HHsearch alignment for GI: 255764472 and conserved domain: TIGR03471
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=100.00 E-value=3.9e-38 Score=304.41 Aligned_cols=291 Identities=23% Similarity=0.323 Sum_probs=223.8
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHCCCCCC-CCCHHHCCHHHH
Q ss_conf 0889999278325079999999999999876766421898189996473010878898741001100-110011131688
Q gi|255764472|r 61 DADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV-VGPQTYYRLPEL 139 (469)
Q Consensus 61 ~ADviiINTCsV~~~ae~k~~~~i~~~~~~~~~~~k~~p~~~IvVtGC~aq~~~e~l~~~~p~vd~v-ig~~~~~~i~~~ 139 (469)
T Consensus 68 ~~d~v~i~t~Tps~~~~~~~---a~~~K-------~~~P~~~ivlgG~H~T~~pee~L~~~~~iD~VvrGEgE~t-l~el 136 (472)
T TIGR03471 68 DYDLVVLHTSTPSFPSDVKT---AEALK-------EQNPATKIGFVGAHVAVLPEKTLKQGPAIDFVCRREFDYT-IKEV 136 (472)
T ss_pred CCCEEEEEECCCCHHHHHHH---HHHHH-------HHCCCCEEEEECCCCCCCHHHHHHCCCCEEEEEECCHHHH-HHHH
T ss_conf 69989999258656889999---99999-------7688988999787643689999843897269992646999-9999
Q ss_pred HHHH------------CCCCEECCCCCCCCCCCCCCCCCCCCCCC-----------CCCCEEEEEECCCCCCCCCCCCHH
Q ss_conf 8753------------05970023554411244433333457567-----------777257874123324468111001
Q gi|255764472|r 140 LERA------------RFGKRVVDTDYSVEDKFERLSIVDGGYNR-----------KRGVTAFLTIQEGCDKFCTFCVVP 196 (469)
Q Consensus 140 i~~~------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~a~ikI~~GC~~~CsfC~ip 196 (469)
T Consensus 137 ~~g~~l~~I~Gi~yr~~dG~Iv~~p~r~~i~dLD~LPf~~p~y~~dL~~~~Y~~~~~~~p~~~i~TSRGCP~~C~FC~~p 216 (472)
T TIGR03471 137 AEGKPLAEIDGLSYRGKDGKIVHNPDRPMIEDMDALPFVAPVYKRDLDIERYFIGYLKHPYISLYTGRGCPSKCTFCLWP 216 (472)
T ss_pred HCCCCHHHCCEEEEECCCCCEEECCCCCCCCHHHHCCCCCHHHHHHCCHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCC
T ss_conf 74998533982599879996887999866100420888762343028986633542458614764179988779687882
Q ss_pred HHH-H-HHHHHHHHHHHHHHHHHHHC--CCCEEEEECCCCCEEEECCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 221-3-76410058899988763101--3310587314541134113444310002167886204443001354421000
Q gi|255764472|r 197 YTR-G-IEISRSLSQVVDEARKLIDN--GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272 (469)
Q Consensus 197 ~~R-G-~~rSr~~~~Iv~ei~~l~~~--G~kEi~L~g~d~~~Y~g~~~~~~~~~l~~Ll~~l~~i~~~~riR~~s~~P~~ 272 (469)
T Consensus 217 ~~~~Gr~~R~RSpe~VvdEIe~l~~~y~gv~~~~f~--------DD~Ft~~~~r~~eic~~i~~l-~i~W~~~~R---v~ 284 (472)
T TIGR03471 217 QTVGGHRYRTRSAESVIEEVKYALENFPEVREFFFD--------DDTFTDDKPRAEEIARKLGPL-GVTWSCNAR---AN 284 (472)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEE--------CCCCCCCHHHHHHHHHHHHHC-CCEEEEEEE---CC
T ss_conf 102688662159999999999999866897589994--------776678999999999999876-982787630---34
Q ss_pred CCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 10003665202211122013321114578998730333441146789998740134432000001352201247898863
Q gi|255764472|r 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352 (469)
Q Consensus 273 ~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~~~r~~~p~~~i~tdiIvGfPgETeedf~~Tl~ 352 (469)
T Consensus 285 ~d~E~l~~mk~AG--c~~v~~GiESgsq~iL~~i~K~~t~e~~~~av~~~k~~--GI~v~~~FIiG~PgET~Eti~~Ti~ 360 (472)
T TIGR03471 285 VDYETLKVMKENG--LRLLLVGYESGDQQILKNIKKGLTVEIARRFTRDCHKL--GIKVHGTFILGLPGETRETIRKTID 360 (472)
T ss_pred CCHHHHHHHHHHC--CEEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHC--CCEEEEEEEECCCCCCHHHHHHHHH
T ss_conf 8999999999839--84899803758999999853899899999999988757--9879999987799998899999999
Q ss_pred HHHHHHHHHCCCHHEEECCCHHHHHC
Q ss_conf 32210111002000011120123214
Q gi|255764472|r 353 LVDKIGYAQAFSFKYSPRLGTPGSNM 378 (469)
Q Consensus 353 ~i~~~~~~~~~vf~yS~r~gT~Aa~m 378 (469)
T Consensus 361 fa~~l~~d~~~~si~tPyPGT~ly~~ 386 (472)
T TIGR03471 361 FAKELNPHTIQVSLAAPYPGTELYDQ 386 (472)
T ss_pred HHHHCCCCEEEEEEECCCCCCHHHHH
T ss_conf 99975989089987258899699999