Query gi|255764472|ref|YP_003064841.2| 2-methylthioadenine synthetase (miaB-like) protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 469
No_of_seqs 165 out of 4229
Neff 6.2
Searched_HMMs 39220
Date Sun May 29 19:48:20 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 255764472.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00089 TIGR00089 RNA modifi 100.0 0 0 1014.3 34.1 432 26-465 1-455 (455)
2 COG0621 MiaB 2-methylthioadeni 100.0 0 0 951.3 36.5 432 23-468 1-436 (437)
3 TIGR01579 MiaB-like-C MiaB-lik 100.0 0 0 905.9 29.6 417 29-455 1-492 (492)
4 TIGR01574 miaB-methiolase tRNA 100.0 0 0 909.4 27.0 436 26-468 1-456 (456)
5 TIGR01125 TIGR01125 MiaB-like 100.0 0 0 860.7 31.7 434 26-465 1-475 (475)
6 TIGR01578 MiaB-like-B MiaB-lik 100.0 0 0 773.7 24.0 428 26-468 1-487 (487)
7 KOG2492 consensus 100.0 0 0 635.4 21.5 441 24-468 72-547 (552)
8 KOG4355 consensus 100.0 0 0 605.9 25.4 423 20-468 48-475 (547)
9 TIGR03471 HpnJ hopanoid biosyn 100.0 3.9E-38 9.8E-43 304.4 18.2 291 61-378 68-386 (472)
10 smart00729 Elp3 Elongator prot 100.0 1.4E-29 3.7E-34 240.4 10.7 209 177-391 2-213 (216)
11 COG1032 Fe-S oxidoreductase [E 100.0 3.1E-26 7.9E-31 215.5 18.5 331 41-390 34-415 (490)
12 pfam00919 UPF0004 Uncharacteri 99.9 5.3E-27 1.3E-31 221.3 11.2 98 26-129 1-98 (98)
13 cd01335 Radical_SAM Radical SA 99.9 1.1E-23 2.9E-28 196.4 11.1 197 180-390 1-201 (204)
14 COG1031 Uncharacterized Fe-S o 99.9 2.9E-20 7.3E-25 171.0 19.1 285 176-465 183-503 (560)
15 TIGR02026 BchE magnesium-proto 99.9 7.7E-21 2E-25 175.3 14.8 314 42-376 27-389 (506)
16 PRK08208 coproporphyrinogen II 99.7 2.9E-17 7.5E-22 148.5 12.6 210 176-397 46-265 (436)
17 PRK08599 coproporphyrinogen II 99.7 4.1E-17 1E-21 147.5 12.9 183 185-378 10-200 (377)
18 PRK05799 coproporphyrinogen II 99.7 7.5E-17 1.9E-21 145.5 12.9 182 185-378 12-199 (374)
19 PRK05904 coproporphyrinogen II 99.7 1E-16 2.6E-21 144.6 12.6 206 179-397 10-222 (353)
20 PRK08207 coproporphyrinogen II 99.7 1.3E-16 3.4E-21 143.7 12.2 196 173-380 170-380 (497)
21 PRK09057 coproporphyrinogen II 99.7 2.8E-16 7.1E-21 141.2 12.2 184 185-378 13-204 (381)
22 PRK07379 coproporphyrinogen II 99.7 4.9E-16 1.3E-20 139.4 13.4 212 175-398 10-240 (399)
23 PRK08807 consensus 99.7 1.7E-16 4.4E-21 142.8 11.0 200 177-387 10-219 (385)
24 PRK06582 coproporphyrinogen II 99.7 4.2E-16 1.1E-20 139.9 12.8 194 174-378 10-210 (390)
25 PRK05660 coproporphyrinogen II 99.7 5.7E-16 1.4E-20 138.9 12.8 199 178-387 9-216 (378)
26 PRK08446 coproporphyrinogen II 99.7 1.5E-16 3.8E-21 143.3 9.8 184 185-379 9-200 (351)
27 PRK05628 coproporphyrinogen II 99.7 4.3E-16 1.1E-20 139.8 12.0 213 178-399 5-234 (376)
28 pfam04055 Radical_SAM Radical 99.7 2.4E-16 6.2E-21 141.7 9.2 161 180-354 1-165 (165)
29 PRK08898 coproporphyrinogen II 99.7 9.6E-16 2.5E-20 137.2 12.2 202 175-387 19-229 (393)
30 PRK08949 consensus 99.7 1.6E-15 4.2E-20 135.5 13.1 201 177-388 8-217 (378)
31 PRK06294 coproporphyrinogen II 99.7 1.3E-15 3.4E-20 136.2 12.4 190 175-378 6-203 (374)
32 PRK09058 coproporphyrinogen II 99.7 1E-15 2.7E-20 137.0 11.6 192 178-378 59-258 (447)
33 PRK13347 coproporphyrinogen II 99.7 1.5E-15 3.8E-20 135.8 12.2 191 175-376 50-250 (453)
34 PRK07094 biotin synthase; Prov 99.6 4.2E-15 1.1E-19 132.5 12.4 193 177-386 40-235 (323)
35 COG0635 HemN Coproporphyrinoge 99.6 9.6E-15 2.4E-19 129.8 13.1 219 175-403 34-266 (416)
36 PRK00955 hypothetical protein; 99.6 1.7E-15 4.2E-20 135.5 9.1 198 180-378 295-526 (599)
37 PRK01254 hypothetical protein; 99.6 1.5E-15 3.8E-20 135.8 8.8 239 180-419 376-673 (742)
38 PRK09249 coproporphyrinogen II 99.6 4.2E-15 1.1E-19 132.5 11.1 189 175-375 51-250 (456)
39 TIGR01212 TIGR01212 radical SA 99.6 2.1E-15 5.3E-20 134.7 9.4 185 180-378 22-228 (307)
40 PRK08629 coproporphyrinogen II 99.6 6.5E-15 1.6E-19 131.1 10.7 191 173-376 41-236 (424)
41 COG1242 Predicted Fe-S oxidore 99.6 1.3E-14 3.2E-19 128.9 8.4 179 189-379 45-232 (312)
42 PRK06256 biotin synthase; Vali 99.4 1.2E-11 3.1E-16 106.6 11.5 195 177-387 57-256 (325)
43 PRK06267 hypothetical protein; 99.4 1.4E-11 3.6E-16 106.1 11.8 186 177-386 28-222 (324)
44 COG2100 Predicted Fe-S oxidore 99.2 3E-09 7.7E-14 88.7 18.2 268 179-468 108-414 (414)
45 COG1243 ELP3 Histone acetyltra 99.2 8.5E-11 2.2E-15 100.3 10.0 188 178-378 66-300 (515)
46 PRK08508 biotin synthase; Prov 99.2 2.4E-10 6.1E-15 97.0 10.7 191 178-387 8-206 (279)
47 TIGR00538 hemN oxygen-independ 99.2 6.1E-10 1.5E-14 93.9 10.8 217 185-415 60-291 (462)
48 COG0502 BioB Biotin synthase a 99.1 3.9E-09 9.9E-14 87.9 12.1 190 177-386 51-249 (335)
49 TIGR00539 hemN_rel putative ox 99.0 4.4E-09 1.1E-13 87.6 9.5 199 178-388 3-220 (371)
50 TIGR02666 moaA molybdenum cofa 98.9 1.3E-07 3.2E-12 76.6 13.2 199 176-391 8-220 (346)
51 PRK00164 moaA molybdenum cofac 98.9 1.5E-07 3.7E-12 76.2 13.4 194 180-391 21-221 (334)
52 PRK06245 cofG FO synthase subu 98.9 3.3E-08 8.4E-13 81.0 9.9 191 178-379 14-220 (336)
53 PRK13361 molybdenum cofactor b 98.8 1.7E-07 4.4E-12 75.6 13.3 194 180-391 18-215 (329)
54 COG0320 LipA Lipoate synthase 98.8 3.8E-08 9.8E-13 80.5 9.5 213 174-404 68-282 (306)
55 TIGR03551 F420_cofH 7,8-dideme 98.8 3.1E-08 7.9E-13 81.2 8.8 189 178-377 41-244 (343)
56 PRK05481 lipoyl synthase; Prov 98.8 3.3E-08 8.3E-13 81.0 8.0 209 174-401 50-262 (289)
57 PRK12928 lipoyl synthase; Prov 98.8 4E-08 1E-12 80.4 8.2 210 174-401 58-270 (290)
58 COG2896 MoaA Molybdenum cofact 98.7 3.9E-07 9.9E-12 73.0 11.9 195 180-393 15-214 (322)
59 COG0731 Fe-S oxidoreductases [ 98.7 1.5E-07 3.9E-12 76.0 9.5 173 185-377 33-221 (296)
60 TIGR03550 F420_cofG 7,8-dideme 98.7 8.3E-08 2.1E-12 78.0 7.9 186 178-379 6-217 (322)
61 PRK07360 FO synthase subunit 2 98.7 1.5E-07 3.7E-12 76.2 9.0 193 178-379 62-272 (375)
62 PRK05301 pyrroloquinoline quin 98.6 1.5E-06 3.9E-11 68.5 12.2 178 175-370 16-197 (375)
63 COG1060 ThiH Thiamine biosynth 98.6 2.7E-07 6.8E-12 74.2 8.3 188 178-378 61-267 (370)
64 PRK05927 hypothetical protein; 98.5 1E-06 2.6E-11 69.9 9.1 182 179-376 48-249 (350)
65 PRK08444 hypothetical protein; 98.4 1.8E-06 4.5E-11 68.1 9.1 178 179-370 52-243 (353)
66 COG1509 KamA Lysine 2,3-aminom 98.4 1.3E-06 3.4E-11 69.0 8.3 167 175-370 110-287 (369)
67 PRK09234 fbiC FO synthase; Rev 98.4 5.4E-07 1.4E-11 71.9 5.8 176 180-371 534-725 (846)
68 PRK08445 hypothetical protein; 98.4 2.3E-06 5.9E-11 67.2 8.5 178 179-370 45-236 (348)
69 PRK11194 hypothetical protein; 98.3 3.2E-05 8.3E-10 58.7 13.3 182 174-374 101-306 (372)
70 COG2516 Biotin synthase-relate 98.3 5.1E-06 1.3E-10 64.7 8.7 225 174-419 27-272 (339)
71 COG1244 Predicted Fe-S oxidore 98.3 1.3E-05 3.4E-10 61.6 10.1 170 176-352 48-231 (358)
72 PRK09234 fbiC FO synthase; Rev 98.2 6.4E-06 1.6E-10 63.9 7.9 194 178-379 77-290 (846)
73 pfam01938 TRAM TRAM domain. Th 98.2 8.1E-06 2.1E-10 63.2 7.4 59 407-468 1-59 (59)
74 COG1856 Uncharacterized homolo 98.2 4.8E-05 1.2E-09 57.4 11.0 183 179-379 11-200 (275)
75 PRK05926 hypothetical protein; 98.2 1.4E-05 3.5E-10 61.4 8.2 182 180-376 73-272 (371)
76 PRK11145 pflA pyruvate formate 98.1 9.6E-05 2.4E-09 55.1 11.9 213 160-393 10-235 (246)
77 KOG2672 consensus 98.1 1.1E-05 2.8E-10 62.2 6.8 179 178-371 112-296 (360)
78 TIGR00510 lipA lipoic acid syn 98.0 1.2E-05 3E-10 62.0 5.7 219 171-404 64-284 (310)
79 TIGR00433 bioB biotin synthase 98.0 2.6E-05 6.5E-10 59.4 7.4 187 178-380 33-269 (350)
80 COG0820 Predicted Fe-S-cluster 98.0 0.00045 1.2E-08 50.1 13.1 190 174-379 99-303 (349)
81 COG0535 Predicted Fe-S oxidore 98.0 0.0003 7.6E-09 51.5 11.9 179 175-370 18-198 (347)
82 TIGR00423 TIGR00423 conserved 97.9 6.4E-05 1.6E-09 56.5 7.8 185 183-376 12-224 (331)
83 TIGR03470 HpnH hopanoid biosyn 97.9 0.00027 7E-09 51.7 10.7 172 175-368 27-201 (318)
84 PRK13758 anaerobic sulfatase-m 97.9 0.00063 1.6E-08 49.1 12.2 170 179-366 8-193 (370)
85 COG1533 SplB DNA repair photol 97.6 0.00099 2.5E-08 47.6 10.1 184 178-373 31-227 (297)
86 TIGR01211 ELP3 histone acetylt 97.6 0.00016 4E-09 53.6 5.7 193 178-378 68-352 (573)
87 COG1625 Fe-S oxidoreductase, r 97.5 0.00085 2.2E-08 48.1 8.9 208 184-406 35-249 (414)
88 TIGR03365 Bsubt_queE 7-cyano-7 97.5 0.0015 3.8E-08 46.3 9.8 72 176-257 23-99 (238)
89 COG4277 Predicted DNA-binding 97.5 0.00063 1.6E-08 49.0 7.6 197 180-390 56-276 (404)
90 KOG2900 consensus 97.4 0.00012 3E-09 54.4 2.9 180 179-377 86-277 (380)
91 cd02068 radical_SAM_B12_BD B12 97.3 0.0025 6.3E-08 44.6 9.2 74 61-146 39-113 (127)
92 TIGR02495 NrdG2 anaerobic ribo 97.3 0.0017 4.3E-08 45.9 7.8 169 162-358 7-207 (220)
93 COG1180 PflA Pyruvate-formate 97.3 0.018 4.7E-07 38.1 13.1 178 179-380 38-221 (260)
94 PRK13745 anaerobic sulfatase-m 97.2 0.0061 1.6E-07 41.7 9.9 226 173-420 10-263 (412)
95 COG0641 AslB Arylsulfatase reg 97.1 0.0095 2.4E-07 40.3 9.8 196 186-397 18-222 (378)
96 PRK13762 tRNA-modifying enzyme 97.0 0.0068 1.7E-07 41.3 8.8 171 183-366 65-257 (321)
97 TIGR00048 TIGR00048 radical SA 96.8 0.012 3E-07 39.6 8.5 189 177-375 122-326 (378)
98 pfam02310 B12-binding B12 bind 96.8 0.0047 1.2E-07 42.5 6.1 69 61-139 51-120 (121)
99 TIGR02493 PFLA pyruvate format 96.7 0.013 3.4E-07 39.1 8.3 209 160-393 5-238 (243)
100 TIGR03279 cyano_FeS_chp putati 96.7 0.015 3.8E-07 38.8 8.3 133 273-420 126-270 (433)
101 PRK09240 thiH thiamine biosynt 96.7 0.0094 2.4E-07 40.3 7.1 147 178-340 76-228 (371)
102 TIGR03278 methan_mark_10 putat 96.5 0.039 9.9E-07 35.7 9.6 193 189-406 38-244 (404)
103 COG1313 PflX Uncharacterized F 96.4 0.016 4E-07 38.6 6.8 169 183-379 125-306 (335)
104 COG0602 NrdG Organic radical a 96.2 0.0034 8.6E-08 43.6 2.8 71 176-257 23-98 (212)
105 TIGR02668 moaA_archaeal probab 96.1 0.059 1.5E-06 34.3 8.7 201 180-401 14-232 (324)
106 PRK09613 thiH thiamine biosynt 95.9 0.048 1.2E-06 35.0 7.3 149 180-339 88-244 (471)
107 COG2108 Uncharacterized conser 95.7 0.024 6E-07 37.3 5.2 159 178-365 30-199 (353)
108 TIGR02351 thiH thiazole biosyn 94.3 0.03 7.6E-07 36.5 2.3 48 179-228 76-129 (378)
109 TIGR00238 TIGR00238 lysine 2,3 94.1 0.066 1.7E-06 34.0 3.9 135 175-332 130-277 (357)
110 cd02065 B12-binding_like B12 b 94.0 0.42 1.1E-05 28.0 7.7 84 43-141 18-116 (125)
111 PRK10076 pyruvate formate lyas 93.2 0.45 1.2E-05 27.7 6.8 149 203-370 17-170 (213)
112 PRK12336 translation initiatio 92.5 0.68 1.7E-05 26.4 6.9 55 410-468 147-201 (201)
113 TIGR02494 PFLE_PFLC glycyl-rad 92.4 0.69 1.8E-05 26.4 6.8 63 309-373 201-270 (305)
114 cd02071 MM_CoA_mut_B12_BD meth 92.0 1.1 2.7E-05 24.9 10.5 104 27-142 2-119 (122)
115 KOG2876 consensus 91.8 0.17 4.2E-06 31.0 3.0 58 178-235 11-73 (323)
116 PRK02261 methylaspartate mutas 90.8 1.4 3.6E-05 24.0 10.6 100 25-132 4-121 (137)
117 TIGR01290 nifB nitrogenase cof 90.8 1.4 3.6E-05 24.0 9.7 204 180-402 28-256 (461)
118 PRK09426 methylmalonyl-CoA mut 90.4 1.5 3.9E-05 23.8 7.4 17 407-423 576-592 (715)
119 TIGR02109 PQQ_syn_pqqE coenzym 90.3 1.5 3.9E-05 23.7 8.7 203 180-418 11-228 (363)
120 COG4956 Integral membrane prot 90.2 0.96 2.5E-05 25.3 5.7 137 297-459 202-342 (356)
121 pfam00682 HMGL-like HMGL-like. 90.0 1.6 4.2E-05 23.5 8.2 27 30-56 5-31 (237)
122 TIGR01578 MiaB-like-B MiaB-lik 89.7 0.2 5.1E-06 30.3 1.9 65 404-468 370-434 (487)
123 COG5014 Predicted Fe-S oxidore 89.3 0.26 6.7E-06 29.5 2.3 45 183-229 48-99 (228)
124 PRK05692 hydroxymethylglutaryl 88.2 2.1 5.5E-05 22.7 7.9 35 23-57 1-44 (287)
125 PRK13210 putative L-xylulose 5 87.9 2.2 5.7E-05 22.6 6.4 171 180-365 66-253 (284)
126 PRK03501 ppnK inorganic polyph 87.9 1.5 3.7E-05 23.9 5.3 31 40-70 18-48 (264)
127 cd02072 Glm_B12_BD B12 binding 87.9 2.2 5.7E-05 22.5 8.3 91 41-141 16-124 (128)
128 PRK13168 rumA 23S rRNA 5-methy 86.0 2.8 7.1E-05 21.8 8.8 12 207-218 176-187 (440)
129 cd02067 B12-binding B12 bindin 85.6 2.9 7.5E-05 21.7 6.9 82 41-132 16-111 (119)
130 PRK13731 conjugal transfer sur 85.2 1.3 3.3E-05 24.4 3.9 41 25-66 51-94 (243)
131 COG3269 Predicted RNA-binding 84.5 3.3 8.3E-05 21.3 6.7 55 410-468 15-69 (73)
132 cd01301 rDP_like renal dipepti 83.3 3.6 9.2E-05 21.0 7.5 65 264-335 199-265 (309)
133 KOG2535 consensus 82.9 1.9 4.9E-05 23.1 3.9 100 270-373 231-333 (554)
134 KOG3799 consensus 82.4 0.35 9E-06 28.5 0.0 20 180-199 74-94 (169)
135 TIGR01210 TIGR01210 conserved 78.9 5 0.00013 19.9 6.5 190 182-375 22-229 (329)
136 smart00518 AP2Ec AP endonuclea 78.2 4.9 0.00013 20.0 4.7 26 202-227 78-103 (273)
137 COG2355 Zn-dependent dipeptida 76.8 5.7 0.00015 19.5 6.8 143 182-357 135-285 (313)
138 PRK00915 2-isopropylmalate syn 76.4 5.8 0.00015 19.4 8.1 28 30-57 17-44 (511)
139 cd01965 Nitrogenase_MoFe_beta_ 74.8 4.5 0.00011 20.3 3.8 69 31-120 30-103 (428)
140 PRK12328 nusA transcription el 73.9 6.7 0.00017 19.0 8.2 11 170-180 177-187 (375)
141 pfam05818 TraT Enterobacterial 73.0 3.4 8.7E-05 21.2 2.8 40 25-66 22-64 (215)
142 cd01972 Nitrogenase_VnfE_like 71.0 3.5 9E-05 21.1 2.5 75 31-119 32-110 (426)
143 COG0685 MetF 5,10-methylenetet 70.8 7.6 0.00019 18.6 4.2 122 195-339 81-210 (291)
144 cd01966 Nitrogenase_NifN_1 Nit 70.1 5.7 0.00015 19.5 3.4 68 31-119 30-102 (417)
145 cd01968 Nitrogenase_NifE_I Nit 69.6 4.5 0.00011 20.3 2.8 71 31-119 32-107 (410)
146 KOG0916 consensus 69.2 4.8 0.00012 20.1 2.9 90 181-275 1047-1156(1679)
147 TIGR01358 DAHP_synth_II 3-deox 68.7 4.2 0.00011 20.5 2.5 44 340-388 294-338 (450)
148 cd01974 Nitrogenase_MoFe_beta 68.2 6.9 0.00018 18.9 3.5 69 31-120 34-107 (435)
149 PRK13209 L-xylulose 5-phosphat 68.2 8.8 0.00022 18.1 5.5 147 201-361 92-248 (283)
150 PRK10494 hypothetical protein; 68.2 8.8 0.00022 18.1 6.8 67 40-111 58-132 (259)
151 COG3925 N-terminal domain of t 67.9 5.8 0.00015 19.5 3.1 46 31-76 10-55 (103)
152 COG3260 Ni,Fe-hydrogenase III 67.8 4.5 0.00011 20.3 2.5 39 33-79 28-66 (148)
153 cd01971 Nitrogenase_VnfN_like 66.2 3.3 8.5E-05 21.3 1.6 43 72-120 66-108 (427)
154 pfam08013 Tagatose_6_P_K Tagat 65.3 9.9 0.00025 17.7 6.4 43 61-108 41-90 (424)
155 pfam03016 Exostosin Exostosin 63.9 11 0.00027 17.5 5.0 52 24-75 4-74 (289)
156 cd03466 Nitrogenase_NifN_2 Nit 62.5 11 0.00028 17.4 3.8 69 31-120 33-106 (429)
157 KOG0924 consensus 62.3 3.6 9.3E-05 21.0 1.2 13 184-196 642-654 (1042)
158 PRK11858 aksA trans-homoaconit 62.0 11 0.00029 17.3 7.6 28 30-57 17-44 (378)
159 COG5309 Exo-beta-1,3-glucanase 61.9 8.1 0.00021 18.4 2.9 197 191-431 47-250 (305)
160 TIGR03234 OH-pyruv-isom hydrox 60.8 12 0.0003 17.2 3.8 39 338-376 211-249 (254)
161 cd04740 DHOD_1B_like Dihydroor 59.1 13 0.00032 16.9 5.7 28 384-411 267-294 (296)
162 PRK06464 phosphoenolpyruvate s 59.0 7 0.00018 18.8 2.2 12 405-416 563-574 (794)
163 pfam01058 Oxidored_q6 NADH ubi 58.3 13 0.00033 16.9 4.5 68 33-110 3-79 (124)
164 TIGR02491 NrdG anaerobic ribon 58.2 8 0.00021 18.4 2.4 77 183-269 22-108 (158)
165 cd06564 GH20_DspB_LnbB-like Gl 58.1 4.7 0.00012 20.1 1.2 18 206-223 80-97 (326)
166 cd01967 Nitrogenase_MoFe_alpha 57.9 9.3 0.00024 17.9 2.6 39 75-119 70-108 (406)
167 PRK10425 DNase TatD; Provision 57.8 5.9 0.00015 19.4 1.6 28 337-364 171-200 (258)
168 PRK11121 nrdG anaerobic ribonu 56.4 11 0.00027 17.5 2.7 64 183-256 23-94 (154)
169 cd02803 OYE_like_FMN_family Ol 56.3 11 0.00028 17.4 2.8 20 212-231 145-164 (327)
170 TIGR00695 uxuA mannonate dehyd 55.8 12 0.00031 17.0 3.0 119 203-358 80-206 (396)
171 cd01976 Nitrogenase_MoFe_alpha 55.5 14 0.00037 16.5 4.0 72 31-119 40-120 (421)
172 pfam06002 CST-I Alpha-2,3-sial 55.0 7.9 0.0002 18.4 1.9 83 216-305 139-236 (291)
173 cd04733 OYE_like_2_FMN Old yel 54.3 13 0.00032 16.9 2.8 26 206-231 143-172 (338)
174 pfam04748 Polysacc_deac_2 Dive 54.2 15 0.00038 16.4 4.2 16 205-220 71-86 (213)
175 CHL00200 trpA tryptophan synth 53.6 15 0.00039 16.3 3.2 18 335-352 205-222 (263)
176 PRK09202 nusA transcription el 53.4 15 0.00039 16.3 8.0 12 170-181 173-184 (428)
177 PRK09401 reverse gyrase; Revie 53.0 16 0.0004 16.2 3.3 32 189-227 693-724 (1176)
178 pfam04016 DUF364 Domain of unk 52.3 10 0.00026 17.6 2.1 35 178-215 24-68 (229)
179 PRK12858 tagatose 1,6-diphosph 52.0 16 0.00041 16.1 4.0 95 309-413 225-331 (340)
180 cd02742 GH20_hexosaminidase Be 51.8 7.2 0.00018 18.8 1.2 16 207-222 71-86 (303)
181 TIGR01182 eda 2-dehydro-3-deox 51.3 16 0.0004 16.2 2.9 21 37-57 18-38 (205)
182 TIGR00676 fadh2 5,10-methylene 51.2 17 0.00042 16.0 5.3 127 207-356 87-236 (302)
183 pfam00148 Oxidored_nitro Nitro 51.1 17 0.00042 16.0 4.0 75 30-120 22-96 (398)
184 cd00537 MTHFR Methylenetetrahy 51.1 17 0.00042 16.0 5.5 21 208-228 73-93 (274)
185 COG2014 Uncharacterized conser 51.0 17 0.00043 16.0 3.4 31 287-323 161-191 (250)
186 pfam02906 Fe_hyd_lg_C Iron onl 50.4 15 0.00037 16.5 2.6 26 31-57 29-54 (286)
187 pfam00540 Gag_p17 gag gene pro 49.7 14 0.00036 16.6 2.5 93 221-324 1-105 (140)
188 TIGR01953 NusA transcription t 49.7 17 0.00045 15.9 8.4 118 309-461 77-206 (366)
189 TIGR01169 rplA_bact ribosomal 49.5 18 0.00045 15.9 5.7 72 247-327 115-199 (227)
190 cd00316 Oxidoreductase_nitroge 48.8 18 0.00046 15.8 3.2 76 29-121 27-103 (399)
191 PRK13134 consensus 48.7 18 0.00046 15.8 3.4 32 314-350 193-224 (257)
192 cd02932 OYE_YqiM_FMN Old yello 48.6 17 0.00043 16.0 2.8 18 214-231 160-177 (336)
193 PRK13121 consensus 48.4 18 0.00047 15.7 3.3 35 313-352 191-225 (265)
194 pfam04481 DUF561 Protein of un 48.0 18 0.00047 15.7 7.1 80 246-340 51-130 (243)
195 PRK13132 consensus 47.8 15 0.00037 16.5 2.3 15 335-349 198-212 (246)
196 PRK08318 dihydropyrimidine deh 47.5 19 0.00048 15.6 5.7 22 207-228 179-200 (413)
197 TIGR03559 F420_Rv3520c probabl 47.4 16 0.00041 16.2 2.5 21 36-56 10-30 (325)
198 COG1647 Esterase/lipase [Gener 47.2 11 0.00029 17.2 1.7 27 207-233 69-95 (243)
199 TIGR01679 bact_FAD_ox FAD-link 46.8 16 0.00042 16.1 2.4 149 190-372 171-349 (426)
200 COG2185 Sbm Methylmalonyl-CoA 46.1 20 0.0005 15.5 8.1 104 24-140 12-130 (143)
201 cd01977 Nitrogenase_VFe_alpha 46.1 18 0.00047 15.7 2.6 40 75-119 70-109 (415)
202 cd02070 corrinoid_protein_B12- 44.7 21 0.00053 15.4 5.8 27 311-339 146-172 (201)
203 PRK13113 consensus 44.3 15 0.00038 16.4 1.9 36 313-353 191-226 (263)
204 PRK12327 nusA transcription el 44.2 21 0.00053 15.3 8.4 14 407-420 329-342 (353)
205 cd04738 DHOD_2_like Dihydrooro 44.0 21 0.00054 15.3 6.3 85 313-397 183-272 (327)
206 PRK04161 tagatose 1,6-diphosph 43.7 21 0.00054 15.2 2.9 87 310-406 225-323 (326)
207 PRK10508 hypothetical protein; 43.6 21 0.00055 15.2 7.0 24 326-352 217-240 (333)
208 TIGR01010 BexC_CtrB_KpsE polys 43.5 21 0.00055 15.2 3.2 10 394-403 300-309 (364)
209 cd00019 AP2Ec AP endonuclease 43.0 22 0.00056 15.2 4.5 26 202-227 79-104 (279)
210 COG2403 Predicted GTPase [Gene 43.0 22 0.00056 15.2 4.4 62 311-374 282-361 (449)
211 cd04735 OYE_like_4_FMN Old yel 42.9 22 0.00056 15.2 4.0 79 212-294 148-255 (353)
212 pfam01700 Orbi_VP3 Orbivirus V 42.9 22 0.00056 15.2 5.0 26 196-223 474-499 (890)
213 PRK10712 fructose-specific PTS 42.7 22 0.00056 15.1 4.2 45 31-75 6-54 (563)
214 KOG1838 consensus 42.7 22 0.00056 15.1 4.6 32 333-365 296-329 (409)
215 cd04824 eu_ALAD_PBGS_cysteine_ 41.9 20 0.00051 15.4 2.3 28 316-343 222-249 (320)
216 KOG2126 consensus 41.5 23 0.00058 15.0 2.6 74 36-112 187-264 (895)
217 pfam01973 MAF_flag10 Protein o 41.5 16 0.00042 16.1 1.8 25 209-233 140-165 (169)
218 PRK07534 methionine synthase I 41.1 23 0.00059 15.0 6.8 41 311-357 256-296 (335)
219 cd02172 RfaE_N RfaE is a prote 41.0 20 0.00051 15.4 2.2 27 283-310 26-52 (143)
220 TIGR00692 tdh L-threonine 3-de 40.4 22 0.00056 15.1 2.3 92 244-358 241-333 (341)
221 cd01973 Nitrogenase_VFe_beta_l 40.4 24 0.00061 14.9 3.4 51 56-119 58-108 (454)
222 CHL00023 ndhK NADH dehydrogena 40.4 24 0.00061 14.9 3.6 66 34-109 44-109 (225)
223 COG2517 Predicted RNA-binding 40.3 8.8 0.00022 18.1 0.2 36 244-281 34-71 (219)
224 TIGR02885 spore_sigF RNA polym 40.2 22 0.00057 15.1 2.3 141 201-385 15-164 (231)
225 KOG1412 consensus 40.0 24 0.00061 14.8 2.6 58 243-301 161-229 (410)
226 PRK13127 consensus 39.6 24 0.00062 14.8 3.4 25 29-54 16-40 (262)
227 TIGR00461 gcvP glycine dehydro 39.3 5.8 0.00015 19.5 -0.8 67 299-370 474-543 (965)
228 COG3589 Uncharacterized conser 39.2 25 0.00063 14.8 2.8 18 38-55 15-32 (360)
229 TIGR01393 lepA GTP-binding pro 39.0 25 0.00063 14.7 4.0 73 109-187 135-218 (598)
230 pfam09370 TIM-br_sig_trns TIM- 38.8 25 0.00064 14.7 6.8 171 179-386 75-256 (268)
231 PRK08356 hypothetical protein; 38.7 25 0.00064 14.7 3.7 25 333-358 169-194 (195)
232 COG0107 HisF Imidazoleglycerol 38.6 25 0.00064 14.7 7.1 137 58-232 40-179 (256)
233 cd04823 ALAD_PBGS_aspartate_ri 38.5 24 0.00062 14.8 2.3 35 195-230 42-76 (320)
234 KOG2086 consensus 38.3 16 0.0004 16.3 1.2 59 291-352 308-366 (380)
235 PRK04885 ppnK inorganic polyph 38.1 26 0.00065 14.6 4.6 43 25-69 1-43 (265)
236 TIGR00839 aspA aspartate ammon 38.0 26 0.00066 14.6 3.1 78 194-285 190-270 (469)
237 KOG0434 consensus 37.9 26 0.00066 14.6 2.4 48 314-365 825-875 (1070)
238 TIGR02700 flavo_MJ0208 archaeo 37.6 26 0.00066 14.6 4.5 117 78-232 14-132 (237)
239 TIGR01828 pyru_phos_dikin pyru 37.5 14 0.00035 16.7 0.8 134 268-416 632-794 (920)
240 PRK00109 Holliday junction res 37.4 26 0.00067 14.6 2.6 53 316-374 44-101 (141)
241 COG0523 Putative GTPases (G3E 37.1 27 0.00068 14.5 4.3 10 179-188 55-64 (323)
242 TIGR02172 Fb_sc_TIGR02172 Fibr 37.1 27 0.00068 14.5 2.5 68 264-335 89-165 (234)
243 KOG1490 consensus 36.8 27 0.00068 14.5 2.9 11 179-189 254-264 (620)
244 PRK13138 consensus 36.3 26 0.00067 14.6 2.1 27 27-54 16-42 (264)
245 PRK09283 delta-aminolevulinic 36.1 27 0.0007 14.4 2.4 35 195-230 47-81 (321)
246 KOG1021 consensus 36.1 27 0.0007 14.4 3.3 16 220-235 214-229 (464)
247 COG0113 HemB Delta-aminolevuli 35.5 28 0.00071 14.4 2.4 37 194-231 48-84 (330)
248 PRK13119 consensus 35.5 28 0.00072 14.3 3.8 38 311-353 187-224 (261)
249 KOG2648 consensus 35.2 28 0.00072 14.3 3.1 18 338-355 355-372 (453)
250 PRK01372 ddl D-alanine--D-alan 34.9 18 0.00046 15.8 1.1 35 22-56 2-40 (304)
251 cd00384 ALAD_PBGS Porphobilino 34.6 29 0.00074 14.2 2.3 33 196-229 40-72 (314)
252 cd04734 OYE_like_3_FMN Old yel 34.3 29 0.00075 14.2 2.7 20 212-231 145-164 (343)
253 pfam00490 ALAD Delta-aminolevu 34.1 29 0.00075 14.2 2.2 35 195-230 45-79 (322)
254 PRK06762 hypothetical protein; 34.1 29 0.00075 14.2 2.7 128 198-344 7-144 (166)
255 pfam05049 IIGP Interferon-indu 34.0 28 0.0007 14.4 1.9 54 199-262 160-222 (375)
256 PRK09989 hypothetical protein; 33.9 30 0.00076 14.2 2.7 39 338-376 212-250 (258)
257 TIGR01316 gltA glutamate synth 33.7 21 0.00055 15.2 1.3 69 293-365 235-313 (462)
258 KOG2918 consensus 33.7 26 0.00067 14.6 1.8 19 99-117 87-105 (335)
259 PRK06843 inositol-5-monophosph 33.6 30 0.00076 14.1 4.8 14 178-191 217-230 (404)
260 KOG1122 consensus 33.5 30 0.00077 14.1 4.0 106 302-420 259-378 (460)
261 PTZ00149 hypoxanthine phosphor 33.3 30 0.00077 14.1 2.4 68 179-256 18-92 (231)
262 cd02017 TPP_E1_EcPDC_like Thia 33.2 30 0.00077 14.1 3.4 124 208-345 198-330 (386)
263 PRK06180 short chain dehydroge 33.1 30 0.00077 14.1 2.0 32 22-56 1-32 (277)
264 KOG4306 consensus 32.9 31 0.00078 14.1 2.8 69 180-259 85-156 (306)
265 PRK13384 delta-aminolevulinic 32.6 31 0.00079 14.0 2.3 25 206-230 60-84 (323)
266 TIGR01017 rpsD_bact ribosomal 32.5 31 0.00079 14.0 2.5 11 289-299 34-44 (217)
267 TIGR00106 TIGR00106 conserved 32.3 29 0.00075 14.2 1.9 32 192-223 5-38 (103)
268 PRK12557 H(2)-dependent methyl 32.2 31 0.0008 14.0 4.1 42 297-358 251-292 (341)
269 pfam03709 OKR_DC_1_N Orn/Lys/A 32.1 32 0.0008 14.0 3.1 67 39-119 4-84 (111)
270 pfam07293 DUF1450 Protein of u 31.9 18 0.00046 15.8 0.7 39 182-220 32-74 (78)
271 PRK03906 mannonate dehydratase 31.7 32 0.00081 13.9 4.5 20 311-330 250-269 (389)
272 PRK06411 NADH dehydrogenase su 31.7 32 0.00082 13.9 5.1 28 47-75 66-93 (195)
273 PRK13118 consensus 31.4 32 0.00083 13.9 3.4 37 312-353 190-226 (269)
274 pfam02364 Glucan_synthase 1,3- 31.3 23 0.00059 15.0 1.2 115 182-307 272-419 (817)
275 TIGR00069 hisD histidinol dehy 31.3 32 0.00083 13.9 4.6 27 344-370 313-339 (435)
276 COG3855 Fbp Uncharacterized pr 31.1 30 0.00078 14.1 1.8 17 189-205 120-136 (648)
277 pfam05853 DUF849 Prokaryotic p 30.8 33 0.00084 13.8 5.6 23 206-228 24-46 (274)
278 PTZ00170 D-ribulose-5-phosphat 30.4 34 0.00086 13.8 3.9 130 204-374 10-149 (224)
279 pfam00728 Glyco_hydro_20 Glyco 30.3 34 0.00086 13.8 2.0 20 204-223 66-85 (335)
280 TIGR00824 EIIA-man PTS system, 30.1 34 0.00086 13.7 2.5 38 191-232 29-67 (117)
281 TIGR01360 aden_kin_iso1 adenyl 30.0 34 0.00087 13.7 3.3 98 297-400 44-157 (191)
282 KOG3002 consensus 29.8 31 0.0008 14.0 1.7 38 187-226 80-120 (299)
283 cd01823 SEST_like SEST_like. A 29.6 34 0.00087 13.7 1.8 31 313-346 131-161 (259)
284 TIGR00269 TIGR00269 conserved 29.5 35 0.00088 13.7 2.1 54 288-341 31-91 (106)
285 TIGR03621 F420_MSMEG_2516 prob 29.5 35 0.00088 13.7 2.1 30 26-56 2-31 (295)
286 KOG0065 consensus 29.4 35 0.00089 13.7 3.8 117 293-415 797-928 (1391)
287 TIGR03554 F420_G6P_DH glucose- 29.4 35 0.00089 13.6 2.5 40 310-357 286-326 (331)
288 TIGR00928 purB adenylosuccinat 29.3 35 0.00089 13.6 3.5 86 194-281 166-258 (469)
289 cd04747 OYE_like_5_FMN Old yel 29.3 35 0.00089 13.6 2.7 61 206-267 138-220 (361)
290 KOG4241 consensus 29.2 35 0.00089 13.6 2.4 36 293-333 140-175 (245)
291 TIGR01405 polC_Gram_pos DNA po 28.7 35 0.00089 13.6 1.7 19 212-230 660-678 (1264)
292 TIGR02176 pyruv_ox_red pyruvat 28.7 11 0.00027 17.5 -0.9 34 384-418 942-978 (1194)
293 PRK13114 consensus 28.5 36 0.00092 13.5 2.9 36 313-353 187-222 (266)
294 TIGR01926 peroxid_rel uncharac 28.5 30 0.00075 14.2 1.3 63 180-259 70-132 (179)
295 TIGR03557 F420_G6P_family F420 28.2 36 0.00093 13.5 2.7 14 311-324 271-284 (316)
296 PRK13120 consensus 28.1 36 0.00093 13.5 3.4 39 311-354 193-231 (285)
297 pfam01645 Glu_synthase Conserv 28.0 37 0.00093 13.5 2.7 60 310-377 184-243 (367)
298 PRK13669 hypothetical protein; 28.0 23 0.00059 14.9 0.7 39 182-220 32-74 (78)
299 COG2015 Alkyl sulfatase and re 27.8 24 0.00062 14.8 0.8 39 275-320 355-393 (655)
300 cd00245 Glm_e Coenzyme B12-dep 27.8 37 0.00094 13.5 3.1 20 190-214 130-149 (428)
301 PRK13116 consensus 27.7 32 0.00081 14.0 1.4 15 335-349 209-223 (278)
302 PRK10401 DNA-binding transcrip 27.5 37 0.00095 13.4 4.7 20 212-231 166-185 (346)
303 TIGR02041 CysI sulfite reducta 27.4 19 0.00048 15.7 0.2 82 328-420 379-467 (550)
304 cd06271 PBP1_AglR_RafR_like Li 27.4 38 0.00096 13.4 4.4 21 212-232 110-130 (268)
305 KOG1522 consensus 27.3 16 0.00042 16.1 -0.1 13 186-198 88-100 (285)
306 PRK09271 flavodoxin; Provision 27.2 38 0.00096 13.4 6.0 70 41-116 18-101 (160)
307 TIGR03564 F420_MSMEG_4879 F420 27.0 38 0.00097 13.4 2.2 14 207-220 99-112 (265)
308 TIGR01978 sufC FeS assembly AT 27.0 38 0.00097 13.4 1.7 46 315-377 186-231 (248)
309 KOG2749 consensus 26.8 38 0.00098 13.3 4.5 23 230-258 217-239 (415)
310 PRK05581 ribulose-phosphate 3- 26.8 38 0.00098 13.3 7.7 164 202-420 10-177 (220)
311 cd01173 pyridoxal_pyridoxamine 26.7 38 0.00098 13.3 3.1 28 206-233 157-184 (254)
312 PRK13124 consensus 26.0 40 0.001 13.2 3.2 15 335-349 198-212 (257)
313 PRK09193 indolepyruvate ferred 25.6 40 0.001 13.2 3.0 27 384-410 946-972 (1155)
314 PRK13123 consensus 25.5 40 0.001 13.2 3.1 36 313-353 186-221 (256)
315 TIGR01515 branching_enzym 1,4- 25.4 41 0.001 13.2 4.5 134 190-342 298-448 (608)
316 COG0351 ThiD Hydroxymethylpyri 25.1 41 0.001 13.1 2.9 22 335-356 145-167 (263)
317 TIGR00693 thiE thiamine-phosph 25.0 41 0.001 13.1 5.2 131 207-358 14-160 (210)
318 pfam05172 MPPN MPPN (rrm-like) 25.0 40 0.001 13.2 1.5 19 319-339 57-75 (87)
319 cd01981 Pchlide_reductase_B Pc 24.9 41 0.0011 13.1 4.1 40 75-120 68-107 (430)
320 PRK11784 tRNA 2-selenouridine 24.9 28 0.0007 14.4 0.6 33 187-223 90-125 (333)
321 pfam03464 eRF1_2 eRF1 domain 2 24.8 41 0.0011 13.1 3.2 42 315-356 56-97 (131)
322 PRK13131 consensus 24.7 42 0.0011 13.1 2.4 27 28-55 15-41 (257)
323 PRK13135 consensus 24.6 42 0.0011 13.1 3.4 32 314-350 191-222 (267)
324 cd04724 Tryptophan_synthase_al 24.6 42 0.0011 13.1 3.4 17 335-351 190-206 (242)
325 PRK05567 inositol-5'-monophosp 24.5 42 0.0011 13.0 4.9 20 208-227 227-246 (486)
326 PRK00870 haloalkane dehalogena 24.5 42 0.0011 13.0 2.0 31 205-235 96-127 (302)
327 cd06570 GH20_chitobiase-like_1 24.4 42 0.0011 13.0 1.5 18 206-223 66-83 (311)
328 cd06565 GH20_GcnA-like Glycosy 24.3 42 0.0011 13.0 2.0 52 288-339 132-191 (301)
329 PRK02271 methylenetetrahydrome 24.2 42 0.0011 13.0 6.0 51 296-354 268-319 (324)
330 COG4007 Predicted dehydrogenas 24.0 43 0.0011 13.0 2.2 13 296-308 251-263 (340)
331 PRK13117 consensus 23.6 40 0.001 13.2 1.3 36 313-353 191-226 (268)
332 PRK05225 ketol-acid reductoiso 23.6 42 0.0011 13.0 1.4 28 102-129 39-66 (489)
333 TIGR03167 tRNA_sel_U_synt tRNA 23.6 31 0.00079 14.0 0.7 33 187-223 75-110 (311)
334 KOG2412 consensus 23.4 44 0.0011 12.9 1.7 77 263-344 414-498 (591)
335 pfam06906 DUF1272 Protein of u 23.4 23 0.0006 14.9 0.0 12 184-195 23-34 (57)
336 KOG2541 consensus 23.2 44 0.0011 12.9 3.3 62 288-370 166-234 (296)
337 cd02930 DCR_FMN 2,4-dienoyl-Co 23.0 45 0.0011 12.8 5.2 26 206-231 131-160 (353)
338 TIGR02143 trmA_only tRNA (urac 23.0 34 0.00087 13.7 0.8 28 272-305 299-326 (361)
339 cd01520 RHOD_YbbB Member of th 22.9 28 0.00071 14.4 0.3 24 188-215 88-111 (128)
340 COG5238 RNA1 Ran GTPase-activa 22.8 45 0.0011 12.8 2.0 23 63-85 59-82 (388)
341 COG4294 Uve UV damage repair e 22.8 45 0.0011 12.8 2.9 19 246-264 189-207 (347)
342 PRK07328 histidinol-phosphatas 22.7 45 0.0012 12.8 2.5 48 317-366 211-258 (268)
343 COG1938 Archaeal enzymes of AT 22.6 45 0.0012 12.8 1.5 33 192-229 82-115 (244)
344 cd06568 GH20_SpHex_like A subg 22.6 45 0.0012 12.8 1.6 13 207-219 142-154 (329)
345 cd06288 PBP1_sucrose_transcrip 22.6 46 0.0012 12.8 4.5 21 212-232 106-126 (269)
346 PRK13122 consensus 22.4 46 0.0012 12.8 2.3 12 98-109 73-84 (242)
347 PRK09405 aceE pyruvate dehydro 22.4 46 0.0012 12.8 3.6 114 208-335 272-391 (886)
348 cd02069 methionine_synthase_B1 22.3 46 0.0012 12.7 6.6 77 250-349 107-185 (213)
349 TIGR01689 EcbF-BcbF capsule bi 22.3 46 0.0012 12.7 2.7 55 200-255 18-74 (126)
350 TIGR01415 trpB_rel pyridoxal-p 22.2 44 0.0011 12.9 1.3 23 204-226 102-124 (426)
351 pfam00290 Trp_syntA Tryptophan 22.2 46 0.0012 12.7 2.7 28 27-55 12-39 (258)
352 COG4470 Uncharacterized protei 22.2 32 0.00083 13.9 0.6 19 182-200 84-102 (126)
353 pfam00834 Ribul_P_3_epim Ribul 22.1 46 0.0012 12.7 7.3 163 203-420 7-173 (201)
354 cd01842 SGNH_hydrolase_like_5 22.0 47 0.0012 12.7 3.7 11 61-71 50-60 (183)
355 PRK11371 hypothetical protein; 22.0 36 0.00092 13.5 0.8 17 177-193 3-19 (126)
356 PRK10307 predicted glycosyl tr 22.0 47 0.0012 12.7 2.1 14 42-55 22-35 (415)
357 pfam03357 Snf7 Snf7. This fami 22.0 44 0.0011 12.9 1.2 57 297-353 88-148 (169)
358 TIGR03565 alk_sulf_monoox alka 21.8 47 0.0012 12.7 2.8 42 39-87 53-95 (346)
359 pfam03808 Glyco_tran_WecB Glyc 21.8 47 0.0012 12.7 2.7 45 317-364 63-107 (172)
360 PRK05286 dihydroorotate dehydr 21.8 47 0.0012 12.7 6.1 62 335-396 211-276 (336)
361 TIGR02153 gatD_arch glutamyl-t 21.8 47 0.0012 12.7 2.0 29 96-124 63-104 (413)
362 pfam06838 Alum_res Aluminium r 21.7 47 0.0012 12.7 2.8 25 331-358 308-332 (405)
363 pfam02375 JmjN jmjN domain. 21.7 39 0.001 13.3 0.9 17 343-359 6-22 (34)
364 TIGR01020 rpsE_arch ribosomal 21.7 35 0.0009 13.6 0.7 27 179-205 117-148 (220)
365 cd01770 p47_UBX p47_UBX p47 i 21.7 30 0.00076 14.1 0.3 46 305-352 20-65 (79)
366 TIGR03558 oxido_grp_1 lucifera 21.7 47 0.0012 12.7 7.0 14 339-352 221-234 (323)
367 TIGR01359 UMP_CMP_kin_fam UMP- 21.7 47 0.0012 12.7 1.6 18 335-352 83-103 (189)
368 pfam10579 Rapsyn_N Rapsyn N-te 21.6 19 0.00047 15.7 -0.8 32 83-116 25-56 (80)
369 COG5211 SSU72 RNA polymerase I 21.6 41 0.001 13.1 1.0 24 33-56 12-35 (197)
370 KOG4655 consensus 21.6 39 0.001 13.2 0.9 36 187-225 99-136 (181)
371 TIGR00708 cobA cob(I)alamin ad 21.4 48 0.0012 12.6 2.3 30 182-211 63-93 (191)
372 pfam02449 Glyco_hydro_42 Beta- 21.4 48 0.0012 12.6 2.1 41 314-354 216-257 (376)
373 COG0426 FpaA Uncharacterized f 21.1 49 0.0012 12.6 5.5 13 58-70 69-81 (388)
374 cd00587 HCP_like The HCP famil 21.0 49 0.0012 12.6 3.4 45 63-116 96-140 (258)
375 pfam03652 UPF0081 Uncharacteri 20.9 49 0.0012 12.5 2.3 36 335-370 55-95 (134)
376 cd03033 ArsC_15kD Arsenate Red 20.8 49 0.0013 12.5 4.0 20 327-346 91-110 (113)
377 PRK13133 consensus 20.8 49 0.0013 12.5 3.2 35 314-353 198-232 (267)
378 PRK05579 bifunctional phosphop 20.8 49 0.0013 12.5 2.4 50 314-368 303-352 (392)
379 TIGR01975 isoAsp_dipep beta-as 20.5 50 0.0013 12.5 2.3 199 201-421 101-337 (391)
380 TIGR03555 F420_mer 5,10-methyl 20.5 50 0.0013 12.5 6.5 51 296-354 268-319 (325)
381 PRK13115 consensus 20.5 50 0.0013 12.5 3.3 35 314-353 197-231 (269)
382 TIGR02036 dsdC D-serine deamin 20.5 50 0.0013 12.5 1.7 38 194-237 111-150 (302)
383 COG0276 HemH Protoheme ferro-l 20.4 50 0.0013 12.5 3.0 22 27-48 8-29 (320)
384 PRK07565 dihydroorotate dehydr 20.4 50 0.0013 12.5 3.0 81 312-400 248-328 (333)
385 TIGR01979 sufS cysteine desulf 20.4 50 0.0013 12.5 4.1 22 377-398 292-313 (409)
386 PRK09620 hypothetical protein; 20.4 50 0.0013 12.5 2.4 33 316-353 133-165 (229)
387 COG0349 Rnd Ribonuclease D [Tr 20.3 50 0.0013 12.5 2.5 33 184-217 89-124 (361)
388 PRK12398 pyruvoyl-dependent ar 20.3 50 0.0013 12.5 3.3 15 327-341 78-92 (162)
389 KOG0995 consensus 20.2 50 0.0013 12.4 1.9 16 303-318 148-163 (581)
390 KOG2368 consensus 20.2 50 0.0013 12.4 4.1 60 175-256 149-209 (316)
391 PRK03592 haloalkane dehalogena 20.2 50 0.0013 12.4 1.8 31 205-235 74-105 (294)
392 PRK09257 aromatic amino acid a 20.2 51 0.0013 12.4 2.8 59 241-300 153-219 (397)
393 smart00545 JmjN Small domain f 20.2 42 0.0011 13.0 0.8 17 343-359 8-24 (42)
394 TIGR01582 FDH-beta formate deh 20.2 36 0.00091 13.6 0.5 45 184-235 144-217 (293)
395 cd02810 DHOD_DHPD_FMN Dihydroo 20.2 51 0.0013 12.4 3.2 19 66-84 71-89 (289)
396 COG0761 lytB 4-Hydroxy-3-methy 20.0 25 0.00063 14.8 -0.4 20 209-229 102-121 (294)
No 1
>TIGR00089 TIGR00089 RNA modification enzyme, MiaB family; InterPro: IPR005839 This entry represents a family defined on the basis of sequence similarity. Most of these proteins are not yet characterised, but those that are include CDK5 regulatory subunit-associated protein 1, which specifically inhibits CDK5 activation by CDK5R1 . MiaB, a tRNA modification enzyme . The size of proteins in this entry ranges from 47 to 61 kDa and they contain six conserved cysteines, three of which are clustered. .
Probab=100.00 E-value=0 Score=1014.34 Aligned_cols=432 Identities=47% Similarity=0.773 Sum_probs=398.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHH-CCCEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC-CEE
Q ss_conf 7999957985688789999999998-79868776010889999278325079999999999999876766421898-189
Q gi|255764472|r 26 RFFVKSYGCQMNVYDSLRMEDMFFS-QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGD-LLV 103 (469)
Q Consensus 26 kv~i~TlGC~~N~~Dse~i~~~L~~-~G~~~~~~~~~ADviiINTCsV~~~ae~k~~~~i~~~~~~~~~~~k~~p~-~~I 103 (469)
||||+||||+||++|||+|+++|.+ .||+.++++++|||+|||||+||++|++|++++|++++.++ ++||. ++|
T Consensus 1 k~~i~T~GC~~N~~Dse~m~~~L~~~~G~~~~~~~~~ADv~i~NTC~vr~~ae~k~~~~l~~~~~~k----~~~~~d~~i 76 (455)
T TIGR00089 1 KVYIETYGCQMNEADSEIMAGLLKEAAGYEVTDDPEEADVIIINTCAVREKAEQKVRSELGELAKLK----KKNPDDAKI 76 (455)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHCCEEECCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHHHHC----CCCCCCCEE
T ss_conf 9689970666557889999998887447143388664457998534565157899999999999827----778888589
Q ss_pred EEECCCCCCCHHHHHHHHCCCCCCCCCHHHCCHHHHHHHHCCCC--EECCC---CCCCC--CCCCCCCCCCCCCCCCCCC
Q ss_conf 99647301087889874100110011001113168887530597--00235---54411--2444333334575677772
Q gi|255764472|r 104 VVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGK--RVVDT---DYSVE--DKFERLSIVDGGYNRKRGV 176 (469)
Q Consensus 104 vVtGC~aq~~~e~l~~~~p~vd~vig~~~~~~i~~~i~~~~~g~--~~~~~---~~~~~--~~~~~~~~~~~~~~~~~~~ 176 (469)
+|||||||+++++|++..|.+|+++|++++.+++++|+....|. +..-. ..... +.+..++. +....+.+
T Consensus 77 ~V~GC~aq~~~~~l~~~~p~~d~~~G~~~~~~~~~~i~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~---~~~~~~~~ 153 (455)
T TIGR00089 77 VVAGCLAQREGEELLKRIPEVDIVLGTQDVERIPELINSAEEGLREKQVVESVENISKEREEVYEELPR---PRSFEGKT 153 (455)
T ss_pred EEECCCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHCCC---CCCCCCCE
T ss_conf 984644323878999645856999843137889999999863853335562278720345455644366---44677753
Q ss_pred EEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCC-CCHHHHHHH
Q ss_conf 5787412332446811100122137641005889998876310133105873145411341134443100-021678862
Q gi|255764472|r 177 TAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLLYSLS 255 (469)
Q Consensus 177 ~a~ikI~~GC~~~CsfC~ip~~RG~~rSr~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y~g~~~~~~~~~-l~~Ll~~l~ 255 (469)
+|||+||+|||++||||+||++||+.||||+|+|++|++.|+++|+|||+||||||++|+|.|+.+. .+ |++||++|.
T Consensus 154 ~a~~~I~~GC~~~CtyCivP~~RG~~rSr~~e~Il~E~~~Lv~~G~kEi~L~Gqnv~~YgG~D~~~~-~~~La~LL~~l~ 232 (455)
T TIGR00089 154 RAFVKIQEGCDKFCTYCIVPYTRGRERSRPPEDILEEVKELVSKGVKEITLLGQNVNAYGGKDLEGK-TNSLADLLRELS 232 (455)
T ss_pred EEEEEECCCCCCCCCEEEECCCCCEECCCCHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCC-CCCHHHHHHHHH
T ss_conf 8999840265869776881342660013588999999999984698099999885256247788889-764799999984
Q ss_pred C-CCCCCCCCCCCCCCCCCCCHHHHHHCCC--CCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCC
Q ss_conf 0-4443001354421000100036652022--111220133211145789987303334411467899987401344320
Q gi|255764472|r 256 E-IKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332 (469)
Q Consensus 256 ~-i~~~~riR~~s~~P~~~~~~li~~~~~~--~~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~~~r~~~p~~~i~ 332 (469)
+ ++|++|||++|+||.+++|+||++|++. +++|||||||||||||+|||+|||+||.++|+++|++||+++|+++|+
T Consensus 233 ~ki~G~~RIR~~~~hP~~~~d~li~~~~~~~~~~v~~~lHlPvQSGSd~iLK~M~R~Y~~e~~~~~~~k~r~~~P~~~i~ 312 (455)
T TIGR00089 233 KKIDGIERIRFTSSHPDDVTDDLIELIAENKDPKVCKHLHLPVQSGSDRILKRMNRKYTREEYLEIVEKLRAKVPDAAIT 312 (455)
T ss_pred HHCCCCEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEECCCEECCCHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 00597026886046703268789999985078853520221266188699970378988899999999999847881775
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEECCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HCC
Q ss_conf 0000135220124789886332210111002000011120123214368898999999999999999999999998-579
Q gi|255764472|r 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDA-CVG 411 (469)
Q Consensus 333 tdiIvGfPgETeedf~~Tl~~i~~~~~~~~~vf~yS~r~gT~Aa~m~~qV~~~vk~~R~~~l~~~~~~~~~~~~~~-~iG 411 (469)
|||||||||||||||++|++|+++++|+++|+|+||||||||||.|+||||.++|++|+++|++++.+++.++|++ ++|
T Consensus 313 TDiIVGFPGETeEdF~~Tl~l~~ev~F~~~~~F~YSpR~gTpAa~~~d~vP~~vk~~R~~~L~~l~~~i~~~~n~~~~~G 392 (455)
T TIGR00089 313 TDIIVGFPGETEEDFEETLDLVEEVKFDKLHSFIYSPRPGTPAADMKDQVPEEVKKERLERLIALQKEISLEKNKRKYVG 392 (455)
T ss_pred CCEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 02688289998899999999985238443431205788887463567888988999999999999999999999875049
Q ss_pred CEEEEEEEC---CCCCCC----EEEEECCCCCEEEECCC--CCCCCCEEEEEEEEEECCEEEE
Q ss_conf 789999842---568086----89999878628897388--7676888999999830873899
Q gi|255764472|r 412 QIIEVLIEK---HGKEKG----KLVGRSPWLQSVVLNSK--NHNIGDIIKVRITDVKISTLYG 465 (469)
Q Consensus 412 ~~~~Vlve~---~~~~~~----~~~G~t~~~~~V~~~~~--~~~~G~~v~V~I~~~~~~~L~G 465 (469)
++++||||+ ...+.+ .+.|||++|.+|.|+++ ...+|++++|+|++++.++|+|
T Consensus 393 ~~~~VLve~~~~~~~~~~~~gR~~~G~t~~~~~v~~~~~~~~~~~G~~v~V~i~~~~~~~L~G 455 (455)
T TIGR00089 393 KTLEVLVEGAYEEGKKEGLVGRELSGRTENYKLVVFEGGEDKNLIGKFVKVKITEAAEYSLIG 455 (455)
T ss_pred CEEEEEEECCCCCCCCCCCEEEEEEEECCCCCEEEEECCCCCCCCCCEEEEEEEEECCCCCCC
T ss_conf 878999853712454576148999986389858998167785547767999999734766779
No 2
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=0 Score=951.35 Aligned_cols=432 Identities=47% Similarity=0.820 Sum_probs=396.2
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHCCC-EECCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 7607999957985688789999999998798-687760108899992783250799999999999998767664218981
Q gi|255764472|r 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGY-ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDL 101 (469)
Q Consensus 23 ~~kkv~i~TlGC~~N~~Dse~i~~~L~~~G~-~~~~~~~~ADviiINTCsV~~~ae~k~~~~i~~~~~~~~~~~k~~p~~ 101 (469)
+.+||||+||||++|++|||+|++.|.+.|| +.++++++||++|||||+||++|++|++++|++++. .+|++
T Consensus 1 ~~~kv~i~T~GC~~N~~DSe~m~~~L~~~G~~~~~~~~~eADvviiNTC~V~~~a~~k~~~~i~~~~~-------~~p~~ 73 (437)
T COG0621 1 MMKKVYIETLGCQMNLYDSERMAGLLEAAGYEELVEDPEEADVVIINTCAVREKAEQKVRSAIGELKK-------LKPDA 73 (437)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCEEEEHHHHHHHHHHHHHHH-------HCCCC
T ss_conf 98459999668884277899999999876885346985568889996676553599999999999997-------29997
Q ss_pred EEEEECCCCCCCHHHHHHHHCCCCCCCCCHHHCCHHHHHHHHCCCCEEC--CCCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 8999647301087889874100110011001113168887530597002--35544112444333334575677772578
Q gi|255764472|r 102 LVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVV--DTDYSVEDKFERLSIVDGGYNRKRGVTAF 179 (469)
Q Consensus 102 ~IvVtGC~aq~~~e~l~~~~p~vd~vig~~~~~~i~~~i~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 179 (469)
+|+||||+||++ +++++..|+||+|+|++++.+++++|+....+.... ...+.....++.++. .+.++++||
T Consensus 74 ~iiVtGC~aq~~-~~i~~~~p~vd~v~G~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~A~ 147 (437)
T COG0621 74 KIIVTGCLAQAE-EEILERAPEVDIVLGPQNKERLPEAIEKALRGKKEFVVVLSFPEEEKFDKLPP-----RREGGVRAF 147 (437)
T ss_pred EEEEECCCCCCC-HHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC-----CCCCCEEEE
T ss_conf 899968712357-88895088860997873477789999998613565422023454233334777-----767874799
Q ss_pred EEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCCCHHHHHHHCCCC
Q ss_conf 74123324468111001221376410058899988763101331058731454113411344431000216788620444
Q gi|255764472|r 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259 (469)
Q Consensus 180 ikI~~GC~~~CsfC~ip~~RG~~rSr~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y~g~~~~~~~~~l~~Ll~~l~~i~~ 259 (469)
|+||+|||++||||+||++||++||||+++|++|++.|+++|+|||+|||||+++| |.|+.+...+|++||+.|.+++|
T Consensus 148 v~I~eGCn~~CtfCiiP~~RG~~rSr~~e~Il~ev~~Lv~~G~kEI~L~gqdv~aY-G~D~~~~~~~l~~Ll~~l~~I~G 226 (437)
T COG0621 148 VKIQEGCNKFCTFCIIPYARGKERSRPPEDILKEVKRLVAQGVKEIVLTGQDVNAY-GKDLGGGKPNLADLLRELSKIPG 226 (437)
T ss_pred EEHHCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEEEHHHC-CCCCCCCCCCHHHHHHHHHCCCC
T ss_conf 88120867888806405367875577989999999999988974999998811010-44677776689999999960799
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCC
Q ss_conf 30013544210001000366520221112201332111457899873033344114678999874013443200000135
Q gi|255764472|r 260 LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGF 339 (469)
Q Consensus 260 ~~riR~~s~~P~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~~~r~~~p~~~i~tdiIvGf 339 (469)
++|||++|+||..++|+||+++++.+++|||||||+|||||+|||+|||+||.++|+++++++|+++|+++|+|||||||
T Consensus 227 ~~riR~~~~~P~~~~d~lIe~~~~~~kv~~~lHlPvQsGsd~ILk~M~R~yt~e~~~~~i~k~R~~~Pd~~i~tDiIVGF 306 (437)
T COG0621 227 IERIRFGSSHPLEFTDDLIEAIAETPKVCPHLHLPVQSGSDRILKRMKRGYTVEEYLEIIEKLRAARPDIAISTDIIVGF 306 (437)
T ss_pred CEEEEEECCCCHHCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEECCEEEEC
T ss_conf 10899935880011889999986578414344675556987999973787679999999999998689856752679979
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCHHEEECCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 22012478988633221011100200001112012321436889899999999999999999999999857978999984
Q gi|255764472|r 340 PGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIE 419 (469)
Q Consensus 340 PgETeedf~~Tl~~i~~~~~~~~~vf~yS~r~gT~Aa~m~~qV~~~vk~~R~~~l~~~~~~~~~~~~~~~iG~~~~Vlve 419 (469)
||||||||++|++|+++++|+++|+|+||||||||||.|++|||.++|++|+++|++++.++..+++++++|++++||||
T Consensus 307 PgETEedFe~tl~lv~e~~fd~~~~F~YSpRpGTpAa~~~~qvp~~vkkeR~~~L~~l~~~~~~~~~~~~vG~~~~VLVe 386 (437)
T COG0621 307 PGETEEDFEETLDLVEEVRFDRLHVFKYSPRPGTPAALMPDQVPEEVKKERLRRLQELQQQISAEFNQKLVGKTLEVLVE 386 (437)
T ss_pred CCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE
T ss_conf 99999999999999997488878533048999982113777899899999999999999999999999736988999997
Q ss_pred CCCCCCCEEEEECCCCCEEEECCCCC-CCCCEEEEEEEEEECCEEEEEEE
Q ss_conf 25680868999987862889738876-76888999999830873899994
Q gi|255764472|r 420 KHGKEKGKLVGRSPWLQSVVLNSKNH-NIGDIIKVRITDVKISTLYGELV 468 (469)
Q Consensus 420 ~~~~~~~~~~G~t~~~~~V~~~~~~~-~~G~~v~V~I~~~~~~~L~G~vi 468 (469)
+...+.+.+.|||++|.+|++.+... .+|++++|+|+++..++|+|+++
T Consensus 387 ~~~~~~~~~~Grt~~~~~v~~~~~~~~~~G~~v~VkIt~~~~~~L~g~~v 436 (437)
T COG0621 387 EGGSKKGELIGRTENYRPVVFGGVYTEDIGEFVEVKITEADEYSLIGEVV 436 (437)
T ss_pred ECCCCCCCEEEECCCCCEEEECCCCCCCCCCEEEEEEEECCCCCEEEEEC
T ss_conf 43676780589758997788567666788878999998646873378866
No 3
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme; InterPro: IPR006467 This clade of sequences is closely related to MiaB, a modifier of isopentenylated adenosine-37 of certain eukaryotic and bacterial tRNAs (see IPR006463 from INTERPRO). Sequence alignments suggest that these sequences perform the same chemical transformation as MiaB, perhaps on a different (or differently modified) tRNA base substrate. This clade represents a subfamily that spans low GC Gram-positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium , , ..
Probab=100.00 E-value=0 Score=905.92 Aligned_cols=417 Identities=32% Similarity=0.609 Sum_probs=373.9
Q ss_pred EEECCCCCCHHHHHHHHHHHHHCCCEECCCCCC--CCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 995798568878999999999879868776010--889999278325079999999999999876766421898189996
Q gi|255764472|r 29 VKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDD--ADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVA 106 (469)
Q Consensus 29 i~TlGC~~N~~Dse~i~~~L~~~G~~~~~~~~~--ADviiINTCsV~~~ae~k~~~~i~~~~~~~~~~~k~~p~~~IvVt 106 (469)
|+||||++||||||.|++.|...||+.+.+.+. ||+|||||||||+.||++++++|++++ |+||+++||||
T Consensus 1 i~TlGCrvN~yEse~~k~~l~~~GY~~~~~~~~~pA~~~iiNTCtVT~~Ad~~~R~~ir~~~-------r~NP~A~iivT 73 (492)
T TIGR01579 1 IETLGCRVNQYESESLKNQLIQKGYEVVPDEDKAPADVYIINTCTVTAKADRKARRAIRRAK-------RENPKAKIIVT 73 (492)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCEEECCCCCCCEEEEEEECCEECHHHHHHHHHHHHHHH-------HCCCCEEEEEE
T ss_conf 93267643635799999999757926842788543059998031433067888999999998-------20995599996
Q ss_pred CCCCCCCHHHHHHHHCCCCCCCCCHHHCCHHHHHHHHCCC-----C-------------------EECC----CCC----
Q ss_conf 4730108788987410011001100111316888753059-----7-------------------0023----554----
Q gi|255764472|r 107 GCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFG-----K-------------------RVVD----TDY---- 154 (469)
Q Consensus 107 GC~aq~~~e~l~~~~p~vd~vig~~~~~~i~~~i~~~~~g-----~-------------------~~~~----~~~---- 154 (469)
||+||..|+++++ ++++++++|+.+++.|.+++.....- . +++. ..+
T Consensus 74 GC~AQ~~~~~l~~-l~~~~~v~gn~~K~~~~~~~~~~~~~~vqrGPaPidqyvCGmrallaslkkkiisleltsefPsqt 152 (492)
T TIGR01579 74 GCYAQLNPKELAE-LKEVDLVLGNKEKDKILKLLGAYLEKLVQRGPAPIDQYVCGMRALLASLKKKIISLELTSEFPSQT 152 (492)
T ss_pred CCCCCCCHHHHHC-CCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCC
T ss_conf 2311268799951-587289844611137889999999987413888245677779999987511125554113687644
Q ss_pred -------------------------CCCCCCCCCCCCC-------CC----CCCCCCCEEEEEECCCCCCCCCCCCHHHH
Q ss_conf -------------------------4112444333334-------57----56777725787412332446811100122
Q gi|255764472|r 155 -------------------------SVEDKFERLSIVD-------GG----YNRKRGVTAFLTIQEGCDKFCTFCVVPYT 198 (469)
Q Consensus 155 -------------------------~~~~~~~~~~~~~-------~~----~~~~~~~~a~ikI~~GC~~~CsfC~ip~~ 198 (469)
............. +| .-...+++||||||+|||+.||||+||++
T Consensus 153 hmP~l~a~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PrWeeGPlv~~DAf~~~~RAFvKVQdGCn~~CsyC~IP~~ 232 (492)
T TIGR01579 153 HMPILEAKPLLTLAESFVRVKNKIFVREKEVPEFEEVAPRPRWEEGPLVAVDAFEERTRAFVKVQDGCNKFCSYCIIPFA 232 (492)
T ss_pred CCCHHHCCCCCCCCCHHHHCCCCCCCCCCCCCCHHHHCCCCCCCCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCC
T ss_conf 55023136312476501101154200256431055436888655674312310027886257887588988441014033
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCCCHHHHHHHC-CCCCCCCCCCCCCCCCCCCH
Q ss_conf 13-76410058899988763101331058731454113411344431000216788620-44430013544210001000
Q gi|255764472|r 199 RG-IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE-IKGLVRLRYTTSHPRDMSDC 276 (469)
Q Consensus 199 RG-~~rSr~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y~g~~~~~~~~~l~~Ll~~l~~-i~~~~riR~~s~~P~~~~~~ 276 (469)
|| +.||+|.+.|++||+.|+..||+||||||+|+++| |+|+..++.+|++||+.|.+ ++|+.||||||+||.+++++
T Consensus 233 RGt~~RS~~~e~~~~~v~~Lv~~gy~EvVLTGvnlg~Y-g~d~~~~g~~L~~Ll~~i~~q~~g~~RiRlSS~~p~~~~~~ 311 (492)
T TIGR01579 233 RGTRSRSVPLEKILEQVKELVAKGYKEVVLTGVNLGSY-GDDLGENGSSLAKLLEQILKQIPGIERIRLSSIDPEDIDEE 311 (492)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCC-CCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCHHHHCHH
T ss_conf 78976416678999999999737755999840014445-68887667608999999986468834676325776550489
Q ss_pred HHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 36652022111220133211145789987303334411467899987401344320000013522012478988633221
Q gi|255764472|r 277 LIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356 (469)
Q Consensus 277 li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~~~r~~~p~~~i~tdiIvGfPgETeedf~~Tl~~i~~ 356 (469)
|+++|++.+++||||||+||||||+|||+|+|+|+.+++++++.+||+..|+..|+||+||||||||||||++|++++++
T Consensus 312 l~~l~~s~~~l~PHlHlsLQSGsd~vLkrM~R~Y~r~~~~~~v~~lr~~~p~~~~gtD~IVGFP~E~eedFq~t~~~~~~ 391 (492)
T TIGR01579 312 LLELIKSEKKLCPHLHLSLQSGSDRVLKRMRRKYTRDDFLKLVQKLRSVRPDYAFGTDVIVGFPGESEEDFQETLRIVKE 391 (492)
T ss_pred HHHHHHCCCCCCCCCCEEEECCCHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHH
T ss_conf 99997347641632000022277379842487887689999999998507763037603740888988999999999852
Q ss_pred HHHHHCCCHHEEECCCHHHHHCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCEEEEECCC
Q ss_conf 011100200001112012321436--889899999999999999999999999857978999984256808689999878
Q gi|255764472|r 357 IGYAQAFSFKYSPRLGTPGSNMLE--QVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPW 434 (469)
Q Consensus 357 ~~~~~~~vf~yS~r~gT~Aa~m~~--qV~~~vk~~R~~~l~~~~~~~~~~~~~~~iG~~~~Vlve~~~~~~~~~~G~t~~ 434 (469)
++|.++|||||||||||+|++|++ +||..++|+|++.|.++.++.+.++.++++|++.+||||+. ...+.|.|++++
T Consensus 392 ~~~~~~HiFpyS~R~~T~A~~m~~rf~v~~~~~KeR~~~L~~~~~~~~~~~~~k~~G~~~~vLVE~~-~~~~v~~g~~~~ 470 (492)
T TIGR01579 392 IEFSGLHIFPYSARPGTPASAMDDRFKVPETIKKERVKRLKELAEKVYQEYLKKYLGKELEVLVEKE-KAQGVLTGYSEN 470 (492)
T ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEE-ECCEEEEECCCC
T ss_conf 6602133542688432812047874427611588999999999888889999986188348998998-075578730886
Q ss_pred CCEEEECCCC-CCCCCEEEEEE
Q ss_conf 6288973887-67688899999
Q gi|255764472|r 435 LQSVVLNSKN-HNIGDIIKVRI 455 (469)
Q Consensus 435 ~~~V~~~~~~-~~~G~~v~V~I 455 (469)
|..|.|.+.+ ..+|.++.|+|
T Consensus 471 y~~~~~~~~~~~~~~~~~~V~i 492 (492)
T TIGR01579 471 YLKVKVESDKKDAAGELISVRI 492 (492)
T ss_pred EEEEEEECCCCCEECCCEEEEC
T ss_conf 1278884478500025136617
No 4
>TIGR01574 miaB-methiolase tRNA-i(6)A37 thiotransferase enzyme MiaB; InterPro: IPR006463 These sequences are homologs of the MiaB enzyme responsible for the modification of the isopentenylated adenine-37 base of most bacterial and eukaryotic tRNAs that read codons beginning with uracil (all except tRNA(I,V) Ser). Adenine-37 is next to the anticodon on the 3 side in these tRNAs, and lack of modification at this site leads to an increased spontaneous mutation frequency. Isopentenylated A-37 is modified by methylthiolation at position 2, either by MiaB alone or in concert with a separate methylase yet to be discovered (MiaC?) , , ..
Probab=100.00 E-value=0 Score=909.35 Aligned_cols=436 Identities=44% Similarity=0.771 Sum_probs=404.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHC-CCEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 79999579856887899999999987-98687760108899992783250799999999999998767664218981899
Q gi|255764472|r 26 RFFVKSYGCQMNVYDSLRMEDMFFSQ-GYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVV 104 (469)
Q Consensus 26 kv~i~TlGC~~N~~Dse~i~~~L~~~-G~~~~~~~~~ADviiINTCsV~~~ae~k~~~~i~~~~~~~~~~~k~~p~~~Iv 104 (469)
|+||+||||+||.+||+.|++.|.+. ||+.|++.++|||++||||||+.+|+.|+|..|+.++.+|+ ++|+++|.
T Consensus 1 klfi~TyGCqMN~~dS~~m~~~L~a~~gY~~t~~~~~AdvlLlNTCSvRe~A~~kvF~~lG~f~~lKk----~~pd~iiG 76 (456)
T TIGR01574 1 KLFIKTYGCQMNVRDSEKMADLLLAKEGYELTEDAEEADVLLLNTCSVREKAEEKVFGELGRFKKLKK----KNPDLIIG 76 (456)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCEEEEECCCEEECCCCHHHHHCCCCHHHHH----CCCCEEEE
T ss_conf 95056316334744589999998643064335346244543441210001412000222165024341----28976885
Q ss_pred EECCCCCC--CHHHHHHHHCCCCCCCCCHHHCCHH---HHHHHHCCCC-EECCCCCC---CCCCCCCCCCCCCCCCCC-C
Q ss_conf 96473010--8788987410011001100111316---8887530597-00235544---112444333334575677-7
Q gi|255764472|r 105 VAGCVAQA--EGEEILRRSPIVNVVVGPQTYYRLP---ELLERARFGK-RVVDTDYS---VEDKFERLSIVDGGYNRK-R 174 (469)
Q Consensus 105 VtGC~aq~--~~e~l~~~~p~vd~vig~~~~~~i~---~~i~~~~~g~-~~~~~~~~---~~~~~~~~~~~~~~~~~~-~ 174 (469)
|+||+||. .+++|.+.+|.||.|+|+++.++|+ ++|+.....+ -.++..+. -.+..+. . -.+..|. .
T Consensus 77 v~GC~A~~es~~~~I~~~~PyvD~v~G~~~~~rl~sif~~i~~~~~~k~~~vd~~~~ryrE~~~~~~-r--fla~~r~Eg 153 (456)
T TIGR01574 77 VCGCMASRESLGNKILKRAPYVDIVFGTRNIHRLPSIFELIEEKLLDKEMVVDISSERYRESEVIDR-R--FLAEVRNEG 153 (456)
T ss_pred CCCCCCCCHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCC-C--CCCCCCCCC
T ss_conf 1244243113221242038825685574033466899999754311654316772374214500065-1--177512476
Q ss_pred CCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCC--CCCCCCCCHHHH
Q ss_conf 725787412332446811100122137641005889998876310133105873145411341134--443100021678
Q gi|255764472|r 175 GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL--DGEKCTFSDLLY 252 (469)
Q Consensus 175 ~~~a~ikI~~GC~~~CsfC~ip~~RG~~rSr~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y~g~~~--~~~~~~l~~Ll~ 252 (469)
.+.+||+|+.|||.+||||+||++||+.+|||+++|+.||+.|++.|+|||.|+|||+++|+|+++ ++....|++||+
T Consensus 154 ~~~sfv~Im~GCdkfCtYCiVPYtRG~E~Sr~~~~Il~Ev~~l~~~G~kEi~LLGQNVN~YRG~~frne~~~~~f~dLL~ 233 (456)
T TIGR01574 154 KFKSFVNIMEGCDKFCTYCIVPYTRGEEISRPLDDILQEVQKLAEKGVKEITLLGQNVNAYRGKDFRNEGKTVDFADLLR 233 (456)
T ss_pred CCEEEEECCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCEECHHHHHH
T ss_conf 42252403147688545466153048201257446999999998658648740365301115875225886736699999
Q ss_pred HHH----CCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 862----0444300135442100010003665202211122013321114578998730333441146789998740134
Q gi|255764472|r 253 SLS----EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 (469)
Q Consensus 253 ~l~----~i~~~~riR~~s~~P~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~~~r~~~p~ 328 (469)
.|. .++++.||||.|+||.+++|+||+.+++.+++|.++|||+||||++|||+|+|.||.++|++++.+||+++|+
T Consensus 234 ~l~rrCe~~~~i~RIRFtsSHP~~~~D~liev~a~~~~l~~~~HLPvQsGS~~vLk~M~R~Yt~e~Y~~~v~KLk~~~Pn 313 (456)
T TIGR01574 234 ELARRCEVKDGIERIRFTSSHPKDFDDDLIEVLAKEPKLCKLLHLPVQSGSSEVLKLMKRKYTRERYLELVRKLKEAVPN 313 (456)
T ss_pred HHHHHCCHHHCCCCEEECCCCCCCCCHHHHHHHHCCCCEEEEECCCCEECHHHHHHHCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 99875102215851131378787654468788737894666643752007079985107755689999999999873787
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEECCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 43200000135220124789886332210111002000011120123214368898999999999999999999999998
Q gi|255764472|r 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDA 408 (469)
Q Consensus 329 ~~i~tdiIvGfPgETeedf~~Tl~~i~~~~~~~~~vf~yS~r~gT~Aa~m~~qV~~~vk~~R~~~l~~~~~~~~~~~~~~ 408 (469)
+.|+|||||||||||+||||+||++++++.||..+.|.||||||||||+|+|+||+++|++|+.+|++++.+....+-++
T Consensus 314 v~lStDiivGFPGEt~edFE~Tl~l~~~V~Fd~~f~F~Ys~ReGTpAa~m~d~vp~~~~~~RL~~l~~~~~~~~~k~~k~ 393 (456)
T TIGR01574 314 VSLSTDIIVGFPGETEEDFEETLDLLREVEFDSAFSFIYSPREGTPAADMPDDVPEEVKKERLQRLQALVNEIALKKMKK 393 (456)
T ss_pred CEECCCEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 12124536736877846689999998522624123344138676855678788648999999999999988999999998
Q ss_pred HCCCEEEEEEECCCCCC-CEEEEECCCCCEEEECCCCC--CCCCEEEEEEEEEECCEEEEEEE
Q ss_conf 57978999984256808-68999987862889738876--76888999999830873899994
Q gi|255764472|r 409 CVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSKNH--NIGDIIKVRITDVKISTLYGELV 468 (469)
Q Consensus 409 ~iG~~~~Vlve~~~~~~-~~~~G~t~~~~~V~~~~~~~--~~G~~v~V~I~~~~~~~L~G~vi 468 (469)
++|++++||||+.++++ ..+.|||++...|.|+|... .+|+||.|+|++|..+.|.|++|
T Consensus 394 ~~gkt~~vLvE~~s~~np~~L~G~Te~~~lv~~eG~~dPt~iG~fv~V~i~~~~~~~L~G~~V 456 (456)
T TIGR01574 394 REGKTLKVLVEGESRNNPEELAGRTENNKLVNFEGKEDPTLIGKFVDVKITEVKRRSLRGELV 456 (456)
T ss_pred HCCCEEEEEEECCCCCCHHHHCCCCCCCCEEEECCCCCCCCCCEEEEEEEEEECCCEEEEEEC
T ss_conf 609889999822566883676452227706882168686301128899998702530202419
No 5
>TIGR01125 TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125; InterPro: IPR005840 This is a family of mainly hypothetical proteins of unknown function. .
Probab=100.00 E-value=0 Score=860.69 Aligned_cols=434 Identities=32% Similarity=0.529 Sum_probs=393.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHCCCEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 79999579856887899999999987986877601088999927832507999999999999987676642189818999
Q gi|255764472|r 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVV 105 (469)
Q Consensus 26 kv~i~TlGC~~N~~Dse~i~~~L~~~G~~~~~~~~~ADviiINTCsV~~~ae~k~~~~i~~~~~~~~~~~k~~p~~~IvV 105 (469)
||.|.+|||++|.+|||+|.+.|.++||+++.+.++||++|+|||+|+++|.++|..+|..+-..|+ ..+.||||
T Consensus 1 kig~~sLGC~KNlvDSE~~Lg~L~~~Gye~~~~~e~AD~vIvNTC~FI~~A~~ES~~~i~e~~d~K~-----~y~~KviV 75 (475)
T TIGR01125 1 KIGFVSLGCPKNLVDSEVLLGKLREAGYEVTPNYEDADVVIVNTCGFIEDAKQESIDTIGELLDAKD-----EYGKKVIV 75 (475)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCCEEEECCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHH-----HCCCEEEE
T ss_conf 9378834887235669999988854584430684547778980442304789999999999987586-----52975999
Q ss_pred ECCCCCCCHHHHHHHHCCCCCCCCCHHHCCHHHHHHHHCCCCEECC----CCC--------------CCCCCCCCCCCCC
Q ss_conf 6473010878898741001100110011131688875305970023----554--------------4112444333334
Q gi|255764472|r 106 AGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVD----TDY--------------SVEDKFERLSIVD 167 (469)
Q Consensus 106 tGC~aq~~~e~l~~~~p~vd~vig~~~~~~i~~~i~~~~~g~~~~~----~~~--------------~~~~~~~~~~~~~ 167 (469)
+|||+++|.|+|.+.+|+|+.++|++++..|.+.|++...+.++.. ..+ +..+...+-...-
T Consensus 76 ~GCL~~~y~e~L~~~~P~v~~~~G~~d~~~i~~~i~~~~~~qrv~~~~~~~~~~~~~~pg~ragve~p~ren~rhgdvf~ 155 (475)
T TIGR01125 76 TGCLVERYKEELKEEIPEVKAITGTEDVEEILNAIESLEPGQRVKDKLPFKSEIPEEEPGMRAGVETPQRENTRHGDVFV 155 (475)
T ss_pred ECCCCCCCHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
T ss_conf 65566543466542075236752588889999999742265203553677564112477520124564311345564574
Q ss_pred CCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCC-----
Q ss_conf 575677772578741233244681110012213764100588999887631013310587314541134113444-----
Q gi|255764472|r 168 GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG----- 242 (469)
Q Consensus 168 ~~~~~~~~~~a~ikI~~GC~~~CsfC~ip~~RG~~rSr~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y~g~~~~~----- 242 (469)
+....+++++|||||++||+++||||+||.+||+.||||+++|++|++.|+++|+|||+|++|||++| |.|+..
T Consensus 156 pR~~~Tpr~YAYlKvaEGC~~~CaFCiIP~~rG~~rSR~ie~i~~Ea~~L~~~GvKEiiliaQDTt~Y-G~DL~~R~~~~ 234 (475)
T TIGR01125 156 PRIKLTPRHYAYLKVAEGCNRRCAFCIIPSLRGKLRSRPIEEILKEAKRLVDQGVKEIILIAQDTTAY-GVDLYTRESEF 234 (475)
T ss_pred CCCCCCCCCEEEEEECCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCC-CCEEEECCCCC
T ss_conf 02036877403687005778986521362336776776888899999999843983899996403477-64111105522
Q ss_pred -CC---CCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHH
Q ss_conf -31---00021678862044430013544210001000366520221112201332111457899873033344114678
Q gi|255764472|r 243 -EK---CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 (469)
Q Consensus 243 -~~---~~l~~Ll~~l~~i~~~~riR~~s~~P~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~ 318 (469)
.. ..|.+||++|.+++|.+|||+.|+||..++|++|++|++.+|+.|||++||||+||+|||.|+|+++.+..+.+
T Consensus 235 ~~e~v~~~L~~Ll~~L~k~~G~~WiR~~YlYP~~~~~~vI~~m~~~~KvLPYlDiPLQH~sd~ILK~M~R~~~~~~~~~~ 314 (475)
T TIGR01125 235 DGEQVKSKLVELLEELGKLGGIYWIRLLYLYPDELTDDVIDLMAEGPKVLPYLDIPLQHASDRILKLMRRPGSGEEQLDL 314 (475)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHCCCCCCCEECCCCCCCCHHHHHCCCCCCCHHHHHHH
T ss_conf 40145789999999740058962278887608888667889986389805122543123873787427899638899999
Q ss_pred HHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEECCCHHHHHCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 99987401344320000013522012478988633221011100200001112012321436889899999999999999
Q gi|255764472|r 319 IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKL 398 (469)
Q Consensus 319 i~~~r~~~p~~~i~tdiIvGfPgETeedf~~Tl~~i~~~~~~~~~vf~yS~r~gT~Aa~m~~qV~~~vk~~R~~~l~~~~ 398 (469)
+++||+++|+++|+|+|||||||||||||+++++|+++.+||++++|.|||.+||+|+.++++||+++|.+|..+|++++
T Consensus 315 i~~~R~~~P~~vlRttfIVGFPGETEEdF~eL~~Fv~e~~~D~lG~F~YS~eEgt~A~~Lpd~vPeEVk~~R~~~Lm~lQ 394 (475)
T TIGR01125 315 IERLREKVPDAVLRTTFIVGFPGETEEDFQELLDFVEEGQFDRLGVFTYSPEEGTDAFALPDQVPEEVKEERRERLMALQ 394 (475)
T ss_pred HHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 99999755661772246886889987889999999852021500002078323660350778878888999999999998
Q ss_pred HHHHHHHHHHHCCCEEEEEEECCCCCCC-----EEEEE----CCCCCEEEECCC-----CCCCCCEEEEEEEEEECCEEE
Q ss_conf 9999999998579789999842568086-----89999----878628897388-----767688899999983087389
Q gi|255764472|r 399 REQQVSFNDACVGQIIEVLIEKHGKEKG-----KLVGR----SPWLQSVVLNSK-----NHNIGDIIKVRITDVKISTLY 464 (469)
Q Consensus 399 ~~~~~~~~~~~iG~~~~Vlve~~~~~~~-----~~~G~----t~~~~~V~~~~~-----~~~~G~~v~V~I~~~~~~~L~ 464 (469)
++++.+.|++++|++++||||+..++.+ ..+|| +|+.+++++..+ ....|+++.|+|+++++|||+
T Consensus 395 ~~Is~~kn~~~vG~~~~vlId~~~~~~~d~pg~~~~GR~~~~APEvDG~Vyv~~~~~~~~~k~Gdi~~v~i~~~d~YDL~ 474 (475)
T TIGR01125 395 QRISAKKNQEFVGKKIEVLIDEYEEETNDQPGLELIGRSYGQAPEVDGVVYVNGAKLETLVKIGDILRVKITETDEYDLW 474 (475)
T ss_pred HHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEEEEECCCCCCC
T ss_conf 88889998884373777887055787777676146530114488868758883256332236788789998521665578
Q ss_pred E
Q ss_conf 9
Q gi|255764472|r 465 G 465 (469)
Q Consensus 465 G 465 (469)
|
T Consensus 475 G 475 (475)
T TIGR01125 475 G 475 (475)
T ss_pred C
T ss_conf 9
No 6
>TIGR01578 MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-type; InterPro: IPR006466 This clade of sequences is closely related to MiaB, a modifier of isopentenylated adenosine-37 of certain eukaryotic and bacterial tRNAs (see IPR006463 from INTERPRO). Sequence alignments suggest that this family of sequences perform the same chemical transformation as MiaB, perhaps on a different (or differently modified) tRNA base substrate. This clade represents a subfamily that spans the archaea and eukaryotes. The only archaeal miaB-like genes are in this group of sequences , , ..
Probab=100.00 E-value=0 Score=773.71 Aligned_cols=428 Identities=33% Similarity=0.533 Sum_probs=376.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHCCCEECC-CCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 79999579856887899999999987986877-60108899992783250799999999999998767664218981899
Q gi|255764472|r 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVN-SMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVV 104 (469)
Q Consensus 26 kv~i~TlGC~~N~~Dse~i~~~L~~~G~~~~~-~~~~ADviiINTCsV~~~ae~k~~~~i~~~~~~~~~~~k~~p~~~Iv 104 (469)
|||++||||.+|++||+.|.+.|.+.||+.++ +++||||.|||||||+.++|++++..|+.+ .+. +..+|
T Consensus 1 kvy~E~yGC~~N~~~~~~~~~~L~~~G~~lv~~~~~EAD~~I~NtCtV~~~TE~~m~~rI~~l---~~~------Gk~vv 71 (487)
T TIGR01578 1 KVYVETYGCTLNRADSEIIKNSLKKAGHELVNANAEEADVAILNTCTVKKKTEDKMLYRIKEL---KRK------GKEVV 71 (487)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHCCCEEECCCCCCCEEEEECCCEEEHHHHHHHHHHHHHH---HHC------CCEEE
T ss_conf 967877313366134899999998717623038700051777514224014588999999866---328------95699
Q ss_pred EECCCCCCCHHHHHHHHCCCCCCCCCHHHCCHHHHHHHHCCCCEECCC--CCCCCCCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 964730108788987410011001100111316888753059700235--544112444333334575677772578741
Q gi|255764472|r 105 VAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDT--DYSVEDKFERLSIVDGGYNRKRGVTAFLTI 182 (469)
Q Consensus 105 VtGC~aq~~~e~l~~~~p~vd~vig~~~~~~i~~~i~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~a~ikI 182 (469)
|+||||+..++++....+.+. +.+-++..+|.++|+....+...-.+ ............+.+.+..+.++....|+|
T Consensus 72 V~GC~P~~~~~~~~~~~~~~~-~~~~~~~~rl~e~ve~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~pI 150 (487)
T TIGR01578 72 VAGCMPKAQKEEVKDADSEAE-VLGVKAIERLKELVEEILKRRSVQLLANKKKVLEESEAKTLLKEPEPRKNPLIEILPI 150 (487)
T ss_pred EEECCCCHHHHHHHHCCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEHHCCCCCCHHCCCHHHHCCCCCCCCCC
T ss_conf 970244000123330353000-0000211578998877641023320268700110331310003202314677555543
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCC-CCHHHH-HHHCCCCC
Q ss_conf 2332446811100122137641005889998876310133105873145411341134443100-021678-86204443
Q gi|255764472|r 183 QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT-FSDLLY-SLSEIKGL 260 (469)
Q Consensus 183 ~~GC~~~CsfC~ip~~RG~~rSr~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y~g~~~~~~~~~-l~~Ll~-~l~~i~~~ 260 (469)
++||.+.||||+++.|||+++|+|+|+|+++|+.++..|+|||||||||+++| |.|+. .+ |++||+ .+.+|+|.
T Consensus 151 ~~GC~~~CsYCi~K~ARG~L~S~PpEkiV~~ar~l~~~G~kEI~iTs~DT~~Y-G~DiG---~~kLPeLL~~~~t~I~g~ 226 (487)
T TIGR01578 151 NQGCLGNCSYCITKIARGKLASYPPEKIVEKARELVAEGAKEIWITSQDTAAY-GKDIG---ERKLPELLRRLITEIPGD 226 (487)
T ss_pred CCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCC-CCCCC---CCCCHHHHHHHHHHCCCC
T ss_conf 66635688754677764452488722568999999970531265134466634-42237---621279999998625993
Q ss_pred CCCCCCCCCCCCC---CCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEC
Q ss_conf 0013544210001---0003665202211122013321114578998730333441146789998740134432000001
Q gi|255764472|r 261 VRLRYTTSHPRDM---SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIV 337 (469)
Q Consensus 261 ~riR~~s~~P~~~---~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~~~r~~~p~~~i~tdiIv 337 (469)
+++|+||+||..+ -|+|++++.+++++++|||+|||||||.||+.|||.|++++|.++|+.+|+.+|+++|+|||||
T Consensus 227 F~~RVGMmnP~~~~~IldeL~~v~~~h~kV~kFLHlPvQSGsD~VL~~M~R~y~v~~f~~Iv~~FR~~~~~~tl~TDiIv 306 (487)
T TIGR01578 227 FRLRVGMMNPKNVLEILDELIEVFQSHDKVYKFLHLPVQSGSDSVLKEMKREYTVDDFEDIVEKFRERFPDLTLSTDIIV 306 (487)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEE
T ss_conf 27876258876334788999999854882000115420158758897448565257789999999876268647300167
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEECCCHHHHHCCCCCCHHHHHHHHHHHH----------------------
Q ss_conf 3522012478988633221011100200001112012321436889899999999999----------------------
Q gi|255764472|r 338 GFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQ---------------------- 395 (469)
Q Consensus 338 GfPgETeedf~~Tl~~i~~~~~~~~~vf~yS~r~gT~Aa~m~~qV~~~vk~~R~~~l~---------------------- 395 (469)
|||+||||||++||++++++||+++||.+|||||||+||+|+ ++|.+++++|+++|.
T Consensus 307 GFp~EtdddFE~T~~l~~k~RPe~In~~~fS~RpgT~Aa~~~-~~~~~i~K~Rs~~l~dlfysyePyadrvGeiytvlvt 385 (487)
T TIGR01578 307 GFPTETDDDFEETMELLRKYRPEKINVTKFSPRPGTEAAKMK-RLDTNIKKKRSKALTDLFYSYEPYADRVGEIYTVLVT 385 (487)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHC-CCCCCEEHHHHHHHHHHHHHCCCCCCCCCCEEEEEEE
T ss_conf 178988355899999999828983453024688887113305-8996201166677776542026300122415778775
Q ss_pred -------------HHHHHHHHHHHHHHCCCEEEEEEECCCC--CCCE-EEEECCCC----------CEEEECCCC---CC
Q ss_conf -------------9999999999998579789999842568--0868-99998786----------288973887---67
Q gi|255764472|r 396 -------------KKLREQQVSFNDACVGQIIEVLIEKHGK--EKGK-LVGRSPWL----------QSVVLNSKN---HN 446 (469)
Q Consensus 396 -------------~~~~~~~~~~~~~~iG~~~~Vlve~~~~--~~~~-~~G~t~~~----------~~V~~~~~~---~~ 446 (469)
++.+++....++++||++..|||.+.++ ..|. ..++..+| .+|++.+.. ..
T Consensus 386 evshdklhyvGhnk~~~~~~~~~~~~~iG~~~~Vlv~~asKy~g~G~~~~~~d~~~rCaknqelPn~~Vv~~~~~dhGl~ 465 (487)
T TIGR01578 386 EVSHDKLHYVGHNKLKEEVLLEKKENLIGKREKVLVTEASKYEGKGDSLKDEDDAYRCAKNQELPNRQVVISEKTDHGLE 465 (487)
T ss_pred EEECCCEEECCHHHHHHHHHCCHHHCCCCCCEEEEEEECCCCCCCCCEECCCHHHHHHHHCCCCCCCCEEEECCCCCCCC
T ss_conf 31013101114056788751000110564010489973121024243144641456533105689854587248665664
Q ss_pred CCCEEEEEEEEEECCEEEEEEE
Q ss_conf 6888999999830873899994
Q gi|255764472|r 447 IGDIIKVRITDVKISTLYGELV 468 (469)
Q Consensus 447 ~G~~v~V~I~~~~~~~L~G~vi 468 (469)
+|+|.+|+||++...+|+|++|
T Consensus 466 ~gef~~V~iT~~~~~~l~g~~i 487 (487)
T TIGR01578 466 PGEFAKVEITGAKTVYLIGRII 487 (487)
T ss_pred CCCEEEEEEECCCEEEEEEECC
T ss_conf 4330127896231034455309
No 7
>KOG2492 consensus
Probab=100.00 E-value=0 Score=635.35 Aligned_cols=441 Identities=37% Similarity=0.629 Sum_probs=403.5
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHCCCEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 60799995798568878999999999879868776010889999278325079999999999999876766421898189
Q gi|255764472|r 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLV 103 (469)
Q Consensus 24 ~kkv~i~TlGC~~N~~Dse~i~~~L~~~G~~~~~~~~~ADviiINTCsV~~~ae~k~~~~i~~~~~~~~~~~k~~p~~~I 103 (469)
.+|||++||||+||..|+|+.+++|++.||..++++++||||.++||++++.||+++++.+..+++++.++-+.. ..+|
T Consensus 72 gRkv~~etYGCQMNvnD~Eiv~sIl~~~Gy~~~~~~e~Advill~TCsiRe~AEq~iwnrL~~~ra~k~~~~~~r-pl~v 150 (552)
T KOG2492 72 GRKVYLETYGCQMNVNDTEIVWSILKKSGYLRSDKPEEADVILLVTCSIREGAEQRIWNRLKLLRALKVNRPTSR-PLRV 150 (552)
T ss_pred CCEEEEEEEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCC-CCEE
T ss_conf 847999973003215419999999976284004785657679999831102378999999999987631476678-8567
Q ss_pred EEECCCCCCCHHHHHHHHCCCCCCCCCHHHCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf 99647301087889874100110011001113168887530597002355441124443333345756777725787412
Q gi|255764472|r 104 VVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQ 183 (469)
Q Consensus 104 vVtGC~aq~~~e~l~~~~p~vd~vig~~~~~~i~~~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ikI~ 183 (469)
.|-||||++..+++++...-||++.|++.+.+||.++.....|...++.....++.+-+..+.... .+...|||.|.
T Consensus 151 ~vLGCMAERlk~~iL~~~kmVdivaGPDaYrDLPrll~~~~~g~~~in~~Lsldetyadv~pvr~~---~~s~tAFvSiM 227 (552)
T KOG2492 151 GVLGCMAERLKEKILEREKMVDIVAGPDAYRDLPRLLAVARGGQNGINVLLSLDETYADVQPVRVS---SSSTTAFVSIM 227 (552)
T ss_pred EEEHHHHHHHHHHHHHHHHCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHCCCCEEECC---CCCCHHHHHHH
T ss_conf 740656999999975054232443175033016889999851677635898614011025404516---76633479887
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCC---------------------C
Q ss_conf 3324468111001221376410058899988763101331058731454113411344---------------------4
Q gi|255764472|r 184 EGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD---------------------G 242 (469)
Q Consensus 184 ~GC~~~CsfC~ip~~RG~~rSr~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y~g~~~~---------------------~ 242 (469)
|||++-||||++|++||+.||||++.|++|++.|.++|+||+.|.|||+++|++..-. .
T Consensus 228 RGCdNMCtyCiVpftrGreRsrpi~siv~ev~~L~~qG~KeVTLLGQNVNSyrD~s~~~~~~a~~~~~~~GFst~yK~K~ 307 (552)
T KOG2492 228 RGCDNMCTYCIVPFTRGRERSRPIESIVEEVKRLAEQGVKEVTLLGQNVNSYRDNSAVQFSSAVPTNLSPGFSTVYKPKQ 307 (552)
T ss_pred HCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHCCCCCCCCCCCCEEEECCCC
T ss_conf 56455445587752577545774689999998776547403663014544334442656324786666888401211467
Q ss_pred CCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 31000216788620444300135442100010003665202211122013321114578998730333441146789998
Q gi|255764472|r 243 EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRI 322 (469)
Q Consensus 243 ~~~~l~~Ll~~l~~i~~~~riR~~s~~P~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~~~ 322 (469)
.+..|++||++++......|+||.|.||++++|+++++|.+.+.+|+.+|+|.||||.++|+.|+|+|+++.|++++.++
T Consensus 308 gGl~Fa~LLd~vs~~~PemR~RFTSPHPKDfpdevl~li~~rdnickqihlPAqSgds~vLE~mrRgysreayl~lv~~I 387 (552)
T KOG2492 308 GGLRFAHLLDQVSRADPEMRIRFTSPHPKDFPDEVLELIRDRDNICKQIHLPAQSGDSRVLEIMRRGYSREAYLELVAHI 387 (552)
T ss_pred CCCCHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHCCCHHHEEECCCCCCCHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 88408999998865286507873699987773999999881753142242566688548999987057867653477778
Q ss_pred HHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEECCCHHHH-HCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 740134432000001352201247898863322101110020000111201232-1436889899999999999999999
Q gi|255764472|r 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS-NMLEQVDENVKAERLLCLQKKLREQ 401 (469)
Q Consensus 323 r~~~p~~~i~tdiIvGfPgETeedf~~Tl~~i~~~~~~~~~vf~yS~r~gT~Aa-~m~~qV~~~vk~~R~~~l~~~~~~~ 401 (469)
|+.+|++.++.|||.||.|||||||++|+.++++++++.+..|+||-|++|.|+ +++|.||.++|.+|+.+|...+.+-
T Consensus 388 rs~iPgVglssdfitgfCgeTeedhq~t~sLlrqVgYdv~~lFaysmR~kT~ay~r~~ddvpeeVKnrrl~~Li~~Fre~ 467 (552)
T KOG2492 388 RSMIPGVGLSSDFITGFCGETEEDHQYTVSLLRQVGYDVVFLFAYSMREKTRAYHRLKDDVPEEVKNRRLFELITFFREE 467 (552)
T ss_pred HHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEECCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 86588876323257405678727789999999985537366677653144145565236651778877799999999998
Q ss_pred HHHHHHHHCCCEEEEEEECCCCCC-CEEEEECCCCCEEEECCC------------CCCCCCEEEEEEEEEECCEEEEEEE
Q ss_conf 999999857978999984256808-689999878628897388------------7676888999999830873899994
Q gi|255764472|r 402 QVSFNDACVGQIIEVLIEKHGKEK-GKLVGRSPWLQSVVLNSK------------NHNIGDIIKVRITDVKISTLYGELV 468 (469)
Q Consensus 402 ~~~~~~~~iG~~~~Vlve~~~~~~-~~~~G~t~~~~~V~~~~~------------~~~~G~~v~V~I~~~~~~~L~G~vi 468 (469)
...+++..+|.++.||+|..++.. ..++|+.+.|..|.|+.. ...+|+++.|+|+.+..-.|+|..+
T Consensus 468 A~~~~d~lvgc~Qlvlveg~sKrs~t~~~gr~d~~~kv~f~~a~~~~~~~~~~r~~~~igd~~~v~i~~a~~~~l~g~~l 547 (552)
T KOG2492 468 AIKFNDGLVGCTQLVLVEGKSKRSATDLCGRNDGNLKVIFPDAEMEDVNNPGLRVRAGPGDYVLVKITDSNSQTLKGQLL 547 (552)
T ss_pred HHHHHCCCCCCCCEEEEECHHHHHHHHHHCCCCCCEEEEECHHHHCCCCCCCCEECCCCCCCEEEEEEHHHHHHHHCCHH
T ss_conf 88875358652100011024566688872666888089840076437999872004573001245432013656405401
No 8
>KOG4355 consensus
Probab=100.00 E-value=0 Score=605.92 Aligned_cols=423 Identities=29% Similarity=0.486 Sum_probs=379.4
Q ss_pred CCCCC--EEEEEEECCCCCCHHHHHHHHHHHHHCCCEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 45776--0799995798568878999999999879868776010889999278325079999999999999876766421
Q gi|255764472|r 20 QCIVP--QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKE 97 (469)
Q Consensus 20 ~~~~~--kkv~i~TlGC~~N~~Dse~i~~~L~~~G~~~~~~~~~ADviiINTCsV~~~ae~k~~~~i~~~~~~~~~~~k~ 97 (469)
++.+| +|+||.|+||.+|+.|||.|+++|.+.||.+++ +++||+.++|||+|++++++-+++.|.+.++-
T Consensus 48 ~s~ipgtqki~iktwgcshnnsdseymagqlaaygy~lte-~eeadlwllnsctvknpsed~frn~i~~g~~~------- 119 (547)
T KOG4355 48 SSKIPGTQKIYIKTWGCSHNNSDSEYMAGQLAAYGYALTE-PEEADLWLLNSCTVKNPSEDAFRNLITRGRSG------- 119 (547)
T ss_pred CCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCC-CCCCCEEEECCCCCCCCHHHHHHHHHHHHHCC-------
T ss_conf 5638986479998634567886267776668765212478-23046787503213793188899998865417-------
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHCCCCCCCCCHHHCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 89818999647301087889874100110011001113168887530597002355441124443333345756777725
Q gi|255764472|r 98 GGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLERARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVT 177 (469)
Q Consensus 98 ~p~~~IvVtGC~aq~~~e~l~~~~p~vd~vig~~~~~~i~~~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (469)
+.++|++||.||..|+ +..+.+++ |+|.+.++++.++++....|..+-..... .+...+.+.-|+++..
T Consensus 120 --~k~~viagcvpqg~p~--~dyl~gls-vigvqqidrvvevveetlkghsvrll~rr------~~galdlpkvrknpli 188 (547)
T KOG4355 120 --KKPLVIAGCVPQGSPD--LDYLEGLS-VIGVQQIDRVVEVVEETLKGHSVRLLTRR------TLGALDLPKVRKNPLI 188 (547)
T ss_pred --CCCEEEEECCCCCCCC--HHHHCCCE-EEEHHHHHHHHHHHHHHHCCCEEEEEECC------CCCCCCCHHHCCCCCE
T ss_conf --9866997147788954--25553834-75034566899999987446457632001------4454676222148865
Q ss_pred EEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCCCHHHHHHHC-
Q ss_conf 7874123324468111001221376410058899988763101331058731454113411344431000216788620-
Q gi|255764472|r 178 AFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE- 256 (469)
Q Consensus 178 a~ikI~~GC~~~CsfC~ip~~RG~~rSr~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y~g~~~~~~~~~l~~Ll~~l~~- 256 (469)
-+|.|+.||.+.|+||.++.+||.+-|+|++++++.++...+.|++||||++.|+++| |+|+. .+++.|++++.+
T Consensus 189 eIi~intgclgaCtyckTkharg~l~sy~~dslvervrt~f~egv~eIwltsedTgay-grdig---~slp~ll~klv~~ 264 (547)
T KOG4355 189 EIISINTGCLGACTYCKTKHARGLLASYPKDSLVERVRTSFEEGVCEIWLTSEDTGAY-GRDIG---KSLPKLLWKLVEV 264 (547)
T ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCHH-HHHHH---HHHHHHHHHHHHH
T ss_conf 8999624554111555650124332547889999999998851747998124543035-54430---0069999999986
Q ss_pred CCCCCCCCCCCCCCCCCCCHH--HHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEE
Q ss_conf 444300135442100010003--665202211122013321114578998730333441146789998740134432000
Q gi|255764472|r 257 IKGLVRLRYTTSHPRDMSDCL--IKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSD 334 (469)
Q Consensus 257 i~~~~riR~~s~~P~~~~~~l--i~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~~~r~~~p~~~i~td 334 (469)
++.--.+|++|.+|..+-+.+ +...-.+++++.+||+|+|||||.||..|+|.|+..++...++.+++..|+++|.||
T Consensus 265 iPe~cmlr~gmTnpP~ilehl~e~a~vlrhp~vYsflhvpvqsgsdsvl~emkreyc~~dfk~Vvd~LterVPgi~IATD 344 (547)
T KOG4355 265 IPESCMLRAGMTNPPYILEHLEEAAFVLRHPRVYSFLHVPVQSGSDSVLTEMKREYCNFDFKIVVDFLTERVPGITIATD 344 (547)
T ss_pred CCHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 53666443158788159988999998764870799983243357436888877787645678899888754798188621
Q ss_pred EECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEECCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
Q ss_conf 00135220124789886332210111002000011120123214368898999999999999999999999998579789
Q gi|255764472|r 335 FIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQII 414 (469)
Q Consensus 335 iIvGfPgETeedf~~Tl~~i~~~~~~~~~vf~yS~r~gT~Aa~m~~qV~~~vk~~R~~~l~~~~~~~~~~~~~~~iG~~~ 414 (469)
+|+||||||+|||++|++++++++|..+|+.+|.||||||||+|+ +||..++++|+++|.+++.. +.-....+|...
