HHsearch alignment for GI: 255764472 and conserved domain: cd02071
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=92.04 E-value=1.1 Score=24.92 Aligned_cols=104 Identities=20% Similarity=0.301 Sum_probs=61.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCEECCC--------------CCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99995798568878999999999879868776--------------0108899992783250799999999999998767
Q gi|255764472|r 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNS--------------MDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 (469)
Q Consensus 27 v~i~TlGC~~N~~Dse~i~~~L~~~G~~~~~~--------------~~~ADviiINTCsV~~~ae~k~~~~i~~~~~~~~ 92 (469)
T Consensus 2 vliak~g~DgHd~G~~iva~~l~d~GfeVi~lG~~~s~eeiv~~A~~e~ad~IglSsL~--g~h~~~~~~l~~~L~e--- 76 (122)
T cd02071 2 ILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQTPEEIVEAAIQEDVDVIGLSSLS--GGHMTLFPEVIELLRE--- 76 (122)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEECCC--CCHHHHHHHHHHHHHH---
T ss_conf 79996478622877999999999789769967998899999999997399899996465--5447899999999997---
Q ss_pred HHHHCCCCCEEEEECCCCCCCHHHHHHHHCCCCCCCCCHHHCCHHHHHHH
Q ss_conf 66421898189996473010878898741001100110011131688875
Q gi|255764472|r 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 (469)
Q Consensus 93 ~~~k~~p~~~IvVtGC~aq~~~e~l~~~~p~vd~vig~~~~~~i~~~i~~ 142 (469)
T Consensus 77 ---~G~~di~v~vGG~Ip~~d~~~l~~--~Gv~~vf~pgt--~~~~iv~~ 119 (122)
T cd02071 77 ---LGAGDILVVGGGIIPPEDYELLKE--MGVAEIFGPGT--SIEEIIDK 119 (122)
T ss_pred ---CCCCCCEEEEECCCCHHHHHHHHH--CCCCEEECCCC--CHHHHHHH
T ss_conf ---699984699945649899999997--79988989588--99999999