Query gi|255764472|ref|YP_003064841.2| 2-methylthioadenine synthetase (miaB-like) protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 469 No_of_seqs 165 out of 4229 Neff 6.2 Searched_HMMs 23785 Date Mon May 30 10:50:36 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 255764472.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2qgq_A Protein TM_1862; alpha- 100.0 0 0 540.3 21.8 291 175-469 3-297 (304) 2 3iix_A Biotin synthetase, puta 99.9 9.6E-24 4E-28 195.3 13.5 193 177-386 54-248 (348) 3 1olt_A Oxygen-independent copr 99.9 1.8E-22 7.6E-27 185.8 11.2 192 175-378 52-253 (457) 4 1r30_A Biotin synthase; SAM ra 99.6 2.9E-14 1.2E-18 124.6 11.9 192 178-386 67-265 (369) 5 3c8f_A Pyruvate formate-lyase 99.0 6.5E-09 2.7E-13 84.6 11.3 176 176-369 22-203 (245) 6 1tv8_A MOAA, molybdenum cofact 98.8 1.4E-07 5.8E-12 74.7 13.1 196 178-390 16-219 (340) 7 2a5h_A L-lysine 2,3-aminomutas 98.8 1.3E-07 5.6E-12 74.8 12.7 179 175-373 114-298 (416) 8 2yx0_A Radical SAM enzyme; pre 98.3 4.7E-06 2E-10 63.3 8.6 172 182-369 77-276 (342) 9 2z2u_A UPF0026 protein MJ0257; 97.8 5.1E-05 2.1E-09 55.6 6.8 167 181-370 57-255 (311) 10 1req_A Methylmalonyl-COA mutas 94.7 0.25 1.1E-05 28.0 10.7 15 409-423 592-606 (727) 11 3can_A Pyruvate-formate lyase- 94.3 0.26 1.1E-05 27.9 8.3 116 247-371 21-138 (182) 12 1yvc_A MRR5; structure, autost 93.9 0.2 8.3E-06 28.8 7.0 56 410-469 15-70 (70) 13 2xij_A Methylmalonyl-COA mutas 93.5 0.42 1.8E-05 26.3 8.9 14 410-423 601-614 (762) 14 2yxb_A Coenzyme B12-dependent 91.6 0.72 3E-05 24.6 9.8 96 26-131 20-129 (161) 15 1yez_A MM1357; MAR30, structur 90.6 0.72 3E-05 24.6 6.5 55 410-468 13-67 (68) 16 3neh_A Renal dipeptidase famil 82.9 2.3 9.5E-05 20.9 7.9 67 266-340 200-268 (318) 17 1ccw_A Protein (glutamate muta 80.6 2.7 0.00011 20.3 8.4 99 25-132 4-121 (137) 18 3ivs_A Homocitrate synthase, m 72.6 4.3 0.00018 18.8 6.5 27 31-57 53-79 (423) 19 3ezx_A MMCP 1, monomethylamine 69.5 5 0.00021 18.3 4.5 74 251-340 112-185 (215) 20 3kp1_A D-ornithine aminomutase 67.8 5.4 0.00023 18.1 6.3 47 315-376 677-723 (763) 21 2zvr_A Uncharacterized protein 64.7 6.2 0.00026 17.6 5.1 28 338-365 235-262 (290) 22 2jjq_A Uncharacterized RNA met 64.3 6.3 0.00026 17.6 4.6 14 206-219 163-176 (425) 23 2p10_A MLL9387 protein; putati 62.4 6.7 0.00028 17.3 8.0 39 313-355 212-251 (286) 24 2rag_A Dipeptidase; aminohydro 57.1 8.2 0.00035 16.7 3.9 24 264-287 254-277 (417) 25 1rd5_A Tryptophan synthase alp 56.7 8.1 0.00034 16.8 3.3 38 311-353 185-222 (262) 26 3ly0_A Dipeptidase AC. metallo 54.3 9 0.00038 16.4 5.2 66 264-335 237-307 (364) 27 1nqk_A Alkanesulfonate monooxy 54.1 8.1 0.00034 16.7 2.9 58 310-376 307-366 (381) 28 1i60_A IOLI protein; beta barr 53.8 9.2 0.00039 16.3 3.3 25 338-362 218-242 (278) 29 3npg_A Uncharacterized DUF364 52.8 9.6 0.0004 16.2 3.5 38 178-215 33-75 (249) 30 2qw5_A Xylose isomerase-like T 51.8 9.9 0.00041 16.1 6.1 38 338-376 254-292 (335) 31 2gjx_A Beta-hexosaminidase alp 49.7 9.2 0.00039 16.3 2.6 17 309-325 211-227 (507) 32 3fst_A 5,10-methylenetetrahydr 48.3 11 0.00045 15.8 2.8 24 206-229 95-118 (304) 33 3l5l_A Xenobiotic reductase A; 47.8 10 0.00044 15.9 2.7 113 207-326 153-294 (363) 34 3cqj_A L-ribulose-5-phosphate 47.7 11 0.00048 15.7 6.8 22 340-361 236-257 (295) 35 1xrs_B D-lysine 5,6-aminomutas 47.1 12 0.00049 15.6 6.0 81 271-377 166-247 (262) 36 2nac_A NAD-dependent formate d 46.6 12 0.00049 15.5 3.7 39 30-71 48-99 (393) 37 2h1q_A Hypothetical protein; Z 46.3 6.3 0.00027 17.6 1.4 38 178-215 47-87 (270) 38 2i5g_A Amidohydrolase; NYSGXRC 43.1 13 0.00055 15.2 7.7 221 43-340 24-255 (325) 39 1qgu_B Protein (nitrogenase mo 41.5 12 0.00049 15.6 2.1 38 76-119 125-162 (519) 40 1w5q_A Delta-aminolevulinic ac 40.2 15 0.00061 14.9 3.1 35 195-230 54-88 (337) 41 3obk_A Delta-aminolevulinic ac 40.1 12 0.0005 15.5 2.0 36 194-230 64-99 (360) 42 1m1n_B Nitrogenase molybdenum- 39.9 13 0.00053 15.3 2.1 38 76-119 126-163 (522) 43 3i9v_6 NADH-quinone oxidoreduc 39.8 2.9 0.00012 20.0 -1.2 74 25-110 34-113 (181) 44 2btv_A T2A, T2B, protein (VP3 39.5 15 0.00062 14.8 2.6 22 371-392 733-754 (901) 45 1yht_A DSPB; beta barrel, hydr 38.5 15 0.00065 14.7 2.8 19 205-223 92-110 (367) 46 1fui_A L-fucose isomerase; ket 38.0 16 0.00066 14.6 4.6 47 61-119 52-98 (591) 47 1itu_A Renal dipeptidase; glyc 37.8 16 0.00066 14.6 5.9 66 263-335 222-289 (369) 48 1tmy_A CHEY protein, TMY; chem 37.6 16 0.00067 14.6 8.2 30 23-56 1-30 (120) 49 2fz5_A Flavodoxin; alpha/beta 36.8 16 0.00068 14.5 6.2 31 41-71 17-56 (137) 50 3k7p_A Ribose 5-phosphate isom 36.1 16 0.00066 14.6 2.1 43 12-57 10-53 (179) 51 2wte_A CSA3; antiviral protein 36.0 17 0.0007 14.4 5.0 52 25-87 8-59 (244) 52 1pv8_A Delta-aminolevulinic ac 35.7 14 0.0006 14.9 1.8 24 206-229 57-80 (330) 53 1yir_A Naprtase 2, nicotinate 35.6 13 0.00053 15.3 1.5 106 262-394 285-396 (408) 54 1jak_A Beta-N-acetylhexosamini 35.3 17 0.00072 14.3 3.6 16 310-325 228-243 (512) 55 3f6c_A Positive transcription 35.1 17 0.00072 14.3 7.3 15 42-56 15-29 (134) 56 2qxy_A Response regulator; reg 35.0 17 0.00073 14.3 7.0 18 39-56 15-32 (142) 57 1c7s_A Beta-N-acetylhexosamini 34.9 17 0.00073 14.3 2.7 19 205-223 397-415 (858) 58 1h7n_A 5-aminolaevulinic acid 34.7 16 0.00069 14.5 2.0 34 195-229 57-90 (342) 59 3nav_A Tryptophan synthase alp 34.4 18 0.00074 14.2 4.0 36 313-353 194-229 (271) 60 3id7_A Dipeptidase; streptomyc 34.1 18 0.00075 14.2 7.0 24 264-287 216-239 (400) 61 3dx5_A Uncharacterized protein 33.9 18 0.00075 14.2 3.7 19 339-357 228-246 (286) 62 1qop_A Tryptophan synthase alp 33.1 18 0.00078 14.1 3.8 35 313-352 191-225 (268) 63 2wqq_A Alpha-2,3-/2,8-sialyltr 32.9 18 0.00078 14.1 2.0 22 214-235 137-158 (291) 64 1ydn_A Hydroxymethylglutaryl-C 31.8 19 0.00081 13.9 7.3 28 30-57 17-44 (295) 65 1l6s_A Porphobilinogen synthas 31.8 16 0.00065 14.6 1.5 24 206-229 56-79 (323) 66 2x7l_M HIV REV; nuclear export 31.1 20 0.00083 13.9 4.7 67 338-415 2-68 (115) 67 3b40_A PVDM, probable dipeptid 30.8 20 0.00084 13.8 3.7 25 263-287 237-261 (417) 68 1f07_A Coenzyme F420-dependent 30.0 21 0.00087 13.7 6.4 53 298-357 265-317 (321) 69 1ovm_A Indole-3-pyruvate decar 29.9 21 0.00087 13.7 3.1 11 101-111 95-105 (552) 70 1mio_B Nitrogenase molybdenum 29.7 21 0.00088 13.7 2.2 38 76-119 80-117 (458) 71 3ble_A Citramalate synthase fr 29.3 21 0.00089 13.6 6.7 43 206-256 167-209 (337) 72 3fhk_A UPF0403 protein YPHP; d 29.2 21 0.00089 13.6 2.0 21 41-61 16-36 (147) 73 1w1z_A Delta-aminolevulinic ac 28.5 18 0.00074 14.2 1.3 34 195-229 52-85 (328) 74 3if8_A Hzwilch, protein zwilch 28.5 22 0.00092 13.5 2.5 71 290-373 253-325 (339) 75 1l6n_A GAG polyprotein; matrix 28.4 6.7 0.00028 17.4 -0.9 10 296-305 145-154 (289) 76 2cw6_A Hydroxymethylglutaryl-C 28.4 22 0.00092 13.5 7.7 35 23-57 2-45 (298) 77 1u5t_A Appears to BE functiona 28.1 22 0.00093 13.5 3.2 49 308-357 127-179 (233) 78 2xdq_A Light-independent proto 27.7 22 0.00094 13.4 2.6 39 76-120 81-119 (460) 79 1d5r_A Phosphoinositide phosph 27.1 19 0.0008 14.0 1.3 21 207-227 95-115 (324) 80 1v93_A 5,10-methylenetetrahydr 27.0 23 0.00097 13.4 6.4 24 206-229 84-107 (296) 81 1ydo_A HMG-COA lyase; TIM-barr 26.6 23 0.00098 13.3 7.4 35 23-57 3-46 (307) 82 1luc_A Bacterial luciferase; m 26.5 24 0.00099 13.3 5.7 44 310-357 302-347 (355) 83 1vi7_A Hypothetical protein YI 26.2 24 0.001 13.3 2.0 14 336-349 177-190 (217) 84 3gwq_A D-serine deaminase; YP_ 26.2 24 0.001 13.3 6.7 18 211-228 103-120 (426) 85 3bij_A Uncharacterized protein 26.1 24 0.001 13.2 6.9 72 23-111 1-87 (285) 86 1ujp_A Tryptophan synthase alp 25.9 24 0.001 13.2 3.8 32 313-349 188-219 (271) 87 3ktc_A Xylose isomerase; putat 25.6 24 0.001 13.2 3.4 27 340-366 244-271 (333) 88 2p2v_A Alpha-2,3-sialyltransfe 25.4 25 0.001 13.2 1.8 24 211-234 152-175 (288) 89 1ed1_A GAG polyprotein, SIV MA 25.2 12 0.0005 15.5 -0.0 69 245-324 29-106 (135) 90 2yys_A Proline iminopeptidase- 25.2 23 0.00096 13.4 1.4 32 204-235 75-107 (286) 91 1q7z_A 5-methyltetrahydrofolat 25.1 25 0.001 13.1 10.9 22 203-224 335-356 (566) 92 2rjn_A Response regulator rece 24.8 25 0.0011 13.1 6.2 14 316-329 67-80 (154) 93 3kws_A Putative sugar isomeras 24.8 25 0.0011 13.1 5.7 24 338-361 232-257 (287) 94 1xim_A D-xylose isomerase; iso 24.6 25 0.0011 13.1 2.2 25 203-227 111-135 (393) 95 3gve_A YFKN protein; alpha-bet 24.3 26 0.0011 13.0 3.6 53 205-258 191-243 (341) 96 2pby_A Glutaminase; secsg, rik 24.3 23 0.00099 13.3 1.3 12 359-370 271-282 (308) 97 3hgj_A Chromate reductase; TIM 22.3 28 0.0012 12.7 2.6 115 207-326 147-287 (349) 98 1vrd_A Inosine-5'-monophosphat 22.2 28 0.0012 12.7 5.0 20 208-227 236-255 (494) 99 2xed_A Putative maleate isomer 21.7 29 0.0012 12.7 3.3 35 250-285 137-171 (273) 100 3aek_B Light-independent proto 21.5 29 0.0012 12.6 4.3 41 73-119 66-106 (525) 101 3gdm_A Orotidine 5'-phosphate 21.1 29 0.0012 12.6 1.7 23 335-357 231-254 (267) 102 3eww_A Ompdecase, orotidine-5' 20.6 30 0.0013 12.5 2.8 14 122-135 55-69 (260) 103 2gk4_A Conserved hypothetical 20.5 30 0.0013 12.5 1.3 30 318-352 144-173 (232) 104 1ub0_A THID, phosphomethylpyri 20.2 31 0.0013 12.4 4.6 29 205-233 150-178 (258) 105 1vkf_A Glycerol uptake operon 20.2 31 0.0013 12.4 2.6 18 334-351 151-168 (188) No 1 >2qgq_A Protein TM_1862; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CXS; 2.00A {Thermotoga maritima MSB8} Probab=100.00 E-value=0 Score=540.32 Aligned_cols=291 Identities=33% Similarity=0.536 Sum_probs=274.0 Q ss_pred CCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCCCHHHHHH Q ss_conf 72578741233244681110012213764100588999887631013310587314541134113444310002167886 Q gi|255764472|r 175 GVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254 (469) Q Consensus 175 ~~~a~ikI~~GC~~~CsfC~ip~~RG~~rSr~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y~g~~~~~~~~~l~~Ll~~l 254 (469) +++|||+||||||++||||++|++||++||||+++|++|++.+++.|++||+|+|+|++.| +.+.. ....+.+|+..+ T Consensus 3 ~~~A~i~isrGC~~~CsFC~ip~~rG~~rsr~~e~Ii~Ei~~l~~~G~kei~l~~~d~~~~-~~~~~-~~~~~~~L~~~~ 80 (304) T 2qgq_A 3 RPYAYVKISDGCDRGCTFCSIPSFKGSLRSRSIEDITREVEDLLKEGKKEIILVAQDTTSY-GIDLY-RKQALPDLLRRL 80 (304) T ss_dssp CSEEEEESBCCC-------------CCCCBCCHHHHHHHHHHHHHTTCCEEEEECTTGGGT-THHHH-SSCCHHHHHHHH T ss_pred CCEEEEEECCCCCCCCEECEEEEEECCEEEECHHHHHHHHHHHHHCCCEEEEEEEECCCCC-CCCCC-CCHHHHHHHHHH T ss_conf 8619989776989987755562014983771999999999999986990999985646655-54244-511489999987 Q ss_pred HCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEE Q ss_conf 20444300135442100010003665202211122013321114578998730333441146789998740134432000 Q gi|255764472|r 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSD 334 (469) Q Consensus 255 ~~i~~~~riR~~s~~P~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~~~r~~~p~~~i~td 334 (469) .+..+..|+|+++++|..+++++++++++.+++|+|+|+|+||||++||++|||+|+.+++.++++.+|+..|++.++|| T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~igieSgs~~vLk~m~r~~t~e~~~~~v~~ir~~~p~~~i~t~ 160 (304) T 2qgq_A 81 NSLNGEFWIRVMYLHPDHLTEEIISAMLELDKVVKYFDVPVQHGSDKILKLMGRTKSSEELKKMLSSIRERFPDAVLRTS 160 (304) T ss_dssp HTSSSSCEEEECCCCGGGCCHHHHHHHHHCTTBCCEEECCCBCSCHHHHHHTTCCSCHHHHHHHHHHHHHHCTTCEEEEE T ss_pred HCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEE T ss_conf 23688358994035843677887776764484646774064327879998750476455544588767664899557635 Q ss_pred EECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEECCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE Q ss_conf 00135220124789886332210111002000011120123214368898999999999999999999999998579789 Q gi|255764472|r 335 FIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQII 414 (469) Q Consensus 335 iIvGfPgETeedf~~Tl~~i~~~~~~~~~vf~yS~r~gT~Aa~m~~qV~~~vk~~R~~~l~~~~~~~~~~~~~~~iG~~~ 414 (469) |||||||||+|||++|++|+++++|+++|+|+|||||||||+.|++||++++|++|+++|++++.++..+++++++|+++ T Consensus 161 fIvGfPgET~edf~~T~~fl~~~~~d~~~i~~~sp~pGT~a~~~~~~v~~~~k~~r~~~l~~~~~~~~~~~~~~~~g~~~ 240 (304) T 2qgq_A 161 IIVGFPGETEEDFEELKQFVEEIQFDKLGAFVYSDEEGTVAFNLKEKVDPEMAKRRQEELLLLQAEISNSRLDRFVGKKL 240 (304) T ss_dssp EEECCTTCCHHHHHHHHHHHHHHCCSEEEEEECCC-----------CCCHHHHHHHHHHHHHHHHHHHHHHHHTTTTCEE T ss_pred EEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE T ss_conf 75678987689999999999856978330024256699766663678997999999999999987654577898569299 Q ss_pred EEEEECCCCCCCEEEEECCCCCE----EEECCCCCCCCCEEEEEEEEEECCEEEEEEEC Q ss_conf 99984256808689999878628----89738876768889999998308738999949 Q gi|255764472|r 415 EVLIEKHGKEKGKLVGRSPWLQS----VVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469 (469) Q Consensus 415 ~Vlve~~~~~~~~~~G~t~~~~~----V~~~~~~~~~G~~v~V~I~~~~~~~L~G~vi~ 469 (469) +||+|+. +++.