HHsearch alignment for GI: 255764472 and conserved domain: TIGR01125
>TIGR01125 TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125; InterPro: IPR005840 This is a family of mainly hypothetical proteins of unknown function. .
Probab=100.00 E-value=0 Score=860.69 Aligned_cols=434 Identities=32% Similarity=0.529 Sum_probs=393.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHCCCEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 79999579856887899999999987986877601088999927832507999999999999987676642189818999
Q gi|255764472|r 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVV 105 (469)
Q Consensus 26 kv~i~TlGC~~N~~Dse~i~~~L~~~G~~~~~~~~~ADviiINTCsV~~~ae~k~~~~i~~~~~~~~~~~k~~p~~~IvV 105 (469)
T Consensus 1 kig~~sLGC~KNlvDSE~~Lg~L~~~Gye~~~~~e~AD~vIvNTC~FI~~A~~ES~~~i~e~~d~K~-----~y~~KviV 75 (475)
T TIGR01125 1 KIGFVSLGCPKNLVDSEVLLGKLREAGYEVTPNYEDADVVIVNTCGFIEDAKQESIDTIGELLDAKD-----EYGKKVIV 75 (475)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCCEEEECCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHH-----HCCCEEEE
T ss_conf 9378834887235669999988854584430684547778980442304789999999999987586-----52975999
Q ss_pred ECCCCCCCHHHHHHHHCCCCCCCCCHHHCCHHHHHHHHCCCCEECC----CCC--------------CCCCCCCCCCCCC
Q ss_conf 6473010878898741001100110011131688875305970023----554--------------4112444333334
Q gi|255764472|r 106 AGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVD----TDY--------------SVEDKFERLSIVD 167 (469)
Q Consensus 106 tGC~aq~~~e~l~~~~p~vd~vig~~~~~~i~~~i~~~~~g~~~~~----~~~--------------~~~~~~~~~~~~~ 167 (469)
T Consensus 76 ~GCL~~~y~e~L~~~~P~v~~~~G~~d~~~i~~~i~~~~~~qrv~~~~~~~~~~~~~~pg~ragve~p~ren~rhgdvf~ 155 (475)
T TIGR01125 76 TGCLVERYKEELKEEIPEVKAITGTEDVEEILNAIESLEPGQRVKDKLPFKSEIPEEEPGMRAGVETPQRENTRHGDVFV 155 (475)
T ss_pred ECCCCCCCHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
T ss_conf 65566543466542075236752588889999999742265203553677564112477520124564311345564574
Q ss_pred CCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCC-----
Q ss_conf 575677772578741233244681110012213764100588999887631013310587314541134113444-----
Q gi|255764472|r 168 GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG----- 242 (469)
Q Consensus 168 ~~~~~~~~~~a~ikI~~GC~~~CsfC~ip~~RG~~rSr~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y~g~~~~~----- 242 (469)
T Consensus 156 pR~~~Tpr~YAYlKvaEGC~~~CaFCiIP~~rG~~rSR~ie~i~~Ea~~L~~~GvKEiiliaQDTt~Y-G~DL~~R~~~~ 234 (475)
T TIGR01125 156 PRIKLTPRHYAYLKVAEGCNRRCAFCIIPSLRGKLRSRPIEEILKEAKRLVDQGVKEIILIAQDTTAY-GVDLYTRESEF 234 (475)
T ss_pred CCCCCCCCCEEEEEECCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCC-CCEEEECCCCC
T ss_conf 02036877403687005778986521362336776776888899999999843983899996403477-64111105522
Q ss_pred -CC---CCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHH
Q ss_conf -31---00021678862044430013544210001000366520221112201332111457899873033344114678
Q gi|255764472|r 243 -EK---CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 (469)
Q Consensus 243 -~~---~~l~~Ll~~l~~i~~~~riR~~s~~P~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~ 318 (469)
T Consensus 235 ~~e~v~~~L~~Ll~~L~k~~G~~WiR~~YlYP~~~~~~vI~~m~~~~KvLPYlDiPLQH~sd~ILK~M~R~~~~~~~~~~ 314 (475)
T TIGR01125 235 DGEQVKSKLVELLEELGKLGGIYWIRLLYLYPDELTDDVIDLMAEGPKVLPYLDIPLQHASDRILKLMRRPGSGEEQLDL 314 (475)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHCCCCCCCEECCCCCCCCHHHHHCCCCCCCHHHHHHH
T ss_conf 40145789999999740058962278887608888667889986389805122543123873787427899638899999
Q ss_pred HHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEECCCHHHHHCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 99987401344320000013522012478988633221011100200001112012321436889899999999999999
Q gi|255764472|r 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKL 398 (469)
Q Consensus 319 i~~~r~~~p~~~i~tdiIvGfPgETeedf~~Tl~~i~~~~~~~~~vf~yS~r~gT~Aa~m~~qV~~~vk~~R~~~l~~~~ 398 (469)
T Consensus 315 i~~~R~~~P~~vlRttfIVGFPGETEEdF~eL~~Fv~e~~~D~lG~F~YS~eEgt~A~~Lpd~vPeEVk~~R~~~Lm~lQ 394 (475)
T TIGR01125 315 IERLREKVPDAVLRTTFIVGFPGETEEDFQELLDFVEEGQFDRLGVFTYSPEEGTDAFALPDQVPEEVKEERRERLMALQ 394 (475)
T ss_pred HHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 99999755661772246886889987889999999852021500002078323660350778878888999999999998
Q ss_pred HHHHHHHHHHHCCCEEEEEEECCCCCCC-----EEEEE----CCCCCEEEECCC-----CCCCCCEEEEEEEEEECCEEE
Q ss_conf 9999999998579789999842568086-----89999----878628897388-----767688899999983087389
Q gi|255764472|r 399 REQQVSFNDACVGQIIEVLIEKHGKEKG-----KLVGR----SPWLQSVVLNSK-----NHNIGDIIKVRITDVKISTLY 464 (469)
Q Consensus 399 ~~~~~~~~~~~iG~~~~Vlve~~~~~~~-----~~~G~----t~~~~~V~~~~~-----~~~~G~~v~V~I~~~~~~~L~ 464 (469)
T Consensus 395 ~~Is~~kn~~~vG~~~~vlId~~~~~~~d~pg~~~~GR~~~~APEvDG~Vyv~~~~~~~~~k~Gdi~~v~i~~~d~YDL~ 474 (475)
T TIGR01125 395 QRISAKKNQEFVGKKIEVLIDEYEEETNDQPGLELIGRSYGQAPEVDGVVYVNGAKLETLVKIGDILRVKITETDEYDLW 474 (475)
T ss_pred HHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEEEEECCCCCCC
T ss_conf 88889998884373777887055787777676146530114488868758883256332236788789998521665578
Q ss_pred E
Q ss_conf 9
Q gi|255764472|r 465 G 465 (469)
Q Consensus 465 G 465 (469)
T Consensus 475 G 475 (475)
T TIGR01125 475 G 475 (475)
T ss_pred C
T ss_conf 9