T Consensus 345 iIcgFPtETdeDFeeTmeLv~kYKFPslfInQfyPRpGTPAAkmk-ki~a~~vkkRTk~ls~lF~s--y~pYtd~ige~~ 421 (547)
T KOG4355 345 IICGFPTETDEDFEETMELVRKYKFPSLFINQFYPRPGTPAAKMK-KIPAVEVKKRTKALSELFRS--YTPYTDEIGELH 421 (547)
T ss_pred EEECCCCCCHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHH-CCCHHHHHHHHHHHHHHHHH--CCCCCCCCCCEE
T ss_conf 242488871677999999999716854035304799988178652-24379999888999999874--187655225078
Q ss_pred EEEEECCCCCCCEEEEECCCCCEEEECCCCCCCCCEEEEEEEEEECCEEEEEEE
Q ss_conf 999842568086899998786288973887676888999999830873899994
Q gi|255764472|r 415 EVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 (469)
Q Consensus 415 ~Vlve~~~~~~~~~~G~t~~~~~V~~~~~~~~~G~~v~V~I~~~~~~~L~G~vi 468 (469)
+|||.|.+.+.-+++|++..|..|.++.+....|.++.|+|++++.+.++|+++
T Consensus 422 rVlVTEva~Dklh~VgHnksYeQVLvp~~~~~mGt~vevrItsvgkfsm~gep~ 475 (547)
T KOG4355 422 RVLVTEVAADKLHYVGHNKSYEQVLVPLEYCKMGTWVEVRITSVGKFSMIGEPA 475 (547)
T ss_pred EEEEEEEECCCEEEECCCCCEEEEEEECCHHHCCCEEEEEEEEEEEEEEECCCC
T ss_conf 999998622531453156532689842664325634999998511235625513
No 9
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=100.00 E-value=3.9e-38 Score=304.41 Aligned_cols=291 Identities=23% Similarity=0.323 Sum_probs=223.8
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHCCCCCC-CCCHHHCCHHHH
Q ss_conf 0889999278325079999999999999876766421898189996473010878898741001100-110011131688
Q gi|255764472|r 61 DADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV-VGPQTYYRLPEL 139 (469)
Q Consensus 61 ~ADviiINTCsV~~~ae~k~~~~i~~~~~~~~~~~k~~p~~~IvVtGC~aq~~~e~l~~~~p~vd~v-ig~~~~~~i~~~ 139 (469)
+.|+++|.|=|=+-..+.+. ++.+| +.+|+++|+++|-+|...|++.+++.|.+|+| .|+.+.. +.++
T Consensus 68 ~~d~v~i~t~Tps~~~~~~~---a~~~K-------~~~P~~~ivlgG~H~T~~pee~L~~~~~iD~VvrGEgE~t-l~el 136 (472)
T TIGR03471 68 DYDLVVLHTSTPSFPSDVKT---AEALK-------EQNPATKIGFVGAHVAVLPEKTLKQGPAIDFVCRREFDYT-IKEV 136 (472)
T ss_pred CCCEEEEEECCCCHHHHHHH---HHHHH-------HHCCCCEEEEECCCCCCCHHHHHHCCCCEEEEEECCHHHH-HHHH
T ss_conf 69989999258656889999---99999-------7688988999787643689999843897269992646999-9999
Q ss_pred HHHH------------CCCCEECCCCCCCCCCCCCCCCCCCCCCC-----------CCCCEEEEEECCCCCCCCCCCCHH
Q ss_conf 8753------------05970023554411244433333457567-----------777257874123324468111001
Q gi|255764472|r 140 LERA------------RFGKRVVDTDYSVEDKFERLSIVDGGYNR-----------KRGVTAFLTIQEGCDKFCTFCVVP 196 (469)
Q Consensus 140 i~~~------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~a~ikI~~GC~~~CsfC~ip 196 (469)
++.. ..|+.+.+...+....++.++.+.+.+.+ .....+.|..|||||+.|+||..|
T Consensus 137 ~~g~~l~~I~Gi~yr~~dG~Iv~~p~r~~i~dLD~LPf~~p~y~~dL~~~~Y~~~~~~~p~~~i~TSRGCP~~C~FC~~p 216 (472)
T TIGR03471 137 AEGKPLAEIDGLSYRGKDGKIVHNPDRPMIEDMDALPFVAPVYKRDLDIERYFIGYLKHPYISLYTGRGCPSKCTFCLWP 216 (472)
T ss_pred HCCCCHHHCCEEEEECCCCCEEECCCCCCCCHHHHCCCCCHHHHHHCCHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCC
T ss_conf 74998533982599879996887999866100420888762343028986633542458614764179988779687882
Q ss_pred HHH-H-HHHHHHHHHHHHHHHHHHHC--CCCEEEEECCCCCEEEECCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 221-3-76410058899988763101--3310587314541134113444310002167886204443001354421000
Q gi|255764472|r 197 YTR-G-IEISRSLSQVVDEARKLIDN--GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD 272 (469)
Q Consensus 197 ~~R-G-~~rSr~~~~Iv~ei~~l~~~--G~kEi~L~g~d~~~Y~g~~~~~~~~~l~~Ll~~l~~i~~~~riR~~s~~P~~ 272 (469)
.+. | ++|.|++++|++|++.+.+. |+++|.+. ++.+..++..+.++|+.|.++ ++.|--... ..
T Consensus 217 ~~~~Gr~~R~RSpe~VvdEIe~l~~~y~gv~~~~f~--------DD~Ft~~~~r~~eic~~i~~l-~i~W~~~~R---v~ 284 (472)
T TIGR03471 217 QTVGGHRYRTRSAESVIEEVKYALENFPEVREFFFD--------DDTFTDDKPRAEEIARKLGPL-GVTWSCNAR---AN 284 (472)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEE--------CCCCCCCHHHHHHHHHHHHHC-CCEEEEEEE---CC
T ss_conf 102688662159999999999999866897589994--------776678999999999999876-982787630---34
Q ss_pred CCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 10003665202211122013321114578998730333441146789998740134432000001352201247898863
Q gi|255764472|r 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352 (469)
Q Consensus 273 ~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~~~r~~~p~~~i~tdiIvGfPgETeedf~~Tl~ 352 (469)
++++++++|++.+ |.++.+++||||+++|+.||++.+.++..++++.++++ |+.+.+.||+||||||.|++++|++
T Consensus 285 ~d~E~l~~mk~AG--c~~v~~GiESgsq~iL~~i~K~~t~e~~~~av~~~k~~--GI~v~~~FIiG~PgET~Eti~~Ti~ 360 (472)
T TIGR03471 285 VDYETLKVMKENG--LRLLLVGYESGDQQILKNIKKGLTVEIARRFTRDCHKL--GIKVHGTFILGLPGETRETIRKTID 360 (472)
T ss_pred CCHHHHHHHHHHC--CEEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHC--CCEEEEEEEECCCCCCHHHHHHHHH
T ss_conf 8999999999839--84899803758999999853899899999999988757--9879999987799998899999999
Q ss_pred HHHHHHHHHCCCHHEEECCCHHHHHC
Q ss_conf 32210111002000011120123214
Q gi|255764472|r 353 LVDKIGYAQAFSFKYSPRLGTPGSNM 378 (469)
Q Consensus 353 ~i~~~~~~~~~vf~yS~r~gT~Aa~m 378 (469)
|++++++|.++++.+.|-|||+.+.+
T Consensus 361 fa~~l~~d~~~~si~tPyPGT~ly~~ 386 (472)
T TIGR03471 361 FAKELNPHTIQVSLAAPYPGTELYDQ 386 (472)
T ss_pred HHHHCCCCEEEEEEECCCCCCHHHHH
T ss_conf 99975989089987258899699999
No 10
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=99.96 E-value=1.4e-29 Score=240.41 Aligned_cols=209 Identities=33% Similarity=0.535 Sum_probs=168.6
Q ss_pred EEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCCCHHHHHHHC
Q ss_conf 57874123324468111001221376410058899988763101331058731454113411344431000216788620
Q gi|255764472|r 177 TAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256 (469)
Q Consensus 177 ~a~ikI~~GC~~~CsfC~ip~~RG~~rSr~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y~g~~~~~~~~~l~~Ll~~l~~ 256 (469)
.+.+.++|||+++|+||.++...|+.|.++++.+++|++.+.+.|.+.+.+.....+ + +.........+.++++.+.+
T Consensus 2 ~~~~~~sRGC~~~C~fC~~~~~~~~~~~~~~~~i~~ei~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~i~~ 79 (216)
T smart00729 2 LALYIITRGCPRRCTFCSFPSARGKLRSRYLEALVREIELLAEKGEKEILVGTVFIG-G-GTPTLLSPEQLEELLEAIRE 79 (216)
T ss_pred EEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEC-C-CCCCCCCHHHHHHHHHHHHH
T ss_conf 799999878198484298175889645759999999999999708976530011002-4-68988899999999999998
Q ss_pred CCCCCC-C-CCCCCCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCC-CCCCE
Q ss_conf 444300-1-35442100010003665202211122013321114578998730333441146789998740134-43200
Q gi|255764472|r 257 IKGLVR-L-RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD-IAISS 333 (469)
Q Consensus 257 i~~~~r-i-R~~s~~P~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~~~r~~~p~-~~i~t 333 (469)
..+... . ...+++|..+++++++.|++.+ +.++.+++||||+++|+.|+|+++.+++.++++.++++ + +.+.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~e~l~~l~~~g--~~~v~~giEs~~~~~l~~i~k~~~~~~~~~~i~~~~~~--g~~~~~~ 155 (216)
T smart00729 80 ILGLADDVEITIETRPGTLTEELLEALKEAG--VNRVSLGVQSGSDEVLKAINRGHTVEDVLEAVEKLREA--GPIKVST 155 (216)
T ss_pred HCCCCCCEEEEEECCCCCCCHHHHHHHHHCC--CCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHH--CCCEEEE
T ss_conf 5143562699997060215899999999849--98666673550789998717999999999999999985--8936877
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEECCCHHHHHCCCCCCHHHHHHHH
Q ss_conf 0001352201247898863322101110020000111201232143688989999999
Q gi|255764472|r 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERL 391 (469)
Q Consensus 334 diIvGfPgETeedf~~Tl~~i~~~~~~~~~vf~yS~r~gT~Aa~m~~qV~~~vk~~R~ 391 (469)
++|+|+||||+|++.+|++|+.+.+++.+++++|+|.||||.+.+..+++...+.++.
T Consensus 156 ~~i~GlP~et~e~~~~t~~~~~~~~~~~i~~~~~~p~pgT~~~~~~~~~~~~~~~~~~ 213 (216)
T smart00729 156 DLIVGLPGETEEDFEETLKLLKELGPDRVSIFPLSPRPGTPLAKLYKRLKPPDKEERL 213 (216)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCEECCCCHHHHCCCCCCHHHHHHHH
T ss_conf 5786799999999999999999469198998748756998466501629888999999
No 11
>COG1032 Fe-S oxidoreductase [Energy production and conversion]
Probab=99.95 E-value=3.1e-26 Score=215.54 Aligned_cols=331 Identities=23% Similarity=0.333 Sum_probs=216.2
Q ss_pred HHHHHHHHHHCCCEE------CCCC------------CCCCEEEEECCCC-CHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 999999999879868------7760------------1088999927832-50799999999999998767664218981
Q gi|255764472|r 41 SLRMEDMFFSQGYER------VNSM------------DDADLIVLNTCHI-REKAAEKVYSFLGRIRNLKNSRIKEGGDL 101 (469)
Q Consensus 41 se~i~~~L~~~G~~~------~~~~------------~~ADviiINTCsV-~~~ae~k~~~~i~~~~~~~~~~~k~~p~~ 101 (469)
--.+.+.|...|+.. ..+. ..++.+.+..+.- ......+. ...++ +..++.
T Consensus 34 ~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-------~~~~~~ 103 (490)
T COG1032 34 LRKLAAVLERAGKPNLFFDVVAGEPDSLENLLDALKKIRADLIGVSDPLGGLRPDALKL---VAKAR-------GRRDKP 103 (490)
T ss_pred HHHHHHHHHHCCCCCCCCEECCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHH---HHHHH-------CCCCCC
T ss_conf 89987788764775212300015775455445430352223899641210003146888---99873-------046898
Q ss_pred EEEEECCCCCCCHHHHHHHHCCCCCC-CCCHHHCCHHHHHHHHCCCCEE--------CCCCCCCC-CCC-----CCCCCC
Q ss_conf 89996473010878898741001100-1100111316888753059700--------23554411-244-----433333
Q gi|255764472|r 102 LVVVAGCVAQAEGEEILRRSPIVNVV-VGPQTYYRLPELLERARFGKRV--------VDTDYSVE-DKF-----ERLSIV 166 (469)
Q Consensus 102 ~IvVtGC~aq~~~e~l~~~~p~vd~v-ig~~~~~~i~~~i~~~~~g~~~--------~~~~~~~~-~~~-----~~~~~~ 166 (469)
.|+++|-.|...+++++...| +|++ +|.++.. ++++++....+... ........ ... ......
T Consensus 104 ~v~~GG~~~t~~~~~~~~~~~-~D~iv~GeGE~~-~~~~~~~~~~~~~~~~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (490)
T COG1032 104 LVVVGGPEATENPEPLLDFGP-ADIIVIGEGEET-LPELLEALEEGEDDPRVPGLALPSFEEIVYDQDLDDVPIPAYDLV 181 (490)
T ss_pred EEEECCCCCCCCHHHHHHHCC-CCEEEECCCHHH-HHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 799758566668899997568-888998973899-999999986057644567424335210113555455765541233
Q ss_pred C-------CCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECC
Q ss_conf 4-------575677772578741233244681110012213764100588999887631013310587314541134113
Q gi|255764472|r 167 D-------GGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKG 239 (469)
Q Consensus 167 ~-------~~~~~~~~~~a~ikI~~GC~~~CsfC~ip~~RG~~rSr~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y~g~~ 239 (469)
. ++..........|+|+|||+++|+||.++... +.|+++++.+++|++.+++.|.+++++...|+..|++.+
T Consensus 182 ~~~~~~~~p~~~~~~~~~~~ve~~RGCp~~C~FC~~~~~~-~~r~~~~~~v~~ei~~~~~~~~~~~~~~~~~~f~~~~~~ 260 (490)
T COG1032 182 DDHKRDDLPPYGAGENRAFSVETSRGCPRGCRFCSITKHF-KYRRRRPERVVEEIKELIEEGGKRVVFFVDDIFLYGSPA 260 (490)
T ss_pred CCCCCCCCCCHHCCCCCEEEEEEECCCCCCCCCCCCCCCC-CCCCCCHHHHHHHHHHHHHHHHHCCCEECCCEEECCCCC
T ss_conf 5444344782120577269999978888899888886114-600578899999999999987321450235577447854
Q ss_pred CCCCCCCCCHHHHHHHCCC--CCCCC--CCCCCCCCCCC-CHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCH
Q ss_conf 4443100021678862044--43001--35442100010-0036652022111220133211145789987303334411
Q gi|255764472|r 240 LDGEKCTFSDLLYSLSEIK--GLVRL--RYTTSHPRDMS-DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314 (469)
Q Consensus 240 ~~~~~~~l~~Ll~~l~~i~--~~~ri--R~~s~~P~~~~-~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R~~~~e~ 314 (469)
.. ....+..|...+.+.. +..++ -+.++.|+.++ ++++..++..+ +..+.+++||||+++|+.|+|+++.++
T Consensus 261 ~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~d~~~~~~~~~~~~~~g--~~~~~iG~Esgs~~~l~~~~k~~~~~~ 337 (490)
T COG1032 261 LN-DEKRFELLSLELIERGLRKGCRVHISAPSLRADTVTDEELLKLLREAG--LRRVYIGIESGSEELLKKINKGITTEE 337 (490)
T ss_pred CC-HHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHHHHCC--CEEEEEECCCCCHHHHHHHHCCCCHHH
T ss_conf 34-167888879999986304676035752300334378799999987649--436999658999999998614788688
Q ss_pred HHH-HHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHH---HHHHHHHHHH-HCCCHHEEECCCHHHHHCCCCCCHHHHHH
Q ss_conf 467-899987401344320000013522012478988---6332210111-00200001112012321436889899999
Q gi|255764472|r 315 YRQ-IIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT---MDLVDKIGYA-QAFSFKYSPRLGTPGSNMLEQVDENVKAE 389 (469)
Q Consensus 315 ~~~-~i~~~r~~~p~~~i~tdiIvGfPgETeedf~~T---l~~i~~~~~~-~~~vf~yS~r~gT~Aa~m~~qV~~~vk~~ 389 (469)
..+ +++.+++. +.....++|+|+||||++|+.+| ++++++.... ++.+..|+|-|||+...+. +-....+.+
T Consensus 338 ~~~~a~~~~~~~--~~~~~~~~i~G~pget~ed~~~t~~~~~~~~~~~~~~~~~~~~~~p~p~t~~~~~~-~~~~~~~~~ 414 (490)
T COG1032 338 VLEEAVKIAKEH--GLRVKLYFIVGLPGETEEDVKETIELAKFIKKLGPKLYVSPSPFVPLPGTPLQEMP-KLENELLKR 414 (490)
T ss_pred HHHHHHHHHHHC--CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCHHHCC-CCCCHHHHH
T ss_conf 899999999867--98617999982799997999999999999987186745887641646988413224-532012322
Q ss_pred H
Q ss_conf 9
Q gi|255764472|r 390 R 390 (469)
Q Consensus 390 R 390 (469)
+
T Consensus 415 ~ 415 (490)
T COG1032 415 R 415 (490)
T ss_pred H
T ss_conf 2
No 12
>pfam00919 UPF0004 Uncharacterized protein family UPF0004. This family is the N terminal half of the Prosite family. The C-terminal half has been shown to be related to MiaB proteins. This domain is a nearly always found in conjunction with pfam04055 and pfam01938 although its function is uncertain.
Probab=99.94 E-value=5.3e-27 Score=221.28 Aligned_cols=98 Identities=40% Similarity=0.715 Sum_probs=93.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHCCCEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 79999579856887899999999987986877601088999927832507999999999999987676642189818999
Q gi|255764472|r 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVV 105 (469)
Q Consensus 26 kv~i~TlGC~~N~~Dse~i~~~L~~~G~~~~~~~~~ADviiINTCsV~~~ae~k~~~~i~~~~~~~~~~~k~~p~~~IvV 105 (469)
||||+||||++|++|||.|.++|.+.||++++++++||++|||||+||++|++|+++.|+++++. ++|+.+|+|
T Consensus 1 kv~i~T~GC~~N~~Dse~i~~~l~~~G~~~~~~~~~AD~iiiNTC~V~~~A~~k~~~~i~~~~~~------~~p~~~iiv 74 (98)
T pfam00919 1 KVYIETLGCQMNQADSEIMAGLLKKAGYELVDDPEEADVVVVNTCAVREKAEQKSRQTIRRLKRL------KNPDAKIVV 74 (98)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHCCCEECCCHHCCCEEEEEEEECCHHHHHHHHHHHHHHHHH------CCCCCEEEE
T ss_conf 98999679987699999999999987898858710099899996131128999999999999984------299988999
Q ss_pred ECCCCCCCHHHHHHHHCCCCCCCC
Q ss_conf 647301087889874100110011
Q gi|255764472|r 106 AGCVAQAEGEEILRRSPIVNVVVG 129 (469)
Q Consensus 106 tGC~aq~~~e~l~~~~p~vd~vig 129 (469)
+|||||++++++++.+|+||+|+|
T Consensus 75 ~GC~aq~~~e~l~~~~p~VD~v~G 98 (98)
T pfam00919 75 TGCMAQRYPEELLKEIPEVDLVLG 98 (98)
T ss_pred EEECCCCCHHHHHHHCCCCCEEEC
T ss_conf 985031477999976899619969
No 13
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=99.91 E-value=1.1e-23 Score=196.44 Aligned_cols=197 Identities=18% Similarity=0.317 Sum_probs=158.3
Q ss_pred EEECCCCCCCCCCCCHHHHHHHH--HHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCCCHHHHHHHCC
Q ss_conf 74123324468111001221376--4100588999887631013310587314541134113444310002167886204
Q gi|255764472|r 180 LTIQEGCDKFCTFCVVPYTRGIE--ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257 (469)
Q Consensus 180 ikI~~GC~~~CsfC~ip~~RG~~--rSr~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y~g~~~~~~~~~l~~Ll~~l~~i 257 (469)
+++++||+++|+||.+|...|+. ++.+.+++.++++.+...|++.+.++|-|...+ ..+.++++.+.+.
T Consensus 1 i~~srGC~~~C~fC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~---------~~~~~~l~~~~~~ 71 (204)
T cd01335 1 LELTRGCNLNCGFCSNPASKGRGPESPPEIEEILDIVLEAKERGVEVVILTGGEPLLY---------PELAELLRRLKKE 71 (204)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCC---------CCCCHHHHHHHHC
T ss_conf 9216373856987998754798756678899999999999875986999724676666---------5321013545530
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHC-CCCCCCHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 44300135442100010003665202211122013321114578998730-33344114678999874013443200000
Q gi|255764472|r 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN-RRHTAYEYRQIIDRIRSVRPDIAISSDFI 336 (469)
Q Consensus 258 ~~~~riR~~s~~P~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~-R~~~~e~~~~~i~~~r~~~p~~~i~tdiI 336 (469)
....++.+. .++..+++++++.+++.+ +..+.+++||+|+++++.|+ ++++.+++.+.++.+++. ++.+.+++|
T Consensus 72 ~~~~~i~~~-t~~~~~~~~~l~~l~~~g--~~~~~i~les~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~i 146 (204)
T cd01335 72 LPGFEISIE-TNGTLLTEELLKELKELG--LDGVGVSLDSGDEEVADKIRGSGESFKERLEALKELREA--GLGLSTTLL 146 (204)
T ss_pred CCCCEEEEE-ECCCCCCHHHHHHHHHCC--CCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHC--CCEEEEEEE
T ss_conf 687179998-336547699987754037--542222435689999999848899759999999999867--998999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHH-HHHCCCHHEEECCCHHHHHCCCCCCHHHHHHH
Q ss_conf 1352201247898863322101-11002000011120123214368898999999
Q gi|255764472|r 337 VGFPGETDDDFRATMDLVDKIG-YAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390 (469)
Q Consensus 337 vGfPgETeedf~~Tl~~i~~~~-~~~~~vf~yS~r~gT~Aa~m~~qV~~~vk~~R 390 (469)
+|+|+||++++.+|++++.+.. ++.+++++|+|.||||+..+...++.....+.
T Consensus 147 ~G~p~et~~~~~~~~~~~~~~~~~~~~~~~~~~p~~gt~~~~~~~~~~~~~~~~~ 201 (204)
T cd01335 147 VGLGDEDEEDDLEELELLAEFRSPDRVSLFRLLPEEGTPLELAAPVVPAEKLLRL 201 (204)
T ss_pred ECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHCCCCCCHHHHHHH
T ss_conf 8279999999999999998518998898987662289803338797999999998
No 14
>COG1031 Uncharacterized Fe-S oxidoreductase [Energy production and conversion]
Probab=99.87 E-value=2.9e-20 Score=171.02 Aligned_cols=285 Identities=19% Similarity=0.295 Sum_probs=198.0
Q ss_pred CEEEEEECCCCCCC----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECC-CCCEEEECCCCC-----CCC
Q ss_conf 25787412332446----81110012213764100588999887631013310587314-541134113444-----310
Q gi|255764472|r 176 VTAFLTIQEGCDKF----CTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ-NVNAWRGKGLDG-----EKC 245 (469)
Q Consensus 176 ~~a~ikI~~GC~~~----CsfC~ip~~RG~~rSr~~~~Iv~ei~~l~~~G~kEi~L~g~-d~~~Y~g~~~~~-----~~~ 245 (469)
..+=|+.+|||+++ ||||.-|. ||...+||+++|++||+.|.+.|++.+.|--| |+-+|.+.+..+ ++.
T Consensus 183 vi~EiETyRGC~r~~~ggCSFCtEp~-~g~~~~R~~e~Vv~EVkaLY~~GvrhFRlGRQ~difsy~~~~~g~e~P~PnPe 261 (560)
T COG1031 183 VICEIETYRGCPRRVSGGCSFCTEPV-RGRPEFRPPEDVVEEVKALYRAGVRHFRLGRQADIFSYGADDNGGEVPRPNPE 261 (560)
T ss_pred EEEEEEECCCCCCCCCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCEEEECCCCCCCCCCCCCHH
T ss_conf 79998513687320368875416757-68846589899999999999706030561565410112156568879999989
Q ss_pred CCCHHHHHHHCC-CCCCCCCCCCCCCCCCC------CHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHH
Q ss_conf 002167886204-44300135442100010------00366520221112201332111457899873033344114678
Q gi|255764472|r 246 TFSDLLYSLSEI-KGLVRLRYTTSHPRDMS------DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 (469)
Q Consensus 246 ~l~~Ll~~l~~i-~~~~riR~~s~~P~~~~------~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~ 318 (469)
.+.+|.+.+... +++.-+++-..||..+- .++++.+.....==.-.-++++|++++|.+.=|=..+.|+++++
T Consensus 262 alekL~~Gir~~AP~l~tLHiDNaNP~tIa~yp~eSr~i~K~ivky~TpGnVaAfGlEsaDp~V~r~NnL~~spEEvl~A 341 (560)
T COG1031 262 ALEKLFRGIRNVAPNLKTLHIDNANPATIARYPEESREIAKVIVKYGTPGNVAAFGLESADPRVARKNNLNASPEEVLEA 341 (560)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCHHHHCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHCCCCCCHHHHHHH
T ss_conf 99999999986189872665458995644158488999999998647987554330454687787640566998999999
Q ss_pred HHHHHHH--------CCCCCCCEEEECCCCCCHHHHHHHHHHHHHHH-----HHHHCCCHHEEECCCHHHHHCCCCCCHH
Q ss_conf 9998740--------13443200000135220124789886332210-----1110020000111201232143688989
Q gi|255764472|r 319 IDRIRSV--------RPDIAISSDFIVGFPGETDDDFRATMDLVDKI-----GYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 (469)
Q Consensus 319 i~~~r~~--------~p~~~i~tdiIvGfPgETeedf~~Tl~~i~~~-----~~~~~~vf~yS~r~gT~Aa~m~~qV~~~ 385 (469)
|+.+.+. +|.+--+-+||.|.||||.|.|+-+.+|++++ ..-++||=+--+=||||.+.+.+. -.+
T Consensus 342 V~ivn~vG~~rg~nGlP~lLPGINfv~GL~GEtkeT~~ln~efL~~ild~gllvRRINIRqV~~fpgT~~~~~~~~-~~~ 420 (560)
T COG1031 342 VEIVNEVGGGRGYNGLPYLLPGINFVFGLPGETKETYELNYEFLKEILDEGLLVRRINIRQVVVFPGTPMWERGKK-KAE 420 (560)
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEECCCCCHHHHHHH-HHH
T ss_conf 9999986476676898420466206733887627778864999999974674689852036763279724665567-888
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHC--CCEEE-EEEECCCCCCCEEEEECC-CCCE-EEECCCCCCCCCEEEEEEEEEE
Q ss_conf 999999999999-9999999999857--97899-998425680868999987-8628-8973887676888999999830
Q gi|255764472|r 386 VKAERLLCLQKK-LREQQVSFNDACV--GQIIE-VLIEKHGKEKGKLVGRSP-WLQS-VVLNSKNHNIGDIIKVRITDVK 459 (469)
Q Consensus 386 vk~~R~~~l~~~-~~~~~~~~~~~~i--G~~~~-Vlve~~~~~~~~~~G~t~-~~~~-V~~~~~~~~~G~~v~V~I~~~~ 459 (469)
..+++.....+. -+++-...+++-+ |+.++ |.+|-+ ..+..+||-. .|.. |-+. .....|.+++|.|+++.
T Consensus 421 khk~~~~~fk~~VRe~iD~~MLkrVvP~GTvLrdv~vE~~--~~~~tfgRQ~GSYPllvgi~-~~~~~g~~~Dv~vvdhG 497 (560)
T COG1031 421 KHKKLFAAFKRKVREEIDLPMLKRVVPKGTVLRDVRVEVY--EGGLTFGRQLGSYPLLVGIP-GRLELGRYVDVVVVDHG 497 (560)
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHCCCCCCEEEEEEEEEE--CCCCEEECCCCCCCEEEECC-CCCCCCCEEEEEEECCC
T ss_conf 8999999999999875299999740798715646899994--28730211357764476303-54557855789995167
Q ss_pred CCEEEE
Q ss_conf 873899
Q gi|255764472|r 460 ISTLYG 465 (469)
Q Consensus 460 ~~~L~G 465 (469)
..+..|
T Consensus 498 ~RSVt~ 503 (560)
T COG1031 498 ARSVTA 503 (560)
T ss_pred CCEEEE
T ss_conf 643540
No 15
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase; InterPro: IPR011772 This entry respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions . This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This entry identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologues of this gene are not found in plants which rely solely on the aerobic cyclase.; GO: 0016709 oxidoreductase activity acting on paired donors with incorporation or reduction of molecular oxygen NADH or NADPH as one donor and incorporation of one atom of oxygen, 0050661 NADP binding, 0015995 chlorophyll biosynthetic process.
Probab=99.87 E-value=7.7e-21 Score=175.29 Aligned_cols=314 Identities=19% Similarity=0.249 Sum_probs=220.6
Q ss_pred HHHHHHHHHCCCEECCCCC------------------CCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 9999999987986877601------------------0889999278325079999999999999876766421898189
Q gi|255764472|r 42 LRMEDMFFSQGYERVNSMD------------------DADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLV 103 (469)
Q Consensus 42 e~i~~~L~~~G~~~~~~~~------------------~ADviiINTCsV~~~ae~k~~~~i~~~~~~~~~~~k~~p~~~I 103 (469)
..|-+.|.++||.-+.-.+ .-|++.+---+.|..- =.+-.++.=++ .+-||+.+
T Consensus 27 ~yigGaL~~AG~~d~~f~DA~~~~l~de~l~e~lr~~~Pd~v~~GhtaiTp~~-y~a~~~lk~~r-------E~lPN~~~ 98 (506)
T TIGR02026 27 AYIGGALKDAGYDDVTFLDAMTDPLTDEKLVERLRAHRPDLVLIGHTAITPAI-YIAEETLKVAR-------ERLPNAII 98 (506)
T ss_pred HHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCH-HHHHHHHHHHH-------HHCCHHHH
T ss_conf 87202667468766377622368887489999997259868997265554201-89999999998-------62443553
Q ss_pred EEECCCCCCCHHHHHHHHCCCCCCC-CCHHHCCHHHHHHHHCCCC------------------EECCC-CCCCCCCCCCC
Q ss_conf 9964730108788987410011001-1001113168887530597------------------00235-54411244433
Q gi|255764472|r 104 VVAGCVAQAEGEEILRRSPIVNVVV-GPQTYYRLPELLERARFGK------------------RVVDT-DYSVEDKFERL 163 (469)
Q Consensus 104 vVtGC~aq~~~e~l~~~~p~vd~vi-g~~~~~~i~~~i~~~~~g~------------------~~~~~-~~~~~~~~~~~ 163 (469)
|.+|-+|.=.-.+++.+.|.+|.|+ |+++.. +.+++.....+. +++.+ ..+.....+.+
T Consensus 99 vlGGihpTf~f~~vLt~~PwID~IVRGEGEe~-~v~L~~A~e~~n~~~dr~kv~GiAfl~de~~iv~T~aap~I~DlD~~ 177 (506)
T TIGR02026 99 VLGGIHPTFMFRQVLTEAPWIDFIVRGEGEEV-VVKLIKALENDNDARDRNKVKGIAFLEDEQKIVETLAAPMIQDLDVL 177 (506)
T ss_pred HHCCCCCCCCHHHHHCCCCCEEEEEECCHHHH-HHHHHHHHHCCCCHHHHHHHCEEEEECCCCCEEECCCCCCCCCCCCC
T ss_conf 42464642021234122882107982773899-99999998536723435450313776278744514876710103300
Q ss_pred ----CCCCC---CCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCEEEEECCCCCEE
Q ss_conf ----33345---7567777257874123324468111001221376410058899988763101-331058731454113
Q gi|255764472|r 164 ----SIVDG---GYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAW 235 (469)
Q Consensus 164 ----~~~~~---~~~~~~~~~a~ikI~~GC~~~CsfC~ip~~RG~~rSr~~~~Iv~ei~~l~~~-G~kEi~L~g~d~~~Y 235 (469)
.+.+. .+...+.-.|.++.+||||+-|+||+=..+.-++|.|+|..+++||..|++. |+.=++|-
T Consensus 178 ~pdW~l~d~K~YiY~pLg~rvav~~faRGCPf~C~fCsQwkFWrryR~RdPkKfvdEI~~L~r~hgVgfF~LA------- 250 (506)
T TIGR02026 178 RPDWELVDWKKYIYYPLGVRVAVPNFARGCPFTCNFCSQWKFWRRYRARDPKKFVDEIEKLVREHGVGFFILA------- 250 (506)
T ss_pred CCCCCEEECCHHEECCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEC-------
T ss_conf 6787355330112227873698731678697655745752044540478861389999999863185336632-------
Q ss_pred EECCCCCCCCCCCHHHHHHHCCCCCCCCCC-CCCCCCCC--CCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCCCC
Q ss_conf 411344431000216788620444300135-44210001--000366520221112201332111457899873033344
Q gi|255764472|r 236 RGKGLDGEKCTFSDLLYSLSEIKGLVRLRY-TTSHPRDM--SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTA 312 (469)
Q Consensus 236 ~g~~~~~~~~~l~~Ll~~l~~i~~~~riR~-~s~~P~~~--~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R~~~~ 312 (469)
+..=+-++..|.++|++|..-.-..+|.+ ++.-..++ |+++|.+....+ .-|+-|+.+.+++.-|+..|+..+.
T Consensus 251 -DEePT~Nr~~f~efCEe~Iar~l~~~v~~ginTRv~Di~RD~~~L~lyR~AG--l~~i~LG~Eaaa~~~Ld~~rK~t~~ 327 (506)
T TIGR02026 251 -DEEPTVNRKKFQEFCEELIARNLQIKVTWGINTRVTDIVRDADLLKLYRRAG--LVHISLGTEAAAQLTLDRFRKETTV 327 (506)
T ss_pred -CCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEECCCHHHHHHHHHHHHHHCC--EEEEHHHHHHHHHHHHHHHCCCCCC
T ss_conf -7887301689999999998578956999965111304240289888888606--0300121004665323121366752
Q ss_pred CHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEECCCHHHH
Q ss_conf 1146789998740134432000001352201247898863322101110020000111201232
Q gi|255764472|r 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 (469)
Q Consensus 313 e~~~~~i~~~r~~~p~~~i~tdiIvGfPgETeedf~~Tl~~i~~~~~~~~~vf~yS~r~gT~Aa 376 (469)
++-+++|+.||++ ++.--+.||+||-.||+|||++|++.+=..+||.++-.=|.|=|=|+-+
T Consensus 328 ~~nkeAIrLlr~h--~i~~~A~fi~g~e~~~~~~~~etyr~~ldw~PD~~~w~~yTPwpft~lf 389 (506)
T TIGR02026 328 SENKEAIRLLRQH--NILSEAQFIVGLENETDETLEETYRQLLDWDPDLANWLMYTPWPFTSLF 389 (506)
T ss_pred HHHHHHHHHHHHC--CCEEEEEEEECCCCCCHHHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHH
T ss_conf 4448999999761--8402100242543587568999999973378332421455898763678
No 16
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=99.75 E-value=2.9e-17 Score=148.54 Aligned_cols=210 Identities=18% Similarity=0.259 Sum_probs=146.1
Q ss_pred CEEEEEECCCCCCCCCCCCHH-HH--HHHHHHHHHHHHHHHHHHHHHC-CCCEEEEECCCCCEEEECCCCC--CCCCCCH
Q ss_conf 257874123324468111001-22--1376410058899988763101-3310587314541134113444--3100021
Q gi|255764472|r 176 VTAFLTIQEGCDKFCTFCVVP-YT--RGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDG--EKCTFSD 249 (469)
Q Consensus 176 ~~a~ikI~~GC~~~CsfC~ip-~~--RG~~rSr~~~~Iv~ei~~l~~~-G~kEi~L~g~d~~~Y~g~~~~~--~~~~l~~ 249 (469)
.+-||-| -=|..+|.||.-. .. +.....+-++.+++|++..... +-..+. +.|.|.|.++ ....+..
T Consensus 46 LsLYiHi-PFC~~~C~YC~f~~~~~~~~~~~~~Y~~aL~~Ei~~~~~~~~~~~~~------tiy~GGGTPS~L~~~~l~~ 118 (436)
T PRK08208 46 LHLYIHI-PFCESRCGFCNLFTCTGADNEFIDSYLDALIRQARQVALALGGVHFA------SFAVGGGTPTLLNIAQLEK 118 (436)
T ss_pred EEEEEEC-CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEE------EEEECCCHHHCCCHHHHHH
T ss_conf 4999870-44079588999837668983389999999999999987663898356------8996794322199999999
Q ss_pred HHHHHHCCCCCC--CCCCC-CCCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHC
Q ss_conf 678862044430--01354-421000100036652022111220133211145789987303334411467899987401
Q gi|255764472|r 250 LLYSLSEIKGLV--RLRYT-TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 (469)
Q Consensus 250 Ll~~l~~i~~~~--riR~~-s~~P~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~~~r~~~ 326 (469)
|+..|.+.-++. .+-++ =++|..++.+-++.+++.+ ..-+-|++||-+|++|+.|||.|+.++..++++.+|++
T Consensus 119 ll~~l~~~f~~~~~~~EiTiE~nP~~~~~~~l~~l~~~G--vNRiSlGVQsf~~~~L~~lgR~h~~~~~~~ai~~~r~~- 195 (436)
T PRK08208 119 LFFSVFDVLGVDLWNIPKSVETSPTTTTAEKLALLNAFG--VNRVSIGVQSFHDSELHALHRRQNAASVHQALELIRAA- 195 (436)
T ss_pred HHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHCC--CCEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHC-
T ss_conf 999999858998467159998663636099999999739--87278741448989999846889999999999999981-
Q ss_pred CCC-CCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEECCCHHHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf 344-32000001352201247898863322101110020000111201232143688989999999999999
Q gi|255764472|r 327 PDI-AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKK 397 (469)
Q Consensus 327 p~~-~i~tdiIvGfPgETeedf~~Tl~~i~~~~~~~~~vf~yS~r~gT~Aa~m~~qV~~~vk~~R~~~l~~~ 397 (469)
++ .++.|+|.|+||+|.++|++|++-+-++.++++.+|...-+|||+-++.. ...++...+-.....+.
T Consensus 196 -gf~niniDLIyGlPgQt~~~~~~~l~~~l~l~p~HIS~Y~L~iep~T~l~~~~-~~~~d~~~~my~~a~~~ 265 (436)
T PRK08208 196 -HFPSLNIDLIYGIPGQTHASFMESLHQALVYRPEELFLYPLYVRPLTGLGRRG-TAWDDNMHSLYVLARDL 265 (436)
T ss_pred -CCCEEEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEECCCCEECCCCCCCCCC-CCCCHHHHHHHHHHHHH
T ss_conf -99857552443699999999999999998279898987633047898301247-98937999999999999
No 17
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=99.75 E-value=4.1e-17 Score=147.47 Aligned_cols=183 Identities=18% Similarity=0.325 Sum_probs=137.4
Q ss_pred CCCCCCCCCCHH--HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCC--CCCCCCHHHHHHHCCCCC
Q ss_conf 324468111001--2213764100588999887631013310587314541134113444--310002167886204443
Q gi|255764472|r 185 GCDKFCTFCVVP--YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIKGL 260 (469)
Q Consensus 185 GC~~~CsfC~ip--~~RG~~rSr~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y~g~~~~~--~~~~l~~Ll~~l~~i~~~ 260 (469)
=|...|.||.-. ..++.....-++.+++|++...+.+.+.+. +.|.|.|.++ ....+..|+..|.+.-.+
T Consensus 10 FC~~~C~yC~f~~~~~~~~~~~~Y~~aL~~Ei~~~~~~~~~~~~------tiy~GGGTPs~L~~~~l~~ll~~i~~~f~~ 83 (377)
T PRK08599 10 FCEHICYYCDFNKVFIENQPVDEYLDALIKEMESTVAKYIRKLK------TIYIGGGTPTALSAEQLERLLNAIHRTLPL 83 (377)
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEE------EEEECCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 89986899969164689877999999999999976551499557------999799810009999999999999997697
Q ss_pred ---CCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCC-CCCEEEE
Q ss_conf ---001354421000100036652022111220133211145789987303334411467899987401344-3200000
Q gi|255764472|r 261 ---VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI-AISSDFI 336 (469)
Q Consensus 261 ---~riR~~s~~P~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~~~r~~~p~~-~i~tdiI 336 (469)
.-+-+ =++|..++.+-++.+++.+ ..-+-+++||-++.+|+.|+|.|+.++..++++.+|++ ++ .++.|+|
T Consensus 84 ~~~~EiTi-E~nP~~~~~~~l~~l~~~G--vNRiSlGvQsf~~~~l~~lgR~h~~~~~~~~i~~~r~~--gf~~iniDLI 158 (377)
T PRK08599 84 SDLEEFTF-EANPGDLTKEKLQVLKDYG--VNRISLGVQTFNDELLKKIGRTHNEEDVYESIANAKKA--GFKNISIDLI 158 (377)
T ss_pred CCCCEEEE-EECCCCCCHHHHHHHHHCC--CCEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHC--CCCCEEEEEE
T ss_conf 76732799-9551516399999999709--98799965359879999868999899999999999975--9974115654
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEECCCHHHHHC
Q ss_conf 135220124789886332210111002000011120123214
Q gi|255764472|r 337 VGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 (469)
Q Consensus 337 vGfPgETeedf~~Tl~~i~~~~~~~~~vf~yS~r~gT~Aa~m 378 (469)
.|+||+|.++|++|++.+-+++++++.+|++..+|||+-+++
T Consensus 159 yGlP~Qt~~~~~~~l~~~~~l~p~hiS~Y~L~ie~~t~~~~~ 200 (377)
T PRK08599 159 YALPGQTIEDVKESLDKALALDIPHYSLYSLILEPKTVFYNL 200 (377)
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEECCCCHHHHH
T ss_conf 278889899999999999730636345544233588768888
No 18
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=99.73 E-value=7.5e-17 Score=145.51 Aligned_cols=182 Identities=19% Similarity=0.332 Sum_probs=134.8
Q ss_pred CCCCCCCCCCHHHH--HHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCC--CCCCCCHHHHHHHCCCCC
Q ss_conf 32446811100122--13764100588999887631013310587314541134113444--310002167886204443
Q gi|255764472|r 185 GCDKFCTFCVVPYT--RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIKGL 260 (469)
Q Consensus 185 GC~~~CsfC~ip~~--RG~~rSr~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y~g~~~~~--~~~~l~~Ll~~l~~i~~~ 260 (469)
=|...|.||.-+.. +.....+-++.+++|++..... +.|. +.|.|.|.++ ....+..|+..+.+....
T Consensus 12 FC~~~C~yC~f~~~~~~~~~~~~Y~~~L~~Ei~~~~~~--~~i~------tiy~GGGTPs~l~~~~l~~l~~~i~~~~~~ 83 (374)
T PRK05799 12 FCKQKCLYCDFPSYSGKEDLMMEYIKALSKEIVNKTKN--KKIK------SIFIGGGTPSYLSLEALEILLKTIKKLNKK 83 (374)
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC--CCEE------EEEECCCCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 99985899979474887006999999999999976579--8154------999799650229999999999999856888
Q ss_pred CCCCCC-CCCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCC-CCCEEEECC
Q ss_conf 001354-421000100036652022111220133211145789987303334411467899987401344-320000013
Q gi|255764472|r 261 VRLRYT-TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI-AISSDFIVG 338 (469)
Q Consensus 261 ~riR~~-s~~P~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~~~r~~~p~~-~i~tdiIvG 338 (469)
.-.-++ =++|..++++-++.+++.+ +.-+-+++||-+|.+|+.|||.|+.++..++++.+|++ ++ .++.|+|.|
T Consensus 84 ~~~E~TiE~nP~~~~~~~l~~l~~~G--vNRiSiGVQSf~~~~l~~lgR~h~~~~~~~ai~~~~~~--gf~niniDLIyG 159 (374)
T PRK05799 84 ENLEFTVEGNPGTFTEEKLKILKSMG--VNRISIGLQAWQNSLLKTLGRIHTFEEFLENYKLARKL--GFNNINVDLMFG 159 (374)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHCC--CCEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHC--CCCCEEEEEECC
T ss_conf 78458998566778999999999719--97588853358899999847999899999999999975--997466885448
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCHHEEECCCHHHHHC
Q ss_conf 5220124789886332210111002000011120123214
Q gi|255764472|r 339 FPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 (469)
Q Consensus 339 fPgETeedf~~Tl~~i~~~~~~~~~vf~yS~r~gT~Aa~m 378 (469)
+||+|.++++++++.+-++.++++.+|++..+|||+-+++
T Consensus 160 lPgQt~~~~~~~l~~~~~l~p~hiS~Y~L~i~~~t~~~~~ 199 (374)
T PRK05799 160 LPNQTLEDWKETLEKVVELSPEHISCYSLIIEEGTPFYNL 199 (374)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHH
T ss_conf 9888789999999999841725013654205788679988
No 19
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=99.73 E-value=1e-16 Score=144.57 Aligned_cols=206 Identities=20% Similarity=0.306 Sum_probs=142.6
Q ss_pred EEEECCCCCCCCCCCCHHHHHH-HHHHHHHHHHHHHHHHHHHC-CCCEEEEECCCCCEEEECCCCC--CCCCCCHHHHHH
Q ss_conf 8741233244681110012213-76410058899988763101-3310587314541134113444--310002167886
Q gi|255764472|r 179 FLTIQEGCDKFCTFCVVPYTRG-IEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSL 254 (469)
Q Consensus 179 ~ikI~~GC~~~CsfC~ip~~RG-~~rSr~~~~Iv~ei~~l~~~-G~kEi~L~g~d~~~Y~g~~~~~--~~~~l~~Ll~~l 254 (469)
||-| -=|..+|.||.-+..-. .....-.+..++|++...+. +-+.+. +.|.|.|.+. ....+..|+..+
T Consensus 10 YIHI-PFC~~kC~YCdF~s~~~~~~~~~~~~~~~~el~~~~~~~~~~~i~------TIyfGGGTPSlL~~~~l~~ll~~i 82 (353)
T PRK05904 10 YIHI-PFCQYICTFCDFKRILKTPQTKKIFKDFLKNIKMHIKNFKIKQFK------TIYLGGGTPNCLNDQLLDILLSTI 82 (353)
T ss_pred EEEE-CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEE------EEEECCCCCHHCCHHHHHHHHHHH
T ss_conf 9980-899870899989841887685999999999999998764799544------899899860208999999999999
Q ss_pred HCC-CCCCCCCCC-CCCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCC-CC
Q ss_conf 204-443001354-421000100036652022111220133211145789987303334411467899987401344-32
Q gi|255764472|r 255 SEI-KGLVRLRYT-TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI-AI 331 (469)
Q Consensus 255 ~~i-~~~~riR~~-s~~P~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~~~r~~~p~~-~i 331 (469)
.+. ... .-++ =++|..++++-+..+++.+ ..-+-+++||.+|++|+.|+|.|+.++..++++.+|++ ++ .+
T Consensus 83 ~~~~~~~--~EiTiEaNP~~~~~ekL~~lk~~G--VNRiSlGVQSf~d~~Lk~LGR~H~~~~~~~ai~~~r~~--Gf~nI 156 (353)
T PRK05904 83 KPYVDNN--CEFTIECNPELITQSQINLLKKNK--VNRISLGVQSMNNNILKQLNRTHTIQDSKEAINLLHKN--GIYNI 156 (353)
T ss_pred HHHCCCC--CEEEEEECCCCCCHHHHHHHHHCC--CCEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHH--CCCEE
T ss_conf 9763878--359998651448789999999649--87688874559989999838999899999999999981--99736
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEECCCHHHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf 000001352201247898863322101110020000111201232143688989999999999999
Q gi|255764472|r 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKK 397 (469)
Q Consensus 332 ~tdiIvGfPgETeedf~~Tl~~i~~~~~~~~~vf~yS~r~gT~Aa~m~~qV~~~vk~~R~~~l~~~ 397 (469)
+.|+|.|+||+|.++++++++.+-+++++++.++...-+|||+-.+...+++++...+....+.+.
T Consensus 157 siDLIyGlPgQT~~~~~~~L~~~l~l~p~HiS~Y~LtiE~gT~~~~~~~~~~~d~~~~~~~~~~~~ 222 (353)
T PRK05904 157 SCDFLYCLPILKLKDLDEVFNFILKHKINHISFYSLEIKEGSILKKYHYTIDEDKEAEQLNYIKAK 222 (353)
T ss_pred EECEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 004263599999999999999999659991788888985797320478899927999999999999
No 20
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=99.72 E-value=1.3e-16 Score=143.68 Aligned_cols=196 Identities=21% Similarity=0.334 Sum_probs=140.6
Q ss_pred CCCCEEEEEECCCCCCCCCCCCHHHH----HHHHHHHHHHHHHHHHHHHHH----CCCCEEEEECCCCCEEEECCCCC--
Q ss_conf 77725787412332446811100122----137641005889998876310----13310587314541134113444--
Q gi|255764472|r 173 KRGVTAFLTIQEGCDKFCTFCVVPYT----RGIEISRSLSQVVDEARKLID----NGVCEITLLGQNVNAWRGKGLDG-- 242 (469)
Q Consensus 173 ~~~~~a~ikI~~GC~~~CsfC~ip~~----RG~~rSr~~~~Iv~ei~~l~~----~G~kEi~L~g~d~~~Y~g~~~~~-- 242 (469)
.+.++-||-| -=|+.+|.||.-|.. .......-++.+.+|++...+ .|. .| + +.|.|.|.++
T Consensus 170 ~~~~SLYIHI-PFC~~kC~YCdF~s~~i~~~~~~v~~Yl~aL~kEI~~~~~~l~~~~~-~i-----~-TIY~GGGTPS~L 241 (497)
T PRK08207 170 KNEVSIYIGI-PFCPTRCLYCSFPSYPINGRKGLVEPYLEALHYEIEEIGKYLKEKGL-KI-----E-TIYFGGGTPTSI 241 (497)
T ss_pred CCCEEEEEEE-CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC-EE-----C-EEEECCCCCCCC
T ss_conf 8847999981-89589878999803115776331999999999999999987623798-03-----5-699799810029
Q ss_pred CCCCCCHHHHHHHCC-CCCCCCCCCC--CC-CCCCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHH
Q ss_conf 310002167886204-4430013544--21-0001000366520221112201332111457899873033344114678
Q gi|255764472|r 243 EKCTFSDLLYSLSEI-KGLVRLRYTT--SH-PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI 318 (469)
Q Consensus 243 ~~~~l~~Ll~~l~~i-~~~~riR~~s--~~-P~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~ 318 (469)
....+..|+..|.+. .....++=-+ ++ |..++.+-++.+++.+ +.-+-+++||-++.+|+.+||.|+.+++.++
T Consensus 242 s~~ql~~ll~~i~~~F~~~~~~~EiTvEanRPdtit~ekL~~lk~~G--vnRiSiGvQSf~~~~Lk~lGR~Ht~~~~~~a 319 (497)
T PRK08207 242 TAEEFEKLLEEIYESFPDVKNVKEFTVEAGRPDTITEEKLEVLKKYN--VDRISINPQSMNDETLKAIGRHHTVEDIIEK 319 (497)
T ss_pred CHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHCC--CCEEEEECCCCCHHHHHHHCCCCCHHHHHHH
T ss_conf 99999999999998657689997799978798962999999999759--8758883532998999981899999999999
Q ss_pred HHHHHHHCCCC-CCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEECCCHHHHHCCC
Q ss_conf 99987401344-320000013522012478988633221011100200001112012321436
Q gi|255764472|r 319 IDRIRSVRPDI-AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 (469)
Q Consensus 319 i~~~r~~~p~~-~i~tdiIvGfPgETeedf~~Tl~~i~~~~~~~~~vf~yS~r~gT~Aa~m~~ 380 (469)
++.+|++ |+ .|+.|+|.|.||||.++|++||+-+.++.|+++.++.-+-.+||+-.....
T Consensus 320 ~~~ar~~--GF~nIN~DLI~GLPgqt~~~~~~tL~~i~~L~Pd~iTvhsLaikr~s~l~~~~~ 380 (497)
T PRK08207 320 FHLAREL--GFDNINMDLIIGLPGEGLEEFKHTLEEIEKLMPDSLTVHTLSIKRASRLTENKE 380 (497)
T ss_pred HHHHHHC--CCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEECCCCHHHHCCC
T ss_conf 9999985--998497743537999999999999999981399825876665546860222455
No 21
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=99.70 E-value=2.8e-16 Score=141.24 Aligned_cols=184 Identities=20% Similarity=0.255 Sum_probs=132.0
Q ss_pred CCCCCCCCCCHHH-H--HHHHHHHHHHHHHHHHHHHHHC-CCCEEEEECCCCCEEEECCCCC--CCCCCCHHHHHHHCCC
Q ss_conf 3244681110012-2--1376410058899988763101-3310587314541134113444--3100021678862044
Q gi|255764472|r 185 GCDKFCTFCVVPY-T--RGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIK 258 (469)
Q Consensus 185 GC~~~CsfC~ip~-~--RG~~rSr~~~~Iv~ei~~l~~~-G~kEi~L~g~d~~~Y~g~~~~~--~~~~l~~Ll~~l~~i~ 258 (469)
=|...|.||.-.. . ++.-..+-++.+++|++...+. +-+.+. +.|.|.+.++ ....+..|+..|.+.-
T Consensus 13 FC~~~C~YCdf~~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~~~i~------tiy~GGGTPs~L~~~~l~~ll~~l~~~f 86 (381)
T PRK09057 13 FCLAKCPYCDFNSHVRHAPIDQARFAAAFLRELATEAARTGPRTLT------SIFFGGGTPSLMQPETVAALLDAIARLW 86 (381)
T ss_pred CCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEE------EEEECCCHHHCCCHHHHHHHHHHHHHHC
T ss_conf 8888289994987017887879999999999999999875999357------9997996123099999999999999867
Q ss_pred CCCC-CCCC-CCCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 4300-1354-4210001000366520221112201332111457899873033344114678999874013443200000
Q gi|255764472|r 259 GLVR-LRYT-TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFI 336 (469)
Q Consensus 259 ~~~r-iR~~-s~~P~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~~~r~~~p~~~i~tdiI 336 (469)
++.- .-++ =++|..++++.++.+++.+ +.-+-|++||-++.+|+.|||.|+.++..++++.+|+.++ .++.|+|
T Consensus 87 ~~~~~~EiTiE~nP~~~~~~~l~~l~~~G--vnRiSlGVQsf~~~~l~~lgR~h~~~~~~~ai~~~r~~f~--~in~DLi 162 (381)
T PRK09057 87 PVADDIEITLEANPTSVEAGRFRGYRAAG--VNRVSLGVQALNDADLRFLGRLHSVAEALAAIDLAREIFP--RVSFDLI 162 (381)
T ss_pred CCCCCCEEEEECCHHHCCHHHHHHHHHHC--CCEEEEECCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCC--CCCHHHH
T ss_conf 98657236772374220167999999709--8769896234999999973899989999999999998654--5120664
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEECCCHHHHHC
Q ss_conf 135220124789886332210111002000011120123214
Q gi|255764472|r 337 VGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 (469)
Q Consensus 337 vGfPgETeedf~~Tl~~i~~~~~~~~~vf~yS~r~gT~Aa~m 378 (469)
.|+||+|.+++++|++.+-++.++++.+|.+..+|||+-++.
T Consensus 163 yGlPgQt~~~~~~~l~~~~~l~p~hiS~Y~L~~e~~t~~~~~ 204 (381)
T PRK09057 163 YARPGQTLAAWRAELKEALGLAADHLSLYQLTIEEGTAFYGL 204 (381)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHH
T ss_conf 279889888999999999712777432235664489727878
No 22
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=99.70 E-value=4.9e-16 Score=139.41 Aligned_cols=212 Identities=20% Similarity=0.267 Sum_probs=143.1
Q ss_pred CCEEEEEECCCCCCCCCCCCHHH------HHH---HHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCC--C
Q ss_conf 72578741233244681110012------213---764100588999887631013310587314541134113444--3
Q gi|255764472|r 175 GVTAFLTIQEGCDKFCTFCVVPY------TRG---IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG--E 243 (469)
Q Consensus 175 ~~~a~ikI~~GC~~~CsfC~ip~------~RG---~~rSr~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y~g~~~~~--~ 243 (469)
|.+.||-| -=|..+|.||.-+. .++ ....+-++.+.+|++.....| +.+ + +.|.|.|.++ .
T Consensus 10 PlslYiHI-PFC~~~C~YCdF~~~v~~~~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~-~~i-----~-tiy~GGGTPSlL~ 81 (399)
T PRK07379 10 PTSAYLHI-PFCRRRCFYCDFPISVVGDRQRGGTSGLIEEYVEVLCQEIAITPSLG-QPL-----Q-TVFFGGGTPSLLP 81 (399)
T ss_pred CCEEEEEC-CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC-CCE-----E-EEEECCCHHHHCC
T ss_conf 12488865-00669288999975176666665405799999999999997314159-962-----1-8996995567489
Q ss_pred CCCCCHHHHHHHCCCCCCC-CCCC-CCCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 1000216788620444300-1354-4210001000366520221112201332111457899873033344114678999
Q gi|255764472|r 244 KCTFSDLLYSLSEIKGLVR-LRYT-TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 (469)
Q Consensus 244 ~~~l~~Ll~~l~~i~~~~r-iR~~-s~~P~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~~ 321 (469)
...+..|+..|.+.-++.- .-++ =++|..++.+-+..+++.+ ..-+-+++||-++++|+.++|.|+.++..++++.
T Consensus 82 ~~~l~~ll~~l~~~f~~~~~~EiTiE~nP~~~~~~~l~~l~~~G--vNRiSiGvQSf~~~~L~~lgR~h~~~~~~~ai~~ 159 (399)
T PRK07379 82 VEQLERILLTLDQRFGIAPDAEISLEIDPGTFDLEQLQGYRSLG--VNRVSLGVQAFQDELLALCGRSHRVKDIYQAVAD 159 (399)
T ss_pred HHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHCC--CCEEEEEECCCCHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 99999999999986899988579998458989999999998569--8858897023868899984899999999999999
Q ss_pred HHHHCCCC-CCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEECCCHHHHHCC--C--CCC-HHHHHHHHHHHH
Q ss_conf 87401344-32000001352201247898863322101110020000111201232143--6--889-899999999999
Q gi|255764472|r 322 IRSVRPDI-AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML--E--QVD-ENVKAERLLCLQ 395 (469)
Q Consensus 322 ~r~~~p~~-~i~tdiIvGfPgETeedf~~Tl~~i~~~~~~~~~vf~yS~r~gT~Aa~m~--~--qV~-~~vk~~R~~~l~ 395 (469)
+|++ ++ .++.|+|.|+||+|.++|++|++.+-++.++++.++.+.-+|||+-++.. + .+| ++.+.+......
T Consensus 160 ~~~~--gf~niniDLIyGlPgQt~~~~~~~l~~~~~l~p~hiS~Y~L~~e~~T~~~~~~~~~~~~lp~~~~~~~~~~~~~ 237 (399)
T PRK07379 160 IHQA--GIENFSLDLISGLPHQTLEDWQASLEAAIAINPTHLSCYDLVLEPVTAFGKQYQPGKAPLPSDETTAAMYRLAQ 237 (399)
T ss_pred HHHC--CCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEECCCCHHHHHHCCCCCCCCCHHHHHHHHHHHH
T ss_conf 9976--99755455330789988999999999997338880788888963897799986058889999899999999999
Q ss_pred HHH
Q ss_conf 999
Q gi|255764472|r 396 KKL 398 (469)
Q Consensus 396 ~~~ 398 (469)
+..
T Consensus 238 ~~L 240 (399)
T PRK07379 238 EIL 240 (399)
T ss_pred HHH
T ss_conf 999
No 23
>PRK08807 consensus
Probab=99.70 E-value=1.7e-16 Score=142.82 Aligned_cols=200 Identities=13% Similarity=0.153 Sum_probs=139.0
Q ss_pred EEEEEECCCCCCCCCCCCHHH--HHHHH-HHHHHHHHHHHHHHHHHC-CCCEEEEECCCCCEEEECCCCC--CCCCCCHH
Q ss_conf 578741233244681110012--21376-410058899988763101-3310587314541134113444--31000216
Q gi|255764472|r 177 TAFLTIQEGCDKFCTFCVVPY--TRGIE-ISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDG--EKCTFSDL 250 (469)
Q Consensus 177 ~a~ikI~~GC~~~CsfC~ip~--~RG~~-rSr~~~~Iv~ei~~l~~~-G~kEi~L~g~d~~~Y~g~~~~~--~~~~l~~L 250 (469)
.-||-| -=|..+|.||.-.. .++.. .++-++.+++|++..... +-+.+ + +.|.|.|.++ ....+..|
T Consensus 10 ~lYiHI-PFC~~~C~YCdf~s~~~~~~~~~~~y~~~l~~ei~~~~~~~~~~~~-----~-tiy~GGGTPs~L~~~~l~~l 82 (385)
T PRK08807 10 SLYVHL-PWCVRKCPYCDFNSHAAKGALPFDAYVDALIRDLDADLPLVWGRVV-----H-SVFFGGGTPSLFPPEAIDRF 82 (385)
T ss_pred EEEEEC-CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEE-----E-EEEECCCHHHHCCHHHHHHH
T ss_conf 999970-8888858999894410789876999999999999974455069844-----3-89979955573799999999
Q ss_pred HHHHHCCCCCC-CCCCC-CCCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 78862044430-01354-42100010003665202211122013321114578998730333441146789998740134
Q gi|255764472|r 251 LYSLSEIKGLV-RLRYT-TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 (469)
Q Consensus 251 l~~l~~i~~~~-riR~~-s~~P~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~~~r~~~p~ 328 (469)
+..+...-... -.-++ =++|..++.+-+..+++.+ ..-+-|++||.++.+|+.|||.|+.++..++++.+|++ +
T Consensus 83 l~~i~~~~~~~~~~E~TiE~nP~~~~~~~l~~l~~~G--vnRlSlGvQsf~~~~L~~lgR~h~~~~~~~ai~~~r~~--g 158 (385)
T PRK08807 83 LQAAAARLRFAPNLEITLETNPGTAEHGRFDHYRAAG--VNRLSFGVQSFDDVALQRLGRIHDSAEAERAIKLAQDA--G 158 (385)
T ss_pred HHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHCC--CCEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHC--C
T ss_conf 9999996697767169995272101088999998569--87588741558999999848999899999999999974--9
Q ss_pred C-CCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEECCCHHHHHCCCC-CCHHHH
Q ss_conf 4-3200000135220124789886332210111002000011120123214368-898999
Q gi|255764472|r 329 I-AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ-VDENVK 387 (469)
Q Consensus 329 ~-~i~tdiIvGfPgETeedf~~Tl~~i~~~~~~~~~vf~yS~r~gT~Aa~m~~q-V~~~vk 387 (469)
+ .++.|+|.|.||+|.+++++|++.+-+++++++.++++..+|||+-+....+ +|++..
T Consensus 159 f~nin~DLiyglP~Qt~~~~~~~l~~~~~l~p~hiS~Y~L~ie~~t~~~~~~~~~lp~~d~ 219 (385)
T PRK08807 159 YDNFNIDLMYALPEQTLLQAEHDLERAFALQPTHLSHYQLTLEPNTVFFARPPQGIPDDDA 219 (385)
T ss_pred CCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEECCCCHHHHCCCCCCCCHHH
T ss_conf 9731301032699998999999999985559984789888851783575454225996789
No 24
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=99.70 E-value=4.2e-16 Score=139.95 Aligned_cols=194 Identities=17% Similarity=0.252 Sum_probs=137.0
Q ss_pred CCCEEEEEECCCCCCCCCCCCHHHH--HHHHHHHHHHHHHHHHHHHHHC-CCCEEEEECCCCCEEEECCCCC--CCCCCC
Q ss_conf 7725787412332446811100122--1376410058899988763101-3310587314541134113444--310002
Q gi|255764472|r 174 RGVTAFLTIQEGCDKFCTFCVVPYT--RGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDG--EKCTFS 248 (469)
Q Consensus 174 ~~~~a~ikI~~GC~~~CsfC~ip~~--RG~~rSr~~~~Iv~ei~~l~~~-G~kEi~L~g~d~~~Y~g~~~~~--~~~~l~ 248 (469)
++..-||-| -=|...|.||.-... .......-++.+.+|++..... .-+.| + +.|.|.|.++ ....+.
T Consensus 10 ~~lsLYiHI-PFC~~~C~yC~f~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~i-----~-tiy~GGGTPs~L~~~~l~ 82 (390)
T PRK06582 10 NDLSIYIHW-PFCLSKCPYCDFNSHVASTIDHNQWLKSYEKEIEYFKDIIQNKYI-----K-SIFFGGGTPSLMNPVIVE 82 (390)
T ss_pred CCEEEEEEE-CCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHCCCCEE-----E-EEEECCCHHHHCCHHHHH
T ss_conf 774999983-899880899939071488588999999999999998876479805-----7-999898513528999999
Q ss_pred HHHHHHHCCCCCCC-CCCC-CCCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHC
Q ss_conf 16788620444300-1354-421000100036652022111220133211145789987303334411467899987401
Q gi|255764472|r 249 DLLYSLSEIKGLVR-LRYT-TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 (469)
Q Consensus 249 ~Ll~~l~~i~~~~r-iR~~-s~~P~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~~~r~~~ 326 (469)
.|+..+.....+.. .-++ -++|..++++-+..+++.+ ..-+-+++||-+|.+|+.|||.|+.++..++++.+|+.+
T Consensus 83 ~l~~~l~~~~~~~~~~EiTiE~nP~~~~~~~l~~l~~~G--vNRiSiGVQsf~~~~L~~lgR~h~~~~~~~~i~~~~~~f 160 (390)
T PRK06582 83 GIINKISNLAIIDNQTEITLETNPTSFETEKFKAFKSAG--INRVSIGVQSLKEDDLKKLGRTHDCMQAIKTIEAANTIF 160 (390)
T ss_pred HHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHCC--CCEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHC
T ss_conf 999999985788887348998443206198999998559--867999713389899997189988999999999998746
Q ss_pred CCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEECCCHHHHHC
Q ss_conf 3443200000135220124789886332210111002000011120123214
Q gi|255764472|r 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 (469)
Q Consensus 327 p~~~i~tdiIvGfPgETeedf~~Tl~~i~~~~~~~~~vf~yS~r~gT~Aa~m 378 (469)
+ .++.|+|.|+||+|.++|++|++.+-+++++++.+|.+.-+||||-+++
T Consensus 161 ~--niniDLI~GlP~QT~~~~~~~L~~~~~l~p~hiS~Y~L~ie~~t~~~~~ 210 (390)
T PRK06582 161 P--RVSFDLIYARSGQTLKDWQEELKQAMQLATSHISLYQLTIEKGTPFYKL 210 (390)
T ss_pred C--CEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHH
T ss_conf 3--3544541479999899999999999833898517898885379778888
No 25
>PRK05660 coproporphyrinogen III oxidase; Provisional
Probab=99.69 E-value=5.7e-16 Score=138.95 Aligned_cols=199 Identities=13% Similarity=0.161 Sum_probs=141.9
Q ss_pred EEEEECCCCCCCCCCCCHHH--HHHHH-HHHHHHHHHHHHHHHHHC-CCCEEEEECCCCCEEEECCCCC--CCCCCCHHH
Q ss_conf 78741233244681110012--21376-410058899988763101-3310587314541134113444--310002167
Q gi|255764472|r 178 AFLTIQEGCDKFCTFCVVPY--TRGIE-ISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDG--EKCTFSDLL 251 (469)
Q Consensus 178 a~ikI~~GC~~~CsfC~ip~--~RG~~-rSr~~~~Iv~ei~~l~~~-G~kEi~L~g~d~~~Y~g~~~~~--~~~~l~~Ll 251 (469)
-||-| -=|...|+||.-.. .++.. ..+-++.+++|++..... +-+.|. +.|.|.|.++ ....+..|+
T Consensus 9 LYiHi-PFC~~~C~YC~f~~~~~~~~~~~~~Y~~aL~~ei~~~~~~~~~~~i~------tiy~GGGTPs~L~~~~l~~l~ 81 (378)
T PRK05660 9 LYIHI-PWCVQKCPYCDFNSHALKGEVPEDEYVDHLLADLDADLPLVQGREVH------SIFIGGGTPSLFSAEAIQRLL 81 (378)
T ss_pred EEEEC-CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEE------EEEECCCHHHHCCHHHHHHHH
T ss_conf 99972-78987699996965048887769999999999999987761797576------999789533308999999999
Q ss_pred HHHHCCCCCC-CCCCC-CCCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 8862044430-01354-421000100036652022111220133211145789987303334411467899987401344
Q gi|255764472|r 252 YSLSEIKGLV-RLRYT-TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329 (469)
Q Consensus 252 ~~l~~i~~~~-riR~~-s~~P~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~~~r~~~p~~ 329 (469)
+.|.+.-++. -.-++ =++|..++++-+..+++.+ ..-+-+++||-++.+|+.|||.|+.+++.++++.+|+. ++
T Consensus 82 ~~i~~~f~~~~~~EiTiE~nP~~~~~~~l~~l~~~G--vnRiSiGVQsf~~~~l~~lgR~h~~~~~~~ai~~~r~~--gf 157 (378)
T PRK05660 82 DGVRARLPFAPDAEITMEANPGTVEADRFVGYQRAG--VNRISIGVQSFSEEKLKRLGRIHGPDEAKRAAKLAQGA--GL 157 (378)
T ss_pred HHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHCC--CCEEEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHC--CC
T ss_conf 999985798777148984570533088999999809--87599961437899999827999999999999999976--99
Q ss_pred -CCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEECCCHHHHHCCCCCCHHHH
Q ss_conf -3200000135220124789886332210111002000011120123214368898999
Q gi|255764472|r 330 -AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 (469)
Q Consensus 330 -~i~tdiIvGfPgETeedf~~Tl~~i~~~~~~~~~vf~yS~r~gT~Aa~m~~qV~~~vk 387 (469)
.++.|+|.|+||+|.++|+++++-+-+++++++.+|.+..+|||+-++.+.++|++..
T Consensus 158 ~~iniDLiyGlP~Qt~~~~~~~l~~~~~l~p~his~Y~L~~e~~T~~~~~~~~lp~~~~ 216 (378)
T PRK05660 158 RSFNLDLMHGLPDQSLEEALDDLRQAIALNPPHLSWYQLTIEPNTVFGSRPPVLPDDDA 216 (378)
T ss_pred CEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEECCCCHHHHCCCCCCCHHH
T ss_conf 60654232689998899999999998644988057888886589737646766998589
No 26
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=99.69 E-value=1.5e-16 Score=143.28 Aligned_cols=184 Identities=13% Similarity=0.185 Sum_probs=134.0
Q ss_pred CCCCCCCCCCHHHH--HHHHHHHHHHHHHHHHHHHHHC--CCCEEEEECCCCCEEEECCCCC--CCCCCCHHHHHHHC-C
Q ss_conf 32446811100122--1376410058899988763101--3310587314541134113444--31000216788620-4
Q gi|255764472|r 185 GCDKFCTFCVVPYT--RGIEISRSLSQVVDEARKLIDN--GVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSE-I 257 (469)
Q Consensus 185 GC~~~CsfC~ip~~--RG~~rSr~~~~Iv~ei~~l~~~--G~kEi~L~g~d~~~Y~g~~~~~--~~~~l~~Ll~~l~~-i 257 (469)
=|...|.||.-... +......-++.+++|++...+. +-+.+. +.|.|.|.++ ....+..|+..|.+ +
T Consensus 9 FC~~~C~YCdF~~~~~~~~~~~~Y~~aL~~Ei~~~~~~~~~~~~i~------tiy~GGGTPS~l~~~~l~~ll~~l~~~~ 82 (351)
T PRK08446 9 FCESKCGYCAFNSYEDKFDLKEEYFQALCLDLKFQLKQFIQDEKIE------SVFIGGGTPSTVSAKLYEPIFEIIYPYL 82 (351)
T ss_pred CCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEE------EEEECCCHHHHCCHHHHHHHHHHHHHHC
T ss_conf 8388089997928517956799999999999999987626899366------9996897456379999999999999766
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCC-CCCEEEE
Q ss_conf 443001354421000100036652022111220133211145789987303334411467899987401344-3200000
Q gi|255764472|r 258 KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI-AISSDFI 336 (469)
Q Consensus 258 ~~~~riR~~s~~P~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~~~r~~~p~~-~i~tdiI 336 (469)
....-+-+ =++|..++++.++.+++.+ ..-+-+++||-+|++|+.|+|.|+.++..++++.+|++ ++ .++.|+|
T Consensus 83 ~~~~EiTi-E~nP~~~~~~~l~~l~~~G--vNRiSiGVQSf~d~~Lk~lgR~H~~~~~~~ai~~~r~~--gf~niniDLI 157 (351)
T PRK08446 83 SKDCEITT-EANPNSATLAWLKGMKNLG--VNRISFGVQSFHEDKLKFLGRIHSKNQIIKAIENAKKA--GFKNISIDLI 157 (351)
T ss_pred CCCCEEEE-EECCCCCCHHHHHHHHHCC--CCEEEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHC--CCCEECHHHH
T ss_conf 98835999-7676868999999998649--87699973137689999818998899999999999984--9963422553
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEECCCHHHHHCC
Q ss_conf 1352201247898863322101110020000111201232143
Q gi|255764472|r 337 VGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 (469)
Q Consensus 337 vGfPgETeedf~~Tl~~i~~~~~~~~~vf~yS~r~gT~Aa~m~ 379 (469)
.|+||+|.++++++++.+-+++++++.++.+...||||-++..
T Consensus 158 yGlP~Qt~e~~~~~l~~~~~l~p~HiS~Y~L~ie~~T~~~~~~ 200 (351)
T PRK08446 158 YNTKLDNKKLLKEELKLAKELPITHLSAYALTIEENTPFEEKN 200 (351)
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCCEEECCCCEECCCCHHHHCC
T ss_conf 1799999999999999997489697974230446998233256
No 27
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=99.69 E-value=4.3e-16 Score=139.84 Aligned_cols=213 Identities=21% Similarity=0.292 Sum_probs=144.0
Q ss_pred EEEEECCCCCCCCCCCCH----HH--HHHHHHHHHHHHHHHHHHHHHHC-CCCEEEEECCCCCEEEECCCCC--CCCCCC
Q ss_conf 787412332446811100----12--21376410058899988763101-3310587314541134113444--310002
Q gi|255764472|r 178 AFLTIQEGCDKFCTFCVV----PY--TRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDG--EKCTFS 248 (469)
Q Consensus 178 a~ikI~~GC~~~CsfC~i----p~--~RG~~rSr~~~~Iv~ei~~l~~~-G~kEi~L~g~d~~~Y~g~~~~~--~~~~l~ 248 (469)
-||-| -=|...|.||.- +. .+.....+-++.+.+|++...+. +.+.-.+ + +.|.|.|.++ ....+.
T Consensus 5 LYiHi-PFC~~~C~yC~f~~~~~~~~~~~~~~~~Y~~~L~~Ei~~~~~~l~~~~~~i---~-tiy~GGGTPs~L~~~~l~ 79 (376)
T PRK05628 5 VYVHV-PFCATRCGYCDFNTYTAAELGGGASPDGYLDALRAELELAAAVLGDPAPPV---S-TVFVGGGTPSLLGAEGLA 79 (376)
T ss_pred EEEEC-CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEE---E-EEEECCCHHHHCCHHHHH
T ss_conf 99870-576460899979573365247876799999999999999987617789657---8-999789446648999999
Q ss_pred HHHHHHHCCCCCCC-CCCC-CCCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHC
Q ss_conf 16788620444300-1354-421000100036652022111220133211145789987303334411467899987401
Q gi|255764472|r 249 DLLYSLSEIKGLVR-LRYT-TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 (469)
Q Consensus 249 ~Ll~~l~~i~~~~r-iR~~-s~~P~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~~~r~~~ 326 (469)
+|+..|.+.-.+.- .-++ =++|..++++.++.+++.+ ..-+-+++||-++++|+.|||.|+.++..++++.+|+.
T Consensus 80 ~l~~~i~~~f~~~~~~EiTiE~nP~~~~~~~l~~l~~~G--vnRiSlGvQsf~~~~l~~lgR~h~~~~~~~~~~~~~~~- 156 (376)
T PRK05628 80 RVLDAVRDTFGLAPDAEVTTEANPESTSPEFFAALRAAG--YTRVSLGMQSAAPHVLAVLDRTHTPGRAVAAAREARAA- 156 (376)
T ss_pred HHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHCC--CCEEEEECCCCCHHHHHHCCCCCCHHHHHHHHHHHHHC-
T ss_conf 999999975899988569998342658999999999749--87599951558999999749999989999999999875-
Q ss_pred CCC-CCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEECCCHHHHHC-C-CC---CCHHHHHHHHHHHHHHHH
Q ss_conf 344-3200000135220124789886332210111002000011120123214-3-68---898999999999999999
Q gi|255764472|r 327 PDI-AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM-L-EQ---VDENVKAERLLCLQKKLR 399 (469)
Q Consensus 327 p~~-~i~tdiIvGfPgETeedf~~Tl~~i~~~~~~~~~vf~yS~r~gT~Aa~m-~-~q---V~~~vk~~R~~~l~~~~~ 399 (469)
++ .++.|+|.|.||+|.++|++|++.+-++.++++.+|.+..+|||+-++. . ++ .+++...++.....+...
T Consensus 157 -gf~~in~DLIyGlP~Qt~~~~~~~l~~~~~l~p~his~Y~l~~e~~t~~~~~~~~~~l~~p~e~~~~~~~~~~~~~L~ 234 (376)
T PRK05628 157 -GFEHVNLDLIYGTPGETDDDLRRSLDAALEAGVDHVSAYALIVEDGTALARRVRRGELPAPDDDVLADRYELADARLS 234 (376)
T ss_pred -CCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEECCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf -997255554427999999999999999973289815665556547867777775178999999999999999999998
No 28
>pfam04055 Radical_SAM Radical SAM superfamily. Radical SAM proteins catalyse diverse reactions, including unusual methylations, isomerisation, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation.
Probab=99.68 E-value=2.4e-16 Score=141.71 Aligned_cols=161 Identities=29% Similarity=0.502 Sum_probs=121.6
Q ss_pred EEECCCCCCCCCCCCHHHH--HHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCCCHHHHHHHCC
Q ss_conf 7412332446811100122--13764100588999887631013310587314541134113444310002167886204
Q gi|255764472|r 180 LTIQEGCDKFCTFCVVPYT--RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257 (469)
Q Consensus 180 ikI~~GC~~~CsfC~ip~~--RG~~rSr~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y~g~~~~~~~~~l~~Ll~~l~~i 257 (469)
+.+++||+++|+||..+.. +...+.+++++|+++++...+.|.+.+.++|.+...+ ......+..+.+.
T Consensus 1 ~~~~~gC~~~C~fC~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~gg~p~~~---------~~~~~~~~~~~~~ 71 (165)
T pfam04055 1 IIITPGCNLRCTYCAFPSIRARGKGRELSPEEILEEAKELARLGVEVVILTGGEPLLL---------PDLVELLERLLKL 71 (165)
T ss_pred CEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCC---------HHHHHHHHHHHHH
T ss_conf 9889374877968999785788865226999999999888745985999931676665---------2777778887653
Q ss_pred C--CCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEE
Q ss_conf 4--43001354421000100036652022111220133211145789987303334411467899987401344320000
Q gi|255764472|r 258 K--GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDF 335 (469)
Q Consensus 258 ~--~~~riR~~s~~P~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~~~r~~~p~~~i~tdi 335 (469)
. ...++.+. .++..+++++++.+++.+ +.++.+++|++++.+++.|+++++.+++.+.++.++++ ++...+.+
T Consensus 72 ~~~~~~~~~~~-t~~~~~~~~~~~~l~~~g--~~~i~~~ie~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--gi~~~~~~ 146 (165)
T pfam04055 72 EELEGIRITLE-TNGTLLDEELLEELKEAG--LDRVSISLQSGDDEVLKIINRGHTFEEVLEALELLREA--GIPVVVDN 146 (165)
T ss_pred CCCCCEEEEEE-EECCCCCHHHHHHHHHCC--CCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHC--CCCEEEEE
T ss_conf 14676489999-851433104568999719--85222463559999999857999989999999999987--99788999
Q ss_pred ECCCCCCHHHHHHHHHHHH
Q ss_conf 0135220124789886332
Q gi|255764472|r 336 IVGFPGETDDDFRATMDLV 354 (469)
Q Consensus 336 IvGfPgETeedf~~Tl~~i 354 (469)
|+|+||||++++.+|++++
T Consensus 147 i~~~~~e~~~~~~~~~~~i 165 (165)
T pfam04055 147 IVGLPGENDEDLEETLELL 165 (165)
T ss_pred EEECCCCCHHHHHHHHHHC
T ss_conf 9979999999999996039
No 29
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=99.68 E-value=9.6e-16 Score=137.24 Aligned_cols=202 Identities=15% Similarity=0.196 Sum_probs=142.1
Q ss_pred CCEEEEEECCCCCCCCCCCCHHH--HHHH--HHHHHHHHHHHHHHHHHHC-CCCEEEEECCCCCEEEECCCCC--CCCCC
Q ss_conf 72578741233244681110012--2137--6410058899988763101-3310587314541134113444--31000
Q gi|255764472|r 175 GVTAFLTIQEGCDKFCTFCVVPY--TRGI--EISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDG--EKCTF 247 (469)
Q Consensus 175 ~~~a~ikI~~GC~~~CsfC~ip~--~RG~--~rSr~~~~Iv~ei~~l~~~-G~kEi~L~g~d~~~Y~g~~~~~--~~~~l 247 (469)
|..-||-| -=|...|.||.-.. .++. ...+-++.+++|++..... +-+.+. +.|.|.|.++ ....+
T Consensus 19 PlslYiHI-PFC~~~C~YC~f~s~~~~~~~~~~~~Y~~aL~~Ei~~~~~~~~~~~~~------tiy~GGGTPs~L~~~~l 91 (393)
T PRK08898 19 PLSLYVHF-PWCVRKCPYCDFNSHEWKGGGIPEAAYLDALRADLEQALPLVWGRQVH------TVFIGGGTPSLLSAAGL 91 (393)
T ss_pred CCEEEEEC-CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEE------EEEECCCHHHHCCHHHH
T ss_conf 72899871-787160999988142278788679999999999999757770698677------99976842463899999
Q ss_pred CHHHHHHHCCCCCCC-CCCC-CCCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 216788620444300-1354-42100010003665202211122013321114578998730333441146789998740
Q gi|255764472|r 248 SDLLYSLSEIKGLVR-LRYT-TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 (469)
Q Consensus 248 ~~Ll~~l~~i~~~~r-iR~~-s~~P~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~~~r~~ 325 (469)
..|+..+.+.-.+.- .-++ =++|..++++-+..+++.+ ..-+-+++||-++.+|+.+||.|+.++..++++..|+.
T Consensus 92 ~~l~~~l~~~f~~~~~~E~tiE~nP~~~~~~~l~~l~~~G--vnRiSlGVQsf~~~~l~~lgR~h~~~~~~~~i~~~~~~ 169 (393)
T PRK08898 92 DRLLSDVRALLPLDPDAEITLEANPGTFEAEKFAQFRASG--VNRLSIGIQSFNDAHLKALGRIHDGAEARAAIEIAAKH 169 (393)
T ss_pred HHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHCC--CCEEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 9999999985897657316887362506099999998549--86489952028999999818999999999999999973
Q ss_pred CCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEECCCHHHHHCCCCCCHHHH
Q ss_conf 13443200000135220124789886332210111002000011120123214368898999
Q gi|255764472|r 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 (469)
Q Consensus 326 ~p~~~i~tdiIvGfPgETeedf~~Tl~~i~~~~~~~~~vf~yS~r~gT~Aa~m~~qV~~~vk 387 (469)
+. .++.|+|.|+||+|.++|++|++-+-++.++++.+|.+..+|+|+-++.+..+|++..
T Consensus 170 f~--~iniDLiyGlP~Qt~~~~~~~l~~~~~l~p~hiS~Y~L~iep~T~~~~~~~~lP~~d~ 229 (393)
T PRK08898 170 FD--NFNLDLMYALPNQTLDECRADVETALAFGPPHLSLYHLTLEPNTLFAKFPPALPDDDA 229 (393)
T ss_pred CC--CCCCHHHHCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEECCCCHHHHCCCCCCCHHH
T ss_conf 74--6672898359889899999999998624999589877776489733215767959899
No 30
>PRK08949 consensus
Probab=99.67 E-value=1.6e-15 Score=135.53 Aligned_cols=201 Identities=12% Similarity=0.163 Sum_probs=141.0
Q ss_pred EEEEEECCCCCCCCCCCCHHH--HHHHH-HHHHHHHHHHHHHHHHHC-CCCEEEEECCCCCEEEECCCCC--CCCCCCHH
Q ss_conf 578741233244681110012--21376-410058899988763101-3310587314541134113444--31000216
Q gi|255764472|r 177 TAFLTIQEGCDKFCTFCVVPY--TRGIE-ISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDG--EKCTFSDL 250 (469)
Q Consensus 177 ~a~ikI~~GC~~~CsfC~ip~--~RG~~-rSr~~~~Iv~ei~~l~~~-G~kEi~L~g~d~~~Y~g~~~~~--~~~~l~~L 250 (469)
.-||-| -=|...|.||.-.. .+++. ...-++.+++|++..... +-+++. +.|.|.|.++ ....+..|
T Consensus 8 slYiHI-PFC~~~C~YCdf~s~~~~~~~~~~~Y~~aL~~El~~~~~~~~~~~~~------tiy~GGGTPs~L~~~~l~~l 80 (378)
T PRK08949 8 SLYIHI-PWCVQKCPYCDFNSHALKGEVPHQDYVQHLLADLDADVAYAQGRELH------TIFIGGGTPSLLSAEAMQTL 80 (378)
T ss_pred EEEEEE-CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEE------EEEEECCHHHHCCHHHHHHH
T ss_conf 899980-88767189999986328888759999999999999865650797687------99972823200799999999
Q ss_pred HHHHHCCCCCC-CCCCC-CCCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 78862044430-01354-42100010003665202211122013321114578998730333441146789998740134
Q gi|255764472|r 251 LYSLSEIKGLV-RLRYT-TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 (469)
Q Consensus 251 l~~l~~i~~~~-riR~~-s~~P~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~~~r~~~p~ 328 (469)
+..+.+.-.+. -.-++ -++|..++.+.+..+++.+ ..-+-+++||-++++|+.++|.|+.++..++++.+|+. +
T Consensus 81 l~~i~~~f~~~~~~EiTiE~nP~~~~~~~l~~l~~~G--vNRiSlGvQsf~~~~L~~lgR~h~~~~~~~a~~~~~~~--g 156 (378)
T PRK08949 81 LDGVRARLPFAADAEITMEANPGTVEADRFVGYQRAG--VNRISIGVQSFSEEKLKRLGRIHGPQEAKRAAKLASGL--G 156 (378)
T ss_pred HHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHC--CCEEEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHC--C
T ss_conf 9999986798767058995582523188999999719--86699950348989999837999999999999999865--9
Q ss_pred C-CCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEECCCHHHHHCCCCCCHHHHH
Q ss_conf 4-32000001352201247898863322101110020000111201232143688989999
Q gi|255764472|r 329 I-AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 (469)
Q Consensus 329 ~-~i~tdiIvGfPgETeedf~~Tl~~i~~~~~~~~~vf~yS~r~gT~Aa~m~~qV~~~vk~ 388 (469)
+ .++.|+|.|+||+|.+++.++++.+-++.++++.++.+..+|||+.+..+..+|++...
T Consensus 157 f~~iniDLiyglP~Qt~~~~~~~l~~~~~l~p~hiS~Y~L~ie~~t~~~~~~~~lp~~~~~ 217 (378)
T PRK08949 157 LRSFNLDLMHGLPDQSLEEALDDLRQAIALNPPHLSWYQLTIEPNTLFGSRPPVLPDDDAL 217 (378)
T ss_pred CCCEEECCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEECCCCHHHHCCCCCCCHHHH
T ss_conf 9625023236899989999999999996669983788746864897376467789975999
No 31
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=99.67 E-value=1.3e-15 Score=136.19 Aligned_cols=190 Identities=18% Similarity=0.248 Sum_probs=131.0
Q ss_pred CCEEEEEECCCCCCCCCCCCHHH--HHHHHHHHHHHHHHHH-HHHHHHC-CCCEEEEECCCCCEEEECCCCC--CCCCCC
Q ss_conf 72578741233244681110012--2137641005889998-8763101-3310587314541134113444--310002
Q gi|255764472|r 175 GVTAFLTIQEGCDKFCTFCVVPY--TRGIEISRSLSQVVDE-ARKLIDN-GVCEITLLGQNVNAWRGKGLDG--EKCTFS 248 (469)
Q Consensus 175 ~~~a~ikI~~GC~~~CsfC~ip~--~RG~~rSr~~~~Iv~e-i~~l~~~-G~kEi~L~g~d~~~Y~g~~~~~--~~~~l~ 248 (469)
|..-||-| -=|..+|.||.--. .+.....+-++.+++| +..+... +-+.+ + +.|.|.|.++ ....|.
T Consensus 6 PlsLYiHI-PFC~~~C~yC~f~~~~~~~~~~~~Y~~al~~e~~~~~~~~~~~~~~-----~-tiy~GGGTPs~L~~~~L~ 78 (374)
T PRK06294 6 PLALYIHI-PFCSKKCHYCSFYTIPYKEESVSLYCNAVIKEGLKKLAPLRCTHFI-----D-TVFFGGGTPSLVPPDLIQ 78 (374)
T ss_pred EEEEEEEC-CCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEE-----E-EEEECCCHHHHCCHHHHH
T ss_conf 44899862-7899879999881024882339999999999999997643489817-----9-999789701638899999
Q ss_pred HHHHHHHCCCCCCCCCCC-CCCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 167886204443001354-4210001000366520221112201332111457899873033344114678999874013
Q gi|255764472|r 249 DLLYSLSEIKGLVRLRYT-TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 (469)
Q Consensus 249 ~Ll~~l~~i~~~~riR~~-s~~P~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~~~r~~~p 327 (469)
.|++.+..-. . .-++ =++|..++++.+..+++.+ ..-+-+++||-+|++|+.|||.|+.++..++++.+|++
T Consensus 79 ~ll~~i~~~~-~--~E~TiE~nP~~~~~~~l~~l~~~G--inRlSlGVQsf~d~~l~~lgR~h~~~~~~~~i~~~~~~-- 151 (374)
T PRK06294 79 DILKTLEAPH-A--TEITLEANPENLSFSYLRALAQTP--INRISIGVQTFDDPLLKLLGRTHSSSAAIEAVLECYEH-- 151 (374)
T ss_pred HHHHHHCCCC-C--CEEEEEECCCCCCHHHHHHHHHCC--CCEEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHC--
T ss_conf 9999740168-8--438998534769999999999729--87598972107678898738999999999999999975--
Q ss_pred CC-CCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEECCCHHHHHC
Q ss_conf 44-3200000135220124789886332210111002000011120123214
Q gi|255764472|r 328 DI-AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 (469)
Q Consensus 328 ~~-~i~tdiIvGfPgETeedf~~Tl~~i~~~~~~~~~vf~yS~r~gT~Aa~m 378 (469)
++ .++.|+|.|.||+|.++|+++++.+-+++++++.+|++.-+|+|+-++.
T Consensus 152 gf~~iniDLIyGlPgQt~~~~~~~l~~~~~l~p~hiS~Y~L~iep~t~~~~~ 203 (374)
T PRK06294 152 GFSNLSIDLIYGLPTQSLSDFIMDLHQALTLPITHISLYNLTIDPHTSFYKH 203 (374)
T ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEECCCCHHHHH
T ss_conf 9974332110478888889999999999734967455555576589658886
No 32
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=99.67 E-value=1e-15 Score=136.99 Aligned_cols=192 Identities=18% Similarity=0.264 Sum_probs=136.6
Q ss_pred EEEEECCCCCCCCCCCCHHH--HHHHHHHHHHHHHHHHHHHHHHCC-CCEEEEECCCCCEEEECCCCC--CCCCCCHHHH
Q ss_conf 78741233244681110012--213764100588999887631013-310587314541134113444--3100021678
Q gi|255764472|r 178 AFLTIQEGCDKFCTFCVVPY--TRGIEISRSLSQVVDEARKLIDNG-VCEITLLGQNVNAWRGKGLDG--EKCTFSDLLY 252 (469)
Q Consensus 178 a~ikI~~GC~~~CsfC~ip~--~RG~~rSr~~~~Iv~ei~~l~~~G-~kEi~L~g~d~~~Y~g~~~~~--~~~~l~~Ll~ 252 (469)
.||-| -=|...|+||.--. .+....+.-++.+++|++...+.. .+.-.+ + +.|.|.|.++ ....+.+|++
T Consensus 59 LYiHI-PFC~~~C~yC~F~~~~~~~~~~~~Y~~aL~~Ei~~~~~~~~~~~~~i---~-tvy~GGGTPs~L~~~~l~~l~~ 133 (447)
T PRK09058 59 LYIHI-PFCRTHCTFCGFFQNAWNPELVARYTDALIRELAMEADSPLTQSAPI---H-AVYFGGGTPTALSADDLARLIE 133 (447)
T ss_pred EEEEC-CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEE---E-EEEEECCHHHHCCHHHHHHHHH
T ss_conf 99982-54158689998848488812099999999999999854101269816---8-9998086347489999999999
Q ss_pred HHHCC---CCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 86204---443001354421000100036652022111220133211145789987303334411467899987401344
Q gi|255764472|r 253 SLSEI---KGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329 (469)
Q Consensus 253 ~l~~i---~~~~riR~~s~~P~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~~~r~~~p~~ 329 (469)
.|.+. ..+.-+-+- .+|..++++.++.+.+.+ ..-+-+++||-++++|+.|||.++.++..+.++.+|+. ...
T Consensus 134 ~i~~~f~l~~d~EiTiE-~nP~~~~~~~l~~l~~~G--vNRiSiGVQSf~~~vlk~lgR~h~~~~~~~~l~~l~~~-g~~ 209 (447)
T PRK09058 134 ALREYLPLAPDCEITLE-GRINGFDDEKIDAALDAG--ANRFSFGVQSFNTQVRRRAGRKDDREEVLAFLEELVAR-DRA 209 (447)
T ss_pred HHHHHCCCCCCCEEEEE-CCCCCCCHHHHHHHHHCC--CCEEEEECCCCCHHHHHHCCCCCCHHHHHHHHHHHHHC-CCC
T ss_conf 99976899888469883-387879999999999649--98057725448888998647999999999999999974-996
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEECCCHHHHHC
Q ss_conf 3200000135220124789886332210111002000011120123214
Q gi|255764472|r 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 (469)
Q Consensus 330 ~i~tdiIvGfPgETeedf~~Tl~~i~~~~~~~~~vf~yS~r~gT~Aa~m 378 (469)
.+..|+|.|+||+|.++|+++++.+-+++++++-+|.+...||||-.++
T Consensus 210 ~iniDLIyGlPgQT~e~~~~dl~~~~~l~p~his~Y~L~~~~~t~~~~~ 258 (447)
T PRK09058 210 AVVCDLIFGLPGQTPEIWQQDLAIVRDLGLDGVDLYALNVLPGTPLAKA 258 (447)
T ss_pred CEEEHHHCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEECCCCHHHHH
T ss_conf 3764764279889999999999999645998688765450489779999
No 33
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=99.67 E-value=1.5e-15 Score=135.80 Aligned_cols=191 Identities=19% Similarity=0.313 Sum_probs=135.4
Q ss_pred CCEEEEEECCCCCCCCCCCCHH--HHHH-HHHHHHHHHHHHHHHHHHHC-C-CCEEEEECCCCCEEEECCCCC--CCCCC
Q ss_conf 7257874123324468111001--2213-76410058899988763101-3-310587314541134113444--31000
Q gi|255764472|r 175 GVTAFLTIQEGCDKFCTFCVVP--YTRG-IEISRSLSQVVDEARKLIDN-G-VCEITLLGQNVNAWRGKGLDG--EKCTF 247 (469)
Q Consensus 175 ~~~a~ikI~~GC~~~CsfC~ip--~~RG-~~rSr~~~~Iv~ei~~l~~~-G-~kEi~L~g~d~~~Y~g~~~~~--~~~~l 247 (469)
|.+-||-| -=|...|.||.-. .++. ....+-++.+.+|++...+. + -+.|. ..|.|.|.++ ....+
T Consensus 50 plsLYiHI-PFC~~~C~YC~f~~~~~~~~~~~~~Yl~~L~~Ei~~~~~~~~~~~~v~------ti~~GGGTPs~L~~~~l 122 (453)
T PRK13347 50 PVSLYLHV-PFCRSLCWFCGCNTIITQRDAPVEAYVAALIREIRLVAALLPQRRRVS------QLHWGGGTPTILNPDQF 122 (453)
T ss_pred CEEEEEEC-CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEE------EEEECCCCHHHCCHHHH
T ss_conf 86999852-771680899989733778866799999999999999887627898078------99978848285999999
Q ss_pred CHHHHHHHCCCCCC-CCCCC-CCCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 21678862044430-01354-42100010003665202211122013321114578998730333441146789998740
Q gi|255764472|r 248 SDLLYSLSEIKGLV-RLRYT-TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 (469)
Q Consensus 248 ~~Ll~~l~~i~~~~-riR~~-s~~P~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~~~r~~ 325 (469)
..|+..|.+.-.+. ..-++ =++|..++++-++.+++.+ +.-+-+++||-++++|+.+||.++.++..++++.+|++
T Consensus 123 ~~ll~~l~~~f~~~~~~EitiE~nP~~~~~~~l~~l~~~G--vNRlSlGVQsfd~~vl~~lgR~h~~~~~~~av~~ar~~ 200 (453)
T PRK13347 123 ERLMAALRDAFDFAPEAEIAVEIDPRTVTAEMLQALAALG--FNRASFGVQDFDPQVQKAINRIQPEEMVARAVELLRAA 200 (453)
T ss_pred HHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHCC--CCEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHC
T ss_conf 9999999975899999669998677868999999998649--86588713457878999825989999999999999981
Q ss_pred CCCC-CCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEECCCHHHH
Q ss_conf 1344-32000001352201247898863322101110020000111201232
Q gi|255764472|r 326 RPDI-AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 (469)
Q Consensus 326 ~p~~-~i~tdiIvGfPgETeedf~~Tl~~i~~~~~~~~~vf~yS~r~gT~Aa 376 (469)
|+ .++.|+|.|.||+|.++|++|++-+-++.++++.+|.|...|++...
T Consensus 201 --Gf~~iniDLIyGlP~QT~~~~~~tL~~~~~l~pdhiS~Y~l~~~p~~~~~ 250 (453)
T PRK13347 201 --GFESINFDLIYGLPHQTVESFRETLDKVIALSPDRIAVFGYAHVPSRRKN 250 (453)
T ss_pred --CCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHH
T ss_conf --89865555552489998999999999998319997885232026532356
No 34
>PRK07094 biotin synthase; Provisional
Probab=99.64 E-value=4.2e-15 Score=132.46 Aligned_cols=193 Identities=14% Similarity=0.210 Sum_probs=146.8
Q ss_pred EEEEEECCCCCCCCCCCCHHHHH-H--HHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCCCHHHHH
Q ss_conf 57874123324468111001221-3--76410058899988763101331058731454113411344431000216788
Q gi|255764472|r 177 TAFLTIQEGCDKFCTFCVVPYTR-G--IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253 (469)
Q Consensus 177 ~a~ikI~~GC~~~CsfC~ip~~R-G--~~rSr~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y~g~~~~~~~~~l~~Ll~~ 253 (469)
++.|.++..|...|.||...... + +++ .+.|+|++.++...+.|+++++|+| |.+.......+.++++.
T Consensus 40 ~~iIn~Sn~C~edC~yC~~~~~n~~~~rY~-Ls~eeI~~~A~~a~~~G~~~~~lqs-------G~~~~~~~e~~~~ii~~ 111 (323)
T PRK07094 40 RGLIEFSNYCRRNCLYCGLRRSNKNIKRYR-LSPEEILECAKKAYELGYGTIVLQS-------GEDPYYTDEKIADIIKE 111 (323)
T ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCCCCC-CCHHHHHHHHHHHHHCCCCEEEEEC-------CCCCCCCHHHHHHHHHH
T ss_conf 987984689999993478766789977437-9999999999999986998899964-------89988669999999999
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCE
Q ss_conf 62044430013544210001000366520221112201332111457899873033344114678999874013443200
Q gi|255764472|r 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333 (469)
Q Consensus 254 l~~i~~~~riR~~s~~P~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~~~r~~~p~~~i~t 333 (469)
|.+..++. +-+ ..-.++.+-+..+++.+ ....|+-++..|+..-+.+.-.++.++-++.++.+++. |+.+.+
T Consensus 112 Ik~~~~l~-i~l---SlG~l~~e~~~~Lk~AG--~dry~~nlETs~~~~y~~i~p~~t~~~Rl~~l~~~k~~--G~~v~s 183 (323)
T PRK07094 112 IKKELDVA-ITL---SLGERSYEEYKAWKEAG--ADRYLLRHETADRELYEKLHPGMSFENRIQCLKDLKEL--GYEVGS 183 (323)
T ss_pred HHHCCCCE-EEE---ECCCCCHHHHHHHHHCC--CCEEECCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHC--CCCCCC
T ss_conf 86059945-997---57879999999999859--77441245656989867758999989999999999983--981043
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEECCCHHHHHCCCCCCHHH
Q ss_conf 00013522012478988633221011100200001112012321436889899
Q gi|255764472|r 334 DFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 (469)
Q Consensus 334 diIvGfPgETeedf~~Tl~~i~~~~~~~~~vf~yS~r~gT~Aa~m~~qV~~~v 386 (469)
.+|+|.||||.||..+.+-++++++++.+.+-+|-|.||||-+..+ ..+...
T Consensus 184 G~iiGlpGET~edr~~~l~~LreL~~~~v~i~~fiP~~gTPl~~~~-~~~~~~ 235 (323)
T PRK07094 184 GFMVGLPGQTLEDLADDILFLKELDLDMIGIGPFIPHPDTPLADEK-GGSLEL 235 (323)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCC-CCCHHH
T ss_conf 0277989999999999999998379988677255179999988999-979999
No 35
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=99.63 E-value=9.6e-15 Score=129.80 Aligned_cols=219 Identities=21% Similarity=0.303 Sum_probs=151.4
Q ss_pred CCEEEEEECCCCCCCCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHC-CCC-EEEEECCCCCEEEECCCCC--CCCCC
Q ss_conf 725787412332446811100122---1376410058899988763101-331-0587314541134113444--31000
Q gi|255764472|r 175 GVTAFLTIQEGCDKFCTFCVVPYT---RGIEISRSLSQVVDEARKLIDN-GVC-EITLLGQNVNAWRGKGLDG--EKCTF 247 (469)
Q Consensus 175 ~~~a~ikI~~GC~~~CsfC~ip~~---RG~~rSr~~~~Iv~ei~~l~~~-G~k-Ei~L~g~d~~~Y~g~~~~~--~~~~l 247 (469)
+.+.||-| -=|...|.||.-... ++...-.=++.+++|++..... |.+ +|- ..|.|.|.+. ....+
T Consensus 34 ~~slYiHi-PFC~~~C~YC~fn~~~~~~~~~~~~Y~~aL~~Ei~~~~~~~~~~~~v~------ti~~GGGTPslL~~~~l 106 (416)
T COG0635 34 PLSLYIHI-PFCVSKCPYCDFNSHVTKRGQPVDEYLDALLEEIELVAALLGGQREVK------TIYFGGGTPSLLSPEQL 106 (416)
T ss_pred CCEEEEEC-CCHHCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEE------EEEECCCCCCCCCHHHH
T ss_conf 73688872-321250887888545347777399999999999999886227887278------99976983267799999
Q ss_pred CHHHHHHHCCCC-CCC-CCCCC-CCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 216788620444-300-13544-210001000366520221112201332111457899873033344114678999874
Q gi|255764472|r 248 SDLLYSLSEIKG-LVR-LRYTT-SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 (469)
Q Consensus 248 ~~Ll~~l~~i~~-~~r-iR~~s-~~P~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~~~r~ 324 (469)
..|+..|.+.-. ... .-++- .+|..++.+-++.+++.+ ..-+-++|||-++++||.+||.++.++..++++.+|+
T Consensus 107 ~~ll~~l~~~~~~~~~~~EitiE~nP~~~~~e~~~~l~~~G--vNRiSlGVQsf~~~~lk~lgR~h~~~~~~~a~~~~~~ 184 (416)
T COG0635 107 ERLLKALRELFNDLDPDAEITIEANPGTVEAEKFKALKEAG--VNRISLGVQSFNDEVLKALGRIHDEEEAKEAVELARK 184 (416)
T ss_pred HHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHC--CCEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 99999999972357888279995088866899999999829--8779860145998999974788878999999999986
Q ss_pred HCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEECCCHHHHHCCCC---CCH-HHHHHHHHHHHHHHHH
Q ss_conf 013443200000135220124789886332210111002000011120123214368---898-9999999999999999
Q gi|255764472|r 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ---VDE-NVKAERLLCLQKKLRE 400 (469)
Q Consensus 325 ~~p~~~i~tdiIvGfPgETeedf~~Tl~~i~~~~~~~~~vf~yS~r~gT~Aa~m~~q---V~~-~vk~~R~~~l~~~~~~ 400 (469)
.. --.+..|+|.|.|++|.++|.+|++.+-+++++++-+|.|...|+|+.++...+ +|+ +.+.++.....+...+
T Consensus 185 ~g-~~~in~DLIyglP~QT~~~~~~~l~~a~~l~pdhis~y~L~~~p~t~~~~~~~~~~~lP~~d~~~~~~~~~~e~L~~ 263 (416)
T COG0635 185 AG-FTSINIDLIYGLPGQTLESLKEDLEQALELGPDHLSLYSLAIEPGTKFAQRKIKGKALPDEDEKADMYELVEELLEK 263 (416)
T ss_pred CC-CCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEECCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 38-97478872438999999999999999983499878646268658856766233577899868999999999999997
Q ss_pred HHH
Q ss_conf 999
Q gi|255764472|r 401 QQV 403 (469)
Q Consensus 401 ~~~ 403 (469)
..+
T Consensus 264 ~Gy 266 (416)
T COG0635 264 AGY 266 (416)
T ss_pred CCC
T ss_conf 796
No 36
>PRK00955 hypothetical protein; Provisional
Probab=99.63 E-value=1.7e-15 Score=135.46 Aligned_cols=198 Identities=22% Similarity=0.350 Sum_probs=133.1
Q ss_pred EEECCCCCCCCCCCCHHHHHHH-HHHHHHHHHHHHHHHHHHC-CCCEEE--EECCCCCEEEEC-----------------
Q ss_conf 7412332446811100122137-6410058899988763101-331058--731454113411-----------------
Q gi|255764472|r 180 LTIQEGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARKLIDN-GVCEIT--LLGQNVNAWRGK----------------- 238 (469)
Q Consensus 180 ikI~~GC~~~CsfC~ip~~RG~-~rSr~~~~Iv~ei~~l~~~-G~kEi~--L~g~d~~~Y~g~----------------- 238 (469)
|.+.|||-..||||+|-.--|+ ..||+.++|++|++.+.+. ++|-.+ +-|.--+.|+-.
T Consensus 295 it~hRGCfGgCsFCaIt~HQGr~I~sRS~~SIl~E~~~~~~~p~FkG~IsDvGGPTANmy~~~C~~~~~~g~C~~~~Cl~ 374 (599)
T PRK00955 295 ITSHRGCFGGCSFCAITFHQGRFIQSRSKESILREAKELTQMPDFKGYIHDVGGPTANFRKMACKKQEKCGACKNKQCLF 374 (599)
T ss_pred EEECCCCCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHCCCCCCCHHHCCCCCCCCCCC
T ss_conf 10247625678210220117870344488999999999973889877871389824654306479802028899967899
Q ss_pred -----CCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCC-----CCCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCC
Q ss_conf -----34443100021678862044430013544210-----00100036652022111220133211145789987303
Q gi|255764472|r 239 -----GLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP-----RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR 308 (469)
Q Consensus 239 -----~~~~~~~~l~~Ll~~l~~i~~~~riR~~s~~P-----~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R 308 (469)
.++.+...+.+||+++.+++|.+++.+.|-== .+-+++.++.+..+ .+.-+|-+.=+|.|+.||+.|++
T Consensus 375 P~~C~nL~~dh~~~~~LLrk~r~lpgVKkvfi~SGiRyDl~l~d~~~~yl~eL~~~-HvsGqLKVAPEH~~~~VL~~M~K 453 (599)
T PRK00955 375 PKPCKNLDVDHTEYLDLLRKVRKLPGVKKVFIRSGIRYDYLLHDKNDEFFKELCEH-HVSGQLKVAPEHISDRVLKYMGK 453 (599)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHCCCCCHHHHHHHHHH-HCCCEEEECCCCCCHHHHHHHCC
T ss_conf 98888987883899999999854899767774122655555136886999999977-07870675775468378897479
Q ss_pred CC--CCCHHHHHHHHHH-HHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEECCCHHHHHC
Q ss_conf 33--4411467899987-4013443200000135220124789886332210111002000011120123214
Q gi|255764472|r 309 RH--TAYEYRQIIDRIR-SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 (469)
Q Consensus 309 ~~--~~e~~~~~i~~~r-~~~p~~~i~tdiIvGfPgETeedf~~Tl~~i~~~~~~~~~vf~yS~r~gT~Aa~m 378 (469)
+. .-+.|.+.++++- +.-..-.+.--||.++||-|.+|..++-.|+++.++.-=.|=-|.|-|||.|..|
T Consensus 454 P~~~~~~~F~~~F~~~~k~~Gk~QylvPY~issHPGct~~dm~~La~~lk~~~~~peQVQdF~PTP~T~sT~M 526 (599)
T PRK00955 454 PSREVYDKFVKKFDRINKKLGKKQFLVPYLMSSHPGSTLEDAIELAEYLKDLGYQPEQVQDFYPTPGTLSTTM 526 (599)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCHHHCEEEECCCCHHHHHH
T ss_conf 9818999999999999998589730477788169998999999999999973999777311007851898889
No 37
>PRK01254 hypothetical protein; Provisional
Probab=99.63 E-value=1.5e-15 Score=135.83 Aligned_cols=239 Identities=19% Similarity=0.281 Sum_probs=154.3
Q ss_pred EEECCCCCCCCCCCCHHHHHHH-HHHHHHHHHHHHHHHHHH--CCCCEEE--EECCCCCEEEE-----------------
Q ss_conf 7412332446811100122137-641005889998876310--1331058--73145411341-----------------
Q gi|255764472|r 180 LTIQEGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARKLID--NGVCEIT--LLGQNVNAWRG----------------- 237 (469)
Q Consensus 180 ikI~~GC~~~CsfC~ip~~RG~-~rSr~~~~Iv~ei~~l~~--~G~kEi~--L~g~d~~~Y~g----------------- 237 (469)
|.|.|||-..||||+|..--|+ ..||+.++|++|++.+.+ .|++-++ |-|.--+.|+-
T Consensus 376 v~~~RGCfGgCsFCaIt~HQGR~IqSRS~eSIl~E~~~i~~k~p~FkG~IsDvGGPTANMy~~~C~~~~~~~~C~r~sCl 455 (742)
T PRK01254 376 VNIMRGCFGGCSFCSITEHEGRIIQSRSEESIINEIEAIRDKVPGFTGVISDLGGPTANMYRLGCKSPKAEQTCRRLSCV 455 (742)
T ss_pred EEECCCCCCCCCEEEEEECCCCEEEECCHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHCCCCCCCCHHCCCCCCCCCC
T ss_conf 31348544578413223016863343278999999999996489986776358871365431547981100789997789
Q ss_pred -----CCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCC---CCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCC
Q ss_conf -----134443100021678862044430013544210001---000366520221112201332111457899873033
Q gi|255764472|r 238 -----KGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDM---SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR 309 (469)
Q Consensus 238 -----~~~~~~~~~l~~Ll~~l~~i~~~~riR~~s~~P~~~---~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R~ 309 (469)
..++.+...+.+|++++.+++|++.+.+.|-==.++ +++.++.+..+ .+--+|-+.=+|-++.||+.|+++
T Consensus 456 ~P~iC~nL~~dH~~~i~Llrk~R~lpGVKkVfI~SGiRyDLa~~d~eylkELv~h-HVsGqLKVAPEH~~~~vL~~M~KP 534 (742)
T PRK01254 456 YPDICPHLDTDHSPTIDLYRRARDLKGIKKILIASGVRYDLAVEDPEYVKELVTH-HVGGYLKIAPEHTEEGPLSKMMKP 534 (742)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHCCHHHHHHHHHH-HCCCCEEECCCCCCHHHHHHHCCC
T ss_conf 9877888878809999999998628986555531205455553388999999987-368706657654685899986299
Q ss_pred C--CCCHHHHHHHHHHH-HCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEECCCHHHHHCC----C--
Q ss_conf 3--44114678999874-0134432000001352201247898863322101110020000111201232143----6--
Q gi|255764472|r 310 H--TAYEYRQIIDRIRS-VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML----E-- 380 (469)
Q Consensus 310 ~--~~e~~~~~i~~~r~-~~p~~~i~tdiIvGfPgETeedf~~Tl~~i~~~~~~~~~vf~yS~r~gT~Aa~m~----~-- 380 (469)
. +.+.|.+.++++-+ +-..-.+.--||.++||-|++|..++-.|+++..|.-=.|=-|.|-|+|.|..|= |
T Consensus 535 ~~~~y~rF~~~F~~~sk~~GK~QyLiPYfisaHPG~t~~Dm~~LA~~lk~~~~~peQVQdF~PTP~t~sT~MYyTg~dPl 614 (742)
T PRK01254 535 GMGSYDRFKELFDKYSKEAGKEQYLIPYFISAHPGTTDEDMVNLALWLKKNRFRLDQVQNFYPSPMANATTMYYTGKNPL 614 (742)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCHHHCEEEECCCCHHHHHHHHCCCCCC
T ss_conf 86899999999999999858970368778706899899999999999997399975631202786178887887077866
Q ss_pred ----------CCCHHHHHHHHHH-HH---------HHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf ----------8898999999999-99---------999999999999857978999984
Q gi|255764472|r 381 ----------QVDENVKAERLLC-LQ---------KKLREQQVSFNDACVGQIIEVLIE 419 (469)
Q Consensus 381 ----------qV~~~vk~~R~~~-l~---------~~~~~~~~~~~~~~iG~~~~Vlve 419 (469)
.|+...+.+|.++ |. -+.+.+...-.+..||.--..||-
T Consensus 615 ~~v~~t~e~V~v~k~~~ek~lqrAll~y~~P~N~~lv~eaL~~~GR~dLIG~g~~cLip 673 (742)
T PRK01254 615 KKVKYKSEDVPVPKGDRQRRLHKALLRYHDPANWPLIREALEAMGKKHLIGNRRDCLVP 673 (742)
T ss_pred CCCCCCCCEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCHHHHCCCCCCCCCC
T ss_conf 45566788623678888999999998634823389999999980816305789776148
No 38
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=99.63 E-value=4.2e-15 Score=132.50 Aligned_cols=189 Identities=19% Similarity=0.243 Sum_probs=133.6
Q ss_pred CCEEEEEECCCCCCCCCCCC--HHHHHH-HHHHHHHHHHHHHHHHHHHC-CC-CEEEEECCCCCEEEECCCCC--CCCCC
Q ss_conf 72578741233244681110--012213-76410058899988763101-33-10587314541134113444--31000
Q gi|255764472|r 175 GVTAFLTIQEGCDKFCTFCV--VPYTRG-IEISRSLSQVVDEARKLIDN-GV-CEITLLGQNVNAWRGKGLDG--EKCTF 247 (469)
Q Consensus 175 ~~~a~ikI~~GC~~~CsfC~--ip~~RG-~~rSr~~~~Iv~ei~~l~~~-G~-kEi~L~g~d~~~Y~g~~~~~--~~~~l 247 (469)
|.+-||-| -=|...|.||. .-.++. .....-++.+.+|++...+. |- ++|. ..|.|.|.++ ....+
T Consensus 51 plSLYiHi-PFC~~~C~YC~~~~~~~~~~~~~~~Yl~~L~~Ei~~~~~~l~~~~~v~------~i~~GGGTPs~L~~~~l 123 (456)
T PRK09249 51 PLSLYVHI-PFCRSLCYYCGCNKIITRDHEKADPYLDALEKEIALVAPLLPGGRKVS------QLHWGGGTPTFLSPEQL 123 (456)
T ss_pred CEEEEEEC-CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEE------EEEECCCCHHHCCHHHH
T ss_conf 55999851-781682899998013578855799999999999999887617898367------99978967064999999
Q ss_pred CHHHHHHHCCC---CCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 21678862044---430013544210001000366520221112201332111457899873033344114678999874
Q gi|255764472|r 248 SDLLYSLSEIK---GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRS 324 (469)
Q Consensus 248 ~~Ll~~l~~i~---~~~riR~~s~~P~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~~~r~ 324 (469)
..|+..|.+.- ...-+-+ =++|..++++.++.+++.+ +.-+-+++||-++.+|+.|||.++.++..++++.+|+
T Consensus 124 ~~l~~~l~~~f~~~~~~Eiti-E~nP~~~~~~~l~~l~~~G--vnRiSlGVQsfd~~vl~~igR~h~~~~~~~~i~~ar~ 200 (456)
T PRK09249 124 TRLMALLREHFNFAPDAEISI-EIDPRELDLEMLDALRELG--FNRLSLGVQDFDPEVQKAINRIQPFELTFALVEAARE 200 (456)
T ss_pred HHHHHHHHHHCCCCCCCEEEE-EECCCCCCHHHHHHHHHCC--CCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 999999998668898835999-8434758799999998459--7568860535787999985288999999999999998
Q ss_pred HCCCC-CCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEECCCHHH
Q ss_conf 01344-3200000135220124789886332210111002000011120123
Q gi|255764472|r 325 VRPDI-AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 (469)
Q Consensus 325 ~~p~~-~i~tdiIvGfPgETeedf~~Tl~~i~~~~~~~~~vf~yS~r~gT~A 375 (469)
. |+ .++.|+|.|.||+|.++|++|++-+-++.++++-+|.|...|....
