTAGLRE 277 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLD 294 + +EQ +++S ++V + ++L+D Sbjct: 278 TDDV---VEQIGIERSRKAVSEADVALILID 305 >gi|329908683|ref|ZP_08274923.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Oxalobacteraceae bacterium IMCC9480] gi|327546633|gb|EGF31597.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Oxalobacteraceae bacterium IMCC9480] Length = 433 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 44/120 (36%), Positives = 69/120 (57%), Gaps = 3/120 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA-DG 63 I + G PNVGKS+L N L +A+V G TRD++ I G+ NI+DTAGI D Sbjct: 198 IVLAGQPNVGKSSLLNALAGADIAIVTPIAGTTRDKVTETIQIEGIPLNIIDTAGIRYDA 257 Query: 64 KNCSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + +++ ++T A+ +A +I+ L+D+ G T D +I + NIP++ V NK+D Sbjct: 258 EAIDDVERIGIERTWAAVAQADVIIHLLDACRGPTLADESIVARF-PANIPVMRVWNKID 316 Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 32/92 (34%), Positives = 54/92 (58%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 L I + G+PNVGKS+L+N L G + + +G TRD V+ + + P+ I DTAG+R Sbjct: 196 LNIVLAGQPNVGKSSLLNALAGADIAIVTPIAGTTRDKVTETIQIEGIPLNIIDTAGIRY 255 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDA 295 + + +E+ ++++ +V + I LLDA Sbjct: 256 DAEAIDDVERIGIERTWAAVAQADVIIHLLDA 287 >gi|154688207|ref|YP_001423368.1| tRNA modification GTPase TrmE [Bacillus amyloliquefaciens FZB42] gi|308175809|ref|YP_003922514.1| tRNA modification GTPase TrmE [Bacillus amyloliquefaciens DSM 7] gi|205829057|sp|A7ZAW1|MNME_BACA2 RecName: Full=tRNA modification GTPase mnmE gi|154354058|gb|ABS76137.1| TrmE [Bacillus amyloliquefaciens FZB42] gi|307608673|emb|CBI45044.1| tRNA modification GTPase TrmE [Bacillus amyloliquefaciens DSM 7] gi|328555785|gb|AEB26277.1| tRNA modification GTPase TrmE [Bacillus amyloliquefaciens TA208] gi|328914174|gb|AEB65770.1| tRNA modification GTPase mnmE [Bacillus amyloliquefaciens LL3] Length = 459 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 37/129 (28%), Positives = 74/129 (57%), Gaps = 5/129 (3%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L ++GRPNVGKS+L+N L+ + + G TRD + N + P+ + D Sbjct: 216 KILREGLSTVIIGRPNVGKSSLLNSLVHETKAIVTDIPGTTRDVIEEYVNVRGVPLRLVD 275 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ I E + V++S Q ++ + +++L+ + ++D+++ ++V G V Sbjct: 276 TAGIRETEDIVERI---GVERSRQVLKEADLILLVLNHSEELSEEDVKLFEAV--EGMDV 330 Query: 318 VLALNKWDM 326 ++ +NK D+ Sbjct: 331 IVIMNKTDL 339 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 38/116 (32%), Positives = 66/116 (56%), Gaps = 3/116 (2%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 I+G PNVGKS+L N LV + A+V + PG TRD + + GV +VDTAGI + ++ Sbjct: 226 IIGRPNVGKSSLLNSLVHETKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDI 285 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + + +++ + EA LIL +++ ++ D + F + + +I++ NK D Sbjct: 286 -VERIGVERSRQVLKEADLILLVLNHSEELSEED--VKLFEAVEGMDVIVIMNKTD 338 >gi|308802255|ref|XP_003078441.1| COG0486: Predicted GTPase (ISS) [Ostreococcus tauri] gi|116056893|emb|CAL53182.1| COG0486: Predicted GTPase (ISS) [Ostreococcus tauri] Length = 496 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 50/176 (28%), Positives = 89/176 (50%), Gaps = 8/176 (4%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 I + +R+A+VG PNVGKS+++N L G + + ++G TRD + IS + + + DTA Sbjct: 243 IRRGVRVAIVGAPNVGKSSMLNALAGRDAAIVSPRAGTTRDVLEISLELNGYKVIVSDTA 302 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFN-TGHAVV 318 G+R+ + +E+ V ++++ R + + L DA+ R S + TG V+ Sbjct: 303 GIRETD---DDVEKMGVARALERARDADVLVALADASSDASSDAARDALSTVDVTGKDVI 359 Query: 319 LALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEI 374 NK D++ D R I + GD + +S R G G+DD + ++ + Sbjct: 360 TVWNKSDVIDAARARELDARVDDITR--RGGDARV--VSARDGRGVDDFIATLARV 411 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 27/56 (48%), Positives = 34/56 (60%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 +AIVGAPNVGKS++ N L + A+V G TRD L +NG + DTAGI Sbjct: 249 VAIVGAPNVGKSSMLNALAGRDAAIVSPRAGTTRDVLEISLELNGYKVIVSDTAGI 304 >gi|77166532|ref|YP_345057.1| tRNA modification GTPase TrmE [Nitrosococcus oceani ATCC 19707] gi|123593187|sp|Q3J6L9|MNME_NITOC RecName: Full=tRNA modification GTPase mnmE gi|76884846|gb|ABA59527.1| tRNA modification GTPase trmE [Nitrosococcus oceani ATCC 19707] Length = 458 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 40/118 (33%), Positives = 66/118 (55%), Gaps = 2/118 (1%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + + G PNVGKS+L NRL + A+V + PG TRD L I+G+ ++ DTAG+ + K Sbjct: 227 VVLAGRPNVGKSSLHNRLAGFEAAIVTDVPGTTRDLLRENITIDGLPIHLSDTAGLHNSK 286 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + + M E I+ H +L + D ++G+T + AI L ++ ++ NK+D Sbjct: 287 DTIEQEGMRRTREELIHADH-VLLVADDQSGLTEAEQAILDEL-PDDVTYTLIFNKID 342 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/166 (24%), Positives = 79/166 (47%), Gaps = 16/166 (9%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + +R+ + GRPNVGKS+L NRL G+ + G TRD + + PI + DTA Sbjct: 221 LREGVRVVLAGRPNVGKSSLHNRLAGFEAAIVTDVPGTTRDLLRENITIDGLPIHLSDTA 280 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+ +++EQ+ ++++ + + + +++ D + + I+D + + L Sbjct: 281 GLHNSK---DTIEQEGMRRTREELIHADHVLLVADDQSGLTEAEQAILDELPDD-VTYTL 336 Query: 320 ALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLD 365 NK D+ ++L+ A++ +S TG G+D Sbjct: 337 IFNKIDLSGAPAGRWEELQGIALR------------LSALTGAGMD 370 >gi|52673270|emb|CAH56508.1| putative tRNA modification GTPase trmE [Bacillus amyloliquefaciens FZB42] Length = 462 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 37/129 (28%), Positives = 74/129 (57%), Gaps = 5/129 (3%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L ++GRPNVGKS+L+N L+ + + G TRD + N + P+ + D Sbjct: 219 KILREGLSTVIIGRPNVGKSSLLNSLVHETKAIVTDIPGTTRDVIEEYVNVRGVPLRLVD 278 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ I E + V++S Q ++ + +++L+ + ++D+++ ++V G V Sbjct: 279 TAGIRETEDIVERI---GVERSRQVLKEADLILLVLNHSEELSEEDVKLFEAV--EGMDV 333 Query: 318 VLALNKWDM 326 ++ +NK D+ Sbjct: 334 IVIMNKTDL 342 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 38/116 (32%), Positives = 66/116 (56%), Gaps = 3/116 (2%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 I+G PNVGKS+L N LV + A+V + PG TRD + + GV +VDTAGI + ++ Sbjct: 229 IIGRPNVGKSSLLNSLVHETKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDI 288 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + + +++ + EA LIL +++ ++ D + F + + +I++ NK D Sbjct: 289 -VERIGVERSRQVLKEADLILLVLNHSEELSEED--VKLFEAVEGMDVIVIMNKTD 341 >gi|320170767|gb|EFW47666.1| tRNA modification GTPase TrmE [Capsaspora owczarzaki ATCC 30864] Length = 585 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 51/195 (26%), Positives = 96/195 (49%), Gaps = 18/195 (9%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VG PNVGKS+L+N + + + +G TRD + + + +P+ + DTAGMR Sbjct: 354 VAIVGAPNVGKSSLLNIMSQRPTAIVSATAGTTRDILEVPLDIGGYPLLLCDTAGMRDSD 413 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 E +EQ+ +K++ C+ + + DA+ +DSV + +L L + Sbjct: 414 ---EEIEQEGIKRARARAHACDLRLCVFDAS---------KLDSVDPS----ILQLVQPG 457 Query: 326 MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSV-LEINKLWKTRI-T 383 M +N + + + P+I +S ++GEG+ L+ + LE+ + ++ Sbjct: 458 MSLPIINKIDTVEASQLVIPPEILAAKPVFLSCKSGEGVSVLLERLTLELKQRCESETGE 517 Query: 384 TSYLNSWLQKTQLQN 398 T+ + W +TQLQ Sbjct: 518 TALITQWRHRTQLQT 532 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 40/121 (33%), Positives = 63/121 (52%), Gaps = 6/121 (4%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 ++AIVGAPNVGKS+L N + ++ A+V G TRD L I G + DTAG+ D Sbjct: 353 SVAIVGAPNVGKSSLLNIMSQRPTAIVSATAGTTRDILEVPLDIGGYPLLLCDTAGMRDS 412 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKK-NIPIIIVSNKMD 122 I ++ + + L L + D+ + + D +I ++ ++PII NK+D Sbjct: 413 DE-EIEQEGIKRARARAHACDLRLCVFDA-SKLDSVDPSILQLVQPGMSLPII---NKID 467 Query: 123 T 123 T Sbjct: 468 T 468 >gi|315634821|ref|ZP_07890103.1| GTP-binding protein Era [Aggregatibacter segnis ATCC 33393] gi|315476373|gb|EFU67123.1| GTP-binding protein Era [Aggregatibacter segnis ATCC 33393] Length = 301 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 49/148 (33%), Positives = 76/148 (51%), Gaps = 6/148 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N+++ +K+++ TR R+ G VDT G+ + Sbjct: 12 IAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIKTEGPYQEIYVDTPGLHIEE 71 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN AI + L++F++D D + + LRK +P+++ NK+D Sbjct: 72 KRAINRLMNRAASSAITDVDLVIFVVDG-THWNDDDEMVLNKLRKTKVPVVLAINKIDNI 130 Query: 125 IAQRNFY----EIYS-LDFKEIVEISAE 147 + + EI S F +IV ISAE Sbjct: 131 KNKDDLLPFITEISSKFTFTDIVPISAE 158 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 42/131 (32%), Positives = 70/131 (53%), Gaps = 7/131 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIF-DTAGMR-K 263 IA+VGRPNVGKSTL+N++LG +T ++ TR + + + EI+ DT G+ + Sbjct: 12 IAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRI-VGIKTEGPYQEIYVDTPGLHIE 70 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 R L + ++ V + I ++D T + D +++ + T VVLA+NK Sbjct: 71 EKRAINRLMNRAASSAITDV---DLVIFVVDGT-HWNDDDEMVLNKLRKTKVPVVLAINK 126 Query: 324 WDMVSDKLNLL 334 D + +K +LL Sbjct: 127 IDNIKNKDDLL 137 >gi|229824094|ref|ZP_04450163.1| hypothetical protein GCWU000282_01398 [Catonella morbi ATCC 51271] gi|229786448|gb|EEP22562.1| hypothetical protein GCWU000282_01398 [Catonella morbi ATCC 51271] Length = 301 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 65/118 (55%), Gaps = 1/118 (0%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKSTL NR V +K+A++ + TR+R+ G + +DT GI K Sbjct: 11 VAIIGRPNVGKSTLLNRFVGQKIAIMSDKAQTTRNRIQGVLTTDQAQIVFIDTPGIHKPK 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + ++ M + A+ +LF++++ + P D I ++ +P+ +V NK+D Sbjct: 71 H-ALGDFMVNTAYSALKGVDAVLFVVNAAEKMGPGDRLIMERIQNVKVPVFLVINKID 127 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 60/122 (49%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKSTL+NR +G + ++ TR+ + I DT G+ KP Sbjct: 11 VAIIGRPNVGKSTLLNRFVGQKIAIMSDKAQTTRNRIQGVLTTDQAQIVFIDTPGIHKPK 70 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +L V + +++ + + +++A D I++ + N V L +NK D Sbjct: 71 H---ALGDFMVNTAYSALKGVDAVLFVVNAAEKMGPGDRLIMERIQNVKVPVFLVINKID 127 Query: 326 MV 327 +V Sbjct: 128 LV 129 >gi|320547277|ref|ZP_08041569.1| GTP-binding protein Era [Streptococcus equinus ATCC 9812] gi|320448081|gb|EFW88832.1| GTP-binding protein Era [Streptococcus equinus ATCC 9812] Length = 298 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 45/146 (30%), Positives = 74/146 (50%), Gaps = 5/146 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKST N ++ +K+A++ + TR+++ G + +DT GI K Sbjct: 7 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDTEQIVFIDTPGIHKPK 66 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 ++ M + + E +LF++ + D I L+ IP+I+V NK+D Sbjct: 67 -TALGDFMVESAYSTLREVETVLFMVPADEKRGKGDDMIIERLKAAKIPVILVINKIDKV 125 Query: 125 IAQRNFYEI----YSLDFKEIVEISA 146 + +I +DFKEIV ISA Sbjct: 126 HPDQLLEQIDDFRSQMDFKEIVPISA 151 Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 38/137 (27%), Positives = 67/137 (48%), Gaps = 5/137 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKST +N ++G + ++ TR+ + + I DT G+ KP Sbjct: 7 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDTEQIVFIDTPGIHKPK 66 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +L V+ + ++R ET + ++ A K D I++ + V+L +NK D Sbjct: 67 T---ALGDFMVESAYSTLREVETVLFMVPADEKRGKGDDMIIERLKAAKIPVILVINKID 123 Query: 326 MV--SDKLNLLQDLRTK 340 V L + D R++ Sbjct: 124 KVHPDQLLEQIDDFRSQ 140 >gi|29377753|ref|NP_816907.1| tRNA modification GTPase TrmE [Enterococcus faecalis V583] gi|227555662|ref|ZP_03985709.1| tRNA modification GTPase TrmE [Enterococcus faecalis HH22] gi|257418862|ref|ZP_05595856.1| tRNA modification GTPase [Enterococcus faecalis T11] gi|46577423|sp|Q820T0|MNME_ENTFA RecName: Full=tRNA modification GTPase mnmE gi|29345221|gb|AAO82977.1| tRNA modification GTPase TrmE [Enterococcus faecalis V583] gi|227175215|gb|EEI56187.1| tRNA modification GTPase TrmE [Enterococcus faecalis HH22] gi|257160690|gb|EEU90650.1| tRNA modification GTPase [Enterococcus faecalis T11] gi|315576168|gb|EFU88359.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0309B] gi|315582978|gb|EFU95169.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0309A] Length = 465 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 46/160 (28%), Positives = 87/160 (54%), Gaps = 7/160 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L++++ A+V + G TRD + + GV ++DTAGI + ++ Sbjct: 231 AIIGRPNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETED 290 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD--T 123 + + +++ A+ ++ LIL +++ +T D + K + +I+ NKMD T Sbjct: 291 I-VERIGVERSRKALADSDLILLVLNQSEELTEEDRQLLEA--TKGLKRVILLNKMDLPT 347 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 ++ E+ +EI+ +S + G +L + I +F Sbjct: 348 KLDPNELQELVP--AEEILSVSVLSNTGLDQLEAKIADLF 385 Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 38/129 (29%), Positives = 75/129 (58%), Gaps = 5/129 (3%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L A++GRPNVGKS+L+N LL + + +G TRD + N + P+++ D Sbjct: 222 KILREGLSTAIIGRPNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLID 281 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ I E + V++S +++ + +++L+ + ++D +++++ G Sbjct: 282 TAGIRETEDIVERI---GVERSRKALADSDLILLVLNQSEELTEEDRQLLEA--TKGLKR 336 Query: 318 VLALNKWDM 326 V+ LNK D+ Sbjct: 337 VILLNKMDL 345 >gi|301100808|ref|XP_002899493.1| conserved hypothetical protein [Phytophthora infestans T30-4] gi|262103801|gb|EEY61853.1| conserved hypothetical protein [Phytophthora infestans T30-4] Length = 877 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 53/204 (25%), Positives = 98/204 (48%), Gaps = 29/204 (14%) Query: 202 KPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGM 261 K L +AV+GRPN GKS+++NRLL + TRD + + + + +DT G+ Sbjct: 218 KALDLAVIGRPNAGKSSIMNRLLSVTVSAVSPKYNTTRDRILGIFTEGDVQLSFYDTPGL 277 Query: 262 RKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV---- 317 KP E + Q V + ++++ + +++++D+ ++ L+ ++ V T V Sbjct: 278 IKPKESHEYV-QTLVTAAAETLQGVDLSMLVVDSVKRLDESALQALEKVLTTSAQVCSPT 336 Query: 318 VLALNKWDMVSDKLNLLQDLRTK---------------------AIKNLPQIGDIYINTI 356 +L +NK+D+V + L D++TK +I L IGD I + Sbjct: 337 MLVMNKYDLVGKREQLNLDMKTKELSQMIEEIYSKHYDAEGSSLSIDPLAYIGDNSIK-V 395 Query: 357 SGRTGEGLDDLMVSVLE--INKLW 378 S G G+D L ++L +++ W Sbjct: 396 SATKGYGMDTLRKTLLSLAVDRPW 419 Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust. Identities = 41/169 (24%), Positives = 75/169 (44%), Gaps = 23/169 (13%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A++G PN GKS++ NRL+ ++ V TRDR+ G V + DT G+ K Sbjct: 222 LAVIGRPNAGKSSIMNRLLSVTVSAVSPKYNTTRDRILGIFTEGDVQLSFYDTPGLIKPK 281 Query: 65 NC-SIAKQMNDQTELAINEAHLILFLIDS-----KAGITPYDHAITSFLRKKNIPIIIVS 118 + + + L + ++DS ++ + + +T+ + + P ++V Sbjct: 282 ESHEYVQTLVTAAAETLQGVDLSMLVVDSVKRLDESALQALEKVLTTSAQVCS-PTMLVM 340 Query: 119 NKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKY 167 NK D + +R E +LD K T EL +I +I+ + Y Sbjct: 341 NKYDL-VGKR---EQLNLDMK------------TKELSQMIEEIYSKHY 373 >gi|148656306|ref|YP_001276511.1| GTP-binding protein Era [Roseiflexus sp. RS-1] gi|148568416|gb|ABQ90561.1| GTP-binding protein Era [Roseiflexus sp. RS-1] Length = 451 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 52/181 (28%), Positives = 83/181 (45%), Gaps = 4/181 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTL N L+ +K+A+V P TR + G VDT GI + + Sbjct: 166 VALVGRPNVGKSTLLNALLGQKVAIVSPKPQTTRTAIRGILSRPDAQIVFVDTPGIHEPR 225 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD-- 122 N + M Q AI +A ++ ++D D I + +RK ++V NK+D Sbjct: 226 N-RLGAYMVKQARRAIPDADVVCMVVDISRPPGSLDERIAALVRKAQARRMLVLNKIDLP 284 Query: 123 TRIAQRNFYEIYSLDFKEI-VEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 TR + +L ++ V +SA G L I ++ + P +P + + Sbjct: 285 TRSGNEHLQAYRALAPWDMEVAVSALRGQGLDALVDEIVRLLPEGPPLYPEGQVTDQSER 344 Query: 182 E 182 E Sbjct: 345 E 345 Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 52/204 (25%), Positives = 98/204 (48%), Gaps = 19/204 (9%) Query: 179 KRNEESPKENITSEGKSSVKNISKPLR---------IAVVGRPNVGKSTLINRLLGYNRL 229 +R+EE +++ E +++ ++P+ +A+VGRPNVGKSTL+N LLG Sbjct: 132 QRDEE--RQDDGEEPATALPPATRPMMPEGPHRSGFVALVGRPNVGKSTLLNALLGQKVA 189 Query: 230 LTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETT 289 + + TR ++ + + I DT G+ +P L VK++ +++ + Sbjct: 190 IVSPKPQTTRTAIRGILSRPDAQIVFVDTPGIHEPRN---RLGAYMVKQARRAIPDADVV 246 Query: 290 IVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLN-LLQDLRTKAIKNLPQI 348 +++D + P D RI V +L LNK D+ + N LQ R A ++ Sbjct: 247 CMVVDISRPPGSLDERIAALVRKAQARRMLVLNKIDLPTRSGNEHLQAYRALAPWDM--- 303 Query: 349 GDIYINTISGRTGEGLDDLMVSVL 372 ++ ++ + G+ + L D +V +L Sbjct: 304 -EVAVSALRGQGLDALVDEIVRLL 326 >gi|83950775|ref|ZP_00959508.1| tRNA modification GTPase [Roseovarius nubinhibens ISM] gi|83838674|gb|EAP77970.1| tRNA modification GTPase [Roseovarius nubinhibens ISM] Length = 391 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 32/102 (31%), Positives = 55/102 (53%), Gaps = 3/102 (2%) Query: 193 GKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHP 252 G ++ + I +A+VG PNVGKSTL+N L G + +T +G TRD + + + P Sbjct: 166 GVAAAERIRTGFEVAIVGAPNVGKSTLLNGLAGRDAAITSDVAGTTRDVIEVRMDVAGLP 225 Query: 253 IEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLD 294 + DTAG+R+ + ES+ + ++ + + + LLD Sbjct: 226 VTFLDTAGLRETEDVVESV---GIARAKERAAQADLRVFLLD 264 Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 1/89 (1%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + +AIVGAPNVGKSTL N L + A+ + G TRD + + + G+ +DTAG+ + Sbjct: 177 FEVAIVGAPNVGKSTLLNGLAGRDAAITSDVAGTTRDVIEVRMDVAGLPVTFLDTAGLRE 236 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLID 91 ++ + + E A +A L +FL+D Sbjct: 237 TEDVVESVGIARAKERA-AQADLRVFLLD 264 >gi|322387708|ref|ZP_08061317.1| GTP-binding protein Era [Streptococcus infantis ATCC 700779] gi|321141575|gb|EFX37071.1| GTP-binding protein Era [Streptococcus infantis ATCC 700779] Length = 311 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 49/179 (27%), Positives = 89/179 (49%), Gaps = 7/179 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKST N ++ +K+A++ + TR+++ G + +DT GI K Sbjct: 20 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 79 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM--- 121 ++ M + + E +LF++ + D I L+ +P+I+V NK+ Sbjct: 80 -TALGDFMVESAYSTLREVDTVLFMVPADEPRGKGDDMIIERLKAAKVPVILVVNKIDKV 138 Query: 122 --DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 D +AQ + + +DFKEIV ISA S L ++ + ++ + P + I ++ Sbjct: 139 HPDQLLAQIDDFR-NQMDFKEIVPISALQGNNVSHLIDILSENLEEGFQYFPSDQITDH 196 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKST +N ++G + ++ TR+ + + I DT G+ KP Sbjct: 20 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 79 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +L V+ + ++R +T + ++ A P K D I++ + V+L +NK D Sbjct: 80 T---ALGDFMVESAYSTLREVDTVLFMVPADEPRGKGDDMIIERLKAAKVPVILVVNKID 136 Query: 326 MV 327 V Sbjct: 137 KV 138 >gi|317132159|ref|YP_004091473.1| GTP-binding protein Era [Ethanoligenens harbinense YUAN-3] gi|315470138|gb|ADU26742.1| GTP-binding protein Era [Ethanoligenens harbinense YUAN-3] Length = 296 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 49/178 (27%), Positives = 86/178 (48%), Gaps = 11/178 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKSTL N ++ +K+A+V P TR+++ G + +DT G K Sbjct: 9 VAIIGRPNVGKSTLLNAILGEKIAIVSPKPQTTRNKITGVYTKDDTQLIFLDTPGWHQPK 68 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRK--KNIPIIIVSNKMD 122 + M + + + +LF+I+ + P A T L K K +P+++V NK+D Sbjct: 69 T-KLGNYMAKSVDNTLTDVDAVLFVIEPREAPRP---AETELLGKLGKQVPVLLVINKID 124 Query: 123 TRIAQRNFYEIYS-----LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 + + + DF +V ISAE + G L + + + + +P +M+ Sbjct: 125 ILADKSALMGVIAHWSKLRDFTAVVPISAEKNDGVDALLAELISLMPEGPQYYPDDMV 182 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 43/170 (25%), Positives = 79/170 (46%), Gaps = 10/170 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKSTL+N +LG + + TR+ ++ + + + DT G +P Sbjct: 9 VAIIGRPNVGKSTLLNAILGEKIAIVSPKPQTTRNKITGVYTKDDTQLIFLDTPGWHQPK 68 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + K+V ++ V I +A P E + L V+L +NK D Sbjct: 69 TKLGNYMAKSVDNTLTDVDAVLFVIEPREAPRPAETELL----GKLGKQVPVLLVINKID 124 Query: 326 MVSDKLNLLQDLRTKAIKNLPQIGDI-YINTISGRTGEGLDDLMVSVLEI 374 +++DK L+ I + ++ D + IS +G+D L+ ++ + Sbjct: 125 ILADKSALM-----GVIAHWSKLRDFTAVVPISAEKNDGVDALLAELISL 169 >gi|257417403|ref|ZP_05594397.1| tRNA modification GTPase [Enterococcus faecalis AR01/DG] gi|257159231|gb|EEU89191.1| tRNA modification GTPase [Enterococcus faecalis ARO1/DG] Length = 465 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 46/160 (28%), Positives = 87/160 (54%), Gaps = 7/160 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L++++ A+V + G TRD + + GV ++DTAGI + ++ Sbjct: 231 AIIGRPNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETED 290 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD--T 123 + + +++ A+ ++ LIL +++ +T D + K + +I+ NKMD T Sbjct: 291 I-VERIGVERSRKALADSDLILLVLNQSEKLTEEDRQLLEA--TKGLKRVILLNKMDLPT 347 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 ++ E+ +EI+ +S + G +L + I +F Sbjct: 348 KLDPNELQELVP--AEEILSVSVLSNTGLDQLEAKIADLF 385 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 38/129 (29%), Positives = 75/129 (58%), Gaps = 5/129 (3%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L A++GRPNVGKS+L+N LL + + +G TRD + N + P+++ D Sbjct: 222 KILREGLSTAIIGRPNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLID 281 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ I E + V++S +++ + +++L+ + ++D +++++ G Sbjct: 282 TAGIRETEDIVERI---GVERSRKALADSDLILLVLNQSEKLTEEDRQLLEA--TKGLKR 336 Query: 318 VLALNKWDM 326 V+ LNK D+ Sbjct: 337 VILLNKMDL 345 >gi|229547152|ref|ZP_04435877.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX1322] gi|255971528|ref|ZP_05422114.1| tRNA modification GTPase [Enterococcus faecalis T1] gi|255974478|ref|ZP_05425064.1| tRNA modification GTPase [Enterococcus faecalis T2] gi|256761833|ref|ZP_05502413.1| tRNA modification GTPase [Enterococcus faecalis T3] gi|256854960|ref|ZP_05560321.1| tRNA modification GTPase mnmE [Enterococcus faecalis T8] gi|256957036|ref|ZP_05561207.1| tRNA modification GTPase [Enterococcus faecalis DS5] gi|256960899|ref|ZP_05565070.1| tRNA modification GTPase [Enterococcus faecalis Merz96] gi|256963961|ref|ZP_05568132.1| tRNA modification GTPase [Enterococcus faecalis HIP11704] gi|257078713|ref|ZP_05573074.1| tRNA modification GTPase [Enterococcus faecalis JH1] gi|257081326|ref|ZP_05575687.1| tRNA modification GTPase [Enterococcus faecalis E1Sol] gi|257083984|ref|ZP_05578345.1| tRNA modification GTPase [Enterococcus faecalis Fly1] gi|257087814|ref|ZP_05582175.1| tRNA modification GTPase [Enterococcus faecalis D6] gi|257088459|ref|ZP_05582820.1| tRNA modification GTPase [Enterococcus faecalis CH188] gi|257421323|ref|ZP_05598313.1| tRNA modification GTPase trmE [Enterococcus faecalis X98] gi|293384792|ref|ZP_06630639.1| tRNA modification GTPase TrmE [Enterococcus faecalis R712] gi|293388148|ref|ZP_06632672.1| tRNA modification GTPase TrmE [Enterococcus faecalis S613] gi|294781227|ref|ZP_06746574.1| tRNA modification GTPase TrmE [Enterococcus faecalis PC1.1] gi|300861676|ref|ZP_07107760.1| tRNA modification GTPase TrmE [Enterococcus faecalis TUSoD Ef11] gi|307268891|ref|ZP_07550256.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX4248] gi|307273989|ref|ZP_07555199.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0855] gi|307277334|ref|ZP_07558432.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX2134] gi|307284016|ref|ZP_07564186.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0860] gi|307286637|ref|ZP_07566727.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0109] gi|307296566|ref|ZP_07576387.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0411] gi|312901323|ref|ZP_07760604.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0470] gi|312902969|ref|ZP_07762158.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0635] gi|312908837|ref|ZP_07767776.1| tRNA modification GTPase TrmE [Enterococcus faecalis DAPTO 512] gi|312952943|ref|ZP_07771799.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0102] gi|312979521|ref|ZP_07791203.1| tRNA modification GTPase TrmE [Enterococcus faecalis DAPTO 516] gi|229307734|gb|EEN73721.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX1322] gi|255962546|gb|EET95022.1| tRNA modification GTPase [Enterococcus faecalis T1] gi|255967350|gb|EET97972.1| tRNA modification GTPase [Enterococcus faecalis T2] gi|256683084|gb|EEU22779.1| tRNA modification GTPase [Enterococcus faecalis T3] gi|256709473|gb|EEU24520.1| tRNA modification GTPase mnmE [Enterococcus faecalis T8] gi|256947532|gb|EEU64164.1| tRNA modification GTPase [Enterococcus faecalis DS5] gi|256951395|gb|EEU68027.1| tRNA modification GTPase [Enterococcus faecalis Merz96] gi|256954457|gb|EEU71089.1| tRNA modification GTPase [Enterococcus faecalis HIP11704] gi|256986743|gb|EEU74045.1| tRNA modification GTPase [Enterococcus faecalis JH1] gi|256989356|gb|EEU76658.1| tRNA modification GTPase [Enterococcus faecalis E1Sol] gi|256992014|gb|EEU79316.1| tRNA modification GTPase [Enterococcus faecalis Fly1] gi|256995844|gb|EEU83146.1| tRNA modification GTPase [Enterococcus faecalis D6] gi|256997271|gb|EEU83791.1| tRNA modification GTPase [Enterococcus faecalis CH188] gi|257163147|gb|EEU93107.1| tRNA modification GTPase trmE [Enterococcus faecalis X98] gi|291077923|gb|EFE15287.1| tRNA modification GTPase TrmE [Enterococcus faecalis R712] gi|291082456|gb|EFE19419.1| tRNA modification GTPase TrmE [Enterococcus faecalis S613] gi|294451690|gb|EFG20145.1| tRNA modification GTPase TrmE [Enterococcus faecalis PC1.1] gi|295112327|emb|CBL30964.1| tRNA modification GTPase trmE [Enterococcus sp. 7L76] gi|300849137|gb|EFK76890.1| tRNA modification GTPase TrmE [Enterococcus faecalis TUSoD Ef11] gi|306495993|gb|EFM65580.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0411] gi|306502266|gb|EFM71548.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0109] gi|306503387|gb|EFM72636.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0860] gi|306505968|gb|EFM75140.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX2134] gi|306509297|gb|EFM78357.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0855] gi|306514807|gb|EFM83357.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX4248] gi|310625275|gb|EFQ08558.1| tRNA modification GTPase TrmE [Enterococcus faecalis DAPTO 512] gi|310629084|gb|EFQ12367.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0102] gi|310633637|gb|EFQ16920.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0635] gi|311287703|gb|EFQ66259.1| tRNA modification GTPase TrmE [Enterococcus faecalis DAPTO 516] gi|311291556|gb|EFQ70112.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0470] gi|315026593|gb|EFT38525.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX2137] gi|315030087|gb|EFT42019.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX4000] gi|315033580|gb|EFT45512.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0017] gi|315036245|gb|EFT48177.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0027] gi|315143559|gb|EFT87575.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX2141] gi|315148303|gb|EFT92319.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX4244] gi|315151268|gb|EFT95284.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0012] gi|315152698|gb|EFT96714.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0031] gi|315155022|gb|EFT99038.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0043] gi|315158703|gb|EFU02720.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0312] gi|315163425|gb|EFU07442.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0645] gi|315165648|gb|EFU09665.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX1302] gi|315172073|gb|EFU16090.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX1342] gi|315174206|gb|EFU18223.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX1346] gi|315579747|gb|EFU91938.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0630] gi|327536410|gb|AEA95244.1| tRNA modification GTPase TrmE [Enterococcus faecalis OG1RF] gi|329577012|gb|EGG58487.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX1467] Length = 465 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 46/160 (28%), Positives = 87/160 (54%), Gaps = 7/160 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L++++ A+V + G TRD + + GV ++DTAGI + ++ Sbjct: 231 AIIGRPNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETED 290 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD--T 123 + + +++ A+ ++ LIL +++ +T D + K + +I+ NKMD T Sbjct: 291 I-VERIGVERSRKALADSDLILLVLNQSEELTEEDRQLLEA--TKGLKRVILLNKMDLPT 347 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 ++ E+ +EI+ +S + G +L + I +F Sbjct: 348 KLDPNELQELVP--AEEILSVSVLSNTGLDQLEAKIADLF 385 Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 38/129 (29%), Positives = 75/129 (58%), Gaps = 5/129 (3%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L A++GRPNVGKS+L+N LL + + +G TRD + N + P+++ D Sbjct: 222 KILREGLSTAIIGRPNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLID 281 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ I E + V++S +++ + +++L+ + ++D +++++ G Sbjct: 282 TAGIRETEDIVERI---GVERSRKALADSDLILLVLNQSEELTEEDRQLLEA--TKGLKR 336 Query: 318 VLALNKWDM 326 V+ LNK D+ Sbjct: 337 VILLNKMDL 345 >gi|46200176|ref|YP_005843.1| GTP-binding protein Era [Thermus thermophilus HB27] gi|55980089|ref|YP_143386.1| GTP-binding protein Era [Thermus thermophilus HB8] gi|81364712|sp|Q5SM23|ERA_THET8 RecName: Full=GTPase Era gi|56966801|pdb|1WF3|A Chain A, Crystal Structure Of Gtp-Binding Protein Tt1341 From Thermus Thermophilus Hb8 gi|46197804|gb|AAS82216.1| GTP-binding protein era [Thermus thermophilus HB27] gi|55771502|dbj|BAD69943.1| GTP-binding protein Era [Thermus thermophilus HB8] Length = 301 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 45/158 (28%), Positives = 81/158 (51%), Gaps = 16/158 (10%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N L+ K+A + P TR RL G VDT G+ Sbjct: 10 VAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPM 69 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRK--KNIPIIIVSNKMD 122 + ++ + M+ + A+ + + +++++D + TP D + L+ +PI++V NK+D Sbjct: 70 D-ALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLD 128 Query: 123 T----RIAQRNFYEIY---------SLDFKEIVEISAE 147 A + ++E+ +LD +++ E+ A+ Sbjct: 129 AAKYPEEAMKAYHELLPEAEPRMLSALDERQVAELKAD 166 Score = 41.2 bits (95), Expect = 0.32, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 30/59 (50%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP 264 +A+VG+PNVGKSTL+N LLG + TR + I DT G+ KP Sbjct: 10 VAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKP 68 >gi|146312694|ref|YP_001177768.1| GTP-binding protein Era [Enterobacter sp. 638] gi|189037648|sp|A4WDD7|ERA_ENT38 RecName: Full=GTPase Era gi|145319570|gb|ABP61717.1| GTP-binding protein Era [Enterobacter sp. 638] Length = 301 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 49/176 (27%), Positives = 84/176 (47%), Gaps = 6/176 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N L+ +K+++ TR R+ G VDT G+ + Sbjct: 11 IAIVGRPNVGKSTLLNTLLGQKISITSRKAQTTRHRIVGIHTEGEYQAIYVDTPGLHMEE 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN +I + LI+F+++ T D + + LR P+I+ NK+D Sbjct: 71 KRAINRLMNKAASSSIGDVELIIFVVEGTR-WTADDEMVLNKLRDGRAPVILAVNKVDNV 129 Query: 125 IAQRNF-----YEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 + + + ++F +IV +SAE + + ++ K + + P + I Sbjct: 130 QEKADLLPHLQFLASQMNFLDIVPLSAESGMNVDTIAGIVRKHLPEAIHHFPEDYI 185 Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 43/134 (32%), Positives = 71/134 (52%), Gaps = 5/134 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS-VSISWNWKNHPIEIFDTAGMRKP 264 IA+VGRPNVGKSTL+N LLG +T ++ TR V I + I + DT G+ Sbjct: 11 IAIVGRPNVGKSTLLNTLLGQKISITSRKAQTTRHRIVGIHTEGEYQAIYV-DTPGLHME 69 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 + ++ + K + S+ E I +++ T + D +++ + + V+LA+NK Sbjct: 70 EK--RAINRLMNKAASSSIGDVELIIFVVEGT-RWTADDEMVLNKLRDGRAPVILAVNKV 126 Query: 325 DMVSDKLNLLQDLR 338 D V +K +LL L+ Sbjct: 127 DNVQEKADLLPHLQ 140 >gi|315650200|ref|ZP_07903275.1| tRNA modification GTPase TrmE [Eubacterium saburreum DSM 3986] gi|315487557|gb|EFU77865.1| tRNA modification GTPase TrmE [Eubacterium saburreum DSM 3986] Length = 456 Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 43/168 (25%), Positives = 92/168 (54%), Gaps = 15/168 (8%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 I + + ++G+PN GKS+++N L +R + +G TRD+++ + + I DTA Sbjct: 216 IREGINTVIIGKPNAGKSSILNLLSRTDRAIVTDIAGTTRDTLTENIKLSGISLNITDTA 275 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R+ + ES+ VKK++++ + +V++D +P + +D+ + +SV + A++L Sbjct: 276 GIRETDDVVESI---GVKKAIEASNNADLNLVVIDGLLPLDSEDISLFESVKDK-QAIIL 331 Query: 320 ALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDL 367 +NK D ++L+ ++ ++ + D + S + GLD+L Sbjct: 332 -INKSD---------KELKV-SVDDIRKYSDKDVIIFSAKDNTGLDEL 368 Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 59/186 (31%), Positives = 93/186 (50%), Gaps = 6/186 (3%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 I+G PN GKS++ N L + A+V + G TRD L ++G+ NI DTAGI + + Sbjct: 224 IIGKPNAGKSSILNLLSRTDRAIVTDIAGTTRDTLTENIKLSGISLNITDTAGIRETDDV 283 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYD-HAITSFLRKKNIPIIIVSNKMDTRI 125 + + E A N A L L +ID G+ P D I+ F K+ II+ NK D + Sbjct: 284 VESIGVKKAIE-ASNNADLNLVVID---GLLPLDSEDISLFESVKDKQAIILINKSDKEL 339 Query: 126 AQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEESP 185 + + +I K+++ SA+ + G EL ++I F N ++I N R++E Sbjct: 340 -KVSVDDIRKYSDKDVIIFSAKDNTGLDELENMIKSKFISNEINFNDQIIITNIRHQEII 398 Query: 186 KENITS 191 E + S Sbjct: 399 NEAMES 404 >gi|332522204|ref|ZP_08398456.1| ribosome biogenesis GTPase Era [Streptococcus porcinus str. Jelinkova 176] gi|332313468|gb|EGJ26453.1| ribosome biogenesis GTPase Era [Streptococcus porcinus str. Jelinkova 176] Length = 299 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 49/178 (27%), Positives = 85/178 (47%), Gaps = 5/178 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKST N ++ +K+A++ + TR+++ G +DT GI K Sbjct: 8 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTEQEQIVFIDTPGIHKPK 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 ++ M + + E +LF++ + D I L+ IP+I+V NK+D Sbjct: 68 -TALGDFMVESAYSTLREVDTVLFMVPADEKRGKGDEMIMERLKNAKIPVILVINKIDKV 126 Query: 125 IAQRNFYEI----YSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 + +I +DFKEIV ISA L S++ ++ + P + I ++ Sbjct: 127 HPDQLLEQIDDFRSQMDFKEIVPISALEGNNIPTLMSLLTDNLEEGFQYFPADQITDH 184 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/137 (27%), Positives = 69/137 (50%), Gaps = 5/137 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKST +N ++G + ++ TR+ + + + I DT G+ KP Sbjct: 8 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTEQEQIVFIDTPGIHKPK 67 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +L V+ + ++R +T + ++ A K D I++ + N V+L +NK D Sbjct: 68 T---ALGDFMVESAYSTLREVDTVLFMVPADEKRGKGDEMIMERLKNAKIPVILVINKID 124 Query: 326 MV--SDKLNLLQDLRTK 340 V L + D R++ Sbjct: 125 KVHPDQLLEQIDDFRSQ 141 >gi|254411028|ref|ZP_05024806.1| GTP-binding protein Era [Microcoleus chthonoplastes PCC 7420] gi|196182383|gb|EDX77369.1| GTP-binding protein Era [Microcoleus chthonoplastes PCC 7420] Length = 318 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 41/130 (31%), Positives = 65/130 (50%), Gaps = 1/130 (0%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + I+G PNVGKSTL N LV +K+A+ TR+RL G + VDT GI Sbjct: 30 VGIIGRPNVGKSTLMNELVGQKIAITSPVAQTTRNRLQGILTTDNAQLIFVDTPGIHK-P 88 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + K + ++AI ++LF++D D I++ L + + P+I+ NK D + Sbjct: 89 HHQLGKVLVQNAKIAIEAVDVVLFVVDGATPAGGGDRYISNLLSQTSTPVILGINKSDLQ 148 Query: 125 IAQRNFYEIY 134 + E Y Sbjct: 149 SPGKGLDEGY 158 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/168 (25%), Positives = 75/168 (44%), Gaps = 8/168 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 + ++GRPNVGKSTL+N L+G +T + TR+ + N + DT G+ KP Sbjct: 30 VGIIGRPNVGKSTLMNELVGQKIAITSPVAQTTRNRLQGILTTDNAQLIFVDTPGIHKPH 89 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + V+ + ++ + + ++D P D I + + T V+L +NK D Sbjct: 90 H---QLGKVLVQNAKIAIEAVDVVLFVVDGATPAGGGDRYISNLLSQTSTPVILGINKSD 146 Query: 326 MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 + S L + L + + S TG+GL L +++ Sbjct: 147 LQSPGKGL-----DEGYHQLADPHNWQVTKFSALTGDGLATLQEQLID 189 >gi|134095252|ref|YP_001100327.1| GTP-binding protein Era [Herminiimonas arsenicoxydans] gi|133739155|emb|CAL62204.1| GTP-binding protein Era [Herminiimonas arsenicoxydans] Length = 300 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 51/173 (29%), Positives = 81/173 (46%), Gaps = 13/173 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N L+ K+++ TR R+ G ++ F VDT G Sbjct: 15 IAIVGRPNVGKSTLMNELIGAKVSITSRKAQTTRHRITGIQTVDDAQFVYVDTPGFQTRH 74 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + ++ K +N + + +ILF+I++ D + + KN+P I+V NK D R Sbjct: 75 SNALNKTLNRTVTTTLTASDVILFVIEA-GTFGQADQQVLDLI-PKNVPCILVINKSD-R 131 Query: 125 IAQRNFYEIYSL------DFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHP 171 + + ++ DF +V +SA+ L I K+ P +P Sbjct: 132 VKDKAVLLPFAQQIAAKRDFTAVVPVSAKLRFQLENLQGEI----KKHLPENP 180 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 40/129 (31%), Positives = 67/129 (51%), Gaps = 4/129 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA+VGRPNVGKSTL+N L+G +T ++ TR ++ + DT G + + Sbjct: 15 IAIVGRPNVGKSTLMNELIGAKVSITSRKAQTTRHRITGIQTVDDAQFVYVDTPGFQ--T 72 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 R + +L KT+ +++ + T I+ + F + D +++D + +L +NK D Sbjct: 73 RHSNAL-NKTLNRTVTTTLTASDVILFVIEAGTFGQADQQVLD-LIPKNVPCILVINKSD 130 Query: 326 MVSDKLNLL 334 V DK LL Sbjct: 131 RVKDKAVLL 139 >gi|16271988|ref|NP_438186.1| GTP-binding protein Era [Haemophilus influenzae Rd KW20] gi|68248564|ref|YP_247676.1| GTP-binding protein Era [Haemophilus influenzae 86-028NP] gi|145633430|ref|ZP_01789160.1| GTP-binding protein Era [Haemophilus influenzae 3655] gi|145636783|ref|ZP_01792449.1| GTP-binding protein Era [Haemophilus influenzae PittHH] gi|229846932|ref|ZP_04467038.1| GTP-binding protein Era [Haemophilus influenzae 7P49H1] gi|260580683|ref|ZP_05848510.1| GTP-binding protein Era [Haemophilus influenzae RdAW] gi|1169543|sp|P43728|ERA_HAEIN RecName: Full=GTPase Era gi|317374938|sp|A5UFI7|ERA_HAEIG RecName: Full=GTPase Era gi|1572957|gb|AAC21691.1| GTP-binding protein (era) [Haemophilus influenzae Rd KW20] gi|68056763|gb|AAX87016.1| GTP-binding protein era homolog [Haemophilus influenzae 86-028NP] gi|144985993|gb|EDJ92595.1| GTP-binding protein Era [Haemophilus influenzae 3655] gi|145270081|gb|EDK10018.1| GTP-binding protein Era [Haemophilus influenzae PittHH] gi|229810016|gb|EEP45736.1| GTP-binding protein Era [Haemophilus influenzae 7P49H1] gi|260092745|gb|EEW76681.1| GTP-binding protein Era [Haemophilus influenzae RdAW] Length = 302 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 48/176 (27%), Positives = 83/176 (47%), Gaps = 6/176 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N+++ +K+++ TR R+ G VDT G+ + Sbjct: 13 IAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIKTEGAYQEIYVDTPGLHIEE 72 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN AI + LI+F++D D + + LR P+++ NK+D Sbjct: 73 KRAINRLMNRAASSAIGDVDLIIFVVDG-THWNADDEMVLNKLRNAKAPVVLAINKVDNI 131 Query: 125 IAQRNFYEIYS-----LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 + + + +F IV ISA+ EL ++ + ++ + P + + Sbjct: 132 KNKDDLLPFITDLSSKFNFAHIVPISAQRGNNVHELEKIVRQSLREGVHHFPEDYV 187 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 42/131 (32%), Positives = 70/131 (53%), Gaps = 7/131 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIF-DTAGMR-K 263 IA+VGRPNVGKSTL+N++LG +T ++ TR + + + EI+ DT G+ + Sbjct: 13 IAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRI-VGIKTEGAYQEIYVDTPGLHIE 71 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 R L + ++ V + I ++D T + D +++ + N VVLA+NK Sbjct: 72 EKRAINRLMNRAASSAIGDV---DLIIFVVDGT-HWNADDEMVLNKLRNAKAPVVLAINK 127 Query: 324 WDMVSDKLNLL 334 D + +K +LL Sbjct: 128 VDNIKNKDDLL 138 >gi|161702952|ref|YP_370756.2| tRNA modification GTPase TrmE [Burkholderia sp. 383] gi|205829162|sp|Q39BQ4|MNME_BURS3 RecName: Full=tRNA modification GTPase mnmE Length = 464 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 50/188 (26%), Positives = 87/188 (46%), Gaps = 14/188 (7%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + L + + G+PNVGKS+L+N L G + +G TRD V+ + + P+ I DTA Sbjct: 223 LREGLSVVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTA 282 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R+ + +E+ + ++ + + + LLD+ D I + F G VV Sbjct: 283 GLRETE---DEVERIGIARTWSEIERADVVLHLLDSRNGMTADDETIA-ARFPGGVPVVR 338 Query: 320 ALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWK 379 LNK D+ +++ GD+ +S + G+G+D L +L I W+ Sbjct: 339 VLNKTDLTG---------VAACVEHPAAEGDLTEVHLSAKRGDGIDMLRAELLRIAG-WQ 388 Query: 380 TRITTSYL 387 YL Sbjct: 389 AGAEGVYL 396 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 49/164 (29%), Positives = 85/164 (51%), Gaps = 12/164 (7%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 ++ + G PNVGKS+L N L ++A+V G TRD++ + G+ +I+DTAG+ + Sbjct: 228 SVVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRET 287 Query: 64 KN----CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 ++ IA+ ++ I A ++L L+DS+ G+T D I + +P++ V N Sbjct: 288 EDEVERIGIARTWSE-----IERADVVLHLLDSRNGMTADDETIAARF-PGGVPVVRVLN 341 Query: 120 KMD-TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKI 162 K D T +A + D E V +SA+ G L + + +I Sbjct: 342 KTDLTGVAACVEHPAAEGDLTE-VHLSAKRGDGIDMLRAELLRI 384 >gi|145635203|ref|ZP_01790907.1| GTP-binding protein Era [Haemophilus influenzae PittAA] gi|229845359|ref|ZP_04465490.1| GTP-binding protein Era [Haemophilus influenzae 6P18H1] gi|260582073|ref|ZP_05849868.1| GTP-binding protein Era [Haemophilus influenzae NT127] gi|145267482|gb|EDK07482.1| GTP-binding protein Era [Haemophilus influenzae PittAA] gi|229811667|gb|EEP47365.1| GTP-binding protein Era [Haemophilus influenzae 6P18H1] gi|260094963|gb|EEW78856.1| GTP-binding protein Era [Haemophilus influenzae NT127] Length = 302 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 48/176 (27%), Positives = 83/176 (47%), Gaps = 6/176 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N+++ +K+++ TR R+ G VDT G+ + Sbjct: 13 IAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIKTEGAYQEIYVDTPGLHIEE 72 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN AI + LI+F++D D + + LR P+++ NK+D Sbjct: 73 KRAINRLMNRAASSAIGDVDLIIFVVDG-THWNADDEMVLNKLRNAKAPVVLAINKVDNI 131 Query: 125 IAQRNFYEIYS-----LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 + + + +F IV ISA+ EL ++ + ++ + P + + Sbjct: 132 KNKDDLLPFITGLSSKFNFAHIVPISAQRGNNVHELEKIVRQSLREGVHHFPEDYV 187 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 42/131 (32%), Positives = 70/131 (53%), Gaps = 7/131 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIF-DTAGMR-K 263 IA+VGRPNVGKSTL+N++LG +T ++ TR + + + EI+ DT G+ + Sbjct: 13 IAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRI-VGIKTEGAYQEIYVDTPGLHIE 71 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 R L + ++ V + I ++D T + D +++ + N VVLA+NK Sbjct: 72 EKRAINRLMNRAASSAIGDV---DLIIFVVDGT-HWNADDEMVLNKLRNAKAPVVLAINK 127 Query: 324 WDMVSDKLNLL 334 D + +K +LL Sbjct: 128 VDNIKNKDDLL 138 >gi|326801518|ref|YP_004319337.1| tRNA modification GTPase mnmE [Sphingobacterium sp. 21] gi|326552282|gb|ADZ80667.1| tRNA modification GTPase mnmE [Sphingobacterium sp. 21] Length = 456 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 46/127 (36%), Positives = 67/127 (52%), Gaps = 19/127 (14%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 I I G PNVGKSTL N L+ ++ A+V + G TRD + + I GV F +DTAGI D + Sbjct: 224 IVIAGKPNVGKSTLLNALLNEERAIVSDIAGTTRDTIEDEINIQGVSFRFIDTAGIRDTE 283 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITS---------FLRKKNIPII 115 + AK + ++T + +A L+++L+D P D A LR P + Sbjct: 284 DIIEAKGV-ERTREKMKKARLVIYLVD------PVDDAFEEVSIQVADLILLRT---PFV 333 Query: 116 IVSNKMD 122 +V NK D Sbjct: 334 LVINKKD 340 Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 54/184 (29%), Positives = 92/184 (50%), Gaps = 13/184 (7%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 I + G+PNVGKSTL+N LL R + +G TRD++ N + DTAG+R Sbjct: 224 IVIAGKPNVGKSTLLNALLNEERAIVSDIAGTTRDTIEDEINIQGVSFRFIDTAGIRDTE 283 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLD-ATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 I +E K V+++ + ++ I L+D FE+ +++ D + VL +NK Sbjct: 284 DI---IEAKGVERTREKMKKARLVIYLVDPVDDAFEEVSIQVADLIL-LRTPFVLVINKK 339 Query: 325 DMVS-DKLNLLQDL-----RTKAIKNLPQIGDIYINTISGRTGEGLDDLMVS-VLEINKL 377 D++S D L + L K+ + + + +N +S R +DD+MV+ + + L Sbjct: 340 DLLSPDALAQYEPLNPVFISAKSGDGVEALKEELLNQVSLRN-INVDDVMVTNIRHVEAL 398 Query: 378 WKTR 381 KT+ Sbjct: 399 LKTQ 402 >gi|229550722|ref|ZP_04439447.1| tRNA modification GTPase TrmE [Enterococcus faecalis ATCC 29200] gi|229304155|gb|EEN70151.1| tRNA modification GTPase TrmE [Enterococcus faecalis ATCC 29200] Length = 465 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 46/160 (28%), Positives = 87/160 (54%), Gaps = 7/160 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L++++ A+V + G TRD + + GV ++DTAGI + ++ Sbjct: 231 AIIGRPNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETED 290 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD--T 123 + + +++ A+ ++ LIL +++ +T D + K + +I+ NKMD T Sbjct: 291 I-VERIGVERSRKALADSDLILLVLNQSEELTEEDRQLLE--ATKGLKRVILLNKMDLPT 347 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 ++ E+ +EI+ +S + G +L + I +F Sbjct: 348 KLDPNELQELVP--AEEILSVSVLSNTGLDQLEAKIADLF 385 Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 38/129 (29%), Positives = 75/129 (58%), Gaps = 5/129 (3%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L A++GRPNVGKS+L+N LL + + +G TRD + N + P+++ D Sbjct: 222 KILREGLSTAIIGRPNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLID 281 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ I E + V++S +++ + +++L+ + ++D +++++ G Sbjct: 282 TAGIRETEDIVERI---GVERSRKALADSDLILLVLNQSEELTEEDRQLLEA--TKGLKR 336 Query: 318 VLALNKWDM 326 V+ LNK D+ Sbjct: 337 VILLNKMDL 345 >gi|254445762|ref|ZP_05059238.1| tRNA modification GTPase TrmE [Verrucomicrobiae bacterium DG1235] gi|198260070|gb|EDY84378.1| tRNA modification GTPase TrmE [Verrucomicrobiae bacterium DG1235] Length = 452 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 87/171 (50%), Gaps = 16/171 (9%) Query: 208 VVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRI 267 ++G PN GKS+L+N LLG+ R + + G TRD + H +++ DTAG+R+ Sbjct: 222 ILGEPNAGKSSLMNCLLGFERAIVSEEPGTTRDFIRERVIVDGHCLQLMDTAGLREAE-- 279 Query: 268 TESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFN--TGHAVVLALNKWD 325 +E++ ++K+++ + +++LD T+P + DSV T ++ NK D Sbjct: 280 -SGIERQGIQKTVELSEEADLFLLVLDGTLPSPA----LPDSVAKRITAKNCIVVRNKSD 334 Query: 326 M-----VSDKLNLLQDLRTKAI--KNLPQIGDIYINTISGRTGEGLDDLMV 369 + +S++L L+ L AI + L ++ + + I DDL++ Sbjct: 335 LGERHPLSEQLCGLEQLSMAAISGEGLLELRERIVKMIDAHLAHDRDDLIL 385 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 61/221 (27%), Positives = 102/221 (46%), Gaps = 11/221 (4%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 I+G PN GKS+L N L+ + A+V PG TRD + + I++G ++DTAG+ + ++ Sbjct: 222 ILGEPNAGKSSLMNCLLGFERAIVSEEPGTTRDFIRERVIVDGHCLQLMDTAGLREAES- 280 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 I +Q +T EA L L ++D ++ + KN I+V NK D + Sbjct: 281 GIERQGIQKTVELSEEADLFLLVLDGTLPSPALPDSVAKRITAKN--CIVVRNKSD--LG 336 Query: 127 QRN--FYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 +R+ ++ L+ + IS E G EL I K+ + ++I N R+ + Sbjct: 337 ERHPLSEQLCGLEQLSMAAISGE---GLLELRERIVKMIDAHLAHDRDDLILVNARHSAA 393 Query: 185 PKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLG 225 KE + S+++N V G I R+LG Sbjct: 394 LKE-LAECLASAIRNFEAGEPAEFVASELRGAIEAIGRVLG 433 >gi|15894928|ref|NP_348277.1| GTPase [Clostridium acetobutylicum ATCC 824] gi|15024610|gb|AAK79617.1|AE007674_6 Predicted GTPase with uncharacterized domain, ortholog of T.maritima (4980952) [Clostridium acetobutylicum ATCC 824] gi|325509065|gb|ADZ20701.1| GTPase with uncharacterized domain [Clostridium acetobutylicum EA 2018] Length = 411 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 51/160 (31%), Positives = 88/160 (55%), Gaps = 7/160 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLY-GQAIINGVIFNIVDTAGIADG 63 IA+ G NVGKS++ N L +++A+V N G T D +Y ++ ++DTAG+ D Sbjct: 15 IALFGKTNVGKSSVINALTSQEIALVSNVKGTTTDPVYKAMELLPLGPVMLIDTAGLDDI 74 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + + + +T +++ + + + D ++GIT YD I S L +K IP+I V NK+D Sbjct: 75 SD--LGELRRGKTLEVLSKTDVAILVFDVESGITEYDKNIYSLLLEKKIPLIGVLNKIDK 132 Query: 124 RIAQRNFYEIYSLDFK-EIVEISAEHDLGTSELHSVIFKI 162 + + E Y+ FK IV ISA ++ G + L + ++ Sbjct: 133 KDYK---LEDYTSQFKIPIVPISALNNKGINNLKDELIRL 169 Score = 40.4 bits (93), Expect = 0.64, Method: Compositional matrix adjust. Identities = 34/123 (27%), Positives = 54/123 (43%), Gaps = 5/123 (4%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWN-WKNHPIEIFDTAGMR 262 L IA+ G+ NVGKS++IN L L + G T D V + P+ + DTAG+ Sbjct: 13 LHIALFGKTNVGKSSVINALTSQEIALVSNVKGTTTDPVYKAMELLPLGPVMLIDTAGLD 72 Query: 263 KPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALN 322 S + E KT ++ + + I++ D + D I + ++ LN Sbjct: 73 DISDLGELRRGKT----LEVLSKTDVAILVFDVESGITEYDKNIYSLLLEKKIPLIGVLN 128 Query: 323 KWD 325 K D Sbjct: 129 KID 131 >gi|258544267|ref|ZP_05704501.1| tRNA modification GTPase TrmE [Cardiobacterium hominis ATCC 15826] gi|258520505|gb|EEV89364.1| tRNA modification GTPase TrmE [Cardiobacterium hominis ATCC 15826] Length = 446 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 69/120 (57%), Gaps = 5/120 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 + + G+PN GKS+L+N L+G R + +Q+G TRD V + P+ I DTAG+R+ S Sbjct: 219 LVIAGKPNAGKSSLLNALVGEERAIVTAQAGTTRDIVRETILIHGMPVNILDTAGLREAS 278 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + +EQ+ ++++ Q++ + ++L D + ++ D + +T ++LA NK D Sbjct: 279 DL---VEQEGIRRTRQALNQADLILLLRDGSALDDRGDETLPPESADT--PLLLAYNKAD 333 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 40/118 (33%), Positives = 64/118 (54%), Gaps = 3/118 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + I G PN GKS+L N LV ++ A+V G TRD + +I+G+ NI+DTAG+ + Sbjct: 219 LVIAGKPNAGKSSLLNALVGEERAIVTAQAGTTRDIVRETILIHGMPVNILDTAGLREAS 278 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + + ++ +T A+N+A LIL L D A D + + P+++ NK D Sbjct: 279 DL-VEQEGIRRTRQALNQADLILLLRDGSALDDRGDETLPP--ESADTPLLLAYNKAD 333 >gi|227518132|ref|ZP_03948181.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0104] gi|227074400|gb|EEI12363.1| tRNA modification GTPase TrmE [Enterococcus faecalis TX0104] Length = 465 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 46/160 (28%), Positives = 87/160 (54%), Gaps = 7/160 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L++++ A+V + G TRD + + GV ++DTAGI + ++ Sbjct: 231 AIIGRPNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETED 290 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD--T 123 + + +++ A+ ++ LIL +++ +T D + K + +I+ NKMD T Sbjct: 291 I-VERIGVERSRKALADSDLILLVLNQSEELTEEDRQLLEA--TKGLKRVILLNKMDLPT 347 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 ++ E+ +EI+ +S + G +L + I +F Sbjct: 348 KLDPNELQELVP--AEEILSVSVLSNTGLDQLETKIADLF 385 Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 38/129 (29%), Positives = 75/129 (58%), Gaps = 5/129 (3%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L A++GRPNVGKS+L+N LL + + +G TRD + N + P+++ D Sbjct: 222 KILREGLSTAIIGRPNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLID 281 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ I E + V++S +++ + +++L+ + ++D +++++ G Sbjct: 282 TAGIRETEDIVERI---GVERSRKALADSDLILLVLNQSEELTEEDRQLLEA--TKGLKR 336 Query: 318 VLALNKWDM 326 V+ LNK D+ Sbjct: 337 VILLNKMDL 345 >gi|329894824|ref|ZP_08270624.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [gamma proteobacterium IMCC3088] gi|328922718|gb|EGG30052.