HHsearch alignment for GI: 255764472 and conserved domain: pfam04055
>pfam04055 Radical_SAM Radical SAM superfamily. Radical SAM proteins catalyse diverse reactions, including unusual methylations, isomerisation, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation.
Probab=99.68 E-value=2.4e-16 Score=141.71 Aligned_cols=161 Identities=29% Similarity=0.502 Sum_probs=121.6
Q ss_pred EEECCCCCCCCCCCCHHHH--HHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCCCHHHHHHHCC
Q ss_conf 7412332446811100122--13764100588999887631013310587314541134113444310002167886204
Q gi|255764472|r 180 LTIQEGCDKFCTFCVVPYT--RGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEI 257 (469)
Q Consensus 180 ikI~~GC~~~CsfC~ip~~--RG~~rSr~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y~g~~~~~~~~~l~~Ll~~l~~i 257 (469)
T Consensus 1 ~~~~~gC~~~C~fC~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~gg~p~~~---------~~~~~~~~~~~~~ 71 (165)
T pfam04055 1 IIITPGCNLRCTYCAFPSIRARGKGRELSPEEILEEAKELARLGVEVVILTGGEPLLL---------PDLVELLERLLKL 71 (165)
T ss_pred CEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCC---------HHHHHHHHHHHHH
T ss_conf 9889374877968999785788865226999999999888745985999931676665---------2777778887653
Q ss_pred C--CCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEE
Q ss_conf 4--43001354421000100036652022111220133211145789987303334411467899987401344320000
Q gi|255764472|r 258 K--GLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDF 335 (469)
Q Consensus 258 ~--~~~riR~~s~~P~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~~~r~~~p~~~i~tdi 335 (469)
T Consensus 72 ~~~~~~~~~~~-t~~~~~~~~~~~~l~~~g--~~~i~~~ie~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--gi~~~~~~ 146 (165)
T pfam04055 72 EELEGIRITLE-TNGTLLDEELLEELKEAG--LDRVSISLQSGDDEVLKIINRGHTFEEVLEALELLREA--GIPVVVDN 146 (165)
T ss_pred CCCCCEEEEEE-EECCCCCHHHHHHHHHCC--CCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHC--CCCEEEEE
T ss_conf 14676489999-851433104568999719--85222463559999999857999989999999999987--99788999
Q ss_pred ECCCCCCHHHHHHHHHHHH
Q ss_conf 0135220124789886332
Q gi|255764472|r 336 IVGFPGETDDDFRATMDLV 354 (469)
Q Consensus 336 IvGfPgETeedf~~Tl~~i 354 (469)
T Consensus 147 i~~~~~e~~~~~~~~~~~i 165 (165)
T pfam04055 147 IVGLPGENDEDLEETLELL 165 (165)
T ss_pred EEECCCCCHHHHHHHHHHC
T ss_conf 9979999999999996039