+.||+.+|.+ |++.++...+|++++|+|+++..++|+|++|. T Consensus 241 ~vlve~~--~~~~~~Gr~~~~~p~~~~vv~~~~~~~~G~~v~v~I~~~~~~~L~G~~i~ 297 (304) T 2qgq_A 241 KFLVEGK--EGKFLVGRTWTEAPEVDGVVFVRGKGKIGDFLEVVIKEHDEYDMWGSVIL 297 (304) T ss_dssp EEEEEEE--ETTEEEEEETTCCTTTSCCEEEESCCCTTCEEEEEEEEEETTEEEEEEC- T ss_pred EEEEEEC--CCCEEEEECCCCCCCCCEEEEECCCCCCCCEEEEEEEECCCCCEEEEEEE T ss_conf 9999935--18999988888785563479608987899989999997625508999999 No 2 >3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A* Probab=99.91 E-value=9.6e-24 Score=195.33 Aligned_cols=193 Identities=15% Similarity=0.179 Sum_probs=154.0 Q ss_pred EEEEEECCCCCCCCCCCCHHHHHHHHHH--HHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCCCHHHHHH Q ss_conf 5787412332446811100122137641--00588999887631013310587314541134113444310002167886 Q gi|255764472|r 177 TAFLTIQEGCDKFCTFCVVPYTRGIEIS--RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSL 254 (469) Q Consensus 177 ~a~ikI~~GC~~~CsfC~ip~~RG~~rS--r~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y~g~~~~~~~~~l~~Ll~~l 254 (469) .+.|.+++||++.|+||..+...|..++ .++++|+++++.+.+.|+++|.++|-+. .......+.++++.+ T Consensus 54 ~~~I~~Sn~C~~~C~fC~~~~~~~~~~~~~ls~eeI~~~~~~~~~~G~~~i~l~~g~~-------~~~~~~~~~~~i~~i 126 (348) T 3iix_A 54 RAIIEFSNVCRKNCLYCGLRRDNKNLKRYRMTPEEIVERARLAVQFGAKTIVLQSGED-------PYXMPDVISDIVKEI 126 (348) T ss_dssp EEEEEEECCCSCCCTTCTTCTTCCSSCCCBCCHHHHHHHHHHHHHTTCSEEEEEESCC-------GGGTTHHHHHHHHHH T ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCC-------CCCCHHHHHHHHHHC T ss_conf 9988865888998914998836999766158999999999999981992899825888-------766489999998740 Q ss_pred HCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEE Q ss_conf 20444300135442100010003665202211122013321114578998730333441146789998740134432000 Q gi|255764472|r 255 SEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSD 334 (469) Q Consensus 255 ~~i~~~~riR~~s~~P~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~~~r~~~p~~~i~td 334 (469) .+..-...+ ....++++.++.+++.+ +..+++++|++++.+++.|+++++.+++++.++.++++ |+.+.++ T Consensus 127 ~~~~~~i~~-----~~g~~~~e~l~~L~~aG--~~~~~~~~et~~~~~~~~i~~~~~~~~~~~~i~~~~~~--Gi~v~~~ 197 (348) T 3iix_A 127 KKMGVAVTL-----SLGEWPREYYEKWKEAG--ADRYLLRHETANPVLHRKLRPDTSFENRLNCLLTLKEL--GYETGAG 197 (348) T ss_dssp HTTSCEEEE-----ECCCCCHHHHHHHHHHT--CCEEECCCBCSCHHHHHHHSTTSCHHHHHHHHHHHHHT--TCEEEEC T ss_pred CCCCEEEEE-----CCCCCHHHHHHHHHHHC--CCEEEECHHHCCHHHEEECCCCCCCCHHHHHHHHHHHC--CCEEEEE T ss_conf 333212320-----24543089999999828--96798563443402122011477731246776677624--9727888 Q ss_pred EECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEECCCHHHHHCCCCCCHHH Q ss_conf 0013522012478988633221011100200001112012321436889899 Q gi|255764472|r 335 FIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENV 386 (469) Q Consensus 335 iIvGfPgETeedf~~Tl~~i~~~~~~~~~vf~yS~r~gT~Aa~m~~qV~~~v 386 (469) +|+|+||||.||+.++++++++++++.+++++|.|.||||.++.+ .+++.. T Consensus 198 ~i~GlpgEt~ed~~~~l~~lr~l~~~~~~~~~f~P~pgTpl~~~~-~~~~~~ 248 (348) T 3iix_A 198 SMVGLPGQTIDDLVDDLLFLKEHDFDMVGIGPFIPHPDTPLANEK-KGDFTL 248 (348) T ss_dssp BEESCTTCCHHHHHHHHHHHHHHTCSEECCEECCCCTTSTTTTSC-CCCHHH T ss_pred EEEECCCCCHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCC-CCCHHH T ss_conf 999459999999999999997279988989866751999765689-959999 No 3 >1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4S cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2 Probab=99.88 E-value=1.8e-22 Score=185.83 Aligned_cols=192 Identities=17% Similarity=0.231 Sum_probs=141.8 Q ss_pred CCEEEEEECCCCCCCCCCCCHHHHHH---HHHHHHHHHHHHHHHHHHHC-CCCEEEEECCCCCEEEECCCCC--CCCCCC Q ss_conf 72578741233244681110012213---76410058899988763101-3310587314541134113444--310002 Q gi|255764472|r 175 GVTAFLTIQEGCDKFCTFCVVPYTRG---IEISRSLSQVVDEARKLIDN-GVCEITLLGQNVNAWRGKGLDG--EKCTFS 248 (469) Q Consensus 175 ~~~a~ikI~~GC~~~CsfC~ip~~RG---~~rSr~~~~Iv~ei~~l~~~-G~kEi~L~g~d~~~Y~g~~~~~--~~~~l~ 248 (469) +..-||-|= =|++.|+||..+...+ ....+-++.+++|++..... +-+.|. . .|.|.+.++ ....+. T Consensus 52 plsLYiHIP-FC~~~C~yC~~~~~~~~~~~~~~~Yl~~L~~Ei~~~a~~~~~~~v~-----~-i~~GGGTpt~L~~~~l~ 124 (457) T 1olt_A 52 PLSLYVHIP-FCHKLCYFCGCNKIVTRQQHKADQYLDALEQEIVHRAPLFAGRHVS-----Q-LHWGGGTPTYLNKAQIS 124 (457) T ss_dssp CEEEEEEEC-EESSCCTTCCSSCEECSCTHHHHHHHHHHHHHHHHHGGGGTTCCEE-----E-EEEEESCGGGSCHHHHH T ss_pred CEEEEEECC-CCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEE-----E-EEECCCCCCCCCHHHHH T ss_conf 649999708-9898899999824558886619999999999999965563899745-----9-99828750448999999 Q ss_pred HHHHHHHCCCC---CCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHH Q ss_conf 16788620444---300135442100010003665202211122013321114578998730333441146789998740 Q gi|255764472|r 249 DLLYSLSEIKG---LVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSV 325 (469) Q Consensus 249 ~Ll~~l~~i~~---~~riR~~s~~P~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~~~r~~ 325 (469) +|+..+.+... ...+.+ .++|..++++.++.+++.+ |..+++++||+++.||+.|||.++.+++.++++.+|+. T Consensus 125 ~l~~~l~~~f~~~~~~e~ti-E~~P~~~~~~~l~~l~~~G--~nRiSlGvQsfd~~vlk~i~R~~~~e~~~~~i~~~r~~ 201 (457) T 1olt_A 125 RLMKLLRENFQFNADAEISI-EVDPREIELDVLDHLRAEG--FNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHAREI 201 (457) T ss_dssp HHHHHHHHHSCEEEEEEEEE-EECSSSCCTHHHHHHHHTT--CCEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHT T ss_pred HHHHHHHHHCCCCCCEEEEE-EECCCCCCHHHHHHHHHCC--CCEEEECCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHH T ss_conf 99999998647787707999-8259987176799997379--98799607869779885621467388899999999984 Q ss_pred CCCC-CCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEECCCHHHHHC Q ss_conf 1344-3200000135220124789886332210111002000011120123214 Q gi|255764472|r 326 RPDI-AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNM 378 (469) Q Consensus 326 ~p~~-~i~tdiIvGfPgETeedf~~Tl~~i~~~~~~~~~vf~yS~r~gT~Aa~m 378 (469) +. .+++|+|+|+||||+|+|++|++.+.+++++++.+|+|+.+|+|.+... T Consensus 202 --g~~~i~~DLI~GlPgqt~e~~~~tl~~~~~l~pd~i~~y~~~~~p~~~~~q~ 253 (457) T 1olt_A 202 --GFTSTNIDLIYGLPKQTPESFAFTLKRVAELNPDRLSVFNYAHLPTIFAAQR 253 (457) T ss_dssp --TCCSCEEEEEESCTTCCHHHHHHHHHHHHHHCCSEEEEEECCCCTTTSGGGG T ss_pred --HCCEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECEECCCHHHHHH T ss_conf --0543723315779983377888899888840898113431100784277663 No 4 >1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster, transferase; HET: SAM DTB; 3.40A {Escherichia coli} SCOP: c.1.28.1 Probab=99.57 E-value=2.9e-14 Score=124.59 Aligned_cols=192 Identities=17% Similarity=0.225 Sum_probs=137.3 Q ss_pred EEEEE-CCCCCCCCCCCCHH-HHHH---HHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCCCHHHH Q ss_conf 78741-23324468111001-2213---7641005889998876310133105873145411341134443100021678 Q gi|255764472|r 178 AFLTI-QEGCDKFCTFCVVP-YTRG---IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252 (469) Q Consensus 178 a~ikI-~~GC~~~CsfC~ip-~~RG---~~rSr~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y~g~~~~~~~~~l~~Ll~ 252 (469) ..+.| +.||+..|+||..- ..+. +++-.++++|+++++...+.|++++.+.+-.-..+ +.++ ..+.++++ T Consensus 67 ~iin~~Tn~C~~~C~FCafs~~~~~~~~~~~l~s~eeI~e~a~~~~~~G~~~i~l~~g~~~~~-~~~~----~~~~~~i~ 141 (369) T 1r30_A 67 TLLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESARKAKAAGSTRFCMGAAWKNPH-ERDM----PYLEQMVQ 141 (369) T ss_dssp EEEEEECSCBSSCCSSCSCBTTSCTTCCCCCCCCHHHHHHHHHHHHHTTCSEEEEEECCSSCC-TTTH----HHHHHHHH T ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCC-CCHH----HHHHHHHH T ss_conf 687755899998892299734189998754668879999999989875997999995788887-0279----99999999 Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCC Q ss_conf 86204443001354421000100036652022111220133211145789987303334411467899987401344320 Q gi|255764472|r 253 SLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAIS 332 (469) Q Consensus 253 ~l~~i~~~~riR~~s~~P~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~~~r~~~p~~~i~ 332 (469) .+.+.. .++ .+.+..++++.+..+++.+ +..+++.+++ +++.++.+.++++.++.++.++.+++. |+.+. T Consensus 142 ~i~~~~--~~i---~~~~~~l~~e~l~~Lk~aG--~~~~~~~lEt-~~~~~~~~~~~~~~~~rl~~l~~a~~~--Gi~~~ 211 (369) T 1r30_A 142 GVKAMG--LEA---CMTLGTLSESQAQRLANAG--LDYYNHNLDT-SPEFYGNIITTRTYQERLDTLEKVRDA--GIKVC 211 (369) T ss_dssp HHHHTT--SEE---EEECSSCCHHHHHHHHHHC--CCEEECCCBS-CHHHHHHHCCSSCHHHHHHHHHHHHHH--HCEEE T ss_pred HHHHCC--CEE---EEECCCCCHHHHHHHHHHC--CCEECCCHHH-HHHHHCCCCCCCCHHHHHHHHHHHHHH--CCCCE T ss_conf 852047--547---6512679899999998518--7888343424-555421343458799999999999982--89735 Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHH--HHCCCHHEEECCCHHHHHCCCCCCHHH Q ss_conf 000013522012478988633221011--100200001112012321436889899 Q gi|255764472|r 333 SDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSPRLGTPGSNMLEQVDENV 386 (469) Q Consensus 333 tdiIvGfPgETeedf~~Tl~~i~~~~~--~~~~vf~yS~r~gT~Aa~m~~qV~~~v 386 (469) +.+|+|+ |||.+|..+++..+++++. +.+.++.|-|.||||-...+ .+++.. T Consensus 212 ~g~i~G~-gEt~ed~i~~l~~Lr~L~~~~~~v~~~~f~P~~gT~l~~~~-~~~~~e 265 (369) T 1r30_A 212 SGGIVGL-GETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADND-DVDAFD 265 (369) T ss_dssp CCEEECS-SCCHHHHHHHHHHHHSSSSCCSEEEEEECCCCTTSTTSSCC-CCCHHH T ss_pred EEEEECC-CCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCC-CCCHHH T ss_conf 8889788-99999999999999866899866555004668999766678-999999 No 5 >3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM radical, activase, glycyl radical, 4Fe- 4S, carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia coli} PDB: 3cb8_A* Probab=98.98 E-value=6.5e-09 Score=84.62 Aligned_cols=176 Identities=14% Similarity=0.164 Sum_probs=109.6 Q ss_pred CEEEEEECCCCCCCCCCCCHHHHH--HHHHHHHHHHHHHHHHHHHH---CCCCEEEEECCCCCEEEECCCCCCCCCCCHH Q ss_conf 257874123324468111001221--37641005889998876310---1331058731454113411344431000216 Q gi|255764472|r 176 VTAFLTIQEGCDKFCTFCVVPYTR--GIEISRSLSQVVDEARKLID---NGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250 (469) Q Consensus 176 ~~a~ikI~~GC~~~CsfC~ip~~R--G~~rSr~~~~Iv~ei~~l~~---~G~kEi~L~g~d~~~Y~g~~~~~~~~~l~~L 250 (469) +..|++ |||++|.||.-|.+. ...+..+++++++++..... .+...|.++| |.-+- ....+.++ T Consensus 22 ~~vf~~---GCN~~C~~C~n~~~~~~~~~~~~~~~e~~~ei~~~~~~~~~~~~~v~~sG-------GEP~l-~~~~l~~l 90 (245) T 3c8f_A 22 FITFFQ---GCLMRCLYCHNRDTWDTHGGKEVTVEDLMKEVVTYRHFMNASGGGVTASG-------GEAIL-QAEFVRDW 90 (245) T ss_dssp EEEEES---CCSCCCTTCSCGGGCCTTCSEEECHHHHHHHHGGGHHHHTSTTCEEEEEE-------SCGGG-GHHHHHHH T ss_pred EEEECC---CCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEECCC-------CCCCC-CHHHHHHH T ss_conf 999878---74788989997134186799188999999999999997525787585355-------56534-69999999 Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCC Q ss_conf 78862044430013544210001000366520221112201332111457899873033344114678999874013443 Q gi|255764472|r 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330 (469) Q Consensus 251 l~~l~~i~~~~riR~~s~~P~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~~~r~~~p~~~ 330 (469) ++.+.+. |+ ++.+.+-......+++++.+... ...+.+++.+.++..-+... +.+.+.+++.++.+++.-..+. T Consensus 91 ~~~~k~~-g~-~~~l~TnG~~~~~~~~~~~l~~~---~d~v~id~~~~~~~~~~~~~-g~~~~~vl~~l~~l~~~g~~v~ 164 (245) T 3c8f_A 91 FRACKKE-GI-HTCLDTNGFVRRYDPVIDELLEV---TDLVMLDLKQMNDEIHQNLV-GVSNHRTLEFAKYLANKNVKVW 164 (245) T ss_dssp HHHHHTT-TC-CEEEEECCCCCCCCHHHHHHHHT---CSEEEEECCCSSHHHHHHHH-SSCSHHHHHHHHHHHHHTCCEE T ss_pred HHHHHHH-CC-CEEEECCCCCCCCHHHHHHHHCC---CCEEEEECCCCCHHHHHHHH-CCCCHHHHHHHHHHHHCCCCEE T ss_conf 9988864-38-47997788655534566665235---75799843546788999873-8650899999999997899899 Q ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHHH-HHHCCCHHEEE Q ss_conf 2000001352201247898863322101-11002000011 Q gi|255764472|r 331 ISSDFIVGFPGETDDDFRATMDLVDKIG-YAQAFSFKYSP 369 (469) Q Consensus 331 i~tdiIvGfPgETeedf~~Tl~~i~~~~-~~~~~vf~yS~ 369 (469) +++.+|-|++. ++|++.+..+|+.++. ...+++.+|.