HHsearch alignment for GI: 255764472 and conserved domain: TIGR00539
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase; InterPro: IPR004559 Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins called HemN (IPR004558 from INTERPRO). This family contains a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including Escherichia coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the Escherichia coli hemN family. The member of this family from Bacillus subtilis was shown to complement a hemF/hemN double mutant of Salmonella typhimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize haem de novo. ; GO: 0004109 coproporphyrinogen oxidase activity, 0006779 porphyrin biosynthetic process, 0005737 cytoplasm.
Probab=98.99 E-value=4.4e-09 Score=87.56 Aligned_cols=199 Identities=16% Similarity=0.248 Sum_probs=136.6
Q ss_pred EEEEECCCCCCCCCCCCHHHHHHHHHH-HHHHHH----HHHHHHHHHC-C--CCEEEEECCCC-CEEEECCCCC--CCCC
Q ss_conf 787412332446811100122137641-005889----9988763101-3--31058731454-1134113444--3100
Q gi|255764472|r 178 AFLTIQEGCDKFCTFCVVPYTRGIEIS-RSLSQV----VDEARKLIDN-G--VCEITLLGQNV-NAWRGKGLDG--EKCT 246 (469)
Q Consensus 178 a~ikI~~GC~~~CsfC~ip~~RG~~rS-r~~~~I----v~ei~~l~~~-G--~kEi~L~g~d~-~~Y~g~~~~~--~~~~ 246 (469)
T Consensus 3 lYIHI-PfCe~kC~YCdFNs--y~~ksd~p~~eY~~aL~~dl~~~l~~t~dsiqQ-----~~l~siFIGGGTP~~lS~e~ 74 (371)
T TIGR00539 3 LYIHI-PFCEQKCGYCDFNS--YAQKSDIPKEEYLQALLQDLKAALAKTDDSIQQ-----EDLKSIFIGGGTPSLLSAEA 74 (371)
T ss_pred EEEEC-CHHCCCCCCCCCCC--HHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCC-----CCCCEEEECCCCCCHHHHHH
T ss_conf 35556-02237588865332--455427856799999999999999860443236-----76556885688741468999
Q ss_pred CCHHHHHHHCCCC-C-CCCCCC-CCCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 0216788620444-3-001354-421000100036652022111220133211145789987303334411467899987
Q gi|255764472|r 247 FSDLLYSLSEIKG-L-VRLRYT-TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 (469)
Q Consensus 247 l~~Ll~~l~~i~~-~-~riR~~-s~~P~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~~~r 323 (469)
T Consensus 75 ~~~l~~~I~~~~~P~sd~~Eit~eANP~~~~ae~~kglk~aG-in-RlS~GvQsF~dDkL~~lgR~H~~k~~~~a~e~a~ 152 (371)
T TIGR00539 75 LKKLLEEIKKQLKPLSDDIEITVEANPDLVEAEKLKGLKEAG-IN-RLSLGVQSFEDDKLEKLGRVHKAKDVASAVELAK 152 (371)
T ss_pred HHHHHHHHHHHCCCCCCCCCEEECCCCCHHHHHHHHHHHHCC-EE-EEECCCCCCHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 999999987521743102111110782125698863676557-02-3321334541557888642113334667999998
Q ss_pred HHCCCC-CCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEECCCHHHHHCCCC----CCHHHHH
Q ss_conf 401344-3200000135220124789886332210111002000011120123214368----8989999
Q gi|255764472|r 324 SVRPDI-AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ----VDENVKA 388 (469)
Q Consensus 324 ~~~p~~-~i~tdiIvGfPgETeedf~~Tl~~i~~~~~~~~~vf~yS~r~gT~Aa~m~~q----V~~~vk~ 388 (469)
T Consensus 153 ~s--G~enislDL~~glP~qtl~~l~~~l~~A~eL~~~H~S~Y~L~vEpnT~f~~~~~KGrlhlP~~~~~ 220 (371)
T TIGR00539 153 KS--GLENISLDLMYGLPLQTLEELKEELKLALELDAEHLSVYALIVEPNTVFEKRAKKGRLHLPDDDAL 220 (371)
T ss_pred HC--CCCCCCHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHCCCCCCCCCCCCHHH
T ss_conf 71--752000554407861348999999865531784511233234223304542688887894670345