T Consensus 201 ~--Gf~~in~DLIyGLP~QT~~~~~~tl~~~~~l~Pdhis~y~yah~P~~~~ 250 (456)
T PRK09249 201 L--GFTSINFDLIYGLPKQTPESFARTLEKVLELRPDRLAVFNYAHVPWLFK 250 (456)
T ss_pred C--CCCCCCHHHHHCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHH
T ss_conf 1--9972104886069987699999999999655998899502234720455
No 39
>TIGR01212 TIGR01212 radical SAM protein, TIGR01212 family; InterPro: IPR005911 This uncharacterised protein family shows significant similarity to IPR005910 from INTERPRO, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain..
Probab=99.63 E-value=2.1e-15 Score=134.74 Aligned_cols=185 Identities=22% Similarity=0.312 Sum_probs=142.3
Q ss_pred EEECCCCCCC--------CCCCCH---HHHHH---HHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCCCCC
Q ss_conf 7412332446--------811100---12213---764100588999887631013310587314541134113444310
Q gi|255764472|r 180 LTIQEGCDKF--------CTFCVV---PYTRG---IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKC 245 (469)
Q Consensus 180 ikI~~GC~~~--------CsfC~i---p~~RG---~~rSr~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y~g~~~~~~~~ 245 (469)
|-+.=+||++ |+||.. |.+-+ ..++.--++|-++.+..-+.|++... +|+-...+
T Consensus 22 ~~gGF~CPNRDGT~G~GGCtfC~~a~~~~f~~~~~~~~~~~~~~i~~~~~~~~k~G~kkf~-------aYFQ~yTn---- 90 (307)
T TIGR01212 22 LHGGFSCPNRDGTIGRGGCTFCNDASKPSFADEVTQARIPIKEQIKKRKKKYKKDGIKKFI-------AYFQAYTN---- 90 (307)
T ss_pred EECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEE-------EEECCCCC----
T ss_conf 6457887788870025772521788888524510235446899999999765315731578-------99738876----
Q ss_pred CCC--HHHHHH----HCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCC-CC-CCEEEEEECCCHHHHHHHCCCCCCCHHHH
Q ss_conf 002--167886----20444300135442100010003665202211-12-20133211145789987303334411467
Q gi|255764472|r 246 TFS--DLLYSL----SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDV-LM-PYLHLPVQSGSDRILKSMNRRHTAYEYRQ 317 (469)
Q Consensus 246 ~l~--~Ll~~l----~~i~~~~riR~~s~~P~~~~~~li~~~~~~~~-i~-~~lhlpiQSgs~~vLk~M~R~~~~e~~~~ 317 (469)
++| +.|++. .+.+++.-|-++ .-|+-++|+.+|++++... -+ =++.++|||++++.|+++||+|+..+|.+
T Consensus 91 TYApve~Lk~~y~~aL~~~~vVGlsvg-TRPDC~P~~VLDlL~ey~~~GyevWvELGLQtah~~TL~~INRgHd~~~y~~ 169 (307)
T TIGR01212 91 TYAPVEVLKEMYEQALSEDDVVGLSVG-TRPDCVPDEVLDLLAEYKERGYEVWVELGLQTAHDRTLKKINRGHDFACYVD 169 (307)
T ss_pred CCHHHHHHHHHHHHHHHHCCEEEEEEC-CCCCCCHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHCCCCCHHHHHH
T ss_conf 500268888999987632780577536-8898774789999999954975899960535655899998514378789999
Q ss_pred HHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEECCCHHHHHC
Q ss_conf 8999874013443200000135220124789886332210111002000011120123214
Q gi|255764472|r 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 (469)
Q Consensus 318 ~i~~~r~~~p~~~i~tdiIvGfPgETeedf~~Tl~~i~~~~~~~~~vf~yS~r~gT~Aa~m 378 (469)
++.++|++ |+-+-+=+|+|.|||+.+|+.+|++.+-++..|-+=+++-.--+||+-++|
T Consensus 170 a~~~~~kr--GikVC~H~I~GLPgE~~~~~~eTak~~~~l~vdGiKiH~LhvvkGt~m~k~ 228 (307)
T TIGR01212 170 AVKRARKR--GIKVCSHVILGLPGEDREEMLETAKIVASLDVDGIKIHPLHVVKGTKMAKQ 228 (307)
T ss_pred HHHHHHHC--CCEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEEEECCHHHHH
T ss_conf 99999765--988999987428988888999999999837988488720178735757887
No 40
>PRK08629 coproporphyrinogen III oxidase; Provisional
Probab=99.61 E-value=6.5e-15 Score=131.07 Aligned_cols=191 Identities=19% Similarity=0.281 Sum_probs=131.9
Q ss_pred CCCCEEEEEECCCCCCCCCCCCHHH--HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCCCHH
Q ss_conf 7772578741233244681110012--21376410058899988763101331058731454113411344431000216
Q gi|255764472|r 173 KRGVTAFLTIQEGCDKFCTFCVVPY--TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250 (469)
Q Consensus 173 ~~~~~a~ikI~~GC~~~CsfC~ip~--~RG~~rSr~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y~g~~~~~~~~~l~~L 250 (469)
.+++.=||-| -=|...|.||.-.. .+......-++.+++|++...+.|.+ + + +.|.|.|.++- .-.+|
T Consensus 41 ~~~~~LYiHI-PFC~~~C~YC~F~~~~~~~~~~~~Y~~aL~kEi~~~~~~~~~-i-----~-tiy~GGGTPs~--L~~~l 110 (424)
T PRK08629 41 GKKYMLYAHV-PFCHTLCPYCSFHRFLFKEDKARAYFISLRKEMEMVKELGYD-F-----E-SMYVGGGTTTI--LEDEL 110 (424)
T ss_pred CCEEEEEEEC-CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC-C-----C-EEEECCCHHHC--CHHHH
T ss_conf 9856899890-540798889989582688241999999999999998853998-3-----7-69977971225--79999
Q ss_pred HHHHHCCCCCCCCCCCC--CCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 78862044430013544--2100010003665202211122013321114578998730333441146789998740134
Q gi|255764472|r 251 LYSLSEIKGLVRLRYTT--SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 (469)
Q Consensus 251 l~~l~~i~~~~riR~~s--~~P~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~~~r~~~p~ 328 (469)
.+.|..+...+.+.=.+ ++|..++++-++.++.. ..-+-+++||-+|.+|+.|||.|+.+...++++.++++...
T Consensus 111 ~~~l~~~~~~f~~~EiTiE~nP~~~~~~~l~~l~~~---vNRiSlGVQsf~~~~L~~lgR~h~~~~~~~~~~~~~~a~~~ 187 (424)
T PRK08629 111 AKTLELAKKLFSIKEVSCESDPNHLDPPGLKQLKGL---IDRLSIGVQSFNDDILKMVDRYEKFGSGQETFEKIMAAKGL 187 (424)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHH---CCEEEEECCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 999999986489824999538686899999999864---25166623669988999809999854699999999997634
Q ss_pred -CCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEECCCHHHH
Q ss_conf -432000001352201247898863322101110020000111201232
Q gi|255764472|r 329 -IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 (469)
Q Consensus 329 -~~i~tdiIvGfPgETeedf~~Tl~~i~~~~~~~~~vf~yS~r~gT~Aa 376 (469)
-.++.|+|.|+||+|.++|++|++.+-+++++++.+|++...|+|...
T Consensus 188 f~niniDLIyGlP~QT~~~~~~~l~~~~~l~p~hIS~Y~L~iep~t~~~ 236 (424)
T PRK08629 188 FPIINVDLIFNFPGQTDEVLQHDLDIAKRLDPRQITTYPLMKSHQTRKS 236 (424)
T ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEECCCCEECCCCCHH
T ss_conf 4625353232799999999999999998179898986366226472134
No 41
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=99.56 E-value=1.3e-14 Score=128.89 Aligned_cols=179 Identities=22% Similarity=0.324 Sum_probs=128.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH----C--CCCEEEEECCCCCEEEECCCC--CCCCCCCHHHHHHHCCCCC
Q ss_conf 6811100122137641005889998876310----1--331058731454113411344--4310002167886204443
Q gi|255764472|r 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLID----N--GVCEITLLGQNVNAWRGKGLD--GEKCTFSDLLYSLSEIKGL 260 (469)
Q Consensus 189 ~CsfC~ip~~RG~~rSr~~~~Iv~ei~~l~~----~--G~kEi~L~g~d~~~Y~g~~~~--~~~~~l~~Ll~~l~~i~~~ 260 (469)
.|+||.. ..+|.+-.-+...|.++++.-++ . +.| .+ +|.-.-.+ .....|.+.-+...+.+++
T Consensus 45 GCtFC~~-~g~~d~~~~~~~~i~~Q~~~q~~~~~kK~~~~k--yi------aYFQ~~TNTyApvevLre~ye~aL~~~~V 115 (312)
T COG1242 45 GCTFCSV-AGSGDFAGQPKISIAEQFKEQAERMHKKWKRGK--YI------AYFQAYTNTYAPVEVLREMYEQALSEAGV 115 (312)
T ss_pred CEEEECC-CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC--EE------EEEECCCCCCCCHHHHHHHHHHHHCCCCE
T ss_conf 6465067-788763458667789999999999987515786--79------99814666667599999999997275880
Q ss_pred CCCCCCCCCCCCCCCHHHHHHCCCC-CCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCC
Q ss_conf 0013544210001000366520221-112201332111457899873033344114678999874013443200000135
Q gi|255764472|r 261 VRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGF 339 (469)
Q Consensus 261 ~riR~~s~~P~~~~~~li~~~~~~~-~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~~~r~~~p~~~i~tdiIvGf 339 (469)
.-+-+++ -|+.++|+.++.+++.. +..-++.+++||.++++|++.||+|+.+.|.+++.++|+. ++-+-+-+|+|.
T Consensus 116 VGLsIgT-RPDClpd~VldlL~e~~~r~~vWvELGLQT~h~~Tlk~iNRgHd~~~y~dav~r~rkr--gIkvc~HiI~GL 192 (312)
T COG1242 116 VGLSIGT-RPDCLPDDVLDLLAEYNKRYEVWVELGLQTAHDKTLKRINRGHDFACYVDAVKRLRKR--GIKVCTHLINGL 192 (312)
T ss_pred EEEEECC-CCCCCCHHHHHHHHHHHHHEEEEEEECCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHC--CCEEEEEEEECC
T ss_conf 4775058-9988818999999998644578877453055589999876245449999999999974--974988884079
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCHHEEECCCHHHHHCC
Q ss_conf 2201247898863322101110020000111201232143
Q gi|255764472|r 340 PGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 (469)
Q Consensus 340 PgETeedf~~Tl~~i~~~~~~~~~vf~yS~r~gT~Aa~m~ 379 (469)
||||.+++.+|++.+-.+..+-+-+.+----+|||-++|=
T Consensus 193 PgE~~~~mleTak~v~~~~v~GIKlH~LhvvkgT~m~k~Y 232 (312)
T COG1242 193 PGETRDEMLETAKIVAELGVDGIKLHPLHVVKGTPMEKMY 232 (312)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEEEEEECCCHHHHHH
T ss_conf 8888899999999998668753888878886387599999
No 42
>PRK06256 biotin synthase; Validated
Probab=99.36 E-value=1.2e-11 Score=106.60 Aligned_cols=195 Identities=14% Similarity=0.206 Sum_probs=134.1
Q ss_pred EEEEEECC-CCCCCCCCCCHHH---HHH-HHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCCCHHH
Q ss_conf 57874123-3244681110012---213-764100588999887631013310587314541134113444310002167
Q gi|255764472|r 177 TAFLTIQE-GCDKFCTFCVVPY---TRG-IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251 (469)
Q Consensus 177 ~a~ikI~~-GC~~~CsfC~ip~---~RG-~~rSr~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y~g~~~~~~~~~l~~Ll 251 (469)
.+.|.++. .|+..|.||.--. +.+ +++-.+.++|+++++...+.|++++.|++ +|++.+ ...|..++
T Consensus 57 ~~iin~kng~C~edC~yCaqs~~~~~~~~~y~ll~~eeI~~~a~~a~~~G~~~~~lvt------sg~~~~--~~~~e~v~ 128 (325)
T PRK06256 57 NSIINLKSGLCPEDCGYCSQSAGSSSPIYRYAWLDIEEIVEAAKEAIENGAGRFCIVA------SGRGPS--GREVDQVI 128 (325)
T ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEE------ECCCCC--HHHHHHHH
T ss_conf 9888761898899996298907678997412789999999999999986998899986------045897--67899999
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf 88620444300135442100010003665202211122013321114578998730333441146789998740134432
Q gi|255764472|r 252 YSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331 (469)
Q Consensus 252 ~~l~~i~~~~riR~~s~~P~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~~~r~~~p~~~i 331 (469)
+.+..+....-+.+ .+..-.++.+-+..+++.+ +- ..|.-+++ |.+.-....-.++.++.++.++.++++ |+.+
T Consensus 129 ~~i~~Ik~~~~l~i-~~slG~l~~e~~~~LkeAG-vd-~y~~nlET-s~~~f~~i~~tht~~~Rl~ti~~a~~a--Gi~v 202 (325)
T PRK06256 129 EAVKAIKEETDLEI-CACLGLLTEEQAERLKEAG-VD-RYNHNLET-SRSYFPNVVTTHTYEDRVDTCEMVKAA--GIEP 202 (325)
T ss_pred HHHHHHHHCCCEEE-EEECCCCCHHHHHHHHHCC-CC-EECCCCCC-CHHHCCCCCCCCCHHHHHHHHHHHHHC--CCCC
T ss_conf 99999862289368-8734889999999999869-98-88666440-687638868998899999999999985--9964
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEECCCHHHHHCCCCCCHHHH
Q ss_conf 00000135220124789886332210111002000011120123214368898999
Q gi|255764472|r 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 (469)
Q Consensus 332 ~tdiIvGfPgETeedf~~Tl~~i~~~~~~~~~vf~yS~r~gT~Aa~m~~qV~~~vk 387 (469)
.+.+|+|. |||.||.-+.+-++++++++.+.+-.|-|.||||-...+ .+++...
T Consensus 203 csG~i~Gl-GEt~edrve~l~~Lr~l~~~sipin~l~P~~gTpl~~~~-~l~~~e~ 256 (325)
T PRK06256 203 CSGGIIGM-GETLEDRAEHAFFLKELDADSIPINFLNPIKGTPLEDLP-ELTPLEC 256 (325)
T ss_pred CCCEEECC-CCCHHHHHHHHHHHHCCCCCEEECCCCEECCCCCCCCCC-CCCHHHH
T ss_conf 66437668-999899999999997199988954670106998668899-9899999
No 43
>PRK06267 hypothetical protein; Provisional
Probab=99.36 E-value=1.4e-11 Score=106.10 Aligned_cols=186 Identities=15% Similarity=0.215 Sum_probs=135.0
Q ss_pred EEEEEECCCCC--CCCCCCCHHHHH---H---HHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCCC
Q ss_conf 57874123324--468111001221---3---764100588999887631013310587314541134113444310002
Q gi|255764472|r 177 TAFLTIQEGCD--KFCTFCVVPYTR---G---IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS 248 (469)
Q Consensus 177 ~a~ikI~~GC~--~~CsfC~ip~~R---G---~~rSr~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y~g~~~~~~~~~l~ 248 (469)
++.|.++.-|. ..|.||.+-.-+ + ++| +++++|+++++...+.|++-++|+| |.|++ ...+.
T Consensus 28 rglIefsN~C~~~~dC~YCg~sa~~~k~k~p~ryR-~s~EeIl~~A~~~~~~G~kt~vLqs-------Gedyt--~eel~ 97 (324)
T PRK06267 28 ERALFLGWYCNLGDPCKFCFMSTQKDKIKDPLKAR-RRPESILAEAIIMKRIGWKLEFISG-------GYGYT--TEEIN 97 (324)
T ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHH-CCHHHHHHHHHHHHHHCCCEEEEEC-------CCCCC--HHHHH
T ss_conf 78888825358999987687777777776466552-8999999999999983999799804-------87799--89999
Q ss_pred HHHHHHHCCCCC-CCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 167886204443-0013544210001000366520221112201332111457899873033344114678999874013
Q gi|255764472|r 249 DLLYSLSEIKGL-VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRP 327 (469)
Q Consensus 249 ~Ll~~l~~i~~~-~riR~~s~~P~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~~~r~~~p 327 (469)
++++.+.++.+. .++-++ ..+.+-....... .++.+ +++.++..-+.+.=.++.++-.+.+..+++.
T Consensus 98 ~ii~~IK~i~~~avtLSlG-----~~s~e~~~~~~~a-G~~~~----lETan~~ly~~i~p~~s~e~Ri~~l~~lk~~-- 165 (324)
T PRK06267 98 DIIEMISYIQGSKQYLNVG-----IIDFENLNLNEIE-GVVGA----VETVNPKLHEELCPGKPLDKIKEMLKKAKDL-- 165 (324)
T ss_pred HHHHHHHHHCCCCEEEECC-----CCCHHHHHHHHHC-CHHHH----HHCCCHHHHCCCCCCCCHHHHHHHHHHHHHC--
T ss_conf 9999998601871697158-----7879999777663-70142----4147988870279999889999999999983--
Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEECCCHHHHHCCCCCCHHH
Q ss_conf 44320000013522012478988633221011100200001112012321436889899
Q gi|255764472|r 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 (469)
Q Consensus 328 ~~~i~tdiIvGfPgETeedf~~Tl~~i~~~~~~~~~vf~yS~r~gT~Aa~m~~qV~~~v 386 (469)
|..+++.+|||. |||.||..+.+.|++++.++.+++-+|-|.||||-..-+ +.++..
T Consensus 166 G~e~gsG~ivGl-GET~ed~~~~~~~lkel~~d~I~I~~f~P~~gTP~en~p-~~t~~e 222 (324)
T PRK06267 166 GLKTGITIILGL-GETEDDIELLLNLIEELNLDRITFYSLNPQKETIFEGKP-SPTTLE 222 (324)
T ss_pred CCCEEEEEEEEC-CCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCC-CCCHHH
T ss_conf 983200468737-988999999999999769997632584589999889999-989999
No 44
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=99.25 E-value=3e-09 Score=88.75 Aligned_cols=268 Identities=21% Similarity=0.272 Sum_probs=168.3
Q ss_pred EEEE--CCCCCCCCCCCCH---HHHHHHH--HHHHHHHHHHHHHHHHHC--CCCEEEEECCCCCEEEECCCCCCCCCCCH
Q ss_conf 8741--2332446811100---1221376--410058899988763101--33105873145411341134443100021
Q gi|255764472|r 179 FLTI--QEGCDKFCTFCVV---PYTRGIE--ISRSLSQVVDEARKLIDN--GVCEITLLGQNVNAWRGKGLDGEKCTFSD 249 (469)
Q Consensus 179 ~ikI--~~GC~~~CsfC~i---p~~RG~~--rSr~~~~Iv~ei~~l~~~--G~kEi~L~g~d~~~Y~g~~~~~~~~~l~~ 249 (469)
.|++ +.||+..|-||++ |+.|-+- --..+|..++..+..++. +--|.-|-||-- ++.-+.+.+
T Consensus 108 viqVRp~tgCnlnCIfCSVdeGp~SrtR~~dy~Vd~eyLl~w~~kVa~~KgkglEaHlDGqGE--------P~lYP~l~~ 179 (414)
T COG2100 108 VIQVRPSTGCNLNCIFCSVDEGPYSRTRKLDYVVDPEYLLEWFEKVARFKGKGLEAHLDGQGE--------PLLYPHLVD 179 (414)
T ss_pred EEEECCCCCCCCEEEEEECCCCCCCCEECCCEEECHHHHHHHHHHHHHHHCCCEEEEECCCCC--------CCCCHHHHH
T ss_conf 799647766432058985257864330025617568999999999996407872787537888--------754533999
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHC--CCCCCCHHHHHHHHHHHHCC
Q ss_conf 6788620444300135442100010003665202211122013321114578998730--33344114678999874013
Q gi|255764472|r 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN--RRHTAYEYRQIIDRIRSVRP 327 (469)
Q Consensus 250 Ll~~l~~i~~~~riR~~s~~P~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~--R~~~~e~~~~~i~~~r~~~p 327 (469)
|++++.++++...+-+- .|-..+++++++.+.+.+ ..-+.+++.|.+++.-|.|- +.|+.+..+++.+.+.+.--
T Consensus 180 lVqalk~~~~v~vVSmQ-Tng~~L~~~lv~eLeeAG--LdRiNlSv~aLDpk~Ak~L~G~~dYdv~kvle~aE~i~~a~i 256 (414)
T COG2100 180 LVQALKEHKGVEVVSMQ-TNGVLLSKKLVDELEEAG--LDRINLSVDALDPKLAKMLAGRKDYDVKKVLEVAEYIANAGI 256 (414)
T ss_pred HHHHHHCCCCCEEEEEE-ECCEECCHHHHHHHHHHC--CCEEEEECCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 99997438984289985-076444599999999708--755886202379889877428401178999999999986798
Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHHHHHH----HHHCCCHHE-----EECCCHHHHHCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 4432000001352201247898863322101----110020000-----1112012321436889899999999999999
Q gi|255764472|r 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIG----YAQAFSFKY-----SPRLGTPGSNMLEQVDENVKAERLLCLQKKL 398 (469)
Q Consensus 328 ~~~i~tdiIvGfPgETeedf~~Tl~~i~~~~----~~~~~vf~y-----S~r~gT~Aa~m~~qV~~~vk~~R~~~l~~~~ 398 (469)
++.|+- |=.||=.|+++...++|..++. ...+++-.| -.+| +.+.. .|-..= +..|.++-
T Consensus 257 dvlIaP---v~lPG~ND~E~~~iIe~A~~iGaGkk~p~lgiQkyipyk~GRkp-~~~k~----~~fkeF---YrwLrelE 325 (414)
T COG2100 257 DVLIAP---VWLPGVNDDEMPKIIEWAREIGAGKKWPPLGIQKYIPYKFGRKP-VIAKV----WPFKEF---YRWLRELE 325 (414)
T ss_pred CEEEEE---EECCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCC-CCCCC----CCHHHH---HHHHHHHH
T ss_conf 889831---44278681778999999998488877998530775540206886-30355----759999---99999999
Q ss_pred HHHHHH--------H---HHH------HCCCEEEEEEECCCCCCCEEEEECCCCCEEEECCC--CCCCCCEEEEEEEEEE
Q ss_conf 999999--------9---998------57978999984256808689999878628897388--7676888999999830
Q gi|255764472|r 399 REQQVS--------F---NDA------CVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSK--NHNIGDIIKVRITDVK 459 (469)
Q Consensus 399 ~~~~~~--------~---~~~------~iG~~~~Vlve~~~~~~~~~~G~t~~~~~V~~~~~--~~~~G~~v~V~I~~~~ 459 (469)
++.... | .+. -.|.++.+-+--.+.-.|...|.+-+-.-.+...+ ...+|+.++|+|+...
T Consensus 326 ketg~kpLilkP~~fG~~pRp~lp~PF~rGevv~aevV~~Gr~kGEmlavArdRvIav~~~~~~~~~vG~~vkvrIvr~k 405 (414)
T COG2100 326 KETGVKPLILKPGEFGMHPRPRLPKPFKRGEVVKAEVVLPGRLKGEMLAVARDRVIAVINSNEGALLVGDRVKVRIVRTK 405 (414)
T ss_pred HHHCCCCCCCCHHHCCCCCCCCCCCCCCCCCEEEEEEEECCEECCEEEEEECCCEEEEECCCHHHHCCCCEEEEEEEECC
T ss_conf 97398852168222377768779986336867999999436022257887506489971586043246755999999726
Q ss_pred CCEEEEEEE
Q ss_conf 873899994
Q gi|255764472|r 460 ISTLYGELV 468 (469)
Q Consensus 460 ~~~L~G~vi 468 (469)
..-.+|..+
T Consensus 406 hnI~Ia~p~ 414 (414)
T COG2100 406 HNIYIAVPV 414 (414)
T ss_pred CCEEEEEEC
T ss_conf 865985249
No 45
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=99.24 E-value=8.5e-11 Score=100.32 Aligned_cols=188 Identities=18% Similarity=0.260 Sum_probs=130.6
Q ss_pred EEEEE---CCCCCC-CCCCC-CH-----HH---------HHH-HHHHHHHHHHHHHHHHHHHCCCC----EEEEECCCCC
Q ss_conf 78741---233244-68111-00-----12---------213-76410058899988763101331----0587314541
Q gi|255764472|r 178 AFLTI---QEGCDK-FCTFC-VV-----PY---------TRG-IEISRSLSQVVDEARKLIDNGVC----EITLLGQNVN 233 (469)
Q Consensus 178 a~ikI---~~GC~~-~CsfC-~i-----p~---------~RG-~~rSr~~~~Iv~ei~~l~~~G~k----Ei~L~g~d~~ 233 (469)
|.|.| -.|||+ .|.|| .. |+ +|+ +.+--|-..+-..++.|..-|.. |+++-|
T Consensus 66 aVVaVmt~p~~CPHg~CvfCpgg~~~~spQSytg~ep~~~R~~~~~ydpY~q~~~Rl~qL~~igh~~~KvEliimG---- 141 (515)
T COG1243 66 AVVAVMTSPHGCPHGRCVFCPGGPDKDSPQSYTGEEPAALRAIKNRYDPYEQVRARLKQLETIGHTSDKVELIIMG---- 141 (515)
T ss_pred EEEEEECCCCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEC----
T ss_conf 6899843888999980775899777788855478884266777605791888888899999739986428999962----
Q ss_pred EEEECCCCCCC-----CCCCHHHHHHH----------CC--CCCCC---CCCCCCCCCCCCCHHHHHHCCCCCCCCCEEE
Q ss_conf 13411344431-----00021678862----------04--44300---1354421000100036652022111220133
Q gi|255764472|r 234 AWRGKGLDGEK-----CTFSDLLYSLS----------EI--KGLVR---LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHL 293 (469)
Q Consensus 234 ~Y~g~~~~~~~-----~~l~~Ll~~l~----------~i--~~~~r---iR~~s~~P~~~~~~li~~~~~~~~i~~~lhl 293 (469)
.++.+.. +-+...++.+. .. .+..| +++. .-|+.++++-++.|.+.+ +.-+.|
T Consensus 142 ----GTFta~~~~yqe~Fi~~~~~amn~f~~~le~a~~~ne~~~~r~vgitiE-TRPD~~~ee~ld~mlkyG--~TrVEL 214 (515)
T COG1243 142 ----GTFTALSLEYQEWFLKVALKAMNDFGYDLEEAQRKNETAELRCVGITIE-TRPDYIDEEHLDQMLKYG--VTRVEL 214 (515)
T ss_pred ----CCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCEEEEEEE-CCCCCCCHHHHHHHHHCC--CCEEEE
T ss_conf ----6566888789999999999865312204889887400023422679983-484100779999999638--838998
Q ss_pred EEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCHH-HHHHHHHHHHHH--HHHHHCCCHHEEEC
Q ss_conf 211145789987303334411467899987401344320000013522012-478988633221--01110020000111
Q gi|255764472|r 294 PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETD-DDFRATMDLVDK--IGYAQAFSFKYSPR 370 (469)
Q Consensus 294 piQSgs~~vLk~M~R~~~~e~~~~~i~~~r~~~p~~~i~tdiIvGfPgETe-edf~~Tl~~i~~--~~~~~~~vf~yS~r 370 (469)
++||-.|.||+++||+||.++..++...+|.+ ++.++.-+|.|.||-.. .|.+...+.++. .++|.+-++|----
T Consensus 215 GVQSiyd~Vl~~~~RGHtvedv~~a~rLlKd~--GfKv~~HiMpGLPgs~~erDl~~f~~~f~~p~f~PDmlKIYPtLVi 292 (515)
T COG1243 215 GVQSIYDDVLERTKRGHTVEDVVEATRLLKDA--GFKVGYHIMPGLPGSDFERDLESFREIFEDPRFRPDMLKIYPTLVI 292 (515)
T ss_pred EEEEHHHHHHHHHCCCCCHHHHHHHHHHHHHC--CCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEEEE
T ss_conf 32657999999833896199999999999851--8379999658999988677899999997188889875788402798
Q ss_pred CCHHHHHC
Q ss_conf 20123214
Q gi|255764472|r 371 LGTPGSNM 378 (469)
Q Consensus 371 ~gT~Aa~m 378 (469)
+||+-+.|
T Consensus 293 ~gT~Ly~m 300 (515)
T COG1243 293 EGTELYEM 300 (515)
T ss_pred CCCHHHHH
T ss_conf 78269999
No 46
>PRK08508 biotin synthase; Provisional
Probab=99.20 E-value=2.4e-10 Score=96.96 Aligned_cols=191 Identities=17% Similarity=0.205 Sum_probs=134.3
Q ss_pred EEEEE-CCCCCCCCCCCCHH-HHH-H--HHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCCCHHHH
Q ss_conf 78741-23324468111001-221-3--7641005889998876310133105873145411341134443100021678
Q gi|255764472|r 178 AFLTI-QEGCDKFCTFCVVP-YTR-G--IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252 (469)
Q Consensus 178 a~ikI-~~GC~~~CsfC~ip-~~R-G--~~rSr~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y~g~~~~~~~~~l~~Ll~ 252 (469)
+++.+ |-+|+..|.||..- ..+ + +++-.++++|++.++...+.|+..+.++. + |++.+ ...+..+++
T Consensus 8 si~n~KSG~C~edC~yCaQs~~~~t~i~~Y~l~~~eeIl~~A~~a~~~G~~rf~lv~----s--g~~~~--~~~~e~v~~ 79 (279)
T PRK08508 8 AISNISSGNCKEDCKYCTQSAHYKADIKRYKRKEIEQIVQEAKMARANGALGFCLVT----A--GRGLD--DKKLEYVAK 79 (279)
T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHCCCCEEEEEE----E--CCCCC--HHHHHHHHH
T ss_conf 887341379998786444817679998610789999999999999975997689998----2--36887--544999999
Q ss_pred HHHCCCC---CCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 8620444---3001354421000100036652022111220133211145789987303334411467899987401344
Q gi|255764472|r 253 SLSEIKG---LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329 (469)
Q Consensus 253 ~l~~i~~---~~riR~~s~~P~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~~~r~~~p~~ 329 (469)
.+.++.. ...+-. | .-.++++-...+++.+ + ...|.-+++ |++--..+--.|+.++=++.++.+|++ |+
T Consensus 80 ~v~~Ik~~~~~l~~c~-s--lG~l~~e~~~~LkeAG-v-drY~hNlET-s~~~y~~I~tThty~dRl~tl~~~k~a--Gl 151 (279)
T PRK08508 80 AAKAVKKEVPGLHLIA-C--NGMASVEQLKELKKAG-I-FSYNHNLET-SKEFFPKICTTHSWEERFQTCLNAKEA--GL 151 (279)
T ss_pred HHHHHHHCCCCEEEEE-E--CCCCCHHHHHHHHHCC-C-CEECCCCCC-CHHHHCCCCCCCCHHHHHHHHHHHHHC--CC
T ss_conf 9999863379935761-1--7857999999999839-7-123076676-768757658998889999999999981--99
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEECCCHHHHHCCCCCCHHHH
Q ss_conf 3200000135220124789886332210111002000011120123214368898999
Q gi|255764472|r 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 (469)
Q Consensus 330 ~i~tdiIvGfPgETeedf~~Tl~~i~~~~~~~~~vf~yS~r~gT~Aa~m~~qV~~~vk 387 (469)
.+.+-.|+|. |||+||..+.+-+++++.++.+-|-++-|.||||-. - +.+++...
T Consensus 152 ~vCsGgIiGl-GEt~edrve~a~~L~eL~~dsVPIN~liPi~GTPLe-~-~~l~~~e~ 206 (279)
T PRK08508 152 GLCSGGIFGL-GESWEDRISMLKSLASLSPHSTPINFFIPNPALPLD-T-PTLSADEA 206 (279)
T ss_pred EEECCCEEEC-CCCHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCC-C-CCCCHHHH
T ss_conf 4867854478-999899999999998389987515676589999888-8-99999999
No 47
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase; InterPro: IPR004558 This family represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. HemN catalyses the anaerobic transformation of coproporhyrinogen-III into protoporphyrinogen-IX during porphyrin biosynthesis. Several species, including Escherichia coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity, IPR004559 from INTERPRO. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterised protein.; GO: 0004109 coproporphyrinogen oxidase activity, 0006779 porphyrin biosynthetic process, 0005737 cytoplasm.
Probab=99.15 E-value=6.1e-10 Score=93.95 Aligned_cols=217 Identities=19% Similarity=0.279 Sum_probs=153.0
Q ss_pred CCCCCCCCC----CHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCEEEEECCCCCEEEECCCCC--CCCCCCHHHHHHHC
Q ss_conf 324468111----001221376410058899988763101--3310587314541134113444--31000216788620
Q gi|255764472|r 185 GCDKFCTFC----VVPYTRGIEISRSLSQVVDEARKLIDN--GVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSE 256 (469)
Q Consensus 185 GC~~~CsfC----~ip~~RG~~rSr~~~~Iv~ei~~l~~~--G~kEi~L~g~d~~~Y~g~~~~~--~~~~l~~Ll~~l~~ 256 (469)
=|...|=|| ||..-.+ -.-+-++.+.+|+..+... +-|+|.= ..| |.|.++ ++.-+..|.+.|.+
T Consensus 60 FC~~~CyFCgCn~I~t~~~~-~~~~YL~~l~ke~~l~~~~~d~~R~V~Q-----LHw-GGGTP~YL~~~Q~~~l~~~i~~ 132 (462)
T TIGR00538 60 FCEKACYFCGCNVIITRRKE-KKDPYLEALKKEIALVAPLLDKDREVAQ-----LHW-GGGTPTYLSPEQIEELMKEIRE 132 (462)
T ss_pred HHHCCCCCCCCCEEECCCCC-CHHHHHHHHHHHHHHHHHHHHCCCCEEE-----EEC-CCCCCCCCCHHHHHHHHHHHHH
T ss_conf 34121320146611305565-1016799999999998777524894688-----762-7898333788999999999998
Q ss_pred CCC-C-CCCCCCC-CCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCC-CCC
Q ss_conf 444-3-0013544-21000100036652022111220133211145789987303334411467899987401344-320
Q gi|255764472|r 257 IKG-L-VRLRYTT-SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI-AIS 332 (469)
Q Consensus 257 i~~-~-~riR~~s-~~P~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~~~r~~~p~~-~i~ 332 (469)
.-. . .-+-+|- ++|..+++|.|.++.+.+ ++=|=++||=-+.+|=++.||==.-|-+.+.++.+|++ |+ ++.
T Consensus 133 ~F~nf~~daEiSiEidPR~~~~e~~~~L~~~G--FNRlS~GvQDfd~~VQ~avnR~QP~e~i~~~~~~~R~~--Gf~SiN 208 (462)
T TIGR00538 133 AFPNFSEDAEISIEIDPRYLTKEVIKALRDEG--FNRLSFGVQDFDKEVQQAVNRIQPEEMIFELMEKAREA--GFESIN 208 (462)
T ss_pred HHHHHCCCCEEEEEECCCCCCHHHHHHHHHCC--CCEEECCEECCCHHHHHHHCCCCCHHHHHHHHHHHHHC--CCCEEE
T ss_conf 73201158447765237413788999999758--96642352107855544431348689999999999866--982787
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEECCCHHHH--HCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 00001352201247898863322101110020000111201232--1436-88989999999999999999999999985
Q gi|255764472|r 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS--NMLE-QVDENVKAERLLCLQKKLREQQVSFNDAC 409 (469)
Q Consensus 333 tdiIvGfPgETeedf~~Tl~~i~~~~~~~~~vf~yS~r~gT~Aa--~m~~-qV~~~vk~~R~~~l~~~~~~~~~~~~~~~ 409 (469)
.|+|.|.|-.|.|.|+.||+.+=++.||++-||-|-.-|--.+. +|++ .+|+ ..+.++.|.++...+..+ +-.|
T Consensus 209 ~DLIYGLP~Qt~esF~~Tl~~v~~LnPDRlAvFnyAyvP~vk~~q~k~~~~~LPS--~~~KL~Il~~~I~~L~~~-gY~f 285 (462)
T TIGR00538 209 LDLIYGLPKQTKESFEKTLEKVAELNPDRLAVFNYAYVPWVKPAQRKIPEEALPS--AEEKLEILEETIAFLTEA-GYVF 285 (462)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHCCCCEEHHHHHHHHCCHHHHHCCCCHHCCCC--HHHHHHHHHHHHHHHHHC-CCEE
T ss_conf 4201388887867899999998531877001210222101577850276200588--789999999999999757-9758
Q ss_pred CCCEEE
Q ss_conf 797899
Q gi|255764472|r 410 VGQIIE 415 (469)
Q Consensus 410 iG~~~~ 415 (469)
||-..=
T Consensus 286 IGMDHF 291 (462)
T TIGR00538 286 IGMDHF 291 (462)
T ss_pred ECCCCC
T ss_conf 514457
No 48
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=99.07 E-value=3.9e-09 Score=87.92 Aligned_cols=190 Identities=18% Similarity=0.266 Sum_probs=131.5
Q ss_pred EEEEEECCCC-CCCCCCCCHHHHH----H--HHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCCCH
Q ss_conf 5787412332-4468111001221----3--7641005889998876310133105873145411341134443100021
Q gi|255764472|r 177 TAFLTIQEGC-DKFCTFCVVPYTR----G--IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249 (469)
Q Consensus 177 ~a~ikI~~GC-~~~CsfC~ip~~R----G--~~rSr~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y~g~~~~~~~~~l~~ 249 (469)
..+|.|..|| +-.|.||. +.. | +..-.++++|+++++...+.|+....+. ++|++++ -+...+.+
T Consensus 51 ~~ii~iktg~c~edC~yC~--qS~~~~~~~~~~~l~~~eeIle~Ak~ak~~Ga~r~c~~----aagr~~~--~~~~~i~~ 122 (335)
T COG0502 51 STLISIKTGCCPEDCAYCS--QSARYKTGVKARKLMEVEEILEAAKKAKAAGATRFCMG----AAGRGPG--RDMEEVVE 122 (335)
T ss_pred EEEEEEECCCCCCCCCCCC--CCCCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEE----EECCCCC--CCHHHHHH
T ss_conf 8888733488898898760--01047679823312899999999999997499507998----7316777--44899999
Q ss_pred HHHHHHCCCCCC-CCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 678862044430-0135442100010003665202211122013321114578998730333441146789998740134
Q gi|255764472|r 250 LLYSLSEIKGLV-RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 (469)
Q Consensus 250 Ll~~l~~i~~~~-riR~~s~~P~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~~~r~~~p~ 328 (469)
..+.+.+.-++. .+-+++ ++++-.+.+++.+ +- +...-+++ |++--+..-=.++.++-++.++.+|++ |
T Consensus 123 ~v~~Vk~~~~le~c~slG~-----l~~eq~~~L~~aG-vd-~ynhNLeT-s~~~y~~I~tt~t~edR~~tl~~vk~~--G 192 (335)
T COG0502 123 AIKAVKEELGLEVCASLGM-----LTEEQAEKLADAG-VD-RYNHNLET-SPEFYENIITTRTYEDRLNTLENVREA--G 192 (335)
T ss_pred HHHHHHHHCCCHHHHCCCC-----CCHHHHHHHHHCC-HH-HEECCCCC-CHHHHCCCCCCCCHHHHHHHHHHHHHC--C
T ss_conf 9999998469286402587-----9999999999718-11-33035556-978875657898888999999999980--9
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHHH-HHHCCCHHEEECCCHHHHHCCCCCCHHH
Q ss_conf 432000001352201247898863322101-1100200001112012321436889899
Q gi|255764472|r 329 IAISSDFIVGFPGETDDDFRATMDLVDKIG-YAQAFSFKYSPRLGTPGSNMLEQVDENV 386 (469)
Q Consensus 329 ~~i~tdiIvGfPgETeedf~~Tl~~i~~~~-~~~~~vf~yS~r~gT~Aa~m~~qV~~~v 386 (469)
+.+.+..|+|. |||.+|--+.+.++.+.. ++.+-+..+-|.||||-+..+ .++.-.
T Consensus 193 i~vcsGgI~Gl-GEs~eDri~~l~~L~~l~~pdsVPIn~l~P~~GTPle~~~-~~~~~e 249 (335)
T COG0502 193 IEVCSGGIVGL-GETVEDRAELLLELANLPTPDSVPINFLNPIPGTPLENAK-PLDPFE 249 (335)
T ss_pred CCCCCCEEECC-CCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCC-CCCHHH
T ss_conf 85045127618-9988899999999971899885423210379998666589-999899
No 49
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase; InterPro: IPR004559 Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins called HemN (IPR004558 from INTERPRO). This family contains a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including Escherichia coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the Escherichia coli hemN family. The member of this family from Bacillus subtilis was shown to complement a hemF/hemN double mutant of Salmonella typhimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize haem de novo. ; GO: 0004109 coproporphyrinogen oxidase activity, 0006779 porphyrin biosynthetic process, 0005737 cytoplasm.
Probab=98.99 E-value=4.4e-09 Score=87.56 Aligned_cols=199 Identities=16% Similarity=0.248 Sum_probs=136.6
Q ss_pred EEEEECCCCCCCCCCCCHHHHHHHHHH-HHHHHH----HHHHHHHHHC-C--CCEEEEECCCC-CEEEECCCCC--CCCC
Q ss_conf 787412332446811100122137641-005889----9988763101-3--31058731454-1134113444--3100
Q gi|255764472|r 178 AFLTIQEGCDKFCTFCVVPYTRGIEIS-RSLSQV----VDEARKLIDN-G--VCEITLLGQNV-NAWRGKGLDG--EKCT 246 (469)
Q Consensus 178 a~ikI~~GC~~~CsfC~ip~~RG~~rS-r~~~~I----v~ei~~l~~~-G--~kEi~L~g~d~-~~Y~g~~~~~--~~~~ 246 (469)
+||-| -=|-+.|.||.-=. =..+| .|.++= ..+.+.-+.+ + +.. .++ +.|-|.|.+. ....
T Consensus 3 lYIHI-PfCe~kC~YCdFNs--y~~ksd~p~~eY~~aL~~dl~~~l~~t~dsiqQ-----~~l~siFIGGGTP~~lS~e~ 74 (371)
T TIGR00539 3 LYIHI-PFCEQKCGYCDFNS--YAQKSDIPKEEYLQALLQDLKAALAKTDDSIQQ-----EDLKSIFIGGGTPSLLSAEA 74 (371)
T ss_pred EEEEC-CHHCCCCCCCCCCC--HHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCC-----CCCCEEEECCCCCCHHHHHH
T ss_conf 35556-02237588865332--455427856799999999999999860443236-----76556885688741468999
Q ss_pred CCHHHHHHHCCCC-C-CCCCCC-CCCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 0216788620444-3-001354-421000100036652022111220133211145789987303334411467899987
Q gi|255764472|r 247 FSDLLYSLSEIKG-L-VRLRYT-TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 (469)
Q Consensus 247 l~~Ll~~l~~i~~-~-~riR~~-s~~P~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~~~r 323 (469)
|..|++.|.+.-. . .-+-+. -.||..++.+-+.-+++.+ |. -|=++|||-.|.-|.+++|-|+..++.-+|+.+|
T Consensus 75 ~~~l~~~I~~~~~P~sd~~Eit~eANP~~~~ae~~kglk~aG-in-RlS~GvQsF~dDkL~~lgR~H~~k~~~~a~e~a~ 152 (371)
T TIGR00539 75 LKKLLEEIKKQLKPLSDDIEITVEANPDLVEAEKLKGLKEAG-IN-RLSLGVQSFEDDKLEKLGRVHKAKDVASAVELAK 152 (371)
T ss_pred HHHHHHHHHHHCCCCCCCCCEEECCCCCHHHHHHHHHHHHCC-EE-EEECCCCCCHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 999999987521743102111110782125698863676557-02-3321334541557888642113334667999998
Q ss_pred HHCCCC-CCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEECCCHHHHHCCCC----CCHHHHH
Q ss_conf 401344-3200000135220124789886332210111002000011120123214368----8989999
Q gi|255764472|r 324 SVRPDI-AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQ----VDENVKA 388 (469)
Q Consensus 324 ~~~p~~-~i~tdiIvGfPgETeedf~~Tl~~i~~~~~~~~~vf~yS~r~gT~Aa~m~~q----V~~~vk~ 388 (469)
+. |+ .|+-|+|.|.|+.|++..++.++...++.++++.++.-+-+|.|--+....+ .|++...
T Consensus 153 ~s--G~enislDL~~glP~qtl~~l~~~l~~A~eL~~~H~S~Y~L~vEpnT~f~~~~~KGrlhlP~~~~~ 220 (371)
T TIGR00539 153 KS--GLENISLDLMYGLPLQTLEELKEELKLALELDAEHLSVYALIVEPNTVFEKRAKKGRLHLPDDDAL 220 (371)
T ss_pred HC--CCCCCCHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHCCCCCCCCCCCCHHH
T ss_conf 71--752000554407861348999999865531784511233234223304542688887894670345
No 50
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A; InterPro: IPR013483 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cisdithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism , . In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which coverts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner . MoCF is the active co-factor in eukaryotic and some prokaryotic molybdoenzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdoenzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF . Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 () of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) . This entry represents the bacterial form of MoaA (molybdenum cofactor biosynthesis protein A). The MoaA protein is a member of the wider S-adenosylmethionine(SAM)-dependent enzyme family which catalyze the formation of protein and/or substrate radicals by reductive cleavage of SAM via a [4Fe-4S] cluster. Monomeric and homodimeric forms of MoaA have been observed in vivo, and it is not clear what the physiologically relevant form of the enzyme is . The core of each monomer consists of an incomplete TIM barrel, formed by the N-terminal region of the protein, containing a [4Fe-4S] cluster. The C-terminal region of the protein, which also contains a [4Fe-4S] cluster consists of a beta-sheet covering the lateral opening of the barrel, an extended loop and three alpha helices. The N-terminal [4Fe-4S] cluster is coordinated with 3 cysteines and an exchangeable SAM molecule, while the C-terminal [4Fe-4S], also coordinated with 3 cysteines, is the binding and activation site for GTP .; GO: 0046872 metal ion binding, 0006777 Mo-molybdopterin cofactor biosynthetic process.
Probab=98.86 E-value=1.3e-07 Score=76.65 Aligned_cols=199 Identities=17% Similarity=0.242 Sum_probs=141.1
Q ss_pred CEEEEE--ECCCCCCCCCCCCHHHH-------HHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCC
Q ss_conf 257874--12332446811100122-------137641005889998876310133105873145411341134443100
Q gi|255764472|r 176 VTAFLT--IQEGCDKFCTFCVVPYT-------RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCT 246 (469)
Q Consensus 176 ~~a~ik--I~~GC~~~CsfC~ip~~-------RG~~rSr~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y~g~~~~~~~~~ 246 (469)
..-||. |.|=||.+|+||.=+.. -.+..--+.|+|.+=++.+++.|++.|.||| |.=+ -+..
T Consensus 8 ~~~YLRiSvTDRCNlRC~YCMP~~~FG~~~~f~~~~~~Lt~eEi~rl~~~~v~~Gv~KvRlTG-------GEPL--lR~~ 78 (346)
T TIGR02666 8 RIDYLRISVTDRCNLRCVYCMPEEGFGEGLDFLPKEELLTFEEIERLVRAFVGLGVRKVRLTG-------GEPL--LRKD 78 (346)
T ss_pred EEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEC-------CCCC--CCCC
T ss_conf 323577876164787246668865678876678755668989999999999974971687527-------7744--1367
Q ss_pred CCHHHHHHHCCCC--CCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCC-CCCCCHHHHHHHHHH
Q ss_conf 0216788620444--3001354421000100036652022111220133211145789987303-334411467899987
Q gi|255764472|r 247 FSDLLYSLSEIKG--LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR-RHTAYEYRQIIDRIR 323 (469)
Q Consensus 247 l~~Ll~~l~~i~~--~~riR~~s~~P~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R-~~~~e~~~~~i~~~r 323 (469)
+.+|+++|.+++| +..|.+++ |-..+ +..++.+++.+ .+-+-+||-|-++..-+.|.| ....+++++-|+.+.
T Consensus 79 l~~lv~~~~~~~g~~~~di~lTT-NG~~L-~~~a~~L~eAG--L~rvNvSLDsLd~~~F~~It~~~~~l~~Vl~Gi~aA~ 154 (346)
T TIGR02666 79 LVELVARLAALPGIEIEDIALTT-NGLLL-ERHAKDLKEAG--LKRVNVSLDSLDPERFAKITRRGGRLEQVLAGIDAAL 154 (346)
T ss_pred HHHHHHHHHHCCCCCCCEEEECC-CHHHH-HHHHHHHHHCC--CCCEEEEEECCCHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 58999999842785433554100-52235-88999999718--8803654014888999998578998889999999999
Q ss_pred HH-CCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEECCCH-HHHHCCCCCCHHHHHHHH
Q ss_conf 40-134432000001352201247898863322101110020000111201-232143688989999999
Q gi|255764472|r 324 SV-RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT-PGSNMLEQVDENVKAERL 391 (469)
Q Consensus 324 ~~-~p~~~i~tdiIvGfPgETeedf~~Tl~~i~~~~~~~~~vf~yS~r~gT-~Aa~m~~qV~~~vk~~R~ 391 (469)
++ ++-+-+.|=+| .|=.+++....++|.++-+++-=+| -|.|--.- ..+.....++.....+|.
T Consensus 155 ~~Gl~~vKlN~V~~---~G~Nd~Ei~~l~~~~~~~~~~lRFI-E~MP~G~~~~~~~~~~~~~~~~~l~~~ 220 (346)
T TIGR02666 155 EAGLKPVKLNTVVL---RGVNDDEIVDLAEFAKERGVTLRFI-ELMPLGEGGNGWRGKEFVSADEILERL 220 (346)
T ss_pred HCCCCCEEEEEEEC---CCCCHHHHHHHHHHHHHCCCEEEEE-EECCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 65998314766762---7889778999999997579607887-515467630000003453589999999
No 51
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=98.86 E-value=1.5e-07 Score=76.17 Aligned_cols=194 Identities=20% Similarity=0.274 Sum_probs=134.1
Q ss_pred EEECCCCCCCCCCCCHHHHH-H-----HHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCCCHHHHH
Q ss_conf 74123324468111001221-3-----76410058899988763101331058731454113411344431000216788
Q gi|255764472|r 180 LTIQEGCDKFCTFCVVPYTR-G-----IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253 (469)
Q Consensus 180 ikI~~GC~~~CsfC~ip~~R-G-----~~rSr~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y~g~~~~~~~~~l~~Ll~~ 253 (469)
|.|.+=||++|.||. |... + +..--+.++|..=++.+++.|++.|.||| |.-+ -+..+.+|++.
T Consensus 21 iSvTdrCN~rC~YCm-pe~~~~~~~~~~~~~Ls~eEi~~i~~~~~~lGi~kiRlTG-------GEPL--lR~di~~li~~ 90 (334)
T PRK00164 21 LSVTDRCNFRCTYCM-PEGYFGLTFLPKEELLSLEEIERLVRAFAALGVRKIRLTG-------GEPL--LRKDLEDIIAR 90 (334)
T ss_pred EEEECCCCCCCCCCC-CCCCCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEECC-------CCCC--CCCCHHHHHHH
T ss_conf 885044047387789-9777787888734229999999999999970962798607-------8843--23578999999
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHH-CCCCCCC
Q ss_conf 620444300135442100010003665202211122013321114578998730333441146789998740-1344320
Q gi|255764472|r 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV-RPDIAIS 332 (469)
Q Consensus 254 l~~i~~~~riR~~s~~P~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~~~r~~-~p~~~i~ 332 (469)
|.+++|+..+-+++ |-. +-++.++.+++.+ ...+.+++-|-++..-+.|-|+...+++++-|+.+.++ +.-+-+.
T Consensus 91 l~~~~gi~~v~lTT-NG~-lL~~~a~~Lk~aG--L~riNISLDsLd~~~f~~IT~~~~l~~Vl~gI~~A~~~G~~~vKiN 166 (334)
T PRK00164 91 LAALPGIRDLALTT-NGY-LLARRAAALKDAG--LTRVNVSLDSLDPERFKAITGRDRLDQVLAGIDAALAAGLEPVKVN 166 (334)
T ss_pred HHHCCCCCCEEEEC-CHH-HHHHHHHHHHHCC--CCEEEEEEEECCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 86327975178844-488-9999999999859--9869971131899999998489975999999999995898761689
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEECCCHHHHHCCCCCCHHHHHHHH
Q ss_conf 00001352201247898863322101110020000111201232143688989999999
Q gi|255764472|r 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERL 391 (469)
Q Consensus 333 tdiIvGfPgETeedf~~Tl~~i~~~~~~~~~vf~yS~r~gT~Aa~m~~qV~~~vk~~R~ 391 (469)
+=+|=|+ ++++..+.++|.++.+++.=++ -|.|--.+........++.+...++.
T Consensus 167 ~V~~~g~---N~dEi~~li~~~~~~~i~vRFI-E~Mp~g~~~~~~~~~~~~~~~i~~~l 221 (334)
T PRK00164 167 AVLMKGV---NDDEIPDLLRWAKDRGIQLRFI-ELMPTGEGNEWFRDHHLSGAEIRARL 221 (334)
T ss_pred EEEECCC---CHHHHHHHHHHHHHCCCEEEEE-EEECCCCCCCHHHCCCCCHHHHHHHH
T ss_conf 9963798---9899999999996469659999-98216777643530654899999999
No 52
>PRK06245 cofG FO synthase subunit 1; Reviewed
Probab=98.85 E-value=3.3e-08 Score=81.02 Aligned_cols=191 Identities=18% Similarity=0.252 Sum_probs=117.6
Q ss_pred EEEEECCCCCCCCCCCCHHHHHH--HHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCE--EE-ECCCCCCCCCCCHHHH
Q ss_conf 78741233244681110012213--7641005889998876310133105873145411--34-1134443100021678
Q gi|255764472|r 178 AFLTIQEGCDKFCTFCVVPYTRG--IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA--WR-GKGLDGEKCTFSDLLY 252 (469)
Q Consensus 178 a~ikI~~GC~~~CsfC~ip~~RG--~~rSr~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~--Y~-g~~~~~~~~~l~~Ll~ 252 (469)
.+|+...=|...|+||.- .|+ .....++++|++.++...+.|++|+.++|=+.-. |. -.++ ....+...+.
T Consensus 14 ~~In~TNiC~~~C~fCaF--~~~~~~a~~ls~eev~~~~~ea~~~G~tEvl~~gG~~P~~~~~~~~~l--~~~~~~~~~~ 89 (336)
T PRK06245 14 VFIPLTYECRNRCGYCTF--RPDPGEASLLSPEEVREILERGQDAGCTEALFTFGEVPDESEEIREQL--AEPGYSSWLE 89 (336)
T ss_pred CCCCCCCCCCCCCCCCCC--CCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHH--HHHCCCHHHH
T ss_conf 261677540268825867--468875687799999999999997698399980578866368999999--9707550778
Q ss_pred HHHCCCCCCCCCCC---CCCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCC---CCCHHHHHHHHHHHHC
Q ss_conf 86204443001354---42100010003665202211122013321114578998730333---4411467899987401
Q gi|255764472|r 253 SLSEIKGLVRLRYT---TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH---TAYEYRQIIDRIRSVR 326 (469)
Q Consensus 253 ~l~~i~~~~riR~~---s~~P~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R~~---~~e~~~~~i~~~r~~~ 326 (469)
.+.++.... +..+ -.++..++.+-+..+++ +...+.+.+++.++++....++.. ..++.++.++.+.+.
T Consensus 90 ~~~~~~~~~-le~gllph~n~G~ls~~el~~Lk~---v~asmG~mlE~~se~l~~~~h~~~P~K~~~~rL~~ie~Ah~l- 164 (336)
T PRK06245 90 YLYDLCELA-LETGLLPHTNAGILSRAEMEALKP---VNASMGLMLEQTSPRLLETVHRHSPGKDPELRLETIEWAGEL- 164 (336)
T ss_pred HHHHHHHHH-HHHCCCCCCCCCCCCHHHHHHHHC---CCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHC-
T ss_conf 899985888-763655223667678999998753---597667571235689887630448987889999999999983-
Q ss_pred CCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCC-----HHEEECCCHHHHHCC
Q ss_conf 34432000001352201247898863322101110020-----000111201232143
Q gi|255764472|r 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS-----FKYSPRLGTPGSNML 379 (469)
Q Consensus 327 p~~~i~tdiIvGfPgETeedf~~Tl~~i~~~~~~~~~v-----f~yS~r~gT~Aa~m~ 379 (469)
++-++|++++|. |||.+|..+.|.-+++++=.+-|+ .+|.|.+||+-...+
T Consensus 165 -gIptTatmL~G~-gET~eeRi~hL~~IR~lq~~tGgfqefI~~~F~p~~~t~m~~~~ 220 (336)
T PRK06245 165 -KIPFTTGLLIGI-GETWEDRIESLEAIAELHERYGHIQEVIIQNFRPKPGIPMENHP 220 (336)
T ss_pred -CCCCEEEEEEEC-CCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCC
T ss_conf -997220245206-69999999999999998863497579950687789875334699
No 53
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=98.84 E-value=1.7e-07 Score=75.65 Aligned_cols=194 Identities=18% Similarity=0.268 Sum_probs=134.2
Q ss_pred EEECCCCCCCCCCCCHHHHH---HHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCCCHHHHHHHC
Q ss_conf 74123324468111001221---376410058899988763101331058731454113411344431000216788620
Q gi|255764472|r 180 LTIQEGCDKFCTFCVVPYTR---GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256 (469)
Q Consensus 180 ikI~~GC~~~CsfC~ip~~R---G~~rSr~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y~g~~~~~~~~~l~~Ll~~l~~ 256 (469)
|.|.+=||++|.||. |..- .+..--+.++|.+=++.+++.|++.|.||| |.-+ -...+.+|++.+.+
T Consensus 18 iSvTdrCN~rC~YCm-peg~~~~~~~~~Ls~eEi~~l~~~~~~~Gi~kvRlTG-------GEPL--lR~dl~~li~~l~~ 87 (329)
T PRK13361 18 LSVTDRCDFRCVYCM-SEDPCFLPRDQVLTLEELAWLAQAFTELGVRKIRLTG-------GEPL--VRTGCDQLVARLGK 87 (329)
T ss_pred EEEECCCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEC-------CCCC--CCCCHHHHHHHHHH
T ss_conf 885244058387879-9899878702468999999999999972952899627-------8822--35688999999861
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHH-CCCCCCCEEE
Q ss_conf 444300135442100010003665202211122013321114578998730333441146789998740-1344320000
Q gi|255764472|r 257 IKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV-RPDIAISSDF 335 (469)
Q Consensus 257 i~~~~riR~~s~~P~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~~~r~~-~p~~~i~tdi 335 (469)
++|+.-+-+++ |-. +-+..++.+++.+ ...+.+++-|-++..-+.+-|+...+++++-|+.+.++ +.-+-+.+=+
T Consensus 88 ~~gi~~islTT-NG~-lL~~~a~~Lk~aG--L~rvNISLDsLd~~~f~~ITr~~~l~~Vl~gI~aA~~~G~~~VKiN~V~ 163 (329)
T PRK13361 88 LPGLEELSMTT-NGS-RLARFAAELADAG--LKRLNISLDTLNPDLFAALTRNGRLERVIAGIDAAKAAGFERIKLNAVI 163 (329)
T ss_pred CCCCCEEEEEC-CHH-HHHHHHHHHHHCC--CCEEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEEEEE
T ss_conf 79977189966-477-6899999999779--9869973577999999977289976999999999997799738899998
Q ss_pred ECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEECCCHHHHHCCCCCCHHHHHHHH
Q ss_conf 01352201247898863322101110020000111201232143688989999999
Q gi|255764472|r 336 IVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERL 391 (469)
Q Consensus 336 IvGfPgETeedf~~Tl~~i~~~~~~~~~vf~yS~r~gT~Aa~m~~qV~~~vk~~R~ 391 (469)
+ .|-++++..+.++|.++.+++.=++ -|-|--+.........++.+...++.
T Consensus 164 l---rg~NddEi~~l~~~~~~~~~~vRFI-E~MP~g~~~~~~~~~~~~~~ei~~~i 215 (329)
T PRK13361 164 L---RGQNDDEVLDLVEFCRERGLDIAFI-EEMPLGEIDERKRARHCSSDEVRAII 215 (329)
T ss_pred E---CCCCHHHHHHHHHHHHHCCCCEEEE-EEEECCCCCCCHHCCCCCHHHHHHHH
T ss_conf 3---6878889999999997489836988-74326875540002656799999999
No 54
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=98.82 E-value=3.8e-08 Score=80.51 Aligned_cols=213 Identities=20% Similarity=0.289 Sum_probs=141.1
Q ss_pred CCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCCCHHHHH
Q ss_conf 77257874123324468111001221376410058899988763101331058731454113411344431000216788
Q gi|255764472|r 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253 (469)
Q Consensus 174 ~~~~a~ikI~~GC~~~CsfC~ip~~RG~~rSr~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y~g~~~~~~~~~l~~Ll~~ 253 (469)
+++-.|.--.+=|-++|.||.|...| .---.+++--+=++....-|.+-+++|++|=-+- -|+....|++-+++
T Consensus 68 ~~tATFmImG~~CTR~C~FC~V~~g~--P~~lD~~EP~rvAeaV~~mgLkyVViTsVdRDDL----~DGGA~hfa~~i~~ 141 (306)
T COG0320 68 RGTATFMILGDICTRRCRFCDVKTGR--PNPLDPDEPERVAEAVKDMGLKYVVITSVDRDDL----PDGGAQHFAECIRA 141 (306)
T ss_pred CCCEEEEECCCHHCCCCCCCCCCCCC--CCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCC----CCCCHHHHHHHHHH
T ss_conf 78337764151322678853147899--9999974278999999983898699975315666----56456899999999
Q ss_pred HHCCCCCCCCCCCCCCCCCC-CCHHHHHHCCC-CCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf 62044430013544210001-00036652022-11122013321114578998730333441146789998740134432
Q gi|255764472|r 254 LSEIKGLVRLRYTTSHPRDM-SDCLIKAHGDL-DVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331 (469)
Q Consensus 254 l~~i~~~~riR~~s~~P~~~-~~~li~~~~~~-~~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~~~r~~~p~~~i 331 (469)
|.+....-.|-+. -|+.. .+..++.+.++ +-++.|= ++ -=++.-+..+++.+.+.-+++++.+++..|++.-
T Consensus 142 Ir~~~P~t~iEvL--~PDF~G~~~al~~v~~~~pdV~nHN---vE-TVprL~~~VRp~A~Y~~SL~~L~~~k~~~P~i~T 215 (306)
T COG0320 142 IRELNPQTTIEVL--TPDFRGNDDALEIVADAGPDVFNHN---VE-TVPRLYPRVRPGATYERSLSLLERAKELGPDIPT 215 (306)
T ss_pred HHHHCCCCEEEEE--CCCCCCCHHHHHHHHHCCCCHHHCC---CC-CCHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf 9963999648983--8654678999999983696110045---20-0001142568987688899999999985898631
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEECCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0000013522012478988633221011100200001112012321436889899999999999999999999
Q gi|255764472|r 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVS 404 (469)
Q Consensus 332 ~tdiIvGfPgETeedf~~Tl~~i~~~~~~~~~vf~yS~r~gT~Aa~m~~qV~~~vk~~R~~~l~~~~~~~~~~ 404 (469)
-+.+|+|+ |||+++..++|+=+++...|.+.+-+|- ||.- -.+ .|-.-+.-+-..++.+.+.+..+.
T Consensus 216 KSgiMlGL-GEt~~Ev~e~m~DLr~~gvdilTiGQYl-qPS~--~Hl--pV~ryv~PeeF~~~~~~a~~~GF~ 282 (306)
T COG0320 216 KSGLMVGL-GETDEEVIEVMDDLRSAGVDILTIGQYL-QPSR--KHL--PVQRYVTPEEFDELEEVAEEMGFL 282 (306)
T ss_pred CCCEEEEC-CCCHHHHHHHHHHHHHCCCCEEEECCCC-CCCC--CCC--CCEECCCHHHHHHHHHHHHHCCCH
T ss_conf 12135505-7768999999999998599899730014-7762--458--833211889999999999974606
No 55
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=98.81 E-value=3.1e-08 Score=81.20 Aligned_cols=189 Identities=15% Similarity=0.183 Sum_probs=118.6
Q ss_pred EEEEECCCCCCCCCCCCHHHHHHH--HHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCCCHHHHHHH
Q ss_conf 787412332446811100122137--641005889998876310133105873145411341134443100021678862
Q gi|255764472|r 178 AFLTIQEGCDKFCTFCVVPYTRGI--EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255 (469)
Q Consensus 178 a~ikI~~GC~~~CsfC~ip~~RG~--~rSr~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y~g~~~~~~~~~l~~Ll~~l~ 255 (469)
.+|+...=|...|+||.-..-.|. ....++++|++.++...+.|++|+.++|=+ .-+.....+.++++.+.
T Consensus 41 ~~In~TNiC~~~C~fCaF~r~p~~~~ay~lt~eei~~~~~~a~~~G~~Ei~~~gG~-------~Pel~~~~y~e~~r~ik 113 (343)
T TIGR03551 41 RNINFTNVCYGGCGFCAFRKRKGDADAYLLSLEEIAERAAEAWKAGATEVCIQGGI-------HPDLDGDFYLDILRAVK 113 (343)
T ss_pred CCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCC-------CCCCCHHHHHHHHHHHH
T ss_conf 06255268747897677866899986600799999999999997699689982586-------87888889999999998
Q ss_pred CCCCCCCCCCCC-C-------CCCCCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCC-CCCCCHHHHHHHHHHHHC
Q ss_conf 044430013544-2-------1000100036652022111220133211145789987303-334411467899987401
Q gi|255764472|r 256 EIKGLVRLRYTT-S-------HPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR-RHTAYEYRQIIDRIRSVR 326 (469)
Q Consensus 256 ~i~~~~riR~~s-~-------~P~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R-~~~~e~~~~~i~~~r~~~ 326 (469)
+......++-.| . .......+.+..+++.+ +-...+-+.+--+++|-+..-. +.+.+++++.++.+.+.
T Consensus 114 ~~~p~~~i~a~s~~Ei~~~a~~~g~~~~e~l~~Lk~AG-l~s~pg~~aEil~~~vr~~i~P~K~~~~~wl~~~~~Ah~l- 191 (343)
T TIGR03551 114 EEVPGMHIHAFSPMEVYYGARNSGLSVEEALKRLKEAG-LDSMPGTAAEILDDEVRKVICPDKLSTAEWIEIIKTAHKL- 191 (343)
T ss_pred HHCCCCEEEECCHHHHHHHHHHCCCCHHHHHHHHHHCC-CCCCCCCCHHHCCHHHHHCCCCCCCCHHHHHHHHHHHHHC-
T ss_conf 74883010227899999999865999999999999758-7767886513214012414696989999999999999985-
Q ss_pred CCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEEC----CCHHHHH
Q ss_conf 34432000001352201247898863322101110020000111----2012321
Q gi|255764472|r 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR----LGTPGSN 377 (469)
Q Consensus 327 p~~~i~tdiIvGfPgETeedf~~Tl~~i~~~~~~~~~vf~yS~r----~gT~Aa~ 377 (469)
++-.++++++|+ |||.||.-+.|..+++++-...|+-.|-|- ++||-.+
T Consensus 192 -Gi~ttatml~G~-gEt~eerv~hL~~lR~lqd~tggf~~fIp~~f~p~~t~l~~ 244 (343)
T TIGR03551 192 -GIPTTATIMYGH-VETPEHWVDHLLILREIQEETGGFTEFVPLPFVHYNAPLYL 244 (343)
T ss_pred -CCCCCCCEEECC-CCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHH
T ss_conf -997202234278-89999999999999986201388269981365667880444
No 56
>PRK05481 lipoyl synthase; Provisional
Probab=98.78 E-value=3.3e-08 Score=81.02 Aligned_cols=209 Identities=18% Similarity=0.266 Sum_probs=134.4
Q ss_pred CCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCC-CCCCCCCCHHHH
Q ss_conf 7725787412332446811100122137641005889998876310133105873145411341134-443100021678
Q gi|255764472|r 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL-DGEKCTFSDLLY 252 (469)
Q Consensus 174 ~~~~a~ikI~~GC~~~CsfC~ip~~RG~~rSr~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y~g~~~-~~~~~~l~~Ll~ 252 (469)
+++-.|.=-.+-|-+.|.||.|...+ ..-..+++-.+=++.....|.+.+|+|++|= + |+ |+....|++-++
T Consensus 50 ~gTATFMIlG~~CTR~C~FC~V~tG~--P~~~D~~EP~~vA~av~~m~Lk~vViTSV~R----D-DL~DgGA~hfa~~I~ 122 (289)
T PRK05481 50 HGTATFMILGDICTRRCPFCDVATGR--PLPLDPDEPERVAEAVARMGLKYVVITSVDR----D-DLPDGGAQHFAETIR 122 (289)
T ss_pred CCCCEEEECCCCCCCCCCCCCCCCCC--CCCCCCHHHHHHHHHHHHHCCCEEEEEEECC----C-CCCCCCHHHHHHHHH
T ss_conf 98506776578765788774078899--8988703079999999982897699963416----6-665655499999999
Q ss_pred HHHCCCCCCCCCCCCCCCCCCC--CHHHHHHCC-CCCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 8620444300135442100010--003665202-2111220133211145789987303334411467899987401344
Q gi|255764472|r 253 SLSEIKGLVRLRYTTSHPRDMS--DCLIKAHGD-LDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDI 329 (469)
Q Consensus 253 ~l~~i~~~~riR~~s~~P~~~~--~~li~~~~~-~~~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~~~r~~~p~~ 329 (469)
+|.+......|-+ +-|+... +.+++.+.+ .+.++.|= ++. =++.-+..+.+.+.+.-+++++.+++..|++
T Consensus 123 ~Ir~~~P~~~iEv--LiPDF~G~~~~~l~~v~~a~PdV~nHN---iET-V~rL~~~VRp~a~Y~rSL~vL~~~k~~~p~~ 196 (289)
T PRK05481 123 AIRELSPGTTIEV--LIPDFRGRKDAALEIVVAAPPDVFNHN---LET-VPRLYKRVRPGADYERSLELLKRAKELDPGI 196 (289)
T ss_pred HHHHHCCCCEEEE--CCCCCCCCHHHHHHHHHHCCHHHHHCC---HHH-HHHHCCCCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 9985599977997--072114699999999985671776435---131-0443623388233899999999999748998
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEECCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 320000013522012478988633221011100200001112012321436889899999999999999999
Q gi|255764472|r 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQ 401 (469)
Q Consensus 330 ~i~tdiIvGfPgETeedf~~Tl~~i~~~~~~~~~vf~yS~r~gT~Aa~m~~qV~~~vk~~R~~~l~~~~~~~ 401 (469)
..-+.||||+ |||+++..++|+=+++..-|.+.+-+|- +|.- ..++ |..-+.-+...++.+.+.++
T Consensus 197 ~TKSgiMvGL-GEt~eEv~~~~~DL~~~gvdilTiGQYL-~Ps~--~hlp--V~ryv~P~eF~~~~~~a~~~ 262 (289)
T PRK05481 197 PTKSGLMVGL-GETDEEVLEVMDDLRAHGVDILTIGQYL-QPSR--KHLP--VERYVTPEEFDEYKEIALEL 262 (289)
T ss_pred CEEEEEEEEC-CCCHHHHHHHHHHHHHCCCCEEEECCCC-CCCC--CCCC--CEECCCHHHHHHHHHHHHHC
T ss_conf 2413567755-7889999999999998199899834035-8886--6688--43356989999999999975
No 57
>PRK12928 lipoyl synthase; Provisional
Probab=98.77 E-value=4e-08 Score=80.38 Aligned_cols=210 Identities=17% Similarity=0.229 Sum_probs=131.8
Q ss_pred CCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCCCHHHHH
Q ss_conf 77257874123324468111001221376410058899988763101331058731454113411344431000216788
Q gi|255764472|r 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253 (469)
Q Consensus 174 ~~~~a~ikI~~GC~~~CsfC~ip~~RG~~rSr~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y~g~~~~~~~~~l~~Ll~~ 253 (469)
+++-.|.=-.+-|-++|.||.|...+ .-...+++=.+=++...+-|.+.+|+|++|= ++--|+....|++-+++
T Consensus 58 ~gTATFMIlGd~CTR~C~FC~V~tg~--P~~lD~~EP~rvA~av~~m~LkyvVITSV~R----DDL~DgGA~hfa~~I~~ 131 (290)
T PRK12928 58 QGTATFLLMGSICTRRCAFCQVAKGR--PMPLDPDEPERVAEAVAALGLRYVVLTSVAR----DDLPDGGAAHFVATIAA 131 (290)
T ss_pred CCCCEEEECCCCCCCCCCCCCCCCCC--CCCCCHHHHHHHHHHHHHHCCCEEEEEEECC----CCCCCCCHHHHHHHHHH
T ss_conf 98428996678635489851553799--8989803479999999983897689841236----78866452999999999
Q ss_pred HHCCCCCCCCCCCCCCCCCCC--CHHHHHHCC-CCCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 620444300135442100010--003665202-21112201332111457899873033344114678999874013443
Q gi|255764472|r 254 LSEIKGLVRLRYTTSHPRDMS--DCLIKAHGD-LDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330 (469)
Q Consensus 254 l~~i~~~~riR~~s~~P~~~~--~~li~~~~~-~~~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~~~r~~~p~~~ 330 (469)
|.+......|-+ +-|+... +..++.+.+ .+.++.|= ++. =++.-+..+++.+.+.-+++++.+++..|++.
T Consensus 132 Ir~~~P~~~iEv--LiPDF~G~~~~al~~v~~a~pdV~nHN---iET-V~rL~~~VRp~A~Y~rSL~vL~~ak~~~~~i~ 205 (290)
T PRK12928 132 IRARNPGTGIEV--LTPDFWGGVARALATVLAAKPDCFNHN---LET-VPRLQKAVRRGADYQRSLDLLARAKELAPGIP 205 (290)
T ss_pred HHHHCCCCEEEE--ECHHHCCCHHHHHHHHHHCCCHHHHCC---CCC-CHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCE
T ss_conf 984599867997--071113687899999984685465455---012-04317124885508999999999997388852
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEECCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 20000013522012478988633221011100200001112012321436889899999999999999999
Q gi|255764472|r 331 ISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQ 401 (469)
Q Consensus 331 i~tdiIvGfPgETeedf~~Tl~~i~~~~~~~~~vf~yS~r~gT~Aa~m~~qV~~~vk~~R~~~l~~~~~~~ 401 (469)
.-+.||+|+ |||+++..++|+=+++..-|.+.+-+|- ||.- ..++ |..-+.-+...++.+.+.++
T Consensus 206 TKSgiMvGL-GEt~eEv~~~~~DLr~~gvdilTiGQYL-~Ps~--~h~p--V~ryv~P~eF~~~~~~a~~~ 270 (290)
T PRK12928 206 TKSGLMLGL-GETEDEVIETLRDLRAVDCDRLTIGQYL-RPSL--AHLP--VQRYWTPEEFEALGQIAREL 270 (290)
T ss_pred EEEEEEEEC-CCCHHHHHHHHHHHHHCCCCEEEECCCC-CCCC--CCCC--CEECCCHHHHHHHHHHHHHC
T ss_conf 413458860-5889999999999998199899824025-8886--6688--33356989999999999976
No 58
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=98.72 E-value=3.9e-07 Score=73.00 Aligned_cols=195 Identities=14% Similarity=0.218 Sum_probs=127.8
Q ss_pred EEECCCCCCCCCCCCH--HHHHHHHH-HHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCCCHHHHHHHC
Q ss_conf 7412332446811100--12213764-10058899988763101331058731454113411344431000216788620
Q gi|255764472|r 180 LTIQEGCDKFCTFCVV--PYTRGIEI-SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256 (469)
Q Consensus 180 ikI~~GC~~~CsfC~i--p~~RG~~r-Sr~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y~g~~~~~~~~~l~~Ll~~l~~ 256 (469)
+.+.+-||++|.||-- |+...+-. --++|+|..=++..++.|++.|-||| |.- .-...|.++++.+.+
T Consensus 15 iSvTdrCNfrC~YCm~eg~~~~~~~~~~Ls~eei~~~~~~~~~~Gv~kvRlTG-------GEP--llR~dl~eIi~~l~~ 85 (322)
T COG2896 15 ISVTDRCNFRCTYCMPEGPLAFLPKEELLSLEEIRRLVRAFAELGVEKVRLTG-------GEP--LLRKDLDEIIARLAR 85 (322)
T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEC-------CCC--HHHCCHHHHHHHHHH
T ss_conf 99826737746446888865667654548999999999999973964589718-------983--133279999998743
Q ss_pred CCCCCCCCCCCCCCCCC-CCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHH-CCCCCCCEE
Q ss_conf 44430013544210001-0003665202211122013321114578998730333441146789998740-134432000
Q gi|255764472|r 257 IKGLVRLRYTTSHPRDM-SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV-RPDIAISSD 334 (469)
Q Consensus 257 i~~~~riR~~s~~P~~~-~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~~~r~~-~p~~~i~td 334 (469)
. ++.-+.++ .+.+ .+...+.+++.+ ..-+++++.|-+++..+.+.+.-..+++++-++...++ +.-+.+.|.
T Consensus 86 ~-~~~~islT---TNG~~L~~~a~~Lk~AG--l~rVNVSLDsld~e~f~~IT~~~~~~~Vl~GI~~A~~~Gl~pVKlN~V 159 (322)
T COG2896 86 L-GIRDLSLT---TNGVLLARRAADLKEAG--LDRVNVSLDSLDPEKFRKITGRDRLDRVLEGIDAAVEAGLTPVKLNTV 159 (322)
T ss_pred C-CCCEEEEE---CCHHHHHHHHHHHHHCC--CCEEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 4-64428874---45676799999999759--868995034499899998867892999999999999769985578889
Q ss_pred EECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEECCCHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 00135220124789886332210111002000011120123214368898999999999
Q gi|255764472|r 335 FIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLC 393 (469)
Q Consensus 335 iIvGfPgETeedf~~Tl~~i~~~~~~~~~vf~yS~r~gT~Aa~m~~qV~~~vk~~R~~~ 393 (469)
+| +|=++.++.+.++|.+.... .+.+--|.|--...+..++..++.....++..+
T Consensus 160 v~---kgvNd~ei~~l~e~~~~~~~-~lrfIE~m~~g~~~~~~~~~~~~~~~i~~~l~~ 214 (322)
T COG2896 160 LM---KGVNDDEIEDLLEFAKERGA-QLRFIELMPLGEGNSWRLDKYLSLDEILRKLEE 214 (322)
T ss_pred EE---CCCCHHHHHHHHHHHHHCCC-CEEEEEEEECCCCCCHHHHCCCCHHHHHHHHHH
T ss_conf 84---69887899999999852698-447999866686540344044549999999986
No 59
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=98.71 E-value=1.5e-07 Score=76.02 Aligned_cols=173 Identities=14% Similarity=0.185 Sum_probs=111.9
Q ss_pred CCCCCCCCCCH----HHHHHHHHHHHHHHHHHHHHHHHHC-C-----CCEEEEECCCCCEEEECCCCCCCCCCCHHHHHH
Q ss_conf 32446811100----1221376410058899988763101-3-----310587314541134113444310002167886
Q gi|255764472|r 185 GCDKFCTFCVV----PYTRGIEISRSLSQVVDEARKLIDN-G-----VCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254 (469)
Q Consensus 185 GC~~~CsfC~i----p~~RG~~rSr~~~~Iv~ei~~l~~~-G-----~kEi~L~g~d~~~Y~g~~~~~~~~~l~~Ll~~l 254 (469)
=|+++|-||.. ....++..-.+.++|.++.+.+... | .+-+.++ +.|=+.--.+|.+|++.+
T Consensus 33 ~Cs~~CvyC~~G~~~~~~~~~~efi~~~~I~~~~~~~~~~~g~ea~~pd~vtis--------~~GEPTLy~~L~elI~~~ 104 (296)
T COG0731 33 WCSYNCVYCWRGRTKKGTPERPEFIVEESILEELKLLLGYKGDEATEPDHVTIS--------LSGEPTLYPNLGELIEEI 104 (296)
T ss_pred HHCCCCEEEECCCCCCCCCCCCCEECHHHHHHHHHHHHCCCCCCCCCCCEEEEE--------CCCCCCCCCCHHHHHHHH
T ss_conf 435777589666777777778724158999999999842256656788779993--------798833464889999999
Q ss_pred HCCCCC--CCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCH---HHHHHHHHHHH-CCC
Q ss_conf 204443--001354421000100036652022111220133211145789987303334411---46789998740-134
Q gi|255764472|r 255 SEIKGL--VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE---YRQIIDRIRSV-RPD 328 (469)
Q Consensus 255 ~~i~~~--~riR~~s~~P~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R~~~~e~---~~~~i~~~r~~-~p~ 328 (469)
.+..+. +-+--+++ ++.++.+.... .+-+++.+.+...+++.+|++.... ..+-++.+++. .-.
T Consensus 105 k~~g~~~tflvTNgsl------pdv~~~L~~~d----ql~~sLdA~~~~~~~~InRP~~~~~~e~ile~L~~~~~~~~~~ 174 (296)
T COG0731 105 KKRGKKTTFLVTNGSL------PDVLEELKLPD----QLYVSLDAPDEKTFRRINRPHKKDSWEKILEGLEIFRSEYKGR 174 (296)
T ss_pred HHCCCCEEEEEECCCH------HHHHHHHCCCC----EEEEEECCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 8607950899938976------99998740588----7999814688889998348887452999999999740127874
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEECCCHHHHH
Q ss_conf 4320000013522012478988633221011100200001112012321
Q gi|255764472|r 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377 (469)
Q Consensus 329 ~~i~tdiIvGfPgETeedf~~Tl~~i~~~~~~~~~vf~yS~r~gT~Aa~ 377 (469)
..+.|.++=|++- ++|++++..+|++.+.++.+-+-.|. |||.-...
T Consensus 175 ~vir~tlvkg~N~-~~e~~~~~a~ll~~~~Pd~velk~~~-rpgas~~~ 221 (296)
T COG0731 175 TVIRTTLVKGIND-DEEELEEYAELLERINPDFVELKTYM-RPGASRYR 221 (296)
T ss_pred EEEEEEEECCCCC-CHHHHHHHHHHHHHCCCCEEEEECCC-CCCHHHHC
T ss_conf 8999998526468-70889999999985399769983475-68767605
No 60
>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit. This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria.
Probab=98.70 E-value=8.3e-08 Score=78.01 Aligned_cols=186 Identities=18% Similarity=0.255 Sum_probs=111.6
Q ss_pred EEEEECCCCCCCCCCCCHHHHHHHH--HHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCCCHHHHHHH
Q ss_conf 7874123324468111001221376--41005889998876310133105873145411341134443100021678862
Q gi|255764472|r 178 AFLTIQEGCDKFCTFCVVPYTRGIE--ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255 (469)
Q Consensus 178 a~ikI~~GC~~~CsfC~ip~~RG~~--rSr~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y~g~~~~~~~~~l~~Ll~~l~ 255 (469)
.+|....=|...|+||.-..-.|.. .-.++++|++.++...+.|++||.++|=. ..+ ..+....+.+.
T Consensus 6 ~~In~TNiC~~~C~FCaF~r~~~~~~ay~ls~eei~~~~~ea~~~G~tEv~i~gG~---------~P~-~~~~~~~~~l~ 75 (322)
T TIGR03550 6 VFIPLTRLCRNRCGYCTFRRPPGELEAALLSPEEVLEILRKGAAAGCTEALFTFGE---------KPE-ERYPEAREWLA 75 (322)
T ss_pred CCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCC---------CHH-HHHHHHHHHHH
T ss_conf 15688720317696788516899988774799999999999997798799964886---------800-34999999999
Q ss_pred CCC---------CCCCCCC--CC----CCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCC----CCCHHH
Q ss_conf 044---------4300135--44----2100010003665202211122013321114578998730333----441146
Q gi|255764472|r 256 EIK---------GLVRLRY--TT----SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH----TAYEYR 316 (469)
Q Consensus 256 ~i~---------~~~riR~--~s----~~P~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R~~----~~e~~~ 316 (469)
+.. .+..+-+ .. .++..++.+-+..+++.. ..+....+.+++.....+++.. ..++.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~t~eel~~Lk~~~---aglg~~~e~~ae~l~~~vr~~~~P~K~~~~~l 152 (322)
T TIGR03550 76 EMGYDSTLEYLRELCELALEETGLLPHTNPGVMSRDELARLKPVN---ASMGLMLETTSERLCKGEAHYGSPGKDPAVRL 152 (322)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCC---CCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH
T ss_conf 848861789999999999986335654476768899999876318---62666788888753222356779998879999
Q ss_pred HHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCC-----CHHEEECCCHHHHHCC
Q ss_conf 78999874013443200000135220124789886332210111002-----0000111201232143
Q gi|255764472|r 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAF-----SFKYSPRLGTPGSNML 379 (469)
Q Consensus 317 ~~i~~~r~~~p~~~i~tdiIvGfPgETeedf~~Tl~~i~~~~~~~~~-----vf~yS~r~gT~Aa~m~ 379 (469)
+.++...+. |+-.+++++.|+ +||.||--+.|.-+++++-..-| ..+|.|.++|+....+
T Consensus 153 ~i~~~Ah~l--Gi~ttaTml~Gh-iEt~eeri~HL~~lR~lQdetggf~efIp~~F~p~~~~~~~~~~ 217 (322)
T TIGR03550 153 ETIEDAGRL--KIPFTTGILIGI-GETREERAESLLAIRELHERYGHIQEVIVQNFRAKPGTPMENHP 217 (322)
T ss_pred HHHHHHHHC--CCCEEEEEEEEC-CCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCC
T ss_conf 999999985--996151234204-69999999999999987865296579962676689986455699
No 61
>PRK07360 FO synthase subunit 2; Reviewed
Probab=98.69 E-value=1.5e-07 Score=76.18 Aligned_cols=193 Identities=15% Similarity=0.241 Sum_probs=121.6
Q ss_pred EEEEECCCCCCCCCCCCHHHHHHH--HHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCC-CCCCCCHHHHHH
Q ss_conf 787412332446811100122137--64100588999887631013310587314541134113444-310002167886
Q gi|255764472|r 178 AFLTIQEGCDKFCTFCVVPYTRGI--EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG-EKCTFSDLLYSL 254 (469)
Q Consensus 178 a~ikI~~GC~~~CsfC~ip~~RG~--~rSr~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y~g~~~~~-~~~~l~~Ll~~l 254 (469)
.+|+...=|...|.||.-....|. ....++++|++.++...+.|++|+.++|=.--.+ +... ....+.++++.+
T Consensus 62 ~~In~TNiC~~~C~fCaF~r~p~~~~ay~ls~eEi~~~~~~a~~~G~tEv~~~gG~~P~l---~~~~~~~~~y~~~~~~i 138 (375)
T PRK07360 62 RNINFTNICEGHCGFCAFRRDKGDPGAFWLDIEEILEKAAEAVKAGATEVCIQGGLHPAA---DLNGSSLDFYLEILKAI 138 (375)
T ss_pred ECCCHHHHHHCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHCCCEEEEECCCCCCCC---CCCCCHHHHHHHHHHHH
T ss_conf 266561798708982734078899766027899999999999865880899768878344---54645189999999999
Q ss_pred HCCCCCCCCCCCCCCCCC---------C-CCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCC-CCCCCHHHHHHHHHH
Q ss_conf 204443001354421000---------1-00036652022111220133211145789987303-334411467899987
Q gi|255764472|r 255 SEIKGLVRLRYTTSHPRD---------M-SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR-RHTAYEYRQIIDRIR 323 (469)
Q Consensus 255 ~~i~~~~riR~~s~~P~~---------~-~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R-~~~~e~~~~~i~~~r 323 (469)
.+.-.. +.+...-|.. + .++.+..+++.+ +-...+-+.+--+++|-+.+-- +.+.+++++.++.+.
T Consensus 139 k~~~p~--i~i~a~s~~Ei~~~a~~~g~~~~e~l~~LkeAG-l~s~pG~gaEil~~~vr~~i~P~K~~~~~wl~v~~~Ah 215 (375)
T PRK07360 139 KAEFPG--IHLHAFSPQEVQFAAREDGLSYEEVLKALKDAG-LDSMPGTAAEILDDEVRRIICPEKITTAEWIEIVKTAH 215 (375)
T ss_pred HHHCCC--CEEEECCHHHHHHHHHHCCCCHHHHHHHHHHCC-CCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf 986898--556408999999988664998899999999769-87588876210345566465989889999999999999
Q ss_pred HHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEECC----CHHHHHCC
Q ss_conf 401344320000013522012478988633221011100200001112----01232143
Q gi|255764472|r 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL----GTPGSNML 379 (469)
Q Consensus 324 ~~~p~~~i~tdiIvGfPgETeedf~~Tl~~i~~~~~~~~~vf~yS~r~----gT~Aa~m~ 379 (469)
+. ++-.++++++|+. ||.+|--+.|..+++++=...|+..|-|-+ +||-..+.
T Consensus 216 ~l--Gi~ttatmL~Gh~-Et~eerv~hL~~iR~lqd~tggf~efIp~~F~~~nt~l~~~~ 272 (375)
T PRK07360 216 KL--GLPTTSTMMYGHI-ETPEHRIDHLSILREIQKETGGITEFIPLPFVHENAPLYERG 272 (375)
T ss_pred HC--CCCCCEEEECCCC-CCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCC
T ss_conf 82--9970100261898-999999999999998887449846997114358998500015
No 62
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=98.60 E-value=1.5e-06 Score=68.52 Aligned_cols=178 Identities=12% Similarity=0.196 Sum_probs=124.3
Q ss_pred CCEEEEEECCCCCCCCCCCCHHHHHHH-HHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCCCHHHHH
Q ss_conf 725787412332446811100122137-6410058899988763101331058731454113411344431000216788
Q gi|255764472|r 175 GVTAFLTIQEGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253 (469)
Q Consensus 175 ~~~a~ikI~~GC~~~CsfC~ip~~RG~-~rSr~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y~g~~~~~~~~~l~~Ll~~ 253 (469)
|...++.+.+-||-+|.+|-.+....+ ..-.+.+++.+-++.+.+.|+..|.|+| |.-+ -...|.+|++.
T Consensus 16 P~~v~~elT~~CNL~C~hCy~~~~~~~~~~ELs~~e~~~~id~l~~~Gv~~v~~tG-------GEPl--lr~D~~ei~~~ 86 (375)
T PRK05301 16 PLWLLAELTYRCPLQCPYCSNPLDLARHGAELSTAEWIRVLREARALGVLQLHFSG-------GEPL--LRKDLEELVAH 86 (375)
T ss_pred CEEEEEHHHCHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECC-------CCCC--CCCCHHHHHHH
T ss_conf 72843573140078784669850048765789999999999999986998899618-------6524--56689999999
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHC-CCCCCCHHHHHHHHHHHHCCCCCCC
Q ss_conf 620444300135442100010003665202211122013321114578998730-3334411467899987401344320
Q gi|255764472|r 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN-RRHTAYEYRQIIDRIRSVRPDIAIS 332 (469)
Q Consensus 254 l~~i~~~~riR~~s~~P~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~-R~~~~e~~~~~i~~~r~~~p~~~i~ 332 (469)
+.+. |+ ++-+ +.+-..++++.++.+++.+ ..++.++|.++++.+-..++ ++.+-+...+.++.++++--.+.+.
T Consensus 87 a~~~-G~-~~~l-~TNG~lit~~~a~~L~~~g--l~~v~vSlDg~~~e~hD~~rG~~G~f~~~~~~i~~l~~~Gi~v~i~ 161 (375)
T PRK05301 87 ARRL-GL-YTNL-ITSGVGLTEARLAALKAAG--LDHIQLSFQDSDPELADRIAGTRGAFAQKLEVARLVKAHGYPLTLN 161 (375)
T ss_pred HHHC-CC-EEEE-EECCCCCCHHHHHHHHHHC--CCEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 9976-97-5899-6067455799999998509--9889995677987787776378862999999999999749816999
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHH--EEEC
Q ss_conf 0000135220124789886332210111002000--0111
Q gi|255764472|r 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK--YSPR 370 (469)
Q Consensus 333 tdiIvGfPgETeedf~~Tl~~i~~~~~~~~~vf~--yS~r 370 (469)
|++ --.+-.+..+.++|++++..+++.+.. |+.|
T Consensus 162 ~ti----~r~N~~~l~~i~~la~~lGv~~~~l~~~~~~Gr 197 (375)
T PRK05301 162 AVI----HRHNIDQIPRIIELAVELGADRLELANTQYYGW 197 (375)
T ss_pred EEE----CCCCHHHHHHHHHHHHHCCCCEEEEEEEEEECC
T ss_conf 872----305688899999999972998289876567510
No 63
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=98.60 E-value=2.7e-07 Score=74.21 Aligned_cols=188 Identities=16% Similarity=0.283 Sum_probs=113.5
Q ss_pred EEEEECCCCCCCCCCCCHHHHHH--HHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCCCHHHHHHH
Q ss_conf 78741233244681110012213--7641005889998876310133105873145411341134443100021678862
Q gi|255764472|r 178 AFLTIQEGCDKFCTFCVVPYTRG--IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255 (469)
Q Consensus 178 a~ikI~~GC~~~CsfC~ip~~RG--~~rSr~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y~g~~~~~~~~~l~~Ll~~l~ 255 (469)
.+|..+.=|.++|+||.--...| +-.-.++++|.++++.+.+.|++||.++|=.--.+ ....+.++++.+.
T Consensus 61 ~~in~TN~C~~~C~fCaF~~~~~~~~~y~Ls~eeI~~~~~~~~~~G~~Evli~gG~~p~~-------~~~y~~~~~~~ik 133 (370)
T COG1060 61 RNINYTNICVNDCTFCAFYRKPGDPKAYTLSPEEILEEVREAVKRGITEVLIVGGEHPEL-------SLEYYEELFRTIK 133 (370)
T ss_pred ECCCCCHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCC-------CHHHHHHHHHHHH
T ss_conf 257853233179972623457888655316999999999999875986999805768774-------3679999999998
Q ss_pred C-CCCCCCCC-CCCC--C----CCCC-CCHHHHHHCCCCC-CCCCEEEEEECCCHHHHHHHC-CCCCCCHHHHHHHHHHH
Q ss_conf 0-44430013-5442--1----0001-0003665202211-122013321114578998730-33344114678999874
Q gi|255764472|r 256 E-IKGLVRLR-YTTS--H----PRDM-SDCLIKAHGDLDV-LMPYLHLPVQSGSDRILKSMN-RRHTAYEYRQIIDRIRS 324 (469)
Q Consensus 256 ~-i~~~~riR-~~s~--~----P~~~-~~~li~~~~~~~~-i~~~lhlpiQSgs~~vLk~M~-R~~~~e~~~~~i~~~r~ 324 (469)
+ .+ ...++ ++.. + +..+ .+|.++.+++.+- .+|-. .-+=-++++-+..- .+.+.+.+++..+.+.+
T Consensus 134 ~~~p-~~~i~a~s~~ei~~~~~~~~~s~~E~l~~Lk~aGldsmpg~--~aeil~e~vr~~~~p~K~~~~~wle~~~~Ah~ 210 (370)
T COG1060 134 EEFP-DLHIHALSAGEILFLAREGGLSYEEVLKRLKEAGLDSMPGG--GAEILSEEVRKIHCPPKKSPEEWLEIHERAHR 210 (370)
T ss_pred HHCC-CHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCC--CEEECHHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 8573-03430167888679874368889999999997698767475--41141677998637988999999999999997
Q ss_pred HCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEE-----ECCCH-HHHHC
Q ss_conf 01344320000013522012478988633221011100200001-----11201-23214
Q gi|255764472|r 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS-----PRLGT-PGSNM 378 (469)
Q Consensus 325 ~~p~~~i~tdiIvGfPgETeedf~~Tl~~i~~~~~~~~~vf~yS-----~r~gT-~Aa~m 378 (469)
. |+-.+++.++|+ +||.+|..++|.-+++++=..-|+..|+ |.+++ ++..+
T Consensus 211 l--GI~~tatml~Gh-~E~~ed~~~hl~~ir~lQ~~~gg~~~fI~~~f~p~~~~~~~~~~ 267 (370)
T COG1060 211 L--GIPTTATMLLGH-VETREDRIDHLEHIRDLQDETGGFQEFIPLRFRPENGPLPAEVV 267 (370)
T ss_pred C--CCCCCCEEEEEE-CCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCC
T ss_conf 6--998420347873-28889999999999999998589579980554578887666678
No 64
>PRK05927 hypothetical protein; Provisional
Probab=98.51 E-value=1e-06 Score=69.87 Aligned_cols=182 Identities=12% Similarity=0.113 Sum_probs=116.9
Q ss_pred EEEECCCCCCCCCCCCHHHHHHH--HHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCCCHHHHHHHC
Q ss_conf 87412332446811100122137--6410058899988763101331058731454113411344431000216788620
Q gi|255764472|r 179 FLTIQEGCDKFCTFCVVPYTRGI--EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256 (469)
Q Consensus 179 ~ikI~~GC~~~CsfC~ip~~RG~--~rSr~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y~g~~~~~~~~~l~~Ll~~l~~ 256 (469)
+|+-..=|...|.||.--...|. ....++|+|++.++...+.|++||.+.|=.--.+ .-..+.++++.+.+
T Consensus 48 ~iN~TNvC~~~C~FCaF~r~~~~~~ay~ls~eei~~~~~e~~~~G~tEv~i~GG~~P~l-------~~eyy~~l~r~ik~ 120 (350)
T PRK05927 48 NPNYTNICKIDCTFCAFYRKPRSSDAYLLSFDEFRSLMQRYVSSGVKTVLLQGGVHPQL-------GIDYLEELVRITVQ 120 (350)
T ss_pred CCCCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCC-------CHHHHHHHHHHHHH
T ss_conf 87741256576934774258999875327999999999999866983899826889999-------86999999999997
Q ss_pred C-CCCCCCCCCCCCCCCC----------CCHHHHHHCCCCCC--CCCEEEEEECCCHHHHHHHCC-CCCCCHHHHHHHHH
Q ss_conf 4-4430013544210001----------00036652022111--220133211145789987303-33441146789998
Q gi|255764472|r 257 I-KGLVRLRYTTSHPRDM----------SDCLIKAHGDLDVL--MPYLHLPVQSGSDRILKSMNR-RHTAYEYRQIIDRI 322 (469)
Q Consensus 257 i-~~~~riR~~s~~P~~~----------~~~li~~~~~~~~i--~~~lhlpiQSgs~~vLk~M~R-~~~~e~~~~~i~~~ 322 (469)
. |++ .++ ..-|.++ .++.+..+++.+ + +|- -+-+=-||+|-+.+-. +.+.++++++.+.+
T Consensus 121 ~~P~i-~ih--afs~~Ei~~~a~~~g~s~~e~L~~Lk~AG-L~slPG--gGAEIl~d~VR~~I~p~K~s~~~Wl~i~~~A 194 (350)
T PRK05927 121 EFPSL-HPH--FFSAVEIAHAAQVSGISTEQALQRLWDAG-QRTIPG--GGAEILSERVRKIISPKKMGPDGWINFHKLA 194 (350)
T ss_pred HCCCC-CCC--CCCHHHHHHHHHHCCCCHHHHHHHHHHCC-CCCCCC--CCCCCCCHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 48886-656--69999999999885999999999999737-676899--8750168777751488888999999999999
Q ss_pred HHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEEC----CCHHHH
Q ss_conf 740134432000001352201247898863322101110020000111----201232
Q gi|255764472|r 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR----LGTPGS 376 (469)
Q Consensus 323 r~~~p~~~i~tdiIvGfPgETeedf~~Tl~~i~~~~~~~~~vf~yS~r----~gT~Aa 376 (469)
.+. |+..+++++.|+ +||.+|.-+-|..+++++=..-+...|-|- .+|+-.
T Consensus 195 H~l--Gi~ttaTmlyGh-iEt~e~ri~HL~~lR~lQdeTgGF~~FIpl~F~p~nt~l~ 249 (350)
T PRK05927 195 HRL--GFRSTATMMFGH-VENPEDILLHLQTLRDAQDENPGFYSFIPWSYKPGNTALG 249 (350)
T ss_pred HHC--CCCCCCEEECCC-CCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCHHH
T ss_conf 985--997520246368-7999999999999999876509879999467654887465
No 65
>PRK08444 hypothetical protein; Provisional
Probab=98.45 E-value=1.8e-06 Score=68.10 Aligned_cols=178 Identities=9% Similarity=0.148 Sum_probs=115.1
Q ss_pred EEEECCCCCCCCCCCCHHHHHHH--HHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCCCHHHHHHHC
Q ss_conf 87412332446811100122137--6410058899988763101331058731454113411344431000216788620
Q gi|255764472|r 179 FLTIQEGCDKFCTFCVVPYTRGI--EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256 (469)
Q Consensus 179 ~ikI~~GC~~~CsfC~ip~~RG~--~rSr~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y~g~~~~~~~~~l~~Ll~~l~~ 256 (469)
.|..+.=|...|.||.--...|. ....++|+|++.++...+.|++||.+.|=.--.+ ......+|++.+.+
T Consensus 52 ~IN~TNiC~~~C~FCaF~r~~~~~~aY~ls~eei~~~~~ea~~~G~tev~i~GG~~P~~-------~~eyY~~l~r~ik~ 124 (353)
T PRK08444 52 HINPTNICADVCKFCAFSAHRKNPNPYTMSHEEILEIVKESVKRGIKEVHIVSAHNPNY-------GYQWYLEIFKMIKE 124 (353)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHCCCCEEEEECCCCCCC-------CHHHHHHHHHHHHH
T ss_conf 74566445688856756168999987666999999999999975987899814759899-------75889999999998
Q ss_pred CCCCCCCCCCCCCCCCC----------CCHHHHHHCCCCCCCCCE-EEEEECCCHHHHHHHCC-CCCCCHHHHHHHHHHH
Q ss_conf 44430013544210001----------000366520221112201-33211145789987303-3344114678999874
Q gi|255764472|r 257 IKGLVRLRYTTSHPRDM----------SDCLIKAHGDLDVLMPYL-HLPVQSGSDRILKSMNR-RHTAYEYRQIIDRIRS 324 (469)
Q Consensus 257 i~~~~riR~~s~~P~~~----------~~~li~~~~~~~~i~~~l-hlpiQSgs~~vLk~M~R-~~~~e~~~~~i~~~r~ 324 (469)
.-.. +.+...-|.++ .++.+..+++.+ + ..+ .-+.+=-+|+|-+..-. +.+.++++++++.+.+
T Consensus 125 ~~P~--i~i~aft~~EI~~~a~~~~~s~~evL~~Lk~AG-L-~slpGggAEIl~d~VR~~I~p~K~~~~~Wl~i~~~AH~ 200 (353)
T PRK08444 125 AYPN--LHVKAMTAAEVDFLSRKFGKSYEEVLEDMLEYG-V-DSMPGGGAEIFDEEVRKKICKGKVSSERWLEIHKYWHK 200 (353)
T ss_pred HCCC--EEEEECCHHHHHHHHHHCCCCHHHHHHHHHHHC-C-CCCCCCCCHHCCHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 5885--047717789999999980999999999999819-8-75789872003777897618998999999999999998
Q ss_pred HCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEEC
Q ss_conf 0134432000001352201247898863322101110020000111
Q gi|255764472|r 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370 (469)
Q Consensus 325 ~~p~~~i~tdiIvGfPgETeedf~~Tl~~i~~~~~~~~~vf~yS~r 370 (469)
. |+.-+++++.|+ +||.||.-+-|..+++++=...++..|-|-
T Consensus 201 l--Gi~ttaTmmyGh-vEt~e~rv~HL~~lR~lQd~tgGF~~FIPl 243 (353)
T PRK08444 201 K--GKQSNATMLFGH-IENREHRIDHMLRLRDLQDKTGGFNAFIPL 243 (353)
T ss_pred C--CCCCCEEEECCC-CCCHHHHHHHHHHHHHHCCCCCCEEEEEEC
T ss_conf 2--996641467788-799999999999999836557983589765
No 66
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism]
Probab=98.44 E-value=1.3e-06 Score=69.04 Aligned_cols=167 Identities=18% Similarity=0.227 Sum_probs=110.4
Q ss_pred CCEEEEEECCCCCCCCCCCCHHHHHHH-HHHHHHHHHHHHHHHHHHC-CCCEEEEECCCCCEEEECCCCCCCCCCCHHHH
Q ss_conf 725787412332446811100122137-6410058899988763101-33105873145411341134443100021678
Q gi|255764472|r 175 GVTAFLTIQEGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252 (469)
Q Consensus 175 ~~~a~ikI~~GC~~~CsfC~ip~~RG~-~rSr~~~~Iv~ei~~l~~~-G~kEi~L~g~d~~~Y~g~~~~~~~~~l~~Ll~ 252 (469)
+.++.+.+..+|.-.|-||-=..+-|. -..++.+++-..+..+.+. -++||.|+| |+-+-.....|..|++
T Consensus 110 ~drvLll~t~~C~vyCRyCfRr~~~~~~~~~~~~~~~~~al~YIa~hPeI~eVllSG-------GDPL~ls~~~L~~ll~ 182 (369)
T COG1509 110 PDRVLLLVTGVCAVYCRYCFRRRFVGQDNQGFNKEEWDKALDYIAAHPEIREVLLSG-------GDPLSLSDKKLEWLLK 182 (369)
T ss_pred CCEEEEEECCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHEEEECC-------CCCCCCCHHHHHHHHH
T ss_conf 884899964866452100013455566656678899999999997395165177407-------8756368899999999
Q ss_pred HHHCCCCCCCCCCCC----CCCCCCCCHHHHHHCCC-CCCC--CCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 862044430013544----21000100036652022-1112--2013321114578998730333441146789998740
Q gi|255764472|r 253 SLSEIKGLVRLRYTT----SHPRDMSDCLIKAHGDL-DVLM--PYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 (469)
Q Consensus 253 ~l~~i~~~~riR~~s----~~P~~~~~~li~~~~~~-~~i~--~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~~~r~~ 325 (469)
+|.+|+.+.+||++| ..|.-++++|++.+++. ..++ .|| -|... -.+.+.+++++++.+
T Consensus 183 ~L~~IpHv~iiRi~TR~pvv~P~RIt~~L~~~l~~~~~~v~~~tH~----NHp~E----------it~e~~~A~~~L~~a 248 (369)
T COG1509 183 RLRAIPHVKIIRIGTRLPVVLPQRITDELCEILGKSRKPVWLVTHF----NHPNE----------ITPEAREACAKLRDA 248 (369)
T ss_pred HHHCCCCEEEEEEECCCCEECHHHHCHHHHHHHHCCCCEEEEECCC----CCHHH----------CCHHHHHHHHHHHHC
T ss_conf 8754896469986246743154440699999872358607998035----88354----------689999999999975
Q ss_pred CCCCCCC--EEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEEC
Q ss_conf 1344320--00001352201247898863322101110020000111
Q gi|255764472|r 326 RPDIAIS--SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370 (469)
Q Consensus 326 ~p~~~i~--tdiIvGfPgETeedf~~Tl~~i~~~~~~~~~vf~yS~r 370 (469)
|+.+. |=+.-|- .+|++-..+++++ +..++|-||+-=
T Consensus 249 --Gv~l~NQsVLLrGV----ND~~evl~~L~~~--L~~~gV~PYYl~ 287 (369)
T COG1509 249 --GVPLLNQSVLLRGV----NDDPEVLKELSRA--LFDAGVKPYYLH 287 (369)
T ss_pred --CCEEECCHHEECCC----CCCHHHHHHHHHH--HHHCCCCCEEEE
T ss_conf --95653241011466----7999999999999--997488621785
No 67
>PRK09234 fbiC FO synthase; Reviewed
Probab=98.42 E-value=5.4e-07 Score=71.91 Aligned_cols=176 Identities=17% Similarity=0.251 Sum_probs=112.5
Q ss_pred EEECCCCCCCCCCCCHHHHHHH--HHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCCCHHHHHHHCC
Q ss_conf 7412332446811100122137--64100588999887631013310587314541134113444310002167886204
Q gi|255764472|r 180 LTIQEGCDKFCTFCVVPYTRGI--EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257 (469)
Q Consensus 180 ikI~~GC~~~CsfC~ip~~RG~--~rSr~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y~g~~~~~~~~~l~~Ll~~l~~i 257 (469)
|....=|...|.||.--.-+|. -...++++|.+.++...+.|+.||.+.|=---.| ....+.++++.+.+.
