RPSBLAST alignment for GI: 255764471 and conserved domain: cd04164

>gnl|CDD|133364 cd04164, trmE, TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. Length = 157

 Score =  117 bits (295), Expect = 7e-27
 Identities = 55/160 (34%), Positives = 80/160 (50%), Gaps = 6/160 (3%)

Query: 5   IAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGITRDRLYGQAIINGVIFNIVDTAGIADGK 64
           + IVG PNVGKS+L N L  +  A+V +  G TRD +     I G+   ++DTAGI + +
Sbjct: 4   VVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETE 63

Query: 65  NCSIAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLRKKNIPIIIVSNKMDTR 124
           +  I K   ++   AI EA L+LF+ID+  G+   D  I      K  PII+V NK D  
Sbjct: 64  D-EIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILELPADK--PIIVVLNKSDLL 120

Query: 125 IAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFK 164
                   +     K I+ ISA+   G  EL   + ++  
Sbjct: 121 PDSELLSLL---AGKPIIAISAKTGEGLDELKEALLELAG 157