HHsearch alignment for GI: 255764472 and conserved domain: cd02065
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=93.99 E-value=0.42 Score=27.99 Aligned_cols=84 Identities=29% Similarity=0.392 Sum_probs=49.6
Q ss_pred HHHHHHHHCCCEECCC--------------CCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 9999999879868776--------------01088999927832507999999999999987676642189818999647
Q gi|255764472|r 43 RMEDMFFSQGYERVNS--------------MDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGC 108 (469)
Q Consensus 43 ~i~~~L~~~G~~~~~~--------------~~~ADviiINTCsV~~~ae~k~~~~i~~~~~~~~~~~k~~p~~~IvVtGC 108 (469)
T Consensus 18 ~v~~~l~~~g~~v~~lg~~~~~e~~v~~~~~~~~dvVgi-S~~~~~~~--~~~~~~~~~~------~~~~~~v~vv~GG~ 88 (125)
T cd02065 18 IVAIALRDNGFEVIDLGVDVPPEEIVEAAKEEDADVVGL-SALSTTHM--EAMKLVIEAL------KELGIDIPVVVGGA 88 (125)
T ss_pred HHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHCCCEEEE-ECCHHHHH--HHHHHHHHHH------HHCCCCCEEEECCC
T ss_conf 999999978998998999889999999998608999998-52113018--9999999999------96799875997588
Q ss_pred CCCCCHHHHHHHHCCCCCC-CCCHHHCCHHHHHH
Q ss_conf 3010878898741001100-11001113168887
Q gi|255764472|r 109 VAQAEGEEILRRSPIVNVV-VGPQTYYRLPELLE 141 (469)
Q Consensus 109 ~aq~~~e~l~~~~p~vd~v-ig~~~~~~i~~~i~ 141 (469)
T Consensus 89 ~~t~~~~~-----~~~d~v~~Gege~~-~~~~~~ 116 (125)
T cd02065 89 HPTADPEE-----PKVDAVVIGEGEYA-GPALLE 116 (125)
T ss_pred CCCCCHHH-----HCCCEEEECCEEEE-HHHHHH
T ss_conf 79867355-----27675757784582-518887