+ T Consensus 165 i~~~~i~g~~d-~~e~i~~i~~~i~~l~~~~~v~l~py~~ 203 (245) T 3c8f_A 165 IRYVVVPGWSD-DDDSAHRLGEFTRDMGNVEKIELLPYHE 203 (245) T ss_dssp EEEEECTTTTC-CHHHHHHHHHHHHHHCCEEEEEEEECCC T ss_pred EEEEEECCCCC-CHHHHHHHHHHHHHCCCCCEEEEECCCC T ss_conf 99999899489-9999999999998579975588844761 No 6 >1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel, ligand binding protein; HET: SAM; 2.20A {Staphylococcus aureus} SCOP: c.1.28.3 PDB: 1tv7_A* 2fb3_A* 2fb2_A* Probab=98.81 E-value=1.4e-07 Score=74.71 Aligned_cols=196 Identities=15% Similarity=0.220 Sum_probs=130.2 Q ss_pred EEEEECCCCCCCCCCCCHHHHHH-------HHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCCCHH Q ss_conf 78741233244681110012213-------76410058899988763101331058731454113411344431000216 Q gi|255764472|r 178 AFLTIQEGCDKFCTFCVVPYTRG-------IEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDL 250 (469) Q Consensus 178 a~ikI~~GC~~~CsfC~ip~~RG-------~~rSr~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y~g~~~~~~~~~l~~L 250 (469) -.|.|..-||.+|.||--....+ +..-.+.+++.+=++.+.+.|+..|.||| |.-+ -...|.++ T Consensus 16 lri~IT~rCNL~C~~C~~~~~~~~~~~~~~~~~~Ls~eei~~ii~~~~~~gv~~i~ltG-------GEPl--lr~d~~~~ 86 (340) T 1tv8_A 16 LRLSVTDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAELGVKKIRITG-------GEPL--MRRDLDVL 86 (340) T ss_dssp EEEECCSCCSCCCTTTSCTTTSSTTCCCCCGGGSCCHHHHHHHHHHHHHTTCCEEEEES-------SCGG--GSTTHHHH T ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECC-------CCHH--CCHHHHHH T ss_conf 79971552178896889640067777767610348999999999999876980999638-------8620--07006999 Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHC-CCCCCCHHHHHHHHHHHHCCCC Q ss_conf 788620444300135442100010003665202211122013321114578998730-3334411467899987401344 Q gi|255764472|r 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMN-RRHTAYEYRQIIDRIRSVRPDI 329 (469) Q Consensus 251 l~~l~~i~~~~riR~~s~~P~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~-R~~~~e~~~~~i~~~r~~~p~~ 329 (469) +..+.+..+...+-+ .+-..++++.++.+++.+ ...+.+++.+.++..-+.+. ++...+...+.++.++++--.+ T Consensus 87 i~~~~~~~~~~~~~~--Tng~ll~~~~~~~L~~~g--l~~v~ISld~~~~e~~~~i~g~~g~~~~~~~~i~~~~~~g~~v 162 (340) T 1tv8_A 87 IAKLNQIDGIEDIGL--TTNGLLLKKHGQKLYDAG--LRRINVSLDAIDDTLFQSINNRNIKATTILEQIDYATSIGLNV 162 (340) T ss_dssp HHHHTTCTTCCEEEE--EECSTTHHHHHHHHHHHT--CCEEEEECCCSSHHHHHHHHSSCCCHHHHHHHHHHHHHTTCEE T ss_pred HHHHHHCCCCCEEEC--CCCCCCCHHHHHHHHHCC--CCEEECCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCE T ss_conf 987521022102421--078653421389999849--9888504677658888776510565000037999999879987 Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEECCCHHHHHCCCCCCHHHHHHH Q ss_conf 3200000135220124789886332210111002000011120123214368898999999 Q gi|255764472|r 330 AISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAER 390 (469) Q Consensus 330 ~i~tdiIvGfPgETeedf~~Tl~~i~~~~~~~~~vf~yS~r~gT~Aa~m~~qV~~~vk~~R 390 (469) .+.+.++ ++...++..+.++|.++...+ +....|.|..+.........++.+..... T Consensus 163 ~in~vv~---~~~N~~~i~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 219 (340) T 1tv8_A 163 KVNVVIQ---KGINDDQIIPMLEYFKDKHIE-IRFIEFMDVGNDNGWDFSKVVTKDEMLTM 219 (340) T ss_dssp EEEEEEC---TTTTGGGHHHHHHHHHHTTCC-EEEEECCCBCSSSSBCCSSCCCHHHHHHH T ss_pred EEEEEEC---CCCCHHHHHHHHHHHHHCCCC-EEEEEEEECCCCCCCCCCCCCCHHHHHHH T ss_conf 9998974---886256689999999847981-99999984367666331256889999999 No 7 >2a5h_A L-lysine 2,3-aminomutase; radical SAM, four-iron-four-sulfur cluster, 4Fe4S, FS4, SAM, S-adenosylmethionine, alpha-beta channel; HET: SAM LYS PLP; 2.10A {Clostridium subterminale} Probab=98.80 E-value=1.3e-07 Score=74.84 Aligned_cols=179 Identities=15% Similarity=0.207 Sum_probs=108.8 Q ss_pred CCEEEEEECCCCCCCCCCCCHHHHHHH-HHHHHHHHHHHHHHHHHH-CCCCEEEEECCCCCEEEECCCCCCCCCCCHHHH Q ss_conf 725787412332446811100122137-641005889998876310-133105873145411341134443100021678 Q gi|255764472|r 175 GVTAFLTIQEGCDKFCTFCVVPYTRGI-EISRSLSQVVDEARKLID-NGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLY 252 (469) Q Consensus 175 ~~~a~ikI~~GC~~~CsfC~ip~~RG~-~rSr~~~~Iv~ei~~l~~-~G~kEi~L~g~d~~~Y~g~~~~~~~~~l~~Ll~ 252 (469) +-++.+.+++.|+.+|+||-=...-|. ....+.+++.+-++.+.+ .|+++|.||| |+-+-.....|.+|++ T Consensus 114 ~~rvll~vT~~Cn~~CrYC~R~~~~~~~~~~l~~~ei~~~i~yi~~~~~I~~V~lTG-------GePL~r~d~~L~~li~ 186 (416) T 2a5h_A 114 PDRVLLLITDMCSMYCRHCTRRRFAGQSDDSMPMERIDKAIDYIRNTPQVRDVLLSG-------GDALLVSDETLEYIIA 186 (416) T ss_dssp SSEEEEEEESCCSSCCTTCTTTTTTTSSSSBCCHHHHHHHHHHHHTCTTCCEEEEEE-------SCTTSSCHHHHHHHHH T ss_pred CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEC-------CCCCCCCHHHHHHHHH T ss_conf 875899845754772879898775686434346899999999998489826999978-------9734378899999999 Q ss_pred HHHCCCCCCCCCCCC----CCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCC Q ss_conf 862044430013544----2100010003665202211122013321114578998730333441146789998740134 Q gi|255764472|r 253 SLSEIKGLVRLRYTT----SHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPD 328 (469) Q Consensus 253 ~l~~i~~~~riR~~s----~~P~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~~~r~~~p~ 328 (469) .+.+++++..+|+++ ..|..++++|.++..+... +++.+-.+. +.--.+...+.++.+++...- T Consensus 187 ~l~~i~~i~~iri~T~~~~~~p~r~~~~L~~~g~~~~n------isldth~~h------~~el~~~v~~~i~~l~~~Gi~ 254 (416) T 2a5h_A 187 KLREIPHVEIVRIGSRTPVVLPQRITPELVNMLKKYHP------VWLNTHFNH------PNEITEESTRACQLLADAGVP 254 (416) T ss_dssp HHHTSTTCCEEEEECSHHHHCGGGCCHHHHHHHGGGCS------EEEEECCCS------GGGCCHHHHHHHHHHHHTTCC T ss_pred HHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCE------EEEEEECCC------CCCCCHHHHHHHHHHHHCCCE T ss_conf 99847998647888067544727779999987742763------899974277------100559999999999976994 Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEECCCH Q ss_conf 432000001352201247898863322101110020000111201 Q gi|255764472|r 329 IAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGT 373 (469) Q Consensus 329 ~~i~tdiIvGfPgETeedf~~Tl~~i~~~~~~~~~vf~yS~r~gT 373 (469) +.+.+=++-|+ .+++++..+.++.+.+.+..-..+|..-+-.|+ T Consensus 255 vk~n~VllkGv-NDd~~~l~~L~~~l~~~gv~pyyi~~~d~~~g~ 298 (416) T 2a5h_A 255 LGNQSVLLRGV-NDCVHVMKELVNKLVKIRVRPYYIYQCDLSLGL 298 (416) T ss_dssp EEEEEECCTTT-TCSHHHHHHHHHHHHHTTEEEEEEECCCCBTTC T ss_pred EEEECEEECCC-CCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCH T ss_conf 87304056774-388899999999998679769999834788743 No 8 >2yx0_A Radical SAM enzyme; predicted tRNA modification enzyme, metal binding protein, structural genomics, NPPSFA; 2.21A {Pyrococcus horikoshii} Probab=98.25 E-value=4.7e-06 Score=63.29 Aligned_cols=172 Identities=14% Similarity=0.117 Sum_probs=99.1 Q ss_pred ECCCCCCCCCCCCHHHH--HH---HHHHHHHHHHHHHHHHHHHC--------------------CCCEEEEECCCCCEEE Q ss_conf 12332446811100122--13---76410058899988763101--------------------3310587314541134 Q gi|255764472|r 182 IQEGCDKFCTFCVVPYT--RG---IEISRSLSQVVDEARKLIDN--------------------GVCEITLLGQNVNAWR 236 (469) Q Consensus 182 I~~GC~~~CsfC~ip~~--RG---~~rSr~~~~Iv~ei~~l~~~--------------------G~kEi~L~g~d~~~Y~ 236 (469) ....||.+|.||--+.. .| +...-+++.|++++-..... +.+.+.++| + T Consensus 77 sl~~CNlrCvfC~r~~~~~~~~~~~~~~d~pe~Ivee~i~~~~~~i~~~~g~~~~~~e~~~Ea~~~~hvais~------~ 150 (342) T 2yx0_A 77 VLAWCTHNCIFCWRPMENFLGTELPQPWDDPAFIVEESIKAQRKLLIGYKGNPKVDKKKFEEAWNPTHAAISL------S 150 (342) T ss_dssp CSSCCSBCCTTCCCSSSSCSCSSCCSSCCCHHHHHHHHHHHHHHHHTTCC--CCSCHHHHHHHTSCCEEEECS------S T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCEEEEEC------C T ss_conf 4152025898889987777776654444798999999999999988764267630256666524876799957------8 Q ss_pred ECCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCC---CCC Q ss_conf 11344431000216788620444300135442100010003665202211122013321114578998730333---441 Q gi|255764472|r 237 GKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH---TAY 313 (469) Q Consensus 237 g~~~~~~~~~l~~Ll~~l~~i~~~~riR~~s~~P~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R~~---~~e 313 (469) |. +.-...|.+|++.+.+. |. .+.+. .|.. +.+++...... .....++.+++.+.+++..+++.|+- ..+ T Consensus 151 GE--Pll~p~l~eli~~~~~~-gi-~~~l~-TNGt-l~~~~~~l~~~-~~~~~~l~vSLDa~~~e~~~ki~r~~~~~~~e 223 (342) T 2yx0_A 151 GE--PMLYPYMGDLVEEFHKR-GF-TTFIV-TNGT-IPERLEEMIKE-DKLPTQLYVSITAPDIETYNSVNIPMIPDGWE 223 (342) T ss_dssp SC--GGGSTTHHHHHHHHHHT-TC-EEEEE-ECSC-CHHHHHHHHHT-TCCCSEEEEEECCSSHHHHHHHHCBSSSCHHH T ss_pred CC--CCCCHHHHHHHHHHHHC-CC-EEEEE-CCCC-CHHHHHHHHHH-HCCCCEEEEECCCCCHHHHHHHHCCCCCCHHH T ss_conf 77--53455599999999863-96-49996-5886-61179999987-47886799835789989999873766767799 Q ss_pred HHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEE Q ss_conf 14678999874013443200000135220124789886332210111002000011 Q gi|255764472|r 314 EYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSP 369 (469) Q Consensus 314 ~~~~~i~~~r~~~p~~~i~tdiIvGfPgETeedf~~Tl~~i~~~~~~~~~vf~yS~ 369 (469) .+++.++.+++.--...++++++-|+ ++++.++-.+|++...++.+.+-.|.. T Consensus 224 rvl~~L~~L~~~g~~~vir~tlv~g~---N~~ei~~~a~li~~~~pdfie~k~y~~ 276 (342) T 2yx0_A 224 RILRFLELMRDLPTRTVVRLTLVKGE---NMHSPEKYAKLILKARPMFVEAKAYMF 276 (342) T ss_dssp HHHHHHHHHTTCSSEEEEEEEECTTT---TCCCHHHHHHHHHHHCCSEEEEEECC- T ss_pred HHHHHHHHHHHCCCCEEEEEEEECCC---CHHHHHHHHHHHHHCCCCEEEEEEEEE T ss_conf 99999999996699889999996898---766699999999865999899960387 No 9 >2z2u_A UPF0026 protein MJ0257; metal binding protein; 2.40A {Methanocaldococcus jannaschii} Probab=97.80 E-value=5.1e-05 Score=55.58 Aligned_cols=167 Identities=13% Similarity=0.113 Sum_probs=97.2 Q ss_pred EECCCCCCCCCCCCHHHH--HHH-------HHHHHHHHHHHHHHH----HHH-----------------CCCCEEEEECC Q ss_conf 412332446811100122--137-------641005889998876----310-----------------13310587314 Q gi|255764472|r 181 TIQEGCDKFCTFCVVPYT--RGI-------EISRSLSQVVDEARK----LID-----------------NGVCEITLLGQ 230 (469) Q Consensus 181 kI~~GC~~~CsfC~ip~~--RG~-------~rSr~~~~Iv~ei~~----l~~-----------------~G~kEi~L~g~ 230 (469) +...+||.+|.||--+.. .|. ..--+++.|++++-. ++. .|.+.+.++ T Consensus 57 Ps~~~CN~rC~fC~r~~~~~~~~~~~~~~~~~~d~pe~Ive~~i~~~~kli~~~~g~~~~v~~e~~~ea~~~~~iais-- 134 (311) T 2z2u_A 57 PSVIWCQQNCIFCWRVLPRDIGIDISQIKEPKWEEPEVVYEKILAMHKRIIMGYAGVLDRVGEKKFKEALEPKHVAIS-- 134 (311) T ss_dssp SCSSCCSCC----------------CCSCCCCCCCHHHHHHHHHHHHHHHHHGGGGGHHHHCHHHHHHHTSCCEEEEC-- T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCEEEEC-- T ss_conf 573002087947769887877777310134454899999999999999997653267754015666652376379862-- Q ss_pred CCCEEEECCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCC Q ss_conf 54113411344431000216788620444300135442100010003665202211122013321114578998730333 Q gi|255764472|r 231 NVNAWRGKGLDGEKCTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRH 310 (469) Q Consensus 231 d~~~Y~g~~~~~~~~~l~~Ll~~l~~i~~~~riR~~s~~P~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R~~ 310 (469) .+|.- .-...|.+|++.+.+.. + .+.+. .+. .+++.+++.+ ...+.+++.+.++...+.+.|+. T Consensus 135 ----~~GEP--~l~p~l~eli~~~~~~g-i-~~~l~-TNG-----~~~d~l~~l~--~~~l~vSlDa~~~e~~~~i~r~~ 198 (311) T 2z2u_A 135 ----LSGEP--TLYPYLDELIKIFHKNG-F-TTFVV-SNG-----ILTDVIEKIE--PTQLYISLDAYDLDSYRRICGGK 198 (311) T ss_dssp ----SSSCG--GGSTTHHHHHHHHHHTT-C-EEEEE-ECS-----CCHHHHHHCC--CSEEEEECCCSSTTTC----CCC T ss_pred ----CCCCC--CHHHHHHHHHHHHHHCC-C-EEEEE-ECC-----CCHHHHHHHC--CCEEEEEECCCCHHHHHHHHCCC T ss_conf ----68873--04789999999998759-7-27754-154-----3447898705--51588630479999999986756 Q ss_pred --CCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEEC Q ss_conf --441146789998740134432000001352201247898863322101110020000111 Q gi|255764472|r 311 --TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPR 370 (469) Q Consensus 311 --~~e~~~~~i~~~r~~~p~~~i~tdiIvGfPgETeedf~~Tl~~i~~~~~~~~~vf~yS~r 370 (469) ..+.+++.++.+++.. ...++++++-|+- +|..+-.+|++.+.++.+-+++|.+. T Consensus 199 ~~~~e~vl~~l~~l~~~~-~~vir~tlv~g~N----ddi~~~a~l~~~~~~~fIEvk~~~~~ 255 (311) T 2z2u_A 199 KEYWESILNTLDILKEKK-RTCIRTTLIRGYN----DDILKFVELYERADVHFIELKSYMHV 255 (311) T ss_dssp HHHHHHHHHHHHHHTTSS-SEEEEEEECTTTT----CCGGGTHHHHHHHTCSEEEEEECC-- T ss_pred CCHHHHHHHHHHHHHHCC-CEEEEEEEECCCC----CCHHHHHHHHHHCCCCEEEEECEEEC T ss_conf 237999999999998669-8799998436776----48999999997539988999640851 No 10 >1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichiisubsp} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A* Probab=94.71 E-value=0.25 Score=27.99 Aligned_cols=15 Identities=27% Similarity=0.490 Sum_probs=10.2 Q ss_pred HCCCEEEEEEECCCC Q ss_conf 579789999842568 Q gi|255764472|r 409 CVGQIIEVLIEKHGK 423 (469) Q Consensus 409 ~iG~~~~Vlve~~~~ 423 (469) ..|++-+|++-..