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [gamma proteobacterium IMCC3088] Length = 460 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 32/102 (31%), Positives = 59/102 (57%), Gaps = 3/102 (2%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 I + L +A+VG PN GKS+L+N+L G ++ + G TRD++ N K P+ DTA Sbjct: 218 IQEGLTVALVGAPNAGKSSLLNQLCGLDKAIVTDIPGTTRDTLETVVNIKGVPVTFIDTA 277 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEK 301 G+R + +EQ +++++ ++ + + L+DA+ E+ Sbjct: 278 GLRLTDDV---IEQAGIQRAVNTLERAQLVLFLMDASATSEQ 316 Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 48/132 (36%), Positives = 69/132 (52%), Gaps = 20/132 (15%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAG--I 60 T+A+VGAPN GKS+L N+L A+V + PG TRD L I GV +DTAG + Sbjct: 222 LTVALVGAPNAGKSSLLNQLCGLDKAIVTDIPGTTRDTLETVVNIKGVPVTFIDTAGLRL 281 Query: 61 ADG--KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF-LRKKNI----- 112 D + I + +N + A L+LFL+D+ A + +++ F L N+ Sbjct: 282 TDDVIEQAGIQRAVN-----TLERAQLVLFLMDASA---TSEQSVSLFTLLPSNLAEACL 333 Query: 113 --PIIIVSNKMD 122 P I VSNK+D Sbjct: 334 AHPFIGVSNKID 345 >gi|323479218|gb|ADX78657.1| tRNA modification GTPase TrmE [Enterococcus faecalis 62] Length = 460 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 46/160 (28%), Positives = 87/160 (54%), Gaps = 7/160 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L++++ A+V + G TRD + + GV ++DTAGI + ++ Sbjct: 226 AIIGRPNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETED 285 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD--T 123 + + +++ A+ ++ LIL +++ +T D + K + +I+ NKMD T Sbjct: 286 I-VERIGVERSRKALADSDLILLVLNQSEELTEEDRQLLE--ATKGLKRVILLNKMDLPT 342 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 ++ E+ +EI+ +S + G +L + I +F Sbjct: 343 KLDPNELQELVP--AEEILSVSVLSNTGLDQLEAKIADLF 380 Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 38/129 (29%), Positives = 75/129 (58%), Gaps = 5/129 (3%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L A++GRPNVGKS+L+N LL + + +G TRD + N + P+++ D Sbjct: 217 KILREGLSTAIIGRPNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLID 276 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ I E + V++S +++ + +++L+ + ++D +++++ G Sbjct: 277 TAGIRETEDIVERI---GVERSRKALADSDLILLVLNQSEELTEEDRQLLEA--TKGLKR 331 Query: 318 VLALNKWDM 326 V+ LNK D+ Sbjct: 332 VILLNKMDL 340 >gi|301168614|emb|CBW28204.1| membrane-associated, 16S rRNA-binding GTPase [Haemophilus influenzae 10810] Length = 302 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 48/176 (27%), Positives = 83/176 (47%), Gaps = 6/176 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N+++ +K+++ TR R+ G VDT G+ + Sbjct: 13 IAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIKTEGAYQEIYVDTPGLHIEE 72 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN AI + LI+F++D D + + LR P+++ NK+D Sbjct: 73 KRAINRLMNRAASSAIGDVDLIIFVVDG-THWNADDEMVLNKLRNAKAPVVLAINKVDNI 131 Query: 125 IAQRNFYEIYS-----LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 + + + +F IV ISA+ EL ++ + ++ + P + + Sbjct: 132 KNKDDLLPFITGLSSKFNFAHIVPISAQRGNNVHELEKIVRQSLREGVHHFPEDYV 187 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 42/131 (32%), Positives = 70/131 (53%), Gaps = 7/131 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIF-DTAGMR-K 263 IA+VGRPNVGKSTL+N++LG +T ++ TR + + + EI+ DT G+ + Sbjct: 13 IAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRI-VGIKTEGAYQEIYVDTPGLHIE 71 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 R L + ++ V + I ++D T + D +++ + N VVLA+NK Sbjct: 72 EKRAINRLMNRAASSAIGDV---DLIIFVVDGT-HWNADDEMVLNKLRNAKAPVVLAINK 127 Query: 324 WDMVSDKLNLL 334 D + +K +LL Sbjct: 128 VDNIKNKDDLL 138 >gi|294794209|ref|ZP_06759345.1| tRNA modification GTPase TrmE [Veillonella sp. 3_1_44] gi|294454539|gb|EFG22912.1| tRNA modification GTPase TrmE [Veillonella sp. 3_1_44] Length = 461 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 45/152 (29%), Positives = 79/152 (51%), Gaps = 3/152 (1%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T IVG PN GKS+L N L+++ A+V + PG TRD + + G+ ++DTAGI D Sbjct: 225 TTVIVGCPNAGKSSLMNALLRENRAIVTDIPGTTRDSIEEYMTVEGISLRLIDTAGIRDT 284 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 ++ A + ++ IN+A ++L +ID + P + I + + N +++ + + Sbjct: 285 QDTVEALGV-ERARDYINKADIVLCVIDGSTPLNPEEIEILTSVSGLNTIVLLNKSDVAQ 343 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 + N E +F I ISA+ G++ L Sbjct: 344 VVTDENIKE--HGNFTAIERISAKEGEGSAVL 373 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 54/202 (26%), Positives = 94/202 (46%), Gaps = 20/202 (9%) Query: 167 YPNHPLEMIENNK-RNEESP----KENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLIN 221 YP +E + + + R++ P E++ S + + I + +VG PN GKS+L+N Sbjct: 183 YPEEDIEDVTSQEVRDQLQPILKAMEDLLSTANTG-RLIRDGITTVIVGCPNAGKSSLMN 241 Query: 222 RLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQ 281 LL NR + G TRDS+ + + + DTAG+R E+L V+++ Sbjct: 242 ALLRENRAIVTDIPGTTRDSIEEYMTVEGISLRLIDTAGIRDTQDTVEAL---GVERARD 298 Query: 282 SVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKA 341 + + + ++D + P +++ I+ SV +G ++ LNK SD ++ D K Sbjct: 299 YINKADIVLCVIDGSTPLNPEEIEILTSV--SGLNTIVLLNK----SDVAQVVTDENIKE 352 Query: 342 IKNLPQIGDIYINTISGRTGEG 363 N I IS + GEG Sbjct: 353 HGNFTA-----IERISAKEGEG 369 >gi|88607072|ref|YP_505803.1| tRNA modification GTPase TrmE [Anaplasma phagocytophilum HZ] gi|123494246|sp|Q2GIJ8|MNME_ANAPZ RecName: Full=tRNA modification GTPase mnmE gi|88598135|gb|ABD43605.1| tRNA modification GTPase TrmE [Anaplasma phagocytophilum HZ] Length = 445 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 50/170 (29%), Positives = 82/170 (48%), Gaps = 16/170 (9%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + I+G PN GKSTLFN + ++ A+V HPG TRD L I G + ++DTAGI + Sbjct: 220 VVILGPPNAGKSTLFNSIARRNAAIVSEHPGTTRDVLEVAIDIGGYPYIVLDTAGIRESC 279 Query: 65 NCSIAKQMNDQTELAINEAHLILFL----IDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + I ++ + ++A EA + + + S GI P I +K I ++ ++ Sbjct: 280 D-GIEQEGIKRAKMAAEEADIKIVMYPYETTSMQGIDP----ICDLQDEKTILVLSKADN 334 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNH 170 +D E +D KE IS D G +L ++I + + +P Sbjct: 335 VD-------LPESKCIDGKEFHLISVHQDRGIGKLLTLIQEKSRDSFPQE 377 Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 44/179 (24%), Positives = 86/179 (48%), Gaps = 29/179 (16%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 +R+ ++G PN GKSTL N + N + G TRD + ++ + +P + DTAG+R+ Sbjct: 218 VRVVILGPPNAGKSTLFNSIARRNAAIVSEHPGTTRDVLEVAIDIGGYPYIVLDTAGIRE 277 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFN-TGHAVVLALN 322 + +EQ+ +K++ + + IV+ P+E ++ +D + + +L L+ Sbjct: 278 S---CDGIEQEGIKRAKMAAEEADIKIVMY----PYETTSMQGIDPICDLQDEKTILVLS 330 Query: 323 KWDMV---------SDKLNLL---QD---------LRTKAIKNLPQIGDIYINTISGRT 360 K D V + +L+ QD ++ K+ + PQ GD++I + R+ Sbjct: 331 KADNVDLPESKCIDGKEFHLISVHQDRGIGKLLTLIQEKSRDSFPQEGDVFITSQRHRS 389 >gi|311359265|gb|ADP94166.1| TrmE [Treponema pallidum subsp. pertenue] gi|311705156|gb|ADQ01045.1| TrmE [Treponema pallidum subsp. pertenue] gi|311705164|gb|ADQ01052.1| TrmE [Treponema pallidum subsp. pertenue str. Gauthier] gi|313505077|gb|ADR64245.1| TrmE [Treponema pallidum] Length = 495 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 63/118 (53%), Gaps = 4/118 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 I + G PN GKS+LFN L+ + A+V + PG TRD L ++G+ + DTAG+ Sbjct: 226 IVLGGCPNAGKSSLFNALLGQDRAIVSSVPGTTRDWLEADLDLSGIPVRLCDTAGLRVTD 285 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 N I Q ++E + A + ++I+ +AG+ D +FL +P+++V D Sbjct: 286 N-PIEAQGVVRSEQLLQGADCVFYIINGRAGVQAAD---CAFLSDCAVPLVVVVTHND 339 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 31/101 (30%), Positives = 54/101 (53%), Gaps = 5/101 (4%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 +RI + G PN GKS+L N LLG +R + S G TRD + + P+ + DTAG+ Sbjct: 224 VRIVLGGCPNAGKSSLFNALLGQDRAIVSSVPGTTRDWLEADLDLSGIPVRLCDTAGL-- 281 Query: 264 PSRITES-LEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 R+T++ +E + V +S Q ++ + +++ + D Sbjct: 282 --RVTDNPIEAQGVVRSEQLLQGADCVFYIINGRAGVQAAD 320 >gi|220905798|ref|YP_002481109.1| GTP-binding protein Era [Cyanothece sp. PCC 7425] gi|219862409|gb|ACL42748.1| GTP-binding protein Era [Cyanothece sp. PCC 7425] Length = 315 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 62/120 (51%), Gaps = 1/120 (0%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A++G PNVGKSTL N+L+ +K+A+ TR+RL G + VDT GI Sbjct: 26 VALIGRPNVGKSTLMNQLIGQKVAITSPVAQTTRNRLRGILTTSTAQLIFVDTPGIHK-P 84 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + S+ + + LAI L+LF++D D + L+K P+++ NK D + Sbjct: 85 HHSLGEVLVKNATLAIAAVDLVLFIVDGSVKAGGGDRFVAELLQKAKTPVMVGVNKSDAQ 144 Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 42/168 (25%), Positives = 78/168 (46%), Gaps = 8/168 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKSTL+N+L+G +T + TR+ + + DT G+ KP Sbjct: 26 VALIGRPNVGKSTLMNQLIGQKVAITSPVAQTTRNRLRGILTTSTAQLIFVDTPGIHKPH 85 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 SL + VK + ++ + + ++D ++ D + + + V++ +NK D Sbjct: 86 H---SLGEVLVKNATLAIAAVDLVLFIVDGSVKAGGGDRFVAELLQKAKTPVMVGVNKSD 142 Query: 326 MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 +D D ++ +L + S TGEGL L +++ Sbjct: 143 AQTDP-----DTLDRSYDSLIAEQGWPLVKFSALTGEGLAALQTQLID 185 >gi|194016355|ref|ZP_03054969.1| tRNA modification GTPase TrmE [Bacillus pumilus ATCC 7061] gi|194011828|gb|EDW21396.1| tRNA modification GTPase TrmE [Bacillus pumilus ATCC 7061] Length = 459 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 36/129 (27%), Positives = 75/129 (58%), Gaps = 5/129 (3%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L ++GRPNVGKS+L+N L+ + + G TRD + N + P+ + D Sbjct: 216 KILREGLSTVIIGRPNVGKSSLLNSLVQETKAIVTDIPGTTRDVIEEYVNVRGVPLRLVD 275 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ I E + V++S Q ++ + +++L+ + ++D+++ ++V +G + Sbjct: 276 TAGIRETEDIVERI---GVERSRQVLKEADLILLVLNYSEELSEEDIKLFEAV--SGMDI 330 Query: 318 VLALNKWDM 326 ++ +NK D+ Sbjct: 331 IVIVNKTDL 339 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 40/116 (34%), Positives = 66/116 (56%), Gaps = 3/116 (2%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 I+G PNVGKS+L N LV++ A+V + PG TRD + + GV +VDTAGI + ++ Sbjct: 226 IIGRPNVGKSSLLNSLVQETKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDI 285 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + + +++ + EA LIL +++ ++ D I F + II++ NK D Sbjct: 286 -VERIGVERSRQVLKEADLILLVLNYSEELSEED--IKLFEAVSGMDIIVIVNKTD 338 >gi|288555745|ref|YP_003427680.1| Era/ThdF family GTP-binding protein [Bacillus pseudofirmus OF4] gi|288546905|gb|ADC50788.1| Era/ThdF family GTP-binding protein [Bacillus pseudofirmus OF4] Length = 303 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 42/147 (28%), Positives = 76/147 (51%), Gaps = 7/147 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 ++I+G PNVGKSTL N ++ +K+A++ + P TR+++ G N +DT GI K Sbjct: 13 VSIIGRPNVGKSTLLNYVIGQKIAIMSDKPQTTRNKIQGVYTSNESQVVFIDTPGIHKPK 72 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + M + + E LIL+++D+ + I L++ P+ +V NK+D + Sbjct: 73 H-KLGDFMMKVAQNTLREVDLILYVVDAGEAFGSGEEFIIERLKETKTPVFLVINKID-K 130 Query: 125 IAQRNFYEIYS-----LDFKEIVEISA 146 + + I DF E++ +SA Sbjct: 131 VQPDDLLGIIETYRTKFDFTEVIPVSA 157 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/137 (27%), Positives = 68/137 (49%), Gaps = 5/137 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 ++++GRPNVGKSTL+N ++G + + TR+ + + + DT G+ KP Sbjct: 13 VSIIGRPNVGKSTLLNYVIGQKIAIMSDKPQTTRNKIQGVYTSNESQVVFIDTPGIHKPK 72 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L +K + ++R + + ++DA F + I++ + T V L +NK D Sbjct: 73 H---KLGDFMMKVAQNTLREVDLILYVVDAGEAFGSGEEFIIERLKETKTPVFLVINKID 129 Query: 326 MV--SDKLNLLQDLRTK 340 V D L +++ RTK Sbjct: 130 KVQPDDLLGIIETYRTK 146 >gi|157694475|ref|YP_001488937.1| tRNA modification GTPase TrmE [Bacillus pumilus SAFR-032] gi|205829058|sp|A8FJG0|MNME_BACP2 RecName: Full=tRNA modification GTPase mnmE gi|157683233|gb|ABV64377.1| tRNA modification GTP-binding protein TrmE [Bacillus pumilus SAFR-032] Length = 459 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 36/129 (27%), Positives = 75/129 (58%), Gaps = 5/129 (3%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L ++GRPNVGKS+L+N L+ + + G TRD + N + P+ + D Sbjct: 216 KILREGLSTVIIGRPNVGKSSLLNSLVQETKAIVTDIPGTTRDVIEEYVNVRGVPLRLVD 275 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ I E + V++S Q ++ + +++L+ + ++D+++ ++V +G + Sbjct: 276 TAGIRETEDIVERI---GVERSRQVLKEADLILLVLNYSEELSEEDIKLFEAV--SGMDI 330 Query: 318 VLALNKWDM 326 ++ +NK D+ Sbjct: 331 IVIVNKTDL 339 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 40/116 (34%), Positives = 66/116 (56%), Gaps = 3/116 (2%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 I+G PNVGKS+L N LV++ A+V + PG TRD + + GV +VDTAGI + ++ Sbjct: 226 IIGRPNVGKSSLLNSLVQETKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDI 285 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + + +++ + EA LIL +++ ++ D I F + II++ NK D Sbjct: 286 -VERIGVERSRQVLKEADLILLVLNYSEELSEED--IKLFEAVSGMDIIVIVNKTD 338 >gi|187479888|ref|YP_787913.1| tRNA modification GTPase TrmE [Bordetella avium 197N] gi|123513530|sp|Q2KTI2|MNME_BORA1 RecName: Full=tRNA modification GTPase mnmE gi|115424475|emb|CAJ51029.1| probable tRNA modification GTPase [Bordetella avium 197N] Length = 450 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 52/162 (32%), Positives = 81/162 (50%), Gaps = 17/162 (10%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + + G PNVGKS+L N L +A+V G TRD++ + I+GV +IVDTAG+ + + Sbjct: 222 VVLAGQPNVGKSSLLNALAGDDIAIVTPIAGTTRDKVVQEIFIDGVPLHIVDTAGLRETE 281 Query: 65 NC----SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + IA+ + I A LIL L D+ A D IT+ L + P++ V NK Sbjct: 282 DTVESIGIARTWKE-----IERADLILHLQDATAPGDILDVDITARLPART-PVLAVFNK 335 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKI 162 +D + E + ISA+ LG EL + + ++ Sbjct: 336 IDLLTSTAQLAE-------NSIGISAKQGLGLEELRARLLQM 370 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/175 (26%), Positives = 83/175 (47%), Gaps = 20/175 (11%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + L + + G+PNVGKS+L+N L G + + +G TRD V P+ I DTA Sbjct: 216 LREGLHVVLAGQPNVGKSSLLNALAGDDIAIVTPIAGTTRDKVVQEIFIDGVPLHIVDTA 275 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R+ ES+ + ++ + + + + L DAT P + D+ I + V+ Sbjct: 276 GLRETEDTVESI---GIARTWKEIERADLILHLQDATAPGDILDVDIT-ARLPARTPVLA 331 Query: 320 ALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEI 374 NK D+++ L ++ IG IS + G GL++L +L++ Sbjct: 332 VFNKIDLLTSTAQLAEN----------SIG------ISAKQGLGLEELRARLLQM 370 >gi|305666624|ref|YP_003862911.1| tRNA modification GTPase [Maribacter sp. HTCC2170] gi|88708895|gb|EAR01130.1| tRNA modification GTPase [Maribacter sp. HTCC2170] Length = 470 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 45/129 (34%), Positives = 69/129 (53%), Gaps = 16/129 (12%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N L+ ++ A+V + G TRD + + I G+ F +DTAGI D K Sbjct: 224 VAIVGEPNVGKSTLLNALLNEEKAIVSDIAGTTRDAIEDEIAIGGIGFRFIDTAGIRDTK 283 Query: 65 ----NCSIAKQMNDQTELAINEAHLILFL------IDSKAGITPYDHAITSFLRKK-NIP 113 N I K I ++ ++LFL +++ +T + + K N P Sbjct: 284 DIVENIGIKKTFE-----KIEQSQVVLFLHSAEEFQNAEISLTSLQNEVGKISTKHPNKP 338 Query: 114 IIIVSNKMD 122 ++I+ NK+D Sbjct: 339 LVIIVNKID 347 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 50/176 (28%), Positives = 84/176 (47%), Gaps = 18/176 (10%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 I K + +A+VG PNVGKSTL+N LL + + +G TRD++ DTA Sbjct: 218 IKKGIPVAIVGEPNVGKSTLLNALLNEEKAIVSDIAGTTRDAIEDEIAIGGIGFRFIDTA 277 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVD-----SVFNTG 314 G+R I E++ +KK+ + + + + L A F+ ++ + +T Sbjct: 278 GIRDTKDIVENI---GIKKTFEKIEQSQVVLFLHSAE-EFQNAEISLTSLQNEVGKISTK 333 Query: 315 H---AVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDL 367 H +V+ +NK D++++K Q L T L I IS +TGE ++D+ Sbjct: 334 HPNKPLVIIVNKIDILNNKER--QQLETL----LSNIEGTTYKLISAKTGESVEDV 383 >gi|150391794|ref|YP_001321843.1| small GTP-binding protein [Alkaliphilus metalliredigens QYMF] gi|149951656|gb|ABR50184.1| small GTP-binding protein [Alkaliphilus metalliredigens QYMF] Length = 399 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 55/159 (34%), Positives = 79/159 (49%), Gaps = 7/159 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIIN--GVIFNIVDTAGIAD 62 IAI G NVGKS+L N L + +AVV G T D +Y I G + ++DT GI D Sbjct: 12 IAIFGRRNVGKSSLINALTDQDIAVVSQVAGTTTDPVYKSMEILPIGPVL-LIDTPGIDD 70 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 I + ++T+ + + L L + D++ GI Y+ + +R K IPIIIV NK+D Sbjct: 71 --EGMIGELRIEKTKKVLGKTDLALIVTDAEIGIGEYEEGLIDTIRSKEIPIIIVYNKID 128 Query: 123 TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 A ++ Y IV SA+ + G L I K Sbjct: 129 LFHASKDISTEYLT--IPIVSTSAKANSGIEALKQRIIK 165 Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust. Identities = 33/124 (26%), Positives = 61/124 (49%), Gaps = 5/124 (4%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWN-WKNHPIEIFDTAGMR 262 L IA+ GR NVGKS+LIN L + + +G T D V S P+ + DT G+ Sbjct: 10 LHIAIFGRRNVGKSSLINALTDQDIAVVSQVAGTTTDPVYKSMEILPIGPVLLIDTPGID 69 Query: 263 KPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALN 322 I E ++K+ + + + +++ DA I + + ++D++ + +++ N Sbjct: 70 DEGMIGEL----RIEKTKKVLGKTDLALIVTDAEIGIGEYEEGLIDTIRSKEIPIIIVYN 125 Query: 323 KWDM 326 K D+ Sbjct: 126 KIDL 129 >gi|295677175|ref|YP_003605699.1| GTP-binding protein Era [Burkholderia sp. CCGE1002] gi|295437018|gb|ADG16188.1| GTP-binding protein Era [Burkholderia sp. CCGE1002] Length = 287 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 48/170 (28%), Positives = 84/170 (49%), Gaps = 9/170 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N LV +K+++ TR R+ G + + VDT G Sbjct: 2 VAIVGRPNVGKSTLMNALVGQKVSITSRKAQTTRHRITGINTLEDAQYIFVDTPGFQTRH 61 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + ++ + +N + ILF+I++ P D + + K +P ++++NK+D R Sbjct: 62 SGALNRSLNRAVTSTLTSVDAILFVIEA-GRFGPDDQKVLDLIPAK-VPTLLIANKLD-R 118 Query: 125 IAQRN----FYEIYSL--DFKEIVEISAEHDLGTSELHSVIFKIFKQKYP 168 ++ ++ F + S +F EIV +SA++ L + I + P Sbjct: 119 VSDKDSLFPFMQQMSTLREFNEIVPLSAKNTDDIKRLMATIKPFLPEGEP 168 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/129 (29%), Positives = 69/129 (53%), Gaps = 4/129 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VGRPNVGKSTL+N L+G +T ++ TR ++ ++ DT G + + Sbjct: 2 VAIVGRPNVGKSTLMNALVGQKVSITSRKAQTTRHRITGINTLEDAQYIFVDTPGFQ--T 59 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 R + +L +++ +++ S T I+ + F D +++D + +++A NK D Sbjct: 60 RHSGAL-NRSLNRAVTSTLTSVDAILFVIEAGRFGPDDQKVLDLIPAKVPTLLIA-NKLD 117 Query: 326 MVSDKLNLL 334 VSDK +L Sbjct: 118 RVSDKDSLF 126 >gi|225870931|ref|YP_002746878.1| GTP-binding protein Era homolog [Streptococcus equi subsp. equi 4047] gi|254783664|sp|C0MBF0|ERA_STRE4 RecName: Full=GTPase Era gi|225700335|emb|CAW94640.1| GTP-binding protein Era homolog [Streptococcus equi subsp. equi 4047] Length = 298 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 46/146 (31%), Positives = 73/146 (50%), Gaps = 5/146 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKST N ++ +K+AV+ + TR+++ G +DT GI K Sbjct: 7 VAILGRPNVGKSTFLNHVMGQKIAVMSDKAQTTRNKIMGIYTTETEQIVFIDTPGIHKPK 66 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 ++ M + + E +LF++ + D I L+ IP+I+V NK+D Sbjct: 67 -TALGDFMVESAYSTLREVETVLFMVPADEKRGKGDDMIIERLKAARIPVILVINKIDKV 125 Query: 125 IAQRNFYEI----YSLDFKEIVEISA 146 + +I +DFKEIV ISA Sbjct: 126 HPDQLLEQIDDFRSQMDFKEIVPISA 151 Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 38/137 (27%), Positives = 68/137 (49%), Gaps = 5/137 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKST +N ++G + ++ TR+ + + + I DT G+ KP Sbjct: 7 VAILGRPNVGKSTFLNHVMGQKIAVMSDKAQTTRNKIMGIYTTETEQIVFIDTPGIHKPK 66 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +L V+ + ++R ET + ++ A K D I++ + V+L +NK D Sbjct: 67 T---ALGDFMVESAYSTLREVETVLFMVPADEKRGKGDDMIIERLKAARIPVILVINKID 123 Query: 326 MV--SDKLNLLQDLRTK 340 V L + D R++ Sbjct: 124 KVHPDQLLEQIDDFRSQ 140 >gi|291515475|emb|CBK64685.1| tRNA modification GTPase trmE [Alistipes shahii WAL 8301] Length = 451 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 57/182 (31%), Positives = 86/182 (47%), Gaps = 16/182 (8%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI--A 61 +AI GAPNVGKSTL NRL+ ++ A+V G TRD + A I GV+F +DTAGI Sbjct: 221 AVAIAGAPNVGKSTLLNRLLNEERAMVSEIAGTTRDVIEECANIGGVLFRFLDTAGIRPT 280 Query: 62 DGKNCSIAKQMNDQ-TELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 D + +QM Q T +I A +++ ++D+ P F + ++ V NK Sbjct: 281 DDR----LEQMGIQRTMSSIERARIVIHMVDASTLTGPV--PAPDFPLRPGQKLLTVVNK 334 Query: 121 MDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 D A E +V ISA+H G L + + + H ++ N++ Sbjct: 335 TDKAPAAWRLPE-------GVVGISAKHGEGIDALCDALRESVDTEALYHGDPVVSNSRH 387 Query: 181 NE 182 E Sbjct: 388 YE 389 Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 52/177 (29%), Positives = 80/177 (45%), Gaps = 27/177 (15%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 I + + +A+ G PNVGKSTL+NRLL R + +G TRD + N DTA Sbjct: 216 IREGVAVAIAGAPNVGKSTLLNRLLNEERAMVSEIAGTTRDVIEECANIGGVLFRFLDTA 275 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDA---TIPFEKQDLRIVDSVFNTGHA 316 G+R + LEQ ++++M S+ I ++DA T P D + G Sbjct: 276 GIRPTD---DRLEQMGIQRTMSSIERARIVIHMVDASTLTGPVPAPDFPL-----RPGQK 327 Query: 317 VVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 ++ +NK D + A LP+ + IS + GEG+D L ++ E Sbjct: 328 LLTVVNKTD------------KAPAAWRLPE----GVVGISAKHGEGIDALCDALRE 368 >gi|256618548|ref|ZP_05475394.1| tRNA modification GTPase [Enterococcus faecalis ATCC 4200] gi|256598075|gb|EEU17251.1| tRNA modification GTPase [Enterococcus faecalis ATCC 4200] Length = 465 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 46/160 (28%), Positives = 87/160 (54%), Gaps = 7/160 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L++++ A+V + G TRD + + GV ++DTAGI + ++ Sbjct: 231 AIIGRPNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLIDTAGIRETED 290 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD--T 123 + + +++ A+ ++ LIL +++ +T D + K + +I+ NKMD T Sbjct: 291 I-VERIGVERSRKALADSDLILLVLNQSEELTEEDRQLLEA--TKGLKRVILLNKMDLPT 347 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 ++ E+ +EI+ +S + G +L + I +F Sbjct: 348 KLDPNELQELVP--AEEILSVSVLSNTGLDQLEAKIADLF 385 Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 38/129 (29%), Positives = 75/129 (58%), Gaps = 5/129 (3%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L A++GRPNVGKS+L+N LL + + +G TRD + N + P+++ D Sbjct: 222 KILREGLSTAIIGRPNVGKSSLLNHLLREEKAIVTDIAGTTRDVIEEYVNVRGVPLKLID 281 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ I E + V++S +++ + +++L+ + ++D +++++ G Sbjct: 282 TAGIRETEDIVERI---GVERSRKALADSDLILLVLNQSEELTEEDRQLLEA--TKGLKR 336 Query: 318 VLALNKWDM 326 V+ LNK D+ Sbjct: 337 VILLNKMDL 345 >gi|218662615|ref|ZP_03518545.1| tRNA modification GTPase TrmE [Rhizobium etli IE4771] Length = 290 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 80/167 (47%), Gaps = 17/167 (10%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + + I GAPN GKS+L N L ++ +A+V + G TRD L I+G + + DTAG+ + Sbjct: 104 FKVVIAGAPNAGKSSLLNALARRDVAIVTDIAGTTRDVLQVDLDIDGYLVKLYDTAGLRE 163 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + + + + +A+ +A L+L L+D + P D + +P + V K D Sbjct: 164 ADD-RVEMEGVRRARIALRDADLVLLLVDVSDPVIPADL-------DQAVPHVRVGTKKD 215 Query: 123 TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPN 169 + Y++ IS G EL ++I ++ K+++ Sbjct: 216 LIETGSDRYDL---------RISTATGEGLPELRALIGRVVKERFAG 253 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/113 (24%), Positives = 62/113 (54%), Gaps = 3/113 (2%) Query: 192 EGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNH 251 + S+ + I ++ + G PN GKS+L+N L + + +G TRD + + + + Sbjct: 92 DAASAGEIIRDGFKVVIAGAPNAGKSSLLNALARRDVAIVTDIAGTTRDVLQVDLDIDGY 151 Query: 252 PIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDL 304 ++++DTAG+R+ + +E + V+++ ++R + ++L+D + P DL Sbjct: 152 LVKLYDTAGLREAD---DRVEMEGVRRARIALRDADLVLLLVDVSDPVIPADL 201 >gi|317968166|ref|ZP_07969556.1| tRNA modification GTPase TrmE [Synechococcus sp. CB0205] Length = 449 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 44/123 (35%), Positives = 72/123 (58%), Gaps = 2/123 (1%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKS+L N L + A+V + PG TRD + + ++ GV ++DTAGI D + Sbjct: 223 VAIVGRPNVGKSSLLNLLSRSDRAIVTDLPGTTRDLVESELVLKGVPLTLLDTAGIRDTE 282 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + + +++ A+ A ++L L D G D A+ + L + IP ++V+NK D Sbjct: 283 D-RVEQIGIERSRGALQAADVVLLLFDRAQGWLAEDQALLASL-PQGIPHLVVANKADQP 340 Query: 125 IAQ 127 A+ Sbjct: 341 AAE 343 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 38/148 (25%), Positives = 77/148 (52%), Gaps = 4/148 (2%) Query: 163 FKQKYPNHPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINR 222 F+ P + + + + S + + ++G+ + + + L++A+VGRPNVGKS+L+N Sbjct: 181 FEDDLPPLDGQAVASELQAVRSALQELVADGERG-QVLREGLKVAIVGRPNVGKSSLLNL 239 Query: 223 LLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQS 282 L +R + G TRD V K P+ + DTAG+R + +EQ +++S + Sbjct: 240 LSRSDRAIVTDLPGTTRDLVESELVLKGVPLTLLDTAGIRDTE---DRVEQIGIERSRGA 296 Query: 283 VRTCETTIVLLDATIPFEKQDLRIVDSV 310 ++ + ++L D + +D ++ S+ Sbjct: 297 LQAADVVLLLFDRAQGWLAEDQALLASL 324 >gi|83815382|ref|YP_444209.1| tRNA modification GTPase TrmE [Salinibacter ruber DSM 13855] gi|123529876|sp|Q2S6H2|MNME_SALRD RecName: Full=tRNA modification GTPase mnmE gi|83756776|gb|ABC44889.1| tRNA modification GTPase TrmE [Salinibacter ruber DSM 13855] Length = 461 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 44/120 (36%), Positives = 64/120 (53%), Gaps = 3/120 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + I G PN GKSTL N LV A+V PG TRD + +A I GV+F VDTAG+ D Sbjct: 222 VVIGGRPNAGKSTLLNALVGHDRAIVSETPGTTRDEIEAEAEIEGVLFRFVDTAGLRDTA 281 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKK--NIPIIIVSNKMD 122 + A+ + TE +I EA ++ +L D G+ + A L ++ +++ NK D Sbjct: 282 DEIEAEGVRRATE-SIEEADVLFYLYDLTVGLDSQEIAFLQDLADDGSDVQPVVIGNKAD 340 Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 36/134 (26%), Positives = 68/134 (50%), Gaps = 5/134 (3%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 + + +++ + GRPN GKSTL+N L+G++R + G TRD + + D Sbjct: 214 EKLKDGVQVVIGGRPNAGKSTLLNALVGHDRAIVSETPGTTRDEIEAEAEIEGVLFRFVD 273 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R + + +E + V+++ +S+ + L D T+ + Q++ + + + G V Sbjct: 274 TAGLRDTA---DEIEAEGVRRATESIEEADVLFYLYDLTVGLDSQEIAFLQDLADDGSDV 330 Query: 318 --VLALNKWDMVSD 329 V+ NK D D Sbjct: 331 QPVVIGNKADRAPD 344 >gi|94312541|ref|YP_585751.1| tRNA modification GTPase TrmE [Cupriavidus metallidurans CH34] gi|205415800|sp|Q1LH94|MNME_RALME RecName: Full=tRNA modification GTPase mnmE gi|93356393|gb|ABF10482.1| GTPase [Cupriavidus metallidurans CH34] Length = 475 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 44/126 (34%), Positives = 68/126 (53%), Gaps = 7/126 (5%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 ++ + G PNVGKS+L N L +A+V G TRDR+ I+G+ +I+DTAG+ D Sbjct: 222 SVVLAGQPNVGKSSLLNALAGSDLAIVTPIAGTTRDRVRETIQIDGIPLHIIDTAGLRDD 281 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDS----KAGITPYDHAITSFLRKK---NIPIII 116 + + ++T AI A ++L LID+ + GI+ D I L + PI+ Sbjct: 282 AADEVERIGIERTWEAIRHADIVLHLIDAADYIEHGISETDDHIDDRLSGQLPPGSPIVR 341 Query: 117 VSNKMD 122 V NK+D Sbjct: 342 VINKID 347 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 64/265 (24%), Positives = 124/265 (46%), Gaps = 27/265 (10%) Query: 155 LHSVIFKIFKQK--------YPNHPLEMIE-NNKRNEESP-KENITSEGKSSVKN--ISK 202 +H+++ K+ + +P ++ +E +N R + + +E++ K + + + + Sbjct: 160 IHALVEKVIHLRMLVEATLDFPEEEIDFLEASNARGQLTRIREDLAGVLKQARQGSLLRE 219 Query: 203 PLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMR 262 L + + G+PNVGKS+L+N L G + + +G TRD V + P+ I DTAG+R Sbjct: 220 GLSVVLAGQPNVGKSSLLNALAGSDLAIVTPIAGTTRDRVRETIQIDGIPLHIIDTAGLR 279 Query: 263 KPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE----KQDLRIVDSVFNT---GH 315 + + +E+ ++++ +++R + + L+DA E + D I D + G Sbjct: 280 DDA--ADEVERIGIERTWEAIRHADIVLHLIDAADYIEHGISETDDHIDDRLSGQLPPGS 337 Query: 316 AVVLALNKWDMVSD--KLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 +V +NK D+ + + N P +I+ IS RTG G+ DLM S L Sbjct: 338 PIVRVINKIDLAPSVGAMGFGGNRPHVVAANGPNPTEIW---ISARTGAGI-DLMRSELL 393 Query: 374 INKLWKTRITTSYLNSWLQKTQLQN 398 W++ ++L L+N Sbjct: 394 RLIGWQSGNEGAFLARERHLIALRN 418 >gi|145630099|ref|ZP_01785881.1| tRNA modification GTPase [Haemophilus influenzae R3021] gi|144984380|gb|EDJ91803.1| tRNA modification GTPase [Haemophilus influenzae R3021] Length = 452 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 44/150 (29%), Positives = 76/150 (50%), Gaps = 10/150 (6%) Query: 167 YPNHPLEM-----IENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLIN 221 +P+ ++ IE N R + EN+ SE K + + +++ + GRPN GKS+L+N Sbjct: 174 FPDEEIDFLADGKIEANLRGIINQLENVRSEAKQG-SILREGMKVVIAGRPNAGKSSLLN 232 Query: 222 RLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQ 281 L G + +G TRD + + P+ I DTAG+R T+ +E+ + ++ Sbjct: 233 ALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDA---TDEVERIGISRAWT 289 Query: 282 SVRTCETTIVLLDATIPFEKQDLRIVDSVF 311 + + I++LD++ P E DL V S F Sbjct: 290 EIEQADRIILMLDSSDP-ESVDLTKVRSEF 318 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/143 (31%), Positives = 72/143 (50%), Gaps = 15/143 (10%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + I G PN GKS+L N L ++ A+V + G TRD L I+G+ +I+DTAG+ D Sbjct: 217 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAT 276 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAIT----SFLRK--KNIPIIIVS 118 + + + + I +A I+ ++DS P +T FL K +P+ IV Sbjct: 277 D-EVERIGISRAWTEIEQADRIILMLDSS---DPESVDLTKVRSEFLAKLPSTLPVTIVR 332 Query: 119 NKMD-----TRIAQRNFYEIYSL 136 NK+D +++ Y+I SL Sbjct: 333 NKIDLNGEQASESEQGGYQIISL 355 >gi|238019235|ref|ZP_04599661.1| hypothetical protein VEIDISOL_01099 [Veillonella dispar ATCC 17748] gi|237863934|gb|EEP65224.1| hypothetical protein VEIDISOL_01099 [Veillonella dispar ATCC 17748] Length = 299 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 49/178 (27%), Positives = 86/178 (48%), Gaps = 5/178 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTL N L+ K+A+V + TR+R+ +DT G+ K Sbjct: 12 VAVVGRPNVGKSTLINALIGDKIAIVSDKAQTTRNRIICVYTDEAKQIVFMDTPGVHKPK 71 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + + M D ++ E +LF++ P D+ I L++ +P+ +V NK+DT Sbjct: 72 H-KLGEFMVDAAIESLKETEAVLFVVAGNEKRGPGDNFIIEQLKRVKVPVFLVVNKIDTL 130 Query: 125 IAQRNFYEIYSLD----FKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 + I S F ++ ISA+ +E+ +V+ + + P +MI + Sbjct: 131 KKEELLEAIVSYQDAYPFAGVIPISAKDKENLNEVLNVLEETLPEGPQYFPEDMITDQ 188 Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 59/120 (49%), Gaps = 3/120 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +AVVGRPNVGKSTLIN L+G + ++ TR+ + + + I DT G+ KP Sbjct: 12 VAVVGRPNVGKSTLINALIGDKIAIVSDKAQTTRNRIICVYTDEAKQIVFMDTPGVHKPK 71 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + V +++S++ E + ++ D I++ + V L +NK D Sbjct: 72 H---KLGEFMVDAAIESLKETEAVLFVVAGNEKRGPGDNFIIEQLKRVKVPVFLVVNKID 128 >gi|229543819|ref|ZP_04432878.1| GTP-binding protein Era [Bacillus coagulans 36D1] gi|229324958|gb|EEN90634.1| GTP-binding protein Era [Bacillus coagulans 36D1] Length = 302 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 46/146 (31%), Positives = 74/146 (50%), Gaps = 5/146 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 I+I+G PNVGKST N++V +K+A++ + P TR+++ G + +DT GI K Sbjct: 11 ISIIGRPNVGKSTFINQVVGQKIAIMSDKPQTTRNKIQGVYTADDAQMIFIDTPGIHKPK 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + M + E LILF+++++ D I L+ P+ +V NK+D Sbjct: 71 H-KLGDFMVKSATDTLKEVDLILFMVNAEEKRGRGDEYIIELLKHVRTPVFLVINKIDLV 129 Query: 125 IAQR--NFYEIYS--LDFKEIVEISA 146 F E Y F+E+V ISA Sbjct: 130 HPDDLLAFIEQYKDLYPFREVVPISA 155 Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 32/122 (26%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 I+++GRPNVGKST IN+++G + + TR+ + + + + DT G+ KP Sbjct: 11 ISIIGRPNVGKSTFINQVVGQKIAIMSDKPQTTRNKIQGVYTADDAQMIFIDTPGIHKPK 70 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L VK + +++ + + +++A + D I++ + + V L +NK D Sbjct: 71 H---KLGDFMVKSATDTLKEVDLILFMVNAEEKRGRGDEYIIELLKHVRTPVFLVINKID 127 Query: 326 MV 327 +V Sbjct: 128 LV 129 >gi|152971422|ref|YP_001336531.1| GTP-binding protein Era [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238896017|ref|YP_002920753.1| GTP-binding protein Era [Klebsiella pneumoniae NTUH-K2044] gi|262040302|ref|ZP_06013553.1| GTP-binding protein Era [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|330007687|ref|ZP_08306026.1| ribosome biogenesis GTPase Era [Klebsiella sp. MS 92-3] gi|189037651|sp|A6TCI0|ERA_KLEP7 RecName: Full=GTPase Era gi|150956271|gb|ABR78301.1| GTP-binding protein Era [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238548335|dbj|BAH64686.1| GTP-binding protein [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259042411|gb|EEW43431.1| GTP-binding protein Era [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328535368|gb|EGF61850.1| ribosome biogenesis GTPase Era [Klebsiella sp. MS 92-3] Length = 301 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 51/183 (27%), Positives = 88/183 (48%), Gaps = 20/183 (10%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYG-------QAIINGVIFNIVDT 57 +AIVG PNVGKSTL N+L+ +K+++ TR R+ G QAI VDT Sbjct: 11 VAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGPYQAI-------YVDT 63 Query: 58 AGIADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIV 117 G+ + +I + MN +I + L++F+++ T D + + LR P+I+ Sbjct: 64 PGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRW-TQDDEMVLNKLRDAKAPVILA 122 Query: 118 SNKMDTRIAQRNF-----YEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPL 172 NK+D + + + ++F +IV ISAE + +++ K + + P Sbjct: 123 VNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGTNVDTIAAIVRKHLPEAIHHFPE 182 Query: 173 EMI 175 + I Sbjct: 183 DYI 185 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 51/167 (30%), Positives = 85/167 (50%), Gaps = 9/167 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS-VSISWNWKNHPIEIFDTAGMRKP 264 +A+VGRPNVGKSTL+N+LLG +T ++ TR V I I + DT G+ Sbjct: 11 VAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGPYQAIYV-DTPGLHME 69 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 + ++ + K + S+ E I +++ T + + D +++ + + V+LA+NK Sbjct: 70 EK--RAINRLMNKAASSSIGDVELVIFVVEGT-RWTQDDEMVLNKLRDAKAPVILAVNKV 126 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSV 371 D V +K +LL L+ A Q+ + I IS TG +D + V Sbjct: 127 DNVQEKADLLPHLQFLA----SQMNFLDIVPISAETGTNVDTIAAIV 169 >gi|83748442|ref|ZP_00945464.1| Era [Ralstonia solanacearum UW551] gi|207725214|ref|YP_002255610.1| GTP-binding protein [Ralstonia solanacearum MolK2] gi|207743589|ref|YP_002259981.1| gtp-binding protein era homolog [Ralstonia solanacearum IPO1609] gi|83724853|gb|EAP72009.1| Era [Ralstonia solanacearum UW551] gi|206590448|emb|CAQ37410.1| gtp-binding protein era homolog [Ralstonia solanacearum MolK2] gi|206594988|emb|CAQ61915.1| gtp-binding protein era homolog [Ralstonia solanacearum IPO1609] Length = 315 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 77/153 (50%), Gaps = 12/153 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N LV +K+++ TR R+ G + F VDT G Sbjct: 27 VAIVGRPNVGKSTLMNALVGQKVSITSRKAQTTRHRITGIQTTDDAQFVFVDTPGFQTRH 86 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 ++ + +N + +LF++++ P D + S L ++ P+I++ NK+D R Sbjct: 87 ATALNRSLNRAVTSTLTSVDAVLFVVEA-GRYGPDDAKVLSLLPRET-PVILIVNKVD-R 143 Query: 125 IAQRNFYEIYSL---------DFKEIVEISAEH 148 + E+ ++ FKEIV +SA++ Sbjct: 144 LDAYTRAEMVAVFLQDMAQVFPFKEIVPMSAKN 176 Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust. Identities = 32/120 (26%), Positives = 61/120 (50%), Gaps = 4/120 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VGRPNVGKSTL+N L+G +T ++ TR ++ + DT G + + Sbjct: 27 VAIVGRPNVGKSTLMNALVGQKVSITSRKAQTTRHRITGIQTTDDAQFVFVDTPGFQ--T 84 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 R +L +++ +++ S T ++ + + D +++ S+ V+L +NK D Sbjct: 85 RHATAL-NRSLNRAVTSTLTSVDAVLFVVEAGRYGPDDAKVL-SLLPRETPVILIVNKVD 142 >gi|212550703|ref|YP_002309020.1| GTP-binding protein Era [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212548941|dbj|BAG83609.1| GTP-binding protein Era [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 300 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 55/170 (32%), Positives = 90/170 (52%), Gaps = 10/170 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIV--DTAGIAD 62 + IVG PNVGKSTL N LV K++++ + TR R+ G I+N IV DT GI Sbjct: 14 VNIVGNPNVGKSTLMNTLVGGKLSIITSKAQTTRHRIIG--IVNKPNVQIVFSDTPGILR 71 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 N + K+M + +E A+ +A ++L++ D K + D + +++ N+PI+++ NK+D Sbjct: 72 P-NYKLQKKMLNFSESALEDADILLYVSDIKNQLVKTDFFLKK-MQQTNLPILLILNKID 129 Query: 123 ----TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYP 168 ++ Q+ L EI+ ISA + T L I K+ + P Sbjct: 130 LFNQKQLEQKVIEYHKILPNAEIIPISAINQFNTDYLQKRIEKLLPESPP 179 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 39/136 (28%), Positives = 66/136 (48%), Gaps = 4/136 (2%) Query: 195 SSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIE 254 S ++N K + +VG PNVGKSTL+N L+G + S++ TR + N N I Sbjct: 3 SDIENKHKSGFVNIVGNPNVGKSTLMNTLVGGKLSIITSKAQTTRHRIIGIVNKPNVQIV 62 Query: 255 IFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTG 314 DT G+ +P+ L++K + S ++ + + + D K D + + T Sbjct: 63 FSDTPGILRPNY---KLQKKMLNFSESALEDADILLYVSDIKNQLVKTDF-FLKKMQQTN 118 Query: 315 HAVVLALNKWDMVSDK 330 ++L LNK D+ + K Sbjct: 119 LPILLILNKIDLFNQK 134 >gi|15639539|ref|NP_218989.1| tRNA modification GTPase TrmE [Treponema pallidum subsp. pallidum str. Nichols] gi|189025778|ref|YP_001933550.1| tRNA modification GTPase TrmE [Treponema pallidum subsp. pallidum SS14] gi|6647879|sp|O83561|MNME_TREPA RecName: Full=tRNA modification GTPase mnmE gi|226704786|sp|B2S3E2|MNME_TREPS RecName: Full=tRNA modification GTPase mnmE gi|3322842|gb|AAC65535.1| thiophene and furan oxidation protein (thdF) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018353|gb|ACD70971.1| thiophene and furan oxidation protein [Treponema pallidum subsp. pallidum SS14] gi|291059927|gb|ADD72662.1| tRNA modification GTPase TrmE [Treponema pallidum subsp. pallidum str. Chicago] gi|313505085|gb|ADR64252.1| TrmE [Treponema pallidum subsp. pallidum str. Mexico A] gi|313505093|gb|ADR64259.1| TrmE [Treponema pallidum subsp. pallidum] Length = 495 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 63/118 (53%), Gaps = 4/118 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 I + G PN GKS+LFN L+ + A+V + PG TRD L ++G+ + DTAG+ Sbjct: 226 IVLGGCPNAGKSSLFNALLGQDRAIVSSVPGTTRDWLEADLDLSGIPVRLCDTAGLRVTD 285 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 N I Q ++E + A + ++I+ +AG+ D +FL +P+++V D Sbjct: 286 N-PIEAQGVVRSEQLLQGADCVFYIINGRAGVQAAD---CAFLSDCAVPLVVVVTHND 339 Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 31/101 (30%), Positives = 54/101 (53%), Gaps = 5/101 (4%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 +RI + G PN GKS+L N LLG +R + S G TRD + + P+ + DTAG+ Sbjct: 224 VRIVLGGCPNAGKSSLFNALLGQDRAIVSSVPGTTRDWLEADLDLSGIPVRLCDTAGL-- 281 Query: 264 PSRITES-LEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 R+T++ +E + V +S Q ++ + +++ + D Sbjct: 282 --RVTDNPIEAQGVVRSEQLLQGADCVFYIINGRAGVQAAD 320 >gi|325478364|gb|EGC81479.1| ribosome biogenesis GTPase Era [Anaerococcus prevotii ACS-065-V-Col13] Length = 293 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 52/154 (33%), Positives = 85/154 (55%), Gaps = 16/154 (10%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIING----VIFNIVDTAGI 60 +++VG NVGKSTL +++ +K++++ N TRD++ Q I N +IF +DT GI Sbjct: 7 VSVVGRANVGKSTLMEKILGEKISIISNKAQTTRDKI--QIIYNDEDSQIIF--LDTPGI 62 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 +N + +++ +E ++ E+ +I F++D I D I L K +P I++ NK Sbjct: 63 QTPRN-KLQERLLTFSEESLAESDIITFVVDDSEEIGRIDSEILDMLGKIKLPKILLINK 121 Query: 121 MD----TRIAQ-RNFYEIYSLDFKEIVEISAEHD 149 D RIA+ R + Y DF I+EISA D Sbjct: 122 TDLADSERIAKIRANFRAY--DFDRIIEISALED 153 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/123 (27%), Positives = 65/123 (52%), Gaps = 3/123 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 ++VVGR NVGKSTL+ ++LG + +++ TRD + I +N ++ I DT G++ P Sbjct: 7 VSVVGRANVGKSTLMEKILGEKISIISNKAQTTRDKIQIIYNDEDSQIIFLDTPGIQTPR 66 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L+++ + S +S+ + ++D + + D I+D + +L +NK D Sbjct: 67 N---KLQERLLTFSEESLAESDIITFVVDDSEEIGRIDSEILDMLGKIKLPKILLINKTD 123 Query: 326 MVS 328 + Sbjct: 124 LAD 126 >gi|302035744|ref|YP_003796066.1| tRNA modification GTPase [Candidatus Nitrospira defluvii] gi|300603808|emb|CBK40140.1| tRNA modification GTPase [Candidatus Nitrospira defluvii] Length = 476 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 40/123 (32%), Positives = 69/123 (56%), Gaps = 5/123 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKS+L+N LL +R + G TRD + N P+ +FDTAG+R Sbjct: 240 VAILGRPNVGKSSLMNALLRSDRAIVTPIPGTTRDLLEEVVNIHGIPVRLFDTAGIRTTD 299 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + +E + +++S + + ++LLD++ P + DL ++ + +L LNK D Sbjct: 300 ---DPVETEGIRRSHLAWEDADLALILLDSSQPMLESDLLLLRR--SEAARALLVLNKCD 354 Query: 326 MVS 328 + S Sbjct: 355 LPS 357 Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 50/158 (31%), Positives = 80/158 (50%), Gaps = 6/158 (3%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 +AI+G PNVGKS+L N L++ A+V PG TRD L I+G+ + DTAGI Sbjct: 239 AVAILGRPNVGKSSLMNALLRSDRAIVTPIPGTTRDLLEEVVNIHGIPVRLFDTAGIRTT 298 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD- 122 + + + ++ LA +A L L L+DS + D + R + ++V NK D Sbjct: 299 DD-PVETEGIRRSHLAWEDADLALILLDSSQPMLESD--LLLLRRSEAARALLVLNKCDL 355 Query: 123 -TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVI 159 +RI++ + + + + EISA+ +G L I Sbjct: 356 PSRISKEDLTRVCPVSAG-LFEISAKMHIGLDGLRDAI 392 >gi|294505869|ref|YP_003569927.1| tRNA modification GTPase trmE [Salinibacter ruber M8] gi|294342197|emb|CBH22975.1| tRNA modification GTPase trmE [Salinibacter ruber M8] Length = 461 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 44/120 (36%), Positives = 64/120 (53%), Gaps = 3/120 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + I G PN GKSTL N LV A+V PG TRD + +A I GV+F VDTAG+ D Sbjct: 222 VVIGGRPNAGKSTLLNALVGHDRAIVSETPGTTRDEIEAEAEIEGVLFRFVDTAGLRDTA 281 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKK--NIPIIIVSNKMD 122 + A+ + TE +I EA ++ +L D G+ + A L ++ +++ NK D Sbjct: 282 DEIEAEGVRRATE-SIEEADVLFYLYDLTVGLDSQEIAFLQDLAADGSDVQPVVIGNKAD 340 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 41/152 (26%), Positives = 75/152 (49%), Gaps = 9/152 (5%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 + + +++ + GRPN GKSTL+N L+G++R + G TRD + + D Sbjct: 214 EKLKDGVQVVIGGRPNAGKSTLLNALVGHDRAIVSETPGTTRDEIEAEAEIEGVLFRFVD 273 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R + + +E + V+++ +S+ + L D T+ + Q++ + + G V Sbjct: 274 TAGLRDTA---DEIEAEGVRRATESIEEADVLFYLYDLTVGLDSQEIAFLQDLAADGSDV 330 Query: 318 --VLALNKWDMVSD----KLNLLQDLRTKAIK 343 V+ NK D D L+ L L+ A+K Sbjct: 331 QPVVIGNKADRAPDLPVATLDGLTSLKLSALK 362 >gi|33519494|ref|NP_878326.1| tRNA modification GTPase TrmE [Candidatus Blochmannia floridanus] gi|46577399|sp|Q7VQV3|MNME_BLOFL RecName: Full=tRNA modification GTPase mnmE gi|33517157|emb|CAD83539.1| GTPase for tRNA modification and thiophene and furan oxidation [Candidatus Blochmannia floridanus] Length = 474 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 37/97 (38%), Positives = 55/97 (56%), Gaps = 4/97 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + I G PN GKS+LFN L+ K A++ N G TRD L+ +NG+ F+I+DTAG Sbjct: 222 VVIAGKPNAGKSSLFNSLINKDRAIISNISGTTRDILHEYIQLNGIAFHIIDTAGFKKNS 281 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDH 101 I +++ +++A IL++IDS T Y H Sbjct: 282 TNEIELIGMQKSKYELSKADHILWVIDS----TDYSH 314 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 28/93 (30%), Positives = 49/93 (52%), Gaps = 2/93 (2%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 +++ + G+PN GKS+L N L+ +R + + SG TRD + I DTAG +K Sbjct: 220 IKVVIAGKPNAGKSSLFNSLINKDRAIISNISGTTRDILHEYIQLNGIAFHIIDTAGFKK 279 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDAT 296 S T +E ++KS + + + ++D+T Sbjct: 280 NS--TNEIELIGMQKSKYELSKADHILWVIDST 310 >gi|254436182|ref|ZP_05049689.1| tRNA modification GTPase TrmE [Nitrosococcus oceani AFC27] gi|207089293|gb|EDZ66565.1| tRNA modification GTPase TrmE [Nitrosococcus oceani AFC27] Length = 431 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 40/118 (33%), Positives = 66/118 (55%), Gaps = 2/118 (1%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + + G PNVGKS+L NRL + A+V + PG TRD L I+G+ ++ DTAG+ + K Sbjct: 200 VVLAGRPNVGKSSLHNRLAGFEAAIVTDVPGTTRDLLRENITIDGLPIHLSDTAGLHNSK 259 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + + M E I+ H +L + D ++G+T + AI L ++ ++ NK+D Sbjct: 260 DTIEQEGMRRTREELIHADH-VLLVADDQSGLTEAEQAILDEL-PDDVTYTLIFNKID 315 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/166 (24%), Positives = 79/166 (47%), Gaps = 16/166 (9%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + +R+ + GRPNVGKS+L NRL G+ + G TRD + + PI + DTA Sbjct: 194 LREGVRVVLAGRPNVGKSSLHNRLAGFEAAIVTDVPGTTRDLLRENITIDGLPIHLSDTA 253 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+ +++EQ+ ++++ + + + +++ D + + I+D + + L Sbjct: 254 GLHNSK---DTIEQEGMRRTREELIHADHVLLVADDQSGLTEAEQAILDELPDD-VTYTL 309 Query: 320 ALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLD 365 NK D+ ++L+ A++ +S TG G+D Sbjct: 310 IFNKIDLSGAPAGRWEELQGIALR------------LSALTGAGMD 343 >gi|169836568|ref|ZP_02869756.1| GTP-binding protein [candidate division TM7 single-cell isolate TM7a] Length = 86 Score = 67.0 bits (162), Expect = 6e-09, Method: Composition-based stats. Identities = 32/80 (40%), Positives = 51/80 (63%) Query: 32 NHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNCSIAKQMNDQTELAINEAHLILFLID 91 + PG+TRDRLY + +G F +VDT G+ + ++ Q ++AI+EA +I+FL+D Sbjct: 3 DEPGVTRDRLYREMEWSGKEFILVDTGGLEPRTEDFMMGKIKQQAQVAIDEADVIIFLVD 62 Query: 92 SKAGITPYDHAITSFLRKKN 111 KAGIT D + + LRK++ Sbjct: 63 GKAGITGLDEDVATVLRKQD 82 >gi|312112752|ref|YP_003991068.1| tRNA modification GTPase TrmE [Geobacillus sp. Y4.1MC1] gi|311217853|gb|ADP76457.1| tRNA modification GTPase TrmE [Geobacillus sp. Y4.1MC1] Length = 461 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 39/129 (30%), Positives = 71/129 (55%), Gaps = 5/129 (3%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L ++GRPNVGKS+L+N L+ N+ + G TRD + N + P+ + D Sbjct: 218 KILREGLATVIIGRPNVGKSSLLNALVHENKAIVTDIPGTTRDVIEEYVNVRGVPLRLID 277 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ I E + V++S Q ++ + +++L+ P +D ++ D V G Sbjct: 278 TAGIRETEDIVERI---GVERSWQMLKEADLILLVLNYHEPLTAEDEKLFDMV--KGMDF 332 Query: 318 VLALNKWDM 326 ++ +NK D+ Sbjct: 333 IVIVNKTDL 341 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/159 (29%), Positives = 81/159 (50%), Gaps = 7/159 (4%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 I+G PNVGKS+L N LV + A+V + PG TRD + + GV ++DTAGI + ++ Sbjct: 228 IIGRPNVGKSSLLNALVHENKAIVTDIPGTTRDVIEEYVNVRGVPLRLIDTAGIRETEDI 287 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD--TR 124 + + +++ + EA LIL +++ +T D + F K + I++ NK D Sbjct: 288 -VERIGVERSWQMLKEADLILLVLNYHEPLTAEDEKL--FDMVKGMDFIVIVNKTDLPQH 344 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 I ++ + I+ S H+ G +L + I +F Sbjct: 345 IDMDRVKQLAG--GRPIITTSLLHEKGIEDLETAISNMF 381 >gi|170762293|ref|YP_001752575.1| GTP-binding protein Era [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|186701592|ref|ZP_02553723.2| GTP-binding protein Era [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|13959363|sp|Q9PPZ9|ERA_UREPA RecName: Full=GTPase Era gi|189037684|sp|B1AJD1|ERA_UREP2 RecName: Full=GTPase Era gi|168827870|gb|ACA33132.1| GTP-binding protein Era [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|186700821|gb|EDU19103.1| GTP-binding protein Era [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 300 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 50/159 (31%), Positives = 88/159 (55%), Gaps = 11/159 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYG--QAIINGVIFNIVDTAGIAD 62 +AIVG PNVGKSTL N ++KKK++++ N P TR+ + + + +IF DT G + Sbjct: 8 VAIVGKPNVGKSTLINAIMKKKVSIISNKPQTTRNAVKEIYEDDESAIIF--TDTPGFHE 65 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLR---KKNIPIIIVSN 119 N + +N + E++ EA++ILF+ + D I + ++ K+NI ++I Sbjct: 66 PSN-KLDLFLNHEIEISYKEANVILFVTTMDKELDANDFEIINLIKEANKENIILVISKA 124 Query: 120 KM---DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 +M +I +R + + FK++V+ISA H + +L Sbjct: 125 EMAKNQDQIDERIHFLKKHIAFKDVVQISALHVINIDKL 163 Score = 44.3 bits (103), Expect = 0.041, Method: Compositional matrix adjust. Identities = 36/157 (22%), Positives = 76/157 (48%), Gaps = 16/157 (10%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VG+PNVGKSTLIN ++ + ++ TR++V + I DT G +PS Sbjct: 8 VAIVGKPNVGKSTLINAIMKKKVSIISNKPQTTRNAVKEIYEDDESAIIFTDTPGFHEPS 67 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATI--PFEKQDLRIVDSVFNTGHA-VVLALN 322 + ++ S + E ++L T+ + D I++ + ++L ++ Sbjct: 68 NKLDLFLNHEIEISYK-----EANVILFVTTMDKELDANDFEIINLIKEANKENIILVIS 122 Query: 323 KWDM------VSDKLNLLQDLRTKAIKNLPQIGDIYI 353 K +M + ++++ L+ + A K++ QI +++ Sbjct: 123 KAEMAKNQDQIDERIHFLK--KHIAFKDVVQISALHV 157 >gi|13358054|ref|NP_078328.1| GTP-binding protein [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|6899489|gb|AAF30903.1|AE002147_4 GTP-binding protein [Ureaplasma parvum serovar 3 str. ATCC 700970] Length = 304 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 51/160 (31%), Positives = 88/160 (55%), Gaps = 13/160 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRD---RLYGQAIINGVIFNIVDTAGIA 61 +AIVG PNVGKSTL N ++KKK++++ N P TR+ +Y + +IF DT G Sbjct: 12 VAIVGKPNVGKSTLINAIMKKKVSIISNKPQTTRNAVKEIYEDD-ESAIIF--TDTPGFH 68 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLR---KKNIPIIIVS 118 + N + +N + E++ EA++ILF+ + D I + ++ K+NI ++I Sbjct: 69 EPSN-KLDLFLNHEIEISYKEANVILFVTTMDKELDANDFEIINLIKEANKENIILVISK 127 Query: 119 NKM---DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 +M +I +R + + FK++V+ISA H + +L Sbjct: 128 AEMAKNQDQIDERIHFLKKHIAFKDVVQISALHVINIDKL 167 Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust. Identities = 36/157 (22%), Positives = 76/157 (48%), Gaps = 16/157 (10%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VG+PNVGKSTLIN ++ + ++ TR++V + I DT G +PS Sbjct: 12 VAIVGKPNVGKSTLINAIMKKKVSIISNKPQTTRNAVKEIYEDDESAIIFTDTPGFHEPS 71 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATI--PFEKQDLRIVDSVFNTGHA-VVLALN 322 + ++ S + E ++L T+ + D I++ + ++L ++ Sbjct: 72 NKLDLFLNHEIEISYK-----EANVILFVTTMDKELDANDFEIINLIKEANKENIILVIS 126 Query: 323 KWDM------VSDKLNLLQDLRTKAIKNLPQIGDIYI 353 K +M + ++++ L+ + A K++ QI +++ Sbjct: 127 KAEMAKNQDQIDERIHFLK--KHIAFKDVVQISALHV 161 >gi|114331754|ref|YP_747976.1| GTP-binding protein Era [Nitrosomonas eutropha C91] gi|122313495|sp|Q0AF71|ERA_NITEC RecName: Full=GTPase Era gi|114308768|gb|ABI60011.1| GTP-binding protein Era [Nitrosomonas eutropha C91] Length = 296 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 51/172 (29%), Positives = 85/172 (49%), Gaps = 11/172 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 I+IVG PNVGKSTL N L+K+K+++ TR R++G F VDT G Sbjct: 11 ISIVGRPNVGKSTLLNHLIKQKISITSRKAQTTRHRIHGILTDVQSQFIFVDTPGFQMRH 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD-- 122 + + MN ++ + +ILF++++ + + R N+P+I+V NK+D Sbjct: 71 RSQLNQVMNRVVLQSMQDVDVILFVLEAGRFGREDEQVLEQLPR--NLPVILVINKIDLL 128 Query: 123 -TRIAQRNFYEIYS--LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHP 171 ++ F + + DF +IV +SA + S+L VI + P +P Sbjct: 129 PDKLQLLPFMQKMADLFDFADIVPVSALQNRQLSDLTEVI----RHYLPENP 176 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 42/131 (32%), Positives = 71/131 (54%), Gaps = 8/131 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAG--MRK 263 I++VGRPNVGKSTL+N L+ +T ++ TR + DT G MR Sbjct: 11 ISIVGRPNVGKSTLLNHLIKQKISITSRKAQTTRHRIHGILTDVQSQFIFVDTPGFQMRH 70 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 S++ + + + V +SMQ V + + +L+A F ++D ++++ + V+L +NK Sbjct: 71 RSQLNQVM-NRVVLQSMQDV---DVILFVLEAG-RFGREDEQVLEQL-PRNLPVILVINK 124 Query: 324 WDMVSDKLNLL 334 D++ DKL LL Sbjct: 125 IDLLPDKLQLL 135 >gi|186475607|ref|YP_001857077.1| GTP-binding protein Era [Burkholderia phymatum STM815] gi|184192066|gb|ACC70031.1| GTP-binding protein Era [Burkholderia phymatum STM815] Length = 287 Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 44/150 (29%), Positives = 79/150 (52%), Gaps = 9/150 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N LV +K+++ TR R+ G ++ + VDT G Sbjct: 2 VAIVGRPNVGKSTLMNALVGQKVSITSRKAQTTRHRITGINTLDDAQYIFVDTPGFQTRH 61 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + ++ + +N + +LF+I++ P D + + + P ++++NK+D R Sbjct: 62 SGALNRSLNRAVTSTLTSVDAVLFVIEA-GRFGPDDQKVLDLI-PASAPTLLIANKLD-R 118 Query: 125 IAQRN----FYEIYSL--DFKEIVEISAEH 148 ++ ++ F + S +FKEIV +SA + Sbjct: 119 VSDKDSLFPFMQQMSAAREFKEIVPLSARN 148 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 37/129 (28%), Positives = 69/129 (53%), Gaps = 4/129 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VGRPNVGKSTL+N L+G +T ++ TR ++ + DT G + + Sbjct: 2 VAIVGRPNVGKSTLMNALVGQKVSITSRKAQTTRHRITGINTLDDAQYIFVDTPGFQ--T 59 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 R + +L +++ +++ S T ++ + F D +++D + + +++A NK D Sbjct: 60 RHSGAL-NRSLNRAVTSTLTSVDAVLFVIEAGRFGPDDQKVLDLIPASAPTLLIA-NKLD 117 Query: 326 MVSDKLNLL 334 VSDK +L Sbjct: 118 RVSDKDSLF 126 >gi|40063333|gb|AAR38151.1| tRNA modification GTPase TrmE [uncultured marine bacterium 578] Length = 449 Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 46/131 (35%), Positives = 71/131 (54%), Gaps = 8/131 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI G PN GKS+L N L K+ A+V + G TRD L I+G+ +I+DTAG+ + Sbjct: 221 VAIAGKPNAGKSSLLNALTKQPSAIVTDIAGTTRDVLKETIHIDGMPLHIIDTAGLHNSN 280 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRK--KNIPIIIVSNKMD 122 N I ++ + IN A ++L + D+K + + S L + KN PII + NK+D Sbjct: 281 NI-IEQEGIRRAHTEINNADVVLLVYDAKDKLADF-----SILPEAVKNKPIICIRNKID 334 Query: 123 TRIAQRNFYEI 133 A+ E+ Sbjct: 335 LLKAKAEIKEV 345 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 46/208 (22%), Positives = 97/208 (46%), Gaps = 35/208 (16%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 L +A+ G+PN GKS+L+N L + +G TRD + + + P+ I DTAG+ Sbjct: 219 LYVAIAGKPNAGKSSLLNALTKQPSAIVTDIAGTTRDVLKETIHIDGMPLHIIDTAGLHN 278 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIV-DSVFNTGHAVVLALN 322 + I +EQ+ ++++ + + +++ DA D I+ ++V N ++ N Sbjct: 279 SNNI---IEQEGIRRAHTEINNADVVLLVYDAKDKL--ADFSILPEAVKNK--PIICIRN 331 Query: 323 KWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEI-------- 374 K D++ K + K +K+ ++ ++S + G+G+D L ++ E Sbjct: 332 KIDLLKAKAEI------KEVKHQTEV------SLSAKNGDGIDLLRQALSEAAGYKPDGE 379 Query: 375 -------NKLWKTRITTSYLNSWLQKTQ 395 + +T +Y+NS +++ + Sbjct: 380 GVFLARKRHILSIELTLNYVNSAIEQLE 407 >gi|42525230|ref|NP_970610.1| tRNA modification GTPase TrmE [Bdellovibrio bacteriovorus HD100] gi|81829094|sp|Q6MGL5|MNME_BDEBA RecName: Full=tRNA modification GTPase mnmE gi|39577441|emb|CAE81264.1| probable tRNA modification GTPase trmE [Bdellovibrio bacteriovorus HD100] Length = 479 Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 63/120 (52%), Gaps = 2/120 (1%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + I + G PNVGKS+L N ++ + A+V + PG TRD ++G GV F VDTAG+ D Sbjct: 227 FRIVLTGLPNVGKSSLLNLFLEDERAIVTDIPGTTRDVIHGDTTFEGVKFTFVDTAGLRD 286 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + + ++ A NE+ ++ F+ D + G+ + I L I++NK D Sbjct: 287 EATDLVERIGIQKSYEAQNESDVVFFVYDIEKGLGAEELQILESLDPAK--TYILANKTD 344 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 43/168 (25%), Positives = 78/168 (46%), Gaps = 12/168 (7%) Query: 167 YPNHPLEMIENN------KRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLI 220 + +E+IE N K+ E KE + + + + RI + G PNVGKS+L+ Sbjct: 186 FSTEGIEVIEENVIQVRLKKIEAGLKELVATFKVGRL--LKDGFRIVLTGLPNVGKSSLL 243 Query: 221 NRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSM 280 N L R + G TRD + ++ DTAG+R + T+ +E+ ++KS Sbjct: 244 NLFLEDERAIVTDIPGTTRDVIHGDTTFEGVKFTFVDTAGLRDEA--TDLVERIGIQKSY 301 Query: 281 QSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVS 328 ++ + + D ++L+I++S+ + +LA NK D + Sbjct: 302 EAQNESDVVFFVYDIEKGLGAEELQILESL-DPAKTYILA-NKTDKIG 347 >gi|262340851|ref|YP_003283706.1| putative GTP-binding protein [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272188|gb|ACY40096.1| putative GTP-binding protein [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 292 Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 61/187 (32%), Positives = 90/187 (48%), Gaps = 18/187 (9%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIV--DTAGIAD 62 + I+G PN GKSTL N LV +K+++ P TR R+ G IIN F I+ DT GI D Sbjct: 8 VNIIGFPNTGKSTLMNSLVGEKLSITTYKPQTTRHRILG--IINESNFQIIFSDTPGIID 65 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLID-SKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 + K M E A+ +A +ILFL + K P I + ++K N+PIII+ NK+ Sbjct: 66 PV-YPMQKIMMQYVEKALEDADIILFLTEIGKLENIP----IFNEIKKTNVPIIILINKI 120 Query: 122 DTRIAQRNFYEIYS--------LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLE 173 D + Y +Y EI+ ISA + L + I + + P + E Sbjct: 121 DQIGIKYREYVLYDAINHWHKLFPNSEILPISALKKMNQDLLMNKIIDLLSEHPPYYSKE 180 Query: 174 MIENNKR 180 + N + Sbjct: 181 FLSNRSK 187 Score = 43.1 bits (100), Expect = 0.086, Method: Compositional matrix adjust. Identities = 34/131 (25%), Positives = 63/131 (48%), Gaps = 6/131 (4%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 I K + ++G PN GKSTL+N L+G +T + TR + N N I DT Sbjct: 2 IHKSGFVNIIGFPNTGKSTLMNSLVGEKLSITTYKPQTTRHRILGIINESNFQIIFSDTP 61 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+ P + + + V+K+++ + I+L I + +++ I + + T +++ Sbjct: 62 GIIDPVYPMQKIMMQYVEKALE-----DADIILFLTEIG-KLENIPIFNEIKKTNVPIII 115 Query: 320 ALNKWDMVSDK 330 +NK D + K Sbjct: 116 LINKIDQIGIK 126 >gi|229917461|ref|YP_002886107.1| tRNA modification GTPase TrmE [Exiguobacterium sp. AT1b] gi|229468890|gb|ACQ70662.1| tRNA modification GTPase TrmE [Exiguobacterium sp. AT1b] Length = 459 Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 41/117 (35%), Positives = 67/117 (57%), Gaps = 3/117 (2%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N LV++ A+V G TRD + + GV ++DTAGI + ++ Sbjct: 225 AIIGRPNVGKSSLMNTLVQETKAIVTEIAGTTRDTIEEYVNVKGVPLKLIDTAGIRETED 284 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + + +++ A+ A L+L +++ G+T D A+ F K + II+ NK D Sbjct: 285 I-VERIGVEKSRKALEAADLVLLVLNGHEGLTVEDEAL--FEAVKGMNAIIIINKTD 338 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 38/129 (29%), Positives = 73/129 (56%), Gaps = 5/129 (3%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L A++GRPNVGKS+L+N L+ + + +G TRD++ N K P+++ D Sbjct: 216 KILREGLATAIIGRPNVGKSSLMNTLVQETKAIVTEIAGTTRDTIEEYVNVKGVPLKLID 275 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ I E + V+KS +++ + +++L+ +D + ++V G Sbjct: 276 TAGIRETEDIVERI---GVEKSRKALEAADLVLLVLNGHEGLTVEDEALFEAV--KGMNA 330 Query: 318 VLALNKWDM 326 ++ +NK D+ Sbjct: 331 IIIINKTDL 339 >gi|119947214|ref|YP_944894.1| tRNA modification GTPase TrmE [Psychromonas ingrahamii 37] gi|166234813|sp|A1T0N0|MNME_PSYIN RecName: Full=tRNA modification GTPase mnmE gi|119865818|gb|ABM05295.1| tRNA modification GTPase trmE [Psychromonas ingrahamii 37] Length = 455 Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 45/166 (27%), Positives = 86/166 (51%), Gaps = 20/166 (12%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 +++ + GRPN GKS+L+N L+G R + +G TRD + + P+ I DTAG+R+ Sbjct: 218 MKVVIAGRPNAGKSSLLNSLVGVERAIVTDIAGTTRDVMREHIHIDGMPLHIIDTAGLRE 277 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIV--DSVFNTGHAVVLAL 321 + + +E+ ++++ Q + T + + +LDAT +D R + D + +V L + Sbjct: 278 GA---DEIEKIGIERAWQEITTADRILFMLDATTT-SAEDPRQIWPDFIDKLPKSVGLTV 333 Query: 322 --NKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLD 365 NK D+ + ++ ++ D + IS +TG+G+D Sbjct: 334 VRNKADLTGEAFSMTEN------------HDHPVYRISAKTGQGVD 367 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 53/189 (28%), Positives = 96/189 (50%), Gaps = 17/189 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + I G PN GKS+L N LV + A+V + G TRD + I+G+ +I+DTAG+ +G Sbjct: 220 VVIAGRPNAGKSSLLNSLVGVERAIVTDIAGTTRDVMREHIHIDGMPLHIIDTAGLREGA 279 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAI-TSFLRK--KNIPIIIVSNKM 121 + I K ++ I A ILF++D+ I F+ K K++ + +V NK Sbjct: 280 D-EIEKIGIERAWQEITTADRILFMLDATTTSAEDPRQIWPDFIDKLPKSVGLTVVRNKA 338 Query: 122 DT-----RIAQRNFYEIYSLDFK--EIVEISAEH--DLGTSELHSVIFKIFKQKYPNHPL 172 D + + + + +Y + K + V++ EH D+ + H+ + ++++ L Sbjct: 339 DLTGEAFSMTENHDHPVYRISAKTGQGVDLLKEHLKDIMGYQGHTTSGFMARRRH----L 394 Query: 173 EMIENNKRN 181 E I+N +R+ Sbjct: 395 EAIDNAQRH 403 >gi|145590262|ref|YP_001156859.1| tRNA modification GTPase TrmE [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|205415793|sp|A4T0N1|MNME_POLSQ RecName: Full=tRNA modification GTPase mnmE gi|145048668|gb|ABP35295.1| tRNA modification GTPase trmE [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 457 Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 39/130 (30%), Positives = 65/130 (50%), Gaps = 7/130 (5%) Query: 167 YPNHPLEMIENNKRNEE----SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINR 222 +P +E +EN + E K G K + +++ + G PNVGKS+L+NR Sbjct: 180 FPEEEIEFLENAQARERLAAVKKKLEALQAGAKQGKILRDGIQLVLAGAPNVGKSSLLNR 239 Query: 223 LLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQS 282 L G + +G TRD V S + P+ I DTAG+RK + +E K ++++ ++ Sbjct: 240 LAGEEVAIVTPIAGTTRDRVKESIQIEGVPMHIIDTAGLRK---TVDEVEAKGIERTWEA 296 Query: 283 VRTCETTIVL 292 +R + I L Sbjct: 297 IRLADLVIFL 306 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 46/120 (38%), Positives = 67/120 (55%), Gaps = 4/120 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + + GAPNVGKS+L NRL +++A+V G TRDR+ I GV +I+DTAG+ Sbjct: 223 LVLAGAPNVGKSSLLNRLAGEEVAIVTPIAGTTRDRVKESIQIEGVPMHIIDTAGLRKTV 282 Query: 65 NCSIAKQMNDQTELAINEAHLILFLI--DSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + AK + ++T AI A L++FL +++ G I L K PI+ V NK D Sbjct: 283 DEVEAKGI-ERTWEAIRLADLVIFLGAPNAEPGHESLREEILGALPAK-CPILDVINKSD 340 >gi|327460961|gb|EGF07294.1| GTP-binding protein Era [Streptococcus sanguinis SK1057] Length = 299 Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 49/179 (27%), Positives = 88/179 (49%), Gaps = 7/179 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKST N ++ +K+A++ + TR+++ G + +DT GI K Sbjct: 8 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM--- 121 ++ M + + E +LF++ D I L+ +P+I+V NK+ Sbjct: 68 -TALGDFMVEAAYSTLREVDTVLFMVPVDEPRGKGDDMIIERLKAAKVPVILVVNKIDKV 126 Query: 122 --DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 D +AQ + + +DFKEIV ISA S L ++ + ++ + P + I ++ Sbjct: 127 HPDQLLAQIDDFR-QQMDFKEIVPISALQGNNVSHLIDILSENLEEGFQYFPEDQITDH 184 Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKST +N ++G + ++ TR+ + + I DT G+ KP Sbjct: 8 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +L V+ + ++R +T + ++ P K D I++ + V+L +NK D Sbjct: 68 T---ALGDFMVEAAYSTLREVDTVLFMVPVDEPRGKGDDMIIERLKAAKVPVILVVNKID 124 Query: 326 MV 327 V Sbjct: 125 KV 126 >gi|300691971|ref|YP_003752966.1| 30S ribosomal subunit_binding GTPase [Ralstonia solanacearum PSI07] gi|299079031|emb|CBJ51693.1| 30S ribosomal subunit_binding GTPase [Ralstonia solanacearum PSI07] Length = 312 Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 46/152 (30%), Positives = 76/152 (50%), Gaps = 10/152 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N LV +K+++ TR R+ G + F VDT G Sbjct: 24 VAIVGRPNVGKSTLMNALVGQKVSITSRKAQTTRHRITGIQTTDDAQFVFVDTPGFQTRH 83 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 ++ + +N + +LF++++ P D + S L ++ P+I++ NK+D Sbjct: 84 ATALNRSLNRAVTSTLTSVDAVLFVVEA-GRYGPDDAKVLSLLPRET-PVILIVNKVDRL 141 Query: 125 IA--QRNFYEIYSLD------FKEIVEISAEH 148 A + ++ D FKEIV +SA++ Sbjct: 142 DAYTRAEMVAVFLQDMAQVFPFKEIVPMSAKN 173 Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust. Identities = 32/120 (26%), Positives = 61/120 (50%), Gaps = 4/120 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VGRPNVGKSTL+N L+G +T ++ TR ++ + DT G + + Sbjct: 24 VAIVGRPNVGKSTLMNALVGQKVSITSRKAQTTRHRITGIQTTDDAQFVFVDTPGFQ--T 81 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 R +L +++ +++ S T ++ + + D +++ S+ V+L +NK D Sbjct: 82 RHATAL-NRSLNRAVTSTLTSVDAVLFVVEAGRYGPDDAKVL-SLLPRETPVILIVNKVD 139 >gi|207108954|ref|ZP_03243116.1| GTP-binding protein EngA [Helicobacter pylori HPKX_438_CA4C1] Length = 121 Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 38/105 (36%), Positives = 63/105 (60%), Gaps = 4/105 (3%) Query: 2 IYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIA 61 + TIAI+G PNVGKS+LFNRL ++++A+ + G TRD + +NG ++DT G+A Sbjct: 8 LKTIAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMA 67 Query: 62 DGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSF 106 K+ ++K++ A + LIL+++D K+ P D + F Sbjct: 68 --KDALLSKEIKALNLKAAQMSDLILYVVDGKS--IPSDEDLKLF 108 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 35/109 (32%), Positives = 60/109 (55%), Gaps = 6/109 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G+PNVGKS+L NRL +T +G TRD H +E+ DT GM K + Sbjct: 11 IAILGQPNVGKSSLFNRLARERIAITSDFAGTTRDINKRKIALNGHEVELLDTGGMAKDA 70 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA-TIPFEKQDLRIVDSVFNT 313 +++ ++ +K + S + + ++D +IP + +DL++ VF T Sbjct: 71 LLSKEIKALNLKAAQMS----DLILYVVDGKSIPSD-EDLKLFREVFKT 114 >gi|220932088|ref|YP_002508996.1| GTP-binding protein Era [Halothermothrix orenii H 168] gi|259645948|sp|B8CXI2|ERA_HALOH RecName: Full=GTPase Era gi|219993398|gb|ACL70001.1| GTP-binding protein Era [Halothermothrix orenii H 168] Length = 294 Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 80/167 (47%), Gaps = 9/167 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 ++V+GRPNVGKSTLIN L+G ++T + TR+SV + I DT G+ K Sbjct: 8 VSVIGRPNVGKSTLINNLIGQKVVITSPRPQTTRNSVRGIYTRPEGQIVFVDTPGIHKAR 67 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L+ ++K+ +S+ + I ++D F K D I + + V++A+NK D Sbjct: 68 N---KLDNYMLEKAYESLEDIDVIIFMVDGNYSFGKGDEFIYNQIKGVRVPVIVAMNKID 124 Query: 326 MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVL 372 ++ ++ + + + P I IS G LD L+ + Sbjct: 125 RINKEIVMERQKNYEERTGFPVI------PISASRGTNLDTLVEEIF 165 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/178 (25%), Positives = 82/178 (46%), Gaps = 12/178 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 ++++G PNVGKSTL N L+ +K+ + P TR+ + G VDT GI + Sbjct: 8 VSVIGRPNVGKSTLINNLIGQKVVITSPRPQTTRNSVRGIYTRPEGQIVFVDTPGIHKAR 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N + M ++ ++ + +I+F++D D I + ++ +P+I+ NK+D R Sbjct: 68 N-KLDNYMLEKAYESLEDIDVIIFMVDGNYSFGKGDEFIYNQIKGVRVPVIVAMNKID-R 125 Query: 125 I-------AQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 I Q+N+ E ++ ISA L IF + +P +M+ Sbjct: 126 INKEIVMERQKNYEERTGFP---VIPISASRGTNLDTLVEEIFTFLPEGPQYYPEDMV 180 >gi|212640677|ref|YP_002317197.1| tRNA modification GTPase TrmE [Anoxybacillus flavithermus WK1] gi|212562157|gb|ACJ35212.1| tRNA modification GTPase, TrmE [Anoxybacillus flavithermus WK1] Length = 464 Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 39/129 (30%), Positives = 71/129 (55%), Gaps = 5/129 (3%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + L ++GRPNVGKS+L+N L NR + G TRD + N + P+ + D Sbjct: 221 KVLRDGLATVIIGRPNVGKSSLLNSLAHENRAIVTDIPGTTRDVIEEYVNVRGVPLRLLD 280 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ I E + V++S + ++ + +++L+ P +D ++ ++V G V Sbjct: 281 TAGIRETEDIVERI---GVERSRKVLKEADLILLVLNYNEPLTVEDEQLFEAV--KGMDV 335 Query: 318 VLALNKWDM 326 ++ +NK D+ Sbjct: 336 IVIVNKTDL 344 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/116 (32%), Positives = 65/116 (56%), Gaps = 3/116 (2%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 I+G PNVGKS+L N L + A+V + PG TRD + + GV ++DTAGI + ++ Sbjct: 231 IIGRPNVGKSSLLNSLAHENRAIVTDIPGTTRDVIEEYVNVRGVPLRLLDTAGIRETEDI 290 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + + +++ + EA LIL +++ +T D + F K + +I++ NK D Sbjct: 291 -VERIGVERSRKVLKEADLILLVLNYNEPLTVEDEQL--FEAVKGMDVIVIVNKTD 343 >gi|194291282|ref|YP_002007189.1| tRNA modification gtpase trme [Cupriavidus taiwanensis LMG 19424] gi|193225117|emb|CAQ71128.1| GTPase involved in tRNA modification and in thiophene and furan oxidation [Cupriavidus taiwanensis LMG 19424] Length = 475 Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 41/126 (32%), Positives = 70/126 (55%), Gaps = 7/126 (5%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 ++ + G PNVGKS+L N L ++A+V G TRDR+ I+G+ +I+DTAG+ + Sbjct: 222 SVVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDRVRETIQIDGIPLHIIDTAGLREE 281 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDS----KAGITPYDHAITSFLRKK---NIPIII 116 + + ++T AI A ++L L+D+ + G++ D AI L + PI+ Sbjct: 282 AADEVERIGIERTWDAIRRADIVLHLVDATDYLRHGLSEIDDAIDDKLSGQLPPGAPIVR 341 Query: 117 VSNKMD 122 + NK+D Sbjct: 342 IVNKID 347 Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 30/97 (30%), Positives = 56/97 (57%), Gaps = 2/97 (2%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + L + + G+PNVGKS+L+N L G + +G TRD V + P+ I DTA Sbjct: 217 LREGLSVVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDRVRETIQIDGIPLHIIDTA 276 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDAT 296 G+R+ + + +E+ ++++ ++R + + L+DAT Sbjct: 277 GLREEA--ADEVERIGIERTWDAIRRADIVLHLVDAT 311 >gi|303239164|ref|ZP_07325693.1| small GTP-binding protein [Acetivibrio cellulolyticus CD2] gi|302593209|gb|EFL62928.1| small GTP-binding protein [Acetivibrio cellulolyticus CD2] Length = 407 Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 51/160 (31%), Positives = 81/160 (50%), Gaps = 6/160 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYG--QAIINGVIFNIVDTAGIAD 62 IAI G N GKSTL N L + +AVV N PG T D +Y + + G + I+DTAGI D Sbjct: 12 IAIFGRRNAGKSTLINALTGQDIAVVSNVPGTTTDPVYKTMELLPLGPVV-IIDTAGIDD 70 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + + ++T + + + +F++D+ GIT +D ++ + + ++ V NK D Sbjct: 71 VGDLGNLRM--EKTYDVLRKTNFAIFVVDADEGITEFDIKFIEEIKSREVAVVAVLNKSD 128 Query: 123 TRIAQRNFYEIYSLDFK-EIVEISAEHDLGTSELHSVIFK 161 ++ + Y I EISA+ G EL +I K Sbjct: 129 KIKTEQTKIDEYRKKLGIPICEISAKSKSGIDELKQLIAK 168 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 76/165 (46%), Gaps = 13/165 (7%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWN-WKNHPIEIFDTAGMR 262 L IA+ GR N GKSTLIN L G + + + G T D V + P+ I DTAG+ Sbjct: 10 LHIAIFGRRNAGKSTLINALTGQDIAVVSNVPGTTTDPVYKTMELLPLGPVVIIDTAGID 69 Query: 263 KPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALN 322 L ++K+ +R I ++DA + D++ ++ + + AVV LN Sbjct: 70 D----VGDLGNLRMEKTYDVLRKTNFAIFVVDADEGITEFDIKFIEEIKSREVAVVAVLN 125 Query: 323 KWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDL 367 K D + + + + R K I I IS ++ G+D+L Sbjct: 126 KSDKIKTEQTKIDEYRKKL--------GIPICEISAKSKSGIDEL 162 >gi|291458560|ref|ZP_06597950.1| GTP-binding protein Era [Oribacterium sp. oral taxon 078 str. F0262] gi|291419093|gb|EFE92812.1| GTP-binding protein Era [Oribacterium sp. oral taxon 078 str. F0262] Length = 313 Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 48/164 (29%), Positives = 79/164 (48%), Gaps = 10/164 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYG--QAIINGVIFNIVDTAGIAD 62 + + G PNVGKSTL N ++ +K+A+ P TR R+ G +IF+ DT GI Sbjct: 22 VGLAGRPNVGKSTLMNAVIGQKIAITSKRPQTTRKRIMGVYDDERGQIIFH--DTPGIHK 79 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 +N +++ M E A+ + L+L+L++ + I LR+ I+V NK+D Sbjct: 80 ARN-RLSEFMEHVAEKALGDVDLVLWLVEPGELPGEAEEYIAGLLRECKKKTILVVNKID 138 Query: 123 TRIAQRNFYEIYS-----LDFKEIVEISAEHDLGTSELHSVIFK 161 + ++ L+ E++ ISA EL S IF+ Sbjct: 139 ILKNEEELTQLTEAYRNLLELTELIPISAYKHKNIEELKSAIFR 182 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 39/148 (26%), Positives = 78/148 (52%), Gaps = 9/148 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP- 264 + + GRPNVGKSTL+N ++G +T + TR + ++ + I DT G+ K Sbjct: 22 VGLAGRPNVGKSTLMNAVIGQKIAITSKRPQTTRKRIMGVYDDERGQIIFHDTPGIHKAR 81 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLD-ATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 +R++E +E +K++ V + + L++ +P E ++ I + +L +NK Sbjct: 82 NRLSEFMEH-VAEKALGDV---DLVLWLVEPGELPGEAEEY-IAGLLRECKKKTILVVNK 136 Query: 324 WDMVSDKLNLLQDLRTKAIKNLPQIGDI 351 D++ ++ L Q T+A +NL ++ ++ Sbjct: 137 IDILKNEEELTQ--LTEAYRNLLELTEL 162 >gi|256370677|ref|YP_003108502.1| tRNA modification GTPase TrmE [Candidatus Sulcia muelleri SMDSEM] gi|256009469|gb|ACU52829.1| tRNA modification GTPase TrmE [Candidatus Sulcia muelleri SMDSEM] Length = 461 Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 51/153 (33%), Positives = 81/153 (52%), Gaps = 4/153 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 ++I+G NVGKSTLFN+++K + ++V N G TR+ + IING+ F +DTAGI + Sbjct: 223 VSIIGCTNVGKSTLFNKILKDERSIVSNIAGTTRNYIEENLIINGIKFRFIDTAGINNKT 282 Query: 65 NCSIAKQMNDQTELAINEAHLILFLID--SKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 I K +T I ++ LIL++ D ++ I ++ KK I I+I NK D Sbjct: 283 KDYIEKLGIKKTYKNIKKSDLILYVFDCLNEEIIMKNLKSLQEKYPKKKIFILI--NKYD 340 Query: 123 TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 + + + K+I ISA++ G L Sbjct: 341 LIKKNKKKINLRNYQDKDIFHISAKYGYGIKNL 373 Score = 43.9 bits (102), Expect = 0.064, Method: Compositional matrix adjust. Identities = 22/90 (24%), Positives = 49/90 (54%), Gaps = 2/90 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 ++++G NVGKSTL N++L R + + +G TR+ + + DTAG+ + Sbjct: 223 VSIIGCTNVGKSTLFNKILKDERSIVSNIAGTTRNYIEENLIINGIKFRFIDTAGINNKT 282 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA 295 + + +E+ +KK+ ++++ + + + D Sbjct: 283 K--DYIEKLGIKKTYKNIKKSDLILYVFDC 310 >gi|255023683|ref|ZP_05295669.1| tRNA modification GTPase TrmE [Listeria monocytogenes FSL J1-208] Length = 273 Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 39/132 (29%), Positives = 73/132 (55%), Gaps = 5/132 (3%) Query: 195 SSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIE 254 S K + + L A++GRPNVGKS+L+N+L+ + + +G TRD + N + P+ Sbjct: 27 SQGKILREGLATAIIGRPNVGKSSLLNQLIQEEKAIVTDIAGTTRDIIEEYVNVRGVPLR 86 Query: 255 IFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTG 314 + DTAG+R+ I E + V++S +++ + +++L+ +D + ++ G Sbjct: 87 LIDTAGIRETEDIVEKI---GVERSRKALADADFILLVLNQNEELTVEDEALFEAA--AG 141 Query: 315 HAVVLALNKWDM 326 H V+ LNK D+ Sbjct: 142 HNYVVVLNKTDL 153 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 45/158 (28%), Positives = 82/158 (51%), Gaps = 3/158 (1%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N+L++++ A+V + G TRD + + GV ++DTAGI + ++ Sbjct: 39 AIIGRPNVGKSSLLNQLIQEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAGIRETED 98 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 + K +++ A+ +A IL +++ +T D A+ N +++ ++TR+ Sbjct: 99 I-VEKIGVERSRKALADADFILLVLNQNEELTVEDEALFEAAAGHNYVVVLNKTDLETRL 157 Query: 126 AQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 E+ + IV S +D G L I +F Sbjct: 158 DINRVRELAGEN--PIVSTSLVNDEGLEALEEAIKALF 193 >gi|86136756|ref|ZP_01055334.1| tRNA modification GTPase [Roseobacter sp. MED193] gi|85826080|gb|EAQ46277.1| tRNA modification GTPase [Roseobacter sp. MED193] Length = 428 Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 51/195 (26%), Positives = 88/195 (45%), Gaps = 35/195 (17%) Query: 191 SEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKN 250 ++G + I +A++G PNVGKSTL+N L G +T +G TRD + + + Sbjct: 201 TKGVKIAERIRDGFEVAIIGAPNVGKSTLLNMLAGREAAITSEYAGTTRDVIEVRMDLAG 260 Query: 251 HPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSV 310 P+ + DTAG+R E + + +K E+ DLR+ + Sbjct: 261 LPVTLLDTAGLRDTDDHVEGIGIELARKRA-------------------EQADLRVF--L 299 Query: 311 FNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVS 370 A+ L + D+ LR KA ++ +I D +ISG+TG+G+D L+ Sbjct: 300 VEPDEAIDLEMRPGDI---------RLRPKA--DMREISD---GSISGKTGQGVDRLVTH 345 Query: 371 VLEINKLWKTRITTS 385 + + K T++ + Sbjct: 346 ISDTLKDRSTQVGVA 360 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 49/84 (58%), Gaps = 6/84 (7%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + +AI+GAPNVGKSTL N L ++ A+ + G TRD + + + G+ ++DTAG+ D Sbjct: 214 FEVAIIGAPNVGKSTLLNMLAGREAAITSEYAGTTRDVIEVRMDLAGLPVTLLDTAGLRD 273 Query: 63 ------GKNCSIAKQMNDQTELAI 80 G +A++ +Q +L + Sbjct: 274 TDDHVEGIGIELARKRAEQADLRV 297 >gi|260886788|ref|ZP_05898051.1| GTP-binding protein Era [Selenomonas sputigena ATCC 35185] gi|330839400|ref|YP_004413980.1| GTP-binding protein Era [Selenomonas sputigena ATCC 35185] gi|260863387|gb|EEX77887.1| GTP-binding protein Era [Selenomonas sputigena ATCC 35185] gi|329747164|gb|AEC00521.1| GTP-binding protein Era [Selenomonas sputigena ATCC 35185] Length = 297 Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 48/178 (26%), Positives = 84/178 (47%), Gaps = 5/178 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA+VG PNVGKSTL N L+ +K+ ++ + P TR R+ +DT GI + Sbjct: 11 IAVVGRPNVGKSTLINSLIGQKIVIMSDKPQTTRTRILCILTEPDAQIVFLDTPGIHKPR 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD-- 122 + ++ + M E + E + F++D+ + P + I L+ P I+V NK+D Sbjct: 71 H-TLGEYMVRAAESTLKEVDAVFFVVDATEKMGPGERYILERLQATKCPCILVVNKLDLI 129 Query: 123 TRIAQRNFYEIY--SLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 + E Y + F V ISA+ ++ L + + K + +P +M+ + Sbjct: 130 EKPVVLPILESYMKAYPFAGAVPISAKEEVNLDSLLAEVKKYLPEGPAYYPEDMVTDQ 187 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 78/166 (46%), Gaps = 8/166 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IAVVGRPNVGKSTLIN L+G ++ + TR + + I DT G+ KP Sbjct: 11 IAVVGRPNVGKSTLINSLIGQKIVIMSDKPQTTRTRILCILTEPDAQIVFLDTPGIHKPR 70 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +L + V+ + +++ + ++DAT + I++ + T +L +NK D Sbjct: 71 H---TLGEYMVRAAESTLKEVDAVFFVVDATEKMGPGERYILERLQATKCPCILVVNKLD 127 Query: 326 MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSV 371 ++ + L + +K P G + IS + LD L+ V Sbjct: 128 LIEKPVVL--PILESYMKAYPFAGAV---PISAKEEVNLDSLLAEV 168 >gi|329912353|ref|ZP_08275734.1| GTP-binding protein Era [Oxalobacteraceae bacterium IMCC9480] gi|327545640|gb|EGF30798.1| GTP-binding protein Era [Oxalobacteraceae bacterium IMCC9480] Length = 300 Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 48/148 (32%), Positives = 71/148 (47%), Gaps = 9/148 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N L+ K+++ TR R+ G + F VDT G Sbjct: 15 IAIVGRPNVGKSTLMNALIGAKVSITSRKAQTTRHRITGIQTVEDTQFIYVDTPGFQTKH 74 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 ++ K +N + A +ILFLI++ P D + + +P I+V NK D R Sbjct: 75 ANALNKTLNKTVANTLTSADVILFLIEA-GTFGPADQQVLDLI-PDTVPCILVINKSD-R 131 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGT 152 + + L F + +I+A+HD Sbjct: 132 VKDKAVL----LPFAQ--QIAAKHDFAA 153 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/129 (32%), Positives = 68/129 (52%), Gaps = 4/129 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA+VGRPNVGKSTL+N L+G +T ++ TR ++ ++ DT G + + Sbjct: 15 IAIVGRPNVGKSTLMNALIGAKVSITSRKAQTTRHRITGIQTVEDTQFIYVDTPGFQ--T 72 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + +L KT+ K++ + T I+ L F D +++D + +T +L +NK D Sbjct: 73 KHANAL-NKTLNKTVANTLTSADVILFLIEAGTFGPADQQVLDLIPDT-VPCILVINKSD 130 Query: 326 MVSDKLNLL 334 V DK LL Sbjct: 131 RVKDKAVLL 139 >gi|115351065|ref|YP_772904.1| GTP-binding protein Era [Burkholderia ambifaria AMMD] gi|115281053|gb|ABI86570.1| GTP-binding protein Era [Burkholderia ambifaria AMMD] Length = 299 Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 42/149 (28%), Positives = 72/149 (48%), Gaps = 7/149 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N LV +K+++ TR R+ G + F VDT G Sbjct: 14 IAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRITGINTFDDAQFVFVDTPGFQTRH 73 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + ++ + +N + +ILF+I++ P D + + +P ++++NK+D Sbjct: 74 STALNRSLNRAVTSTLTSVDVILFVIEA-GRFGPDDQKVLDLI-PPGMPTLLIANKIDRV 131 Query: 125 IAQRNFYEIYS-----LDFKEIVEISAEH 148 + + +F E+V +SA+ Sbjct: 132 TDKATLFPFMQQMSGLREFTELVPLSAQR 160 Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 39/129 (30%), Positives = 67/129 (51%), Gaps = 4/129 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA+VGRPNVGKSTL+N L+G +T ++ TR ++ + + DT G + + Sbjct: 14 IAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRITGINTFDDAQFVFVDTPGFQ--T 71 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 R + +L +++ +++ S T I+ + F D +++D + G +L NK D Sbjct: 72 RHSTAL-NRSLNRAVTSTLTSVDVILFVIEAGRFGPDDQKVLD-LIPPGMPTLLIANKID 129 Query: 326 MVSDKLNLL 334 V+DK L Sbjct: 130 RVTDKATLF 138 >gi|296330032|ref|ZP_06872516.1| tRNA modification GTPase TrmE [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305676756|ref|YP_003868428.1| tRNA modification GTPase [Bacillus subtilis subsp. spizizenii str. W23] gi|296153071|gb|EFG93936.1| tRNA modification GTPase TrmE [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305415000|gb|ADM40119.1| tRNA modification GTPase [Bacillus subtilis subsp. spizizenii str. W23] Length = 459 Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 37/129 (28%), Positives = 74/129 (57%), Gaps = 5/129 (3%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L ++GRPNVGKS+L+N L+ + + G TRD + N + P+ + D Sbjct: 216 KILREGLSTVIIGRPNVGKSSLLNSLVHEAKAIVTDIPGTTRDVIEEYVNVRGVPLRLVD 275 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ I E + V++S Q ++ + +++L+ + ++D+++ ++V G V Sbjct: 276 TAGIRETEDIVERI---GVERSRQVLKEADLILLVLNYSEELSEEDVKLFEAV--EGMDV 330 Query: 318 VLALNKWDM 326 ++ +NK D+ Sbjct: 331 IVIMNKTDL 339 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 38/116 (32%), Positives = 66/116 (56%), Gaps = 3/116 (2%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 I+G PNVGKS+L N LV + A+V + PG TRD + + GV +VDTAGI + ++ Sbjct: 226 IIGRPNVGKSSLLNSLVHEAKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDI 285 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + + +++ + EA LIL +++ ++ D + F + + +I++ NK D Sbjct: 286 -VERIGVERSRQVLKEADLILLVLNYSEELSEED--VKLFEAVEGMDVIVIMNKTD 338 >gi|257065848|ref|YP_003152104.1| GTP-binding protein Era [Anaerococcus prevotii DSM 20548] gi|256797728|gb|ACV28383.1| GTP-binding protein Era [Anaerococcus prevotii DSM 20548] Length = 293 Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 50/152 (32%), Positives = 84/152 (55%), Gaps = 18/152 (11%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIING----VIFNIVDTAGI 60 +++VG NVGKSTL +++ +K++++ N P TRD++ Q I N +IF +DT GI Sbjct: 7 VSVVGRANVGKSTLMEKIIGEKISIISNKPQTTRDKI--QIIYNDEESQIIF--LDTPGI 62 Query: 61 ADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 +N + +++ +E ++ E+ +I ++D I D I L K +P I++ NK Sbjct: 63 QTPRN-KLQERLLTFSEESLKESDIITMVVDDSEEIGRIDGEILEMLEKIKLPKILLINK 121 Query: 121 MD----TRIA--QRNFYEIYSLDFKEIVEISA 146 D +IA + NF + DF I+EISA Sbjct: 122 TDLADREKIAHIRENF---RACDFDRIIEISA 150 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/123 (26%), Positives = 65/123 (52%), Gaps = 3/123 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 ++VVGR NVGKSTL+ +++G + ++ TRD + I +N + I DT G++ P Sbjct: 7 VSVVGRANVGKSTLMEKIIGEKISIISNKPQTTRDKIQIIYNDEESQIIFLDTPGIQTPR 66 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L+++ + S +S++ + +++D + + D I++ + +L +NK D Sbjct: 67 N---KLQERLLTFSEESLKESDIITMVVDDSEEIGRIDGEILEMLEKIKLPKILLINKTD 123 Query: 326 MVS 328 + Sbjct: 124 LAD 126 >gi|145630696|ref|ZP_01786475.1| GTP-binding protein Era [Haemophilus influenzae R3021] gi|144983822|gb|EDJ91272.1| GTP-binding protein Era [Haemophilus influenzae R3021] Length = 302 Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 50/176 (28%), Positives = 85/176 (48%), Gaps = 6/176 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N+++ +K+++ TR R+ G VDT G+ + Sbjct: 13 IAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIKTEGAYQEIYVDTPGLHIEE 72 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN AI + LI+F++D D + + LR P+++ NK+D Sbjct: 73 KRAINRLMNRVASSAIGDVDLIIFVVDG-THWNADDEMVLNKLRNAKAPVVLAINKVDNI 131 Query: 125 IAQRNFY----EIYS-LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 + + E+ S +F IV ISA+ EL ++ + ++ + P + + Sbjct: 132 KNKDDLLPFITELSSKFNFAHIVPISAQRGNNVHELEKIVRQSLREGVHHFPEDYV 187 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 42/131 (32%), Positives = 70/131 (53%), Gaps = 7/131 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIF-DTAGMR-K 263 IA+VGRPNVGKSTL+N++LG +T ++ TR + + + EI+ DT G+ + Sbjct: 13 IAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRI-VGIKTEGAYQEIYVDTPGLHIE 71 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 R L + ++ V + I ++D T + D +++ + N VVLA+NK Sbjct: 72 EKRAINRLMNRVASSAIGDV---DLIIFVVDGT-HWNADDEMVLNKLRNAKAPVVLAINK 127 Query: 324 WDMVSDKLNLL 334 D + +K +LL Sbjct: 128 VDNIKNKDDLL 138 >gi|110639447|ref|YP_679656.1| GTP-binding protein Era [Cytophaga hutchinsonii ATCC 33406] gi|110282128|gb|ABG60314.1| GTP-binding protein [Cytophaga hutchinsonii ATCC 33406] Length = 298 Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 43/121 (35%), Positives = 70/121 (57%), Gaps = 9/121 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIV--DTAGIAD 62 ++I+G PN GKSTL N LV ++++++ TR R+ G IIN F IV DT G+ + Sbjct: 12 VSIIGRPNAGKSTLMNCLVGERLSIITPKAQTTRHRVMG--IINDPEFQIVYSDTPGVIE 69 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAIT-SFLRKKNIPIIIVSNKM 121 K + K M + ++ +A +IL+++D K P DHA+ L +P+++V NK+ Sbjct: 70 PK-YELQKSMMRFVDFSLEDADMILWVLDVK---DPEDHALVLQRLNNVEVPVLLVLNKI 125 Query: 122 D 122 D Sbjct: 126 D 126 Score = 40.4 bits (93), Expect = 0.60, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 5/121 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 ++++GRPN GKSTL+N L+G + ++ TR V N I DT G+ +P Sbjct: 12 VSIIGRPNAGKSTLMNCLVGERLSIITPKAQTTRHRVMGIINDPEFQIVYSDTPGVIEPK 71 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L++ ++ S+ + + +LD P E L ++ + N V+L LNK D Sbjct: 72 Y---ELQKSMMRFVDFSLEDADMILWVLDVKDP-EDHAL-VLQRLNNVEVPVLLVLNKID 126 Query: 326 M 326 + Sbjct: 127 L 127 >gi|257869127|ref|ZP_05648780.1| GTP-binding protein Era [Enterococcus gallinarum EG2] gi|257803291|gb|EEV32113.1| GTP-binding protein Era [Enterococcus gallinarum EG2] Length = 299 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 50/145 (34%), Positives = 72/145 (49%), Gaps = 5/145 (3%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AIVG PNVGKSTL NR+V +K+A++ + TR+++ G +DT GI K+ Sbjct: 10 AIVGRPNVGKSTLLNRVVGQKIAIMSDKAQTTRNKIQGVYTTPDAQIVFIDTPGIHKPKH 69 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 + M + A+ E + LF+I + D I LRK P+ +V NK+D Sbjct: 70 -RLGDFMVETAYSALREVDVTLFMISADQKRGKGDDFIIERLRKNETPVFLVINKIDKVH 128 Query: 126 AQR--NFYEIYS--LDFKEIVEISA 146 E Y+ + F EIV ISA Sbjct: 129 PDELLAIIEDYAAQMTFAEIVPISA 153 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 3/121 (2%) Query: 207 AVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSR 266 A+VGRPNVGKSTL+NR++G + ++ TR+ + + + I DT G+ KP Sbjct: 10 AIVGRPNVGKSTLLNRVVGQKIAIMSDKAQTTRNKIQGVYTTPDAQIVFIDTPGIHKPKH 69 Query: 267 ITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 L V+ + ++R + T+ ++ A K D I++ + V L +NK D Sbjct: 70 ---RLGDFMVETAYSALREVDVTLFMISADQKRGKGDDFIIERLRKNETPVFLVINKIDK 126 Query: 327 V 327 V Sbjct: 127 V 127 >gi|222152667|ref|YP_002561842.1| GTP-binding protein Era [Streptococcus uberis 0140J] gi|254783667|sp|B9DRF9|ERA_STRU0 RecName: Full=GTPase Era gi|222113478|emb|CAR41209.1| GTP-binding protein Era homolog [Streptococcus uberis 0140J] Length = 299 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 44/146 (30%), Positives = 74/146 (50%), Gaps = 5/146 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKST N ++ +K+A++ + TR+++ G + +DT GI K Sbjct: 8 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 ++ M + + E +LF++ + D I L+ IP+I+V NK+D Sbjct: 68 -TALGDFMVESAYSTLREVDTVLFMVPADEKRGKGDDMIMERLKNAKIPVILVINKIDKV 126 Query: 125 IAQRNFYEI----YSLDFKEIVEISA 146 + +I +DFKE+V ISA Sbjct: 127 HPDQLLEQIDDFRSQMDFKEVVPISA 152 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 38/137 (27%), Positives = 68/137 (49%), Gaps = 5/137 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKST +N ++G + ++ TR+ + + I DT G+ KP Sbjct: 8 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +L V+ + ++R +T + ++ A K D I++ + N V+L +NK D Sbjct: 68 T---ALGDFMVESAYSTLREVDTVLFMVPADEKRGKGDDMIMERLKNAKIPVILVINKID 124 Query: 326 MV--SDKLNLLQDLRTK 340 V L + D R++ Sbjct: 125 KVHPDQLLEQIDDFRSQ 141 >gi|238022844|ref|ZP_04603270.1| hypothetical protein GCWU000324_02764 [Kingella oralis ATCC 51147] gi|237865652|gb|EEP66790.1| hypothetical protein GCWU000324_02764 [Kingella oralis ATCC 51147] Length = 390 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 43/120 (35%), Positives = 67/120 (55%), Gaps = 2/120 (1%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + +VGAPNVGKS+L N L +A+V + G TRD + ++GV +I DTAG+ + Sbjct: 226 VVLVGAPNVGKSSLLNALAGDDIAIVTHIAGTTRDTVREHITLDGVPIHITDTAGLRETD 285 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + K +++E A+ A + L LID GI AI + L ++ I++ NK D R Sbjct: 286 DL-VEKIGIERSEKAVQNADVALILIDPAEGINAATQAILNKL-PSSLTRIVIHNKADLR 343 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 49/193 (25%), Positives = 99/193 (51%), Gaps = 24/193 (12%) Query: 189 ITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNW 248 +++ G+ ++ + + + + +VG PNVGKS+L+N L G + + +G TRD+V Sbjct: 211 LSTAGQGAI--LREGMNVVLVGAPNVGKSSLLNALAGDDIAIVTHIAGTTRDTVREHITL 268 Query: 249 KNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVD 308 PI I DTAG+R+ + E + +++S ++V+ + ++L+D I++ Sbjct: 269 DGVPIHITDTAGLRETDDLVEKI---GIERSEKAVQNADVALILIDPAEGINAATQAILN 325 Query: 309 SVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINT--------ISGRT 360 + ++ +V+ NK D+ ++ + + + QIG + I T +S +T Sbjct: 326 KLPSSLTRIVIH-NKADLRNETPSRVDN----------QIGSLKIKTDTPATLIKLSAKT 374 Query: 361 GEGLDDLMVSVLE 373 G GLD L ++L+ Sbjct: 375 GAGLDLLKQALLD 387 >gi|33239666|ref|NP_874608.1| tRNA modification GTPase TrmE [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|46577393|sp|Q7VE01|MNME_PROMA RecName: Full=tRNA modification GTPase mnmE gi|33237191|gb|AAP99260.1| Predicted GTPase [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 455 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 43/122 (35%), Positives = 66/122 (54%), Gaps = 6/122 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKS++ N L K + A+V + PG TRD L + I+ GV ++DTAGI + Sbjct: 229 VALVGLPNVGKSSILNLLSKHERAIVTDLPGTTRDLLESEIILEGVPITLIDTAGIRETN 288 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRK--KNIPIIIVSNKMD 122 N I K ++ + A +++ + D G D + L K K P +I+ NK D Sbjct: 289 N-EIEKIGVSLSQKTLFTADIVVLIFDLSKGWNKNDQ---NLLEKIPKGTPTLIIGNKAD 344 Query: 123 TR 124 + Sbjct: 345 LK 346 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 38/134 (28%), Positives = 71/134 (52%), Gaps = 4/134 (2%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 I L++A+VG PNVGKS+++N L + R + G TRD + + PI + DTA Sbjct: 223 IRNGLKVALVGLPNVGKSSILNLLSKHERAIVTDLPGTTRDLLESEIILEGVPITLIDTA 282 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R+ + +E+ V S +++ T + +++ D + + K D +++ + G ++ Sbjct: 283 GIRETNN---EIEKIGVSLSQKTLFTADIVVLIFDLSKGWNKNDQNLLEKI-PKGTPTLI 338 Query: 320 ALNKWDMVSDKLNL 333 NK D+ S N+ Sbjct: 339 IGNKADLKSQSTNI 352 >gi|167854943|ref|ZP_02477718.1| GTP-binding protein Era [Haemophilus parasuis 29755] gi|219870403|ref|YP_002474778.1| GTP-binding protein Era [Haemophilus parasuis SH0165] gi|254783657|sp|B8F3C8|ERA_HAEPS RecName: Full=GTPase Era gi|167853900|gb|EDS25139.1| GTP-binding protein Era [Haemophilus parasuis 29755] gi|219690607|gb|ACL31830.1| GTP-binding protein Era binding 16S rRNA and 30S ribosome [Haemophilus parasuis SH0165] Length = 300 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 50/183 (27%), Positives = 86/183 (46%), Gaps = 20/183 (10%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N+++ +K+++ TR R+ G VDT G+ + Sbjct: 11 IAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRILGIKTEGAYQEIYVDTPGLHIEE 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD-- 122 +I + MN AI + +++F+++ T D + + LR P+I+ NK+D Sbjct: 71 KRAINRLMNRAAASAIGDVDMVIFVVEG-TKWTDDDEMVLNKLRSTKAPVILAINKVDNI 129 Query: 123 ----------TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPL 172 T ++Q+ FKEI+ ISA+ L + + K+ ++P Sbjct: 130 KEKEELLPHLTALSQK-------FPFKEIIPISAQRGKNVHILEKFVRESLKEGIHHYPE 182 Query: 173 EMI 175 + + Sbjct: 183 DYV 185 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 38/133 (28%), Positives = 72/133 (54%), Gaps = 5/133 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIF-DTAGMRKP 264 IA+VGRPNVGKSTL+N++LG +T ++ TR + + + EI+ DT G+ Sbjct: 11 IAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRI-LGIKTEGAYQEIYVDTPGLHIE 69 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 + ++ + + + ++ + I +++ T + D +++ + +T V+LA+NK Sbjct: 70 EK--RAINRLMNRAAASAIGDVDMVIFVVEGT-KWTDDDEMVLNKLRSTKAPVILAINKV 126 Query: 325 DMVSDKLNLLQDL 337 D + +K LL L Sbjct: 127 DNIKEKEELLPHL 139 >gi|163791428|ref|ZP_02185837.1| GTP-binding protein Era [Carnobacterium sp. AT7] gi|159873292|gb|EDP67387.1| GTP-binding protein Era [Carnobacterium sp. AT7] Length = 299 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 55/180 (30%), Positives = 86/180 (47%), Gaps = 15/180 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 ++IVG PNVGKSTL NR+V +K+A++ + TR+++ G +DT GI K Sbjct: 9 VSIVGRPNVGKSTLLNRIVGQKIAIMSDKAQTTRNKIQGIYTTPESQIVFIDTPGIHKPK 68 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + M D A E +ILF+++ P D+ I L+ P+ +V NK+D + Sbjct: 69 H-RLGDFMVDSAFSAFREVDVILFMVNIAEKRGPGDNFIMERLKTVKSPVFLVLNKID-K 126 Query: 125 IAQRNFYEIYS-----LDFKEIVEISAEHDLGTSELHSVIFKIF---KQKYP-----NHP 171 I I +DF++++ ISA L S + K Q YP +HP Sbjct: 127 IHPDQLLPIIEDYRSLVDFEQVIPISAADGNNVETLLSEVTKYLPEGPQFYPDDQVTDHP 186 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 36/136 (26%), Positives = 64/136 (47%), Gaps = 5/136 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +++VGRPNVGKSTL+NR++G + ++ TR+ + + I DT G+ KP Sbjct: 9 VSIVGRPNVGKSTLLNRIVGQKIAIMSDKAQTTRNKIQGIYTTPESQIVFIDTPGIHKPK 68 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L V + + R + + +++ D I++ + V L LNK D Sbjct: 69 H---RLGDFMVDSAFSAFREVDVILFMVNIAEKRGPGDNFIMERLKTVKSPVFLVLNKID 125 Query: 326 MVSDK--LNLLQDLRT 339 + L +++D R+ Sbjct: 126 KIHPDQLLPIIEDYRS 141 >gi|304405894|ref|ZP_07387552.1| tRNA modification GTPase TrmE [Paenibacillus curdlanolyticus YK9] gi|304345137|gb|EFM10973.1| tRNA modification GTPase TrmE [Paenibacillus curdlanolyticus YK9] Length = 461 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 44/158 (27%), Positives = 81/158 (51%), Gaps = 3/158 (1%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AIVG PNVGKS+L N L + A+V + PG TRD + +NG+ ++DTAGI + + Sbjct: 227 AIVGRPNVGKSSLLNALTQSNKAIVTDIPGTTRDVIEEFVTVNGIPLRLLDTAGIRETAD 286 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 + + +++ A+ EA LIL++++ + D + L + + +I + ++ Sbjct: 287 V-VERIGVERSNSALEEADLILYVLNRNEKLHDDDRQLMEKLAGRQVVVIFNKTDLPQQL 345 Query: 126 AQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 +++ + IV +S + G L VI ++F Sbjct: 346 ETAEVEQVFPAE--RIVPMSVLGEEGIDRLEEVISELF 381 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 15/167 (8%) Query: 167 YPNHPLEMIENNKRNEESPKENITSEG-------KSSVKNISKPLRIAVVGRPNVGKSTL 219 YP H +E + + E + EG S K + + + A+VGRPNVGKS+L Sbjct: 183 YPEHDVEELTSAFIREHC---GVALEGVKRLLKTASEGKILREGIVTAIVGRPNVGKSSL 239 Query: 220 INRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKS 279 +N L N+ + G TRD + P+ + DTAG+R+ + + E + V++S Sbjct: 240 LNALTQSNKAIVTDIPGTTRDVIEEFVTVNGIPLRLLDTAGIRETADVVERI---GVERS 296 Query: 280 MQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 ++ + + +L+ D ++++ + G VV+ NK D+ Sbjct: 297 NSALEEADLILYVLNRNEKLHDDDRQLMEKL--AGRQVVVIFNKTDL 341 >gi|299535811|ref|ZP_07049132.1| GTP-binding protein Era-like protein [Lysinibacillus fusiformis ZC1] gi|298729011|gb|EFI69565.1| GTP-binding protein Era-like protein [Lysinibacillus fusiformis ZC1] Length = 305 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 45/148 (30%), Positives = 77/148 (52%), Gaps = 9/148 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 I+I+G PNVGKST NR++ +K+A++ + P TR+++ G + +DT GI K Sbjct: 13 ISIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKVQGVLTTDDSQMIFIDTPGIHKPK 72 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + M ++ + E +I+F+++++ + D I L P+ +V NK+D Sbjct: 73 H-KLGDFMLKVSKNTLREVDVIMFMVNAEQKLGKGDEFILEMLAGNPTPVFLVINKIDAI 131 Query: 125 IAQ------RNFYEIYSLDFKEIVEISA 146 ++ E Y DF EIV ISA Sbjct: 132 HPDELMGIIESYKERY--DFAEIVPISA 157 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 3/130 (2%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 KN K I+++GRPNVGKST +NR++G + + TR+ V + + D Sbjct: 5 KNGYKSGFISIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKVQGVLTTDDSQMIFID 64 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 T G+ KP L +K S ++R + + +++A K D I++ + V Sbjct: 65 TPGIHKPKH---KLGDFMLKVSKNTLREVDVIMFMVNAEQKLGKGDEFILEMLAGNPTPV 121 Query: 318 VLALNKWDMV 327 L +NK D + Sbjct: 122 FLVINKIDAI 131 >gi|52082648|ref|YP_081439.1| tRNA modification GTPase TrmE [Bacillus licheniformis ATCC 14580] gi|52788047|ref|YP_093876.1| tRNA modification GTPase TrmE [Bacillus licheniformis ATCC 14580] gi|319648514|ref|ZP_08002730.1| tRNA modification GTPase mnmE [Bacillus sp. BT1B_CT2] gi|81384063|sp|Q65CN1|MNME_BACLD RecName: Full=tRNA modification GTPase mnmE gi|52005859|gb|AAU25801.1| ThdF protein - tRNA modification [Bacillus licheniformis ATCC 14580] gi|52350549|gb|AAU43183.1| ThdF [Bacillus licheniformis ATCC 14580] gi|317389593|gb|EFV70404.1| tRNA modification GTPase mnmE [Bacillus sp. BT1B_CT2] Length = 459 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 41/116 (35%), Positives = 66/116 (56%), Gaps = 3/116 (2%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 I+G PNVGKS+L N LV + A+V + PG TRD + + GV +VDTAGI + ++ Sbjct: 226 IIGRPNVGKSSLLNSLVHETKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDI 285 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + + +++ + EA LIL +++ ++ D I F K + II++ NK D Sbjct: 286 -VERIGVERSRQVLKEADLILLVLNYSESLS--DEDIKLFEATKGMDIIVIVNKTD 338 Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 42/150 (28%), Positives = 80/150 (53%), Gaps = 16/150 (10%) Query: 184 SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVS 243 S + I EG S+V ++GRPNVGKS+L+N L+ + + G TRD + Sbjct: 212 SEQGKILREGISTV----------IIGRPNVGKSSLLNSLVHETKAIVTDIPGTTRDVIE 261 Query: 244 ISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD 303 N + P+ + DTAG+R+ I E + V++S Q ++ + +++L+ + +D Sbjct: 262 EYVNVRGVPLRLVDTAGIRETEDIVERI---GVERSRQVLKEADLILLVLNYSESLSDED 318 Query: 304 LRIVDSVFNTGHAVVLALNKWDMVSDKLNL 333 +++ ++ G +++ +NK D+ KL+L Sbjct: 319 IKLFEA--TKGMDIIVIVNKTDL-EQKLDL 345 >gi|76363849|sp|P0C0C0|ERA_STRP9 RecName: Full=GTPase Era gi|6456490|gb|AAF09161.1|U31915_1 GTP-binding protein homolog [Streptococcus pyogenes] Length = 203 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 44/146 (30%), Positives = 73/146 (50%), Gaps = 5/146 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKST N ++ +K+A++ + TR+++ G +DT GI K Sbjct: 7 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTETEQIVFIDTPGIHKPK 66 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 ++ M + + E +LF++ + D I L+ IP+I+V NK+D Sbjct: 67 -TALGDFMVESAYSTLREVETVLFMVPADEKRGKGDDMIIERLKAAKIPVILVINKIDKV 125 Query: 125 IAQRNFYEI----YSLDFKEIVEISA 146 + +I +DFKE+V ISA Sbjct: 126 HPDQLLEQIDDFRSQMDFKEVVPISA 151 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/137 (27%), Positives = 68/137 (49%), Gaps = 5/137 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKST +N ++G + ++ TR+ + + + I DT G+ KP Sbjct: 7 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTETEQIVFIDTPGIHKPK 66 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +L V+ + ++R ET + ++ A K D I++ + V+L +NK D Sbjct: 67 T---ALGDFMVESAYSTLREVETVLFMVPADEKRGKGDDMIIERLKAAKIPVILVINKID 123 Query: 326 MVSDK--LNLLQDLRTK 340 V L + D R++ Sbjct: 124 KVHPDQLLEQIDDFRSQ 140 >gi|309973499|gb|ADO96700.1| tRNA modification GTPase mnmE [Haemophilus influenzae R2846] Length = 461 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 76/150 (50%), Gaps = 10/150 (6%) Query: 167 YPNHPLEM-----IENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLIN 221 +P+ ++ IE N R + E++ SE K + + +++ + GRPN GKS+L+N Sbjct: 183 FPDEEIDFLADGKIEANLRGIINQLEDVRSEAKQG-SILREGMKVVIAGRPNAGKSSLLN 241 Query: 222 RLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQ 281 L G + +G TRD + + P+ I DTAG+R T+ +E+ + ++ Sbjct: 242 ALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDA---TDEVERIGISRAWT 298 Query: 282 SVRTCETTIVLLDATIPFEKQDLRIVDSVF 311 + + I++LD++ P E DL V S F Sbjct: 299 EIEQADRIILMLDSSDP-ESADLSKVRSEF 327 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 40/121 (33%), Positives = 64/121 (52%), Gaps = 4/121 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + I G PN GKS+L N L ++ A+V + G TRD L I+G+ +I+DTAG+ D Sbjct: 226 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAT 285 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITS-FLRK--KNIPIIIVSNKM 121 + + + + I +A I+ ++DS + + S FL K +P+ IV NK+ Sbjct: 286 D-EVERIGISRAWTEIEQADRIILMLDSSDPESADLSKVRSEFLAKLPSTLPVTIVRNKI 344 Query: 122 D 122 D Sbjct: 345 D 345 >gi|254524023|ref|ZP_05136078.1| GTP-binding protein Era [Stenotrophomonas sp. SKA14] gi|219721614|gb|EED40139.1| GTP-binding protein Era [Stenotrophomonas sp. SKA14] Length = 287 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 51/170 (30%), Positives = 82/170 (48%), Gaps = 8/170 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A++G PNVGKSTL N LV K+++V N P TR RL G A +VDT G+ + Sbjct: 1 MAVIGRPNVGKSTLTNALVGAKVSIVSNRPQTTRHRLLGIATYPEGQLVLVDTPGLHKVQ 60 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 ++ + MN ++ L +I++ D + LR IP+++V NK+D R Sbjct: 61 KRAMNRVMNRAARGSLEGVDAGLLVIEA-GRWDEEDSLAFNVLRDAGIPVVLVVNKID-R 118 Query: 125 IAQRN----FYE--IYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYP 168 + ++ F + DF + ISA+ G L + K+ + P Sbjct: 119 LKEKGALLPFLQQVTEGRDFAAVHPISAQKRNGLEALVRDVLKLLPEAPP 168 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 68/130 (52%), Gaps = 5/130 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK-P 264 +AV+GRPNVGKSTL N L+G + ++ TR + + + + DT G+ K Sbjct: 1 MAVIGRPNVGKSTLTNALVGAKVSIVSNRPQTTRHRLLGIATYPEGQLVLVDTPGLHKVQ 60 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 R + + + S++ V + +++++A ++++D + + + G VVL +NK Sbjct: 61 KRAMNRVMNRAARGSLEGV---DAGLLVIEAG-RWDEEDSLAFNVLRDAGIPVVLVVNKI 116 Query: 325 DMVSDKLNLL 334 D + +K LL Sbjct: 117 DRLKEKGALL 126 >gi|290580024|ref|YP_003484416.1| GTP-binding protein [Streptococcus mutans NN2025] gi|254996923|dbj|BAH87524.1| GTP-binding protein [Streptococcus mutans NN2025] Length = 299 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 47/178 (26%), Positives = 87/178 (48%), Gaps = 5/178 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKST N ++ +K+A++ + TR+++ G + +DT GI K Sbjct: 8 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 ++ M + + E +LF++ + D+ I L+ +P+I+V NK+D Sbjct: 68 -TALGDFMVESAYSTLREVDTVLFMVPADEKRGKGDNMIIERLKAAKVPVILVINKIDKV 126 Query: 125 IAQRNFYEI----YSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 + +I +DF+EIV ISA S L ++ ++ + P + I ++ Sbjct: 127 HPDQLLEQIDDFRNQMDFQEIVPISALQGNNVSHLVDLLVDHLEEGFQYFPADQITDH 184 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 46/170 (27%), Positives = 81/170 (47%), Gaps = 9/170 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKST +N ++G + ++ TR+ + + I DT G+ KP Sbjct: 8 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +L V+ + ++R +T + ++ A K D I++ + V+L +NK D Sbjct: 68 ---TALGDFMVESAYSTLREVDTVLFMVPADEKRGKGDNMIIERLKAAKVPVILVINKID 124 Query: 326 MV--SDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 V L + D R + + +I + I+ + G L DL+V LE Sbjct: 125 KVHPDQLLEQIDDFRNQM--DFQEI--VPISALQGNNVSHLVDLLVDHLE 170 >gi|254490328|ref|ZP_05103517.1| tRNA modification GTPase TrmE [Methylophaga thiooxidans DMS010] gi|224464461|gb|EEF80721.1| tRNA modification GTPase TrmE [Methylophaga thiooxydans DMS010] Length = 419 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 67/119 (56%), Gaps = 1/119 (0%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 ++ + G PN GKS+L N+L A+V + G TRD L Q ++G+ I DTAG+ + Sbjct: 186 SVVLAGQPNAGKSSLHNQLAGHDAAIVTDVAGTTRDVLREQIHLDGLPLRISDTAGLHEA 245 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + + + +T+ + +A IL +ID G+TP D+ I + + + P+ ++ NK+D Sbjct: 246 TSDIVELEGIRRTQNELAQADHILLIIDDSLGMTPQDNKILNDM-PADKPLTVIRNKID 303 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/179 (23%), Positives = 89/179 (49%), Gaps = 25/179 (13%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + + + + G+PN GKS+L N+L G++ + +G TRD + + P+ I DTA Sbjct: 181 LREGISVVLAGQPNAGKSSLHNQLAGHDAAIVTDVAGTTRDVLREQIHLDGLPLRISDTA 240 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+ + + ++ +E + ++++ + + ++++D ++ QD +I++ Sbjct: 241 GLHEAT--SDIVELEGIRRTQNELAQADHILLIIDDSLGMTPQDNKILN----------- 287 Query: 320 ALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINT-----ISGRTGEGLDDLMVSVLE 373 DM +DK L +R K ++ QIG+ +S +TGEG++ L + E Sbjct: 288 -----DMPADK--PLTVIRNKIDRSGHQIGETVEAGRQTIFLSAKTGEGMELLRQHLFE 339 >gi|170695423|ref|ZP_02886568.1| GTP-binding protein Era [Burkholderia graminis C4D1M] gi|170139614|gb|EDT07797.1| GTP-binding protein Era [Burkholderia graminis C4D1M] Length = 287 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 79/150 (52%), Gaps = 9/150 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N LV +K+++ TR R+ G + V + VDT G Sbjct: 2 VAIVGRPNVGKSTLMNALVGQKVSITSRKAQTTRHRITGIHTLEDVQYIFVDTPGFQTKH 61 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + ++ + +N + ILF+I++ P D + + ++P ++++NK+D R Sbjct: 62 SGALNRSLNRAVTSTLTSVDAILFVIEA-GRFGPDDQKVLDLI-PPSVPTLLIANKLD-R 118 Query: 125 IAQRN----FYEIYSL--DFKEIVEISAEH 148 ++ ++ F + S F EIV +SA++ Sbjct: 119 VSDKDSLFPFMQQMSALRPFNEIVPLSAKN 148 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 37/129 (28%), Positives = 70/129 (54%), Gaps = 4/129 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VGRPNVGKSTL+N L+G +T ++ TR ++ ++ DT G + + Sbjct: 2 VAIVGRPNVGKSTLMNALVGQKVSITSRKAQTTRHRITGIHTLEDVQYIFVDTPGFQ--T 59 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + + +L +++ +++ S T I+ + F D +++D + + +++A NK D Sbjct: 60 KHSGAL-NRSLNRAVTSTLTSVDAILFVIEAGRFGPDDQKVLDLIPPSVPTLLIA-NKLD 117 Query: 326 MVSDKLNLL 334 VSDK +L Sbjct: 118 RVSDKDSLF 126 >gi|323345523|ref|ZP_08085746.1| thiophene and furan oxidation protein ThdF [Prevotella oralis ATCC 33269] gi|323093637|gb|EFZ36215.1| thiophene and furan oxidation protein ThdF [Prevotella oralis ATCC 33269] Length = 453 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 64/215 (29%), Positives = 91/215 (42%), Gaps = 54/215 (25%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG NVGKSTL NRL+ + A+V + G TRD + I+ + F +DTAGI Sbjct: 223 VAIVGKTNVGKSTLLNRLLHEDKAIVSDIHGTTRDVIEDTTEIHDITFRFIDTAGI---- 278 Query: 65 NCSIAKQMNDQTEL--------AINEAHLILFLIDSKAGITPYDHAITSFLRKKNI---- 112 + +D+ EL INEA +IL+LID + P + I+ KKNI Sbjct: 279 -----RHTDDKIELLGIERTYQKINEATIILWLIDKQ----PTNEEISEI--KKNIRGKK 327 Query: 113 ----------------------PIIIVSNKMDTRIAQRNFYEIYSLDFKEIVE-----IS 145 PII +S K T I Q + D EI E S Sbjct: 328 LITVWNKIDLENPPPIPTSLQSPIIYISAKQGTNIPQLEDALFQAADIPEIKENDIIITS 387 Query: 146 AEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 A H + H I ++ + N +++ + R Sbjct: 388 ARHYEALTHAHESISRVIEGLQKNLSGDLLSEDLR 422 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 30/93 (32%), Positives = 51/93 (54%), Gaps = 5/93 (5%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + K + +A+VG+ NVGKSTL+NRLL ++ + G TRD + + + DTA Sbjct: 217 LKKGVPVAIVGKTNVGKSTLLNRLLHEDKAIVSDIHGTTRDVIEDTTEIHDITFRFIDTA 276 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVL 292 G+R + +E ++++ Q + E TI+L Sbjct: 277 GIRHTD---DKIELLGIERTYQKIN--EATIIL 304 >gi|157825293|ref|YP_001493013.1| GTP-binding protein Era [Rickettsia akari str. Hartford] gi|189037662|sp|A8GM80|ERA_RICAH RecName: Full=GTPase Era gi|157799251|gb|ABV74505.1| GTP-binding protein Era [Rickettsia akari str. Hartford] Length = 293 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 44/163 (26%), Positives = 85/163 (52%), Gaps = 6/163 (3%) Query: 202 KPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGM 261 + + + ++GRPN GKSTL+NR++G + + TR ++ K+ + ++DT G+ Sbjct: 5 RTISVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGI 64 Query: 262 RKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLAL 321 +P SLE+ V+ + S+ + + ++++D+ PF+ I+D + + + L Sbjct: 65 FEPK---GSLEKAMVRCAWSSLHSADLVMLIIDSLKPFDDVTHDILDKLRSLNIVPIFLL 121 Query: 322 NKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGL 364 NK D+ S L+ D++ I N P I+ +SG+ GL Sbjct: 122 NKIDIESKYLD---DIKAFLIGNHPDSLFFPISALSGKNINGL 161 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/122 (33%), Positives = 65/122 (53%), Gaps = 7/122 (5%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 ++ I+G PN GKSTL NR++ +K+++V TR + G + + DT GI + Sbjct: 8 SVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEP 67 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYD---HAITSFLRKKNIPIIIVSNK 120 K S+ K M +++ A L++ +IDS + P+D H I LR NI I + NK Sbjct: 68 KG-SLEKAMVRCAWSSLHSADLVMLIIDS---LKPFDDVTHDILDKLRSLNIVPIFLLNK 123 Query: 121 MD 122 +D Sbjct: 124 ID 125 >gi|323702013|ref|ZP_08113682.1| small GTP-binding protein [Desulfotomaculum nigrificans DSM 574] gi|323533099|gb|EGB22969.1| small GTP-binding protein [Desulfotomaculum nigrificans DSM 574] Length = 409 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 63/249 (25%), Positives = 119/249 (47%), Gaps = 15/249 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLY-GQAIINGVIFNIVDTAGIADG 63 IAI G N GKS+L N L + +AVV N G T D +Y I+ I+DTAGI D Sbjct: 15 IAIFGRRNAGKSSLINSLTNQDIAVVSNIAGTTTDPVYKSMEILPIGPVVIIDTAGIDD- 73 Query: 64 KNCSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + ++ ++++ + +A L+L +ID+ GIT Y+ + +++++P++ V NK+D Sbjct: 74 --VGLLGELRVEKSKEVLKKADLVLLVIDAAEGITIYEQDLIKECQQRDLPVVTVINKID 131 Query: 123 TRIAQRNFYEIYSLDFKE-IVEISAEHDLGTSELHSVIFKIFKQKYPNHPL--EMIENNK 179 N Y +V +SA G ++L I + + + + + ++++ Sbjct: 132 QNSVTDNDLADYKNTLGTPVVAVSALTGQGVADLKISIIQNAPKSWDDQTIIGDLLQPGD 191 Query: 180 R-------NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTG 232 + +PK + ++++I IAVV + K T+ N + ++T Sbjct: 192 TVVLVVPIDLAAPKGRLILPQVQTIRDILDHDAIAVVAKERELKQTIDNLVCKPKMVVTD 251 Query: 233 SQSGITRDS 241 SQ+ + D+ Sbjct: 252 SQAFLKADA 260 Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 51/173 (29%), Positives = 81/173 (46%), Gaps = 17/173 (9%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWN-WKNHPIEIFDTAGMR 262 L IA+ GR N GKS+LIN L + + + +G T D V S P+ I DTAG+ Sbjct: 13 LHIAIFGRRNAGKSSLINSLTNQDIAVVSNIAGTTTDPVYKSMEILPIGPVVIIDTAGID 72 Query: 263 KPSRITESLEQKTVKKSMQSVRTCETTIVLLDAT--IPFEKQDLRIVDSVFNTGHAVVLA 320 + E V+KS + ++ + ++++DA I +QDL + VV Sbjct: 73 DVGLLGEL----RVEKSKEVLKKADLVLLVIDAAEGITIYEQDL--IKECQQRDLPVVTV 126 Query: 321 LNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 +NK D S N L D + P + +S TG+G+ DL +S+++ Sbjct: 127 INKIDQNSVTDNDLADYKNTL--GTPVVA------VSALTGQGVADLKISIIQ 171 >gi|332559704|ref|ZP_08414026.1| tRNA modification GTPase TrmE [Rhodobacter sphaeroides WS8N] gi|332277416|gb|EGJ22731.1| tRNA modification GTPase TrmE [Rhodobacter sphaeroides WS8N] Length = 428 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 49/182 (26%), Positives = 81/182 (44%), Gaps = 34/182 (18%) Query: 192 EGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNH 251 +G + I +A+VG PN GKSTL+N L +T +G TRD + + + Sbjct: 201 DGSRIAERIRDGFEVAIVGAPNAGKSTLLNALARREAAITSEIAGTTRDVIEVRMDLDGL 260 Query: 252 PIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVF 311 P+ DTAG+R+ S + ESL +++++ + + + LLD + P ++ D V Sbjct: 261 PVTFLDTAGLRETSDLVESL---GIERAVTRAKAADLRVFLLDDSGPLSGITVQADDLVV 317 Query: 312 NTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSV 371 K D+ Q LR +SGRTGEG+ +L+ ++ Sbjct: 318 Q---------GKADLRPG-----QGLR-----------------LSGRTGEGVPELVAAI 346 Query: 372 LE 373 E Sbjct: 347 GE 348 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 37/58 (63%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 + +AIVGAPN GKSTL N L +++ A+ G TRD + + ++G+ +DTAG+ Sbjct: 213 FEVAIVGAPNAGKSTLLNALARREAAITSEIAGTTRDVIEVRMDLDGLPVTFLDTAGL 270 >gi|195978544|ref|YP_002123788.1| GTP-binding protein Era [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|226741237|sp|B4U458|ERA_STREM RecName: Full=GTPase Era gi|195975249|gb|ACG62775.1| GTP-binding protein Era-like [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 298 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 45/146 (30%), Positives = 73/146 (50%), Gaps = 5/146 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKST N ++ +K+A++ + TR+++ G +DT GI K Sbjct: 7 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTETEQIVFIDTPGIHKPK 66 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 ++ M + + E +LF++ + D I L+ IP+I+V NK+D Sbjct: 67 -TALGDFMVESAYSTLREVETVLFMVPADEKRGKGDDMIIERLKAARIPVILVINKIDKV 125 Query: 125 IAQRNFYEI----YSLDFKEIVEISA 146 + +I +DFKEIV ISA Sbjct: 126 HPDQLLEQIDDFRSQMDFKEIVPISA 151 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 38/137 (27%), Positives = 68/137 (49%), Gaps = 5/137 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKST +N ++G + ++ TR+ + + + I DT G+ KP Sbjct: 7 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTETEQIVFIDTPGIHKPK 66 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +L V+ + ++R ET + ++ A K D I++ + V+L +NK D Sbjct: 67 T---ALGDFMVESAYSTLREVETVLFMVPADEKRGKGDDMIIERLKAARIPVILVINKID 123 Query: 326 MV--SDKLNLLQDLRTK 340 V L + D R++ Sbjct: 124 KVHPDQLLEQIDDFRSQ 140 >gi|83942027|ref|ZP_00954489.1| tRNA modification GTPase [Sulfitobacter sp. EE-36] gi|83847847|gb|EAP85722.1| tRNA modification GTPase [Sulfitobacter sp. EE-36] Length = 428 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 50/176 (28%), Positives = 79/176 (44%), Gaps = 35/176 (19%) Query: 193 GKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHP 252 G + + I +A++GRPN GKSTL+N L G + +T + +G TRD + + + P Sbjct: 203 GTHTAERIRTGFEVAIIGRPNAGKSTLLNALAGRDAAITSAVAGTTRDVIEVRMDLGGLP 262 Query: 253 IEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFN 312 + + DTAG+R+ + E++ K E+ DLR+ S Sbjct: 263 VTLLDTAGLREGADEVEAIGIDRAKTR-------------------GEQADLRVFLS--E 301 Query: 313 TGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLM 368 G + +A D+V LR KA + D N ISG TG+G+ L+ Sbjct: 302 EGEDLPVAATADDIV---------LRPKA-----DLRDSADNAISGVTGQGVPQLI 343 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 37/63 (58%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + +AI+G PN GKSTL N L + A+ G TRD + + + G+ ++DTAG+ + Sbjct: 214 FEVAIIGRPNAGKSTLLNALAGRDAAITSAVAGTTRDVIEVRMDLGGLPVTLLDTAGLRE 273 Query: 63 GKN 65 G + Sbjct: 274 GAD 276 >gi|134295165|ref|YP_001118900.1| GTP-binding protein Era [Burkholderia vietnamiensis G4] gi|134138322|gb|ABO54065.1| GTP-binding protein Era [Burkholderia vietnamiensis G4] Length = 299 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 46/150 (30%), Positives = 75/150 (50%), Gaps = 9/150 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N LV +K+++ TR R+ G + F VDT G Sbjct: 14 IAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRITGINTFDDAQFIFVDTPGFQTRH 73 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + ++ + +N + LILF+I++ P D + + P ++++NK+D R Sbjct: 74 STALNRSLNRAVTSTLTSVDLILFVIEA-GRFGPDDQKVLDLI-PPGAPTLLIANKVD-R 130 Query: 125 IAQRN----FYEIYSL--DFKEIVEISAEH 148 + + F + S +F E+V +SA+ Sbjct: 131 VGDKATLFPFMQKMSALREFTELVPLSAQR 160 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/129 (30%), Positives = 66/129 (51%), Gaps = 4/129 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA+VGRPNVGKSTL+N L+G +T ++ TR ++ + + DT G + + Sbjct: 14 IAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRITGINTFDDAQFIFVDTPGFQ--T 71 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 R + +L +++ +++ S T I+ + F D +++D + G +L NK D Sbjct: 72 RHSTAL-NRSLNRAVTSTLTSVDLILFVIEAGRFGPDDQKVLD-LIPPGAPTLLIANKVD 129 Query: 326 MVSDKLNLL 334 V DK L Sbjct: 130 RVGDKATLF 138 >gi|309972853|gb|ADO96054.1| GTP-binding protein [Haemophilus influenzae R2846] Length = 302 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 48/176 (27%), Positives = 83/176 (47%), Gaps = 6/176 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N+++ +K+++ TR R+ G VDT G+ + Sbjct: 13 IAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIKTEGAYQEIYVDTPGLHIEE 72 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN AI + LI+F++D D + + LR P+++ NK+D Sbjct: 73 KRAINRLMNRAASSAIGDVDLIIFVVDG-THWNADDEMVLNKLRNAKAPVVLAINKVDNI 131 Query: 125 IAQRNFYEIYS-----LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 + + + +F IV ISA+ EL ++ + ++ + P + + Sbjct: 132 KNKDDLLPFITDLSGKFNFAHIVPISAQRGNNIHELEKIVRQSLREGVHHFPEDYV 187 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 42/131 (32%), Positives = 70/131 (53%), Gaps = 7/131 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIF-DTAGMR-K 263 IA+VGRPNVGKSTL+N++LG +T ++ TR + + + EI+ DT G+ + Sbjct: 13 IAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRI-VGIKTEGAYQEIYVDTPGLHIE 71 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 R L + ++ V + I ++D T + D +++ + N VVLA+NK Sbjct: 72 EKRAINRLMNRAASSAIGDV---DLIIFVVDGT-HWNADDEMVLNKLRNAKAPVVLAINK 127 Query: 324 WDMVSDKLNLL 334 D + +K +LL Sbjct: 128 VDNIKNKDDLL 138 >gi|242079095|ref|XP_002444316.1| hypothetical protein SORBIDRAFT_07g020060 [Sorghum bicolor] gi|241940666|gb|EES13811.1| hypothetical protein SORBIDRAFT_07g020060 [Sorghum bicolor] Length = 548 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 53/165 (32%), Positives = 84/165 (50%), Gaps = 8/165 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAI+G PNVGKS+L N K + A+V G TRD + I+GV ++DTAGI + Sbjct: 304 IAIIGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVVEANVSIHGVPVTLLDTAGIRETD 363 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFL---RKKN---IPIIIVS 118 + + K ++E A A LI+ I + G T D + + RK + +P+++V Sbjct: 364 DV-VEKIGVKRSEAAAMGADLIVMAISAVDGWTDDDTKLMEHVLINRKSSGSAVPMVLVI 422 Query: 119 NKMDTR-IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKI 162 NK+D +E +S F + V+ A G S+L S + ++ Sbjct: 423 NKVDCAPFVPGEQFEQFSGLFIKHVQTCAVTGKGISDLESAVIEV 467 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 50/188 (26%), Positives = 90/188 (47%), Gaps = 21/188 (11%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + L+IA++GRPNVGKS+L+N R + +G TRD V + + P+ + D Sbjct: 296 KLLQSGLQIAIIGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVVEANVSIHGVPVTLLD 355 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVF----NT 313 TAG+R+ + E + VK+S + + ++ + A + D ++++ V ++ Sbjct: 356 TAGIRETDDVVEKI---GVKRSEAAAMGADLIVMAISAVDGWTDDDTKLMEHVLINRKSS 412 Query: 314 GHAV--VLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTI--SGRTGEGLDDLMV 369 G AV VL +NK D + Q ++I + TG+G+ DL Sbjct: 413 GSAVPMVLVINKVDCAPFVPG----------EQFEQFSGLFIKHVQTCAVTGKGISDLES 462 Query: 370 SVLEINKL 377 +V+E+ + Sbjct: 463 AVIEVRGI 470 >gi|229586356|ref|YP_002844857.1| GTP-binding protein Era [Rickettsia africae ESF-5] gi|228021406|gb|ACP53114.1| GTP-binding protein Era [Rickettsia africae ESF-5] Length = 339 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 47/174 (27%), Positives = 91/174 (52%), Gaps = 6/174 (3%) Query: 202 KPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGM 261 K + + ++GRPN GKSTL+NR++G + + TR ++ K+ + ++DT G+ Sbjct: 51 KTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGI 110 Query: 262 RKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLAL 321 +P SLE+ V+ + S+ + + ++++D+ F+ IVD + + + L Sbjct: 111 FEPKG---SLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNIVDKLRSLNIVPIFLL 167 Query: 322 NKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEIN 375 NK D+ S LN D++ +N P I+ +SG+ +GL + + S +I+ Sbjct: 168 NKIDIESKYLN---DIKAFLTENHPDSLLFPISALSGKNIDGLLEYITSKAKIS 218 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 40/119 (33%), Positives = 61/119 (51%), Gaps = 1/119 (0%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 ++ I+G PN GKSTL NR++ +K+++V TR + G + + DT GI + Sbjct: 54 SVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEP 113 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 K S+ K M +++ A L+L +IDS H I LR NI I + NK+D Sbjct: 114 KG-SLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNIVDKLRSLNIVPIFLLNKID 171 >gi|145628055|ref|ZP_01783856.1| tRNA modification GTPase TrmE [Haemophilus influenzae 22.1-21] gi|144979830|gb|EDJ89489.1| tRNA modification GTPase TrmE [Haemophilus influenzae 22.1-21] Length = 452 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 76/150 (50%), Gaps = 10/150 (6%) Query: 167 YPNHPLEM-----IENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLIN 221 +P+ ++ IE N R + E++ SE K + + +++ + GRPN GKS+L+N Sbjct: 174 FPDEEIDFLADGKIEANLRGIINQLEDVRSEAKQG-SILREGMKVVIAGRPNAGKSSLLN 232 Query: 222 RLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQ 281 L G + +G TRD + + P+ I DTAG+R T+ +E+ + ++ Sbjct: 233 ALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDA---TDEVERIGISRAWT 289 Query: 282 SVRTCETTIVLLDATIPFEKQDLRIVDSVF 311 + + I++LD++ P E DL V S F Sbjct: 290 EIEQADRIILMLDSSDP-ESADLSKVRSEF 318 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/140 (31%), Positives = 72/140 (51%), Gaps = 9/140 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + I G PN GKS+L N L ++ A+V + G TRD L I+G+ +I+DTAG+ D Sbjct: 217 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAT 276 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITS-FLRK--KNIPIIIVSNKM 121 + + + + I +A I+ ++DS + + S FL K +P+ IV NK+ Sbjct: 277 D-EVERIGISRAWTEIEQADRIILMLDSSDPESADLSKVRSEFLAKLPSTLPVTIVRNKI 335 Query: 122 D-----TRIAQRNFYEIYSL 136 D +++ Y+I SL Sbjct: 336 DLNGEQASESEQGGYQIISL 355 >gi|301169727|emb|CBW29328.1| GTPase [Haemophilus influenzae 10810] Length = 452 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 76/150 (50%), Gaps = 10/150 (6%) Query: 167 YPNHPLEM-----IENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLIN 221 +P+ ++ IE N R + E++ SE K + + +++ + GRPN GKS+L+N Sbjct: 174 FPDEEIDFLADGKIEANLRGIINQLEDVRSEAKQG-SILREGMKVVIAGRPNAGKSSLLN 232 Query: 222 RLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQ 281 L G + +G TRD + + P+ I DTAG+R T+ +E+ + ++ Sbjct: 233 ALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDA---TDEVERIGISRAWT 289 Query: 282 SVRTCETTIVLLDATIPFEKQDLRIVDSVF 311 + + I++LD++ P E DL V S F Sbjct: 290 EIEQADRIILMLDSSDP-ESADLSKVRSEF 318 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 40/121 (33%), Positives = 64/121 (52%), Gaps = 4/121 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + I G PN GKS+L N L ++ A+V + G TRD L I+G+ +I+DTAG+ D Sbjct: 217 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAT 276 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITS-FLRK--KNIPIIIVSNKM 121 + + + + I +A I+ ++DS + + S FL K +P+ IV NK+ Sbjct: 277 D-EVERIGISRAWTEIEQADRIILMLDSSDPESADLSKVRSEFLAKLPSTLPVTIVRNKI 335 Query: 122 D 122 D Sbjct: 336 D 336 >gi|294085212|ref|YP_003551972.1| tRNA modification GTPase TrmE [Candidatus Puniceispirillum marinum IMCC1322] gi|292664787|gb|ADE39888.1| tRNA modification GTPase TrmE [Candidatus Puniceispirillum marinum IMCC1322] Length = 458 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 35/127 (27%), Positives = 71/127 (55%), Gaps = 5/127 (3%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 I +++A++G N GKST +N + G + ++T +++G TRD V++ + P+ DTA Sbjct: 227 IRDGVKVALLGSVNAGKSTALNAISGRDAVITSAEAGTTRDIVAVKMDLGGVPVTFMDTA 286 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R + ++E + ++++ Q+ R + +++LD + P L + + H +V Sbjct: 287 GLRDGA---GAIEAEGIRRARQAGRDADFGLIILDGSDPKWPDHLAEISDLTGGQHLIV- 342 Query: 320 ALNKWDM 326 LNK D+ Sbjct: 343 -LNKCDL 348 Score = 41.2 bits (95), Expect = 0.36, Method: Compositional matrix adjust. Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 1/88 (1%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A++G+ N GKST N + + + G TRD + + + GV +DTAG+ DG Sbjct: 233 VALLGSVNAGKSTALNAISGRDAVITSAEAGTTRDIVAVKMDLGGVPVTFMDTAGLRDGA 292 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDS 92 A+ + + A +A L ++D Sbjct: 293 GAIEAEGIR-RARQAGRDADFGLIILDG 319 >gi|289209758|ref|YP_003461824.1| tRNA modification GTPase TrmE [Thioalkalivibrio sp. K90mix] gi|288945389|gb|ADC73088.1| tRNA modification GTPase TrmE [Thioalkalivibrio sp. K90mix] Length = 437 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 52/157 (33%), Positives = 73/157 (46%), Gaps = 15/157 (9%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VGAPNVGKS+L NRL + ++A+V + PG TRD L I+G+ ++DTAG+ Sbjct: 220 LALVGAPNVGKSSLMNRLAESEVAIVTDRPGTTRDVLRSPIAIHGIPVELIDTAGL-HAS 278 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + K + A A LIL L D A+ IP + V NK D Sbjct: 279 DDPVEKIGMQRAREAATGADLILDLRD-----LTRPEAVPELEAPPEIPRLTVWNKQDCV 333 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFK 161 R+ E + ISA G EL I + Sbjct: 334 ADSRS---------TEGIVISARTGAGIDELKQAIVE 361 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 47/177 (26%), Positives = 82/177 (46%), Gaps = 26/177 (14%) Query: 197 VKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIF 256 + ++ LR+A+VG PNVGKS+L+NRL + + G TRD + P+E+ Sbjct: 211 ARYFAQGLRLALVGAPNVGKSSLMNRLAESEVAIVTDRPGTTRDVLRSPIAIHGIPVELI 270 Query: 257 DTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHA 316 DTAG+ + +E+ ++++ ++ + + L D T P +L + Sbjct: 271 DTAGLHASD---DPVEKIGMQRAREAATGADLILDLRDLTRPEAVPELEAPPEIPR---- 323 Query: 317 VVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 + NK D V+D + T+ I IS RTG G+D+L +++E Sbjct: 324 -LTVWNKQDCVADSRS------TEGI------------VISARTGAGIDELKQAIVE 361 >gi|323487692|ref|ZP_08092950.1| tRNA modification GTPase trmE [Planococcus donghaensis MPA1U2] gi|323398426|gb|EGA91214.1| tRNA modification GTPase trmE [Planococcus donghaensis MPA1U2] Length = 461 Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 41/116 (35%), Positives = 67/116 (57%), Gaps = 3/116 (2%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 I+G PNVGKS+L N LV++ A+V G TRD + + GV +VDTAGI + ++ Sbjct: 228 ILGRPNVGKSSLLNSLVQENKAIVTEIAGTTRDIIEEYVNVRGVPLRLVDTAGIRETEDI 287 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + + +++ + EA LIL++++ +TP D + F K++ I+V NK D Sbjct: 288 -VERIGVERSRKVLKEADLILYVLNYAEALTPEDELL--FETVKDMDYIVVINKTD 340 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 56/196 (28%), Positives = 101/196 (51%), Gaps = 20/196 (10%) Query: 174 MIENNK--RNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLT 231 M+E +K R+E +S+GK + + L ++GRPNVGKS+L+N L+ N+ + Sbjct: 196 MLEKSKWVRSEIEKLLQTSSQGKI----LREGLSTVILGRPNVGKSSLLNSLVQENKAIV 251 Query: 232 GSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIV 291 +G TRD + N + P+ + DTAG+R+ I E + V++S + ++ + + Sbjct: 252 TEIAGTTRDIIEEYVNVRGVPLRLVDTAGIRETEDIVERI---GVERSRKVLKEADLILY 308 Query: 292 LLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDI 351 +L+ +D + ++V + + VV +NK D+ K++L Q ++ L GD Sbjct: 309 VLNYAEALTPEDELLFETVKDMDYIVV--INKTDL-PQKIDLEQ------VQKLA--GDK 357 Query: 352 YINTISGRTGEGLDDL 367 + T S EG+D L Sbjct: 358 LLVTTSLVEEEGIDQL 373 >gi|160946598|ref|ZP_02093801.1| hypothetical protein PEPMIC_00556 [Parvimonas micra ATCC 33270] gi|158446982|gb|EDP23977.1| hypothetical protein PEPMIC_00556 [Parvimonas micra ATCC 33270] Length = 468 Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 48/160 (30%), Positives = 84/160 (52%), Gaps = 6/160 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 ++I+G PNVGKS+L NR+++++ A+V + G TRD + ++G+ NI DTAGI D Sbjct: 234 VSIIGKPNVGKSSLLNRILRQERAIVTDIAGTTRDLIKEDIELSGIKLNINDTAGIRD-- 291 Query: 65 NCSIAKQMNDQTELAINE-AHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + +++ Q + +E + L L L D + D I + I+ +D Sbjct: 292 TADVVEKIGVQKSIEASENSDLNLVLFDISRELDEEDEKIINLANTTKSIGILNKVDLDK 351 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 ++ + E ++F E++EISA + G S+L I +F Sbjct: 352 KLNEEKLKE--KVNF-ELIEISALKNEGISKLEQAIIDMF 388 Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 44/141 (31%), Positives = 81/141 (57%), Gaps = 7/141 (4%) Query: 193 GKSSVKNISKP-LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNH 251 G+S+ I K + ++++G+PNVGKS+L+NR+L R + +G TRD + Sbjct: 220 GESNKGKILKDGINVSIIGKPNVGKSSLLNRILRQERAIVTDIAGTTRDLIKEDIELSGI 279 Query: 252 PIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVF 311 + I DTAG+R + + E + V+KS+++ + +VL D + +++D +I+ ++ Sbjct: 280 KLNINDTAGIRDTADVVEKI---GVQKSIEASENSDLNLVLFDISRELDEEDEKII-NLA 335 Query: 312 NTGHAVVLALNKWDMVSDKLN 332 NT ++ + LNK D+ KLN Sbjct: 336 NTTKSIGI-LNKVDL-DKKLN 354 >gi|32265609|ref|NP_859641.1| tRNA modification GTPase TrmE [Helicobacter hepaticus ATCC 51449] gi|32261657|gb|AAP76707.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449] Length = 476 Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 33/111 (29%), Positives = 63/111 (56%), Gaps = 3/111 (2%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 ++I + ++++G+PNVGKS+L+N LL Y R + G TRD++ K + I D Sbjct: 227 QSIIEGYTLSIIGKPNVGKSSLLNALLRYERAIVSEIEGTTRDTIEEMLTIKGSLLRIVD 286 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVD 308 TAG+R+ + +EQ + K+ +++ + + D + PF+ +D I++ Sbjct: 287 TAGIRESD---DKIEQIGILKTKEALMRSNIIVAIFDGSRPFDAEDKAIME 334 Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 42/122 (34%), Positives = 68/122 (55%), Gaps = 3/122 (2%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 YT++I+G PNVGKS+L N L++ + A+V G TRD + I G + IVDTAGI + Sbjct: 233 YTLSIIGKPNVGKSSLLNALLRYERAIVSEIEGTTRDTIEEMLTIKGSLLRIVDTAGIRE 292 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRK--KNIPIIIVSNK 120 + I + +T+ A+ +++I+ + D D AI L+ +N I+++ NK Sbjct: 293 SDD-KIEQIGILKTKEALMRSNIIVAIFDGSRPFDAEDKAIMEILKTQCQNKYILVIINK 351 Query: 121 MD 122 D Sbjct: 352 SD 353 >gi|15806039|ref|NP_294740.1| tRNA modification GTPase TrmE [Deinococcus radiodurans R1] gi|14195298|sp|Q9RVL1|MNME_DEIRA RecName: Full=tRNA modification GTPase mnmE gi|6458744|gb|AAF10590.1|AE001953_4 thiophene and furan oxidation protein [Deinococcus radiodurans R1] Length = 443 Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 42/142 (29%), Positives = 71/142 (50%), Gaps = 11/142 (7%) Query: 165 QKYPNHPLEMIENNKR-----NEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTL 219 Q ++P E + + R +S E + + + + ++ R+A++GRPN GKS+L Sbjct: 182 QALLDYPEEGVPDEDRAAPLLGAQSALEELLASAHAG-RISTRGARLALIGRPNAGKSSL 240 Query: 220 INRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESL-EQKTVKK 278 +N LLGY R + G TRD + P+ + DTAG+R+ TE L E V++ Sbjct: 241 LNALLGYERSIVTPLPGTTRDYLEAGLELAGVPVTLVDTAGLRE----TEDLIEAAGVRQ 296 Query: 279 SMQSVRTCETTIVLLDATIPFE 300 ++ + +VL D + P E Sbjct: 297 AVALAGNADLVLVLEDGSQPRE 318 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 1/88 (1%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A++G PN GKS+L N L+ + ++V PG TRD L + GV +VDTAG+ + + Sbjct: 227 LALIGRPNAGKSSLLNALLGYERSIVTPLPGTTRDYLEAGLELAGVPVTLVDTAGLRETE 286 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDS 92 + A + LA N A L+L L D Sbjct: 287 DLIEAAGVRQAVALAGN-ADLVLVLEDG 313 >gi|312864738|ref|ZP_07724969.1| tRNA modification GTPase TrmE [Streptococcus downei F0415] gi|311099865|gb|EFQ58078.1| tRNA modification GTPase TrmE [Streptococcus downei F0415] Length = 456 Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 38/129 (29%), Positives = 75/129 (58%), Gaps = 5/129 (3%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L A++GRPNVGKS+L+N LL ++ + +G TRD + N K P+++ D Sbjct: 217 KILREGLSTAIIGRPNVGKSSLLNNLLREDKAIVTDVAGTTRDVIEEYVNIKGVPLKLID 276 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ + E + V++S +++ + +++L+ + +QD ++D + + Sbjct: 277 TAGIRETDDLVEKI---GVERSRKALAEADLVLLVLNGSENLSQQDRDLLD-ISKEAKRI 332 Query: 318 VLALNKWDM 326 +L +NK D+ Sbjct: 333 IL-INKTDL 340 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 39/117 (33%), Positives = 64/117 (54%), Gaps = 3/117 (2%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L+++ A+V + G TRD + I GV ++DTAGI + + Sbjct: 226 AIIGRPNVGKSSLLNNLLREDKAIVTDVAGTTRDVIEEYVNIKGVPLKLIDTAGIRETDD 285 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + K +++ A+ EA L+L +++ ++ D + K II+ NK D Sbjct: 286 L-VEKIGVERSRKALAEADLVLLVLNGSENLSQQDRDLLDI--SKEAKRIILINKTD 339 >gi|198274784|ref|ZP_03207316.1| hypothetical protein BACPLE_00943 [Bacteroides plebeius DSM 17135] gi|198272231|gb|EDY96500.1| hypothetical protein BACPLE_00943 [Bacteroides plebeius DSM 17135] Length = 265 Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 53/177 (29%), Positives = 88/177 (49%), Gaps = 11/177 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VG N GKSTL+N LL R + G TRD + + N DTAG+R+ + Sbjct: 17 VAIVGETNAGKSTLLNALLNEERAIVSDIHGTTRDVIEDTMNLGGITFRFIDTAGIRETT 76 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVF--NTGHAVVLALNK 323 ESL +++S Q + + + ++DAT E+Q ++ D + +V+ NK Sbjct: 77 DTIESL---GIERSFQKLDQADIVLWVIDATCA-EEQYRQLADKILPRCKNKHLVIVFNK 132 Query: 324 WDMVS--DKLNLLQDLRTK-AIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKL 377 D++S D Q R K A+ +LP+ D + ++S + EGL L +++ L Sbjct: 133 ADLLSSADSSADKQLARLKAALPDLPE--DACVLSLSAKQKEGLSQLQKQLVDFAAL 187 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 40/119 (33%), Positives = 66/119 (55%), Gaps = 2/119 (1%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG N GKSTL N L+ ++ A+V + G TRD + + G+ F +DTAGI + Sbjct: 17 VAIVGETNAGKSTLLNALLNEERAIVSDIHGTTRDVIEDTMNLGGITFRFIDTAGIRETT 76 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFL-RKKNIPIIIVSNKMD 122 + +I +++ +++A ++L++ID+ Y L R KN ++IV NK D Sbjct: 77 D-TIESLGIERSFQKLDQADIVLWVIDATCAEEQYRQLADKILPRCKNKHLVIVFNKAD 134 >gi|86749731|ref|YP_486227.1| GTP-binding protein Era [Rhodopseudomonas palustris HaA2] gi|86572759|gb|ABD07316.1| GTP-binding protein [Rhodopseudomonas palustris HaA2] Length = 307 Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 81/163 (49%), Gaps = 10/163 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++G PNVGKSTL+N L+G + + TR + I + DT G+ P Sbjct: 17 VALIGAPNVGKSTLVNALVGSKVTIVSRKVQTTRALIRGIVIESGSQIVLVDTPGIFAPK 76 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 R L++ V+ + + VLLDA ++Q I ++ N GH VL LNK D Sbjct: 77 R---RLDRAMVRTAWTGAHDADAVCVLLDARAGIDEQAETIFGNLENVGHPKVLVLNKID 133 Query: 326 MV-SDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDL 367 +V +KL L T+A + + ++ +S +G+G+DDL Sbjct: 134 LVPREKLLAL----TQAANERLRFDETFM--VSALSGDGVDDL 170 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 41/118 (34%), Positives = 60/118 (50%), Gaps = 1/118 (0%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A++GAPNVGKSTL N LV K+ +V TR + G I +G +VDT GI K Sbjct: 17 VALIGAPNVGKSTLVNALVGSKVTIVSRKVQTTRALIRGIVIESGSQIVLVDTPGIFAPK 76 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + + M ++A + L+D++AGI I L P ++V NK+D Sbjct: 77 R-RLDRAMVRTAWTGAHDADAVCVLLDARAGIDEQAETIFGNLENVGHPKVLVLNKID 133 >gi|87198163|ref|YP_495420.1| tRNA modification GTPase TrmE [Novosphingobium aromaticivorans DSM 12444] gi|123491120|sp|Q2GC37|MNME_NOVAD RecName: Full=tRNA modification GTPase mnmE gi|87133844|gb|ABD24586.1| tRNA modification GTPase trmE [Novosphingobium aromaticivorans DSM 12444] Length = 437 Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 39/111 (35%), Positives = 56/111 (50%), Gaps = 2/111 (1%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + + + G PN GKSTLFN LV+ + A+ PG TRD L A ++GV F VDTAG+ D Sbjct: 224 FRVVLAGPPNAGKSTLFNALVEHEAAITAAEPGTTRDLLTHAAALDGVPFTFVDTAGLRD 283 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIP 113 I + + A +A LIL+L G+ P + + + P Sbjct: 284 EGAGEIERIGIARARAAAEKADLILWL--GPEGLGPAGRTLWEIAARADDP 332 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 36/66 (54%) Query: 197 VKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIF 256 + + + R+ + G PN GKSTL N L+ + +T ++ G TRD ++ + P Sbjct: 217 AEPLKEGFRVVLAGPPNAGKSTLFNALVEHEAAITAAEPGTTRDLLTHAAALDGVPFTFV 276 Query: 257 DTAGMR 262 DTAG+R Sbjct: 277 DTAGLR 282 >gi|15892081|ref|NP_359795.1| GTP-binding protein Era [Rickettsia conorii str. Malish 7] gi|21263592|sp|Q92JA9|ERA_RICCN RecName: Full=GTPase Era gi|15619203|gb|AAL02696.1| GTP-binding protein Era [Rickettsia conorii str. Malish 7] Length = 339 Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 47/174 (27%), Positives = 91/174 (52%), Gaps = 6/174 (3%) Query: 202 KPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGM 261 K + + ++GRPN GKSTL+NR++G + + TR ++ K+ + ++DT G+ Sbjct: 51 KTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGI 110 Query: 262 RKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLAL 321 +P SLE+ V+ + S+ + + ++++D+ F+ IVD + + + L Sbjct: 111 FEPKG---SLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNIVDKLRSLNIVPIFLL 167 Query: 322 NKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEIN 375 NK D+ S LN D++ +N P I+ +SG+ +GL + + S +I+ Sbjct: 168 NKIDIESKYLN---DIKAFLTENHPDSLLFPISALSGKNIDGLLEYITSKAKIS 218 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 40/119 (33%), Positives = 61/119 (51%), Gaps = 1/119 (0%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 ++ I+G PN GKSTL NR++ +K+++V TR + G + + DT GI + Sbjct: 54 SVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEP 113 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 K S+ K M +++ A L+L +IDS H I LR NI I + NK+D Sbjct: 114 KG-SLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNIVDKLRSLNIVPIFLLNKID 171 >gi|77408568|ref|ZP_00785304.1| GTP-binding protein Era [Streptococcus agalactiae COH1] gi|77172842|gb|EAO75975.1| GTP-binding protein Era [Streptococcus agalactiae COH1] Length = 299 Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 44/146 (30%), Positives = 73/146 (50%), Gaps = 5/146 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKST N ++ +K+A++ + TR+++ G +DT GI K Sbjct: 8 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTETEQIVFIDTPGIHKPK 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 ++ M + + E +LF++ + D I L+ IP+I+V NK+D Sbjct: 68 -TALGDFMVESAYSTLREVETVLFMVPADEKRGKGDDMIIERLKAAKIPVILVINKIDKV 126 Query: 125 IAQRNFYEI----YSLDFKEIVEISA 146 + +I +DFKE+V ISA Sbjct: 127 HPDQLLEQIDDFRSQMDFKEVVPISA 152 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 38/137 (27%), Positives = 68/137 (49%), Gaps = 5/137 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKST +N ++G + ++ TR+ + + + I DT G+ KP Sbjct: 8 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTETEQIVFIDTPGIHKPK 67 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +L V+ + ++R ET + ++ A K D I++ + V+L +NK D Sbjct: 68 T---ALGDFMVESAYSTLREVETVLFMVPADEKRGKGDDMIIERLKAAKIPVILVINKID 124 Query: 326 MV--SDKLNLLQDLRTK 340 V L + D R++ Sbjct: 125 KVHPDQLLEQIDDFRSQ 141 >gi|304413431|ref|ZP_07394904.1| putative GTPase [Candidatus Regiella insecticola LSR1] gi|304284274|gb|EFL92667.1| putative GTPase [Candidatus Regiella insecticola LSR1] Length = 457 Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 43/173 (24%), Positives = 88/173 (50%), Gaps = 25/173 (14%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + +++ + GRPN GKS+L+N L G + + +G TRD + + P+ I DTA Sbjct: 219 LREGMKVVIAGRPNAGKSSLLNALAGKESAIVTAVAGTTRDVLREYIHIDGMPLHIIDTA 278 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLD-----ATIPFEKQDLRIVDSVFNTG 314 G+R+ S I E + ++++ + ++ + ++D AT+P + R+ ++ Sbjct: 279 GLRETSEIIEKI---GIERAWHEIENADSLLFIVDSSSTEATLPDPELIARLPTTL---- 331 Query: 315 HAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDL 367 +++ NK DM ++ L + +K P I +S +TG+G+++L Sbjct: 332 -PIIVVRNKIDMTDEQCGLTE------VKGYPVI------RLSAKTGQGIENL 371 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 51/169 (30%), Positives = 77/169 (45%), Gaps = 10/169 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + I G PN GKS+L N L K+ A+V G TRD L I+G+ +I+DTAG+ + Sbjct: 225 VVIAGRPNAGKSSLLNALAGKESAIVTAVAGTTRDVLREYIHIDGMPLHIIDTAGLRETS 284 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKA--GITPYDHAITSFLRKKNIPIIIVSNKMD 122 I K ++ I A +LF++DS + P I +PII+V NK+D Sbjct: 285 EI-IEKIGIERAWHEIENADSLLFIVDSSSTEATLPDPELIARL--PTTLPIIVVRNKID 341 Query: 123 TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHP 171 Q E+ ++ +SA+ G L + K + HP Sbjct: 342 MTDEQCGLTEVKGY---PVIRLSAKTGQGIENLQQYLKK--SMGFTQHP 385 >gi|229843939|ref|ZP_04464080.1| tRNA modification GTPase TrmE [Haemophilus influenzae 6P18H1] gi|229812933|gb|EEP48621.1| tRNA modification GTPase TrmE [Haemophilus influenzae 6P18H1] Length = 452 Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 76/150 (50%), Gaps = 10/150 (6%) Query: 167 YPNHPLEM-----IENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLIN 221 +P+ ++ IE N R + E++ SE K + + +++ + GRPN GKS+L+N Sbjct: 174 FPDEEIDFLADGKIEANLRGIINQLEDVRSEAKQG-SILREGMKVVIAGRPNAGKSSLLN 232 Query: 222 RLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQ 281 L G + +G TRD + + P+ I DTAG+R T+ +E+ + ++ Sbjct: 233 ALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDA---TDEVERIGISRAWT 289 Query: 282 SVRTCETTIVLLDATIPFEKQDLRIVDSVF 311 + + I++LD++ P E DL V S F Sbjct: 290 EIEQADRIILMLDSSDP-ESADLSKVRSEF 318 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 40/121 (33%), Positives = 64/121 (52%), Gaps = 4/121 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + I G PN GKS+L N L ++ A+V + G TRD L I+G+ +I+DTAG+ D Sbjct: 217 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAT 276 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITS-FLRK--KNIPIIIVSNKM 121 + + + + I +A I+ ++DS + + S FL K +P+ IV NK+ Sbjct: 277 D-EVERIGISRAWTEIEQADRIILMLDSSDPESADLSKVRSEFLAKLPSTLPVTIVRNKI 335 Query: 122 D 122 D Sbjct: 336 D 336 >gi|34580888|ref|ZP_00142368.1| GTP-binding protein Era [Rickettsia sibirica 246] gi|28262273|gb|EAA25777.1| GTP-binding protein Era [Rickettsia sibirica 246] Length = 339 Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 47/174 (27%), Positives = 91/174 (52%), Gaps = 6/174 (3%) Query: 202 KPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGM 261 K + + ++GRPN GKSTL+NR++G + + TR ++ K+ + ++DT G+ Sbjct: 51 KTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGI 110 Query: 262 RKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLAL 321 +P SLE+ V+ + S+ + + ++++D+ F+ IVD + + + L Sbjct: 111 FEPKG---SLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNIVDKLRSLNIVPIFLL 167 Query: 322 NKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEIN 375 NK D+ S LN D++ +N P I+ +SG+ +GL + + S +I+ Sbjct: 168 NKIDIESKYLN---DIKAFLTENHPDSLLFPISALSGKNIDGLLEYITSKAKIS 218 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 40/119 (33%), Positives = 61/119 (51%), Gaps = 1/119 (0%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 ++ I+G PN GKSTL NR++ +K+++V TR + G + + DT GI + Sbjct: 54 SVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEP 113 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 K S+ K M +++ A L+L +IDS H I LR NI I + NK+D Sbjct: 114 KG-SLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNIVDKLRSLNIVPIFLLNKID 171 >gi|205829161|sp|Q7VJY2|MNME_HELHP RecName: Full=tRNA modification GTPase mnmE Length = 467 Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 33/111 (29%), Positives = 63/111 (56%), Gaps = 3/111 (2%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 ++I + ++++G+PNVGKS+L+N LL Y R + G TRD++ K + I D Sbjct: 218 QSIIEGYTLSIIGKPNVGKSSLLNALLRYERAIVSEIEGTTRDTIEEMLTIKGSLLRIVD 277 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVD 308 TAG+R+ + +EQ + K+ +++ + + D + PF+ +D I++ Sbjct: 278 TAGIRESD---DKIEQIGILKTKEALMRSNIIVAIFDGSRPFDAEDKAIME 325 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 42/122 (34%), Positives = 68/122 (55%), Gaps = 3/122 (2%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 YT++I+G PNVGKS+L N L++ + A+V G TRD + I G + IVDTAGI + Sbjct: 224 YTLSIIGKPNVGKSSLLNALLRYERAIVSEIEGTTRDTIEEMLTIKGSLLRIVDTAGIRE 283 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRK--KNIPIIIVSNK 120 + I + +T+ A+ +++I+ + D D AI L+ +N I+++ NK Sbjct: 284 SDD-KIEQIGILKTKEALMRSNIIVAIFDGSRPFDAEDKAIMEILKTQCQNKYILVIINK 342 Query: 121 MD 122 D Sbjct: 343 SD 344 >gi|116630435|ref|YP_819588.1| tRNA modification GTPase TrmE [Lactobacillus gasseri ATCC 33323] gi|238853335|ref|ZP_04643715.1| tRNA modification GTPase TrmE [Lactobacillus gasseri 202-4] gi|282850777|ref|ZP_06260152.1| tRNA modification GTPase TrmE [Lactobacillus gasseri 224-1] gi|311111579|ref|ZP_07712976.1| tRNA modification GTPase TrmE [Lactobacillus gasseri MV-22] gi|122272628|sp|Q040F3|MNME_LACGA RecName: Full=tRNA modification GTPase mnmE gi|116096017|gb|ABJ61169.1| tRNA modification GTPase trmE [Lactobacillus gasseri ATCC 33323] gi|238834023|gb|EEQ26280.1| tRNA modification GTPase TrmE [Lactobacillus gasseri 202-4] gi|282558185|gb|EFB63772.1| tRNA modification GTPase TrmE [Lactobacillus gasseri 224-1] gi|311066733|gb|EFQ47073.1| tRNA modification GTPase TrmE [Lactobacillus gasseri MV-22] Length = 461 Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 89/168 (52%), Gaps = 17/168 (10%) Query: 167 YPNHPLEMI---ENNKRNEESPKE-----NITSEGKSSVKNISKPLRIAVVGRPNVGKST 218 YP + ++ + E K+ +E K+ EGK I L A+VGRPNVGKS+ Sbjct: 184 YPEYDMDDLTSQEMKKKAQEVSKQIEQLLQTAQEGKI----IRNGLATAIVGRPNVGKSS 239 Query: 219 LINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKK 278 L+N L ++ + +G TRD++ + K P+++ DTAG+ + +E+ V++ Sbjct: 240 LLNYLTQDDKAIVTDIAGTTRDTLEEYVSVKGVPLKLIDTAGIHHTE---DKVEKIGVER 296 Query: 279 SMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 S ++++ + ++LLDA+ +D R++D N ++ LNK D+ Sbjct: 297 SKKAIKEADLVLLLLDASQDLTAEDKRLLDLTANKKRIII--LNKQDL 342 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 45/128 (35%), Positives = 69/128 (53%), Gaps = 1/128 (0%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AIVG PNVGKS+L N L + A+V + G TRD L + GV ++DTAGI ++ Sbjct: 228 AIVGRPNVGKSSLLNYLTQDDKAIVTDIAGTTRDTLEEYVSVKGVPLKLIDTAGIHHTED 287 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 + K ++++ AI EA L+L L+D+ +T D + K II+ + T+I Sbjct: 288 -KVEKIGVERSKKAIKEADLVLLLLDASQDLTAEDKRLLDLTANKKRIIILNKQDLGTKI 346 Query: 126 AQRNFYEI 133 +Q +I Sbjct: 347 SQEMIKDI 354 >gi|331089219|ref|ZP_08338121.1| tRNA modification GTPase TrmE [Lachnospiraceae bacterium 3_1_46FAA] gi|330405771|gb|EGG85300.1| tRNA modification GTPase TrmE [Lachnospiraceae bacterium 3_1_46FAA] Length = 465 Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 49/175 (28%), Positives = 93/175 (53%), Gaps = 14/175 (8%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 I + ++ +VG+PN GKS+L+N L G+ R + G TRD + + + + DTA Sbjct: 224 IKEGIKTVIVGKPNAGKSSLLNVLAGHERAIVTDIEGTTRDVLEETIKLGVLNLNVVDTA 283 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R+ + E + V K+++ T + I ++DA+ ++ D +I++ + + ++VL Sbjct: 284 GIRQTEDLIEKI---GVDKALEYAETADLIIYVVDASRSLDENDEKIINMISDK-KSIVL 339 Query: 320 ALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEI 374 LNK D+ D + + ++ K + N+P I +IS + G+ DL V E+ Sbjct: 340 -LNKSDI--DTVISAEHIKEK-VSNIPII------SISAKEERGIKDLEDKVKEM 384 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 50/158 (31%), Positives = 82/158 (51%), Gaps = 5/158 (3%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVI-FNIVDTAGIADGKN 65 IVG PN GKS+L N L + A+V + G TRD L + I GV+ N+VDTAGI ++ Sbjct: 232 IVGKPNAGKSSLLNVLAGHERAIVTDIEGTTRDVLE-ETIKLGVLNLNVVDTAGIRQTED 290 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 I K D+ A LI++++D+ + D I + + K +++ + +DT I Sbjct: 291 L-IEKIGVDKALEYAETADLIIYVVDASRSLDENDEKIINMISDKKSIVLLNKSDIDTVI 349 Query: 126 AQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 + + E S I+ ISA+ + G +L + ++F Sbjct: 350 SAEHIKEKVS--NIPIISISAKEERGIKDLEDKVKEMF 385 >gi|330443937|ref|YP_004376923.1| tRNA modification GTPase TrmE [Chlamydophila pecorum E58] gi|328807047|gb|AEB41220.1| tRNA modification GTPase TrmE [Chlamydophila pecorum E58] Length = 443 Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 82/317 (25%), Positives = 140/317 (44%), Gaps = 61/317 (19%) Query: 88 FLIDSKAGITPYDHAITSFLRKK-------NIPIIIVSNKMDT-RIAQRNFYEIYSLDFK 139 L + G P + + +FL K I +I S+ +D IAQ + +S + Sbjct: 99 LLNEGARGALPGEFSQRAFLNGKIDLIQAEAIQNLIASDNLDAYHIAQGHLQGRFSQKIQ 158 Query: 140 EIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN-KRNEESPKENITS--EGKSS 196 E+V+I E V+ +++ P+ LE+ E+N ++ E + S EG+ Sbjct: 159 EVVDIIFE----ALAFIEVLADFPEEEQPS--LEIPESNIQKALAMVSEFLDSFDEGQRL 212 Query: 197 VKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIF 256 + S I + G PNVGKS+L+N L NR + G TRD + SW + I + Sbjct: 213 AQGTS----IILAGEPNVGKSSLLNALTQKNRAIVTDIPGTTRDILEESWTLQGKRIRLI 268 Query: 257 DTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHA 316 DTAG R + + +EQ+ + ++ ++ + + + ++DAT P + + +F+ + Sbjct: 269 DTAGQRDTNDL---IEQEGINRARMAMESAQGILWVMDATRPQNP----LPEILFS--KS 319 Query: 317 VVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 L NK D+ + K K NLP++ IS +TGEG+ +L + Sbjct: 320 TFLIWNKIDLAAPK---------KFNTNLPELA------ISTKTGEGILELKTA------ 358 Query: 377 LWKTRITTSYLNSWLQK 393 L WLQK Sbjct: 359 ----------LQQWLQK 365 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 33/89 (37%), Positives = 52/89 (58%), Gaps = 1/89 (1%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 +I + G PNVGKS+L N L +K A+V + PG TRD L + G ++DTAG D Sbjct: 217 SIILAGEPNVGKSSLLNALTQKNRAIVTDIPGTTRDILEESWTLQGKRIRLIDTAGQRD- 275 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDS 92 N I ++ ++ +A+ A IL+++D+ Sbjct: 276 TNDLIEQEGINRARMAMESAQGILWVMDA 304 >gi|91777105|ref|YP_546861.1| tRNA modification GTPase TrmE [Methylobacillus flagellatus KT] gi|123078704|sp|Q1GXL7|MNME_METFK RecName: Full=tRNA modification GTPase mnmE gi|91711092|gb|ABE51020.1| tRNA modification GTPase trmE [Methylobacillus flagellatus KT] Length = 446 Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 41/118 (34%), Positives = 68/118 (57%), Gaps = 2/118 (1%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + +VG PNVGKS+L N+L +++A+V G TRD + ING+ +I DTAG+ + Sbjct: 218 VVLVGQPNVGKSSLMNQLAGEEVAIVTPIAGTTRDTIKNSIQINGITLHITDTAGLRE-T 276 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 N + + +T A+ A + L L+D+ GI + +I + L + +P I + NK+D Sbjct: 277 NDEVEQHGIARTWRALENAGVALLLVDAAHGIGKVEKSILARL-PQFLPKIWIHNKID 333 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 50/181 (27%), Positives = 94/181 (51%), Gaps = 19/181 (10%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + L++ +VG+PNVGKS+L+N+L G + +G TRD++ S + I DTA Sbjct: 212 LREGLQVVLVGQPNVGKSSLMNQLAGEEVAIVTPIAGTTRDTIKNSIQINGITLHITDTA 271 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R+ + + +EQ + ++ +++ ++L+DA K + I+ + Sbjct: 272 GLRETN---DEVEQHGIARTWRALENAGVALLLVDAAHGIGKVEKSILARLPQF------ 322 Query: 320 ALNK-WDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLW 378 L K W + +K+ DL + K Q G+ +I+ +S RTG+G+ L +L+I W Sbjct: 323 -LPKIW--IHNKI----DLESTPPKIEEQDGETHIH-LSARTGDGVHLLRQRLLDIAG-W 373 Query: 379 K 379 + Sbjct: 374 Q 374 >gi|297531687|ref|YP_003672962.1| tRNA modification GTPase TrmE [Geobacillus sp. C56-T3] gi|297254939|gb|ADI28385.1| tRNA modification GTPase TrmE [Geobacillus sp. C56-T3] Length = 462 Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 79/157 (50%), Gaps = 3/157 (1%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 I+G PNVGKS+L N L + A+V + PG TRD + + GV ++DTAGI + ++ Sbjct: 229 IIGRPNVGKSSLLNALAHENRAIVTDIPGTTRDVIEEYVNVRGVPLRLIDTAGIRETEDV 288 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 + + ++++ + A LIL +++ +T D + + + + +I+ + RI Sbjct: 289 -VERIGVERSQQMLKRADLILLVLNYHEPLTEEDERLFAMIEGMDAIVIVNKTDLPRRID 347 Query: 127 QRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 E+ + + +V S H+ G EL I +F Sbjct: 348 MERVKELAA--GRPVVATSLLHEQGIDELEKAIADLF 382 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 38/129 (29%), Positives = 70/129 (54%), Gaps = 5/129 (3%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L ++GRPNVGKS+L+N L NR + G TRD + N + P+ + D Sbjct: 219 KILREGLATVIIGRPNVGKSSLLNALAHENRAIVTDIPGTTRDVIEEYVNVRGVPLRLID 278 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ + E + V++S Q ++ + +++L+ P ++D R+ + G Sbjct: 279 TAGIRETEDVVERI---GVERSQQMLKRADLILLVLNYHEPLTEEDERLFAMI--EGMDA 333 Query: 318 VLALNKWDM 326 ++ +NK D+ Sbjct: 334 IVIVNKTDL 342 >gi|23100946|ref|NP_694413.1| tRNA modification GTPase TrmE [Oceanobacillus iheyensis HTE831] gi|32171820|sp|Q8CX54|MNME_OCEIH RecName: Full=tRNA modification GTPase mnmE gi|22779181|dbj|BAC15447.1| tRNA modification GTPase [Oceanobacillus iheyensis HTE831] Length = 459 Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 39/129 (30%), Positives = 71/129 (55%), Gaps = 5/129 (3%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L A++GRPNVGKS+L+N L+ N+ + G TRD + N + P+ + D Sbjct: 216 KILREGLSTAIIGRPNVGKSSLMNTLVQENKAIVTEIPGTTRDIIEEYVNVRGVPLRLVD 275 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ I E + V +S Q ++ + + +L+ P + D ++ ++V G Sbjct: 276 TAGIRETEDIVERI---GVDRSRQVLKESDLILFVLNYNEPLSEDDKKLFEAV--DGLEY 330 Query: 318 VLALNKWDM 326 ++ +NK D+ Sbjct: 331 IVIINKTDL 339 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 49/160 (30%), Positives = 83/160 (51%), Gaps = 7/160 (4%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N LV++ A+V PG TRD + + GV +VDTAGI + ++ Sbjct: 225 AIIGRPNVGKSSLMNTLVQENKAIVTEIPGTTRDIIEEYVNVRGVPLRLVDTAGIRETED 284 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRI 125 + + D++ + E+ LILF+++ ++ D + F + I++ NK D Sbjct: 285 I-VERIGVDRSRQVLKESDLILFVLNYNEPLSEDDKKL--FEAVDGLEYIVIINKTDLE- 340 Query: 126 AQRNFYEI--YSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 Q + E+ ++ D + +V + + G EL I F Sbjct: 341 QQLDLDEVREFAKD-RPVVTTALLEEQGVDELEKAIADTF 379 >gi|224541282|ref|ZP_03681821.1| hypothetical protein CATMIT_00442 [Catenibacterium mitsuokai DSM 15897] gi|224525786|gb|EEF94891.1| hypothetical protein CATMIT_00442 [Catenibacterium mitsuokai DSM 15897] Length = 445 Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 39/126 (30%), Positives = 68/126 (53%), Gaps = 5/126 (3%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 I + +VG+PNVGKS+L+N LL ++ + +G TRD V S + + + DTA Sbjct: 215 IKDGISTVIVGKPNVGKSSLLNALLEEDKAIVTDIAGTTRDVVEGSIRLNDIVLNMIDTA 274 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R+ + +E VKKS+ + + +V+LD + P E +D +++ G ++ Sbjct: 275 GIRETE---DKIEHMGVKKSLSLIDQADLVLVVLDGSRPIEAEDKELLERT--EGLNRIV 329 Query: 320 ALNKWD 325 +NK D Sbjct: 330 LINKSD 335 Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 40/117 (34%), Positives = 68/117 (58%), Gaps = 5/117 (4%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PNVGKS+L N L+++ A+V + G TRD + G +N ++ N++DTAGI + ++ Sbjct: 223 IVGKPNVGKSSLLNALLEEDKAIVTDIAGTTRDVVEGSIRLNDIVLNMIDTAGIRETEDK 282 Query: 67 SIAKQMNDQTELA-INEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + M + L+ I++A L+L ++D I D + R + + I++ NK D Sbjct: 283 --IEHMGVKKSLSLIDQADLVLVVLDGSRPIEAEDKELLE--RTEGLNRIVLINKSD 335 >gi|170699586|ref|ZP_02890626.1| GTP-binding protein Era [Burkholderia ambifaria IOP40-10] gi|172060070|ref|YP_001807722.1| GTP-binding protein Era [Burkholderia ambifaria MC40-6] gi|170135537|gb|EDT03825.1| GTP-binding protein Era [Burkholderia ambifaria IOP40-10] gi|171992587|gb|ACB63506.1| GTP-binding protein Era [Burkholderia ambifaria MC40-6] Length = 287 Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 42/149 (28%), Positives = 72/149 (48%), Gaps = 7/149 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N LV +K+++ TR R+ G + F VDT G Sbjct: 2 IAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRITGINTFDDAQFVFVDTPGFQTRH 61 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + ++ + +N + +ILF+I++ P D + + +P ++++NK+D Sbjct: 62 STALNRSLNRAVTSTLTSVDVILFVIEA-GRFGPDDQKVLDLI-PPGMPTLLIANKIDRV 119 Query: 125 IAQRNFYEIYS-----LDFKEIVEISAEH 148 + + +F E+V +SA+ Sbjct: 120 TDKATLFPFMQQMSGLREFTELVPLSAQR 148 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 39/129 (30%), Positives = 67/129 (51%), Gaps = 4/129 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA+VGRPNVGKSTL+N L+G +T ++ TR ++ + + DT G + + Sbjct: 2 IAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRITGINTFDDAQFVFVDTPGFQ--T 59 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 R + +L +++ +++ S T I+ + F D +++D + G +L NK D Sbjct: 60 RHSTAL-NRSLNRAVTSTLTSVDVILFVIEAGRFGPDDQKVLD-LIPPGMPTLLIANKID 117 Query: 326 MVSDKLNLL 334 V+DK L Sbjct: 118 RVTDKATLF 126 >gi|24379997|ref|NP_721952.1| GTP-binding protein Era [Streptococcus mutans UA159] gi|26006953|sp|P37214|ERA_STRMU RecName: Full=GTPase Era; AltName: Full=SGP gi|24377985|gb|AAN59258.1|AE014993_2 GTP-binding protein; Era-like protein [Streptococcus mutans UA159] Length = 299 Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 47/178 (26%), Positives = 87/178 (48%), Gaps = 5/178 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKST N ++ +K+A++ + TR+++ G + +DT GI K Sbjct: 8 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 ++ M + + E +LF++ + D+ I L+ +P+I+V NK+D Sbjct: 68 -TALGDFMVESAYSTLREVDTVLFMVPADEKRGKGDNMIIERLKAAKVPVILVINKIDKV 126 Query: 125 IAQRNFYEI----YSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 + +I +DF+EIV ISA S L ++ ++ + P + I ++ Sbjct: 127 HPNQLLEQIDDFRNQMDFQEIVPISALQGNNVSHLVDLLVDHLEEGFQYFPADQITDH 184 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 46/170 (27%), Positives = 82/170 (48%), Gaps = 9/170 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKST +N ++G + ++ TR+ + + I DT G+ KP Sbjct: 8 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +L V+ + ++R +T + ++ A K D I++ + V+L +NK D Sbjct: 68 ---TALGDFMVESAYSTLREVDTVLFMVPADEKRGKGDNMIIERLKAAKVPVILVINKID 124 Query: 326 MV--SDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 V + L + D R + + +I + I+ + G L DL+V LE Sbjct: 125 KVHPNQLLEQIDDFRNQM--DFQEI--VPISALQGNNVSHLVDLLVDHLE 170 >gi|256851187|ref|ZP_05556576.1| GTP-binding protein Era [Lactobacillus jensenii 27-2-CHN] gi|260660611|ref|ZP_05861526.1| GTP-binding protein Era [Lactobacillus jensenii 115-3-CHN] gi|282934653|ref|ZP_06339896.1| GTP-binding protein Era [Lactobacillus jensenii 208-1] gi|297206052|ref|ZP_06923447.1| GTP-binding protein Era [Lactobacillus jensenii JV-V16] gi|256616249|gb|EEU21437.1| GTP-binding protein Era [Lactobacillus jensenii 27-2-CHN] gi|260548333|gb|EEX24308.1| GTP-binding protein Era [Lactobacillus jensenii 115-3-CHN] gi|281301228|gb|EFA93529.1| GTP-binding protein Era [Lactobacillus jensenii 208-1] gi|297149178|gb|EFH29476.1| GTP-binding protein Era [Lactobacillus jensenii JV-V16] Length = 302 Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 80/161 (49%), Gaps = 6/161 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A++G PNVGKSTL N L+ +K+ + N TR+++ G + VDT GI + Sbjct: 12 VALIGRPNVGKSTLMNHLIGQKVVITSNKSQTTRNKISGIFTTENLQAVFVDTPGIHKPQ 71 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N + M+ + ++N+ L+ F+++ + + D I L K +PI ++ NK+D Sbjct: 72 N-KLDDYMDKASLSSLNDVDLVFFMVEPEK-VGKGDEYIADLLSKVKVPIFLIINKIDQV 129 Query: 125 IAQRNFYEIYSLD----FKEIVEISAEHDLGTSELHSVIFK 161 I S F EIV ISA + +L + ++K Sbjct: 130 HPDSLLPVIESYQKLGKFAEIVPISATNGNNMEDLVATLYK 170 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 80/167 (47%), Gaps = 11/167 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKSTL+N L+G ++T ++S TR+ +S + +N DT G+ KP Sbjct: 12 VALIGRPNVGKSTLMNHLIGQKVVITSNKSQTTRNKISGIFTTENLQAVFVDTPGIHKPQ 71 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L+ K S+ S+ + +++ K D I D + + L +NK D Sbjct: 72 N---KLDDYMDKASLSSLNDVDLVFFMVEPE-KVGKGDEYIADLLSKVKVPIFLIINKID 127 Query: 326 MVSDKLNLLQDLRTKAIKNLPQIGDIY-INTISGRTGEGLDDLMVSV 371 V D I++ ++G I IS G ++DL+ ++ Sbjct: 128 QVH------PDSLLPVIESYQKLGKFAEIVPISATNGNNMEDLVATL 168 >gi|145640677|ref|ZP_01796260.1| tRNA modification GTPase [Haemophilus influenzae R3021] gi|145274603|gb|EDK14466.1| tRNA modification GTPase [Haemophilus influenzae 22.4-21] Length = 452 Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 76/150 (50%), Gaps = 10/150 (6%) Query: 167 YPNHPLEM-----IENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLIN 221 +P+ ++ IE N R + E++ SE K + + +++ + GRPN GKS+L+N Sbjct: 174 FPDEEIDFLADGKIEANLRGIINQLEDVRSEAKQG-SILREGMKVVIAGRPNAGKSSLLN 232 Query: 222 RLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQ 281 L G + +G TRD + + P+ I DTAG+R T+ +E+ + ++ Sbjct: 233 ALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDA---TDEVERIGISRAWT 289 Query: 282 SVRTCETTIVLLDATIPFEKQDLRIVDSVF 311 + + I++LD++ P E DL V S F Sbjct: 290 EIEQADRIILMLDSSDP-ESADLSKVRSEF 318 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/140 (31%), Positives = 72/140 (51%), Gaps = 9/140 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + I G PN GKS+L N L ++ A+V + G TRD L I+G+ +I+DTAG+ D Sbjct: 217 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAT 276 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITS-FLRK--KNIPIIIVSNKM 121 + + + + I +A I+ ++DS + + S FL K +P+ IV NK+ Sbjct: 277 D-EVERIGISRAWTEIEQADRIILMLDSSDPESADLSKVRSEFLAKLPSTLPVTIVRNKI 335 Query: 122 D-----TRIAQRNFYEIYSL 136 D +++ Y+I SL Sbjct: 336 DLNGEQASESEQGGYQIISL 355 >gi|89100947|ref|ZP_01173794.1| tRNA modification GTPase [Bacillus sp. NRRL B-14911] gi|89084356|gb|EAR63510.1| tRNA modification GTPase [Bacillus sp. NRRL B-14911] Length = 461 Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 50/166 (30%), Positives = 86/166 (51%), Gaps = 21/166 (12%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PNVGKS+L N LV + A+V + PG TRD + + GV ++DTAGI + ++ Sbjct: 228 IVGRPNVGKSSLLNSLVHENKAIVTDIPGTTRDVIEEYVNVRGVPLRLLDTAGIRETEDI 287 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 + + +++ + EA LIL +++ +T D + F +++ +I++ NK D + Sbjct: 288 -VERIGVERSRQVLKEADLILLVVNYSDELTQEDENL--FKVVEDMDVIVIVNKTD--LP 342 Query: 127 QRNFYEIYSLDFKEIVEISAEH---------DLGTSELHSVIFKIF 163 Q+ +D + + E++A H D G EL I +F Sbjct: 343 QQ-------IDMERVRELAAGHRLVTTSLLEDQGVDELEESISSLF 381 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 37/129 (28%), Positives = 71/129 (55%), Gaps = 5/129 (3%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L +VGRPNVGKS+L+N L+ N+ + G TRD + N + P+ + D Sbjct: 218 KILREGLSTVIVGRPNVGKSSLLNSLVHENKAIVTDIPGTTRDVIEEYVNVRGVPLRLLD 277 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ I E + V++S Q ++ + +++++ + ++D + V + V Sbjct: 278 TAGIRETEDIVERI---GVERSRQVLKEADLILLVVNYSDELTQEDENLFKVVEDMD--V 332 Query: 318 VLALNKWDM 326 ++ +NK D+ Sbjct: 333 IVIVNKTDL 341 >gi|22537642|ref|NP_688493.1| GTP-binding protein Era [Streptococcus agalactiae 2603V/R] gi|25011601|ref|NP_735996.1| GTP-binding protein Era [Streptococcus agalactiae NEM316] gi|76787745|ref|YP_330131.1| GTP-binding protein Era [Streptococcus agalactiae A909] gi|77405197|ref|ZP_00782295.1| GTP-binding protein Era [Streptococcus agalactiae H36B] gi|77413995|ref|ZP_00790168.1| GTP-binding protein Era [Streptococcus agalactiae 515] gi|81453614|sp|Q8DYI1|ERA_STRA5 RecName: Full=GTPase Era gi|81744499|sp|Q8E443|ERA_STRA3 RecName: Full=GTPase Era gi|123601489|sp|Q3K022|ERA_STRA1 RecName: Full=GTPase Era gi|22534528|gb|AAN00366.1|AE014260_22 GTP-binding protein Era [Streptococcus agalactiae 2603V/R] gi|24413141|emb|CAD47219.1| Unknown [Streptococcus agalactiae NEM316] gi|76562802|gb|ABA45386.1| GTP-binding protein Era [Streptococcus agalactiae A909] gi|77159975|gb|EAO71113.1| GTP-binding protein Era [Streptococcus agalactiae 515] gi|77176199|gb|EAO78970.1| GTP-binding protein Era [Streptococcus agalactiae H36B] Length = 299 Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 44/146 (30%), Positives = 73/146 (50%), Gaps = 5/146 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKST N ++ +K+A++ + TR+++ G +DT GI K Sbjct: 8 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTETEQIVFIDTPGIHKPK 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 ++ M + + E +LF++ + D I L+ IP+I+V NK+D Sbjct: 68 -TALGDFMVESAYSTLREVETVLFMVPADEKRGKGDDMIIERLKAAKIPVILVINKIDKV 126 Query: 125 IAQRNFYEI----YSLDFKEIVEISA 146 + +I +DFKE+V ISA Sbjct: 127 HPDQLLEQIDDFRSQMDFKEVVPISA 152 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 38/137 (27%), Positives = 68/137 (49%), Gaps = 5/137 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKST +N ++G + ++ TR+ + + + I DT G+ KP Sbjct: 8 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTETEQIVFIDTPGIHKPK 67 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +L V+ + ++R ET + ++ A K D I++ + V+L +NK D Sbjct: 68 T---ALGDFMVESAYSTLREVETVLFMVPADEKRGKGDDMIIERLKAAKIPVILVINKID 124 Query: 326 MV--SDKLNLLQDLRTK 340 V L + D R++ Sbjct: 125 KVHPDQLLEQIDDFRSQ 141 >gi|90194078|gb|ABD92600.1| ThdF [Phocoenobacter uteri] Length = 436 Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 47/154 (30%), Positives = 79/154 (51%), Gaps = 7/154 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + I G PN GKS+L N L + A+V N G TRD L I+G+ +I+DTAG+ D Sbjct: 208 VVIAGRPNAGKSSLLNALAGRDAAIVTNIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS 267 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITP-YDHAITSFLRK--KNIPIIIVSNKM 121 + + + ++ I +A +L +IDS T FL + +NIP+ ++ NK+ Sbjct: 268 D-EVERIGIERAWGEIEQADHVLLMIDSTESSTENIQTEWQDFLTRLPENIPVTVIRNKV 326 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 D + F ++ + D ++ +SA+ +G L Sbjct: 327 DLSGEKEGFEKLNNFD---LIRLSAQTKVGVELL 357 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 32/135 (23%), Positives = 71/135 (52%), Gaps = 9/135 (6%) Query: 167 YPNHPLEMIENNKRNEE-----SPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLIN 221 +P+ ++ + + K + + +N+ E K I + +++ + GRPN GKS+L+N Sbjct: 165 FPDEEIDFLADGKIENKLNQIIASLDNVRKEAKQG-SIIREGMKVVIAGRPNAGKSSLLN 223 Query: 222 RLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQ 281 L G + + + +G TRD + + P+ I DTAG+R S + +E+ ++++ Sbjct: 224 ALAGRDAAIVTNIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS---DEVERIGIERAWG 280 Query: 282 SVRTCETTIVLLDAT 296 + + ++++D+T Sbjct: 281 EIEQADHVLLMIDST 295 >gi|319745497|gb|EFV97801.1| GTP-binding protein Era [Streptococcus agalactiae ATCC 13813] Length = 314 Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 44/146 (30%), Positives = 73/146 (50%), Gaps = 5/146 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKST N ++ +K+A++ + TR+++ G +DT GI K Sbjct: 23 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTETEQIVFIDTPGIHKPK 82 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 ++ M + + E +LF++ + D I L+ IP+I+V NK+D Sbjct: 83 -TALGDFMVESAYSTLREVETVLFMVPADEKRGKGDDMIIERLKAAKIPVILVINKIDKV 141 Query: 125 IAQRNFYEI----YSLDFKEIVEISA 146 + +I +DFKE+V ISA Sbjct: 142 HPDQLLEQIDDFRSQMDFKEVVPISA 167 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 38/137 (27%), Positives = 68/137 (49%), Gaps = 5/137 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKST +N ++G + ++ TR+ + + + I DT G+ KP Sbjct: 23 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTETEQIVFIDTPGIHKPK 82 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +L V+ + ++R ET + ++ A K D I++ + V+L +NK D Sbjct: 83 T---ALGDFMVESAYSTLREVETVLFMVPADEKRGKGDDMIIERLKAAKIPVILVINKID 139 Query: 326 MV--SDKLNLLQDLRTK 340 V L + D R++ Sbjct: 140 KVHPDQLLEQIDDFRSQ 156 >gi|222151466|ref|YP_002560622.1| hypothetical protein MCCL_1219 [Macrococcus caseolyticus JCSC5402] gi|222120591|dbj|BAH17926.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 300 Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 55/183 (30%), Positives = 83/183 (45%), Gaps = 13/183 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKST N+++ +K+A++ + TR+++ G +DT GI K Sbjct: 10 VAIIGRPNVGKSTFMNKVLGQKVAIMSDKAQTTRNKVQGVLTTEQSQIIFIDTPGIHKPK 69 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + M + + E ILF+++ + I D I L+ PI +V NK+D Sbjct: 70 HM-LGDYMMKVAKNTLREVDAILFMVNVEESIGRGDEFIIELLKNNRTPIFLVLNKIDKI 128 Query: 125 IAQRNFYEIYS----LDFKEIVEISAEHDLGTSELHSVIFKIFKQK---YP-----NHPL 172 EI L F EIV ISA L VI + + YP +HP Sbjct: 129 HPDELIKEIEKYKDLLPFAEIVPISALQGNNVDHLVKVIERYMPEGPMYYPKDQISDHPE 188 Query: 173 EMI 175 E I Sbjct: 189 EFI 191 Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 33/122 (27%), Positives = 59/122 (48%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKST +N++LG + ++ TR+ V + I DT G+ KP Sbjct: 10 VAIIGRPNVGKSTFMNKVLGQKVAIMSDKAQTTRNKVQGVLTTEQSQIIFIDTPGIHKPK 69 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + K K ++ R + + +++ + D I++ + N + L LNK D Sbjct: 70 HMLGDYMMKVAKNTL---REVDAILFMVNVEESIGRGDEFIIELLKNNRTPIFLVLNKID 126 Query: 326 MV 327 + Sbjct: 127 KI 128 >gi|76799814|ref|ZP_00781875.1| GTP-binding protein Era [Streptococcus agalactiae 18RS21] gi|76584832|gb|EAO61529.1| GTP-binding protein Era [Streptococcus agalactiae 18RS21] Length = 242 Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 44/146 (30%), Positives = 73/146 (50%), Gaps = 5/146 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKST N ++ +K+A++ + TR+++ G +DT GI K Sbjct: 8 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTETEQIVFIDTPGIHKPK 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 ++ M + + E +LF++ + D I L+ IP+I+V NK+D Sbjct: 68 -TALGDFMVESAYSTLREVETVLFMVPADEKRGKGDDMIIERLKAAKIPVILVINKIDKV 126 Query: 125 IAQRNFYEI----YSLDFKEIVEISA 146 + +I +DFKE+V ISA Sbjct: 127 HPDQLLEQIDDFRSQMDFKEVVPISA 152 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/137 (27%), Positives = 68/137 (49%), Gaps = 5/137 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKST +N ++G + ++ TR+ + + + I DT G+ KP Sbjct: 8 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTETEQIVFIDTPGIHKPK 67 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +L V+ + ++R ET + ++ A K D I++ + V+L +NK D Sbjct: 68 T---ALGDFMVESAYSTLREVETVLFMVPADEKRGKGDDMIIERLKAAKIPVILVINKID 124 Query: 326 MV--SDKLNLLQDLRTK 340 V L + D R++ Sbjct: 125 KVHPDQLLEQIDDFRSQ 141 >gi|19745599|ref|NP_606735.1| GTP-binding protein Era [Streptococcus pyogenes MGAS8232] gi|21909873|ref|NP_664141.1| GTP-binding protein Era [Streptococcus pyogenes MGAS315] gi|28896432|ref|NP_802782.1| GTP-binding protein Era [Streptococcus pyogenes SSI-1] gi|50913761|ref|YP_059733.1| GTP-binding protein Era [Streptococcus pyogenes MGAS10394] gi|56808804|ref|ZP_00366518.1| COG1159: GTPase [Streptococcus pyogenes M49 591] gi|71903042|ref|YP_279845.1| GTP-binding protein Era [Streptococcus pyogenes MGAS6180] gi|94988021|ref|YP_596122.1| GTP-binding protein Era [Streptococcus pyogenes MGAS9429] gi|94991907|ref|YP_600006.1| GTP-binding protein Era [Streptococcus pyogenes MGAS2096] gi|139474287|ref|YP_001129003.1| GTP-binding protein Era [Streptococcus pyogenes str. Manfredo] gi|209558959|ref|YP_002285431.1| GTP-binding protein Era [Streptococcus pyogenes NZ131] gi|306827874|ref|ZP_07461142.1| GTP-binding protein Era [Streptococcus pyogenes ATCC 10782] gi|54037044|sp|P64088|ERA_STRP8 RecName: Full=GTPase Era gi|54040764|sp|P64087|ERA_STRP3 RecName: Full=GTPase Era gi|73919338|sp|Q5XDG3|ERA_STRP6 RecName: Full=GTPase Era gi|123640374|sp|Q48UW6|ERA_STRPM RecName: Full=GTPase Era gi|189037673|sp|Q1JD46|ERA_STRPB RecName: Full=GTPase Era gi|189037674|sp|Q1JN21|ERA_STRPC RecName: Full=GTPase Era gi|189037677|sp|A2RG20|ERA_STRPG RecName: Full=GTPase Era gi|226741243|sp|B5XK74|ERA_STRPZ RecName: Full=GTPase Era gi|19747725|gb|AAL97234.1| putative GTP-binding protein [Streptococcus pyogenes MGAS8232] gi|21904060|gb|AAM78944.1| putative GTP-binding protein [Streptococcus pyogenes MGAS315] gi|28811683|dbj|BAC64615.1| putative GTP binding protein [Streptococcus pyogenes SSI-1] gi|50902835|gb|AAT86550.1| GTP-binding protein era [Streptococcus pyogenes MGAS10394] gi|71802137|gb|AAX71490.1| putative GTP-binding protein [Streptococcus pyogenes MGAS6180] gi|94541529|gb|ABF31578.1| GTP-binding protein [Streptococcus pyogenes MGAS9429] gi|94545415|gb|ABF35462.1| GTP-binding protein era [Streptococcus pyogenes MGAS2096] gi|134272534|emb|CAM30799.1| GTP-binding protein Era homolog [Streptococcus pyogenes str. Manfredo] gi|209540160|gb|ACI60736.1| GTP-binding protein Era [Streptococcus pyogenes NZ131] gi|304429922|gb|EFM32963.1| GTP-binding protein Era [Streptococcus pyogenes ATCC 10782] Length = 298 Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 44/146 (30%), Positives = 73/146 (50%), Gaps = 5/146 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKST N ++ +K+A++ + TR+++ G +DT GI K Sbjct: 7 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTETEQIVFIDTPGIHKPK 66 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 ++ M + + E +LF++ + D I L+ IP+I+V NK+D Sbjct: 67 -TALGDFMVESAYSTLREVETVLFMVPADEKRGKGDDMIIERLKAAKIPVILVINKIDKV 125 Query: 125 IAQRNFYEI----YSLDFKEIVEISA 146 + +I +DFKE+V ISA Sbjct: 126 HPDQLLEQIDDFRSQMDFKEVVPISA 151 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 38/137 (27%), Positives = 68/137 (49%), Gaps = 5/137 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKST +N ++G + ++ TR+ + + + I DT G+ KP Sbjct: 7 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTETEQIVFIDTPGIHKPK 66 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +L V+ + ++R ET + ++ A K D I++ + V+L +NK D Sbjct: 67 T---ALGDFMVESAYSTLREVETVLFMVPADEKRGKGDDMIIERLKAAKIPVILVINKID 123 Query: 326 MV--SDKLNLLQDLRTK 340 V L + D R++ Sbjct: 124 KVHPDQLLEQIDDFRSQ 140 >gi|308069435|ref|YP_003871040.1| hypothetical protein PPE_02674 [Paenibacillus polymyxa E681] gi|305858714|gb|ADM70502.1| Conserved hypothetical protein [Paenibacillus polymyxa E681] Length = 417 Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 43/121 (35%), Positives = 67/121 (55%), Gaps = 5/121 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYG--QAIINGVIFNIVDTAGIAD 62 I ++G N GKS++ N L + +AVV G T D ++ + + G I +VDTAG+ D Sbjct: 14 IVLLGRRNAGKSSILNTLTGQPVAVVSPVGGTTTDPVFKPMELLPAGPIV-LVDTAGLDD 72 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 I + ++T +N L L +ID+ G+ P++H + LR K IP+I V NK+D Sbjct: 73 --EGEIGELRRNKTLEILNSTDLALLVIDATVGVGPFEHELLEKLRTKKIPVIGVLNKVD 130 Query: 123 T 123 T Sbjct: 131 T 131 Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust. Identities = 35/128 (27%), Positives = 62/128 (48%), Gaps = 11/128 (8%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWN-WKNHPIEIFDTAGMRKP 264 I ++GR N GKS+++N L G + G T D V PI + DTAG+ Sbjct: 14 IVLLGRRNAGKSSILNTLTGQPVAVVSPVGGTTTDPVFKPMELLPAGPIVLVDTAGLDDE 73 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATI---PFEKQDLRIVDSVFNTGHAVVLAL 321 I E KT ++ + + + ++++DAT+ PFE + +++ + V+ L Sbjct: 74 GEIGELRRNKT----LEILNSTDLALLVIDATVGVGPFEHE---LLEKLRTKKIPVIGVL 126 Query: 322 NKWDMVSD 329 NK D +++ Sbjct: 127 NKVDTLTE 134 >gi|239993743|ref|ZP_04714267.1| tRNA modification GTPase [Alteromonas macleodii ATCC 27126] Length = 367 Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 44/122 (36%), Positives = 69/122 (56%), Gaps = 6/122 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + I G PN GKS+L N L + A+V + G TRD L I+G+ +I+DTAG+ + Sbjct: 128 VVIAGRPNAGKSSLLNALAGRDSAIVTDIAGTTRDVLKEHIHIDGMPVHIIDTAGLRESP 187 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAG--ITPYDHAITSFLRK--KNIPIIIVSNK 120 + + + ++ AINEA +LF++DS A I PY+ F+ + + IP+ +V NK Sbjct: 188 D-KVEQIGIERAWQAINEADHVLFVVDSTATAVIDPYE-IWPEFMARLPQGIPVTVVRNK 245 Query: 121 MD 122 D Sbjct: 246 AD 247 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 47/174 (27%), Positives = 89/174 (51%), Gaps = 20/174 (11%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + +++ + GRPN GKS+L+N L G + + +G TRD + + P+ I DTA Sbjct: 122 LREGMQVVIAGRPNAGKSSLLNALAGRDSAIVTDIAGTTRDVLKEHIHIDGMPVHIIDTA 181 Query: 260 GMRK-PSRITESLEQKTVKKSMQSVRTCETTIVLLDATI-----PFEKQDLRIVDSVFNT 313 G+R+ P ++ EQ ++++ Q++ + + ++D+T P+E + + Sbjct: 182 GLRESPDKV----EQIGIERAWQAINEADHVLFVVDSTATAVIDPYEIWPEFM--ARLPQ 235 Query: 314 GHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDL 367 G V + NK D+ + L++ Q T A + GDI + +S + G G+D L Sbjct: 236 GIPVTVVRNKADLST--LDIGQ--STVATEQ----GDISVINLSAKEGSGVDTL 281 >gi|323490066|ref|ZP_08095287.1| GTP-binding protein Era-like protein (Bex protein) [Planococcus donghaensis MPA1U2] gi|323396362|gb|EGA89187.1| GTP-binding protein Era-like protein (Bex protein) [Planococcus donghaensis MPA1U2] Length = 305 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 87/172 (50%), Gaps = 11/172 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 I+I+G PNVGKST NR+V +K+A++ + P TR+++ G N +DT GI + + Sbjct: 13 ISIIGRPNVGKSTFLNRVVGQKIAIMSDKPQTTRNKVQGVVTTNDSQMIFIDTPGINEPR 72 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + M + E ++LF+ + D + L+ ++P+ +V NK+D + Sbjct: 73 H-KLGDFMLKVAKNTFREVDVLLFVASGVDRVGKEDRYVLEMLKGIDVPVFLVINKID-Q 130 Query: 125 IAQRNFYEIY-----SLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHP 171 + N +I DF E + ISA L + + +++ KI ++ P P Sbjct: 131 VHPDNLPKIIESYRNEFDFAEAIPISA---LEGNNVETLLAKI-NERLPEGP 178 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 31/122 (25%), Positives = 56/122 (45%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 I+++GRPNVGKST +NR++G + + TR+ V + + DT G+ +P Sbjct: 13 ISIIGRPNVGKSTFLNRVVGQKIAIMSDKPQTTRNKVQGVVTTNDSQMIFIDTPGINEPR 72 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L +K + + R + + + K+D +++ + V L +NK D Sbjct: 73 H---KLGDFMLKVAKNTFREVDVLLFVASGVDRVGKEDRYVLEMLKGIDVPVFLVINKID 129 Query: 326 MV 327 V Sbjct: 130 QV 131 >gi|326203513|ref|ZP_08193377.1| GTP-binding protein Era [Clostridium papyrosolvens DSM 2782] gi|325986333|gb|EGD47165.1| GTP-binding protein Era [Clostridium papyrosolvens DSM 2782] Length = 298 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 45/147 (30%), Positives = 78/147 (53%), Gaps = 7/147 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 ++++G PNVGKSTL N + +K+A++ + P TR+ + G ++DT GI K Sbjct: 8 VSVIGRPNVGKSTLLNTITGQKIAIMSDKPQTTRNTIRGVITNKECQLILIDTPGIHKPK 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + M + I E L+LFL+++ A D I L++ P+ ++ NK+D Sbjct: 68 -TKLGEYMVNVASETIKEVDLVLFLVEANAQPGAQDINIIQQLKQVKTPVFLILNKVDL- 125 Query: 125 IAQRNFYEI---YS--LDFKEIVEISA 146 +++ I YS ++FK I+ ISA Sbjct: 126 VSKEKLLAIIDSYSKLMNFKAIIPISA 152 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 63/123 (51%), Gaps = 3/123 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 ++V+GRPNVGKSTL+N + G + + TR+++ K + + DT G+ KP Sbjct: 8 VSVIGRPNVGKSTLLNTITGQKIAIMSDKPQTTRNTIRGVITNKECQLILIDTPGIHKPK 67 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + V + ++++ + + L++A QD+ I+ + V L LNK D Sbjct: 68 T---KLGEYMVNVASETIKEVDLVLFLVEANAQPGAQDINIIQQLKQVKTPVFLILNKVD 124 Query: 326 MVS 328 +VS Sbjct: 125 LVS 127 >gi|83646553|ref|YP_434988.1| ferrous iron transport protein B [Hahella chejuensis KCTC 2396] gi|83634596|gb|ABC30563.1| ferrous iron transport protein B [Hahella chejuensis KCTC 2396] Length = 794 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 61/209 (29%), Positives = 94/209 (44%), Gaps = 26/209 (12%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 Y IA+VG PN GK+TLFN L K VGN PG+T +R G+ GV F ++D G Sbjct: 27 YVIAVVGNPNCGKTTLFNALTGSKQR-VGNWPGVTVERKSGRFSFQGVDFELIDLPGTYS 85 Query: 63 GKNCSIAKQMNDQTE---LAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSN 119 C +++Q +A EA LI+ ++D+ + +T L + P++ N Sbjct: 86 LDVCEEDVSLDEQIARDFVAGREADLIINIVDASN--LERNLYLTCQLLEMKTPLLTALN 143 Query: 120 KMDTRIAQRNFYEI-----YSLDFKEIVEISAEHDLGTSELHSVIFKIFKQK-------- 166 MD +A+ + + SL +V I A +G +L + I ++K Sbjct: 144 MMD--VAEERGHAVAHDRLASLLDCPVVPIVAASGVGLPQLKAAILDAARRKHVSNANIA 201 Query: 167 YPNHPLEMIENNKRNEESPKENITSEGKS 195 YP+ E + N +P SEGK Sbjct: 202 YPSPVAEAL-----NALTPMLGAHSEGKC 225 Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust. Identities = 47/212 (22%), Positives = 95/212 (44%), Gaps = 24/212 (11%) Query: 167 YPNHPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGY 226 Y + P + +K SP+ N ++ IAVVG PN GK+TL N L G Sbjct: 2 YQSGPKQFFGESKSIMASPERN------------AEKYVIAVVGNPNCGKTTLFNALTG- 48 Query: 227 NRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITE--SLEQKTVKKSMQSVR 284 ++ G+ G+T + S ++++ E+ D G E SL+++ + + + R Sbjct: 49 SKQRVGNWPGVTVERKSGRFSFQGVDFELIDLPGTYSLDVCEEDVSLDEQ-IARDFVAGR 107 Query: 285 TCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKN 344 + I ++DA+ +++L + + ++ ALN D+ ++ + + R ++ + Sbjct: 108 EADLIINIVDASN--LERNLYLTCQLLEMKTPLLTALNMMDVAEERGHAVAHDRLASLLD 165 Query: 345 LPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 P + I +G GL L ++L+ + Sbjct: 166 CPVV------PIVAASGVGLPQLKAAILDAAR 191 >gi|15674592|ref|NP_268766.1| GTP-binding protein Era [Streptococcus pyogenes M1 GAS] gi|71910203|ref|YP_281753.1| GTP-binding protein Era [Streptococcus pyogenes MGAS5005] gi|81175288|sp|P0C0B9|ERA_STRP1 RecName: Full=GTPase Era gi|13621702|gb|AAK33487.1| GTP-binding protein (GTPase) [Streptococcus pyogenes M1 GAS] gi|71852985|gb|AAZ51008.1| GTP-binding protein homolog [Streptococcus pyogenes MGAS5005] Length = 298 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 44/146 (30%), Positives = 73/146 (50%), Gaps = 5/146 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKST N ++ +K+A++ + TR+++ G +DT GI K Sbjct: 7 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTETEQIVFIDTPGIHKPK 66 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 ++ M + + E +LF++ + D I L+ IP+I+V NK+D Sbjct: 67 -TALGDFMVESAYSTLREVETVLFMVPADEKRGKGDDMIIERLKAAKIPVILVINKIDKV 125 Query: 125 IAQRNFYEI----YSLDFKEIVEISA 146 + +I +DFKE+V ISA Sbjct: 126 HPDQLLEQIDDFHSQMDFKEVVPISA 151 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKST +N ++G + ++ TR+ + + + I DT G+ KP Sbjct: 7 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTETEQIVFIDTPGIHKPK 66 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +L V+ + ++R ET + ++ A K D I++ + V+L +NK D Sbjct: 67 T---ALGDFMVESAYSTLREVETVLFMVPADEKRGKGDDMIIERLKAAKIPVILVINKID 123 Query: 326 MV 327 V Sbjct: 124 KV 125 >gi|95929981|ref|ZP_01312721.1| tRNA modification GTPase TrmE [Desulfuromonas acetoxidans DSM 684] gi|95133950|gb|EAT15609.1| tRNA modification GTPase TrmE [Desulfuromonas acetoxidans DSM 684] Length = 458 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 67/121 (55%), Gaps = 6/121 (4%) Query: 190 TSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWK 249 T G K + + + ++G+PNVGKS+L+N L+G +R + + G TRD + + Sbjct: 210 TLSGYDEGKILREGFSLLILGKPNVGKSSLLNLLVGEDRAIVTNIPGTTRDIIQETITLH 269 Query: 250 NHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE---KQDLRI 306 +PI + DTAG+R + +EQ V ++ + + + + ++D + PF+ QD+++ Sbjct: 270 GYPITVIDTAGIRDSD---DPIEQDGVSRAKNQIGSADVILYMVDGSQPFDISIVQDIKL 326 Query: 307 V 307 + Sbjct: 327 L 327 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 44/123 (35%), Positives = 68/123 (55%), Gaps = 9/123 (7%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 +++ I+G PNVGKS+L N LV + A+V N PG TRD + ++G ++DTAGI D Sbjct: 224 FSLLILGKPNVGKSSLLNLLVGEDRAIVTNIPGTTRDIIQETITLHGYPITVIDTAGIRD 283 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIP---IIIVSN 119 + I + + + I A +IL+++D G P+D +I + K +P I V N Sbjct: 284 SDD-PIEQDGVSRAKNQIGSADVILYMVD---GSQPFDISIVQDI--KLLPADRFIFVVN 337 Query: 120 KMD 122 K D Sbjct: 338 KCD 340 >gi|56422029|ref|YP_149347.1| tRNA modification GTPase TrmE [Geobacillus kaustophilus HTA426] gi|261420902|ref|YP_003254584.1| tRNA modification GTPase TrmE [Geobacillus sp. Y412MC61] gi|319768573|ref|YP_004134074.1| tRNA modification GTPase TrmE [Geobacillus sp. Y412MC52] gi|81346199|sp|Q5KU57|MNME_GEOKA RecName: Full=tRNA modification GTPase mnmE gi|56381871|dbj|BAD77779.1| thiophen/furan oxidation protein [Geobacillus kaustophilus HTA426] gi|261377359|gb|ACX80102.1| tRNA modification GTPase TrmE [Geobacillus sp. Y412MC61] gi|317113439|gb|ADU95931.1| tRNA modification GTPase TrmE [Geobacillus sp. Y412MC52] Length = 462 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 38/129 (29%), Positives = 70/129 (54%), Gaps = 5/129 (3%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L ++GRPNVGKS+L+N L NR + G TRD + N + P+ + D Sbjct: 219 KILREGLATVIIGRPNVGKSSLLNALAHENRAIVTDIPGTTRDVIEEYVNVRGVPLRLID 278 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ + E + V++S Q ++ + +++L+ P ++D R+ + G Sbjct: 279 TAGIRETEDVVERI---GVERSQQMLKRADLILLVLNYHEPLTEEDERLFAMI--EGMDA 333 Query: 318 VLALNKWDM 326 ++ +NK D+ Sbjct: 334 IVIVNKTDL 342 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 79/157 (50%), Gaps = 3/157 (1%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 I+G PNVGKS+L N L + A+V + PG TRD + + GV ++DTAGI + ++ Sbjct: 229 IIGRPNVGKSSLLNALAHENRAIVTDIPGTTRDVIEEYVNVRGVPLRLIDTAGIRETEDV 288 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 + + ++++ + A LIL +++ +T D + + + + +I+ + RI Sbjct: 289 -VERIGVERSQQMLKRADLILLVLNYHEPLTEEDERLFAMIEGMDAIVIVNKTDLPRRID 347 Query: 127 QRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 E+ + + +V S H+ G EL I +F Sbjct: 348 MERVKELAA--GRPVVGTSLLHEQGIDELEKAIADLF 382 >gi|92115738|ref|YP_575467.1| tRNA modification GTPase TrmE [Nitrobacter hamburgensis X14] gi|123265484|sp|Q1QRZ0|MNME_NITHX RecName: Full=tRNA modification GTPase mnmE gi|91798632|gb|ABE61007.1| tRNA modification GTPase trmE [Nitrobacter hamburgensis X14] Length = 457 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 41/136 (30%), Positives = 71/136 (52%), Gaps = 6/136 (4%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+AI G PN GKSTL NRL +++ A+V + G TRD + ++G ++DTAGI + Sbjct: 220 TVAIAGPPNAGKSTLLNRLARREAAIVSPYAGTTRDVIEVHLDLDGYPVTLIDTAGIRE- 278 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + + ++ + A L+L+L D G+ P + + + +P+ +V NK+D Sbjct: 279 TDDPVEQEGVRRARDRAASADLVLWLADDDNGVGP-----SQTIGEGGVPLWLVRNKIDV 333 Query: 124 RIAQRNFYEIYSLDFK 139 A+ + L+ K Sbjct: 334 SGAESDGANPRQLEAK 349 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 52/217 (23%), Positives = 100/217 (46%), Gaps = 20/217 (9%) Query: 186 KENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSIS 245 +E + + +S + + + +A+ G PN GKSTL+NRL + +G TRD + + Sbjct: 203 EETLAASAQS--ERLRDGMTVAIAGPPNAGKSTLLNRLARREAAIVSPYAGTTRDVIEVH 260 Query: 246 WNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLR 305 + +P+ + DTAG+R+ + +EQ+ V+++ + + + L D + + Sbjct: 261 LDLDGYPVTLIDTAGIRE---TDDPVEQEGVRRARDRAASADLVLWLAD-----DDNGVG 312 Query: 306 IVDSVFNTGHAVVLALNKWDMV---SDKLNLLQDLRTKAIKN-LPQIGDIYINTISGRTG 361 ++ G + L NK D+ SD N Q L K + LP+ IS G Sbjct: 313 PSQTIGEGGVPLWLVRNKIDVSGAESDGANPRQ-LEAKPGQGILPR-----HFWISASRG 366 Query: 362 EGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQN 398 +G+D+L+ ++ + W T+ + + LQ+ Sbjct: 367 DGVDELVAALTAFSDGWFGSGETAVITRLRHRNILQD 403 >gi|83815627|ref|YP_446187.1| GTP-binding protein Era [Salinibacter ruber DSM 13855] gi|294508113|ref|YP_003572171.1| GTP-binding protein [Salinibacter ruber M8] gi|83757021|gb|ABC45134.1| GTP-binding protein Era [Salinibacter ruber DSM 13855] gi|294344441|emb|CBH25219.1| GTP-binding protein [Salinibacter ruber M8] Length = 304 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 55/181 (30%), Positives = 88/181 (48%), Gaps = 15/181 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYG--QAIINGVIFNIVDTAGIAD 62 +AIVG PNVGKSTL N L+ +K+++V P TR R+ G + IF +DT GI + Sbjct: 20 VAIVGKPNVGKSTLMNALLGEKLSIVTKKPQTTRHRVLGIHSGPEHQAIF--LDTPGIIE 77 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRK-KNIPIIIVSNKM 121 + ++ + M Q + AI +A L+LFL ++ D T L+K + P +V KM Sbjct: 78 PR-YALHETMMGQVQGAIRDADLLLFLHEATQ-----DEPDTQSLKKIGDTPAFLVLTKM 131 Query: 122 DTRIAQRNFYEIYSLD----FKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 D + + S + F E+V SA+ L ++ + P +P + I Sbjct: 132 DLIPKEETLPLVESYEDRRAFDEVVPTSAKEGFNLQTLLHLVLDTLPEGPPFYPKDRISE 191 Query: 178 N 178 + Sbjct: 192 H 192 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 35/128 (27%), Positives = 62/128 (48%), Gaps = 7/128 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VG+PNVGKSTL+N LLG + + TR V + H DT G+ +P Sbjct: 20 VAIVGKPNVGKSTLMNALLGEKLSIVTKKPQTTRHRVLGIHSGPEHQAIFLDTPGIIEPR 79 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +L + + + ++R + + L +AT ++ D + + + +T L L K D Sbjct: 80 Y---ALHETMMGQVQGAIRDADLLLFLHEATQ--DEPDTQSLKKIGDT--PAFLVLTKMD 132 Query: 326 MVSDKLNL 333 ++ + L Sbjct: 133 LIPKEETL 140 >gi|330040308|ref|XP_003239848.1| GTP-binding protein EngA [Cryptomonas paramecium] gi|327206773|gb|AEA38950.1| GTP-binding protein EngA [Cryptomonas paramecium] Length = 489 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 92/453 (20%), Positives = 191/453 (42%), Gaps = 56/453 (12%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 + ++G NVGK+T N+L P + + Q + I+ T I Sbjct: 67 VVIVIGKKNVGKNTFINKLTGDPEVEPHLLPEYKKYFQFNQKYL------IIHTENILSD 120 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 ++ N ++ +I ++ LI+F+++ K G++ D I FL+ IP+++V+NK + Sbjct: 121 N----FEKNNAKSLFSIRDSSLIIFMVNGKLGLSSEDIKIGEFLKLCQIPVLLVANKCEN 176 Query: 124 RIAQR-NFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNE 182 + + N L F E + +S+ H S L ++ KIFK + N P+ + Sbjct: 177 KDNYKVNLGTFLKLGFGEAIPMSSVHG---SNLKNISSKIFKY-FTNSPVFL-------- 224 Query: 183 ESPKENITSEGKSSVKNISKPLRIAVVGRPNVGK------STLINRLLGYNRLLTGSQSG 236 + I +VG+ N G T +++ ++ ++S Sbjct: 225 ------------------GNFINIGIVGKLNSGNFFETIFPTEKKFGFFFHKKMSTNKSL 266 Query: 237 ITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDAT 296 + ++ + +N N + DT ++ + + S +++R + + +++A Sbjct: 267 LAKECSN--FNIYN----LIDTTPNKQKFSQNNNFDFFLTANS-KTIRQSDCILFIINAM 319 Query: 297 IPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKN-LPQIGDIYINT 355 + ++D ++ S+ ++ + K++ + + + K I+ LP + I Sbjct: 320 VGITEKDRKLAQSINMQKTTCIILVEKYEEIFLQKKIDYCEMVKIIRYFLPLVNWANILF 379 Query: 356 ISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIF-NRYNRLKYIT 414 +S + + S+ + + RI TS +N LQ+ + +Y ++ Y Sbjct: 380 LSSKKKIRYQKIFKSIDIAIEQYNRRIPTSVINEILQEAMKKKGFCVKKKEKYPKIYYSV 439 Query: 415 QIQSSPPSFLIFCTFPNKIPESYKRYLINRLRI 447 Q+ PP+F IF P I ESYKRY+ N+ R+ Sbjct: 440 QLSERPPTFAIFANEPVLIQESYKRYIENQFRV 472 >gi|320333363|ref|YP_004170074.1| GTP-binding protein Era-like-protein [Deinococcus maricopensis DSM 21211] gi|319754652|gb|ADV66409.1| GTP-binding protein Era-like-protein [Deinococcus maricopensis DSM 21211] Length = 302 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 42/132 (31%), Positives = 69/132 (52%), Gaps = 5/132 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYG--QAIINGVIFNIVDTAGIAD 62 +AIVG PNVGKSTL N L+ K+A P TR + G +IF VDT G+ Sbjct: 13 VAIVGKPNVGKSTLLNSLLGVKIAPTSPRPQTTRKHIRGIYNTDTEQIIF--VDTPGLHK 70 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 K+ + K MN++ A+ + I++++D + T D + +R+ P+++V NK+D Sbjct: 71 PKDA-LGKYMNNEVHTALADVDAIIWVVDLRHPPTDEDQLVARQVRELRQPLLLVGNKVD 129 Query: 123 TRIAQRNFYEIY 134 +++Y Sbjct: 130 AAKYPDEAFKLY 141 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 53/120 (44%), Gaps = 3/120 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VG+PNVGKSTL+N LLG T + TR + +N I DT G+ KP Sbjct: 13 VAIVGKPNVGKSTLLNSLLGVKIAPTSPRPQTTRKHIRGIYNTDTEQIIFVDTPGLHKPK 72 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 V ++ V + I ++D P +D + V ++L NK D Sbjct: 73 DALGKYMNNEVHTALADV---DAIIWVVDLRHPPTDEDQLVARQVRELRQPLLLVGNKVD 129 >gi|94989900|ref|YP_598000.1| GTP-binding protein Era [Streptococcus pyogenes MGAS10270] gi|189037675|sp|Q1JI67|ERA_STRPD RecName: Full=GTPase Era gi|94543408|gb|ABF33456.1| GTP-binding protein era [Streptococcus pyogenes MGAS10270] Length = 298 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 44/146 (30%), Positives = 73/146 (50%), Gaps = 5/146 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKST N ++ +K+A++ + TR+++ G +DT GI K Sbjct: 7 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTETEQIVFIDTPGIHKPK 66 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 ++ M + + E +LF++ + D I L+ IP+I+V NK+D Sbjct: 67 -TALGDFMVESAYSTLREVETVLFMVPADEKRGKGDDMIIERLKAAKIPVILVINKIDKV 125 Query: 125 IAQRNFYEI----YSLDFKEIVEISA 146 + +I +DFKE+V ISA Sbjct: 126 HPDQLLEQIDDFRSQMDFKEVVPISA 151 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 38/137 (27%), Positives = 68/137 (49%), Gaps = 5/137 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKST +N ++G + ++ TR+ + + + I DT G+ KP Sbjct: 7 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTETEQIVFIDTPGIHKPK 66 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +L V+ + ++R ET + ++ A K D I++ + V+L +NK D Sbjct: 67 T---ALGDFMVESAYSTLREVETVLFMVPADEKRGKGDDMIIERLKAAKIPVILVINKID 123 Query: 326 MV--SDKLNLLQDLRTK 340 V L + D R++ Sbjct: 124 KVHPDQLLEQIDDFRSQ 140 >gi|123966675|ref|YP_001011756.1| GTP-binding protein Era [Prochlorococcus marinus str. MIT 9515] gi|123201041|gb|ABM72649.1| GTP-binding protein Era [Prochlorococcus marinus str. MIT 9515] Length = 303 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 46/167 (27%), Positives = 85/167 (50%), Gaps = 7/167 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 + ++GRPNVGKSTLIN+L+G +T + TR+ + + I DT G+ KP Sbjct: 9 VTLLGRPNVGKSTLINKLIGEKITITSPVAQTTRNRLKGILTTEFGQIIFVDTPGVHKPH 68 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + L + VK + +++ + I++LD+++ + D I D + + ++ LNKWD Sbjct: 69 HL---LGEILVKNAKSAIKGVDMVILVLDSSVEPGRGDEYIKDFLVSNKTEFIIVLNKWD 125 Query: 326 MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVL 372 +V+ + + LR + + + T+S G G +L+ +L Sbjct: 126 LVNKE---FKSLRLDQYRKVFGTSKSF-QTVSASEGYGCSELINIIL 168 Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 47/177 (26%), Positives = 79/177 (44%), Gaps = 18/177 (10%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYG--QAIINGVIFNIVDTAGIAD 62 + ++G PNVGKSTL N+L+ +K+ + TR+RL G +IF VDT G+ Sbjct: 9 VTLLGRPNVGKSTLINKLIGEKITITSPVAQTTRNRLKGILTTEFGQIIF--VDTPGVHK 66 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + + + + + AI +++ ++DS D I FL IIV NK D Sbjct: 67 PHHL-LGEILVKNAKSAIKGVDMVILVLDSSVEPGRGDEYIKDFLVSNKTEFIIVLNKWD 125 Query: 123 TRIAQRNFYEIYSLDFKEIV-------EISAEHDLGTSELHSVIFKIFKQKYPNHPL 172 + + F + ++++ +SA G SEL ++I P P+ Sbjct: 126 --LVNKEFKSLRLDQYRKVFGTSKSFQTVSASEGYGCSELINIILNFL----PKGPM 176 >gi|332143488|ref|YP_004429226.1| tRNA modification GTPase [Alteromonas macleodii str. 'Deep ecotype'] gi|327553510|gb|AEB00229.1| tRNA modification GTPase [Alteromonas macleodii str. 'Deep ecotype'] Length = 462 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 44/122 (36%), Positives = 69/122 (56%), Gaps = 6/122 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + I G PN GKS+L N L + A+V + G TRD L I+G+ +I+DTAG+ + Sbjct: 223 VVIAGRPNAGKSSLLNALAGRDSAIVTDIAGTTRDVLKEHIHIDGMPVHIIDTAGLRESP 282 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAG--ITPYDHAITSFLRK--KNIPIIIVSNK 120 + + + ++ AINEA +LF++DS A I PY+ F+ + + IP+ +V NK Sbjct: 283 D-KVEQIGIERAWQAINEADHVLFVVDSTATSVIDPYE-IWPEFMARLPQGIPVTVVRNK 340 Query: 121 MD 122 D Sbjct: 341 AD 342 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/170 (27%), Positives = 85/170 (50%), Gaps = 20/170 (11%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 +++ + GRPN GKS+L+N L G + + +G TRD + + P+ I DTAG+R+ Sbjct: 221 MQVVIAGRPNAGKSSLLNALAGRDSAIVTDIAGTTRDVLKEHIHIDGMPVHIIDTAGLRE 280 Query: 264 -PSRITESLEQKTVKKSMQSVRTCETTIVLLDATI-----PFEKQDLRIVDSVFNTGHAV 317 P ++ EQ ++++ Q++ + + ++D+T P+E + + G V Sbjct: 281 SPDKV----EQIGIERAWQAINEADHVLFVVDSTATSVIDPYEIWPEFM--ARLPQGIPV 334 Query: 318 VLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDL 367 + NK D+ + L++ Q Q GDI + +S + G G+D L Sbjct: 335 TVVRNKADLST--LSIGQSSVNT------QQGDISVINLSAKEGSGVDTL 376 >gi|157826149|ref|YP_001493869.1| tRNA modification GTPase TrmE [Rickettsia akari str. Hartford] gi|166234814|sp|A8GPN6|MNME_RICAH RecName: Full=tRNA modification GTPase mnmE gi|157800107|gb|ABV75361.1| tRNA modification GTPase TrmE [Rickettsia akari str. Hartford] Length = 445 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 32/96 (33%), Positives = 62/96 (64%), Gaps = 2/96 (2%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 ++ L++A+VG PN GKS+L+N L+ + + + +G TRD + + +PI + DTA Sbjct: 212 LNSGLKLAIVGPPNTGKSSLLNFLMQRDIAMVSNIAGTTRDIIEGHLDIGGYPIILQDTA 271 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDA 295 G+R+ S ++ +EQ+ +K+++ S +T + I++ DA Sbjct: 272 GIREES--SDIIEQEGIKRAINSAKTADIKIIMFDA 305 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/121 (35%), Positives = 67/121 (55%), Gaps = 9/121 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PN GKS+L N L+++ +A+V N G TRD + G I G + DTAGI + + Sbjct: 218 LAIVGPPNTGKSSLLNFLMQRDIAMVSNIAGTTRDIIEGHLDIGGYPIILQDTAGIRE-E 276 Query: 65 NCSIAKQMNDQTELAINE---AHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM 121 + I +Q + + AIN A + + + D+K + + IT + + I II NK+ Sbjct: 277 SSDIIEQ--EGIKRAINSAKTADIKIIMFDAKKLDSSINEDITGLIDENTIVII---NKI 331 Query: 122 D 122 D Sbjct: 332 D 332 >gi|330991277|ref|ZP_08315228.1| tRNA modification GTPase mnmE [Gluconacetobacter sp. SXCC-1] gi|329761296|gb|EGG77789.1| tRNA modification GTPase mnmE [Gluconacetobacter sp. SXCC-1] Length = 372 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 35/126 (27%), Positives = 68/126 (53%), Gaps = 4/126 (3%) Query: 165 QKYPNHPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLL 224 ++ P + + N R + +EG + + + + L A+VG PNVGKS+L+N L Sbjct: 122 EELPPEVEQELCNGLRELHDTMQAYLAEG-AGAERLRRGLVFAIVGEPNVGKSSLLNALA 180 Query: 225 GYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVR 284 G + + S++G TRD++ + N P+ + DTAG+R+ + +E + V++S+ V+ Sbjct: 181 GRDAAIVSSRAGTTRDAIEVRMVMGNVPVTLVDTAGLRE---TEDEIEAEGVRRSLFHVK 237 Query: 285 TCETTI 290 + + Sbjct: 238 QADCVV 243 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 35/55 (63%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 AIVG PNVGKS+L N L + A+V + G TRD + + ++ V +VDTAG+ Sbjct: 163 AIVGEPNVGKSSLLNALAGRDAAIVSSRAGTTRDAIEVRMVMGNVPVTLVDTAGL 217 >gi|317484428|ref|ZP_07943342.1| tRNA modification GTPase TrmE [Bilophila wadsworthia 3_1_6] gi|316924316|gb|EFV45488.1| tRNA modification GTPase TrmE [Bilophila wadsworthia 3_1_6] Length = 461 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 43/128 (33%), Positives = 68/128 (53%), Gaps = 3/128 (2%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T+A+ G N GKS+L N L+ ++ AVV +PG TRD L + G+ +VDTAG+ + Sbjct: 220 TVALAGPVNAGKSSLMNALLGRQRAVVTEYPGTTRDFLEEPIQLAGLPVRLVDTAGLRET 279 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 N + A+ + + I A ++L ++D G TP A+ S L + I+V NK D Sbjct: 280 DNPAEAQGIQLGRSM-IESADVVLLMVDGTEGTTPDTWALLSELGPER--TILVWNKSDL 336 Query: 124 RIAQRNFY 131 ++Y Sbjct: 337 ATPPPHWY 344 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 45/196 (22%), Positives = 80/196 (40%), Gaps = 26/196 (13%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+ G N GKS+L+N LLG R + G TRD + P+ + DTAG+R+ Sbjct: 221 VALAGPVNAGKSSLMNALLGRQRAVVTEYPGTTRDFLEEPIQLAGLPVRLVDTAGLRETD 280 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 E+ + ++ + + + ++++D T ++ + +L NK D Sbjct: 281 NPAEA---QGIQLGRSMIESADVVLLMVDGTEGTTPDTWALLSELGP--ERTILVWNKSD 335 Query: 326 MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRITTS 385 + + + ++K IS R GEGL+ L +V E+ Sbjct: 336 LATPPPHWYGKEMNLSVKPAAH------AVISARKGEGLETLAEAVRELA---------- 379 Query: 386 YLNSWLQKTQLQNPPP 401 L ++Q Q P P Sbjct: 380 -----LARSQGQEPEP 390 >gi|323126738|gb|ADX24035.1| GTP-binding protein Era [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 259 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 44/146 (30%), Positives = 73/146 (50%), Gaps = 5/146 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKST N ++ +K+A++ + TR+++ G +DT GI K Sbjct: 7 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTETEQIVFIDTPGIHKPK 66 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 ++ M + + E +LF++ + D I L+ IP+I+V NK+D Sbjct: 67 -TALGDFMVESAYSTLREVETVLFMVPADEKRGKGDDMIIERLKAAKIPVILVINKIDKV 125 Query: 125 IAQRNFYEI----YSLDFKEIVEISA 146 + +I +DFKE+V ISA Sbjct: 126 HPDQLLEQIDDFRSQMDFKEVVPISA 151 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 38/137 (27%), Positives = 68/137 (49%), Gaps = 5/137 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKST +N ++G + ++ TR+ + + + I DT G+ KP Sbjct: 7 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTETEQIVFIDTPGIHKPK 66 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +L V+ + ++R ET + ++ A K D I++ + V+L +NK D Sbjct: 67 T---ALGDFMVESAYSTLREVETVLFMVPADEKRGKGDDMIIERLKAAKIPVILVINKID 123 Query: 326 MV--SDKLNLLQDLRTK 340 V L + D R++ Sbjct: 124 KVHPDQLLEQIDDFRSQ 140 >gi|307246406|ref|ZP_07528481.1| tRNA modification GTPase mnmE [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307255391|ref|ZP_07537200.1| tRNA modification GTPase mnmE [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307259841|ref|ZP_07541558.1| tRNA modification GTPase mnmE [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306852686|gb|EFM84916.1| tRNA modification GTPase mnmE [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306861648|gb|EFM93633.1| tRNA modification GTPase mnmE [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306866087|gb|EFM97958.1| tRNA modification GTPase mnmE [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 452 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 50/162 (30%), Positives = 78/162 (48%), Gaps = 23/162 (14%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + I G PN GKS+L N L ++ A+V N G TRD L I+G+ +I+DTAG+ Sbjct: 217 VVIAGRPNAGKSSLLNALAGREAAIVTNIAGTTRDVLREHIHIDGMPLHIIDTAGL---- 272 Query: 65 NCSIAKQMNDQTEL--------AINEAHLILFLIDS-KAGITPYDHAITSFLRK--KNIP 113 ++ ND+ E I +A +L +IDS + + FL K +NIP Sbjct: 273 -----REANDEVEKIGIQRAWDEIEQADHVLLMIDSTEQTAEAFKTEWADFLAKLPQNIP 327 Query: 114 IIIVSNKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 + ++ NK+D E LD ++ +SA+ +G L Sbjct: 328 VTVIRNKVDLSGEAEGLQE---LDGFTLIRLSAQTKVGVDLL 366 Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 63/261 (24%), Positives = 123/261 (47%), Gaps = 47/261 (18%) Query: 43 GQAIINGVIFNIVDTAGIADGKNCSIAKQ--MNDQTELAINEAHLILFLIDSKAGITPYD 100 GQ I++ ++ I+ GI + ++Q +ND+ +LA EA I LID+ + + Sbjct: 84 GQVILDILLKRILTIKGIRIARAGEFSEQAFLNDKLDLAQAEA--IADLIDATS-----E 136 Query: 101 HAITSFLRKKNIPIIIVSNKM----DTRIAQRNFYEIYSLDF-KEIVEISAEHDLGTSEL 155 A S L+ SNK+ D+ I R + E ++DF E ++ A+ + L Sbjct: 137 QAARSALKSLQGEF---SNKINQLVDSVIYLRTYVE-AAIDFPDEEIDFLADGKI-EGHL 191 Query: 156 HSVIFKIFKQKYPNHPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVG 215 + +I ++ N +E+ + I EG +++ + GRPN G Sbjct: 192 NDIIRQL---------------NGVRKEAKQGAILREG----------MKVVIAGRPNAG 226 Query: 216 KSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKT 275 KS+L+N L G + + +G TRD + + P+ I DTAG+R+ + + +E+ Sbjct: 227 KSSLLNALAGREAAIVTNIAGTTRDVLREHIHIDGMPLHIIDTAGLREAN---DEVEKIG 283 Query: 276 VKKSMQSVRTCETTIVLLDAT 296 ++++ + + ++++D+T Sbjct: 284 IQRAWDEIEQADHVLLMIDST 304 >gi|194246565|ref|YP_002004204.1| tRNA modification GTPase TrmE [Candidatus Phytoplasma mali] gi|193806922|emb|CAP18351.1| tRNA modification GTPase [Candidatus Phytoplasma mali] Length = 452 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 48/160 (30%), Positives = 85/160 (53%), Gaps = 12/160 (7%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 I+G PNVGKS+L N ++++ ++V + PG TRD + + G+ +++DTAG+ + ++ Sbjct: 224 IIGRPNVGKSSLLNFFLEEERSIVSDIPGTTRDFVDVYFNLQGITLHLIDTAGVREAED- 282 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD--TR 124 I K +T+ + +A L+L ++D + D + + K+ P I++ NK D T+ Sbjct: 283 KIEKIGVLKTKQLLKKAELVLLVLDQNNCLQSEDKELLNL--TKDYPRILIGNKSDLKTK 340 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFK 164 I ++ E EI+ IS G L + I KI K Sbjct: 341 IEKQQLTE-------EIIFISTIEKKGLELLKNNILKILK 373 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 58/205 (28%), Positives = 98/205 (47%), Gaps = 32/205 (15%) Query: 186 KENITSEGKSSVKNISKPLRIA-------------VVGRPNVGKSTLINRLLGYNRLLTG 232 KENI + K +K I L+ + ++GRPNVGKS+L+N L R + Sbjct: 189 KENILPQTKLLIKEIKNVLKYSYKTRYLKEGVETLIIGRPNVGKSSLLNFFLEEERSIVS 248 Query: 233 SQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVL 292 G TRD V + +N + + + DTAG+R+ + +E+ V K+ Q ++ E +++ Sbjct: 249 DIPGTTRDFVDVYFNLQGITLHLIDTAGVREAE---DKIEKIGVLKTKQLLKKAELVLLV 305 Query: 293 LDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIY 352 LD + +D +++ + +L NK DL+TK K I+ Sbjct: 306 LDQNNCLQSEDKELLN--LTKDYPRILIGNK-----------SDLKTKIEKQQLTEEIIF 352 Query: 353 INTISGRTGEGLDDLMVSVLEINKL 377 I+TI + GL+ L ++L+I KL Sbjct: 353 ISTIEKK---GLELLKNNILKILKL 374 >gi|187924874|ref|YP_001896516.1| GTP-binding protein Era [Burkholderia phytofirmans PsJN] gi|187716068|gb|ACD17292.1| GTP-binding protein Era [Burkholderia phytofirmans PsJN] Length = 299 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 80/150 (53%), Gaps = 9/150 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N LV +K+++ TR R+ G ++ + VDT G Sbjct: 14 VAIVGRPNVGKSTLMNALVGQKVSITSRKAQTTRHRITGIHTLDDAQYIFVDTPGFQTKH 73 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + ++ + +N + ILF+I++ P D + + ++P ++++NK+D R Sbjct: 74 SGALNRSLNRAVTSTLTSVDAILFVIEA-GRFGPDDQKVLDLI-PPSVPTLLIANKLD-R 130 Query: 125 IAQRN-----FYEIYSL-DFKEIVEISAEH 148 ++ ++ ++ +L F EIV +SA++ Sbjct: 131 VSDKDSLFPFMQQVSALHKFAEIVPLSAKN 160 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 37/129 (28%), Positives = 69/129 (53%), Gaps = 4/129 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VGRPNVGKSTL+N L+G +T ++ TR ++ + DT G + + Sbjct: 14 VAIVGRPNVGKSTLMNALVGQKVSITSRKAQTTRHRITGIHTLDDAQYIFVDTPGFQ--T 71 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + + +L +++ +++ S T I+ + F D +++D + + +++A NK D Sbjct: 72 KHSGAL-NRSLNRAVTSTLTSVDAILFVIEAGRFGPDDQKVLDLIPPSVPTLLIA-NKLD 129 Query: 326 MVSDKLNLL 334 VSDK +L Sbjct: 130 RVSDKDSLF 138 >gi|260062619|ref|YP_003195699.1| tRNA modification GTPase TrmE [Robiginitalea biformata HTCC2501] gi|88784186|gb|EAR15356.1| tRNA modification GTPase [Robiginitalea biformata HTCC2501] Length = 462 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 54/183 (29%), Positives = 88/183 (48%), Gaps = 29/183 (15%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + K + +A+ G PNVGKSTL+N LL R + +G TRD++ + DTA Sbjct: 217 LKKGIPVAIAGAPNVGKSTLLNALLREERAIVSEIAGTTRDAIEDEIVLEGIGFRFIDTA 276 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLD---------ATIPFEKQDLRIVDSV 310 G+R+ +++E ++K+ + + I ++D A+ E Q +R Sbjct: 277 GIRETE---DTVEHIGIRKTFEKMEAARVIIYMVDGSRAHPDLLASWSAEIQSIR----E 329 Query: 311 FNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQ-IGDIYINTISGRTGEGLDDLMV 369 + V+L +NK D + DK R + + LP+ +G IS RTGEGL+ L Sbjct: 330 RHPDKPVILLVNKTDRLDDK------ARKQLEEALPEALG------ISARTGEGLEQLQA 377 Query: 370 SVL 372 S+L Sbjct: 378 SLL 380 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 39/123 (31%), Positives = 69/123 (56%), Gaps = 6/123 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI GAPNVGKSTL N L++++ A+V G TRD + + ++ G+ F +DTAGI + + Sbjct: 223 VAIAGAPNVGKSTLLNALLREERAIVSEIAGTTRDAIEDEIVLEGIGFRFIDTAGIRETE 282 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAG----ITPYDHAITSFL-RKKNIPIIIVSN 119 + ++ +T + A +I++++D + + I S R + P+I++ N Sbjct: 283 D-TVEHIGIRKTFEKMEAARVIIYMVDGSRAHPDLLASWSAEIQSIRERHPDKPVILLVN 341 Query: 120 KMD 122 K D Sbjct: 342 KTD 344 >gi|126738505|ref|ZP_01754210.1| tRNA modification GTPase [Roseobacter sp. SK209-2-6] gi|126720304|gb|EBA17010.1| tRNA modification GTPase [Roseobacter sp. SK209-2-6] Length = 428 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 52/187 (27%), Positives = 83/187 (44%), Gaps = 43/187 (22%) Query: 191 SEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKN 250 ++G + I + +A++G PNVGKSTL+N L G +T +G TRD + + + Sbjct: 201 TQGVQIAERIREGFEVAIIGAPNVGKSTLLNALAGREAAITSEYAGTTRDIIEVRMDLSG 260 Query: 251 HPIEIFDTAGMRKPSRITE----SLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRI 306 P+ + DTAG+R+ E +L +K + + V CE E +DL + Sbjct: 261 LPVTLLDTAGLRETEDHVEGIGIALAKKRAEDADLRVFLCE------------EDEDLEL 308 Query: 307 VDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDD 366 F +G D+R K +L D N+ISG +G GLD Sbjct: 309 ---TFCSG---------------------DIRLKPKADLR---DDKENSISGASGYGLDS 341 Query: 367 LMVSVLE 373 L+ ++ E Sbjct: 342 LVSAISE 348 Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 50/84 (59%), Gaps = 6/84 (7%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI-- 60 + +AI+GAPNVGKSTL N L ++ A+ + G TRD + + ++G+ ++DTAG+ Sbjct: 214 FEVAIIGAPNVGKSTLLNALAGREAAITSEYAGTTRDIIEVRMDLSGLPVTLLDTAGLRE 273 Query: 61 ----ADGKNCSIAKQMNDQTELAI 80 +G ++AK+ + +L + Sbjct: 274 TEDHVEGIGIALAKKRAEDADLRV 297 >gi|310830137|ref|YP_003962494.1| tRNA modification GTPase TrmE [Eubacterium limosum KIST612] gi|308741871|gb|ADO39531.1| tRNA modification GTPase TrmE [Eubacterium limosum KIST612] Length = 458 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 53/179 (29%), Positives = 87/179 (48%), Gaps = 12/179 (6%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T AI+G PNVGKS+L N L+ + A+V PG TRD + I G+ F I+DTAGI + Sbjct: 229 TTAILGEPNVGKSSLLNTLLMENKAIVTEIPGTTRDIIEEYINIGGIPFKIIDTAGIRET 288 Query: 64 KNCSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 N + +Q+ +++ I +LILF+ D + + + L I ++NK D Sbjct: 289 DN--LVEQIGVEKSRQLIKNTNLILFMTDLSRPFSEEEKTLIEELDPSK--TIFIANKTD 344 Query: 123 TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRN 181 + I R+ E + + +S + D G L + ++ + + I NN R+ Sbjct: 345 SMIENRDVPEGW-------LPLSLKEDEGVEALKDKMLEMVMGGSVDQEADYIVNNVRH 396 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 34/104 (32%), Positives = 59/104 (56%), Gaps = 3/104 (2%) Query: 207 AVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSR 266 A++G PNVGKS+L+N LL N+ + G TRD + N P +I DTAG+R+ Sbjct: 231 AILGEPNVGKSSLLNTLLMENKAIVTEIPGTTRDIIEEYINIGGIPFKIIDTAGIRETDN 290 Query: 267 ITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSV 310 + +EQ V+KS Q ++ + + D + PF +++ +++ + Sbjct: 291 L---VEQIGVEKSRQLIKNTNLILFMTDLSRPFSEEEKTLIEEL 331 >gi|238809998|dbj|BAH69788.1| hypothetical protein [Mycoplasma fermentans PG18] Length = 450 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 30/91 (32%), Positives = 56/91 (61%), Gaps = 3/91 (3%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 I +++A++G+PNVGKS+++N L+ ++ + Q+G TRD V S+ ++ DTA Sbjct: 218 IFDGIKVAILGKPNVGKSSILNCLINEDKAIVTDQAGTTRDLVEASYQIDGLLFKLVDTA 277 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTI 290 G+RK +R +E+ ++KS + + C+ I Sbjct: 278 GIRKTNR---KIEKIGIEKSFEQIEKCDVVI 305 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 67/118 (56%), Gaps = 1/118 (0%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKS++ N L+ + A+V + G TRD + I+G++F +VDTAGI Sbjct: 224 VAILGKPNVGKSSILNCLINEDKAIVTDQAGTTRDLVEASYQIDGLLFKLVDTAGIRK-T 282 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 N I K +++ I + +++ + ++ YD + ++ N P+I V NK+D Sbjct: 283 NRKIEKIGIEKSFEQIEKCDVVIHVNEANTLENDYDKKVEKLAKQFNKPLIKVINKVD 340 >gi|194333061|ref|YP_002014921.1| tRNA modification GTPase TrmE [Prosthecochloris aestuarii DSM 271] gi|194310879|gb|ACF45274.1| tRNA modification GTPase TrmE [Prosthecochloris aestuarii DSM 271] Length = 476 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 48/197 (24%), Positives = 94/197 (47%), Gaps = 17/197 (8%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 +S+ + A++GRPN GKSTL+N LLG R + G TRD + + + + DTA Sbjct: 230 LSEGVATAIIGRPNAGKSTLLNALLGEERAIVSHMPGTTRDYIEECFVYDKTMFRLTDTA 289 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNT--GHAV 317 G+R+ E +E + +++S + + + + L+D + +++ + ++ G + Sbjct: 290 GLREA---VEEIEHEGIRRSYEKIAQADLILYLMDISAGDFAEEIAAIRTIAAQYPGTKM 346 Query: 318 VLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDL---MVSVLE- 373 ++A NK D + +Q + Q + IS EGLD+L M ++ E Sbjct: 347 LVAANKTDRTASCEERMQ--------MVGQETGCMVLGISALQQEGLDELKKAMGAMTEN 398 Query: 374 INKLWKTRITTSYLNSW 390 ++KL + + + + Sbjct: 399 LDKLHDASVLVTSMRHY 415 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 34/90 (37%), Positives = 53/90 (58%), Gaps = 1/90 (1%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PN GKSTL N L+ ++ A+V + PG TRD + + + +F + DTAG+ + Sbjct: 237 AIIGRPNAGKSTLLNALLGEERAIVSHMPGTTRDYIEECFVYDKTMFRLTDTAGLREAVE 296 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAG 95 I + ++ I +A LIL+L+D AG Sbjct: 297 -EIEHEGIRRSYEKIAQADLILYLMDISAG 325 >gi|126724526|ref|ZP_01740369.1| tRNA modification GTPase [Rhodobacterales bacterium HTCC2150] gi|126705690|gb|EBA04780.1| tRNA modification GTPase [Rhodobacterales bacterium HTCC2150] Length = 430 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 1/91 (1%) Query: 193 GKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHP 252 G ++ + I +A+VG PN GKSTL+N L G +T +G TRD + + + + P Sbjct: 204 GSTAAERIRDGFEVAIVGAPNSGKSTLLNALAGREAAITSEIAGTTRDVIEVRMDLRGLP 263 Query: 253 IEIFDTAGMRKPSRITESLE-QKTVKKSMQS 282 + I DTAG+RK E L Q K++ Q+ Sbjct: 264 VTILDTAGLRKTDDHVEGLGIQLAEKRAAQA 294 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 6/84 (7%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI-- 60 + +AIVGAPN GKSTL N L ++ A+ G TRD + + + G+ I+DTAG+ Sbjct: 215 FEVAIVGAPNSGKSTLLNALAGREAAITSEIAGTTRDVIEVRMDLRGLPVTILDTAGLRK 274 Query: 61 ----ADGKNCSIAKQMNDQTELAI 80 +G +A++ Q +L + Sbjct: 275 TDDHVEGLGIQLAEKRAAQADLRV 298 >gi|325523761|gb|EGD02015.1| GTPase Era [Burkholderia sp. TJI49] Length = 299 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 46/150 (30%), Positives = 74/150 (49%), Gaps = 9/150 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N LV +K+++ TR R+ G F VDT G Sbjct: 14 IAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRITGINTTEDAQFIFVDTPGFQTRH 73 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + ++ + +N + ILF+I++ P D + + P ++++NK+D R Sbjct: 74 STALNRSLNRAVTSTLTSVDAILFVIEA-GRFGPDDQKVLDLI-PPGTPTLLIANKLD-R 130 Query: 125 IAQRN----FYEIYSL--DFKEIVEISAEH 148 + ++ F + S +F EIV +SA+ Sbjct: 131 VGDKDTLFPFMQQMSTLREFAEIVPLSAKQ 160 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/129 (30%), Positives = 66/129 (51%), Gaps = 4/129 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA+VGRPNVGKSTL+N L+G +T ++ TR ++ ++ DT G + + Sbjct: 14 IAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRITGINTTEDAQFIFVDTPGFQ--T 71 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 R + +L +++ +++ S T I+ + F D +++D + G +L NK D Sbjct: 72 RHSTAL-NRSLNRAVTSTLTSVDAILFVIEAGRFGPDDQKVLD-LIPPGTPTLLIANKLD 129 Query: 326 MVSDKLNLL 334 V DK L Sbjct: 130 RVGDKDTLF 138 >gi|320449719|ref|YP_004201815.1| GTP-binding protein Era [Thermus scotoductus SA-01] gi|320149888|gb|ADW21266.1| GTP-binding protein Era [Thermus scotoductus SA-01] Length = 301 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 66/121 (54%), Gaps = 3/121 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N L+ K+A + P TR RL G VDT G+ Sbjct: 10 VAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGNRQIVFVDTPGLHKPM 69 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRK--KNIPIIIVSNKMD 122 + ++ + M+ + A+++ + +++++D + TP D + L+ +PI++V NK+D Sbjct: 70 D-ALGEFMDQEVYEALSDVNAVVWVVDLRHPPTPEDELVAKALKPLVGKVPILLVGNKLD 128 Query: 123 T 123 Sbjct: 129 A 129 Score = 43.9 bits (102), Expect = 0.063, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 37/78 (47%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VG+PNVGKSTL+N LLG + TR + N I DT G+ KP Sbjct: 10 VAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGNRQIVFVDTPGLHKPM 69 Query: 266 RITESLEQKTVKKSMQSV 283 + V +++ V Sbjct: 70 DALGEFMDQEVYEALSDV 87 >gi|293376339|ref|ZP_06622576.1| GTP-binding protein Era [Turicibacter sanguinis PC909] gi|325843413|ref|ZP_08167971.1| ribosome biogenesis GTPase Era [Turicibacter sp. HGF1] gi|292645028|gb|EFF63101.1| GTP-binding protein Era [Turicibacter sanguinis PC909] gi|325489335|gb|EGC91709.1| ribosome biogenesis GTPase Era [Turicibacter sp. HGF1] Length = 302 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 48/171 (28%), Positives = 82/171 (47%), Gaps = 9/171 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 ++I+G PNVGKST N+++ KK+A++ + P TR+++ G +DT GI K Sbjct: 11 VSIIGRPNVGKSTFLNQVLGKKIAIMSDKPQTTRNKIQGVITDADSQTIFIDTPGIHKPK 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + K M D +NE ++F++++ + D I L+ P+ +V NK+D Sbjct: 71 H-ELGKFMTDLAIGTLNEVDAVMFMVNATEKVGKGDRFIIEHLQNVKQPVFLVINKIDLI 129 Query: 125 IAQRNFYEIYSL----DFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHP 171 + I S +F I+ ISA T E + + K+ P P Sbjct: 130 TKEELLTVIASFREEYNFAGIIPISAM----TGENVETLISVIKEALPEGP 176 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 42/170 (24%), Positives = 80/170 (47%), Gaps = 12/170 (7%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 ++++GRPNVGKST +N++LG + + TR+ + + DT G+ KP Sbjct: 11 VSIIGRPNVGKSTFLNQVLGKKIAIMSDKPQTTRNKIQGVITDADSQTIFIDTPGIHKPK 70 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + ++ ++ + + +++AT K D I++ + N V L +NK D Sbjct: 71 H---ELGKFMTDLAIGTLNEVDAVMFMVNATEKVGKGDRFIIEHLQNVKQPVFLVINKID 127 Query: 326 MVSDK--LNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 +++ + L ++ R + N I IS TGE ++ L+ + E Sbjct: 128 LITKEELLTVIASFREEY--NFAG-----IIPISAMTGENVETLISVIKE 170 >gi|94984585|ref|YP_603949.1| tRNA modification GTPase TrmE [Deinococcus geothermalis DSM 11300] gi|205829146|sp|Q1J154|MNME_DEIGD RecName: Full=tRNA modification GTPase mnmE gi|94554866|gb|ABF44780.1| tRNA modification GTPase trmE [Deinococcus geothermalis DSM 11300] Length = 439 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 32/98 (32%), Positives = 57/98 (58%), Gaps = 3/98 (3%) Query: 201 SKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAG 260 ++ R+A++GRPN GKS+L+N LLGY R + G TRD + + P+ + DTAG Sbjct: 218 TRGARLALIGRPNAGKSSLLNALLGYERSIVTPIPGTTRDYLEAQLSLAGVPVTLVDTAG 277 Query: 261 MRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 +R+ + +E V+++++ + + +VL D + P Sbjct: 278 LRETG---DEVEAAGVRQAVRLAESADLVLVLEDGSQP 312 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 41/118 (34%), Positives = 59/118 (50%), Gaps = 6/118 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A++G PN GKS+L N L+ + ++V PG TRD L Q + GV +VDTAG+ + Sbjct: 223 LALIGRPNAGKSSLLNALLGYERSIVTPIPGTTRDYLEAQLSLAGVPVTLVDTAGLRETG 282 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + A + LA A L+L L D G P DH R+ ++ V K D Sbjct: 283 DEVEAAGVRQAVRLA-ESADLVLVLED---GSQPRDHLPAELPRETR--MLRVRTKAD 334 >gi|290476133|ref|YP_003469033.1| GTPase believed to be involved in coordination of cell cycle, energy metabolism, cell division [Xenorhabdus bovienii SS-2004] gi|289175466|emb|CBJ82269.1| GTPase believed to be involved in coordination of cell cycle, energy metabolism, cell division [Xenorhabdus bovienii SS-2004] Length = 301 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 48/161 (29%), Positives = 83/161 (51%), Gaps = 8/161 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNI-VDTAGIADG 63 +AIVG PNVGKSTL N+L+ +K+++ P TR R+ G GV I VDT G+ Sbjct: 11 VAIVGRPNVGKSTLLNQLLGQKISITSRKPQTTRHRIMGIH-TEGVYQAIYVDTPGLHIE 69 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + +I + MN +I + L++F+++ T D + + LR + P+I+ NK+D Sbjct: 70 EKRAINRLMNRAASSSIGDVELVIFVVEG-THWTADDEMVVNKLRNLHCPVILAINKVDN 128 Query: 124 RIAQRNF-----YEIYSLDFKEIVEISAEHDLGTSELHSVI 159 + + ++F ++V ISAE + + ++ Sbjct: 129 VTDKAILLPHIGFLSKQMNFLDVVPISAEKGMNVDTIAKIV 169 Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 43/130 (33%), Positives = 65/130 (50%), Gaps = 5/130 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMR-KP 264 +A+VGRPNVGKSTL+N+LLG +T + TR + + DT G+ + Sbjct: 11 VAIVGRPNVGKSTLLNQLLGQKISITSRKPQTTRHRIMGIHTEGVYQAIYVDTPGLHIEE 70 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 R L + S+ V E I +++ T + D +V+ + N V+LA+NK Sbjct: 71 KRAINRLMNRAASSSIGDV---ELVIFVVEGT-HWTADDEMVVNKLRNLHCPVILAINKV 126 Query: 325 DMVSDKLNLL 334 D V+DK LL Sbjct: 127 DNVTDKAILL 136 >gi|221640727|ref|YP_002526989.1| tRNA modification GTPase TrmE [Rhodobacter sphaeroides KD131] gi|221161508|gb|ACM02488.1| tRNA modification GTPase trmE [Rhodobacter sphaeroides KD131] Length = 428 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 49/184 (26%), Positives = 82/184 (44%), Gaps = 38/184 (20%) Query: 192 EGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNH 251 +G + I +A+VG PN GKSTL+N L +T +G TRD + + + Sbjct: 201 DGSRIAERIRDGFEVAIVGAPNAGKSTLLNALARREAAITSEIAGTTRDVIEVRMDLDGL 260 Query: 252 PIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVF 311 P+ DTAG+R S + ESL +++++ + + + LLD + P Sbjct: 261 PVTFLDTAGLRDTSDLVESL---GIERAVTRAKAADLRVFLLDDSGPL------------ 305 Query: 312 NTGHAVVLALNKWDMVSDKLNLL--QDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMV 369 H + + + +V K +L Q LR +SGRTGEG+ +L+ Sbjct: 306 ---HGITVQADDL-VVQGKADLRPGQGLR-----------------LSGRTGEGVPELVA 344 Query: 370 SVLE 373 ++ E Sbjct: 345 AIGE 348 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 60/125 (48%), Gaps = 10/125 (8%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + +AIVGAPN GKSTL N L +++ A+ G TRD + + ++G+ +DTAG+ D Sbjct: 213 FEVAIVGAPNAGKSTLLNALARREAAITSEIAGTTRDVIEVRMDLDGLPVTFLDTAGLRD 272 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + + + A A L +FL+D + H IT ++V K D Sbjct: 273 TSDLVESLGIERAVTRA-KAADLRVFLLDDSGPL----HGITV-----QADDLVVQGKAD 322 Query: 123 TRIAQ 127 R Q Sbjct: 323 LRPGQ 327 >gi|319941433|ref|ZP_08015761.1| small GTP-binding protein domain:GTP-binding:GTP-binding protein Era [Sutterella wadsworthensis 3_1_45B] gi|319805053|gb|EFW01883.1| small GTP-binding protein domain:GTP-binding:GTP-binding protein Era [Sutterella wadsworthensis 3_1_45B] Length = 360 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 77/169 (45%), Gaps = 6/169 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTL N +V +K+++ P TR+R+ G + F VDT G Sbjct: 69 VAVVGRPNVGKSTLINAIVGEKVSITSKKPQTTRNRVLGVLTTDQAQFIFVDTPGFQTKV 128 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + ++MN ++E ++ +I+S G P D + L + +I+ +K D Sbjct: 129 KNQLTRRMNRSVRSTLSEVDAVVMVIESN-GWKPGDLEVLRLLPTEASNVILAVSKTDLS 187 Query: 125 IAQRNFYEIYS-----LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYP 168 + + + F IV +SAE +L I K+ + P Sbjct: 188 KDRNALLPLMADSMRRYPFAAIVPVSAEKHRQLDDLLREIEKLLPESIP 236 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 85/172 (49%), Gaps = 10/172 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +AVVGRPNVGKSTLIN ++G +T + TR+ V DT G + + Sbjct: 69 VAVVGRPNVGKSTLINAIVGEKVSITSKKPQTTRNRVLGVLTTDQAQFIFVDTPGFQ--T 126 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 ++ L ++ + +S++S + +V++ + ++ DL ++ + V+LA++K D Sbjct: 127 KVKNQLTRR-MNRSVRSTLSEVDAVVMVIESNGWKPGDLEVLRLLPTEASNVILAVSKTD 185 Query: 326 MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKL 377 + D+ N L L +++ P I +S LDDL+ EI KL Sbjct: 186 LSKDR-NALLPLMADSMRRYPFAA---IVPVSAEKHRQLDDLL---REIEKL 230 >gi|322385835|ref|ZP_08059478.1| GTP-binding protein Era [Streptococcus cristatus ATCC 51100] gi|321270120|gb|EFX53037.1| GTP-binding protein Era [Streptococcus cristatus ATCC 51100] Length = 299 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 48/179 (26%), Positives = 88/179 (49%), Gaps = 7/179 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKST N ++ +K+ ++ + TR+++ G + +DT GI K Sbjct: 8 VAILGRPNVGKSTFLNHVMGQKIVIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKM--- 121 ++ M + + E +LF++ + D I L+ +P+I+V NK+ Sbjct: 68 -TALGDFMVEAAYSTLREVDTVLFMVPADEPRGKGDDMIIERLKAAKVPVILVVNKIDKV 126 Query: 122 --DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 D +AQ + + +DFKEIV ISA S L ++ + ++ + P + I ++ Sbjct: 127 HPDQLLAQIDDFR-QQMDFKEIVPISALQGNNVSRLIDILSENLEEGFQYFPEDQITDH 184 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKST +N ++G ++ ++ TR+ + + I DT G+ KP Sbjct: 8 VAILGRPNVGKSTFLNHVMGQKIVIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +L V+ + ++R +T + ++ A P K D I++ + V+L +NK D Sbjct: 68 T---ALGDFMVEAAYSTLREVDTVLFMVPADEPRGKGDDMIIERLKAAKVPVILVVNKID 124 Query: 326 MV 327 V Sbjct: 125 KV 126 >gi|119713399|gb|ABL97461.1| GTP-binding protein Era [uncultured marine bacterium HF130_81H07] Length = 294 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 41/127 (32%), Positives = 71/127 (55%), Gaps = 6/127 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYG--QAIINGVIFNIVDTAGIAD 62 +++ G NVGKSTL N + +KK+A+ P TR+R+ G N ++F +D+ G+ Sbjct: 8 VSLTGRTNVGKSTLLNSIFQKKIAITSRKPQTTRNRILGIFSDEKNQIVF--LDSPGVHS 65 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 G ++ K MN E L++F+ID + ++ + + L++ + PII+V NK+D Sbjct: 66 GHRRALNKYMNKVARTCYEEVDLVIFVIDRGRWLREEENILKN-LKELDKPIILVINKID 124 Query: 123 TRIAQRN 129 R+ RN Sbjct: 125 -RLKNRN 130 Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust. Identities = 44/175 (25%), Positives = 82/175 (46%), Gaps = 21/175 (12%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +++ GR NVGKSTL+N + +T + TR+ + ++ + + I D+ G+ Sbjct: 8 VSLTGRTNVGKSTLLNSIFQKKIAITSRKPQTTRNRILGIFSDEKNQIVFLDSPGVHSGH 67 Query: 266 RITESLEQKTVKKSMQSV-RTCETTIVLLDATIP---FEKQDLRIVDSVFNTGHAVVLAL 321 R + + K M V RTC + L+ I + +++ I+ ++ ++L + Sbjct: 68 R-------RALNKYMNKVARTCYEEVDLVIFVIDRGRWLREEENILKNLKELDKPIILVI 120 Query: 322 NKWDMVSDK---LNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 NK D + ++ L ++ DL +K N I IS + L+DL+ VLE Sbjct: 121 NKIDRLKNRNGILPIMNDLNSKH--NFEAII-----PISALRKDNLEDLLSKVLE 168 >gi|291561652|emb|CBL40451.1| tRNA modification GTPase trmE [butyrate-producing bacterium SS3/4] Length = 471 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 43/161 (26%), Positives = 83/161 (51%), Gaps = 12/161 (7%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 I+G PN GKS+L N LV + A+V + G TRD L + G+ N+VDTAGI D ++ Sbjct: 239 ILGKPNAGKSSLMNVLVGEDRAIVTDVAGTTRDILEEHIYLQGISLNVVDTAGIRDTEDV 298 Query: 67 ----SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 +++ M + +A LI++++D + D+ I F++++ +++ + ++ Sbjct: 299 VEKIGVSRAMEEA-----KKADLIIYVVDGSRELDENDYQIMDFIKERKSVVLLNKSDLE 353 Query: 123 TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 ++ E+ +++ ISA+ + G L I +F Sbjct: 354 PVVSAD---EVEKRSGHKVIGISAKEETGIDLLEEEIKSLF 391 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 35/127 (27%), Positives = 69/127 (54%), Gaps = 5/127 (3%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 +S+ ++ ++G+PN GKS+L+N L+G +R + +G TRD + + + + DTA Sbjct: 231 VSEGVKTVILGKPNAGKSSLMNVLVGEDRAIVTDVAGTTRDILEEHIYLQGISLNVVDTA 290 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R + E + V ++M+ + + I ++D + ++ D +I+D F V+ Sbjct: 291 GIRDTEDVVEKI---GVSRAMEEAKKADLIIYVVDGSRELDENDYQIMD--FIKERKSVV 345 Query: 320 ALNKWDM 326 LNK D+ Sbjct: 346 LLNKSDL 352 >gi|77411686|ref|ZP_00788025.1| GTP-binding protein Era [Streptococcus agalactiae CJB111] gi|77162258|gb|EAO73230.1| GTP-binding protein Era [Streptococcus agalactiae CJB111] Length = 299 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 44/146 (30%), Positives = 73/146 (50%), Gaps = 5/146 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKST N ++ +K+A++ + TR+++ G +DT GI K Sbjct: 8 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTETEQIVFIDTPGIHKPK 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 ++ M + + E +LF++ + D I L+ IP+I+V NK+D Sbjct: 68 -TALGDFMVESAYSTLREVETVLFMVPADEKRGKGDDMIIERLKAAKIPVILVINKIDKV 126 Query: 125 IAQRNFYEI----YSLDFKEIVEISA 146 + +I +DFKE+V ISA Sbjct: 127 HPDQLLEQIDDFRSQMDFKEVVPISA 152 Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 38/137 (27%), Positives = 68/137 (49%), Gaps = 5/137 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKST +N ++G + ++ TR+ + + + I DT G+ KP Sbjct: 8 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTETEQIVFIDTPGIHKPK 67 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +L V+ + ++R ET + ++ A K D I++ + V+L +NK D Sbjct: 68 T---ALGDFMVESAYSTLREVETVLFMVPADEKRGKGDDMIIERLKAAKIPVILVINKID 124 Query: 326 MV--SDKLNLLQDLRTK 340 V L + D R++ Sbjct: 125 KVHPDQLLEQIDDFRSQ 141 >gi|303230675|ref|ZP_07317425.1| tRNA modification GTPase TrmE [Veillonella atypica ACS-049-V-Sch6] gi|302514730|gb|EFL56722.1| tRNA modification GTPase TrmE [Veillonella atypica ACS-049-V-Sch6] Length = 461 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 41/119 (34%), Positives = 66/119 (55%), Gaps = 3/119 (2%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T IVG PN GKS+L N L+++ A+V + PG TRD + + G+ ++DTAGI D Sbjct: 225 TTVIVGRPNAGKSSLMNALLRENRAIVTDIPGTTRDSIEEYMTVEGISLRLIDTAGIRDT 284 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 ++ A + + IN+A ++L +ID +TP + I + + N I++ NK D Sbjct: 285 QDTVEALGVERARDY-INKADIVLCVIDGSTPLTPEEIEILTSVSGLN--TIVLLNKSD 340 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 79/164 (48%), Gaps = 9/164 (5%) Query: 167 YPNHPLEMIENNK-RNEESPKENITSEGKSSVKN---ISKPLRIAVVGRPNVGKSTLINR 222 YP +E + + + R + P E S+ I + +VGRPN GKS+L+N Sbjct: 183 YPEEDIEDVTSQEVREQLEPILKAVDELLSTANTGRLIRDGITTVIVGRPNAGKSSLMNA 242 Query: 223 LLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQS 282 LL NR + G TRDS+ + + + DTAG+R E+L V+++ Sbjct: 243 LLRENRAIVTDIPGTTRDSIEEYMTVEGISLRLIDTAGIRDTQDTVEAL---GVERARDY 299 Query: 283 VRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDM 326 + + + ++D + P +++ I+ SV +G ++ LNK D+ Sbjct: 300 INKADIVLCVIDGSTPLTPEEIEILTSV--SGLNTIVLLNKSDV 341 >gi|300704606|ref|YP_003746209.1| 30S ribosomal subunit-binding GTPase [Ralstonia solanacearum CFBP2957] gi|299072270|emb|CBJ43603.1| 30S ribosomal subunit_binding GTPase [Ralstonia solanacearum CFBP2957] Length = 290 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 46/152 (30%), Positives = 76/152 (50%), Gaps = 10/152 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N LV +K+++ TR R+ G + F VDT G Sbjct: 2 VAIVGRPNVGKSTLMNALVGQKVSITSRKAQTTRHRITGIQTTDDAQFVFVDTPGFQTRH 61 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 ++ + +N + +LF++++ P D + S L ++ P+I++ NK+D Sbjct: 62 ATALNRSLNRAVTSTLTSVDAVLFVVEA-GRYGPDDAKVLSLLPRET-PVILIVNKVDRL 119 Query: 125 IA--QRNFYEIYSLD------FKEIVEISAEH 148 A + ++ D FKEIV +SA++ Sbjct: 120 DAYTRAEMVAVFLQDMAQVFPFKEIVPMSAKN 151 Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust. Identities = 32/120 (26%), Positives = 61/120 (50%), Gaps = 4/120 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VGRPNVGKSTL+N L+G +T ++ TR ++ + DT G + + Sbjct: 2 VAIVGRPNVGKSTLMNALVGQKVSITSRKAQTTRHRITGIQTTDDAQFVFVDTPGFQ--T 59 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 R +L +++ +++ S T ++ + + D +++ S+ V+L +NK D Sbjct: 60 RHATAL-NRSLNRAVTSTLTSVDAVLFVVEAGRYGPDDAKVL-SLLPRETPVILIVNKVD 117 >gi|219847583|ref|YP_002462016.1| tRNA modification GTPase TrmE [Chloroflexus aggregans DSM 9485] gi|219541842|gb|ACL23580.1| tRNA modification GTPase TrmE [Chloroflexus aggregans DSM 9485] Length = 452 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 47/163 (28%), Positives = 80/163 (49%), Gaps = 15/163 (9%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP 264 R+A+VGRPNVGKS+L+N LL R + G TRD++ + N P+ + DTAGMR Sbjct: 216 RVALVGRPNVGKSSLLNALLRVERAIVTPIPGTTRDTLEETANLAGVPVVLIDTAGMRNS 275 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 T+ +EQ V+++ ++ + + +++ DA P +D ++ + + +V W Sbjct: 276 ---TDPVEQIGVERAAAALASADLALLVFDAQQPLTDEDEAMLTTTADKPTIIV-----W 327 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDL 367 + D L P + + S R G G+D+L Sbjct: 328 NKCDDPAIL-----PPTAPEHPH--RVAVAACSARYGHGIDEL 363 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/118 (36%), Positives = 67/118 (56%), Gaps = 3/118 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKS+L N L++ + A+V PG TRD L A + GV ++DTAG+ + Sbjct: 217 VALVGRPNVGKSSLLNALLRVERAIVTPIPGTTRDTLEETANLAGVPVVLIDTAGMRNST 276 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + + + ++ A+ A L L + D++ +T D A+ + K P IIV NK D Sbjct: 277 D-PVEQIGVERAAAALASADLALLVFDAQQPLTDEDEAMLTTTADK--PTIIVWNKCD 331 >gi|113866134|ref|YP_724623.1| tRNA modification GTPase TrmE [Ralstonia eutropha H16] gi|113524910|emb|CAJ91255.1| Predicted GTPase [Ralstonia eutropha H16] Length = 488 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 41/126 (32%), Positives = 70/126 (55%), Gaps = 7/126 (5%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 ++ + G PNVGKS+L N L ++A+V G TRDR+ I+G+ +I+DTAG+ + Sbjct: 235 SVVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDRVRETIQIDGIPLHIIDTAGLREH 294 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDS----KAGITPYDHAITSFLRKK---NIPIII 116 + + ++T AI A ++L L+D+ + G++ D AI L + PI+ Sbjct: 295 AADEVERIGIERTWDAIRRADIVLHLVDATDYLRHGLSETDDAIDDQLSGQLPPGSPIVR 354 Query: 117 VSNKMD 122 + NK+D Sbjct: 355 IVNKID 360 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 30/93 (32%), Positives = 53/93 (56%), Gaps = 2/93 (2%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 L + + G+PNVGKS+L+N L G + +G TRD V + P+ I DTAG+R+ Sbjct: 234 LSVVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDRVRETIQIDGIPLHIIDTAGLRE 293 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDAT 296 + +E+ ++++ ++R + + L+DAT Sbjct: 294 --HAADEVERIGIERTWDAIRRADIVLHLVDAT 324 >gi|118387767|ref|XP_001026986.1| small GTP-binding protein domain containing protein [Tetrahymena thermophila] gi|89308756|gb|EAS06744.1| small GTP-binding protein domain containing protein [Tetrahymena thermophila SB210] Length = 550 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 32/89 (35%), Positives = 57/89 (64%), Gaps = 3/89 (3%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 ++I+++G+PN GKSTL+N L + + G TRD++S+S N PI ++DTAG+R+ Sbjct: 276 MKISIIGKPNAGKSTLLNCLAKKDIAIVSEIPGTTRDALSVSLNISGFPILLYDTAGIRQ 335 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVL 292 + +E+K V K++Q+++ + I L Sbjct: 336 TKDV---IEEKGVNKALQNIQVLKQIIKL 361 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/69 (46%), Positives = 40/69 (57%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 I+I+G PN GKSTL N L KK +A+V PG TRD L I+G + DTAGI K Sbjct: 278 ISIIGKPNAGKSTLLNCLAKKDIAIVSEIPGTTRDALSVSLNISGFPILLYDTAGIRQTK 337 Query: 65 NCSIAKQMN 73 + K +N Sbjct: 338 DVIEEKGVN 346 >gi|326797440|ref|YP_004315260.1| tRNA modification GTPase mnmE [Marinomonas mediterranea MMB-1] gi|326548204|gb|ADZ93424.1| tRNA modification GTPase mnmE [Marinomonas mediterranea MMB-1] Length = 459 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 62/258 (24%), Positives = 114/258 (44%), Gaps = 25/258 (9%) Query: 114 IIIVSNKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLE 173 +I S++ + A R+ +S E+VE + +H I+ +P ++ Sbjct: 137 LIDSSSEQAAKCALRSLQGAFSKRVTELVE---------ALIHLRIYVEAAIDFPEEEID 187 Query: 174 MIENNKRNEESPKENITSEGKSSVKNISKPLR----IAVVGRPNVGKSTLINRLLGYNRL 229 I + K E I N LR + + GRPN GKS+L+N L G + Sbjct: 188 FIGDGKVAAELEGIQIKLNAVLKEANQGALLREGMNVVIAGRPNAGKSSLLNTLSGKDSA 