T Consensus 534 INyTNVC~~~C~FCAF~r~~~~~~aY~ls~eeI~~r~~EA~~~GaTEV~iqGGihP~l-------~~~~Y~di~r~iK~~ 606 (846)
T PRK09234 534 INFTNICYTGCRFCAFAQRKGDADAYSLSLDEVADRAWEAWVAGATEVCMQGGIDPEL-------PGTGYADLVRAVKAR 606 (846)
T ss_pred CCHHHHHHCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHCCCEEEEECCCCCCCC-------CHHHHHHHHHHHHHH
T ss_conf 6388775517973514478899876118999999999999976987998347879899-------878999999999986
Q ss_pred CCCCCCCCCCCCCCCC----------CCHHHHHHCCCCCCCCCEEEE---EECCCHHHHHHHC-CCCCCCHHHHHHHHHH
Q ss_conf 4430013544210001----------000366520221112201332---1114578998730-3334411467899987
Q gi|255764472|r 258 KGLVRLRYTTSHPRDM----------SDCLIKAHGDLDVLMPYLHLP---VQSGSDRILKSMN-RRHTAYEYRQIIDRIR 323 (469)
Q Consensus 258 ~~~~riR~~s~~P~~~----------~~~li~~~~~~~~i~~~lhlp---iQSgs~~vLk~M~-R~~~~e~~~~~i~~~r 323 (469)
-....|+ ..-|.++ .+|.+..+++.+ +-. || -+=-+|+|-+.+- .+-+.++++++++...
T Consensus 607 ~P~ihih--AFSp~EI~~~A~~~g~s~~E~L~~LkeAG-L~S---lPGggAEIL~d~VR~~Icp~K~~~~~Wlev~~~AH 680 (846)
T PRK09234 607 VPSMHVH--AFSPMEIANGATRSGLSIREWLTALREAG-LDT---IPGTAAEILDDEVRWVLTKGKLPTAEWIEVVTTAH 680 (846)
T ss_pred CCCCEEE--CCCHHHHHHHHHHCCCCHHHHHHHHHHCC-CCC---CCCCCCHHCCHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 8987045--08999999999982999999999999809-777---99974132587999976888888999999999999
Q ss_pred HHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEECC
Q ss_conf 401344320000013522012478988633221011100200001112
Q gi|255764472|r 324 SVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 (469)
Q Consensus 324 ~~~p~~~i~tdiIvGfPgETeedf~~Tl~~i~~~~~~~~~vf~yS~r~ 371 (469)
+. |+--++++|.|+ .||.++.-+-|..+++++=.--+...|-|-|
T Consensus 681 ~l--Gl~TtATMmyGH-vEt~e~rv~HL~~lR~lQdeTGGFteFIPL~ 725 (846)
T PRK09234 681 EV--GLRSSSTMMYGH-VDTPRHWVAHLRVLRDIQDRTGGFTEFVPLP 725 (846)
T ss_pred HC--CCCCCCEEECCC-CCCHHHHHHHHHHHHHHHHHHCCEEEEEECC
T ss_conf 85--997521243567-7999999999999999998759955997467
No 68
>PRK08445 hypothetical protein; Provisional
Probab=98.39 E-value=2.3e-06 Score=67.21 Aligned_cols=178 Identities=10% Similarity=0.123 Sum_probs=115.7
Q ss_pred EEEECCCCCCCCCCCCHHHHHHH--HHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCCCHHHHHHHC
Q ss_conf 87412332446811100122137--6410058899988763101331058731454113411344431000216788620
Q gi|255764472|r 179 FLTIQEGCDKFCTFCVVPYTRGI--EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256 (469)
Q Consensus 179 ~ikI~~GC~~~CsfC~ip~~RG~--~rSr~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y~g~~~~~~~~~l~~Ll~~l~~ 256 (469)
.|....=|...|.||.--...|. ....++|+|++.++...+.|++||.+.|=---.+ ....+.+|++.|.+
T Consensus 45 niN~TNiC~~~C~FCaF~r~~~~~~aY~ls~eei~~~~~~a~~~g~tEv~i~GG~~P~l-------~~~yY~~l~r~ik~ 117 (348)
T PRK08445 45 NINYTNICWVDCKFCAFYRHLKEEDAYILSFEEIDQKIEELLAIGGTQILFQGGVHPKL-------KIEWYENLVSHIAQ 117 (348)
T ss_pred CCCHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCC-------CHHHHHHHHHHHHH
T ss_conf 87552686548977757479999876227999999999999864981899827989999-------77799999999997
Q ss_pred CCCCCCCCCCCCCCCCC----------CCHHHHHHCCCCCC-CCCEEEEEECCCHHHHHHHC-CCCCCCHHHHHHHHHHH
Q ss_conf 44430013544210001----------00036652022111-22013321114578998730-33344114678999874
Q gi|255764472|r 257 IKGLVRLRYTTSHPRDM----------SDCLIKAHGDLDVL-MPYLHLPVQSGSDRILKSMN-RRHTAYEYRQIIDRIRS 324 (469)
Q Consensus 257 i~~~~riR~~s~~P~~~----------~~~li~~~~~~~~i-~~~lhlpiQSgs~~vLk~M~-R~~~~e~~~~~i~~~r~ 324 (469)
.-.. +.+-..-|.++ .+|.+..+++.+-= +|- -+.+=-||+|-+.+- .+.+.++++++++.+.+
T Consensus 118 ~~P~--i~ihaft~~EI~~~a~~~~~s~~EvL~~Lk~AGL~slPG--ggAEIl~d~VR~~I~p~K~s~~~Wlei~~~AH~ 193 (348)
T PRK08445 118 KYPT--ITIHGFSAVEIDYIAKISKISLKEVLERLQAKGLSSIPG--AGAEILSDRVRDIIAPKKLSSDRWLEVHRQAHK 193 (348)
T ss_pred HCCC--CCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCC--CCHHHCCHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 5775--424279999999999981989999999999819887888--662634889998748888999999999999998
Q ss_pred HCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEEC
Q ss_conf 0134432000001352201247898863322101110020000111
Q gi|255764472|r 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370 (469)
Q Consensus 325 ~~p~~~i~tdiIvGfPgETeedf~~Tl~~i~~~~~~~~~vf~yS~r 370 (469)
. |+.-+++++.|+ .||.|+.-+-|..+++++=..-+...|-|-
T Consensus 194 l--Gi~ttaTMlyGh-iEt~e~rv~HL~~lR~lQdeTgGF~~FIpl 236 (348)
T PRK08445 194 I--GMKSTATMMFGT-VENDEEIIEHWEHIRDLQDETGGFRAFILW 236 (348)
T ss_pred C--CCCCCCEEECCC-CCCHHHHHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 6--996412136267-799999999999999999861997899854
No 69
>PRK11194 hypothetical protein; Provisional
Probab=98.33 E-value=3.2e-05 Score=58.66 Aligned_cols=182 Identities=15% Similarity=0.319 Sum_probs=114.6
Q ss_pred CCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-------CC---CCEEEEECCCCCEEEECCCCCC
Q ss_conf 7725787412332446811100122137641005889998876310-------13---3105873145411341134443
Q gi|255764472|r 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLID-------NG---VCEITLLGQNVNAWRGKGLDGE 243 (469)
Q Consensus 174 ~~~~a~ikI~~GC~~~CsfC~ip~~RG~~rSr~~~~Iv~ei~~l~~-------~G---~kEi~L~g~d~~~Y~g~~~~~~ 243 (469)
.+...-|.-|-||+..|+||.+-. -|-.|.-...+|++|+-...+ .| +..||+.| .|=+
T Consensus 101 ~r~T~CvSSQVGC~m~C~FCaTG~-~Gl~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~i~NiVfMG--------MGEP-- 169 (372)
T PRK11194 101 DRATLCVSSQVGCALECKFCSTAQ-QGFNRNLRVSEIIGQVWRAAKIIGAAKVTGQRPITNVVMMG--------MGEP-- 169 (372)
T ss_pred CCEEEEEEECCCCCCCCCCCCCCC-CHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEC--------CCCH--
T ss_conf 976899864376368998445886-44304878899999999999985320123666532167843--------7842--
Q ss_pred CCCCCHHHHHHHCCC---C----CCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHH---HHCCCCCCC
Q ss_conf 100021678862044---4----300135442100010003665202211122013321114578998---730333441
Q gi|255764472|r 244 KCTFSDLLYSLSEIK---G----LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILK---SMNRRHTAY 313 (469)
Q Consensus 244 ~~~l~~Ll~~l~~i~---~----~~riR~~s~~P~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk---~M~R~~~~e 313 (469)
-.++..+++.+.-+. | -.+|-+|+. .+.+.+..+ ++... -.|-+++-+.+|..=. -.||+|..+
T Consensus 170 L~NydnV~~ai~il~~~~g~~~s~R~ITvST~---Givp~I~~l-~e~~~--v~LAiSLHA~~de~R~~lmPin~~ypl~ 243 (372)
T PRK11194 170 LLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTS---GVVPALDKL-GDMID--VALAISLHAPNDELRDEIVPINKKYNIE 243 (372)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCEEEEECC---CCCHHHHHH-HHHCC--CCEEEEECCCCHHHHHHHHCHHCCCCHH
T ss_conf 55399999999986485466777785899777---872699999-86315--6569871589868898771103158989
Q ss_pred HHHHHHHHHHHH-CC---CCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEECCCHH
Q ss_conf 146789998740-13---44320000013522012478988633221011100200001112012
Q gi|255764472|r 314 EYRQIIDRIRSV-RP---DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTP 374 (469)
Q Consensus 314 ~~~~~i~~~r~~-~p---~~~i~tdiIvGfPgETeedf~~Tl~~i~~~~~~~~~vf~yS~r~gT~ 374 (469)
+.+++++..-+. .. -++|-=-+|-|+ ..+++|.++..++++..+ -++|.-||-|-||++
T Consensus 244 ~L~~a~~~y~~~t~~~~~rvt~EYvLi~gv-NDs~e~A~~L~~llk~~~-~~VNLIp~Np~~~~~ 306 (372)
T PRK11194 244 TFLAAVRRYLEKSNANQGRVTVEYVMLDHV-NDSTEHAHQLAELLKDTP-CKINLIPWNPFPGAP 306 (372)
T ss_pred HHHHHHHHHHHHHCCCCCEEEEEEEEECCC-CCCHHHHHHHHHHHCCCC-CCEEEECCCCCCCCC
T ss_conf 999999999997067885289999983687-899999999999975998-607745689989988
No 70
>COG2516 Biotin synthase-related enzyme [General function prediction only]
Probab=98.31 E-value=5.1e-06 Score=64.66 Aligned_cols=225 Identities=20% Similarity=0.274 Sum_probs=122.5
Q ss_pred CCCEEEEEEC--CCCCCCCCCCCHHHHHHHHHH--------------HHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEE
Q ss_conf 7725787412--332446811100122137641--------------005889998876310133105873145411341
Q gi|255764472|r 174 RGVTAFLTIQ--EGCDKFCTFCVVPYTRGIEIS--------------RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237 (469)
Q Consensus 174 ~~~~a~ikI~--~GC~~~CsfC~ip~~RG~~rS--------------r~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y~g 237 (469)
+...||+--. .||-..|+|| |++|+. .| ++++++++....-+.. .+.|.+.-. +| .
T Consensus 27 ~~~ta~l~t~~~~~c~~~ca~c--~~ar~s-~a~p~~~~lsRv~w~~v~l~~~~~~~~~~~g~-~~rici~~i---~~-p 98 (339)
T COG2516 27 RPTTAYLMTTYPGGCIADCAYC--PQARSS-TANPPKKVLSRVEWPAVALEEVLKRLFYDLGN-FKRICIQQI---AY-P 98 (339)
T ss_pred CCCEEEEEEECCCCEEECHHHC--HHHHHC-CCCCCCCEEEECCCCCCHHHHHHHHHHHHHCC-CCCCCCEEE---CC-C
T ss_conf 5505665662278566465547--355523-45887503663266200078777676665402-144411000---25-5
Q ss_pred CCCCCCCCCCCHHHHHHHCCCCCCCCCCC-CCCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHC----CCCCC
Q ss_conf 13444310002167886204443001354-42100010003665202211122013321114578998730----33344
Q gi|255764472|r 238 KGLDGEKCTFSDLLYSLSEIKGLVRLRYT-TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN----RRHTA 312 (469)
Q Consensus 238 ~~~~~~~~~l~~Ll~~l~~i~~~~riR~~-s~~P~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~----R~~~~ 312 (469)
+-+ ..+...++++.--.+++ +-++ -+.+....+++.+. .+.+ ..++.+.+...+..+++... -+|+.
T Consensus 99 ~~~----~d~~~i~~~~~~~~~~~-itiseci~~~~~~~~l~e~-~klg--~d~l~V~~daa~~~~~e~v~~~s~s~~S~ 170 (339)
T COG2516 99 RAL----NDLKLILERLHIRLGDP-ITISECITAVSLKEELEEY-RKLG--ADYLGVAEDAANEELFEKVRKTSGSPHSW 170 (339)
T ss_pred CCC----CHHHHHHHHHHHCCCCC-EEHHHHHHCCCCHHHHHHH-HHCC--HHHHHHHHHHCCHHHHHHHHHCCCCCCCH
T ss_conf 423----01666436651024785-0120233024516878998-8542--35535788750777899987415898718
Q ss_pred CHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEECCCHHHHHCCCCCCHHHHHHHHH
Q ss_conf 11467899987401344320000013522012478988633221011100200001112012321436889899999999
Q gi|255764472|r 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLL 392 (469)
Q Consensus 313 e~~~~~i~~~r~~~p~~~i~tdiIvGfPgETeedf~~Tl~~i~~~~~~~~~vf~yS~r~gT~Aa~m~~qV~~~vk~~R~~ 392 (469)
+.+.+.++++-.+++.-....-+||| =||||+|.-+|+..+++-.- .+|.|.|.|..||. |++.-|..+-.-|-.
T Consensus 171 e~~~~~l~~~~~~~~k~rv~ihliVg-lGesD~~~ve~~~~v~~~g~-~v~Lfaf~P~~gt~---me~r~~~pve~Yrk~ 245 (339)
T COG2516 171 ERYWEFLEKVAEAFGKGRVGIHLIVG-LGESDKDIVETIKRVRKRGG-IVSLFAFTPLKGTQ---MENRKPPPVERYRKI 245 (339)
T ss_pred HHHHHHHHHHHHHHCCCCCCEEEEEC-CCCCHHHHHHHHHHHHHCCC-EEEEEEECCCCCCC---CCCCCCCCHHHHHHH
T ss_conf 88999999999985467745157960-48756899999999985586-48999864655664---457899868999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 999999999999999857978999984
Q gi|255764472|r 393 CLQKKLREQQVSFNDACVGQIIEVLIE 419 (469)
Q Consensus 393 ~l~~~~~~~~~~~~~~~iG~~~~Vlve 419 (469)
.+..-.-+........+.|-...-||+
T Consensus 246 q~a~yli~~G~v~~~~~~fde~g~lI~ 272 (339)
T COG2516 246 QVARYLIGNGEVDLEDFEFDEFGNLID 272 (339)
T ss_pred HHHHHHHHCCCCCHHHCCCCCCCCEEC
T ss_conf 999999734865554404532135103
No 71
>COG1244 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=98.27 E-value=1.3e-05 Score=61.58 Aligned_cols=170 Identities=13% Similarity=0.218 Sum_probs=114.8
Q ss_pred CEEEEEECCCCCCC----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC-C--CCEEEEECCCCCEEEECCCCCCCCCCC
Q ss_conf 25787412332446----8111001221376410058899988763101-3--310587314541134113444310002
Q gi|255764472|r 176 VTAFLTIQEGCDKF----CTFCVVPYTRGIEISRSLSQVVDEARKLIDN-G--VCEITLLGQNVNAWRGKGLDGEKCTFS 248 (469)
Q Consensus 176 ~~a~ikI~~GC~~~----CsfC~ip~~RG~~rSr~~~~Iv~ei~~l~~~-G--~kEi~L~g~d~~~Y~g~~~~~~~~~l~ 248 (469)
...+++ ++||-+. |+.|..|.- +.....|.+++++++.+.... - ..+.++-==.-|+| -++-...+....
T Consensus 48 l~vILr-T~GC~w~~~~gC~MCgY~~d-~~~~~vs~E~l~~qfd~~~~k~~~~~~~~~vkIFTSGSF-LD~~EVP~e~R~ 124 (358)
T COG1244 48 LTVILR-TRGCRWYREGGCYMCGYPAD-SAGEPVSEENLINQFDEAYSKYEGKFDEFVVKIFTSGSF-LDPEEVPREARR 124 (358)
T ss_pred EEEEEE-CCCCCEECCCCCCEECCCCC-CCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCC-CCHHHCCHHHHH
T ss_conf 999982-68832220587224265546-688989889999999999997224478754999715665-892448879999
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCC--CCCCCCEEEEEECCCHHHH-HHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 167886204443001354421000100036652022--1112201332111457899-8730333441146789998740
Q gi|255764472|r 249 DLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQSGSDRIL-KSMNRRHTAYEYRQIIDRIRSV 325 (469)
Q Consensus 249 ~Ll~~l~~i~~~~riR~~s~~P~~~~~~li~~~~~~--~~i~~~lhlpiQSgs~~vL-k~M~R~~~~e~~~~~i~~~r~~ 325 (469)
.+++.|++.+.+.++-+-| -|..+++|-++.+.+. ++.. -+-++|+|.+|+|- ..||++.|-++|.++++.+|++
T Consensus 125 ~Il~~is~~~~v~~vvvES-RpE~I~eE~l~e~~~il~gk~~-EvaIGLETanD~ire~sINKGftF~df~~A~~~ir~~ 202 (358)
T COG1244 125 YILERISENDNVKEVVVES-RPEFIREERLEEITEILEGKIV-EVAIGLETANDKIREDSINKGFTFEDFVRAAEIIRNY 202 (358)
T ss_pred HHHHHHHHCCCEEEEEEEC-CCHHCCHHHHHHHHHHHCCCEE-EEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHC
T ss_conf 9999975236602787604-7101278999999986089538-9997124474889987651388689999999999974
Q ss_pred CCCCCCCEEEECCCCCCHHH----HHHHHHH
Q ss_conf 13443200000135220124----7898863
Q gi|255764472|r 326 RPDIAISSDFIVGFPGETDD----DFRATMD 352 (469)
Q Consensus 326 ~p~~~i~tdiIvGfPgETee----df~~Tl~ 352 (469)
++.+.|-+++--|-=||. |...|++
T Consensus 203 --g~~vktYlllKP~FlSE~eAI~D~i~Si~ 231 (358)
T COG1244 203 --GAKVKTYLLLKPPFLSEKEAIEDVISSIV 231 (358)
T ss_pred --CCCEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf --97515788831653476889999999999
No 72
>PRK09234 fbiC FO synthase; Reviewed
Probab=98.24 E-value=6.4e-06 Score=63.95 Aligned_cols=194 Identities=16% Similarity=0.228 Sum_probs=118.8
Q ss_pred EEEEECCCCCCCCCCCCHHHH--HHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC--CEEE-------ECCCCCCCCC
Q ss_conf 787412332446811100122--1376410058899988763101331058731454--1134-------1134443100
Q gi|255764472|r 178 AFLTIQEGCDKFCTFCVVPYT--RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNV--NAWR-------GKGLDGEKCT 246 (469)
Q Consensus 178 a~ikI~~GC~~~CsfC~ip~~--RG~~rSr~~~~Iv~ei~~l~~~G~kEi~L~g~d~--~~Y~-------g~~~~~~~~~ 246 (469)
.||+..+=|-..|.||.-... ++...-.++++|++-++.-.+.|++|-.+|-=|- ..|. ..++...-..
T Consensus 77 VFiPLT~lCrd~C~YCtF~~~p~~~~~~~l~~deV~~ia~~g~~~GC~EALftlGd~PE~r~~~a~~~L~~~G~~st~~Y 156 (846)
T PRK09234 77 VFIPLTRLCRDRCHYCTFATVPGKLRAAYLSPDEVLDIARAGAAAGCKEALFTLGDRPEDRWPEAREWLDERGYDSTLDY 156 (846)
T ss_pred CCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEHHCCCCCHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 43143068763688776436886556777899999999999998699561314688867748999999997198459999
Q ss_pred CCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHH--HCCCCCCCH-HHHHHHHHH
Q ss_conf 02167886204443001354421000100036652022111220133211145789987--303334411-467899987
Q gi|255764472|r 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS--MNRRHTAYE-YRQIIDRIR 323 (469)
Q Consensus 247 l~~Ll~~l~~i~~~~riR~~s~~P~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~--M~R~~~~e~-~~~~i~~~r 323 (469)
+.++++.+.+-.|+ +--+||-.++.+-+. ..+.+.+..-|=++|.|++.+.. |--..++++ -...+..|.
T Consensus 157 l~~~~~~vl~etgL----LPH~N~G~ls~~el~---~Lk~v~~SmGlMLEs~s~rL~~~~g~~H~~sP~K~P~~Rl~tl~ 229 (846)
T PRK09234 157 VRAMAIRVLEETGL----LPHLNPGVMSWSELA---RLKPVAPSMGMMLETTSRRLFETKGGAHYGSPDKDPAVRLRVLE 229 (846)
T ss_pred HHHHHHHHHHHCCC----CCCCCCCCCCHHHHH---HHHCCCCCCEEEECCCCHHHCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 99999999986598----887898889999999---85236875204511034644247898888999989899999999
Q ss_pred HH-CCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCC-----HHEEECCCHHHHHCC
Q ss_conf 40-134432000001352201247898863322101110020-----000111201232143
Q gi|255764472|r 324 SV-RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS-----FKYSPRLGTPGSNML 379 (469)
Q Consensus 324 ~~-~p~~~i~tdiIvGfPgETeedf~~Tl~~i~~~~~~~~~v-----f~yS~r~gT~Aa~m~ 379 (469)
.+ .-.+-|+|-+.+|. |||.+|-.++|.-+.++.-.+-|| =.|.|.|||+....+
T Consensus 230 ~AG~l~iPfTTGiLiGI-GEt~~er~~sL~ai~~~h~~yghIQEVIiQNF~~K~~t~m~~~~ 290 (846)
T PRK09234 230 DAGRLSVPFTTGILIGI-GETLAERAESLFAIRKSHREYGHIQEVIVQNFRAKPDTAMAGAP 290 (846)
T ss_pred HHHCCCCCEEEEEEECC-CCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCC
T ss_conf 85404797321113257-79999999999999999997399657983688899898686799
No 73
>pfam01938 TRAM TRAM domain. This small domain has no known function. However it may perform a nucleic acid binding role (Bateman A. unpublished observation).
Probab=98.18 E-value=8.1e-06 Score=63.16 Aligned_cols=59 Identities=36% Similarity=0.492 Sum_probs=52.4
Q ss_pred HHHCCCEEEEEEECCCCCCCEEEEECCCCCEEEECCCCCCCCCEEEEEEEEEECCEEEEEEE
Q ss_conf 98579789999842568086899998786288973887676888999999830873899994
Q gi|255764472|r 407 DACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 (469)
Q Consensus 407 ~~~iG~~~~Vlve~~~~~~~~~~G~t~~~~~V~~~~~~~~~G~~v~V~I~~~~~~~L~G~vi 468 (469)
++++|++++|+||+.+ .+|..+||++++..|.+++. .+|++++|+|+++..++|.|+++
T Consensus 1 ~~~vG~~~~V~Ie~~~-~~G~gigr~~~g~~vfv~g~--~pGe~V~v~I~~~~~~~~~g~iv 59 (59)
T pfam01938 1 RKYVGQTQEVLVEGLG-SNGEGIGRTDNGKVVFVPGA--LPGEFVEVKITKAKRNYLRGELL 59 (59)
T ss_pred CCCCCCEEEEEEEECC-CCCCEEEEECCCEEEEECCC--CCCCEEEEEEEECCCCCEEEEEC
T ss_conf 9645879999998557-79978999629969996799--99999999999830782999989
No 74
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=98.16 E-value=4.8e-05 Score=57.42 Aligned_cols=183 Identities=17% Similarity=0.237 Sum_probs=124.8
Q ss_pred EEEE---CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCCC--CCCCCHHHHH
Q ss_conf 8741---2332446811100122137641005889998876310133105873145411341134443--1000216788
Q gi|255764472|r 179 FLTI---QEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE--KCTFSDLLYS 253 (469)
Q Consensus 179 ~ikI---~~GC~~~CsfC~ip~~RG~~rSr~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y~g~~~~~~--~~~l~~Ll~~ 253 (469)
|+.| ..=|...|.-|.-.+.++ ..+..-++++.+...+.+.|+.-+.|.| |.+-++. -+.|.+++++
T Consensus 11 ~~sISVTG~yC~lnC~HCg~~~L~~-Mi~vt~~~l~k~~~el~kkGy~g~llSG-------Gm~srg~VPl~kf~d~lK~ 82 (275)
T COG1856 11 FISISVTGAYCSLNCPHCGRHYLEH-MIKVTTKSLLKRCMELEKKGYEGCLLSG-------GMDSRGKVPLWKFKDELKA 82 (275)
T ss_pred CCEEEEECCCEEECCHHHHHHHHHH-HCCCCHHHHHHHHHHHHHCCCEEEEEEC-------CCCCCCCCCHHHHHHHHHH
T ss_conf 7237886363575381777999987-5253257788899999845760589757-------8687997428999999999
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCC-CCCCCEEEEEECCCHHHHHHHCC-CCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf 62044430013544210001000366520221-11220133211145789987303-33441146789998740134432
Q gi|255764472|r 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNR-RHTAYEYRQIIDRIRSVRPDIAI 331 (469)
Q Consensus 254 l~~i~~~~riR~~s~~P~~~~~~li~~~~~~~-~i~~~lhlpiQSgs~~vLk~M~R-~~~~e~~~~~i~~~r~~~p~~~i 331 (469)
+.+-.|+.- ..|--.++++.++.++... .+. .+++ -|++.++|+.=. +.++++|++.+..+++. ++.+
T Consensus 83 lke~~~l~i----naHvGfvdE~~~eklk~~~vdvv-sLDf---vgDn~vIk~vy~l~ksv~dyl~~l~~L~e~--~irv 152 (275)
T COG1856 83 LKERTGLLI----NAHVGFVDESDLEKLKEELVDVV-SLDF---VGDNDVIKRVYKLPKSVEDYLRSLLLLKEN--GIRV 152 (275)
T ss_pred HHHHHCEEE----EEEEEECCHHHHHHHHHHCCCEE-EEEE---CCCHHHHHHHHCCCCCHHHHHHHHHHHHHC--CCEE
T ss_conf 877537489----99851001788999987168689-9861---277489999976886377778899999970--9425
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEECCCHHHHHCC
Q ss_conf 000001352201247898863322101110020000111201232143
Q gi|255764472|r 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 (469)
Q Consensus 332 ~tdiIvGfPgETeedf~~Tl~~i~~~~~~~~~vf~yS~r~gT~Aa~m~ 379 (469)
.--+|+|.-+---+-=.+.++++.++.+|.+-+--+-|-|||.....+
T Consensus 153 vpHitiGL~~gki~~e~kaIdiL~~~~~DalVl~vliPtpGtkm~~~~ 200 (275)
T COG1856 153 VPHITIGLDFGKIHGEFKAIDILVNYEPDALVLVVLIPTPGTKMGNSP 200 (275)
T ss_pred CEEEEEEECCCCCCCHHHHHHHHHCCCCCEEEEEEEECCCCHHCCCCC
T ss_conf 305999731685233387889986079973999998138850105779
No 75
>PRK05926 hypothetical protein; Provisional
Probab=98.16 E-value=1.4e-05 Score=61.45 Aligned_cols=182 Identities=13% Similarity=0.127 Sum_probs=113.2
Q ss_pred EEECCCCCCCCCCCCHHHHHHH--HHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCCCHHHHHHHCC
Q ss_conf 7412332446811100122137--64100588999887631013310587314541134113444310002167886204
Q gi|255764472|r 180 LTIQEGCDKFCTFCVVPYTRGI--EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257 (469)
Q Consensus 180 ikI~~GC~~~CsfC~ip~~RG~--~rSr~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y~g~~~~~~~~~l~~Ll~~l~~i 257 (469)
|....=|...|.||.--...|. -...++|+|++.++. ++.|+.||.+.|=--- ++ .-..+.++++.+.+.
T Consensus 73 INyTNvC~~~C~FCaF~r~~~~~~aY~ls~eei~~~v~e-~~~g~tEv~i~GG~hP-----~l--~~~yY~~l~~~ik~~ 144 (371)
T PRK05926 73 LYPTNFCDFNCTFCSFYAKPGDPKGWFYTPDQLIQSIQE-IKSPITETHIVAGCFP-----SC--NLAYYEELFSKIKEN 144 (371)
T ss_pred CCCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH-HHCCCCEEEEECCCCC-----CC--CHHHHHHHHHHHHHH
T ss_conf 652113426792477636899976523899999999999-8759968997178898-----99--869999999999975
Q ss_pred CCCCCCCCCCCCCCCC----------CCHHHHHHCCCCCC-CCCEEEEEECCCHHHHHHHCC-CCCCCHHHHHHHHHHHH
Q ss_conf 4430013544210001----------00036652022111-220133211145789987303-33441146789998740
Q gi|255764472|r 258 KGLVRLRYTTSHPRDM----------SDCLIKAHGDLDVL-MPYLHLPVQSGSDRILKSMNR-RHTAYEYRQIIDRIRSV 325 (469)
Q Consensus 258 ~~~~riR~~s~~P~~~----------~~~li~~~~~~~~i-~~~lhlpiQSgs~~vLk~M~R-~~~~e~~~~~i~~~r~~ 325 (469)
-.. +.+-..-|.++ .+|.++.+++.+-= .|- =+-+=-+|+|-+.+-. +.+.++|+++.+.+.+.
T Consensus 145 ~P~--v~ihaft~~EI~~~a~~~~~s~~EvL~~Lk~AGL~SlPG--gGAEIl~d~VR~~I~p~K~~~~~Wlei~~~AH~l 220 (371)
T PRK05926 145 FPD--IHIKALTAIEYAYLSKLDNLPVREVLQTLKIAGLDSIPG--GGAEILVDEIRETLAPGRLSSQDFLEIHKTAHSL 220 (371)
T ss_pred CCC--CCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCC--CCHHHCCHHHHHHHCCCCCCHHHHHHHHHHHHHC
T ss_conf 898--741448899999999980999999999999838777888--7324347789997588989899999999999986
Q ss_pred CCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEEC----CCHHHH
Q ss_conf 134432000001352201247898863322101110020000111----201232
Q gi|255764472|r 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR----LGTPGS 376 (469)
Q Consensus 326 ~p~~~i~tdiIvGfPgETeedf~~Tl~~i~~~~~~~~~vf~yS~r----~gT~Aa 376 (469)
|+.-+++++.|+ .||.++.-+-|.-+++++=.-.+...|-|- .+|+-.
T Consensus 221 --Gi~t~ATMmyGH-iEt~~~rv~HL~~lR~lQdeTgGF~~FIpl~F~p~nt~l~ 272 (371)
T PRK05926 221 --GIPSNATMLCYH-RETPEDIVTHMSKLRDLQDETLGFKNFILLKFASENNALG 272 (371)
T ss_pred --CCCCCEEEECCC-CCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHH
T ss_conf --997520465246-6999999999999999887529942997244247788220
No 76
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=98.12 E-value=9.6e-05 Score=55.15 Aligned_cols=213 Identities=16% Similarity=0.192 Sum_probs=109.7
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHH--HHHHHHHHHHHHHHHHH---HHCCCCEEEEECCCCCE
Q ss_conf 44333334575677772578741233244681110012213--76410058899988763---10133105873145411
Q gi|255764472|r 160 FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG--IEISRSLSQVVDEARKL---IDNGVCEITLLGQNVNA 234 (469)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~a~ikI~~GC~~~CsfC~ip~~RG--~~rSr~~~~Iv~ei~~l---~~~G~kEi~L~g~d~~~ 234 (469)
.+..+..++|..| +.-|+ .|||.+|-||.=|-+.- .-+..+++++++++... .+..--=|.++|
T Consensus 10 i~~~s~~DGPGiR---t~vFl---~GC~lrC~~ChNpet~~~~~g~~~t~~el~~~i~~~~~f~~~sgGGVT~SG----- 78 (246)
T PRK11145 10 FESCGTVDGPGIR---FITFM---QGCLMRCLYCHNRDTWDTHGGKEVTVEELMKEVVTYRHFMNASGGGVTASG----- 78 (246)
T ss_pred EEEECCCCCCCEE---EEEEE---CCCCCCCCCCCCHHHHCCCCCEECCHHHHHHHHHHHHHHHHHCCCEEEEEC-----
T ss_conf 6785737589838---99980---687788998979678486799875599999999987999860596389869-----
Q ss_pred EEECCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCH
Q ss_conf 34113444310002167886204443001354421000100036652022111220133211145789987303334411
Q gi|255764472|r 235 WRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYE 314 (469)
Q Consensus 235 Y~g~~~~~~~~~l~~Ll~~l~~i~~~~riR~~s~~P~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R~~~~e~ 314 (469)
|.-+ ....-+.+|++.+.+ .|+...--++-+.... ++.++.+... +..+-+-+-+.|+..-+.+- +.+.+.
T Consensus 79 --GEPl-lq~ef~~~l~~~~k~-~gi~taidTnG~~~~~-~~~~~~ll~~---~D~vl~DiK~~d~~~h~~~t-G~~n~~ 149 (246)
T PRK11145 79 --GEAI-LQAEFVRDWFRACKK-EGIHTCLDTNGFVRRY-DPVIDELLDV---TDLVMLDLKQMNDEIHQNLV-GVSNHR 149 (246)
T ss_pred --CCEE-CCHHHHHHHHHHHHH-CCCCEEEECCCCCCCC-HHHHHHHHHH---CCEEEECCCCCCHHHHHHHH-CCCCHH
T ss_conf --9512-689999999999988-7998999899998755-7999998863---23457646668989999998-889189
Q ss_pred HHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHH-HHHCCCHHEEEC------CCHHHHHCCCC-CCHHH
Q ss_conf 46789998740134432000001352201247898863322101-110020000111------20123214368-89899
Q gi|255764472|r 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG-YAQAFSFKYSPR------LGTPGSNMLEQ-VDENV 386 (469)
Q Consensus 315 ~~~~i~~~r~~~p~~~i~tdiIvGfPgETeedf~~Tl~~i~~~~-~~~~~vf~yS~r------~gT~Aa~m~~q-V~~~v 386 (469)
+++.++.+.+.-..+.+++-+|-|| ..++|+.+.+.+|+++.. ...+++-||-+- .--+.+.|++. .++..
T Consensus 150 iL~nl~~l~~~~~~~~iR~pvIPg~-nD~~e~i~~~a~fl~~l~~v~~v~lLPyH~~G~~Ky~~lg~~Y~~~~~~~~~~e 228 (246)
T PRK11145 150 TLEFARYLAKRNQKTWIRYVVVPGW-TDDDDSAHRLGEFIKDMGNIEKVELLPYHELGKHKWEAMGEEYKLDGVKPPSKE 228 (246)
T ss_pred HHHHHHHHHHCCCCEEEEEEEECCC-CCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHCCCCCCCCCCCCCCHH
T ss_conf 9999999997899789988677998-899999999999999769976366578875665479983999888898997999
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q gi|255764472|r 387 KAERLLC 393 (469)
Q Consensus 387 k~~R~~~ 393 (469)
.-+|++.
T Consensus 229 ~l~~~~~ 235 (246)
T PRK11145 229 TMERIKG 235 (246)
T ss_pred HHHHHHH
T ss_conf 9999999
No 77
>KOG2672 consensus
Probab=98.10 E-value=1.1e-05 Score=62.17 Aligned_cols=179 Identities=16% Similarity=0.224 Sum_probs=104.9
Q ss_pred EEEE-ECCCCCCCCCCCCHHHHHHH--HHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCCCHHHHHH
Q ss_conf 7874-12332446811100122137--64100588999887631013310587314541134113444310002167886
Q gi|255764472|r 178 AFLT-IQEGCDKFCTFCVVPYTRGI--EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254 (469)
Q Consensus 178 a~ik-I~~GC~~~CsfC~ip~~RG~--~rSr~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y~g~~~~~~~~~l~~Ll~~l 254 (469)
|-|- ..+-|-+.|.||+++.+|-+ +---.+++. ++....-|.--|+||++|-..- -++....+++-++.|
T Consensus 112 ATIMlmGDTCTRGCRFCsVKTsR~PpPlDp~EPeNT---AeAIasWgl~YiVlTSVDRDDl----pDgGa~HiAkTVq~i 184 (360)
T KOG2672 112 ATIMLMGDTCTRGCRFCSVKTSRNPPPLDPNEPENT---AEAIASWGLDYIVLTSVDRDDL----PDGGANHIAKTVQKI 184 (360)
T ss_pred EEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCH---HHHHHHCCCCEEEEEECCCCCC----CCCCHHHHHHHHHHH
T ss_conf 898863474346752012103788967799986448---9999971888699971145647----675227899999999
Q ss_pred HCCCCCCCCCCCCCCCCCC-CCHHHHHHCCCCCCCCCEEE--EEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf 2044430013544210001-00036652022111220133--21114578998730333441146789998740134432
Q gi|255764472|r 255 SEIKGLVRLRYTTSHPRDM-SDCLIKAHGDLDVLMPYLHL--PVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAI 331 (469)
Q Consensus 255 ~~i~~~~riR~~s~~P~~~-~~~li~~~~~~~~i~~~lhl--piQSgs~~vLk~M~R~~~~e~~~~~i~~~r~~~p~~~i 331 (469)
.+.... |-+-.+-|+.- +-+.++.++.++ +=-|-|= -++.-.+-|- -|+.+..+-+.+++..++..|++.-
T Consensus 185 K~k~p~--ilvE~L~pDF~Gd~~~Ve~va~SG-LDV~AHNvETVe~Ltp~VR---D~RA~yrQSL~VLk~aK~~~P~lit 258 (360)
T KOG2672 185 KEKAPE--ILVECLTPDFRGDLKAVEKVAKSG-LDVYAHNVETVEELTPFVR---DPRANYRQSLSVLKHAKEVKPGLIT 258 (360)
T ss_pred HHHCCC--CCHHHCCCCCCCCHHHHHHHHHCC-CCCEECCHHHHHHCCHHHC---CCCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf 852842--321324755457347999998537-4000011140876023331---8540167769999987751887012
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEECC
Q ss_conf 0000013522012478988633221011100200001112
Q gi|255764472|r 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL 371 (469)
Q Consensus 332 ~tdiIvGfPgETeedf~~Tl~~i~~~~~~~~~vf~yS~r~ 371 (469)
.|.||.|. |||+|...+|++-+++...|.+..-.| .+|
T Consensus 259 ktsiMlgl-getdeei~~tl~dLr~~~vdv~t~gqy-m~p 296 (360)
T KOG2672 259 KTSIMLGL-GETDEEIKQTLKDLRAADVDVVTFGQY-MQP 296 (360)
T ss_pred HHHHHHCC-CCCHHHHHHHHHHHHHCCCCEEECCCC-CCC
T ss_conf 02100026-788899999999999719708840000-577
No 78
>TIGR00510 lipA lipoic acid synthetase; InterPro: IPR003698 Lipoic acid is a covalently bound disulphide-containing cofactor required for function of the pyruvate dehydrogenase, alpha-ketoglutarate dehydrogenase, and glycine cleavage enzyme complexes of Escherichia coli. Two genes, lipA and lipB, are involved in lipoic acid biosynthesis or metabolism. LipA is required for the insertion of the first sulphur into the octanoic acid backbone. LipB functions downstream of LipA, but its role in lipoic acid metabolism remains unclear . Lipoate synthase (or lipoic acid synthetase) catalyses the formation of alpha-(+)-lipoic acid, required for lipoate biosynthesis.; GO: 0016992 lipoate synthase activity, 0009107 lipoate biosynthetic process.
Probab=98.03 E-value=1.2e-05 Score=62.00 Aligned_cols=219 Identities=17% Similarity=0.227 Sum_probs=139.2
Q ss_pred CCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCCCHH
Q ss_conf 67777257874123324468111001221376410058899988763101331058731454113411344431000216
Q gi|255764472|r 171 NRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250 (469)
Q Consensus 171 ~~~~~~~a~ikI~~GC~~~CsfC~ip~~RG~~rSr~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y~g~~~~~~~~~l~~L 250 (469)
....++..|+-+.+-|.++|.||.+.+.|-+.. -.+++-..-++...+.|.+.+++|.+|-.... ++....|.+.
T Consensus 64 d~~~~~~~~~~lg~~c~~~c~fc~~~~~~~p~~-pdp~ep~~~~~~~~~~~l~~~~~~~~~~ddl~----dgg~~~~~~~ 138 (310)
T TIGR00510 64 DKSHGTATFLLLGDICTRRCPFCDVAHGRNPLP-PDPEEPEKLAETIKDLGLKYVVITSVDRDDLE----DGGAGHLAEC 138 (310)
T ss_pred CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCC-CCCCCHHHHHHHHHHHCCCEEEEEECCCCCCC----CCCHHHHHHH
T ss_conf 322101244323136522476310224677898-87332256899998730553577512200023----4534678999
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCC-CCCCCEEEEEECCCHHHHHHHC-CCCCCCHHHHHHHHHHHHCCC
Q ss_conf 78862044430013544210001000366520221-1122013321114578998730-333441146789998740134
Q gi|255764472|r 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMN-RRHTAYEYRQIIDRIRSVRPD 328 (469)
Q Consensus 251 l~~l~~i~~~~riR~~s~~P~~~~~~li~~~~~~~-~i~~~lhlpiQSgs~~vLk~M~-R~~~~e~~~~~i~~~r~~~p~ 328 (469)
++.+.+......+.....+-..-....++.+.+.+ .++.| .++ .-+++-..++ |+.+...-+.+++.+++..|.
T Consensus 139 ~~~~~~~~p~~~~e~l~~df~g~~~~~~~~~~~~~~~~~~h---n~e-~~~~~~~~~~~~~~~y~~~l~~l~~~~~~~p~ 214 (310)
T TIGR00510 139 VEALREKLPNIKIETLVPDFRGRDLKALDILLDAPPDVYNH---NLE-TVPRLTPFVRPRGATYRWSLKLLERAKETLPN 214 (310)
T ss_pred HHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCHHHHHC---CHH-HHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 99987524541321001320104689999886246134530---112-33454333301332168899999998875032
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEECCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4320000013522012478988633221011100200001112012321436889899999999999999999999
Q gi|255764472|r 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVS 404 (469)
Q Consensus 329 ~~i~tdiIvGfPgETeedf~~Tl~~i~~~~~~~~~vf~yS~r~gT~Aa~m~~qV~~~vk~~R~~~l~~~~~~~~~~ 404 (469)
+...+.+++|. |||+++..++++-++....+.+.+-.|- +|.-. .+ .|...+.-+....+++...+..+.
T Consensus 215 ~~~k~g~~~gl-ge~~~~~~~~~~dl~~~g~~~~~~g~y~-~p~~~--h~--p~~~y~~p~~fd~~~~~~~~~gf~ 284 (310)
T TIGR00510 215 LPTKSGLMVGL-GETNEEILQTLKDLRDHGVTVLTLGQYL-RPSRR--HL--PVKRYVSPEEFDYWKERALELGFL 284 (310)
T ss_pred CCCCCCCEECC-CCCHHHHHHHHHHHHHCCCCEEECCCHH-CCHHH--CC--CCHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 10112201104-7524789999998986374056501010-52001--25--300025740246788777651024
No 79
>TIGR00433 bioB biotin synthase; InterPro: IPR002684 Biotin synthase 2.8.1.6 from EC works with flavodoxin, S-adenosylmethionine, and possibly cysteine to catalyze the last step of the biotin biosynthetic pathway. The reaction consists of the introduction of a sulphur atom into dethiobiotin, thus requiring activation of C-H bonds . Biotin (vitamin H) is a prosthetic group in enzymes catalysing carboxylation and transcarboxylation reactions . Biotin synthase from Escherichia coli is a homodimer of 76 kDa, with each polypeptide chain carrying an oxygen-sensitive (4Fe-4S) cluster, probably ligated by three cysteines of a CXXXCXXC box conserved among all known BioB sequences and a fourth still not identified ligand. BioB displays a pyridoxal phosphate-dependent cysteine desulphurase activity, which allows mobilization of the sulphur atom from free cysteine . ; GO: 0004076 biotin synthase activity, 0009102 biotin biosynthetic process.
Probab=98.02 E-value=2.6e-05 Score=59.42 Aligned_cols=187 Identities=19% Similarity=0.265 Sum_probs=123.2
Q ss_pred EEEEE-CCCCCCCCCCCC--HHH-----------HHHH-HHHHHHH--------------HHHHHHHHHHHCCC------
Q ss_conf 78741-233244681110--012-----------2137-6410058--------------89998876310133------
Q gi|255764472|r 178 AFLTI-QEGCDKFCTFCV--VPY-----------TRGI-EISRSLS--------------QVVDEARKLIDNGV------ 222 (469)
Q Consensus 178 a~ikI-~~GC~~~CsfC~--ip~-----------~RG~-~rSr~~~--------------~Iv~ei~~l~~~G~------ 222 (469)
+++.| |=+|+=.|.||. ..+ .... .+-+.++ +|++|++.+.+.|+
T Consensus 33 ~i~N~KSG~C~EDC~YCsQSs~~~CniPiYPlk~~~~~~~~~~~~~DeCskisssier~k~~l~eA~~a~~~G~PnrGfP 112 (350)
T TIGR00433 33 TIMNIKSGGCPEDCGYCSQSSRSKCNIPIYPLKDTGLPIERLKKVDDECSKISSSIEREKEILEEARAAKAAGAPNRGFP 112 (350)
T ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 11012218576677678855526688622456674178998876765432222111111378999999997087888853
Q ss_pred ---CEEEEECCCCCEEEECCCCCCC---CCCCHHHHHHHCC-----CCCCC-CCCCCCCCCCCCCHHHHHHCCCCCCCCC
Q ss_conf ---1058731454113411344431---0002167886204-----44300-1354421000100036652022111220
Q gi|255764472|r 223 ---CEITLLGQNVNAWRGKGLDGEK---CTFSDLLYSLSEI-----KGLVR-LRYTTSHPRDMSDCLIKAHGDLDVLMPY 290 (469)
Q Consensus 223 ---kEi~L~g~d~~~Y~g~~~~~~~---~~l~~Ll~~l~~i-----~~~~r-iR~~s~~P~~~~~~li~~~~~~~~i~~~ 290 (469)
..+-|. ++ |++..... ..|.+.+.++.++ -|++- .-+|.+ +++=++.+++.+ |=.|
T Consensus 113 lWv~rFClv----as--GR~~~~~~~~dref~~~v~~~~~~~~~ee~GL~~C~~LG~l-----~~eqa~~LKdAG-ld~Y 180 (350)
T TIGR00433 113 LWVTRFCLV----AS--GRGPKDRESKDREFIEIVEAVVKIVEEEELGLKTCATLGLL-----DPEQAKQLKDAG-LDRY 180 (350)
T ss_pred EEECCEEEE----EC--CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHCCCCC-----CHHHHHHHHHCC-CCCC
T ss_conf 035014655----41--78888777422028899999999975200371223203776-----889999888638-8611
Q ss_pred EEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHH--HHHHCCCHHEE
Q ss_conf 1332111457899873033344114678999874013443200000135220124789886332210--11100200001
Q gi|255764472|r 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI--GYAQAFSFKYS 368 (469)
Q Consensus 291 lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~~~r~~~p~~~i~tdiIvGfPgETeedf~~Tl~~i~~~--~~~~~~vf~yS 368 (469)
-| =+...|.+--+..==.||.+|=+..|+++|++ |+..=|-=|+|. |||.||.-+.+.-|+++ .++-+=|-.+-
T Consensus 181 NH-Nl~~TS~~~y~~I~sThty~DR~~T~~~~k~a--Gl~~CsGGI~Gl-gEt~~DrI~l~~~L~~L~p~peSvPiN~L~ 256 (350)
T TIGR00433 181 NH-NLDETSQEYYSKIISTHTYDDRVDTVKNAKEA--GLKVCSGGILGL-GETWEDRIGLALALANLSPEPESVPINFLV 256 (350)
T ss_pred CC-CHHHHHHHHCCCCEECCCHHHHHHHHHHHHHC--CCCCCCCCEECC-CCCHHHHHHHHHHHHCCCCCCCEECCCCEE
T ss_conf 16-73678787668734323077679999999973--887244623458-988899999999975277678701113202
Q ss_pred ECCCHHHH-HCCC
Q ss_conf 11201232-1436
Q gi|255764472|r 369 PRLGTPGS-NMLE 380 (469)
Q Consensus 369 ~r~gT~Aa-~m~~ 380 (469)
++|||||+ ++.+
T Consensus 257 ~~~GTP~~E~L~~ 269 (350)
T TIGR00433 257 KIEGTPAYEKLAD 269 (350)
T ss_pred CCCCCCCHHHHCC
T ss_conf 6888853443158
No 80
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=97.98 E-value=0.00045 Score=50.12 Aligned_cols=190 Identities=18% Similarity=0.263 Sum_probs=109.0
Q ss_pred CCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC-C------CCEEEEECCCCCEEEECCCCCCCCC
Q ss_conf 77257874123324468111001221376410058899988763101-3------3105873145411341134443100
Q gi|255764472|r 174 RGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-G------VCEITLLGQNVNAWRGKGLDGEKCT 246 (469)
Q Consensus 174 ~~~~a~ikI~~GC~~~CsfC~ip~~RG~~rSr~~~~Iv~ei~~l~~~-G------~kEi~L~g~d~~~Y~g~~~~~~~~~ 246 (469)
.+...-|.-|-||+-.|+||.+... |..|--+.++|++|+....+. | +..|++. |.+=+ -.+
T Consensus 99 ~r~tlCVSsQvGC~~~C~FCaTg~~-G~~RNLs~~EIv~Qv~~~~~~~~~~~~~~i~NVV~M--------GMGEP--l~N 167 (349)
T COG0820 99 DRNTLCVSSQVGCPVGCTFCATGQG-GLNRNLSAGEIVEQVLLAAKALGEDFGRRISNVVFM--------GMGEP--LLN 167 (349)
T ss_pred CCCEEEEECCCCCCCCCCEECCCCC-CCEECCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEE--------CCCCH--HHH
T ss_conf 9856998567786788872645666-601121799999999999986176656436469996--------47860--666
Q ss_pred CCHHHHHHHCC---CCCCC-CCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCHHH---HHHHCCCCCCCHHHHHH
Q ss_conf 02167886204---44300-1354421000100036652022111220133211145789---98730333441146789
Q gi|255764472|r 247 FSDLLYSLSEI---KGLVR-LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI---LKSMNRRHTAYEYRQII 319 (469)
Q Consensus 247 l~~Ll~~l~~i---~~~~r-iR~~s~~P~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~v---Lk~M~R~~~~e~~~~~i 319 (469)
+..++..+.-+ .|+-- -|-.++-+..+.+.+.++.-+. +=--|-+++.+-++.. |...|++|..++..+.+
T Consensus 168 ~dnV~~a~~i~~~~~G~~ls~R~iTvSTsGi~~~I~~l~~~~--~~v~LAiSLHa~nd~lR~~L~Pink~~~~e~l~~a~ 245 (349)
T COG0820 168 LDNVVKALEIINDDEGLGLSKRRITVSTSGIVPRIRKLADEQ--LGVALAISLHAPNDELRDQLMPINKKYPIEELLEAI 245 (349)
T ss_pred HHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCHHHHHHHHHC--CCEEEEEECCCCCHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf 999999998626766666465179996588757689987516--775899950689989997533236679889999999
Q ss_pred HHHHHHCC-CCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEECCCHHHHHCC
Q ss_conf 99874013-4432000001352201247898863322101110020000111201232143
Q gi|255764472|r 320 DRIRSVRP-DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNML 379 (469)
Q Consensus 320 ~~~r~~~p-~~~i~tdiIvGfPgETeedf~~Tl~~i~~~~~~~~~vf~yS~r~gT~Aa~m~ 379 (469)
+.-...-. -+++-=.++-|.= ...|+.++..++++.++- +++.-||-|-||+. +..+
T Consensus 246 r~Y~~~t~~rVt~EY~Ll~~VN-D~~e~A~~L~~ll~~~~~-~VNLIP~Np~~~~~-y~r~ 303 (349)
T COG0820 246 RYYPEKSGRRVTFEYVLLDGVN-DSLEHAKELAKLLKGIPC-KVNLIPYNPVPGSD-YERS 303 (349)
T ss_pred HHHHHCCCCEEEEEEEECCCCC-CCHHHHHHHHHHHCCCCC-EEEEEECCCCCCCC-CCCC
T ss_conf 8622215966899866204654-888899999998568974-49986068989977-4479
No 81
>COG0535 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=97.96 E-value=0.0003 Score=51.48 Aligned_cols=179 Identities=11% Similarity=0.169 Sum_probs=112.8
Q ss_pred CCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCEEEEECCCCCEEEECCCCCCCCCCCHHHHH
Q ss_conf 72578741233244681110012213764100588999887631013-31058731454113411344431000216788
Q gi|255764472|r 175 GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNG-VCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253 (469)
Q Consensus 175 ~~~a~ikI~~GC~~~CsfC~ip~~RG~~rSr~~~~Iv~ei~~l~~~G-~kEi~L~g~d~~~Y~g~~~~~~~~~l~~Ll~~ 253 (469)
+....+.+..-||-+|.||-.........--+.++..+.+..+.+.| ..-+.++ +|.-+- ...+.++++.
T Consensus 18 p~~~~~~~t~~Cnl~C~~C~~~~~~~~~~el~~~~~~~~~~~~~~~g~~~~v~~~-------gGEPll--~~~~~ei~~~ 88 (347)
T COG0535 18 PLVVGIELTNRCNLACKHCYAEAGKKLPGELSTEEDLRVIDELAELGEIPVVIFT-------GGEPLL--RPDLLEIVEY 88 (347)
T ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEC-------CCCCEE--CCCHHHHHHH
T ss_conf 7379985588768749987724267767735687878999999871884499807-------987333--4579999999
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCHHH-HHHHCCCCCCCHHHHHHHHHHHHCCCCCCC
Q ss_conf 6204443001354421000100036652022111220133211145789-987303334411467899987401344320
Q gi|255764472|r 254 LSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRI-LKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332 (469)
Q Consensus 254 l~~i~~~~riR~~s~~P~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~v-Lk~M~R~~~~e~~~~~i~~~r~~~p~~~i~ 332 (469)
..+. +..++-+++ +...++++.++.+++.+ ..++.+++.+.++.. ....+++...+...+.++.+++. ++.
T Consensus 89 ~~~~-~~~~~~~~T-nG~~~~~~~~~~l~~~g--~~~v~iSld~~~~e~hd~~rg~~g~~~~~~~~i~~~~~~--g~~-- 160 (347)
T COG0535 89 ARKK-GGIRVSLST-NGTLLTEEVLEKLKEAG--LDYVSISLDGLDPETHDPIRGVKGVFKRAVEAIKNLKEA--GIL-- 160 (347)
T ss_pred HHHC-CCEEEEEEC-CCCCCCHHHHHHHHHCC--CCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHH--CCE--
T ss_conf 8513-872898826-87545388999887668--876999974588532140027762699999999999873--970--
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEEC
Q ss_conf 00001352201247898863322101110020000111
Q gi|255764472|r 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370 (469)
Q Consensus 333 tdiIvGfPgETeedf~~Tl~~i~~~~~~~~~vf~yS~r 370 (469)
+-+.+..++.+.++..+..+++.+...+..+++++.+.
T Consensus 161 ~~~~~~v~~~n~~~l~~~~~~~~~~g~~~~~~~~~~~~ 198 (347)
T COG0535 161 VVINTTVTKINYDELPEIADLAAELGVDELNVFPLIPV 198 (347)
T ss_pred EEEEEEEECCCHHHHHHHHHHHHHCCCCCEEEEEEEEC
T ss_conf 48999995663465899999998659760576764431
No 82
>TIGR00423 TIGR00423 conserved hypothetical protein TIGR00423; InterPro: IPR005244 This entry describes a family of conserved hypothetical proteins with no known function. .
Probab=97.91 E-value=6.4e-05 Score=56.47 Aligned_cols=185 Identities=15% Similarity=0.222 Sum_probs=120.0
Q ss_pred CCCCCCCCCCCCHHHHHH--HHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCC-CCCCCCHHHHHHHCCCC
Q ss_conf 233244681110012213--764100588999887631013310587314541134113444-31000216788620444
Q gi|255764472|r 183 QEGCDKFCTFCVVPYTRG--IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDG-EKCTFSDLLYSLSEIKG 259 (469)
Q Consensus 183 ~~GC~~~CsfC~ip~~RG--~~rSr~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y~g~~~~~-~~~~l~~Ll~~l~~i~~ 259 (469)
++=|-..|-||+-..-++ ...--+.|+|.+.|+..++.|++||.|-|=.--.+ ++++ .-..+.+|++.|.+...
T Consensus 12 TNIC~~~C~FCAF~~~~k~~~~Y~Ls~eEI~~Kv~ea~~~G~tE~~iQGGlnP~~---~~nGssl~yy~~l~~~Ik~~~p 88 (331)
T TIGR00423 12 TNICVGKCKFCAFRRREKDKDAYVLSLEEILRKVKEAVAKGATEICIQGGLNPQL---DINGSSLEYYEELFRAIKQEFP 88 (331)
T ss_pred CHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCC---CCCCCHHHHHHHHHHHHHHCCC
T ss_conf 3002324796331134689888140779999999999971982788523427887---6454149999999999974178
Q ss_pred -CCCCCCCCCCCCCC-----------CCHHHHHHCCCCCC--CCCEEEEEECCCHHHHHHHC-CCCCCCHHHHHHHHHHH
Q ss_conf -30013544210001-----------00036652022111--22013321114578998730-33344114678999874
Q gi|255764472|r 260 -LVRLRYTTSHPRDM-----------SDCLIKAHGDLDVL--MPYLHLPVQSGSDRILKSMN-RRHTAYEYRQIIDRIRS 324 (469)
Q Consensus 260 -~~riR~~s~~P~~~-----------~~~li~~~~~~~~i--~~~lhlpiQSgs~~vLk~M~-R~~~~e~~~~~i~~~r~ 324 (469)
.--|++-++-|.++ ..|+++.+++.+ | +|- -+-+=-+|+|=+..= ++-+.++|+++++.+.+
T Consensus 89 PyG~~hiHafSp~Ev~f~A~~~~~~~e~EvL~~LK~aG-L~SmPG--tgAEILdD~vRr~IcP~K~~s~eWlev~~~AH~ 165 (331)
T TIGR00423 89 PYGDVHIHAFSPMEVYFLAKNEGLSIEKEVLKRLKKAG-LDSMPG--TGAEILDDSVRRKICPNKLSSDEWLEVIKTAHR 165 (331)
T ss_pred CCCCEEEECCCHHHHHHHHHHCCCCHHHHHHHHHHHHC-CCCCCC--CCEEECCHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 96524761468689999998618978899999988850-356777--622653033587547798872789999999986
Q ss_pred HCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHH------HHHHCCCHHEEEC----CCHHHH
Q ss_conf 013443200000135220124789886332210------1110020000111----201232
Q gi|255764472|r 325 VRPDIAISSDFIVGFPGETDDDFRATMDLVDKI------GYAQAFSFKYSPR----LGTPGS 376 (469)
Q Consensus 325 ~~p~~~i~tdiIvGfPgETeedf~~Tl~~i~~~------~~~~~~vf~yS~r----~gT~Aa 376 (469)
. |+--++|+|.|+ =|+++|.-+=|.-++++ +=.-.++..|=|- +.||-+
T Consensus 166 ~--GiptTATMMfGH-ve~~~h~v~HL~rir~iQ~~~~~QekTGGFteFIPL~F~~~n~P~~ 224 (331)
T TIGR00423 166 L--GIPTTATMMFGH-VEEPEHRVEHLLRIRKIQSTSLVQEKTGGFTEFIPLPFQPENAPIY 224 (331)
T ss_pred C--CCCCCCHHCCCC-CCCHHHHHHHHHHHHHHCCCCHHHHHHCCEEEECCCCCCCCCCCCC
T ss_conf 6--696210112355-2767889999999987517002335227732101467788877711
No 83
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=97.89 E-value=0.00027 Score=51.74 Aligned_cols=172 Identities=10% Similarity=0.088 Sum_probs=105.7
Q ss_pred CCEEEEEECCCCCCCCCCCCHHHHHHH-H-HHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCCCHHHH
Q ss_conf 725787412332446811100122137-6-41005889998876310133105873145411341134443100021678
Q gi|255764472|r 175 GVTAFLTIQEGCDKFCTFCVVPYTRGI-E-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252 (469)
Q Consensus 175 ~~~a~ikI~~GC~~~CsfC~ip~~RG~-~-rSr~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y~g~~~~~~~~~l~~Ll~ 252 (469)
|....++-.--||-+|.+|-.....+. + +-.++++.++.++ +.|+.-|.++| |.-+ -...+.+|++
T Consensus 27 Plvl~le~t~rCNL~C~~C~~i~~~~~~l~~~Ls~ee~~~~~~---e~Gap~V~itG-------GEPL--Lr~dl~eIv~ 94 (318)
T TIGR03470 27 PLVLMLEPLFRCNLACAGCGKIQYPAEILKQRLSVEECLRAVD---ECGAPVVSIPG-------GEPL--LHPEIDEIVR 94 (318)
T ss_pred CEEEEEEECCCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHH---HCCCCEEEECC-------CCCC--CCCCHHHHHH
T ss_conf 7588731213226778899741367646544389999999999---84997899518-------8745--5647999999
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHH-HCCCCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf 86204443001354421000100036652022111220133211145789987-30333441146789998740134432
Q gi|255764472|r 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS-MNRRHTAYEYRQIIDRIRSVRPDIAI 331 (469)
Q Consensus 253 ~l~~i~~~~riR~~s~~P~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~-M~R~~~~e~~~~~i~~~r~~~p~~~i 331 (469)
.+.+.. +++-+ +.|..-+ ++-++.++.++.+ ++.++|.. .+..-.+ .+++..-+...+.|+.++++--.+.+
T Consensus 95 ~a~~~g--~~v~l-~TNG~Ll-~k~i~~~~~~~~~--~~~VsLDG-~~e~HD~~r~~~G~Fd~av~aIr~ak~~G~~V~i 167 (318)
T TIGR03470 95 GLVARK--KFVYL-CTNALLL-EKKLDKFEPSPYL--TFSVHLDG-LREHHDASVCREGVFDRAVEAIREAKARGFRVTT 167 (318)
T ss_pred HHHHCC--CEEEE-ECCHHHH-HHHHHHHHHCCCC--EEEEECCC-CHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 999759--97999-7755200-9999998518883--69998017-8788668871797799999999999986994679
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEE
Q ss_conf 0000013522012478988633221011100200001
Q gi|255764472|r 332 SSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368 (469)
Q Consensus 332 ~tdiIvGfPgETeedf~~Tl~~i~~~~~~~~~vf~yS 368 (469)
.|++ |-+++.++..+.++++.++..+-+.+.|-.
T Consensus 168 N~Tv---f~~~n~~~i~~~~d~~~~lgVdgi~isp~y 201 (318)
T TIGR03470 168 NTTL---FNDTDPEEVAEFFDYLTDLGVDGMTISPGY 201 (318)
T ss_pred EEEE---ECCCCHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 9897---068999999999999987699738976653
No 84
>PRK13758 anaerobic sulfatase-maturase; Provisional
Probab=97.86 E-value=0.00063 Score=49.06 Aligned_cols=170 Identities=10% Similarity=0.170 Sum_probs=87.7
Q ss_pred EEEECCCCCCCCCCCCHHHHHH-HH-HH--H-HHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCCCHHHHH
Q ss_conf 8741233244681110012213-76-41--0-058899988763101331058731454113411344431000216788
Q gi|255764472|r 179 FLTIQEGCDKFCTFCVVPYTRG-IE-IS--R-SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253 (469)
Q Consensus 179 ~ikI~~GC~~~CsfC~ip~~RG-~~-rS--r-~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y~g~~~~~~~~~l~~Ll~~ 253 (469)
.+++..+||.+|+||-.+...+ +. .| . +.+.+-.-++.+.+...+.+.++ -|||.-+-. -.+++++
T Consensus 8 v~~~T~~CNL~C~YCy~~~~~~~~~~~~~~~~~~e~~~~~i~~~~~~~~~~~~i~-----f~GGEPLL~----~~~~~~~ 78 (370)
T PRK13758 8 IKPASSGCNLKCTYCFYHSLSDNRNVKSYGIMRDEVLESMVKRVLNEAEGHCSFA-----FQGGEPTLA----GLEFFEE 78 (370)
T ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEE-----EECCCCCCC----CCHHHHH
T ss_conf 6668788488997668837688666666454829999999999986368953899-----977222069----8369999
Q ss_pred HHCCC---CC--CCCCCC-CCCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCC-----CCCCCHHHHHHHHH
Q ss_conf 62044---43--001354-421000100036652022111220133211145789987303-----33441146789998
Q gi|255764472|r 254 LSEIK---GL--VRLRYT-TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR-----RHTAYEYRQIIDRI 322 (469)
Q Consensus 254 l~~i~---~~--~riR~~-s~~P~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R-----~~~~e~~~~~i~~~ 322 (469)
+.++. .. ..+.++ ..|-.-++++.++.+++.. + .+-++|- |... +...+| +.+-+.+.+.++.+
T Consensus 79 ~~~~~~~~~~~~~~i~~~i~TNGtLL~~e~~~~l~~~~-~--~I~ISlD-G~~~-~HD~~R~~~~G~Gsf~~v~~~i~~l 153 (370)
T PRK13758 79 LMELQRKHNYKNLKIYNSLQTNGTLIDESWAKFLSENK-F--LVGLSMD-GPKE-IHNLNRKDCCGLDTFSKVERAAELF 153 (370)
T ss_pred HHHHHHHHCCCCCEEEEEEEECCEECCHHHHHHHHHCC-E--EEEEECC-CCHH-HHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf 99999985568976999985188766899999999769-4--8999646-8888-8740068889970599999999999
Q ss_pred HHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHH
Q ss_conf 74013443200000135220124789886332210111002000
Q gi|255764472|r 323 RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366 (469)
Q Consensus 323 r~~~p~~~i~tdiIvGfPgETeedf~~Tl~~i~~~~~~~~~vf~ 366 (469)
++.-..+.+.+.+ -.++.++..+.++++++..+..+...+
T Consensus 154 ~~~~~~~~i~~~i----~~~~~~~~~~i~~~~~~~g~~~~~~~~ 193 (370)
T PRK13758 154 KKYKVEFNILCVV----TSNTARHVNKIYKYFKEKDFKFLQFIN 193 (370)
T ss_pred HHCCCCEEEEEEE----ECCCCCCHHHHHHHHHHCCCCEEEEEE
T ss_conf 9739970089999----187311899999999976998588884
No 85
>COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair]
Probab=97.62 E-value=0.00099 Score=47.57 Aligned_cols=184 Identities=13% Similarity=0.178 Sum_probs=98.9
Q ss_pred EEEEECCCCCCCCCCCCHHHHHHHH-HH----HHHHHHHHHHHHHHH-CCCC-EEEEECCCCCEEEECCCCCCCCCCCHH
Q ss_conf 7874123324468111001221376-41----005889998876310-1331-058731454113411344431000216
Q gi|255764472|r 178 AFLTIQEGCDKFCTFCVVPYTRGIE-IS----RSLSQVVDEARKLID-NGVC-EITLLGQNVNAWRGKGLDGEKCTFSDL 250 (469)
Q Consensus 178 a~ikI~~GC~~~CsfC~ip~~RG~~-rS----r~~~~Iv~ei~~l~~-~G~k-Ei~L~g~d~~~Y~g~~~~~~~~~l~~L 250 (469)
-.++.-+||.+.|.||-...+.+.. .+ ..-+++++.++.-.. .|.+ ..+-+|-++--|. .-..-..|
T Consensus 31 y~inpy~GC~h~C~YCYa~~~~~~~~~~~~~v~vk~n~~e~l~~el~~~~~k~~~i~is~~TDpyq------p~E~~~~l 104 (297)
T COG1533 31 YTLNPYRGCSHGCIYCYARPMHGYLPKSPTKVNVKENLLELLERELRKPGPKRTVIAISSVTDPYQ------PIEKEYRL 104 (297)
T ss_pred EECCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCC------CHHHHHHH
T ss_conf 233774787788841336201466567860554015699999988752467855999854688885------64778789
Q ss_pred HHHHHCCCC--CCCCCCCCCCCCCC-CCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHC-CCCCCCHHHHHHHHHHHHC
Q ss_conf 788620444--30013544210001-0003665202211122013321114578998730-3334411467899987401
Q gi|255764472|r 251 LYSLSEIKG--LVRLRYTTSHPRDM-SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN-RRHTAYEYRQIIDRIRSVR 326 (469)
Q Consensus 251 l~~l~~i~~--~~riR~~s~~P~~~-~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~-R~~~~e~~~~~i~~~r~~~ 326 (469)
.+.+.++-. ..++.+.+=.|... +-+++..++....+ -+.+++-..+.++-|.|- +--+.++=++++..+.++
T Consensus 105 tR~ilei~~~~~~~v~I~TKS~lv~RDld~l~~~~~~~~v--~V~~Sitt~d~~l~k~~EP~apsp~~Ri~al~~l~ea- 181 (297)
T COG1533 105 TRKILEILLKYGFPVSIVTKSALVLRDLDLLLELAERGKV--RVAVSITTLDEELAKILEPRAPSPEERLEALKELSEA- 181 (297)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCHHCCHHHHHHHCCCCCE--EEEEEEECCCHHHHHHCCCCCCCHHHHHHHHHHHHHC-
T ss_conf 9999999885399679997774101027899840112651--8999951684888986589996989999999999987-
Q ss_pred CCCCCCEEEECC--CCCCHHHHHHHHHHHHHHHHHHHCCCHHEEECCCH
Q ss_conf 344320000013--52201247898863322101110020000111201
Q gi|255764472|r 327 PDIAISSDFIVG--FPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 (469)
Q Consensus 327 p~~~i~tdiIvG--fPgETeedf~~Tl~~i~~~~~~~~~vf~yS~r~gT 373 (469)
.+.|.++++ +|+.|+++.++.++-..+.....+..+...-+.++
T Consensus 182 ---Gi~~~v~v~PIiP~~~d~e~e~~l~~~~~ag~~~v~~~~l~~~~~~ 227 (297)
T COG1533 182 ---GIPVGLFVAPIIPGLNDEELERILEAAAEAGARVVVYGTLRLRLDI 227 (297)
T ss_pred ---CCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCHHH
T ss_conf ---9848999855307887588999999999757741363133045778
No 86
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family; InterPro: IPR005910 Histone acetylation is carried out by a class of enzymes known as histone acetyltransferases (HATs), which catalyse the transfer of an acetyl group from acetyl-CoA to the lysine E-amino groups on the N-terminal tails of histones . Early indication that HATs were involved in transcription came from the observation that in actively transcribed regions of chromatin, histones tend to be hyperacetylated, whereas in transcriptionally silent regions histones are hypoacetylated. The histone acetyltransferases are divided into five families. These include the Gcn5-related acetyltransferases (GNATs); the MYST (for 'MOZ, Ybf2/Sas3, Sas2 and Tip60)-related HATs; p300/CBP HATs; the general transcription factor HATs, which include the TFIID subunit TAF250; and the nuclear hormone-related HATs SRC1 and ACTR (SRC3). The GCN5-related N-acetyltransferase superfamily includes such enzymes as the histone acetyltransferases GCN5 and Hat1, the elongator complex subunit Elp3, the mediator-complex subunit Nut1, and Hpa2 . Many GNATs share several functional domains, including an N-terminal region of variable length, an acetyltransferase domain that encompasses the conserved sequence motifs described above, a region that interacts with the coactivator Ada2, and a C-terminal bromodomain that is believed to interact with acetyl-lysine residues. Members of the GNAT family are important for the regulation of cell growth and development. In mice, knockouts of Gcn5L are embryonic lethal. Yeast Gcn5 is needed for normal progression through the G2M boundary and mitotic gene expression. The importance of GNATs is probably related to their role in transcription and DNA repair. The yeast GCN5 (yGCN5) transcriptional coactivator functions as a histone acetyltransferase (HAT) to promote transcriptional activation. The crystal structure of the yeast histone acetyltransferase Hat1-acetyl coenzyme A (AcCoA) shows that Hat1 has an elongated, curved structure, and the AcCoA molecule is bound in a cleft on the concave surface of the protein, marking the active site of the enzyme. A channel of variable width and depth that runs across the protein is probably the binding site for the histone substrate . The central protein core associated with AcCoA binding that appears to be structurally conserved among a superfamily of N-acetyltransferases, including yeast histone acetyltransferase 1 and Serratia marcescens aminoglycoside 3-N-acetyltransferase . The Saccharomyces cerevisiae member YPL086C has been characterised in vitro as an N-terminal acetyltransferase (2.3.1.48 from EC) for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases. In vivo, ELP3 gene deletion confers typical ELP phenotypes such as slow growth adaptation, slow gene activation, and temperature sensitivity. This suggests a role for the proteins as novel, tightly RNAPII-associated histone acetyltransferases in transcription of DNA packaged in chromatin ..
Probab=97.59 E-value=0.00016 Score=53.59 Aligned_cols=193 Identities=19% Similarity=0.257 Sum_probs=127.1
Q ss_pred EEEEEC---CCCC-CC-----CCCC-----C----HHH---------HHHH-HHHHHHHHHHHHHHHHHHCCCC----EE
Q ss_conf 787412---3324-46-----8111-----0----012---------2137-6410058899988763101331----05
Q gi|255764472|r 178 AFLTIQ---EGCD-KF-----CTFC-----V----VPY---------TRGI-EISRSLSQVVDEARKLIDNGVC----EI 225 (469)
Q Consensus 178 a~ikI~---~GC~-~~-----CsfC-----~----ip~---------~RG~-~rSr~~~~Iv~ei~~l~~~G~k----Ei 225 (469)
|-|=|. .=|| .+ |-|| + .|+ +||. ..-=|=..+...++.|-.=|+- |+
T Consensus 68 AVVAvMTsP~~CPHGkytGniC~yCPGG~~s~f~~spQSYTG~EPAA~Rg~~~~YDPY~q~~~Rl~QL~~iGHpvdKVEl 147 (573)
T TIGR01211 68 AVVAVMTSPERCPHGKYTGNICLYCPGGPDSDFENSPQSYTGYEPAALRGRQYDYDPYEQVTARLEQLEQIGHPVDKVEL 147 (573)
T ss_pred CCEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCEEE
T ss_conf 20012262168888542178764268788666678848755676589997650788569999999999871898161788
Q ss_pred EEECCCCCE----EE------------E----CCCCCCCCCCC-HHHHHHHCC--------CC----CCC----------
Q ss_conf 873145411----34------------1----13444310002-167886204--------44----300----------
Q gi|255764472|r 226 TLLGQNVNA----WR------------G----KGLDGEKCTFS-DLLYSLSEI--------KG----LVR---------- 262 (469)
Q Consensus 226 ~L~g~d~~~----Y~------------g----~~~~~~~~~l~-~Ll~~l~~i--------~~----~~r---------- 262 (469)
+|-|==..+ |. | +|.| +|. .|++...+= ++ |.|
T Consensus 148 I~MGGTFpArd~~Yqe~Fv~~~l~Aln~F~yfkd~D----nleeklvr~~~~g~~~~~~e~~~fkraWert~~~~y~~LE 223 (573)
T TIGR01211 148 IIMGGTFPARDLDYQEWFVKRCLNALNDFDYFKDID----NLEEKLVRAELKGNSTEVKEDDEFKRAWERTAEKDYVYLE 223 (573)
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHH----HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCHHHH
T ss_conf 830787778887677899999997316665346712----4677887630576544336887323466553047721368
Q ss_pred ----------CC-CCC---CCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf ----------13-544---2100010003665202211122013321114578998730333441146789998740134
Q gi|255764472|r 263 ----------LR-YTT---SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 (469)
Q Consensus 263 ----------iR-~~s---~~P~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~~~r~~~p~ 328 (469)
.| ++. .-|+...++=|+-|-+.+ +==+-|+|||--|+|+..|||+|+++++.++...+|.+ +
T Consensus 224 ~a~r~NE~~~~RcVG~T~ETRPDyc~e~~id~ML~~G--~TrVElGVQtiy~~i~~~~kRGH~V~~~~~at~llrDa--G 299 (573)
T TIGR01211 224 EAIRKNETSKVRCVGLTIETRPDYCREEEIDRMLKLG--ATRVELGVQTIYNDILERIKRGHTVRDVVEATRLLRDA--G 299 (573)
T ss_pred HHHHHCCCCCCCEEEEEECCCCCCCCHHHHHHHHHCC--CCEEEEEEECCHHHHHHHHCCCCCHHHHHHHHHHHHHC--C
T ss_conf 8996246768643467721588988868899998359--84899752072689999837898589999998776650--4
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHH---HHHHHHHCCCHHEEECCCHHHHHC
Q ss_conf 43200000135220124789886332---210111002000011120123214
Q gi|255764472|r 329 IAISSDFIVGFPGETDDDFRATMDLV---DKIGYAQAFSFKYSPRLGTPGSNM 378 (469)
Q Consensus 329 ~~i~tdiIvGfPgETeedf~~Tl~~i---~~~~~~~~~vf~yS~r~gT~Aa~m 378 (469)
+-++-=+|=|.||=+-|-=.++++-+ ...+||++=|+|-=--.||.-+.|
T Consensus 300 ~KV~yH~MPGlPGs~fErDl~~Fr~~Fedp~FkPDmLKIYPTLV~rGT~LY~l 352 (573)
T TIGR01211 300 LKVVYHIMPGLPGSSFERDLKMFREIFEDPRFKPDMLKIYPTLVTRGTELYEL 352 (573)
T ss_pred CCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEECCEEEECCCCHHHH
T ss_conf 62203117533356635689999886268798978615667102347611688
No 87
>COG1625 Fe-S oxidoreductase, related to NifB/MoaA family [Energy production and conversion]
Probab=97.54 E-value=0.00085 Score=48.07 Aligned_cols=208 Identities=12% Similarity=0.076 Sum_probs=126.8
Q ss_pred CCCCCC---CCCCCHHH--HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCCCHHHHHHHCCC
Q ss_conf 332446---81110012--2137641005889998876310133105873145411341134443100021678862044
Q gi|255764472|r 184 EGCDKF---CTFCVVPY--TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258 (469)
Q Consensus 184 ~GC~~~---CsfC~ip~--~RG~~rSr~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y~g~~~~~~~~~l~~Ll~~l~~i~ 258 (469)
+-|... |.||-.-. .++ --.|+..|.+|...-.--+. |=+| |... ++ +.+. .....+.++.+.....-
T Consensus 35 ~~c~~~~~~C~~cy~~v~~~~~--~~~~~~~v~~e~~~~lg~~~-e~~~-~~~~-~~-~~d~-~c~p~le~~~~r~~~~~ 107 (414)
T COG1625 35 KDCIPYRFGCDDCYLSVNELDT--GFIPPLMVEKEPDEDLGLEF-EEVL-GAKQ-CG-NGDT-FCYPDLEPRGRRARLYY 107 (414)
T ss_pred CCCCCCCCCCCCEEEEEECCCC--CCCCHHHHHCCCCCCCCCCC-CCCC-CEEE-CC-CCCC-CCCCCHHHHHHHHHHHC
T ss_conf 7687764350210058851567--77887674235343324330-0011-2011-27-9986-65731112666787615
Q ss_pred CCCCCCCCCCCCCCCC-CHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEC
Q ss_conf 4300135442100010-003665202211122013321114578998730333441146789998740134432000001
Q gi|255764472|r 259 GLVRLRYTTSHPRDMS-DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIV 337 (469)
Q Consensus 259 ~~~riR~~s~~P~~~~-~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~~~r~~~p~~~i~tdiIv 337 (469)
.+.|+|+++.+-+.++ .++.+.+.+.. ..-+.++++|.++.+=++|-|...+++.++.+..+-++ .+.+.+++ |
T Consensus 108 ~d~~~rL~~tsG~~~~lt~~~~~i~~~g--vdev~~SVhtT~p~lR~klm~n~~A~~~le~L~~f~~~--~~~v~a~i-V 182 (414)
T COG1625 108 KDDDIRLSFTSGSGFTLTNRAERIIDAG--VDEVYFSVHTTNPELRAKLMKNPNAEQLLELLRRFAER--CIEVHAQI-V 182 (414)
T ss_pred CCCCCEEEEEECCCEECCCHHHHHHHCC--CCEEEEEEEECCHHHHHHHHCCCCHHHHHHHHHHHHHH--HHHEEEEE-E
T ss_conf 8844035653126301542689999769--98069999608989999986398677899999999975--31135679-9
Q ss_pred CCCCCH-HHHHHHHHHHHHHHHHHHCCCHHEEECCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 352201-247898863322101110020000111201232143688989999999999999999999999
Q gi|255764472|r 338 GFPGET-DDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFN 406 (469)
Q Consensus 338 GfPgET-eedf~~Tl~~i~~~~~~~~~vf~yS~r~gT~Aa~m~~qV~~~vk~~R~~~l~~~~~~~~~~~~ 406 (469)
=-||=. -+++.+|++-+.+.....+.++++-|-=.| .++- ++-..++.+-..++.+++.+...++.
T Consensus 183 l~PGvNdge~L~kT~~dL~~~g~~~~~~~~~~pvGlt-~~n~--~~i~~~t~~~l~~~k~i~re~~~E~~ 249 (414)
T COG1625 183 LCPGVNDGEELEKTLEDLEEWGAHEVILMRVVPVGLT-RYNR--PGIRPPTPHELEEFKEIVREFDRELG 249 (414)
T ss_pred ECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCEEE-ECCC--CCCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 8578575777999999999728673368986312115-2377--77787787899999999999997538
No 88
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=97.51 E-value=0.0015 Score=46.28 Aligned_cols=72 Identities=22% Similarity=0.326 Sum_probs=49.7
Q ss_pred CEEEEEECCCCCCCCCCCCHHHHH-H----HHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCCCHH
Q ss_conf 257874123324468111001221-3----76410058899988763101331058731454113411344431000216
Q gi|255764472|r 176 VTAFLTIQEGCDKFCTFCVVPYTR-G----IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250 (469)
Q Consensus 176 ~~a~ikI~~GC~~~CsfC~ip~~R-G----~~rSr~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y~g~~~~~~~~~l~~L 250 (469)
...||. --|||.+|+||.++++. | .....++++|+++++.+.....+.|+||| |.-+ -...+.+|
T Consensus 23 p~vFvR-~~GCnl~C~~CDT~y~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~V~iTG-------GEPl--lq~~~~~L 92 (238)
T TIGR03365 23 KTMFVR-TGGCDYRCSWCDSLFTWDGSAKDTWRPMTAEEVWQELKALGGGTPLHVSLSG-------GNPA--LQKPLGEL 92 (238)
T ss_pred EEEEEE-ECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECC-------CCHH--HHCCHHHH
T ss_conf 189994-0898986765898876178788775637899999999983489861899459-------9834--44189999
Q ss_pred HHHHHCC
Q ss_conf 7886204
Q gi|255764472|r 251 LYSLSEI 257 (469)
Q Consensus 251 l~~l~~i 257 (469)
++.+.+.
T Consensus 93 ~~~l~~~ 99 (238)
T TIGR03365 93 IDLGKAK 99 (238)
T ss_pred HHHHHHC
T ss_conf 9999857
No 89
>COG4277 Predicted DNA-binding protein with the Helix-hairpin-helix motif [General function prediction only]
Probab=97.49 E-value=0.00063 Score=49.02 Aligned_cols=197 Identities=21% Similarity=0.300 Sum_probs=104.3
Q ss_pred EEE--CCCCCCCCCCCCHHHHHH-HHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCCCHHHHHHHC
Q ss_conf 741--233244681110012213-76410058899988763101331058731454113411344431000216788620
Q gi|255764472|r 180 LTI--QEGCDKFCTFCVVPYTRG-IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256 (469)
Q Consensus 180 ikI--~~GC~~~CsfC~ip~~RG-~~rSr~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y~g~~~~~~~~~l~~Ll~~l~~ 256 (469)
+|| ..=|-+.|.||+-...-- +--+..+++|+.---.+.++.|-|=.+.+--+ - .....+..++++-+..
T Consensus 56 lKiLlTN~CiyDC~YCINr~s~~~pra~ftp~Eiv~ltlnfYrRnYIeGLFLSSGv------i-~~~DyTmE~mi~var~ 128 (404)
T COG4277 56 LKILLTNFCIYDCAYCINRSSNDTPRARFTPEEIVDLTLNFYRRNYIEGLFLSSGV------I-KNPDYTMEEMIEVARI 128 (404)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHEECCCC------C-CCCCHHHHHHHHHHHH
T ss_conf 99998625777638875555578854305899999999989887424330002463------3-6861479999999998
Q ss_pred --CCCCCCCCCCCCCCCCCC---CHHHHHHCC-CCCCCCCEEEEEECCC---------HHHHHHHCCCC-CCCHHHHHHH
Q ss_conf --444300135442100010---003665202-2111220133211145---------78998730333-4411467899
Q gi|255764472|r 257 --IKGLVRLRYTTSHPRDMS---DCLIKAHGD-LDVLMPYLHLPVQSGS---------DRILKSMNRRH-TAYEYRQIID 320 (469)
Q Consensus 257 --i~~~~riR~~s~~P~~~~---~~li~~~~~-~~~i~~~lhlpiQSgs---------~~vLk~M~R~~-~~e~~~~~i~ 320 (469)
+++.++ +|+|-..++ +++|+.... .+++.--+.+|-|+|= ..||+.|+.=. ..++..+ .
T Consensus 129 LRle~~f~---GYIHlK~IPgas~~li~eaglyadRvSiNIElp~~~~lk~lap~K~p~dI~r~Mg~ir~~i~e~~e--~ 203 (404)
T COG4277 129 LRLEHKFR---GYIHLKIIPGASPDLIKEAGLYADRVSINIELPTDDGLKLLAPEKDPTDILRSMGWIRLKILENAE--D 203 (404)
T ss_pred HHHCCCCC---CEEEEEECCCCCHHHHHHHHHHHHEEEEEEECCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC--C
T ss_conf 83204557---579987569999899999865341057767448864466618888837888898999987765155--0
Q ss_pred HHHHHC-CC---CCCCEEEECCCCCCHHHHHHHHHHHH-HHHHHHHCCCHHEEECCCHHHHHCCCCCCHHHHHHH
Q ss_conf 987401-34---43200000135220124789886332-210111002000011120123214368898999999
Q gi|255764472|r 321 RIRSVR-PD---IAISSDFIVGFPGETDDDFRATMDLV-DKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390 (469)
Q Consensus 321 ~~r~~~-p~---~~i~tdiIvGfPgETeedf~~Tl~~i-~~~~~~~~~vf~yS~r~gT~Aa~m~~qV~~~vk~~R 390 (469)
..|..- |. +.-+|-.|||--|||++|.-.+.+.+ ....+-++....|||-|++|--. ++-|+-...-|
T Consensus 204 ~~r~r~tp~fapaGQSTQmivGA~~~tD~~Ilsrs~~ly~~y~lkRVyySaf~Pv~~s~~lp--~~~pplmRehR 276 (404)
T COG4277 204 KRRKRHTPEFAPAGQSTQMIVGADGETDEDILSRSENLYGRYSLKRVYYSAFSPVPSSPLLP--DDKPPLMREHR 276 (404)
T ss_pred HHHHCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCC--CCCCCHHHHHH
T ss_conf 22210472336778732788715887448899888877532431489862133368898886--66785367777
No 90
>KOG2900 consensus
Probab=97.39 E-value=0.00012 Score=54.44 Aligned_cols=180 Identities=23% Similarity=0.362 Sum_probs=115.6
Q ss_pred EEEE-CCCCCCCCCCCCH--HHHHH--HHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCCCHHHHH
Q ss_conf 8741-2332446811100--12213--76410058899988763101331058731454113411344431000216788
Q gi|255764472|r 179 FLTI-QEGCDKFCTFCVV--PYTRG--IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYS 253 (469)
Q Consensus 179 ~ikI-~~GC~~~CsfC~i--p~~RG--~~rSr~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y~g~~~~~~~~~l~~Ll~~ 253 (469)
.+.| +-||.-.|.||.- .+--| ..+-..+++++++++..-+.|-..+.+- ++| +|+.+.+.+|..+++.
T Consensus 86 LlsIKtGGCsEDCkYCaQSSRy~TGvKA~klmk~DeVi~~Ak~AK~~GSTRFCmG----aAW--RD~~GRk~~fk~IlE~ 159 (380)
T KOG2900 86 LLSIKTGGCSEDCKYCAQSSRYDTGVKAEKLMKVDEVIKEAKEAKRNGSTRFCMG----AAW--RDMKGRKSAFKRILEM 159 (380)
T ss_pred EEEEECCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECC----HHH--HHHCCCHHHHHHHHHH
T ss_conf 8875058865122110100346544027877409999999999886388614311----565--5311414589999999
Q ss_pred HHCCCCCCC---CCCCCCCCCCCCCHHHHHHCCCC-CCCCC-EEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 620444300---13544210001000366520221-11220-13321114578998730333441146789998740134
Q gi|255764472|r 254 LSEIKGLVR---LRYTTSHPRDMSDCLIKAHGDLD-VLMPY-LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 (469)
Q Consensus 254 l~~i~~~~r---iR~~s~~P~~~~~~li~~~~~~~-~i~~~-lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~~~r~~~p~ 328 (469)
+.++.+... +-+++++- +-...+++.+ .-++| ++-+-+.-|.-|-. | +.++-++.++.+|++ |
T Consensus 160 ikevr~MgmEvCvTLGMv~~-----qQAkeLKdAGLTAYNHNlDTSREyYskvItT---R--tYDdRL~Ti~nvr~a--G 227 (380)
T KOG2900 160 IKEVRDMGMEVCVTLGMVDQ-----QQAKELKDAGLTAYNHNLDTSREYYSKVITT---R--TYDDRLQTIKNVREA--G 227 (380)
T ss_pred HHHHHCCCCEEEEEECCCCH-----HHHHHHHHCCCEECCCCCCCHHHHHCCCCEE---C--CHHHHHHHHHHHHHH--C
T ss_conf 99987288100443144138-----8899888546430036764246664001230---2--267788888889872--6
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHH--HHHHCCCHHEEECCCHHHHH
Q ss_conf 43200000135220124789886332210--11100200001112012321
Q gi|255764472|r 329 IAISSDFIVGFPGETDDDFRATMDLVDKI--GYAQAFSFKYSPRLGTPGSN 377 (469)
Q Consensus 329 ~~i~tdiIvGfPgETeedf~~Tl~~i~~~--~~~~~~vf~yS~r~gT~Aa~ 377 (469)
+..-+.-|.|. ||.|+|.--.+--+-.. .|+.+-+-..-+-+|||-+.
T Consensus 228 ikvCsGGIlGL-GE~e~DriGlihtLatmp~HPESvPiN~LvaikGTP~~d 277 (380)
T KOG2900 228 IKVCSGGILGL-GESEDDRIGLIHTLATMPPHPESVPINRLVAIKGTPMAD 277 (380)
T ss_pred CEECCCCCCCC-CCCCCCEEEEEEEECCCCCCCCCCCCCEEEECCCCCCCH
T ss_conf 33314653204-665556034443101489997666511477438864203
No 91
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=97.34 E-value=0.0025 Score=44.59 Aligned_cols=74 Identities=24% Similarity=0.264 Sum_probs=51.0
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHCCCCCC-CCCHHHCCHHHH
Q ss_conf 0889999278325079999999999999876766421898189996473010878898741001100-110011131688
Q gi|255764472|r 61 DADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV-VGPQTYYRLPEL 139 (469)
Q Consensus 61 ~ADviiINTCsV~~~ae~k~~~~i~~~~~~~~~~~k~~p~~~IvVtGC~aq~~~e~l~~~~p~vd~v-ig~~~~~~i~~~ 139 (469)
.+|++.+ ||...+ -..+...++.+| +.+|+.+|+++|.+|+..|+++++ .+.+|.+ .|.++.. ++++
T Consensus 39 ~pdvvg~-s~~~~~--~~~~~~~~~~~k-------~~~p~~~iv~GG~h~t~~p~~~l~-~~~~D~vv~GEGE~t-~~~l 106 (127)
T cd02068 39 KPDVVGI-SLMTSA--IYEALELAKIAK-------EVLPNVIVVVGGPHATFFPEEILE-EPGVDFVVIGEGEET-FLKL 106 (127)
T ss_pred CCCEEEE-EEEHHH--HHHHHHHHHHHH-------HHCCCCEEEECCCCCCCCHHHHHH-CCCCCEEEECCHHHH-HHHH
T ss_conf 9699999-976889--999999999999-------978997899859874549999970-758778996868999-9999
Q ss_pred HHHHCCC
Q ss_conf 8753059
Q gi|255764472|r 140 LERARFG 146 (469)
Q Consensus 140 i~~~~~g 146 (469)
++....+
T Consensus 107 l~~l~~~ 113 (127)
T cd02068 107 LEELEEG 113 (127)
T ss_pred HHHHHCC
T ss_conf 9999849
No 92
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein; InterPro: IPR012840 This enzyme is a member of the radical-SAM family. It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, IPR009161 from INTERPRO) and presumably fulfils the identical function as NrdG , , which utilises S-adenosyl methionine, an iron-sulphur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centred radical in NrdD..
Probab=97.28 E-value=0.0017 Score=45.89 Aligned_cols=169 Identities=16% Similarity=0.253 Sum_probs=93.3
Q ss_pred CCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCC----HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEE
Q ss_conf 333334575677772578741233244681110----0122137641005889998876310133105873145411341
Q gi|255764472|r 162 RLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCV----VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRG 237 (469)
Q Consensus 162 ~~~~~~~~~~~~~~~~a~ikI~~GC~~~CsfC~----ip~~RG~~rSr~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y~g 237 (469)
+++..+.|. ..|++==.+|||++|.||- ++..+|. -..+.+.+++.+++=..- +.=+++|| |
T Consensus 7 p~S~~D~PG-----~~a~~iF~~GCn~~CpyCHN~~~~~~~~~~-~~~~~e~~~~~L~~R~~l-l~gVVitG-------G 72 (220)
T TIGR02495 7 PFSTVDYPG-----KLAFTIFFQGCNLKCPYCHNSELLIPRKGS-GEIELEELLEFLRRRQGL-LDGVVITG-------G 72 (220)
T ss_pred CEEEEEECC-----CEEEEEEECCCCCCCCCCCCCCCHHHHCCC-CCCCHHHHHHHHHHCCCC-EEEEEEEC-------C
T ss_conf 114663188-----536888702788998788887640020057-610277799998731342-10578728-------7
Q ss_pred CCCCCCCCC-CCHHHHHHHC-CCCCCCCCCCC--CCCCCC----CCHHHHHHCC-CCCCCCCEE--EEEE----------
Q ss_conf 134443100-0216788620-44430013544--210001----0003665202-211122013--3211----------
Q gi|255764472|r 238 KGLDGEKCT-FSDLLYSLSE-IKGLVRLRYTT--SHPRDM----SDCLIKAHGD-LDVLMPYLH--LPVQ---------- 296 (469)
Q Consensus 238 ~~~~~~~~~-l~~Ll~~l~~-i~~~~riR~~s--~~P~~~----~~~li~~~~~-~~~i~~~lh--lpiQ---------- 296 (469)
.- .-... |.++++++.+ +. +.|-+-| ++|..+ ...|+|-++= .+--..+.| ++.+
T Consensus 73 Ep--tlQ~~eL~d~~~~v~~nlG--f~vkLdTNG~~P~~L~~ll~~gLvD~va~D~Kap~~~y~~~~G~~~~~~~~~tni 148 (220)
T TIGR02495 73 EP--TLQAGELGDFLREVRENLG--FEVKLDTNGSNPRVLEELLEEGLVDYVAMDVKAPPEKYGELYGREKNAAKKETNI 148 (220)
T ss_pred CH--HHHHHHHHHHHHHHHHHCC--CEEEEECCCCCHHHHHHHHHCCCCCEEEEECCCCHHHCCEEECCCCCCCCCCCCC
T ss_conf 53--2367778999999998659--2785606788678999998604875787501478656740006332100353246
Q ss_pred --CCCHHHHHHHCCCCCCCHHHHHHHHHHHHC----CCCCCCEEEECCCCCCH-HHHHHHHHHHHHHHH
Q ss_conf --145789987303334411467899987401----34432000001352201-247898863322101
Q gi|255764472|r 297 --SGSDRILKSMNRRHTAYEYRQIIDRIRSVR----PDIAISSDFIVGFPGET-DDDFRATMDLVDKIG 358 (469)
Q Consensus 297 --Sgs~~vLk~M~R~~~~e~~~~~i~~~r~~~----p~~~i~tdiIvGfPgET-eedf~~Tl~~i~~~~ 358 (469)
|-.+.+|- +.+.+-++-+.+.- +..-+||++--+|= + +||+.+-.++|++..
T Consensus 149 sPsrtPe~l~--------~~~~~SlEil~~s~GCGGi~fE~RTTV~~~~~--~Geed~~ei~~~i~~~~ 207 (220)
T TIGR02495 149 SPSRTPEKLL--------KNILKSLEILLESGGCGGIEFELRTTVVRGLL--DGEEDLAEIATRIKENG 207 (220)
T ss_pred CCCCCHHHHH--------HHHHHHHHHHHHCCCCCCCCCEEECCCCHHHH--CCCHHHHHHHHHHCCCC
T ss_conf 8775658999--------99875567554247868865324456552541--65278999997632244
No 93
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=0.018 Score=38.12 Aligned_cols=178 Identities=15% Similarity=0.219 Sum_probs=89.2
Q ss_pred EEEECCCCCCCCCCCCHHHHHHHHHHHHHHH----HHHHHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCCCHHHHHH
Q ss_conf 8741233244681110012213764100588----999887631013310587314541134113444310002167886
Q gi|255764472|r 179 FLTIQEGCDKFCTFCVVPYTRGIEISRSLSQ----VVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254 (469)
Q Consensus 179 ~ikI~~GC~~~CsfC~ip~~RG~~rSr~~~~----Iv~ei~~l~~~G~kEi~L~g~d~~~Y~g~~~~~~~~~l~~Ll~~l 254 (469)
+.==..|||++|-||.-|-+.-.-+..+.++ ++.+..... .+..-|.++| |.-+ ....-+.++++..
T Consensus 38 ~~vf~~GCnlrC~~C~N~~~~~~~~~~~~~~~~~e~l~~~~~~~-~~~~gvt~SG-------GEP~-~q~e~~~~~~~~a 108 (260)
T COG1180 38 LSVFLQGCNLRCPYCQNPEISQRGREVSGEEVSPEVLVDKAFYS-ESGGGVTFSG-------GEPT-LQAEFALDLLRAA 108 (260)
T ss_pred EEEEECCCCCCCCCCCCHHHHHCCCCCCHHHCCHHHHHHHHHHC-CCCCEEEEEC-------CHHH-HHHHHHHHHHHHH
T ss_conf 99987898998998979467606565656457898999987431-6998899989-------6044-4399999999999
Q ss_pred HCCCCCCCC--CCCCCCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCC
Q ss_conf 204443001--354421000100036652022111220133211145789987303334411467899987401344320
Q gi|255764472|r 255 SEIKGLVRL--RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332 (469)
Q Consensus 255 ~~i~~~~ri--R~~s~~P~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~~~r~~~p~~~i~ 332 (469)
.+. |+.-. --+++.|..+ ++|++. +-.+-+-|-..+++.-+..- +-+.+.+++.++.+.+.-..+-++
T Consensus 109 ke~-Gl~~~l~TnG~~~~~~~-~~l~~~-------~D~v~~DlK~~~~~~yr~~t-g~~~~~vl~~~~~l~~~g~~ve~r 178 (260)
T COG1180 109 KER-GLHVALDTNGFLPPEAL-EELLPL-------LDAVLLDLKAFDDELYRKLT-GADNEPVLENLELLADLGVHVEIR 178 (260)
T ss_pred HHC-CCEEEEECCCCCCHHHH-HHHHHH-------CCCEEEECCCCCHHHHHHHH-CCCHHHHHHHHHHHHHCCCEEEEE
T ss_conf 987-99089976899882689-999974-------23148840668878889875-687168899999986179839998
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEECCCHHHHHCCC
Q ss_conf 000013522012478988633221011100200001112012321436
Q gi|255764472|r 333 SDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE 380 (469)
Q Consensus 333 tdiIvGfPgETeedf~~Tl~~i~~~~~~~~~vf~yS~r~gT~Aa~m~~ 380 (469)
+-+|=|| +..+++.++..+|+.++. ..-++.-.+-.|-+.|+.
T Consensus 179 ~lviPg~-~d~~e~i~~i~~~i~~~~----~~~p~~~l~fhp~~~~~~ 221 (260)
T COG1180 179 TLVIPGY-NDDEEEIRELAEFIADLG----PEIPIHLLRFHPDYKLKD 221 (260)
T ss_pred EEECCCC-CCCHHHHHHHHHHHHHCC----CCCCEEEECCCCCHHCCC
T ss_conf 8733898-899999999999997308----666558756687401135
No 94
>PRK13745 anaerobic sulfatase-maturase; Provisional
Probab=97.19 E-value=0.0061 Score=41.67 Aligned_cols=226 Identities=9% Similarity=0.093 Sum_probs=109.6
Q ss_pred CCCCEEEE-EECCCCCCCCCCCCHHHH---H--HHHHHHHHHHHHHHHHHHHHC-CCCEEEEECCCCCEEEECCCCCCCC
Q ss_conf 77725787-412332446811100122---1--376410058899988763101-3310587314541134113444310
Q gi|255764472|r 173 KRGVTAFL-TIQEGCDKFCTFCVVPYT---R--GIEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKC 245 (469)
Q Consensus 173 ~~~~~a~i-kI~~GC~~~CsfC~ip~~---R--G~~rSr~~~~Iv~ei~~l~~~-G~kEi~L~g~d~~~Y~g~~~~~~~~ 245 (469)
.++....+ +++.-||-+|+||-.... + ++..-.+.+.+-+-|+..++. ...++.++ |.|.. +
T Consensus 10 ~~p~hvm~KP~s~~CNL~C~YCyy~~~~~~~~~~~~~~Ms~e~l~~~I~~~~~~~~~~~v~f~------~~GGE-----P 78 (412)
T PRK13745 10 AKPLYVMLKPVGAVCNLACDYCYYLEKSKLYQENPKHVMSDELLEKFIKEYINSQTMPQVLFT------WHGGE-----T 78 (412)
T ss_pred CCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEE------EECCC-----C
T ss_conf 676279821355875889986788161435656775789899999999999964899858999------86854-----4
Q ss_pred CCC--HHHHHHH----CCCCCCCCCCC-CCCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCC----CCCCCH
Q ss_conf 002--1678862----04443001354-421000100036652022111220133211145789987303----334411
Q gi|255764472|r 246 TFS--DLLYSLS----EIKGLVRLRYT-TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR----RHTAYE 314 (469)
Q Consensus 246 ~l~--~Ll~~l~----~i~~~~riR~~-s~~P~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R----~~~~e~ 314 (469)
.|. +..+++. +...-.+|.++ ..|-.-++++.++.++++.-. +-++| -|...+=.+.++ +.|-+.
T Consensus 79 lL~gl~f~~~~v~l~~~~~~g~~i~~siQTNGtLL~dew~~ff~~~~f~---VgiSi-DGp~~~HD~~R~~~~G~gs~~~ 154 (412)
T PRK13745 79 LMRPLSFYKKAMELQKKYARGRTIDNCIQTNGTLLTDEWCEFFRENNWL---VGVSI-DGPQEFHDEYRKNKMGKPSFVK 154 (412)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCEECCHHHHHHHHHCCCE---EEEEC-CCCHHHHHHCCCCCCCCCHHHH
T ss_conf 5654789999999999853898468999877875499999999985967---99962-5887887402798899877999
Q ss_pred HHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEECC-----CHHHHHCCCC----C-CH
Q ss_conf 467899987401344320000013522012478988633221011100200001112-----0123214368----8-98
Q gi|255764472|r 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL-----GTPGSNMLEQ----V-DE 384 (469)
Q Consensus 315 ~~~~i~~~r~~~p~~~i~tdiIvGfPgETeedf~~Tl~~i~~~~~~~~~vf~yS~r~-----gT~Aa~m~~q----V-~~ 384 (469)
+.+.++.+++.--+..+-|.+ =.++-+.-.+..+|++++.+.++..-|...+- |+..+.+..+ + |-
T Consensus 155 v~~~i~lL~~~~v~fn~L~vv----~~~n~~~p~~iY~f~k~lg~~~lQFiP~ve~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (412)
T PRK13745 155 VMKGINLLKKHGVEWNAMAVV----NDFNADYPLDFYNFFKELDCHYIQFAPIVERIFSHQDGRHLASLAQRDGGELAPF 230 (412)
T ss_pred HHHHHHHHHHCCCCEEEEEEE----ECHHHHCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 999999999849964699998----1115458899999999759966876312365556666544456665555656775
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEC
Q ss_conf 999999999999999999999998579789999842
Q gi|255764472|r 385 NVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 (469)
Q Consensus 385 ~vk~~R~~~l~~~~~~~~~~~~~~~iG~~~~Vlve~ 420 (469)
.+.-+..-. ...++..+|.+..+|+..--++|.
T Consensus 231 sl~p~~yG~---FL~~iFd~W~~~d~g~v~I~~Fd~ 263 (412)
T PRK13745 231 SVTPEQWGN---FLCTLFDEWVKEDVGKYYIQLFDS 263 (412)
T ss_pred CCCHHHHHH---HHHHHHHHHHHHCCCCEEEEEHHH
T ss_conf 329999999---999999999983799599850899
No 95
>COG0641 AslB Arylsulfatase regulator (Fe-S oxidoreductase) [General function prediction only]
Probab=97.06 E-value=0.0095 Score=40.27 Aligned_cols=196 Identities=11% Similarity=0.080 Sum_probs=98.3
Q ss_pred CCCCCCCCCHHHHHHHH-HHHHHHHHHHHHHHHHHC-CCCEEEEECCCCCEEEECCCCCCCCCCCHHHHHHHC-CCCCCC
Q ss_conf 24468111001221376-410058899988763101-331058731454113411344431000216788620-444300
Q gi|255764472|r 186 CDKFCTFCVVPYTRGIE-ISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE-IKGLVR 262 (469)
Q Consensus 186 C~~~CsfC~ip~~RG~~-rSr~~~~Iv~ei~~l~~~-G~kEi~L~g~d~~~Y~g~~~~~~~~~l~~Ll~~l~~-i~~~~r 262 (469)
||..|.||-.+.. .+. +-.+.+...+-++.+.+. +...|.++ -|||.-+ ..+..|.+....+.+ .....+
T Consensus 18 CNL~C~YC~~~~~-~~~~~~Ms~etle~~i~~~~~~~~~~~v~~~-----w~GGEPl-L~~~~f~~~~~~l~~k~~~~~~ 90 (378)
T COG0641 18 CNLDCKYCFYLEK-ESLQRIMSDETLEEYVRQYIAASNGDKVTFT-----WQGGEPL-LAGLDFYRKAVALQQKYANGKT 90 (378)
T ss_pred CCCCCCEECCCCC-CCCCCCCCHHHHHHHHHHHHHCCCCCEEEEE-----EECCCCC-CCHHHHHHHHHHHHHHHCCCCC
T ss_conf 6998885076177-7777878999999999999960898747999-----9788640-3408799999999998605882
Q ss_pred CCCC-CCCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCC-----CCCCCHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 1354-421000100036652022111220133211145789987303-----3344114678999874013443200000
Q gi|255764472|r 263 LRYT-TSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR-----RHTAYEYRQIIDRIRSVRPDIAISSDFI 336 (469)
Q Consensus 263 iR~~-s~~P~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R-----~~~~e~~~~~i~~~r~~~p~~~i~tdiI 336 (469)
+..+ ..|-.-++++..+.+++.+ . ++-++|- |- +-+..=.| +.|-+.+.+.++.+++. ++.+.+ ++
T Consensus 91 i~~siqTNg~LL~~e~~e~l~~~~--~-~IgISiD-Gp-~eihD~~R~~~~GkgTfd~i~~~i~~L~~~--~v~~~~-~~ 162 (378)
T COG0641 91 ISNALQTNGTLLNDEWAEFLAEHD--F-LIGISID-GP-EEIHDKYRVTKSGKGTFDRVMKGLELLQAH--GVDFNT-LT 162 (378)
T ss_pred EEEEEEECCCCCCHHHHHHHHHCC--C-EEEEECC-CC-HHHHCCCCCCCCCCCCHHHHHHHHHHHHHC--CCCEEE-EE
T ss_conf 578998760325799999998529--6-6999666-81-776111035789985699999999999975--884699-99
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEECCCHHHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf 1352201247898863322101110020000111201232143688989999999999999
Q gi|255764472|r 337 VGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKK 397 (469)
Q Consensus 337 vGfPgETeedf~~Tl~~i~~~~~~~~~vf~yS~r~gT~Aa~m~~qV~~~vk~~R~~~l~~~ 397 (469)
| ..-++-+...+.++|+.+.....+...|--+..++-+.....+++...=.+....+-+.
T Consensus 163 v-v~~~n~~~~~ei~~~l~~~g~~~i~fip~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~ 222 (378)
T COG0641 163 V-VNRQNVLHPEEIYHFLKSEGSKFIQFIPLVESDNRGDSLLEFSVTAEEYGQFLIAIFDE 222 (378)
T ss_pred E-ECHHHHHCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 9-76445307999999999737663898851168887753221234666799999999999
No 96
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=97.02 E-value=0.0068 Score=41.31 Aligned_cols=171 Identities=13% Similarity=0.165 Sum_probs=90.6
Q ss_pred CCCCCCCCCCCC--HHHHHHH---HHHHHHHHHHHHHHHHHHC---CCCE-------EEEECCCCCEEEECCCCCCC---
Q ss_conf 233244681110--0122137---6410058899988763101---3310-------58731454113411344431---
Q gi|255764472|r 183 QEGCDKFCTFCV--VPYTRGI---EISRSLSQVVDEARKLIDN---GVCE-------ITLLGQNVNAWRGKGLDGEK--- 244 (469)
Q Consensus 183 ~~GC~~~CsfC~--ip~~RG~---~rSr~~~~Iv~ei~~l~~~---G~kE-------i~L~g~d~~~Y~g~~~~~~~--- 244 (469)
-..|+++|.||= .+.--|. -.--+|+.|++++-..... |++- -+.-+.+...+ .-.+.|++
T Consensus 65 l~~C~~~CvfCWR~~~~~~~~~~~~~~DdPe~Ive~~i~~h~~li~g~kG~p~v~~er~~EA~~p~H~-AiSL~GEPtlY 143 (321)
T PRK13762 65 LAWCNQRCLFCWRPLEEDVGLLKPPEWDDPEEIVEESIKEQRKLLSGYKGNPKVDKEKFEEALEPKHV-AISLSGEPTLY 143 (321)
T ss_pred HHHHHCCCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCHHE-EHHHCCCCCCC
T ss_conf 77774448565689988876667788889899999999999999730589999898999872791001-02204886320
Q ss_pred CCCCHHHHHHHCCCCCCCCCCCC-CCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCCC---CCHHHHHHH
Q ss_conf 00021678862044430013544-21000100036652022111220133211145789987303334---411467899
Q gi|255764472|r 245 CTFSDLLYSLSEIKGLVRLRYTT-SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHT---AYEYRQIID 320 (469)
Q Consensus 245 ~~l~~Ll~~l~~i~~~~riR~~s-~~P~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R~~~---~e~~~~~i~ 320 (469)
+.+.+|++.+.+- | +++ +--+..-++.|+.+...| -.|.+++..-+.+.++...|+-- -+.+.+-++
T Consensus 144 P~l~eLi~~~h~r-~-----~stFLVTNg~~P~~l~~l~~~P---TQLYvSldAp~~e~~k~i~rPl~~d~Wer~~~sL~ 214 (321)
T PRK13762 144 PRLPELIEEFHKR-G-----FTTFLVTNGTRPDVLEKLEAEP---TQLYVSLDAPDKETYNRINRPVIPDAWERILETLE 214 (321)
T ss_pred HHHHHHHHHHHHC-C-----CCEEEEECCCCHHHHHHCCCCC---CEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 2189999999857-9-----8379982898989998566765---42799800699999998616553318999999999
Q ss_pred HHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHH
Q ss_conf 9874013443200000135220124789886332210111002000
Q gi|255764472|r 321 RIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366 (469)
Q Consensus 321 ~~r~~~p~~~i~tdiIvGfPgETeedf~~Tl~~i~~~~~~~~~vf~ 366 (469)
.+++..--.+++.++|-||--+..+.|.+ +++...++.+-|=.
T Consensus 215 ~L~~~~~RTV~R~TLVkg~Nm~~~~~yA~---Li~~~~P~FIEvK~ 257 (321)
T PRK13762 215 LLPSKKTRTVIRITLVKGLNMTDPEGYAK---LIERANPDFVEVKA 257 (321)
T ss_pred HHHCCCCCEEEEEEEECCCCCCCHHHHHH---HHHHCCCCEEEEEE
T ss_conf 75437987599998765657679899999---99854998798711
No 97
>TIGR00048 TIGR00048 radical SAM enzyme, Cfr family; InterPro: IPR004383 This family of conserved hypothetical proteins groups bacterial proteins of unknown function..