+. T Consensus 592 ~~GrrPkv~la~lG~ 606 (727) T 1req_A 592 AEGRRPRILLAKMGQ 606 (727) T ss_dssp HHSSCCEEEEECBTT T ss_pred HCCCCCEEEEECCCC T ss_conf 659996699981784 No 11 >3can_A Pyruvate-formate lyase-activating enzyme; structural genomics, PSI, MCSG, APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482} Probab=94.28 E-value=0.26 Score=27.90 Aligned_cols=116 Identities=10% Similarity=0.064 Sum_probs=72.4 Q ss_pred CCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHC Q ss_conf 02167886204443001354421000100036652022111220133211145789987303334411467899987401 Q gi|255764472|r 247 FSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 (469) Q Consensus 247 l~~Ll~~l~~i~~~~riR~~s~~P~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~~~r~~~ 326 (469) +.++++.+.+. |+ ++.+.+ +- .+.++.++.+.. .+.++.+++.+.++..-+++.+ .+.+...+.++.+++.. T Consensus 21 l~ei~~~~k~~-g~-~~~l~T-NG-~l~~e~~~~~~~---~~d~~~~sl~~~~~e~~~~i~g-~~~~~v~~~i~~l~~~~ 92 (182) T 3can_A 21 LIDILKRCGQQ-GI-HRAVDT-TL-LARKETVDEVMR---NCELLLIDLKSMDSTVHQTFCD-VPNELILKNIRRVAEAD 92 (182) T ss_dssp HHHHHHHHHHT-TC-CEEEEC-TT-CCCHHHHHHHHH---TCSEEEEECCCSCHHHHHHHHS-SCSHHHHHHHHHHHHTT T ss_pred HHHHHHHHHHC-CC-CEEEEC-CC-CCCHHHHHHHHH---HHHHEECCCCCCCHHHHHHHHC-CCHHHHHHHHHHHHHCC T ss_conf 99999999887-99-199981-77-524899998543---2232541423368999998849-98899998899999719 Q ss_pred CCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHH--HHCCCHHEEECC Q ss_conf 344320000013522012478988633221011--100200001112 Q gi|255764472|r 327 PDIAISSDFIVGFPGETDDDFRATMDLVDKIGY--AQAFSFKYSPRL 371 (469) Q Consensus 327 p~~~i~tdiIvGfPgETeedf~~Tl~~i~~~~~--~~~~vf~yS~r~ 371 (469) ..+.+++.+|.|+ ..+++++.+..+|+.++.. ..+++.+|.+.. T Consensus 93 ~~v~~~~~vi~~~-~~~~~~i~~l~~~i~~~~~~~~~i~~~~~~~~~ 138 (182) T 3can_A 93 FPYYIRIPLIEGV-NADEKNIKLSAEFLASLPRHPEIINLLPYHDIG 138 (182) T ss_dssp CCEEEEEEECBTT-TCSHHHHHHHHHHHHHSSSCCSEEEEEECCC-- T ss_pred CCEEEEEEEECCC-CCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCC T ss_conf 8505789887886-599999999999998569981389987676455 No 12 >1yvc_A MRR5; structure, autostructure, autoassign, northeast structural genomics, autoqf, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: b.40.4.12 Probab=93.88 E-value=0.2 Score=28.79 Aligned_cols=56 Identities=36% Similarity=0.463 Sum_probs=44.2 Q ss_pred CCCEEEEEEECCCCCCCEEEEECCCCCEEEECCCCCCCCCEEEEEEEEEECCEEEEEEEC Q ss_conf 797899998425680868999987862889738876768889999998308738999949 Q gi|255764472|r 410 VGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELVV 469 (469) Q Consensus 410 iG~~~~Vlve~~~~~~~~~~G~t~~~~~V~~~~~~~~~G~~v~V~I~~~~~~~L~G~vi~ 469 (469) .|+++++-+++.+. .|.-+++.+ ..++|. ....+|+.+.++|+.....+.+|++|| T Consensus 15 ~g~~~~v~I~~l~~-~G~Gvar~~--g~~vfV-~~alpGE~V~v~Itk~kk~~a~a~~v~ 70 (70) T 1yvc_A 15 AGKEYEVTIEDMGK-GGDGIARID--GFVVFV-PNAEKGSVINVKVTAVKEKFAFAERVL 70 (70) T ss_dssp TTCEEEEECCEECT-TSCEEEEET--TEEEEE-TTCCTTCEEEEEEEEECSSCEEEEECC T ss_pred CCCEEEEEEEECCC-CCCEEEEEC--CEEEEE-CCCCCCCEEEEEEEEECCCCEEEEECC T ss_conf 99999999998678-986999989--999992-899899999999999518839999949 No 13 >2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A Probab=93.53 E-value=0.42 Score=26.34 Aligned_cols=14 Identities=29% Similarity=0.489 Sum_probs=10.5 Q ss_pred CCCEEEEEEECCCC Q ss_conf 79789999842568 Q gi|255764472|r 410 VGQIIEVLIEKHGK 423 (469) Q Consensus 410 iG~~~~Vlve~~~~ 423 (469) .|++-+|++-+.+. T Consensus 601 ~GrrPrillakmG~ 614 (762) T 2xij_A 601 EGRRPRLLVAKMGQ 614 (762) T ss_dssp HSSCCEEEEECCSS T ss_pred HCCCCEEEEECCCC T ss_conf 29997599965787 No 14 >2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.80A {Aeropyrum pernix K1} Probab=91.62 E-value=0.72 Score=24.60 Aligned_cols=96 Identities=17% Similarity=0.245 Sum_probs=60.8 Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHCCCEECCC--------------CCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 799995798568878999999999879868776--------------010889999278325079999999999999876 Q gi|255764472|r 26 RFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNS--------------MDDADLIVLNTCHIREKAAEKVYSFLGRIRNLK 91 (469) Q Consensus 26 kv~i~TlGC~~N~~Dse~i~~~L~~~G~~~~~~--------------~~~ADviiINTCsV~~~ae~k~~~~i~~~~~~~ 91 (469) |+-+-|.+.-.-..-...+...|...||++++- .++||++.+- ++.+. +...+...+..+++. T Consensus 20 rvvia~~~~D~HdiG~~~va~~l~~~G~eV~~LG~~~p~e~~v~~a~~~~~d~v~lS-~~~~~-~~~~~~~~i~~L~~~- 96 (161) T 2yxb_A 20 KVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQTPEQVAMAAVQEDVDVIGVS-ILNGA-HLHLMKRLMAKLREL- 96 (161) T ss_dssp EEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBCCHHHHHHHHHHTTCSEEEEE-ESSSC-HHHHHHHHHHHHHHT- T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEE-CCCCC-CHHHHHHHHHHHHHC- T ss_conf 799980498624788999999999789889978977899999999986699899985-57664-489999999999975- Q ss_pred HHHHHCCCCCEEEEECCCCCCCHHHHHHHHCCCCCCCCCH Q ss_conf 7664218981899964730108788987410011001100 Q gi|255764472|r 92 NSRIKEGGDLLVVVAGCVAQAEGEEILRRSPIVNVVVGPQ 131 (469) Q Consensus 92 ~~~~k~~p~~~IvVtGC~aq~~~e~l~~~~p~vd~vig~~ 131 (469) ..++.+|+++|-.++.+.+.+.+ . ++|.+++++ T Consensus 97 -----g~~~i~i~vGG~~~~~d~~~l~~-~-Gvd~vF~pg 129 (161) T 2yxb_A 97 -----GADDIPVVLGGTIPIPDLEPLRS-L-GIREIFLPG 129 (161) T ss_dssp -----TCTTSCEEEEECCCHHHHHHHHH-T-TCCEEECTT T ss_pred -----CCCCCEEEEECCCCHHHHHHHHH-C-CCCEEECCC T ss_conf -----99998799966879888999997-7-988884998 No 15 >1yez_A MM1357; MAR30, structure, autostructure, northeast structural genomics, PSI, protein structure initiative; NMR {Methanosarcina mazei GO1} SCOP: b.40.4.12 Probab=90.64 E-value=0.72 Score=24.60 Aligned_cols=55 Identities=18% Similarity=0.388 Sum_probs=42.6 Q ss_pred CCCEEEEEEECCCCCCCEEEEECCCCCEEEECCCCCCCCCEEEEEEEEEECCEEEEEEE Q ss_conf 79789999842568086899998786288973887676888999999830873899994 Q gi|255764472|r 410 VGQIIEVLIEKHGKEKGKLVGRSPWLQSVVLNSKNHNIGDIIKVRITDVKISTLYGELV 468 (469) Q Consensus 410 iG~~~~Vlve~~~~~~~~~~G~t~~~~~V~~~~~~~~~G~~v~V~I~~~~~~~L~G~vi 468 (469) .|+.+++-+++.+ ..|.-+|+.+ ..++|. ....+|+.+.++|+.....+.+|+++ T Consensus 13 ~g~~~~l~I~~l~-~~G~Gv~~~~--g~~vfV-~~alpGe~v~v~i~k~kk~~~~a~vi 67 (68) T 1yez_A 13 EGEVYDVTIQDIA-RQGDGIARIE--GFVIFV-PGTKVGDEVRIKVERVLPKFAFASVV 67 (68) T ss_dssp TTEEEEEECCEEE-TTTEEEEEET--TEEEEE-ESCCTTCEEEEEEEEECSSCEEEEEC T ss_pred CCCEEEEEEEECC-CCCCEEEEEC--CEEEEE-CCCCCCCEEEEEEEEECCCEEEEEEE T ss_conf 9999999999957-8986999989--999992-89889989999999970987999993 No 16 >3neh_A Renal dipeptidase family protein; structural genomics, nysgrc, dipeptide L-Leu-D-Ala, PSI-2, P structure initiative; HET: L3A; 1.64A {Listeria monocytogenes} PDB: 3lu2_A Probab=82.95 E-value=2.3 Score=20.89 Aligned_cols=67 Identities=28% Similarity=0.339 Sum_probs=34.1 Q ss_pred CCCCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHC--CCCCCCEEEECCCC Q ss_conf 4421000100036652022111220133211145789987303334411467899987401--34432000001352 Q gi|255764472|r 266 TTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR--PDIAISSDFIVGFP 340 (469) Q Consensus 266 ~s~~P~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~~~r~~~--p~~~i~tdiIvGfP 340 (469) ...+|..++|+.|+++++.+-+.- + ..-+..|..- ...+.+++.+-++.+.+.. ..+.|++|| -|+| T Consensus 200 l~~h~RNl~De~i~aia~~GGviG-----~-~~~~~fl~~~-~~~~~~d~~~Hi~y~~~l~G~dhVgiGsDf-dG~~ 268 (318) T 3neh_A 200 ICSHPRNLDDEQIKAMIEHDAMIH-----V-VFYPLFTTNN-GVADTEDVIRHIDHICELGGLKNIGFGSDF-DGIP 268 (318) T ss_dssp TSCCTTSBCHHHHHHHHHTTCEEE-----E-CCCHHHHCTT-SCCBHHHHHHHHHHHHHTTCGGGEEECCCB-TSCS T ss_pred CCCCCCCCCHHHHHHHHHCCCEEE-----E-ECCHHHCCCC-CCCCHHHHHHHHHHHHHHCCCCEEEECCCC-CCCC T ss_conf 178889997899999998398899-----9-8054431898-654155689999999997298828988556-8999 No 17 >1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM- barrel, rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A* Probab=80.61 E-value=2.7 Score=20.31 Aligned_cols=99 Identities=15% Similarity=0.163 Sum_probs=54.4 Q ss_pred EEEEEEEC-CCCCCHHHHHHHHHHHHHCCCEECCC----C----------CCCCEEEEECCCCCHHHHHHHHHHHHHHHH Q ss_conf 07999957-98568878999999999879868776----0----------108899992783250799999999999998 Q gi|255764472|r 25 QRFFVKSY-GCQMNVYDSLRMEDMFFSQGYERVNS----M----------DDADLIVLNTCHIREKAAEKVYSFLGRIRN 89 (469) Q Consensus 25 kkv~i~Tl-GC~~N~~Dse~i~~~L~~~G~~~~~~----~----------~~ADviiINTCsV~~~ae~k~~~~i~~~~~ 89 (469) +|+-+-|. |..+... ...++..|...||+.+.- | +.+|++.+ |++..... ..+...+..+++ T Consensus 4 ~kVvi~~~~~D~H~lG-~~~va~~l~~~G~~V~~LG~~~p~e~iv~~~~~~~~d~V~i-S~~~~~~~-~~~~~~i~~L~~ 80 (137) T 1ccw_A 4 KTIVLGVIGSDCHAVG-NKILDHAFTNAGFNVVNIGVLSPQELFIKAAIETKADAILV-SSLYGQGE-IDCKGLRQKCDE 80 (137) T ss_dssp CEEEEEEETTCCCCHH-HHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHHTCSEEEE-EECSSTHH-HHHTTHHHHHHH T ss_pred CEEEEEECCCCHHHHH-HHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHCCCEEEE-EECCCCCH-HHHHHHHHHHHH T ss_conf 8799994698745899-99999999987987997786669999999999839987887-61134455-779999999997 Q ss_pred HHHHHHHCCCCCEEEEECCCCCCCH--HHHHHHH--CCCCCCCCCHH Q ss_conf 7676642189818999647301087--8898741--00110011001 Q gi|255764472|r 90 LKNSRIKEGGDLLVVVAGCVAQAEG--EEILRRS--PIVNVVVGPQT 132 (469) Q Consensus 90 ~~~~~~k~~p~~~IvVtGC~aq~~~--e~l~~~~--p~vd~vig~~~ 132 (469) +...+.+|+++|-.+.... .++..++ -++|.+++++. T Consensus 81 ------~~~~~v~iivGG~~~~~~~~~~~~~~~l~~~G~~~vf~~gt 121 (137) T 1ccw_A 81 ------AGLEGILLYVGGNIVVGKQHWPDVEKRFKDMGYDRVYAPGT 121 (137) T ss_dssp ------TTCTTCEEEEEESCSSSSCCHHHHHHHHHHTTCSEECCTTC T ss_pred ------CCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCEEECCCC T ss_conf ------49999979997887887444188999999759888979988 No 18 >3ivs_A Homocitrate synthase, mitochondrial; TIM barrel, metalloprotein, transferase, claisen condensation, amino-acid biosynthesis; 2.24A {Schizosaccharomyces pombe} PDB: 3ivt_A* 3ivu_A* 3mi3_A* Probab=72.61 E-value=4.3 Score=18.78 Aligned_cols=27 Identities=4% Similarity=0.099 Sum_probs=21.2 Q ss_pred ECCCCCCHHHHHHHHHHHHHCCCEECC Q ss_conf 579856887899999999987986877 Q gi|255764472|r 31 SYGCQMNVYDSLRMEDMFFSQGYERVN 57 (469) Q Consensus 31 TlGC~~N~~Dse~i~~~L~~~G~~~~~ 57 (469) +.|...+.-|--.|...|.+.|....+ T Consensus 53 ~~g~~fs~e~K~~i~~~L~~~GV~~IE 79 (423) T 3ivs_A 53 FANAFFDTEKKIQIAKALDNFGVDYIE 79 (423) T ss_dssp STTCCCCHHHHHHHHHHHHHHTCSEEE T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCEEE T ss_conf 999998999999999999981979899 No 19 >3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri} Probab=69.47 E-value=5 Score=18.29 Aligned_cols=74 Identities=8% Similarity=0.091 Sum_probs=31.1 Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCC Q ss_conf 78862044430013544210001000366520221112201332111457899873033344114678999874013443 Q gi|255764472|r 251 LYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIA 330 (469) Q Consensus 251 l~~l~~i~~~~riR~~s~~P~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~~~r~~~p~~~ 330 (469) +..+.+..|+.-+-++.--| .+++++...+.+ ...+-++.=+.-+.-+ ....+.++.+|+. +.. T Consensus 112 va~~l~~~G~~V~~LG~~~p---~e~~~~~~~~~~--~d~v~ls~S~~~~~~~---------~~~~~~i~~lr~~--~~~ 175 (215) T 3ezx_A 112 VTTMLGANGFQIVDLGVDVL---NENVVEEAAKHK--GEKVLLVGSALMTTSM---------LGQKDLMDRLNEE--KLR 175 (215) T ss_dssp HHHHHHHTSCEEEECCSSCC---HHHHHHHHHHTT--TSCEEEEEECSSHHHH---------THHHHHHHHHHHT--TCG T ss_pred HHHHHHHCCCEEEECCCCCC---HHHHHHHHHHCC--CCEEEEEEECCCCCCH---------HHHHHHHHHHHHC--CCC T ss_conf 99999977996998889999---999999999739--9814899856654336---------9999999999980--888 Q ss_pred CCEEEECCCC Q ss_conf 2000001352 Q gi|255764472|r 331 ISSDFIVGFP 340 (469) Q Consensus 331 i~tdiIvGfP 340 (469) -..-+|+|=+ T Consensus 176 ~~v~v~vGGa 185 (215) T 3ezx_A 176 DSVKCMFGGA 185 (215) T ss_dssp GGSEEEEESS T ss_pred CCCEEEEECC T ss_conf 9995998890 No 20 >3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A* Probab=67.81 E-value=5.4 Score=18.06 Aligned_cols=47 Identities=19% Similarity=0.163 Sum_probs=25.5 Q ss_pred HHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEECCCHHHH Q ss_conf 46789998740134432000001352201247898863322101110020000111201232 Q gi|255764472|r 315 YRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGS 376 (469) Q Consensus 315 ~~~~i~~~r~~~p~~~i~tdiIvGfPgETeedf~~Tl~~i~~~~~~~~~vf~yS~r~gT~Aa 376 (469) ..++++.+++. |+.=..-+|||=| +.+.+|+.+..++.++ . |||.