247 Query: 230 LTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETT 289 + + +G TRD + + P+ I DTAG+R + +EQ ++++ + + Sbjct: 248 IVTNIAGTTRDVLREHIHLDGMPLHIIDTAGLRDSP---DEVEQIGIQRAWDEIHKADRI 304 Query: 290 IVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIG 349 ++++D+ K I A + + +K +V +K++L TK L I Sbjct: 305 LLMVDSQTVGSKDPEEIWPEFV----AQLPSRDKLTLVRNKVDL-----TKETTGLESIN 355 Query: 350 DIYINTISGRTGEGLDDL 367 D+ I ++S +TG+G+D L Sbjct: 356 DLPILSLSAKTGQGIDAL 373 Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 33/93 (35%), Positives = 51/93 (54%), Gaps = 9/93 (9%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG- 63 + I G PN GKS+L N L K A+V N G TRD L ++G+ +I+DTAG+ D Sbjct: 224 VVIAGRPNAGKSSLLNTLSGKDSAIVTNIAGTTRDVLREHIHLDGMPLHIIDTAGLRDSP 283 Query: 64 ---KNCSIAKQMNDQTELAINEAHLILFLIDSK 93 + I + ++ I++A IL ++DS+ Sbjct: 284 DEVEQIGIQRAWDE-----IHKADRILLMVDSQ 311 >gi|308190244|ref|YP_003923175.1| thiophene and furan oxidation protein [Mycoplasma fermentans JER] gi|319777612|ref|YP_004137263.1| tRNA modification gtpase mnme [Mycoplasma fermentans M64] gi|307624986|gb|ADN69291.1| thiophene and furan oxidation protein [Mycoplasma fermentans JER] gi|318038687|gb|ADV34886.1| tRNA modification GTPase mnmE [Mycoplasma fermentans M64] Length = 447 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 55/87 (63%), Gaps = 3/87 (3%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 +++A++G+PNVGKS+++N L+ ++ + Q+G TRD V S+ ++ DTAG+RK Sbjct: 219 IKVAILGKPNVGKSSILNCLINEDKAIVTDQAGTTRDLVEASYQIDGLLFKLVDTAGIRK 278 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTI 290 +R +E+ ++KS + + C+ I Sbjct: 279 TNR---KIEKIGIEKSFEQIEKCDVVI 302 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 67/118 (56%), Gaps = 1/118 (0%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKS++ N L+ + A+V + G TRD + I+G++F +VDTAGI Sbjct: 221 VAILGKPNVGKSSILNCLINEDKAIVTDQAGTTRDLVEASYQIDGLLFKLVDTAGIRK-T 279 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 N I K +++ I + +++ + ++ YD + ++ N P+I V NK+D Sbjct: 280 NRKIEKIGIEKSFEQIEKCDVVIHVNEANTLENDYDKKVEKLAKQFNKPLIKVINKVD 337 >gi|225850199|ref|YP_002730433.1| GTP-binding protein Era [Persephonella marina EX-H1] gi|225646733|gb|ACO04919.1| GTP-binding protein Era [Persephonella marina EX-H1] Length = 305 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 44/148 (29%), Positives = 78/148 (52%), Gaps = 7/148 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A++G PNVGKST+ N ++ K+++V P TR R+ G +DT GI GK Sbjct: 12 VALIGRPNVGKSTIMNNILGTKLSIVSPKPQTTRMRILGVKHNKDAQIIFLDTPGIQKGK 71 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAIT-SFLRKKNIPIIIVSNKMDT 123 + + K + + ++ EA +++ +I++ G T D + +++ K N P I+V NK+D Sbjct: 72 DL-LTKTVVESAVSSMEEADVLVMIIEADKGWTKEDEQLLHNYIEKLNKPTILVINKIDK 130 Query: 124 RIAQRNFYEIYS-----LDFKEIVEISA 146 +R + +F EI+ +SA Sbjct: 131 MKDKRLLLPLIEESAKKYNFVEIIPVSA 158 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 83/164 (50%), Gaps = 8/164 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKST++N +LG + + TR + + K+ I DT G++K Sbjct: 12 VALIGRPNVGKSTIMNNILGTKLSIVSPKPQTTRMRILGVKHNKDAQIIFLDTPGIQKGK 71 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDS-VFNTGHAVVLALNKW 324 + L + V+ ++ S+ + +++++A + K+D +++ + + +L +NK Sbjct: 72 DL---LTKTVVESAVSSMEEADVLVMIIEADKGWTKEDEQLLHNYIEKLNKPTILVINKI 128 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLM 368 D + DK LL + A K + I +S G+ LDD + Sbjct: 129 DKMKDKRLLLPLIEESAKK----YNFVEIIPVSAIKGQNLDDFV 168 >gi|296315047|ref|ZP_06864988.1| GTP-binding protein Era [Neisseria polysaccharea ATCC 43768] gi|296838255|gb|EFH22193.1| GTP-binding protein Era [Neisseria polysaccharea ATCC 43768] Length = 311 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 49/180 (27%), Positives = 86/180 (47%), Gaps = 9/180 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N L+ +K+++ TR+R+ G + F VDT G Sbjct: 25 VAIVGRPNVGKSTLMNHLIGQKISITSKKAQTTRNRVTGIYTDDTAQFVFVDTPGFQTDH 84 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 ++ ++N A+ ++F++++ T D + L K+ P+I+V NK+D Sbjct: 85 RNALNDRLNQNVTEALGGVDAVVFVVEAMR-FTDADRVVLKQL-PKHTPVILVVNKIDKD 142 Query: 125 IAQ-RNFYEIYSLDFK------EIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 A+ R E + + +SA+H L + L +I + P +P +M+ + Sbjct: 143 KAKDRYALETFVAQVRAEFEFAAAEAVSAKHGLRIANLLELIKPYLPESVPMYPEDMVTD 202 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 4/120 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VGRPNVGKSTL+N L+G +T ++ TR+ V+ + DT G + Sbjct: 25 VAIVGRPNVGKSTLMNHLIGQKISITSKKAQTTRNRVTGIYTDDTAQFVFVDTPGFQTDH 84 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 R +L + + +++ + + +++A + F D R+V V+L +NK D Sbjct: 85 R--NALNDRLNQNVTEALGGVDAVVFVVEA-MRFTDAD-RVVLKQLPKHTPVILVVNKID 140 >gi|241950667|ref|XP_002418056.1| GTPase MSS1, mitochondrial precursor [Candida dubliniensis CD36] gi|223641395|emb|CAX43355.1| GTPase MSS1, mitochondrial precursor [Candida dubliniensis CD36] Length = 536 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 48/174 (27%), Positives = 93/174 (53%), Gaps = 11/174 (6%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 +++A++G PN GKS+++N L + + +G TRD + I + + + DTAG+R Sbjct: 287 IQLALLGPPNAGKSSILNILANKDAAIVSEIAGTTRDILDIPLEIGGYKVVVGDTAGIRS 346 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRI---VDSVFNTGHAVVLA 320 +S+EQ+ +K++ + + IV+LD I EK L + ++++ +++ Sbjct: 347 FEE-ADSIEQEGIKRAKKRSMLADLVIVVLDP-ISVEKDPLELKEHLEALVKENKQILIV 404 Query: 321 LNKWDM-VSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 LNK D+ VS ++ + + NLP+ Y +S TG G+D+L +++E Sbjct: 405 LNKQDLFVSRSEEMIS--KYSQVFNLPK---NYFYVVSCSTGSGIDNLQKALIE 453 Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust. Identities = 48/174 (27%), Positives = 77/174 (44%), Gaps = 20/174 (11%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI---- 60 +A++G PN GKS++ N L K A+V G TRD L I G + DTAGI Sbjct: 289 LALLGPPNAGKSSILNILANKDAAIVSEIAGTTRDILDIPLEIGGYKVVVGDTAGIRSFE 348 Query: 61 -ADGKNCSIAKQMNDQTELAINEAHLILFLID----SKAGITPYDHAITSFLRKKNIPII 115 AD K+ ++ L A L++ ++D K + +H L K+N I+ Sbjct: 349 EADSIEQEGIKRAKKRSML----ADLVIVVLDPISVEKDPLELKEH--LEALVKENKQIL 402 Query: 116 IVSNKMDTRIAQRN-----FYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFK 164 IV NK D +++ + ++++L +S G L + + FK Sbjct: 403 IVLNKQDLFVSRSEEMISKYSQVFNLPKNYFYVVSCSTGSGIDNLQKALIEKFK 456 >gi|254488767|ref|ZP_05101972.1| tRNA modification GTPase TrmE [Roseobacter sp. GAI101] gi|214045636|gb|EEB86274.1| tRNA modification GTPase TrmE [Roseobacter sp. GAI101] Length = 428 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 49/205 (23%), Positives = 90/205 (43%), Gaps = 37/205 (18%) Query: 193 GKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHP 252 G + + I +A++GRPN GKSTL+N L G + +T + +G TRD + + + P Sbjct: 203 GTHTAERIRTGFEVAIIGRPNAGKSTLLNALAGRDAAITSAVAGTTRDVIEVRMDLGGLP 262 Query: 253 IEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFN 312 + + DTAG+R + + +E ++++++ + I L++ + +DL + Sbjct: 263 VTLLDTAGLRDGA---DEVEAIGIERALKRAADADLRIFLVE-----DDEDLPVA----- 309 Query: 313 TGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVL 372 L +D+R + +L D ISG TG+G+ L+ +V Sbjct: 310 -------------------ALPEDIRMRPKADLR---DSAEGAISGTTGQGVSQLISTVQ 347 Query: 373 EINKLWKTRITTSYLNSWLQKTQLQ 397 I L +T + LQ Sbjct: 348 AI--LGARSLTAGLATHERHRVALQ 370 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 37/63 (58%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + +AI+G PN GKSTL N L + A+ G TRD + + + G+ ++DTAG+ D Sbjct: 214 FEVAIIGRPNAGKSTLLNALAGRDAAITSAVAGTTRDVIEVRMDLGGLPVTLLDTAGLRD 273 Query: 63 GKN 65 G + Sbjct: 274 GAD 276 >gi|126696804|ref|YP_001091690.1| GTP-binding protein Era [Prochlorococcus marinus str. MIT 9301] gi|126543847|gb|ABO18089.1| GTP-binding protein ERA-like protein [Prochlorococcus marinus str. MIT 9301] Length = 303 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 48/164 (29%), Positives = 84/164 (51%), Gaps = 9/164 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP- 264 + ++GRPNVGKSTLIN+L+G +T + TR+ + N I DT G+ KP Sbjct: 9 VTLLGRPNVGKSTLINKLIGEKITITSPIAQTTRNKLKGILTTDNGQIIFVDTPGVHKPH 68 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 R+ E L VK + ++ + I ++D++ + D I++ + + ++ALNKW Sbjct: 69 HRLGEIL----VKNAKSAINGVDMVIFVIDSSEEPGRGDEYILNFLISNKTEFIVALNKW 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLM 368 D+V+ + ++LR + I + +S GEG +L+ Sbjct: 125 DLVNKE---FRNLRLDQYRRFFGINRNF-QIVSASQGEGCSELV 164 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 46/160 (28%), Positives = 73/160 (45%), Gaps = 14/160 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + ++G PNVGKSTL N+L+ +K+ + TR++L G + VDT G+ Sbjct: 9 VTLLGRPNVGKSTLINKLIGEKITITSPIAQTTRNKLKGILTTDNGQIIFVDTPGVHKPH 68 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD-- 122 + + + + + AIN +++F+IDS D I +FL I+ NK D Sbjct: 69 H-RLGEILVKNAKSAINGVDMVIFVIDSSEEPGRGDEYILNFLISNKTEFIVALNKWDLV 127 Query: 123 ------TRIAQ-RNFYEIYSLDFKEIVEISAEHDLGTSEL 155 R+ Q R F+ I + +SA G SEL Sbjct: 128 NKEFRNLRLDQYRRFFGIN----RNFQIVSASQGEGCSEL 163 >gi|294792403|ref|ZP_06757550.1| tRNA modification GTPase TrmE [Veillonella sp. 6_1_27] gi|294456302|gb|EFG24665.1| tRNA modification GTPase TrmE [Veillonella sp. 6_1_27] Length = 461 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 45/152 (29%), Positives = 79/152 (51%), Gaps = 3/152 (1%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T IVG PN GKS+L N L+++ A+V + PG TRD + + G+ ++DTAGI D Sbjct: 225 TTVIVGRPNAGKSSLMNALLRENRAIVTDIPGTTRDSIEEYMTVEGISLRLIDTAGIRDT 284 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 ++ A + ++ IN+A ++L +ID + P + I + + N +++ + + Sbjct: 285 QDTVEALGV-ERARDYINKADIVLCVIDGSTPLNPEEIEILTSVSGLNTIVLLNKSDVAQ 343 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 + N E + F I ISA+ G++ L Sbjct: 344 VVTDENIKEHGT--FTAIERISAKEGEGSAVL 373 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 54/203 (26%), Positives = 98/203 (48%), Gaps = 22/203 (10%) Query: 167 YPNHPLEMIENNK-RNEESP----KENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLIN 221 YP +E + + + R++ P +++ S + + I + +VGRPN GKS+L+N Sbjct: 183 YPEEDIEDVTSQEVRDQLQPILKAMDDLLSTANTG-RLIRDGITTVIVGRPNAGKSSLMN 241 Query: 222 RLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQ 281 LL NR + G TRDS+ + + + DTAG+R E+L V+++ Sbjct: 242 ALLRENRAIVTDIPGTTRDSIEEYMTVEGISLRLIDTAGIRDTQDTVEAL---GVERARD 298 Query: 282 SVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKA 341 + + + ++D + P +++ I+ SV +G ++ LNK SD ++ D Sbjct: 299 YINKADIVLCVIDGSTPLNPEEIEILTSV--SGLNTIVLLNK----SDVAQVVTD----- 347 Query: 342 IKNLPQIGDI-YINTISGRTGEG 363 +N+ + G I IS + GEG Sbjct: 348 -ENIKEHGTFTAIERISAKEGEG 369 >gi|90194110|gb|ABD92616.1| ThdF [Actinobacillus pleuropneumoniae serovar 1] Length = 436 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 50/162 (30%), Positives = 78/162 (48%), Gaps = 23/162 (14%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + I G PN GKS+L N L ++ A+V N G TRD L I+G+ +I+DTAG+ Sbjct: 208 VVIAGRPNAGKSSLLNALAGREAAIVTNIAGTTRDVLREHIHIDGMPLHIIDTAGL---- 263 Query: 65 NCSIAKQMNDQTEL--------AINEAHLILFLIDS-KAGITPYDHAITSFLRK--KNIP 113 ++ ND+ E I +A +L +IDS + + FL K +NIP Sbjct: 264 -----REANDEVEKIGIQRAWDEIEQADHVLLMIDSTEQTAEAFKTEWADFLAKLPQNIP 318 Query: 114 IIIVSNKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 + ++ NK+D E LD ++ +SA+ +G L Sbjct: 319 VTVIRNKVDLSGEAEGLQE---LDGFTLIRLSAQTKVGVDLL 357 Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 25/97 (25%), Positives = 56/97 (57%), Gaps = 3/97 (3%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + +++ + GRPN GKS+L+N L G + + +G TRD + + P+ I DTA Sbjct: 202 LREGMKVVIAGRPNAGKSSLLNALAGREAAIVTNIAGTTRDVLREHIHIDGMPLHIIDTA 261 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDAT 296 G+R+ + + +E+ ++++ + + ++++D+T Sbjct: 262 GLREAN---DEVEKIGIQRAWDEIEQADHVLLMIDST 295 >gi|332308614|ref|YP_004436465.1| tRNA modification GTPase TrmE [Glaciecola agarilytica 4H-3-7+YE-5] gi|332175943|gb|AEE25197.1| tRNA modification GTPase TrmE [Glaciecola agarilytica 4H-3-7+YE-5] Length = 460 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 49/191 (25%), Positives = 95/191 (49%), Gaps = 24/191 (12%) Query: 114 IIIVSNKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLE 173 +I S++ R A R+ +S +VE+ H I+ +P+ ++ Sbjct: 138 LIDASSEQAARGALRSLQGEFSTQINHLVELLT---------HLRIYVEAAIDFPDEEID 188 Query: 174 MIENNK-RNEESPKENITSEGKSSVKN-------ISKPLRIAVVGRPNVGKSTLINRLLG 225 + + K +N+ S IT++ S+VKN + + +R+ + GRPN GKS+L+N L G Sbjct: 189 FLSDGKVQNDLSA---ITAQ-LSAVKNKAQQGSLLREGMRVVIAGRPNAGKSSLLNALAG 244 Query: 226 YNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRT 285 + + + +G TRD + + P+ I DTAG+R S + +E+ ++++ Q + Sbjct: 245 RDAAIVTAIAGTTRDVLKEHIHIDGMPLHIIDTAGLRDSS---DEVERIGIERAWQEIEQ 301 Query: 286 CETTIVLLDAT 296 + + +LD+T Sbjct: 302 ADRVLFMLDST 312 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 1/88 (1%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + I G PN GKS+L N L + A+V G TRD L I+G+ +I+DTAG+ D Sbjct: 225 VVIAGRPNAGKSSLLNALAGRDAAIVTAIAGTTRDVLKEHIHIDGMPLHIIDTAGLRDSS 284 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDS 92 + + + ++ I +A +LF++DS Sbjct: 285 D-EVERIGIERAWQEIEQADRVLFMLDS 311 >gi|19114056|ref|NP_593144.1| mitochondrial GTPase (predicted) [Schizosaccharomyces pombe 972h-] gi|14194952|sp|Q9UTE7|MSS1_SCHPO RecName: Full=tRNA modification GTPase mss1, mitochondrial; Flags: Precursor gi|6433990|emb|CAB60697.1| mitochondrial GTPase (predicted) [Schizosaccharomyces pombe] Length = 496 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 58/211 (27%), Positives = 99/211 (46%), Gaps = 16/211 (7%) Query: 170 HPLEMIENNKRNEE--SPKENITS--EGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLG 225 H L+ IE K EE K+ I + EG + + K + +A++G N GKS+LIN L Sbjct: 202 HELDDIETIKLFEELNEMKDEIDAHIEGGKCKEVLRKGINVAILGPSNAGKSSLINLLAN 261 Query: 226 YNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRT 285 + QSG TRD++ + + P+ + DTAG+RK + E +E+ ++ + R Sbjct: 262 RRISIVSPQSGTTRDAIEVLVDINGFPVLLSDTAGLRKGEDVQE-IEKIGIE--IAKARA 318 Query: 286 CETTIVLLDATIPF--------EKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQDL 337 E+ + L I + + + L + + +NK D VSD + + + Sbjct: 319 EESQLTLFVFPINYHSFSESLKQSEILETIKDCLRQRKPIHFLINKVDCVSDYTTMFKPI 378 Query: 338 RTKAIKNLPQIGDIYINTISGRTGEGLDDLM 368 + KN I + I+ +S +T EGL D + Sbjct: 379 KAYLQKNF-LIPENRIHAVSCKTKEGLIDFL 408 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 1/86 (1%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G N GKS+L N L +++++V G TRD + ING + DTAG+ G+ Sbjct: 242 VAILGPSNAGKSSLINLLANRRISIVSPQSGTTRDAIEVLVDINGFPVLLSDTAGLRKGE 301 Query: 65 NCSIAKQMNDQTELA-INEAHLILFL 89 + +++ + A E+ L LF+ Sbjct: 302 DVQEIEKIGIEIAKARAEESQLTLFV 327 >gi|67923219|ref|ZP_00516706.1| Small GTP-binding protein domain:GTP-binding:GTP-binding protein Era [Crocosphaera watsonii WH 8501] gi|67854950|gb|EAM50222.1| Small GTP-binding protein domain:GTP-binding:GTP-binding protein Era [Crocosphaera watsonii WH 8501] Length = 314 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 46/129 (35%), Positives = 65/129 (50%), Gaps = 3/129 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + I+G PNVGKSTL N+L+ +K+A+ TR+RL G VDT GI Sbjct: 25 VGIIGRPNVGKSTLMNQLIGQKIAITSPVSQTTRNRLRGILTTEKAQIIFVDTPGIHK-P 83 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + S+ K + + AIN +IL ++DS D I L+ N PII+ NK D + Sbjct: 84 HHSLGKIIVKNAKTAINAVDIILLVVDSSTKSGGGDRYIIDLLKTVNQPIILGLNKSDQQ 143 Query: 125 IAQRNFYEI 133 N+ EI Sbjct: 144 --PENYQEI 150 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 48/170 (28%), Positives = 83/170 (48%), Gaps = 11/170 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 + ++GRPNVGKSTL+N+L+G +T S TR+ + + I DT G+ KP Sbjct: 25 VGIIGRPNVGKSTLMNQLIGQKIAITSPVSQTTRNRLRGILTTEKAQIIFVDTPGIHKPH 84 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 SL + VK + ++ + ++++D++ D I+D + ++L LNK D Sbjct: 85 H---SLGKIIVKNAKTAINAVDIILLVVDSSTKSGGGDRYIIDLLKTVNQPIILGLNKSD 141 Query: 326 MVSDKLNLLQDLRTKAIK--NLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 + + + I+ N P I S TG+GL++L S++E Sbjct: 142 QQPENYQEIDESYASLIQDYNWP------ILKFSALTGDGLENLQNSLIE 185 >gi|17545783|ref|NP_519185.1| GTP-binding protein Era [Ralstonia solanacearum GMI1000] gi|21263578|sp|Q8Y0I0|ERA_RALSO RecName: Full=GTPase Era gi|17428077|emb|CAD14766.1| probable gtp-binding protein era homolog [Ralstonia solanacearum GMI1000] Length = 298 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 77/153 (50%), Gaps = 12/153 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N LV +K+++ TR R+ G + F VDT G Sbjct: 10 VAIVGRPNVGKSTLMNALVGQKVSITSRKAQTTRHRITGIQTTDDAQFVFVDTPGFQTRH 69 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 ++ + +N + +LF++++ P D + S L ++ P+I++ NK+D R Sbjct: 70 ATALNRSLNRAVTSTLTSVDAVLFVVEA-GRYGPDDAKVLSLLPRET-PVILIVNKVD-R 126 Query: 125 IAQRNFYEIYSL---------DFKEIVEISAEH 148 + E+ ++ FKEIV +SA++ Sbjct: 127 LDAYTRAEMVAVFLQEMAQVFPFKEIVPMSAKN 159 Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust. Identities = 32/120 (26%), Positives = 61/120 (50%), Gaps = 4/120 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VGRPNVGKSTL+N L+G +T ++ TR ++ + DT G + + Sbjct: 10 VAIVGRPNVGKSTLMNALVGQKVSITSRKAQTTRHRITGIQTTDDAQFVFVDTPGFQ--T 67 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 R +L +++ +++ S T ++ + + D +++ S+ V+L +NK D Sbjct: 68 RHATAL-NRSLNRAVTSTLTSVDAVLFVVEAGRYGPDDAKVL-SLLPRETPVILIVNKVD 125 >gi|89067424|ref|ZP_01154937.1| tRNA modification GTPase [Oceanicola granulosus HTCC2516] gi|89046993|gb|EAR53047.1| tRNA modification GTPase [Oceanicola granulosus HTCC2516] Length = 422 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 55/223 (24%), Positives = 96/223 (43%), Gaps = 32/223 (14%) Query: 183 ESPKENITSE--GKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 E + ++ SE G + + +A++G PNVGKSTL+N L G +T +G TRD Sbjct: 189 EGVRTDLASEARGVGIAERVRAGFEVAILGAPNVGKSTLLNALAGREAAITSEVAGTTRD 248 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 + + P+ + DTAG+R+ T+ +E+ V++++ E Sbjct: 249 VIEVRMELAGLPVTVLDTAGLREA---TDQVERIGVERALARA----------------E 289 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDMVSDKL--NLLQDLRTKAIKNLPQIG-DIYINTIS 357 + DLR+ H V + ++ +D + DLR + + L G D + + Sbjct: 290 QADLRV--------HLVDGGQSPANVRADDIVVQAKADLRGEGVSGLTGAGVDKLVAELG 341 Query: 358 GRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQNPP 400 R + D V+V E ++L R + Q T L+ P Sbjct: 342 QRLSARVPDGAVAVRERHRLAMERAAEGLASVVRQITLLEEMP 384 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 9/75 (12%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + +AI+GAPNVGKSTL N L ++ A+ G TRD + + + G+ ++DTAG+ Sbjct: 212 FEVAILGAPNVGKSTLLNALAGREAAITSEVAGTTRDVIEVRMELAGLPVTVLDTAGL-- 269 Query: 63 GKNCSIAKQMNDQTE 77 ++ DQ E Sbjct: 270 -------REATDQVE 277 >gi|172056862|ref|YP_001813322.1| GTP-binding protein Era [Exiguobacterium sibiricum 255-15] gi|171989383|gb|ACB60305.1| GTP-binding protein Era [Exiguobacterium sibiricum 255-15] Length = 302 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 55/180 (30%), Positives = 87/180 (48%), Gaps = 9/180 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 ++I+G PNVGKST NR++ +K+A++ + P TR+++ G + V +DT GI K Sbjct: 11 VSIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKIQGVYTTDDVQTIFIDTPGIHKPK 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + M A+ E ILF+I+ D I L+ + PII+V NK+D Sbjct: 71 H-KLGDFMMKVATNALREVDAILFMINVTEPKGKGDEFIIEKLKDLDTPIILVMNKVD-- 127 Query: 125 IAQRN----FYEIY--SLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 + N E Y L+F +V ISA L I KI + +P + I ++ Sbjct: 128 LIHPNDIPPIIESYQNELNFAAVVPISALQGNNVEPLLQEISKILPEGPMYYPADQITDH 187 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 31/122 (25%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 ++++GRPNVGKST +NR++G + + TR+ + + + DT G+ KP Sbjct: 11 VSIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKIQGVYTTDDVQTIFIDTPGIHKPK 70 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L +K + ++R + + +++ T P K D I++ + + ++L +NK D Sbjct: 71 H---KLGDFMMKVATNALREVDAILFMINVTEPKGKGDEFIIEKLKDLDTPIILVMNKVD 127 Query: 326 MV 327 ++ Sbjct: 128 LI 129 >gi|299067032|emb|CBJ38227.1| 30S ribosomal subunit_binding GTPase [Ralstonia solanacearum CMR15] Length = 315 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 77/153 (50%), Gaps = 12/153 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N LV +K+++ TR R+ G + F VDT G Sbjct: 27 VAIVGRPNVGKSTLMNALVGQKVSITSRKAQTTRHRITGIQTTDDAQFVFVDTPGFQTRH 86 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 ++ + +N + +LF++++ P D + S L ++ P+I++ NK+D R Sbjct: 87 ATALNRSLNRAVTSTLTSVDAVLFVVEA-GRYGPDDAKVLSLLPRET-PVILIVNKVD-R 143 Query: 125 IAQRNFYEIYSL---------DFKEIVEISAEH 148 + E+ ++ FKEIV +SA++ Sbjct: 144 LDAYTRAEMVAVFLQEMAQVFPFKEIVPMSAKN 176 Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust. Identities = 32/120 (26%), Positives = 61/120 (50%), Gaps = 4/120 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VGRPNVGKSTL+N L+G +T ++ TR ++ + DT G + + Sbjct: 27 VAIVGRPNVGKSTLMNALVGQKVSITSRKAQTTRHRITGIQTTDDAQFVFVDTPGFQ--T 84 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 R +L +++ +++ S T ++ + + D +++ S+ V+L +NK D Sbjct: 85 RHATAL-NRSLNRAVTSTLTSVDAVLFVVEAGRYGPDDAKVL-SLLPRETPVILIVNKVD 142 >gi|90194106|gb|ABD92614.1| ThdF [Actinobacillus equuli subsp. haemolyticus] Length = 436 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 49/154 (31%), Positives = 77/154 (50%), Gaps = 7/154 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + I G PN GKS+L N L ++ A+V N G TRD L I+G+ +I+DTAG+ + Sbjct: 208 VVIAGRPNAGKSSLLNALAGREAAIVTNIAGTTRDVLREHIHIDGMPLHIIDTAGLREAS 267 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGIT-PYDHAITSFLRK--KNIPIIIVSNKM 121 + + K + I +A +L +IDS I + FL K +NIP+ ++ NK+ Sbjct: 268 D-EVEKIGIQRAWDEIEQADHVLLMIDSTEQIAEAFKTEWADFLAKLPQNIPVTVIRNKV 326 Query: 122 DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 D E LD ++ +SA+ +G L Sbjct: 327 DLSGEAEGLQE---LDGFTLIRLSAQTKVGVDLL 357 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 26/97 (26%), Positives = 56/97 (57%), Gaps = 3/97 (3%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + +++ + GRPN GKS+L+N L G + + +G TRD + + P+ I DTA Sbjct: 202 LREGMKVVIAGRPNAGKSSLLNALAGREAAIVTNIAGTTRDVLREHIHIDGMPLHIIDTA 261 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDAT 296 G+R+ S + +E+ ++++ + + ++++D+T Sbjct: 262 GLREAS---DEVEKIGIQRAWDEIEQADHVLLMIDST 295 >gi|78065719|ref|YP_368488.1| GTP-binding protein Era [Burkholderia sp. 383] gi|77966464|gb|ABB07844.1| GTP-binding protein Era [Burkholderia sp. 383] Length = 299 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 43/149 (28%), Positives = 77/149 (51%), Gaps = 7/149 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N LV +K+++ TR R+ G + F VDT G Sbjct: 14 IAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRITGINTFDDAQFVFVDTPGFQTRH 73 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + ++ + +N + +ILF+I++ P D + + +P ++++NK+D Sbjct: 74 STALNRSLNRAVTSTLTSVDVILFVIEA-GRFGPDDQKVLDLI-PPGMPTLLIANKIDRV 131 Query: 125 IAQRNFY----EIYSL-DFKEIVEISAEH 148 + + + ++ +L +F E+V +SA+ Sbjct: 132 NDKASLFPFMQQMSTLREFTELVPLSAQR 160 Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 39/129 (30%), Positives = 68/129 (52%), Gaps = 4/129 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA+VGRPNVGKSTL+N L+G +T ++ TR ++ + + DT G + + Sbjct: 14 IAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRITGINTFDDAQFVFVDTPGFQ--T 71 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 R + +L +++ +++ S T I+ + F D +++D + G +L NK D Sbjct: 72 RHSTAL-NRSLNRAVTSTLTSVDVILFVIEAGRFGPDDQKVLD-LIPPGMPTLLIANKID 129 Query: 326 MVSDKLNLL 334 V+DK +L Sbjct: 130 RVNDKASLF 138 >gi|157804128|ref|YP_001492677.1| tRNA modification GTPase TrmE [Rickettsia canadensis str. McKiel] gi|166234816|sp|A8EZV9|MNME_RICCK RecName: Full=tRNA modification GTPase mnmE gi|157785391|gb|ABV73892.1| tRNA modification GTPase [Rickettsia canadensis str. McKiel] Length = 445 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 35/113 (30%), Positives = 69/113 (61%), Gaps = 6/113 (5%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 ++ L++A++G PN GKS+L+N L+ + + + +G TRD + + +PI + DTA Sbjct: 212 LNSGLKLAIIGPPNAGKSSLLNFLMQRDIAIVSNIAGTTRDIIEGHLDIGGYPIILQDTA 271 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFN 312 G+R+ S ++ +EQ+ +K+++ S +T + I++ DA EK D I + + + Sbjct: 272 GIREES--SDIIEQEGIKRAINSAKTADIKIIMFDA----EKLDSSINEGIID 318 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/56 (46%), Positives = 36/56 (64%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 +AI+G PN GKS+L N L+++ +A+V N G TRD + G I G + DTAGI Sbjct: 218 LAIIGPPNAGKSSLLNFLMQRDIAIVSNIAGTTRDIIEGHLDIGGYPIILQDTAGI 273 >gi|1228147|gb|AAA92441.1| Era [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 301 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 50/179 (27%), Positives = 87/179 (48%), Gaps = 8/179 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI-ADG 63 IAIVG PNVGKSTL N+L+ +K+++ TR L + VDT G+ + Sbjct: 11 IAIVGRPNVGKSTLLNKLLGRKISITSRKAQTTRHALSVCHTEDPYQAIYVDTPGLHMEE 70 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 K +I + MN +I + L++F+ ++ TP D + + LR P+I+ NK+D Sbjct: 71 KRLAINRLMNKAASSSIGDVELVIFVEGTRW--TPDDEMVLNKLRDGKAPVILAVNKVDN 128 Query: 124 RIAQRNF-----YEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 + + + ++F +IV ISAE + + ++ K + + P + I + Sbjct: 129 VQEKVDLLPHLQFLASQMNFPDIVPISAETGMNVDTIAGIVRKHLPEAIHHFPEDYITD 187 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 81/163 (49%), Gaps = 13/163 (7%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAG--MRK 263 IA+VGRPNVGKSTL+N+LLG +T ++ TR ++S+ + DT G M + Sbjct: 11 IAIVGRPNVGKSTLLNKLLGRKISITSRKAQTTRHALSVCHTEDPYQAIYVDTPGLHMEE 70 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 L K S+ V ++ ++ T + D +++ + + V+LA+NK Sbjct: 71 KRLAINRLMNKAASSSIGDVE----LVIFVEGT-RWTPDDEMVLNKLRDGKAPVILAVNK 125 Query: 324 WDMVSDKLNLLQDLRTKAIK-NLPQIGDIYINTISGRTGEGLD 365 D V +K++LL L+ A + N P I IS TG +D Sbjct: 126 VDNVQEKVDLLPHLQFLASQMNFPD-----IVPISAETGMNVD 163 >gi|326692993|ref|ZP_08229998.1| GTPase [Leuconostoc argentinum KCTC 3773] Length = 303 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 50/157 (31%), Positives = 81/157 (51%), Gaps = 7/157 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKSTL NR+V +K+A++ + TR+++ G + +DT G+ + Sbjct: 11 VAIIGRPNVGKSTLLNRIVGEKIAIMSDKAQTTRNKIQGIYTTDNAQVVFIDTPGVHKPQ 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRK-KNIPIIIVSNKMDT 123 N S+ M A++EA I F++D+ D I S L++ K+ PI ++ NK+D Sbjct: 71 N-SLGDFMVKSAFSALHEADAIWFVVDASMPRGRGDDFIISRLKEVKDTPIYLLINKVDL 129 Query: 124 RIAQR--NFYEIYSLD---FKEIVEISAEHDLGTSEL 155 A + + Y D + E+ ISA EL Sbjct: 130 VTADELLDVIQSYQEDAPTWAEVFPISATEGDNVPEL 166 Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 45/171 (26%), Positives = 89/171 (52%), Gaps = 12/171 (7%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKSTL+NR++G + ++ TR+ + + N + DT G+ KP Sbjct: 11 VAIIGRPNVGKSTLLNRIVGEKIAIMSDKAQTTRNKIQGIYTTDNAQVVFIDTPGVHKPQ 70 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHA-VVLALNKW 324 SL VK + ++ + ++DA++P + D I+ + + L +NK Sbjct: 71 N---SLGDFMVKSAFSALHEADAIWFVVDASMPRGRGDDFIISRLKEVKDTPIYLLINKV 127 Query: 325 DMVS--DKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 D+V+ + L+++Q + A P +++ IS G+ + +L+ +++E Sbjct: 128 DLVTADELLDVIQSYQEDA----PTWAEVF--PISATEGDNVPELLGNIVE 172 >gi|205422374|sp|Q0KFG6|MNME_RALEH RecName: Full=tRNA modification GTPase mnmE Length = 475 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 41/126 (32%), Positives = 70/126 (55%), Gaps = 7/126 (5%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 ++ + G PNVGKS+L N L ++A+V G TRDR+ I+G+ +I+DTAG+ + Sbjct: 222 SVVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDRVRETIQIDGIPLHIIDTAGLREH 281 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDS----KAGITPYDHAITSFLRKK---NIPIII 116 + + ++T AI A ++L L+D+ + G++ D AI L + PI+ Sbjct: 282 AADEVERIGIERTWDAIRRADIVLHLVDATDYLRHGLSETDDAIDDQLSGQLPPGSPIVR 341 Query: 117 VSNKMD 122 + NK+D Sbjct: 342 IVNKID 347 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 30/97 (30%), Positives = 56/97 (57%), Gaps = 2/97 (2%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + L + + G+PNVGKS+L+N L G + +G TRD V + P+ I DTA Sbjct: 217 LREGLSVVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDRVRETIQIDGIPLHIIDTA 276 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDAT 296 G+R+ + + +E+ ++++ ++R + + L+DAT Sbjct: 277 GLREHA--ADEVERIGIERTWDAIRRADIVLHLVDAT 311 >gi|194366746|ref|YP_002029356.1| GTP-binding protein Era [Stenotrophomonas maltophilia R551-3] gi|226741238|sp|B4SRK9|ERA_STRM5 RecName: Full=GTPase Era gi|194349550|gb|ACF52673.1| GTP-binding protein Era [Stenotrophomonas maltophilia R551-3] Length = 298 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 50/171 (29%), Positives = 82/171 (47%), Gaps = 8/171 (4%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 ++A++G PNVGKSTL N LV K+++V N P TR RL G A +VDT G+ Sbjct: 11 SVAVIGRPNVGKSTLTNALVGAKVSIVSNRPQTTRHRLLGIATYPEGQLVLVDTPGLHKV 70 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + ++ + MN ++ L +I++ D + LR IP+++V NK+D Sbjct: 71 QKRAMNRVMNRAARGSLEGVDAGLLVIEA-GRWDEEDSLAFNVLRDAGIPVVLVVNKID- 128 Query: 124 RIAQRN-----FYEIYS-LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYP 168 R+ + E+ + DF + ISA+ G L + + + P Sbjct: 129 RLKDKGALLPFLQEVTAGRDFSSVHPISAQKRNGLEALVRDVLALLPEAPP 179 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 86/171 (50%), Gaps = 11/171 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK-P 264 +AV+GRPNVGKSTL N L+G + ++ TR + + + + DT G+ K Sbjct: 12 VAVIGRPNVGKSTLTNALVGAKVSIVSNRPQTTRHRLLGIATYPEGQLVLVDTPGLHKVQ 71 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 R + + + S++ V + +++++A ++++D + + + G VVL +NK Sbjct: 72 KRAMNRVMNRAARGSLEGV---DAGLLVIEAG-RWDEEDSLAFNVLRDAGIPVVLVVNKI 127 Query: 325 DMVSDKLNLLQDLR-TKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEI 374 D + DK LL L+ A ++ ++ IS + GL+ L+ VL + Sbjct: 128 DRLKDKGALLPFLQEVTAGRDFSS-----VHPISAQKRNGLEALVRDVLAL 173 >gi|198453278|ref|XP_002137635.1| GA27334 [Drosophila pseudoobscura pseudoobscura] gi|198132291|gb|EDY68193.1| GA27334 [Drosophila pseudoobscura pseudoobscura] Length = 493 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 60/224 (26%), Positives = 106/224 (47%), Gaps = 21/224 (9%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 +R ++G PNVGKS+L+N L + + Q+G TRD + N+ +P+ DTAG+R+ Sbjct: 240 VRTVIIGAPNVGKSSLLNLLCQRSVSIVTEQAGTTRDIIETMHNFGGYPVIFSDTAGLRR 299 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 + +S+E++ + ++ + + + ++L DA +R +DS V LN+ Sbjct: 300 NT--ADSIEREGMARAKKCLAESDLILLLTDAMA------VRELDSNETVAGYVESYLNE 351 Query: 324 WDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRIT 383 D+ SD L + R + + N +T+S LD L S+L I+ K Sbjct: 352 LDIASD---LCSEKRVQLVAN-------KTDTLSLEECHRLDKLS-SILSIS-CHKPANM 399 Query: 384 TSYLNSWLQKTQ-LQNPPPTIFNRYNRLKYITQIQSSPPSFLIF 426 ++LN+ Q+ Q L P R +Y Q++ + IF Sbjct: 400 ATFLNALEQQLQELCGTPRAEHPRITNTRYRQQLERCIENIDIF 443 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 49/159 (30%), Positives = 77/159 (48%), Gaps = 28/159 (17%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIING--VIFNIVDTAGIADGK 64 I+GAPNVGKS+L N L ++ +++V G TRD + G VIF+ DTAG+ Sbjct: 244 IIGAPNVGKSSLLNLLCQRSVSIVTEQAGTTRDIIETMHNFGGYPVIFS--DTAGLRRNT 301 Query: 65 NCSIAKQMNDQTELAINEAHLILFL--------IDSKAGITPYDHAITSFLRKKNIP--- 113 SI ++ + + + E+ LIL L +DS + Y + S+L + +I Sbjct: 302 ADSIEREGMARAKKCLAESDLILLLTDAMAVRELDSNETVAGY---VESYLNELDIASDL 358 Query: 114 -----IIIVSNKMDTRIAQRNFYEIYSLD-FKEIVEISA 146 + +V+NK DT + E + LD I+ IS Sbjct: 359 CSEKRVQLVANKTDT----LSLEECHRLDKLSSILSISC 393 >gi|167568262|ref|ZP_02361136.1| tRNA modification GTPase TrmE [Burkholderia oklahomensis C6786] Length = 467 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 49/188 (26%), Positives = 89/188 (47%), Gaps = 11/188 (5%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + L + + G+PNVGKS+L+N L G + +G TRD V+ + + P+ I DTA Sbjct: 223 LREGLSVVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTA 282 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R+ + +E+ + ++ + + + LLDA D I + F G VV Sbjct: 283 GLRETE---DEVEKIGIARTWGEIERADVVLHLLDARSRLGADDQAIA-ARFPAGVPVVR 338 Query: 320 ALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWK 379 LNK D+ ++ + + + ++ +S + G+G+D L +L I W+ Sbjct: 339 VLNKTDLTDVPASVARGGGGEGGAEVCEV------RLSAKRGDGIDLLRGELLRIAG-WQ 391 Query: 380 TRITTSYL 387 + YL Sbjct: 392 AGAESVYL 399 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 67/119 (56%), Gaps = 2/119 (1%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 ++ + G PNVGKS+L N L ++A+V G TRD++ + G+ +I+DTAG+ + Sbjct: 228 SVVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRET 287 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 ++ + K +T I A ++L L+D+++ + D AI + +P++ V NK D Sbjct: 288 ED-EVEKIGIARTWGEIERADVVLHLLDARSRLGADDQAIAARF-PAGVPVVRVLNKTD 344 >gi|145639698|ref|ZP_01795301.1| GTP-binding protein Era [Haemophilus influenzae PittII] gi|145271255|gb|EDK11169.1| GTP-binding protein Era [Haemophilus influenzae PittII] gi|309750668|gb|ADO80652.1| GTP-binding protein [Haemophilus influenzae R2866] Length = 302 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 48/176 (27%), Positives = 83/176 (47%), Gaps = 6/176 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N+++ +K+++ TR R+ G VDT G+ + Sbjct: 13 IAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIKTEGAYQEIYVDTPGLHIEE 72 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 +I + MN AI + LI+F++D + A+ LR P+++ NK+D Sbjct: 73 KRAINRLMNRAASSAIGDVDLIIFVVDGTHWNADDEMALNK-LRNAKAPVVLAINKVDNI 131 Query: 125 IAQRNFYEIYS-----LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 + + + +F IV ISA+ EL ++ + ++ + P + + Sbjct: 132 KNKDDLLPFITGLSSKFNFAHIVPISAQRGNNVHELEKIVRQSLREGVHHFPEDYV 187 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 42/131 (32%), Positives = 69/131 (52%), Gaps = 7/131 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIF-DTAGMR-K 263 IA+VGRPNVGKSTL+N++LG +T ++ TR + + + EI+ DT G+ + Sbjct: 13 IAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRI-VGIKTEGAYQEIYVDTPGLHIE 71 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 R L + ++ V + I ++D T + D ++ + N VVLA+NK Sbjct: 72 EKRAINRLMNRAASSAIGDV---DLIIFVVDGT-HWNADDEMALNKLRNAKAPVVLAINK 127 Query: 324 WDMVSDKLNLL 334 D + +K +LL Sbjct: 128 VDNIKNKDDLL 138 >gi|325127805|gb|EGC50713.1| GTP-binding protein Era [Neisseria meningitidis N1568] Length = 307 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 49/180 (27%), Positives = 86/180 (47%), Gaps = 9/180 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N L+ +K+++ TR+R+ G + F VDT G Sbjct: 21 VAIVGRPNVGKSTLMNHLIGQKISITSKKAQTTRNRVTGIYTDDTAQFVFVDTPGFQTDH 80 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 ++ ++N A+ ++F++++ T D + L K+ P+I+V NK+D Sbjct: 81 RNALNDRLNQNVTEALGGVDAVVFVVEAMR-FTDADRVVLKQL-PKHTPVILVVNKIDKD 138 Query: 125 IAQ-RNFYEIYSLDFK------EIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 A+ R E + + +SA+H L + L +I + P +P +M+ + Sbjct: 139 KAKDRYALETFVAQVRAEFEFAAAEAVSAKHGLRIANLLELIKPYLPESVPMYPEDMVTD 198 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 4/120 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VGRPNVGKSTL+N L+G +T ++ TR+ V+ + DT G + Sbjct: 21 VAIVGRPNVGKSTLMNHLIGQKISITSKKAQTTRNRVTGIYTDDTAQFVFVDTPGFQTDH 80 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 R +L + + +++ + + +++A + F D R+V V+L +NK D Sbjct: 81 R--NALNDRLNQNVTEALGGVDAVVFVVEA-MRFTDAD-RVVLKQLPKHTPVILVVNKID 136 >gi|325291447|ref|YP_004267628.1| tRNA modification GTPase trmE [Syntrophobotulus glycolicus DSM 8271] gi|324966848|gb|ADY57627.1| tRNA modification GTPase trmE [Syntrophobotulus glycolicus DSM 8271] Length = 466 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 44/128 (34%), Positives = 67/128 (52%), Gaps = 21/128 (16%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 I G PNVGKS+L N L++++ A+V + PG TRD + I GV+ +++DTAGI Sbjct: 225 IAGIPNVGKSSLLNALLREERAIVTDIPGTTRDEIREYVKIGGVLLHLIDTAGI------ 278 Query: 67 SIAKQMNDQTEL--------AINEAHLILFLIDSKAGITPYDHAITS----FLRKKNIPI 114 ++ ND E+ AI+EA ++L L+D D +T L+ Sbjct: 279 ---RKSNDPVEMIGINRSWKAIDEADVVLLLLDVTDKENHSDGCLTEDELRILKDYAEKT 335 Query: 115 IIVSNKMD 122 II+ NK+D Sbjct: 336 IILYNKID 343 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 32/104 (30%), Positives = 53/104 (50%), Gaps = 3/104 (2%) Query: 193 GKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHP 252 G + K I + L + G PNVGKS+L+N LL R + G TRD + Sbjct: 210 GSKTGKIIREGLSTVIAGIPNVGKSSLLNALLREERAIVTDIPGTTRDEIREYVKIGGVL 269 Query: 253 IEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDAT 296 + + DTAG+RK + + +E + +S +++ + ++LLD T Sbjct: 270 LHLIDTAGIRKSN---DPVEMIGINRSWKAIDEADVVLLLLDVT 310 >gi|309781188|ref|ZP_07675925.1| GTP-binding protein Era [Ralstonia sp. 5_7_47FAA] gi|308920009|gb|EFP65669.1| GTP-binding protein Era [Ralstonia sp. 5_7_47FAA] Length = 312 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 49/185 (26%), Positives = 87/185 (47%), Gaps = 11/185 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N LV +K+++ TR R+ G + F VDT G Sbjct: 24 VAIVGRPNVGKSTLMNALVGQKVSITSRKAQTTRHRITGIQTTDDAQFVFVDTPGFQTRH 83 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 ++ + +N + +LF++++ P D + S L ++ P+I++ NK+D Sbjct: 84 ATALNRSLNRAVTSTLTSVDAVLFVVEA-GRYGPDDEKVLSLLPRET-PVILIVNKVDRL 141 Query: 125 IA--QRNFYEIYSLD------FKEIVEISAEHDLGTSELHSVIFKIFKQKYPNH-PLEMI 175 A + ++ D F EIV +SA++ L ++ + P + P + Sbjct: 142 DAYTRAEMVAVFLQDMAQVFPFAEIVPMSAKNRDDIDRLLGIVRPYLPEGEPMYDPEALT 201 Query: 176 ENNKR 180 + ++R Sbjct: 202 DRSER 206 Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust. Identities = 32/120 (26%), Positives = 61/120 (50%), Gaps = 4/120 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VGRPNVGKSTL+N L+G +T ++ TR ++ + DT G + + Sbjct: 24 VAIVGRPNVGKSTLMNALVGQKVSITSRKAQTTRHRITGIQTTDDAQFVFVDTPGFQ--T 81 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 R +L +++ +++ S T ++ + + D +++ S+ V+L +NK D Sbjct: 82 RHATAL-NRSLNRAVTSTLTSVDAVLFVVEAGRYGPDDEKVL-SLLPRETPVILIVNKVD 139 >gi|124008575|ref|ZP_01693267.1| GTP-binding protein Era [Microscilla marina ATCC 23134] gi|123985949|gb|EAY25806.1| GTP-binding protein Era [Microscilla marina ATCC 23134] Length = 302 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 53/173 (30%), Positives = 90/173 (52%), Gaps = 15/173 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIV--DTAGIAD 62 ++I+G PNVGKSTL N+++ +K++++ + TR R+ G +ING F IV DT GI Sbjct: 19 VSIIGKPNVGKSTLMNQVIGEKLSIITSKAQTTRHRIMG--VINGDDFQIVYSDTPGIIK 76 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 K + K M ++++A +ILF+ D D + L+ P+I++ NK+D Sbjct: 77 PK-YELHKSMMRFVNTSLDDADVILFVTDIFEKHDEND--VIEKLKISEAPVILLVNKID 133 Query: 123 ----TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHP 171 ++ ++ Y + EI+ ISA +++ +L I K P HP Sbjct: 134 LAKDNQVEEKITYWKELIQPSEIIPISALNNINIDKLFESILKAL----PKHP 182 Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 40/126 (31%), Positives = 62/126 (49%), Gaps = 9/126 (7%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 ++++G+PNVGKSTL+N+++G + S++ TR + N + I DT G+ KP Sbjct: 19 VSIIGKPNVGKSTLMNQVIGEKLSIITSKAQTTRHRIMGVINGDDFQIVYSDTPGIIKPK 78 Query: 266 RITESLEQKTVKKSMQSVRTC-ETTIVLLDATIPFEKQDLRIVDSVFNTGHA-VVLALNK 323 + K M+ V T + V+L T FEK D V A V+L +NK Sbjct: 79 Y-------ELHKSMMRFVNTSLDDADVILFVTDIFEKHDENDVIEKLKISEAPVILLVNK 131 Query: 324 WDMVSD 329 D+ D Sbjct: 132 IDLAKD 137 >gi|22328152|ref|NP_201448.2| GTP binding / RNA binding [Arabidopsis thaliana] gi|17473914|gb|AAL38371.1| GTP-binding protein-like [Arabidopsis thaliana] gi|20259794|gb|AAM13244.1| GTP-binding protein-like [Arabidopsis thaliana] gi|332010835|gb|AED98218.1| GTP-binding protein Era [Arabidopsis thaliana] Length = 427 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 48/181 (26%), Positives = 90/181 (49%), Gaps = 8/181 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTL N+++ +K+++V + P TR R+ G + DT G+ + K Sbjct: 132 VAVVGMPNVGKSTLSNQMIGQKISIVTDKPQTTRHRILGICSSPEYQMILYDTPGVIEKK 191 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLR--KKNIPIIIVSNKMD 122 + M A A ++ L+D+ T + + L +K P+++V NK D Sbjct: 192 MHRLDTMMMKNVRDAAINADCVVILVDACKTPTNIEEVLKEGLGDLEKKPPMLLVMNKKD 251 Query: 123 T----RIAQR-NFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 IA++ +YE ++ D E++ +SA++ G ++ I P +P +++ Sbjct: 252 LIKPGEIAKKLEWYEKFT-DVDEVIPVSAKYGHGIEDVKEWILSKLPFGPPYYPKDIVSE 310 Query: 178 N 178 + Sbjct: 311 H 311 Score = 38.1 bits (87), Expect = 3.4, Method: Compositional matrix adjust. Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 2/90 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +AVVG PNVGKSTL N+++G + + TR + + + + ++DT G+ + Sbjct: 132 VAVVGMPNVGKSTLSNQMIGQKISIVTDKPQTTRHRILGICSSPEYQMILYDTPGVIE-- 189 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDA 295 + L+ +K + + ++L+DA Sbjct: 190 KKMHRLDTMMMKNVRDAAINADCVVILVDA 219 >gi|206579346|ref|YP_002237091.1| GTP-binding protein Era [Klebsiella pneumoniae 342] gi|288934053|ref|YP_003438112.1| GTP-binding protein Era [Klebsiella variicola At-22] gi|290508249|ref|ZP_06547620.1| GTP-binding protein Era [Klebsiella sp. 1_1_55] gi|226741220|sp|B5XNH1|ERA_KLEP3 RecName: Full=GTPase Era gi|206568404|gb|ACI10180.1| GTP-binding protein Era [Klebsiella pneumoniae 342] gi|288888782|gb|ADC57100.1| GTP-binding protein Era [Klebsiella variicola At-22] gi|289777643|gb|EFD85640.1| GTP-binding protein Era [Klebsiella sp. 1_1_55] Length = 301 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 51/185 (27%), Positives = 88/185 (47%), Gaps = 20/185 (10%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYG-------QAIINGVIFNIVDT 57 +AIVG PNVGKSTL N+L+ +K+++ TR R+ G QAI VDT Sbjct: 11 VAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGPYQAI-------YVDT 63 Query: 58 AGIADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIV 117 G+ + +I + MN +I + L++F+++ T D + + LR P+I+ Sbjct: 64 PGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRW-TQDDEMVLNKLRDAKAPVILA 122 Query: 118 SNKMDTRIAQRNF-----YEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPL 172 NK+D + + ++F +IV ISAE + +++ K + + P Sbjct: 123 VNKVDNVQDKAELLPHLQFLASQMNFLDIVPISAETGTNVDTIAAIVRKHLPEAIHHFPE 182 Query: 173 EMIEN 177 + I + Sbjct: 183 DYITD 187 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 52/167 (31%), Positives = 84/167 (50%), Gaps = 9/167 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDS-VSISWNWKNHPIEIFDTAGMRKP 264 +A+VGRPNVGKSTL+N+LLG +T ++ TR V I I + DT G+ Sbjct: 11 VAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGPYQAIYV-DTPGLHME 69 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 + ++ + K + S+ E I +++ T + + D +++ + + V+LA+NK Sbjct: 70 EK--RAINRLMNKAASSSIGDVELVIFVVEGT-RWTQDDEMVLNKLRDAKAPVILAVNKV 126 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSV 371 D V DK LL L+ A Q+ + I IS TG +D + V Sbjct: 127 DNVQDKAELLPHLQFLA----SQMNFLDIVPISAETGTNVDTIAAIV 169 >gi|332886080|gb|EGK06324.1| tRNA modification GTPase TrmE [Dysgonomonas mossii DSM 22836] Length = 463 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 66/218 (30%), Positives = 114/218 (52%), Gaps = 28/218 (12%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G N GKSTL N L+ ++ A+V + G TRD + I G+ F ++DTAGI D Sbjct: 224 VAIIGETNAGKSTLLNLLLHEEKAIVSDIHGTTRDVIEDTINIQGLTFRLIDTAGIRDTH 283 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPI------IIVS 118 + I ++T I +A+++L++ D + T +H L +K +P+ ++V Sbjct: 284 D-EIESLGIERTFKKIEQANIVLWVADCE---TINEH--IEELSQKILPVVGDRKLVLVF 337 Query: 119 NKMDTRIAQRNFY-EIYSLD-FKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHP----L 172 NK+D A+R E LD E V ISA+++ GT++L ++ K N P Sbjct: 338 NKVDIISAERKAEKEKLLLDKIPERVFISAKYEQGTNQLEDLLVKT-----ANIPEISEQ 392 Query: 173 EMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVG 210 ++I N R+ E+ + +T ++K +S+ L + + G Sbjct: 393 DIIVTNVRHYEALQNALT-----AIKRVSEGLELKISG 425 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 57/215 (26%), Positives = 96/215 (44%), Gaps = 41/215 (19%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++G N GKSTL+N LL + + G TRD + + N + + DTAG+R Sbjct: 224 VAIIGETNAGKSTLLNLLLHEEKAIVSDIHGTTRDVIEDTINIQGLTFRLIDTAGIRDTH 283 Query: 266 RITESLE-QKTVKKSMQS-----VRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 ESL ++T KK Q+ V CET E+ +I+ V + +VL Sbjct: 284 DEIESLGIERTFKKIEQANIVLWVADCETI------NEHIEELSQKILPVVGD--RKLVL 335 Query: 320 ALNKWDMVS------------DKL--------------NLLQDLRTKAIKNLPQIGDIYI 353 NK D++S DK+ N L+DL K N+P+I + I Sbjct: 336 VFNKVDIISAERKAEKEKLLLDKIPERVFISAKYEQGTNQLEDLLVKT-ANIPEISEQDI 394 Query: 354 NTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLN 388 + R E L + + ++ +++ + +I+ +L+ Sbjct: 395 IVTNVRHYEALQNALTAIKRVSEGLELKISGDFLS 429 >gi|113476532|ref|YP_722593.1| GTP-binding protein Era [Trichodesmium erythraeum IMS101] gi|110167580|gb|ABG52120.1| GTP-binding protein Era [Trichodesmium erythraeum IMS101] Length = 310 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 47/179 (26%), Positives = 85/179 (47%), Gaps = 6/179 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + I+G PNVGKSTL N+LV +K+A+ TR+RL G VDT GI + Sbjct: 21 VGIIGRPNVGKSTLMNQLVGQKVAITSPVAQTTRNRLRGILTTQAAQIIFVDTPGIHKPQ 80 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + K + ++AI L+L ++D D I + L K P+I+ NK+D + Sbjct: 81 H-QLGKVLVQNAKVAIQSVDLVLLIVDGSVIAGGGDRYIINLLDKIQTPVILGMNKLDLQ 139 Query: 125 IA-----QRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 + ++Y++ +I++ SA G L ++ + + +P +++ + Sbjct: 140 PQDAWKIEASYYQLIHPHPWQIIKFSAVTGEGVEILQDLLIEQMETGPYYYPPDLVTDQ 198 Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 43/169 (25%), Positives = 84/169 (49%), Gaps = 6/169 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 + ++GRPNVGKSTL+N+L+G +T + TR+ + + I DT G+ KP Sbjct: 21 VGIIGRPNVGKSTLMNQLVGQKVAITSPVAQTTRNRLRGILTTQAAQIIFVDTPGIHKPQ 80 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + V+ + ++++ + ++++D ++ D I++ + V+L +NK D Sbjct: 81 H---QLGKVLVQNAKVAIQSVDLVLLIVDGSVIAGGGDRYIINLLDKIQTPVILGMNKLD 137 Query: 326 MVSDKLNLLQDLRTKAIKNLP-QIGDIYINTISGRTGEGLDDLMVSVLE 373 + ++ + I P QI I + ++G E L DL++ +E Sbjct: 138 LQPQDAWKIEASYYQLIHPHPWQI--IKFSAVTGEGVEILQDLLIEQME 184 >gi|90194140|gb|ABD92631.1| ThdF [Pasteurella canis] Length = 436 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 78/330 (23%), Positives = 152/330 (46%), Gaps = 56/330 (16%) Query: 43 GQAIINGVIFNIVDTAGIADGKNCSIAKQ--MNDQTELAINEAHLILFLIDSKAGITPYD 100 GQ +++ ++ I+ G+ + ++Q +ND+ +LA EA I LID+ + + Sbjct: 75 GQVVLDLLLKRILQIEGVRLARPGEFSEQAFLNDKLDLAQAEA--IADLIDASS-----E 127 Query: 101 HAITSFLRKKNIPIIIVSNKM----DTRIAQRNFYEIYSLDF-KEIVEISAEHDLGTSEL 155 A S L+ SNK+ D+ I R + E ++DF E ++ A+ + + L Sbjct: 128 QAARSALKSLQGEF---SNKVNQLVDSVIYLRTYVE-AAIDFPDEEIDFLADGKI-EAHL 182 Query: 156 HSVIFKIFKQKYPNHPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVG 215 + +I ++ +K E+ + +I EG +++ + GRPN G Sbjct: 183 NEIILQL---------------DKVRSEAKQGSILREG----------MKVVIAGRPNAG 217 Query: 216 KSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKT 275 KS+L+N L G + +G TRD + + P+ I DTAG+R+ T+ +E+ Sbjct: 218 KSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREA---TDEVERIG 274 Query: 276 VKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMVSDKLNLLQ 335 + ++ + + +++LD+T P QDL + F + + M+ +K +L Sbjct: 275 IVRAWSEIEQADRILLMLDSTEP-NNQDLETIRVEFLAKLPATIPIT---MIRNKADL-- 328 Query: 336 DLRTKAIKNLPQIGDIYINTISGRTGEGLD 365 + I+ L + + T+S +T +G+D Sbjct: 329 ---SGEIEGLKEQSGYTVITLSAKTQQGVD 355 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/128 (32%), Positives = 65/128 (50%), Gaps = 18/128 (14%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + I G PN GKS+L N L ++ A+V + G TRD L I+G+ +I+DTAG+ + Sbjct: 208 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREAT 267 Query: 65 N----CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITS----FLRK--KNIPI 114 + I + ++ I +A IL ++DS P + + + FL K IPI Sbjct: 268 DEVERIGIVRAWSE-----IEQADRILLMLDST---EPNNQDLETIRVEFLAKLPATIPI 319 Query: 115 IIVSNKMD 122 ++ NK D Sbjct: 320 TMIRNKAD 327 >gi|6573766|gb|AAF17686.1|AC009243_13 F28K19.23 [Arabidopsis thaliana] Length = 613 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 54/196 (27%), Positives = 96/196 (48%), Gaps = 30/196 (15%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + L+IA+VGRPNVGKS+L+N R + +G TRD V + + PI + D Sbjct: 348 KLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEVAGTTRDVVEANVTVRGVPITLLD 407 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD---LRIVDS----- 309 TAG+R+ + I E + V++S + + + I+ + A + ++D LR + S Sbjct: 408 TAGIRETNDIVEKI---GVERSETAAKVADVIIMAVSAVEGWTEEDTELLRKIQSDKVGV 464 Query: 310 --------VFNTGHAVVLALNKWDMV-SDKLNLLQDLRTKAIKNLPQIGDIYINTI--SG 358 + ++L +NK D + L+D R K +++ ++ S Sbjct: 465 SFYDLFGGLLYLKQPMILVMNKIDCAPPGSCDQLEDQRKKE--------EVFHKSVFTSA 516 Query: 359 RTGEGLDDLMVSVLEI 374 TG+G+++L ++LEI Sbjct: 517 VTGQGIEELEDAILEI 532 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 57/204 (27%), Positives = 88/204 (43%), Gaps = 30/204 (14%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKS+L N K + A+V G TRD + + GV ++DTAGI + Sbjct: 356 IAIVGRPNVGKSSLLNAWSKSERAIVTEVAGTTRDVVEANVTVRGVPITLLDTAGIRE-T 414 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNI------------ 112 N + K +++E A A +I+ + + G T D + ++ + Sbjct: 415 NDIVEKIGVERSETAAKVADVIIMAVSAVEGWTEEDTELLRKIQSDKVGVSFYDLFGGLL 474 Query: 113 ----PIIIVSNKMDTRIA--------QRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 P+I+V NK+D QR E+ F + V SA G EL I Sbjct: 475 YLKQPMILVMNKIDCAPPGSCDQLEDQRKKEEV----FHKSVFTSAVTGQGIEELEDAIL 530 Query: 161 KIFK-QKYPNHPLEMIENNKRNEE 183 +I + P + N ++ E+ Sbjct: 531 EILGLDRVPTGGHQWTVNQRQCEQ 554 >gi|319891293|ref|YP_004148168.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Staphylococcus pseudintermedius HKU10-03] gi|317160989|gb|ADV04532.