Probab=96.81 E-value=0.012 Score=39.60 Aligned_cols=189 Identities=14% Similarity=0.213 Sum_probs=110.8
Q ss_pred EEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCEEEEECCC-CCEEEECCCCCCCCCCCHHHHHH
Q ss_conf 57874123324468111001221376410058899988763101-33105873145-41134113444310002167886
Q gi|255764472|r 177 TAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQN-VNAWRGKGLDGEKCTFSDLLYSL 254 (469)
Q Consensus 177 ~a~ikI~~GC~~~CsfC~ip~~RG~~rSr~~~~Iv~ei~~l~~~-G~kEi~L~g~d-~~~Y~g~~~~~~~~~l~~Ll~~l 254 (469)
.-=|.-|=||.-.|+||.+-. -|=.|--...+||++|=...+. |.-+ ++++= ++.=--.|+.-.-.+|.+.+..+
T Consensus 122 TvCVSsQvGC~~~C~FC~T~~-gGf~RNL~~~EIi~Qv~~~~k~~G~~~--~~~erP~~nvV~MGmGEPL~Nl~~vv~a~ 198 (378)
T TIGR00048 122 TVCVSSQVGCALGCTFCATAK-GGFNRNLEASEIIGQVLRVQKILGAAE--ETGERPVSNVVFMGMGEPLLNLNEVVKAL 198 (378)
T ss_pred CEEEEECCCCCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHHCCCC--CCCCCCEEEEEECCCCCCCCCHHHHHHHH
T ss_conf 268710235422551033457-875214510338999999999834557--77665404788746787101179999999
Q ss_pred HCCCCC-------CCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCHHHH---HHHCCCCCCCHHHHHHHHHHH
Q ss_conf 204443-------0013544210001000366520221112201332111457899---873033344114678999874
Q gi|255764472|r 255 SEIKGL-------VRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL---KSMNRRHTAYEYRQIIDRIRS 324 (469)
Q Consensus 255 ~~i~~~-------~riR~~s~~P~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~vL---k~M~R~~~~e~~~~~i~~~r~ 324 (469)
.=+... .||=+|+ ..+.+.+ +.+++. .+==.|=|+|-.-++++= -=.||+|..+++++.|++.-.
T Consensus 199 ei~n~~~g~~is~r~~T~ST---sGv~~ki-~~Lad~-~l~V~lAiSLHApn~~~R~~l~P~nk~Y~ie~ll~~vr~Y~~ 273 (378)
T TIGR00048 199 EILNDDVGLGISKRRITIST---SGVVPKI-DELADK-MLQVALAISLHAPNDELRSSLMPINKKYNIETLLAAVRRYLE 273 (378)
T ss_pred HHHHHHHHCCCCCCEEEEEE---CCHHHHH-HHHCCC-CCCEEEEEEECCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHH
T ss_conf 98742220365673378873---5714588-885132-110334455328871124440650014786799999987586
Q ss_pred H-CC---CCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEECCCHHH
Q ss_conf 0-13---443200000135220124789886332210111002000011120123
Q gi|255764472|r 325 V-RP---DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPG 375 (469)
Q Consensus 325 ~-~p---~~~i~tdiIvGfPgETeedf~~Tl~~i~~~~~~~~~vf~yS~r~gT~A 375 (469)
. .- -++|= -++.+-=...-|..+++.++++.++ .++|.=||=|-||.+=
T Consensus 274 ~~~~n~GRV~fE-Y~Ll~~vND~~~HA~~La~lL~g~~-ckvNLIP~NP~~e~~Y 326 (378)
T TIGR00048 274 KTGRNQGRVTFE-YVLLDGVNDQVEHAEELAELLKGVK-CKVNLIPFNPFPEADY 326 (378)
T ss_pred HCCCCCCCEEEE-EEECCCCCCCHHHHHHHHHHHCCCC-CEEEEEECCCCCCCCC
T ss_conf 427677726887-4200246885889999999856998-5040121378798888
No 98
>pfam02310 B12-binding B12 binding domain. This domain binds to B12 (adenosylcobamide), it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase.
Probab=96.75 E-value=0.0047 Score=42.51 Aligned_cols=69 Identities=23% Similarity=0.302 Sum_probs=45.0
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHCCCCCC-CCCHHHCCHHHH
Q ss_conf 0889999278325079999999999999876766421898189996473010878898741001100-110011131688
Q gi|255764472|r 61 DADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVV-VGPQTYYRLPEL 139 (469)
Q Consensus 61 ~ADviiINTCsV~~~ae~k~~~~i~~~~~~~~~~~k~~p~~~IvVtGC~aq~~~e~l~~~~p~vd~v-ig~~~~~~i~~~ 139 (469)
.+|++-+ ||+.+.+. ..+...++.+| +.+|+.+|+++|-+++..|+++++..+++|.+ +|+++.. +.++
T Consensus 51 ~pdiVgi-S~~~~~~~-~~~~~l~~~ik-------~~~p~~~iv~GG~~~t~~p~~~l~~~~~~D~vv~GEgE~~-~~~L 120 (121)
T pfam02310 51 NPDVVGL-SALMTTNL-PAAKELARLLK-------RIRPGVKVVVGGPHPTADPEEVLRAAPGIDDVVRGEGEDA-LEAL 120 (121)
T ss_pred CCCEEEE-ECCCCCCC-HHHHHHHHHHH-------HHCCCCEEEEECCCCCCCHHHHHHCCCCCCEEEECCCHHH-HHHH
T ss_conf 9999999-52321121-13689999999-------8598975998387634189999840899758998976899-9986
No 99
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme; InterPro: IPR012838 Members of this family are iron-sulphur proteins with a radical-SAM domain. A single glycine residue in 2.3.1.54 from EC, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of a proton from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue .; GO: 0043365 [formate-C-acetyltransferase]-activating enzyme activity.
Probab=96.73 E-value=0.013 Score=39.14 Aligned_cols=209 Identities=16% Similarity=0.230 Sum_probs=106.1
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHH--HH-HHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEE
Q ss_conf 44333334575677772578741233244681110012213--76-4100588999887631013310587314541134
Q gi|255764472|r 160 FERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRG--IE-ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR 236 (469)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~a~ikI~~GC~~~CsfC~ip~~RG--~~-rSr~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y~ 236 (469)
++.....++|..| ||=-..||+.||-||.=|-+.- +- +-++++++++||..+..- .-- +=|
T Consensus 5 ~Es~G~vDGPG~R------FvvFmqGC~lRC~YChNPDTW~~~~~G~~~t~~el~~e~~~yk~f-----~~~-----sGG 68 (243)
T TIGR02493 5 VESMGTVDGPGIR------FVVFMQGCPLRCQYCHNPDTWDLKKGGTEVTVEELIKEVKSYKDF-----FKA-----SGG 68 (243)
T ss_pred EEECCCCCCCCCE------EEEEECCHHHHHHHCCCCCCCCCCCCCCEECHHHHHHHHHHHHHH-----HHC-----CCC
T ss_conf 3534522388506------877543536775305898743358878120789999999989988-----720-----799
Q ss_pred ECCCCCCC----CC-CCHHHHHHHCCCCCCCCCCCCCCCCC--CCCHHHHHHCC-CCCCCCCEEE---EEECCCHHHHHH
Q ss_conf 11344431----00-02167886204443001354421000--10003665202-2111220133---211145789987
Q gi|255764472|r 237 GKGLDGEK----CT-FSDLLYSLSEIKGLVRLRYTTSHPRD--MSDCLIKAHGD-LDVLMPYLHL---PVQSGSDRILKS 305 (469)
Q Consensus 237 g~~~~~~~----~~-l~~Ll~~l~~i~~~~riR~~s~~P~~--~~~~li~~~~~-~~~i~~~lhl---piQSgs~~vLk~ 305 (469)
|-++-|.- .. +.++++++.+-.|+- .-+ +=.. + .++..+.+ .+++.++.|| =|=+.+++.=+.
T Consensus 69 GvT~SGGEPllQ~~F~~~~f~~cK~~~GiH-Tcl---DT~GGCf--tf~~~~~~~~~~lLe~TDLvLLDiK~~~~~~y~~ 142 (243)
T TIGR02493 69 GVTVSGGEPLLQPEFVLELFKACKKELGIH-TCL---DTSGGCF--TFLGGFTEAADELLEVTDLVLLDIKHIDPEKYKK 142 (243)
T ss_pred CEEEECCCCCCCHHHHHHHHHHHHHHCCCE-EEE---ECCCCHH--HHHCCHHHHHHHHHHCCCEEEEECCCCCHHHCCC
T ss_conf 589868950201699999999999856983-887---4488343--3412124899975100587886234368124000
Q ss_pred HCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHH----------HHHHCCCHHEEECCCHHH
Q ss_conf 3033344114678999874013443200000135220124789886332210----------111002000011120123
Q gi|255764472|r 306 MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI----------GYAQAFSFKYSPRLGTPG 375 (469)
Q Consensus 306 M~R~~~~e~~~~~i~~~r~~~p~~~i~tdiIvGfPgETeedf~~Tl~~i~~~----------~~~~~~vf~yS~r~gT~A 375 (469)
.=+.-+.+..++..+.+++...-+=||==++=|| +-.+||.++.-+|++.+ +|-.+++++|-. -=..
T Consensus 143 LTg~~~~~ptl~Fa~~L~~~~kP~WiRYVlVPGy-TD~~eDi~~l~~fv~~~~~averVe~LPYH~LG~~KWe~--~g~~ 219 (243)
T TIGR02493 143 LTGVKSLEPTLEFAKYLAKRNKPIWIRYVLVPGY-TDSEEDIEALAEFVKTLPNAVERVEVLPYHQLGVYKWEA--LGIE 219 (243)
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCC-CCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHH--CCCC
T ss_conf 1456775245899999996589889999865887-799899999999997469927998656886021103876--6897
Q ss_pred HHCCCCCC-HHHHHHHHHH
Q ss_conf 21436889-8999999999
Q gi|255764472|r 376 SNMLEQVD-ENVKAERLLC 393 (469)
Q Consensus 376 a~m~~qV~-~~vk~~R~~~ 393 (469)
|.|++.-+ .+..-+|.+.
T Consensus 220 Y~L~~~~~p~~e~~~~~~~ 238 (243)
T TIGR02493 220 YKLEGVKPPNKEQLERIKE 238 (243)
T ss_pred CCCCCCCCCCHHHHHHHHH
T ss_conf 5888889879899999999
No 100
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=96.70 E-value=0.015 Score=38.81 Aligned_cols=133 Identities=14% Similarity=0.186 Sum_probs=79.2
Q ss_pred CCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHH-HHHHH
Q ss_conf 10003665202211122013321114578998730333441146789998740134432000001352201247-89886
Q gi|255764472|r 273 MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD-FRATM 351 (469)
Q Consensus 273 ~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~~~r~~~p~~~i~tdiIvGfPgETeed-f~~Tl 351 (469)
++++-++-+.+. ++.| +++|++.-++.+=++|=++..+.+.++.++++.++ ++.+.|- ||=-||=.+-+ .++|+
T Consensus 126 l~e~D~~RIi~~-rLSP-l~ISVHaT~pelR~~mL~n~~ag~il~~l~~L~~~--gI~~h~Q-IVLCPGiNDG~~L~rTi 200 (433)
T TIGR03279 126 LPPAEWQRIEQL-RLSP-LYVSVHATEPSLRARLLKNPRAGLILEQLKWFQER--RLQLHAQ-VVVCPGINDGKHLERTL 200 (433)
T ss_pred CCHHHHHHHHHH-CCCC-EEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHC--CCEEEEE-EEECCCCCCHHHHHHHH
T ss_conf 998999999982-5786-38998639989999987699578999999999976--9879847-99879967669999899
Q ss_pred HHHHHHH---HH--------HCCCHHEEECCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEC
Q ss_conf 3322101---11--------002000011120123214368898999999999999999999999998579789999842
Q gi|255764472|r 352 DLVDKIG---YA--------QAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 (469)
Q Consensus 352 ~~i~~~~---~~--------~~~vf~yS~r~gT~Aa~m~~qV~~~vk~~R~~~l~~~~~~~~~~~~~~~iG~~~~Vlve~ 420 (469)
+=+-++. ++ =+++.+| |+|-+ .+. .+.. +-+++..+..+.....+.++ .|+..--+-+|
T Consensus 201 ~DL~~~~~~~~P~v~SvavVPVGlTk~--R~~l~--~l~-~~~~----e~A~~vi~~ve~~Q~~~~~~-~G~~fv~~sDE 270 (433)
T TIGR03279 201 RDLAQFHDGDWPTVLSVAVVPVGLTRF--RPEED--ELT-PVTP----ECARRVIAQVEALQTQFQRQ-LGSRFAWLADE 270 (433)
T ss_pred HHHHHHHCCCCCCEEEEEEEECCCCCC--CCCCC--CCC-CCCH----HHHHHHHHHHHHHHHHHHHH-HCCCEEEECHH
T ss_conf 999986124688425777883242135--78999--872-1899----99999999999999999998-09945960417
No 101
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=96.66 E-value=0.0094 Score=40.29 Aligned_cols=147 Identities=12% Similarity=0.128 Sum_probs=77.9
Q ss_pred EEEEECCCCCCCCCCCCHHHHHH-HHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCC-CCCCCCCHHHHHHH
Q ss_conf 78741233244681110012213-76410058899988763101331058731454113411344-43100021678862
Q gi|255764472|r 178 AFLTIQEGCDKFCTFCVVPYTRG-IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLS 255 (469)
Q Consensus 178 a~ikI~~GC~~~CsfC~ip~~RG-~~rSr~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y~g~~~~-~~~~~l~~Ll~~l~ 255 (469)
|.|-||.=|.+.|+||-.....- +-+--+.++|.+|++.+.+.|++.|.|++ |.+-. .....+.+.++.+.
T Consensus 76 aPLYlSN~C~N~C~YCGf~~~N~i~R~~Ls~eEI~~E~~ai~~~G~k~ILLvt-------GE~~~~~~~~Yi~~~v~~ik 148 (371)
T PRK09240 76 TPLYLSNLCANDCTYCGFSMSNKIKRKTLDEEEIEREMAAIKKLGFEHILLVT-------GEHEAKVGVDYIRRALPLAR 148 (371)
T ss_pred ECHHHHCCCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEC-------CCCCCCCCHHHHHHHHHHHH
T ss_conf 50440222177887589867787630028999999999999976952388540-------57877698899999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCHHH---HHHHHHHHH-CCCCCC
Q ss_conf 0444300135442100010003665202211122013321114578998730333441146---789998740-134432
Q gi|255764472|r 256 EIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYR---QIIDRIRSV-RPDIAI 331 (469)
Q Consensus 256 ~i~~~~riR~~s~~P~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~---~~i~~~r~~-~p~~~i 331 (469)
+ .+ +-.+++-..++.+-.+.+.+.+ +-.+-+==+.-+...-+.|+-.....+|. +.-++.-++ +.++.|
T Consensus 149 ~---~f--~~v~iev~Pl~~eeY~~L~~aG--~d~~~vyQETY~~~~Y~~lHp~G~K~dy~~RL~a~eRa~~aGi~~vgi 221 (371)
T PRK09240 149 E---YF--SSVAIEVQPLSEEEYAELVELG--LDGVTVYQETYNPATYAKHHLRGPKQDFFYRLETPERAARAGIRKIGL 221 (371)
T ss_pred H---HC--CCEEEEECCCCHHHHHHHHHCC--CCEEEEEEHHCCHHHHHHHCCCCCCCCCHHHCCCHHHHHHCCCCEECE
T ss_conf 7---56--7407995259989999999859--986999603259999998588998545254523788898759970361
Q ss_pred CEEEECCCC
Q ss_conf 000001352
Q gi|255764472|r 332 SSDFIVGFP 340 (469)
Q Consensus 332 ~tdiIvGfP 340 (469)
++ ..|.-
T Consensus 222 Ga--LlGL~ 228 (371)
T PRK09240 222 GA--LLGLS 228 (371)
T ss_pred EE--EECCC
T ss_conf 10--22654
No 102
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=96.53 E-value=0.039 Score=35.68 Aligned_cols=193 Identities=16% Similarity=0.205 Sum_probs=112.5
Q ss_pred CCCCCC--HHHHHHHHHHHHHHHHHHHHHHHH---HCCCCEEEEECC-CCCEEEECCCCCCCCCCCHHHHHHHCCCCCCC
Q ss_conf 681110--012213764100588999887631---013310587314-54113411344431000216788620444300
Q gi|255764472|r 189 FCTFCV--VPYTRGIEISRSLSQVVDEARKLI---DNGVCEITLLGQ-NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVR 262 (469)
Q Consensus 189 ~CsfC~--ip~~RG~~rSr~~~~Iv~ei~~l~---~~G~kEi~L~g~-d~~~Y~g~~~~~~~~~l~~Ll~~l~~i~~~~r 262 (469)
.|-||. |.-.-|.+ +|+..++.|+.... ..-+..|.++|- |+++| +.|.+|++.|.+.. + .
T Consensus 38 GCDyCt~~V~E~~~~F--~pl~~v~~~v~~~L~f~~~~~~kitISgGGD~ScY---------P~l~eL~~~l~~~~-l-p 104 (404)
T TIGR03278 38 GCDYCTRSVWEINGDF--IPPQVVLGEVQTSLGFRTGRDTKVTISGGGDVSCY---------PELEELTKGLSDLG-L-P 104 (404)
T ss_pred CCCHHHHHHHHHCCCC--CCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCC---------CCHHHHHHHHHHCC-C-C
T ss_conf 8611314378654897--69799999999863456777228998079884416---------31999999998669-8-3
Q ss_pred CCCCCCCCCCCCC-HHHHHHCCCCCCCCCEEEEEECCCHHHHHH-HCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCC
Q ss_conf 1354421000100-036652022111220133211145789987-30333441146789998740134432000001352
Q gi|255764472|r 263 LRYTTSHPRDMSD-CLIKAHGDLDVLMPYLHLPVQSGSDRILKS-MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFP 340 (469)
Q Consensus 263 iR~~s~~P~~~~~-~li~~~~~~~~i~~~lhlpiQSgs~~vLk~-M~R~~~~e~~~~~i~~~r~~~p~~~i~tdiIvGfP 340 (469)
|+++|.--+.+++ +..+.+-+++ ..-.-..+=|.+++.-+. |+ ..++|.-++.++.+-+.+ ++.-. +|=.|
T Consensus 105 iHLGYTSGKGfd~~~~a~~li~~G--v~EVtfTVFatDp~LR~ewM~-D~~pE~SL~~L~~fc~~c-ev~~A---~ViiP 177 (404)
T TIGR03278 105 IHLGYTSGKGFDDPEIAEFLIDNG--VREVSFTVFATDPELRREWMK-DPTPEASLQCLRRFCESC-EVHAA---SVIIP 177 (404)
T ss_pred EEECCCCCCCCCCHHHHHHHHHCC--CCEEEEEEEECCHHHHHHHCC-CCCHHHHHHHHHHHHHHH-HHEEE---EEEEC
T ss_conf 574123788989879999999679--737999986089899998716-998688999999998441-11378---99806
Q ss_pred CCHH-HHHHHHHHHHHHHHHHHCCCHHE--EECCCHH---HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2012-47898863322101110020000--1112012---32143688989999999999999999999999
Q gi|255764472|r 341 GETD-DDFRATMDLVDKIGYAQAFSFKY--SPRLGTP---GSNMLEQVDENVKAERLLCLQKKLREQQVSFN 406 (469)
Q Consensus 341 gETe-edf~~Tl~~i~~~~~~~~~vf~y--S~r~gT~---Aa~m~~qV~~~vk~~R~~~l~~~~~~~~~~~~ 406 (469)
|=.+ |...+|+..+++..-.-+-.-+| +...|-- |--++++.+ .-..++.+++.+...+++
T Consensus 178 GVNDGevL~kT~~~Le~wGakg~ILMRFAN~~eqGLIL~N~Pii~gi~~-----htv~EF~~lV~e~~~~~~ 244 (404)
T TIGR03278 178 GVNDGDVLWKTCADLESWGAKALILMRFANTEEQGLILGNAPIIPGIKP-----HTVSEFKNIVRETHKEFP 244 (404)
T ss_pred CCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCEEECCCCCCCCCCC-----CCHHHHHHHHHHHHHHCC
T ss_conf 8685699999999999838756898740577444135568767688776-----778999999999998639
No 103
>COG1313 PflX Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins [General function prediction only]
Probab=96.37 E-value=0.016 Score=38.60 Aligned_cols=169 Identities=17% Similarity=0.256 Sum_probs=90.2
Q ss_pred CCCCCCCCCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCCCHHHHHHHCCC-
Q ss_conf 233244681110---0122137641005889998876310133105873145411341134443100021678862044-
Q gi|255764472|r 183 QEGCDKFCTFCV---VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK- 258 (469)
Q Consensus 183 ~~GC~~~CsfC~---ip~~RG~~rSr~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y~g~~~~~~~~~l~~Ll~~l~~i~- 258 (469)
=.||+++|-||. |-+ .|.-+-..+++..+-+..+.+.|++.|.|+|-|-+ ..++-.++.+.-..
T Consensus 125 FsgCnfrCVfCQNwdISq-~~~g~~v~~e~La~i~~~~~~~GakNvN~Vgg~Pt-----------p~lp~Ile~l~~~~~ 192 (335)
T COG1313 125 FSGCNFRCVFCQNWDISQ-FGIGKEVTPEDLAEIILELRRHGAKNVNFVGGDPT-----------PHLPFILEALRYASE 192 (335)
T ss_pred ECCCCEEEEEECCCCCCC-CCCCEEECHHHHHHHHHHHHHHCCCCEEECCCCCC-----------CCHHHHHHHHHHHHC
T ss_conf 647605899755765233-67880756999999999999825762100589998-----------753899999999742
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEE-EECCCHHHHHHHCCCC-CCCHHHHHHHH-HHHHCC---CCCCC
Q ss_conf 430013544210001000366520221112201332-1114578998730333-44114678999-874013---44320
Q gi|255764472|r 259 GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLP-VQSGSDRILKSMNRRH-TAYEYRQIIDR-IRSVRP---DIAIS 332 (469)
Q Consensus 259 ~~~riR~~s~~P~~~~~~li~~~~~~~~i~~~lhlp-iQSgs~~vLk~M~R~~-~~e~~~~~i~~-~r~~~p---~~~i~ 332 (469)
.+.-+.-+++ .++.|.++++...--++ || +--|+|+--. +| .+.+|.+++.+ ++.+.. ++-++
T Consensus 193 ~iPvvwNSnm---Y~s~E~l~lL~gvVDiy----L~DfKYgNdeca~----kySkvp~Y~eVv~rn~~~~~~~~g~~iiR 261 (335)
T COG1313 193 NIPVVWNSNM---YMSEETLKLLDGVVDIY----LPDFKYGNDECAE----KYSKVPNYWEVVTRNILEAKEQVGGLIIR 261 (335)
T ss_pred CCCEEEECCC---CCCHHHHHHHHCCCEEE----ECCCCCCCHHHHH----HHHCCCCHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 7987970687---44899999862602043----0432468889999----86058946899889999999742765888
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHH--HCCC-HHEEECCCHHHHHCC
Q ss_conf 0000135220124789886332210111--0020-000111201232143
Q gi|255764472|r 333 SDFIVGFPGETDDDFRATMDLVDKIGYA--QAFS-FKYSPRLGTPGSNML 379 (469)
Q Consensus 333 tdiIvGfPgETeedf~~Tl~~i~~~~~~--~~~v-f~yS~r~gT~Aa~m~ 379 (469)
-= =.||--+-=-..-++|+.+.-.. .+|| |+| ||--.|..++
T Consensus 262 HL---VlPghlecCTkpI~~wiae~~g~~~~vNiM~QY--~P~ykA~eyp 306 (335)
T COG1313 262 HL---VLPGHLECCTKPILRWIAENLGNDVRVNIMFQY--RPEYKAEEYP 306 (335)
T ss_pred EE---ECCCCHHHCCHHHHHHHHHHCCCCEEEEEHHHC--CCHHHHHHCH
T ss_conf 87---348842232589999999758987058753221--6235544244
No 104
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=0.0034 Score=43.60 Aligned_cols=71 Identities=23% Similarity=0.373 Sum_probs=47.0
Q ss_pred CEEEEEECCCCCCCCCCCCHHHHHH-----HHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCCCHH
Q ss_conf 2578741233244681110012213-----76410058899988763101331058731454113411344431000216
Q gi|255764472|r 176 VTAFLTIQEGCDKFCTFCVVPYTRG-----IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250 (469)
Q Consensus 176 ~~a~ikI~~GC~~~CsfC~ip~~RG-----~~rSr~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y~g~~~~~~~~~l~~L 250 (469)
...||. --|||.+|.||.++++.. .....+.++|+++++.+... .+-|+||| |.-+ ....+..|
T Consensus 23 ~~vFVR-~~GC~l~C~~Cdt~~t~~~~~~~~~~~~~~~~I~~~i~~~~~~-~~~V~lTG-------GEP~--~~~~l~~L 91 (212)
T COG0602 23 PSVFVR-FAGCNLRCPGCDTKYTWDFNYGKPGTPMSADEILADIKSLGYK-ARGVSLTG-------GEPL--LQPNLLEL 91 (212)
T ss_pred EEEEEE-CCCCCCCCCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHCCCC-CCEEEEEC-------CCCC--CCCCHHHH
T ss_conf 489997-6897887899898766063336898825899999999850888-76699818-------8646--62239999
Q ss_pred HHHHHCC
Q ss_conf 7886204
Q gi|255764472|r 251 LYSLSEI 257 (469)
Q Consensus 251 l~~l~~i 257 (469)
++.+.+.
T Consensus 92 l~~l~~~ 98 (212)
T COG0602 92 LELLKRL 98 (212)
T ss_pred HHHHHHC
T ss_conf 9999858
No 105
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A; InterPro: IPR013485 This entry consists of archaeal proteins which are predicted to be functionally equivalent to MoaA (molybdenum cofactor biosynthesis protein A) from bacteria (see IPR013483 from INTERPRO).; GO: 0046872 metal ion binding, 0006777 Mo-molybdopterin cofactor biosynthetic process.
Probab=96.12 E-value=0.059 Score=34.31 Aligned_cols=201 Identities=15% Similarity=0.254 Sum_probs=112.3
Q ss_pred EEECCCCCCCCCCCCHHHHHHHH----------HHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCCCH
Q ss_conf 74123324468111001221376----------41005889998876310133105873145411341134443100021
Q gi|255764472|r 180 LTIQEGCDKFCTFCVVPYTRGIE----------ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249 (469)
Q Consensus 180 ikI~~GC~~~CsfC~ip~~RG~~----------rSr~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y~g~~~~~~~~~l~~ 249 (469)
|.|..=||+.|=|| +.=|.. .--++|+|..=++...+-|++.|=||| |.=+ -+. |
T Consensus 14 is~T~~CN~~CfyC---H~EG~~~~~~r~gp~~~~Ls~eei~~~~~~a~~fGV~kvKlTG-------GEPl--LR~---D 78 (324)
T TIGR02668 14 ISVTDECNLSCFYC---HREGEDESRGRQGPGGNELSPEEIERIVRVASEFGVRKVKLTG-------GEPL--LRK---D 78 (324)
T ss_pred EEECCCCCCCCEEE---CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECC-------CCCC--HHH---H
T ss_conf 57734238642210---3678888888888864455899999999999870883277517-------8743--456---6
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCC-CCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHC--CCCCCCHHHHHHHHHHHHC
Q ss_conf 678862044430013544210001-0003665202211122013321114578998730--3334411467899987401
Q gi|255764472|r 250 LLYSLSEIKGLVRLRYTTSHPRDM-SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN--RRHTAYEYRQIIDRIRSVR 326 (469)
Q Consensus 250 Ll~~l~~i~~~~riR~~s~~P~~~-~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~--R~~~~e~~~~~i~~~r~~~ 326 (469)
|++.|..++.. .+.--||-=+.+ -+.+...+++.+ ..=.-+|+-|-|+..-+..= ++...+.+++-|+.+.++
T Consensus 79 ~~~Ii~~~~~~-~~~~vSmTTNG~LL~~~A~~Lk~AG--LdRVNVSLdtld~e~Y~kITG~~~~~~~~Vi~GI~~A~~~- 154 (324)
T TIGR02668 79 LIEIIRRIKDY-GIKDVSMTTNGILLEKLAKKLKEAG--LDRVNVSLDTLDPEKYKKITGQSRDALDRVIEGIESAVDA- 154 (324)
T ss_pred HHHHHHHHCCC-CCEEEECCCCHHHHHHHHHHHHHHC--CCEEEECCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHC-
T ss_conf 99999861467-5034420303144898999999828--5613120267886788864489986078999999999972-
Q ss_pred CCCC-CCEEEECCCCCCHHHH-HHHHHHHHHH-HHHHHCCCHHEEE-CCCHHHHHCC-CCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 3443-2000001352201247-8988633221-0111002000011-1201232143-6889899999999999999999
Q gi|255764472|r 327 PDIA-ISSDFIVGFPGETDDD-FRATMDLVDK-IGYAQAFSFKYSP-RLGTPGSNML-EQVDENVKAERLLCLQKKLREQ 401 (469)
Q Consensus 327 p~~~-i~tdiIvGfPgETeed-f~~Tl~~i~~-~~~~~~~vf~yS~-r~gT~Aa~m~-~qV~~~vk~~R~~~l~~~~~~~ 401 (469)
|++ +=-. +|=+-|.|+.+ +.+.++|+.+ -.=..+++==|-| ++|.-+..++ =++|-....+.+.++.......
T Consensus 155 -GL~PVKlN-~Vvl~G~N~~~~~~~m~~f~~~~~~g~~LQlIEl~~~~~G~~s~~~~~y~~d~~~ie~~l~~~A~~~~~r 232 (324)
T TIGR02668 155 -GLTPVKLN-MVVLKGINDNEEIPDMVEFAADYEGGAILQLIELMPPGEGENSKELKKYHIDIDPIEEELEKRADRVETR 232 (324)
T ss_pred -CCCCEEEE-EEEECCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHCCCHHHHHHHHHHHCCCCHHC
T ss_conf -89813788-8875477885007999999987515936898611268888872211423177378999999750411000
No 106
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=95.88 E-value=0.048 Score=35.01 Aligned_cols=149 Identities=15% Similarity=0.183 Sum_probs=76.3
Q ss_pred EEECCCCCCCCCCCCHHHHHH--HHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCC-CCCCCCCCHHHHHHHC
Q ss_conf 741233244681110012213--7641005889998876310133105873145411341134-4431000216788620
Q gi|255764472|r 180 LTIQEGCDKFCTFCVVPYTRG--IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGL-DGEKCTFSDLLYSLSE 256 (469)
Q Consensus 180 ikI~~GC~~~CsfC~ip~~RG--~~rSr~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y~g~~~-~~~~~~l~~Ll~~l~~ 256 (469)
|=||.=|.+.|+||.-..... +-+--+.++|.+|++.+.+.|+|.|.|. + |.+- ......+.+-++.+..
T Consensus 88 LYlSN~C~N~C~YCGF~~~Nk~i~Rk~Lt~eEi~~E~~al~~~G~krilLv------t-GE~p~~~~~~Yi~~~i~~iy~ 160 (471)
T PRK09613 88 LYISNYCVNNCVYCGFRRSNKELKRKKLTQEEIREEVKALESMGHKRLALV------A-GEHPVNCDIDYILESIKTIYS 160 (471)
T ss_pred HHHHCCCCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEE------E-CCCCCCCCHHHHHHHHHHHHH
T ss_conf 112033367875378747787776337899999999999997697318987------1-468887988999999999987
Q ss_pred CC-CCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCHH---HHHHHHHHHH-CCCCCC
Q ss_conf 44-430013544210001000366520221112201332111457899873033344114---6789998740-134432
Q gi|255764472|r 257 IK-GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEY---RQIIDRIRSV-RPDIAI 331 (469)
Q Consensus 257 i~-~~~riR~~s~~P~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~---~~~i~~~r~~-~p~~~i 331 (469)
+. +.--||-.+++...++.+-...+.+.+ + -.+-+==++=+...-+.|+-.....+| ++..++.-++ +.++.+
T Consensus 161 ~~~~~g~IrrvnVei~Pl~~eeY~~L~~aG-i-gt~~vfQETYh~~tY~~~Hp~GpK~dy~~RL~a~dRA~~AGi~dVGi 238 (471)
T PRK09613 161 TKNGNGEIRRVNVNIAPTTVENYKKLKEAG-I-GTYQLFQETYHKPTYEKMHPAGPKSNYDWRLTAMDRAMEAGIDDVGI 238 (471)
T ss_pred HCCCCCCEEEEEEEECCCCHHHHHHHHHCC-C-CEEEEEEEECCHHHHHHHCCCCCCCCCHHHCCCHHHHHHCCCCEECC
T ss_conf 524678533688994479869999999869-9-96999863078878998587898656333415788898759971360
Q ss_pred CEEEECCC
Q ss_conf 00000135
Q gi|255764472|r 332 SSDFIVGF 339 (469)
Q Consensus 332 ~tdiIvGf 339 (469)
+. ..|.
T Consensus 239 Ga--LlGL 244 (471)
T PRK09613 239 GV--LFGL 244 (471)
T ss_pred HH--EECC
T ss_conf 02--0265
No 107
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]
Probab=95.73 E-value=0.024 Score=37.31 Aligned_cols=159 Identities=18% Similarity=0.291 Sum_probs=87.1
Q ss_pred EEEEECCCCCCCCCCCCH-HHHHHHHHH-------HHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCCCH
Q ss_conf 787412332446811100-122137641-------005889998876310133105873145411341134443100021
Q gi|255764472|r 178 AFLTIQEGCDKFCTFCVV-PYTRGIEIS-------RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSD 249 (469)
Q Consensus 178 a~ikI~~GC~~~CsfC~i-p~~RG~~rS-------r~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y~g~~~~~~~~~l~~ 249 (469)
.-|=|.-=||..|-||-+ +.-+|+-.. .+.++|+.|+...-+.|+ -+| ||+-+- .-.+..+
T Consensus 30 lVlFvTG~C~~~CfYCPvs~~r~gkdviyaNErpV~~~eDii~ea~~~~a~Ga---siT-------GGdPl~-~ieR~~~ 98 (353)
T COG2108 30 LVLFVTGLCNRSCFYCPVSDERKGKDVIYANERPVKSVEDIIEEAKLMDALGA---SIT-------GGDPLL-EIERTVE 98 (353)
T ss_pred EEEEEECCCCCCCCCCCCCHHHCCCCCEEECCCCCCCHHHHHHHHHHHCCCCC---CCC-------CCCHHH-HHHHHHH
T ss_conf 69999556689852576877764886331156314757889999997246665---332-------787489-9999999
Q ss_pred HHHHHHCCCC-CCCCCCCCCCCCCCCCHHHHHHCCCC--CCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHC
Q ss_conf 6788620444-30013544210001000366520221--11220133211145789987303334411467899987401
Q gi|255764472|r 250 LLYSLSEIKG-LVRLRYTTSHPRDMSDCLIKAHGDLD--VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 (469)
Q Consensus 250 Ll~~l~~i~~-~~riR~~s~~P~~~~~~li~~~~~~~--~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~~~r~~~ 326 (469)
.++.+.+..| .+.+++ |.++...+++.+..+.+.+ .+ -||.| +-+|- ..+.+.+.+...++..
T Consensus 99 ~ir~LK~efG~~fHiHL-YT~g~~~~~e~l~~L~eAGLDEI--RfHp~-~~~~~----------~~e~~i~~l~~A~~~g 164 (353)
T COG2108 99 YIRLLKDEFGEDFHIHL-YTTGILATEEALKALAEAGLDEI--RFHPP-RPGSK----------SSEKYIENLKIAKKYG 164 (353)
T ss_pred HHHHHHHHHCCCEEEEE-EECCCCCCHHHHHHHHHCCCCEE--EECCC-CCCCC----------CCHHHHHHHHHHHHHC
T ss_conf 99999876353205998-40665688899999986798759--94689-72112----------3189999999999828
Q ss_pred CCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCH
Q ss_conf 344320000013522012478988633221011100200
Q gi|255764472|r 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365 (469)
Q Consensus 327 p~~~i~tdiIvGfPgETeedf~~Tl~~i~~~~~~~~~vf 365 (469)
-++.+-+ =.-||| ++.+.+-.+++.+..++.+|+-
T Consensus 165 ~dvG~Ei---Paipg~-e~~i~e~~~~~~~~~~~FlNiN 199 (353)
T COG2108 165 MDVGVEI---PAIPGE-EEAILEFAKALDENGLDFLNIN 199 (353)
T ss_pred CCCEEEC---CCCCCH-HHHHHHHHHHHHHCCCCEEEEE
T ss_conf 5510432---788656-8899999999876066534210
No 108
>TIGR02351 thiH thiazole biosynthesis protein ThiH; InterPro: IPR012726 Members of this protein family are the ThiH proteins involved in thiamine biosynthesis. They are homologues of the BioB protein of biotin biosynthesis. Genes encoding these proteins are generally found in operons with other thiamin biosynthesis genes. ; GO: 0005506 iron ion binding, 0051539 4 iron 4 sulfur cluster binding, 0009228 thiamin biosynthetic process.
Probab=94.27 E-value=0.03 Score=36.54 Aligned_cols=48 Identities=19% Similarity=0.426 Sum_probs=37.1
Q ss_pred EEE--ECCCCCCCCCCCCHHHHHH-H--HHHHHHHHHHHHHHHHHHCC-CCEEEEE
Q ss_conf 874--1233244681110012213-7--64100588999887631013-3105873
Q gi|255764472|r 179 FLT--IQEGCDKFCTFCVVPYTRG-I--EISRSLSQVVDEARKLIDNG-VCEITLL 228 (469)
Q Consensus 179 ~ik--I~~GC~~~CsfC~ip~~RG-~--~rSr~~~~Iv~ei~~l~~~G-~kEi~L~ 228 (469)
|+| ||-=|.+.|+||- |-.. + =+--.-++|.+|++...+.| +++|.|+
T Consensus 76 f~PLYlSN~C~N~C~YCG--F~~~NKIkR~~Ln~~Ei~~E~~aI~k~gPf~~iLlv 129 (378)
T TIGR02351 76 FTPLYLSNYCSNKCVYCG--FSMSNKIKRKKLNEEEIEREIEAIKKSGPFKEILLV 129 (378)
T ss_pred HHHHHHHHCCCCCCCCCC--CCCCCCHHHCCCCHHHHHHHHHHHHHCCCCHHEEEE
T ss_conf 133456541487521046--578673020048888999999998620770130011
No 109
>TIGR00238 TIGR00238 lysine 2,3-aminomutase YodO family protein; InterPro: IPR003739 This family represents essentially the whole of the Escherichia coli YjeK family and of some of its apparent orthologs. YodO in Bacillus subtilis, a family member which is a longer protein by an additional 100 residues, is characterised as a lysine 2,3-aminomutase with iron, sulphide and pyridoxal 5'-phosphate groups . The homologue, MJ0634 from M. jannaschii, is preceded by nearly 200 C-terminal residues. This family shows similarity to molybdenum cofactor biosynthesis protein MoaA and related proteins..
Probab=94.14 E-value=0.066 Score=33.99 Aligned_cols=135 Identities=19% Similarity=0.288 Sum_probs=82.6
Q ss_pred CCEEEEEECCCCCCCCCCCCH----HHHHHHHH-HHHHHHHHHHHHHHHHC-CCCEEEEECCCCCEEEECCCCCCCCCCC
Q ss_conf 725787412332446811100----12213764-10058899988763101-3310587314541134113444310002
Q gi|255764472|r 175 GVTAFLTIQEGCDKFCTFCVV----PYTRGIEI-SRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDGEKCTFS 248 (469)
Q Consensus 175 ~~~a~ikI~~GC~~~CsfC~i----p~~RG~~r-Sr~~~~Iv~ei~~l~~~-G~kEi~L~g~d~~~Y~g~~~~~~~~~l~ 248 (469)
+.++.+.+..||+..|.||.- ...-+..- ..|-...-..+..+.+. -..|+.++| |+.+-.....+.
T Consensus 130 ~~~~~~~~~~~c~~~c~yc~~~w~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~g-------gdp~~~~d~~~~ 202 (357)
T TIGR00238 130 PNRALFLPKGGCAVNCRYCFRNWLVRHFPYKEGPGNPKKKWEAALDYIAEHPELEEVLFSG-------GDPLLLKDHELE 202 (357)
T ss_pred HCEEEEEECCCCCHHHHHHHHCCHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHEEEC-------CCCCCCCHHHHH
T ss_conf 0013466416640223333320011004510036773678999999874041023320107-------876310057899
Q ss_pred HHHHHHHCCCCCCCCCCCCCC----CCCCCCHHHHHHCCCC-CC--CCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 167886204443001354421----0001000366520221-11--2201332111457899873033344114678999
Q gi|255764472|r 249 DLLYSLSEIKGLVRLRYTTSH----PRDMSDCLIKAHGDLD-VL--MPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDR 321 (469)
Q Consensus 249 ~Ll~~l~~i~~~~riR~~s~~----P~~~~~~li~~~~~~~-~i--~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~~ 321 (469)
.++..+..++.+.++|+++-- |..+++++.++++... .+ ..|+. +.. --.+.+.+.+.+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~----~~~----------~~~~~~~~~~~~ 268 (357)
T TIGR00238 203 WLLKELESIPHLEGLRIGTRLPVVIPQRITDELCELLGKFELPLLLVTHIN----HCN----------EITEEFAEAVEK 268 (357)
T ss_pred HHHHHHHHCCCHHEEEECCCCCEEEHHHHHHHHHHHHHHHHHHHHEEECCC----CCH----------HCCHHHHHHHHH
T ss_conf 999987533401002202322011004668999998753322110000024----301----------103789999998
Q ss_pred HHHHCCCCCCC
Q ss_conf 87401344320
Q gi|255764472|r 322 IRSVRPDIAIS 332 (469)
Q Consensus 322 ~r~~~p~~~i~ 332 (469)
++.. ++.+.
T Consensus 269 l~~~--~~~~~ 277 (357)
T TIGR00238 269 LRTV--GVTLL 277 (357)
T ss_pred HHHC--CCCCC
T ss_conf 8752--65000
No 110
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=93.99 E-value=0.42 Score=27.99 Aligned_cols=84 Identities=29% Similarity=0.392 Sum_probs=49.6
Q ss_pred HHHHHHHHCCCEECCC--------------CCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 9999999879868776--------------01088999927832507999999999999987676642189818999647
Q gi|255764472|r 43 RMEDMFFSQGYERVNS--------------MDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGC 108 (469)
Q Consensus 43 ~i~~~L~~~G~~~~~~--------------~~~ADviiINTCsV~~~ae~k~~~~i~~~~~~~~~~~k~~p~~~IvVtGC 108 (469)
.+...|+..||....- ..++|++-+ ||..+... .....+.+++ .+..++.+|+++|.
T Consensus 18 ~v~~~l~~~g~~v~~lg~~~~~e~~v~~~~~~~~dvVgi-S~~~~~~~--~~~~~~~~~~------~~~~~~v~vv~GG~ 88 (125)
T cd02065 18 IVAIALRDNGFEVIDLGVDVPPEEIVEAAKEEDADVVGL-SALSTTHM--EAMKLVIEAL------KELGIDIPVVVGGA 88 (125)
T ss_pred HHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHCCCEEEE-ECCHHHHH--HHHHHHHHHH------HHCCCCCEEEECCC
T ss_conf 999999978998998999889999999998608999998-52113018--9999999999------96799875997588
Q ss_pred CCCCCHHHHHHHHCCCCCC-CCCHHHCCHHHHHH
Q ss_conf 3010878898741001100-11001113168887
Q gi|255764472|r 109 VAQAEGEEILRRSPIVNVV-VGPQTYYRLPELLE 141 (469)
Q Consensus 109 ~aq~~~e~l~~~~p~vd~v-ig~~~~~~i~~~i~ 141 (469)
++...+++ +.+|.+ +|.++.. .+++++
T Consensus 89 ~~t~~~~~-----~~~d~v~~Gege~~-~~~~~~ 116 (125)
T cd02065 89 HPTADPEE-----PKVDAVVIGEGEYA-GPALLE 116 (125)
T ss_pred CCCCCHHH-----HCCCEEEECCEEEE-HHHHHH
T ss_conf 79867355-----27675757784582-518887
No 111
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=93.18 E-value=0.45 Score=27.73 Aligned_cols=149 Identities=14% Similarity=0.096 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHHHHH----CCCCEEEEECCCCCEEEECCCCCCCCCCCHHHHHHHCCCCCCCCCC-CCCCCCCCCCHH
Q ss_conf 41005889998876310----1331058731454113411344431000216788620444300135-442100010003
Q gi|255764472|r 203 ISRSLSQVVDEARKLID----NGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRY-TTSHPRDMSDCL 277 (469)
Q Consensus 203 rSr~~~~Iv~ei~~l~~----~G~kEi~L~g~d~~~Y~g~~~~~~~~~l~~Ll~~l~~i~~~~riR~-~s~~P~~~~~~l 277 (469)
+..++++|++++..-.. .| -=|.|+| |.-+ ....-+.+|++++.+.. +-- -+ +|.+.. .+.+
T Consensus 17 ~~~tveel~~~i~kd~~fy~~Sg-GGVT~SG-------GEpl-~Q~~F~~ellk~~k~~g-iht-aieTsG~~~--~~~~ 83 (213)
T PRK10076 17 RDISLDALEREVMKDDIFFRTSG-GGVTLSG-------GEVL-MQAEFATRFLQRLRLWG-VSC-AIETAGDAP--ASKL 83 (213)
T ss_pred EEEEHHHHHHHHHHHHHHHHCCC-CEEEEEC-------CHHH-CCHHHHHHHHHHHHHCC-CCE-EEECCCCCC--HHHH
T ss_conf 68109999999997199982479-8078607-------5263-59999999999998669-988-997688888--9999
Q ss_pred HHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHH
Q ss_conf 66520221112201332111457899873033344114678999874013443200000135220124789886332210
Q gi|255764472|r 278 IKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357 (469)
Q Consensus 278 i~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~~~r~~~p~~~i~tdiIvGfPgETeedf~~Tl~~i~~~ 357 (469)
.+++.-.+- +=+-+-|.++..-+..- +.+.+.+++-++.+.+.-..+.++.-+|-|| .-++|+.+.+.+|++++
T Consensus 84 ~~~~~~~Dl----~L~DiK~~d~~~h~~~T-G~~n~~il~Nl~~l~~~~~~v~iR~pvIPg~-nd~~e~i~~~~~f~~~l 157 (213)
T PRK10076 84 LPLAKLCDE----VLFDLKIMDATQARDVV-KMNLPRVLENLRLLVSEGVNVIPRLPLIPGF-TLSRENMQQALDVLIPL 157 (213)
T ss_pred HHHHHHCCE----EEEEECCCCHHHHHHHH-CCCHHHHHHHHHHHHHCCCCEEEEEEEECCC-CCCHHHHHHHHHHHHHC
T ss_conf 999984598----99861779848999997-9993999999999996799689988677997-89999999999999986
Q ss_pred HHHHCCCHHEEEC
Q ss_conf 1110020000111
Q gi|255764472|r 358 GYAQAFSFKYSPR 370 (469)
Q Consensus 358 ~~~~~~vf~yS~r 370 (469)
....+++-||-+-
T Consensus 158 ~v~~veLLPYH~~ 170 (213)
T PRK10076 158 NIRQIHLLPFHQY 170 (213)
T ss_pred CCCEEEECCCCHH
T ss_conf 9977997188413
No 112
>PRK12336 translation initiation factor IF-2 subunit beta; Provisional
Probab=92.47 E-value=0.68 Score=26.38 Aligned_cols=55 Identities=24% Similarity=0.364 Sum_probs=41.5
Q ss_pred CCCEEEEEEECCCCCCCEEEEECCCCCEEEECCCCCCCCCEEEEEEEEEECCEEEEEEE
Q ss_conf 79789999842568086899998786288973887676888999999830873899994
Q gi|255764472|r 410 VGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 (469)
Q Consensus 410 iG~~~~Vlve~~~~~~~~~~G~t~~~~~V~~~~~~~~~G~~v~V~I~~~~~~~L~G~vi 468 (469)
-|++.+|-|++.+.+ |.=+|+-..| ++|. .++.+|+.|+|+|+.+....-+|+++
T Consensus 147 eG~~y~v~I~~~g~~-GdGia~i~gf--~vfV-p~a~~Ge~v~v~I~~v~~~~af~e~~ 201 (201)
T PRK12336 147 EGKTYEVEIESTGSK-GDGVAKIGKY--TIFV-PGAKKGQVVKVKIKKISGTLAFAERA 201 (201)
T ss_pred CCCEEEEEEEECCCC-CCCEEEECCE--EEEE-CCCCCCCEEEEEEEEEECCEEEEEEC
T ss_conf 796899999973667-6547998898--9995-89987988999999961635788709
No 113
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family; InterPro: IPR012839 This subset of the radical-SAM domain includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centred radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4 from EC, IPR012838 from INTERPRO) and the anaerobic ribonucleotide reductase activating enzyme (IPR012837 from INTERPRO). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in Escherichia coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterisation and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain, which follows a conserved group of three cysteines and contains a variable pattern of 0 to 8 additional cysteines..
Probab=92.39 E-value=0.69 Score=26.37 Aligned_cols=63 Identities=16% Similarity=0.304 Sum_probs=48.0
Q ss_pred CCCCCHHHHHHHHHHHHC----CCCCCCEEEECCCCCCHHHHHHHHHHHHHHH-H--HHHCCCHHEEECCCH
Q ss_conf 334411467899987401----3443200000135220124789886332210-1--110020000111201
Q gi|255764472|r 309 RHTAYEYRQIIDRIRSVR----PDIAISSDFIVGFPGETDDDFRATMDLVDKI-G--YAQAFSFKYSPRLGT 373 (469)
Q Consensus 309 ~~~~e~~~~~i~~~r~~~----p~~~i~tdiIvGfPgETeedf~~Tl~~i~~~-~--~~~~~vf~yS~r~gT 373 (469)
+.+.+.+++=++.|.+.. ..+.|++-+|=|| .-++|+++.+.+|+.+. . ...+|+-||= +=|.
T Consensus 201 G~~N~~IL~NL~~L~~~~~~GG~~v~iR~PvIpG~-Nds~~~i~a~~~f~~~~~~~N~~~i~LLPyH-~lG~ 270 (305)
T TIGR02494 201 GVDNELILENLEALLAAGKDGGKNVVIRIPVIPGF-NDSEENIEAIAEFLRKLLPGNVKEIDLLPYH-RLGE 270 (305)
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCC-CCCHHHHHHHHHHHHHHHCCCCCEEEECCCH-HHHH
T ss_conf 89837899999999971788995589987204898-9898999999999998517897656744860-5567
No 114
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=92.04 E-value=1.1 Score=24.92 Aligned_cols=104 Identities=20% Similarity=0.301 Sum_probs=61.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCEECCC--------------CCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99995798568878999999999879868776--------------0108899992783250799999999999998767
Q gi|255764472|r 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYERVNS--------------MDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKN 92 (469)
Q Consensus 27 v~i~TlGC~~N~~Dse~i~~~L~~~G~~~~~~--------------~~~ADviiINTCsV~~~ae~k~~~~i~~~~~~~~ 92 (469)
+-+-+.|.----.-...++..|+..||+.+.- .++||++-+.+=+ ..+..-+...+..+++
T Consensus 2 vliak~g~DgHd~G~~iva~~l~d~GfeVi~lG~~~s~eeiv~~A~~e~ad~IglSsL~--g~h~~~~~~l~~~L~e--- 76 (122)
T cd02071 2 ILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQTPEEIVEAAIQEDVDVIGLSSLS--GGHMTLFPEVIELLRE--- 76 (122)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEECCC--CCHHHHHHHHHHHHHH---
T ss_conf 79996478622877999999999789769967998899999999997399899996465--5447899999999997---
Q ss_pred HHHHCCCCCEEEEECCCCCCCHHHHHHHHCCCCCCCCCHHHCCHHHHHHH
Q ss_conf 66421898189996473010878898741001100110011131688875
Q gi|255764472|r 93 SRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELLER 142 (469)
Q Consensus 93 ~~~k~~p~~~IvVtGC~aq~~~e~l~~~~p~vd~vig~~~~~~i~~~i~~ 142 (469)
+...+.+|+++|-.|...-+++.+ -+++.++|++. .+.+.++.
T Consensus 77 ---~G~~di~v~vGG~Ip~~d~~~l~~--~Gv~~vf~pgt--~~~~iv~~ 119 (122)
T cd02071 77 ---LGAGDILVVGGGIIPPEDYELLKE--MGVAEIFGPGT--SIEEIIDK 119 (122)
T ss_pred ---CCCCCCEEEEECCCCHHHHHHHHH--CCCCEEECCCC--CHHHHHHH
T ss_conf ---699984699945649899999997--79988989588--99999999
No 115
>KOG2876 consensus
Probab=91.76 E-value=0.17 Score=31.00 Aligned_cols=58 Identities=21% Similarity=0.309 Sum_probs=42.3
Q ss_pred EEEEEC--CCCCCCCCCCCHHHHH---HHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEE
Q ss_conf 787412--3324468111001221---376410058899988763101331058731454113
Q gi|255764472|r 178 AFLTIQ--EGCDKFCTFCVVPYTR---GIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW 235 (469)
Q Consensus 178 a~ikI~--~GC~~~CsfC~ip~~R---G~~rSr~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y 235 (469)
.|+.|+ +-||.+|-||.+--.| -+-+--...+|++=+..++.+|+..+.|||-+-+.+
T Consensus 11 tyLrislte~cnlrc~ycMpseg~~l~pk~~~lav~eilrl~~lF~~qgv~knrLtggeptIr 73 (323)
T KOG2876 11 TYLRISLTEKCNLRCQYCMPSEGVPLKPKRKLLAVSEILRLAGLFAPQGVDKNRLTGGEPLIR 73 (323)
T ss_pred HHHHHHHHHCCCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 521065552007312120120077576410000024467764356675501554057887410
No 116
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=90.79 E-value=1.4 Score=24.03 Aligned_cols=100 Identities=18% Similarity=0.238 Sum_probs=54.7
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHCCCEECCC--------------CCCCCEEEEECCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 0799995798568878999999999879868776--------------01088999927832507999999999999987
Q gi|255764472|r 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNS--------------MDDADLIVLNTCHIREKAAEKVYSFLGRIRNL 90 (469)
Q Consensus 25 kkv~i~TlGC~~N~~Dse~i~~~L~~~G~~~~~~--------------~~~ADviiINTCsV~~~ae~k~~~~i~~~~~~ 90 (469)
.|+-+-+.|=-.--.-...++..|...||+.++- .++||++.+.+=+= .++.-+......++
T Consensus 4 ~~vvi~~~g~D~Hd~G~~iva~~l~~~GfeVi~lG~~~~pe~~v~~A~~~~ad~igiSsl~G--~~~~~~~~l~~~l~-- 79 (137)
T PRK02261 4 PTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAIETDADAILVSSLYG--HGEIDCRGLREKCI-- 79 (137)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCCEEEECCCCC--CCCHHHHHHHHHHH--
T ss_conf 87999821886117889999999997897498468879999999999873999999711112--66127999999999--
Q ss_pred HHHHHHCCCCCEEEEECCC--CCCCHHHHHHHH--CCCCCCCCCHH
Q ss_conf 6766421898189996473--010878898741--00110011001
Q gi|255764472|r 91 KNSRIKEGGDLLVVVAGCV--AQAEGEEILRRS--PIVNVVVGPQT 132 (469)
Q Consensus 91 ~~~~~k~~p~~~IvVtGC~--aq~~~e~l~~~~--p~vd~vig~~~ 132 (469)
. +...+..|+++|-. ++..|++..+.+ -++|.++|++.
T Consensus 80 -~---~g~~di~vvvGG~i~i~~~dp~~~~~~L~~~Gv~~VF~pGT 121 (137)
T PRK02261 80 -E---AGLGDILLYVGGNLVVGKHDFEEVEKKFKEMGFDRVFAPGT 121 (137)
T ss_pred -H---CCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCEEECCCC
T ss_conf -6---79999969983621678878399999999779798879788
No 117
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB; InterPro: IPR005980 NifB is a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack most of the C-terminal region and are excluded from this model.; GO: 0009108 coenzyme biosynthetic process, 0009399 nitrogen fixation.
Probab=90.77 E-value=1.4 Score=24.02 Aligned_cols=204 Identities=17% Similarity=0.248 Sum_probs=122.0
Q ss_pred EEECCCCCCCCCCCCHHH-----HH-H-HHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCCCHHHH
Q ss_conf 741233244681110012-----21-3-7641005889998876310133105873145411341134443100021678
Q gi|255764472|r 180 LTIQEGCDKFCTFCVVPY-----TR-G-IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252 (469)
Q Consensus 180 ikI~~GC~~~CsfC~ip~-----~R-G-~~rSr~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y~g~~~~~~~~~l~~Ll~ 252 (469)
|.|+-+||--|.||-=+| .| | -+.--.|++-++.++..+.+ ++.+-.+|.= -= |+-+..-+.+|..|..
T Consensus 28 ~AVApACNiQCNYCNRKyDC~NESRPGV~S~~LtP~qA~~k~~~VA~~-i~QLSVvGIA--GP-GDpLan~~~Tf~Tl~~ 103 (461)
T TIGR01290 28 LAVAPACNIQCNYCNRKYDCANESRPGVVSELLTPEQALAKVKAVAAE-IPQLSVVGIA--GP-GDPLANIKKTFQTLEL 103 (461)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH-CCCCEEEEEC--CC-CCCCCCCCCCHHHHHH
T ss_conf 421443345545568641667888876201346848999999999850-6753156325--78-8624575000899999
Q ss_pred HHHCCCCCCCCCCCCCCCCCC-CCHHHHHHCCCCCCCCCEEEEEECCCHHHHHH-------HCCCCCCCHHHHHH-----
Q ss_conf 862044430013544210001-00036652022111220133211145789987-------30333441146789-----
Q gi|255764472|r 253 SLSEIKGLVRLRYTTSHPRDM-SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS-------MNRRHTAYEYRQII----- 319 (469)
Q Consensus 253 ~l~~i~~~~riR~~s~~P~~~-~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~-------M~R~~~~e~~~~~i----- 319 (469)
--.++|++ .+.+|+ +.+ .++++|-+.+.. .-|.-|-+=.-||+|=++ =+++|+=-+.-+++
T Consensus 104 v~~~~PDv-klCLST---NGL~LP~~vDrlvdlg--vdHVTiTiN~iDP~vG~~IYpWv~y~G~RY~Gr~Aa~lL~erQl 177 (461)
T TIGR01290 104 VAREVPDV-KLCLST---NGLALPEHVDRLVDLG--VDHVTITINAIDPEVGEKIYPWVAYEGKRYTGREAAKLLIERQL 177 (461)
T ss_pred HHHHCCCE-EEECCC---CCCCCHHHHHHHHHCC--CCCEEEEECCCCHHHHCEECCCEEECCCCCCHHHHHHHHHHHHH
T ss_conf 98517821-420012---6563134652464238--88179883140635510306523326733354899999899999
Q ss_pred ---HHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEECC--CHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf ---9987401344320000013522012478988633221011100200001112--01232143688989999999999
Q gi|255764472|r 320 ---DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRL--GTPGSNMLEQVDENVKAERLLCL 394 (469)
Q Consensus 320 ---~~~r~~~p~~~i~tdiIvGfPgETeedf~~Tl~~i~~~~~~~~~vf~yS~r~--gT~Aa~m~~qV~~~vk~~R~~~l 394 (469)
+.|-++---+-+.+=+| ||=.|++..+-=+.+++..--.=||-|---+| || -|.+.+|-.+.. .+|
T Consensus 178 ~G~~~L~ergiL~KvNSvlI---PGiND~HL~eVsk~vk~~GAfLHNvmPLis~PeHGt-~ygl~Gq~~P~~-----~el 248 (461)
T TIGR01290 178 EGLEKLTERGILVKVNSVLI---PGINDEHLVEVSKKVKELGAFLHNVMPLISAPEHGT-VYGLNGQRAPAP-----SEL 248 (461)
T ss_pred HHHHHHHHCCCEEEECCEEC---CCCCCHHHHHHHHHHHCCCCHHCCCCCCEECCCCCC-CCCCCCCCCCCH-----HHH
T ss_conf 99999973885488800643---898817899987775104640005442101489883-116787888898-----999
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q gi|255764472|r 395 QKKLREQQ 402 (469)
Q Consensus 395 ~~~~~~~~ 402 (469)
..+.+++.
T Consensus 249 ~~l~~~l~ 256 (461)
T TIGR01290 249 KALRDRLE 256 (461)
T ss_pred HHHHHHHC
T ss_conf 99999707
No 118
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=90.45 E-value=1.5 Score=23.82 Aligned_cols=17 Identities=24% Similarity=0.432 Sum_probs=12.5
Q ss_pred HHHCCCEEEEEEECCCC
Q ss_conf 98579789999842568
Q gi|255764472|r 407 DACVGQIIEVLIEKHGK 423 (469)
Q Consensus 407 ~~~iG~~~~Vlve~~~~ 423 (469)
.+..|++-++|+-+.+.
T Consensus 576 ~~~~GrrprilvaKmGq 592 (715)
T PRK09426 576 AEAEGRRPRILVAKMGQ 592 (715)
T ss_pred HHHHCCCCEEEEECCCC
T ss_conf 99719997699962798
No 119
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E; InterPro: IPR011843 This entry describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.; GO: 0051539 4 iron 4 sulfur cluster binding, 0018189 pyrroloquinoline quinone biosynthetic process.
Probab=90.32 E-value=1.5 Score=23.75 Aligned_cols=203 Identities=13% Similarity=0.238 Sum_probs=112.8
Q ss_pred EEECCCCCCCCCCCCHHH--HHH-H-HHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCCCHHHHHHH
Q ss_conf 741233244681110012--213-7-641005889998876310133105873145411341134443100021678862
Q gi|255764472|r 180 LTIQEGCDKFCTFCVVPY--TRG-I-EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255 (469)
Q Consensus 180 ikI~~GC~~~CsfC~ip~--~RG-~-~rSr~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y~g~~~~~~~~~l~~Ll~~l~ 255 (469)
+++.-=||=.|=||+=|. .|- + +-.-.--+|++|++.| |+-.+-|. ||. +.-+..|.+|++.-.
T Consensus 11 aELThRCPL~CPYCSNPLel~R~~~EL~T~~W~~Vl~qAa~l---GvlqlHfS-------GGE--P~aR~DL~eLv~~A~ 78 (363)
T TIGR02109 11 AELTHRCPLQCPYCSNPLELARRKAELTTEEWTDVLTQAAEL---GVLQLHFS-------GGE--PLARPDLVELVAHAR 78 (363)
T ss_pred HHHHHCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHC---CCEEEECC-------CCC--CCCCCCHHHHHHHHH
T ss_conf 998725888777989706888511468888999999999853---90675130-------776--663357799999997
Q ss_pred CCCCCCCCC-CCCCCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHC-CCCCCCHHHHHHHHHHHHCCCCCCCE
Q ss_conf 044430013-5442100010003665202211122013321114578998730-33344114678999874013443200
Q gi|255764472|r 256 EIKGLVRLR-YTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN-RRHTAYEYRQIIDRIRSVRPDIAISS 333 (469)
Q Consensus 256 ~i~~~~riR-~~s~~P~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~-R~~~~e~~~~~i~~~r~~~p~~~i~t 333 (469)
.+. ++ .. |+| --.++++=++.+++.+ .-|+.||||-.++..=.++. -+.--++=+++.+.+++. |+=++-
T Consensus 79 ~LG-lY-tNLITS--GvGLt~~rl~~L~~aG--LDHvQlSfQ~vd~~~a~~iaG~k~A~~~Kl~~A~~v~~~--g~PltL 150 (363)
T TIGR02109 79 RLG-LY-TNLITS--GVGLTEARLDALADAG--LDHVQLSFQGVDEALADRIAGLKNAFEQKLAVARAVKAA--GLPLTL 150 (363)
T ss_pred HCC-CC-HHHHHH--HHHHHHHHHHHHHHCC--CCEEEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHC--CCCEEE
T ss_conf 758-70-146776--3456799999997579--857887641478788864125025899999999999961--898176
Q ss_pred EEEC--CCCCCHHHHHHHHHHHHHHHHHHHCCCH--HEEE--CCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0001--3522012478988633221011100200--0011--12012321436889899999999999999999999999
Q gi|255764472|r 334 DFIV--GFPGETDDDFRATMDLVDKIGYAQAFSF--KYSP--RLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFND 407 (469)
Q Consensus 334 diIv--GfPgETeedf~~Tl~~i~~~~~~~~~vf--~yS~--r~gT~Aa~m~~qV~~~vk~~R~~~l~~~~~~~~~~~~~ 407 (469)
.|.+ +-=++.++-++-.++| .-++|=|. +|+= -.+ .|+=| |...--+|+.++-+. +.+
T Consensus 151 N~V~HR~Ni~~i~~~i~La~~L----~AdrvE~A~~QyYGWA~~N-R~aLl----Pt~~Ql~~a~r~V~~-------aRe 214 (363)
T TIGR02109 151 NFVLHRHNIDQIPEIIELAIEL----GADRVELATTQYYGWALLN-RAALL----PTREQLEEATRIVEE-------ARE 214 (363)
T ss_pred EHCCCCCHHHHHHHHHHHHHHC----CCCEEEEEEECCHHHHHHH-HHHCC----CCHHHHHHHHHHHHH-------HHH
T ss_conf 0200242021367899999863----8984888740202256774-54248----988999999999999-------999
Q ss_pred HHCCC---EEEEEE
Q ss_conf 85797---899998
Q gi|255764472|r 408 ACVGQ---IIEVLI 418 (469)
Q Consensus 408 ~~iG~---~~~Vlv 418 (469)
++-|. ..=++|
T Consensus 215 r~~g~~~~~~l~yV 228 (363)
T TIGR02109 215 RLKGQGNPLSLDYV 228 (363)
T ss_pred HHHHCCCCCEEEEE
T ss_conf 98607998236763
No 120
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=90.18 E-value=0.96 Score=25.28 Aligned_cols=137 Identities=24% Similarity=0.289 Sum_probs=78.3
Q ss_pred CCCHHHHHHHCCCCCCCHHHHHHHHHHHHCC-CCCCCEEEECCCCCCHHH---HHHHHHHHHHHHHHHHCCCHHEEECCC
Q ss_conf 1457899873033344114678999874013-443200000135220124---789886332210111002000011120
Q gi|255764472|r 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRP-DIAISSDFIVGFPGETDD---DFRATMDLVDKIGYAQAFSFKYSPRLG 372 (469)
Q Consensus 297 Sgs~~vLk~M~R~~~~e~~~~~i~~~r~~~p-~~~i~tdiIvGfPgETee---df~~Tl~~i~~~~~~~~~vf~yS~r~g 372 (469)
+-|...||+-+ + ..-+++++++++..| .+.+ +|+..+. -=...+++.+++.=- -=
T Consensus 202 ADssD~lKR~R-G---RRGLdILn~iqk~~~~~v~I-------~~~Df~di~eVD~KLvklAk~~~g~----------lv 260 (356)
T COG4956 202 ADSSDDLKRNR-G---RRGLDILNEIQKEDPIQVEI-------YEGDFEDIPEVDSKLVKLAKVTGGK----------LV 260 (356)
T ss_pred HHCCCHHHHHC-C---CCHHHHHHHHHHHCCCCEEE-------CCCCCCCHHHHHHHHHHHHHHHCCE----------EE
T ss_conf 60453555544-6---42467999998637873897-------4588664245789999999996888----------97
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCEEEEECCCCCEEEECCCCCCCCCEEE
Q ss_conf 12321436889899999999999999999999999857978999984256808689999878628897388767688899
Q gi|255764472|r 373 TPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIK 452 (469)
Q Consensus 373 T~Aa~m~~qV~~~vk~~R~~~l~~~~~~~~~~~~~~~iG~~~~Vlve~~~~~~~~~~G~t~~~~~V~~~~~~~~~G~~v~ 452 (469)
|--+++ ++|.+ .-+--.--+.+++...+-.. .-|..+.|.+-+.+++.++-+||-+..-.|+++++...+|+.++
T Consensus 261 TND~NL-nKVae-~qgV~vLNINDLAnAVkP~v---lpGe~l~v~iiK~GkE~~QGVgYLdDGTMiVVE~gr~~ig~~~~ 335 (356)
T COG4956 261 TNDFNL-NKVAE-LQGVQVLNINDLANAVKPVV---LPGEELTVQIIKDGKEPGQGVGYLDDGTMIVVEEGRKLIGKTVQ 335 (356)
T ss_pred ECCCCH-HHHHH-HCCCCEECHHHHHHHHCCCC---CCCCEEEEEEEECCCCCCCCEEEECCCEEEEEECCHHHCCCEEE
T ss_conf 246768-88776-44884630888888737731---57871689985067656886378449719999263220797159
Q ss_pred EEEEEEE
Q ss_conf 9999830
Q gi|255764472|r 453 VRITDVK 459 (469)
Q Consensus 453 V~I~~~~ 459 (469)
|.++++-
T Consensus 336 V~VtsvL 342 (356)
T COG4956 336 VEVTSVL 342 (356)
T ss_pred EEEEEHH
T ss_conf 9996311
No 121
>pfam00682 HMGL-like HMGL-like. This family contains a diverse set of enzymes. These include various aldolases and a region of pyruvate carboxylase.
Probab=89.96 E-value=1.6 Score=23.54 Aligned_cols=27 Identities=15% Similarity=0.367 Sum_probs=15.2
Q ss_pred EECCCCCCHHHHHHHHHHHHHCCCEEC
Q ss_conf 957985688789999999998798687
Q gi|255764472|r 30 KSYGCQMNVYDSLRMEDMFFSQGYERV 56 (469)
Q Consensus 30 ~TlGC~~N~~Dse~i~~~L~~~G~~~~ 56 (469)
++.|...+.-|--.|...|.+.|+...
T Consensus 5 Q~~~~~~~~e~K~~i~~~L~~~Gv~~I 31 (237)
T pfam00682 5 QALGAAFSVEEKLAIARALDEAGVDEI 31 (237)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCEE
T ss_conf 799999899999999999998498989
No 122
>TIGR01578 MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-type; InterPro: IPR006466 This clade of sequences is closely related to MiaB, a modifier of isopentenylated adenosine-37 of certain eukaryotic and bacterial tRNAs (see IPR006463 from INTERPRO). Sequence alignments suggest that this family of sequences perform the same chemical transformation as MiaB, perhaps on a different (or differently modified) tRNA base substrate. This clade represents a subfamily that spans the archaea and eukaryotes. The only archaeal miaB-like genes are in this group of sequences , , ..
Probab=89.68 E-value=0.2 Score=30.35 Aligned_cols=65 Identities=26% Similarity=0.307 Sum_probs=57.9
Q ss_pred HHHHHHCCCEEEEEEECCCCCCCEEEEECCCCCEEEECCCCCCCCCEEEEEEEEEECCEEEEEEE
Q ss_conf 99998579789999842568086899998786288973887676888999999830873899994
Q gi|255764472|r 404 SFNDACVGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 (469)
Q Consensus 404 ~~~~~~iG~~~~Vlve~~~~~~~~~~G~t~~~~~V~~~~~~~~~G~~v~V~I~~~~~~~L~G~vi 468 (469)
+-....+|....||+.+.+.+.=+|+|+.+-+..|........+|.-..|.|+++..|.-.|+++
T Consensus 370 ePyadrvGeiytvlvtevshdklhyvGhnk~~~~~~~~~~~~~iG~~~~Vlv~~asKy~g~G~~~ 434 (487)
T TIGR01578 370 EPYADRVGEIYTVLVTEVSHDKLHYVGHNKLKEEVLLEKKENLIGKREKVLVTEASKYEGKGDSL 434 (487)
T ss_pred CCCCCCCCCEEEEEEEEEECCCEEECCHHHHHHHHHCCHHHCCCCCCEEEEEEECCCCCCCCCEE
T ss_conf 63001224157787753101310111405678875100011056401048997312102424314
No 123
>COG5014 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=89.33 E-value=0.26 Score=29.49 Aligned_cols=45 Identities=22% Similarity=0.500 Sum_probs=31.5
Q ss_pred CCCCCCCCCCCCH------HHHHHHHHHHHHHHHHHHHHHHHH-CCCCEEEEEC
Q ss_conf 2332446811100------122137641005889998876310-1331058731
Q gi|255764472|r 183 QEGCDKFCTFCVV------PYTRGIEISRSLSQVVDEARKLID-NGVCEITLLG 229 (469)
Q Consensus 183 ~~GC~~~CsfC~i------p~~RG~~rSr~~~~Iv~ei~~l~~-~G~kEi~L~g 229 (469)
.-||+..|.||-. |..+|++-| ++++.+......+ .|..-+.+.|
T Consensus 48 ~VGCnl~CayCw~y~r~~~~~rag~f~~--P~eVaeRL~ei~K~~g~d~vRiSG 99 (228)
T COG5014 48 TVGCNLLCAYCWNYFRNLRPKRAGDFLS--PEEVAERLLEISKKRGCDLVRISG 99 (228)
T ss_pred CCCCCEEEHHHHHHHHCCCCCCCCCCCC--HHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 1353312387666660387221302159--799999999998855886899628
No 124
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=88.24 E-value=2.1 Score=22.69 Aligned_cols=35 Identities=14% Similarity=0.267 Sum_probs=28.0
Q ss_pred CCEEEEE---------EECCCCCCHHHHHHHHHHHHHCCCEECC
Q ss_conf 7607999---------9579856887899999999987986877
Q gi|255764472|r 23 VPQRFFV---------KSYGCQMNVYDSLRMEDMFFSQGYERVN 57 (469)
Q Consensus 23 ~~kkv~i---------~TlGC~~N~~Dse~i~~~L~~~G~~~~~ 57 (469)
|||||.| ++.|.....-|--.|...|.+.|+...+
T Consensus 1 mp~~V~I~D~tlRDG~Q~~~~~~s~e~K~~ia~~L~~~Gv~~IE 44 (287)
T PRK05692 1 LPKRVKIVEVGPRDGLQNEKRFIPTADKIALIDRLSAAGLSYIE 44 (287)
T ss_pred CCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEE
T ss_conf 99747998799986677989984999999999999984999999
No 125
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=87.93 E-value=2.2 Score=22.56 Aligned_cols=171 Identities=18% Similarity=0.224 Sum_probs=79.4
Q ss_pred EEECCCCCCCCCCCCHHHHHH--HHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCCCHHHHHHHCC
Q ss_conf 741233244681110012213--764100588999887631013310587314541134113444310002167886204
Q gi|255764472|r 180 LTIQEGCDKFCTFCVVPYTRG--IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257 (469)
Q Consensus 180 ikI~~GC~~~CsfC~ip~~RG--~~rSr~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y~g~~~~~~~~~l~~Ll~~l~~i 257 (469)
|+|..-|.. .|+-.|+.-. ..|.+.++-+-+-+....+-|++-|.|.|.|+. | +........+|.+-++++.+.
T Consensus 66 l~I~s~~~s--~~~~~pl~s~d~~~r~~~le~l~kaI~lA~~LGi~~I~l~g~dv~-~-~~~~~~~~~rf~e~l~~~~~~ 141 (284)
T PRK13210 66 VRIPSMCLS--AHRRFPFGSRDEATRERALEIMKKAIRLAQDLGIRTIQLAGYDVY-Y-EEKDEETRQRFIEGLAWAVEQ 141 (284)
T ss_pred CEEEEEECC--CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCC-C-CCCCHHHHHHHHHHHHHHHHH
T ss_conf 835664155--666899999898999999999999999999809978996887666-6-869889999999999999999
Q ss_pred CCCCCCCCCCCCCCC---C--CCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCC
Q ss_conf 443001354421000---1--00036652022111220133211145789987303334411467899987401344320
Q gi|255764472|r 258 KGLVRLRYTTSHPRD---M--SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332 (469)
Q Consensus 258 ~~~~riR~~s~~P~~---~--~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~~~r~~~p~~~i~ 332 (469)
....-+.++ +++.. + .+++.+++...+ .|++.+=.-.|+-..+ ++++.+ -+.....++..+.+.
T Consensus 142 Ae~~gV~L~-iE~~~~~f~~t~~~~~~~i~~v~--sp~l~v~~DiGn~~~~-----g~d~~~---ei~~~~~~I~~vHiK 210 (284)
T PRK13210 142 AAAAQVMLA-VEIMDTPFMNSISKWKKWDEEID--SPWFTVYPDVGNLSAW-----GNDVWS---ELKLGIDRIAAIHLK 210 (284)
T ss_pred HHHHCCEEE-EEECCCCCCCCHHHHHHHHHHCC--CCCEEEEECCCCHHHC-----CCCHHH---HHHHHHHHHEEEEEE
T ss_conf 998399899-99567655477999999999649--9836999545516541-----799999---999864452588753
Q ss_pred EEE-----ECC----CC-CCHHHHHHHHHHHHHHHHHHHCCCH
Q ss_conf 000-----013----52-2012478988633221011100200
Q gi|255764472|r 333 SDF-----IVG----FP-GETDDDFRATMDLVDKIGYAQAFSF 365 (469)
Q Consensus 333 tdi-----IvG----fP-gETeedf~~Tl~~i~~~~~~~~~vf 365 (469)
=+. --| -| |+-+-||...++.++++.++--.++
T Consensus 211 Dt~~~~~~~~G~f~~vp~G~G~vDf~~~~~~L~~~gY~G~~~i 253 (284)
T PRK13210 211 DTYAVTETSPGQFRDVPFGEGCVDFVGIFKTLKELNYRGPFLI 253 (284)
T ss_pred CCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHCCCCCEEE
T ss_conf 2435567888742005889876588999999998199632799
No 126
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=87.87 E-value=1.5 Score=23.91 Aligned_cols=31 Identities=16% Similarity=0.228 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHCCCEECCCCCCCCEEEEECC
Q ss_conf 8999999999879868776010889999278
Q gi|255764472|r 40 DSLRMEDMFFSQGYERVNSMDDADLIVLNTC 70 (469)
Q Consensus 40 Dse~i~~~L~~~G~~~~~~~~~ADviiINTC 70 (469)
..+.+...+.+.|+++++++++||++|+--=
T Consensus 18 ~~~~~~~~~~~~g~~~vdd~~~aDliI~iGG 48 (264)
T PRK03501 18 KVKPLKKIAEENGFTVVDDPKNANIIVSIGG 48 (264)
T ss_pred HHHHHHHHHHHCCCEEECCCCCCCEEEEECC
T ss_conf 9999999999879888489889899999997
No 127
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=87.87 E-value=2.2 Score=22.53 Aligned_cols=91 Identities=20% Similarity=0.252 Sum_probs=39.1
Q ss_pred HHHHHHHHHHCCCEECCC--------------CCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 999999999879868776--------------010889999278325079999999999999876766421898189996
Q gi|255764472|r 41 SLRMEDMFFSQGYERVNS--------------MDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVA 106 (469)
Q Consensus 41 se~i~~~L~~~G~~~~~~--------------~~~ADviiINTCsV~~~ae~k~~~~i~~~~~~~~~~~k~~p~~~IvVt 106 (469)
...++..|...||+.++- .++||++.+.+=.-.... -+...+..++ +. ...+.+|+++
T Consensus 16 ~~iva~~l~~~GfeVi~lG~~~~~e~~~~~a~e~~ad~i~vSsl~g~~~~--~~~~l~~~L~---e~---G~~di~vvvG 87 (128)
T cd02072 16 NKILDHAFTEAGFNVVNLGVLSPQEEFIDAAIETDADAILVSSLYGHGEI--DCKGLREKCD---EA---GLKDILLYVG 87 (128)
T ss_pred HHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCH--HHHHHHHHHH---HC---CCCCCEEEEC
T ss_conf 99999999978972984798899999999998739999998232025624--8999999999---67---9999989978
Q ss_pred CCCC--CCCHHHHHHHH--CCCCCCCCCHHHCCHHHHHH
Q ss_conf 4730--10878898741--00110011001113168887
Q gi|255764472|r 107 GCVA--QAEGEEILRRS--PIVNVVVGPQTYYRLPELLE 141 (469)
Q Consensus 107 GC~a--q~~~e~l~~~~--p~vd~vig~~~~~~i~~~i~ 141 (469)
|-.+ +...+++.+.+ -++|.++|++. .+++.+.
T Consensus 88 G~i~i~~~d~~~~~~~l~~~Gv~~vF~pGt--~~~e~i~ 124 (128)
T cd02072 88 GNLVVGKQDFEDVEKRFKEMGFDRVFAPGT--PPEEAIA 124 (128)
T ss_pred CCCCCCCCCHHHHHHHHHHCCCCEEECCCC--CHHHHHH
T ss_conf 986778310489999999669685749987--9999999
No 128
>PRK13168 rumA 23S rRNA 5-methyluridine methyltransferase; Reviewed
Probab=86.03 E-value=2.8 Score=21.83 Aligned_cols=12 Identities=33% Similarity=0.509 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q ss_conf 588999887631
Q gi|255764472|r 207 LSQVVDEARKLI 218 (469)
Q Consensus 207 ~~~Iv~ei~~l~ 218 (469)
+.+++.+++.++
T Consensus 176 i~~~l~~l~~~l 187 (440)
T PRK13168 176 LSALLPPLRALL 187 (440)
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999999
No 129
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=85.57 E-value=2.9 Score=21.68 Aligned_cols=82 Identities=20% Similarity=0.298 Sum_probs=48.0
Q ss_pred HHHHHHHHHHCCCEECCC--------------CCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 999999999879868776--------------010889999278325079999999999999876766421898189996
Q gi|255764472|r 41 SLRMEDMFFSQGYERVNS--------------MDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVA 106 (469)
Q Consensus 41 se~i~~~L~~~G~~~~~~--------------~~~ADviiINTCsV~~~ae~k~~~~i~~~~~~~~~~~k~~p~~~IvVt 106 (469)
...++..|+..||+.++- .+++|++-+. ++.+... ..+...+..+++ +..++.+|+|+
T Consensus 16 ~~iv~~~l~~~G~~V~~lG~~vp~e~~v~~a~~~~~d~I~lS-~~~~~~~-~~~~~~i~~l~~------~g~~~i~v~vG 87 (119)
T cd02067 16 KNIVARALRDAGFEVIDLGVDVPPEEIVEAAKEEDADAIGLS-GLLTTHM-TLMKEVIEELKE------AGLDDIPVLVG 87 (119)
T ss_pred HHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEE-CCCCCCH-HHHHHHHHHHHH------CCCCCCEEEEE
T ss_conf 999999999789989989999999999999997099999996-2202426-899999999997------69999859998
Q ss_pred CCCCCCCHHHHHHHHCCCCCCCCCHH
Q ss_conf 47301087889874100110011001
Q gi|255764472|r 107 GCVAQAEGEEILRRSPIVNVVVGPQT 132 (469)
Q Consensus 107 GC~aq~~~e~l~~~~p~vd~vig~~~ 132 (469)
|-.+...++ ++++. ++|.++++..
T Consensus 88 G~~~~~~~~-~~~~~-Gad~~~~~a~ 111 (119)
T cd02067 88 GAIVTRDFK-FLKEI-GVDAYFGPAT 111 (119)
T ss_pred CCCCCHHHH-HHHHC-CCCEEECCHH
T ss_conf 998974399-99986-9979977807
No 130
>PRK13731 conjugal transfer surface exclusion protein TraT; Provisional
Probab=85.20 E-value=1.3 Score=24.35 Aligned_cols=41 Identities=22% Similarity=0.330 Sum_probs=30.2
Q ss_pred EEEEEE---ECCCCCCHHHHHHHHHHHHHCCCEECCCCCCCCEEE
Q ss_conf 079999---579856887899999999987986877601088999
Q gi|255764472|r 25 QRFFVK---SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIV 66 (469)
Q Consensus 25 kkv~i~---TlGC~~N~~Dse~i~~~L~~~G~~~~~~~~~ADvii 66 (469)
|.||+. |=|+.+|-.+.. |.+.|+++||.++++|++|..++
T Consensus 51 ktVyv~vrNTS~~~~~~l~~~-i~~~L~akGY~iv~~P~~A~Y~L 94 (243)
T PRK13731 51 RTVFLQIKNTSDKDMSGLQGK-IADAVKAKGYQVVTSPDKAYYWI 94 (243)
T ss_pred CEEEEEEECCCCCCHHHHHHH-HHHHHHHCCEEEECCHHHCEEEE
T ss_conf 579999851787724567899-99999858909867865760772
No 131
>COG3269 Predicted RNA-binding protein, contains TRAM domain [General function prediction only]
Probab=84.46 E-value=3.3 Score=21.32 Aligned_cols=55 Identities=35% Similarity=0.457 Sum_probs=40.4
Q ss_pred CCCEEEEEEECCCCCCCEEEEECCCCCEEEECCCCCCCCCEEEEEEEEEECCEEEEEEE
Q ss_conf 79789999842568086899998786288973887676888999999830873899994
Q gi|255764472|r 410 VGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 (469)
Q Consensus 410 iG~~~~Vlve~~~~~~~~~~G~t~~~~~V~~~~~~~~~G~~v~V~I~~~~~~~L~G~vi 468 (469)
.|.+.+|=+++.+.+.+ =+.+-. --|+|. .+..+|+.++|+|+.+....-+|+++
T Consensus 15 eGe~y~V~I~d~g~~GD-Giarve--GfvVFV-p~a~~Gd~V~vkI~~v~~~~afaevv 69 (73)
T COG3269 15 EGETYEVEIEDVGDQGD-GIARVE--GFVVFV-PGAEVGDEVKVKITKVKPNFAFAEVV 69 (73)
T ss_pred CCCEEEEEEEEECCCCC-CEEEEE--EEEEEE-CCCCCCCEEEEEEEEEECCCEEEEEE
T ss_conf 69789999999046788-668997--789992-89988976469999950661356784
No 132
>cd01301 rDP_like renal dipeptidase (rDP), best studied in mammals and also called membrane or microsomal dipeptidase, is a membrane-bound glycoprotein hydrolyzing dipeptides and is involved in hydrolytic metabolism of penem and carbapenem beta-lactam antibiotics. Although the biological function of the enzyme is still unknown, it has been suggested to play a role in the renal glutathione metabolism.
Probab=83.28 E-value=3.6 Score=20.98 Aligned_cols=65 Identities=25% Similarity=0.329 Sum_probs=35.4
Q ss_pred CCCCCCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHC--CCCCCCEEE
Q ss_conf 354421000100036652022111220133211145789987303334411467899987401--344320000
Q gi|255764472|r 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR--PDIAISSDF 335 (469)
Q Consensus 264 R~~s~~P~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~~~r~~~--p~~~i~tdi 335 (469)
|-...||..++|+.|+++++.+-+.= + ..-+..|+. ....+.+++.+-++.+.+.. ..+.|++||
T Consensus 199 ral~~h~RNl~D~~i~aia~~gGviG-----i-~~~~~fl~~-~~~~~~~~~~~Hi~~i~~l~G~dhVgiGsDf 265 (309)
T cd01301 199 RALCDHPRNLTDAQLKAIAETGGVIG-----V-NFYPAFLSP-GADATLDDVVRHIDYIVDLIGIDHVGLGSDF 265 (309)
T ss_pred CCCCCCCCCCCHHHHHHHHHCCCEEE-----E-ECCHHHHCC-CCCCCHHHHHHHHHHHHHHHCCCEEEECCCC
T ss_conf 32148878899999999998498899-----9-514644179-9999999999999999997198828989788
No 133
>KOG2535 consensus
Probab=82.92 E-value=1.9 Score=23.07 Aligned_cols=100 Identities=13% Similarity=0.116 Sum_probs=61.9
Q ss_pred CCCCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCC-HHHHHH
Q ss_conf 0001000366520221112201332111457899873033344114678999874013443200000135220-124789
Q gi|255764472|r 270 PRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGE-TDDDFR 348 (469)
Q Consensus 270 P~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~~~r~~~p~~~i~tdiIvGfPgE-Teedf~ 348 (469)
|+.-...-++-|-..+ |--|.+++||.-..|-+.-||+||+..+-+.+...+.+ |..+-+-.|-..|.- -|.|.+
T Consensus 231 PDyC~~~Hl~~ML~YG--CTRlEiGVQS~YEDVARDTNRGHTV~aVce~F~laKDa--G~KvV~HMMPdLPNVg~eRDie 306 (554)
T KOG2535 231 PDYCLKRHLSDMLTYG--CTRLEIGVQSVYEDVARDTNRGHTVKAVCESFHLAKDA--GFKVVAHMMPDLPNVGMERDIE 306 (554)
T ss_pred CCCCHHHHHHHHHHCC--CCEEEECCHHHHHHHHHCCCCCCCHHHHHHHHHHHHCC--CCEEEHHHCCCCCCCCHHHHHH
T ss_conf 7422126699998608--71378510035777652166884689998776630036--8245023278999985041299
Q ss_pred HHHHHHHHH--HHHHCCCHHEEECCCH
Q ss_conf 886332210--1110020000111201
Q gi|255764472|r 349 ATMDLVDKI--GYAQAFSFKYSPRLGT 373 (469)
Q Consensus 349 ~Tl~~i~~~--~~~~~~vf~yS~r~gT 373 (469)
+-.+|.+.- +.|-+-++|----.||
T Consensus 307 qF~E~FenP~FR~DGLKiYPTLVIrGT 333 (554)
T KOG2535 307 QFKEYFENPAFRPDGLKIYPTLVIRGT 333 (554)
T ss_pred HHHHHHCCCCCCCCCCEECCEEEEECC
T ss_conf 999983196768787412226999344
No 134
>KOG3799 consensus
Probab=82.45 E-value=0.35 Score=28.53 Aligned_cols=20 Identities=25% Similarity=0.926 Sum_probs=16.1
Q ss_pred EEECCCCCCCCCCCCHHH-HH
Q ss_conf 741233244681110012-21
Q gi|255764472|r 180 LTIQEGCDKFCTFCVVPY-TR 199 (469)
Q Consensus 180 ikI~~GC~~~CsfC~ip~-~R 199 (469)
-|-++||-+.|+||.+.+ +|
T Consensus 74 TKFADG~GH~C~YCq~r~CAR 94 (169)
T KOG3799 74 TKFADGCGHNCSYCQTRFCAR 94 (169)
T ss_pred CCCCCCCCCCCCHHHHHHHHH
T ss_conf 310346676413420168775
No 135
>TIGR01210 TIGR01210 conserved hypothetical protein TIGR01210; InterPro: IPR005909 This family of exclusively archaeal proteins has no characterised close homologs. An apparent similarity between the central region of this family and the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN has been observed..
Probab=78.87 E-value=5 Score=19.92 Aligned_cols=190 Identities=13% Similarity=0.118 Sum_probs=97.8
Q ss_pred ECCCCCCC-----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC----CC--CEEEEECCCCCEEEECCCCCCCCCCCHH
Q ss_conf 12332446-----8111001221376410058899988763101----33--1058731454113411344431000216
Q gi|255764472|r 182 IQEGCDKF-----CTFCVVPYTRGIEISRSLSQVVDEARKLIDN----GV--CEITLLGQNVNAWRGKGLDGEKCTFSDL 250 (469)
Q Consensus 182 I~~GC~~~-----CsfC~ip~~RG~~rSr~~~~Iv~ei~~l~~~----G~--kEi~L~g~d~~~Y~g~~~~~~~~~l~~L 250 (469)
-.+||.+. |..|..+.---+.-+...++++.++...... +- +...+---..++| -++.......-..+
T Consensus 22 ~~~gc~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~d~~~~p~~~~~~~ 100 (329)
T TIGR01210 22 RTRGCYWYRIGGGCYLCGYLADAPPGGKVTEENLLGQFDYALEKLKGEGGDLKDFVLKIFTSGSF-LDDREVPPGTRGYL 100 (329)
T ss_pred ECCCCCHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCC-CCHHHCCHHHHHHH
T ss_conf 14552001103540000122113454421488999999999876420133344422002204442-35010324788999
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCC-CCCCCEEEEEECCCHHHHH-HHCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 78862044430013544210001000366520221-1122013321114578998-730333441146789998740134
Q gi|255764472|r 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILK-SMNRRHTAYEYRQIIDRIRSVRPD 328 (469)
Q Consensus 251 l~~l~~i~~~~riR~~s~~P~~~~~~li~~~~~~~-~i~~~lhlpiQSgs~~vLk-~M~R~~~~e~~~~~i~~~r~~~p~ 328 (469)
.+.+.+...++++-+. ..|..++++-+.-+.... .+---+-+++++.++++.. .+|++.+.+++......++++ +
T Consensus 101 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~ 177 (329)
T TIGR01210 101 FEKLAERDNLKKLVVE-SRPEFIDEEKLEELRKVGEGLPLEVGVGLETANDRVRELCINKGFTFEDFVDAAELARNY--G 177 (329)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHCCHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC--C
T ss_conf 9987654346777653-001110334566787752464200010210002467776542145167899999988752--7
Q ss_pred CCCCEEEECCCCCCHHH----HHHHHHHHHHHHH-HHHCCCHHEEECCCHHH
Q ss_conf 43200000135220124----7898863322101-11002000011120123
Q gi|255764472|r 329 IAISSDFIVGFPGETDD----DFRATMDLVDKIG-YAQAFSFKYSPRLGTPG 375 (469)
Q Consensus 329 ~~i~tdiIvGfPgETee----df~~Tl~~i~~~~-~~~~~vf~yS~r~gT~A 375 (469)
+.+.+-++.-=|--++. |...++..+..+. -+.+.+.+-....||..
T Consensus 178 ~~~~~~ll~~p~~~~~~~~~~~~~~~~~~~~~~~gc~~~~~~~~~~~~~~~~ 229 (329)
T TIGR01210 178 AGVKAYLLLKPPFLSEKEAIADALSSIRKCKPYTGCDTVSLNPTNVQKGTLV 229 (329)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHH
T ss_conf 6301211112410020467889998888653203542122020001034678
No 136
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=78.19 E-value=4.9 Score=20.00 Aligned_cols=26 Identities=15% Similarity=0.500 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 64100588999887631013310587
Q gi|255764472|r 202 EISRSLSQVVDEARKLIDNGVCEITL 227 (469)
Q Consensus 202 ~rSr~~~~Iv~ei~~l~~~G~kEi~L 227 (469)
.+.++++.+++|++....-|+.-+++
T Consensus 78 ~~~kS~~~l~~el~~~~~lG~~~vV~ 103 (273)
T smart00518 78 KVEKSIERLIDEIKRCEELGIKALVF 103 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 99999999999999999809985873
No 137
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=76.77 E-value=5.7 Score=19.50 Aligned_cols=143 Identities=22% Similarity=0.256 Sum_probs=69.6
Q ss_pred ECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCCCHHHHHHHCCCCCC
Q ss_conf 12332446811100122137641005889998876310133105873145411341134443100021678862044430
Q gi|255764472|r 182 IQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV 261 (469)
Q Consensus 182 I~~GC~~~CsfC~ip~~RG~~rSr~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y~g~~~~~~~~~l~~Ll~~l~~i~~~~ 261 (469)
..+||... +|+=-|.-=.++|++..+|- + + +|++.- ....+.+.+.. ++.|-..
T Consensus 135 ~g~g~~~~---------~~~GLs~~Gk~lV~~~N~Lg---I---i---iDlSH~-------s~kt~~Dvl~~-s~~Pvia 188 (313)
T COG2355 135 FGDGCYER---------TGGGLTPFGKELVREMNELG---I---I---IDLSHL-------SDKTFWDVLDL-SKAPVVA 188 (313)
T ss_pred CCCCCCCC---------CCCCCCHHHHHHHHHHHHCC---C---E---EEECCC-------CCCCHHHHHHC-CCCCEEE
T ss_conf 56756778---------89987878999999998659---7---7---872235-------87229999854-5886687
Q ss_pred ---CCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHC--CCCCCCHHHHHHHHHHHH--CCCCCCCEE
Q ss_conf ---0135442100010003665202211122013321114578998730--333441146789998740--134432000
Q gi|255764472|r 262 ---RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN--RRHTAYEYRQIIDRIRSV--RPDIAISSD 334 (469)
Q Consensus 262 ---riR~~s~~P~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~--R~~~~e~~~~~i~~~r~~--~p~~~i~td 334 (469)
-.|-..-||..++|+-++++++.+-+. ++ .+-+..|+. + ...+.+++.+-|+.+-+. ...+.|+||
T Consensus 189 SHSN~~al~~h~RNl~D~qlkaI~~~gGvI-----gv-~~~~~fl~~-~~~~~atldd~v~hI~h~v~~~G~dhVglGsD 261 (313)
T COG2355 189 SHSNARALVDHPRNLSDEQLKAIAETGGVI-----GV-NFIPAFLRP-GGAARATLDDLVRHIDHFVELVGIDHVGLGSD 261 (313)
T ss_pred ECCCCHHCCCCCCCCCHHHHHHHHHCCCEE-----EE-EEEHHHCCC-CCCCCCCHHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 437724105888898899999999649979-----99-864522368-87789998999999999998538421686446
Q ss_pred EECCCCC-CHHHHHHHHHHHHHHH
Q ss_conf 0013522-0124789886332210
Q gi|255764472|r 335 FIVGFPG-ETDDDFRATMDLVDKI 357 (469)
Q Consensus 335 iIvGfPg-ETeedf~~Tl~~i~~~ 357 (469)
|=-+... +.-||....-+|++++
T Consensus 262 f~g~~~~p~gled~~~l~~l~~~L 285 (313)
T COG2355 262 FDGGTGPPDGLEDVGKLPNLTAAL 285 (313)
T ss_pred CCCCCCCCHHHCCHHHHHHHHHHH
T ss_conf 567888861012756779999999
No 138
>PRK00915 2-isopropylmalate synthase; Validated
Probab=76.44 E-value=5.8 Score=19.44 Aligned_cols=28 Identities=18% Similarity=0.343 Sum_probs=24.3
Q ss_pred EECCCCCCHHHHHHHHHHHHHCCCEECC
Q ss_conf 9579856887899999999987986877
Q gi|255764472|r 30 KSYGCQMNVYDSLRMEDMFFSQGYERVN 57 (469)
Q Consensus 30 ~TlGC~~N~~Dse~i~~~L~~~G~~~~~ 57 (469)
++.|.+++.-|--.|...|.+.|+...+
T Consensus 17 Q~~gv~fs~e~K~~Ia~~L~~~GV~~IE 44 (511)
T PRK00915 17 QSPGASLTVEEKLQIAKQLERLGVDVIE 44 (511)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCEEE
T ss_conf 7999998999999999999976989899
No 139
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=74.82 E-value=4.5 Score=20.28 Aligned_cols=69 Identities=16% Similarity=0.392 Sum_probs=42.5
Q ss_pred ECCCCCCHHHHHHHHHHHHHCCCEE-----CCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 5798568878999999999879868-----77601088999927832507999999999999987676642189818999
Q gi|255764472|r 31 SYGCQMNVYDSLRMEDMFFSQGYER-----VNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVV 105 (469)
Q Consensus 31 TlGC~~N~~Dse~i~~~L~~~G~~~-----~~~~~~ADviiINTCsV~~~ae~k~~~~i~~~~~~~~~~~k~~p~~~IvV 105 (469)
.-||.... ..+..++|.. +.+..|.|+|. -.+++..+.|..+.+ +-+|++..|+
T Consensus 30 p~GC~~~~-------~~~~~rh~~e~~~~~sT~l~E~~~Vf--------GG~~~L~~ai~~~~~------~~~P~~I~V~ 88 (428)
T cd01965 30 SQGCSSFA-------RVLFTRHFKEPIPIASTSMTEDAAVF--------GGEDNLIEALKNLLS------RYKPDVIGVL 88 (428)
T ss_pred CHHHHHHH-------HHHHHCCCCCCCCCCCCCCCCCCEEE--------CCHHHHHHHHHHHHH------HCCCCEEEEE
T ss_conf 57578899-------99985245789787655688661550--------638999999999998------4499889997
Q ss_pred ECCCCCCCHHHHHHH
Q ss_conf 647301087889874
Q gi|255764472|r 106 AGCVAQAEGEEILRR 120 (469)
Q Consensus 106 tGC~aq~~~e~l~~~ 120 (469)
++|.++.-++++...
T Consensus 89 ttC~se~IGDDi~~v 103 (428)
T cd01965 89 TTCLTETIGDDVAGF 103 (428)
T ss_pred CCCHHHHHCCCHHHH
T ss_conf 676688636758999
No 140
>PRK12328 nusA transcription elongation factor NusA; Provisional
Probab=73.88 E-value=6.7 Score=18.99 Aligned_cols=11 Identities=27% Similarity=0.280 Sum_probs=4.9
Q ss_pred CCCCCCCEEEE
Q ss_conf 56777725787
Q gi|255764472|r 170 YNRKRGVTAFL 180 (469)
Q Consensus 170 ~~~~~~~~a~i 180 (469)
+....+.++||
T Consensus 177 y~~Gdrik~~i 187 (375)
T PRK12328 177 FKVGDVVKAVL 187 (375)
T ss_pred CCCCCEEEEEE
T ss_conf 89998699999
No 141
>pfam05818 TraT Enterobacterial TraT complement resistance protein. The traT gene is one of the F factor transfer genes and encodes an outer membrane protein which is involved in interactions between an Escherichia coli and its surroundings.
Probab=72.98 E-value=3.4 Score=21.16 Aligned_cols=40 Identities=15% Similarity=0.301 Sum_probs=30.8
Q ss_pred EEEEEE---ECCCCCCHHHHHHHHHHHHHCCCEECCCCCCCCEEE
Q ss_conf 079999---579856887899999999987986877601088999
Q gi|255764472|r 25 QRFFVK---SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIV 66 (469)
Q Consensus 25 kkv~i~---TlGC~~N~~Dse~i~~~L~~~G~~~~~~~~~ADvii 66 (469)
|.||+. |=|+.+| =...|.+.|+++||.++++|++|..++
T Consensus 22 ktVyv~vrNTSd~~i~--l~~~i~~~L~akGY~iv~~P~~A~Y~l 64 (215)
T pfam05818 22 RTVYLSIRNTSDKNVN--LEQKLISALQAKGYKVVDDPDKAHYWL 64 (215)
T ss_pred CEEEEEEECCCCCCCC--CHHHHHHHHHHCCCEEECCHHHCEEEE
T ss_conf 7799998538877667--338999999848938867965770773
No 142
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=71.01 E-value=3.5 Score=21.05 Aligned_cols=75 Identities=12% Similarity=0.185 Sum_probs=45.1
Q ss_pred ECCCCCCHHHHHHHHHHHHHC-CC---EECCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 579856887899999999987-98---68776010889999278325079999999999999876766421898189996
Q gi|255764472|r 31 SYGCQMNVYDSLRMEDMFFSQ-GY---ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVA 106 (469)
Q Consensus 31 TlGC~~N~~Dse~i~~~L~~~-G~---~~~~~~~~ADviiINTCsV~~~ae~k~~~~i~~~~~~~~~~~k~~p~~~IvVt 106 (469)
+-||......+-......... .+ ..+.+..|.|+|. -.+++..+.|..+.+ +-+|.+..|++
T Consensus 32 p~GCa~~~~~~~~~~~~~~~~~~~~~~~~sT~l~E~~~Vf--------GG~~~L~~ai~~~~~------~y~P~~I~V~t 97 (426)
T cd01972 32 PIGCAAGQSFFNRLYRCGEMRRGLNEPVLSTNLTEKDVVF--------GGEKKLEDTIKEAYS------RYKPKAIFVAT 97 (426)
T ss_pred CCCCCCCCCCCEEEECCCCCCCCCCCCEEECCCCCCCEEC--------CHHHHHHHHHHHHHH------HHCCCEEEEEC
T ss_conf 6001478111100432345786667876771377540020--------769999999999999------60997799973
Q ss_pred CCCCCCCHHHHHH
Q ss_conf 4730108788987
Q gi|255764472|r 107 GCVAQAEGEEILR 119 (469)
Q Consensus 107 GC~aq~~~e~l~~ 119 (469)
.|+++.-++++..
T Consensus 98 TC~se~IGDDi~~ 110 (426)
T cd01972 98 SCATGIIGDDVES 110 (426)
T ss_pred CCHHHHHCCCHHH
T ss_conf 6678772773899
No 143
>COG0685 MetF 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=70.85 E-value=7.6 Score=18.59 Aligned_cols=122 Identities=15% Similarity=0.269 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCCC-CCCCCHHHHHHHCCC-CCCCCCCCCCCCCC
Q ss_conf 0122137641005889998876310133105873145411341134443-100021678862044-43001354421000
Q gi|255764472|r 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGE-KCTFSDLLYSLSEIK-GLVRLRYTTSHPRD 272 (469)
Q Consensus 195 ip~~RG~~rSr~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y~g~~~~~~-~~~l~~Ll~~l~~i~-~~~riR~~s~~P~~ 272 (469)
+|+... |-++...|.+.++.+.+.|+++|+++.=|-- . | +.... ...-.+|++.+.... +.+-+- ..+||..
T Consensus 81 i~Hltc--~d~n~~~i~~~l~~~~~~Gi~~ilaLrGDpp-~-g-~~~~~~~~~s~dLv~lik~~~~~~f~i~-~A~~Pe~ 154 (291)
T COG0685 81 IPHLTC--RDRNRIEIISILKGAAALGIRNILALRGDPP-A-G-DKPGGKDLYSVDLVELIKKMRGGIFDIG-VAAYPEG 154 (291)
T ss_pred EEEEEC--CCCCHHHHHHHHHHHHHCCCCEEEEECCCCC-C-C-CCCCCCCCCHHHHHHHHHHHCCCCEEEE-EEECCCC
T ss_conf 347514--6889899999999999818855999458987-7-7-8878654689999999998568973589-9867887
Q ss_pred CCC------HHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCC
Q ss_conf 100------0366520221112201332111457899873033344114678999874013443200000135
Q gi|255764472|r 273 MSD------CLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGF 339 (469)
Q Consensus 273 ~~~------~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~~~r~~~p~~~i~tdiIvGf 339 (469)
-++ ++..+.+ |+ ++|-|.++..+ -|+.+.|.+..++++++ ++ ..-|+.|.
T Consensus 155 h~~s~~~~~d~~~lkr---Kv--------~aGAd~~iTQ~--~fd~e~~~~~~~~~~~~--g~--~~pI~~Gi 210 (291)
T COG0685 155 HPESKDVKEDIKRLKR---KV--------DAGADFFITQF--FFDVEAFERFAERVRAA--GI--DIPIIPGI 210 (291)
T ss_pred CCCCHHHHHHHHHHHH---HH--------HCCCCEEEEEE--CCCHHHHHHHHHHHHHC--CC--CCCEEEEE
T ss_conf 8441005789999999---98--------65886576420--16899999999999863--89--98556213
No 144
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=70.07 E-value=5.7 Score=19.52 Aligned_cols=68 Identities=15% Similarity=0.361 Sum_probs=43.7
Q ss_pred ECCCCCCHHHHHHHHHHHHHCCCEE-----CCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 5798568878999999999879868-----77601088999927832507999999999999987676642189818999
Q gi|255764472|r 31 SYGCQMNVYDSLRMEDMFFSQGYER-----VNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVV 105 (469)
Q Consensus 31 TlGC~~N~~Dse~i~~~L~~~G~~~-----~~~~~~ADviiINTCsV~~~ae~k~~~~i~~~~~~~~~~~k~~p~~~IvV 105 (469)
+=||. ..+ ..+..++|.. +++..|.|+|. -.+++.++.|..+.+ +-+|.+..|+
T Consensus 30 sqGCa------s~~-~~~~~rhf~ep~~~~sT~l~E~~~Vf--------GG~~~L~~~I~~~~~------~y~P~~I~V~ 88 (417)
T cd01966 30 AQGCT------SFA-KVLLVRHFKEPIPLQTTAMDEVSTIL--------GGGENLEEALDTLAE------RAKPKVIGLL 88 (417)
T ss_pred CHHHH------HHH-HHHHHCCCCCCCCCCCCCCCCCCEEE--------CCHHHHHHHHHHHHH------HCCCCEEEEE
T ss_conf 07788------679-99862657898687767888786566--------738999999999998------5298779996
Q ss_pred ECCCCCCCHHHHHH
Q ss_conf 64730108788987
Q gi|255764472|r 106 AGCVAQAEGEEILR 119 (469)
Q Consensus 106 tGC~aq~~~e~l~~ 119 (469)
|+|+++.-++++..
T Consensus 89 tTC~se~IGDDi~~ 102 (417)
T cd01966 89 STGLTETRGEDIAG 102 (417)
T ss_pred CCCHHHHCCCCHHH
T ss_conf 55314330777899
No 145
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=69.62 E-value=4.5 Score=20.31 Aligned_cols=71 Identities=23% Similarity=0.352 Sum_probs=43.3
Q ss_pred ECCCCCCHHHHHHHHHHHHHCCCEE-----CCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 5798568878999999999879868-----77601088999927832507999999999999987676642189818999
Q gi|255764472|r 31 SYGCQMNVYDSLRMEDMFFSQGYER-----VNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVV 105 (469)
Q Consensus 31 TlGC~~N~~Dse~i~~~L~~~G~~~-----~~~~~~ADviiINTCsV~~~ae~k~~~~i~~~~~~~~~~~k~~p~~~IvV 105 (469)
+-||....+.. +..+ ..++.. +.+..|.|+|. -.+++..+.|..+.+ +-+|++..|+
T Consensus 32 ~qGC~~~~~~~---r~~~-~~~~~~~~~~~sT~l~E~~~Vf--------GG~~~L~~~I~~~~~------~~~P~~I~v~ 93 (410)
T cd01968 32 PIGCAGYSWDI---RGSR-SSGSELYRMGFSTDLSEKDVIF--------GGEKKLYKAILEIIE------RYHPKAVFVY 93 (410)
T ss_pred HHHHHCCHHHH---CCCC-CCCCCCCCCCCCCCCCCCCEEE--------CCHHHHHHHHHHHHH------HCCCCEEEEE
T ss_conf 36552762553---3654-5676666655877898685565--------739999999999998------5499889997
Q ss_pred ECCCCCCCHHHHHH
Q ss_conf 64730108788987
Q gi|255764472|r 106 AGCVAQAEGEEILR 119 (469)
Q Consensus 106 tGC~aq~~~e~l~~ 119 (469)
|+|+++.-++++..
T Consensus 94 tTC~~e~IGDDi~~ 107 (410)
T cd01968 94 STCVVALIGDDIDA 107 (410)
T ss_pred CCCHHHHHCCCHHH
T ss_conf 56708873563999
No 146
>KOG0916 consensus
Probab=69.24 E-value=4.8 Score=20.05 Aligned_cols=90 Identities=21% Similarity=0.264 Sum_probs=52.7
Q ss_pred EECCCCCCCCCCCCHHHHHHHHH-------------HHHHHHHHHHHHHHH-------HCCCCEEEEECCCCCEEEECCC
Q ss_conf 41233244681110012213764-------------100588999887631-------0133105873145411341134
Q gi|255764472|r 181 TIQEGCDKFCTFCVVPYTRGIEI-------------SRSLSQVVDEARKLI-------DNGVCEITLLGQNVNAWRGKGL 240 (469)
Q Consensus 181 kI~~GC~~~CsfC~ip~~RG~~r-------------Sr~~~~Iv~ei~~l~-------~~G~kEi~L~g~d~~~Y~g~~~ 240 (469)
++.+|=+-.=.- +++++||... -..+-++++|.+.+- --|+||-++|| ++++- +.-.
T Consensus 1047 ilGeGKpeNQNh-aiiFtRGE~iQtIDmNQDnYlEE~lKmRnlL~EF~~~~~g~r~ptIlG~RE~IFt~-svssL-a~fm 1123 (1679)
T KOG0916 1047 ILGEGKPENQNH-AIIFTRGEAIQTIDMNQDNYLEEALKMRNLLQEFEELHLGIRPPTILGAREHIFTG-SVSSL-AWFM 1123 (1679)
T ss_pred CCCCCCCCCCCC-EEEEECCHHHHEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHEECC-CCHHH-HHHH
T ss_conf 578998756672-34565442551023562278999999999999998644798897364301302257-70278-9987
Q ss_pred CCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 44310002167886204443001354421000100
Q gi|255764472|r 241 DGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSD 275 (469)
Q Consensus 241 ~~~~~~l~~Ll~~l~~i~~~~riR~~s~~P~~~~~ 275 (469)
-+...+|..|..++..-++ ++|+.|-||+.++-
T Consensus 1124 s~qEqSFvTlgqR~LA~p~--~vr~HYGHPD~~dr 1156 (1679)
T KOG0916 1124 SGQEQSFVTLGQRTLANPG--GVRLHYGHPDVFDR 1156 (1679)
T ss_pred CCCCCCHHHHHHHHHCCCC--CEEEECCCCCHHHH
T ss_conf 1675212217778750435--41223589727654
No 147
>TIGR01358 DAHP_synth_II 3-deoxy-7-phosphoheptulonate synthase; InterPro: IPR002480 Members of the 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthetase family (2.5.1.54 from EC) catalyse the first step in aromatic amino acid biosynthesis from chorismate. Class I (see IPR006218 from INTERPRO) includes bacterial and yeast enzymes; class II includes higher plants and various microorganisms . The first step in the common pathway leading to the biosynthesis of aromatic compounds is the stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP). This reaction is catalyzed by DAHP synthase, a metal-activated enzyme, which in microorganisms is the target for negative-feedback regulation by pathway intermediates or by end products.; GO: 0003849 3-deoxy-7-phosphoheptulonate synthase activity, 0009073 aromatic amino acid family biosynthetic process.