+. T Consensus 677 ~p~Lie~L~~~--G~RDkIivV~GGP-------rid~e~a~elGvdAgF----G--pGT~~~ 723 (763) T 3kp1_A 677 MKRIHELAVEK--GIRDKIMIGCGGT-------QVTPEVAVKQGVDAGF----G--RGSKGI 723 (763) T ss_dssp HHHHHHHHHHT--TCTTTSEEEEECT-------TCCHHHHHTTTCSEEE----C--TTCCHH T ss_pred HHHHHHHHHHC--CCCCCEEEEECCC-------CCCHHHHHHCCCCCCC----C--CCCCHH T ss_conf 99999999963--8888759996798-------7787999974925000----8--999878 No 21 >2zvr_A Uncharacterized protein TM_0416; hyperthermophIle, ketohexose 3- epimerase, D-tagatose 3-epimerase, isomerase; 2.20A {Thermotoga maritima} Probab=64.69 E-value=6.2 Score=17.63 Aligned_cols=28 Identities=32% Similarity=0.513 Sum_probs=18.7 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCH Q ss_conf 3522012478988633221011100200 Q gi|255764472|r 338 GFPGETDDDFRATMDLVDKIGYAQAFSF 365 (469) Q Consensus 338 GfPgETeedf~~Tl~~i~~~~~~~~~vf 365 (469) +.||+-+-|+.+.++.+++..|+..-.. T Consensus 235 ~~pG~G~id~~~il~~L~~~gy~G~~~~ 262 (290) T 2zvr_A 235 WAPGCGHFDFRSVFNTLKEIGYNRYVSV 262 (290) T ss_dssp SSTTSSCCCHHHHHHHHHHTTCCSEEEE T ss_pred CCCCCCCCCHHHHHHHHHHHCCCEEEEE T ss_conf 9999865099999999998499817999 No 22 >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* Probab=64.27 E-value=6.3 Score=17.58 Aligned_cols=14 Identities=7% Similarity=0.444 Sum_probs=6.5 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 05889998876310 Q gi|255764472|r 206 SLSQVVDEARKLID 219 (469) Q Consensus 206 ~~~~Iv~ei~~l~~ 219 (469) .+.+++..++.+.. T Consensus 163 ~i~~~l~~l~~~l~ 176 (425) T 2jjq_A 163 TSREAIERLKEFIE 176 (425) T ss_dssp HHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHH T ss_conf 46544444445566 No 23 >2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti MAFF303099} SCOP: c.1.12.9 Probab=62.43 E-value=6.7 Score=17.35 Aligned_cols=39 Identities=26% Similarity=0.363 Sum_probs=25.2 Q ss_pred CHHHHHHHHHHHHCCCCCCCEEEEC-CCCCCHHHHHHHHHHHHH Q ss_conf 1146789998740134432000001-352201247898863322 Q gi|255764472|r 313 YEYRQIIDRIRSVRPDIAISSDFIV-GFPGETDDDFRATMDLVD 355 (469) Q Consensus 313 e~~~~~i~~~r~~~p~~~i~tdiIv-GfPgETeedf~~Tl~~i~ 355 (469) +.+.+.++..++..|++. +++ |=|=.|.+|.+.-++-.. T Consensus 212 ~~i~~i~~a~~~vnp~ii----vLc~GGpI~tp~D~~~~l~~~~ 251 (286) T 2p10_A 212 SLINECIEAARTIRDDII----ILSHGGPIANPEDARFILDSCQ 251 (286) T ss_dssp HHHHHHHHHHHHHCSCCE----EEEESTTCCSHHHHHHHHHHCT T ss_pred HHHHHHHHHHHHHCCCCE----EEEECCCCCCHHHHHHHHHCCC T ss_conf 999999999997499958----9970699899899999997189 No 24 >2rag_A Dipeptidase; aminohydrolase, structural genomics, NYSGXRC, target 9257A, PSI-2, protein structure initiative; 2.00A {Caulobacter crescentus CB15} Probab=57.08 E-value=8.2 Score=16.71 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=17.0 Q ss_pred CCCCCCCCCCCCHHHHHHCCCCCC Q ss_conf 354421000100036652022111 Q gi|255764472|r 264 RYTTSHPRDMSDCLIKAHGDLDVL 287 (469) Q Consensus 264 R~~s~~P~~~~~~li~~~~~~~~i 287 (469) |-...||..++|+.|+++++.+-+ T Consensus 254 ral~~h~RNlsDeqlraIa~~GGV 277 (417) T 2rag_A 254 KAVYDHPRNLDDARLKKIADAGGA 277 (417) T ss_dssp TTTSCCTTEECHHHHHHHHHTTCE T ss_pred HCCCCCCCCCCHHHHHHHHHCCCE T ss_conf 015798888999999999985997 No 25 >1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol- phosphate, lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A Probab=56.69 E-value=8.1 Score=16.77 Aligned_cols=38 Identities=13% Similarity=0.251 Sum_probs=26.7 Q ss_pred CCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHH Q ss_conf 4411467899987401344320000013522012478988633 Q gi|255764472|r 311 TAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353 (469) Q Consensus 311 ~~e~~~~~i~~~r~~~p~~~i~tdiIvGfPgETeedf~~Tl~~ 353 (469) ...+..+.++++|+.. ..-+.|||==-|.|+.++..++ T Consensus 185 ~~~~~~~~i~~ir~~t-----~~Pi~vGFGI~~~e~v~~~~~~ 222 (262) T 1rd5_A 185 VNPRVESLIQEVKKVT-----NKPVAVGFGISKPEHVKQIAQW 222 (262) T ss_dssp BCTHHHHHHHHHHHHC-----SSCEEEESCCCSHHHHHHHHHT T ss_pred CCCHHHHHHHHHHHCC-----CCCEEEEECCCCHHHHHHHHHC T ss_conf 2102788999875136-----8877999278999999999854 No 26 >3ly0_A Dipeptidase AC. metallo peptidase. merops family M19; structural genomics, nysgrc, target 9523C, phosphinate inhibitor, PSI-2; HET: LY0; 1.40A {Rhodobacter sphaeroides} PDB: 3fdg_A Probab=54.35 E-value=9 Score=16.40 Aligned_cols=66 Identities=14% Similarity=0.164 Sum_probs=37.0 Q ss_pred CCCCCCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCC---CCCCCHHHHHHHHHHHHC--CCCCCCEEE Q ss_conf 354421000100036652022111220133211145789987303---334411467899987401--344320000 Q gi|255764472|r 264 RYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNR---RHTAYEYRQIIDRIRSVR--PDIAISSDF 335 (469) Q Consensus 264 R~~s~~P~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R---~~~~e~~~~~i~~~r~~~--p~~~i~tdi 335 (469) |-..-+|..++|+.+.++++.+.+. ++ +.-+.-|+.=++ ..+.+++.+-++.+.+.. ..+.|++|| T Consensus 237 ral~~h~RNl~D~~i~aia~~gGvI-----Gi-~~~~~fl~~~~~~~~~~~~~~~~~Hi~~~~~l~G~dhVgiGsDf 307 (364) T 3ly0_A 237 HAVTPSTRNLTDRQLAMIRESRGMV-----GL-NFATSFLREDGRRSAEMGWEPVLRHLDHLIDRLGEDHVGMGSDF 307 (364) T ss_dssp TTTSCCTTSBCHHHHHHHHHTTCEE-----EE-CCCHHHHSTTCCCCSCCCSHHHHHHHHHHHHHHCTTSEEECCCB T ss_pred HHCCCCCCCCCHHHHHHHHHCCCEE-----EE-ECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCC T ss_conf 6308887879889999999739989-----98-34626036898676557999999999999997098818984368 No 27 >1nqk_A Alkanesulfonate monooxygenase; structural genomics, beta barrel, PSI, protein structure initiative, midwest center for structural genomics; 2.20A {Escherichia coli} SCOP: c.1.16.4 PDB: 1m41_A Probab=54.13 E-value=8.1 Score=16.74 Aligned_cols=58 Identities=12% Similarity=0.108 Sum_probs=25.8 Q ss_pred CCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEE--ECCCHHHH Q ss_conf 34411467899987401344320000013522012478988633221011100200001--11201232 Q gi|255764472|r 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKIGYAQAFSFKYS--PRLGTPGS 376 (469) Q Consensus 310 ~~~e~~~~~i~~~r~~~p~~~i~tdiIvGfPgETeedf~~Tl~~i~~~~~~~~~vf~yS--~r~gT~Aa 376 (469) .|.+++.+.+..+.+ +.+..=++.|+|-+ ++.-+|.+++-+--=-..+.. ++|-||.. T Consensus 307 Gtpe~V~e~L~~~~d----~Gvd~~~L~~~~~~-----~~~~~~~~~VlP~lr~~~~~~~~~~~~~~~~ 366 (381) T 1nqk_A 307 GDGPTVAARINEYAA----LGIDSFVLSGYPHL-----EEAYRVGELLFPLLDVAIPEIPQPQPLNPQG 366 (381) T ss_dssp EEHHHHHHHHHHHHT----TTCCEEEEECSSHH-----HHHHHHHHHTGGGSCBCCCCCCCCCCC---- T ss_pred ECHHHHHHHHHHHHH----CCCCEEEEECCCCH-----HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC T ss_conf 889999999999997----19998999289998-----9999999733401024030557888999876 No 28 >1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A Probab=53.79 E-value=9.2 Score=16.33 Aligned_cols=25 Identities=24% Similarity=0.573 Sum_probs=20.7 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHC Q ss_conf 3522012478988633221011100 Q gi|255764472|r 338 GFPGETDDDFRATMDLVDKIGYAQA 362 (469) Q Consensus 338 GfPgETeedf~~Tl~~i~~~~~~~~ 362 (469) ++|||-+=||.+.++.+++..|+-. T Consensus 218 ~~~G~G~id~~~i~~~L~~~gy~G~ 242 (278) T 1i60_A 218 VWPGQGAIDLDAHLSALKEIGFSDV 242 (278) T ss_dssp ESTTSSSSCHHHHHHHHHHTTCCSE T ss_pred CCCCCCCCCHHHHHHHHHHHCCCEE T ss_conf 5898954389999999998499717 No 29 >3npg_A Uncharacterized DUF364 family protein; protein with unknown function from DUF364 family, structural genomics; 2.70A {Pyrococcus horikoshii} Probab=52.76 E-value=9.6 Score=16.22 Aligned_cols=38 Identities=11% Similarity=0.031 Sum_probs=16.3 Q ss_pred EEEEECCCCCCCCCCCCHHH-----HHHHHHHHHHHHHHHHHH Q ss_conf 78741233244681110012-----213764100588999887 Q gi|255764472|r 178 AFLTIQEGCDKFCTFCVVPY-----TRGIEISRSLSQVVDEAR 215 (469) Q Consensus 178 a~ikI~~GC~~~CsfC~ip~-----~RG~~rSr~~~~Iv~ei~ 215 (469) .|+.++.||-..|..+-++. ..|.+.-.|..++++.+. T Consensus 33 t~Vl~e~~~g~~~G~A~T~~~~~~~~~g~l~g~~~~el~~~~~ 75 (249) T 3npg_A 33 TWVLVEGIEGRALGVAMTLPEEVQRYTNSIEEPSLLEFIDKAD 75 (249) T ss_dssp EEEEEECSSCEEEEEEECCGGGCSCCCCCCSSCCHHHHHHGGG T ss_pred EEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHCC T ss_conf 8999966988768997537665567777767988999997511 No 30 >2qw5_A Xylose isomerase-like TIM barrel; putative sugar phosphate isomerase/epimerase; 1.78A {Anabaena variabilis atcc 29413} Probab=51.80 E-value=9.9 Score=16.11 Aligned_cols=38 Identities=11% Similarity=0.038 Sum_probs=25.2 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHH-HCCCHHEEECCCHHHH Q ss_conf 35220124789886332210111-0020000111201232 Q gi|255764472|r 338 GFPGETDDDFRATMDLVDKIGYA-QAFSFKYSPRLGTPGS 376 (469) Q Consensus 338 GfPgETeedf~~Tl~~i~~~~~~-~~~vf~yS~r~gT~Aa 376 (469) |.||+-+-||...++.+++. ++ ++.+=.|++.|+.+++ T Consensus 254 ~~pG~G~id~~~i~~~L~~g-Y~G~isiE~f~~~~~~~~~ 292 (335) T 2qw5_A 254 GALHTSWLPWKSFLTPIVKV-YDGPIAVEIFNAIPAFTNS 292 (335) T ss_dssp SCSSSSCCCHHHHHHHHHHH-CCSCEEECCCCSCHHHHTT T ss_pred CCCCCCCCCHHHHHHHHHHH-CCCCEEEEECCCCCCHHHH T ss_conf 89979821899999999987-9950899878888316678 No 31 >2gjx_A Beta-hexosaminidase alpha chain; beta-hexosaminidase A, glycosidase, TAY-sachs disease, GM2 ganglisode, TIM barrel, hydrolase; HET: NAG BMA NDG; 2.80A {Homo sapiens} SCOP: c.1.8.6 d.92.2.1 PDB: 2gk1_A* Probab=49.67 E-value=9.2 Score=16.33 Aligned_cols=17 Identities=24% Similarity=0.245 Sum_probs=10.2 Q ss_pred CCCCCHHHHHHHHHHHH Q ss_conf 33441146789998740 Q gi|255764472|r 309 RHTAYEYRQIIDRIRSV 325 (469) Q Consensus 309 ~~~~e~~~~~i~~~r~~ 325 (469) .||.++++++++..+++ T Consensus 211 ~YT~~di~eiv~yA~~r 227 (507) T 2gjx_A 211 IYTAQDVKEVIEYARLR 227 (507) T ss_dssp CBCHHHHHHHHHHHHHT T ss_pred CCCHHHHHHHHHHHHHH T ss_conf 74999999999999981 No 32 >3fst_A 5,10-methylenetetrahydrofolate reductase; TIM barrel, flavin, amino-acid biosynthesis, FAD, flavoprotein, methionine biosynthesis, NAD; HET: FAD MRY; 1.65A {Escherichia coli k-12} PDB: 3fsu_A* 1zp3_A* 1zpt_A* 1zrq_A* 1zp4_A* 2fmn_A* 2fmo_A* 1b5t_A* Probab=48.25 E-value=11 Score=15.84 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=12.1 Q ss_pred HHHHHHHHHHHHHHCCCCEEEEEC Q ss_conf 058899988763101331058731 Q gi|255764472|r 206 SLSQVVDEARKLIDNGVCEITLLG 229 (469) Q Consensus 206 ~~~~Iv~ei~~l~~~G~kEi~L~g 229 (469) +.+++-+.+..+.+.|++.|..++ T Consensus 95 ~~~~l~~~L~~~~~~GI~niLaLr 118 (304) T 3fst_A 95 TPDELRTIARDYWNNGIRHIVALR 118 (304) T ss_dssp CHHHHHHHHHHHHHTTCCEEEEEC T ss_pred CHHHHHHHHHHHHHCCCCEEEEEC T ss_conf 999999999999983977076616 No 33 >3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A* Probab=47.81 E-value=10 Score=15.94 Aligned_cols=113 Identities=18% Similarity=0.172 Sum_probs=49.3 Q ss_pred HHHHHHH----HHHHHHCCCCEEEEECCC---------------CCEEEECCCCCCCCCCCHHHHHHHCCCC-C--CCCC Q ss_conf 5889998----876310133105873145---------------4113411344431000216788620444-3--0013 Q gi|255764472|r 207 LSQVVDE----ARKLIDNGVCEITLLGQN---------------VNAWRGKGLDGEKCTFSDLLYSLSEIKG-L--VRLR 264 (469) Q Consensus 207 ~~~Iv~e----i~~l~~~G~kEi~L~g~d---------------~~~Y~g~~~~~~~~~l~~Ll~~l~~i~~-~--~riR 264 (469) +++|+++ ++...+.|+.=|-|.+-+ +..| |..+.+.-.-+.++++.+.+.-+ . ..+| T Consensus 153 I~~ii~~f~~AA~~a~~AGfDgVEiH~ahGyLl~qFlSp~~N~RtDeY-GGs~enR~Rf~~Eii~air~~~g~~~~i~~R 231 (363) T 3l5l_A 153 IARVKQDFVDAARRARDAGFEWIELHFAHGYLGQSFFSEHSNKRTDAY-GGSFDNRSRFLLETLAAVREVWPENLPLTAR 231 (363) T ss_dssp HHHHHHHHHHHHHHHHHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTT-SSSHHHHHHHHHHHHHHHHTTSCTTSCEEEE T ss_pred HHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHCCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHHHHHCCCCCCEEEE T ss_conf 999999999999999962967532134543135527677789986878-8884560678999999999862667740210 Q ss_pred CCCCC---CCCC-CCHHHHH---HCCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHC Q ss_conf 54421---0001-0003665---2022111220133211145789987303334411467899987401 Q gi|255764472|r 265 YTTSH---PRDM-SDCLIKA---HGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 (469) Q Consensus 265 ~~s~~---P~~~-~~~li~~---~~~~~~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~~~r~~~ 326 (469) ++..+ +... .++.+++ +.+.+ +.++|++.-... ..++..+....+..+.+.+|+.. T Consensus 232 ~~~~~~~~~~g~~~~e~~~~~~~l~~~g--vD~i~vs~G~~~----~~~~~~~~~~~~~~~a~~ik~~~ 294 (363) T 3l5l_A 232 FGVLEYDGRDEQTLEESIELARRFKAGG--LDLLSVSVGFTI----PDTNIPWGPAFMGPIAERVRREA 294 (363) T ss_dssp EEEECSSSCHHHHHHHHHHHHHHHHHTT--CCEEEEEECCCS----SCCCCCCCTTTTHHHHHHHHHHH T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHC--CCEEEEECCCCC----CCCCCCCCCCCHHHHHHHHHHHC T ss_conf 5732357889864889999999998618--767998547322----67666667420057999999865 No 34 >3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase, phosphate-binding motif, structural genomics; 2.04A {Escherichia coli} PDB: 3cqi_A 3cqh_A 3cqk_A Probab=47.73 E-value=11 Score=15.67 Aligned_cols=22 Identities=27% Similarity=0.447 Sum_probs=15.8 Q ss_pred CCCHHHHHHHHHHHHHHHHHHH Q ss_conf 2201247898863322101110 Q gi|255764472|r 340 PGETDDDFRATMDLVDKIGYAQ 361 (469) Q Consensus 340 PgETeedf~~Tl~~i~~~~~~~ 361 (469) ||+-+-||...