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Staphylococcus pseudintermedius HKU10-03] Length = 460 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 47/159 (29%), Positives = 84/159 (52%), Gaps = 7/159 (4%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PNVGKS++ N L++ A+V G TRD L + GV +VDTAGI + ++ Sbjct: 227 IVGKPNVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRETEDI 286 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 + + +++ A++EA LILF+++ +T D + ++ ++ +II ++ R+ Sbjct: 287 -VERIGVERSRKALSEADLILFVLNYNEPLTEDDRKLYEVIKNEDAIVIINKTDLEQRL- 344 Query: 127 QRNFYEIYSL--DFKEIVEISAEHDLGTSELHSVIFKIF 163 + E+ ++ D I++ S G EL I +F Sbjct: 345 --DLAEVEAMVGDMP-IIQTSMLQQQGIDELEIQIRDLF 380 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 46/174 (26%), Positives = 93/174 (53%), Gaps = 14/174 (8%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L +VG+PNVGKS+++N L+ N+ + +G TRD + N + P+ + D Sbjct: 217 KIMREGLSTVIVGKPNVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVD 276 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ I E + V++S +++ + + +L+ P + D ++ + + N V Sbjct: 277 TAGIRETEDIVERI---GVERSRKALSEADLILFVLNYNEPLTEDDRKLYEVIKNEDAIV 333 Query: 318 VLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSV 371 + +NK D+ +L+L + +A+ +GD+ I S +G+D+L + + Sbjct: 334 I--INKTDL-EQRLDLAE---VEAM-----VGDMPIIQTSMLQQQGIDELEIQI 376 >gi|332296911|ref|YP_004438833.1| tRNA modification GTPase mnmE [Treponema brennaborense DSM 12168] gi|332180014|gb|AEE15702.1| tRNA modification GTPase mnmE [Treponema brennaborense DSM 12168] Length = 509 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 43/124 (34%), Positives = 71/124 (57%), Gaps = 10/124 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + + G N GKS+LFN L+K++ A+V + G TRD L A G+ + DTAG+ + Sbjct: 230 VVLCGRTNAGKSSLFNMLLKEERAIVSDIHGTTRDWLESWASFGGIPARLFDTAGLRETD 289 Query: 65 NC---SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHA-ITSFLRKKNI--PIIIVS 118 + S ++ D T+ +A LIL+++D+ GIT D + +T+F N+ P+I++ Sbjct: 290 DVVEQSGVRRTFDLTK----DADLILYVVDAVEGITDEDESFLTAFAAAPNVRTPLILIL 345 Query: 119 NKMD 122 NK D Sbjct: 346 NKCD 349 Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 39/129 (30%), Positives = 65/129 (50%), Gaps = 8/129 (6%) Query: 205 RIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISW-NWKNHPIEIFDTAGMRK 263 R+ + GR N GKS+L N LL R + G TRD + SW ++ P +FDTAG+R+ Sbjct: 229 RVVLCGRTNAGKSSLFNMLLKEERAIVSDIHGTTRDWLE-SWASFGGIPARLFDTAGLRE 287 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQD---LRIVDSVFNTGHAVVLA 320 + +EQ V+++ + + + ++DA +D L + N ++L Sbjct: 288 TDDV---VEQSGVRRTFDLTKDADLILYVVDAVEGITDEDESFLTAFAAAPNVRTPLILI 344 Query: 321 LNKWDMVSD 329 LNK D +S+ Sbjct: 345 LNKCDKLSE 353 >gi|291521111|emb|CBK79404.1| tRNA modification GTPase trmE [Coprococcus catus GD/7] Length = 458 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 35/127 (27%), Positives = 70/127 (55%), Gaps = 5/127 (3%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + ++ ++G+PN GKS+L+N LLG NR + +G TRD++ + P+ I DTA Sbjct: 218 VKEGIKTVILGKPNAGKSSLMNVLLGENRAIVTEIAGTTRDTLEEHVSIHGIPLNIIDTA 277 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R+ + E + V+K++ + I ++D++ ++ D I+ + V++ Sbjct: 278 GIRQTEDVVEKI---GVRKAIDFAEEADLIIYVVDSSTEMDQNDDDIIRMI--QSKKVIV 332 Query: 320 ALNKWDM 326 +NK D+ Sbjct: 333 LMNKSDL 339 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 50/158 (31%), Positives = 79/158 (50%), Gaps = 6/158 (3%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 I+G PN GKS+L N L+ + A+V G TRD L I+G+ NI+DTAGI ++ Sbjct: 226 ILGKPNAGKSSLMNVLLGENRAIVTEIAGTTRDTLEEHVSIHGIPLNIIDTAGIRQTEDV 285 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR-I 125 + + A EA LI++++DS + D I ++ K +I++ NK D R + Sbjct: 286 VEKIGVRKAIDFA-EEADLIIYVVDSSTEMDQNDDDIIRMIQSKK--VIVLMNKSDLRPV 342 Query: 126 AQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 R+ +I I+EISA + G + +F Sbjct: 343 VSRS--DIEKQLQAPIIEISAREETGLDIFEDTLKDMF 378 >gi|254804569|ref|YP_003082790.1| GTP-binding protein Era [Neisseria meningitidis alpha14] gi|254668111|emb|CBA04671.1| GTP-binding protein Era [Neisseria meningitidis alpha14] Length = 313 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 49/180 (27%), Positives = 86/180 (47%), Gaps = 9/180 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N L+ +K+++ TR+R+ G + F VDT G Sbjct: 27 VAIVGRPNVGKSTLMNHLIGQKISITSKKAQTTRNRVTGIYTDDTAQFVFVDTPGFQTDH 86 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 ++ ++N A+ ++F++++ T D + L K+ P+I+V NK+D Sbjct: 87 RNALNDRLNQNVTEALGGVDAVVFVVEAMR-FTDADRVVLKQL-PKHTPVILVVNKIDKD 144 Query: 125 IAQ-RNFYEIYSLDFK------EIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 A+ R E + + +SA+H L + L +I + P +P +M+ + Sbjct: 145 KAKDRYALEAFVAQVRAEFEFAAAEAVSAKHGLRIANLLELIKPYLPESVPMYPEDMVTD 204 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 4/120 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VGRPNVGKSTL+N L+G +T ++ TR+ V+ + DT G + Sbjct: 27 VAIVGRPNVGKSTLMNHLIGQKISITSKKAQTTRNRVTGIYTDDTAQFVFVDTPGFQTDH 86 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 R +L + + +++ + + +++A + F D R+V V+L +NK D Sbjct: 87 R--NALNDRLNQNVTEALGGVDAVVFVVEA-MRFTDAD-RVVLKQLPKHTPVILVVNKID 142 >gi|160933320|ref|ZP_02080708.1| hypothetical protein CLOLEP_02165 [Clostridium leptum DSM 753] gi|156867197|gb|EDO60569.1| hypothetical protein CLOLEP_02165 [Clostridium leptum DSM 753] Length = 305 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 46/163 (28%), Positives = 82/163 (50%), Gaps = 7/163 (4%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA+VGRPNVGKS+L+N +LG + S+ TR ++ + + DT G+ KP Sbjct: 12 IAIVGRPNVGKSSLLNAMLGQKVAIVSSKPQTTRTRITGVLTQRETQLIFIDTPGLHKPR 71 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 ++V +S+ V +C +++ +A DL ++ + VLA+NK D Sbjct: 72 TRLGDYMVRSVTESVAGVDSC---MLVAEAGKEIAPADLELMKKFKSLSLPAVLAINKID 128 Query: 326 MVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLM 368 ++ DK L++ + K + Q + +S +TG+G+ L+ Sbjct: 129 LLEDKSVLIRQI----TKFMEQFDFDAVVPVSAQTGDGVGGLV 167 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 78/172 (45%), Gaps = 13/172 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKS+L N ++ +K+A+V + P TR R+ G +DT G+ + Sbjct: 12 IAIVGRPNVGKSSLLNAMLGQKVAIVSSKPQTTRTRITGVLTQRETQLIFIDTPGLHKPR 71 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD-- 122 + M ++ + + ++ I P D + + ++P ++ NK+D Sbjct: 72 T-RLGDYMVRSVTESVAGVDSCMLVAEAGKEIAPADLELMKKFKSLSLPAVLAINKIDLL 130 Query: 123 ----TRIAQ-RNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPN 169 I Q F E + DF +V +SA+ G L + ++ KQ P Sbjct: 131 EDKSVLIRQITKFMEQF--DFDAVVPVSAQTGDGVGGL---VDELKKQAMPG 177 >gi|187928024|ref|YP_001898511.1| GTP-binding protein Era [Ralstonia pickettii 12J] gi|241662606|ref|YP_002980966.1| GTP-binding protein Era [Ralstonia pickettii 12D] gi|187724914|gb|ACD26079.1| GTP-binding protein Era [Ralstonia pickettii 12J] gi|240864633|gb|ACS62294.1| GTP-binding protein Era [Ralstonia pickettii 12D] Length = 312 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 49/185 (26%), Positives = 87/185 (47%), Gaps = 11/185 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N LV +K+++ TR R+ G + F VDT G Sbjct: 24 VAIVGRPNVGKSTLMNALVGQKVSITSRKAQTTRHRITGIQTTDDAQFVFVDTPGFQTRH 83 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 ++ + +N + +LF++++ P D + S L ++ P+I++ NK+D Sbjct: 84 ATALNRSLNRAVTSTLTSVDAVLFVVEA-GRYGPDDEKVLSLLPRET-PVILIVNKVDRL 141 Query: 125 IA--QRNFYEIYSLD------FKEIVEISAEHDLGTSELHSVIFKIFKQKYPNH-PLEMI 175 A + ++ D F EIV +SA++ L ++ + P + P + Sbjct: 142 DAYTRAEMVAVFLQDMAQVFPFAEIVPMSAKNRDDIDRLLGIVRPYLPEGEPMYDPEALT 201 Query: 176 ENNKR 180 + ++R Sbjct: 202 DRSER 206 Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust. Identities = 32/120 (26%), Positives = 61/120 (50%), Gaps = 4/120 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VGRPNVGKSTL+N L+G +T ++ TR ++ + DT G + + Sbjct: 24 VAIVGRPNVGKSTLMNALVGQKVSITSRKAQTTRHRITGIQTTDDAQFVFVDTPGFQ--T 81 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 R +L +++ +++ S T ++ + + D +++ S+ V+L +NK D Sbjct: 82 RHATAL-NRSLNRAVTSTLTSVDAVLFVVEAGRYGPDDEKVL-SLLPRETPVILIVNKVD 139 >gi|90408840|ref|ZP_01216982.1| thiophene and furan oxidation protein ThdF [Psychromonas sp. CNPT3] gi|90310067|gb|EAS38210.1| thiophene and furan oxidation protein ThdF [Psychromonas sp. CNPT3] Length = 455 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 29/93 (31%), Positives = 58/93 (62%), Gaps = 3/93 (3%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 +++ + GRPN GKS+L+N L+G +R + +G TRD + + P+ I DTAG+R+ Sbjct: 218 MKVVIAGRPNAGKSSLLNSLVGADRAIVTEIAGTTRDVMREYIHIDGMPLHIIDTAGLRE 277 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDAT 296 + + +E+ ++++ + ++T + + +LDAT Sbjct: 278 SA---DEVEKIGIERAWKEIKTADRVLFMLDAT 307 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 43/143 (30%), Positives = 74/143 (51%), Gaps = 9/143 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + I G PN GKS+L N LV A+V G TRD + I+G+ +I+DTAG+ + Sbjct: 220 VVIAGRPNAGKSSLLNSLVGADRAIVTEIAGTTRDVMREYIHIDGMPLHIIDTAGLRESA 279 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAI-TSFLRK--KNIPIIIVSNKM 121 + + K ++ I A +LF++D+ + +AI F+++ +++ + +V NK Sbjct: 280 D-EVEKIGIERAWKEIKTADRVLFMLDATTTDSTDPYAIWPDFMKQLPESVGLTVVRNKA 338 Query: 122 D-----TRIAQRNFYEIYSLDFK 139 D + + N Y +YSL K Sbjct: 339 DLTGESVLVKEGNQYPVYSLSAK 361 >gi|15616624|ref|NP_244930.1| tRNA modification GTPase TrmE [Bacillus halodurans C-125] gi|14195295|sp|Q9RCA7|MNME_BACHD RecName: Full=tRNA modification GTPase mnmE gi|5672642|dbj|BAA82680.1| 77%-identity [Bacillus halodurans] gi|10176687|dbj|BAB07781.1| thiophen and furan oxidation [Bacillus halodurans C-125] Length = 458 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 48/159 (30%), Positives = 82/159 (51%), Gaps = 7/159 (4%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 I+G PNVGKS+L N LV + A+V + PG TRD + + GV +VDTAGI + ++ Sbjct: 225 IIGRPNVGKSSLLNSLVHENKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDI 284 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT--R 124 + + +++ + EA LIL +++ ++ D A+ F + I++ NK D + Sbjct: 285 -VERIGVERSREVLKEAELILLVLNFGEELSKEDEAL--FEAISGMEAIVIVNKTDVEQK 341 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIF 163 I E+ + + ++ S D G EL + I +F Sbjct: 342 IDLTRVRELAA--GRPVITTSIVQDQGIDELEAAIASLF 378 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 40/136 (29%), Positives = 76/136 (55%), Gaps = 6/136 (4%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L ++GRPNVGKS+L+N L+ N+ + G TRD + N + P+ + D Sbjct: 215 KILREGLSTVIIGRPNVGKSSLLNSLVHENKAIVTDIPGTTRDVIEEYVNVRGVPLRLVD 274 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ I E + V++S + ++ E +++L+ K+D + +++ +G Sbjct: 275 TAGIRETEDIVERI---GVERSREVLKEAELILLVLNFGEELSKEDEALFEAI--SGMEA 329 Query: 318 VLALNKWDMVSDKLNL 333 ++ +NK D V K++L Sbjct: 330 IVIVNKTD-VEQKIDL 344 >gi|87301104|ref|ZP_01083945.1| GTP-binding protein Era [Synechococcus sp. WH 5701] gi|87284072|gb|EAQ76025.1| GTP-binding protein Era [Synechococcus sp. WH 5701] Length = 343 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 48/174 (27%), Positives = 85/174 (48%), Gaps = 14/174 (8%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKSTL+N L+G +T + TR+ + + + + DT G+ KP Sbjct: 40 VALIGRPNVGKSTLLNHLVGEKVAITSPVAQTTRNRLRAILTTPSAQLVLLDTPGIHKPH 99 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + L ++ VK + ++ + ++L+D + P + D IV+ + + V++ALNK D Sbjct: 100 HL---LGERLVKSARSAIGEVDVVLLLVDGSEPAGRGDGFIVELLRFSRAPVLVALNKSD 156 Query: 326 MVSD-----------KLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLM 368 +V +L +L D R + D + S TG G +L+ Sbjct: 157 LVDPERAAELEASYRELLVLSDQRADPADPGQRRSDWPLLACSASTGAGCPELV 210 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 57/118 (48%), Gaps = 1/118 (0%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A++G PNVGKSTL N LV +K+A+ TR+RL ++DT GI Sbjct: 40 VALIGRPNVGKSTLLNHLVGEKVAITSPVAQTTRNRLRAILTTPSAQLVLLDTPGIHKPH 99 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + + +++ AI E ++L L+D D I LR P+++ NK D Sbjct: 100 HL-LGERLVKSARSAIGEVDVVLLLVDGSEPAGRGDGFIVELLRFSRAPVLVALNKSD 156 >gi|313205716|ref|YP_004044893.1| GTP-binding protein era [Riemerella anatipestifer DSM 15868] gi|312445032|gb|ADQ81387.1| GTP-binding protein Era [Riemerella anatipestifer DSM 15868] gi|315022889|gb|EFT35913.1| GTP-binding protein Era [Riemerella anatipestifer RA-YM] gi|325336843|gb|ADZ13117.1| GTPase [Riemerella anatipestifer RA-GD] Length = 291 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 43/120 (35%), Positives = 68/120 (56%), Gaps = 6/120 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIV--DTAGIAD 62 + IVG PN GKSTL N+L+ +K+A+V TR R++G I N IV DT G+ D Sbjct: 7 VNIVGKPNAGKSTLLNQLMGEKLAIVTKKAQTTRHRIFG--IYNEPDLQIVFSDTPGVLD 64 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 K + ++M D + ++ +A + LF++D P + I L K +P++I+ NK+D Sbjct: 65 PK-YGLQEKMMDFVKDSLQDADVFLFIVDVTDKDAPSEFLIEK-LNKIPVPVLILINKID 122 Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust. Identities = 25/91 (27%), Positives = 47/91 (51%), Gaps = 3/91 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 + +VG+PN GKSTL+N+L+G + ++ TR + +N + I DT G+ P Sbjct: 7 VNIVGKPNAGKSTLLNQLMGEKLAIVTKKAQTTRHRIFGIYNEPDLQIVFSDTPGVLDPK 66 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDAT 296 L++K + S++ + + ++D T Sbjct: 67 Y---GLQEKMMDFVKDSLQDADVFLFIVDVT 94 >gi|220932765|ref|YP_002509673.1| small GTP-binding protein [Halothermothrix orenii H 168] gi|219994075|gb|ACL70678.1| small GTP-binding protein [Halothermothrix orenii H 168] Length = 411 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 51/159 (32%), Positives = 84/159 (52%), Gaps = 7/159 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYG--QAIINGVIFNIVDTAGIAD 62 IA+ G NVGKSTL N L +++A+V + PG T D +Y + + G + ++DTAGI D Sbjct: 12 IAVFGRRNVGKSTLINTLTNQELALVSDVPGTTTDPVYKSMELLPLGPVV-MIDTAGIDD 70 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 S+ K +T I L + +ID G Y+ + + L+ NIP+++V NK+D Sbjct: 71 --VGSLGKLRIKKTREVIRRTDLAILVIDPFHGAGNYEKDLYNKLQDNNIPVVVVINKID 128 Query: 123 -TRIAQRNFYEIYSLDFKEI-VEISAEHDLGTSELHSVI 159 + +++ + L F +++SA G EL V+ Sbjct: 129 RVKGIKQDLLDKVKLLFGVTPIKVSAHSGTGIEELREVL 167 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 51/166 (30%), Positives = 79/166 (47%), Gaps = 9/166 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWN-WKNHPIEIFDTAGMRKP 264 IAV GR NVGKSTLIN L L G T D V S P+ + DTAG+ Sbjct: 12 IAVFGRRNVGKSTLINTLTNQELALVSDVPGTTTDPVYKSMELLPLGPVVMIDTAGIDD- 70 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 SL + +KK+ + +R + I+++D + + + + + VV+ +NK Sbjct: 71 ---VGSLGKLRIKKTREVIRRTDLAILVIDPFHGAGNYEKDLYNKLQDNNIPVVVVINKI 127 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVS 370 D V + QDL K +K L + I ++ SG E L +++V+ Sbjct: 128 DRVK---GIKQDLLDK-VKLLFGVTPIKVSAHSGTGIEELREVLVN 169 >gi|261392940|emb|CAX50525.1| putative Era-like GTP-binding protein [Neisseria meningitidis 8013] gi|309378208|emb|CBX23152.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 307 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 49/180 (27%), Positives = 86/180 (47%), Gaps = 9/180 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N L+ +K+++ TR+R+ G + F VDT G Sbjct: 21 VAIVGRPNVGKSTLMNHLIGQKISITSKKAQTTRNRVTGIYTDDTAQFVFVDTPGFQTDH 80 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 ++ ++N A+ ++F++++ T D + L K+ P+I+V NK+D Sbjct: 81 RNALNDRLNQNVTEALGGVDAVVFVVEAMR-FTDADRVVLKQL-PKHTPVILVVNKIDKD 138 Query: 125 IAQ-RNFYEIYSLDFK------EIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 A+ R E + + +SA+H L + L +I + P +P +M+ + Sbjct: 139 KAKDRYALEAFVAQVRAEFEFAAAEAVSAKHGLRIANLLELIKPYLPESVPMYPEDMVTD 198 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 4/120 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VGRPNVGKSTL+N L+G +T ++ TR+ V+ + DT G + Sbjct: 21 VAIVGRPNVGKSTLMNHLIGQKISITSKKAQTTRNRVTGIYTDDTAQFVFVDTPGFQTDH 80 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 R +L + + +++ + + +++A + F D R+V V+L +NK D Sbjct: 81 R--NALNDRLNQNVTEALGGVDAVVFVVEA-MRFTDAD-RVVLKQLPKHTPVILVVNKID 136 >gi|167560998|ref|ZP_02353914.1| tRNA modification GTPase TrmE [Burkholderia oklahomensis EO147] Length = 467 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 49/188 (26%), Positives = 89/188 (47%), Gaps = 11/188 (5%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + L + + G+PNVGKS+L+N L G + +G TRD V+ + + P+ I DTA Sbjct: 223 LREGLSVVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTA 282 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R+ + +E+ + ++ + + + LLDA D I + F G VV Sbjct: 283 GLRETE---DEVEKIGIARTWGEIERADVVLHLLDARSRLGADDQAIA-ARFPAGVPVVR 338 Query: 320 ALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWK 379 LNK D+ ++ + + + ++ +S + G+G+D L +L I W+ Sbjct: 339 VLNKTDLTDVPASVARGGGEEGGAEVCEV------RLSAKRGDGIDLLRGELLRIAG-WQ 391 Query: 380 TRITTSYL 387 + YL Sbjct: 392 AGAESVYL 399 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 67/119 (56%), Gaps = 2/119 (1%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 ++ + G PNVGKS+L N L ++A+V G TRD++ + G+ +I+DTAG+ + Sbjct: 228 SVVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRET 287 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 ++ + K +T I A ++L L+D+++ + D AI + +P++ V NK D Sbjct: 288 ED-EVEKIGIARTWGEIERADVVLHLLDARSRLGADDQAIAARF-PAGVPVVRVLNKTD 344 >gi|254281726|ref|ZP_04956694.1| GTP-binding protein Era [gamma proteobacterium NOR51-B] gi|219677929|gb|EED34278.1| GTP-binding protein Era [gamma proteobacterium NOR51-B] Length = 300 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 41/118 (34%), Positives = 62/118 (52%), Gaps = 1/118 (0%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N L+ +K+++ P TR+++ G VDT GI + Sbjct: 12 VAIVGRPNVGKSTLLNYLLGQKISITSRKPQTTRNQVLGIKTDGNTQIIFVDTPGIHSSE 71 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 +I + MN A+N+ L+L + D + T D + S K P+ +V NK+D Sbjct: 72 PRAINRFMNRTAAAAVNDVDLVLQVCD-RNRWTEEDDLVLSAASKSAAPVALVINKVD 128 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 41/136 (30%), Positives = 64/136 (47%), Gaps = 7/136 (5%) Query: 201 SKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAG 260 SK +A+VGRPNVGKSTL+N LLG +T + TR+ V N I DT G Sbjct: 7 SKCGYVAIVGRPNVGKSTLLNYLLGQKISITSRKPQTTRNQVLGIKTDGNTQIIFVDTPG 66 Query: 261 MR--KPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVV 318 + +P I + + + +V + + + D E+ DL ++ + + V Sbjct: 67 IHSSEPRAINRFMN----RTAAAAVNDVDLVLQVCDRNRWTEEDDL-VLSAASKSAAPVA 121 Query: 319 LALNKWDMVSDKLNLL 334 L +NK D++ LL Sbjct: 122 LVINKVDLLDHPDQLL 137 >gi|21673128|ref|NP_661193.1| GTP-binding protein Era [Chlorobium tepidum TLS] gi|21646203|gb|AAM71535.1| GTP-binding protein, Era/ThdF family [Chlorobium tepidum TLS] Length = 305 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 42/123 (34%), Positives = 64/123 (52%), Gaps = 6/123 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + VGAPN GKSTL NRL+ K+++V P TR ++ G + I+DT GI D K Sbjct: 11 VTFVGAPNAGKSTLLNRLLDHKLSIVTPKPQTTRKKITGIYHDDRSQIIILDTPGIMDPK 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITS-----FLRKKNIPIIIVSN 119 S+ + M + T ++ E+ +I+ LI + G P D S +++ P +I N Sbjct: 71 Q-SLHESMLEITRRSLRESDVIVALIPFQKGDEPIDRKFASELIEQWVKPTGKPFVIALN 129 Query: 120 KMD 122 K D Sbjct: 130 KAD 132 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 56/223 (25%), Positives = 106/223 (47%), Gaps = 25/223 (11%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 + VG PN GKSTL+NRLL + + + TR ++ ++ I I DT G+ P Sbjct: 11 VTFVGAPNAGKSTLLNRLLDHKLSIVTPKPQTTRKKITGIYHDDRSQIIILDTPGIMDPK 70 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFN----------TGH 315 +SL + ++ + +S+R + + L IPF+K D +D F TG Sbjct: 71 ---QSLHESMLEITRRSLRESDVIVAL----IPFQKGD-EPIDRKFASELIEQWVKPTGK 122 Query: 316 AVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEIN 375 V+ALNK D+V ++ ++ +T+ I + + ++ ++G L +L+ +L + Sbjct: 123 PFVIALNKADLVPEETA--KEAQTEIISKYKPVATLALSALTGGNIPELVELLRPLLPFD 180 Query: 376 K-LWKTRITTSYLNSWLQKTQLQNPPPTIFNRYNR-LKYITQI 416 + +W I ++ + ++ IF +Y R + Y T++ Sbjct: 181 EPIWPDDILSTEPERFFVGEIIRE---KIFLQYGREIPYSTEV 220 >gi|205422245|sp|Q13E22|MNME_RHOPS RecName: Full=tRNA modification GTPase mnmE Length = 460 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 41/120 (34%), Positives = 64/120 (53%), Gaps = 10/120 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI G PNVGKSTL NRL ++++A+V H G TRD + Q + G ++DTAGI + Sbjct: 221 VAIAGPPNVGKSTLINRLARREVAIVSPHAGTTRDVIEVQLDLGGYPVTVIDTAGIRE-S 279 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N + ++ + EA L+L+L + + +T + P+ V NK+D R Sbjct: 280 NDPVEQEGVRRARARAAEADLVLWLGEGE---------MTGDAVAASAPVWRVRNKIDLR 330 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 52/225 (23%), Positives = 98/225 (43%), Gaps = 34/225 (15%) Query: 187 ENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISW 246 E + ++G+S + + + +A+ G PNVGKSTLINRL + +G TRD + + Sbjct: 204 EVLAAQGRS--ERLRDGMVVAIAGPPNVGKSTLINRLARREVAIVSPHAGTTRDVIEVQL 261 Query: 247 NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRI 306 + +P+ + DTAG+R+ + + +EQ+ V+++ + + L + + Sbjct: 262 DLGGYPVTVIDTAGIRESN---DPVEQEGVRRARARAAEADLVLWLGEGEM--------- 309 Query: 307 VDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLP-------------QIGDIYI 353 TG AV + W V +K++L LP G Sbjct: 310 ------TGDAVAASAPVW-RVRNKIDLRGGEGDGGPVGLPVEPLAAALRQTDGAWGGNAA 362 Query: 354 NTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQN 398 IS G+GL +L+ ++ + + T+ ++ +T LQ+ Sbjct: 363 FEISALRGQGLGELIAAIEDFAAQYFASGETALISRARHRTLLQD 407 >gi|255033904|ref|YP_003084525.1| tRNA modification GTPase TrmE [Dyadobacter fermentans DSM 18053] gi|254946660|gb|ACT91360.1| tRNA modification GTPase TrmE [Dyadobacter fermentans DSM 18053] Length = 455 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 71/119 (59%), Gaps = 5/119 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G+PNVGKSTL N L+ ++ A+V + G TRD + +++G+ F +DTAGI + Sbjct: 226 VAIIGSPNVGKSTLLNALLNEEKAIVTSIAGTTRDVIEDTIVLDGLKFRFIDTAGIRE-- 283 Query: 65 NCSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + + + ++++ A+++A +++FL DS T D+ + L ++ V NK D Sbjct: 284 TTDVVESIGIERSKAAMDKADIVIFLFDSAE--TLADNRALAALLPAGKEVLFVLNKTD 340 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 66/127 (51%), Gaps = 5/127 (3%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 I + + +A++G PNVGKSTL+N LL + + S +G TRD + + DTA Sbjct: 220 IKEGVPVAIIGSPNVGKSTLLNALLNEEKAIVTSIAGTTRDVIEDTIVLDGLKFRFIDTA 279 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R+ + + ES+ +++S ++ + I L D+ D R + ++ G V+ Sbjct: 280 GIRETTDVVESI---GIERSKAAMDKADIVIFLFDSAETL--ADNRALAALLPAGKEVLF 334 Query: 320 ALNKWDM 326 LNK D+ Sbjct: 335 VLNKTDI 341 >gi|239828707|ref|YP_002951331.1| tRNA modification GTPase TrmE [Geobacillus sp. WCH70] gi|239809000|gb|ACS26065.1| tRNA modification GTPase TrmE [Geobacillus sp. WCH70] Length = 461 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 37/129 (28%), Positives = 72/129 (55%), Gaps = 5/129 (3%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L ++GRPNVGKS+L+N L+ N+ + G TRD + N + P+ + D Sbjct: 218 KILREGLATVIIGRPNVGKSSLLNALVHENKAIVTDIPGTTRDVIEEYVNVRGVPLRLID 277 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ + E + V++S Q ++ + +++L+ P ++D ++ + V G Sbjct: 278 TAGIRETEDVVERI---GVERSRQMLKEADLILLVLNYHEPLTEEDEKLFEMV--KGMDF 332 Query: 318 VLALNKWDM 326 ++ +NK D+ Sbjct: 333 IVIVNKTDL 341 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 39/116 (33%), Positives = 65/116 (56%), Gaps = 3/116 (2%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 I+G PNVGKS+L N LV + A+V + PG TRD + + GV ++DTAGI + ++ Sbjct: 228 IIGRPNVGKSSLLNALVHENKAIVTDIPGTTRDVIEEYVNVRGVPLRLIDTAGIRETEDV 287 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + + +++ + EA LIL +++ +T D + F K + I++ NK D Sbjct: 288 -VERIGVERSRQMLKEADLILLVLNYHEPLTEEDEKL--FEMVKGMDFIVIVNKTD 340 >gi|82702877|ref|YP_412443.1| GTP-binding protein Era [Nitrosospira multiformis ATCC 25196] gi|82410942|gb|ABB75051.1| GTP-binding protein Era [Nitrosospira multiformis ATCC 25196] Length = 302 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 46/129 (35%), Positives = 72/129 (55%), Gaps = 4/129 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA+VGRPNVGKSTL+NRL+G +T +S TR + + + DT G + + Sbjct: 17 IAIVGRPNVGKSTLLNRLVGQKISITSKKSQTTRHRIHGIFTDEYSQFVFVDTPGFQ--T 74 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 R T L + Q++R + I++++A + F+ +D ++V + VVLALNK D Sbjct: 75 RHTNRLNSGMNRLVTQTLRDVDIVILVIEA-MRFDDRD-KLVVKLLPKSKPVVLALNKID 132 Query: 326 MVSDKLNLL 334 ++DK LL Sbjct: 133 RLTDKSQLL 141 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 54/180 (30%), Positives = 84/180 (46%), Gaps = 13/180 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL NRLV +K+++ TR R++G F VDT G Sbjct: 17 IAIVGRPNVGKSTLLNRLVGQKISITSKKSQTTRHRIHGIFTDEYSQFVFVDTPGFQTRH 76 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + MN + + +++ +I++ D + L K P+++ NK+D R Sbjct: 77 TNRLNSGMNRLVTQTLRDVDIVILVIEA-MRFDDRDKLVVKLLPKSK-PVVLALNKID-R 133 Query: 125 IAQRN----FYEIYS--LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 + ++ F E S DF +V ISAE+ EL + I + P +P +E+ Sbjct: 134 LTDKSQLLPFLEKMSKEFDFAAMVPISAENGGQLPELIAAI----RPHLPQNPPLFLEDE 189 >gi|325265449|ref|ZP_08132172.1| tRNA modification GTPase TrmE [Clostridium sp. D5] gi|324029307|gb|EGB90599.1| tRNA modification GTPase TrmE [Clostridium sp. D5] Length = 470 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 67/135 (49%), Gaps = 5/135 (3%) Query: 192 EGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNH 251 E S + + + ++ + G+PN GKS+L+N L G R + G TRD++ Sbjct: 207 ESSDSGRIMKEGIQTVIAGKPNAGKSSLLNVLAGRERAIVTDIEGTTRDALEEQIQLNGL 266 Query: 252 PIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVF 311 + + DTAG+R+ I +E+ V K+ V+ + I + DA+ P +K D I+ Sbjct: 267 TLNMVDTAGIRETDDI---IEKMGVDKARDYVKNADLIIYVADASRPLDKNDEDIIR--L 321 Query: 312 NTGHAVVLALNKWDM 326 G ++ LNK D+ Sbjct: 322 TAGKKCIILLNKSDL 336 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 49/169 (28%), Positives = 80/169 (47%), Gaps = 13/169 (7%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 I G PN GKS+L N L ++ A+V + G TRD L Q +NG+ N+VDTAGI + + Sbjct: 223 IAGKPNAGKSSLLNVLAGRERAIVTDIEGTTRDALEEQIQLNGLTLNMVDTAGIRETDDI 282 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT--- 123 I K D+ + A LI+++ D+ + D I K I++ + ++T Sbjct: 283 -IEKMGVDKARDYVKNADLIIYVADASRPLDKNDEDIIRLTAGKKCIILLNKSDLETVIT 341 Query: 124 -RIAQRNFYEIYSLDFKE--------IVEISAEHDLGTSELHSVIFKIF 163 I Q I + E +++ISA+ + G E ++ +F Sbjct: 342 KEILQNKIKNILNETENEGINSIYIPMIDISAKEEQGLQEFEDILNTMF 390 >gi|157413842|ref|YP_001484708.1| GTP-binding protein Era [Prochlorococcus marinus str. MIT 9215] gi|157388417|gb|ABV51122.1| GTP-binding protein ERA [Prochlorococcus marinus str. MIT 9215] Length = 303 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 48/168 (28%), Positives = 87/168 (51%), Gaps = 9/168 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP- 264 + ++GRPNVGKSTLIN+L+G +T + TR+ + +N I DT G+ KP Sbjct: 9 VTLLGRPNVGKSTLINKLIGEKITITSPVAQTTRNKLKGILTTENGQIIFVDTPGVHKPH 68 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 R+ E L VK + ++ + I ++D++ K D I++ + + ++ LNKW Sbjct: 69 HRLGEIL----VKNAKSAINGVDMVIFVIDSSEAPGKGDEYILNFLIDNKIKFIVVLNKW 124 Query: 325 DMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVL 372 D+V+ + ++LR + + + ++S G+G +L+ VL Sbjct: 125 DLVNKE---FRNLRLDQYRRFFGMNRNF-QSVSASQGQGCSELVDMVL 168 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 50/166 (30%), Positives = 79/166 (47%), Gaps = 16/166 (9%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAII-NGVIFNIVDTAGIADG 63 + ++G PNVGKSTL N+L+ +K+ + TR++L G NG I VDT G+ Sbjct: 9 VTLLGRPNVGKSTLINKLIGEKITITSPVAQTTRNKLKGILTTENGQII-FVDTPGVHK- 66 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD- 122 + + + + + AIN +++F+IDS D I +FL I I+V NK D Sbjct: 67 PHHRLGEILVKNAKSAINGVDMVIFVIDSSEAPGKGDEYILNFLIDNKIKFIVVLNKWDL 126 Query: 123 -------TRIAQ-RNFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 R+ Q R F+ + + +SA G SEL ++ Sbjct: 127 VNKEFRNLRLDQYRRFFGMN----RNFQSVSASQGQGCSELVDMVL 168 >gi|145637307|ref|ZP_01792968.1| tRNA modification GTPase [Haemophilus influenzae PittHH] gi|145269559|gb|EDK09501.1| tRNA modification GTPase [Haemophilus influenzae PittHH] Length = 452 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 76/150 (50%), Gaps = 10/150 (6%) Query: 167 YPNHPLEM-----IENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLIN 221 +P+ ++ IE N R + E++ SE K + + +++ + GRPN GKS+L+N Sbjct: 174 FPDEEIDFLADGKIEANLRGIINQLEDVRSEAKQG-SILREGMKVVIAGRPNAGKSSLLN 232 Query: 222 RLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQ 281 L G + +G TRD + + P+ I DTAG+R T+ +E+ + ++ Sbjct: 233 ALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDA---TDEVERIGISRAWT 289 Query: 282 SVRTCETTIVLLDATIPFEKQDLRIVDSVF 311 + + I++LD++ P E DL V S F Sbjct: 290 EIEQADRIILMLDSSDP-ESVDLSKVRSEF 318 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 42/140 (30%), Positives = 70/140 (50%), Gaps = 9/140 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + I G PN GKS+L N L ++ A+V + G TRD L I+G+ +I+DTAG+ D Sbjct: 217 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAT 276 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSK-AGITPYDHAITSFLRK--KNIPIIIVSNKM 121 + + + + I +A I+ ++DS + FL K +P+ +V NK+ Sbjct: 277 D-EVERIGISRAWTEIEQADRIILMLDSSDPESVDLSKVRSEFLAKLPSTLPVTMVRNKI 335 Query: 122 D-----TRIAQRNFYEIYSL 136 D +++ Y+I SL Sbjct: 336 DLNGEQASESEQGGYQIISL 355 >gi|225868116|ref|YP_002744064.1| GTP-binding protein Era homolog [Streptococcus equi subsp. zooepidemicus] gi|259646273|sp|C0MCD8|ERA_STRS7 RecName: Full=GTPase Era gi|225701392|emb|CAW98467.1| GTP-binding protein Era homolog [Streptococcus equi subsp. zooepidemicus] Length = 298 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 45/146 (30%), Positives = 73/146 (50%), Gaps = 5/146 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKST N ++ +K+A++ + TR+++ G +DT GI K Sbjct: 7 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQSTRNKIMGIYTTETEQIVFIDTPGIHKPK 66 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 ++ M + + E +LF++ + D I L+ IP+I+V NK+D Sbjct: 67 -TALGDFMVESAYSTLREVETVLFMVPADEKRGKGDDMIIERLKAARIPVILVINKIDKV 125 Query: 125 IAQRNFYEI----YSLDFKEIVEISA 146 + +I +DFKEIV ISA Sbjct: 126 HPDQLLEQIDDFRSQMDFKEIVPISA 151 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 38/137 (27%), Positives = 68/137 (49%), Gaps = 5/137 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKST +N ++G + ++ TR+ + + + I DT G+ KP Sbjct: 7 VAILGRPNVGKSTFLNHVMGQKIAIMSDKAQSTRNKIMGIYTTETEQIVFIDTPGIHKPK 66 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +L V+ + ++R ET + ++ A K D I++ + V+L +NK D Sbjct: 67 T---ALGDFMVESAYSTLREVETVLFMVPADEKRGKGDDMIIERLKAARIPVILVINKID 123 Query: 326 MV--SDKLNLLQDLRTK 340 V L + D R++ Sbjct: 124 KVHPDQLLEQIDDFRSQ 140 >gi|77464808|ref|YP_354312.1| tRNA modification GTPase TrmE [Rhodobacter sphaeroides 2.4.1] gi|123590764|sp|Q3IYH3|MNME_RHOS4 RecName: Full=tRNA modification GTPase mnmE gi|77389226|gb|ABA80411.1| tRNA modification GTPase trmE [Rhodobacter sphaeroides 2.4.1] Length = 428 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 50/182 (27%), Positives = 80/182 (43%), Gaps = 34/182 (18%) Query: 192 EGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNH 251 +G + I +A+VG PN GKSTL+N L +T +G TRD + + + Sbjct: 201 DGSRIAERIRDGFEVAIVGAPNAGKSTLLNALARREAAITSEIAGTTRDVIEVRMDLDGL 260 Query: 252 PIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVF 311 P+ DTAG+R S + ESL +++++ + + + LLD + P ++ D V Sbjct: 261 PVTFLDTAGLRDTSDLVESL---GIERAVTRAKAADLRVFLLDDSGPLSGITVQADDLVV 317 Query: 312 NTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSV 371 K D L Q LR +SGRTGEG+ +L+ ++ Sbjct: 318 Q---------GKAD-----LRPGQGLR-----------------LSGRTGEGVPELVAAI 346 Query: 372 LE 373 E Sbjct: 347 GE 348 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 25/60 (41%), Positives = 38/60 (63%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + +AIVGAPN GKSTL N L +++ A+ G TRD + + ++G+ +DTAG+ D Sbjct: 213 FEVAIVGAPNAGKSTLLNALARREAAITSEIAGTTRDVIEVRMDLDGLPVTFLDTAGLRD 272 >gi|261401059|ref|ZP_05987184.1| GTP-binding protein Era [Neisseria lactamica ATCC 23970] gi|269208948|gb|EEZ75403.1| GTP-binding protein Era [Neisseria lactamica ATCC 23970] Length = 318 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 49/180 (27%), Positives = 86/180 (47%), Gaps = 9/180 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N L+ +K+++ TR+R+ G + F VDT G Sbjct: 32 VAIVGRPNVGKSTLMNHLIGQKISITSKKAQTTRNRVTGIYTDDTAQFVFVDTPGFQTDH 91 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 ++ ++N A+ ++F++++ T D + L K+ P+I+V NK+D Sbjct: 92 RNALNDRLNQNVTEALGGVDAVVFVVEAMR-FTDADRVVLKQL-PKHTPVILVVNKIDKD 149 Query: 125 IAQ-RNFYEIYSLDFK------EIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 A+ R E + + +SA+H L + L +I + P +P +M+ + Sbjct: 150 KAKDRYALEAFVAQVRAEFEFAAAEAVSAKHGLRIANLLELIKPYLPESVPMYPEDMVTD 209 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 4/120 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VGRPNVGKSTL+N L+G +T ++ TR+ V+ + DT G + Sbjct: 32 VAIVGRPNVGKSTLMNHLIGQKISITSKKAQTTRNRVTGIYTDDTAQFVFVDTPGFQTDH 91 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 R +L + + +++ + + +++A + F D R+V V+L +NK D Sbjct: 92 R--NALNDRLNQNVTEALGGVDAVVFVVEA-MRFTDAD-RVVLKQLPKHTPVILVVNKID 147 >gi|33240804|ref|NP_875746.1| GTP-binding protein Era [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33238333|gb|AAQ00399.1| GTPase, Era homolog [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 314 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 41/118 (34%), Positives = 61/118 (51%), Gaps = 1/118 (0%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A++G PNVGKSTL N+ V +K+A+ TR+RL IN VDT GI Sbjct: 16 VALIGRPNVGKSTLINQFVGEKVAITSPVAQTTRNRLRAILTINKAQLVFVDTPGIHKPH 75 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + + +++ + ++ I E IL + D D I L+ +NIP+ IV NK D Sbjct: 76 HL-LGERLVNTSKKVIGEVDSILLIFDGNEPPGSGDSYIVKLLKGQNIPVTIVLNKWD 132 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 37/124 (29%), Positives = 63/124 (50%), Gaps = 3/124 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKSTLIN+ +G +T + TR+ + + DT G+ KP Sbjct: 16 VALIGRPNVGKSTLINQFVGEKVAITSPVAQTTRNRLRAILTINKAQLVFVDTPGIHKPH 75 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + L ++ V S + + ++ +++ D P D IV + V + LNKWD Sbjct: 76 HL---LGERLVNTSKKVIGEVDSILLIFDGNEPPGSGDSYIVKLLKGQNIPVTIVLNKWD 132 Query: 326 MVSD 329 +V++ Sbjct: 133 LVTE 136 >gi|91974909|ref|YP_567568.1| tRNA modification GTPase TrmE [Rhodopseudomonas palustris BisB5] gi|91681365|gb|ABE37667.1| tRNA modification GTPase trmE [Rhodopseudomonas palustris BisB5] Length = 462 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 41/120 (34%), Positives = 64/120 (53%), Gaps = 10/120 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI G PNVGKSTL NRL ++++A+V H G TRD + Q + G ++DTAGI + Sbjct: 223 VAIAGPPNVGKSTLINRLARREVAIVSPHAGTTRDVIEVQLDLGGYPVTVIDTAGIRE-S 281 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 N + ++ + EA L+L+L + + +T + P+ V NK+D R Sbjct: 282 NDPVEQEGVRRARARAAEADLVLWLGEGE---------MTGDAVAASAPVWRVRNKIDLR 332 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 52/225 (23%), Positives = 98/225 (43%), Gaps = 34/225 (15%) Query: 187 ENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISW 246 E + ++G+S + + + +A+ G PNVGKSTLINRL + +G TRD + + Sbjct: 206 EVLAAQGRS--ERLRDGMVVAIAGPPNVGKSTLINRLARREVAIVSPHAGTTRDVIEVQL 263 Query: 247 NWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRI 306 + +P+ + DTAG+R+ + + +EQ+ V+++ + + L + + Sbjct: 264 DLGGYPVTVIDTAGIRESN---DPVEQEGVRRARARAAEADLVLWLGEGEM--------- 311 Query: 307 VDSVFNTGHAVVLALNKWDMVSDKLNLLQDLRTKAIKNLP-------------QIGDIYI 353 TG AV + W V +K++L LP G Sbjct: 312 ------TGDAVAASAPVW-RVRNKIDLRGGEGDGGPVGLPVEPLAAALRQTDGAWGGNAA 364 Query: 354 NTISGRTGEGLDDLMVSVLEINKLWKTRITTSYLNSWLQKTQLQN 398 IS G+GL +L+ ++ + + T+ ++ +T LQ+ Sbjct: 365 FEISALRGQGLGELIAAIEDFAAQYFASGETALISRARHRTLLQD 409 >gi|327403776|ref|YP_004344614.1| GTP-binding protein Era-like-protein [Fluviicola taffensis DSM 16823] gi|327319284|gb|AEA43776.1| GTP-binding protein Era-like-protein [Fluviicola taffensis DSM 16823] Length = 291 Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 47/150 (31%), Positives = 82/150 (54%), Gaps = 10/150 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIV--DTAGIAD 62 + IVG+PNVGKSTL N LV +K+++V + TR R++G ++NG IV DT G+ + Sbjct: 8 VNIVGSPNVGKSTLMNGLVGEKLSIVTSKAQTTRHRIHG--LVNGDDHQIVFSDTPGVVN 65 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + + + M E + +A ++LF+ D + + ++ K IP++++ NK+D Sbjct: 66 A-SYKLHEAMMSYVESSFKDADILLFITDMSENEMNHKETLERIVKLK-IPVLLILNKID 123 Query: 123 ----TRIAQRNFYEIYSLDFKEIVEISAEH 148 T++ +R Y + EI+ SA H Sbjct: 124 LADQTKLEERVQYWKEKVPNAEIIPTSALH 153 Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 32/56 (57%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGM 261 + +VG PNVGKSTL+N L+G + S++ TR + N +H I DT G+ Sbjct: 8 VNIVGSPNVGKSTLMNGLVGEKLSIVTSKAQTTRHRIHGLVNGDDHQIVFSDTPGV 63 >gi|323465554|gb|ADX77707.1| tRNA modification GTPase TrmE [Staphylococcus pseudintermedius ED99] Length = 460 Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 47/159 (29%), Positives = 84/159 (52%), Gaps = 7/159 (4%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 IVG PNVGKS++ N L++ A+V G TRD L + GV +VDTAGI + ++ Sbjct: 227 IVGKPNVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRETEDI 286 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 + + +++ A++EA LILF+++ +T D + ++ ++ +II ++ R+ Sbjct: 287 -VERIGVERSRKALSEADLILFVLNYNEPLTEDDRKLYEVIKNEDAIVIINKTDLEQRL- 344 Query: 127 QRNFYEIYSL--DFKEIVEISAEHDLGTSELHSVIFKIF 163 + E+ ++ D I++ S G EL I +F Sbjct: 345 --DLAEVETMVGDMP-IIQTSMLQQQGIDELEIQIRDLF 380 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 44/174 (25%), Positives = 90/174 (51%), Gaps = 14/174 (8%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L +VG+PNVGKS+++N L+ N+ + +G TRD + N + P+ + D Sbjct: 217 KIMREGLSTVIVGKPNVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVD 276 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ I E + V++S +++ + + +L+ P + D ++ + + N V Sbjct: 277 TAGIRETEDIVERI---GVERSRKALSEADLILFVLNYNEPLTEDDRKLYEVIKNEDAIV 333 Query: 318 VLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSV 371 ++ +K +L Q L ++ + +GD+ I S +G+D+L + + Sbjct: 334 II---------NKTDLEQRLDLAEVETM--VGDMPIIQTSMLQQQGIDELEIQI 376 >gi|323340794|ref|ZP_08081046.1| GTP-binding protein Era [Lactobacillus ruminis ATCC 25644] gi|323091917|gb|EFZ34537.1| GTP-binding protein Era [Lactobacillus ruminis ATCC 25644] Length = 300 Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 52/184 (28%), Positives = 87/184 (47%), Gaps = 15/184 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAI+G PNVGKST NR++ +K+A++ + TR+++ G + +DT GI + Sbjct: 10 IAILGRPNVGKSTFLNRIIGQKIAIMSDKAQTTRNKIQGIYTTDDAQIVFIDTPGIHKPQ 69 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + M + +NE ++F+++++ D I L+ PI + NK+D R Sbjct: 70 S-RLGDFMVESALSTLNEVDAVIFMVNAEQKRGRGDDFIIERLKNVKKPIYLAINKID-R 127 Query: 125 IAQRNFYEIY-----SLDFKEIVEISAEHDLGTSELHSVIFKIF---KQKYP-----NHP 171 I + E+ +LDFK++ ISA E + K Q YP +HP Sbjct: 128 IHPDHLLEVMDDYRGALDFKDVFPISALQGNNCQEFIDTLIKDLPEGPQYYPTDQVTDHP 187 Query: 172 LEMI 175 I Sbjct: 188 ERFI 191 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 38/136 (27%), Positives = 72/136 (52%), Gaps = 7/136 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP- 264 IA++GRPNVGKST +NR++G + ++ TR+ + + + I DT G+ KP Sbjct: 10 IAILGRPNVGKSTFLNRIIGQKIAIMSDKAQTTRNKIQGIYTTDDAQIVFIDTPGIHKPQ 69 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKW 324 SR+ + + V+ ++ ++ + I +++A + D I++ + N + LA+NK Sbjct: 70 SRLGDFM----VESALSTLNEVDAVIFMVNAEQKRGRGDDFIIERLKNVKKPIYLAINKI 125 Query: 325 DMVSDK--LNLLQDLR 338 D + L ++ D R Sbjct: 126 DRIHPDHLLEVMDDYR 141 >gi|53802851|ref|YP_115425.1| tRNA modification GTPase TrmE [Methylococcus capsulatus str. Bath] gi|81823572|sp|Q602M5|MNME_METCA RecName: Full=tRNA modification GTPase mnmE gi|53756612|gb|AAU90903.1| tRNA modification GTPase TrmE [Methylococcus capsulatus str. Bath] Length = 448 Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 43/119 (36%), Positives = 66/119 (55%), Gaps = 4/119 (3%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T I G PNVGKS+L N L + +A+V PG TRD L + G+ +IVDTAG+ D Sbjct: 219 TTVIAGRPNVGKSSLLNALAGRDLAIVTEIPGTTRDLLRESLQVGGLPLHIVDTAGLRDS 278 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 ++ I ++ + A+ A IL + D++ T A+ + L + IP+I + NK+D Sbjct: 279 ED-PIEREGIRRARDALANADCILLVCDARH--TEAGDALPADL-PETIPLIRIFNKID 333 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/166 (26%), Positives = 75/166 (45%), Gaps = 18/166 (10%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 + + L + GRPNVGKS+L+N L G + + G TRD + S P+ I DTA Sbjct: 214 LREGLTTVIAGRPNVGKSSLLNALAGRDLAIVTEIPGTTRDLLRESLQVGGLPLHIVDTA 273 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R + +E++ ++++ ++ + +++ DA E D D ++ Sbjct: 274 GLRDSE---DPIEREGIRRARDALANADCILLVCDAR-HTEAGDALPAD--LPETIPLIR 327 Query: 320 ALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLD 365 NK D+ +L + T I +S RTGEG+D Sbjct: 328 IFNKIDLTGAPASLTVERETTVIH------------LSARTGEGVD 361 >gi|145220471|ref|YP_001131180.1| tRNA modification GTPase TrmE [Prosthecochloris vibrioformis DSM 265] gi|205415794|sp|A4SGR9|MNME_PROVI RecName: Full=tRNA modification GTPase mnmE gi|145206635|gb|ABP37678.1| tRNA modification GTPase trmE [Chlorobium phaeovibrioides DSM 265] Length = 473 Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 41/118 (34%), Positives = 64/118 (54%), Gaps = 3/118 (2%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 I G PN GKSTL N L+ + A+V + PG TRD + I +F + DTAG+ Sbjct: 235 IAGRPNAGKSTLLNALLGHERAIVSHMPGTTRDYIEECFIHEKTMFRLTDTAGLRHSDE- 293 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIP--IIIVSNKMD 122 + + ++ I+EA L+L++IDS G + A LR+++ +I+V+NK D Sbjct: 294 EVEHEGIRRSYRKISEADLMLYIIDSSEGDMQQEAAAARELRQRHPESRMIVVANKTD 351 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 58/230 (25%), Positives = 101/230 (43%), Gaps = 17/230 (7%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 +++ + + GRPN GKSTL+N LLG+ R + G TRD + + + + DTA Sbjct: 227 LTEGVAAVIAGRPNAGKSTLLNALLGHERAIVSHMPGTTRDYIEECFIHEKTMFRLTDTA 286 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDAT---IPFEKQDLRIVDSVFNTGHA 316 G+R E +E + +++S + + + + ++D++ + E R + Sbjct: 287 GLRHSD---EEVEHEGIRRSYRKISEADLMLYIIDSSEGDMQQEAAAARELRQRHPESRM 343 Query: 317 VVLALNKWDMVSDKLNLLQDLRTK----AIKNLPQIGDIYINTISGRTG--EGLDDLM-- 368 +V+A NK D+ D ++ L+++ I GD S G EGLD L Sbjct: 344 IVVA-NKTDLAPDAGGMIAQLQSETACPVIAMAASKGDGLNELKSTMAGMVEGLDKLHEA 402 Query: 369 -VSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTI-FNRYNRLKYITQI 416 V V + R L++ LQ + P I F + L Y+ +I Sbjct: 403 SVLVTSLRHYEALRNAADSLDNALQLITAREPAELIAFELRSALDYVGEI 452 >gi|121605951|ref|YP_983280.1| GTP-binding protein Era [Polaromonas naphthalenivorans CJ2] gi|120594920|gb|ABM38359.1| GTP-binding protein Era [Polaromonas naphthalenivorans CJ2] Length = 357 Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 54/174 (31%), Positives = 83/174 (47%), Gaps = 15/174 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N LV +K+++ TR R+ G F VDT G Sbjct: 72 IAIVGKPNVGKSTLLNALVGQKVSITSRKAQTTRHRITGMRTRAATQFVFVDTPGFQTRH 131 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 ++ + +N A+N+ LI+F++++ D + + L +K P I+++NK D Sbjct: 132 GNALNRSLNRTVVGAVNDVDLIVFVVEA-GQFNLADAKVLALLPEKT-PAILLANKFDLI 189 Query: 124 -RIAQ-----RNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHP 171 R A+ R E + +F E V +SA + L F I ++ P P Sbjct: 190 HRRAEIAPWLRAMQERH--NFSEFVPMSANNAKDVERL----FGICEKYLPVQP 237 Score = 43.1 bits (100), Expect = 0.097, Method: Compositional matrix adjust. Identities = 35/134 (26%), Positives = 67/134 (50%), Gaps = 4/134 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA+VG+PNVGKSTL+N L+G +T ++ TR ++ DT G + + Sbjct: 72 IAIVGKPNVGKSTLLNALVGQKVSITSRKAQTTRHRITGMRTRAATQFVFVDTPGFQ--T 129 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 R +L + + + +V + + +++A F D +++ + A++LA NK+D Sbjct: 130 RHGNALNRSLNRTVVGAVNDVDLIVFVVEAG-QFNLADAKVLALLPEKTPAILLA-NKFD 187 Query: 326 MVSDKLNLLQDLRT 339 ++ + + LR Sbjct: 188 LIHRRAEIAPWLRA 201 >gi|303228568|ref|ZP_07315395.1| tRNA modification GTPase TrmE [Veillonella atypica ACS-134-V-Col7a] gi|302516747|gb|EFL58662.1| tRNA modification GTPase TrmE [Veillonella atypica ACS-134-V-Col7a] Length = 461 Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 47/157 (29%), Positives = 80/157 (50%), Gaps = 16/157 (10%) Query: 208 VVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRI 267 +VGRPN GKS+L+N LL NR + G TRDS+ + + + DTAG+R Sbjct: 228 IVGRPNAGKSSLMNALLRENRAIVTDIPGTTRDSIEEYMTVEGISLRLIDTAGIRDTQDT 287 Query: 268 TESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMV 327 E+L V+++ + + + ++D + P +++ I+ SV +G ++ LNK Sbjct: 288 VEAL---GVERARDYINKADIVLCVIDGSTPLTSEEIEILTSV--SGLNTMVLLNK---- 338 Query: 328 SDKLNLLQDLRTKAIKNLPQIGDI-YINTISGRTGEG 363 SD ++ D +N+ + G+ I IS + GEG Sbjct: 339 SDVAQVVTD------ENIEEHGNFTAIERISAKDGEG 369 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 45/152 (29%), Positives = 79/152 (51%), Gaps = 3/152 (1%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG 63 T IVG PN GKS+L N L+++ A+V + PG TRD + + G+ ++DTAGI D Sbjct: 225 TTVIVGRPNAGKSSLMNALLRENRAIVTDIPGTTRDSIEEYMTVEGISLRLIDTAGIRDT 284 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 ++ A + ++ IN+A ++L +ID +T + I + + N +++ + + Sbjct: 285 QDTVEALGV-ERARDYINKADIVLCVIDGSTPLTSEEIEILTSVSGLNTMVLLNKSDVAQ 343 Query: 124 RIAQRNFYEIYSLDFKEIVEISAEHDLGTSEL 155 + N E +F I ISA+ G++ L Sbjct: 344 VVTDENIEE--HGNFTAIERISAKDGEGSAVL 373 >gi|229846059|ref|ZP_04466171.1| tRNA modification GTPase TrmE [Haemophilus influenzae 7P49H1] gi|229811063|gb|EEP46780.1| tRNA modification GTPase TrmE [Haemophilus influenzae 7P49H1] Length = 452 Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 76/150 (50%), Gaps = 10/150 (6%) Query: 167 YPNHPLEM-----IENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLIN 221 +P+ ++ IE N R + E++ SE K + + +++ + GRPN GKS+L+N Sbjct: 174 FPDEEIDFLADGKIEANLRGIINQLEDVRSEAKQG-SILREGMKVVIAGRPNAGKSSLLN 232 Query: 222 RLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQ 281 L G + +G TRD + + P+ I DTAG+R T+ +E+ + ++ Sbjct: 233 ALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDA---TDEVERIGISRAWT 289 Query: 282 SVRTCETTIVLLDATIPFEKQDLRIVDSVF 311 + + I++LD++ P E DL V S F Sbjct: 290 EIEQADRIILMLDSSDP-ESVDLSKVRSEF 318 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 43/140 (30%), Positives = 69/140 (49%), Gaps = 9/140 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + I G PN GKS+L N L ++ A+V + G TRD L I+G+ +I+DTAG+ D Sbjct: 217 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAT 276 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSK-AGITPYDHAITSFLRK--KNIPIIIVSNKM 121 + + + + I +A I+ ++DS + FL K +P+ IV NK+ Sbjct: 277 D-EVERIGISRAWTEIEQADRIILMLDSSDPESVDLSKVRSEFLAKLPSTLPVTIVRNKI 335 Query: 122 D-----TRIAQRNFYEIYSL 136 D ++ Y+I SL Sbjct: 336 DLNGEQASESEEGGYQIISL 355 >gi|24379659|ref|NP_721614.1| tRNA modification GTPase TrmE [Streptococcus mutans UA159] gi|290580346|ref|YP_003484738.1| putative thiophene and furan degradation protein [Streptococcus mutans NN2025] gi|32171828|sp|Q8DTT8|MNME_STRMU RecName: Full=tRNA modification GTPase mnmE gi|24377614|gb|AAN58920.1|AE014960_1 putative thiophene and furan degradation protein [Streptococcus mutans UA159] gi|254997245|dbj|BAH87846.1| putative thiophene and furan degradation protein [Streptococcus mutans NN2025] Length = 455 Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 38/129 (29%), Positives = 72/129 (55%), Gaps = 5/129 (3%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L A++GRPNVGKS+L+N LL + + G TRD + N K P+++ D Sbjct: 216 KILREGLSTAIIGRPNVGKSSLLNNLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLID 275 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ + E + V++S +++ + +++L++ QD +++ N+ + Sbjct: 276 TAGIRETDDLVEKI---GVERSKKALEEADLVLLVLNSAEKLTDQDRTLLEISQNSNRLI 332 Query: 318 VLALNKWDM 326 + LNK D+ Sbjct: 333 L--LNKTDL 339 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 40/117 (34%), Positives = 68/117 (58%), Gaps = 3/117 (2%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AI+G PNVGKS+L N L++++ A+V + G TRD + I GV ++DTAGI + + Sbjct: 225 AIIGRPNVGKSSLLNNLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDD 284 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + K ++++ A+ EA L+L +++S +T D + + N I++ NK D Sbjct: 285 L-VEKIGVERSKKALEEADLVLLVLNSAEKLTDQDRTLLEISQNSNRLILL--NKTD 338 >gi|116617891|ref|YP_818262.1| GTPase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|122271908|sp|Q03Y33|ERA_LEUMM RecName: Full=GTPase Era gi|116096738|gb|ABJ61889.1| GTPase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 303 Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 41/119 (34%), Positives = 67/119 (56%), Gaps = 2/119 (1%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKSTL NR+V +K+A++ + TR+++ G + +DT G+ + Sbjct: 11 VAIIGRPNVGKSTLLNRIVGEKIAIMSDKAQTTRNKIQGIYTTDDAQVVFIDTPGVHKPQ 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRK-KNIPIIIVSNKMD 122 N S+ M A++EA I F++D+ D I L++ KN PI ++ NK+D Sbjct: 71 N-SLGDFMVKSAFSALHEADAIWFVVDASMARGRGDDFIIDRLQEVKNTPIYLLINKVD 128 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 45/170 (26%), Positives = 88/170 (51%), Gaps = 12/170 (7%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKSTL+NR++G + ++ TR+ + + + + DT G+ KP Sbjct: 11 VAIIGRPNVGKSTLLNRIVGEKIAIMSDKAQTTRNKIQGIYTTDDAQVVFIDTPGVHKPQ 70 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVD---SVFNTGHAVVLALN 322 SL VK + ++ + ++DA++ + D I+D V NT + L +N Sbjct: 71 N---SLGDFMVKSAFSALHEADAIWFVVDASMARGRGDDFIIDRLQEVKNT--PIYLLIN 125 Query: 323 KWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVL 372 K D+++ N L D+ + P+ +++ IS G+ + +L+ +++ Sbjct: 126 KVDLLAP--NDLLDVIASYQNDAPEWAEVF--PISATEGDNVPELLDNIV 171 >gi|329118565|ref|ZP_08247269.1| tRNA modification GTPase TrmE [Neisseria bacilliformis ATCC BAA-1200] gi|327465300|gb|EGF11581.1| tRNA modification GTPase TrmE [Neisseria bacilliformis ATCC BAA-1200] Length = 454 Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 44/129 (34%), Positives = 70/129 (54%), Gaps = 2/129 (1%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + +VGAPNVGKS+L N L +A+V + G TRD + Q ++GV +I DTAG+ D Sbjct: 220 VVLVGAPNVGKSSLLNALAGDDIAIVTDIAGTTRDTVREQITLDGVPVHITDTAGLRDTD 279 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + ++ K +++ A+ +A + L LID G+ I + L N+ I V NK+D Sbjct: 280 D-TVEKIGIERSGKALAQADVALILIDPAEGLNQKTRDILAAL-PGNLKKIEVHNKIDLS 337 Query: 125 IAQRNFYEI 133 F ++ Sbjct: 338 GGTPEFSDV 346 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/188 (23%), Positives = 90/188 (47%), Gaps = 22/188 (11%) Query: 114 IIIVSNKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLE 173 +I S++ R+A R+ +S +V+ DL + ++ + + P E Sbjct: 133 LIDASSQSAARMAVRSLKGAFSQHIHALVD-----DL-------ITLRMLVEATLDFPEE 180 Query: 174 MIENNKRNEESPK-ENITSEGKSSVKN------ISKPLRIAVVGRPNVGKSTLINRLLGY 226 I+ + + K EN+ K+ + + + + + +VG PNVGKS+L+N L G Sbjct: 181 DIDFLEEADARGKLENLQGRLKAVLAQAQQGAVLREGMNVVLVGAPNVGKSSLLNALAGD 240 Query: 227 NRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTC 286 + + +G TRD+V P+ I DTAG+R +++E+ +++S +++ Sbjct: 241 DIAIVTDIAGTTRDTVREQITLDGVPVHITDTAGLRDTD---DTVEKIGIERSGKALAQA 297 Query: 287 ETTIVLLD 294 + ++L+D Sbjct: 298 DVALILID 305 >gi|30468066|ref|NP_848953.1| tRNA modification GTPase [Cyanidioschyzon merolae strain 10D] gi|75272287|sp|Q85FG3|MNME_CYAME RecName: Full=Probable tRNA modification GTPase mnmE gi|30409166|dbj|BAC76115.1| tRNA modification GTPase [Cyanidioschyzon merolae strain 10D] Length = 446 Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 32/95 (33%), Positives = 53/95 (55%), Gaps = 3/95 (3%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 +++A++G N GKSTL N L+G R + +G T D V + W+ FDTAG+++ Sbjct: 219 IQVALLGPANAGKSTLFNALIGEERSIVTPIAGTTTDVVEATLQWQQICFRFFDTAGLKE 278 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 S +E K + K+ Q + C+ + ++DAT P Sbjct: 279 AS---SEIETKAMAKAQQIAKQCDLILWIIDATSP 310 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 62/121 (51%), Gaps = 12/121 (9%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A++G N GKSTLFN L+ ++ ++V G T D + + F DTAG+ + Sbjct: 221 VALLGPANAGKSTLFNALIGEERSIVTPIAGTTTDVVEATLQWQQICFRFFDTAGLKEAS 280 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKA---GITPYDHAITSFLRKKNIPIIIVSNKM 121 + K M ++A + LIL++ID+ + I PY L K P+++V NK+ Sbjct: 281 SEIETKAMAKAQQIA-KQCDLILWIIDATSPNLPIPPY------LLNSK--PLLVVYNKI 331 Query: 122 D 122 D Sbjct: 332 D 332 >gi|268315826|ref|YP_003289545.1| GTP-binding protein Era [Rhodothermus marinus DSM 4252] gi|262333360|gb|ACY47157.1| GTP-binding protein Era [Rhodothermus marinus DSM 4252] Length = 311 Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 53/154 (34%), Positives = 77/154 (50%), Gaps = 23/154 (14%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIV--DTAGIAD 62 +AIVG PNVGKSTL N L+ K+++V P TR R+ G I++G + IV DT G+ Sbjct: 28 VAIVGKPNVGKSTLMNALLGHKLSIVTPKPQTTRHRVLG--ILSGDTYQIVFLDTPGVLK 85 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDS--KAGITPYDHAITSFLRKKNIPIIIVSNK 120 + + M + A+ +A L+LF+ ++ KA T S N P I+ NK Sbjct: 86 KARYKLHEHMLRTVDRAVADADLVLFMAEATQKAPDT------ISLGHLGNRPAILALNK 139 Query: 121 MDTRIAQRNFYEIYSL--------DFKEIVEISA 146 MD RN ++ L F+ +V ISA Sbjct: 140 MDL---VRNQEQVLPLVDAYMKQYPFEAVVPISA 170 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/171 (28%), Positives = 80/171 (46%), Gaps = 18/171 (10%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VG+PNVGKSTL+N LLG+ + + TR V + + I DT G+ K + Sbjct: 28 VAIVGKPNVGKSTLMNALLGHKLSIVTPKPQTTRHRVLGILSGDTYQIVFLDTPGVLKKA 87 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGH----AVVLAL 321 R L + ++ ++V + + + +AT + + GH +LAL Sbjct: 88 RY--KLHEHMLRTVDRAVADADLVLFMAEAT--------QKAPDTISLGHLGNRPAILAL 137 Query: 322 NKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVL 372 NK D+V ++ +L L +K P + IS TG LD L+ ++ Sbjct: 138 NKMDLVRNQEQVL-PLVDAYMKQYPFEA---VVPISALTGYNLDVLLKEII 184 >gi|71277760|ref|YP_271687.1| tRNA modification GTPase TrmE [Colwellia psychrerythraea 34H] gi|123630481|sp|Q47U36|MNME_COLP3 RecName: Full=tRNA modification GTPase mnmE gi|71143500|gb|AAZ23973.1| tRNA modification GTPase TrmE [Colwellia psychrerythraea 34H] Length = 471 Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 50/161 (31%), Positives = 79/161 (49%), Gaps = 11/161 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + I G PN GKS+L N L K+ A+V + G TRD L Q I+G+ +I+DTAG+ D Sbjct: 226 VVIAGRPNAGKSSLLNALSGKQTAIVTDIAGTTRDVLAEQIHIDGMPLHIIDTAGLRDSD 285 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKA--GITPYDHAITSFLRK------KNIPIII 116 + + K ++ IN+A +L ++D+ I D I F + + I + + Sbjct: 286 DV-VEKIGIERAWQEINQADRVLLMVDASEDHSILEDDQDIKDFYPEFFAKLPEKIGLTL 344 Query: 117 VSNKMDTRIAQRNFYEIYSLDFKE--IVEISAEHDLGTSEL 155 + NK D A+ F E D + I+ +SA+ G L Sbjct: 345 IRNKADVNDAKTGFTEFTDTDGTQHAIITLSAKTGKGVDSL 385 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 46/176 (26%), Positives = 84/176 (47%), Gaps = 18/176 (10%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 I + +R+ + GRPN GKS+L+N L G + +G TRD ++ + P+ I DTA Sbjct: 220 IREGMRVVIAGRPNAGKSSLLNALSGKQTAIVTDIAGTTRDVLAEQIHIDGMPLHIIDTA 279 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDA----TIPFEKQDLRIVDSVFNTGH 315 G+R + E + ++++ Q + + ++++DA +I + QD++ F Sbjct: 280 GLRDSDDVVEKI---GIERAWQEINQADRVLLMVDASEDHSILEDDQDIKDFYPEFFAKL 336 Query: 316 ----AVVLALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDL 367 + L NK D+ K + T ++ I T+S +TG+G+D L Sbjct: 337 PEKIGLTLIRNKADVNDAKTGFTEFTDTDGTQH-------AIITLSAKTGKGVDSL 385 >gi|328950083|ref|YP_004367418.1| GTP-binding protein Era-like-protein [Marinithermus hydrothermalis DSM 14884] gi|328450407|gb|AEB11308.1| GTP-binding protein Era-like-protein [Marinithermus hydrothermalis DSM 14884] Length = 299 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 52/188 (27%), Positives = 88/188 (46%), Gaps = 10/188 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N ++ K+A + P TR + G VDT G+ Sbjct: 11 VAIVGKPNVGKSTLLNTMLGVKVAPITPKPQTTRKTVRGIYTEGNRQIVFVDTPGLHKPA 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRK--KNIPIIIVSNKMD 122 + ++ + +N+Q A+ + +LIL+L+D + T D + L +PI++V NK+D Sbjct: 71 D-ALGEYINEQVYEALADVNLILWLVDLRHPPTDEDRLVARALEPLVGRVPILLVGNKVD 129 Query: 123 TRIAQRNFYEIYSLDFKEIVEI---SAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNK 179 E Y +I E+ SA + + L + I + P P + Sbjct: 130 AAKYPDEALEAYRALLPQIEEVRTLSALDERDVANLRAEILALL----PEGPFFYPDTFT 185 Query: 180 RNEESPKE 187 R+++ P++ Sbjct: 186 RSDQPPEQ 193 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 48/170 (28%), Positives = 77/170 (45%), Gaps = 18/170 (10%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VG+PNVGKSTL+N +LG + TR +V + N I DT G+ KP+ Sbjct: 11 VAIVGKPNVGKSTLLNTMLGVKVAPITPKPQTTRKTVRGIYTEGNRQIVFVDTPGLHKPA 70 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFN--TGHA-VVLALN 322 ++L + ++ +++ + L+D P +D R+V G ++L N Sbjct: 71 ---DALGEYINEQVYEALADVNLILWLVDLRHPPTDED-RLVARALEPLVGRVPILLVGN 126 Query: 323 KWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVL 372 K D L+ R LPQI ++ RT LD+ V+ L Sbjct: 127 KVDAAKYPDEALEAYRAL----LPQIEEV-------RTLSALDERDVANL 165 >gi|313679829|ref|YP_004057568.1| tRNA modification GTPase trme [Oceanithermus profundus DSM 14977] gi|313152544|gb|ADR36395.1| tRNA modification GTPase trmE [Oceanithermus profundus DSM 14977] Length = 436 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 33/101 (32%), Positives = 57/101 (56%), Gaps = 3/101 (2%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 + + + R+A+VG PN GKS+L+N LLG+ R L + G TRD + + + P+ D Sbjct: 214 RRVREGARLALVGAPNAGKSSLLNALLGFERALVHDRPGTTRDYLEAALEIEGVPLVAVD 273 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIP 298 TAG+R R + +E V++++ R + + L+D + P Sbjct: 274 TAGLR---RTDDPVEAAGVERALAVAREADLILYLVDRSRP 311 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 37/87 (42%), Positives = 50/87 (57%), Gaps = 1/87 (1%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VGAPN GKS+L N L+ + A+V + PG TRD L I GV VDTAG+ Sbjct: 222 LALVGAPNAGKSSLLNALLGFERALVHDRPGTTRDYLEAALEIEGVPLVAVDTAGLRRTD 281 Query: 65 NCSIAKQMNDQTELAINEAHLILFLID 91 + A + +A EA LIL+L+D Sbjct: 282 DPVEAAGVERALAVA-READLILYLVD 307 >gi|282934246|ref|ZP_06339523.1| tRNA modification GTPase TrmE [Lactobacillus jensenii 208-1] gi|281301720|gb|EFA93987.1| tRNA modification GTPase TrmE [Lactobacillus jensenii 208-1] Length = 332 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 38/105 (36%), Positives = 60/105 (57%), Gaps = 1/105 (0%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 AIVG PNVGKS+L N L + A+V + G TRD L I GV ++DTAGI ++ Sbjct: 227 AIVGRPNVGKSSLLNYLTQDDKAIVTDVAGTTRDTLEEYVSIRGVPLKLIDTAGIHHTED 286 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKK 110 + K ++++ AI +A L+L L+++ +T D + + + K Sbjct: 287 -KVEKIGVERSKKAIEQADLVLLLLNASEALTTEDEKLIDYTKNK 330 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/150 (27%), Positives = 80/150 (53%), Gaps = 7/150 (4%) Query: 167 YPNHPLEMIENNKRNEESPK--ENITSEGKSS--VKNISKPLRIAVVGRPNVGKSTLINR 222 YP + + + + E S K E I K++ K + L A+VGRPNVGKS+L+N Sbjct: 183 YPEYDADQVTATQMQETSKKVIEAINRLLKTANQGKIMRNGLATAIVGRPNVGKSSLLNY 242 Query: 223 LLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQS 282 L ++ + +G TRD++ + + P+++ DTAG+ + +E+ V++S ++ Sbjct: 243 LTQDDKAIVTDVAGTTRDTLEEYVSIRGVPLKLIDTAGIHHTE---DKVEKIGVERSKKA 299 Query: 283 VRTCETTIVLLDATIPFEKQDLRIVDSVFN 312 + + ++LL+A+ +D +++D N Sbjct: 300 IEQADLVLLLLNASEALTTEDEKLIDYTKN 329 >gi|266620968|ref|ZP_06113903.1| tRNA modification GTPase TrmE [Clostridium hathewayi DSM 13479] gi|288867390|gb|EFC99688.1| tRNA modification GTPase TrmE [Clostridium hathewayi DSM 13479] Length = 459 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 35/127 (27%), Positives = 69/127 (54%), Gaps = 5/127 (3%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 +++ ++ ++G+PN GKS+L+N L+G R + +G TRD++ + ++ + + DTA Sbjct: 219 MTEGIKTVILGKPNAGKSSLLNVLVGEERAIVTDVAGTTRDTLEETIRLEDITLNVIDTA 278 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R I E + V+K+ + + I ++D + P ++ D I+ F V+ Sbjct: 279 GIRDTDDIVEKI---GVEKARNAADAADLIIYVVDGSCPLDENDEEILK--FIKDRKAVV 333 Query: 320 ALNKWDM 326 LNK D+ Sbjct: 334 LLNKSDL 340 Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 50/194 (25%), Positives = 92/194 (47%), Gaps = 22/194 (11%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 I+G PN GKS+L N LV ++ A+V + G TRD L + + N++DTAGI D + Sbjct: 227 ILGKPNAGKSSLLNVLVGEERAIVTDVAGTTRDTLEETIRLEDITLNVIDTAGIRDTDDI 286 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLR---------KKNIPIIIV 117 + K ++ A + A LI++++D + D I F++ K ++ + I Sbjct: 287 -VEKIGVEKARNAADAADLIIYVVDGSCPLDENDEEILKFIKDRKAVVLLNKSDLTMEIT 345 Query: 118 SNKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 ++ + +R A R ++ ISA+ +G L I +F + E+ Sbjct: 346 ADMLASRTAHR------------VIAISAKERVGIELLEDEIKTMFYHGEIDFNDEVTIT 393 Query: 178 NKRNEESPKENITS 191 N R++ + ++ +S Sbjct: 394 NVRHKNALEQAYSS 407 >gi|260428910|ref|ZP_05782887.1| tRNA modification GTPase TrmE [Citreicella sp. SE45] gi|260419533|gb|EEX12786.1| tRNA modification GTPase TrmE [Citreicella sp. SE45] Length = 427 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 31/102 (30%), Positives = 57/102 (55%), Gaps = 3/102 (2%) Query: 193 GKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHP 252 G + + I +A+VG PNVGKS+L+N L G + +T +G TRD + + P Sbjct: 203 GLDAAERIRSGFEVAIVGAPNVGKSSLLNALSGRDAAITSEIAGTTRDVIEVRMEIAGLP 262 Query: 253 IEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLD 294 + + DTAG+R+ + +E+ + +++ RT + ++L+D Sbjct: 263 VTLLDTAGLRETQ---DPVEKIGIARALDRARTSDLRVILVD 301 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 36/58 (62%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 + +AIVGAPNVGKS+L N L + A+ G TRD + + I G+ ++DTAG+ Sbjct: 214 FEVAIVGAPNVGKSSLLNALSGRDAAITSEIAGTTRDVIEVRMEIAGLPVTLLDTAGL 271 >gi|227432225|ref|ZP_03914221.1| GTP-binding protein Era [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227351998|gb|EEJ42228.1| GTP-binding protein Era [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 303 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 41/119 (34%), Positives = 67/119 (56%), Gaps = 2/119 (1%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKSTL NR+V +K+A++ + TR+++ G + +DT G+ + Sbjct: 11 VAIIGRPNVGKSTLLNRIVGEKIAIMSDKAQTTRNKIQGIYTTDDAQVVFIDTPGVHKPQ 70 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRK-KNIPIIIVSNKMD 122 N S+ M A++EA I F++D+ D I L++ KN PI ++ NK+D Sbjct: 71 N-SLGDFMVKSAFSALHEADAIWFVVDAAMARGRGDDFIIDRLQEVKNTPIYLLINKVD 128 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 40/141 (28%), Positives = 73/141 (51%), Gaps = 10/141 (7%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKSTL+NR++G + ++ TR+ + + + + DT G+ KP Sbjct: 11 VAIIGRPNVGKSTLLNRIVGEKIAIMSDKAQTTRNKIQGIYTTDDAQVVFIDTPGVHKPQ 70 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVD---SVFNTGHAVVLALN 322 SL VK + ++ + ++DA + + D I+D V NT + L +N Sbjct: 71 N---SLGDFMVKSAFSALHEADAIWFVVDAAMARGRGDDFIIDRLQEVKNT--PIYLLIN 125 Query: 323 KWDMVS--DKLNLLQDLRTKA 341 K D+++ D L+++ + A Sbjct: 126 KVDLLAPNDLLDVIASYQNDA 146 >gi|194397601|ref|YP_002037604.1| GTP-binding protein Era [Streptococcus pneumoniae G54] gi|226741240|sp|B5E488|ERA_STRP4 RecName: Full=GTPase Era gi|194357268|gb|ACF55716.1| GTP-binding protein Era homolog [Streptococcus pneumoniae G54] Length = 299 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 47/178 (26%), Positives = 85/178 (47%), Gaps = 5/178 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AI+G PNVGKST N ++ + +A++ + TR+++ G + +DT GI K Sbjct: 8 VAILGRPNVGKSTFLNHVMGQXIAIMXDKAXTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 ++ M + + E +LF++ + D I L+ +P+I+V NK+D Sbjct: 68 -TALGDFMVESAYSTLREVDTVLFMVPADEARGKGDDMIIERLKAAKVPVILVVNKIDKV 126 Query: 125 IAQRNFYEIYS----LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENN 178 + +I +DFKEIV ISA S L ++ + + + P + I ++ Sbjct: 127 HPDQLLSQIDDFRNQMDFKEIVPISALQGNNVSRLVDILSENLDEGFQYFPSDQITDH 184 Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++GRPNVGKST +N ++G + ++ TR+ + + I DT G+ KP Sbjct: 8 VAILGRPNVGKSTFLNHVMGQXIAIMXDKAXTTRNKIMGIYTTDKEQIVFIDTPGIHKPK 67 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +L V+ + ++R +T + ++ A K D I++ + V+L +NK D Sbjct: 68 ---TALGDFMVESAYSTLREVDTVLFMVPADEARGKGDDMIIERLKAAKVPVILVVNKID 124 Query: 326 MV 327 V Sbjct: 125 KV 126 >gi|320159556|ref|YP_004172780.1| GTP-binding protein era [Anaerolinea thermophila UNI-1] gi|319993409|dbj|BAJ62180.1| GTP-binding protein era homolog [Anaerolinea thermophila UNI-1] Length = 308 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 55/182 (30%), Positives = 83/182 (45%), Gaps = 11/182 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A+VG PNVGKSTL NR + +K+A V P TR R G + VDT GI Sbjct: 14 VAVVGRPNVGKSTLMNRFLGQKIAAVSPRPQTTRRRQLGILTLPQAQMVFVDTPGIHKPV 73 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYD----HAITSFLRKKNIPIIIVSNK 120 + + + MN A+ +A ++L+L+D+ T D I L + +++ NK Sbjct: 74 H-KLGEYMNQVALDALRDADVVLWLVDASVKPTDEDRLCAQRILEALGQNPANVLLALNK 132 Query: 121 M-----DTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 M D R + Y+ L +V ISA GT +L I + + P + E I Sbjct: 133 MDQVPEDQRAGRLKGYQDL-LSSAWVVWISATSGAGTQDLLDEILRRLPEGPPYYEEEQI 191 Query: 176 EN 177 + Sbjct: 192 TD 193 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 59/196 (30%), Positives = 92/196 (46%), Gaps = 32/196 (16%) Query: 187 ENITSEGKSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISW 246 E I +E KS +AVVGRPNVGKSTL+NR LG + TR Sbjct: 3 EQIPAEFKSGF--------VAVVGRPNVGKSTLMNRFLGQKIAAVSPRPQTTRRRQLGIL 54 Query: 247 NWKNHPIEIFDTAGMRKP-SRITESLEQKTVKKSMQSVRTCETTIVLLDATI-PFEKQDL 304 + DT G+ KP ++ E + Q ++ ++R + + L+DA++ P ++ L Sbjct: 55 TLPQAQMVFVDTPGIHKPVHKLGEYMNQ----VALDALRDADVVLWLVDASVKPTDEDRL 110 Query: 305 ---RIVDSVFNTGHAVVLALNKWDMVSD-----KLNLLQDLRTKAIKNLPQIGDIYINTI 356 RI++++ V+LALNK D V + +L QDL + A ++ I Sbjct: 111 CAQRILEALGQNPANVLLALNKMDQVPEDQRAGRLKGYQDLLSSA----------WVVWI 160 Query: 357 SGRTGEGLDDLMVSVL 372 S +G G DL+ +L Sbjct: 161 SATSGAGTQDLLDEIL 176 >gi|309775528|ref|ZP_07670528.1| GTP-binding protein Era [Erysipelotrichaceae bacterium 3_1_53] gi|308916622|gb|EFP62362.1| GTP-binding protein Era [Erysipelotrichaceae bacterium 3_1_53] Length = 299 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 48/181 (26%), Positives = 84/181 (46%), Gaps = 5/181 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 I+I+G PN GKSTL N ++++K+A+ P TR+ + G F VDT GI K Sbjct: 8 ISIIGRPNAGKSTLLNAILQEKVAITTPKPQTTRNNISGILTREDAQFVFVDTPGIHKPK 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + + +N AI EA + +++D+ D I ++ +IP+ ++ NK+D Sbjct: 68 H-ELGRTLNRNAYTAIAEADVNYWMVDATQPFGSGDEFILEKMKGAHIPVFLILNKIDLL 126 Query: 125 IAQRNFYEIYS----LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKR 180 + + + F EI +SA L V + ++ P +MI ++ Sbjct: 127 DKEAVLTTLTKWQSRMQFAEIFPVSALKRENVEHLLEVTKQYLQEGVKYFPDDMISDHGE 186 Query: 181 N 181 N Sbjct: 187 N 187 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 39/132 (29%), Positives = 66/132 (50%), Gaps = 4/132 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 I+++GRPN GKSTL+N +L +T + TR+++S ++ DT G+ KP Sbjct: 8 ISIIGRPNAGKSTLLNAILQEKVAITTPKPQTTRNNISGILTREDAQFVFVDTPGIHKPK 67 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + + + ++ + ++DAT PF D I++ + V L LNK D Sbjct: 68 H---ELGRTLNRNAYTAIAEADVNYWMVDATQPFGSGDEFILEKMKGAHIPVFLILNKID 124 Query: 326 MVSDKLNLLQDL 337 ++ DK +L L Sbjct: 125 LL-DKEAVLTTL 135 >gi|1902827|dbj|BAA19450.1| ORF4 [Leptospira interrogans] gi|2780770|dbj|BAA24373.1| ORF4; putative [Leptospira interrogans] Length = 435 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 48/182 (26%), Positives = 94/182 (51%), Gaps = 20/182 (10%) Query: 195 SSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIE 254 SS + + + RI + G PN GKS+L+N LLG R + G TRD +S + P+ Sbjct: 191 SSAEKLIQQFRIVLYGEPNTGKSSLMNVLLGKERSIISEIPGTTRDYISEEIFLEGIPVR 250 Query: 255 IFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLR-IVDSVFNT 313 + DTAG+R+ T+ +E+ +++S + ++ + + L+D + +K++ + ++ Sbjct: 251 LVDTAGVRET---TDHIEKLGIERSEKEFQSADVRLFLVDVS---KKENWKEFINKSRER 304 Query: 314 GHAVVLALNKWDMVSDKL--NLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSV 371 +L NK D+++ NL D++ D+ + IS +T EG+ +L+ ++ Sbjct: 305 LEGSILIANKIDILNSSWDRNLFSDVK-----------DLIVLEISCKTKEGISNLLDAI 353 Query: 372 LE 373 E Sbjct: 354 KE 355 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 51/89 (57%), Gaps = 1/89 (1%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + I + G PN GKS+L N L+ K+ +++ PG TRD + + + G+ +VDTAG+ + Sbjct: 200 FRIVLYGEPNTGKSSLMNVLLGKERSIISEIPGTTRDYISEEIFLEGIPVRLVDTAGVRE 259 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLID 91 + I K +++E A + LFL+D Sbjct: 260 TTD-HIEKLGIERSEKEFQSADVRLFLVD 287 >gi|205829219|sp|B1GYZ9|MNME_UNCTG RecName: Full=tRNA modification GTPase mnmE Length = 456 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 51/185 (27%), Positives = 94/185 (50%), Gaps = 25/185 (13%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 +++ ++G+PN GKS+L+N +LG NR + +G T D+V + + P+ I DTAG+R+ Sbjct: 218 IKVVIIGKPNAGKSSLLNAILGKNRAIVTDIAGTTTDTVEETIDCCGIPLIITDTAGIRE 277 Query: 264 PSR-ITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGH--AVVLA 320 S + E L Q K+ ++V + I L D++ + D +I D + + ++ Sbjct: 278 HSENLIEILGQ---AKTREAVCKADILIWLFDSSSEPDCNDAKIADFLKKSDLNIPIICV 334 Query: 321 LNKWDM----VSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 LNK D+ S LN ++ K IS +TG G+ DL+ +++I Sbjct: 335 LNKSDLPPLFSSSLLNRENKVKVK---------------ISAKTGVGIADLLDEIVKIAG 379 Query: 377 LWKTR 381 + +++ Sbjct: 380 VSESK 384 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 53/160 (33%), Positives = 81/160 (50%), Gaps = 4/160 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + I+G PN GKS+L N ++ K A+V + G T D + G+ I DTAGI + Sbjct: 220 VVIIGKPNAGKSSLLNAILGKNRAIVTDIAGTTTDTVEETIDCCGIPLIITDTAGIREHS 279 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKK--NIPIIIVSNKMD 122 I +T A+ +A ++++L DS + D I FL+K NIPII V NK D Sbjct: 280 ENLIEILGQAKTREAVCKADILIWLFDSSSEPDCNDAKIADFLKKSDLNIPIICVLNKSD 339 Query: 123 TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKI 162 + + + + K V+ISA+ +G ++L I KI Sbjct: 340 --LPPLFSSSLLNRENKVKVKISAKTGVGIADLLDEIVKI 377 >gi|170744646|ref|YP_001773301.1| GTP-binding protein Era [Methylobacterium sp. 4-46] gi|168198920|gb|ACA20867.1| GTP-binding protein Era [Methylobacterium sp. 4-46] Length = 315 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 53/184 (28%), Positives = 83/184 (45%), Gaps = 15/184 (8%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A++G PN GKSTL N LV K+++V TR + G AI VDT GI K Sbjct: 25 VALIGVPNAGKSTLLNSLVGSKVSIVSRKVQTTRALVRGIAIEGAAQIVFVDTPGIFAPK 84 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + + M +A + L+D++ G+ P A+ L + P I+V NK+D Sbjct: 85 R-RLDRAMVTSAWSGAADADAVCLLVDARKGVDPEVEAVLGRLPELRRPKILVLNKIDV- 142 Query: 125 IAQRNFYEIYS-----LDFKEIVEISAEHDLGTSELHSVIFKIFKQK---YP-----NHP 171 IA+ ++ + L F +SA G ++L V+ + YP + P Sbjct: 143 IARERLLDLAAALNGRLPFDHTFMVSALTGDGVADLRRVLAGLMPPGPWLYPEDQVSDAP 202 Query: 172 LEMI 175 L M+ Sbjct: 203 LRML 206 Score = 41.6 bits (96), Expect = 0.31, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 72/164 (43%), Gaps = 12/164 (7%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++G PN GKSTL+N L+G + + TR V I DT G+ P Sbjct: 25 VALIGVPNAGKSTLLNSLVGSKVSIVSRKVQTTRALVRGIAIEGAAQIVFVDTPGIFAPK 84 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 R L++ V + + +L+DA + + ++ + +L LNK D Sbjct: 85 R---RLDRAMVTSAWSGAADADAVCLLVDARKGVDPEVEAVLGRLPELRRPKILVLNKID 141 Query: 326 MVSDKLNLLQDLRTKAIKNLPQIGDIYINT--ISGRTGEGLDDL 367 +++ + L DL LP + +T +S TG+G+ DL Sbjct: 142 VIARE--RLLDLAAALNGRLP-----FDHTFMVSALTGDGVADL 178 >gi|310642491|ref|YP_003947249.1| gtpase with domain [Paenibacillus polymyxa SC2] gi|309247441|gb|ADO57008.1| Predicted GTPase with uncharacterized domain [Paenibacillus polymyxa SC2] Length = 417 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 43/121 (35%), Positives = 66/121 (54%), Gaps = 5/121 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYG--QAIINGVIFNIVDTAGIAD 62 I ++G N GKS++ N L + AVV G T D ++ + + G I +VDTAG+ D Sbjct: 14 IVLLGRRNAGKSSILNTLTGQPAAVVSPIGGTTTDPVFKPMELLPAGPIV-LVDTAGLDD 72 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 I + ++T +N L L +ID+ G+ P++H + LR K IP+I V NK+D Sbjct: 73 --EGEIGELRRNKTLEILNSTDLALLVIDATVGVGPFEHELLEKLRTKKIPVIGVLNKID 130 Query: 123 T 123 T Sbjct: 131 T 131 Score = 43.1 bits (100), Expect = 0.091, Method: Compositional matrix adjust. Identities = 35/128 (27%), Positives = 62/128 (48%), Gaps = 11/128 (8%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWN-WKNHPIEIFDTAGMRKP 264 I ++GR N GKS+++N L G + G T D V PI + DTAG+ Sbjct: 14 IVLLGRRNAGKSSILNTLTGQPAAVVSPIGGTTTDPVFKPMELLPAGPIVLVDTAGLDDE 73 Query: 265 SRITESLEQKTVKKSMQSVRTCETTIVLLDATI---PFEKQDLRIVDSVFNTGHAVVLAL 321 I E KT ++ + + + ++++DAT+ PFE + +++ + V+ L Sbjct: 74 GEIGELRRNKT----LEILNSTDLALLVIDATVGVGPFEHE---LLEKLRTKKIPVIGVL 126 Query: 322 NKWDMVSD 329 NK D +++ Sbjct: 127 NKIDTLAE 134 >gi|71909809|ref|YP_287396.1| tRNA modification GTPase TrmE [Dechloromonas aromatica RCB] gi|123626188|sp|Q477Q5|MNME_DECAR RecName: Full=tRNA modification GTPase mnmE gi|71849430|gb|AAZ48926.1| tRNA modification GTPase trmE [Dechloromonas aromatica RCB] Length = 448 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 42/127 (33%), Positives = 71/127 (55%), Gaps = 4/127 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + + G PNVGKS+L NRL +A+V G TRD L I G+ +I+DTAG+ + Sbjct: 217 VVLAGQPNVGKSSLLNRLAGDDLAIVTPIAGTTRDALRSTIQIEGIPLHIIDTAGLRETD 276 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 + + K +++ I + ++L L+D++ G++ D I + L + + I V NK+D Sbjct: 277 D-EVEKIGIERSWKEIERSDVVLLLVDARTGVSESDREILARLPDR-LQRITVYNKIDLT 334 Query: 124 -RIAQRN 129 R A+R+ Sbjct: 335 HRAAERH 341 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 32/110 (29%), Positives = 62/110 (56%), Gaps = 3/110 (2%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + L + + G+PNVGKS+L+NRL G + + +G TRD++ + + P+ I D Sbjct: 209 KLLQSGLHVVLAGQPNVGKSSLLNRLAGDDLAIVTPIAGTTRDALRSTIQIEGIPLHIID 268 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIV 307 TAG+R+ + +E+ +++S + + + ++L+DA + D I+ Sbjct: 269 TAGLRETD---DEVEKIGIERSWKEIERSDVVLLLVDARTGVSESDREIL 315 >gi|295707338|ref|YP_003600413.1| tRNA modification GTPase TrmE [Bacillus megaterium DSM 319] gi|294804997|gb|ADF42063.1| tRNA modification GTPase TrmE [Bacillus megaterium DSM 319] Length = 462 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 50/159 (31%), Positives = 82/159 (51%), Gaps = 7/159 (4%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 I+G PNVGKS+L N LV+ A+V + PG TRD + + GV +VDTAGI + ++ Sbjct: 229 IIGRPNVGKSSLLNSLVQDAKAIVTDIPGTTRDVIEEYVNVRGVPLRLVDTAGIRETEDI 288 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 + + +++ + EA LIL +++ +T D + F K + +I++ NK D + Sbjct: 289 -VERIGVERSRQYLKEADLILLVLNFNEELTDEDKKL--FEAVKGMDVIVIVNKTD--LE 343 Query: 127 QR-NFYEIYSLDFKE-IVEISAEHDLGTSELHSVIFKIF 163 Q+ N E+ IV S + G +L I +F Sbjct: 344 QKINLEEVQQFAGDHPIVTTSLLQEQGVDQLEEAIAALF 382 Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 40/136 (29%), Positives = 75/136 (55%), Gaps = 6/136 (4%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L ++GRPNVGKS+L+N L+ + + G TRD + N + P+ + D Sbjct: 219 KILREGLATVIIGRPNVGKSSLLNSLVQDAKAIVTDIPGTTRDVIEEYVNVRGVPLRLVD 278 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R+ I E + V++S Q ++ + +++L+ +D ++ ++V G V Sbjct: 279 TAGIRETEDIVERI---GVERSRQYLKEADLILLVLNFNEELTDEDKKLFEAV--KGMDV 333 Query: 318 VLALNKWDMVSDKLNL 333 ++ +NK D+ K+NL Sbjct: 334 IVIVNKTDL-EQKINL 348 >gi|225430700|ref|XP_002264259.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 435 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 86/165 (52%), Gaps = 12/165 (7%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIV--DTAGIAD 62 +A++G PNVGKSTL N+++ +K+++V + P TR R+ G I +G + ++ DT G+ + Sbjct: 140 VAVLGKPNVGKSTLANQMIGQKLSIVTDKPQTTRHRILG--ICSGPEYQMILYDTPGVIE 197 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLR--KKNIPIIIVSNK 120 K + M A A ++ L+D+ D + + K +P ++V NK Sbjct: 198 KKMHKLDSMMMKNVRSATINADCVVVLVDACKEPQKIDEVLEEGVGNLKDKLPTLLVLNK 257 Query: 121 MDT----RIAQR-NFYEIYSLDFKEIVEISAEHDLGTSELHSVIF 160 D IA++ +YE + +D E++ +SA++ G ++ I Sbjct: 258 KDLIKPGEIAKKLEWYEKF-IDVDEVIPVSAKYGQGVDDVKDWIL 301 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 43/169 (25%), Positives = 81/169 (47%), Gaps = 19/169 (11%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +AV+G+PNVGKSTL N+++G + + TR + + + + ++DT G Sbjct: 140 VAVLGKPNVGKSTLANQMIGQKLSIVTDKPQTTRHRILGICSGPEYQMILYDTPG----- 194 Query: 266 RITESLEQKTVKKSMQSVRT----CETTIVLLDATIPFEKQDLRIVDSVFNTGHAV--VL 319 + E K M++VR+ + +VL+DA +K D + + V N + +L Sbjct: 195 -VIEKKMHKLDSMMMKNVRSATINADCVVVLVDACKEPQKIDEVLEEGVGNLKDKLPTLL 253 Query: 320 ALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDI-YINTISGRTGEGLDDL 367 LNK D++ K ++ + D+ + +S + G+G+DD+ Sbjct: 254 VLNKKDLIK------PGEIAKKLEWYEKFIDVDEVIPVSAKYGQGVDDV 296 >gi|169830197|ref|YP_001700355.1| tRNA modification GTPase trmE [Lysinibacillus sphaericus C3-41] gi|205415777|sp|B1HPM3|MNME_LYSSC RecName: Full=tRNA modification GTPase mnmE gi|168994685|gb|ACA42225.1| Probable tRNA modification GTPase trmE [Lysinibacillus sphaericus C3-41] Length = 461 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 41/139 (29%), Positives = 77/139 (55%), Gaps = 6/139 (4%) Query: 195 SSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIE 254 S K + + L ++GRPNVGKS+L+N L+ N+ + +G TRD + N + P+ Sbjct: 215 SQGKILREGLSTVILGRPNVGKSSLLNSLVQENKAIVTDIAGTTRDIIEEYVNVRGVPLR 274 Query: 255 IFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTG 314 + DTAG+R+ I E + V++S +++R + + +L+ +D R+ +++ Sbjct: 275 LVDTAGIRETEDIVERI---GVERSREALRGADLILFVLNYADELTAEDERLFETIEAMD 331 Query: 315 HAVVLALNKWDMVSDKLNL 333 + V+ +NK D+ K+NL Sbjct: 332 YIVI--INKTDL-PQKINL 347 Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 51/159 (32%), Positives = 84/159 (52%), Gaps = 7/159 (4%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 I+G PNVGKS+L N LV++ A+V + G TRD + + GV +VDTAGI + ++ Sbjct: 228 ILGRPNVGKSSLLNSLVQENKAIVTDIAGTTRDIIEEYVNVRGVPLRLVDTAGIRETEDI 287 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 + + +++ A+ A LILF+++ +T D + F + + I++ NK D + Sbjct: 288 -VERIGVERSREALRGADLILFVLNYADELTAEDERL--FETIEAMDYIVIINKTD--LP 342 Query: 127 QR-NFYEIYSLDFKE-IVEISAEHDLGTSELHSVIFKIF 163 Q+ N + L K IV S + G +EL I +F Sbjct: 343 QKINLARVKELAGKHRIVTTSLLQEEGVTELEEAIAALF 381 >gi|209966078|ref|YP_002298993.1| tRNA modification GTPase TrmE [Rhodospirillum centenum SW] gi|209959544|gb|ACJ00181.1| tRNA modification GTPase TrmE [Rhodospirillum centenum SW] Length = 439 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 33/124 (26%), Positives = 71/124 (57%), Gaps = 9/124 (7%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G PN GKS+L+N + + + +Q+G TRD + ++ + +P+ + DTAG+R+ Sbjct: 218 IAILGAPNAGKSSLLNAIARRDVAIVSAQAGTTRDVIEVALDLGGYPVTLADTAGLRE-- 275 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 +++E + +++++ + T+++ DAT+P + L + G ++ LNK D Sbjct: 276 -TLDAVESEGIRRALDRAARADLTLLVFDATLPPDPATLAL------AGEDALVVLNKAD 328 Query: 326 MVSD 329 + + Sbjct: 329 LAGE 332 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 34/57 (59%) Query: 4 TIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI 60 IAI+GAPN GKS+L N + ++ +A+V G TRD + + G + DTAG+ Sbjct: 217 AIAILGAPNAGKSSLLNAIARRDVAIVSAQAGTTRDVIEVALDLGGYPVTLADTAGL 273 >gi|189485762|ref|YP_001956703.1| tRNA modification GTPase [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287721|dbj|BAG14242.1| tRNA modification GTPase [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 471 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 51/185 (27%), Positives = 94/185 (50%), Gaps = 25/185 (13%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 +++ ++G+PN GKS+L+N +LG NR + +G T D+V + + P+ I DTAG+R+ Sbjct: 233 IKVVIIGKPNAGKSSLLNAILGKNRAIVTDIAGTTTDTVEETIDCCGIPLIITDTAGIRE 292 Query: 264 PSR-ITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGH--AVVLA 320 S + E L Q K+ ++V + I L D++ + D +I D + + ++ Sbjct: 293 HSENLIEILGQ---AKTREAVCKADILIWLFDSSSEPDCNDAKIADFLKKSDLNIPIICV 349 Query: 321 LNKWDM----VSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINK 376 LNK D+ S LN ++ K IS +TG G+ DL+ +++I Sbjct: 350 LNKSDLPPLFSSSLLNRENKVKVK---------------ISAKTGVGIADLLDEIVKIAG 394 Query: 377 LWKTR 381 + +++ Sbjct: 395 VSESK 399 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 53/160 (33%), Positives = 81/160 (50%), Gaps = 4/160 (2%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + I+G PN GKS+L N ++ K A+V + G T D + G+ I DTAGI + Sbjct: 235 VVIIGKPNAGKSSLLNAILGKNRAIVTDIAGTTTDTVEETIDCCGIPLIITDTAGIREHS 294 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKK--NIPIIIVSNKMD 122 I +T A+ +A ++++L DS + D I FL+K NIPII V NK D Sbjct: 295 ENLIEILGQAKTREAVCKADILIWLFDSSSEPDCNDAKIADFLKKSDLNIPIICVLNKSD 354 Query: 123 TRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKI 162 + + + + K V+ISA+ +G ++L I KI Sbjct: 355 --LPPLFSSSLLNRENKVKVKISAKTGVGIADLLDEIVKI 392 >gi|325577736|ref|ZP_08148011.1| GTP-binding protein Era [Haemophilus parainfluenzae ATCC 33392] gi|325160481|gb|EGC72607.1| GTP-binding protein Era [Haemophilus parainfluenzae ATCC 33392] Length = 304 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 49/177 (27%), Positives = 86/177 (48%), Gaps = 8/177 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNI-VDTAGIADG 63 IAIVG PNVGKSTL N+++ +K+++ TR R+ G G+ I VDT G+ Sbjct: 15 IAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRIVGIK-TEGIYQEIYVDTPGLHIE 73 Query: 64 KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT 123 + +I + MN AI + LI+F++D D + + LR P+++ NK+D Sbjct: 74 EKRAINRLMNRAASSAIGDVDLIIFVVDG-THWNADDEMVLNKLRNAKAPVVLAINKVDN 132 Query: 124 RIAQRNFYEIYS-----LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 + + + +F IV ISA+ +L ++ + ++ + P + + Sbjct: 133 IKNKDDLLPFITDLGSKFNFAHIVPISAQRGNNVHQLEKIVRQSLRKGVHHFPEDYV 189 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 42/131 (32%), Positives = 70/131 (53%), Gaps = 7/131 (5%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIF-DTAGMR-K 263 IA+VGRPNVGKSTL+N++LG +T ++ TR + + + EI+ DT G+ + Sbjct: 15 IAIVGRPNVGKSTLLNKILGQKISITSRKAQTTRHRI-VGIKTEGIYQEIYVDTPGLHIE 73 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 R L + ++ V + I ++D T + D +++ + N VVLA+NK Sbjct: 74 EKRAINRLMNRAASSAIGDV---DLIIFVVDGT-HWNADDEMVLNKLRNAKAPVVLAINK 129 Query: 324 WDMVSDKLNLL 334 D + +K +LL Sbjct: 130 VDNIKNKDDLL 140 >gi|297719757|ref|NP_001172240.1| Os01g0225200 [Oryza sativa Japonica Group] gi|255673015|dbj|BAH90970.1| Os01g0225200 [Oryza sativa Japonica Group] Length = 217 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 36/97 (37%), Positives = 57/97 (58%), Gaps = 3/97 (3%) Query: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPG--ITRDRLYGQAIINGVIFNIVDTA 58 ++ T+ +VG PNVGKS LFNR ++++ A+V N PG +TRD G A + + F ++D+A Sbjct: 92 LLPTVILVGRPNVGKSALFNRFIRRREALVYNTPGDHVTRDIREGVAKLGDLRFRVLDSA 151 Query: 59 GIADGKNC-SIAKQMNDQTELAINEAHLILFLIDSKA 94 G+ SI + D T + + +FLID +A Sbjct: 152 GLETAATSGSILARTADMTGNVLARSQFAIFLIDVRA 188 >gi|126651990|ref|ZP_01724182.1| tRNA modification GTPase [Bacillus sp. B14905] gi|126591259|gb|EAZ85368.1| tRNA modification GTPase [Bacillus sp. B14905] Length = 461 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 41/139 (29%), Positives = 77/139 (55%), Gaps = 6/139 (4%) Query: 195 SSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIE 254 S K + + L ++GRPNVGKS+L+N L+ N+ + +G TRD + N + P+ Sbjct: 215 SQGKILREGLSTVILGRPNVGKSSLLNSLVQENKAIVTDIAGTTRDIIEEYVNVRGVPLR 274 Query: 255 IFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTG 314 + DTAG+R+ I E + V++S +++R + + +L+ +D R+ +++ Sbjct: 275 LVDTAGIRETEDIVERI---GVERSREALRGADLILFVLNYADELTAEDERLFETIEAMD 331 Query: 315 HAVVLALNKWDMVSDKLNL 333 + V+ +NK D+ K+NL Sbjct: 332 YIVI--INKTDL-PQKINL 347 Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 51/159 (32%), Positives = 84/159 (52%), Gaps = 7/159 (4%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 I+G PNVGKS+L N LV++ A+V + G TRD + + GV +VDTAGI + ++ Sbjct: 228 ILGRPNVGKSSLLNSLVQENKAIVTDIAGTTRDIIEEYVNVRGVPLRLVDTAGIRETEDI 287 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 + + +++ A+ A LILF+++ +T D + F + + I++ NK D + Sbjct: 288 -VERIGVERSREALRGADLILFVLNYADELTAEDERL--FETIEAMDYIVIINKTD--LP 342 Query: 127 QR-NFYEIYSLDFKE-IVEISAEHDLGTSELHSVIFKIF 163 Q+ N + L K IV S + G +EL I +F Sbjct: 343 QKINLARVKELAGKHRIVTTSLLQEEGVTELEEAIAALF 381 >gi|282858168|ref|ZP_06267363.1| GTP-binding protein Era [Pyramidobacter piscolens W5455] gi|282584090|gb|EFB89463.1| GTP-binding protein Era [Pyramidobacter piscolens W5455] Length = 303 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 47/182 (25%), Positives = 91/182 (50%), Gaps = 12/182 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNI--VDTAGIAD 62 +A++G PNVGKS+L NR++K K+++V P TRD + G + NG I VDT GI Sbjct: 10 VAVIGRPNVGKSSLLNRILKYKLSIVSAKPQTTRDNILG--LYNGAASQILFVDTPGIHA 67 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFL--IDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 N + +++ ++ + +A+++L++ ID + + D + IP+++ NK Sbjct: 68 PLN-KLGERLVERAVSGLEDANVVLYVVTIDDRPEQSENDRILKVLRDYPGIPVVLAVNK 126 Query: 121 MDTRIAQRNFYEIYS-----LDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMI 175 +D ++ + + ++IV +SA+ L + + P +P +MI Sbjct: 127 VDLPGSRSKILPLIDRFTKKMKLRDIVPVSAKDGTNDEVLVKTLESLLPVAAPLYPDDMI 186 Query: 176 EN 177 + Sbjct: 187 TD 188 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 54/174 (31%), Positives = 92/174 (52%), Gaps = 18/174 (10%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +AV+GRPNVGKS+L+NR+L Y + ++ TRD++ +N I DT G+ P Sbjct: 10 VAVIGRPNVGKSSLLNRILKYKLSIVSAKPQTTRDNILGLYNGAASQILFVDTPGIHAP- 68 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATI---PFEKQDLRIVDSVFN-TGHAVVLAL 321 L ++ V++++ + + +VL TI P + ++ RI+ + + G VVLA+ Sbjct: 69 --LNKLGERLVERAVSGLE--DANVVLYVVTIDDRPEQSENDRILKVLRDYPGIPVVLAV 124 Query: 322 NKWDMVSDKLNLLQ--DLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 NK D+ + +L D TK +K + DI +S + G D+++V LE Sbjct: 125 NKVDLPGSRSKILPLIDRFTKKMK----LRDIV--PVSAKDGTN-DEVLVKTLE 171 >gi|206559399|ref|YP_002230160.1| GTP-binding protein Era [Burkholderia cenocepacia J2315] gi|206561199|ref|YP_002231964.1| GTP-binding protein Era [Burkholderia cenocepacia J2315] gi|198035437|emb|CAR51313.1| GTP-binding protein Era 2 [Burkholderia cenocepacia J2315] gi|198037241|emb|CAR53163.1| GTP-binding protein Era 1 [Burkholderia cenocepacia J2315] Length = 299 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 73/148 (49%), Gaps = 7/148 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N LV +K+++ TR R+ G + F VDT G Sbjct: 14 IAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRITGINTFDDAQFVFVDTPGFQTRH 73 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + ++ + +N + +ILF+I++ P D + + +P ++++NK+D Sbjct: 74 STALNRSLNRAVTSTLTSVDVILFVIEA-GRFGPDDQKVLDLI-PPGMPTLLIANKIDRV 131 Query: 125 IAQRNFYEIYS-----LDFKEIVEISAE 147 + + + +F E+V +SA+ Sbjct: 132 NDKASLFPFMQKVSELREFTELVPLSAQ 159 Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 39/129 (30%), Positives = 68/129 (52%), Gaps = 4/129 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA+VGRPNVGKSTL+N L+G +T ++ TR ++ + + DT G + + Sbjct: 14 IAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRITGINTFDDAQFVFVDTPGFQ--T 71 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 R + +L +++ +++ S T I+ + F D +++D + G +L NK D Sbjct: 72 RHSTAL-NRSLNRAVTSTLTSVDVILFVIEAGRFGPDDQKVLD-LIPPGMPTLLIANKID 129 Query: 326 MVSDKLNLL 334 V+DK +L Sbjct: 130 RVNDKASLF 138 >gi|83319722|ref|YP_424766.1| tRNA modification GTPase TrmE [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|123535480|sp|Q2SR47|MNME_MYCCT RecName: Full=tRNA modification GTPase mnmE gi|83283608|gb|ABC01540.1| tRNA modification GTPase TrmE [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 452 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 46/117 (39%), Positives = 64/117 (54%), Gaps = 10/117 (8%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG-- 63 AIVG NVGKS++ N L+ + A+V + PG TRD + GQ + V N++DTAGI Sbjct: 221 AIVGQTNVGKSSILNALINEDKAIVTDIPGTTRDIVEGQINLENVSLNLIDTAGIRKTSD 280 Query: 64 --KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVS 118 +N I K N INEA L+LF+++ K I D+ L K I+IV+ Sbjct: 281 VVENLGILKSKN-----LINEADLVLFVVN-KENINDLDNQEIFELLKDKTYILIVN 331 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 49/78 (62%), Gaps = 1/78 (1%) Query: 194 KSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPI 253 K + KN S+ ++ A+VG+ NVGKS+++N L+ ++ + G TRD V N +N + Sbjct: 209 KMAFKN-SEGIKTAIVGQTNVGKSSILNALINEDKAIVTDIPGTTRDIVEGQINLENVSL 267 Query: 254 EIFDTAGMRKPSRITESL 271 + DTAG+RK S + E+L Sbjct: 268 NLIDTAGIRKTSDVVENL 285 >gi|14195296|sp|Q9RL97|MNME_STRAG RecName: Full=tRNA modification GTPase mnmE gi|6448626|emb|CAB61255.1| thiophene degradation protein F [Streptococcus agalactiae] Length = 462 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 41/117 (35%), Positives = 68/117 (58%), Gaps = 3/117 (2%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKN 65 A +G PNVGKS L N L++++ A+V + G TRD + I GV +VDTAGI D + Sbjct: 232 AKIGRPNVGKSQLLNNLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLVDTAGIRDTDD 291 Query: 66 CSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + K ++++ A+ EA L+L +++S +T D ++ ++ N I++ NK D Sbjct: 292 I-VEKIGVERSKKALEEADLVLLVLNSSEPLTLQDRSLLELSKESN--RIVLLNKTD 345 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 40/129 (31%), Positives = 70/129 (54%), Gaps = 5/129 (3%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + + L A +GRPNVGKS L+N LL + + G TRD + N K P+++ D Sbjct: 223 KILREGLSTAKIGRPNVGKSQLLNNLLREEKAIVTDIEGTTRDVIEEYVNIKGVPLKLVD 282 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R I E + V++S +++ + +++L+++ P QD +++ + V Sbjct: 283 TAGIRDTDDIVEKI---GVERSKKALEEADLVLLVLNSSEPLTLQDRSLLELSKESNRIV 339 Query: 318 VLALNKWDM 326 + LNK D+ Sbjct: 340 L--LNKTDL 346 >gi|308388874|gb|ADO31194.1| putative GTPase [Neisseria meningitidis alpha710] Length = 311 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 48/180 (26%), Positives = 86/180 (47%), Gaps = 9/180 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N L+ +K+++ TR+R+ G + F VDT G Sbjct: 25 VAIVGRPNVGKSTLMNHLIGQKISITSKKAQTTRNRVTGIYTDDTAQFVFVDTPGFQTDH 84 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 ++ ++N A+ ++F++++ T D + L K+ P+++V NK+D Sbjct: 85 RNALNDRLNQNVTEALGGVDAVVFVVEAMR-FTDADRVVLKQL-PKHTPVVLVVNKIDKD 142 Query: 125 IAQ-RNFYEIYSLDFK------EIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 A+ R E + + +SA+H L + L +I + P +P +M+ + Sbjct: 143 KAKDRYALEAFVAQVRAEFEFAAAEAVSAKHGLRIANLLELIKPYLPESVPMYPEDMVTD 202 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 4/120 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VGRPNVGKSTL+N L+G +T ++ TR+ V+ + DT G + Sbjct: 25 VAIVGRPNVGKSTLMNHLIGQKISITSKKAQTTRNRVTGIYTDDTAQFVFVDTPGFQTDH 84 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 R +L + + +++ + + +++A + F D R+V VVL +NK D Sbjct: 85 R--NALNDRLNQNVTEALGGVDAVVFVVEA-MRFTDAD-RVVLKQLPKHTPVVLVVNKID 140 >gi|119383172|ref|YP_914228.1| GTP-binding protein Era [Paracoccus denitrificans PD1222] gi|119372939|gb|ABL68532.1| GTP-binding protein Era [Paracoccus denitrificans PD1222] Length = 303 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 50/158 (31%), Positives = 76/158 (48%), Gaps = 9/158 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A++G PN GKSTL NR+V K+++V + TR R+ G A+ VDT GI + Sbjct: 9 VALIGEPNAGKSTLLNRMVGAKVSIVTHKVQTTRARIRGIAMRGASQIVFVDTPGIFRPR 68 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKK--NIPIIIVSNKMD 122 + + M +A +IL LI++ G+T AI LR P+++V NK+D Sbjct: 69 R-RLDRSMVKAAWGGAADADVILLLIEAHRGLTDGTQAIIDNLRDHAGTTPVVLVINKID 127 Query: 123 TRIAQRNFYEI-----YSLDFKEIVEISAEHDLGTSEL 155 R+ + + DF ISAE G +L Sbjct: 128 -RVKSETLLALSQQVNAAFDFTRTFMISAEKGHGCDDL 164 Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 74/167 (44%), Gaps = 14/167 (8%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A++G PN GKSTL+NR++G + + TR + I DT G+ +P Sbjct: 9 VALIGEPNAGKSTLLNRMVGAKVSIVTHKVQTTRARIRGIAMRGASQIVFVDTPGIFRPR 68 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHA----VVLAL 321 R L++ VK + + ++L++A I+D++ + HA VVL + Sbjct: 69 R---RLDRSMVKAAWGGAADADVILLLIEAHRGLTDGTQAIIDNLRD--HAGTTPVVLVI 123 Query: 322 NKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLM 368 NK D V + L + A + + IS G G DDL+ Sbjct: 124 NKIDRVKSETLLALSQQVNAAFDFTR-----TFMISAEKGHGCDDLL 165 >gi|255263213|ref|ZP_05342555.1| GTP-binding protein Era [Thalassiobium sp. R2A62] gi|255105548|gb|EET48222.1| GTP-binding protein Era [Thalassiobium sp. R2A62] Length = 307 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 50/160 (31%), Positives = 76/160 (47%), Gaps = 9/160 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IA++G PN GKSTL NR+V K+++V + TR R+ G A+ VDT G+ + Sbjct: 13 IALIGEPNAGKSTLLNRMVGAKVSIVTHKVQTTRARIRGVAMEGQSQLVFVDTPGLFKPR 72 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFL--RKKNIPIIIVSNKMD 122 + + M ++A +++ +I+S GIT AI L R N P+ + NK+D Sbjct: 73 R-RLDRAMVAAAWSGASDADVVVLMIESHRGITEGVEAILEALEERGGNAPVALALNKID 131 Query: 123 TRIAQRNFYEIYS-----LDFKEIVEISAEHDLGTSELHS 157 R+ + DF E ISAE G L + Sbjct: 132 -RVKSEVLLGLTKEMNDRFDFAETFMISAEKGHGVDTLRT 170 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 76/164 (46%), Gaps = 10/164 (6%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++G PN GKSTL+NR++G + + TR + + DT G+ KP Sbjct: 13 IALIGEPNAGKSTLLNRMVGAKVSIVTHKVQTTRARIRGVAMEGQSQLVFVDTPGLFKPR 72 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTG--HAVVLALNK 323 R L++ V + + ++++++ + I++++ G V LALNK Sbjct: 73 R---RLDRAMVAAAWSGASDADVVVLMIESHRGITEGVEAILEALEERGGNAPVALALNK 129 Query: 324 WDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDL 367 D V K +L L TK + + + ++ IS G G+D L Sbjct: 130 IDRV--KSEVLLGL-TKEMNDRFDFAETFM--ISAEKGHGVDTL 168 >gi|219871858|ref|YP_002476233.1| tRNA modification GTPase TrmE [Haemophilus parasuis SH0165] gi|219692062|gb|ACL33285.1| tRNA modification GTPase TrmE [Haemophilus parasuis SH0165] Length = 452 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 41/121 (33%), Positives = 67/121 (55%), Gaps = 4/121 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + I G PN GKS+L N L ++ A+V + G TRD L I+G+ +I+DTAG+ + Sbjct: 217 VVIAGKPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREAS 276 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDS-KAGITPYDHAITSFLRK--KNIPIIIVSNKM 121 + + K + I +A +L +IDS ++ + +FL K KNIP+ ++ NK+ Sbjct: 277 D-EVEKIGIKRAWDEIEQADHVLLMIDSNESQADSFQQEWATFLAKLPKNIPVTVIRNKV 335 Query: 122 D 122 D Sbjct: 336 D 336 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 63/260 (24%), Positives = 124/260 (47%), Gaps = 47/260 (18%) Query: 43 GQAIINGVIFNIVDTAGIADGKNCSIAKQ--MNDQTELAINEAHLILFLIDSKAGITPYD 100 GQ I++ ++ I+ G+ + ++Q +ND+ +LA EA I LID+ + + Sbjct: 84 GQVILDLLLNRILKVKGVRIARAGEFSEQAFLNDKLDLAQAEA--IADLIDATS-----E 136 Query: 101 HAITSFLRKKNIPIIIVSNKM----DTRIAQRNFYEIYSLDF-KEIVEISAEHDLGTSEL 155 A S L+ SNK+ D+ I R + E ++DF E ++ A+ + ++L Sbjct: 137 QAARSALKSLQGEF---SNKINELVDSVIYLRTYVE-AAIDFPDEEIDFLADGKI-EAKL 191 Query: 156 HSVIFKIFKQKYPNHPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVG 215 + +I ++ N R +E+ + I EG +++ + G+PN G Sbjct: 192 NEIIAQL--------------ANVR-QEAKQGTILREG----------MKVVIAGKPNAG 226 Query: 216 KSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKT 275 KS+L+N L G + +G TRD + + P+ I DTAG+R+ S + +E+ Sbjct: 227 KSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREAS---DEVEKIG 283 Query: 276 VKKSMQSVRTCETTIVLLDA 295 +K++ + + ++++D+ Sbjct: 284 IKRAWDEIEQADHVLLMIDS 303 >gi|161869627|ref|YP_001598794.1| GTP-binding protein Era [Neisseria meningitidis 053442] gi|161595180|gb|ABX72840.1| GTPase [Neisseria meningitidis 053442] Length = 311 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 48/180 (26%), Positives = 86/180 (47%), Gaps = 9/180 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PNVGKSTL N L+ +K+++ TR+R+ G + F VDT G Sbjct: 25 VAIVGRPNVGKSTLMNHLIGQKISITSKKAQTTRNRVTGIYTDDTAQFVFVDTPGFQTDH 84 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 ++ ++N A+ ++F++++ T D + L K+ P+++V NK+D Sbjct: 85 RNALNDRLNQNVTEALGGVDAVVFVVEAMR-FTDADRVVLKQL-PKHTPVVLVVNKIDKD 142 Query: 125 IAQ-RNFYEIYSLDFK------EIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 A+ R E + + +SA+H L + L +I + P +P +M+ + Sbjct: 143 KAKDRYALEAFVAQVRAEFEFAAAEAVSAKHGLRIANLLELIKPYLPESVPMYPEDMVTD 202 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 4/120 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VGRPNVGKSTL+N L+G +T ++ TR+ V+ + DT G + Sbjct: 25 VAIVGRPNVGKSTLMNHLIGQKISITSKKAQTTRNRVTGIYTDDTAQFVFVDTPGFQTDH 84 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 R +L + + +++ + + +++A + F D R+V VVL +NK D Sbjct: 85 R--NALNDRLNQNVTEALGGVDAVVFVVEA-MRFTDAD-RVVLKQLPKHTPVVLVVNKID 140 >gi|332525372|ref|ZP_08401535.1| putative GTP-binding protein [Rubrivivax benzoatilyticus JA2] gi|332108644|gb|EGJ09868.1| putative GTP-binding protein [Rubrivivax benzoatilyticus JA2] Length = 329 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 41/123 (33%), Positives = 63/123 (51%), Gaps = 6/123 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG- 63 IAIVG PNVGKSTL N LV +K+++ TR R+ G + F VDT G Sbjct: 40 IAIVGRPNVGKSTLLNALVGQKISITSRKAQTTRHRITGIRTVGATQFVFVDTPGFQTTH 99 Query: 64 ---KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNK 120 + ++ K +N ++ + +LF+++ AG D A L + P+I+V+NK Sbjct: 100 LKRHSGAMNKTLNRTVTASVADVDAVLFMVE--AGRFGLDDAKVLALLPPDKPVILVANK 157 Query: 121 MDT 123 +D Sbjct: 158 LDA 160 Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust. Identities = 36/136 (26%), Positives = 66/136 (48%), Gaps = 4/136 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKP- 264 IA+VGRPNVGKSTL+N L+G +T ++ TR ++ DT G + Sbjct: 40 IAIVGRPNVGKSTLLNALVGQKISITSRKAQTTRHRITGIRTVGATQFVFVDTPGFQTTH 99 Query: 265 -SRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 R + ++ + + SV + + +++A F D +++ ++ V+L NK Sbjct: 100 LKRHSGAMNKTLNRTVTASVADVDAVLFMVEAG-RFGLDDAKVL-ALLPPDKPVILVANK 157 Query: 324 WDMVSDKLNLLQDLRT 339 D V + ++L L++ Sbjct: 158 LDAVRRRTDILPWLKS 173 >gi|237747089|ref|ZP_04577569.1| tRNA modification GTPase mnmE [Oxalobacter formigenes HOxBLS] gi|229378440|gb|EEO28531.1| tRNA modification GTPase mnmE [Oxalobacter formigenes HOxBLS] Length = 462 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 49/184 (26%), Positives = 94/184 (51%), Gaps = 15/184 (8%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 + + + G+ NVGKS+L+N L G + + +G TRD ++ + + P+ + DTAG+R Sbjct: 226 IHVVLAGQTNVGKSSLLNVLTGSDIAIVTPVAGTTRDKITETIQLEGIPVTLIDTAGIR- 284 Query: 264 PSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNK 323 PS + +E+ ++++ + + + LLDA++ + D +I + F V+ NK Sbjct: 285 PSTAEDEVERIGIERAWTEIEKADVILHLLDASLGPTRSDEKIA-ADFPPNIPVIQIWNK 343 Query: 324 WDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEINKLWKTRIT 383 D+ + + N+ I +Y++T +TGEG+D L +L+I W Sbjct: 344 IDISGHR---------PSTDNMFGITQVYLST---QTGEGIDLLKTELLKIAG-WVQTGE 390 Query: 384 TSYL 387 ++YL Sbjct: 391 STYL 394 Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 62/119 (52%), Gaps = 2/119 (1%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + + G NVGKS+L N L +A+V G TRD++ + G+ ++DTAGI Sbjct: 228 VVLAGQTNVGKSSLLNVLTGSDIAIVTPVAGTTRDKITETIQLEGIPVTLIDTAGIRPST 287 Query: 65 NCSIAKQMN-DQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 +++ ++ I +A +IL L+D+ G T D I + NIP+I + NK+D Sbjct: 288 AEDEVERIGIERAWTEIEKADVILHLLDASLGPTRSDEKIAADF-PPNIPVIQIWNKID 345 >gi|90421001|ref|ZP_01228905.1| putative tRNA modification GTPase [Aurantimonas manganoxydans SI85-9A1] gi|90334779|gb|EAS48555.1| putative tRNA modification GTPase [Aurantimonas manganoxydans SI85-9A1] Length = 473 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 40/127 (31%), Positives = 67/127 (52%), Gaps = 2/127 (1%) Query: 3 YTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIAD 62 + +AIVGAPN GKS+L N L +++A+V PG TRD + + G+ DTAGI + Sbjct: 218 FKVAIVGAPNAGKSSLLNALADREVAIVTEIPGTTRDVIEATLDLGGIPVRFSDTAGIRE 277 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + I ++ ++EA L+L L+D AG T + ++ L P+++ ++ Sbjct: 278 TAD-RIEAMGIERARGVMDEADLVLALVDPHAGPTTLEW-LSGLLTHVKHPLMLAGHEPA 335 Query: 123 TRIAQRN 129 + A N Sbjct: 336 SEEAHEN 342 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 56/239 (23%), Positives = 94/239 (39%), Gaps = 47/239 (19%) Query: 204 LRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRK 263 ++A+VG PN GKS+L+N L + G TRD + + + P+ DTAG+R+ Sbjct: 218 FKVAIVGAPNAGKSSLLNALADREVAIVTEIPGTTRDVIEATLDLGGIPVRFSDTAGIRE 277 Query: 264 PSRITESLEQKTVKKSMQSV---------RTCETTIVLLDATIPFEKQDLRIVDSVFNTG 314 + E++ + + M TT+ L + K L + G Sbjct: 278 TADRIEAMGIERARGVMDEADLVLALVDPHAGPTTLEWLSGLLTHVKHPLMLA------G 331 Query: 315 HAVVLALNKWDMVSDKLNLLQDLRTKAIKNL------PQIGDIYINTISGRTGEGLDDLM 368 H + + +L +RTK ++ P D + TIS RTGEGL DL+ Sbjct: 332 HEPASEEAHENRSTSSRPILT-IRTKIDQDKLTGGAPPHAPDCDL-TISTRTGEGLADLV 389 Query: 369 VSVLEINKLWKTRITTSYLNSWLQKTQLQNPPPTIFNRY-------NRLKYITQIQSSP 420 + EI T + +P + R + L+ +T+ Q++P Sbjct: 390 DRIAEI-----------------AATAVGDPDDVVPARTRHRELIGDALRLLTEFQAAP 431 >gi|167855706|ref|ZP_02478462.1| tRNA modification GTPase TrmE [Haemophilus parasuis 29755] gi|167853162|gb|EDS24420.1| tRNA modification GTPase TrmE [Haemophilus parasuis 29755] Length = 452 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 41/121 (33%), Positives = 67/121 (55%), Gaps = 4/121 (3%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + I G PN GKS+L N L ++ A+V + G TRD L I+G+ +I+DTAG+ + Sbjct: 217 VVIAGKPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREAS 276 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDS-KAGITPYDHAITSFLRK--KNIPIIIVSNKM 121 + + K + I +A +L +IDS ++ + +FL K KNIP+ ++ NK+ Sbjct: 277 D-EVEKIGIKRAWDEIEQADHVLLMIDSNESQADSFQQEWATFLAKLPKNIPVTVIRNKV 335 Query: 122 D 122 D Sbjct: 336 D 336 Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 63/260 (24%), Positives = 124/260 (47%), Gaps = 47/260 (18%) Query: 43 GQAIINGVIFNIVDTAGIADGKNCSIAKQ--MNDQTELAINEAHLILFLIDSKAGITPYD 100 GQ I++ ++ I+ G+ + ++Q +ND+ +LA EA I LID+ + + Sbjct: 84 GQVILDLLLNRILKVKGVRIARAGEFSEQAFLNDKLDLAQAEA--IADLIDATS-----E 136 Query: 101 HAITSFLRKKNIPIIIVSNKM----DTRIAQRNFYEIYSLDF-KEIVEISAEHDLGTSEL 155 A S L+ SNK+ D+ I R + E ++DF E ++ A+ + ++L Sbjct: 137 QAARSALKSLQGEF---SNKINELVDSVIYLRTYVE-AAIDFPDEEIDFLADGKI-EAKL 191 Query: 156 HSVIFKIFKQKYPNHPLEMIENNKRNEESPKENITSEGKSSVKNISKPLRIAVVGRPNVG 215 + +I ++ N R +E+ + I EG +++ + G+PN G Sbjct: 192 NEIIAQL--------------ANVR-QEAKQGTILREG----------MKVVIAGKPNAG 226 Query: 216 KSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKT 275 KS+L+N L G + +G TRD + + P+ I DTAG+R+ S + +E+ Sbjct: 227 KSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREAS---DEVEKIG 283 Query: 276 VKKSMQSVRTCETTIVLLDA 295 +K++ + + ++++D+ Sbjct: 284 IKRAWDEIEQADHVLLMIDS 303 >gi|313665711|ref|YP_004047582.1| tRNA modification GTPase TrmE [Mycoplasma leachii PG50] gi|312949836|gb|ADR24432.1| tRNA modification GTPase TrmE [Mycoplasma leachii PG50] Length = 452 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 46/117 (39%), Positives = 64/117 (54%), Gaps = 10/117 (8%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG-- 63 AIVG NVGKS++ N L+ + A+V + PG TRD + GQ + V N++DTAGI Sbjct: 221 AIVGQTNVGKSSILNALINEDKAIVTDIPGTTRDIVEGQINLENVSLNLIDTAGIRKTSD 280 Query: 64 --KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVS 118 +N I K N INEA L+LF+++ K I D+ L K I+IV+ Sbjct: 281 VVENLGILKSKN-----LINEADLVLFVVN-KENINDLDNQEIFELLKNKTYILIVN 331 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 49/78 (62%), Gaps = 1/78 (1%) Query: 194 KSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPI 253 K + KN S+ ++ A+VG+ NVGKS+++N L+ ++ + G TRD V N +N + Sbjct: 209 KMAFKN-SEGIKTAIVGQTNVGKSSILNALINEDKAIVTDIPGTTRDIVEGQINLENVSL 267 Query: 254 EIFDTAGMRKPSRITESL 271 + DTAG+RK S + E+L Sbjct: 268 NLIDTAGIRKTSDVVENL 285 >gi|293400673|ref|ZP_06644818.1| GTP-binding protein Era [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305699|gb|EFE46943.1| GTP-binding protein Era [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 301 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 61/118 (51%), Gaps = 1/118 (0%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAI+G PN GKSTL N L+ +K+A+ P TR+ + G F DT GI K Sbjct: 8 IAIIGRPNAGKSTLLNALLNEKIAITTPKPQTTRNNISGILTREDAQFIFTDTPGIHKPK 67 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 + + K +N AI EA + +++D+ D + +++ +IP ++ NK+D Sbjct: 68 H-ELGKTLNRNAYTAIAEADVNFWVVDATQSFGSGDEFLLEKIKQSHIPCFLILNKID 124 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 38/133 (28%), Positives = 67/133 (50%), Gaps = 4/133 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA++GRPN GKSTL+N LL +T + TR+++S ++ DT G+ KP Sbjct: 8 IAIIGRPNAGKSTLLNALLNEKIAITTPKPQTTRNNISGILTREDAQFIFTDTPGIHKPK 67 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 L + + + ++ + ++DAT F D +++ + + L LNK D Sbjct: 68 H---ELGKTLNRNAYTAIAEADVNFWVVDATQSFGSGDEFLLEKIKQSHIPCFLILNKID 124 Query: 326 MVSDKLNLLQDLR 338 ++ DK L++ L+ Sbjct: 125 LL-DKEKLIRTLQ 136 >gi|256820731|ref|YP_003142010.1| tRNA modification GTPase TrmE [Capnocytophaga ochracea DSM 7271] gi|256582314|gb|ACU93449.1| tRNA modification GTPase TrmE [Capnocytophaga ochracea DSM 7271] Length = 472 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 42/121 (34%), Positives = 65/121 (53%), Gaps = 7/121 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PN GKSTL N L+ ++ A+V + G TRD + I G+ F +DTAGI D + Sbjct: 230 VAIVGKPNAGKSTLLNALLNEERAIVSDIAGTTRDTIEETLHIGGIAFRFIDTAGIRDTQ 289 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLR---KKNIPIIIVSNKM 121 + A + E I +A ++L+L D K I SF++ ++ +++ NK Sbjct: 290 DQIEAIGVQKAKE-KIEKASIVLYLFDVK---DSSAQEIISFVKENYREGTKFVLLHNKT 345 Query: 122 D 122 D Sbjct: 346 D 346 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 66/135 (48%), Gaps = 4/135 (2%) Query: 196 SVKNISK-PLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIE 254 SV N+ K + +A+VG+PN GKSTL+N LL R + +G TRD++ + + Sbjct: 219 SVGNVLKNGIPVAIVGKPNAGKSTLLNALLNEERAIVSDIAGTTRDTIEETLHIGGIAFR 278 Query: 255 IFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTG 314 DTAG+R + +E V+K+ + + + L D ++ + V + G Sbjct: 279 FIDTAGIRDTQ---DQIEAIGVQKAKEKIEKASIVLYLFDVKDSSAQEIISFVKENYREG 335 Query: 315 HAVVLALNKWDMVSD 329 VL NK D+ ++ Sbjct: 336 TKFVLLHNKTDLSTE 350 >gi|227495954|ref|ZP_03926265.1| GTP-binding protein Era [Actinomyces urogenitalis DSM 15434] gi|226834508|gb|EEH66891.1| GTP-binding protein Era [Actinomyces urogenitalis DSM 15434] Length = 351 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 49/169 (28%), Positives = 75/169 (44%), Gaps = 9/169 (5%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 +VG PN GKSTL N LV K+A+ P TR + G +VDT G+ K Sbjct: 57 LVGRPNAGKSTLTNALVGSKVAITSGRPQTTRHNVRGVVHREDAQLVLVDTPGLHRPKTL 116 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 + K++ND + + ++ F I + I P D I L + PI+ V K DT Sbjct: 117 -LGKRLNDLVRETLTDVDVVAFCIPANEKIGPGDRFIARDLEQVRAPIVAVVTKADTVSR 175 Query: 127 QRNFYEIYSL----DFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHP 171 Q ++ ++ D+ +IV +SA + E V+ + P P Sbjct: 176 QALAAQLLAVNELGDWADIVPVSAV----SGEQVDVVADVLMGHLPPSP 220 Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust. Identities = 42/166 (25%), Positives = 76/166 (45%), Gaps = 7/166 (4%) Query: 208 VVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRI 267 +VGRPN GKSTL N L+G +T + TR +V + ++ + + DT G+ +P + Sbjct: 57 LVGRPNAGKSTLTNALVGSKVAITSGRPQTTRHNVRGVVHREDAQLVLVDTPGLHRPKTL 116 Query: 268 TESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWDMV 327 V++++ V I + P ++ R ++ V +V + K D V Sbjct: 117 LGKRLNDLVRETLTDVDVVAFCIPANEKIGPGDRFIARDLEQVRAP---IVAVVTKADTV 173 Query: 328 SDKLNLLQDLRTKAIKNLPQIGDIY-INTISGRTGEGLDDLMVSVL 372 S + Q L A+ L DI ++ +SG + + D+++ L Sbjct: 174 SRQALAAQLL---AVNELGDWADIVPVSAVSGEQVDVVADVLMGHL 216 >gi|198282180|ref|YP_002218501.1| tRNA modification GTPase TrmE [Acidithiobacillus ferrooxidans ATCC 53993] gi|218667012|ref|YP_002424545.1| tRNA modification GTPase TrmE [Acidithiobacillus ferrooxidans ATCC 23270] gi|198246701|gb|ACH82294.1| tRNA modification GTPase TrmE [Acidithiobacillus ferrooxidans ATCC 53993] gi|218519225|gb|ACK79811.1| tRNA modification GTPase TrmE [Acidithiobacillus ferrooxidans ATCC 23270] Length = 451 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 59/235 (25%), Positives = 104/235 (44%), Gaps = 15/235 (6%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 + + G PNVGKS+L N L +++ A+V PG TRD L + I+ G+ +VDTAG+ + Sbjct: 224 VVLAGRPNVGKSSLMNALARRESAIVTAIPGTTRDLLREEIILGGLPVELVDTAGLREAT 283 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 + A+ + + ++ A LIL + D+ G D I L + P I+ NKMD Sbjct: 284 DAVEAEGVARARNI-LHSAQLILLVADASTGWQSEDEVILRDLPEG--PRRIIWNKMDLV 340 Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEES 184 A + +E + +SA+ G LH + + + + P + ES Sbjct: 341 SAPP-----ATPTGEEAITLSAQTGAGLDTLHCSLIEALGVQGDSCPFSARRRHVEALES 395 Query: 185 PKENITSEGKS-----SVKNISKPLRIAVVGRPNVGKSTLINRLLG--YNRLLTG 232 + G + + + +++ LR A + + +LG ++R G Sbjct: 396 CAHRLGIAGDTLRLGDAPELVAQSLREAAAALAGITGHMDVEDILGEIFSRFCIG 450 Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 49/174 (28%), Positives = 89/174 (51%), Gaps = 19/174 (10%) Query: 200 ISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTA 259 +++ R+ + GRPNVGKS+L+N L + + G TRD + P+E+ DTA Sbjct: 218 LARGGRVVLAGRPNVGKSSLMNALARRESAIVTAIPGTTRDLLREEIILGGLPVELVDTA 277 Query: 260 GMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVL 319 G+R+ T+++E + V ++ + + + +++ DA+ ++ +D I+ + ++ Sbjct: 278 GLRE---ATDAVEAEGVARARNILHSAQLILLVADASTGWQSEDEVILRDLPEGPRRII- 333 Query: 320 ALNKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLE 373 NK D+VS A P G+ I T+S +TG GLD L S++E Sbjct: 334 -WNKMDLVS------------APPATP-TGEEAI-TLSAQTGAGLDTLHCSLIE 372 >gi|153811977|ref|ZP_01964645.1| hypothetical protein RUMOBE_02370 [Ruminococcus obeum ATCC 29174] gi|149831876|gb|EDM86962.1| hypothetical protein RUMOBE_02370 [Ruminococcus obeum ATCC 29174] Length = 486 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 52/182 (28%), Positives = 89/182 (48%), Gaps = 4/182 (2%) Query: 7 IVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGKNC 66 I+G PN GKS+L N LV + A+V G TRD L +NG+ ++DTAGI + ++ Sbjct: 254 ILGKPNAGKSSLLNFLVGEDRAIVTEIAGTTRDILEEYISLNGITLRVIDTAGIRETEDV 313 Query: 67 SIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTRIA 126 + ++A N A LIL+++DS + D I L + I++ NK D A Sbjct: 314 VEKIGVGKAKQMAEN-ADLILYVVDSSLPLDDNDREIMELLSGRK--SIVIYNKTDLE-A 369 Query: 127 QRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIENNKRNEESPK 186 + E+ ++ +S + G S+L I ++F + E+ N R++ + + Sbjct: 370 AVDIEELKEKTGSPVIPVSVVEETGISQLEDEIKRMFFHGELSFNDEVYITNARHKAALE 429 Query: 187 EN 188 E+ Sbjct: 430 ES 431 Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 38/146 (26%), Positives = 78/146 (53%), Gaps = 7/146 (4%) Query: 183 ESPKENITSEGKSS--VKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRD 240 E ENI+ K++ + I + ++ ++G+PN GKS+L+N L+G +R + +G TRD Sbjct: 227 EKESENISELLKTADDGRMIQEGIKTVILGKPNAGKSSLLNFLVGEDRAIVTEIAGTTRD 286 Query: 241 SVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFE 300 + + + + DTAG+R+ + E + V K+ Q + + ++D+++P + Sbjct: 287 ILEEYISLNGITLRVIDTAGIRETEDVVEKI---GVGKAKQMAENADLILYVVDSSLPLD 343 Query: 301 KQDLRIVDSVFNTGHAVVLALNKWDM 326 D I++ + +G ++ NK D+ Sbjct: 344 DNDREIMELL--SGRKSIVIYNKTDL 367 >gi|238021058|ref|ZP_04601484.1| hypothetical protein GCWU000324_00955 [Kingella oralis ATCC 51147] gi|237868038|gb|EEP69044.1| hypothetical protein GCWU000324_00955 [Kingella oralis ATCC 51147] Length = 308 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 51/180 (28%), Positives = 88/180 (48%), Gaps = 9/180 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 IAIVG PNVGKSTL N L+ +K+++ TR+R+ G + F VDT G Sbjct: 22 IAIVGRPNVGKSTLMNHLIGQKISITSKKAQTTRNRVTGIYTDDTAQFVFVDTPGFQTYH 81 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124 ++ ++N A++ +I+F++++ + D + L KN P+++V NK+D Sbjct: 82 RNALNDRLNLNVTEAVSGVDVIVFVVEA-LRFSDADRIVLKQL-PKNTPVMLVVNKIDKN 139 Query: 125 IAQRN------FYEIY-SLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIEN 177 A+ E+ DF +SA+H L + L + + + P +P +MI + Sbjct: 140 KAKDAATLDAFIAEVMQEFDFAGYEVVSAKHGLRIANLLAKLKSYLPESVPMYPEDMITD 199 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 59/120 (49%), Gaps = 4/120 (3%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 IA+VGRPNVGKSTL+N L+G +T ++ TR+ V+ + DT G + Sbjct: 22 IAIVGRPNVGKSTLMNHLIGQKISITSKKAQTTRNRVTGIYTDDTAQFVFVDTPGFQTYH 81 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 R +L + ++V + + +++A + F D RIV V+L +NK D Sbjct: 82 R--NALNDRLNLNVTEAVSGVDVIVFVVEA-LRFSDAD-RIVLKQLPKNTPVMLVVNKID 137 >gi|161760697|ref|YP_253264.2| GTP-binding protein Era [Staphylococcus haemolyticus JCSC1435] gi|317374941|sp|Q4L6R7|ERA_STAHJ RecName: Full=GTPase Era Length = 299 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 53/196 (27%), Positives = 90/196 (45%), Gaps = 19/196 (9%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 ++I+G PNVGKST NR++ K+A++ + TR+++ G N +DT GI K Sbjct: 9 VSIIGRPNVGKSTFMNRVIGHKIAIMSDKAQTTRNKIQGVMTRNDAQIIFLDTPGIHKPK 68 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDT- 123 + + M + ++E I+F+++ I D I L+ P+ +V NK+D Sbjct: 69 H-KLGDYMMRVAKNTLSEIDAIMFMVNVNEEIGRGDEYIMEMLKNVKTPVFLVLNKIDLV 127 Query: 124 -------RIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYPNHPLEMIE 176 RI Q Y ++F EIV ISA L V+ + +P + I Sbjct: 128 HPDALMPRIEQYQKY----MNFTEIVPISALEGLNVDHFIDVLKTYLPEGPKYYPDDQIS 183 Query: 177 NNKRNEESPKENITSE 192 ++ P++ + SE Sbjct: 184 DH------PEQFVVSE 193 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 31/122 (25%), Positives = 60/122 (49%), Gaps = 3/122 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 ++++GRPNVGKST +NR++G+ + ++ TR+ + + I DT G+ KP Sbjct: 9 VSIIGRPNVGKSTFMNRVIGHKIAIMSDKAQTTRNKIQGVMTRNDAQIIFLDTPGIHKPK 68 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 + K ++ + + + +++ + D I++ + N V L LNK D Sbjct: 69 HKLGDYMMRVAKNTLSEI---DAIMFMVNVNEEIGRGDEYIMEMLKNVKTPVFLVLNKID 125 Query: 326 MV 327 +V Sbjct: 126 LV 127 >gi|315223865|ref|ZP_07865713.1| tRNA modification GTPase TrmE [Capnocytophaga ochracea F0287] gi|314946195|gb|EFS98196.1| tRNA modification GTPase TrmE [Capnocytophaga ochracea F0287] Length = 472 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 42/121 (34%), Positives = 65/121 (53%), Gaps = 7/121 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +AIVG PN GKSTL N L+ ++ A+V + G TRD + I G+ F +DTAGI D + Sbjct: 230 VAIVGKPNAGKSTLLNALLNEERAIVSDIAGTTRDTIEETLHIGGIAFRFIDTAGIRDTQ 289 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLR---KKNIPIIIVSNKM 121 + A + E I +A ++L+L D K I SF++ ++ +++ NK Sbjct: 290 DQIEAIGVQKAKE-KIEKASIVLYLFDVK---DSSAQEIISFVKENYREGTKFVLLHNKT 345 Query: 122 D 122 D Sbjct: 346 D 346 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 66/135 (48%), Gaps = 4/135 (2%) Query: 196 SVKNISK-PLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIE 254 SV N+ K + +A+VG+PN GKSTL+N LL R + +G TRD++ + + Sbjct: 219 SVGNVLKNGIPVAIVGKPNAGKSTLLNALLNEERAIVSDIAGTTRDTIEETLHIGGIAFR 278 Query: 255 IFDTAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTG 314 DTAG+R + +E V+K+ + + + L D ++ + V + G Sbjct: 279 FIDTAGIRDTQ---DQIEAIGVQKAKEKIEKASIVLYLFDVKDSSAQEIISFVKENYREG 335 Query: 315 HAVVLALNKWDMVSD 329 VL NK D+ ++ Sbjct: 336 TKFVLLHNKTDLSTE 350 >gi|289524240|ref|ZP_06441094.1| tRNA modification GTPase TrmE [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289502896|gb|EFD24060.1| tRNA modification GTPase TrmE [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 462 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 38/129 (29%), Positives = 70/129 (54%), Gaps = 5/129 (3%) Query: 198 KNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFD 257 K + +++A+VGRPNVGKS++ N LL R + G TRD + S + PI D Sbjct: 221 KALRDGIKVAIVGRPNVGKSSIFNALLEETRAIVTPIPGTTRDIIEGSIVHRGIPIIFMD 280 Query: 258 TAGMRKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAV 317 TAG+R + E++ V + +++R + + ++D + K+++ + + N H Sbjct: 281 TAGLRATDDLVETI---GVSMAQKALREADLRLWIIDGSEQLTKEEIDMAMELKNHSH-- 335 Query: 318 VLALNKWDM 326 ++A+NK D+ Sbjct: 336 IVAINKADI 344 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 44/120 (36%), Positives = 65/120 (54%), Gaps = 7/120 (5%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGI--AD 62 +AIVG PNVGKS++FN L+++ A+V PG TRD + G + G+ +DTAG+ D Sbjct: 229 VAIVGRPNVGKSSIFNALLEETRAIVTPIPGTTRDIIEGSIVHRGIPIIFMDTAGLRATD 288 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 +I M + A+ EA L L++ID +T + I + KN I+ NK D Sbjct: 289 DLVETIGVSMAQK---ALREADLRLWIIDGSEQLTKEE--IDMAMELKNHSHIVAINKAD 343 >gi|226355396|ref|YP_002785136.1| tRNA modification GTPase TrmE [Deinococcus deserti VCD115] gi|226317386|gb|ACO45382.1| putative tRNA modification GTPase [Deinococcus deserti VCD115] Length = 439 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 42/142 (29%), Positives = 67/142 (47%), Gaps = 11/142 (7%) Query: 165 QKYPNHPLEMIENNKRN------EESPKENITSEGKSSVKNISKPLRIAVVGRPNVGKST 218 Q ++P E + R E+ E + S V ++ R+A++GRPNVGKS+ Sbjct: 178 QAMLDYPEEGVPEEDRELPLQAAEQDLSELVQSARAGQVA--TRGARLALIGRPNVGKSS 235 Query: 219 LINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPSRITESLEQKTVKK 278 L+N LLGY R + G TRD + P+ + DTAG+R T+ +E V++ Sbjct: 236 LLNALLGYERSIVTPIPGTTRDYLEAGVELAGVPVTLVDTAGIRH---TTDQVEAAGVRQ 292 Query: 279 SMQSVRTCETTIVLLDATIPFE 300 ++ + + L D P E Sbjct: 293 AVALAGAADLVLALEDGQQPRE 314 Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 34/89 (38%), Positives = 48/89 (53%), Gaps = 1/89 (1%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64 +A++G PNVGKS+L N L+ + ++V PG TRD L + GV +VDTAGI Sbjct: 223 LALIGRPNVGKSSLLNALLGYERSIVTPIPGTTRDYLEAGVELAGVPVTLVDTAGIRHTT 282 Query: 65 NCSIAKQMNDQTELAINEAHLILFLIDSK 93 + A + LA A L+L L D + Sbjct: 283 DQVEAAGVRQAVALA-GAADLVLALEDGQ 310 >gi|110004378|emb|CAK98716.1| probable gtp-binding protein era [Spiroplasma citri] Length = 294 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 48/120 (40%), Positives = 64/120 (53%), Gaps = 5/120 (4%) Query: 5 IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIV--DTAGIAD 62 +AIVG PNVGKSTL N ++ K+A+V TR+R+ Q I N IV DT GI Sbjct: 8 VAIVGRPNVGKSTLLNTILNNKVAIVTAKAQTTRNRI--QGIYNDQESQIVFMDTPGIHK 65 Query: 63 GKNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMD 122 N + K MN A A +ILFL + I D I L+++ IPI++V K+D Sbjct: 66 AHN-EMGKFMNKVALSATKAADVILFLAPANERIGDNDRYIIKALQERAIPIVLVVTKID 124 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 33/123 (26%), Positives = 58/123 (47%), Gaps = 3/123 (2%) Query: 206 IAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGMRKPS 265 +A+VGRPNVGKSTL+N +L + +++ TR+ + +N + I DT G+ K Sbjct: 8 VAIVGRPNVGKSTLLNTILNNKVAIVTAKAQTTRNRIQGIYNDQESQIVFMDTPGIHKAH 67 Query: 266 RITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLALNKWD 325 K ++ + + + + L A D I+ ++ +VL + K D Sbjct: 68 NEMGKFMNKV---ALSATKAADVILFLAPANERIGDNDRYIIKALQERAIPIVLVVTKID 124 Query: 326 MVS 328 +VS Sbjct: 125 LVS 127 >gi|331703092|ref|YP_004399779.1| tRNA modification GTPase [Mycoplasma mycoides subsp. capri LC str. 95010] gi|328801647|emb|CBW53800.1| tRNA modification GTPase [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 452 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 45/116 (38%), Positives = 63/116 (54%), Gaps = 11/116 (9%) Query: 6 AIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADG-- 63 AIVG NVGKS++ N L+ + A+V + PG TRD + GQ + V N++DTAGI Sbjct: 221 AIVGQTNVGKSSILNALINEDKAIVTDIPGTTRDIVEGQINLENVSLNLIDTAGIRKTSD 280 Query: 64 --KNCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYD-HAITSFLRKKNIPIII 116 +N I K N INEA L+LF+++ K I D I L+ K +I+ Sbjct: 281 VVENLGILKSKN-----LINEADLVLFVVN-KENINDLDNQEIFDLLKDKTYILIV 330 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 49/78 (62%), Gaps = 1/78 (1%) Query: 194 KSSVKNISKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPI 253 K + KN S+ ++ A+VG+ NVGKS+++N L+ ++ + G TRD V N +N + Sbjct: 209 KMAFKN-SEGIKTAIVGQTNVGKSSILNALINEDKAIVTDIPGTTRDIVEGQINLENVSL 267 Query: 254 EIFDTAGMRKPSRITESL 271 + DTAG+RK S + E+L Sbjct: 268 NLIDTAGIRKTSDVVENL 285 >gi|157964182|ref|YP_001499006.1| GTP-binding protein Era [Rickettsia massiliae MTU5] gi|157843958|gb|ABV84459.1| GTP-binding protein Era [Rickettsia massiliae MTU5] Length = 347 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 46/174 (26%), Positives = 91/174 (52%), Gaps = 6/174 (3%) Query: 202 KPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQSGITRDSVSISWNWKNHPIEIFDTAGM 261 K + + ++GRPN GKSTL+NR++G + + TR ++ K+ + ++DT G+ Sbjct: 59 KTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGI 118 Query: 262 RKPSRITESLEQKTVKKSMQSVRTCETTIVLLDATIPFEKQDLRIVDSVFNTGHAVVLAL 321 +P SLE+ V+ + S+ + + ++++D+ F+ I+D + + + L Sbjct: 119 FEPKG---SLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLL 175 Query: 322 NKWDMVSDKLNLLQDLRTKAIKNLPQIGDIYINTISGRTGEGLDDLMVSVLEIN 375 NK D+ S LN D++ +N P I+ +SG+ +GL + + S +I+ Sbjct: 176 NKIDIESKYLN---DIKAFLTENHPDSLLFPISALSGKNIDGLLEYITSKAKIS 226 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 40/119 (33%), Positives = 61/119 (51%), Gaps = 1/119 (0%) Query: 4 TIAIVGAPNVGKSTLFNR