Probab=68.74 E-value=4.2 Score=20.49 Aligned_cols=44 Identities=16% Similarity=0.295 Sum_probs=19.5
Q ss_pred CCCHHHHHHHHHHHHH-HHHHHHCCCHHEEECCCHHHHHCCCCCCHHHHH
Q ss_conf 2201247898863322-101110020000111201232143688989999
Q gi|255764472|r 340 PGETDDDFRATMDLVD-KIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKA 388 (469)
Q Consensus 340 PgETeedf~~Tl~~i~-~~~~~~~~vf~yS~r~gT~Aa~m~~qV~~~vk~ 388 (469)
|.-+-++..+.+|.+. +-+|-++- +--|=| |.++-+..|+=+++
T Consensus 294 P~m~pd~ll~lie~LdP~~~PGRLt---li~RmG--a~~~adkLP~L~~a 338 (450)
T TIGR01358 294 PSMTPDELLRLIERLDPENEPGRLT---LISRMG--ADKIADKLPPLLEA 338 (450)
T ss_pred CCCCHHHHHHHHHHCCCCCCCCCEE---EEEECC--CCHHHHHCHHHHHH
T ss_conf 8666889998865407799896368---888337--50123405378999
No 148
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=68.24 E-value=6.9 Score=18.91 Aligned_cols=69 Identities=17% Similarity=0.290 Sum_probs=44.3
Q ss_pred ECCCCCCHHHHHHHHHHHHHCCCE-----ECCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 579856887899999999987986-----877601088999927832507999999999999987676642189818999
Q gi|255764472|r 31 SYGCQMNVYDSLRMEDMFFSQGYE-----RVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVV 105 (469)
Q Consensus 31 TlGC~~N~~Dse~i~~~L~~~G~~-----~~~~~~~ADviiINTCsV~~~ae~k~~~~i~~~~~~~~~~~k~~p~~~IvV 105 (469)
+-||. ...+..+ ..+|. .+.+..+.|++. -.+++..+.|..+.+ +-+|++..|+
T Consensus 34 ~~GC~------~~~~~~~-~rhf~~~~~~~tT~l~E~~vVf--------GG~~~L~~aI~~~~~------~~~p~~I~V~ 92 (435)
T cd01974 34 SQGCV------AYFRSHL-SRHFKEPVSAVSSSMTEDAAVF--------GGQNNLIDGLKNAYA------VYKPDMIAVS 92 (435)
T ss_pred CHHHH------HHHHHHH-HCCCCCCCCCCCCCCCCCCEEE--------CCHHHHHHHHHHHHH------HCCCCEEEEE
T ss_conf 37689------9998876-1357898675124666642464--------608999999999998------5199889997
Q ss_pred ECCCCCCCHHHHHHH
Q ss_conf 647301087889874
Q gi|255764472|r 106 AGCVAQAEGEEILRR 120 (469)
Q Consensus 106 tGC~aq~~~e~l~~~ 120 (469)
++|.++.-++++...
T Consensus 93 tTC~~e~iGDDi~~v 107 (435)
T cd01974 93 TTCMAEVIGDDLNAF 107 (435)
T ss_pred CCCHHHHHCCCHHHH
T ss_conf 663797735628999
No 149
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=68.22 E-value=8.8 Score=18.11 Aligned_cols=147 Identities=17% Similarity=0.155 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCC---C--CC
Q ss_conf 764100588999887631013310587314541134113444310002167886204443001354421000---1--00
Q gi|255764472|r 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRD---M--SD 275 (469)
Q Consensus 201 ~~rSr~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y~g~~~~~~~~~l~~Ll~~l~~i~~~~riR~~s~~P~~---~--~~ 275 (469)
..|.+.++-+-+-|....+-|++-|.+.|-|+ |.+..-.-....|.+-|+.+.+.....-+.++ ++|.+ + .+
T Consensus 92 ~~R~~~~e~~~kaI~lA~~LGi~~I~lag~dv--~~~~~~~e~~~~f~e~L~~~~~~A~~~gV~L~-iE~~~~~f~~t~~ 168 (283)
T PRK13209 92 AVRAQGLEIMRKAIQLAQDLGIRVIQLAGYDV--YYEEANNETRRRFIDGLKESVEMASRYSVTLA-FEIMDTPFMGSIS 168 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEECCCCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEE-EEECCHHHHCCHH
T ss_conf 99999999999999999980999899688766--78878599999999999999999998599899-9425534321599
Q ss_pred HHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCC-----CCHHHHHHHH
Q ss_conf 03665202211122013321114578998730333441146789998740134432000001352-----2012478988
Q gi|255764472|r 276 CLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFP-----GETDDDFRAT 350 (469)
Q Consensus 276 ~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~~~r~~~p~~~i~tdiIvGfP-----gETeedf~~T 350 (469)
++++.+...+ .|+|.+=...|+-... . .+..+.+...+.++-.+.+. |-.-|-| |+-.-||.+.
T Consensus 169 ~~~~~i~~v~--sP~l~v~~D~gn~~~~-----~---~d~~~~i~~~~~~I~~vH~k-D~~~g~~~~vp~G~G~vdf~~v 237 (283)
T PRK13209 169 KALGYAHYLN--SPWFQLYPDIGNLSAW-----D---NDVQMELQAGIGHIVAFHVK-DTKPGVFKNVPFGEGVVDFERA 237 (283)
T ss_pred HHHHHHHHCC--CCCEEEEECHHHHHHC-----C---CCHHHHHHHHHHHEEEEEEC-CCCCCCCCCCCCCCCCCCHHHH
T ss_conf 9999999669--9728999445779875-----6---99999999724456898531-4779976757898885088999
Q ss_pred HHHHHHHHHHH
Q ss_conf 63322101110
Q gi|255764472|r 351 MDLVDKIGYAQ 361 (469)
Q Consensus 351 l~~i~~~~~~~ 361 (469)
++-++++.++-
T Consensus 238 f~aLk~~gY~G 248 (283)
T PRK13209 238 FKTLKQSGYCG 248 (283)
T ss_pred HHHHHHHCCCC
T ss_conf 99999979976
No 150
>PRK10494 hypothetical protein; Provisional
Probab=68.21 E-value=8.8 Score=18.11 Aligned_cols=67 Identities=18% Similarity=0.099 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHCCCEECCCCCCCCEEEEECCCCCHHHH--------HHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC
Q ss_conf 89999999998798687760108899992783250799--------9999999999987676642189818999647301
Q gi|255764472|r 40 DSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA--------EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQ 111 (469)
Q Consensus 40 Dse~i~~~L~~~G~~~~~~~~~ADviiINTCsV~~~ae--------~k~~~~i~~~~~~~~~~~k~~p~~~IvVtGC~aq 111 (469)
=++.+...|+. -|.....++.||.|||=.++.+...+ ..+..++...-.+ .|++|+.+++++|-.+.
T Consensus 58 v~~~Ll~~LE~-~y~~~~~~~~~d~IVVLGGg~~~~~~~~~~~~~~~~a~~Rl~~g~~L----~r~~~~~~li~SGG~~~ 132 (259)
T PRK10494 58 VADRLLRPIES-TYPTWNGSQKVDYIVVLGGGYTWNPQWAPSSNLINNSLPRLNEGIRL----WRANPGAKLIFTGGVAK 132 (259)
T ss_pred HHHHHHHHHHH-HCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHH----HHHCCCCEEEEECCCCC
T ss_conf 99999999986-45687777777879992685115887676444446489999999999----98389983999688788
No 151
>COG3925 N-terminal domain of the phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=67.90 E-value=5.8 Score=19.47 Aligned_cols=46 Identities=15% Similarity=0.248 Sum_probs=35.1
Q ss_pred ECCCCCCHHHHHHHHHHHHHCCCEECCCCCCCCEEEEECCCCCHHH
Q ss_conf 5798568878999999999879868776010889999278325079
Q gi|255764472|r 31 SYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKA 76 (469)
Q Consensus 31 TlGC~~N~~Dse~i~~~L~~~G~~~~~~~~~ADviiINTCsV~~~a 76 (469)
.+|-..-.--.+.+...-.+.|.+++++++|||++|+---+.-+..
T Consensus 10 nlGqarayl~~~vl~AAA~ka~l~ii~tp~dAeLviV~G~sipnd~ 55 (103)
T COG3925 10 NLGQARAYLAHTVLGAAAHKAGLEIIDTPNDAELVIVFGSSIPNDS 55 (103)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCEEECCCCCCCEEEEECCCCCCCC
T ss_conf 4106899999999999998779856678775408999645468971
No 152
>COG3260 Ni,Fe-hydrogenase III small subunit [Energy production and conversion]
Probab=67.77 E-value=4.5 Score=20.32 Aligned_cols=39 Identities=26% Similarity=0.325 Sum_probs=25.5
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEECCCCCCCCEEEEECCCCCHHHHHH
Q ss_conf 98568878999999999879868776010889999278325079999
Q gi|255764472|r 33 GCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEK 79 (469)
Q Consensus 33 GC~~N~~Dse~i~~~L~~~G~~~~~~~~~ADviiINTCsV~~~ae~k 79 (469)
.|---+||.| +.|...+.+|-.||+.++ |=.||....+.
T Consensus 28 a~~sP~YDaE-------rfgI~~v~sPRhADiLlV-TG~vT~~~~e~ 66 (148)
T COG3260 28 AALSPRYDAE-------RFGIKVVNSPRHADILLV-TGAVTRQMREP 66 (148)
T ss_pred ECCCCCCCHH-------HHEEEEECCCCCCCEEEE-ECCCCHHHHHH
T ss_conf 4258534367-------811688479864338999-52165888999
No 153
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=66.22 E-value=3.3 Score=21.25 Aligned_cols=43 Identities=21% Similarity=0.391 Sum_probs=32.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHH
Q ss_conf 2507999999999999987676642189818999647301087889874
Q gi|255764472|r 72 IREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRR 120 (469)
Q Consensus 72 V~~~ae~k~~~~i~~~~~~~~~~~k~~p~~~IvVtGC~aq~~~e~l~~~ 120 (469)
+.--++++..+.|..+.+ +-+|+...|+++|.++.-++++...
T Consensus 66 ~VfGg~~~L~~ai~~~~~------~~~p~~I~V~tTc~se~IGdDi~~v 108 (427)
T cd01971 66 IVFGGEDRLRELIKSTLS------IIDADLFVVLTGCIAEIIGDDVGAV 108 (427)
T ss_pred HHCCHHHHHHHHHHHHHH------HCCCCEEEEECCCHHHHHCCCHHHH
T ss_conf 424759999999999998------4798669997677588626768999
No 154
>pfam08013 Tagatose_6_P_K Tagatose 6 phosphate kinase. Proteins in this family are tagatose 6 phosphate kinases.
Probab=65.28 E-value=9.9 Score=17.71 Aligned_cols=43 Identities=9% Similarity=0.070 Sum_probs=18.7
Q ss_pred CCCEEEEECCC-------CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 08899992783-------2507999999999999987676642189818999647
Q gi|255764472|r 61 DADLIVLNTCH-------IREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGC 108 (469)
Q Consensus 61 ~ADviiINTCs-------V~~~ae~k~~~~i~~~~~~~~~~~k~~p~~~IvVtGC 108 (469)
++.+.|--||- -|.-+-...+..+.++.... ..|..+|+++|=
T Consensus 41 ~~pvLIEATsNQVnQ~GGYTGmtP~dF~~~V~~iA~~~-----gf~~~~iiLGGD 90 (424)
T pfam08013 41 GSPVLIEATSNQVNQFGGYTGMTPADFRDFVFEIADEV-----GFPRERLILGGD 90 (424)
T ss_pred CCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-----CCCHHHEEECCC
T ss_conf 99089996654334678858999899999999999981-----977888785477
No 155
>pfam03016 Exostosin Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear.
Probab=63.88 E-value=11 Score=17.53 Aligned_cols=52 Identities=15% Similarity=0.186 Sum_probs=33.9
Q ss_pred CEEEEEEECC----------------CCCCHHHHHHHHHHHHHCCCEECCCCCCCCEEEEE---CCCCCHH
Q ss_conf 6079999579----------------85688789999999998798687760108899992---7832507
Q gi|255764472|r 24 PQRFFVKSYG----------------CQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLN---TCHIREK 75 (469)
Q Consensus 24 ~kkv~i~TlG----------------C~~N~~Dse~i~~~L~~~G~~~~~~~~~ADviiIN---TCsV~~~ 75 (469)
+.|||+.-+- |..+++-+|.+.-......--.|.||++||+.+|= +|..+..
T Consensus 4 ~~kVYVYdlp~~fn~~~~~~~~~~~~~~t~~y~~E~~f~~~l~~s~~rT~dP~eAdlFyvP~~~~~~~~~~ 74 (289)
T pfam03016 4 GLKVYVYDLPPRFNLLGEDVLPKTSWYLTHQYAAEVILHKSILESRFRTDDPDEADLFFVPFYTSLSVRNL 74 (289)
T ss_pred CCEEEEEECCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHCCEEEECCHHHHCCCCC
T ss_conf 67799873983655232356767886554026899999999984985328955730899541222113553
No 156
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=62.53 E-value=11 Score=17.36 Aligned_cols=69 Identities=14% Similarity=0.360 Sum_probs=44.1
Q ss_pred ECCCCCCHHHHHHHHHHHHHCCCE-----ECCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 579856887899999999987986-----877601088999927832507999999999999987676642189818999
Q gi|255764472|r 31 SYGCQMNVYDSLRMEDMFFSQGYE-----RVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVV 105 (469)
Q Consensus 31 TlGC~~N~~Dse~i~~~L~~~G~~-----~~~~~~~ADviiINTCsV~~~ae~k~~~~i~~~~~~~~~~~k~~p~~~IvV 105 (469)
+-||.- .++..+ ..+|. .+.+..|-|+|. -++++..+.|..+.+ +-+|++..|+
T Consensus 33 ~~GC~~------~~~~~~-~~~~~e~~~~~sT~l~E~dvVf--------GGe~kL~~aI~~~~~------~~~P~~i~V~ 91 (429)
T cd03466 33 SQGCST------YIRRHM-ARHYNEPVDIASSSLNEETTVY--------GGEKNLKKGLKNVIE------QYNPEVIGIA 91 (429)
T ss_pred HHHHHH------HHHHHH-HCCCCCCCCCCCCCCCCCCEEE--------CHHHHHHHHHHHHHH------HCCCCEEEEE
T ss_conf 287799------998875-2156888577656898675676--------759999999999998------4199889996
Q ss_pred ECCCCCCCHHHHHHH
Q ss_conf 647301087889874
Q gi|255764472|r 106 AGCVAQAEGEEILRR 120 (469)
Q Consensus 106 tGC~aq~~~e~l~~~ 120 (469)
++|.++.-++++...
T Consensus 92 sTC~~e~IGDDi~~v 106 (429)
T cd03466 92 TTCLSETIGEDVPRI 106 (429)
T ss_pred CCCHHHHHCCCHHHH
T ss_conf 574386523639999
No 157
>KOG0924 consensus
Probab=62.30 E-value=3.6 Score=20.98 Aligned_cols=13 Identities=8% Similarity=0.023 Sum_probs=7.4
Q ss_pred CCCCCCCCCCCHH
Q ss_conf 3324468111001
Q gi|255764472|r 184 EGCDKFCTFCVVP 196 (469)
Q Consensus 184 ~GC~~~CsfC~ip 196 (469)
-+|--.|.||..+
T Consensus 642 I~yVID~Gy~K~k 654 (1042)
T KOG0924 642 IRYVIDTGYCKLK 654 (1042)
T ss_pred EEEEEECCCEEEE
T ss_conf 4899725724564
No 158
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=62.00 E-value=11 Score=17.29 Aligned_cols=28 Identities=14% Similarity=0.292 Sum_probs=24.3
Q ss_pred EECCCCCCHHHHHHHHHHHHHCCCEECC
Q ss_conf 9579856887899999999987986877
Q gi|255764472|r 30 KSYGCQMNVYDSLRMEDMFFSQGYERVN 57 (469)
Q Consensus 30 ~TlGC~~N~~Dse~i~~~L~~~G~~~~~ 57 (469)
++.|-.++.-|--.|...|.+.|+...+
T Consensus 17 Q~~g~~fs~~~K~~ia~~L~~~GV~~IE 44 (378)
T PRK11858 17 QTPGVVFTNEEKLAIARMLDEIGVDQIE 44 (378)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCEEE
T ss_conf 7999999999999999999981989999
No 159
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=61.86 E-value=8.1 Score=18.40 Aligned_cols=197 Identities=18% Similarity=0.217 Sum_probs=102.6
Q ss_pred CCCCHHH-HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 1110012-213764100588999887631013310587314541134113444310002167886204443001354421
Q gi|255764472|r 191 TFCVVPY-TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSH 269 (469)
Q Consensus 191 sfC~ip~-~RG~~rSr~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y~g~~~~~~~~~l~~Ll~~l~~i~~~~riR~~s~~ 269 (469)
.||--|+ .-|..+| .+++..+.+.|...+. -|.+ | |.|- ..|..++....+.. +++-++ ++
T Consensus 47 ~f~l~~~n~dGtCKS--a~~~~sDLe~l~~~t~-~IR~-------Y-~sDC----n~le~v~pAa~~~g--~kv~lG-iw 108 (305)
T COG5309 47 AFTLGPYNDDGTCKS--ADQVASDLELLASYTH-SIRT-------Y-GSDC----NTLENVLPAAEASG--FKVFLG-IW 108 (305)
T ss_pred CEECCCCCCCCCCCC--HHHHHHHHHHHCCCCC-EEEE-------E-ECCC----HHHHHHHHHHHHCC--CEEEEE-EE
T ss_conf 346045688887767--8998768998605783-3788-------6-0242----05664678887358--359998-76
Q ss_pred CC-CC----CCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCHH
Q ss_conf 00-01----00036652022111220133211145789987303334411467899987401344320000013522012
Q gi|255764472|r 270 PR-DM----SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETD 344 (469)
Q Consensus 270 P~-~~----~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~~~r~~~p~~~i~tdiIvGfPgETe 344 (469)
|. ++ ++..+..+.... -.+++ -.+-=||..+- |+.-++++..+.|...|.+...+.+..- || --|+-
T Consensus 109 ~tdd~~~~~~~til~ay~~~~-~~d~v-~~v~VGnEal~---r~~~tasql~~~I~~vrsav~~agy~gp--V~-T~dsw 180 (305)
T COG5309 109 PTDDIHDAVEKTILSAYLPYN-GWDDV-TTVTVGNEALN---RNDLTASQLIEYIDDVRSAVKEAGYDGP--VT-TVDSW 180 (305)
T ss_pred ECCCHHHHHHHHHHHHHHCCC-CCCCE-EEEEECHHHHH---CCCCCHHHHHHHHHHHHHHHHHCCCCCC--EE-ECCCC
T ss_conf 665034468899999876017-88722-79996425652---6888899999999999999986177786--03-02463
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHEEECCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCC-C
Q ss_conf 478988633221011100200001112012321436889899999999999999999999999857978999984256-8
Q gi|255764472|r 345 DDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEKHG-K 423 (469)
Q Consensus 345 edf~~Tl~~i~~~~~~~~~vf~yS~r~gT~Aa~m~~qV~~~vk~~R~~~l~~~~~~~~~~~~~~~iG~~~~Vlve~~~-~ 423 (469)
--+.+-=++++...|-.+|.|+|- .|++.+.+-+.. ..++++++ +.-.|.+..|+|.|.+ +
T Consensus 181 ~~~~~np~l~~~SDfia~N~~aYw--d~~~~a~~~~~f----~~~q~e~v------------qsa~g~~k~~~v~EtGWP 242 (305)
T COG5309 181 NVVINNPELCQASDFIAANAHAYW--DGQTVANAAGTF----LLEQLERV------------QSACGTKKTVWVTETGWP 242 (305)
T ss_pred EEEECCHHHHHHHHHHHCCCCHHC--CCCCHHHHHHHH----HHHHHHHH------------HHHCCCCCCEEEEECCCC
T ss_conf 356178677512204200553001--466055302079----99999999------------986588750798505689
Q ss_pred CCCEEEEE
Q ss_conf 08689999
Q gi|255764472|r 424 EKGKLVGR 431 (469)
Q Consensus 424 ~~~~~~G~ 431 (469)
.+|...|-
T Consensus 243 S~G~~~G~ 250 (305)
T COG5309 243 SDGRTYGS 250 (305)
T ss_pred CCCCCCCC
T ss_conf 88874687
No 160
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=60.84 E-value=12 Score=17.15 Aligned_cols=39 Identities=26% Similarity=0.514 Sum_probs=32.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEECCCHHHH
Q ss_conf 352201247898863322101110020000111201232
Q gi|255764472|r 338 GFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 (469)
Q Consensus 338 GfPgETeedf~~Tl~~i~~~~~~~~~vf~yS~r~gT~Aa 376 (469)
+.||+-+=||...++-++++.++---.--|+|+..|.++
T Consensus 211 ~~PG~G~id~~~i~~aL~~~gY~G~i~~E~~p~~~~~~~ 249 (254)
T TIGR03234 211 HEPGTGEINYRFLFAVLDRLGYDGWVGLEYKPLTDTEAS 249 (254)
T ss_pred CCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCHHH
T ss_conf 899999738899999999839995599998668998676
No 161
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=59.13 E-value=13 Score=16.95 Aligned_cols=28 Identities=21% Similarity=0.192 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 8999999999999999999999998579
Q gi|255764472|r 384 ENVKAERLLCLQKKLREQQVSFNDACVG 411 (469)
Q Consensus 384 ~~vk~~R~~~l~~~~~~~~~~~~~~~iG 411 (469)
+.+..+=.++|.+..++..++..+..+|
T Consensus 267 p~~i~~i~~~L~~~l~~~G~~si~e~~G 294 (296)
T cd04740 267 PEAFKEIIEGLEAYLDEEGIKSIEELVG 294 (296)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHCC
T ss_conf 2799999999999999839998999503
No 162
>PRK06464 phosphoenolpyruvate synthase; Validated
Probab=59.03 E-value=7 Score=18.84 Aligned_cols=12 Identities=17% Similarity=0.058 Sum_probs=4.8
Q ss_pred HHHHHCCCEEEE
Q ss_conf 999857978999
Q gi|255764472|r 405 FNDACVGQIIEV 416 (469)
Q Consensus 405 ~~~~~iG~~~~V 416 (469)
..+.+-|+.+.+
T Consensus 563 i~~a~~~~pV~i 574 (794)
T PRK06464 563 IAAAFYPKPVIV 574 (794)
T ss_pred HHHHCCCCCEEE
T ss_conf 998618995899
No 163
>pfam01058 Oxidored_q6 NADH ubiquinone oxidoreductase, 20 Kd subunit.
Probab=58.33 E-value=13 Score=16.85 Aligned_cols=68 Identities=15% Similarity=0.330 Sum_probs=35.4
Q ss_pred CCCCCHHHHHH-HHHHH----HHCCCEECCCC----CCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 98568878999-99999----98798687760----10889999278325079999999999999876766421898189
Q gi|255764472|r 33 GCQMNVYDSLR-MEDMF----FSQGYERVNSM----DDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLV 103 (469)
Q Consensus 33 GC~~N~~Dse~-i~~~L----~~~G~~~~~~~----~~ADviiINTCsV~~~ae~k~~~~i~~~~~~~~~~~k~~p~~~I 103 (469)
||.+...+++- +...| ...|.....++ +++|+.+|.-..-++. ++..+.+.++ ++++...|
T Consensus 3 GC~~s~~~~~~~~~dil~~~~~~y~~~~~~~~~~~~~~~dillVeG~v~~~~--~~~~~~~~e~--------~~~ak~vI 72 (124)
T pfam01058 3 GCSISLLALHPPLLDLLDLISLRYHIPLMADPREIPEGADVLLVEGAVTRKP--KEALERLYEL--------APKAKYVI 72 (124)
T ss_pred CCHHHHHHCCCCHHHHHHHCCHHCCCEECCCCCCCCCCCCEEEEEECCCCCC--HHHHHHHHHH--------CCCCCEEE
T ss_conf 8069997539817778740002308734048787887830899970178887--8999999986--------42146389
Q ss_pred EEECCCC
Q ss_conf 9964730
Q gi|255764472|r 104 VVAGCVA 110 (469)
Q Consensus 104 vVtGC~a 110 (469)
.++-|..
T Consensus 73 AvG~CA~ 79 (124)
T pfam01058 73 AVGTCAA 79 (124)
T ss_pred EECCCCC
T ss_conf 9613425
No 164
>TIGR02491 NrdG anaerobic ribonucleoside-triphosphate reductase activating protein; InterPro: IPR012837 This enzyme is a member of the radical-SAM protein and utilises S-adenosyl methionine, an iron-sulphur cluster and a reductant (dihydroflavodoxin ) to produce a glycine-centred radical in the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, IPR009161 from INTERPRO). The two components form an alpha-2/beta-2 heterodimer.; GO: 0043365 [formate-C-acetyltransferase]-activating enzyme activity, 0051539 4 iron 4 sulfur cluster binding, 0005737 cytoplasm.
Probab=58.23 E-value=8 Score=18.40 Aligned_cols=77 Identities=17% Similarity=0.280 Sum_probs=43.9
Q ss_pred CCCCCCCCCCCCHHH---HH-HHHHH-HHHHHHHHHHHHH--HHCCCCEEEEECCCCCEEEECCCCC-CCCCCCHHHHHH
Q ss_conf 233244681110012---21-37641-0058899988763--1013310587314541134113444-310002167886
Q gi|255764472|r 183 QEGCDKFCTFCVVPY---TR-GIEIS-RSLSQVVDEARKL--IDNGVCEITLLGQNVNAWRGKGLDG-EKCTFSDLLYSL 254 (469)
Q Consensus 183 ~~GC~~~CsfC~ip~---~R-G~~rS-r~~~~Iv~ei~~l--~~~G~kEi~L~g~d~~~Y~g~~~~~-~~~~l~~Ll~~l 254 (469)
.-||.|.|-=|==|. .+ |...+ ...++|++++..- .-+| |.|+ ||+=++. +-..|.+|++++
T Consensus 22 vaGC~H~C~GC~N~~TW~~~~G~~~t~~~~~~i~~~l~~~~~~~~G---~tls-------GGDPL~~~N~~~~~~l~k~~ 91 (158)
T TIGR02491 22 VAGCKHHCEGCFNKETWNFNGGEEFTEELEKEIIRDLNDNPILIDG---LTLS-------GGDPLYPANVEELIELVKKI 91 (158)
T ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEE---EEEC-------CCCCCCCCCHHHHHHHHHHH
T ss_conf 0476038888878355576789420368899999985128816630---1431-------88888724436899999999
Q ss_pred HC-CCCC-CCCCCCCCC
Q ss_conf 20-4443-001354421
Q gi|255764472|r 255 SE-IKGL-VRLRYTTSH 269 (469)
Q Consensus 255 ~~-i~~~-~riR~~s~~ 269 (469)
.+ .|.. .|+.=+|..
T Consensus 92 k~~~P~kdIW~wTGY~~ 108 (158)
T TIGR02491 92 KAELPEKDIWLWTGYTW 108 (158)
T ss_pred HHHCCCCCEEEECCCCH
T ss_conf 98578996898307668
No 165
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=58.10 E-value=4.7 Score=20.11 Aligned_cols=18 Identities=17% Similarity=0.113 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHCCCC
Q ss_conf 058899988763101331
Q gi|255764472|r 206 SLSQVVDEARKLIDNGVC 223 (469)
Q Consensus 206 ~~~~Iv~ei~~l~~~G~k 223 (469)
+.++|.+=++...++|++
T Consensus 80 T~~di~eiv~YA~~rgI~ 97 (326)
T cd06564 80 TKEEFKELIAYAKDRGVN 97 (326)
T ss_pred CHHHHHHHHHHHHHCCCE
T ss_conf 899999999999984998
No 166
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=57.87 E-value=9.3 Score=17.91 Aligned_cols=39 Identities=13% Similarity=0.171 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHH
Q ss_conf 799999999999998767664218981899964730108788987
Q gi|255764472|r 75 KAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILR 119 (469)
Q Consensus 75 ~ae~k~~~~i~~~~~~~~~~~k~~p~~~IvVtGC~aq~~~e~l~~ 119 (469)
-.+++..+.|..+.+ +-+|+...|+++|.++.-++++..
T Consensus 70 Gg~~~L~~~i~~~~~------~~~P~~i~V~tTC~~eiIGdDi~~ 108 (406)
T cd01967 70 GGEKKLKKAIKEAYE------RFPPKAIFVYSTCPTGLIGDDIEA 108 (406)
T ss_pred CCHHHHHHHHHHHHH------HCCCCEEEEECCCCHHHHCCCHHH
T ss_conf 809999999999998------569978999777809985876899
No 167
>PRK10425 DNase TatD; Provisional
Probab=57.78 E-value=5.9 Score=19.43 Aligned_cols=28 Identities=14% Similarity=0.158 Sum_probs=14.8
Q ss_pred CCCCC-CH-HHHHHHHHHHHHHHHHHHCCC
Q ss_conf 13522-01-247898863322101110020
Q gi|255764472|r 337 VGFPG-ET-DDDFRATMDLVDKIGYAQAFS 364 (469)
Q Consensus 337 vGfPg-ET-eedf~~Tl~~i~~~~~~~~~v 364 (469)
.||+| =| ..--.++-+.++.++++++-+
T Consensus 171 is~~G~i~~~~~~~~lr~~v~~iPldrlLl 200 (258)
T PRK10425 171 IGITGWVCDERRGLELRELLPLIPAEKLLI 200 (258)
T ss_pred EEECCCEECCCCCHHHHHHHHHCCHHHEEE
T ss_conf 986361203643068999998499879798
No 168
>PRK11121 nrdG anaerobic ribonucleotide reductase-activating protein; Provisional
Probab=56.45 E-value=11 Score=17.51 Aligned_cols=64 Identities=20% Similarity=0.351 Sum_probs=33.1
Q ss_pred CCCCCCCCCCCCHHHHH----HHHHHH-HHHHHHHHHHHHH--HCCCCEEEEECCCCCEEEECCCCC-CCCCCCHHHHHH
Q ss_conf 23324468111001221----376410-0588999887631--013310587314541134113444-310002167886
Q gi|255764472|r 183 QEGCDKFCTFCVVPYTR----GIEISR-SLSQVVDEARKLI--DNGVCEITLLGQNVNAWRGKGLDG-EKCTFSDLLYSL 254 (469)
Q Consensus 183 ~~GC~~~CsfC~ip~~R----G~~rSr-~~~~Iv~ei~~l~--~~G~kEi~L~g~d~~~Y~g~~~~~-~~~~l~~Ll~~l 254 (469)
-.||+++|--|.-|.+. |...+. ..++|+++++... ..| |.|+| |.-+.. +...+.+|++++
T Consensus 23 ~qGC~~~C~GC~Np~tw~~~~G~~~~~~~~~~ii~~l~~~~~~~~G---vTisG-------GEP~~q~~~~~l~~l~~~~ 92 (154)
T PRK11121 23 VSGCVHQCPGCYNKSTWRLNSGHPFTKAMEDQIIADLNDTRIKRQG---LSLSG-------GDPLHPQNVPAILKLVKRV 92 (154)
T ss_pred ECCCCCCCCCCCCHHHCCCCCCEECHHHHHHHHHHHHHHCCCCCCC---EEEEC-------CCCCCCCCHHHHHHHHHHH
T ss_conf 5688777979999778587589776199999999987642355475---38868-------8826514799999999999
Q ss_pred HC
Q ss_conf 20
Q gi|255764472|r 255 SE 256 (469)
Q Consensus 255 ~~ 256 (469)
.+
T Consensus 93 k~ 94 (154)
T PRK11121 93 KA 94 (154)
T ss_pred HH
T ss_conf 97
No 169
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=56.32 E-value=11 Score=17.41 Aligned_cols=20 Identities=20% Similarity=0.381 Sum_probs=11.4
Q ss_pred HHHHHHHHCCCCEEEEECCC
Q ss_conf 98876310133105873145
Q gi|255764472|r 212 DEARKLIDNGVCEITLLGQN 231 (469)
Q Consensus 212 ~ei~~l~~~G~kEi~L~g~d 231 (469)
+-++...+.|+.=|.|.|-|
T Consensus 145 ~AA~~A~~AGfDgVEIh~ah 164 (327)
T cd02803 145 AAARRAKEAGFDGVEIHGAH 164 (327)
T ss_pred HHHHHHHHCCCCEEEECCCC
T ss_conf 99999998499989983576
No 170
>TIGR00695 uxuA mannonate dehydratase; InterPro: IPR004628 This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.; GO: 0008927 mannonate dehydratase activity, 0006064 glucuronate catabolic process.
Probab=55.84 E-value=12 Score=17.02 Aligned_cols=119 Identities=17% Similarity=0.226 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHC
Q ss_conf 41005889998876310133105873145411341134443100021678862044430013544210001000366520
Q gi|255764472|r 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHG 282 (469)
Q Consensus 203 rSr~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y~g~~~~~~~~~l~~Ll~~l~~i~~~~riR~~s~~P~~~~~~li~~~~ 282 (469)
+.+=+++=-+-++.|+.-|++-| +| .+ .|-+.|-|--+ ...+-
T Consensus 80 ~~~~I~NYkQTlRNLA~~Gi~~v--------CY---NF----------------MPVlDWTRTDl----------~~~L~ 122 (396)
T TIGR00695 80 YERWIENYKQTLRNLAQCGIKTV--------CY---NF----------------MPVLDWTRTDL----------AYELP 122 (396)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEE--------EE---CC----------------CCCCCCCHHCC----------CCCCC
T ss_conf 47889989999998862883178--------73---36----------------65655220023----------41266
Q ss_pred CCCCCCCCEEEEEECCCHHHHHHH--CCCCCCCHHHHHHHHHHHHC--CCCCCCEEEECCCCC----CHHHHHHHHHHHH
Q ss_conf 221112201332111457899873--03334411467899987401--344320000013522----0124789886332
Q gi|255764472|r 283 DLDVLMPYLHLPVQSGSDRILKSM--NRRHTAYEYRQIIDRIRSVR--PDIAISSDFIVGFPG----ETDDDFRATMDLV 354 (469)
Q Consensus 283 ~~~~i~~~lhlpiQSgs~~vLk~M--~R~~~~e~~~~~i~~~r~~~--p~~~i~tdiIvGfPg----ETeedf~~Tl~~i 354 (469)
+-.+-..|=|+-++|-+=.|||+= .+.|+.++.....+....-- ..+.++-.+|.|.|| +|=+.|++.++.-
T Consensus 123 DGS~AL~F~~~~~~a~~~HiLkRP~ae~~Y~~~E~~~~~~~~~~M~~~D~a~LtRniiaGLPG~E~G~~L~~~~~~l~~Y 202 (396)
T TIGR00695 123 DGSKALRFDKIKFAALELHILKRPDAEKDYTEEELIRAVEEASDMSEEDKARLTRNIIAGLPGAEEGYTLDRFKELLAAY 202 (396)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 62023456567776552231038873110107899999998851026578988788750788888631589999999874
Q ss_pred HHHH
Q ss_conf 2101
Q gi|255764472|r 355 DKIG 358 (469)
Q Consensus 355 ~~~~ 358 (469)
+++.
T Consensus 203 ~~id 206 (396)
T TIGR00695 203 KDID 206 (396)
T ss_pred CCHH
T ss_conf 0444
No 171
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=55.46 E-value=14 Score=16.52 Aligned_cols=72 Identities=11% Similarity=0.204 Sum_probs=46.4
Q ss_pred ECCCCCCHHHHHHHHHHHHH--------CCCEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC-CC
Q ss_conf 57985688789999999998--------7986877601088999927832507999999999999987676642189-81
Q gi|255764472|r 31 SYGCQMNVYDSLRMEDMFFS--------QGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGG-DL 101 (469)
Q Consensus 31 TlGC~~N~~Dse~i~~~L~~--------~G~~~~~~~~~ADviiINTCsV~~~ae~k~~~~i~~~~~~~~~~~k~~p-~~ 101 (469)
--||..+..++ +..+.. .-+..+.+..|.|+|.= +++|..+.|..+-+ +-+| .+
T Consensus 40 P~gCa~~sw~~---r~~~~~~~~~~~~~~~~~~sTdl~E~DvVfG--------GekKL~~aI~ea~~------~~~P~ka 102 (421)
T cd01976 40 PVGCGQYSWAT---RRNYYRGETGVDNFGTMQFTTDFQEKDIVFG--------GDKKLAKAIDEAYE------LFPLNKG 102 (421)
T ss_pred CCCHHHHHHHH---CCCCCCCCCCCCCCCCCEEECCCCCCCEEEC--------HHHHHHHHHHHHHH------HCCCCEE
T ss_conf 31013234432---2534568764311122212457985641336--------79999999999998------5797308
Q ss_pred EEEEECCCCCCCHHHHHH
Q ss_conf 899964730108788987
Q gi|255764472|r 102 LVVVAGCVAQAEGEEILR 119 (469)
Q Consensus 102 ~IvVtGC~aq~~~e~l~~ 119 (469)
..|.+.|.+..-++++..
T Consensus 103 IfV~sTC~~glIGDDI~a 120 (421)
T cd01976 103 ISVQSECPVGLIGDDIEA 120 (421)
T ss_pred EEEEECCCHHHHCCCHHH
T ss_conf 999923737865568999
No 172
>pfam06002 CST-I Alpha-2,3-sialyltransferase (CST-I). This family consists of several alpha-2,3-sialyltransferase (CST-I) proteins largely found in Campylobacter jejuni.
Probab=55.02 E-value=7.9 Score=18.44 Aligned_cols=83 Identities=22% Similarity=0.228 Sum_probs=38.5
Q ss_pred HHHHCCCCEEEEECCCCCEEEECC---CCCCCCCCCHHHHHHHCCCCCCCCCCC-CCCCCCCCCHHHHHHCCC-------
Q ss_conf 631013310587314541134113---444310002167886204443001354-421000100036652022-------
Q gi|255764472|r 216 KLIDNGVCEITLLGQNVNAWRGKG---LDGEKCTFSDLLYSLSEIKGLVRLRYT-TSHPRDMSDCLIKAHGDL------- 284 (469)
Q Consensus 216 ~l~~~G~kEi~L~g~d~~~Y~g~~---~~~~~~~l~~Ll~~l~~i~~~~riR~~-s~~P~~~~~~li~~~~~~------- 284 (469)
..++.|+|||.|+|.|..+= |.+ ++..+.++..| + ++...-.-+ .+|-...|-+-+++....
T Consensus 139 vAiaLGYKeIYL~GIDFYq~-~~~~yafd~~~~n~~~l---~---p~fk~~k~~~~~Hsk~~Di~AL~~lqk~y~vkiY~ 211 (291)
T pfam06002 139 VAIALGYKEIYLSGIDFYQN-GGGHYAFENQKKNILKL---L---PGFKNEKSSFICHSKNYDIQALELLQKYYKVKIYA 211 (291)
T ss_pred HHHHHCCCEEEEEEEEHHHC-CCCCCCCCCCCCCHHHH---C---CCCCCCCCCCCCCCHHCCHHHHHHHHHHHCEEEEE
T ss_conf 99981665699851141205-89865322445007776---8---57443554444432220799999999861803899
Q ss_pred ----CCCCCCEEEEEECCCHHHHHH
Q ss_conf ----111220133211145789987
Q gi|255764472|r 285 ----DVLMPYLHLPVQSGSDRILKS 305 (469)
Q Consensus 285 ----~~i~~~lhlpiQSgs~~vLk~ 305 (469)
.-+++|+-|+-|-+|+-+|-.
T Consensus 212 L~p~S~L~~~~~L~pn~~~~F~~~e 236 (291)
T pfam06002 212 LCPNSPLANHFPLSPNINSNFILLE 236 (291)
T ss_pred ECCCCHHHHCCCCCCCCCCCEEEHH
T ss_conf 7798368753005888998716634
No 173
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=54.26 E-value=13 Score=16.91 Aligned_cols=26 Identities=19% Similarity=0.363 Sum_probs=13.7
Q ss_pred HHHHHHHH----HHHHHHCCCCEEEEECCC
Q ss_conf 05889998----876310133105873145
Q gi|255764472|r 206 SLSQVVDE----ARKLIDNGVCEITLLGQN 231 (469)
Q Consensus 206 ~~~~Iv~e----i~~l~~~G~kEi~L~g~d 231 (469)
.+++|+++ ++...+.|+.=|.|.+-+
T Consensus 143 eI~~ii~~f~~AA~rA~~AGfDgVEiH~ah 172 (338)
T cd04733 143 EIEDVIDRFAHAARLAQEAGFDGVQIHAAH 172 (338)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 999999999999999998399989982365
No 174
>pfam04748 Polysacc_deac_2 Divergent polysaccharide deacetylase. This family is divergently related to pfam01522 (personal obs:Yeats C).
Probab=54.16 E-value=15 Score=16.38 Aligned_cols=16 Identities=6% Similarity=0.096 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHC
Q ss_conf 0058899988763101
Q gi|255764472|r 205 RSLSQVVDEARKLIDN 220 (469)
Q Consensus 205 r~~~~Iv~ei~~l~~~ 220 (469)
-+.++|.+.++...+.
T Consensus 71 ~~~~~i~~~l~~~l~~ 86 (213)
T pfam04748 71 MSAEEIEKRLEAALSR 86 (213)
T ss_pred CCHHHHHHHHHHHHHH
T ss_conf 9999999999999987
No 175
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=53.57 E-value=15 Score=16.31 Aligned_cols=18 Identities=22% Similarity=0.421 Sum_probs=8.1
Q ss_pred EECCCCCCHHHHHHHHHH
Q ss_conf 001352201247898863
Q gi|255764472|r 335 FIVGFPGETDDDFRATMD 352 (469)
Q Consensus 335 iIvGfPgETeedf~~Tl~ 352 (469)
+.|||==-|.||..+..+
T Consensus 205 v~vGFGIs~~e~v~~~~~ 222 (263)
T CHL00200 205 IILGFGISTSEQIKQIKG 222 (263)
T ss_pred EEEECCCCCHHHHHHHHH
T ss_conf 487358799999999974
No 176
>PRK09202 nusA transcription elongation factor NusA; Validated
Probab=53.39 E-value=15 Score=16.29 Aligned_cols=12 Identities=17% Similarity=0.354 Sum_probs=6.3
Q ss_pred CCCCCCCEEEEE
Q ss_conf 567777257874
Q gi|255764472|r 170 YNRKRGVTAFLT 181 (469)
Q Consensus 170 ~~~~~~~~a~ik 181 (469)
+....+.++||.
T Consensus 173 ~~~Gdrik~~i~ 184 (428)
T PRK09202 173 FRPGDRVRAYVY 184 (428)
T ss_pred CCCCCEEEEEEE
T ss_conf 799987999872
No 177
>PRK09401 reverse gyrase; Reviewed
Probab=53.00 E-value=16 Score=16.25 Aligned_cols=32 Identities=19% Similarity=0.341 Sum_probs=18.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 681110012213764100588999887631013310587
Q gi|255764472|r 189 FCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITL 227 (469)
Q Consensus 189 ~CsfC~ip~~RG~~rSr~~~~Iv~ei~~l~~~G~kEi~L 227 (469)
.|-+|-.+..+ .-++|++.++.++.. +.||.|
T Consensus 693 ~cP~Cgs~~i~------dk~~vv~aLR~lA~E-vDeVyI 724 (1176)
T PRK09401 693 RCPRCGSTNID------DKEEIIEALRELALE-VDEVLI 724 (1176)
T ss_pred CCCCCCCCCCC------CHHHHHHHHHHHHHH-CCEEEE
T ss_conf 68877888756------689999999999875-598998
No 178
>pfam04016 DUF364 Domain of unknown function (DUF364). Archaeal domain of unknown function.
Probab=52.30 E-value=10 Score=17.59 Aligned_cols=35 Identities=14% Similarity=0.357 Sum_probs=16.9
Q ss_pred EEEEECCCCCCCCCCCCHHHH----------HHHHHHHHHHHHHHHHH
Q ss_conf 787412332446811100122----------13764100588999887
Q gi|255764472|r 178 AFLTIQEGCDKFCTFCVVPYT----------RGIEISRSLSQVVDEAR 215 (469)
Q Consensus 178 a~ikI~~GC~~~CsfC~ip~~----------RG~~rSr~~~~Iv~ei~ 215 (469)
..++.++|+ |..|-+|.- .|.+..+|..++.+.+.
T Consensus 24 t~V~~~~G~---~Gla~t~~~~~~~~~~~~~~g~l~g~~~~el~~~~~ 68 (229)
T pfam04016 24 TLVKLSNGS---CGVAYTPPEEEPSARVLPLAGELVGKSAEELAELLL 68 (229)
T ss_pred EEEEECCCC---EEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHC
T ss_conf 899978998---899872576788754456554535998999998740
No 179
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=51.99 E-value=16 Score=16.14 Aligned_cols=95 Identities=15% Similarity=0.133 Sum_probs=62.5
Q ss_pred CCCCCHHHHHHHHHHHH--CCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHH----------HHCCCHHEEECCCHHHH
Q ss_conf 33441146789998740--1344320000013522012478988633221011----------10020000111201232
Q gi|255764472|r 309 RHTAYEYRQIIDRIRSV--RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGY----------AQAFSFKYSPRLGTPGS 376 (469)
Q Consensus 309 ~~~~e~~~~~i~~~r~~--~p~~~i~tdiIvGfPgETeedf~~Tl~~i~~~~~----------~~~~vf~yS~r~gT~Aa 376 (469)
-|+.++..+.++.+-+. .|-+.++. |=+.+.|+++++|..+..- .|...+...+.+|-.|.
T Consensus 225 ~yt~~ea~~~fk~~~~a~~~Pwv~LSA-------GV~~~~F~~~l~~A~~aGa~fsG~L~GRA~W~dai~~~~~~~~~a~ 297 (340)
T PRK12858 225 AYTQEEAFKLFREQSDATPLPFIFLSA-------GVTPELFLRELEFAKQAGADFNGVLCGRATWQDAIEIFAPEGRAAG 297 (340)
T ss_pred CCCHHHHHHHHHHHHHCCCCCEEEECC-------CCCHHHHHHHHHHHHHCCCCCCCEEECHHHHHHHHHCCCCCCHHHH
T ss_conf 135999999999997354999799818-------9998999999999998599723553457877757741464359999
Q ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCE
Q ss_conf 1436889899999999999999999999999857978
Q gi|255764472|r 377 NMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQI 413 (469)
Q Consensus 377 ~m~~qV~~~vk~~R~~~l~~~~~~~~~~~~~~~iG~~ 413 (469)
. ..+ ..+-.+|..+|.++..+....|.+++=|..
T Consensus 298 ~--~wL-~t~g~~~i~~Ln~vl~~~A~pW~~kyg~~~ 331 (340)
T PRK12858 298 E--AWL-NTEGVANITRLNEVLTKGAKPWFDKYGGKD 331 (340)
T ss_pred H--HHH-HHHHHHHHHHHHHHHHHCCCCCHHHHCCCC
T ss_conf 9--999-988699999999999801874267518844
No 180
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=51.79 E-value=7.2 Score=18.76 Aligned_cols=16 Identities=19% Similarity=0.233 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHCCC
Q ss_conf 5889998876310133
Q gi|255764472|r 207 LSQVVDEARKLIDNGV 222 (469)
Q Consensus 207 ~~~Iv~ei~~l~~~G~ 222 (469)
.++|.+=++...++|+
T Consensus 71 ~~di~eiv~yA~~rgI 86 (303)
T cd02742 71 YAQLKDIIEYAAARGI 86 (303)
T ss_pred HHHHHHHHHHHHHCCC
T ss_conf 9999999999998499
No 181
>TIGR01182 eda 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related . They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process.
Probab=51.32 E-value=16 Score=16.21 Aligned_cols=21 Identities=19% Similarity=0.387 Sum_probs=11.4
Q ss_pred CHHHHHHHHHHHHHCCCEECC
Q ss_conf 887899999999987986877
Q gi|255764472|r 37 NVYDSLRMEDMFFSQGYERVN 57 (469)
Q Consensus 37 N~~Dse~i~~~L~~~G~~~~~ 57 (469)
|..|+--++..|.+.|....+
T Consensus 18 ~~~~A~~lA~aL~egG~~~~E 38 (205)
T TIGR01182 18 DVEDALPLAKALIEGGLRVLE 38 (205)
T ss_pred CHHHHHHHHHHHHHCCCEEEE
T ss_conf 787778999999867980898
No 182
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase; InterPro: IPR004620 The enzyme activities methylenetetrahydrofolate reductase (1.5.1.20 from EC) and 5,10-methylenetetrahydrofolate reductase (FADH) (1.7.99.5 from EC) differ in that the former (assigned in many eukaryotes) is defined to use NADP+ as an acceptor, while the latter (assigned in many bacteria) is flexible with respect to the acceptor. Both convert 5-methyltetrahydrofolate to 5,10-methylenetetrahydrofolate. From a larger set of proteins assigned as one or the other, this family describes the subset of proteins found in bacteria, and currently designated 5,10-methylenetetrahydrofolate reductase. This protein is an FAD-containing flavoprotein.; GO: 0009086 methionine biosynthetic process.
Probab=51.19 E-value=17 Score=16.05 Aligned_cols=127 Identities=17% Similarity=0.267 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCC---CCCCCCCHHHHHHHCC--CC-----------CCCCCCCCCCC
Q ss_conf 58899988763101331058731454113411344---4310002167886204--44-----------30013544210
Q gi|255764472|r 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD---GEKCTFSDLLYSLSEI--KG-----------LVRLRYTTSHP 270 (469)
Q Consensus 207 ~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y~g~~~~---~~~~~l~~Ll~~l~~i--~~-----------~~riR~~s~~P 270 (469)
-++|.+=++.+.+.|++.|+.+==|.. . +.++. ++...-.||++-|.+. .+ .+.|-+. +||
T Consensus 87 ~~e~~~~L~~y~~~Gi~~ilALRGD~p-~-~~~~~~~~~~~~yA~eLV~~Ir~~~g~~GIy~~~E~V~~~F~I~VA-aYP 163 (302)
T TIGR00676 87 REEIEEILREYRELGIRNILALRGDPP-D-ETDFEPAPGGFKYASELVEFIRSEHGFGGIYLDGEDVTEDFEIGVA-AYP 163 (302)
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCC-C-CCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEECCCCCCCCCEEEEE-ECC
T ss_conf 899999999998748867987437688-8-8865658876677689999998368998556477645765505564-258
Q ss_pred CC------CCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCC-CCCH
Q ss_conf 00------1000366520221112201332111457899873033344114678999874013443200000135-2201
Q gi|255764472|r 271 RD------MSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGF-PGET 343 (469)
Q Consensus 271 ~~------~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~~~r~~~p~~~i~tdiIvGf-PgET 343 (469)
.. +..++-.+-+ | +..|-|...--| -|+.++|.+++++++++ |+ ...||=|- |
T Consensus 164 E~Hpea~~~~~D~~nLK~---K--------VdAGAd~aITQl--FFdnd~y~rF~d~c~~a--GI--~~PI~PGIMP--- 223 (302)
T TIGR00676 164 EKHPEAPNLEEDIENLKR---K--------VDAGADYAITQL--FFDNDDYYRFVDRCRAA--GI--DVPIIPGIMP--- 223 (302)
T ss_pred CCCCCCCCHHHHHHHHHH---H--------HHHCCCCEEEEE--ECCHHHHHHHHHHHHHC--CC--CEEEECCCCC---
T ss_conf 878888888999999999---8--------862778033111--11566788899999987--89--5000167236---
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 2478988633221
Q gi|255764472|r 344 DDDFRATMDLVDK 356 (469)
Q Consensus 344 eedf~~Tl~~i~~ 356 (469)
=..|.+.++|++.
T Consensus 224 i~n~~q~~Rf~~~ 236 (302)
T TIGR00676 224 ITNFKQLLRFAES 236 (302)
T ss_pred CCCHHHHHHHHHH
T ss_conf 3676789999664
No 183
>pfam00148 Oxidored_nitro Nitrogenase component 1 type Oxidoreductase.
Probab=51.13 E-value=17 Score=16.04 Aligned_cols=75 Identities=15% Similarity=0.185 Sum_probs=42.0
Q ss_pred EECCCCCCHHHHHHHHHHHHHCCCEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 95798568878999999999879868776010889999278325079999999999999876766421898189996473
Q gi|255764472|r 30 KSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCV 109 (469)
Q Consensus 30 ~TlGC~~N~~Dse~i~~~L~~~G~~~~~~~~~ADviiINTCsV~~~ae~k~~~~i~~~~~~~~~~~k~~p~~~IvVtGC~ 109 (469)
=+-||.......-. ....+.-...+.+..+.|++. -.+++..+.|.++.+ +-+|+...|+++|.
T Consensus 22 gp~GC~~~~~~~~~--~~~~~~~~~~~T~l~E~d~v~--------Gg~~kL~~~i~~~~~------~~~p~~I~v~~tc~ 85 (398)
T pfam00148 22 GPQGCATYSRVTRT--RHFREPIPIFSTDLTEKDVVF--------GGEEKLEEAIREADK------RYKPKAIFVYTTCV 85 (398)
T ss_pred CCHHHHHHHHHHHH--HHCCCCCCCEECCCCCCCEEC--------CCHHHHHHHHHHHHH------HCCCCEEEEECCCC
T ss_conf 88048778988766--020688760224688333125--------859999999999997------35997899975671
Q ss_pred CCCCHHHHHHH
Q ss_conf 01087889874
Q gi|255764472|r 110 AQAEGEEILRR 120 (469)
Q Consensus 110 aq~~~e~l~~~ 120 (469)
++.-++++...
T Consensus 86 ~eiIGdDi~~v 96 (398)
T pfam00148 86 SELIGDDIEAV 96 (398)
T ss_pred HHHHCCCHHHH
T ss_conf 88728788999
No 184
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=51.10 E-value=17 Score=16.04 Aligned_cols=21 Identities=14% Similarity=0.014 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHCCCCEEEEE
Q ss_conf 889998876310133105873
Q gi|255764472|r 208 SQVVDEARKLIDNGVCEITLL 228 (469)
Q Consensus 208 ~~Iv~ei~~l~~~G~kEi~L~ 228 (469)
..|-+++..+.+.|++.|..+
T Consensus 73 ~~l~~~L~~~~~~Gi~niLaL 93 (274)
T cd00537 73 IELQSILLGAHALGIRNILAL 93 (274)
T ss_pred HHHHHHHHHHHHCCCCEEEEE
T ss_conf 999999999998598638873
No 185
>COG2014 Uncharacterized conserved protein [Function unknown]
Probab=51.03 E-value=17 Score=16.03 Aligned_cols=31 Identities=13% Similarity=0.173 Sum_probs=16.8
Q ss_pred CCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 1220133211145789987303334411467899987
Q gi|255764472|r 287 LMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 (469)
Q Consensus 287 i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~~~r 323 (469)
+.|-.+.=+-|||.-+ .+|.+.++...++.+
T Consensus 161 iLP~~Dvii~SaStlv------N~T~d~~Ld~ak~ak 191 (250)
T COG2014 161 ILPEVDVIIASASTLV------NGTLDMILDRAKKAK 191 (250)
T ss_pred HCCCCCEEEEECHHHH------CCCHHHHHHHHCCCC
T ss_conf 1555247998500343------475999986642575
No 186
>pfam02906 Fe_hyd_lg_C Iron only hydrogenase large subunit, C-terminal domain.
Probab=50.42 E-value=15 Score=16.48 Aligned_cols=26 Identities=12% Similarity=0.220 Sum_probs=17.5
Q ss_pred ECCCCCCHHHHHHHHHHHHHCCCEECC
Q ss_conf 579856887899999999987986877
Q gi|255764472|r 31 SYGCQMNVYDSLRMEDMFFSQGYERVN 57 (469)
Q Consensus 31 TlGC~~N~~Dse~i~~~L~~~G~~~~~ 57 (469)
.||+..|.. .+.|.+.|+.-||.-|.
T Consensus 29 ~~~~~~~~~-~~kl~~aLk~lGf~~V~ 54 (286)
T pfam02906 29 EFGLPPGTV-TGKLVAALRKLGFDYVF 54 (286)
T ss_pred HHCCCHHHH-HHHHHHHHHHCCCCEEE
T ss_conf 859981057-89999999985998999
No 187
>pfam00540 Gag_p17 gag gene protein p17 (matrix protein). The matrix protein forms an icosahedral shell associated with the inner membrane of the mature immunodeficiency virus.
Probab=49.71 E-value=14 Score=16.56 Aligned_cols=93 Identities=17% Similarity=0.375 Sum_probs=53.0
Q ss_pred CCCEEEEECCCCCEEEECCCCC---CCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEEEEC
Q ss_conf 3310587314541134113444---3100021678862044430013544210001000366520221112201332111
Q gi|255764472|r 221 GVCEITLLGQNVNAWRGKGLDG---EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQS 297 (469)
Q Consensus 221 G~kEi~L~g~d~~~Y~g~~~~~---~~~~l~~Ll~~l~~i~~~~riR~~s~~P~~~~~~li~~~~~~~~i~~~lhlpiQS 297 (469)
|++-=+|+|-.+..|.--.+.. .+..+..|...-.+++ | | .+++.|++.-..+.+++..+.-.++.
T Consensus 1 GAraS~l~g~kld~wekirLrpggKK~Y~lKHlVWAsrELe---R--F------alnp~LLeT~eGC~qil~qlqp~l~T 69 (140)
T pfam00540 1 GARASVLSGGELDKWEKIRLRPGGKKKYKLKHLVWASRELE---R--F------AVNPGLLETSEGCRKILGQLQPSLQT 69 (140)
T ss_pred CCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHH---H--H------HCCCHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 96433336655320332001699862144665767778888---7--7------06911434388899999983644444
Q ss_pred CCHHHHHHH---------CCCCCCCHHHHHHHHHHH
Q ss_conf 457899873---------033344114678999874
Q gi|255764472|r 298 GSDRILKSM---------NRRHTAYEYRQIIDRIRS 324 (469)
Q Consensus 298 gs~~vLk~M---------~R~~~~e~~~~~i~~~r~ 324 (469)
||..+-... +++..+.|..++++++.+
T Consensus 70 GSeeLkSL~NtvavLyCVH~~I~VkDTkEAl~kiee 105 (140)
T pfam00540 70 GSEGLRSLYNTVAVLYCVHQRIDVKDTKEALEKIEE 105 (140)
T ss_pred CCHHHHHHHHHHHHHEEEECCCCCCCHHHHHHHHHH
T ss_conf 528999898503552133048404737999999999
No 188
>TIGR01953 NusA transcription termination factor NusA; InterPro: IPR010213 This entry describes NusA, or N utilisation substance protein A, a bacterial transcription termination factor. It binds to RNA polymerase alpha subunit and promotes termination at certain RNA hairpin structures. It is named for the interaction in Escherichia coli of phage lambda antitermination protein N with the N-utilisation substance, consisting of NusA, NusB, NusE (ribosomal protein S10), and NusG . This entry represents a region of NusA shared by all bacterial forms, and includes the S1 (IPR003029 from INTERPRO) and KH RNA binding domains. Proteobacterial forms have an additional C-terminal region, not included in this entry, with two repeats of 50-residue domain rich in acidic amino acids.; GO: 0003723 RNA binding, 0030528 transcription regulator activity.
Probab=49.67 E-value=17 Score=15.88 Aligned_cols=118 Identities=18% Similarity=0.278 Sum_probs=77.9
Q ss_pred CCCCCHHHHH-HHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEECCCHHHHHCCCCCCHHHH
Q ss_conf 3344114678-999874013443200000135220124789886332210111002000011120123214368898999
Q gi|255764472|r 309 RHTAYEYRQI-IDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVK 387 (469)
Q Consensus 309 ~~~~e~~~~~-i~~~r~~~p~~~i~tdiIvGfPgETeedf~~Tl~~i~~~~~~~~~vf~yS~r~gT~Aa~m~~qV~~~vk 387 (469)
.|+.+++++. ++..|+..|++.++--+-.=+| ...|. .+.-...
T Consensus 77 ~~~~dd~leI~L~~A~~~~p~~~iGd~~~~~~~----------------------------------~~~Fg-R~a~~~a 121 (366)
T TIGR01953 77 DYSLDDMLEISLEDAREIDPDVQIGDEVKKEIN----------------------------------PENFG-RIAAQAA 121 (366)
T ss_pred CCCCHHHEECCHHHHHHCCCCCCCCCEEEEECC----------------------------------CCCCC-HHHHHHH
T ss_conf 535114135220785210779621537887427----------------------------------66644-7899999
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHCCCEEEEEEEC--CCCCCC---EE--E-EECCCCCE--EEECCCCCCCCCEEEEEEE
Q ss_conf 999-999999999999999998579789999842--568086---89--9-99878628--8973887676888999999
Q gi|255764472|r 388 AER-LLCLQKKLREQQVSFNDACVGQIIEVLIEK--HGKEKG---KL--V-GRSPWLQS--VVLNSKNHNIGDIIKVRIT 456 (469)
Q Consensus 388 ~~R-~~~l~~~~~~~~~~~~~~~iG~~~~Vlve~--~~~~~~---~~--~-G~t~~~~~--V~~~~~~~~~G~~v~V~I~ 456 (469)
+++ .+.++++..+..+...+..+|+.+..-|.+ ...+++ .+ . |.++-+.| -.++++...+|+-+++-|.
T Consensus 122 ~Q~~~Qk~re~e~~~~~~ef~~~~g~~i~g~V~r~d~~~~~~~~g~~v~l~g~~e~~lp~~e~iP~E~~~~Gd~i~~~~~ 201 (366)
T TIGR01953 122 KQVITQKIREAERERVYDEFKSKVGEIISGTVKRVDVNKEGNETGLIVELAGKTEAILPKKEQIPGEKFRIGDRIKAYVY 201 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEEEEEEECCCCCCCEEEEEECCCEEEECCHHHCCCCCCCCCCCEEEEEEE
T ss_conf 99998888999987677664333180899999997525787521079998575025213533788875235888999999
Q ss_pred EEECC
Q ss_conf 83087
Q gi|255764472|r 457 DVKIS 461 (469)
Q Consensus 457 ~~~~~ 461 (469)
++...
T Consensus 202 eV~~~ 206 (366)
T TIGR01953 202 EVRKT 206 (366)
T ss_pred EEEEC
T ss_conf 99986
No 189
>TIGR01169 rplA_bact ribosomal protein L1; InterPro: IPR005878 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites , . About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many of ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome , . Ribosomal protein L1 is the largest protein from the large ribosomal subunit. In Escherichia coli, L1 is known to bind to the 23S rRNA. This model describe s bacterial and chloroplast ribosomal protein L1. Most mitochondrial L1 sequences are sufficiently divergent to be the contained in a different entry (IPR005879 from INTERPRO).; GO: 0003723 RNA binding, 0003735 structural constituent of ribosome, 0006412 translation, 0015934 large ribosomal subunit.
Probab=49.51 E-value=18 Score=15.87 Aligned_cols=72 Identities=18% Similarity=0.373 Sum_probs=48.6
Q ss_pred CCHHHHHHHCCCCCCCCCCCCCCCC--CCCCHHHHHHCCCC--CCCCC-------EEEEE--ECCCHHHHHHHCCCCCCC
Q ss_conf 0216788620444300135442100--01000366520221--11220-------13321--114578998730333441
Q gi|255764472|r 247 FSDLLYSLSEIKGLVRLRYTTSHPR--DMSDCLIKAHGDLD--VLMPY-------LHLPV--QSGSDRILKSMNRRHTAY 313 (469)
Q Consensus 247 l~~Ll~~l~~i~~~~riR~~s~~P~--~~~~~li~~~~~~~--~i~~~-------lhlpi--QSgs~~vLk~M~R~~~~e 313 (469)
=+|+++.+.++.-+-==|=+|++|. .+|.++.+++++.+ ++ .| +|+|| =|-++.-|+ |
T Consensus 115 TPDmM~~VGkLG~iLGPRGLMPNPK~GTVT~dva~Av~~~K~G~v-efR~DK~G~iH~~~GK~SF~~~~L~--------e 185 (227)
T TIGR01169 115 TPDMMRKVGKLGRILGPRGLMPNPKTGTVTADVAKAVKEAKKGRV-EFRADKAGNIHAPIGKVSFDEEKLK--------E 185 (227)
T ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCE-EEEECCCEEEEEEECCCCCCHHHHH--------H
T ss_conf 757768876331004788847535966522437999998727950-4651585158777526668889999--------9
Q ss_pred HHHHHHHHHHHHCC
Q ss_conf 14678999874013
Q gi|255764472|r 314 EYRQIIDRIRSVRP 327 (469)
Q Consensus 314 ~~~~~i~~~r~~~p 327 (469)
.+..+++.+.++.|
T Consensus 186 N~~Al~~~i~k~KP 199 (227)
T TIGR01169 186 NLEALLDAIKKAKP 199 (227)
T ss_pred HHHHHHHHHHHHCC
T ss_conf 99999999985088
No 190
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=48.79 E-value=18 Score=15.79 Aligned_cols=76 Identities=18% Similarity=0.236 Sum_probs=42.7
Q ss_pred EEECCCCCCHHHHHHHHHHHHHCCC-EECCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 9957985688789999999998798-687760108899992783250799999999999998767664218981899964
Q gi|255764472|r 29 VKSYGCQMNVYDSLRMEDMFFSQGY-ERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAG 107 (469)
Q Consensus 29 i~TlGC~~N~~Dse~i~~~L~~~G~-~~~~~~~~ADviiINTCsV~~~ae~k~~~~i~~~~~~~~~~~k~~p~~~IvVtG 107 (469)
-=+-||.......-... ....+ ..+.+..+.|++.= .+++..+.|.++. .+.+|++..|+++
T Consensus 27 Hgp~GC~~~~~~~~~~~---~~~~~~~~st~l~E~d~v~G--------g~ekl~~~i~~~~------~~~~p~~I~v~st 89 (399)
T cd00316 27 HGPQGCAYFTRLTLRRH---FKEPIPLFTTSMTEKDVVFG--------GGEKLLEAIINEL------KRYKPKVIFVYTT 89 (399)
T ss_pred ECCCHHHCHHHHHHHCC---CCCCCCCCCCCCCCCCEECC--------CHHHHHHHHHHHH------HHCCCCEEEEECC
T ss_conf 78825533067775212---26898865253342221168--------7899999999998------7439988999657
Q ss_pred CCCCCCHHHHHHHH
Q ss_conf 73010878898741
Q gi|255764472|r 108 CVAQAEGEEILRRS 121 (469)
Q Consensus 108 C~aq~~~e~l~~~~ 121 (469)
|.++.-++++....
T Consensus 90 c~~~iiGdDi~~v~ 103 (399)
T cd00316 90 CTTELIGDDIEAVA 103 (399)
T ss_pred CCHHHHCCCHHHHH
T ss_conf 71886377799999
No 191
>PRK13134 consensus
Probab=48.75 E-value=18 Score=15.78 Aligned_cols=32 Identities=19% Similarity=0.211 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHH
Q ss_conf 1467899987401344320000013522012478988
Q gi|255764472|r 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350 (469)
Q Consensus 314 ~~~~~i~~~r~~~p~~~i~tdiIvGfPgETeedf~~T 350 (469)
++.+.++++|+.. ..-+.|||==-|.|+.++.
T Consensus 193 ~~~~~i~~ik~~t-----~~Pv~vGFGIs~~e~v~~~ 224 (257)
T PRK13134 193 EVADTLARARQCF-----SIPVALGFGISRPAQLEGL 224 (257)
T ss_pred HHHHHHHHHHHHC-----CCCEEEECCCCCHHHHHHH
T ss_conf 8999999999706-----9987998067999999999
No 192
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=48.65 E-value=17 Score=15.96 Aligned_cols=18 Identities=22% Similarity=0.409 Sum_probs=9.6
Q ss_pred HHHHHHCCCCEEEEECCC
Q ss_conf 876310133105873145
Q gi|255764472|r 214 ARKLIDNGVCEITLLGQN 231 (469)
Q Consensus 214 i~~l~~~G~kEi~L~g~d 231 (469)
++...+.|+.=|-|.|-|
T Consensus 160 A~rA~~AGfDGVEIH~ah 177 (336)
T cd02932 160 ARRAVEAGFDVIEIHAAH 177 (336)
T ss_pred HHHHHHCCCCEEEECCCC
T ss_conf 999998399999863137
No 193
>PRK13121 consensus
Probab=48.36 E-value=18 Score=15.74 Aligned_cols=35 Identities=23% Similarity=0.119 Sum_probs=19.8
Q ss_pred CHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 1146789998740134432000001352201247898863
Q gi|255764472|r 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352 (469)
Q Consensus 313 e~~~~~i~~~r~~~p~~~i~tdiIvGfPgETeedf~~Tl~ 352 (469)
+++.+.++++|+.. + .-+.|||==-|.|+.++...
T Consensus 191 ~~~~~~i~~ik~~t-~----~Pv~vGFGIs~~e~~~~v~~ 225 (265)
T PRK13121 191 SSVAAKLPAIRSHV-P----LPVGVGFGIRDAATARAVAE 225 (265)
T ss_pred HHHHHHHHHHHHCC-C----CCEEEECCCCCHHHHHHHHH
T ss_conf 88999999998547-9----98599768898999999981
No 194
>pfam04481 DUF561 Protein of unknown function (DUF561). Protein of unknown function found in a cyanobacterium, and the chloroplasts of algae.
Probab=48.02 E-value=18 Score=15.70 Aligned_cols=80 Identities=15% Similarity=0.135 Sum_probs=48.9
Q ss_pred CCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 00216788620444300135442100010003665202211122013321114578998730333441146789998740
Q gi|255764472|r 246 TFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 (469)
Q Consensus 246 ~l~~Ll~~l~~i~~~~riR~~s~~P~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~~~r~~ 325 (469)
.|.++.+.+..+| +.+++.+|..+. +..+.-..+ ++=|+=.-+-.-+|.+..++++++.++.|+.
T Consensus 51 ~LV~~v~~~~~lP----iCVSaVep~~f~----~aV~AGA~l-------vEIGNfDsFY~qGr~f~a~eVL~Lt~~Tr~L 115 (243)
T pfam04481 51 QLVKVVKSVSNIP----ICVSAVEPELLY----EAVLAGADL-------VEIGNFDSFYKQGRVLSVCEIIALVKETRKL 115 (243)
T ss_pred HHHHHHHHHCCCC----EEEECCCHHHHH----HHHHHCCCE-------EEECCHHHHHHCCCEECHHHHHHHHHHHHHH
T ss_conf 9999999728998----586047978889----999827878-------9864536476547664499999999999976
Q ss_pred CCCCCCCEEEECCCC
Q ss_conf 134432000001352
Q gi|255764472|r 326 RPDIAISSDFIVGFP 340 (469)
Q Consensus 326 ~p~~~i~tdiIvGfP 340 (469)
.|++.++.++=.-.|
T Consensus 116 LP~~~LsVTVPHiL~ 130 (243)
T pfam04481 116 LPHTPLCVTIPHILK 130 (243)
T ss_pred CCCCCEEEECCCCCC
T ss_conf 899844774576356
No 195
>PRK13132 consensus
Probab=47.84 E-value=15 Score=16.47 Aligned_cols=15 Identities=27% Similarity=0.488 Sum_probs=6.5
Q ss_pred EECCCCCCHHHHHHH
Q ss_conf 001352201247898
Q gi|255764472|r 335 FIVGFPGETDDDFRA 349 (469)
Q Consensus 335 iIvGfPgETeedf~~ 349 (469)
+.|||==-|.||.++
T Consensus 198 v~vGFGI~~~e~v~~ 212 (246)
T PRK13132 198 VAVGFGIKNNQDVKR 212 (246)
T ss_pred EEEECCCCCHHHHHH
T ss_conf 699779899999999
No 196
>PRK08318 dihydropyrimidine dehydrogenase; Validated
Probab=47.51 E-value=19 Score=15.65 Aligned_cols=22 Identities=18% Similarity=0.409 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 5889998876310133105873
Q gi|255764472|r 207 LSQVVDEARKLIDNGVCEITLL 228 (469)
Q Consensus 207 ~~~Iv~ei~~l~~~G~kEi~L~ 228 (469)
+.+|.+-++.+.+.|+.=|+++
T Consensus 179 vtdi~~iA~aa~~aGADgv~li 200 (413)
T PRK08318 179 ITDIREPARAAKRGGADAVSLI 200 (413)
T ss_pred CCCHHHHHHHHHHCCCCEEEEE
T ss_conf 7528999999997699889998
No 197
>TIGR03559 F420_Rv3520c probable F420-dependent oxidoreductase, Rv3520c family. Members of this protein family are predicted to be oxidoreductases dependent on coenzyme F420. The family includes a single member in Mycobacterium tuberculosis (Rv3520c/MT3621) but four in Mycobacterium smegmatis. Prediction that this family is F420-dependent is based primarily on Partial Phylogenetic Profiling vs. F420 biosynthesis.
Probab=47.36 E-value=16 Score=16.16 Aligned_cols=21 Identities=10% Similarity=0.048 Sum_probs=11.0
Q ss_pred CCHHHHHHHHHHHHHCCCEEC
Q ss_conf 688789999999998798687
Q gi|255764472|r 36 MNVYDSLRMEDMFFSQGYERV 56 (469)
Q Consensus 36 ~N~~Dse~i~~~L~~~G~~~~ 56 (469)
.--.|.--+.....+.||..+
T Consensus 10 ~p~~~~~e~a~~AE~~Gfd~~ 30 (325)
T TIGR03559 10 GPPRNAVDLVAAAEKAGLDSV 30 (325)
T ss_pred CCHHHHHHHHHHHHHCCCCEE
T ss_conf 998999999999998699989
No 198
>COG1647 Esterase/lipase [General function prediction only]
Probab=47.22 E-value=11 Score=17.25 Aligned_cols=27 Identities=30% Similarity=0.434 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 588999887631013310587314541
Q gi|255764472|r 207 LSQVVDEARKLIDNGVCEITLLGQNVN 233 (469)
Q Consensus 207 ~~~Iv~ei~~l~~~G~kEi~L~g~d~~ 233 (469)
.+++.+.-+.|.++||-||..+|.-+|
T Consensus 69 ~~~v~d~Y~~L~~~gy~eI~v~GlSmG 95 (243)
T COG1647 69 WEDVEDGYRDLKEAGYDEIAVVGLSMG 95 (243)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEECCH
T ss_conf 999999999998757985899851203
No 199
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase; InterPro: IPR010032 This entry identifies a family of bacterial oxidoreductases with covalently linked FAD, closely related to two different eukaryotic oxidases, L-gulonolactone oxidase (1.1.3.8 from EC) from rat and D-arabinono-1,4-lactone oxidase (1.1.3.37 from EC) from Saccharomyces cerevisiae..
Probab=46.80 E-value=16 Score=16.10 Aligned_cols=149 Identities=17% Similarity=0.252 Sum_probs=84.9
Q ss_pred CCCCCHHHH--HHHHHHHHHHHHHHHHHHHHHC-CCCEEEEE-----CCCCCE------------EEECCCC--CCCCCC
Q ss_conf 811100122--1376410058899988763101-33105873-----145411------------3411344--431000
Q gi|255764472|r 190 CTFCVVPYT--RGIEISRSLSQVVDEARKLIDN-GVCEITLL-----GQNVNA------------WRGKGLD--GEKCTF 247 (469)
Q Consensus 190 CsfC~ip~~--RG~~rSr~~~~Iv~ei~~l~~~-G~kEi~L~-----g~d~~~------------Y~g~~~~--~~~~~l 247 (469)
-+-=.+|.. |=+-.-+|+++.++.++..+.+ -.-|+..+ +++.+. + +.+-+ .....|
T Consensus 171 Vtl~t~a~~rLrRr~w~~p~~~~l~~~d~~~~~hr~fEFy~~Pf~g~A~~it~d~sde~~~~tPGr-~~d~de~fln~~L 249 (426)
T TIGR01679 171 VTLRTVALFRLRRRKWLRPLEEALEKLDEFVDAHRSFEFYVVPFAGKALTITSDESDEAAKATPGR-QRDDDEEFLNRAL 249 (426)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHCCCCCCCCCCCCCC-CCCCCCHHHHHHH
T ss_conf 110125452000277755699999999888742577206861442103553113667888888878-8766520357889
Q ss_pred CHHHHHHHCCCCCC----CCCCCCCCCCCCCCHHHHHHCCCCCCCCC----EEEEEECCCHHHHHHHCCCCCCCHHHHHH
Q ss_conf 21678862044430----01354421000100036652022111220----13321114578998730333441146789
Q gi|255764472|r 248 SDLLYSLSEIKGLV----RLRYTTSHPRDMSDCLIKAHGDLDVLMPY----LHLPVQSGSDRILKSMNRRHTAYEYRQII 319 (469)
Q Consensus 248 ~~Ll~~l~~i~~~~----riR~~s~~P~~~~~~li~~~~~~~~i~~~----lhlpiQSgs~~vLk~M~R~~~~e~~~~~i 319 (469)
..|+..+.-.+.+. +.-++++.|...-|+-+++++...+ .+| +|||+|-|-.. ..+++
T Consensus 250 r~lr~~l~~~pslr~rl~~~~~~~~~se~~vd~~~kv~at~R~-vrFnEMEyhlP~Eng~kA-------------L~evi 315 (426)
T TIGR01679 250 RLLRQTLAFLPSLRKRLAKALVAKVKSEDVVDEAYKVFATERK-VRFNEMEYHLPVENGRKA-------------LEEVI 315 (426)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCC-CCCCCCCEECCCCCCHHH-------------HHHHH
T ss_conf 9998631025708999999987507851145534664312687-332300000786454789-------------99999
Q ss_pred HHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEECCC
Q ss_conf 99874013443200000135220124789886332210111002000011120
Q gi|255764472|r 320 DRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372 (469)
Q Consensus 320 ~~~r~~~p~~~i~tdiIvGfPgETeedf~~Tl~~i~~~~~~~~~vf~yS~r~g 372 (469)
+.+++..|++.| |=| ++.+-+|....++|+.||-
T Consensus 316 ~l~e~r~p~v~F--------PiE-----------VR~~ApDd~wLSpfY~rpt 349 (426)
T TIGR01679 316 ELVEKRSPEVYF--------PIE-----------VRSVAPDDAWLSPFYARPT 349 (426)
T ss_pred HHHHHCCCCCCC--------CEE-----------EEEECCCCCCCCCCCCCCC
T ss_conf 998533887215--------502-----------3001577321362437695
No 200
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=46.13 E-value=20 Score=15.50 Aligned_cols=104 Identities=21% Similarity=0.322 Sum_probs=58.6
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHCCCEECCC-----C---------CCCCEEEEECCCCCHHHHHHHHHHHHHHHH
Q ss_conf 60799995798568878999999999879868776-----0---------108899992783250799999999999998
Q gi|255764472|r 24 PQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNS-----M---------DDADLIVLNTCHIREKAAEKVYSFLGRIRN 89 (469)
Q Consensus 24 ~kkv~i~TlGC~~N~~Dse~i~~~L~~~G~~~~~~-----~---------~~ADviiINTCsV~~~ae~k~~~~i~~~~~ 89 (469)
.-||-+-++|=----.-...+.+.|+..||+.... + +++|+++| |+--..-..-+-+.+..+++
T Consensus 12 rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~v~aA~~~dv~vIgv--Ssl~g~h~~l~~~lve~lre 89 (143)
T COG2185 12 RPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEEAVRAAVEEDVDVIGV--SSLDGGHLTLVPGLVEALRE 89 (143)
T ss_pred CCEEEEECCCCCCCCCCHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCCEEEE--EECCCHHHHHHHHHHHHHHH
T ss_conf 8669995367654431319999999857937981587589999999998647988999--73440478999999999998
Q ss_pred HHHHHHHCCCCCEE-EEECCCCCCCHHHHHHHHCCCCCCCCCHHHCCHHHHH
Q ss_conf 76766421898189-9964730108788987410011001100111316888
Q gi|255764472|r 90 LKNSRIKEGGDLLV-VVAGCVAQAEGEEILRRSPIVNVVVGPQTYYRLPELL 140 (469)
Q Consensus 90 ~~~~~~k~~p~~~I-vVtGC~aq~~~e~l~~~~p~vd~vig~~~~~~i~~~i 140 (469)
...+..+ +++|-.|.-.-.++.+ + ++|.+++++. .+.+.+
T Consensus 90 -------~G~~~i~v~~GGvip~~d~~~l~~-~-G~~~if~pgt--~~~~~~ 130 (143)
T COG2185 90 -------AGVEDILVVVGGVIPPGDYQELKE-M-GVDRIFGPGT--PIEEAL 130 (143)
T ss_pred -------HCCCCEEEEECCCCCCHHHHHHHH-H-CCCEEECCCC--CHHHHH
T ss_conf -------197554886568668136799998-1-8665468999--899999
No 201
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=46.10 E-value=18 Score=15.74 Aligned_cols=40 Identities=13% Similarity=0.079 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHH
Q ss_conf 799999999999998767664218981899964730108788987
Q gi|255764472|r 75 KAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILR 119 (469)
Q Consensus 75 ~ae~k~~~~i~~~~~~~~~~~k~~p~~~IvVtGC~aq~~~e~l~~ 119 (469)
-.+++..+.|..+.+. -..|.+..|++.|+++.-++++..
T Consensus 70 GG~~kL~~~I~~~~~~-----yP~~k~I~V~tTC~seiIGDDi~~ 109 (415)
T cd01977 70 GGEKKLKKNIIEAFKE-----FPDIKRMTVYTTCTTALIGDDIKA 109 (415)
T ss_pred CHHHHHHHHHHHHHHH-----CCCCCEEEEECCCHHHHHCCCHHH
T ss_conf 7499999999999985-----799656999767708876468999
No 202
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=44.72 E-value=21 Score=15.35 Aligned_cols=27 Identities=15% Similarity=0.256 Sum_probs=14.3
Q ss_pred CCCHHHHHHHHHHHHCCCCCCCEEEECCC
Q ss_conf 44114678999874013443200000135
Q gi|255764472|r 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGF 339 (469)
Q Consensus 311 ~~e~~~~~i~~~r~~~p~~~i~tdiIvGf 339 (469)
+.....++++.+|+.- ..=..-+|||=
T Consensus 146 ~~~~~~~~i~~lr~~~--~~~~v~i~vGG 172 (201)
T cd02070 146 TMGGMKEVIEALKEAG--LRDKVKVMVGG 172 (201)
T ss_pred CHHHHHHHHHHHHHCC--CCCCCEEEEEC
T ss_conf 8999999999999728--98898599988
No 203
>PRK13113 consensus
Probab=44.31 E-value=15 Score=16.39 Aligned_cols=36 Identities=22% Similarity=0.280 Sum_probs=19.8
Q ss_pred CHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHH
Q ss_conf 11467899987401344320000013522012478988633
Q gi|255764472|r 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353 (469)
Q Consensus 313 e~~~~~i~~~r~~~p~~~i~tdiIvGfPgETeedf~~Tl~~ 353 (469)
.++.+.+.++|+.. .+-+.|||==-|.|+.++...+
T Consensus 191 ~~~~~~i~~ik~~t-----~~Pv~vGFGI~~~e~~~~~~~~ 226 (263)
T PRK13113 191 ADVAPEVARIKAAT-----DLPVIVGFGITTPEAAQAIAGV 226 (263)
T ss_pred HHHHHHHHHHHHCC-----CCCEEEECCCCCHHHHHHHHCC
T ss_conf 77999999998547-----9988998378998999999733
No 204
>PRK12327 nusA transcription elongation factor NusA; Provisional
Probab=44.19 E-value=21 Score=15.29 Aligned_cols=14 Identities=21% Similarity=0.221 Sum_probs=6.5
Q ss_pred HHHCCCEEEEEEEC
Q ss_conf 98579789999842
Q gi|255764472|r 407 DACVGQIIEVLIEK 420 (469)
Q Consensus 407 ~~~iG~~~~Vlve~ 420 (469)
.+..||..+++-++
T Consensus 329 s~Ltgw~IdI~s~~ 342 (353)
T PRK12327 329 AKLTGWKIDIKSES 342 (353)
T ss_pred HHHHCCEEEEEEHH
T ss_conf 99779979985688
No 205
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=43.98 E-value=21 Score=15.27 Aligned_cols=85 Identities=14% Similarity=0.206 Sum_probs=40.8
Q ss_pred CHHHHHHHHHHHHCCCCCCCEEEECCC-CCCHHHHHHHHHHHHHHHHHHHCCCH-HEEECCCHHHHHC---CCCCCHHHH
Q ss_conf 114678999874013443200000135-22012478988633221011100200-0011120123214---368898999
Q gi|255764472|r 313 YEYRQIIDRIRSVRPDIAISSDFIVGF-PGETDDDFRATMDLVDKIGYAQAFSF-KYSPRLGTPGSNM---LEQVDENVK 387 (469)
Q Consensus 313 e~~~~~i~~~r~~~p~~~i~tdiIvGf-PgETeedf~~Tl~~i~~~~~~~~~vf-~yS~r~gT~Aa~m---~~qV~~~vk 387 (469)
+...+++..+++......-..-+++-. |..|+++..+.++.+.+..+|-+-+. .-..|+++..... .+-++..-.
T Consensus 183 ~~l~~ll~~v~~~~~~~~~~~Pi~vKlsPD~~~~~i~~i~~~~~~~g~dGvi~tNTt~~r~~~~~~~~~~~~GGlSG~pl 262 (327)
T cd04738 183 EALRELLTAVKEERNKLGKKVPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAPL 262 (327)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 99999999999999853778866998179976678999999999739978999588555421245655566686364067
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999999
Q gi|255764472|r 388 AERLLCLQKK 397 (469)
Q Consensus 388 ~~R~~~l~~~ 397 (469)
++++.++...
T Consensus 263 ~~~s~~~v~~ 272 (327)
T cd04738 263 KERSTEVLRE 272 (327)
T ss_pred HHHHHHHHHH
T ss_conf 8999999999
No 206
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=43.71 E-value=21 Score=15.24 Aligned_cols=87 Identities=16% Similarity=0.098 Sum_probs=51.4
Q ss_pred CCCCHHHHHHHHHHHH--CCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHH----------HCCCHHEEECCCHHHHH
Q ss_conf 3441146789998740--13443200000135220124789886332210111----------00200001112012321
Q gi|255764472|r 310 HTAYEYRQIIDRIRSV--RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA----------QAFSFKYSPRLGTPGSN 377 (469)
Q Consensus 310 ~~~e~~~~~i~~~r~~--~p~~~i~tdiIvGfPgETeedf~~Tl~~i~~~~~~----------~~~vf~yS~r~gT~Aa~ 377 (469)
|+.++....++.+-.. .|-+.++. |=+.+.|.++++|..+..-. |...+.-.+.+|-.+..
T Consensus 225 yt~~ea~~~fk~~~~a~~~Pwv~LSA-------GV~~~~F~~~l~~A~~aGasf~G~L~GRA~W~d~i~~~~~~g~~~~~ 297 (326)
T PRK04161 225 YSQEEAIKAFKDQEAATHLPYIYLSA-------GVSAKLFQETLYFAAEAGAQFNGVLCGRATWAGSVPVYITKGEEAAR 297 (326)
T ss_pred CCHHHHHHHHHHHHHCCCCCEEEECC-------CCCHHHHHHHHHHHHHCCCCCCCEEECHHHHHHHHHHHCCCCHHHHH
T ss_conf 36999999999987353999799839-------99989999999999986998456765368777677641132689999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 43688989999999999999999999999
Q gi|255764472|r 378 MLEQVDENVKAERLLCLQKKLREQQVSFN 406 (469)
Q Consensus 378 m~~qV~~~vk~~R~~~l~~~~~~~~~~~~ 406 (469)
+ -=..+-.+|.++|.++..+....+.
T Consensus 298 --~-wL~t~g~~~i~~Ln~vl~~tA~pW~ 323 (326)
T PRK04161 298 --K-WLCTEGFQNIDELNRVLEETASPWT 323 (326)
T ss_pred --H-HHHHHHHHHHHHHHHHHHCCCCCCH
T ss_conf --9-9999879999999999982687603
No 207
>PRK10508 hypothetical protein; Provisional
Probab=43.59 E-value=21 Score=15.23 Aligned_cols=24 Identities=13% Similarity=0.308 Sum_probs=13.5
Q ss_pred CCCCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 134432000001352201247898863
Q gi|255764472|r 326 RPDIAISSDFIVGFPGETDDDFRATMD 352 (469)
Q Consensus 326 ~p~~~i~tdiIvGfPgETeedf~~Tl~ 352 (469)
-|.+.+...+|| .||+|+.++...
T Consensus 217 ~P~~ilav~Vi~---AdT~eeA~~la~ 240 (333)
T PRK10508 217 KPYAMVCINIIA---ADSNRDAEFLFT 240 (333)
T ss_pred CCEEEEEEEEEE---CCCHHHHHHHHH
T ss_conf 982899988875---198999999997
No 208
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family; InterPro: IPR005705 This family contains gamma proteobacterial proteins involved in ATP-dependent capsule polysaccharide export , .; GO: 0015542 sugar efflux transmembrane transporter activity, 0006859 extracellular carbohydrate transport, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=43.50 E-value=21 Score=15.22 Aligned_cols=10 Identities=10% Similarity=-0.001 Sum_probs=3.5
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999999
Q gi|255764472|r 394 LQKKLREQQV 403 (469)
Q Consensus 394 l~~~~~~~~~ 403 (469)
|..+.....+
T Consensus 300 ltSLq~tr~E 309 (364)
T TIGR01010 300 LTSLQQTRVE 309 (364)
T ss_pred HHHHHHHHHH
T ss_conf 9989987888
No 209
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=43.00 E-value=22 Score=15.17 Aligned_cols=26 Identities=15% Similarity=0.310 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 64100588999887631013310587
Q gi|255764472|r 202 EISRSLSQVVDEARKLIDNGVCEITL 227 (469)
Q Consensus 202 ~rSr~~~~Iv~ei~~l~~~G~kEi~L 227 (469)
.|.++++.+.++++...+-|++-+++
T Consensus 79 ~r~~s~~~l~~~l~~a~~lG~~~vv~ 104 (279)
T cd00019 79 KREKSIERLKDEIERCEELGIRLLVF 104 (279)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 99999999999999999819988996
No 210
>COG2403 Predicted GTPase [General function prediction only]
Probab=42.98 E-value=22 Score=15.16 Aligned_cols=62 Identities=18% Similarity=0.179 Sum_probs=31.2
Q ss_pred CCCHHHHHHHHHHHHCCCCCCCEE---E-------EC--------CCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEECCC
Q ss_conf 441146789998740134432000---0-------01--------35220124789886332210111002000011120
Q gi|255764472|r 311 TAYEYRQIIDRIRSVRPDIAISSD---F-------IV--------GFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLG 372 (469)
Q Consensus 311 ~~e~~~~~i~~~r~~~p~~~i~td---i-------Iv--------GfPgETeedf~~Tl~~i~~~~~~~~~vf~yS~r~g 372 (469)
..+++.++.+.+++..|++.+... | |- -=|+.|..-.-.....++.-++ ..+--++|||-
T Consensus 282 ~~~kvrkI~~~I~~iNP~A~Vi~~~~~~~~~~~~~ieGKrvlvvedaPt~thgg~~y~agyla~~~~--~~i~~vdPrpy 359 (449)
T COG2403 282 MAEKVRKIVRNIEEINPKAEVILAASVFRPDPPEDIEGKRVLVVEDAPTSTHGGMPYGAGYLAAKKG--GEIVGVDPRPY 359 (449)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHC--CEEEEECCCCC
T ss_conf 3678999999998609984699602421137821056747999934873012651455668888645--60688689855
Q ss_pred HH
Q ss_conf 12
Q gi|255764472|r 373 TP 374 (469)
Q Consensus 373 T~ 374 (469)
+.
T Consensus 360 nr 361 (449)
T COG2403 360 NR 361 (449)
T ss_pred CC
T ss_conf 34
No 211
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=42.94 E-value=22 Score=15.16 Aligned_cols=79 Identities=19% Similarity=0.474 Sum_probs=35.1
Q ss_pred HHHHHHHHCCCCEEEEECCC---------------CCEEEECCCCCCCCCC-CHHHHHHHCCCC-----C--CCCCCCCC
Q ss_conf 98876310133105873145---------------4113411344431000-216788620444-----3--00135442
Q gi|255764472|r 212 DEARKLIDNGVCEITLLGQN---------------VNAWRGKGLDGEKCTF-SDLLYSLSEIKG-----L--VRLRYTTS 268 (469)
Q Consensus 212 ~ei~~l~~~G~kEi~L~g~d---------------~~~Y~g~~~~~~~~~l-~~Ll~~l~~i~~-----~--~riR~~s~ 268 (469)
+-++...+.|+.=|-|.|-+ +-.| |.++.+ +.+| .++++++.+.-| . ..+|++.-
T Consensus 148 ~AA~rA~~AGfDgVEiH~ahGYLl~qFlSp~~N~RtDeY-GGs~eN-R~Rf~~Eii~aIr~~vg~~~~~df~vgvRis~~ 225 (353)
T cd04735 148 EATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEW-GGSLEN-RMRFPLAVVKAVQEVIDKHADKDFILGYRFSPE 225 (353)
T ss_pred HHHHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCC-CCCHHH-HHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHH
T ss_conf 999999983999899754657599985399889984736-798899-988999999999998540058973367515865
Q ss_pred C--CCCCC-CHHHH---HHCCCCCCCCCEEEE
Q ss_conf 1--00010-00366---520221112201332
Q gi|255764472|r 269 H--PRDMS-DCLIK---AHGDLDVLMPYLHLP 294 (469)
Q Consensus 269 ~--P~~~~-~~li~---~~~~~~~i~~~lhlp 294 (469)
+ +..++ ++.++ .+.+.+ .-|+|++
T Consensus 226 e~~~~G~~~~e~~~~~~~l~~~g--vD~l~vs 255 (353)
T cd04735 226 EPEEPGIRMEDTLALVDKLADKG--LDYLHIS 255 (353)
T ss_pred HCCCCCCCHHHHHHHHHHHHHCC--CCEEEEC
T ss_conf 41479999999999999998479--9889960
No 212
>pfam01700 Orbi_VP3 Orbivirus VP3 (T2) protein. The orbivirus VP3 protein is part of the virus core and makes a 'subcore' shell made up of 120 copies of the 100K protein. VP3 particles can also bind RNA and are fundamental in the early stages of viral core formation. Also found in the family is structural core protein VP2 from broadhaven virus which is similar to VP3 in bluetongue virus. Orbivirus are part of the larger reoviridae which have a dsRNA genome of 10-12 linear segments; orbivirus found in this family include bluetongue virus and epizootic hemorrhagic disease virus.
Probab=42.89 E-value=22 Score=15.16 Aligned_cols=26 Identities=27% Similarity=0.454 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 1221376410058899988763101331
Q gi|255764472|r 196 PYTRGIEISRSLSQVVDEARKLIDNGVC 223 (469)
Q Consensus 196 p~~RG~~rSr~~~~Iv~ei~~l~~~G~k 223 (469)
|.+-|.--++|.-+-+ ++.|++.|..
T Consensus 474 p~~~G~~~~yp~~~em--~~~L~aaG~~ 499 (890)
T pfam01700 474 PRTYGSDMTYPLHNEM--LRALVAAGKV 499 (890)
T ss_pred CCCCCCCCCCHHHHHH--HHHHHHHCCH
T ss_conf 6555998653889999--9999983618
No 213
>PRK10712 fructose-specific PTS system IIBC component; Provisional
Probab=42.66 E-value=22 Score=15.13 Aligned_cols=45 Identities=11% Similarity=0.101 Sum_probs=31.5
Q ss_pred ECCCCCCHHHHH----HHHHHHHHCCCEECCCCCCCCEEEEECCCCCHH
Q ss_conf 579856887899----999999987986877601088999927832507
Q gi|255764472|r 31 SYGCQMNVYDSL----RMEDMFFSQGYERVNSMDDADLIVLNTCHIREK 75 (469)
Q Consensus 31 TlGC~~N~~Dse----~i~~~L~~~G~~~~~~~~~ADviiINTCsV~~~ 75 (469)
+--|+.-++-|- .+...-+..||+.++++.+||++++-+-...+.
T Consensus 6 ~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 54 (563)
T PRK10712 6 IIDANLGQARAYMAKTLLGAAARKAKLEIIDNPNDAELAIVLGDSIPND 54 (563)
T ss_pred EECCCCCCHHHHHHHHHHHHHHHHCCCCEECCCCCCCEEEEECCCCCCH
T ss_conf 8349997058999999999999976972444720177899945766755
No 214
>KOG1838 consensus
Probab=42.66 E-value=22 Score=15.13 Aligned_cols=32 Identities=22% Similarity=0.322 Sum_probs=17.1
Q ss_pred EEEECCCCCCHHHHH--HHHHHHHHHHHHHHCCCH
Q ss_conf 000013522012478--988633221011100200
Q gi|255764472|r 333 SDFIVGFPGETDDDF--RATMDLVDKIGYAQAFSF 365 (469)
Q Consensus 333 tdiIvGfPgETeedf--~~Tl~~i~~~~~~~~~vf 365 (469)
|-.+.|||. .+|-+ ..+.+.+++++..-+-+.
T Consensus 296 t~~~~gf~~-~deYY~~aSs~~~v~~I~VP~L~in 329 (409)
T KOG1838 296 TRPMFGFKS-VDEYYKKASSSNYVDKIKVPLLCIN 329 (409)
T ss_pred HHHHCCCCC-HHHHHHHCCHHHHCCCCCCCEEEEE
T ss_conf 324268886-8999860553543455424579985
No 215
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=41.89 E-value=20 Score=15.42 Aligned_cols=28 Identities=25% Similarity=0.311 Sum_probs=13.7
Q ss_pred HHHHHHHHHHCCCCCCCEEEECCCCCCH
Q ss_conf 6789998740134432000001352201
Q gi|255764472|r 316 RQIIDRIRSVRPDIAISSDFIVGFPGET 343 (469)
Q Consensus 316 ~~~i~~~r~~~p~~~i~tdiIvGfPgET 343 (469)
.+.-+.+|+..-|+.=++|++.==|+-+
T Consensus 222 ~n~~eAlre~~~D~~EGAD~lMVKPa~~ 249 (320)
T cd04824 222 GARGLALRAVERDVSEGADMIMVKPGTP 249 (320)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEECCCCH
T ss_conf 8578999998643773999799527622
No 216
>KOG2126 consensus
Probab=41.54 E-value=23 Score=15.01 Aligned_cols=74 Identities=20% Similarity=0.240 Sum_probs=30.0
Q ss_pred CCHHHHHHHHHHHHHCCCEECCCC--CCCCEEEEECCCCCHH-HHHHHHHHHHHHHHHHHHHHHC-CCCCEEEEECCCCC
Q ss_conf 688789999999998798687760--1088999927832507-9999999999999876766421-89818999647301
Q gi|255764472|r 36 MNVYDSLRMEDMFFSQGYERVNSM--DDADLIVLNTCHIREK-AAEKVYSFLGRIRNLKNSRIKE-GGDLLVVVAGCVAQ 111 (469)
Q Consensus 36 ~N~~Dse~i~~~L~~~G~~~~~~~--~~ADviiINTCsV~~~-ae~k~~~~i~~~~~~~~~~~k~-~p~~~IvVtGC~aq 111 (469)
++.+|-+.|...+...- -+|. --|.+.=|..|+=+-. --.+|+..+.++.+.-+.-.+. ..+...+|+|=+..
T Consensus 187 LdtVDn~v~~~if~~l~---s~dwdVlIAHfLGVDH~GHk~GPdH~~M~~KL~qmD~vI~~ii~~mdedTlLvVmGDHGM 263 (895)
T KOG2126 187 LDTVDNGVIEKIFKSLN---SKDWDVLIAHFLGVDHCGHKHGPDHPEMADKLVQMDRVINEIIKKMDEDTLLVVMGDHGM 263 (895)
T ss_pred CCCCCHHHHHHHHHHHC---CCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 54312678998634413---672289999882766566567999989999999999999999997446706998347787
Q ss_pred C
Q ss_conf 0
Q gi|255764472|r 112 A 112 (469)
Q Consensus 112 ~ 112 (469)
.
T Consensus 264 t 264 (895)
T KOG2126 264 T 264 (895)
T ss_pred C
T ss_conf 7
No 217
>pfam01973 MAF_flag10 Protein of unknown function DUF115. This family of archaebacterial proteins has no known function.
Probab=41.45 E-value=16 Score=16.10 Aligned_cols=25 Identities=32% Similarity=0.442 Sum_probs=17.5
Q ss_pred HHHHHH-HHHHHCCCCEEEEECCCCC
Q ss_conf 899988-7631013310587314541
Q gi|255764472|r 209 QVVDEA-RKLIDNGVCEITLLGQNVN 233 (469)
Q Consensus 209 ~Iv~ei-~~l~~~G~kEi~L~g~d~~ 233 (469)
+|..-+ ..+...|+++|.|.|||++
T Consensus 140 sV~~~a~~lA~~lG~~~I~liG~Dl~ 165 (169)
T pfam01973 140 SVANRAVDLAVYLGFKEIILIGQDLA 165 (169)
T ss_pred CHHHHHHHHHHHHCCCEEEEEEECCC
T ss_conf 59999999999819985999976378
No 218
>PRK07534 methionine synthase I; Validated
Probab=41.07 E-value=23 Score=14.96 Aligned_cols=41 Identities=17% Similarity=0.114 Sum_probs=30.9
Q ss_pred CCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHH
Q ss_conf 44114678999874013443200000135220124789886332210
Q gi|255764472|r 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357 (469)
Q Consensus 311 ~~e~~~~~i~~~r~~~p~~~i~tdiIvGfPgETeedf~~Tl~~i~~~ 357 (469)
+++.|.+.+.++.+. +..||=|-.|=|.++....-+-++..
T Consensus 256 tpe~f~~~~~~w~~~------Ga~IIGGCCGttPeHIkai~~av~~~ 296 (335)
T PRK07534 256 TPELMAEYAVLARDA------GARIIGGCCGTMPEHLAAMRAALDAR 296 (335)
T ss_pred CHHHHHHHHHHHHHC------CCCEEEECCCCCHHHHHHHHHHHHCC
T ss_conf 999999999999987------98199888899879999999998269
No 219
>cd02172 RfaE_N RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in Escherichia coli, and separate proteins in other organisms. Domain I is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose .
Probab=40.99 E-value=20 Score=15.42 Aligned_cols=27 Identities=22% Similarity=0.160 Sum_probs=11.4
Q ss_pred CCCCCCCCEEEEEECCCHHHHHHHCCCC
Q ss_conf 2211122013321114578998730333
Q gi|255764472|r 283 DLDVLMPYLHLPVQSGSDRILKSMNRRH 310 (469)
Q Consensus 283 ~~~~i~~~lhlpiQSgs~~vLk~M~R~~ 310 (469)
..+.+|.+|-+++.| +..+.+.-+|+.
T Consensus 26 ~Ak~~gd~LiVgv~s-D~~i~k~k~~Pi 52 (143)
T cd02172 26 AARSLGDILVVGLTS-DRSVLKGPGRPI 52 (143)
T ss_pred HHHHCCCEEEEEEEC-CHHHHCCCCCCE
T ss_conf 999749989999968-988966899874
No 220
>TIGR00692 tdh L-threonine 3-dehydrogenase; InterPro: IPR004627 L-threonine 3-dehydrogenase (1.1.1.103 from EC) is a tetrameric, zinc-binding, NAD-dependent enzyme of threonine catabolism. It catalyses the conversion of L-threonine and NAD+ to L-2-amino-3-oxobutanoate and NADH. In Escherichia coli His-90 modulates substrate specificity and is believed part of the active site. Closely related proteins include sorbitol dehydrogenase, xylitol dehydrogenase, and benzyl alcohol dehydrogenase. Eukaryotic examples of this enzyme have been demonstrated experimentally but are not detected by this HMM. ; GO: 0008270 zinc ion binding, 0008743 L-threonine 3-dehydrogenase activity, 0006567 threonine catabolic process.
Probab=40.43 E-value=22 Score=15.13 Aligned_cols=92 Identities=18% Similarity=0.217 Sum_probs=38.3
Q ss_pred CCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 10002167886204443001354421000100036652022111220133211145789987303334411467899987
Q gi|255764472|r 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIR 323 (469)
Q Consensus 244 ~~~l~~Ll~~l~~i~~~~riR~~s~~P~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~~~r 323 (469)
+..|...|..+.. =-|+.+++++|..++=++ .++-++|-|.| |=--- | +--|.+..+-..|.
T Consensus 241 P~A~~~gL~~~~~---gGR~~~Lglpp~~vtID~-----tNkviFKgLtI--~GItG-------R-~mfeTWy~vs~Liq 302 (341)
T TIGR00692 241 PKALEQGLDAVAN---GGRVALLGLPPSDVTIDL-----TNKVIFKGLTI--KGITG-------R-KMFETWYKVSRLIQ 302 (341)
T ss_pred CHHHHHHHHHHCC---CCEEEECCCCCCCEEEEE-----CCCEEEEEEEE--EEECC-------C-CHHHHHHHHHHHHC
T ss_conf 1799999998506---880898136897612630-----37478864277--20007-------5-04678999999842
Q ss_pred HHCCCCCCCEEEEC-CCCCCHHHHHHHHHHHHHHHH
Q ss_conf 40134432000001-352201247898863322101
Q gi|255764472|r 324 SVRPDIAISSDFIV-GFPGETDDDFRATMDLVDKIG 358 (469)
Q Consensus 324 ~~~p~~~i~tdiIv-GfPgETeedf~~Tl~~i~~~~ 358 (469)
+..-|+. -+|+ =||| =++||+-+++++.=+
T Consensus 303 S~~ldL~---PiITH~f~G--~d~fekgFelMRsGq 333 (341)
T TIGR00692 303 SNKLDLS---PIITHKFKG--LDEFEKGFELMRSGQ 333 (341)
T ss_pred CCCCCCC---CEEECCCCC--CHHHHHHHHHHHCCC
T ss_conf 6883568---455402688--314678888763789
No 221
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=40.41 E-value=24 Score=14.89 Aligned_cols=51 Identities=12% Similarity=0.199 Sum_probs=32.6
Q ss_pred CCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHH
Q ss_conf 7760108899992783250799999999999998767664218981899964730108788987
Q gi|255764472|r 56 VNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILR 119 (469)
Q Consensus 56 ~~~~~~ADviiINTCsV~~~ae~k~~~~i~~~~~~~~~~~k~~p~~~IvVtGC~aq~~~e~l~~ 119 (469)
+.+..|-|+|. -.+++..+.|..+.+. ...|....|+|+|+++.-++++..
T Consensus 58 sT~l~E~~~Vf--------GGe~~L~~aI~~~~~~-----y~~p~~I~V~tTC~~e~iGDDi~~ 108 (454)
T cd01973 58 SSSLHEDSAVF--------GGAKRVEEGVLVLARR-----YPDLRVIPIITTCSTEIIGDDIEG 108 (454)
T ss_pred CCCCCCCCEEE--------CCHHHHHHHHHHHHHH-----CCCCCEEEEECCCHHHHCCCCHHH
T ss_conf 67898785588--------8299999999999984-----899657999767638750675899
No 222
>CHL00023 ndhK NADH dehydrogenase subunit K
Probab=40.41 E-value=24 Score=14.89 Aligned_cols=66 Identities=18% Similarity=0.216 Sum_probs=33.9
Q ss_pred CCCCHHHHHHHHHHHHHCCCEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 8568878999999999879868776010889999278325079999999999999876766421898189996473
Q gi|255764472|r 34 CQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCV 109 (469)
Q Consensus 34 C~~N~~Dse~i~~~L~~~G~~~~~~~~~ADviiINTCsV~~~ae~k~~~~i~~~~~~~~~~~k~~p~~~IvVtGC~ 109 (469)
|..-..-+..=+-.+..-|.....+|..||+++|. =+||.+ +...++++-+ . -..|.-.|.++.|.
T Consensus 44 C~IEmma~~~~ryD~eRFG~~~raSPRqADlliVt-GtVT~k----Ma~~l~r~Ye---Q--MPePK~VIAmGaCA 109 (225)
T CHL00023 44 CFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTA-GTVTMK----MAPSLVRLYE---Q--MPEPKYVIAMGACT 109 (225)
T ss_pred HHHHHHHHCCCCCCHHHCCCEECCCCCCCCEEEEE-CCCCHH----HHHHHHHHHH---H--CCCCCEEEEECCCC
T ss_conf 89889862266424544110123897502379980-316186----7999999998---5--79985699856645
No 223
>COG2517 Predicted RNA-binding protein containing a C-terminal EMAP domain [General function prediction only]
Probab=40.33 E-value=8.8 Score=18.12 Aligned_cols=36 Identities=19% Similarity=0.310 Sum_probs=22.9
Q ss_pred CCCCCHHHHHHHCCCCCCCCCCCCCCCCCCC--CHHHHHH
Q ss_conf 1000216788620444300135442100010--0036652
Q gi|255764472|r 244 KCTFSDLLYSLSEIKGLVRLRYTTSHPRDMS--DCLIKAH 281 (469)
Q Consensus 244 ~~~l~~Ll~~l~~i~~~~riR~~s~~P~~~~--~~li~~~ 281 (469)
+..+.++++.+.. .+.-+|++|+.|.++. +.+.++.
T Consensus 34 rk~~ie~lksi~s--~lQ~lrY~Yl~peel~~~e~~~~l~ 71 (219)
T COG2517 34 RKRAIEALKSIES--ELQALRYSYLEPEELVDTEQMKDLK 71 (219)
T ss_pred HHHHHHHHHHHHH--HHHHHEEECCCHHHHCCCHHHHHHH
T ss_conf 8889999998899--9875203214878841529899988
No 224
>TIGR02885 spore_sigF RNA polymerase sigma-F factor; InterPro: IPR014236 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme . RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognized by the major sigma factors , . Members of this entry represent RNA polymerase sigma factor F. Within the Firmicutes, Sigma-F is specifically, and universally, a component of the endospore formation program, and is expressed in the forespore to turn on the expression of dozens of genes. It is closely related to sigma-G, which is also expressed in the forespore.; GO: 0003677 DNA binding, 0003700 transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, 0006355 regulation of transcription DNA-dependent.
Probab=40.18 E-value=22 Score=15.11 Aligned_cols=141 Identities=15% Similarity=0.223 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCCCHHHHHHHCCCCCCCCCCCC-CCCCCC------
Q ss_conf 7641005889998876310133105873145411341134443100021678862044430013544-210001------
Q gi|255764472|r 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT-SHPRDM------ 273 (469)
Q Consensus 201 ~~rSr~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y~g~~~~~~~~~l~~Ll~~l~~i~~~~riR~~s-~~P~~~------ 273 (469)
++......=|-.=++.+..+|| .-.|+. ...=..|++++.+.+.-+-++||+ .=|.=|
T Consensus 15 kLi~~N~~LV~siv~rF~nRGY-------------e~eDlF--QIGciGLvKAidkFD~~y~VKFSTYAVPmI~GEIkRF 79 (231)
T TIGR02885 15 KLIEENLRLVSSIVKRFLNRGY-------------EYEDLF--QIGCIGLVKAIDKFDLSYDVKFSTYAVPMIMGEIKRF 79 (231)
T ss_pred HHHHHCCHHHHHHHHHHHCCCC-------------CCCHHH--HHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHH
T ss_conf 9987233468999998520688-------------700002--2211556665542176777015521222022122231
Q ss_pred --CCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHH
Q ss_conf --000366520221112201332111457899873033344114678999874013443200000135220124789886
Q gi|255764472|r 274 --SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATM 351 (469)
Q Consensus 274 --~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~~~r~~~p~~~i~tdiIvGfPgETeedf~~Tl 351 (469)
||..|..=.+.+.+..-+| ---+...+.|||..|.++..+....- .|+.-.-+
T Consensus 80 LRDDG~ikVSRSlK~la~k~~----~~kE~L~~~l~R~PTi~Elae~lg~~---------------------~EEiv~A~ 134 (231)
T TIGR02885 80 LRDDGIIKVSRSLKELARKIR----YEKEELTKKLGREPTINELAEALGVS---------------------PEEIVMAL 134 (231)
T ss_pred HCCCCCEEEEHHHHHHHHHHH----HHHHHHHHHHCCCCCHHHHHHHHCCC---------------------HHHHHHHH
T ss_conf 026885575152789999998----77999999838998889998875878---------------------87866442
Q ss_pred HHHHHHHHHHCCCHHEEECCCHHHHHCCCCCCHH
Q ss_conf 3322101110020000111201232143688989
Q gi|255764472|r 352 DLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDEN 385 (469)
Q Consensus 352 ~~i~~~~~~~~~vf~yS~r~gT~Aa~m~~qV~~~ 385 (469)
+=... +.++|=.- +.-.|+|=.=+ ||+.++
T Consensus 135 Es~~~--~~sly~tv-h~dDGdPi~Ll-D~i~d~ 164 (231)
T TIGR02885 135 ESARS--LQSLYDTV-HEDDGDPILLL-DQIADK 164 (231)
T ss_pred HCCCC--CCHHCCEE-ECCCCCHHHHH-HHHCCC
T ss_conf 02576--10110011-41794644676-652125
No 225
>KOG1412 consensus
Probab=39.96 E-value=24 Score=14.84 Aligned_cols=58 Identities=17% Similarity=0.245 Sum_probs=33.8
Q ss_pred CCCCCCHHHHHHHCCCCC--CCCCCCCCCCCCCCC------HHHHHHCCCCCCCCCEEEEEE---CCCHH
Q ss_conf 310002167886204443--001354421000100------036652022111220133211---14578
Q gi|255764472|r 243 EKCTFSDLLYSLSEIKGL--VRLRYTTSHPRDMSD------CLIKAHGDLDVLMPYLHLPVQ---SGSDR 301 (469)
Q Consensus 243 ~~~~l~~Ll~~l~~i~~~--~riR~~s~~P~~~~~------~li~~~~~~~~i~~~lhlpiQ---Sgs~~ 301 (469)
....+..+|..|...+.- .-++----+|..||+ .+.+.|+ .+++.++||+.-| ||+..