++.+++..++- T Consensus 236 ~G~G~id~~~~~~~L~~~gy~G 257 (295) T 3cqj_A 236 FGEGVVDFERCFETLKQSGYCG 257 (295) T ss_dssp TTSSSCCHHHHHHHHHHTTCCS T ss_pred CCCCCCCHHHHHHHHHHHCCCE T ss_conf 9984619999999999969971 No 35 >1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'- deoxyadenosine, radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1 Probab=47.12 E-value=12 Score=15.61 Aligned_cols=81 Identities=14% Similarity=0.264 Sum_probs=39.1 Q ss_pred CCCCCHHHHHHCCCCCCCCCEEEEEECC-CHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHH Q ss_conf 0010003665202211122013321114-578998730333441146789998740134432000001352201247898 Q gi|255764472|r 271 RDMSDCLIKAHGDLDVLMPYLHLPVQSG-SDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349 (469) Q Consensus 271 ~~~~~~li~~~~~~~~i~~~lhlpiQSg-s~~vLk~M~R~~~~e~~~~~i~~~r~~~p~~~i~tdiIvGfPgETeedf~~ 349 (469) ..-.+++++...+.+ ..-+-++.-.+ +.-.+. ...++++.+++. ++.=..-+|||=|--|+ T Consensus 166 ~vp~ee~v~~a~e~~--aD~VgvS~llt~~~~h~~---------~~~~li~~l~e~--gl~~~v~vivGG~~~~~----- 227 (262) T 1xrs_B 166 QVANEDFIKKAVELE--ADVLLVSQTVTQKNVHIQ---------NMTHLIELLEAE--GLRDRFVLLCGGPRINN----- 227 (262) T ss_dssp SBCHHHHHHHHHHTT--CSEEEEECCCCTTSHHHH---------HHHHHHHHHHHT--TCGGGSEEEEECTTCCH----- T ss_pred CCCHHHHHHHHHHCC--CCEEEEEEECCCCHHHHH---------HHHHHHHHHHHC--CCCCCCEEEEECCCCCH----- T ss_conf 999999999998649--999999752155233789---------999999999966--99889589998998999----- Q ss_pred HHHHHHHHHHHHCCCHHEEECCCHHHHH Q ss_conf 8633221011100200001112012321 Q gi|255764472|r 350 TMDLVDKIGYAQAFSFKYSPRLGTPGSN 377 (469) Q Consensus 350 Tl~~i~~~~~~~~~vf~yS~r~gT~Aa~ 377 (469) ++++++.+|.++ -|||.+.. T Consensus 228 --~~a~~lGaDavf------g~gt~~~d 247 (262) T 1xrs_B 228 --EIAKELGYDAGF------GPGRFADD 247 (262) T ss_dssp --HHHHTTTCSEEE------CTTCCHHH T ss_pred --HHHHHCCCCEEC------CCCCCHHH T ss_conf --999977998876------99988999 No 36 >2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A Probab=46.58 E-value=12 Score=15.55 Aligned_cols=39 Identities=18% Similarity=0.222 Sum_probs=26.7 Q ss_pred EECCCCCCHHHHHHHHHHHHHCCCEECC--C-----------CCCCCEEEEECCC Q ss_conf 9579856887899999999987986877--6-----------0108899992783 Q gi|255764472|r 30 KSYGCQMNVYDSLRMEDMFFSQGYERVN--S-----------MDDADLIVLNTCH 71 (469) Q Consensus 30 ~TlGC~~N~~Dse~i~~~L~~~G~~~~~--~-----------~~~ADviiINTCs 71 (469) +-+||-.+.. -++..|.+.||+++- + ..+||++|++... T Consensus 48 ~~l~~~~~~~---g~r~~le~~G~e~v~~~~~~~~~~~~~~~l~Dad~vi~~~~~ 99 (393) T 2nac_A 48 QLLGSVSGEL---GLRKYLESNGHTLVVTSDKDGPDSVFERELVDADVVISQPFW 99 (393) T ss_dssp SCCSBTTTGG---GCHHHHHHTTCEEEEESCCSSTTSHHHHHHTTCSEEEEBTTB T ss_pred CCCCCCCCCC---CHHHHHHHCCCEEEEECCCCCCHHHHHHHCCCCEEEEECCCC T ss_conf 1012123311---569999978988999479988568998405776599854777 No 37 >2h1q_A Hypothetical protein; ZP_00559375.1, structural genomics, PSI-2, protein structure initiative; 2.01A {Desulfitobacterium hafniense dcb-2} SCOP: c.67.3.1 PDB: 3l5o_A Probab=46.29 E-value=6.3 Score=17.55 Aligned_cols=38 Identities=8% Similarity=-0.018 Sum_probs=18.5 Q ss_pred EEEEECCCCCCCCCC---CCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 787412332446811---10012213764100588999887 Q gi|255764472|r 178 AFLTIQEGCDKFCTF---CVVPYTRGIEISRSLSQVVDEAR 215 (469) Q Consensus 178 a~ikI~~GC~~~Csf---C~ip~~RG~~rSr~~~~Iv~ei~ 215 (469) .+|+..+||--..+. |..+...|.+..+|..++.+-++ T Consensus 47 t~V~~~~G~Gla~t~~~~~~~~~~~g~l~g~~l~ela~~~~ 87 (270) T 2h1q_A 47 SVIRSGNGVGLGPNRPFETRMPMLTQNLLGLPLRVAAGCVK 87 (270) T ss_dssp EEEEETTEEEEEECCSSSCCCHHHHHHHTTSBHHHHHGGGG T ss_pred EEEECCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHCC T ss_conf 99990896588356887765654356746999999998722 No 38 >2i5g_A Amidohydrolase; NYSGXRC, NYSGXRC-9311A, PSI2, structural genomics, protein structure initiative; 2.60A {Pseudomonas aeruginosa} Probab=43.05 E-value=13 Score=15.17 Aligned_cols=221 Identities=19% Similarity=0.249 Sum_probs=101.2 Q ss_pred HHHHHHHHCCCEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHH-- Q ss_conf 999999987986877601088999927832507999999999999987676642189818999647301087889874-- Q gi|255764472|r 43 RMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRR-- 120 (469) Q Consensus 43 ~i~~~L~~~G~~~~~~~~~ADviiINTCsV~~~ae~k~~~~i~~~~~~~~~~~k~~p~~~IvVtGC~aq~~~e~l~~~-- 120 (469) ..-..+.+.|.. . +.-|+++.+.. +++.+.|..++++ +.++|+....+.- .+++.+. T Consensus 24 ~~~~~~~~gGv~---------a-~~~tv~~~e~~-~~~l~~i~~~~~~----i~~~~d~~~~~~s------~~Di~~a~~ 82 (325) T 2i5g_A 24 ELFEDMRKGGLT---------A-ANCTVSVWEGF-QATVNNITASNKL----IRDNSDLVIPVRS------TADIRKAKE 82 (325) T ss_dssp HHHHHHHHTTCC---------E-EEEECCSSCCH-HHHHHHHHHHHHH----HHHTTTTEEECSS------HHHHHHHHH T ss_pred HHHHHHHHCCCC---------E-EEEEEEECCCH-HHHHHHHHHHHHH----HHHCCCCEEEECC------HHHHHHHHH T ss_conf 999999861998---------7-99987645479-9999999999999----9978880999799------999999997 Q ss_pred HCCCCCCCCCHHHCCHH---HHHHH-HCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCHH Q ss_conf 10011001100111316---88875-305970023554411244433333457567777257874123324468111001 Q gi|255764472|r 121 SPIVNVVVGPQTYYRLP---ELLER-ARFGKRVVDTDYSVEDKFERLSIVDGGYNRKRGVTAFLTIQEGCDKFCTFCVVP 196 (469) Q Consensus 121 ~p~vd~vig~~~~~~i~---~~i~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ikI~~GC~~~CsfC~ip 196 (469) ...+-+++|.+.-..|. +.|+. ...|-+.....+ ...+ .+..||... T Consensus 83 ~gk~a~~l~~Eg~~~l~~dl~~l~~~y~lGvR~~~LT~----------------n~~N------~~g~g~~~~------- 133 (325) T 2i5g_A 83 QGKTGILYGFQNAHAFEDQIGYVEVFKQLGVGIVQMCY----------------NTQN------LVGTGCYER------- 133 (325) T ss_dssp TTCEEEEEEESCGGGGTTCTHHHHHHHHTTEEEEESCC----------------SSBC------SSCBBTTSC------- T ss_pred CCCEEEEEECCCCCCCCCCHHHHHHHHHCCCEEEEEEC----------------CCCC------CCCCCCCCC------- T ss_conf 69989998067830116878999999973760898304----------------8999------877788678------- Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCCCHHHHHHHCCCCCC---CCCCCCCCCCCC Q ss_conf 22137641005889998876310133105873145411341134443100021678862044430---013544210001 Q gi|255764472|r 197 YTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIKGLV---RLRYTTSHPRDM 273 (469) Q Consensus 197 ~~RG~~rSr~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y~g~~~~~~~~~l~~Ll~~l~~i~~~~---riR~~s~~P~~~ 273 (469) ..| -|.-=.++|+|..++ |. + .|++.- ...++.+.++. ++.|-+. -.|-..-+|..+ T Consensus 134 -~~G--LT~fG~~vV~emn~l---Gm---i---iDlSH~-------s~~t~~d~i~~-S~~Pvi~SHS~~ral~~h~RNl 193 (325) T 2i5g_A 134 -DGG--LSGFGREIVAEMNRV---GI---M---CDLSHV-------GSKTSEEVILE-SKKPVCYSHCLPSGLKEHPRNK 193 (325) T ss_dssp -CCC--CCHHHHHHHHHHHHH---TC---E---EECTTB-------CHHHHHHHHHH-CSSCCEEEEECBTTTCCCTTSB T ss_pred -CCC--CCHHHHHHHHHHHHC---CE---E---EECCCC-------CHHHHHHHHHH-CCCCEEEEECCCCCCCCCCCCC T ss_conf -999--766679999999975---93---8---985889-------88999999841-2697688613531356777889 Q ss_pred CCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHC--CCCCCCEEEECCCC Q ss_conf 00036652022111220133211145789987303334411467899987401--34432000001352 Q gi|255764472|r 274 SDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR--PDIAISSDFIVGFP 340 (469) Q Consensus 274 ~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~~~r~~~--p~~~i~tdiIvGfP 340 (469) +|+.|.++++.+-+.- +.+ -+..|+. +...+.+++.+.++.+.+.. ..+.|++||=-+.| T Consensus 194 ~De~lraia~~GGvIG---i~~---~~~~l~~-~~~~t~~~~~~hi~~~~~l~G~dhVgiGsDfd~~~~ 255 (325) T 2i5g_A 194 SDEELKFIADHGGFVG---VTM---FAPFLKK-GIDSTIDDYAEAIEYVMNIVGEDAIGIGTDFTQGHG 255 (325) T ss_dssp CHHHHHHHHHTTCEEE---ECC---CGGGSSS-GGGCBHHHHHHHHHHHHHHHCTTSEEECCCBCTTCC T ss_pred CHHHHHHHHHCCCEEE---EEC---CCHHHCC-CCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCC T ss_conf 8999999998498684---514---7104338-864449999999999997548511576564333456 No 39 >1qgu_B Protein (nitrogenase molybdenum iron protein); biological nitrogen fixation, nitrogen metabolism, molybdoenzymes, electron transfer; HET: HCA CFM CLF; 1.60A {Klebsiella pneumoniae} SCOP: c.92.2.3 PDB: 1h1l_B* 1qh1_B* 1qh8_B* Probab=41.53 E-value=12 Score=15.60 Aligned_cols=38 Identities=13% Similarity=0.237 Sum_probs=28.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHH Q ss_conf 99999999999998767664218981899964730108788987 Q gi|255764472|r 76 AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILR 119 (469) Q Consensus 76 ae~k~~~~i~~~~~~~~~~~k~~p~~~IvVtGC~aq~~~e~l~~ 119 (469) .++++.+.|..+.+ +-+|....|+|+|+++.-++++.. T Consensus 125 G~~~L~eaI~~~~~------~~~P~~I~V~tTC~~evIGDDl~~ 162 (519) T 1qgu_B 125 GNNNMNLGLQNASA------LYKPEIIAVSTTCMAEVIGDDLQA 162 (519) T ss_dssp SHHHHHHHHHHHHH------HHCCSEEEEEECHHHHHHTCCHHH T ss_pred CHHHHHHHHHHHHH------HCCCCEEEEECCCHHHHHCCCHHH T ss_conf 68999999999998------539989999768779883279999 No 40 >1w5q_A Delta-aminolevulinic acid dehydratase; synthase, evolution, metalloenzyme, porphobilinogen synthase, protein engineering,; 1.4A {Pseudomonas aeruginosa} PDB: 1w5p_A* 1w5o_A 1w5n_A 1w56_A 1w5m_A 1w54_A 1gzg_A* 1b4k_A 2woq_A* 2c14_A* 2c16_A* 2c19_A* 2c15_A* 2c18_A* 2c13_A* Probab=40.15 E-value=15 Score=14.86 Aligned_cols=35 Identities=26% Similarity=0.416 Sum_probs=22.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECC Q ss_conf 012213764100588999887631013310587314 Q gi|255764472|r 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ 230 (469) Q Consensus 195 ip~~RG~~rSr~~~~Iv~ei~~l~~~G~kEi~L~g~ 230 (469) ||..-|-+| .++++++++++.+++.|++-|.|-|. T Consensus 54 I~SMPGv~R-~Sid~L~~eie~~~~lGI~aV~LFgv 88 (337) T 1w5q_A 54 IPSMPGVER-LSIDQLLIEAEEWVALGIPALALFPV 88 (337) T ss_dssp CTTSTTCEE-EEHHHHHHHHHHHHHTTCCEEEEEEC T ss_pred CCCCCCCEE-ECHHHHHHHHHHHHHCCCCEEEEECC T ss_conf 689998436-68999999999999879978998041 No 41 >3obk_A Delta-aminolevulinic acid dehydratase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, lyase; HET: PBG; 2.50A {Toxoplasma gondii ME49} Probab=40.12 E-value=12 Score=15.49 Aligned_cols=36 Identities=17% Similarity=0.266 Sum_probs=27.5 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECC Q ss_conf 0012213764100588999887631013310587314 Q gi|255764472|r 194 VVPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLGQ 230 (469) Q Consensus 194 ~ip~~RG~~rSr~~~~Iv~ei~~l~~~G~kEi~L~g~ 230 (469) -||..-|-+| .+++.+++|++.+++.|++-|.|-|. T Consensus 64 ~I~sMPGi~R-~Sid~L~~ei~~~~~lGI~avlLFpv 99 (360) T 3obk_A 64 PIPSMPGQSR-LSMEDLLKEVGEARSYGIKAFMLFPK 99 (360) T ss_dssp ECTTSTTCEE-ECHHHHHHHHHHHHHTTCCEEEEEEE T ss_pred ECCCCCCCCE-ECHHHHHHHHHHHHHCCCCEEEEECC T ss_conf 4589998535-68999999999999889988996077 No 42 >1m1n_B Nitrogenase molybdenum-iron protein beta chain; atomic resolution, FEMO cofactor, nitrogen fixation, central nitrogen ligand; HET: HCA CLF CFN; 1.16A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1l5h_B* 1m1y_B* 1m34_B* 1n2c_B* 2afh_B* 2afi_B* 2afk_B* 2min_B* 3k1a_B* 3min_B* 1g20_B* 1fp4_B* 1g21_B* Probab=39.91 E-value=13 Score=15.30 Aligned_cols=38 Identities=16% Similarity=0.309 Sum_probs=27.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHH Q ss_conf 99999999999998767664218981899964730108788987 Q gi|255764472|r 76 AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILR 119 (469) Q Consensus 76 ae~k~~~~i~~~~~~~~~~~k~~p~~~IvVtGC~aq~~~e~l~~ 119 (469) .++++.+.|..+.+ +-+|....|+++|+++.-++++.. T Consensus 126 G~~~L~e~I~~~~~------~y~P~~I~V~tTC~~evIGDDl~a 163 (522) T 1m1n_B 126 GQQNMKDGLQNCKA------TYKPDMIAVSTTCMAEVIGDDLNA 163 (522) T ss_dssp SHHHHHHHHHHHHH------HHCCSEEEEEECHHHHHHTCCHHH T ss_pred CHHHHHHHHHHHHH------HHCCCEEEEECCCHHHHHCCCHHH T ss_conf 58999999999998------629999999778789985079999 No 43 >3i9v_6 NADH-quinone oxidoreductase subunit 6; electron transport, respiratory chain, 4Fe- 4S, cell membrane, flavoprotein, FMN, iron; HET: FMN; 3.10A {Thermus thermophilus HB8} PDB: 2fug_6* 3iam_6* 3ias_6* 3m9s_6* Probab=39.78 E-value=2.9 Score=20.03 Aligned_cols=74 Identities=15% Similarity=0.256 Sum_probs=41.4 Q ss_pred EEEEEEECCCCCCHHHHHHHH-----HHHHHCCCE-ECCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 079999579856887899999-----999987986-87760108899992783250799999999999998767664218 Q gi|255764472|r 25 QRFFVKSYGCQMNVYDSLRME-----DMFFSQGYE-RVNSMDDADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEG 98 (469) Q Consensus 25 kkv~i~TlGC~~N~~Dse~i~-----~~L~~~G~~-~~~~~~~ADviiINTCsV~~~ae~k~~~~i~~~~~~~~~~~k~~ 98 (469) +..