T Consensus 161 k~~d~e~~Lsdl~~APe~si~iLhaCAhNPTGmDPT~EQW~qia~vik-~k~lf~fFDiAYQGfASGD~~ 229 (410)
T KOG1412 161 KCVDLEGFLSDLESAPEGSIIILHACAHNPTGMDPTREQWKQIADVIK-SKNLFPFFDIAYQGFASGDLD 229 (410)
T ss_pred CEECHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHH-HCCCEEEEEHHHCCCCCCCCC
T ss_conf 121399999898638987378620013698789978899999999997-447603542021012469954
No 226
>PRK13127 consensus
Probab=39.60 E-value=24 Score=14.80 Aligned_cols=25 Identities=12% Similarity=0.108 Sum_probs=10.3
Q ss_pred EEECCCCCCHHHHHHHHHHHHHCCCE
Q ss_conf 99579856887899999999987986
Q gi|255764472|r 29 VKSYGCQMNVYDSLRMEDMFFSQGYE 54 (469)
Q Consensus 29 i~TlGC~~N~~Dse~i~~~L~~~G~~ 54 (469)
+.|.|.+ |.-.|..+...|.+.|-.
T Consensus 16 yitaG~P-~~e~t~~~l~~l~~~GaD 40 (262)
T PRK13127 16 YLVAGDP-DPEATLEFVKALVKGGAD 40 (262)
T ss_pred EECCCCC-CHHHHHHHHHHHHHCCCC
T ss_conf 8627089-989999999999976999
No 227
>TIGR00461 gcvP glycine dehydrogenase; InterPro: IPR003437 This family consists of glycine cleavage system P-proteins (1.4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T . The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0006544 glycine metabolic process, 0005961 glycine dehydrogenase complex (decarboxylating).
Probab=39.25 E-value=5.8 Score=19.48 Aligned_cols=67 Identities=24% Similarity=0.350 Sum_probs=31.0
Q ss_pred CHHHHHH--HCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEC-CCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEEC
Q ss_conf 5789987--30333441146789998740134432000001-352201247898863322101110020000111
Q gi|255764472|r 299 SDRILKS--MNRRHTAYEYRQIIDRIRSVRPDIAISSDFIV-GFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370 (469)
Q Consensus 299 s~~vLk~--M~R~~~~e~~~~~i~~~r~~~p~~~i~tdiIv-GfPgETeedf~~Tl~~i~~~~~~~~~vf~yS~r 370 (469)
+|.+|+. -||.|+--+.++-+..|.++ |+++.+..|= |=.+- -...|.+++==+=|+...+.||.|-
T Consensus 474 ~deiL~~~VFn~yHSETemlRYlH~Lesk--DLaLn~sMIPLGSCTM---KLNataEMmPiTWPeF~~iHPF~P~ 543 (965)
T TIGR00461 474 DDEILRDEVFNRYHSETEMLRYLHRLESK--DLALNNSMIPLGSCTM---KLNATAEMMPITWPEFSEIHPFAPS 543 (965)
T ss_pred CHHHHCCCCCCCCCCHHHHHHHHHHHHHH--HHHHHHCCCCCCCCHH---HHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 11443040002557468999987642013--4767514674442032---2301100267767010565878885
No 228
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=39.22 E-value=25 Score=14.76 Aligned_cols=18 Identities=17% Similarity=0.305 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHCCCEE
Q ss_conf 878999999999879868
Q gi|255764472|r 38 VYDSLRMEDMFFSQGYER 55 (469)
Q Consensus 38 ~~Dse~i~~~L~~~G~~~ 55 (469)
.-++..........||..
T Consensus 15 ~~~~~~Yi~~~~~~Gf~~ 32 (360)
T COG3589 15 KEKDIAYIDRMHKYGFKR 32 (360)
T ss_pred CHHHHHHHHHHHHCCCCC
T ss_conf 166799999998738011
No 229
>TIGR01393 lepA GTP-binding protein LepA; InterPro: IPR006297 LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function of the proteins in this family are unknown. ; GO: 0005525 GTP binding.
Probab=39.00 E-value=25 Score=14.74 Aligned_cols=73 Identities=26% Similarity=0.375 Sum_probs=38.7
Q ss_pred CCCCCHHHHHHHHCCCCCCCCCHHHC----------CHHHHHHHHCCCCEECCCCCCCC-CCCCCCCCCCCCCCCCCCCE
Q ss_conf 30108788987410011001100111----------31688875305970023554411-24443333345756777725
Q gi|255764472|r 109 VAQAEGEEILRRSPIVNVVVGPQTYY----------RLPELLERARFGKRVVDTDYSVE-DKFERLSIVDGGYNRKRGVT 177 (469)
Q Consensus 109 ~aq~~~e~l~~~~p~vd~vig~~~~~----------~i~~~i~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 177 (469)
+|.|.||.+.++..++ +|-...+ .+.++|+... ++++.+.-..+ .++..| +.+..+...++..
T Consensus 135 LP~Adpe~v~~eIe~~---iGld~~~ai~~SAKtG~Gi~e~LEaIv--~~vPpP~Gd~~DapLkAL-IFDS~YD~YrGVv 208 (598)
T TIGR01393 135 LPSADPERVKKEIEEV---IGLDASEAILASAKTGIGIEEILEAIV--KRVPPPKGDPDDAPLKAL-IFDSHYDNYRGVV 208 (598)
T ss_pred CCCCCHHHHHHHHHHH---CCCCCCCCEEEEECCCCCHHHHHHHHH--HCCCCCCCCCCCCCCEEE-EEEEEECCCCEEE
T ss_conf 8888858999987654---188964303875036788899988971--018100113888663227-8843543865089
Q ss_pred EEEEECCCCC
Q ss_conf 7874123324
Q gi|255764472|r 178 AFLTIQEGCD 187 (469)
Q Consensus 178 a~ikI~~GC~ 187 (469)
+||.|-+|=-
T Consensus 209 ~~vRv~~G~i 218 (598)
T TIGR01393 209 VLVRVFEGTI 218 (598)
T ss_pred EEEEEEECEE
T ss_conf 9999952686
No 230
>pfam09370 TIM-br_sig_trns TIM-barrel signal transduction protein. This domain is likely to have a TIM barrel fold related to IGPS. Although this family of proteins are functionally uncharacterized this domain is found as an N-terminal domain of sigma 54 -dependent transcriptional activators (enhancer-binding proteins) suggesting a potential role in signal recognition/receiving and signal transduction.
Probab=38.80 E-value=25 Score=14.72 Aligned_cols=171 Identities=20% Similarity=0.333 Sum_probs=80.0
Q ss_pred EEEECCCCCCCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCC---CHHHHHH
Q ss_conf 87412332446811100-1221376410058899988763101331058731454113411344431000---2167886
Q gi|255764472|r 179 FLTIQEGCDKFCTFCVV-PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTF---SDLLYSL 254 (469)
Q Consensus 179 ~ikI~~GC~~~CsfC~i-p~~RG~~rSr~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y~g~~~~~~~~~l---~~Ll~~l 254 (469)
++++-..-|--|.-|.+ |+ +.++..+++++.+-=.|+..+=-+|-=-+.| ...+.-..-.+ .++++.-
T Consensus 75 vlpvv~~tPViaGv~~tDP~-------~~~~~~L~~l~~~GfsGV~NfPTvglidG~f-R~~LEetGmgy~~EVEmIr~A 146 (268)
T pfam09370 75 VLPVVKHTPVLAGVCGTDPF-------RDMDRFLDELKEMGFAGVQNFPTVGLIDGEF-RQNLEETGMGYDLEVEMIRLA 146 (268)
T ss_pred HHHHCCCCCEEEECCCCCCC-------CCHHHHHHHHHHHCCCCEEECCCEEEECCHH-HHHHHHCCCCHHHHHHHHHHH
T ss_conf 87553588758761588974-------5299999999971977444388220335188-877888088679999999999
Q ss_pred HCCCCCCCCCCCCCCCCCCCCHHHHHHCCC--CCCCCCEEEEEE-CCCHHHHHHHCCCCCCCHHHHHHHHH----HHHCC
Q ss_conf 204443001354421000100036652022--111220133211-14578998730333441146789998----74013
Q gi|255764472|r 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDL--DVLMPYLHLPVQ-SGSDRILKSMNRRHTAYEYRQIIDRI----RSVRP 327 (469)
Q Consensus 255 ~~i~~~~riR~~s~~P~~~~~~li~~~~~~--~~i~~~lhlpiQ-Sgs~~vLk~M~R~~~~e~~~~~i~~~----r~~~p 327 (469)
.+.+ + ++ -|..++++-...|++. +.+|+| +++- .|+--. ....+.++..+.++.+ ++..|
T Consensus 147 ~~~d-l----~T--~~yvf~~e~a~~Ma~AGaDiIv~H--~GlT~gG~iG~----~~a~sl~~a~~~~~~i~~aa~~v~~ 213 (268)
T pfam09370 147 HEKG-L----LT--TPYVFNVEEARAMAEAGADIIVAH--MGLTTGGTIGA----DTALSLDDCVELINAIARAARSVNP 213 (268)
T ss_pred HHCC-C----CC--CCEECCHHHHHHHHHCCCCEEEEC--CCCCCCCCCCC----CCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 9779-8----33--313268999999997499899976--77677767467----7767899999999999999998599
Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEECCCHHHHHCCCCCCHHH
Q ss_conf 44320000013522012478988633221011100200001112012321436889899
Q gi|255764472|r 328 DIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 (469)
Q Consensus 328 ~~~i~tdiIvGfPgETeedf~~Tl~~i~~~~~~~~~vf~yS~r~gT~Aa~m~~qV~~~v 386 (469)
++-+ +..|=|=.|.+|.+.-++-.+.+ |-| | | |++|+ .+|-+.
T Consensus 214 diIv---LchGGpI~~P~Da~~vl~~t~~~-----~Gf-~----G--aSS~E-RlPvE~ 256 (268)
T pfam09370 214 DVIV---LCHGGPIATPEDAQYVLDRTPGC-----HGF-Y----G--ASSME-RLPTER 256 (268)
T ss_pred CEEE---EECCCCCCCHHHHHHHHHCCCCC-----CEE-E----C--CCHHH-HHHHHH
T ss_conf 8699---95178889989999999739777-----667-6----3--30366-646899
No 231
>PRK08356 hypothetical protein; Provisional
Probab=38.71 E-value=25 Score=14.71 Aligned_cols=25 Identities=16% Similarity=0.516 Sum_probs=12.1
Q ss_pred EEEECCCCCCHHHHHHHHH-HHHHHHH
Q ss_conf 0000135220124789886-3322101
Q gi|255764472|r 333 SDFIVGFPGETDDDFRATM-DLVDKIG 358 (469)
Q Consensus 333 tdiIvGfPgETeedf~~Tl-~~i~~~~ 358 (469)
+|+++=--| |-|+|..-+ +++++++
T Consensus 169 ADy~I~N~g-tleel~~~i~~il~~i~ 194 (195)
T PRK08356 169 ADYVIVNEG-TLEELRKKVEEILRELK 194 (195)
T ss_pred CCEEEECCC-CHHHHHHHHHHHHHHHC
T ss_conf 999998299-89999999999999833
No 232
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=38.58 E-value=25 Score=14.69 Aligned_cols=137 Identities=18% Similarity=0.219 Sum_probs=67.6
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHH-CCCCCCCCCHHHCCH
Q ss_conf 6010889999278325079999999999999876766421898189996473010878898741-001100110011131
Q gi|255764472|r 58 SMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRS-PIVNVVVGPQTYYRL 136 (469)
Q Consensus 58 ~~~~ADviiINTCsV~~~ae~k~~~~i~~~~~~~~~~~k~~p~~~IvVtGC~aq~~~e~l~~~~-p~vd~vig~~~~~~i 136 (469)
+.+.||-++.--=|-..+..+-+++.+.+..+ .-...+-|+|-.-+. +.+.+.+ -++|.|.=|..--.=
T Consensus 40 ~e~GADElvFlDItAs~~gr~~~~~vv~~~A~--------~vfiPltVGGGI~s~--eD~~~ll~aGADKVSINsaAv~~ 109 (256)
T COG0107 40 NEEGADELVFLDITASSEGRETMLDVVERVAE--------QVFIPLTVGGGIRSV--EDARKLLRAGADKVSINSAAVKD 109 (256)
T ss_pred HHCCCCEEEEEECCCCCCCCCCHHHHHHHHHH--------HCEEEEEECCCCCCH--HHHHHHHHCCCCEEEECHHHHCC
T ss_conf 77599769998622565666207999999973--------030324754775888--99999997699746528467509
Q ss_pred HHHHHHHC--CCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 68887530--5970023554411244433333457567777257874123324468111001221376410058899988
Q gi|255764472|r 137 PELLERAR--FGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEA 214 (469)
Q Consensus 137 ~~~i~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ikI~~GC~~~CsfC~ip~~RG~~rSr~~~~Iv~ei 214 (469)
|+++.+.. .|...+-.... . + +..+| ..|.|+.. .+|--.+ .--+.++=+
T Consensus 110 p~lI~~~a~~FGsQciVvaID-------------a--k--------r~~~g--~~~~~~v~--~~gGr~~-t~~d~~eWa 161 (256)
T COG0107 110 PELITEAADRFGSQCIVVAID-------------A--K--------RVPDG--ENGWYEVF--THGGRED-TGLDAVEWA 161 (256)
T ss_pred HHHHHHHHHHHCCCEEEEEEE-------------E--E--------ECCCC--CCCCEEEE--ECCCCCC-CCCCHHHHH
T ss_conf 599999999838812999987-------------5--5--------42689--98767999--6689756-885799999
Q ss_pred HHHHHCCCCEEEEECCCC
Q ss_conf 763101331058731454
Q gi|255764472|r 215 RKLIDNGVCEITLLGQNV 232 (469)
Q Consensus 215 ~~l~~~G~kEi~L~g~d~ 232 (469)
+...+.|+-||.||+.|-
T Consensus 162 ~~~e~~GAGEIlLtsmD~ 179 (256)
T COG0107 162 KEVEELGAGEILLTSMDR 179 (256)
T ss_pred HHHHHCCCCEEEEEEECC
T ss_conf 999973885487863556
No 233
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=38.53 E-value=24 Score=14.82 Aligned_cols=35 Identities=23% Similarity=0.422 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 012213764100588999887631013310587314
Q gi|255764472|r 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ 230 (469)
Q Consensus 195 ip~~RG~~rSr~~~~Iv~ei~~l~~~G~kEi~L~g~ 230 (469)
||..-|-+| .+++.+++|++.+++.|++-|.|-|.
T Consensus 42 I~SMPGi~r-~sid~l~~~v~~~~~lGI~av~LFgv 76 (320)
T cd04823 42 IPSMPGVFR-LSIDELLKEAEEAVDLGIPAVALFPV 76 (320)
T ss_pred CCCCCCCCE-ECHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 689998606-58999999999999889978999546
No 234
>KOG2086 consensus
Probab=38.28 E-value=16 Score=16.25 Aligned_cols=59 Identities=24% Similarity=0.410 Sum_probs=40.6
Q ss_pred EEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 13321114578998730333441146789998740134432000001352201247898863
Q gi|255764472|r 291 LHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352 (469)
Q Consensus 291 lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~~~r~~~p~~~i~tdiIvGfPgETeedf~~Tl~ 352 (469)
+.|=+--|.--||+ ||-.||+.+++.+|...|--.+-- ..-++.|||--.-+|..+||+
T Consensus 308 IQIRLanG~RlV~~-fN~sHTv~DIR~fI~~aRp~~~~~--~F~L~~~FPpk~l~D~sqTle 366 (380)
T KOG2086 308 IQIRLANGTRLVLK-FNHSHTVSDIREFIDTARPGDSST--YFILMMAFPPKPLSDDSQTLE 366 (380)
T ss_pred EEEEECCCCEEEEE-CCCCCCHHHHHHHHHHCCCCCCCC--CEEEEECCCCCCCCCCCHHHH
T ss_conf 78993698610211-057554899999998618777677--446640489842577321387
No 235
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=38.13 E-value=26 Score=14.64 Aligned_cols=43 Identities=9% Similarity=0.121 Sum_probs=35.7
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHCCCEECCCCCCCCEEEEEC
Q ss_conf 079999579856887899999999987986877601088999927
Q gi|255764472|r 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNT 69 (469)
Q Consensus 25 kkv~i~TlGC~~N~~Dse~i~~~L~~~G~~~~~~~~~ADviiINT 69 (469)
.|++|..=+=+..+.=.+.+...|.+.||... .++||++|+--
T Consensus 1 mk~~iv~~~~~~s~~~~~~~~~~l~~~~~~~~--~~~~Dlvi~iG 43 (265)
T PRK04885 1 MKVAIISNGDEKSKRVASKLKKYLKDFGFILD--EKNPDIVISVG 43 (265)
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHCCCCCC--CCCCCEEEEEC
T ss_conf 96999969698999999999999987698558--77899999988
No 236
>TIGR00839 aspA aspartate ammonia-lyase; InterPro: IPR004708 A number of enzymes, belonging to the lyase class, for which fumarate is a substrate have been shown , to share a short conserved sequence around a methionine which is probably involved in the catalytic activity of this type of enzymes. Aspartate ammonia-lyase catalyses the conversion of aspartate to fumarate.; GO: 0008797 aspartate ammonia-lyase activity, 0006531 aspartate metabolic process.
Probab=38.03 E-value=26 Score=14.63 Aligned_cols=78 Identities=24% Similarity=0.303 Sum_probs=44.2
Q ss_pred CHHHHHHH-HH--HHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 00122137-64--1005889998876310133105873145411341134443100021678862044430013544210
Q gi|255764472|r 194 VVPYTRGI-EI--SRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHP 270 (469)
Q Consensus 194 ~ip~~RG~-~r--Sr~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y~g~~~~~~~~~l~~Ll~~l~~i~~~~riR~~s~~P 270 (469)
.+|-+=|- ++ |+=+++=+++++.-. +=..|+.|-|+=+ |-|++..+..-.-..++|.++.|. |
T Consensus 190 AVPmtlGQEF~ay~~~l~~di~~~~~~~-~~l~EvNlGaTAi----GTGlN~~~~Y~~lvvK~laevtG~---------p 255 (469)
T TIGR00839 190 AVPMTLGQEFEAYALLLERDIKNIKRTR-QLLLEVNLGATAI----GTGLNTPPEYIKLVVKKLAEVTGL---------P 255 (469)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHCCCCEE----CCCCCCCHHHHHHHHHHHHHCCCC---------C
T ss_conf 3235556048999999999999999998-7787763475102----157787711389998876411688---------6
Q ss_pred CCCCCHHHHHHCCCC
Q ss_conf 001000366520221
Q gi|255764472|r 271 RDMSDCLIKAHGDLD 285 (469)
Q Consensus 271 ~~~~~~li~~~~~~~ 285 (469)
....++||++=.+++
T Consensus 256 ~V~A~~LieAT~~tg 270 (469)
T TIGR00839 256 LVPAENLIEATQDTG 270 (469)
T ss_pred CCCHHHHHHHHCCCC
T ss_conf 425235777533899
No 237
>KOG0434 consensus
Probab=37.86 E-value=26 Score=14.61 Aligned_cols=48 Identities=13% Similarity=0.212 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHCCCCCCCEE---EECCCCCCHHHHHHHHHHHHHHHHHHHCCCH
Q ss_conf 146789998740134432000---0013522012478988633221011100200
Q gi|255764472|r 314 EYRQIIDRIRSVRPDIAISSD---FIVGFPGETDDDFRATMDLVDKIGYAQAFSF 365 (469)
Q Consensus 314 ~~~~~i~~~r~~~p~~~i~td---iIvGfPgETeedf~~Tl~~i~~~~~~~~~vf 365 (469)
.+.++...+|+.. .+.+-|. +||=.+ +++|.+-++.++++-..-+||-
T Consensus 825 siIdl~R~iRern-~islKtPLK~~ivi~~---d~~~ledik~l~~yI~eElNVr 875 (1070)
T KOG0434 825 SIIDLARNIRERN-TISLKTPLKELIVIHS---DEEYLEDIKSLERYILEELNVR 875 (1070)
T ss_pred HHHHHHHHHHHCC-CCCCCCCHHHEEEECC---CHHHHHHHHHHHHHHHHHHCCE
T ss_conf 9999999776605-8754475033378748---7899877999999999860520
No 238
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family; InterPro: IPR014073 This entry describes one of two paralogous families of archaeal flavoprotein. The other, described by IPR014072 from INTERPRO and typified by the partially characterised AF1518 of ArchaArchaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown..
Probab=37.63 E-value=26 Score=14.59 Aligned_cols=117 Identities=16% Similarity=0.252 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHCCCC-CC-CCCHHHCCHHHHHHHHCCCCEECCCCCC
Q ss_conf 999999999998767664218981899964730108788987410011-00-1100111316888753059700235544
Q gi|255764472|r 78 EKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVN-VV-VGPQTYYRLPELLERARFGKRVVDTDYS 155 (469)
Q Consensus 78 ~k~~~~i~~~~~~~~~~~k~~p~~~IvVtGC~aq~~~e~l~~~~p~vd-~v-ig~~~~~~i~~~i~~~~~g~~~~~~~~~ 155 (469)
+++++-.++++ +++|+.+|- -+.++.+||+.+++.--| +. +-++++. -|++...+.|...+.....
T Consensus 14 ~esfqvmKelk-------~~~~el~v~---t~vSrAgEEVvrMyGL~~~L~~Is~G~yy--eE~f~esE~g~SsPi~GRf 81 (237)
T TIGR02700 14 DESFQVMKELK-------RRIEELKVS---TYVSRAGEEVVRMYGLFDELVEISNGDYY--EEVFLESEEGASSPIVGRF 81 (237)
T ss_pred HHHHHHHHHHH-------HCCCCCEEE---EEEHHHHHHHHHHHCCHHHHHHHCCCCCE--EEHHHHCCCCCCCCCCCCC
T ss_conf 88999999986-------308663466---31001322335411311566621589600--2010104788889710123
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 11244433333457567777257874123324468111001221376410058899988763101331058731454
Q gi|255764472|r 156 VEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNV 232 (469)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~a~ikI~~GC~~~CsfC~ip~~RG~~rSr~~~~Iv~ei~~l~~~G~kEi~L~g~d~ 232 (469)
..++|+.|-..+-..+ +. =||..| =.|++|--+=+-+-.|.--++.+=.|.
T Consensus 82 aLgkYD~LivsPAT~N----TV--aKia~G--------------------IADsLVTNAvaQAgKG~Vpv~vVPvDy 132 (237)
T TIGR02700 82 ALGKYDLLIVSPATAN----TV--AKIAYG--------------------IADSLVTNAVAQAGKGDVPVLVVPVDY 132 (237)
T ss_pred CCCCCCEEEECCCCCC----CH--HHEEEC--------------------CHHHHHHHHHHHCCCCCCCEEEEEEEC
T ss_conf 2453265787585102----00--110002--------------------100356767752237754358887521
No 239
>TIGR01828 pyru_phos_dikin pyruvate, phosphate dikinase; InterPro: IPR010121 Pyruvate phosphate dikinase (PPDK, or pyruvate orthophosphate dikinase) is found in plants, bacteria and archaea. The amino acid sequence identity between bacterial and plant enzymes is high, and they are similar in sequence to other PEP-utilizing enzymes. PPDK catalyses the reversible conversion of ATP and pyruvate to AMP and PEP (phosphoenolpyruvate). In bacteria such as Clostridium symbiosum, PPDK uses Mg2+ and NH4+ ions as cofactors . The enzyme has three domains: the N- and C-terminal domains each have an active site centre that catalyses a different step in the reaction, and the middle domain has a carrier histidine residue that moves between the two active centres. In plants, PPDK is localised predominantly in chloroplast stroma where it catalyses the rate-limiting step in the C4 photosynthetic pathway, namely the synthesis of PEP, which acts as the primary CO2 acceptor in C4 photosynthesis . PPDK activity in C4 plants is strictly regulated by light, its activity decreasing in darkness. This response is regulated by phosphorylation and dephosphorylation of the enzyme using ADP; such regulation is not seen in the bacterial form of the enzyme. PPDK is also found in C3 plants, but it is not known to have a photosynthetic role .; GO: 0050242 pyruvate phosphate dikinase activity.
Probab=37.47 E-value=14 Score=16.70 Aligned_cols=134 Identities=19% Similarity=0.246 Sum_probs=63.8
Q ss_pred CCCCCCC--CHHHHHHCCCCCCCCCEEEEE---------ECCCHHHHHHHCC-----CCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf 2100010--003665202211122013321---------1145789987303-----33441146789998740134432
Q gi|255764472|r 268 SHPRDMS--DCLIKAHGDLDVLMPYLHLPV---------QSGSDRILKSMNR-----RHTAYEYRQIIDRIRSVRPDIAI 331 (469)
Q Consensus 268 ~~P~~~~--~~li~~~~~~~~i~~~lhlpi---------QSgs~~vLk~M~R-----~~~~e~~~~~i~~~r~~~p~~~i 331 (469)
+-|-+-. .+|+.+|...|...+.||=|| +.--.++-+.|+- --+.+++.+.|+.|.+.+|=+.+
T Consensus 632 L~P~Q~~DF~~lFk~m~G~PV~IRLLDPPLHEFLP~~dle~~~~~lA~~~~~~~~~~l~~~~~i~~~v~~L~E~NPMLGh 711 (920)
T TIGR01828 632 LLPFQKEDFVGLFKAMEGLPVTIRLLDPPLHEFLPHTDLEELVKKLAEDMNSNKEEELLTAEKILKRVEELHEVNPMLGH 711 (920)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHCCCHHHHHHHHHHHHCCCCCCCC
T ss_conf 46666888999999863796389746888766588565899999999862788631104478999999876224877453
Q ss_pred CEE-EECCCCCCHH----HHHHHHHHHHHHHHHHHCCCHHEEECCCHHHHHCCCCCCHHHHHHHHHHHHHH-HHHHHHHH
Q ss_conf 000-0013522012----47898863322101110020000111201232143688989999999999999-99999999
Q gi|255764472|r 332 SSD-FIVGFPGETD----DDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKK-LREQQVSF 405 (469)
Q Consensus 332 ~td-iIvGfPgETe----edf~~Tl~~i~~~~~~~~~vf~yS~r~gT~Aa~m~~qV~~~vk~~R~~~l~~~-~~~~~~~~ 405 (469)
|.- +=+=||.=.+ .=|+..+++.++- .+.+. |+ =|=+-|. .++-++.|++. .++...+.
T Consensus 712 RGcRLG~t~PEIy~MQvrAI~eAA~~v~k~e---g~~~~---pE------IMIPLv~---~~~EL~~l~~~v~~~v~~~v 776 (920)
T TIGR01828 712 RGCRLGITYPEIYEMQVRAILEAAVEVKKEE---GIDVH---PE------IMIPLVG---EKNELKILKELVIEEVAAEV 776 (920)
T ss_pred CCHHEECCCCHHHHHHHHHHHHHHHHHHHCC---CCCCC---CC------CCCCCCC---CHHHHHHHHHHHHHHHHHHH
T ss_conf 7400104520267899999999888866316---75665---52------1455578---77899999999999999999
Q ss_pred HHHH-------CCCEEEE
Q ss_conf 9985-------7978999
Q gi|255764472|r 406 NDAC-------VGQIIEV 416 (469)
Q Consensus 406 ~~~~-------iG~~~~V 416 (469)
.+++ +|+-+++
T Consensus 777 ~~~~g~~~~Y~~GTMIE~ 794 (920)
T TIGR01828 777 FKEYGVTLPYKIGTMIEI 794 (920)
T ss_pred HHHCCCEEEEECCCCEEC
T ss_conf 863672300321564340
No 240
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=37.40 E-value=26 Score=14.56 Aligned_cols=53 Identities=9% Similarity=0.051 Sum_probs=28.2
Q ss_pred HHHHHHHHHHCCCCCCCEEEECCCC----CCHHHHHHHHHHHHHHHHHH-HCCCHHEEECCCHH
Q ss_conf 6789998740134432000001352----20124789886332210111-00200001112012
Q gi|255764472|r 316 RQIIDRIRSVRPDIAISSDFIVGFP----GETDDDFRATMDLVDKIGYA-QAFSFKYSPRLGTP 374 (469)
Q Consensus 316 ~~~i~~~r~~~p~~~i~tdiIvGfP----gETeedf~~Tl~~i~~~~~~-~~~vf~yS~r~gT~ 374 (469)
.++.+.+++. ++. .|++|+| |+.-+..+.+.+|.+++.-. .+-|+ |-.+..|-
T Consensus 44 ~~l~~ii~e~--~i~---~iViGlP~~~~g~~~~~~~~v~~F~~~L~~~~~l~v~-~~DEr~TS 101 (141)
T PRK00109 44 DALEKLLKEW--QPD---LLVVGLPLNMDGTEGPMTERARKFANRLEGRFGLPVE-LVDERLTT 101 (141)
T ss_pred HHHHHHHHHH--CCC---EEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEE-EEECCCCH
T ss_conf 9999999983--999---8999447999988448899999999999997299879-86243279
No 241
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=37.09 E-value=27 Score=14.53 Aligned_cols=10 Identities=20% Similarity=0.567 Sum_probs=7.1
Q ss_pred EEEECCCCCC
Q ss_conf 8741233244
Q gi|255764472|r 179 FLTIQEGCDK 188 (469)
Q Consensus 179 ~ikI~~GC~~ 188 (469)
.+.++.||-.
T Consensus 55 ~~El~nGCIC 64 (323)
T COG0523 55 VVELTNGCIC 64 (323)
T ss_pred EEEECCCCEE
T ss_conf 7983697078
No 242
>TIGR02172 Fb_sc_TIGR02172 Fibrobacter succinogenes paralogous family TIGR02172.
Probab=37.05 E-value=27 Score=14.52 Aligned_cols=68 Identities=19% Similarity=0.345 Sum_probs=50.4
Q ss_pred CCCCCCCCCCCCHHHHHHCCCCCCCCCEE------EEEECCCHHHHHHHC-CCCCCCHHHHHHHHHHHHCCCC--CCCEE
Q ss_conf 35442100010003665202211122013------321114578998730-3334411467899987401344--32000
Q gi|255764472|r 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLH------LPVQSGSDRILKSMN-RRHTAYEYRQIIDRIRSVRPDI--AISSD 334 (469)
Q Consensus 264 R~~s~~P~~~~~~li~~~~~~~~i~~~lh------lpiQSgs~~vLk~M~-R~~~~e~~~~~i~~~r~~~p~~--~i~td 334 (469)
|+-|=+|..+ +|+...+|+. |+-|| =-+||.-+.++|... +...+++|++.+..+=+.+|+. ++..|
T Consensus 89 Riis~~P~~L-~E~~k~fAe~---akkLH~~~cdt~~f~s~ke~~~~~i~ek~fvp~~~k~~~~a~i~~vPd~~tCLHGD 164 (234)
T TIGR02172 89 RIISDNPSRL-EEIAKIFAEM---AKKLHSTKCDTSKFQSYKEKIRKFIEEKDFVPDDYKEKARAFIEEVPDTKTCLHGD 164 (234)
T ss_pred EEECCCCCHH-HHHHHHHHHH---HHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCEECC
T ss_conf 3315883227-8999999987---68746866898766457899875103321573368999999986268988831012
Q ss_pred E
Q ss_conf 0
Q gi|255764472|r 335 F 335 (469)
Q Consensus 335 i 335 (469)
+
T Consensus 165 ~ 165 (234)
T TIGR02172 165 L 165 (234)
T ss_pred C
T ss_conf 3
No 243
>KOG1490 consensus
Probab=36.80 E-value=27 Score=14.50 Aligned_cols=11 Identities=27% Similarity=0.594 Sum_probs=4.3
Q ss_pred EEEECCCCCCC
Q ss_conf 87412332446
Q gi|255764472|r 179 FLTIQEGCDKF 189 (469)
Q Consensus 179 ~ikI~~GC~~~ 189 (469)
|.-+|+-|-+.
T Consensus 254 fmDLSe~CGyS 264 (620)
T KOG1490 254 FMDLSEMCGYS 264 (620)
T ss_pred EEECHHHHCCC
T ss_conf 34322120888
No 244
>PRK13138 consensus
Probab=36.33 E-value=26 Score=14.56 Aligned_cols=27 Identities=15% Similarity=0.026 Sum_probs=10.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCE
Q ss_conf 9999579856887899999999987986
Q gi|255764472|r 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYE 54 (469)
Q Consensus 27 v~i~TlGC~~N~~Dse~i~~~L~~~G~~ 54 (469)
+-+.|.|-+- .-.|..+...|.+.|-.
T Consensus 16 I~yitaG~P~-~e~t~~~~~~l~~~Gad 42 (264)
T PRK13138 16 IPYISLGDPD-YDSCIIWADALIRGGAG 42 (264)
T ss_pred EEEECCCCCC-HHHHHHHHHHHHHCCCC
T ss_conf 8886787999-89999999999977999
No 245
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=36.12 E-value=27 Score=14.42 Aligned_cols=35 Identities=26% Similarity=0.480 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 012213764100588999887631013310587314
Q gi|255764472|r 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ 230 (469)
Q Consensus 195 ip~~RG~~rSr~~~~Iv~ei~~l~~~G~kEi~L~g~ 230 (469)
|+..-|-+| .+++.+++|++.+.+.|++-|.|-|.
T Consensus 47 I~SMPGi~R-~Sid~l~~eve~~~~lGI~av~LFpv 81 (321)
T PRK09283 47 IPSMPGVYR-LSIDLLLKEAEEAVDLGIPAVALFGV 81 (321)
T ss_pred CCCCCCCCE-ECHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 689998504-28999999999999879998997378
No 246
>KOG1021 consensus
Probab=36.12 E-value=27 Score=14.42 Aligned_cols=16 Identities=6% Similarity=0.098 Sum_probs=7.6
Q ss_pred CCCCEEEEECCCCCEE
Q ss_conf 1331058731454113
Q gi|255764472|r 220 NGVCEITLLGQNVNAW 235 (469)
Q Consensus 220 ~G~kEi~L~g~d~~~Y 235 (469)
.|..+++..+-+.+.+
T Consensus 214 ~G~DH~~v~~~~~~~~ 229 (464)
T KOG1021 214 SGRDHFFVACHDWGDF 229 (464)
T ss_pred CCCCEEEEECCCCCCC
T ss_conf 9987799956766200
No 247
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=35.48 E-value=28 Score=14.35 Aligned_cols=37 Identities=32% Similarity=0.541 Sum_probs=22.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 00122137641005889998876310133105873145
Q gi|255764472|r 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQN 231 (469)
Q Consensus 194 ~ip~~RG~~rSr~~~~Iv~ei~~l~~~G~kEi~L~g~d 231 (469)
-||..-|-+| .|++.++++++.+++.|++-|.|-|.=
T Consensus 48 ~I~SMPgv~r-~s~d~l~~~~~~~~~lGi~av~LFgvp 84 (330)
T COG0113 48 EIPSMPGVYR-YSLDRLVEEAEELVDLGIPAVILFGVP 84 (330)
T ss_pred CCCCCCCCEE-CCHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 1678998302-069999999999996699779980898
No 248
>PRK13119 consensus
Probab=35.46 E-value=28 Score=14.35 Aligned_cols=38 Identities=16% Similarity=0.115 Sum_probs=22.8
Q ss_pred CCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHH
Q ss_conf 4411467899987401344320000013522012478988633
Q gi|255764472|r 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353 (469)
Q Consensus 311 ~~e~~~~~i~~~r~~~p~~~i~tdiIvGfPgETeedf~~Tl~~ 353 (469)
..++..+.++.+|+.. ..-+.|||==-|.|+.+...++
T Consensus 187 ~~~~~~~~i~~ik~~t-----~~Pv~vGFGIs~~e~v~~~~~~ 224 (261)
T PRK13119 187 DTDEVSRKIEYLHQYI-----DIPIGVGFGISNAESARKIGRV 224 (261)
T ss_pred CHHHHHHHHHHHHHCC-----CCCEEEEECCCCHHHHHHHHCC
T ss_conf 5488999999998636-----9987998365999999998734
No 249
>KOG2648 consensus
Probab=35.23 E-value=28 Score=14.32 Aligned_cols=18 Identities=17% Similarity=0.327 Sum_probs=8.6
Q ss_pred CCCCCHHHHHHHHHHHHH
Q ss_conf 352201247898863322
Q gi|255764472|r 338 GFPGETDDDFRATMDLVD 355 (469)
Q Consensus 338 GfPgETeedf~~Tl~~i~ 355 (469)
.+|+.--.+|++-++.++
T Consensus 355 ~W~~~~~~~~~~~~~~~~ 372 (453)
T KOG2648 355 AWTGDYLAPFVTAIKLLL 372 (453)
T ss_pred CCCCCCCCCHHHHHHHHH
T ss_conf 457655620566776652
No 250
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=34.88 E-value=18 Score=15.77 Aligned_cols=35 Identities=11% Similarity=0.080 Sum_probs=20.8
Q ss_pred CCCEEEEEEECCCCC----CHHHHHHHHHHHHHCCCEEC
Q ss_conf 776079999579856----88789999999998798687
Q gi|255764472|r 22 IVPQRFFVKSYGCQM----NVYDSLRMEDMFFSQGYERV 56 (469)
Q Consensus 22 ~~~kkv~i~TlGC~~----N~~Dse~i~~~L~~~G~~~~ 56 (469)
.|.|||.+..=|-.- ...-+..+...|.+.||+..
T Consensus 2 ~~~~kI~vl~GG~S~E~eVSl~S~~~v~~aL~~~~y~v~ 40 (304)
T PRK01372 2 KMFGKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAH 40 (304)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEE
T ss_conf 877718999367871289999999999998837599799
No 251
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=34.56 E-value=29 Score=14.25 Aligned_cols=33 Identities=30% Similarity=0.477 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 1221376410058899988763101331058731
Q gi|255764472|r 196 PYTRGIEISRSLSQVVDEARKLIDNGVCEITLLG 229 (469)
Q Consensus 196 p~~RG~~rSr~~~~Iv~ei~~l~~~G~kEi~L~g 229 (469)
|..-|-+| .+++.++++++.+++.|++-|.|-|
T Consensus 40 ~SMPGi~R-~sid~l~~~v~~~~~lGI~av~LFp 72 (314)
T cd00384 40 SSMPGVYR-LSVDSLVEEAEELADLGIRAVILFG 72 (314)
T ss_pred CCCCCCEE-ECHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 89998503-2899999999999987998899638
No 252
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=34.25 E-value=29 Score=14.21 Aligned_cols=20 Identities=25% Similarity=0.376 Sum_probs=11.3
Q ss_pred HHHHHHHHCCCCEEEEECCC
Q ss_conf 98876310133105873145
Q gi|255764472|r 212 DEARKLIDNGVCEITLLGQN 231 (469)
Q Consensus 212 ~ei~~l~~~G~kEi~L~g~d 231 (469)
+-++...+.|+.=|-+.|-+
T Consensus 145 ~AA~~A~~AGfDgVEIH~ah 164 (343)
T cd04734 145 DAARRCQAGGLDGVELQAAH 164 (343)
T ss_pred HHHHHHHHCCCCEEEECCCC
T ss_conf 99999997399889844577
No 253
>pfam00490 ALAD Delta-aminolevulinic acid dehydratase.
Probab=34.08 E-value=29 Score=14.19 Aligned_cols=35 Identities=23% Similarity=0.433 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 012213764100588999887631013310587314
Q gi|255764472|r 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ 230 (469)
Q Consensus 195 ip~~RG~~rSr~~~~Iv~ei~~l~~~G~kEi~L~g~ 230 (469)
|+..-|-+| .+++.++++++.+++.|++-|.|-|.
T Consensus 45 I~SMPGi~R-~sid~l~~~v~~~~~lGI~av~LFpv 79 (322)
T pfam00490 45 IPSMPGVYR-LSVDLLVKEVEEAVELGIPAVILFGV 79 (322)
T ss_pred CCCCCCCEE-ECHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 689998514-48999999999999779987998445
No 254
>PRK06762 hypothetical protein; Provisional
Probab=34.07 E-value=29 Score=14.19 Aligned_cols=128 Identities=21% Similarity=0.219 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCE---EEECCCCCCCCCCCHHHHHHHCCC---CCCCCCCCCCCC-
Q ss_conf 2137641005889998876310133105873145411---341134443100021678862044---430013544210-
Q gi|255764472|r 198 TRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNA---WRGKGLDGEKCTFSDLLYSLSEIK---GLVRLRYTTSHP- 270 (469)
Q Consensus 198 ~RG~~rSr~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~---Y~g~~~~~~~~~l~~Ll~~l~~i~---~~~riR~~s~~P- 270 (469)
.||++-|= --.+-++++.-. | +...|++||+-- -+-+|-.+ ..-..|++.+.... +..-|-=+-++.
T Consensus 7 iRGNSgSG-KtT~Ak~L~~~~--G-~g~lLvsQD~vRR~mLr~kD~~g--~~~i~Li~~~~~yg~~~~~~VIlEGIL~a~ 80 (166)
T PRK06762 7 IRGNSGSG-KTTIAKQLQERL--G-RGTLLVSQDVVRRDMLRVKDGPG--NLSIDLIEQLVRYGLQHCEFVILEGILNSD 80 (166)
T ss_pred EECCCCCC-HHHHHHHHHHHH--C-CCCEEEEHHHHHHHHHHCCCCCC--CCCHHHHHHHHHHHHHCCCEEEEEEECCHH
T ss_conf 97888888-789999999986--8-88578537589999840557799--978689999999998569989997410044
Q ss_pred --CCCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHH-HHHHHHHCCCCCCCEEEECCCCCCHH
Q ss_conf --001000366520221112201332111457899873033344114678-99987401344320000013522012
Q gi|255764472|r 271 --RDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQI-IDRIRSVRPDIAISSDFIVGFPGETD 344 (469)
Q Consensus 271 --~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~-i~~~r~~~p~~~i~tdiIvGfPgETe 344 (469)
..|-.+|++.+.. +..+=|||+|++ ..|++ +.+..+..++ .+.+|+ +..--|++ |+|+||-
T Consensus 81 ~Yg~ml~~l~~~~~~-~~~~YY~Di~Fe----ETlrR---H~tr~~~~~Fg~~~mr~----W~~~~D~L-~~~~E~~ 144 (166)
T PRK06762 81 RYGPMLKELIHLFGG-NAYTYYFDLSFE----ETVRR---HNTRPKSHEFGEDDMRR----WWLPHDTL-GVEGETI 144 (166)
T ss_pred HHHHHHHHHHHHCCC-CEEEEEEECCHH----HHHHH---HHCCCCCCCCCHHHHHH----HCCCCCCC-CCCCCEE
T ss_conf 899999999986578-669999948779----99998---74677656769899997----75554555-9998678
No 255
>pfam05049 IIGP Interferon-inducible GTPase (IIGP). Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing.
Probab=34.01 E-value=28 Score=14.40 Aligned_cols=54 Identities=20% Similarity=0.286 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHH-----HHCCCCE--EEEEC-CCCCEEEECCCCCCCCCCCHHHHHHH-CCCCCCC
Q ss_conf 1376410058899988763-----1013310--58731-45411341134443100021678862-0444300
Q gi|255764472|r 199 RGIEISRSLSQVVDEARKL-----IDNGVCE--ITLLG-QNVNAWRGKGLDGEKCTFSDLLYSLS-EIKGLVR 262 (469)
Q Consensus 199 RG~~rSr~~~~Iv~ei~~l-----~~~G~kE--i~L~g-~d~~~Y~g~~~~~~~~~l~~Ll~~l~-~i~~~~r 262 (469)
|++.++.+.+.++++|+.- .+.|+.| |.|++ -|++.| .|+.|-+.|. +++..+|
T Consensus 160 ~~kp~~F~~e~~Lq~IR~~c~~~L~k~gv~eP~VFLvSnfdl~~y----------DFp~L~~TL~~eLP~hKR 222 (375)
T pfam05049 160 KGKPQTFPKEKVLQNIQDNCRNNLQKEGVKEPPIFLVSNLDPSHY----------DFPKLRDTLLKDLPIIKR 222 (375)
T ss_pred HCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHC----------CHHHHHHHHHHHHHHHHH
T ss_conf 258999998999999999999999875888997899817881326----------818999999987368678
No 256
>PRK09989 hypothetical protein; Provisional
Probab=33.87 E-value=30 Score=14.17 Aligned_cols=39 Identities=23% Similarity=0.371 Sum_probs=31.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEECCCHHHH
Q ss_conf 352201247898863322101110020000111201232
Q gi|255764472|r 338 GFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 (469)
Q Consensus 338 GfPgETeedf~~Tl~~i~~~~~~~~~vf~yS~r~gT~Aa 376 (469)
+-||.-|=+|...++.+++..++----.-|.|+-.|.+.
T Consensus 212 ~ePg~Gei~~~~if~~l~~~GY~G~ig~EY~P~~~T~~~ 250 (258)
T PRK09989 212 HEPDDGEINYPWLFRLFDEVGYQGWIGCEYKPRGLTEEG 250 (258)
T ss_pred CCCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCHHH
T ss_conf 999898749999999999849997477887349997778
No 257
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric; InterPro: IPR006004 One pathway for the assimilation of ammonia and glutamate biosynthesis involves homotetrameric glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate . 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. .
Probab=33.71 E-value=21 Score=15.22 Aligned_cols=69 Identities=16% Similarity=0.277 Sum_probs=40.8
Q ss_pred EEEECCCHHHH----HHHCCCCCCCHHHHHHHHHHHH-CCCC----CCC-EEEECCCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 32111457899----8730333441146789998740-1344----320-000013522012478988633221011100
Q gi|255764472|r 293 LPVQSGSDRIL----KSMNRRHTAYEYRQIIDRIRSV-RPDI----AIS-SDFIVGFPGETDDDFRATMDLVDKIGYAQA 362 (469)
Q Consensus 293 lpiQSgs~~vL----k~M~R~~~~e~~~~~i~~~r~~-~p~~----~i~-tdiIvGfPgETeedf~~Tl~~i~~~~~~~~ 362 (469)
|+.=.|.++.+ ..+.|=|++.+|+..+...+++ +|.. .++ ..+|+|= |-|-=|-..|- ..+.-+.+
T Consensus 235 IgtGAG~pkl~NipG~~L~gvysA~dfLtR~nLmKAyefp~~dtPv~~gK~vvviGg-GntAvD~artA---lRLGaEqv 310 (462)
T TIGR01316 235 IGTGAGLPKLLNIPGEELKGVYSANDFLTRVNLMKAYEFPKKDTPVEVGKKVVVIGG-GNTAVDAARTA---LRLGAEQV 310 (462)
T ss_pred EEECCCCCEECCCCCHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCEEECCEEEEECC-CHHHHHHHHHH---HHCCCCEE
T ss_conf 950689870016784343400223468877777654236678875654476899878-53678777666---45284236
Q ss_pred CCH
Q ss_conf 200
Q gi|255764472|r 363 FSF 365 (469)
Q Consensus 363 ~vf 365 (469)
|+.
T Consensus 311 h~~ 313 (462)
T TIGR01316 311 HVV 313 (462)
T ss_pred EEE
T ss_conf 998
No 258
>KOG2918 consensus
Probab=33.67 E-value=26 Score=14.56 Aligned_cols=19 Identities=16% Similarity=0.038 Sum_probs=8.1
Q ss_pred CCCEEEEECCCCCCCHHHH
Q ss_conf 9818999647301087889
Q gi|255764472|r 99 GDLLVVVAGCVAQAEGEEI 117 (469)
Q Consensus 99 p~~~IvVtGC~aq~~~e~l 117 (469)
..+.||=.||--...+=.+
T Consensus 87 ~~~qivnLGcG~D~l~frL 105 (335)
T KOG2918 87 GKKQIVNLGAGFDTLYFRL 105 (335)
T ss_pred CCEEEEECCCCCCCHHHHH
T ss_conf 8659997377755123312
No 259
>PRK06843 inositol-5-monophosphate dehydrogenase; Validated
Probab=33.60 E-value=30 Score=14.14 Aligned_cols=14 Identities=29% Similarity=0.503 Sum_probs=8.3
Q ss_pred EEEEECCCCCCCCC
Q ss_conf 78741233244681
Q gi|255764472|r 178 AFLTIQEGCDKFCT 191 (469)
Q Consensus 178 a~ikI~~GC~~~Cs 191 (469)
+.|+|.-|.-.-||
T Consensus 217 D~VkVGiGpGsiCT 230 (404)
T PRK06843 217 DCLKVGIGPGSICT 230 (404)
T ss_pred CEEEECCCCCCCCC
T ss_conf 99995654787725
No 260
>KOG1122 consensus
Probab=33.49 E-value=30 Score=14.13 Aligned_cols=106 Identities=16% Similarity=0.263 Sum_probs=47.0
Q ss_pred HHHHHCCC---CCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCC-HHEEECCCHHHHH
Q ss_conf 99873033---3441146789998740134432000001352201247898863322101110020-0001112012321
Q gi|255764472|r 302 ILKSMNRR---HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS-FKYSPRLGTPGSN 377 (469)
Q Consensus 302 vLk~M~R~---~~~e~~~~~i~~~r~~~p~~~i~tdiIvGfPgETeedf~~Tl~~i~~~~~~~~~v-f~yS~r~gT~Aa~ 377 (469)
|-..|+-. |-.+...+.+..+++..+-+.+..++.+-+-|. .|-++. |.- .||++-. .|.| ||-
T Consensus 259 IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~---ef~~~~-~~~--~fDRVLLDAPCS---Gtg--- 326 (460)
T KOG1122 259 IAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGR---EFPEKE-FPG--SFDRVLLDAPCS---GTG--- 326 (460)
T ss_pred HHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCCCCEEEECCCCC---CCCCCC-CCC--CCCEEEECCCCC---CCC---
T ss_conf 99987277469961354377999998899748774489736763---255333-676--423145348777---775---
Q ss_pred CCCCCCHHHHH----HHHHHHHHHHHHHHHHHHHHH------CCCEEEEEEEC
Q ss_conf 43688989999----999999999999999999985------79789999842
Q gi|255764472|r 378 MLEQVDENVKA----ERLLCLQKKLREQQVSFNDAC------VGQIIEVLIEK 420 (469)
Q Consensus 378 m~~qV~~~vk~----~R~~~l~~~~~~~~~~~~~~~------iG~~~~Vlve~ 420 (469)
+- +-|+.+|. +-..++..+++++..+.-+.. +=.++.|.+||
T Consensus 327 vi-~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~E 378 (460)
T KOG1122 327 VI-SKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVEE 378 (460)
T ss_pred CC-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCHHH
T ss_conf 55-45510133012999987279999999998731157708999853226012
No 261
>PTZ00149 hypoxanthine phosphoribosyltransferase; Provisional
Probab=33.30 E-value=30 Score=14.11 Aligned_cols=68 Identities=18% Similarity=0.138 Sum_probs=39.8
Q ss_pred EEEECCCCCCCCCCCCHHHHHHHHHH--HHHHHHHHHHHHHHH-----CCCCEEEEECCCCCEEEECCCCCCCCCCCHHH
Q ss_conf 87412332446811100122137641--005889998876310-----13310587314541134113444310002167
Q gi|255764472|r 179 FLTIQEGCDKFCTFCVVPYTRGIEIS--RSLSQVVDEARKLID-----NGVCEITLLGQNVNAWRGKGLDGEKCTFSDLL 251 (469)
Q Consensus 179 ~ikI~~GC~~~CsfC~ip~~RG~~rS--r~~~~Iv~ei~~l~~-----~G~kEi~L~g~d~~~Y~g~~~~~~~~~l~~Ll 251 (469)
||+=..|-+- =.||+-+...|.+-+ .|-+.|.++++.|+. -|-++++++++=-|+| .=|++|+
T Consensus 18 ~I~D~~gy~~-~~F~~P~hY~~dle~VlIP~g~I~dRie~LA~dI~~dy~g~~i~llcVLKG~~---------~F~aDLv 87 (231)
T PTZ00149 18 FIKDDDGYDI-DSFLIPAHYKKYITKVLIPNGVIKNRIEKLAFDIKKVYNNEEFHIICLLKGSR---------GFFSALL 87 (231)
T ss_pred EECCCCCCCH-HHCCCCHHHHCCCCEEECCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCH---------HHHHHHH
T ss_conf 7468999878-76468744626655897167999999999999999984898179999964627---------8899999
Q ss_pred HHHHC
Q ss_conf 88620
Q gi|255764472|r 252 YSLSE 256 (469)
Q Consensus 252 ~~l~~ 256 (469)
+.|..
T Consensus 88 ~~l~~ 92 (231)
T PTZ00149 88 KHLNR 92 (231)
T ss_pred HHHHH
T ss_conf 99876
No 262
>cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E. coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme.
Probab=33.19 E-value=30 Score=14.09 Aligned_cols=124 Identities=18% Similarity=0.237 Sum_probs=62.1
Q ss_pred HHHHHHHHHHH-HCCCCEEEEECCCCCEEEECCCCC--CCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCC
Q ss_conf 88999887631-013310587314541134113444--310002167886204443001354421000100036652022
Q gi|255764472|r 208 SQVVDEARKLI-DNGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL 284 (469)
Q Consensus 208 ~~Iv~ei~~l~-~~G~kEi~L~g~d~~~Y~g~~~~~--~~~~l~~Ll~~l~~i~~~~riR~~s~~P~~~~~~li~~~~~~ 284 (469)
..|++|++..- ..|-.=|.+. | |+.++. .+..-..|.+.+.++..-..-++....+..+.+.|+ .+.
T Consensus 198 ~kiiqele~~F~~aGW~VIkv~------w-G~~wd~lf~~d~~g~L~~~m~e~~dg~yQ~~~~~~Ga~~Re~ff---g~~ 267 (386)
T cd02017 198 GKIIQELEGIFRGAGWNVIKVI------W-GSKWDELLAKDGGGALRQRMEETVDGDYQTLKAKDGAYVREHFF---GKY 267 (386)
T ss_pred CCHHHHHHHHHHHCCCEEEEEC------C-CHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHC---CCC
T ss_conf 3258999999987798089853------2-21499997678754699998866788889887247599999980---898
Q ss_pred CCCCCCEEEEEECCCHHHHHHHCCC-CCCCHHHHHHHHHHHH--CCCCCCCEEEE-CCCC--CCHHH
Q ss_conf 1112201332111457899873033-3441146789998740--13443200000-1352--20124
Q gi|255764472|r 285 DVLMPYLHLPVQSGSDRILKSMNRR-HTAYEYRQIIDRIRSV--RPDIAISSDFI-VGFP--GETDD 345 (469)
Q Consensus 285 ~~i~~~lhlpiQSgs~~vLk~M~R~-~~~e~~~~~i~~~r~~--~p~~~i~tdiI-vGfP--gETee 345 (469)
+.+.. -+.+-||.=|..++|+ |+.....+++..+.+. .|-+.|.-++. .|.| ||-..
T Consensus 268 pel~~----lv~~lsD~dl~~L~rGGHD~~kl~aAy~~A~~~~grPTVIlA~TvKG~Glg~age~~N 330 (386)
T cd02017 268 PELKA----LVTDLSDEDLWALNRGGHDPRKVYAAYKKAVEHKGKPTVILAKTIKGYGLGAAGEGRN 330 (386)
T ss_pred HHHHH----HHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCCCC
T ss_conf 88999----9850788789987628999899999999998479998799977441278881336765
No 263
>PRK06180 short chain dehydrogenase; Provisional
Probab=33.06 E-value=30 Score=14.09 Aligned_cols=32 Identities=9% Similarity=0.127 Sum_probs=21.9
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEC
Q ss_conf 77607999957985688789999999998798687
Q gi|255764472|r 22 IVPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERV 56 (469)
Q Consensus 22 ~~~kkv~i~TlGC~~N~~Dse~i~~~L~~~G~~~~ 56 (469)
|.++|+.++| ||. ..=...+...|.+.|+.++
T Consensus 1 M~~~KvvlIT-Gas--sGIG~aiA~~l~~~G~~Vi 32 (277)
T PRK06180 1 MASMKTWLIT-GVS--SGFGRALAQAALAAGHRVV 32 (277)
T ss_pred CCCCCEEEEC-CCC--CHHHHHHHHHHHHCCCEEE
T ss_conf 9999889991-787--3999999999998799999
No 264
>KOG4306 consensus
Probab=32.87 E-value=31 Score=14.06 Aligned_cols=69 Identities=19% Similarity=0.271 Sum_probs=43.2
Q ss_pred EEEC---CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCCCHHHHHHHC
Q ss_conf 7412---3324468111001221376410058899988763101331058731454113411344431000216788620
Q gi|255764472|r 180 LTIQ---EGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256 (469)
Q Consensus 180 ikI~---~GC~~~CsfC~ip~~RG~~rSr~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y~g~~~~~~~~~l~~Ll~~l~~ 256 (469)
|.|+ ++=+..|-|| .|-+.++++.+++.||+.++.+--.||++..-... | |.+-+ ....|...+.+
T Consensus 85 lRi~~~~~~~D~~~~i~-----HGl~~~~~v~~vL~ev~~Fl~~h~eEVViL~f~~~-f-g~~~~----~h~~l~~~ik~ 153 (306)
T KOG4306 85 LRIGYKLMDPDREFYIC-----HGLFSTYPVLEVLNEVRQFLSEHPEEVVILEFRHF-F-GMTEP----HHRKLVLVIKQ 153 (306)
T ss_pred EEEEECCCCCCCCEEEE-----EECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCH-H-CCCCC----HHHHHHHHHHH
T ss_conf 88420468998645898-----30321002999999999999848877999955410-0-46860----89999999999
Q ss_pred CCC
Q ss_conf 444
Q gi|255764472|r 257 IKG 259 (469)
Q Consensus 257 i~~ 259 (469)
.-|
T Consensus 154 ~~g 156 (306)
T KOG4306 154 GFG 156 (306)
T ss_pred HHC
T ss_conf 845
No 265
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=32.58 E-value=31 Score=14.02 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 0588999887631013310587314
Q gi|255764472|r 206 SLSQVVDEARKLIDNGVCEITLLGQ 230 (469)
Q Consensus 206 ~~~~Iv~ei~~l~~~G~kEi~L~g~ 230 (469)
+++.++++++.+.+.|++-|.|-|.
T Consensus 60 SiD~L~~eie~~~~lGI~av~LFgi 84 (323)
T PRK13384 60 PESALADEIERLYALGIRYVMPFGI 84 (323)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 9999999999999789968983699
No 266
>TIGR01017 rpsD_bact ribosomal protein S4; InterPro: IPR005709 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites , . About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many of ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome , . The S4 domain is a small domain consisting of 60-65 amino acid residues that probably mediates binding to RNA. This family consists of organelle (chloroplast and mitochondrial) ribosomal protein S4 as well as bacterial ribosomal protein S4.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0015935 small ribosomal subunit.
Probab=32.46 E-value=31 Score=14.01 Aligned_cols=11 Identities=45% Similarity=0.782 Sum_probs=6.1
Q ss_pred CCEEEEEECCC
Q ss_conf 20133211145
Q gi|255764472|r 289 PYLHLPVQSGS 299 (469)
Q Consensus 289 ~~lhlpiQSgs 299 (469)
|++|-|-|||.
T Consensus 34 ~~~~~PGQHG~ 44 (217)
T TIGR01017 34 PFLYPPGQHGQ 44 (217)
T ss_pred CCCCCCCCCCH
T ss_conf 14688887641
No 267
>TIGR00106 TIGR00106 conserved hypothetical protein TIGR00106; InterPro: IPR002767 This entry contains several hypothetical proteins of unknown function found in archaebacteria, eukaryotes and eubacteria. The structures of YBL001c from Saccharomyces cerevisiae and its homologue MTH1187 from the archaea Methanobacterium thermoautotrophicum have been determined . These proteins have a ferredoxin-like alpha/beta sandwich structure with anti-parallel beta-sheets. Generally, they have two domains that form a single beta-sheet dimer, where two dimers pack sheet-to-sheet into a tetramer, some proteins having an extra C-terminal helix. .
Probab=32.29 E-value=29 Score=14.19 Aligned_cols=32 Identities=22% Similarity=0.357 Sum_probs=23.3
Q ss_pred CCCHHHH-HHHHHHHHHHHHHHHHH-HHHHCCCC
Q ss_conf 1100122-13764100588999887-63101331
Q gi|255764472|r 192 FCVVPYT-RGIEISRSLSQVVDEAR-KLIDNGVC 223 (469)
Q Consensus 192 fC~ip~~-RG~~rSr~~~~Iv~ei~-~l~~~G~k 223 (469)
-|+||.. .|.+.|.=+..+.+-++ +-++.|+|
T Consensus 5 v~~vPlGT~g~SvS~YVA~~~k~L~Gyqae~~lk 38 (103)
T TIGR00106 5 VTVVPLGTVGASVSSYVAAVIKVLKGYQAEEGLK 38 (103)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 8862048888777789999999985103445774
No 268
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=32.20 E-value=31 Score=13.98 Aligned_cols=42 Identities=26% Similarity=0.632 Sum_probs=22.5
Q ss_pred CCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 14578998730333441146789998740134432000001352201247898863322101
Q gi|255764472|r 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358 (469)
Q Consensus 297 Sgs~~vLk~M~R~~~~e~~~~~i~~~r~~~p~~~i~tdiIvGfPgETeedf~~Tl~~i~~~~ 358 (469)
||=+-.||.||- +++ +|++ ..+.+ -|..+|...-++.++++.
T Consensus 251 sGv~gl~kalnp--------Ell--~~Sa-~sM~l---------~e~q~~l~~al~~~~~l~ 292 (341)
T PRK12557 251 SGVDGLLKALNP--------ELL--LRSA-SSMHL---------LEKQEDLDAALEILENLD 292 (341)
T ss_pred CCHHHHHHHCCH--------HHH--HHHH-HHHHH---------HHHHHHHHHHHHHHHHCC
T ss_conf 065789985299--------999--9887-63335---------677999999999999702
No 269
>pfam03709 OKR_DC_1_N Orn/Lys/Arg decarboxylase, N-terminal domain. This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure.
Probab=32.07 E-value=32 Score=13.97 Aligned_cols=67 Identities=25% Similarity=0.331 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHCCCEECC--CCC--------CCCE--EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 7899999999987986877--601--------0889--999278325079999999999999876766421898189996
Q gi|255764472|r 39 YDSLRMEDMFFSQGYERVN--SMD--------DADL--IVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVA 106 (469)
Q Consensus 39 ~Dse~i~~~L~~~G~~~~~--~~~--------~ADv--iiINTCsV~~~ae~k~~~~i~~~~~~~~~~~k~~p~~~IvVt 106 (469)
.-+..+...|.+.|++++. +.+ .+|+ +|+.- ++.....+..++ +.|++.+|.+.
T Consensus 4 ~~~~~l~~~l~~~~~~vv~~~~~~d~~~~~~~~~~i~avil~~-------~~~~~~ll~~ir-------~~n~~lPvFl~ 69 (111)
T pfam03709 4 AASRELAEALEATGREVVDATSTDDLLSLIETFTDIAAVVLSW-------DDEARGLLDEIR-------RRNFDLPVFLL 69 (111)
T ss_pred HHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEEEE-------CHHHHHHHHHHH-------HHCCCCCEEEE
T ss_conf 4589999999978988997487899999998387876899984-------606899999999-------74789998988
Q ss_pred CCC--CCCCHHHHHH
Q ss_conf 473--0108788987
Q gi|255764472|r 107 GCV--AQAEGEEILR 119 (469)
Q Consensus 107 GC~--aq~~~e~l~~ 119 (469)
++- .+.-|.+.+.
T Consensus 70 ~~~~~~~~vp~~~l~ 84 (111)
T pfam03709 70 AETRTSEDVPLDVLR 84 (111)
T ss_pred ECHHHHHCCCHHHHH
T ss_conf 441257509999999
No 270
>pfam07293 DUF1450 Protein of unknown function (DUF1450). This family consists of several hypothetical bacterial proteins of around 80 residues in length. Members of this family contain four highly conserved cysteine residues. The function of this family is unknown.
Probab=31.87 E-value=18 Score=15.80 Aligned_cols=39 Identities=18% Similarity=0.595 Sum_probs=25.0
Q ss_pred ECCCCCCCCCCCC-HHHH--HHHHH-HHHHHHHHHHHHHHHHC
Q ss_conf 1233244681110-0122--13764-10058899988763101
Q gi|255764472|r 182 IQEGCDKFCTFCV-VPYT--RGIEI-SRSLSQVVDEARKLIDN 220 (469)
Q Consensus 182 I~~GC~~~CsfC~-ip~~--RG~~r-Sr~~~~Iv~ei~~l~~~ 220 (469)
|.-||...|.-|. .||+ -|+.. --.+|+.++.|...++.
T Consensus 32 ~eygCL~~CG~C~~~pfAlVnGe~V~a~t~eeL~~~I~~~Iee 74 (78)
T pfam07293 32 LEYGCLSYCGICAESLFALVNGEIVEGDTPEELVENIYQFIEE 74 (78)
T ss_pred EECCHHHHHHHHCCCCEEEECCEEEECCCHHHHHHHHHHHHHH
T ss_conf 8716666633030475138888578649999999999999851
No 271
>PRK03906 mannonate dehydratase; Provisional
Probab=31.72 E-value=32 Score=13.93 Aligned_cols=20 Identities=15% Similarity=0.341 Sum_probs=8.3
Q ss_pred CCCHHHHHHHHHHHHCCCCC
Q ss_conf 44114678999874013443
Q gi|255764472|r 311 TAYEYRQIIDRIRSVRPDIA 330 (469)
Q Consensus 311 ~~e~~~~~i~~~r~~~p~~~ 330 (469)
+.+++..+++..-+...|++
T Consensus 250 ~~ed~~~ll~~v~Sp~NGit 269 (389)
T PRK03906 250 TEEDLQRLLDAVDSPANGLT 269 (389)
T ss_pred CHHHHHHHHHHCCCCCCCEE
T ss_conf 99999999983799200777
No 272
>PRK06411 NADH dehydrogenase subunit B; Validated
Probab=31.68 E-value=32 Score=13.92 Aligned_cols=28 Identities=21% Similarity=0.176 Sum_probs=19.3
Q ss_pred HHHHCCCEECCCCCCCCEEEEECCCCCHH
Q ss_conf 99987986877601088999927832507
Q gi|255764472|r 47 MFFSQGYERVNSMDDADLIVLNTCHIREK 75 (469)
Q Consensus 47 ~L~~~G~~~~~~~~~ADviiINTCsV~~~ 75 (469)
.+..-|...+.+|..||++||.- +||.+
T Consensus 66 D~eRfG~~~~aSPRqADvliVtG-~vT~k 93 (195)
T PRK06411 66 DLDRFGMVFRASPRQADLMIVAG-TLTNK 93 (195)
T ss_pred CHHHCCEEECCCCCCCCEEEEEC-CCHHH
T ss_conf 77770525605875244789705-23188
No 273
>PRK13118 consensus
Probab=31.37 E-value=32 Score=13.89 Aligned_cols=37 Identities=19% Similarity=0.255 Sum_probs=21.5
Q ss_pred CCHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHH
Q ss_conf 411467899987401344320000013522012478988633
Q gi|255764472|r 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353 (469)
Q Consensus 312 ~e~~~~~i~~~r~~~p~~~i~tdiIvGfPgETeedf~~Tl~~ 353 (469)
.+...+.+.++|+.. ..-+.|||==-|.|+.++..+.
T Consensus 190 ~~~~~~~i~~ik~~t-----~~Pv~vGFGIs~~e~~~~v~~~ 226 (269)
T PRK13118 190 TEHVEEAVARLRRHT-----DLPVVVGFGIRDAESAAAIARL 226 (269)
T ss_pred HHHHHHHHHHHHHHC-----CCCEEEEECCCCHHHHHHHHCC
T ss_conf 198999999999625-----8981787167999999999800
No 274
>pfam02364 Glucan_synthase 1,3-beta-glucan synthase component. This family consists of various 1,3-beta-glucan synthase components including Gls1, Gls2 and Gls3 from yeast. 1,3-beta-glucan synthase EC:2.4.1.34 also known as callose synthase catalyses the formation of a beta-1,3-glucan polymer that is a major component of the fungal cell wall. The reaction catalysed is:- UDP-glucose + {(1,3)-beta-D-glucosyl}(N) <= UDP + {(1,3)-beta-D-glucosyl}(N+1).
Probab=31.33 E-value=23 Score=14.96 Aligned_cols=115 Identities=22% Similarity=0.305 Sum_probs=59.9
Q ss_pred ECCCCCCCCCCCCHHHHHHHHH-------------HHHHHHHHHHHHHH--------------------HHCCCCEEEEE
Q ss_conf 1233244681110012213764-------------10058899988763--------------------10133105873
Q gi|255764472|r 182 IQEGCDKFCTFCVVPYTRGIEI-------------SRSLSQVVDEARKL--------------------IDNGVCEITLL 228 (469)
Q Consensus 182 I~~GC~~~CsfC~ip~~RG~~r-------------Sr~~~~Iv~ei~~l--------------------~~~G~kEi~L~ 228 (469)
+.+|=|-.=.-.+| ++||... ...+-++++|.+.. .--|+||-++|
T Consensus 272 LGeGKpeNQNHAiI-FtRGEyiQtIDmNQDnYlEE~lKmRnlL~EFee~~~~~~~py~~~~~~~~~~pvaIlG~REhIFS 350 (817)
T pfam02364 272 LGDGKSDNQNHALI-FYRGEYIQLIDANQDNYLEECLKIRSVLAEFEELHLDTVDPYAPGLEEEEIRPVAILGAREYIFS 350 (817)
T ss_pred CCCCCCCCCCCEEE-EECCCHHEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCEEEEEC
T ss_conf 68898777775023-54242111212341026899988888999987522555576665543346898528512005753
Q ss_pred CCCCCEEEECCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHC
Q ss_conf 1454113411344431000216788620444300135442100010003665202211122013321114578998730
Q gi|255764472|r 229 GQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN 307 (469)
Q Consensus 229 g~d~~~Y~g~~~~~~~~~l~~Ll~~l~~i~~~~riR~~s~~P~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~ 307 (469)
| ++++- ++-.-+....|..|..++..-++ +|+.|-||+.++.-+.-.=....|--+-+|| |..|-.-||
T Consensus 351 ~-~vgsL-a~faa~qE~sF~Tl~qR~LA~pl---vRlHYGHPDvfn~iF~~TRGGVSKAskglhL-----sEDIfAG~N 419 (817)
T pfam02364 351 E-NIGIL-GDVAAGKEQTFGTLFARTLAQIG---GKLHYGHPDFLNGIFMTTRGGVSKAQKGLHL-----NEDIYAGMN 419 (817)
T ss_pred C-CCHHH-HHHHHCCCEEEEEHHHHHHHCCC---CCCCCCCCHHHCCEEEEECCCCCHHHCCCCC-----CHHHHHHHH
T ss_conf 7-71168-88874154110006788863241---0113789215305446504762111025565-----557650036
No 275
>TIGR00069 hisD histidinol dehydrogenase; InterPro: IPR001692 Histidinol dehydrogenase (1.1.1.23 from EC) (HDH) catalyses the terminal step in the biosynthesis of histidine in bacteria, fungi, and plants, the four-electron oxidation of L-histidinol to histidine. In 4-electron dehydrogenases, a single active site catalyses 2 separate oxidation steps: oxidation of the substrate alcohol to an intermediate aldehyde; and oxidation of the aldehyde to the product acid, in this case His . The reaction proceeds via a tightly- or covalently-bound inter-mediate, and requires the presence of 2 NAD molecules . By contrast with most dehydrogenases, the substrate is bound before the NAD coenzyme . A Cys residue has been implicated in the catalytic mechanism of the second oxidative step . In bacteria HDH is a single chain polypeptide; in fungi it is the C-terminal domain of a multifunctional enzyme which catalyzes three different steps of histidine biosynthesis; and in plants it is expressed as nuclear encoded protein precursor which is exported to the chloroplast .; GO: 0004399 histidinol dehydrogenase activity, 0000105 histidine biosynthetic process.
Probab=31.28 E-value=32 Score=13.87 Aligned_cols=27 Identities=7% Similarity=0.306 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHEEEC
Q ss_conf 247898863322101110020000111
Q gi|255764472|r 344 DDDFRATMDLVDKIGYAQAFSFKYSPR 370 (469)
Q Consensus 344 eedf~~Tl~~i~~~~~~~~~vf~yS~r 370 (469)
-+|.++.++|.+++-|+|+-|-.=+|+
T Consensus 313 ~~~l~ea~E~sN~YAPEHL~i~t~np~ 339 (435)
T TIGR00069 313 TEDLEEAVEISNEYAPEHLIILTKNPE 339 (435)
T ss_pred EHHHHHHHHHHHCCCCHHHHHHHCCHH
T ss_conf 102899999862423056889860678
No 276
>COG3855 Fbp Uncharacterized protein conserved in bacteria [Carbohydrate transport and metabolism]
Probab=31.08 E-value=30 Score=14.08 Aligned_cols=17 Identities=24% Similarity=0.483 Sum_probs=10.6
Q ss_pred CCCCCCHHHHHHHHHHH
Q ss_conf 68111001221376410
Q gi|255764472|r 189 FCTFCVVPYTRGIEISR 205 (469)
Q Consensus 189 ~CsfC~ip~~RG~~rSr 205 (469)
-|.||..+++|.+.|--
T Consensus 120 ~~k~v~sKYTRSKvRKA 136 (648)
T COG3855 120 LCKYVSSKYTRSKVRKA 136 (648)
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 99998626438989875
No 277
>pfam05853 DUF849 Prokaryotic protein of unknown function (DUF849). This family consists of several hypothetical prokaryotic proteins with no known function.
Probab=30.84 E-value=33 Score=13.82 Aligned_cols=23 Identities=17% Similarity=0.297 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 05889998876310133105873
Q gi|255764472|r 206 SLSQVVDEARKLIDNGVCEITLL 228 (469)
Q Consensus 206 ~~~~Iv~ei~~l~~~G~kEi~L~ 228 (469)
.+++|++++....+.|+.-+-|.
T Consensus 24 Tp~Eia~~A~~c~~AGAsivH~H 46 (274)
T pfam05853 24 TPEEIAEEAVAAAEAGAAIVHLH 46 (274)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 98999999999997087389988
No 278
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=30.37 E-value=34 Score=13.77 Aligned_cols=130 Identities=14% Similarity=0.292 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHH---HCCCCEEEEECCCCCEEEECCCCCCCCCC-CHHHHHHHC-CCCC-CCCCCCCCCCCCCCCHH
Q ss_conf 100588999887631---01331058731454113411344431000-216788620-4443-00135442100010003
Q gi|255764472|r 204 SRSLSQVVDEARKLI---DNGVCEITLLGQNVNAWRGKGLDGEKCTF-SDLLYSLSE-IKGL-VRLRYTTSHPRDMSDCL 277 (469)
Q Consensus 204 Sr~~~~Iv~ei~~l~---~~G~kEi~L~g~d~~~Y~g~~~~~~~~~l-~~Ll~~l~~-i~~~-~riR~~s~~P~~~~~~l 277 (469)
|-...++-+|++.+. +.|+.-+-+ |+.+ +......+| +++++.+.+ .+.. .-+++..-+|. .+
T Consensus 10 ~aD~~~L~~ei~~~~~~~~~g~d~lHi---DImD----G~FVpN~t~g~~~v~~ir~~~~~~~lDvHLMv~~P~----~~ 78 (224)
T PTZ00170 10 AADFTKLLDESQDVLSPEGGGADWLHV---DVMD----GHFVPNLSFGPPVVSSLRKHLPNTFLDVHLMVSDPE----RW 78 (224)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEEE---ECCC----CCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCHH----HH
T ss_conf 646999999999998634059978999---4405----850776574978999999717998646899863888----87
Q ss_pred HHHHCCCC--CCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHH--CCCCCCCEEEECCCCCCHHHHHHHHHHH
Q ss_conf 66520221--1122013321114578998730333441146789998740--1344320000013522012478988633
Q gi|255764472|r 278 IKAHGDLD--VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV--RPDIAISSDFIVGFPGETDDDFRATMDL 353 (469)
Q Consensus 278 i~~~~~~~--~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~~~r~~--~p~~~i~tdiIvGfPgETeedf~~Tl~~ 353 (469)
++.+.+.+ .++ +| ++|-+ ...+.++.+|+. .+|+++. |+-.-+..+ .+
T Consensus 79 i~~~~~~gad~I~--~H--~E~~~--------------~~~~~i~~ik~~g~k~GlAln-------P~T~i~~l~---~~ 130 (224)
T PTZ00170 79 VDSFAKAGASQFT--FH--IEATE--------------DPKAVARKIRAAGMQVGVALK-------PKTPAEELF---PL 130 (224)
T ss_pred HHHHHHCCCCEEE--EC--CCCCC--------------CHHHHHHHHHHHCCCEEEEEC-------CCCCHHHHH---HH
T ss_conf 9999862896799--85--00133--------------999999999971476455607-------999879999---99
Q ss_pred HHHHHHHHCCCHHEEECCCHH
Q ss_conf 221011100200001112012
Q gi|255764472|r 354 VDKIGYAQAFSFKYSPRLGTP 374 (469)
Q Consensus 354 i~~~~~~~~~vf~yS~r~gT~ 374 (469)
+++...|.+-+- |-.||--
T Consensus 131 l~~~~iD~VLlM--sV~PGf~ 149 (224)
T PTZ00170 131 IDAGLVDMVLVM--TVEPGFG 149 (224)
T ss_pred HHHCCCCEEEEE--EECCCCC
T ss_conf 711445789998--5569987
No 279
>pfam00728 Glyco_hydro_20 Glycosyl hydrolase family 20, catalytic domain. This domain has a TIM barrel fold.
Probab=30.26 E-value=34 Score=13.76 Aligned_cols=20 Identities=5% Similarity=-0.004 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHCCCC
Q ss_conf 10058899988763101331
Q gi|255764472|r 204 SRSLSQVVDEARKLIDNGVC 223 (469)
Q Consensus 204 Sr~~~~Iv~ei~~l~~~G~k 223 (469)
+++.++|.+=++....+|++
T Consensus 66 ~yT~~ei~~lv~yA~~rgI~ 85 (335)
T pfam00728 66 FYTQEDIREIVAYAAARGIE 85 (335)
T ss_pred CCCHHHHHHHHHHHHHCCCE
T ss_conf 62999999999999985998
No 280
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component; InterPro: IPR013789 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) , is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC . These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose , , , . The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components..
Probab=30.09 E-value=34 Score=13.74 Aligned_cols=38 Identities=16% Similarity=0.334 Sum_probs=21.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCEEEEECCCC
Q ss_conf 111001221376410058899988763101-331058731454
Q gi|255764472|r 191 TFCVVPYTRGIEISRSLSQVVDEARKLIDN-GVCEITLLGQNV 232 (469)
Q Consensus 191 sfC~ip~~RG~~rSr~~~~Iv~ei~~l~~~-G~kEi~L~g~d~ 232 (469)
.+|.|||..|- .++++.+..+..++. --.|=||.-+|+
T Consensus 29 n~~av~F~~GE----n~~~L~~k~~~~l~d~~t~~~~l~lVD~ 67 (117)
T TIGR00824 29 NVSAVPFVPGE----NIETLQEKYEKALSDLDTEEEVLILVDI 67 (117)
T ss_pred CEEEECCCCCC----CHHHHHHHHHHHHHHCCCCCCEEEEEEC
T ss_conf 70542276998----9889999999998402668876899876
No 281
>TIGR01360 aden_kin_iso1 adenylate kinase; InterPro: IPR006267 Members of this family are adenylate kinase, 2.7.4.3 from EC. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (IPR006266 from INTERPRO), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in IPR006259 from INTERPRO.; GO: 0004017 adenylate kinase activity, 0005524 ATP binding, 0046034 ATP metabolic process, 0005737 cytoplasm.
Probab=30.00 E-value=34 Score=13.72 Aligned_cols=98 Identities=18% Similarity=0.226 Sum_probs=51.4
Q ss_pred CCCHH---HHHHHCCCC--CCCHHHHHHHHH--HHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCH-HEE
Q ss_conf 14578---998730333--441146789998--7401344320000013522012478988633221011100200-001
Q gi|255764472|r 297 SGSDR---ILKSMNRRH--TAYEYRQIIDRI--RSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSF-KYS 368 (469)
Q Consensus 297 Sgs~~---vLk~M~R~~--~~e~~~~~i~~~--r~~~p~~~i~tdiIvGfPgETeedf~~Tl~~i~~~~~~~~~vf-~yS 368 (469)
|||++ +-.-|-|+- ..+.++++++.+ ++. +-.=..-+|=|||=|- .|=-+|=+++.+..+=+| --|
T Consensus 44 SgS~rg~~L~aiMe~G~LVp~~~VL~Ll~dAm~~~~--~~GskGFLIDGYPRev----~QG~eFe~~I~~a~L~Ly~d~s 117 (191)
T TIGR01360 44 SGSERGKQLQAIMESGELVPLDVVLDLLKDAMLAAL--GKGSKGFLIDGYPREV----KQGEEFEKRIAPAKLVLYFDCS 117 (191)
T ss_pred CCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH--CCCCCCCCCCCCCCCH----HHHHHHHHHCCCCCEEEEEECC
T ss_conf 578114789999861885550668999999999862--4898631126873320----1124567515996346430004
Q ss_pred ECCCH-----H-HHHCCCCCC--HHHHHHHHHHHHHHHHH
Q ss_conf 11201-----2-321436889--89999999999999999
Q gi|255764472|r 369 PRLGT-----P-GSNMLEQVD--ENVKAERLLCLQKKLRE 400 (469)
Q Consensus 369 ~r~gT-----~-Aa~m~~qV~--~~vk~~R~~~l~~~~~~ 400 (469)
..--+ . +++.-..+| .+++++|+......-.-
T Consensus 118 ~dTmv~RLL~Ra~~S~vkR~DDn~~TI~kRL~ty~~~t~p 157 (191)
T TIGR01360 118 EDTMVKRLLKRAETSGVKRVDDNEKTIKKRLETYYKATEP 157 (191)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 4479999999876247998898878999999998850288
No 282
>KOG3002 consensus
Probab=29.80 E-value=31 Score=13.98 Aligned_cols=38 Identities=18% Similarity=0.276 Sum_probs=27.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHH---HHHHCCCCEEE
Q ss_conf 44681110012213764100588999887---63101331058
Q gi|255764472|r 187 DKFCTFCVVPYTRGIEISRSLSQVVDEAR---KLIDNGVCEIT 226 (469)
Q Consensus 187 ~~~CsfC~ip~~RG~~rSr~~~~Iv~ei~---~l~~~G~kEi~ 226 (469)
...|-||.-|.. +.|+|-.|.|++.+. ...+.|.++..
T Consensus 80 ~~~CP~Cr~~~g--~~R~~amEkV~e~~~vpC~~~~~GC~~~~ 120 (299)
T KOG3002 80 SNKCPTCRLPIG--NIRCRAMEKVAEAVLVPCKNAKLGCTKSF 120 (299)
T ss_pred CCCCCCCCCCCC--CHHHHHHHHHHHHCEECCCCCCCCCCEEE
T ss_conf 055986545565--27788999998756320666346985345
No 283
>cd01823 SEST_like SEST_like. A family of secreted SGNH-hydrolases similar to Streptomyces scabies esterase (SEST), a causal agent of the potato scab disease, which hydrolyzes a specific ester bond in suberin, a plant lipid. The tertiary fold of this enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxylic acid.
Probab=29.57 E-value=34 Score=13.73 Aligned_cols=31 Identities=29% Similarity=0.613 Sum_probs=24.4
Q ss_pred CHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHH
Q ss_conf 1146789998740134432000001352201247
Q gi|255764472|r 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDD 346 (469)
Q Consensus 313 e~~~~~i~~~r~~~p~~~i~tdiIvGfPgETeed 346 (469)
+++..+++.+|++-|++.| ++||||.-...+
T Consensus 131 ~~l~~~l~~I~~~AP~ArV---vvvgYp~~~~~~ 161 (259)
T cd01823 131 ARLKAVLDRIRERAPNARV---VVVGYPRLFPPD 161 (259)
T ss_pred HHHHHHHHHHHHHCCCCEE---EEECCCCCCCCC
T ss_conf 9999999999976899659---996387554899
No 284
>TIGR00269 TIGR00269 conserved hypothetical protein TIGR00269; InterPro: IPR000541 The following uncharacterised proteins have been shown to share regions of similarities, yeast chromosome VII hypothetical protein YGL211w; Dictyostelium discoideum (Slime mold) protein veg136; and Methanococcus jannaschii hypothetical proteins MJ1157 and MJ1478..
Probab=29.54 E-value=35 Score=13.67 Aligned_cols=54 Identities=17% Similarity=0.267 Sum_probs=28.7
Q ss_pred CCCEEEEEECCCHHHHHHHCCC-----C-CCCHHHH-HHHHHHHHCCCCCCCEEEECCCCC
Q ss_conf 2201332111457899873033-----3-4411467-899987401344320000013522
Q gi|255764472|r 288 MPYLHLPVQSGSDRILKSMNRR-----H-TAYEYRQ-IIDRIRSVRPDIAISSDFIVGFPG 341 (469)
Q Consensus 288 ~~~lhlpiQSgs~~vLk~M~R~-----~-~~e~~~~-~i~~~r~~~p~~~i~tdiIvGfPg 341 (469)
|||-|+|+-+.=.++|+.+--. | ..+-|.+ .+-.++...+...++--.++|+|.
T Consensus 31 CPYS~~S~R~~~~dfL~~le~~~pG~kfsvl~sf~ki~~~~~~~L~~~~~~~~C~~CGeP~ 91 (106)
T TIGR00269 31 CPYSSLSVRARIRDFLKDLEEKKPGVKFSVLRSFEKIKIILLKELSEKEELRRCERCGEPA 91 (106)
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 8889840358899999986303897023100004667777632114335565000147888
No 285
>TIGR03621 F420_MSMEG_2516 probable F420-dependent oxidoreductase, MSMEG_2516 family. Coenzyme F420 is produced by methanogenic archaea, a number of the Actinomycetes (including Mycobacterium tuberculosis), and rare members of other lineages. The resulting information-rich phylogenetic profile identifies candidate F420-dependent oxidoreductases within the family of luciferase-like enzymes (pfam00296), where the species range for the subfamily encompasses many F420-positive genomes without straying beyond. This family is uncharacterized, and named for member MSMEG_2516 from Mycobacterium smegmatis.
Probab=29.50 E-value=35 Score=13.67 Aligned_cols=30 Identities=13% Similarity=0.174 Sum_probs=20.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHCCCEEC
Q ss_conf 7999957985688789999999998798687
Q gi|255764472|r 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERV 56 (469)
Q Consensus 26 kv~i~TlGC~~N~~Dse~i~~~L~~~G~~~~ 56 (469)
||-| ++.|.-..-|--.++....+.||..+
T Consensus 2 ~~gi-~~~~~~~~~~~~~~a~~ae~~Gfd~~ 31 (295)
T TIGR03621 2 RFGI-ALEGPESARDWVDLARRAEDLGFDVL 31 (295)
T ss_pred EEEE-ECCCCCCHHHHHHHHHHHHHCCCCEE
T ss_conf 3467-47999999999999999998499899
No 286
>KOG0065 consensus
Probab=29.39 E-value=35 Score=13.65 Aligned_cols=117 Identities=19% Similarity=0.302 Sum_probs=67.0
Q ss_pred EEEECCCHHHHHHHC---CCCCCC--------HHHHHHHHHHHHCCCCCCCEEEEC-CCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 321114578998730---333441--------146789998740134432000001-35220124789886332210111
Q gi|255764472|r 293 LPVQSGSDRILKSMN---RRHTAY--------EYRQIIDRIRSVRPDIAISSDFIV-GFPGETDDDFRATMDLVDKIGYA 360 (469)
Q Consensus 293 lpiQSgs~~vLk~M~---R~~~~e--------~~~~~i~~~r~~~p~~~i~tdiIv-GfPgETeedf~~Tl~~i~~~~~~ 360 (469)
+|.|.+--++|+... |+.+.- ---.+.+-+-.+...-.+..|+.+ |+|-.- +.|+...-++++..
T Consensus 797 ~~~qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q-~tF~R~~GYvqQ~D-- 873 (1391)
T KOG0065 797 MPIQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ-ETFARVSGYVEQQD-- 873 (1391)
T ss_pred CCCCCCCEEHHHCCCEEECCCCEEEHHCCCCCCHHHHHHHHHCCCCCCEEEEEEEECCEECCH-HHHCCCCCEEECCC--
T ss_conf 223665037532584686478364012477876577999985674465687578988832736-65123101142256--
Q ss_pred HCCCHHEEECCCH---HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 0020000111201---232143688989999999999999999999999985797899
Q gi|255764472|r 361 QAFSFKYSPRLGT---PGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIE 415 (469)
Q Consensus 361 ~~~vf~yS~r~gT---~Aa~m~~qV~~~vk~~R~~~l~~~~~~~~~~~~~~~iG~~~~ 415 (469)
+|+-..+-|+-- .+-+.+.+|+.++|.+...+++++.+- .++.+..||...+
T Consensus 874 -iH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL--~~~~daiVG~~G~ 928 (1391)
T KOG0065 874 -IHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLEL--KEYADALVGLPGS 928 (1391)
T ss_pred -CCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCC--HHHHHHHCCCCCC
T ss_conf -567540419899999997187769978999999999998376--2566555068888
No 287
>TIGR03554 F420_G6P_DH glucose-6-phosphate dehydrogenase, F420-dependent. This family consists of the F420-dependent glucose-6-phosphate dehydrogenase of Mycobacterium and Nocardia. It shows homology to several other F420-dependent enzymes rather than to the NAD or NADP-dependent glucose-6-phosphate dehydrogenases.
Probab=29.36 E-value=35 Score=13.65 Aligned_cols=40 Identities=13% Similarity=0.269 Sum_probs=21.6
Q ss_pred CCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHH-HHH
Q ss_conf 344114678999874013443200000135220124789886332-210
Q gi|255764472|r 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV-DKI 357 (469)
Q Consensus 310 ~~~e~~~~~i~~~r~~~p~~~i~tdiIvGfPgETeedf~~Tl~~i-~~~ 357 (469)
.|+++..+.++.++++ |+ +.||+++||... .++++++ +++
T Consensus 286 GtPdevieki~~y~da--Gv---d~~il~~~g~d~---~~~ielf~~eV 326 (331)
T TIGR03554 286 SDPDEAVEQVGQYVDW--GL---NHLVFHAPGHDQ---RRFLELFQRDL 326 (331)
T ss_pred CCHHHHHHHHHHHHHC--CC---CEEEEECCCCCH---HHHHHHHHHHC
T ss_conf 9999999999999976--99---879995999887---99999999743
No 288
>TIGR00928 purB adenylosuccinate lyase; InterPro: IPR004769 A number of enzymes, belonging to the lyase class, for which fumarate is a substrate have been shown , to share a short conserved sequence around a methionine which is probably involved in the catalytic activity of this type of enzymes. Adenylosuccinate lyase is involved in purine ribonucleotide biosynthesis.; GO: 0004018 adenylosuccinate lyase activity, 0009152 purine ribonucleotide biosynthetic process.
Probab=29.33 E-value=35 Score=13.64 Aligned_cols=86 Identities=21% Similarity=0.186 Sum_probs=34.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEE-----ECCCCCCCCCCCHHHHHHHCCCCCCCCCCCC-
Q ss_conf 0012213764100588999887631013310587314541134-----1134443100021678862044430013544-
Q gi|255764472|r 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWR-----GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTT- 267 (469)
Q Consensus 194 ~ip~~RG~~rSr~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y~-----g~~~~~~~~~l~~Ll~~l~~i~~~~riR~~s- 267 (469)
..|.+-|.-=--=.++|.++.++|... ++-+..|.=.|.+| +..++|+...+.++=+.+.+.=|+.+.++|+
T Consensus 166 A~PtT~G~~~A~w~~E~~R~~~rL~~~--~~~~~vg~i~Ga~GT~a~~~~~~~G~~~~~~~~E~~V~~~LGL~~~~~stG 243 (469)
T TIGR00928 166 AEPTTLGKKFALWADEMKRQLERLKQA--KERIKVGGISGAVGTYAAAGPLGDGDRDWLEEVEERVTELLGLKPVPISTG 243 (469)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH--HHCCCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 344869999999999999999999988--861665742254214762344578857999999999998708722567476
Q ss_pred -CCCCCCCCHHHHHH
Q ss_conf -21000100036652
Q gi|255764472|r 268 -SHPRDMSDCLIKAH 281 (469)
Q Consensus 268 -~~P~~~~~~li~~~ 281 (469)
..|.+..-+++..+
T Consensus 244 Qi~~RD~~a~~~~~L 258 (469)
T TIGR00928 244 QIIQRDRHAELLDAL 258 (469)
T ss_pred CCCCCHHHHHHHHHH
T ss_conf 200004568999999
No 289
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=29.32 E-value=35 Score=13.64 Aligned_cols=61 Identities=18% Similarity=0.321 Sum_probs=28.5
Q ss_pred HHHHHHHH----HHHHHHCCCCEEEEECCC---------------CCEEEECCCCCCCCCCCHHHHHHHCCCC-C--CCC
Q ss_conf 05889998----876310133105873145---------------4113411344431000216788620444-3--001
Q gi|255764472|r 206 SLSQVVDE----ARKLIDNGVCEITLLGQN---------------VNAWRGKGLDGEKCTFSDLLYSLSEIKG-L--VRL 263 (469)
Q Consensus 206 ~~~~Iv~e----i~~l~~~G~kEi~L~g~d---------------~~~Y~g~~~~~~~~~l~~Ll~~l~~i~~-~--~ri 263 (469)
.+++|++. ++...+.|+.=|-|.+-+ +-.| |..+.+.-.-+.++++++.+.-| . ..+
T Consensus 138 eI~~ii~~f~~AA~rA~~AGfDGVEIH~ahGyLl~qFLSp~~N~RtDeY-GGSlENR~Rf~~Eii~aVr~~vg~df~vg~ 216 (361)
T cd04747 138 DIDDVIAAFARAAADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGY-GGSLAARSRFAAEVVKAIRAAVGPDFPIIL 216 (361)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCC-CCCHHHHCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 9999999999999999983999899510446589983587438898878-998798473699999999997299875999
Q ss_pred CCCC
Q ss_conf 3544
Q gi|255764472|r 264 RYTT 267 (469)
Q Consensus 264 R~~s 267 (469)
|++.
T Consensus 217 Ris~ 220 (361)
T cd04747 217 RFSQ 220 (361)
T ss_pred EECC
T ss_conf 9677
No 290
>KOG4241 consensus
Probab=29.20 E-value=35 Score=13.63 Aligned_cols=36 Identities=22% Similarity=0.330 Sum_probs=19.1
Q ss_pred EEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCE
Q ss_conf 32111457899873033344114678999874013443200
Q gi|255764472|r 293 LPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISS 333 (469)
Q Consensus 293 lpiQSgs~~vLk~M~R~~~~e~~~~~i~~~r~~~p~~~i~t 333 (469)
.|+=+|+..||= --+.+...+++...|+. |-+.+-.
T Consensus 140 ~plfvgnh~ill----~~d~~kik~~lri~r~v-P~~~llg 175 (245)
T KOG4241 140 NPLFVGNHAILL----AKDISKIKSILRITRKV-PLVMLLG 175 (245)
T ss_pred HHHEECCCEEEE----CCCHHHHHHHHHHHHHC-CHHEECC
T ss_conf 211144613797----28768999999998626-4001316
No 291
>TIGR01405 polC_Gram_pos DNA polymerase III, alpha subunit, Gram-positive type; InterPro: IPR006308 These are the polypeptide chains of DNA polymerase III. Full-length homologs of this protein are restricted to the Gram-positive lineages, including the Mycoplasmas. This protein is designated alpha chain and given the gene symbol polC, but is not a full-length homolog of other polC genes. The N-terminal region of about 200 amino acids is rich in low-complexity sequence and poorly alignable. ; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0005737 cytoplasm.
Probab=28.74 E-value=35 Score=13.64 Aligned_cols=19 Identities=37% Similarity=0.592 Sum_probs=7.2
Q ss_pred HHHHHHHHCCCCEEEEECC
Q ss_conf 9887631013310587314
Q gi|255764472|r 212 DEARKLIDNGVCEITLLGQ 230 (469)
Q Consensus 212 ~ei~~l~~~G~kEi~L~g~ 230 (469)
+|.++.+..|+-=|.|++|
T Consensus 660 KEL~sII~nGF~ViYlIS~ 678 (1264)
T TIGR01405 660 KELKSIIGNGFAVIYLISQ 678 (1264)
T ss_pred HHHHHHHHCCHHHHHHHHH
T ss_conf 8745654066267789999
No 292
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase; InterPro: IPR011895 The oxidative decarboxylation of pyruvate to acetyl-CoA, a central step in energy metabolism, can occur by two different mechanisms . In mitochondria and aerobic bacteria this reaction is catalysed by the multienzyme complex pyruvate dehydrogenase using NAD as electron acceptor. In anaerobic organisms, however, this reaction is reversibly catalysed by a single enzyme using either ferrodoxin or flavodoxin as the electron acceptor. Pyruvate:ferrodoxin/flavodoxin reductases (PFORs) in this entry occur in both obligately and facultatively anaerobic bacteria and also some eukaryotic microorganisms. These proteins are single-chain enzymes containing a thiamin pyrophosphate cofactor for the cleavage of carbon-carbon bonds next to a carbonyl group, and iron-sulphur clusters for electron transfer. The Desulfovibrio africanus enzyme is currently the only PFOR whose three dimensional structure is known , . It is a homodimer where each subunit contains one thiamin pyrophosphate cofactor and two ferrodoxin-like 4Fe-S clusters and an atypical 4Fe-S cluster. Each monomer is composed of seven domains - domains I, II and VI make intersubunit contacts, while domains III, IV and V are located at the suface of the dimer, and domain VII forms a long arm extending over the other subunit. The cofactor is bound at the interface of domains I and VI and is proximal to the atypical 4Fe-S bound by domain VI, while the ferrodoxin-like 4Fe-S clusters are bound by domain V. Comparison of this enzyme with the multi-chain PFORs shows a correspondance between the domains in this enzyme and the subunits of the multi-chain enzymes.; GO: 0005506 iron ion binding, 0016903 oxidoreductase activity acting on the aldehyde or oxo group of donors, 0006118 electron transport.
Probab=28.69 E-value=11 Score=17.45 Aligned_cols=34 Identities=15% Similarity=0.133 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHCCCEEEEEE
Q ss_conf 8999999999999999999---9999985797899998
Q gi|255764472|r 384 ENVKAERLLCLQKKLREQQ---VSFNDACVGQIIEVLI 418 (469)
Q Consensus 384 ~~vk~~R~~~l~~~~~~~~---~~~~~~~iG~~~~Vlv 418 (469)
....++|+..|..+..+.. ... -+.|....+.+|
T Consensus 942 ~~~~k~~~~klk~~L~~~k~~G~~l-l~~i~~~~D~fv 978 (1194)
T TIGR02176 942 IEKSKERAAKLKKLLAGEKTKGDDL-LKEIYAVKDLFV 978 (1194)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHH-HHHHHHHCCCCC
T ss_conf 0789999999999998448886168-986522026641
No 293
>PRK13114 consensus
Probab=28.52 E-value=36 Score=13.55 Aligned_cols=36 Identities=19% Similarity=0.247 Sum_probs=17.6
Q ss_pred CHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHH
Q ss_conf 11467899987401344320000013522012478988633
Q gi|255764472|r 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353 (469)
Q Consensus 313 e~~~~~i~~~r~~~p~~~i~tdiIvGfPgETeedf~~Tl~~ 353 (469)
+...+.++++|+.. ..-+.|||==-|.|+.++..++
T Consensus 187 ~~~~~~i~~ik~~t-----~~Pv~vGFGIs~~e~~~~~~~~ 222 (266)
T PRK13114 187 ASIEAAVARIKAAT-----DLPVAVGFGVRTPEQAAAIARV 222 (266)
T ss_pred HHHHHHHHHHHHHC-----CCCEEEECCCCCHHHHHHHHHC
T ss_conf 88999999999707-----9986998366989999999800
No 294
>TIGR01926 peroxid_rel uncharacterized peroxidase-related enzyme; InterPro: IPR010195 Members of this family are conserved hypothetical proteins of around 200 amino acids in length. Many of them contain an akylhydroperoxidase (AhpD) domain. .
Probab=28.48 E-value=30 Score=14.18 Aligned_cols=63 Identities=16% Similarity=0.142 Sum_probs=29.5
Q ss_pred EEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCCCHHHHHHHCCCC
Q ss_conf 74123324468111001221376410058899988763101331058731454113411344431000216788620444
Q gi|255764472|r 180 LTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKG 259 (469)
Q Consensus 180 ikI~~GC~~~CsfC~ip~~RG~~rSr~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y~g~~~~~~~~~l~~Ll~~l~~i~~ 259 (469)
+-+.----++|.||.+-++ ++++...=+..+ ++.++.+ |...++.....-+.+.-.+|..-|+
T Consensus 70 ~Avv~S~~N~C~YCa~~H~-~~~~~~~g~~~~--~d~~~~n--------------~~~a~l~~re~A~~~fA~~Lt~~P~ 132 (179)
T TIGR01926 70 IAVVVSRVNGCVYCAAVHA-ARLRQLSGDPDV--ADAVAVN--------------IRDADLSPRERAMLDFAVKLTATPA 132 (179)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHCCHHH--HHHHHHC--------------HHCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 9998766522588898799-999987089888--9998615--------------0004799889999999999870851
No 295
>TIGR03557 F420_G6P_family F420-dependent oxidoreductase, G6PDH family. Members of this protein family include F420-dependent glucose-6-phosphate dehydrogenases (TIGR03554) and related proteins. All members of this family come from species that synthesize coenzyme F420.
Probab=28.16 E-value=36 Score=13.50 Aligned_cols=14 Identities=0% Similarity=-0.102 Sum_probs=6.1
Q ss_pred CCCHHHHHHHHHHH
Q ss_conf 44114678999874
Q gi|255764472|r 311 TAYEYRQIIDRIRS 324 (469)
Q Consensus 311 ~~e~~~~~i~~~r~ 324 (469)
++++..+.+..+.+
T Consensus 271 ~Pe~v~~~i~~~~d 284 (316)
T TIGR03557 271 DPDRHVEAVREYVD 284 (316)
T ss_pred CHHHHHHHHHHHHH
T ss_conf 99999999999997
No 296
>PRK13120 consensus
Probab=28.12 E-value=36 Score=13.50 Aligned_cols=39 Identities=13% Similarity=0.022 Sum_probs=23.1
Q ss_pred CCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 44114678999874013443200000135220124789886332
Q gi|255764472|r 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLV 354 (469)
Q Consensus 311 ~~e~~~~~i~~~r~~~p~~~i~tdiIvGfPgETeedf~~Tl~~i 354 (469)
..++..+.+.++|+.. ..-+-|||==-|.|+.++...+.
T Consensus 193 ~~~~l~~~i~~ik~~t-----~~Pv~vGFGIs~~e~v~~~~~~A 231 (285)
T PRK13120 193 DTDDVARKLALIRRHV-----HIPVGVGFGIRDAASAQRIAAHA 231 (285)
T ss_pred CHHHHHHHHHHHHHCC-----CCCEEEEECCCCHHHHHHHHCCC
T ss_conf 6688999999999726-----99759996259899999997029
No 297
>pfam01645 Glu_synthase Conserved region in glutamate synthase. This family represents a region of the glutamate synthase protein. This region is expressed as a separate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.
Probab=27.97 E-value=37 Score=13.48 Aligned_cols=60 Identities=22% Similarity=0.164 Sum_probs=40.1
Q ss_pred CCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEECCCHHHHH
Q ss_conf 34411467899987401344320000013522012478988633221011100200001112012321
Q gi|255764472|r 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377 (469)
Q Consensus 310 ~~~e~~~~~i~~~r~~~p~~~i~tdiIvGfPgETeedf~~Tl~~i~~~~~~~~~vf~yS~r~gT~Aa~ 377 (469)
|+.++..++|..+|+..++.-++.-+-+|-+-|+... .+-+..+|.+.|--. .=||-|+-
T Consensus 184 ~s~edL~~~I~~Lr~~~~~~PVgvKl~~~~~~~~ia~------~~aka~~D~I~IdG~--eGGTGAaP 243 (367)
T pfam01645 184 YSIEDLAQLIYDLKEINPKAPISVKLVSGHGVGTIAA------GVAKAGADIILIDGH--DGGTGASP 243 (367)
T ss_pred CCHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHH------HHHCCCCCEEEECCC--CCCCCCCC
T ss_conf 9999999999999841789945999814776899999------875367888997178--98677554
No 298
>PRK13669 hypothetical protein; Provisional
Probab=27.96 E-value=23 Score=14.95 Aligned_cols=39 Identities=18% Similarity=0.480 Sum_probs=24.0
Q ss_pred ECCCCCCCCCCCC-HHHH--HHHH-HHHHHHHHHHHHHHHHHC
Q ss_conf 1233244681110-0122--1376-410058899988763101
Q gi|255764472|r 182 IQEGCDKFCTFCV-VPYT--RGIE-ISRSLSQVVDEARKLIDN 220 (469)
Q Consensus 182 I~~GC~~~CsfC~-ip~~--RG~~-rSr~~~~Iv~ei~~l~~~ 220 (469)
+.-||...|.-|. .||+ -|+. .--.+|+.++.|...++.
T Consensus 32 ~eygCL~~CG~C~~~pfALVnGe~V~a~t~EeL~~~I~~~Iee 74 (78)
T PRK13669 32 LEYGCLTYCGICSEGLFALVNGEVVEGETPEELVENIYAHIEE 74 (78)
T ss_pred EECCHHHHHHHHCCCCEEEECCEEEECCCHHHHHHHHHHHHHH
T ss_conf 8706665521021485358888688549999999999999862
No 299
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=27.83 E-value=24 Score=14.84 Aligned_cols=39 Identities=23% Similarity=0.344 Sum_probs=24.7
Q ss_pred CHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHH
Q ss_conf 0036652022111220133211145789987303334411467899
Q gi|255764472|r 275 DCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIID 320 (469)
Q Consensus 275 ~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~ 320 (469)
+.+.+.+++..-.++|+| |..|+.||++||..++.+.+.
T Consensus 355 ~~I~e~L~kqRDmy~yiH-------DQTLrL~NqG~T~~eI~~~~~ 393 (655)
T COG2015 355 AHINEFLGKQRDMYKYIH-------DQTLRLANQGYTGNEIADMIQ 393 (655)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHCCCCHHHHHHHHC
T ss_conf 789999998788988888-------889998736863788888853
No 300
>cd00245 Glm_e Coenzyme B12-dependent glutamate mutase epsilon subunit-like family; contains proteins similar to Clostridium cochlearium glutamate mutase (Glm) and Streptomyces tendae Tu901 NikV. Glm catalyzes a carbon-skeleton rearrangement of L-glutamate to L-threo-3-methylaspartate. The first step in the catalysis is a homolytic cleavage of the Co-C bond of the coenzyme B12 cofactor to generate a 5'-deoxyadenosyl radical. This radical then initiates the rearrangement reaction. C. cochlearium Glm is a sigma2epsilon2 heterotetramer. Glm plays a role in glutamate fermentation in Clostridium sp. and in members of the family Enterobacteriaceae, and in the synthesis of the lipopeptide antibiotic friulimicin in Actinoplanes friuliensis. S. tendae Tu901 glutamate mutase-like proteins NikU and NIkV participate in the synthesis of the peptidyl nucleoside antibiotic nikkomycin. NikU and NikV proteins have sequence similarity to Clostridium Glm sigma and epsilon components respectively, and may
Probab=27.75 E-value=37 Score=13.45 Aligned_cols=20 Identities=15% Similarity=0.458 Sum_probs=9.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8111001221376410058899988
Q gi|255764472|r 190 CTFCVVPYTRGIEISRSLSQVVDEA 214 (469)
Q Consensus 190 CsfC~ip~~RG~~rSr~~~~Iv~ei 214 (469)
-|||+ |+. ++.|+++-++.-
T Consensus 130 ISYnl-PYs----k~vpLe~si~~W 149 (428)
T cd00245 130 ISYNL-PYS----KNVPLEKSIENW 149 (428)
T ss_pred CEECC-CCC----CCCCHHHHHHHH
T ss_conf 02236-667----888889999999
No 301
>PRK13116 consensus
Probab=27.65 E-value=32 Score=13.95 Aligned_cols=15 Identities=13% Similarity=0.326 Sum_probs=6.3
Q ss_pred EECCCCCCHHHHHHH
Q ss_conf 001352201247898
Q gi|255764472|r 335 FIVGFPGETDDDFRA 349 (469)
Q Consensus 335 iIvGfPgETeedf~~ 349 (469)
+.|||==-|.++..+
T Consensus 209 v~vGFGIs~~e~v~~ 223 (278)
T PRK13116 209 ILLGFGISSPQHVAD 223 (278)
T ss_pred EEEECCCCCHHHHHH
T ss_conf 799816798999999
No 302
>PRK10401 DNA-binding transcriptional regulator GalS; Provisional
Probab=27.53 E-value=37 Score=13.43 Aligned_cols=20 Identities=30% Similarity=0.413 Sum_probs=15.6
Q ss_pred HHHHHHHHCCCCEEEEECCC
Q ss_conf 98876310133105873145
Q gi|255764472|r 212 DEARKLIDNGVCEITLLGQN 231 (469)
Q Consensus 212 ~ei~~l~~~G~kEi~L~g~d 231 (469)
.-+++|++.|+|.|.++|-.
T Consensus 166 ~a~~~L~~~GhrrI~~i~~~ 185 (346)
T PRK10401 166 MATRMLLNNGHQRIGYLSSS 185 (346)
T ss_pred HHHHHHHHCCCCCEEEEECC
T ss_conf 99999996299828999479
No 303
>TIGR02041 CysI sulfite reductase (NADPH) hemoprotein, beta-component; InterPro: IPR011786 Sulphite reductase (NADPH) catalyzes a six electron reduction of sulphite to sulphide in prokaryotic organisms. It is a complex oligomeric enzyme composed of two different peptides with a subunit composition of alpha(8)-beta(4). The alpha component, encoded by cysJ, is a flavoprotein containing both FMN and FAD, while the beta component, encoded by cysI, is a siroheme, iron-sulphur protein.; GO: 0004783 sulfite reductase (NADPH) activity, 0050661 NADP binding, 0051539 4 iron 4 sulfur cluster binding, 0008652 amino acid biosynthetic process, 0009337 sulfite reductase complex (NADPH).