|..+|||.- -+.|.+. ..+...|.+ .+.+|..||+++|.- +||.+..... .++- +. -.. T Consensus 34 ~Slw~~~~g~~c--C~iE~~a~~~p~yD~eRfG~~~~~aSPR~ADvllVtG-~vT~km~~~l----~~~y---eq--mp~ 101 (181) T 3i9v_6 34 NSLWPATFGLAC--CAIEMMASTDARNDLARFGSEVFRASPRQADVMIVAG-RLSKKMAPVM----RRVW---EQ--MPD 101 (181) T ss_dssp TSCCCEEEECST--HHHHHTTTTTTC----------------CCCCEEEES-CCBTTTHHHH----HHHH---HS--SCS T ss_pred CCCCCCCCCCCC--HHHHHHHCCCCCCCHHHHCCCCCCCCCCCCCEEEECC-CCHHHHHHHH----HHHH---HH--CCC T ss_conf 897501055776--3989976149877777732424468998677889717-1158789999----9999---84--889 Q ss_pred CCCEEEEECCCC Q ss_conf 981899964730 Q gi|255764472|r 99 GDLLVVVAGCVA 110 (469) Q Consensus 99 p~~~IvVtGC~a 110 (469) |...|.++.|.. T Consensus 102 PK~VIA~GaCa~ 113 (181) T 3i9v_6 102 PKWVISMGACAS 113 (181) T ss_dssp SCCEEEEHHHHH T ss_pred CCEEEEECCCCC T ss_conf 853898552367 No 44 >2btv_A T2A, T2B, protein (VP3 core protein); virus/viral protein, icosahedral virus; 3.50A {Bluetongue virus} SCOP: e.28.1.1 Probab=39.49 E-value=15 Score=14.79 Aligned_cols=22 Identities=9% Similarity=-0.003 Sum_probs=11.2 Q ss_pred CCHHHHHCCCCCCHHHHHHHHH Q ss_conf 2012321436889899999999 Q gi|255764472|r 371 LGTPGSNMLEQVDENVKAERLL 392 (469) Q Consensus 371 ~gT~Aa~m~~qV~~~vk~~R~~ 392 (469) .++|+..--.+.+.++..-|+. T Consensus 733 d~~P~~~~~v~~~~~~~~~~A~ 754 (901) T 2btv_A 733 EAPPEIDRVVQYTYEIARLQAN 754 (901) T ss_dssp SSCCCGGGEEEECHHHHHHHHH T ss_pred CCCCCCCCEEECCHHHHHHHCC T ss_conf 6899877432038999997714 No 45 >1yht_A DSPB; beta barrel, hydrolase; 2.00A {Aggregatibacter actinomycetemcomitans} SCOP: c.1.8.6 Probab=38.47 E-value=15 Score=14.68 Aligned_cols=19 Identities=21% Similarity=0.076 Sum_probs=9.5 Q ss_pred HHHHHHHHHHHHHHHCCCC Q ss_conf 0058899988763101331 Q gi|255764472|r 205 RSLSQVVDEARKLIDNGVC 223 (469) Q Consensus 205 r~~~~Iv~ei~~l~~~G~k 223 (469) ++.++|.+=++...++|++ T Consensus 92 YT~~di~eiv~yA~~rgI~ 110 (367) T 1yht_A 92 LSYRQLDDIKAYAKAKGIE 110 (367) T ss_dssp BCHHHHHHHHHHHHHTTCE T ss_pred CCHHHHHHHHHHHHHCCCE T ss_conf 4899999999999986988 No 46 >1fui_A L-fucose isomerase; ketol isomerase, fucose metabolism, L-fucose to L-fuculose conversion; HET: FOC; 2.50A {Escherichia coli K12} SCOP: b.43.2.1 c.85.1.1 Probab=37.95 E-value=16 Score=14.62 Aligned_cols=47 Identities=19% Similarity=0.351 Sum_probs=25.3 Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHH Q ss_conf 08899992783250799999999999998767664218981899964730108788987 Q gi|255764472|r 61 DADLIVLNTCHIREKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILR 119 (469) Q Consensus 61 ~ADviiINTCsV~~~ae~k~~~~i~~~~~~~~~~~k~~p~~~IvVtGC~aq~~~e~l~~ 119 (469) ..+++|-.|| |-..+|.. ....++ ++++.+..|+|++|++ ++.+... T Consensus 52 ~ve~Vi~d~~-i~~~~eA~--~~aekf-------~~~~Vd~~i~v~p~w~--~gset~~ 98 (591) T 1fui_A 52 AVECVISDTC-IAGMAEAA--ACEEKF-------SSQNVGLTITVTPCWC--YGSETID 98 (591) T ss_dssp BCCEEECSSC-BCSHHHHH--HHHHHH-------HTTTEEEEEEEESSCC--CHHHHSC T ss_pred CEEEEECCCC-CCCHHHHH--HHHHHH-------HHCCCCEEEEEEEECC--CCCCHHH T ss_conf 6389963871-57899999--999998-------7638988999976401--6640021 No 47 >1itu_A Renal dipeptidase; glycoprotein, membrane-bound, zinc protease beta-lactamase, cilastatin, complex (hydrolase/inhibitor); HET: NAG CIL; 2.00A {Homo sapiens} SCOP: c.1.9.7 PDB: 1itq_A* Probab=37.83 E-value=16 Score=14.61 Aligned_cols=66 Identities=15% Similarity=0.248 Sum_probs=36.2 Q ss_pred CCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHC--CCCCCCEEE Q ss_conf 1354421000100036652022111220133211145789987303334411467899987401--344320000 Q gi|255764472|r 263 LRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR--PDIAISSDF 335 (469) Q Consensus 263 iR~~s~~P~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~~~r~~~--p~~~i~tdi 335 (469) .|-..-+|..++|+.|+++++.+-+. ++- .-+.-|.. ....+.+++.+-++.+.+.. -.+.|++|| T Consensus 222 ~ral~~h~RNltDe~iraIa~~GGvI-----Gi~-~~~~fl~~-~~~~~~~~~~~Hi~yi~~l~G~dhVgiGsDf 289 (369) T 1itu_A 222 AYSVCASRRNVPDDVLRLVKQTDSLV-----MVN-FYNNYISC-TNKANLSQVADHLDHIKEVAGARAVGFGGDF 289 (369) T ss_dssp BTTTSCCTTSBCHHHHHHHHHHTCEE-----EEC-CCHHHHTS-SSCCBHHHHHHHHHHHHHHHCGGGEEECCCT T ss_pred HHHHHCCCCCCCHHHHHHHHHCCCCE-----EEE-CCCCCCCC-CCCHHHHHHHHHHHHHHHHCCCCEEEECCCC T ss_conf 46541566799889999999649957-----650-56111157-5300599999999999986296427877677 No 48 >1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y Probab=37.60 E-value=16 Score=14.58 Aligned_cols=30 Identities=17% Similarity=0.401 Sum_probs=17.4 Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEC Q ss_conf 7607999957985688789999999998798687 Q gi|255764472|r 23 VPQRFFVKSYGCQMNVYDSLRMEDMFFSQGYERV 56 (469) Q Consensus 23 ~~kkv~i~TlGC~~N~~Dse~i~~~L~~~G~~~~ 56 (469) |.||+.+.- =|..-.+.+...|...||+++ T Consensus 1 M~~rILiVD----D~~~~r~~l~~~L~~~g~~v~ 30 (120) T 1tmy_A 1 MGKRVLIVD----DAAFMRMMLKDIITKAGYEVA 30 (120) T ss_dssp -CCEEEEEC----SCHHHHHHHHHHHHHTTCEEE T ss_pred CCCCEEEEE----CCHHHHHHHHHHHHHCCCEEE T ss_conf 998699991----999999999999998799899 No 49 >2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1 Probab=36.84 E-value=16 Score=14.50 Aligned_cols=31 Identities=16% Similarity=0.226 Sum_probs=15.6 Q ss_pred HHHHHHHHHHCCCEEC---------CCCCCCCEEEEECCC Q ss_conf 9999999998798687---------760108899992783 Q gi|255764472|r 41 SLRMEDMFFSQGYERV---------NSMDDADLIVLNTCH 71 (469) Q Consensus 41 se~i~~~L~~~G~~~~---------~~~~~ADviiINTCs 71 (469) ++.|+..|.+.|++.. ++..++|.+|+-|.| T Consensus 17 A~~ia~~l~~~g~~~~~~~~~~~~~~dl~~~d~ii~gspT 56 (137) T 2fz5_A 17 ANEIEAAVKAAGADVESVRFEDTNVDDVASKDVILLGCPA 56 (137) T ss_dssp HHHHHHHHHHTTCCEEEEETTSCCHHHHHTCSEEEEECCC T ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHEEEECCC T ss_conf 9999999875688541220889888888864430673244 No 50 >3k7p_A Ribose 5-phosphate isomerase; pentose phosphate pathway, type B ribose 5-phosphate isomera (RPIB), R5P; 1.40A {Trypanosoma cruzi strain cl brener} PDB: 3k7s_A* 3k7o_A* 3k8c_A* Probab=36.14 E-value=16 Score=14.59 Aligned_cols=43 Identities=14% Similarity=0.122 Sum_probs=27.6 Q ss_pred HHHHHHHHCCCCCEEEEEEECCCCCCHHH-HHHHHHHHHHCCCEECC Q ss_conf 79887631457760799995798568878-99999999987986877 Q gi|255764472|r 12 HMVSQIVDQCIVPQRFFVKSYGCQMNVYD-SLRMEDMFFSQGYERVN 57 (469) Q Consensus 12 ~~~~~~~~~~~~~kkv~i~TlGC~~N~~D-se~i~~~L~~~G~~~~~ 57 (469) +-.+.+..-+.|+|||+| ||-..=++ -+.|...|.+.||++++ T Consensus 10 ~~~~~~p~~~~M~kkI~I---gsDHaG~~lK~~l~~~L~~~g~ev~D 53 (179) T 3k7p_A 10 HSSGLVPRGSHMTRRVAI---GTDHPAFAIHENLILYVKEAGDEFVP 53 (179) T ss_dssp -----------CCEEEEE---EECTGGGGGHHHHHHHHHHTCTTEEE T ss_pred CCCCCCCCCCCCCCCEEE---EECCHHHHHHHHHHHHHHHCCCEEEE T ss_conf 444666576678881899---82862899999999999986997997 No 51 >2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus} Probab=35.96 E-value=17 Score=14.40 Aligned_cols=52 Identities=8% Similarity=0.080 Sum_probs=36.6 Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHCCCEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHHH Q ss_conf 079999579856887899999999987986877601088999927832507999999999999 Q gi|255764472|r 25 QRFFVKSYGCQMNVYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87 (469) Q Consensus 25 kkv~i~TlGC~~N~~Dse~i~~~L~~~G~~~~~~~~~ADviiINTCsV~~~ae~k~~~~i~~~ 87 (469) .|+|+.|+| +|.+.+...+.+.|. +.+|.+++-++....+..+++.+.|+.. T Consensus 8 Mr~~i~~vG-----Fd~~~~ir~l~~~~~------~~~d~v~l~~~~~~~~~~~~a~~~i~~~ 59 (244) T 2wte_A 8 MKSYFVTMG-----FNETFLLRLLNETSA------QKEDSLVIVVPSPIVSGTRAAIESLRAQ 59 (244) T ss_dssp CCEEEECCC-----SCCHHHHHHHHHTTC------CTTSEEEEEEESSCCHHHHHHHHHHHHH T ss_pred CEEEEECCC-----CCHHHHHHHHHHCCC------CCCCEEEEEECCCCCHHHHHHHHHHHHH T ss_conf 279998787-----783999999984277------7687899992898645799999999999 No 52 >1pv8_A Delta-aminolevulinic acid dehydratase; porphobilinogen synthase, tetrapyrrole biosynthesis, reactio intermediate, lyase; HET: PB1; 2.20A {Homo sapiens} SCOP: c.1.10.3 PDB: 1e51_A* 2z0i_A 2z1b_A Probab=35.65 E-value=14 Score=14.91 Aligned_cols=24 Identities=17% Similarity=0.479 Sum_probs=12.7 Q ss_pred HHHHHHHHHHHHHHCCCCEEEEEC Q ss_conf 058899988763101331058731 Q gi|255764472|r 206 SLSQVVDEARKLIDNGVCEITLLG 229 (469) Q Consensus 206 ~~~~Iv~ei~~l~~~G~kEi~L~g 229 (469) +++.++++++.+++.|++-|.|-+ T Consensus 57 sid~L~~~ie~~~~lGI~av~LF~ 80 (330) T 1pv8_A 57 GVKRLEEMLRPLVEEGLRCVLIFG 80 (330) T ss_dssp CHHHHHHHHHHHHHHTCCEEEEEE T ss_pred CHHHHHHHHHHHHHCCCCEEEEEC T ss_conf 999999999999988999999958 No 53 >1yir_A Naprtase 2, nicotinate phosphoribosyltransferase 2; structural genomics, protein structure initiative, hypothetical protein, NYSGXRC, PSI; 2.10A {Pseudomonas aeruginosa} SCOP: c.1.17.2 d.41.2.2 Probab=35.56 E-value=13 Score=15.32 Aligned_cols=106 Identities=19% Similarity=0.180 Sum_probs=55.1 Q ss_pred CCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHC-CCCCCCEEEECCCC Q ss_conf 01354421000100036652022111220133211145789987303334411467899987401-34432000001352 Q gi|255764472|r 262 RLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR-PDIAISSDFIVGFP 340 (469) Q Consensus 262 riR~~s~~P~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~~~r~~~-p~~~i~tdiIvGfP 340 (469) -+|+-|-+|..+..+.++.+.+.+ +-|.-..=++|++-. .+.+.++...++.+. .-..++|.++.++| T Consensus 285 gvR~DSGD~~~~~~k~~~~l~~~g-~~~~~k~ii~Sdgld----------~e~i~~~~~~~~~~~~~~fGVGT~l~~~~~ 353 (408) T 1yir_A 285 GLRHDSGDPLLWAEKTIAHYLKLG-IDPLTKTLVFSDGLD----------LPRALKIYRALQGRINVSFGIGTHFTCDLP 353 (408) T ss_dssp EEEECSSCHHHHHHHHHHHHHHHT-CCGGGSEEEECSSCC----------HHHHHHHHHHHTTTSEEEEEECHHHHSCCT T ss_pred CCCCCCCCHHHHHHHHHHHHHHCC-CCCCCCEEEEECCCC----------HHHHHHHHHHHCCCCCCEEECCCCEECCCC T ss_conf 766678874999999999999769-998752799956998----------999999999847997728970756033899 Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCHHEEECCCHHHHHCCC-----CCCHHHHHHHHHHH Q ss_conf 2012478988633221011100200001112012321436-----88989999999999 Q gi|255764472|r 341 GETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLE-----QVDENVKAERLLCL 394 (469) Q Consensus 341 gETeedf~~Tl~~i~~~~~~~~~vf~yS~r~gT~Aa~m~~-----qV~~~vk~~R~~~l 394 (469) |-. ++++ |++-..-.|.|.+++.+ +.|+....+|++++ T Consensus 354 ~~~------~l~~----------v~Klv~~~g~p~~KiS~~~gK~~~~~~~~~~~~k~v 396 (408) T 1yir_A 354 GVE------PMNI----------VVKMSACNGHPVAKISDTPGKAQCRDPDFIHYLKHV 396 (408) T ss_dssp TCC------CCCE----------EEEEEEETTEECCCCCSCC-------CHHHHHHHHH T ss_pred CCC------CCEE----------EEEEHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHH T ss_conf 999------8608----------997721088533573289876038987899987572 No 54 >1jak_A Beta-N-acetylhexosaminidase; glycoside hydrolase, family 20, substrate-assisted catalysis, alpha/beta barrel; HET: IFG; 1.75A {Streptomyces plicatus} SCOP: c.1.8.6 d.92.2.1 PDB: 1hp4_A* 1hp5_A* 1m01_A* 1m04_A* 1m03_A* Probab=35.28 E-value=17 Score=14.33 Aligned_cols=16 Identities=31% Similarity=0.362 Sum_probs=7.2 Q ss_pred CCCCHHHHHHHHHHHH Q ss_conf 3441146789998740 Q gi|255764472|r 310 HTAYEYRQIIDRIRSV 325 (469) Q Consensus 310 ~~~e~~~~~i~~~r~~ 325 (469) ||.++++++++..+++ T Consensus 228 YT~~di~elv~yA~~r 243 (512) T 1jak_A 228 YTKAEYKEIVRYAASR 243 (512) T ss_dssp BCHHHHHHHHHHHHHT T ss_pred CCHHHHHHHHHHHHHH T ss_conf 0999999999999986 No 55 >3f6c_A Positive transcription regulator EVGA; structural genomics, , PSI-2, protein structure initiative; 1.45A {Escherichia coli k-12} Probab=35.08 E-value=17 Score=14.31 Aligned_cols=15 Identities=7% Similarity=0.275 Sum_probs=7.6 Q ss_pred HHHHHHHHHCCCEEC Q ss_conf 999999998798687 Q gi|255764472|r 42 LRMEDMFFSQGYERV 56 (469) Q Consensus 42 e~i~~~L~~~G~~~~ 56 (469) +.+...|...||+++ T Consensus 15 ~~l~~~L~~~~~~vv 29 (134) T 3f6c_A 15 AAIRNLLIKNDIEIL 29 (134) T ss_dssp HHHHHHHHHTTEEEE T ss_pred HHHHHHHHHCCCEEE T ss_conf 999999986899899 No 56 >2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima} Probab=35.05 E-value=17 Score=14.30 Aligned_cols=18 Identities=11% Similarity=0.316 Sum_probs=8.9 Q ss_pred HHHHHHHHHHHHCCCEEC Q ss_conf 789999999998798687 Q gi|255764472|r 39 YDSLRMEDMFFSQGYERV 56 (469) Q Consensus 39 ~Dse~i~~~L~~~G~~~~ 56 (469) .-.+.+...|...