Probab=27.43 E-value=19 Score=15.67 Aligned_cols=82 Identities=18% Similarity=0.206 Sum_probs=34.8
Q ss_pred CCCCCEE---EECCCCCCHHHHHHHHHHHHHHHHHHHC-CCHHEEECCCHHH-HHCCCCCCHHHHH-HH-HHHHHHHHHH
Q ss_conf 4432000---0013522012478988633221011100-2000011120123-2143688989999-99-9999999999
Q gi|255764472|r 328 DIAISSD---FIVGFPGETDDDFRATMDLVDKIGYAQA-FSFKYSPRLGTPG-SNMLEQVDENVKA-ER-LLCLQKKLRE 400 (469)
Q Consensus 328 ~~~i~td---iIvGfPgETeedf~~Tl~~i~~~~~~~~-~vf~yS~r~gT~A-a~m~~qV~~~vk~-~R-~~~l~~~~~~ 400 (469)
++-|+.. ||.+-|.......+ ++++++.+..- ++.. -|...-| -+|| ..|=.-.. || +-.+....++
T Consensus 379 dfRiT~NQNlIiA~V~e~~K~~Ie---~l~~~yGL~~g~~~t~--LR~~smaCValP-TCpLAMAEAER~LP~Fi~~~~~ 452 (550)
T TIGR02041 379 DFRITSNQNLIIANVPEGGKAKIE---ALARQYGLIDGKKVTA--LRRNSMACVALP-TCPLAMAEAERYLPDFIDKLDN 452 (550)
T ss_pred CEEECCCCCEEEECCCCHHHHHHH---HHHHHHCCCCCCCCHH--HHHHCCCEECCC-CCHHHHHHHHHHHHHHHHHHHH
T ss_conf 753447763788427842368899---9999818767864115--676277444467-7523699997455899999999
Q ss_pred HHHHHHHHHCCCEEEEEEEC
Q ss_conf 99999998579789999842
Q gi|255764472|r 401 QQVSFNDACVGQIIEVLIEK 420 (469)
Q Consensus 401 ~~~~~~~~~iG~~~~Vlve~ 420 (469)
+. +++ |-.-+.+|-.
T Consensus 453 i~----~k~-Gl~~~~I~~R 467 (550)
T TIGR02041 453 IM----EKH-GLADEEIVLR 467 (550)
T ss_pred HH----HHC-CCCCCEEEEE
T ss_conf 99----960-8887607898
No 304
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=27.37 E-value=38 Score=13.41 Aligned_cols=21 Identities=33% Similarity=0.412 Sum_probs=15.7
Q ss_pred HHHHHHHHCCCCEEEEECCCC
Q ss_conf 988763101331058731454
Q gi|255764472|r 212 DEARKLIDNGVCEITLLGQNV 232 (469)
Q Consensus 212 ~ei~~l~~~G~kEi~L~g~d~ 232 (469)
.-+++|.+.|+|.|.+++-+.
T Consensus 110 ~a~~~L~~~G~~~I~~i~~~~ 130 (268)
T cd06271 110 QAVRRLIALGHRRIALLNPPE 130 (268)
T ss_pred HHHHHHHHHCCCEEEECCCCC
T ss_conf 999999985987487548875
No 305
>KOG1522 consensus
Probab=27.30 E-value=16 Score=16.09 Aligned_cols=13 Identities=54% Similarity=1.359 Sum_probs=11.4
Q ss_pred CCCCCCCCCHHHH
Q ss_conf 2446811100122
Q gi|255764472|r 186 CDKFCTFCVVPYT 198 (469)
Q Consensus 186 C~~~CsfC~ip~~ 198 (469)
|..+|.+|++++.
T Consensus 88 C~~~C~eCSVef~ 100 (285)
T KOG1522 88 CDEFCPECSVEFT 100 (285)
T ss_pred HHCCCCCCEEEEE
T ss_conf 2014876437999
No 306
>PRK09271 flavodoxin; Provisional
Probab=27.21 E-value=38 Score=13.39 Aligned_cols=70 Identities=17% Similarity=0.144 Sum_probs=39.7
Q ss_pred HHHHHHHHHHCCCEEC----C---------CCCCCCEEEEECCCCCH-HHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 9999999998798687----7---------60108899992783250-79999999999999876766421898189996
Q gi|255764472|r 41 SLRMEDMFFSQGYERV----N---------SMDDADLIVLNTCHIRE-KAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVA 106 (469)
Q Consensus 41 se~i~~~L~~~G~~~~----~---------~~~~ADviiINTCsV~~-~ae~k~~~~i~~~~~~~~~~~k~~p~~~IvVt 106 (469)
+++|...|.+.|+++. + +.++.|++|+-|=|--+ ..-.++......+..+ .. .+.++.|-
T Consensus 18 A~~I~~~l~~~G~eV~~~e~d~~~~~~~~~d~~~yDl~llG~yTwgdG~lPdE~~DF~e~L~~~---dl---~gk~~avF 91 (160)
T PRK09271 18 ARMIAARCEEAGHAVTWVETDLQTLAQAPLDPEEYDLFLLGTWTDNAGRTPPEMKRFIAELVET---IG---KPPNVAVF 91 (160)
T ss_pred HHHHHHHHHHCCCEEEEEEECCHHHHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHH---CC---CCCEEEEE
T ss_conf 9999999997698237987010232203356111888999657048998966789999999860---45---68769998
Q ss_pred CCCCCCCHHH
Q ss_conf 4730108788
Q gi|255764472|r 107 GCVAQAEGEE 116 (469)
Q Consensus 107 GC~aq~~~e~ 116 (469)
||-=+.++++
T Consensus 92 GsGDt~y~~e 101 (160)
T PRK09271 92 GTGETQWGEE 101 (160)
T ss_pred CCCCCCCCCH
T ss_conf 7777765644
No 307
>TIGR03564 F420_MSMEG_4879 F420-dependent oxidoreductase, MSMEG_4879 family. Coenzyme F420 is produced by methanogenic archaea, a number of the Actinomycetes (including Mycobacterium tuberculosis), and rare members of other lineages. The resulting information-rich phylogenetic profile identifies candidate F420-dependent oxidoreductases within the family of luciferase-like enzymes (pfam00296), where the species range for the subfamily encompasses many F420-positive genomes without straying beyond. This family is uncharacterized, and named for member MSMEG_4879 from Mycobacterium smegmatis.
Probab=27.04 E-value=38 Score=13.37 Aligned_cols=14 Identities=21% Similarity=0.337 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHC
Q ss_conf 58899988763101
Q gi|255764472|r 207 LSQVVDEARKLIDN 220 (469)
Q Consensus 207 ~~~Iv~ei~~l~~~ 220 (469)
.++-++-++.+.+.
T Consensus 99 ~~E~l~~ir~l~~g 112 (265)
T TIGR03564 99 LREYLTVLRPLLAG 112 (265)
T ss_pred HHHHHHHHHHHHCC
T ss_conf 98899999999718
No 308
>TIGR01978 sufC FeS assembly ATPase SufC; InterPro: IPR010230 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] . FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins , . It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly . The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA . SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA , acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins . Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen . This entry represents SufC, which acts as an ATPase in the SUF system. SufC belongs to the ATP-binding cassette transporter family (IPR003439 from INTERPRO) but is no longer thought to be part of a transporter. The complex is reported as cytosolic or associated with the membrane.; GO: 0005524 ATP binding, 0006810 transport.
Probab=27.00 E-value=38 Score=13.37 Aligned_cols=46 Identities=22% Similarity=0.240 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEECCCHHHHH
Q ss_conf 467899987401344320000013522012478988633221011100200001112012321
Q gi|255764472|r 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSN 377 (469)
Q Consensus 315 ~~~~i~~~r~~~p~~~i~tdiIvGfPgETeedf~~Tl~~i~~~~~~~~~vf~yS~r~gT~Aa~ 377 (469)
+.+.|+++|+--|+.++= ||.=|+ ++++.++||+|||.- .|+-+.+
T Consensus 186 V~~~in~lr~~~P~~~~l--iiTHY~-----------rlL~~I~PD~VhVl~----~GrIV~s 231 (248)
T TIGR01978 186 VAEGINRLREEHPDRAFL--IITHYQ-----------RLLNYIKPDVVHVLV----DGRIVKS 231 (248)
T ss_pred HHHHHHHHHCCCCCCEEE--EEECHH-----------HHHHHCCCCEEEEEE----CCEEEEE
T ss_conf 999999873068980089--987517-----------884131898899974----6758764
No 309
>KOG2749 consensus
Probab=26.85 E-value=38 Score=13.34 Aligned_cols=23 Identities=17% Similarity=0.352 Sum_probs=12.3
Q ss_pred CCCCEEEECCCCCCCCCCCHHHHHHHCCC
Q ss_conf 45411341134443100021678862044
Q gi|255764472|r 230 QNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258 (469)
Q Consensus 230 ~d~~~Y~g~~~~~~~~~l~~Ll~~l~~i~ 258 (469)
+|+..| -. +...+.|++.+....
T Consensus 217 InT~g~-i~-----~egy~~llhai~~f~ 239 (415)
T KOG2749 217 INTCGW-IE-----GEGYAALLHAIKAFE 239 (415)
T ss_pred EECCCE-EC-----CCCHHHHHHHHHHCC
T ss_conf 712631-41-----555899999999707
No 310
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=26.78 E-value=38 Score=13.33 Aligned_cols=164 Identities=13% Similarity=0.248 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCC-CHHHHHHHCCCCC-CCCCCCCCCCCCCCCHHHH
Q ss_conf 6410058899988763101331058731454113411344431000-2167886204443-0013544210001000366
Q gi|255764472|r 202 EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTF-SDLLYSLSEIKGL-VRLRYTTSHPRDMSDCLIK 279 (469)
Q Consensus 202 ~rSr~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y~g~~~~~~~~~l-~~Ll~~l~~i~~~-~riR~~s~~P~~~~~~li~ 279 (469)
.-+....++-+|++.+.+.|+..+-+ |+. ++......+| ++.++.+.+.... .-+++...+|.. .++
T Consensus 10 il~ad~~~l~~~i~~l~~~g~~~lHi---DIm----DG~FVpn~t~g~~~v~~i~~~t~~~~DvHLMv~~P~~----~i~ 78 (220)
T PRK05581 10 ILSADFARLGEEVKAVEAAGADWIHV---DVM----DGHFVPNLTIGPPVVEAIRKVTKLPLDVHLMVENPDR----YVP 78 (220)
T ss_pred HHCCCHHHHHHHHHHHHHCCCCEEEE---ECC----CCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEECHHH----HHH
T ss_conf 74079999999999999769998999---575----7844775563999999998418996478999718888----799
Q ss_pred HHCCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHH--CCCCCCCEEEECCCCCCHHHHHHHHHHHHHHH
Q ss_conf 5202211122013321114578998730333441146789998740--13443200000135220124789886332210
Q gi|255764472|r 280 AHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV--RPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357 (469)
Q Consensus 280 ~~~~~~~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~~~r~~--~p~~~i~tdiIvGfPgETeedf~~Tl~~i~~~ 357 (469)
.+.+.+ +..+.+.+++.+ +..+.++.+|+. .+|+++. |+-.-+.++..++.+
T Consensus 79 ~~~~~g--~d~I~~H~Ea~~--------------~~~~~i~~ik~~g~k~Glaln-------p~T~~~~l~~~l~~i--- 132 (220)
T PRK05581 79 DFAKAG--ADIITFHVEASE--------------HIHRLLQLIKEAGIKAGLVLN-------PATPLEYLEYVLPLL--- 132 (220)
T ss_pred HHHHCC--CCEEEECCCCCC--------------CHHHHHHHHHHCCCCEEEEEC-------CCCCHHHHHHHHHHH---
T ss_conf 999739--988998167502--------------799999999974997046766-------999989999998741---
Q ss_pred HHHHCCCHHEEECCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEC
Q ss_conf 111002000011120123214368898999999999999999999999998579789999842
Q gi|255764472|r 358 GYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 (469)
Q Consensus 358 ~~~~~~vf~yS~r~gT~Aa~m~~qV~~~vk~~R~~~l~~~~~~~~~~~~~~~iG~~~~Vlve~ 420 (469)
|.+-+. |-.||....+|. +. .-+|.++++++..+ -|....+.|++
T Consensus 133 --D~VlvM--tV~PGf~GQ~f~---~~--~l~ki~~l~~~~~~---------~~~~~~I~VDG 177 (220)
T PRK05581 133 --DLVLLM--SVNPGFGGQKFI---PE--VLEKIREVRKLIDE---------RGLDILIEVDG 177 (220)
T ss_pred --CEEEEE--EECCCCCCCCCC---HH--HHHHHHHHHHHHHH---------CCCCEEEEEEC
T ss_conf --525899--865887876455---66--99999999999984---------59975599978
No 311
>cd01173 pyridoxal_pyridoxamine_kinase Pyridoxal kinase plays a key role in the synthesis of the active coenzyme pyridoxal-5'-phosphate (PLP), by catalyzing the phosphorylation of the precursor vitamin B6 in the presence of Zn2+ and ATP. Mammals are unable to synthesize PLP de novo and require its precursors in the form of vitamin B6 (pyridoxal, pyridoxine, and pyridoxamine) from their diet. Pyridoxal kinase encoding genes are also found in many other species including yeast and bacteria.
Probab=26.71 E-value=38 Score=13.32 Aligned_cols=28 Identities=18% Similarity=0.234 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 0588999887631013310587314541
Q gi|255764472|r 206 SLSQVVDEARKLIDNGVCEITLLGQNVN 233 (469)
Q Consensus 206 ~~~~Iv~ei~~l~~~G~kEi~L~g~d~~ 233 (469)
..+++.+-++.|.+.|.+.+++||.+..
T Consensus 157 ~~~~~~~aa~~L~~~g~~~Vvitg~~~~ 184 (254)
T cd01173 157 DLEDAKAAARALHAKGPKTVVVTSVELA 184 (254)
T ss_pred CHHHHHHHHHHHHHHCCCEEEECCCCCC
T ss_conf 9999999999999708999999986578
No 312
>PRK13124 consensus
Probab=25.96 E-value=40 Score=13.23 Aligned_cols=15 Identities=27% Similarity=0.379 Sum_probs=6.8
Q ss_pred EECCCCCCHHHHHHH
Q ss_conf 001352201247898
Q gi|255764472|r 335 FIVGFPGETDDDFRA 349 (469)
Q Consensus 335 iIvGfPgETeedf~~ 349 (469)
+.|||==-|.||.++
T Consensus 198 v~vGFGI~~~e~v~~ 212 (257)
T PRK13124 198 VAVGFGISTPEQVQK 212 (257)
T ss_pred EEEEECCCCHHHHHH
T ss_conf 389844699999999
No 313
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=25.62 E-value=40 Score=13.19 Aligned_cols=27 Identities=19% Similarity=0.119 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 899999999999999999999999857
Q gi|255764472|r 384 ENVKAERLLCLQKKLREQQVSFNDACV 410 (469)
Q Consensus 384 ~~vk~~R~~~l~~~~~~~~~~~~~~~i 410 (469)
++....|...|.+-+....-+...+++
T Consensus 946 delI~~R~~~Lt~YQn~~YA~rY~~~V 972 (1155)
T PRK09193 946 DELIARRVAFLTAYQNAAYAARYRALV 972 (1155)
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 999999999999805999999999999
No 314
>PRK13123 consensus
Probab=25.47 E-value=40 Score=13.17 Aligned_cols=36 Identities=14% Similarity=0.242 Sum_probs=21.0
Q ss_pred CHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHH
Q ss_conf 11467899987401344320000013522012478988633
Q gi|255764472|r 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353 (469)
Q Consensus 313 e~~~~~i~~~r~~~p~~~i~tdiIvGfPgETeedf~~Tl~~ 353 (469)
++..+.++++|+..+ .-+.|||==-|.++.++...+
T Consensus 186 ~~~~~~i~~ik~~t~-----~Pv~vGFGIs~~e~v~~~~~~ 221 (256)
T PRK13123 186 DDLDSHLEKLKSIAH-----IPVLAGFGISTLEDVERFNAV 221 (256)
T ss_pred HHHHHHHHHHHHCCC-----CCEEEECCCCCHHHHHHHHHH
T ss_conf 889999999985689-----987997688999999999713
No 315
>TIGR01515 branching_enzym 1,4-alpha-glucan branching enzyme; InterPro: IPR006407 This entry represents the core region of the glycogen branching enzymes, which are responsible for the transfer of chains of approximately seven alpha(1,4)-linked glucosyl residues to other similar chains (in new alpha-(1,6) linkages) in the biosynthesis of glycogen . The branching enzyme is responsible for the degree of alpha(1,6) branch linkages found in polysaccharides .; GO: 0003844 14-alpha-glucan branching enzyme activity, 0005978 glycogen biosynthetic process.
Probab=25.36 E-value=41 Score=13.15 Aligned_cols=134 Identities=18% Similarity=0.329 Sum_probs=78.6
Q ss_pred CCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEE---------EECCCCCCCCCCC---HHHH
Q ss_conf 81110-----01221376410058899988763101331058731454113---------4113444310002---1678
Q gi|255764472|r 190 CTFCV-----VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAW---------RGKGLDGEKCTFS---DLLY 252 (469)
Q Consensus 190 CsfC~-----ip~~RG~~rSr~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y---------~g~~~~~~~~~l~---~Ll~ 252 (469)
--||- ||-.-|.----..-+.++++...+.+-+--|+-++.+-++| ||-|+. -|.|+. |.|+
T Consensus 298 ~DYsR~EGeW~pN~~gGrenL~Av~fL~~~N~~~~~~fpGv~~iAEeST~wP~Vt~p~~~GGLGF~-lKWNmGWMhD~L~ 376 (608)
T TIGR01515 298 LDYSREEGEWVPNEYGGRENLEAVDFLRKLNQTVYEAFPGVVTIAEESTEWPGVTRPTDEGGLGFN-LKWNMGWMHDTLD 376 (608)
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCC-CCCCCCCHHHHHH
T ss_conf 555565576078877688788999999998789873288569860136788686465015866556-5011666667887
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCC
Q ss_conf 86204443001354421000100036652022111220133211145789987303334411467899987401344320
Q gi|255764472|r 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332 (469)
Q Consensus 253 ~l~~i~~~~riR~~s~~P~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~~~r~~~p~~~i~ 332 (469)
-++. +..+| |+ |=..||=.++-+++++ -+.|.=|==|=||=..+|.+| +-|+-......|...
T Consensus 377 Y~~~-~P~~R-~y---Hh~~~tFs~lYafSEn-FvLplSHDEVVhGK~sll~kM-----PGD~WQkfA~~Rall------ 439 (608)
T TIGR01515 377 YMSL-DPVYR-QY---HHDKITFSMLYAFSEN-FVLPLSHDEVVHGKKSLLDKM-----PGDAWQKFANLRALL------ 439 (608)
T ss_pred HCCC-CCCHH-HH---CCCCCCHHHHHHHHHH-CCCCCCCCEEEECCHHHCCCC-----CCHHHHHHHHHHHHH------
T ss_conf 6079-46000-21---0231102444341021-124344751553636323678-----872789998778765------
Q ss_pred EEEECCCCCC
Q ss_conf 0000135220
Q gi|255764472|r 333 SDFIVGFPGE 342 (469)
Q Consensus 333 tdiIvGfPgE 342 (469)
.+|.-|||-
T Consensus 440 -GyM~~hPGK 448 (608)
T TIGR01515 440 -GYMWAHPGK 448 (608)
T ss_pred -HHHHHCCCC
T ss_conf -223213782
No 316
>COG0351 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism]
Probab=25.12 E-value=41 Score=13.12 Aligned_cols=22 Identities=18% Similarity=0.351 Sum_probs=9.4
Q ss_pred EECC-CCCCHHHHHHHHHHHHHH
Q ss_conf 0013-522012478988633221
Q gi|255764472|r 335 FIVG-FPGETDDDFRATMDLVDK 356 (469)
Q Consensus 335 iIvG-fPgETeedf~~Tl~~i~~ 356 (469)
.++| ++=+|++|.++-.+.+.+
T Consensus 145 ~L~g~~~i~~~~d~~~a~~~i~~ 167 (263)
T COG0351 145 ALSGLPKIKTEEDMKEAAKLLHE 167 (263)
T ss_pred HHCCCCCCCCHHHHHHHHHHHHH
T ss_conf 97199766999999999999998
No 317
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway . TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group .; GO: 0004789 thiamin-phosphate diphosphorylase activity, 0009228 thiamin biosynthetic process.
Probab=24.99 E-value=41 Score=13.10 Aligned_cols=131 Identities=18% Similarity=0.207 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCC-----CCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 58899988763101331058731454113411344-----4310002167886204443001354421000100036652
Q gi|255764472|r 207 LSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-----GEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAH 281 (469)
Q Consensus 207 ~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y~g~~~~-----~~~~~l~~Ll~~l~~i~~~~riR~~s~~P~~~~~~li~~~ 281 (469)
.++.++.++...+.|++=+ +||.++.+ ++...+.++.+++.++..-.-+ |.-++|++ ++-
T Consensus 14 ~~~~~~~ve~Al~GGV~~~--------QlR~K~~~~~~~yGE~~~~~~~A~~l~~lc~~y~~------~f~vND~v-dlA 78 (210)
T TIGR00693 14 LKDLLARVEAALKGGVTLV--------QLRDKGSNALQQYGETRERLELAEKLRELCRKYGV------PFIVNDRV-DLA 78 (210)
T ss_pred HHHHHHHHHHHHHCCCEEE--------EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC------CEEECCHH-HHH
T ss_conf 3448999999985896299--------98405875421258588999999999999987089------76882839-999
Q ss_pred CCCCCCCCCEEEEEECCCHHHHH-HHCCC----CCCCHHHHHHHHHH---HHCC-CCCCCEEEECCCCCCHHHH--HHHH
Q ss_conf 02211122013321114578998-73033----34411467899987---4013-4432000001352201247--8988
Q gi|255764472|r 282 GDLDVLMPYLHLPVQSGSDRILK-SMNRR----HTAYEYRQIIDRIR---SVRP-DIAISSDFIVGFPGETDDD--FRAT 350 (469)
Q Consensus 282 ~~~~~i~~~lhlpiQSgs~~vLk-~M~R~----~~~e~~~~~i~~~r---~~~p-~~~i~tdiIvGfPgETeed--f~~T 350 (469)
...+ .--+||+=+=.+..+.+ .|++. ++.....++..... +..+ .+.+++ =||+.|-+| --.+
T Consensus 79 ~~~~--ADGvHlGQ~D~p~~~aR~l~G~~~iiG~S~~~~~e~~~a~~C~~~~gaDY~G~Gp----~fpT~TK~~~~~~~g 152 (210)
T TIGR00693 79 LALG--ADGVHLGQDDLPVSEARKLLGPDKIIGVSTHNLEELAEAAACELKEGADYIGVGP----IFPTPTKKDAAPPVG 152 (210)
T ss_pred HHHC--CCEEEECCCCCCHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEECC----CCCCCCCCCCCCCCC
T ss_conf 9837--9877667888998999985389957985337989999999876407898888637----115887889877648
Q ss_pred HHHHHHHH
Q ss_conf 63322101
Q gi|255764472|r 351 MDLVDKIG 358 (469)
Q Consensus 351 l~~i~~~~ 358 (469)
+++++++.
T Consensus 153 ~e~l~~~~ 160 (210)
T TIGR00693 153 LELLREIA 160 (210)
T ss_pred HHHHHHHH
T ss_conf 88999999
No 318
>pfam05172 MPPN MPPN (rrm-like) domain. The MPPN (Mitotic PhosphoProtein N' end) family is uncharacterized however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins. This family also includes a suppressor of thermosensitive mutations in the DNA polymerase delta gene (Pol III). The conserved central region appears to be distantly related to the pfam00076 domain, suggesting an RNA binding function for this protein (Bateman A. pers obs).
Probab=24.99 E-value=40 Score=13.17 Aligned_cols=19 Identities=16% Similarity=0.268 Sum_probs=10.0
Q ss_pred HHHHHHHCCCCCCCEEEECCC
Q ss_conf 999874013443200000135
Q gi|255764472|r 319 IDRIRSVRPDIAISSDFIVGF 339 (469)
Q Consensus 319 i~~~r~~~p~~~i~tdiIvGf 339 (469)
-+.+++. |..++..+|+|-
T Consensus 57 ~rAL~~N--G~vl~g~~miGV 75 (87)
T pfam05172 57 RKALSKN--GTIINGSVMVGV 75 (87)
T ss_pred HHHHHHC--CEEECCCEEEEE
T ss_conf 9999957--969659789999
No 319
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=24.93 E-value=41 Score=13.10 Aligned_cols=40 Identities=25% Similarity=0.348 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHH
Q ss_conf 7999999999999987676642189818999647301087889874
Q gi|255764472|r 75 KAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRR 120 (469)
Q Consensus 75 ~ae~k~~~~i~~~~~~~~~~~k~~p~~~IvVtGC~aq~~~e~l~~~ 120 (469)
-.+++..+.|..+-+ +-+|++..|+|.|++..-++++...
T Consensus 68 Gg~~kL~~~I~~~~~------~y~P~~I~V~tTC~~eiIGDDi~~v 107 (430)
T cd01981 68 GSQEKVVENITRKDK------EEKPDLIVLTPTCTSSILQEDLQNF 107 (430)
T ss_pred CHHHHHHHHHHHHHH------HHCCCEEEEEECCHHHHHHHHHHHH
T ss_conf 659999999999998------4399768997144388763148889
No 320
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=24.88 E-value=28 Score=14.40 Aligned_cols=33 Identities=27% Similarity=0.322 Sum_probs=24.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHH---HHHHCCCC
Q ss_conf 44681110012213764100588999887---63101331
Q gi|255764472|r 187 DKFCTFCVVPYTRGIEISRSLSQVVDEAR---KLIDNGVC 223 (469)
Q Consensus 187 ~~~CsfC~ip~~RG~~rSr~~~~Iv~ei~---~l~~~G~k 223 (469)
+.-.-|| .||=.||.....+++++- ..++.|||
T Consensus 90 ~~~~iyC----wRGG~RS~~~~~~L~~~G~~v~~l~GGYK 125 (333)
T PRK11784 90 PRPLLYC----WRGGLRSGSVQQWLKEIGIDVPLLEGGYK 125 (333)
T ss_pred CCEEEEE----CCCCHHHHHHHHHHHHCCCCCCCCCCCHH
T ss_conf 9769997----36756689999999986997560376089
No 321
>pfam03464 eRF1_2 eRF1 domain 2. The release factor eRF1 terminates protein biosynthesis by recognising stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known. The overall shape and dimensions of eRF1 resemble a tRNA molecule with domains 1, 2, and 3 of eRF1 corresponding to the anticodon loop, aminoacyl acceptor stem, and T stem of a tRNA molecule, respectively. The position of the essential GGQ motif at an exposed tip of domain 2 suggests that the Gln residue coordinates a water molecule to mediate the hydrolytic activity at the peptidyl transferase centre. A conserved groove on domain 1, 80 A from the GGQ motif, is proposed to form the codon recognition site. This family also includes other proteins for which the precise molecular function is unknown. Many of them are from Archaebacteria. These proteins may also be involved in translation termination but this awaits exper
Probab=24.79 E-value=41 Score=13.08 Aligned_cols=42 Identities=19% Similarity=0.223 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 467899987401344320000013522012478988633221
Q gi|255764472|r 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDK 356 (469)
Q Consensus 315 ~~~~i~~~r~~~p~~~i~tdiIvGfPgETeedf~~Tl~~i~~ 356 (469)
|.++.+.+.+.+.+..----+|+|=||.|-++|.+-+.+--+
T Consensus 56 ~~~v~e~~~~~f~~~~~~k~IIlaGPGf~Kd~F~~~~~~~~~ 97 (131)
T pfam03464 56 YRKVAEAANQYFVDKDNVKGIILAGPGFFKNEFYDSDYLDYR 97 (131)
T ss_pred HHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHH
T ss_conf 999999999973354560189993875889999876776447
No 322
>PRK13131 consensus
Probab=24.66 E-value=42 Score=13.06 Aligned_cols=27 Identities=15% Similarity=0.077 Sum_probs=12.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCEE
Q ss_conf 9995798568878999999999879868
Q gi|255764472|r 28 FVKSYGCQMNVYDSLRMEDMFFSQGYER 55 (469)
Q Consensus 28 ~i~TlGC~~N~~Dse~i~~~L~~~G~~~ 55 (469)
-+.|.|-+ |.-.|..+...|.+.|-.+
T Consensus 15 ~yitaG~P-~~e~s~~~~~~l~~~Gadi 41 (257)
T PRK13131 15 PFVTLGDP-NYELSFEIIKTLIISGVSA 41 (257)
T ss_pred EEECCCCC-CHHHHHHHHHHHHHCCCCE
T ss_conf 88618689-9889999999999779999
No 323
>PRK13135 consensus
Probab=24.65 E-value=42 Score=13.06 Aligned_cols=32 Identities=19% Similarity=0.198 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHH
Q ss_conf 1467899987401344320000013522012478988
Q gi|255764472|r 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRAT 350 (469)
Q Consensus 314 ~~~~~i~~~r~~~p~~~i~tdiIvGfPgETeedf~~T 350 (469)
++.+.+.++|+.. ..-+.|||==-|.|+.++.
T Consensus 191 ~~~~~i~~ik~~t-----~~Pv~vGFGI~~~e~v~~i 222 (267)
T PRK13135 191 TVGGNVAKIREKI-----TVPVVVGFGISTPQQAADV 222 (267)
T ss_pred HHHHHHHHHHHHC-----CCCEEEEECCCCHHHHHHH
T ss_conf 8999999998606-----8984898167999999999
No 324
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=24.59 E-value=42 Score=13.05 Aligned_cols=17 Identities=24% Similarity=0.259 Sum_probs=6.7
Q ss_pred EECCCCCCHHHHHHHHH
Q ss_conf 00135220124789886
Q gi|255764472|r 335 FIVGFPGETDDDFRATM 351 (469)
Q Consensus 335 iIvGfPgETeedf~~Tl 351 (469)
+.|||==-|.||.+...
T Consensus 190 v~vGFGI~~~e~v~~~~ 206 (242)
T cd04724 190 IAVGFGISTPEQAAEVA 206 (242)
T ss_pred EEEECCCCCHHHHHHHH
T ss_conf 48743879999999999
No 325
>PRK05567 inositol-5'-monophosphate dehydrogenase; Reviewed
Probab=24.54 E-value=42 Score=13.05 Aligned_cols=20 Identities=20% Similarity=0.338 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHCCCCEEEE
Q ss_conf 88999887631013310587
Q gi|255764472|r 208 SQVVDEARKLIDNGVCEITL 227 (469)
Q Consensus 208 ~~Iv~ei~~l~~~G~kEi~L 227 (469)
++-.+.++.|++.|+.=|++
T Consensus 227 ~~~~eRa~~Lv~AGvDvivI 246 (486)
T PRK05567 227 ADNEERAEALVKAGVDVLVV 246 (486)
T ss_pred CCHHHHHHHHHHCCCCEEEE
T ss_conf 01899999999769988995
No 326
>PRK00870 haloalkane dehalogenase; Provisional
Probab=24.47 E-value=42 Score=13.04 Aligned_cols=31 Identities=16% Similarity=0.243 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHC-CCCEEEEECCCCCEE
Q ss_conf 0058899988763101-331058731454113
Q gi|255764472|r 205 RSLSQVVDEARKLIDN-GVCEITLLGQNVNAW 235 (469)
Q Consensus 205 r~~~~Iv~ei~~l~~~-G~kEi~L~g~d~~~Y 235 (469)
++++...+.+..+++. |+..+.|+|.|.|..
T Consensus 96 Yt~~~~a~~l~~lld~Lgl~~~~LVGhs~GG~ 127 (302)
T PRK00870 96 YTYARHVEWMRSWFEQLDLTGVTLVCQDWGGL 127 (302)
T ss_pred CCHHHHHHHHHHHHHHHCCCCEEEEEEECCCH
T ss_conf 79999999999999984998579999731608
No 327
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=24.45 E-value=42 Score=13.03 Aligned_cols=18 Identities=17% Similarity=0.206 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHCCCC
Q ss_conf 058899988763101331
Q gi|255764472|r 206 SLSQVVDEARKLIDNGVC 223 (469)
Q Consensus 206 ~~~~Iv~ei~~l~~~G~k 223 (469)
+.++|.+=++...++|++
T Consensus 66 T~~d~~eiv~yA~~rgI~ 83 (311)
T cd06570 66 TQEQIREVVAYARDRGIR 83 (311)
T ss_pred CHHHHHHHHHHHHHCCCE
T ss_conf 899999999999985998
No 328
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=24.30 E-value=42 Score=13.01 Aligned_cols=52 Identities=17% Similarity=0.324 Sum_probs=22.2
Q ss_pred CCCEEEEE----ECCCHHHHHHHCCCCCCCHHH----HHHHHHHHHCCCCCCCEEEECCC
Q ss_conf 22013321----114578998730333441146----78999874013443200000135
Q gi|255764472|r 288 MPYLHLPV----QSGSDRILKSMNRRHTAYEYR----QIIDRIRSVRPDIAISSDFIVGF 339 (469)
Q Consensus 288 ~~~lhlpi----QSgs~~vLk~M~R~~~~e~~~----~~i~~~r~~~p~~~i~tdiIvGf 339 (469)
.+|+||+- +.|--+-++..++....+-+. .+.+.+++.-+.+.+=.|++..+
T Consensus 132 s~~iHIGgDE~~~lg~~~~~~~~~~~~~~~l~~~~l~~v~~~~~~~g~~~~~W~Dml~~~ 191 (301)
T cd06565 132 SKYIHIGMDEAYDLGRGRSLRKHGNLGRGELYLEHLKKVLKIIKKRGPKPMMWDDMLRKL 191 (301)
T ss_pred CCEEEECCCCHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHCC
T ss_conf 970788885156515665578762689899999999999999997599188718976278
No 329
>PRK02271 methylenetetrahydromethanopterin reductase; Provisional
Probab=24.24 E-value=42 Score=13.01 Aligned_cols=51 Identities=16% Similarity=0.339 Sum_probs=30.4
Q ss_pred ECCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCC-CCHHHHHHHHHHHH
Q ss_conf 114578998730333441146789998740134432000001352-20124789886332
Q gi|255764472|r 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFP-GETDDDFRATMDLV 354 (469)
Q Consensus 296 QSgs~~vLk~M~R~~~~e~~~~~i~~~r~~~p~~~i~tdiIvGfP-gETeedf~~Tl~~i 354 (469)
+..+++++..+.=-.|+++..+.++.+++. |+ +.||+|+| |. |.+++++++
T Consensus 268 ~~~~~~~~~~~~l~Gtpe~v~~~l~~~~d~--Gv---d~i~~~~~~g~---~~~~~le~~ 319 (324)
T PRK02271 268 GLVTDAMIEAFSIAGTPDDVVEKIEDLLEA--GV---TQIVAGSPIGP---DKEKSIKLI 319 (324)
T ss_pred HHCCHHHHHCCEEECCHHHHHHHHHHHHHC--CC---CEEEEECCCCC---CHHHHHHHH
T ss_conf 409998881487878999999999999966--99---88998589997---989999999
No 330
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=23.97 E-value=43 Score=12.97 Aligned_cols=13 Identities=46% Similarity=0.698 Sum_probs=10.4
Q ss_pred ECCCHHHHHHHCC
Q ss_conf 1145789987303
Q gi|255764472|r 296 QSGSDRILKSMNR 308 (469)
Q Consensus 296 QSgs~~vLk~M~R 308 (469)
-||=+-++|.||.
T Consensus 251 tsGi~g~~~~~n~ 263 (340)
T COG4007 251 TSGIDGMLKALNP 263 (340)
T ss_pred HCCHHHHHHHCCH
T ss_conf 2260688885299
No 331
>PRK13117 consensus
Probab=23.64 E-value=40 Score=13.20 Aligned_cols=36 Identities=8% Similarity=0.292 Sum_probs=20.8
Q ss_pred CHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHH
Q ss_conf 11467899987401344320000013522012478988633
Q gi|255764472|r 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353 (469)
Q Consensus 313 e~~~~~i~~~r~~~p~~~i~tdiIvGfPgETeedf~~Tl~~ 353 (469)
++..+.++++|+.- ..-+.|||==-|.|+.++.++.
T Consensus 191 ~~~~~~i~~ik~~t-----~~Pv~vGFGIs~~e~v~~~~~~ 226 (268)
T PRK13117 191 APLNHLVEKLKEYN-----APPPLQGFGISEPEQVKAAIKA 226 (268)
T ss_pred HHHHHHHHHHHHCC-----CCCEEEEECCCCHHHHHHHHHC
T ss_conf 77999999999647-----9986998378999999999863
No 332
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=23.60 E-value=42 Score=13.05 Aligned_cols=28 Identities=21% Similarity=0.373 Sum_probs=12.6
Q ss_pred EEEEECCCCCCCHHHHHHHHCCCCCCCC
Q ss_conf 8999647301087889874100110011
Q gi|255764472|r 102 LVVVAGCVAQAEGEEILRRSPIVNVVVG 129 (469)
Q Consensus 102 ~IvVtGC~aq~~~e~l~~~~p~vd~vig 129 (469)
+|++.||-+|-...-+--...++|+.+|
T Consensus 39 kI~IiG~GsQG~aqaLNlRDSGldV~~~ 66 (489)
T PRK05225 39 KIVIVGCGAQGLNQGLNMRDSGLDISYA 66 (489)
T ss_pred EEEEECCCHHHHHHHCCCCCCCCCEEEE
T ss_conf 5999803658777652441058856999
No 333
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=23.56 E-value=31 Score=14.01 Aligned_cols=33 Identities=21% Similarity=0.222 Sum_probs=22.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHH---HHHCCCC
Q ss_conf 446811100122137641005889998876---3101331
Q gi|255764472|r 187 DKFCTFCVVPYTRGIEISRSLSQVVDEARK---LIDNGVC 223 (469)
Q Consensus 187 ~~~CsfC~ip~~RG~~rSr~~~~Iv~ei~~---l~~~G~k 223 (469)
+.-.-|| .||=.||.+...+++++-. .++.|||
T Consensus 75 ~~~~iyC----wRGG~RS~s~~~~L~~~G~~v~~l~GGYK 110 (311)
T TIGR03167 75 PQPLLYC----WRGGMRSGSLAWLLAQIGFRVPRLEGGYK 110 (311)
T ss_pred CCEEEEE----CCCCHHHHHHHHHHHHCCCCCCCCCCCHH
T ss_conf 9779997----47618789999999985998431578389
No 334
>KOG2412 consensus
Probab=23.37 E-value=44 Score=12.89 Aligned_cols=77 Identities=19% Similarity=0.237 Sum_probs=37.8
Q ss_pred CCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCC-CCC------CHHHHHHHH-HHHHCCCCCCCEE
Q ss_conf 13544210001000366520221112201332111457899873033-344------114678999-8740134432000
Q gi|255764472|r 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRR-HTA------YEYRQIIDR-IRSVRPDIAISSD 334 (469)
Q Consensus 263 iR~~s~~P~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R~-~~~------e~~~~~i~~-~r~~~p~~~i~td 334 (469)
+-+++.+|+..+--|..+.+++|-+.| ||++.+ -..-+|.|+=+ .+- +-|++...- +|=+ .+.+.+|
T Consensus 414 l~i~~q~Pdv~dlllA~l~KkCP~~VP-f~~~~~--~Eq~~k~mGyk~~d~nk~Eqnd~YleRm~Gi~rLY--AAIi~l~ 488 (591)
T KOG2412 414 LYIWSQFPDVGDLLLARLHKKCPYVVP-FHIVNS--TEQYQKMMGYKAWDSNKWEQNDAYLERMDGIMRLY--AAIIQLD 488 (591)
T ss_pred HHHHHHCCHHHHHHHHHHHHCCCCCCC-CCCCCC--HHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHH--HHHHHHC
T ss_conf 999996815899999999862982034-133576--78888862500056554345526999867699999--9999822
Q ss_pred EECCCCCCHH
Q ss_conf 0013522012
Q gi|255764472|r 335 FIVGFPGETD 344 (469)
Q Consensus 335 iIvGfPgETe 344 (469)
+=+|-|++..
T Consensus 489 ~p~~~~~~~h 498 (591)
T KOG2412 489 IPVGNATNVH 498 (591)
T ss_pred CCCCCCCCCC
T ss_conf 4235788777
No 335
>pfam06906 DUF1272 Protein of unknown function (DUF1272). This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=23.37 E-value=23 Score=14.94 Aligned_cols=12 Identities=42% Similarity=0.844 Sum_probs=9.4
Q ss_pred CCCCCCCCCCCH
Q ss_conf 332446811100
Q gi|255764472|r 184 EGCDKFCTFCVV 195 (469)
Q Consensus 184 ~GC~~~CsfC~i 195 (469)
.=|.+.||||..
T Consensus 23 ~ICsfECTFC~~ 34 (57)
T pfam06906 23 RICSFECTFCAD 34 (57)
T ss_pred EEEEEECEECHH
T ss_conf 788785612678
No 336
>KOG2541 consensus
Probab=23.21 E-value=44 Score=12.87 Aligned_cols=62 Identities=27% Similarity=0.426 Sum_probs=28.6
Q ss_pred CCCEEEEEEC----CCHHHHHHHC--CCC-CCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 2201332111----4578998730--333-44114678999874013443200000135220124789886332210111
Q gi|255764472|r 288 MPYLHLPVQS----GSDRILKSMN--RRH-TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYA 360 (469)
Q Consensus 288 ~~~lhlpiQS----gs~~vLk~M~--R~~-~~e~~~~~i~~~r~~~p~~~i~tdiIvGfPgETeedf~~Tl~~i~~~~~~ 360 (469)
+-|+|.|-|- ...+-|-..| |++ ....|++.+..+.+. ++||||..|- +-|-
T Consensus 166 sgY~~~P~~~d~Yl~~s~fLp~iNnEr~~~nntt~k~~f~~L~nL---------VlV~f~~D~v------------i~P~ 224 (296)
T KOG2541 166 SGYWHDPHQIDLYLEHSKFLPKINNERPHENNTTYKDNFLSLGNL---------VLVGFENDTV------------ITPK 224 (296)
T ss_pred CCCCCCCHHHHHHHHHCHHHHHHCCCCCCCCCCHHHHHHHHHCCE---------EEEECCCCCE------------ECCC
T ss_conf 231058157888876431456641788876530788876523457---------9996389977------------5467
Q ss_pred HCCCHHEEEC
Q ss_conf 0020000111
Q gi|255764472|r 361 QAFSFKYSPR 370 (469)
Q Consensus 361 ~~~vf~yS~r 370 (469)
.-.-|-|.+.
T Consensus 225 ~SSwFGfY~d 234 (296)
T KOG2541 225 QSSWFGFYPD 234 (296)
T ss_pred CCCCEEEECC
T ss_conf 5650226428
No 337
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=23.02 E-value=45 Score=12.84 Aligned_cols=26 Identities=15% Similarity=0.395 Sum_probs=13.6
Q ss_pred HHHHHHHH----HHHHHHCCCCEEEEECCC
Q ss_conf 05889998----876310133105873145
Q gi|255764472|r 206 SLSQVVDE----ARKLIDNGVCEITLLGQN 231 (469)
Q Consensus 206 ~~~~Iv~e----i~~l~~~G~kEi~L~g~d 231 (469)
.+++|+++ ++...+.|+.=|-|.|-+
T Consensus 131 eI~~ii~~f~~AA~rA~~AGfDgVEIH~ah 160 (353)
T cd02930 131 EIEQTIEDFARCAALAREAGYDGVEIMGSE 160 (353)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 999999999999999998299989962567
No 338
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase; InterPro: IPR011869 This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of this entry belong to the Proteobacteria. ; GO: 0009021 tRNA (uracil-5-)-methyltransferase activity, 0008033 tRNA processing.
Probab=22.98 E-value=34 Score=13.71 Aligned_cols=28 Identities=18% Similarity=0.303 Sum_probs=18.1
Q ss_pred CCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHH
Q ss_conf 0100036652022111220133211145789987
Q gi|255764472|r 272 DMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKS 305 (469)
Q Consensus 272 ~~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~ 305 (469)
++|++.++++...++|. |+ |.+|..|+.
T Consensus 299 GlD~~t~~Lv~~y~rIl-YI-----SCNP~TL~~ 326 (361)
T TIGR02143 299 GLDPDTVKLVQKYERIL-YI-----SCNPETLKE 326 (361)
T ss_pred CCCHHHHHHHHHCCCEE-EE-----ECCHHHHHH
T ss_conf 88989999996259879-98-----469689999
No 339
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=22.88 E-value=28 Score=14.38 Aligned_cols=24 Identities=29% Similarity=0.491 Sum_probs=17.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4681110012213764100588999887
Q gi|255764472|r 188 KFCTFCVVPYTRGIEISRSLSQVVDEAR 215 (469)
Q Consensus 188 ~~CsfC~ip~~RG~~rSr~~~~Iv~ei~ 215 (469)
.-+-|| .||-.||.....+++++-
T Consensus 88 ~~~vyC----~RGGmRS~s~~~~L~~~G 111 (128)
T cd01520 88 KLLIYC----ARGGMRSQSLAWLLESLG 111 (128)
T ss_pred CEEEEE----ECCCHHHHHHHHHHHHCC
T ss_conf 889998----257706799999999859
No 340
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=22.83 E-value=45 Score=12.82 Aligned_cols=23 Identities=26% Similarity=0.366 Sum_probs=10.5
Q ss_pred CEEEEECC-CCCHHHHHHHHHHHH
Q ss_conf 89999278-325079999999999
Q gi|255764472|r 63 DLIVLNTC-HIREKAAEKVYSFLG 85 (469)
Q Consensus 63 DviiINTC-sV~~~ae~k~~~~i~ 85 (469)
++.++|-- .+|..-.++..+.+.
T Consensus 59 ~L~vvnfsd~ftgr~kde~~~~L~ 82 (388)
T COG5238 59 NLRVVNFSDAFTGRDKDELYSNLV 82 (388)
T ss_pred CEEEEEHHHHHHCCCHHHHHHHHH
T ss_conf 405764566662111788999999
No 341
>COG4294 Uve UV damage repair endonuclease [DNA replication, recombination, and repair]
Probab=22.78 E-value=45 Score=12.81 Aligned_cols=19 Identities=11% Similarity=0.331 Sum_probs=7.5
Q ss_pred CCCHHHHHHHCCCCCCCCC
Q ss_conf 0021678862044430013
Q gi|255764472|r 246 TFSDLLYSLSEIKGLVRLR 264 (469)
Q Consensus 246 ~l~~Ll~~l~~i~~~~riR 264 (469)
.+..+.+.+..++.-.+.|
T Consensus 189 ~~eqf~kni~~LP~~vksR 207 (347)
T COG4294 189 RLEQFIKNIQRLPDSVKSR 207 (347)
T ss_pred HHHHHHHHHHHCCHHHHHH
T ss_conf 7999999886338889976
No 342
>PRK07328 histidinol-phosphatase; Provisional
Probab=22.72 E-value=45 Score=12.80 Aligned_cols=48 Identities=21% Similarity=0.355 Sum_probs=33.6
Q ss_pred HHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHH
Q ss_conf 78999874013443200000135220124789886332210111002000
Q gi|255764472|r 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFK 366 (469)
Q Consensus 317 ~~i~~~r~~~p~~~i~tdiIvGfPgETeedf~~Tl~~i~~~~~~~~~vf~ 366 (469)
.+++.+++.--.+++++|= =.|..=-.+|++.+++++++.|..+.+|.
T Consensus 211 ~il~~~~~~G~~it~gSDA--H~~~~vg~~f~~a~~~lk~~Gf~~~~~f~ 258 (268)
T PRK07328 211 ALLRAARERGIPVVLGSDA--HRPEEVGFGFAEAVALLKEAGYREVAYFR 258 (268)
T ss_pred HHHHHHHHCCCEEEEECCC--CCHHHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 9999999879979990598--98889886899999999986998899997
No 343
>COG1938 Archaeal enzymes of ATP-grasp superfamily [General function prediction only]
Probab=22.63 E-value=45 Score=12.79 Aligned_cols=33 Identities=24% Similarity=0.396 Sum_probs=19.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCEEEEEC
Q ss_conf 110012213764100588999887631-01331058731
Q gi|255764472|r 192 FCVVPYTRGIEISRSLSQVVDEARKLI-DNGVCEITLLG 229 (469)
Q Consensus 192 fC~ip~~RG~~rSr~~~~Iv~ei~~l~-~~G~kEi~L~g 229 (469)
.|.+|..+. -+.++.+.+-.++ +.|+++|++.|
T Consensus 82 ~~dv~I~p~-----~i~e~s~~v~~w~~~~~v~~ii~~~ 115 (244)
T COG1938 82 VSDVPIPPA-----VIYEISNAVVEWAEENGVEEVISLG 115 (244)
T ss_pred EECCCCCHH-----HHHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 824789878-----8999999999999971974999966
No 344
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=22.60 E-value=45 Score=12.78 Aligned_cols=13 Identities=23% Similarity=0.271 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 5889998876310
Q gi|255764472|r 207 LSQVVDEARKLID 219 (469)
Q Consensus 207 ~~~Iv~ei~~l~~ 219 (469)
+++|++|+..+..
T Consensus 142 l~~v~~e~~~~fp 154 (329)
T cd06568 142 VDDVFRELAALTP 154 (329)
T ss_pred HHHHHHHHHHCCC
T ss_conf 9999999996689
No 345
>cd06288 PBP1_sucrose_transcription_regulator Ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=22.56 E-value=46 Score=12.78 Aligned_cols=21 Identities=24% Similarity=0.438 Sum_probs=15.4
Q ss_pred HHHHHHHHCCCCEEEEECCCC
Q ss_conf 988763101331058731454
Q gi|255764472|r 212 DEARKLIDNGVCEITLLGQNV 232 (469)
Q Consensus 212 ~ei~~l~~~G~kEi~L~g~d~ 232 (469)
.-++.|.+.|++.|.+++.+.
T Consensus 106 ~a~~~L~~~G~~~i~~i~~~~ 126 (269)
T cd06288 106 DATRHLLAAGHRRIAFINGEP 126 (269)
T ss_pred HHHHHHHHHCCCCEEEEECCC
T ss_conf 999999984887557874898
No 346
>PRK13122 consensus
Probab=22.45 E-value=46 Score=12.76 Aligned_cols=12 Identities=8% Similarity=-0.241 Sum_probs=6.0
Q ss_pred CCCCEEEEECCC
Q ss_conf 898189996473
Q gi|255764472|r 98 GGDLLVVVAGCV 109 (469)
Q Consensus 98 ~p~~~IvVtGC~ 109 (469)
..+.++++.|.+
T Consensus 73 ~~~~pivlM~Y~ 84 (242)
T PRK13122 73 QIKCNYVLMTYY 84 (242)
T ss_pred CCCCCEEEEEEC
T ss_conf 679877999851
No 347
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed
Probab=22.41 E-value=46 Score=12.76 Aligned_cols=114 Identities=18% Similarity=0.256 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHH-CCCCEEEEECCCCCEEEECCCCC--CCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCC
Q ss_conf 889998876310-13310587314541134113444--310002167886204443001354421000100036652022
Q gi|255764472|r 208 SQVVDEARKLID-NGVCEITLLGQNVNAWRGKGLDG--EKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDL 284 (469)
Q Consensus 208 ~~Iv~ei~~l~~-~G~kEi~L~g~d~~~Y~g~~~~~--~~~~l~~Ll~~l~~i~~~~riR~~s~~P~~~~~~li~~~~~~ 284 (469)
..|++|.+.+-+ .|-.=|-+. | |.+.+. .+..-..|.+.+.+...-..-++.......+.+.|+ .+.
T Consensus 272 gkIIqELE~~FrgAGWnVIkvi------w-G~~wd~Lfa~d~~g~L~~~m~e~~DgeyQ~~~~~~Gay~Re~ff---g~~ 341 (886)
T PRK09405 272 GKIIQELEGIFRGAGWNVIKVI------W-GSRWDPLLAKDTSGKLVQRMNETVDGDYQTYKAKDGAYVREHFF---GKY 341 (886)
T ss_pred CHHHHHHHHHHHHCCCCEEEEE------C-CHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHCCCHHHHHHHHC---CCC
T ss_conf 1799999998854796189982------1-51689998337856699999984037888784187999999872---899
Q ss_pred CCCCCCEEEEEECCCHHHHHHHCCC-CCCCHHHHHHHHHHHH--CCCCCCCEEE
Q ss_conf 1112201332111457899873033-3441146789998740--1344320000
Q gi|255764472|r 285 DVLMPYLHLPVQSGSDRILKSMNRR-HTAYEYRQIIDRIRSV--RPDIAISSDF 335 (469)
Q Consensus 285 ~~i~~~lhlpiQSgs~~vLk~M~R~-~~~e~~~~~i~~~r~~--~p~~~i~tdi 335 (469)
+.+.. | +.+-||.=|..+||+ |+......+....-+. .|-+.+.-++
T Consensus 342 pel~~---L-V~~lSD~ei~~L~rGGHD~~KvyaAy~~A~~~kgrPTVILA~TV 391 (886)
T PRK09405 342 PETAA---L-VADMSDDDIWALNRGGHDPRKVYAAYKAAVEHKGQPTVILAKTI 391 (886)
T ss_pred HHHHH---H-HHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEE
T ss_conf 78999---9-85189999998652699989999999999736899859998876
No 348
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=22.32 E-value=46 Score=12.75 Aligned_cols=77 Identities=13% Similarity=0.170 Sum_probs=34.8
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCC-CCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 678862044430013544210001000366520221-1122013321114578998730333441146789998740134
Q gi|255764472|r 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 (469)
Q Consensus 250 Ll~~l~~i~~~~riR~~s~~P~~~~~~li~~~~~~~-~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~~~r~~~p~ 328 (469)
|+..+.+..|..-+-++. +.=.+.+++...+.+ .+ +.+ |+ -+ ..|.....+.++.+++. +
T Consensus 107 iv~~~l~~~Gf~V~dLG~---dv~~e~~v~~~~~~~~di-----vgl-Sa--ll------TtTm~~mk~vi~~l~~~--g 167 (213)
T cd02069 107 LVGVILSNNGYEVIDLGV---MVPIEKILEAAKEHKADI-----IGL-SG--LL------VPSLDEMVEVAEEMNRR--G 167 (213)
T ss_pred HHHHHHHHCCCEEEEECC---CCCHHHHHHHHHHCCCCE-----EEE-EC--CC------CCCHHHHHHHHHHHHHC--C
T ss_conf 999999978966885058---998999999999749999-----998-32--30------30499999999999974--9
Q ss_pred CCCCEEEECC-CCCCHHHHHHH
Q ss_conf 4320000013-52201247898
Q gi|255764472|r 329 IAISSDFIVG-FPGETDDDFRA 349 (469)
Q Consensus 329 ~~i~tdiIvG-fPgETeedf~~ 349 (469)
+ ..-+||| -| ..++|..
T Consensus 168 ~--~vkv~vGGa~--vt~~fa~ 185 (213)
T cd02069 168 I--KIPLLIGGAA--TSRKHTA 185 (213)
T ss_pred C--CEEEEECCCC--CCHHHHH
T ss_conf 9--8179971632--7888998
No 349
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase; InterPro: IPR010039 This entry describes a small family of highly conserved proteins (>60 0dentity). Two of these, BcbF and EcbF of Pasteurella multocida are believed to be part of the capsule polysaccharide biosynthesis machinery because they are co-transcribed from a locus devoted to that purpose . In P. multocida there are six different variant capsules (A-F), and these proteins are found only in B and E. The other two species in which this gene is (currently) found are both also pathogenic. These proteins are also members of the IIIC subfamily of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. All of the characterised enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in this subfamily..
Probab=22.27 E-value=46 Score=12.74 Aligned_cols=55 Identities=15% Similarity=0.207 Sum_probs=38.3
Q ss_pred HH-HHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCC-CCCCCCCHHHHHHH
Q ss_conf 37-6410058899988763101331058731454113411344-43100021678862
Q gi|255764472|r 200 GI-EISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYSLS 255 (469)
Q Consensus 200 G~-~rSr~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y~g~~~~-~~~~~l~~Ll~~l~ 255 (469)
|. .-+.|...|+++.+.+-+.|+.=|+=++-|.-.|.| .+. -+-.+|+-...=|.
T Consensus 18 ~DY~N~~P~~~Vi~~L~~YK~lGF~i~IsssRNMRTY~G-NvG~INI~TLP~I~~WL~ 74 (126)
T TIGR01689 18 GDYANVKPIKAVIEKLREYKALGFEIVISSSRNMRTYEG-NVGKINIHTLPIIIDWLN 74 (126)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCC-CCCCCHHHHHHHHHHHHH
T ss_conf 873235506899999998874687898865656532137-614121202126887875
No 350
>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme; InterPro: IPR006316 These sequences represent a family of pyridoxal-phosphate dependent enzymes that are closely related to the beta subunit of tryptophan synthase. ; GO: 0004834 tryptophan synthase activity, 0030170 pyridoxal phosphate binding, 0000162 tryptophan biosynthetic process.
Probab=22.23 E-value=44 Score=12.89 Aligned_cols=23 Identities=13% Similarity=0.218 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 10058899988763101331058
Q gi|255764472|r 204 SRSLSQVVDEARKLIDNGVCEIT 226 (469)
Q Consensus 204 Sr~~~~Iv~ei~~l~~~G~kEi~ 226 (469)
|-.+..-++++=..-..|+|+|+
T Consensus 102 SHK~NTA~AqAYYak~~G~k~l~ 124 (426)
T TIGR01415 102 SHKINTAIAQAYYAKKEGAKRLV 124 (426)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 85244799999987554843743
No 351
>pfam00290 Trp_syntA Tryptophan synthase alpha chain.
Probab=22.23 E-value=46 Score=12.73 Aligned_cols=28 Identities=11% Similarity=0.068 Sum_probs=14.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCEE
Q ss_conf 99995798568878999999999879868
Q gi|255764472|r 27 FFVKSYGCQMNVYDSLRMEDMFFSQGYER 55 (469)
Q Consensus 27 v~i~TlGC~~N~~Dse~i~~~L~~~G~~~ 55 (469)
+-+.|.|.+- .-+|..+...|.+.|-..
T Consensus 12 i~yi~aG~P~-~~~~~~~i~~l~~~GaDi 39 (258)
T pfam00290 12 VPFVTAGDPD-LETTLEILEALEEAGADA 39 (258)
T ss_pred EEEEECCCCC-HHHHHHHHHHHHHCCCCE
T ss_conf 9887073899-899999999999769999
No 352
>COG4470 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.18 E-value=32 Score=13.88 Aligned_cols=19 Identities=32% Similarity=0.494 Sum_probs=14.1
Q ss_pred ECCCCCCCCCCCCHHHHHH
Q ss_conf 1233244681110012213
Q gi|255764472|r 182 IQEGCDKFCTFCVVPYTRG 200 (469)
Q Consensus 182 I~~GC~~~CsfC~ip~~RG 200 (469)
|-+=||++|.|-++...+-
T Consensus 84 i~EyCnfGCaYFVl~~~~~ 102 (126)
T COG4470 84 IYEYCNFGCAYFVLKRLRP 102 (126)
T ss_pred HHHHHCCCCHHHHHHHCCH
T ss_conf 9998467743255332164
No 353
>pfam00834 Ribul_P_3_epim Ribulose-phosphate 3 epimerase family. This enzyme catalyses the conversion of D-ribulose 5-phosphate into D-xylulose 5-phosphate.
Probab=22.12 E-value=46 Score=12.72 Aligned_cols=163 Identities=12% Similarity=0.213 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCC-CHHHHHHHCCCCC-CCCCCCCCCCCCCCCHHHHH
Q ss_conf 410058899988763101331058731454113411344431000-2167886204443-00135442100010003665
Q gi|255764472|r 203 ISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTF-SDLLYSLSEIKGL-VRLRYTTSHPRDMSDCLIKA 280 (469)
Q Consensus 203 rSr~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y~g~~~~~~~~~l-~~Ll~~l~~i~~~-~riR~~s~~P~~~~~~li~~ 280 (469)
-+-..-++-+|++.+.+.|+..|-+==.| |.| -.. .+| ++.++.+.+.... .-+++...+|.. .++.
T Consensus 7 l~ad~~~l~~~i~~l~~~g~d~iHiDimD-G~F-Vpn-----~t~g~~~i~~ir~~t~~~~DvHLMv~~P~~----~i~~ 75 (201)
T pfam00834 7 LSADFAHLGEEIKAVENAGADWLHVDVMD-GHF-VPN-----LTIGPLVVEALRPLTELPLDVHLMVEEPDR----IIPD 75 (201)
T ss_pred HHCCHHHHHHHHHHHHHCCCCEEEEECCC-CCC-CCC-----CCCCHHHHHHHHHCCCCCEEEEEEEECHHH----HHHH
T ss_conf 41689999999999997699989982767-972-775-----555877999998638996389999837766----3999
Q ss_pred HCCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHH--CCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 202211122013321114578998730333441146789998740--134432000001352201247898863322101
Q gi|255764472|r 281 HGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV--RPDIAISSDFIVGFPGETDDDFRATMDLVDKIG 358 (469)
Q Consensus 281 ~~~~~~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~~~r~~--~p~~~i~tdiIvGfPgETeedf~~Tl~~i~~~~ 358 (469)
+.+.+ +.++.+..++.+ +..+.++.+|+. .+|+++. |+-.-+.++. +++.
T Consensus 76 ~~~~g--~d~i~~H~E~~~--------------~~~~~i~~ik~~g~k~GlAln-------P~T~~~~l~~---~l~~-- 127 (201)
T pfam00834 76 FAEAG--ADIISFHAEASD--------------HPHRTIQLIKEAGAKAGLVLN-------PATPLDAIEY---LLDD-- 127 (201)
T ss_pred HHHCC--CCEEEECHHHHH--------------CHHHHHHHHHHCCCEEEEEEC-------CCCCCHHHHH---HHHH--
T ss_conf 98739--988997544413--------------799999999864972688856-------9986028887---6742--
Q ss_pred HHHCCCHHEEECCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEC
Q ss_conf 11002000011120123214368898999999999999999999999998579789999842
Q gi|255764472|r 359 YAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIEVLIEK 420 (469)
Q Consensus 359 ~~~~~vf~yS~r~gT~Aa~m~~qV~~~vk~~R~~~l~~~~~~~~~~~~~~~iG~~~~Vlve~ 420 (469)
.|.+-+- |-.||-...+|. + -.-+|.++++++..+ -|....+.||+
T Consensus 128 iD~VLvM--tV~PGf~GQ~f~---~--~~l~KI~~lr~~~~~---------~~~~~~I~vDG 173 (201)
T pfam00834 128 LDLVLLM--SVNPGFGGQSFI---P--SVLPKIRKVRKMIDE---------GGLDTLIEVDG 173 (201)
T ss_pred CCEEEEE--EECCCCCCCCCC---H--HHHHHHHHHHHHHHH---------CCCCEEEEEEC
T ss_conf 7989998--866898876456---7--799999999999982---------69980799989
No 354
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=22.05 E-value=47 Score=12.71 Aligned_cols=11 Identities=36% Similarity=0.942 Sum_probs=7.1
Q ss_pred CCCEEEEECCC
Q ss_conf 08899992783
Q gi|255764472|r 61 DADLIVLNTCH 71 (469)
Q Consensus 61 ~ADviiINTCs 71 (469)
..||+|+|||-
T Consensus 50 ~~DVvimNScL 60 (183)
T cd01842 50 RLDLVIMNSCL 60 (183)
T ss_pred CCCEEEEECCE
T ss_conf 77689988345
No 355
>PRK11371 hypothetical protein; Provisional
Probab=22.05 E-value=36 Score=13.54 Aligned_cols=17 Identities=18% Similarity=0.442 Sum_probs=15.0
Q ss_pred EEEEEECCCCCCCCCCC
Q ss_conf 57874123324468111
Q gi|255764472|r 177 TAFLTIQEGCDKFCTFC 193 (469)
Q Consensus 177 ~a~ikI~~GC~~~CsfC 193 (469)
+.|++-++||-.+|.|-
T Consensus 3 ~vfipts~~~isr~ryi 19 (126)
T PRK11371 3 RVFIPTSNGKISRCRYI 19 (126)
T ss_pred EEEEECCCCCCHHHHHH
T ss_conf 69940788834146888
No 356
>PRK10307 predicted glycosyl transferase; Provisional
Probab=21.99 E-value=47 Score=12.70 Aligned_cols=14 Identities=21% Similarity=0.247 Sum_probs=10.6
Q ss_pred HHHHHHHHHCCCEE
Q ss_conf 99999999879868
Q gi|255764472|r 42 LRMEDMFFSQGYER 55 (469)
Q Consensus 42 e~i~~~L~~~G~~~ 55 (469)
..++..|.+.||++
T Consensus 22 ~~La~~L~~~GheV 35 (415)
T PRK10307 22 GEMAEWLAARGHEV 35 (415)
T ss_pred HHHHHHHHHCCCEE
T ss_conf 99999999789989
No 357
>pfam03357 Snf7 Snf7. This family of proteins are involved in protein sorting and transport from the endosome to the vacuole/lysosome in eukaryotic cells. Vacuoles/lysosomes play an important role in the degradation of both lipids and cellular proteins. In order to perform this degradative function, vacuoles/lysosomes contain numerous hydrolases which have been transported in the form of inactive precursors via the biosynthetic pathway and are proteolytically activated upon delivery to the vacuole/lysosome. The delivery of transmembrane proteins, such as activated cell surface receptors to the lumen of the vacuole/lysosome, either for degradation/downregulation, or in the case of hydrolases, for proper localisation, requires the formation of multivesicular bodies (MVBs). These late endosomal structures are formed by invaginating and budding of the limiting membrane into the lumen of the compartment. During this process, a subset of the endosomal membrane proteins is sorted into the form
Probab=21.96 E-value=44 Score=12.88 Aligned_cols=57 Identities=18% Similarity=0.355 Sum_probs=34.9
Q ss_pred CCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECC-C---CCCHHHHHHHHHHH
Q ss_conf 145789987303334411467899987401344320000013-5---22012478988633
Q gi|255764472|r 297 SGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVG-F---PGETDDDFRATMDL 353 (469)
Q Consensus 297 Sgs~~vLk~M~R~~~~e~~~~~i~~~r~~~p~~~i~tdiIvG-f---PgETeedf~~Tl~~ 353 (469)
+.+..+|+.|++..+.+++.++.+.+.+.+-..-.-+++|-+ | ..+.+++.++-++-
T Consensus 88 ~~~~~~lk~~~~~~~~~~Ve~~m~e~~e~~~~~~ei~e~l~~~~~~~~~~de~ele~El~~ 148 (169)
T pfam03357 88 KGGAKAMKAMNKNMDIDKIDDLMDEIEDQMEKADEISEMLSDTLDDADEEDEEELDAELDA 148 (169)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
T ss_conf 9999999999877999999999999999999877899998642368888888999999999
No 358
>TIGR03565 alk_sulf_monoox alkanesulfonate monooxygenase, FMNH(2)-dependent. Members of this protein family are monooxygenases that catalyze desulfonation of aliphatic sulfonates such as methane sulfonate. This enzyme uses reduced FMN, although various others members of the same luciferase-like monooxygenase family (pfam00296) are F420-dependent enzymes.
Probab=21.85 E-value=47 Score=12.68 Aligned_cols=42 Identities=12% Similarity=0.140 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHCCCEECCCCCCCCEEEEECCCCCHHHH-HHHHHHHHHH
Q ss_conf 789999999998798687760108899992783250799-9999999999
Q gi|255764472|r 39 YDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAA-EKVYSFLGRI 87 (469)
Q Consensus 39 ~Dse~i~~~L~~~G~~~~~~~~~ADviiINTCsV~~~ae-~k~~~~i~~~ 87 (469)
.|+-.+.+.|.+. |+.. -+++-.+.++..++. .|...+|..+
T Consensus 53 ~d~~~~~aala~~----T~~i---~~~~a~~~~~~~P~~~Ar~~aTlD~~ 95 (346)
T TIGR03565 53 EDSWVTASALAPV----TERL---KFLVAVRPGLMSPTVAARMAATLDRL 95 (346)
T ss_pred CCHHHHHHHHHHH----HCCC---EEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 8889999999997----3803---38999837876889999999989987
No 359
>pfam03808 Glyco_tran_WecB Glycosyl transferase WecB/TagA/CpsF family.
Probab=21.80 E-value=47 Score=12.67 Aligned_cols=45 Identities=18% Similarity=0.299 Sum_probs=18.5
Q ss_pred HHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 789998740134432000001352201247898863322101110020
Q gi|255764472|r 317 QIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFS 364 (469)
Q Consensus 317 ~~i~~~r~~~p~~~i~tdiIvGfPgETeedf~~Tl~~i~~~~~~~~~v 364 (469)
.+.+.+++..|++.+.. .-.||-++ ++-++.++.+++.++|.+.|
T Consensus 63 ~~~~~l~~~yP~l~i~g-~~~g~f~~--~e~~~i~~~I~~~~~div~v 107 (172)
T pfam03808 63 KAAARLRARYPGLRIVG-THDGYFSP--EEEEAIIEAINASGPDLLFV 107 (172)
T ss_pred HHHHHHHHHCCCCEEEE-EECCCCCH--HHHHHHHHHHHHCCCCEEEE
T ss_conf 99999998879955999-87999986--89999999998459999999
No 360
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=21.79 E-value=47 Score=12.67 Aligned_cols=62 Identities=15% Similarity=0.172 Sum_probs=33.3
Q ss_pred EECCC-CCCHHHHHHHHHHHHHHHHHHHCCCHH-EEECCCHH--HHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 00135-220124789886332210111002000-01112012--3214368898999999999999
Q gi|255764472|r 335 FIVGF-PGETDDDFRATMDLVDKIGYAQAFSFK-YSPRLGTP--GSNMLEQVDENVKAERLLCLQK 396 (469)
Q Consensus 335 iIvGf-PgETeedf~~Tl~~i~~~~~~~~~vf~-yS~r~gT~--Aa~m~~qV~~~vk~~R~~~l~~ 396 (469)
+.+-. |..+++++.+.++.+.+..++-+-+.- =..|++-. .....+-++.....+|+.++..
T Consensus 211 I~vKisPDl~~~~l~~i~~~~~~~~idGii~tNTt~~r~~l~~~~~~~~GGLSG~pl~~~s~~~v~ 276 (336)
T PRK05286 211 LLLKIAPDLSDEELDDIADLALEHGIDGIIATNTTLDRSGLEGPNAEEAGGLSGRPLFERSTEVIR 276 (336)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 488328888878999999999981986899958867664456655566687464067899999999
No 361
>TIGR02153 gatD_arch glutamyl-tRNA(Gln) amidotransferase, subunit D; InterPro: IPR011878 This peptide is found only in the Archaea. It is part of a heterodimer, with GatD (IPR004414 from INTERPRO), that acts as an amidotransferase on misacylated Glu-tRNA(Gln) to produce Gln-tRNA(Gln). The analogous amidotransferase found in bacteria is the GatABC system, although GatABC homologs in the Archaea appear to act instead on Asp-tRNA(Asn) .; GO: 0006450 regulation of translational fidelity.
Probab=21.77 E-value=47 Score=12.67 Aligned_cols=29 Identities=21% Similarity=0.267 Sum_probs=16.6
Q ss_pred HCCCCCEEEEECCC-------------CCCCHHHHHHHHCCC
Q ss_conf 21898189996473-------------010878898741001
Q gi|255764472|r 96 KEGGDLLVVVAGCV-------------AQAEGEEILRRSPIV 124 (469)
Q Consensus 96 k~~p~~~IvVtGC~-------------aq~~~e~l~~~~p~v 124 (469)
.+.|+..|+=||-- |+--+|+|++..|+.
T Consensus 63 ~~l~~V~IlsTGGTIASrVDYeTGAV~P~ftAeel~~~~PEL 104 (413)
T TIGR02153 63 PELPKVSILSTGGTIASRVDYETGAVKPAFTAEELARAVPEL 104 (413)
T ss_pred CCCCEEEEEECCCEEEEEEEEEECCCCCCCCHHHHHHHCCCH
T ss_conf 788727999828878999730305600453989998617400
No 362
>pfam06838 Alum_res Aluminium resistance protein. This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria.
Probab=21.75 E-value=47 Score=12.67 Aligned_cols=25 Identities=12% Similarity=0.126 Sum_probs=11.8
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 2000001352201247898863322101
Q gi|255764472|r 331 ISSDFIVGFPGETDDDFRATMDLVDKIG 358 (469)
Q Consensus 331 i~tdiIvGfPgETeedf~~Tl~~i~~~~ 358 (469)
-++|+|--.-=.++ +..+.|++.++
T Consensus 308 ~R~DiIQav~l~~~---e~liaFC~~iQ 332 (405)
T pfam06838 308 KRTDLIQAVKFGDK---EKLIAFCQAIQ 332 (405)
T ss_pred CCCCEEEEEECCCH---HHHHHHHHHHH
T ss_conf 87745788867998---99999999987
No 363
>pfam02375 JmjN jmjN domain.
Probab=21.71 E-value=39 Score=13.27 Aligned_cols=17 Identities=24% Similarity=0.516 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 12478988633221011
Q gi|255764472|r 343 TDDDFRATMDLVDKIGY 359 (469)
Q Consensus 343 Teedf~~Tl~~i~~~~~ 359 (469)
|+|+|++.+.++++++.
T Consensus 6 T~eEF~Dp~~Yi~~i~~ 22 (34)
T pfam02375 6 TMEEFKDPIKYIEKIRP 22 (34)
T ss_pred CHHHHHCHHHHHHHHHH
T ss_conf 99999689999999999
No 364
>TIGR01020 rpsE_arch ribosomal protein S5; InterPro: IPR005711 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites , . About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many of ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome , . This model finds eukaryotic ribosomal protein S2 as well as archaeal ribosomal protein S5.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0015935 small ribosomal subunit.
Probab=21.70 E-value=35 Score=13.59 Aligned_cols=27 Identities=26% Similarity=0.604 Sum_probs=20.2
Q ss_pred EEEECCCCCCCCCCC----CHHH-HHHHHHHH
Q ss_conf 874123324468111----0012-21376410
Q gi|255764472|r 179 FLTIQEGCDKFCTFC----VVPY-TRGIEISR 205 (469)
Q Consensus 179 ~ikI~~GC~~~CsfC----~ip~-~RG~~rSr 205 (469)
+++|.|||=+.=.-| ++|+ ..|+.=|.
T Consensus 117 Ii~VrRGCGsWec~cG~pHsvPfkV~Gk~GSV 148 (220)
T TIGR01020 117 IIPVRRGCGSWECGCGRPHSVPFKVSGKSGSV 148 (220)
T ss_pred EEEEECCCCCCCCCCCCCCCCCEEEEECCCEE
T ss_conf 35664056763465788853345650000048
No 365
>cd01770 p47_UBX p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=21.70 E-value=30 Score=14.14 Aligned_cols=46 Identities=20% Similarity=0.262 Sum_probs=24.5
Q ss_pred HHCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 730333441146789998740134432000001352201247898863
Q gi|255764472|r 305 SMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352 (469)
Q Consensus 305 ~M~R~~~~e~~~~~i~~~r~~~p~~~i~tdiIvGfPgETeedf~~Tl~ 352 (469)
++|-.+++.+..+.|...+-..+.-.+ .++.|||--.-+|...|++
T Consensus 20 ~FN~~~tV~dv~~fI~~~~p~~~~~~F--~L~t~FP~k~l~d~~~Tl~ 65 (79)
T cd01770 20 KFNSSHRVSDVRDFIVNARPEFAARPF--TLMTAFPVKELSDESLTLK 65 (79)
T ss_pred EECCCCCHHHHHHHHHHHCCCCCCCCE--EEECCCCCCCCCCCCCCHH
T ss_conf 957978899999999983987789987--8865799973587877778
No 366
>TIGR03558 oxido_grp_1 luciferase family oxidoreductase, group 1. The Pfam domain family pfam00296 is named for luciferase-like monooxygenases, but the family also contains several coenzyme F420-dependent enzymes. This protein family represents a well-resolved clade within family pfam00296 and shows no restriction to coenzyme F420-positive species, unlike some other clades within pfam00296.
Probab=21.67 E-value=47 Score=12.65 Aligned_cols=14 Identities=14% Similarity=0.280 Sum_probs=7.7
Q ss_pred CCCCHHHHHHHHHH
Q ss_conf 52201247898863
Q gi|255764472|r 339 FPGETDDDFRATMD 352 (469)
Q Consensus 339 fPgETeedf~~Tl~ 352 (469)
|.+||+++.++...
T Consensus 221 ~vaet~eeA~~~a~ 234 (323)
T TIGR03558 221 VAADTDEEAERLAT 234 (323)
T ss_pred ECCCCHHHHHHHHH
T ss_conf 21799999999973
No 367
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family; InterPro: IPR006266 This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic. ; GO: 0005524 ATP binding, 0016776 phosphotransferase activity phosphate group as acceptor, 0019201 nucleotide kinase activity, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=21.66 E-value=47 Score=12.65 Aligned_cols=18 Identities=39% Similarity=0.687 Sum_probs=12.2
Q ss_pred EECCCCC--CHHHHHHHHH-H
Q ss_conf 0013522--0124789886-3
Q gi|255764472|r 335 FIVGFPG--ETDDDFRATM-D 352 (469)
Q Consensus 335 iIvGfPg--ETeedf~~Tl-~ 352 (469)
+|=|||= |..+.|.+++ +
T Consensus 83 LIDGFPRN~eN~~~W~~~~P~ 103 (189)
T TIGR01359 83 LIDGFPRNEENLEAWEKLMPD 103 (189)
T ss_pred EECCCCCCHHHHHHHHHHCCC
T ss_conf 662578888788889861787
No 368
>pfam10579 Rapsyn_N Rapsyn N-terminal myristoylation and linker region. Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane.
Probab=21.59 E-value=19 Score=15.69 Aligned_cols=32 Identities=22% Similarity=0.234 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHH
Q ss_conf 9999998767664218981899964730108788
Q gi|255764472|r 83 FLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE 116 (469)
Q Consensus 83 ~i~~~~~~~~~~~k~~p~~~IvVtGC~aq~~~e~ 116 (469)
.|+++++.-++ -.++..+..+-||++|++.|.
T Consensus 25 Av~~W~~~L~k--~~~~~~rF~~LGyL~qA~~e~ 56 (80)
T pfam10579 25 ALEIWRKVLEK--TTDREGRFRVLGCLITAHSEM 56 (80)
T ss_pred HHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHH
T ss_conf 99999999987--247001478998999999898
No 369
>COG5211 SSU72 RNA polymerase II-interacting protein involved in transcription start site selection [Transcription]
Probab=21.58 E-value=41 Score=13.11 Aligned_cols=24 Identities=25% Similarity=0.427 Sum_probs=16.5
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEC
Q ss_conf 985688789999999998798687
Q gi|255764472|r 33 GCQMNVYDSLRMEDMFFSQGYERV 56 (469)
Q Consensus 33 GC~~N~~Dse~i~~~L~~~G~~~~ 56 (469)
-|+.||.-|.--...|+++||.+-
T Consensus 12 ~CAsNqNRSMetH~vL~~aGy~V~ 35 (197)
T COG5211 12 TCASNQNRSMETHDVLAKAGYPVK 35 (197)
T ss_pred EECCCCCCCHHHHHHHHHCCCCCC
T ss_conf 620477754178899998598643
No 370
>KOG4655 consensus
Probab=21.57 E-value=39 Score=13.24 Aligned_cols=36 Identities=22% Similarity=0.490 Sum_probs=26.0
Q ss_pred CCCCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 44681110--0122137641005889998876310133105
Q gi|255764472|r 187 DKFCTFCV--VPYTRGIEISRSLSQVVDEARKLIDNGVCEI 225 (469)
Q Consensus 187 ~~~CsfC~--ip~~RG~~rSr~~~~Iv~ei~~l~~~G~kEi 225 (469)
..-||||- -|..-|++| ..+-+.++-.++++|.-.+
T Consensus 99 vtvssfCrRRLP~Vm~~l~---m~~~~k~A~~~vEqGHVRv 136 (181)
T KOG4655 99 VTVSSFCRRRLPVVMGRLR---MAESVKEAVRFVEQGHVRV 136 (181)
T ss_pred CHHHHHHHHCCCEEEEECH---HHHHHHHHHHHHHCCCEEE
T ss_conf 2067776304651334020---0166999999998185351
No 371
>TIGR00708 cobA cob(I)alamin adenosyltransferase; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) . Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type , EutT-type and PduO-type . Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represnts the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins . CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin , . ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid ac-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process.
Probab=21.45 E-value=48 Score=12.62 Aligned_cols=30 Identities=17% Similarity=0.028 Sum_probs=14.8
Q ss_pred ECCCCCCCCCCCCHHHHHH-HHHHHHHHHHH
Q ss_conf 1233244681110012213-76410058899
Q gi|255764472|r 182 IQEGCDKFCTFCVVPYTRG-IEISRSLSQVV 211 (469)
Q Consensus 182 I~~GC~~~CsfC~ip~~RG-~~rSr~~~~Iv 211 (469)
=|.|--..|+|=+.-...- ...+|+-++=+
T Consensus 63 dqhGiG~~~~F~~~~~G~~w~~~~r~~~~~i 93 (191)
T TIGR00708 63 DQHGIGEKVEFKVMGEGFTWETQDRKADTDI 93 (191)
T ss_pred HHCCCCCCCEEEEEECCCCCCCCCCCCHHHH
T ss_conf 3137775411223303786444788541158
No 372
>pfam02449 Glyco_hydro_42 Beta-galactosidase. This group of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.
Probab=21.44 E-value=48 Score=12.62 Aligned_cols=41 Identities=27% Similarity=0.428 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHCCCCCCCEEEECC-CCCCHHHHHHHHHHHH
Q ss_conf 1467899987401344320000013-5220124789886332
Q gi|255764472|r 314 EYRQIIDRIRSVRPDIAISSDFIVG-FPGETDDDFRATMDLV 354 (469)
Q Consensus 314 ~~~~~i~~~r~~~p~~~i~tdiIvG-fPgETeedf~~Tl~~i 354 (469)
-+..-++.+|+..|+..++|+||.+ |.+-..-++.+-||++
T Consensus 216 ~~~~q~~iir~~~p~~pvTtN~m~~~~~~~D~~~~a~~lD~v 257 (376)
T pfam02449 216 FYRAEREIIREYTPDIPVTTNFMGSYFYDLDYFKWAKELDFV 257 (376)
T ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHCCCEE
T ss_conf 999999999974989967850146778887888986118598
No 373
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=21.05 E-value=49 Score=12.57 Aligned_cols=13 Identities=23% Similarity=0.439 Sum_probs=6.0
Q ss_pred CCCCCCEEEEECC
Q ss_conf 6010889999278
Q gi|255764472|r 58 SMDDADLIVLNTC 70 (469)
Q Consensus 58 ~~~~ADviiINTC 70 (469)
++.+=|.||+|-+
T Consensus 69 d~k~iDYIi~~H~ 81 (388)
T COG0426 69 DPKEIDYIIVNHT 81 (388)
T ss_pred CHHCCEEEEECCC
T ss_conf 8001719997888
No 374
>cd00587 HCP_like The HCP family of iron-sulfur proteins includes hybrid cluster protein (HCP), acetyl-CoA synthase (ACS), and carbon monoxide dehydrogenase (CODH), all of which contain [Fe4-S4] metal clusters at their active sites. These proteins have a conserved alpha-beta rossman fold domain. HCP, formerly known as prismane, is thought to play a role in nitrogen metabolism but its specific function is unknown. Acetyl-CoA synthase (ACS), is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide and CoA.
Probab=21.00 E-value=49 Score=12.56 Aligned_cols=45 Identities=18% Similarity=0.326 Sum_probs=25.5
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHH
Q ss_conf 899992783250799999999999998767664218981899964730108788
Q gi|255764472|r 63 DLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEE 116 (469)
Q Consensus 63 DviiINTCsV~~~ae~k~~~~i~~~~~~~~~~~k~~p~~~IvVtGC~aq~~~e~ 116 (469)
-++.|.-|.=....++.. +.-++++-+ .+..|+.|||.+.+..+.
T Consensus 96 Gv~~iVGCnN~k~qd~~~---~~iakeLik------~dvlVvaTGC~a~a~~k~ 140 (258)
T cd00587 96 GVALIVGCNNDKKQDKAY---ADIAKELMK------RGVMVLATGCAAEALLKL 140 (258)
T ss_pred EEEEEEECCCCCCHHHHH---HHHHHHHHH------CCEEEEECCHHHHHHHHC
T ss_conf 278998489982011479---999999986------997999777589999873
No 375
>pfam03652 UPF0081 Uncharacterized protein family (UPF0081).
Probab=20.90 E-value=49 Score=12.54 Aligned_cols=36 Identities=14% Similarity=0.251 Sum_probs=19.0
Q ss_pred EECCCC----CCHHHHHHHHHHHHHHHHHH-HCCCHHEEEC
Q ss_conf 001352----20124789886332210111-0020000111
Q gi|255764472|r 335 FIVGFP----GETDDDFRATMDLVDKIGYA-QAFSFKYSPR 370 (469)
Q Consensus 335 iIvGfP----gETeedf~~Tl~~i~~~~~~-~~~vf~yS~r 370 (469)
|+||+| |..-+--+.+.+|.+++.-. .+-|.-+-.|
T Consensus 55 iVvGlP~~~dG~~~~~~~~v~~f~~~L~~~~~i~v~~~DEr 95 (134)
T pfam03652 55 IVVGLPLNMDGSEGEQTKRVRKFARRLKKRFGLPVELVDER 95 (134)
T ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 99955899998808899999999999998619986886343
No 376
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=20.85 E-value=49 Score=12.54 Aligned_cols=20 Identities=25% Similarity=0.424 Sum_probs=11.9
Q ss_pred CCCCCCEEEECCCCCCHHHH
Q ss_conf 34432000001352201247
Q gi|255764472|r 327 PDIAISSDFIVGFPGETDDD 346 (469)
Q Consensus 327 p~~~i~tdiIvGfPgETeed 346 (469)
|=+..+.-++||||.|.-+.
T Consensus 91 Pil~~~~~~~vGf~~e~~~a 110 (113)
T cd03033 91 PLMQVGDRRMVGFDTARVDA 110 (113)
T ss_pred CEEEECCEEEECCCHHHHHH
T ss_conf 70888999885799899998
No 377
>PRK13133 consensus
Probab=20.84 E-value=49 Score=12.54 Aligned_cols=35 Identities=20% Similarity=0.413 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHH
Q ss_conf 1467899987401344320000013522012478988633
Q gi|255764472|r 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353 (469)
Q Consensus 314 ~~~~~i~~~r~~~p~~~i~tdiIvGfPgETeedf~~Tl~~ 353 (469)
.+.+.++++|+.- ..-+.|||==-|.++.++..++
T Consensus 198 ~~~~~i~~ik~~t-----~~Pv~vGFGI~~~e~~~~i~~~ 232 (267)
T PRK13133 198 AVDEYLKRVRQHT-----KKKFVVGFGIKDRERVEHMWEL 232 (267)
T ss_pred HHHHHHHHHHHCC-----CCCEEEECCCCCHHHHHHHHHH
T ss_conf 9999999999718-----9987996687999999999822
No 378
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=20.79 E-value=49 Score=12.53 Aligned_cols=50 Identities=16% Similarity=0.256 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEE
Q ss_conf 1467899987401344320000013522012478988633221011100200001
Q gi|255764472|r 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS 368 (469)
Q Consensus 314 ~~~~~i~~~r~~~p~~~i~tdiIvGfPgETeedf~~Tl~~i~~~~~~~~~vf~yS 368 (469)
...+++..+++..|+. ++|||--||++-.+.-.+-+++-+.|.+-.-..|
T Consensus 303 ~npDIL~~i~~~~~~~-----~~VGFaaEt~~l~~~A~~Kl~~K~~D~IvaN~v~ 352 (392)
T PRK05579 303 PNPDILAEVAALKDNQ-----PLVGFAAETGNVLEYARAKLKRKGLDLIVANDVS 352 (392)
T ss_pred ECHHHHHHHHCCCCCC-----EEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 2828999986128997-----5999963777189999999997598999993589
No 379
>TIGR01975 isoAsp_dipep beta-aspartyl peptidase; InterPro: IPR010229 Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site . The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This group of proteins include metallopeptidases belonging to the MEROPS peptidase family M38 (clan MJ, beta-aspartyl dipeptidase family). This entry includes the beta-aspartyl dipeptidase from Escherichia coli, (3.4.19.5 from EC, IadA), which degrades isoaspartyl dipeptides and may unblock degradation of proteins that cannot be repaired. This entry also describes closely related proteins from other species (e.g. Clostridium perfringens, Thermoanaerobacter tengcongensis) that may have an equivalent in function. This family shows homology to dihydroorotases. The L-isoaspartyl derivative of Asp arises non-enzymatically over time as a form of protein damage. In this isomerisation, the connectivity of the polypeptide changes to pass through the beta-carboxyl of the side chain. Much but not all of this damage can be repaired by protein-L-isoaspartate (D-aspartate) O-methyltransferase..
Probab=20.51 E-value=50 Score=12.49 Aligned_cols=199 Identities=17% Similarity=0.192 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCCC----HHHHHHHCCCCCCCCCCC---CCCCCCC
Q ss_conf 764100588999887631013310587314541134113444310002----167886204443001354---4210001
Q gi|255764472|r 201 IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFS----DLLYSLSEIKGLVRLRYT---TSHPRDM 273 (469)
Q Consensus 201 ~~rSr~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y~g~~~~~~~~~l~----~Ll~~l~~i~~~~riR~~---s~~P~~~ 273 (469)
+..||.++++++.+++|-++|+.-.+||| +| +++. .++. .-|--|.++=|.-.+-+| |..|..
T Consensus 101 Dgi~R~m~~L~AKArAL~eEGvs~y~ltG----aY---~vP~--~TlTgsv~sDl~LIDkvIGvGeiAiSDHRSaqPt~- 170 (391)
T TIGR01975 101 DGITRDMESLLAKARALEEEGVSCYVLTG----AY---EVPV--RTLTGSVKSDLLLIDKVIGVGEIAISDHRSAQPTV- 170 (391)
T ss_pred CCCCCCCHHHHHHHHHHHHCCEEEEEEEC----CE---ECCC--CCCCCCEEEEEEEEEEEEEEEEEEECCCCCCCCCH-
T ss_conf 86225846789999865207826999633----31---3552--00151124326788335542457221477887448-
Q ss_pred CCHHHHHHCCC---------CCCCCCEEEEEECCCHHHH-------------------HHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 00036652022---------1112201332111457899-------------------8730333441146789998740
Q gi|255764472|r 274 SDCLIKAHGDL---------DVLMPYLHLPVQSGSDRIL-------------------KSMNRRHTAYEYRQIIDRIRSV 325 (469)
Q Consensus 274 ~~~li~~~~~~---------~~i~~~lhlpiQSgs~~vL-------------------k~M~R~~~~e~~~~~i~~~r~~ 325 (469)
++|....|++ +-+. ++|++= |.+.| -.|||. .+-|...++.+|+=
T Consensus 171 -~~L~~~aAeARVGGLLgGK~Giv-~~H~Gd---s~~~L~~i~~~v~~~dvPi~q~lPTH~nR~--~~LFE~g~~fa~~G 243 (391)
T TIGR01975 171 -EELTNLAAEARVGGLLGGKPGIV-NLHVGD---SKRKLEPIEELVEETDVPITQFLPTHINRN--RELFEAGLEFAKKG 243 (391)
T ss_pred -HHHHHHHHHHCCCCCCCCCCCEE-EEEECC---CHHHHHHHHHHHHHCCCCCCCCCCCCCCCC--HHHHHHHHHHHHCC
T ss_conf -99999977511241116887568-996369---867777999998505887002557764767--56899999999739
Q ss_pred CCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEECCCH-HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 134432000001352201247898863322101110020000111201-2321436889899999999999999999999
Q gi|255764472|r 326 RPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT-PGSNMLEQVDENVKAERLLCLQKKLREQQVS 404 (469)
Q Consensus 326 ~p~~~i~tdiIvGfPgETeedf~~Tl~~i~~~~~~~~~vf~yS~r~gT-~Aa~m~~qV~~~vk~~R~~~l~~~~~~~~~~ 404 (469)
--+=|+|++.=-|-.|++=.-.+-++-+=+.+.+--.|.==|.=.|. |+++=.... ++=-.-.+..|+++++..
T Consensus 244 -G~iDlTss~~p~~~~egev~p~eGlk~~l~~gvPle~vT~sSDgnGS~P~Fde~g~l----~~~~v~~~~sLf~~v~~a 318 (391)
T TIGR01975 244 -GTIDLTSSIDPQFRKEGEVKPAEGLKKLLEAGVPLEKVTFSSDGNGSLPLFDENGEL----KGLGVGSVESLFEEVREA 318 (391)
T ss_pred -CEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCE----EEEEEECHHHHHHHHHHH
T ss_conf -808760278887553554376789999996389752356423578874637678746----335760416678999999
Q ss_pred HHHHH--CCCEEEEEEECC
Q ss_conf 99985--797899998425
Q gi|255764472|r 405 FNDAC--VGQIIEVLIEKH 421 (469)
Q Consensus 405 ~~~~~--iG~~~~Vlve~~ 421 (469)
..+.. +-+-++|+-+..
T Consensus 319 v~~~~~pL~~al~v~T~nv 337 (391)
T TIGR01975 319 VKEGDVPLEKALRVITSNV 337 (391)
T ss_pred HHHCCCCHHHCCEEECCCC
T ss_conf 8514787657646440364
No 380
>TIGR03555 F420_mer 5,10-methylenetetrahydromethanopterin reductase. Members of this protein family are 5,10-methylenetetrahydromethanopterin reductase, an F420-dependent enzyme of methanogenesis. It is restricted to the Archaea.
Probab=20.51 E-value=50 Score=12.49 Aligned_cols=51 Identities=14% Similarity=0.318 Sum_probs=25.0
Q ss_pred ECCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCC-CCHHHHHHHHHHHH
Q ss_conf 114578998730333441146789998740134432000001352-20124789886332
Q gi|255764472|r 296 QSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFP-GETDDDFRATMDLV 354 (469)
Q Consensus 296 QSgs~~vLk~M~R~~~~e~~~~~i~~~r~~~p~~~i~tdiIvGfP-gETeedf~~Tl~~i 354 (469)
+.-++.++..+.=-.|+++..+.+..+.+. |+ +.||+++| |... +++++++
T Consensus 268 ~~v~~~~~~~~~i~Gtpe~v~~~i~~~~~~--Gv---d~i~~~~~~g~~~---~~~ielf 319 (325)
T TIGR03555 268 GLVDDDMIEAFSIAGTPDDVIEKIEELLKA--GV---TQVVAGSPIGPDK---EKAIKLI 319 (325)
T ss_pred HCCCHHHHCCCEEECCHHHHHHHHHHHHHC--CC---CEEEEECCCCCCH---HHHHHHH
T ss_conf 449988972786889999999999999974--99---8799828889798---9999999
No 381
>PRK13115 consensus
Probab=20.49 E-value=50 Score=12.48 Aligned_cols=35 Identities=11% Similarity=0.190 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHH
Q ss_conf 1467899987401344320000013522012478988633
Q gi|255764472|r 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353 (469)
Q Consensus 314 ~~~~~i~~~r~~~p~~~i~tdiIvGfPgETeedf~~Tl~~ 353 (469)
+..+.++++|+.. ..-+.+||==-|.|+..+..++
T Consensus 197 ~~~~~i~~ik~~t-----~~Pv~vGFGIs~~e~~~~~~~~ 231 (269)
T PRK13115 197 AAPELVARVRAAS-----DIPVCVGLGVSSAAQAAEIAGY 231 (269)
T ss_pred HHHHHHHHHHHHC-----CCCCEEECCCCCHHHHHHHHHH
T ss_conf 7999999999717-----9981797278999999999802
No 382
>TIGR02036 dsdC D-serine deaminase transcriptional activator; InterPro: IPR011781 This family, part of the LysR family of transcriptional regulators, activates transcription of the gene for D-serine deaminase, dsdA. Trusted members of this family so far are found adjacent to dsdA and only in Gammaproteobacteria, including Escherichia coli, Vibrio cholerae, and Colwellia psychrerythraea..
Probab=20.48 E-value=50 Score=12.48 Aligned_cols=38 Identities=16% Similarity=0.155 Sum_probs=15.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE--CCCCCEEEE
Q ss_conf 00122137641005889998876310133105873--145411341
Q gi|255764472|r 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLL--GQNVNAWRG 237 (469)
Q Consensus 194 ~ip~~RG~~rSr~~~~Iv~ei~~l~~~G~kEi~L~--g~d~~~Y~g 237 (469)
-||..-|--+-+|-=+ --+=.|=-.|.|- |.|++-|.|
T Consensus 111 LVPri~~F~~~YPsIs------L~~LTGNeNinfqg~GIDvAIYFD 150 (302)
T TIGR02036 111 LVPRIADFKKRYPSIS------LKVLTGNENINFQGAGIDVAIYFD 150 (302)
T ss_pred HHHHHHHHHHCCCCEE------EEECCCCCCEECCCCCCEEEEEEC
T ss_conf 3232321200387122------110015353201357503788707
No 383
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=20.41 E-value=50 Score=12.47 Aligned_cols=22 Identities=14% Similarity=0.117 Sum_probs=12.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q ss_conf 9999579856887899999999
Q gi|255764472|r 27 FFVKSYGCQMNVYDSLRMEDMF 48 (469)
Q Consensus 27 v~i~TlGC~~N~~Dse~i~~~L 48 (469)
+-+-+||=+-+.-|-......+
T Consensus 8 vLL~nlG~P~~~e~v~~yL~~~ 29 (320)
T COG0276 8 VLLLNLGGPETLEDVRPYLKNF 29 (320)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9998569999778999999998
No 384
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=20.41 E-value=50 Score=12.47 Aligned_cols=81 Identities=15% Similarity=0.154 Sum_probs=44.2
Q ss_pred CCHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEECCCHHHHHCCCCCCHHHHHHHH
Q ss_conf 41146789998740134432000001352201247898863322101110020000111201232143688989999999
Q gi|255764472|r 312 AYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERL 391 (469)
Q Consensus 312 ~e~~~~~i~~~r~~~p~~~i~tdiIvGfPgETeedf~~Tl~~i~~~~~~~~~vf~yS~r~gT~Aa~m~~qV~~~vk~~R~ 391 (469)
.....++++.+..=-.-+.+.|-++.==|+=-++--++.-+|+++-.|..+.=| -|.- ..+ .+.++..-+|.
T Consensus 248 I~sg~DaiE~ilAGAsaVQv~Ta~~~~G~~v~~~i~~eL~~~m~~~G~~si~e~-----~G~l--~~~-~~~~~~~~~r~ 319 (333)
T PRK07565 248 VHDAEDVIKMLLAGADVVMIASALLRHGPDYIGTILAGLEDWMERHGYESLSQF-----RGSM--SQK-NVPDPAAFERA 319 (333)
T ss_pred CCCHHHHHHHHHCCCCHHEEEHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHH-----CCCC--CCC-CCCCHHHHHHH
T ss_conf 598999999998098863362236653727999999999999998399989996-----1723--656-79983888999
Q ss_pred HHHHHHHHH
Q ss_conf 999999999
Q gi|255764472|r 392 LCLQKKLRE 400 (469)
Q Consensus 392 ~~l~~~~~~ 400 (469)
+.+.-+..+
T Consensus 320 ~~~~~~~~~ 328 (333)
T PRK07565 320 QYMKALSSY 328 (333)
T ss_pred HHHHHHHHC
T ss_conf 999999731
No 385
>TIGR01979 sufS cysteine desulfurases, SufS subfamily; InterPro: IPR010970 Cysteine desulphurases are pyridoxal-phosphate enzymes which catalyse the removal of sulphur from L-cysteine to form L-alanine and elemental sulphur. These enzymes have been shown to play an important role in the biosynthesis of iron-sulphur clusters, thionucleosides in tRNA, thiamine, biotin, lipoate and molydopterin This entry represents a subfamily of NifS-related cysteine desulphurases that are often involved in iron-sulphur cluster formation, which is needed for nitrogen fixation and other vital functions . Many of these enzymes, in addition to cysteine desulphurase activity, also show selenocysteine lyase activity where L-selenocysteine is converted to L-alanine and selenide . Some of these enzymes are much more specific for selenocysteine than cysteine and are thus believed to function in selenium metabolism rather than sulphur metabolism. Structural studies of the E. coli and Synechocystis enzymes indicate that they are homodimers which show a similar fold to other members of the alpha family of pyridoxal-phosphate enzymes .; GO: 0030170 pyridoxal phosphate binding, 0031071 cysteine desulfurase activity, 0006534 cysteine metabolic process.
Probab=20.40 E-value=50 Score=12.47 Aligned_cols=22 Identities=14% Similarity=0.027 Sum_probs=9.9
Q ss_pred HCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 1436889899999999999999
Q gi|255764472|r 377 NMLEQVDENVKAERLLCLQKKL 398 (469)
Q Consensus 377 ~m~~qV~~~vk~~R~~~l~~~~ 398 (469)
..-..+.-+-+.++-.+|.+-.
T Consensus 292 dYl~~iG~~~I~~~E~~L~~ya 313 (409)
T TIGR01979 292 DYLEKIGLEKIEAHEKELTAYA 313 (409)
T ss_pred HHHHHCCHHHHHHHHHHHHHHH
T ss_conf 9985238789999999999999
No 386
>PRK09620 hypothetical protein; Provisional
Probab=20.37 E-value=50 Score=12.47 Aligned_cols=33 Identities=21% Similarity=0.440 Sum_probs=19.3
Q ss_pred HHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHH
Q ss_conf 67899987401344320000013522012478988633
Q gi|255764472|r 316 RQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353 (469)
Q Consensus 316 ~~~i~~~r~~~p~~~i~tdiIvGfPgETeedf~~Tl~~ 353 (469)
-+++..+++..|+. ++|||--||..+-++.++-
T Consensus 133 pdIl~~i~~~~~~~-----~lVGFkaEt~~~~e~Li~~ 165 (229)
T PRK09620 133 PKVLKQIKQWDPET-----VLVGFKLESDVNEEELFER 165 (229)
T ss_pred HHHHHHHHHHCCCC-----EEEEEEECCCCCHHHHHHH
T ss_conf 79999987238998-----6999983788967899999
No 387
>COG0349 Rnd Ribonuclease D [Translation, ribosomal structure and biogenesis]
Probab=20.29 E-value=50 Score=12.45 Aligned_cols=33 Identities=18% Similarity=0.108 Sum_probs=21.2
Q ss_pred CCCCCCCCCCC---HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 33244681110---01221376410058899988763
Q gi|255764472|r 184 EGCDKFCTFCV---VPYTRGIEISRSLSQVVDEARKL 217 (469)
Q Consensus 184 ~GC~~~CsfC~---ip~~RG~~rSr~~~~Iv~ei~~l 217 (469)
=|+.-.|-||+ .++++ -.-|....++++++-..
T Consensus 89 ~g~~p~plfdTqiAa~l~g-~~~~~gl~~Lv~~ll~v 124 (361)
T COG0349 89 FGLLPTPLFDTQIAAKLAG-FGTSHGLADLVEELLGV 124 (361)
T ss_pred CCCCCCCHHHHHHHHHHCC-CCCCCCHHHHHHHHHCC
T ss_conf 1888773468999999809-86323299999999688
No 388
>PRK12398 pyruvoyl-dependent arginine decarboxylase; Provisional
Probab=20.28 E-value=50 Score=12.45 Aligned_cols=15 Identities=27% Similarity=0.410 Sum_probs=6.9
Q ss_pred CCCCCCEEEECCCCC
Q ss_conf 344320000013522
Q gi|255764472|r 327 PDIAISSDFIVGFPG 341 (469)
Q Consensus 327 p~~~i~tdiIvGfPg 341 (469)
|+-.+++.+-+|+|-
T Consensus 78 pg~~IsAavG~aip~ 92 (162)
T PRK12398 78 PGRTISASVGCALPQ 92 (162)
T ss_pred CCCEEEEEEEEEECC
T ss_conf 997788999998735
No 389
>KOG0995 consensus
Probab=20.24 E-value=50 Score=12.45 Aligned_cols=16 Identities=13% Similarity=0.085 Sum_probs=5.5
Q ss_pred HHHHCCCCCCCHHHHH
Q ss_conf 9873033344114678
Q gi|255764472|r 303 LKSMNRRHTAYEYRQI 318 (469)
Q Consensus 303 Lk~M~R~~~~e~~~~~ 318 (469)
+..|+-+|+...++.+
T Consensus 148 ~~a~gspH~WP~iL~m 163 (581)
T KOG0995 148 LQAAGSPHNWPHILGM 163 (581)
T ss_pred HCCCCCCCCCHHHHHH
T ss_conf 2158899862899999
No 390
>KOG2368 consensus
Probab=20.22 E-value=50 Score=12.44 Aligned_cols=60 Identities=27% Similarity=0.446 Sum_probs=39.4
Q ss_pred CCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCC-CCCCCCCHHHHH
Q ss_conf 7257874123324468111001221376410058899988763101331058731454113411344-431000216788
Q gi|255764472|r 175 GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLD-GEKCTFSDLLYS 253 (469)
Q Consensus 175 ~~~a~ikI~~GC~~~CsfC~ip~~RG~~rSr~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y~g~~~~-~~~~~l~~Ll~~ 253 (469)
+.+.|+...-|||+. |. ..++.+.+-++.|.+.|+-||-| |+.+. +.+-....+|+.
T Consensus 149 ~vRGYVScvvGCPye----------G~---v~P~kVa~V~k~ly~mGCyEiSL---------GDTIGvGTpgtm~~ML~~ 206 (316)
T KOG2368 149 RVRGYVSCVVGCPYE----------GA---VQPSKVAEVVKKLYEMGCYEISL---------GDTIGVGTPGTMKRMLDA 206 (316)
T ss_pred CCCEEEEEEECCCCC----------CC---CCHHHHHHHHHHHHHCCCEEEEC---------CCCCCCCCCHHHHHHHHH
T ss_conf 500378888658766----------87---48899999999998478679732---------661046895058999999
Q ss_pred HHC
Q ss_conf 620
Q gi|255764472|r 254 LSE 256 (469)
Q Consensus 254 l~~ 256 (469)
+.+
T Consensus 207 Vmk 209 (316)
T KOG2368 207 VMK 209 (316)
T ss_pred HHH
T ss_conf 987
No 391
>PRK03592 haloalkane dehalogenase; Provisional
Probab=20.21 E-value=50 Score=12.44 Aligned_cols=31 Identities=6% Similarity=0.067 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHC-CCCEEEEECCCCCEE
Q ss_conf 0058899988763101-331058731454113
Q gi|255764472|r 205 RSLSQVVDEARKLIDN-GVCEITLLGQNVNAW 235 (469)
Q Consensus 205 r~~~~Iv~ei~~l~~~-G~kEi~L~g~d~~~Y 235 (469)
+++++..+.+..+++. |...+.|+|.+.|..
T Consensus 74 y~~~~~a~dl~~ll~~Lg~~~~~lvGhS~Gg~ 105 (294)
T PRK03592 74 YTFADHRRYLDAFFDALDLRNVVLVLHDWGSA 105 (294)
T ss_pred CCHHHHHHHHHHHHHHCCCCCEEEEEECCCCH
T ss_conf 88999999999999976999879998688849
No 392
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=20.18 E-value=51 Score=12.44 Aligned_cols=59 Identities=24% Similarity=0.316 Sum_probs=35.4
Q ss_pred CCCCCCCCHHHHHHHCCC-CCCC-CCCCCCCCCCCC------CHHHHHHCCCCCCCCCEEEEEECCCH
Q ss_conf 443100021678862044-4300-135442100010------00366520221112201332111457
Q gi|255764472|r 241 DGEKCTFSDLLYSLSEIK-GLVR-LRYTTSHPRDMS------DCLIKAHGDLDVLMPYLHLPVQSGSD 300 (469)
Q Consensus 241 ~~~~~~l~~Ll~~l~~i~-~~~r-iR~~s~~P~~~~------~~li~~~~~~~~i~~~lhlpiQSgs~ 300 (469)
.....+|..+++.|.+.+ |..- ++-.--||..++ .++.+++++ +++.|+||+.-|--.+
T Consensus 153 ~t~~ldf~~~~~~L~~a~~gsvvlLh~ccHNPTG~D~t~eqW~~ia~~~~~-k~l~p~~D~AYqGf~s 219 (397)
T PRK09257 153 ATKGLDFDGMLADLSQAPAGDVVLLHGCCHNPTGADLTPEQWDEVAELLKE-RGLIPFLDIAYQGFGD 219 (397)
T ss_pred CCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHH-CCCEEEEEHHCCCCCC
T ss_conf 457628999999998289999899725667988999899999999999996-6986888400143346
No 393
>smart00545 JmjN Small domain found in the jumonji family of transcription factors. To date, this domain always co-occurs with the JmjC domain (although the reverse is not true).
Probab=20.18 E-value=42 Score=13.02 Aligned_cols=17 Identities=24% Similarity=0.464 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 12478988633221011
Q gi|255764472|r 343 TDDDFRATMDLVDKIGY 359 (469)
Q Consensus 343 Teedf~~Tl~~i~~~~~ 359 (469)
|+|+|++.+.|+++++.
T Consensus 8 T~eEF~Dp~~yi~~i~~ 24 (42)
T smart00545 8 TMEEFKDPLAYISKIRP 24 (42)
T ss_pred CHHHHHCHHHHHHHHHH
T ss_conf 99998399999999999
No 394
>TIGR01582 FDH-beta formate dehydrogenase, beta subunit; InterPro: IPR006470 The sequences in this group represent the beta subunit of the gamma-proteobacterial formate dehydrogenase. This subunit contains four 4Fe-4S clusters and is involved in transmitting electrons from the alpha subunit (IPR006443 from INTERPRO) at the periplasmic space to the gamma subunit which spans the cytoplasmic membrane . In addition to the gamma proteobacteria, a sequence from Aquifex aolicus falls within this group. This appears to be the case for the alpha, gamma and epsilon (accessory protein IPR006452 from INTERPRO) chains as well. ; GO: 0008863 formate dehydrogenase activity, 0045333 cellular respiration, 0016021 integral to membrane.
Probab=20.18 E-value=36 Score=13.55 Aligned_cols=45 Identities=20% Similarity=0.323 Sum_probs=23.0
Q ss_pred CCCCCC-------------CCCCCHHHHHH------------HHHHHHHHHHHHH----HHHHHHCCCCEEEEECCCCCE
Q ss_conf 332446-------------81110012213------------7641005889998----876310133105873145411
Q gi|255764472|r 184 EGCDKF-------------CTFCVVPYTRG------------IEISRSLSQVVDE----ARKLIDNGVCEITLLGQNVNA 234 (469)
Q Consensus 184 ~GC~~~-------------CsfC~ip~~RG------------~~rSr~~~~Iv~e----i~~l~~~G~kEi~L~g~d~~~ 234 (469)
.||||. ||||+=.-+-| .++-=.-|+-.+. |+.|-++||. |-+.
T Consensus 144 ~GCPFnIPR~~k~dnr~yKCtlC~DRVsvG~ePACvKtCPT~ai~FG~KEdM~~~a~~~vadLK~RGY~-------NAgL 216 (293)
T TIGR01582 144 VGCPFNIPRIDKVDNRAYKCTLCIDRVSVGQEPACVKTCPTNAISFGFKEDMKERAEKRVADLKSRGYE-------NAGL 216 (293)
T ss_pred CCCCCCCCCCCCCCCCCEEECCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC-------CCCC
T ss_conf 587888888874457511104540000137896500127764311587578999987888887634888-------8875
Q ss_pred E
Q ss_conf 3
Q gi|255764472|r 235 W 235 (469)
Q Consensus 235 Y 235 (469)
|
T Consensus 217 Y 217 (293)
T TIGR01582 217 Y 217 (293)
T ss_pred C
T ss_conf 2
No 395
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=20.15 E-value=51 Score=12.43 Aligned_cols=19 Identities=11% Similarity=0.127 Sum_probs=8.3
Q ss_pred EEECCCCCHHHHHHHHHHH
Q ss_conf 9927832507999999999
Q gi|255764472|r 66 VLNTCHIREKAAEKVYSFL 84 (469)
Q Consensus 66 iINTCsV~~~ae~k~~~~i 84 (469)
++|.+.+.+..-+...+.|
T Consensus 71 ~~N~~g~~n~g~~~~~~~l 89 (289)
T cd02810 71 ILNSFGLPNLGLDVWLQDI 89 (289)
T ss_pred EECCCCCCCCCHHHHHHHH
T ss_conf 6215546787889999999
No 396
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=20.03 E-value=25 Score=14.78 Aligned_cols=20 Identities=35% Similarity=0.599 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHCCCCEEEEEC
Q ss_conf 899988763101331058731
Q gi|255764472|r 209 QVVDEARKLIDNGVCEITLLG 229 (469)
Q Consensus 209 ~Iv~ei~~l~~~G~kEi~L~g 229 (469)
.+-.+++.+.+.|+ +|+|.|
T Consensus 102 Kvh~~v~~~~~~G~-~iIliG 121 (294)
T COG0761 102 KVHKEVERYAREGY-EIILIG 121 (294)
T ss_pred HHHHHHHHHHHCCC-EEEEEC
T ss_conf 99999999985898-899972
Done!