||++. T Consensus 15 ~~~~~l~~~L~~~G~~v~ 32 (142) T 2qxy_A 15 ITFLAVKNALEKDGFNVI 32 (142) T ss_dssp HHHHHHHHHHGGGTCEEE T ss_pred HHHHHHHHHHHHCCCEEE T ss_conf 999999999998799999 No 57 >1c7s_A Beta-N-acetylhexosaminidase; glycosyl hydrolase, chitinolysis, A/B(TIM)-barrel, site directed mutagenesis; HET: CBS; 1.80A {Serratia marcescens} SCOP: b.1.18.2 b.2.2.3 c.1.8.6 d.92.2.1 PDB: 1c7t_A* 1qba_A 1qbb_A* Probab=34.88 E-value=17 Score=14.28 Aligned_cols=19 Identities=11% Similarity=-0.038 Sum_probs=13.5 Q ss_pred HHHHHHHHHHHHHHHCCCC Q ss_conf 0058899988763101331 Q gi|255764472|r 205 RSLSQVVDEARKLIDNGVC 223 (469) Q Consensus 205 r~~~~Iv~ei~~l~~~G~k 223 (469) ++.+++.+=++...++|++ T Consensus 397 YT~edikeIv~YA~~RgI~ 415 (858) T 1c7s_A 397 FSRQDYIDIIKYAQARQIE 415 (858) T ss_dssp BCHHHHHHHHHHHHTTTCE T ss_pred CCHHHHHHHHHHHHHCCCE T ss_conf 2399999999999974998 No 58 >1h7n_A 5-aminolaevulinic acid dehydratase; lyase, aldolase, TIM barrel, tetrapyrrole synthesis; HET: SHF; 1.6A {Saccharomyces cerevisiae} SCOP: c.1.10.3 PDB: 1h7p_A* 1h7r_A* 1ohl_A* 1qml_A 1qnv_A 1w31_A* 1h7o_A* 1eb3_A* 1gjp_A* 1ylv_A* 1aw5_A Probab=34.67 E-value=16 Score=14.46 Aligned_cols=34 Identities=18% Similarity=0.349 Sum_probs=20.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEC Q ss_conf 01221376410058899988763101331058731 Q gi|255764472|r 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLG 229 (469) Q Consensus 195 ip~~RG~~rSr~~~~Iv~ei~~l~~~G~kEi~L~g 229 (469) |+..-|-+| .+++.++++++.+++.|++-|.|-| T Consensus 57 I~sMPGv~R-~sid~L~~~i~~~~~lGI~av~LFg 90 (342) T 1h7n_A 57 IDSLPNINR-IGVNRLKDYLKPLVAKGLRSVILFG 90 (342) T ss_dssp CTTSTTCEE-ECHHHHHHHHHHHHHTTCCEEEEEE T ss_pred CCCCCCCCE-ECHHHHHHHHHHHHHCCCCEEEECC T ss_conf 799998633-2899999999999986999799679 No 59 >3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} Probab=34.43 E-value=18 Score=14.23 Aligned_cols=36 Identities=8% Similarity=0.314 Sum_probs=23.9 Q ss_pred CHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHH Q ss_conf 11467899987401344320000013522012478988633 Q gi|255764472|r 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDL 353 (469) Q Consensus 313 e~~~~~i~~~r~~~p~~~i~tdiIvGfPgETeedf~~Tl~~ 353 (469) +++.+.++++|+.- ..-+.|||==-|.||..+.++- T Consensus 194 ~~~~~~i~~ik~~t-----~~Pv~vGFGI~~~e~v~~~~~~ 229 (271) T 3nav_A 194 MPVHALLERLQQFD-----APPALLGFGISEPAQVKQAIEA 229 (271) T ss_dssp HHHHHHHHHHHHTT-----CCCEEECSSCCSHHHHHHHHHT T ss_pred CHHHHHHHHHHHCC-----CCCEEEEEEECCHHHHHHHHHC T ss_conf 02899999875336-----8972898301889999999873 No 60 >3id7_A Dipeptidase; streptomyces coelicolor A3(2), hydrolase; 1.30A {Streptomyces coelicolor} PDB: 3itc_A* 3k5x_A* Probab=34.13 E-value=18 Score=14.20 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=16.6 Q ss_pred CCCCCCCCCCCCHHHHHHCCCCCC Q ss_conf 354421000100036652022111 Q gi|255764472|r 264 RYTTSHPRDMSDCLIKAHGDLDVL 287 (469) Q Consensus 264 R~~s~~P~~~~~~li~~~~~~~~i 287 (469) |-..-+|..++|+.|+++++.+-+ T Consensus 216 ral~~h~RNltDeqlraIa~~GGv 239 (400) T 3id7_A 216 RAVCDHPRNIPDDVLERLSANGGM 239 (400) T ss_dssp TTTSCCTTSBCHHHHTTHHHHTCE T ss_pred HHHCCCCCCCCHHHHHHHHHCCCE T ss_conf 762667789879999999974988 No 61 >3dx5_A Uncharacterized protein ASBF; beta-alpha barrel, petrobactin synthesis, ASB locus, structural genomics, PSI-2, protein structure initiative; HET: MSE DHB TRS; 2.12A {Bacillus anthracis} Probab=33.89 E-value=18 Score=14.17 Aligned_cols=19 Identities=11% Similarity=-0.094 Sum_probs=14.5 Q ss_pred CCCCHHHHHHHHHHHHHHH Q ss_conf 5220124789886332210 Q gi|255764472|r 339 FPGETDDDFRATMDLVDKI 357 (469) Q Consensus 339 fPgETeedf~~Tl~~i~~~ 357 (469) -||+-+=||.+-++.++.+ T Consensus 228 ~~G~G~id~~~~~~~L~~~ 246 (286) T 3dx5_A 228 PLFEGIVNYDEIIQEVRDT 246 (286) T ss_dssp CGGGSSSCHHHHHHHHTTS T ss_pred CCCCCCCCHHHHHHHHHCC T ss_conf 8997135899999998789 No 62 >1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ... Probab=33.08 E-value=18 Score=14.08 Aligned_cols=35 Identities=11% Similarity=0.339 Sum_probs=21.8 Q ss_pred CHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHH Q ss_conf 1146789998740134432000001352201247898863 Q gi|255764472|r 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352 (469) Q Consensus 313 e~~~~~i~~~r~~~p~~~i~tdiIvGfPgETeedf~~Tl~ 352 (469) .++.+.++++|+.. ..-++|||==-|.|+..+.++ T Consensus 191 ~~~~~~i~~ik~~t-----~~Pv~vGFGI~~~e~v~~~~~ 225 (268) T 1qop_A 191 LPLHHLIEKLKEYH-----AAPALQGFGISSPEQVSAAVR 225 (268) T ss_dssp -CCHHHHHHHHHTT-----CCCEEEESSCCSHHHHHHHHH T ss_pred HHHHHHHHHHHHCC-----CCCCEEEECCCCHHHHHHHHH T ss_conf 56899999997546-----888357615699999999986 No 63 >2wqq_A Alpha-2,3-/2,8-sialyltransferase; GTA, cstii, glycosyltransferase; HET: CSF; 2.25A {Campylobacter jejuni} Probab=32.89 E-value=18 Score=14.09 Aligned_cols=22 Identities=27% Similarity=0.151 Sum_probs=17.5 Q ss_pred HHHHHHCCCCEEEEECCCCCEE Q ss_conf 8763101331058731454113 Q gi|255764472|r 214 ARKLIDNGVCEITLLGQNVNAW 235 (469) Q Consensus 214 i~~l~~~G~kEi~L~g~d~~~Y 235 (469) +......|++||.|.|.|.... T Consensus 137 LqlA~~LGfKeIYLiG~D~~~~ 158 (291) T 2wqq_A 137 CAVAIALGYKEIYLSGIDFYQN 158 (291) T ss_dssp HHHHHHTTCCEEEEESCCCC-- T ss_pred HHHHHHCCCCEEEEEEECCCCC T ss_conf 9999984998799995416877 No 64 >1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein structure initiative; 2.30A {Brucella melitensis 16M} Probab=31.81 E-value=19 Score=13.94 Aligned_cols=28 Identities=14% Similarity=0.243 Sum_probs=23.0 Q ss_pred EECCCCCCHHHHHHHHHHHHHCCCEECC Q ss_conf 9579856887899999999987986877 Q gi|255764472|r 30 KSYGCQMNVYDSLRMEDMFFSQGYERVN 57 (469) Q Consensus 30 ~TlGC~~N~~Dse~i~~~L~~~G~~~~~ 57 (469) ++.|..++..|-..+...|.+.|+..++ T Consensus 17 Q~~~~~~~~~~k~~i~~~L~~aGv~~IE 44 (295) T 1ydn_A 17 QNEKRFVPTADKIALINRLSDCGYARIE 44 (295) T ss_dssp HTSSSCCCHHHHHHHHHHHTTTTCSEEE T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCEEE T ss_conf 5999998999999999999981999899 No 65 >1l6s_A Porphobilinogen synthase; dehydratase, lyase; HET: CME DSB; 1.70A {Escherichia coli} SCOP: c.1.10.3 PDB: 1i8j_A* 1l6y_A* 1b4e_A Probab=31.79 E-value=16 Score=14.64 Aligned_cols=24 Identities=13% Similarity=0.387 Sum_probs=10.9 Q ss_pred HHHHHHHHHHHHHHCCCCEEEEEC Q ss_conf 058899988763101331058731 Q gi|255764472|r 206 SLSQVVDEARKLIDNGVCEITLLG 229 (469) Q Consensus 206 ~~~~Iv~ei~~l~~~G~kEi~L~g 229 (469) +++.+++|++.+++.|++-|.|-| T Consensus 56 Sid~l~~~i~~~~~lGI~av~LFp 79 (323) T 1l6s_A 56 PEKHLAREIERIANAGIRSVMTFG 79 (323) T ss_dssp EGGGHHHHHHHHHHHTCCEEEEEE T ss_pred CHHHHHHHHHHHHHCCCCCEEEEC T ss_conf 899999999999977976045435 No 66 >2x7l_M HIV REV; nuclear export, immune system, post-transcriptional regulation; 3.17A {Human immunodeficiency virus type 3} Probab=31.12 E-value=20 Score=13.86 Aligned_cols=67 Identities=18% Similarity=0.236 Sum_probs=47.4 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEECCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE Q ss_conf 352201247898863322101110020000111201232143688989999999999999999999999985797899 Q gi|255764472|r 338 GFPGETDDDFRATMDLVDKIGYAQAFSFKYSPRLGTPGSNMLEQVDENVKAERLLCLQKKLREQQVSFNDACVGQIIE 415 (469) Q Consensus 338 GfPgETeedf~~Tl~~i~~~~~~~~~vf~yS~r~gT~Aa~m~~qV~~~vk~~R~~~l~~~~~~~~~~~~~~~iG~~~~ 415 (469) |=-|+++|+...++++++-+. .- -||-.-+||..|.. | ..+|.+.-+.....++...+..++|+-.+ T Consensus 2 GRSgd~DeeLL~avRiIkiLY--QS--NPyP~peGTRqaRR-N------RRRRWR~RQrQI~~is~rILst~LGRp~E 68 (115) T 2x7l_M 2 GRSGDSDEDLLKAVRLIKFLY--QS--NPPPNPEGTRQARR-N------RRRRWRERQRQIHSISERILSTYLGRSAE 68 (115) T ss_dssp ------CHHHHHHHHHHHHHH--HS--SCCCCCCCCTTTHH-H------HHHHHHHHHHHHHHHHHHHHHTTTC---- T ss_pred CCCCCCHHHHHHHHHHHHHHH--CC--CCCCCCCCCCHHHH-H------HHHHHHHHHHHHHHHHHHHHHCCCCCCCC T ss_conf 876454899999999999874--38--98989987241114-1------46689999999999999984325899898 No 67 >3b40_A PVDM, probable dipeptidase; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.00A {Pseudomonas aeruginosa} Probab=30.83 E-value=20 Score=13.82 Aligned_cols=25 Identities=20% Similarity=0.133 Sum_probs=17.6 Q ss_pred CCCCCCCCCCCCCHHHHHHCCCCCC Q ss_conf 1354421000100036652022111 Q gi|255764472|r 263 LRYTTSHPRDMSDCLIKAHGDLDVL 287 (469) Q Consensus 263 iR~~s~~P~~~~~~li~~~~~~~~i 287 (469) .|-..-+|..++|+.|.++++.+-+ T Consensus 237 ~ral~~h~RNl~De~lraia~~GGv 261 (417) T 3b40_A 237 PRALVDIKRNLSDHEMQLIKDSGGV 261 (417) T ss_dssp BTTTSCCTTSBCHHHHHHHHHTTCE T ss_pred CCCCCCCCCCCCHHHHHHHHHCCCE T ss_conf 3345898889999999999972988 No 68 >1f07_A Coenzyme F420-dependent N5,N10- methylenetetrahydromethanopterin reductase; (beta, alpha)8 barrel, TIM barrel; HET: MPO; 2.00A {Methanothermobacterthermautotrophicus} SCOP: c.1.16.3 Probab=29.98 E-value=21 Score=13.72 Aligned_cols=53 Identities=15% Similarity=0.350 Sum_probs=27.4 Q ss_pred CCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHH Q ss_conf 457899873033344114678999874013443200000135220124789886332210 Q gi|255764472|r 298 GSDRILKSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMDLVDKI 357 (469) Q Consensus 298 gs~~vLk~M~R~~~~e~~~~~i~~~r~~~p~~~i~tdiIvGfPgETeedf~~Tl~~i~~~ 357 (469) .++.++....=-.|++++.+.+..+++. |+ +.||.++|.- .|.+++++++.++ T Consensus 265 ~~~~~~~~~~lvGtpe~v~e~l~~~~~~--Gv---d~~i~~~~~~--~d~~~~l~l~~ev 317 (321) T 1f07_A 265 VDDALMEAFSVVGTPDEFIPKIEALGEM--GV---TQYVAGSPIG--PDKEKSIKLLGEV 317 (321) T ss_dssp CCHHHHHHHCEEECHHHHHHHHHHHHHT--TC---CEEEEEEEEC--SSHHHHHHHHHHH T ss_pred CCHHHHCCEEEEECHHHHHHHHHHHHHC--CC---CEEEEECCCC--CCHHHHHHHHHHH T ss_conf 9998872807993899999999999955--99---8799968889--8999999999998 No 69 >1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 Probab=29.90 E-value=21 Score=13.71 Aligned_cols=11 Identities=9% Similarity=0.253 Sum_probs=7.1 Q ss_pred CEEEEECCCCC Q ss_conf 18999647301 Q gi|255764472|r 101 LLVVVAGCVAQ 111 (469) Q Consensus 101 ~~IvVtGC~aq 111 (469) -.|+++|+-+. T Consensus 95 Plivitg~~~~ 105 (552) T 1ovm_A 95 PVLHIVGAPGT 105 (552) T ss_dssp CEEEEEEECCH T ss_pred CEEEEECCCCH T ss_conf 77999685876 No 70 >1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3 Probab=29.69 E-value=21 Score=13.69 Aligned_cols=38 Identities=13% Similarity=0.321 Sum_probs=28.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHH Q ss_conf 99999999999998767664218981899964730108788987 Q gi|255764472|r 76 AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILR 119 (469) Q Consensus 76 ae~k~~~~i~~~~~~~~~~~k~~p~~~IvVtGC~aq~~~e~l~~ 119 (469) .+++..+.|.++.+ +-+|.+..|+++|.+..-++++.. T Consensus 80 g~~kL~~ai~~~~~------~~~P~~I~V~~tC~~~iIGdDi~~ 117 (458) T 1mio_B 80 GGSNIKTAVKNIFS------LYNPDIIAVHTTCLSETLGDDLPT 117 (458) T ss_dssp SHHHHHHHHHHHHH------HTCCSEEEEEECHHHHHHTCCHHH T ss_pred CHHHHHHHHHHHHH------HCCCCEEEEECCCHHHHHCCCHHH T ss_conf 58999999999998------529989999777649883688999 No 71 >3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A* Probab=29.30 E-value=21 Score=13.64 Aligned_cols=43 Identities=19% Similarity=-0.011 Sum_probs=26.0 Q ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCCCHHHHHHHC Q ss_conf 058899988763101331058731454113411344431000216788620 Q gi|255764472|r 206 SLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSE 256 (469) Q Consensus 206 ~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y~g~~~~~~~~~l~~Ll~~l~~ 256 (469) +++.+++.++.+.+.|+..|.|- |+. |.- .+....+++..+.+ T Consensus 167 ~~~~~~~~~~~~~~~Gad~I~l~--DT~---G~~---~P~~v~~lv~~l~~ 209 (337) T 3ble_A 167 SPDYVKSLVEHLSKEHIERIFLP--DTL---GVL---SPEETFQGVDSLIQ 209 (337) T ss_dssp CHHHHHHHHHHHHTSCCSEEEEE--CTT---CCC---CHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHCCCCCCC--CCC---CCC---CHHHHHHHHHHHHH T ss_conf 78999889999987511352036--511---347---86899999999998 No 72 >3fhk_A UPF0403 protein YPHP; disulfide isomerase, thioredoxin superfamily, CXC motif, structural genomics, surface entropy reduction, Ser, PSI-2; 2.30A {Bacillus subtilis} Probab=29.20 E-value=21 Score=13.63 Aligned_cols=21 Identities=14% Similarity=0.422 Sum_probs=15.9 Q ss_pred HHHHHHHHHHCCCEECCCCCC Q ss_conf 999999999879868776010 Q gi|255764472|r 41 SLRMEDMFFSQGYERVNSMDD 61 (469) Q Consensus 41 se~i~~~L~~~G~~~~~~~~~ 61 (469) -.-|+..|...||+...++++ T Consensus 16 V~pMr~ELt~~Gf~eL~t~e~ 36 (147) T 3fhk_A 16 VVPMRRELTGAGFEELTTAEE 36 (147) T ss_dssp HHHHHHHHHTTTCEECCSHHH T ss_pred HHHHHHHHHHHCHHHHCCHHH T ss_conf 999999999829374199999 No 73 >1w1z_A Delta-aminolevulinic acid dehydratase; synthase, tetrapyrrole biosynthesis, ALAD, porphyrin biosynthesis, heme biosynthesis, lyase; 2.6A {Prosthecochloris vibrioformis} SCOP: c.1.10.3 PDB: 2c1h_A* Probab=28.52 E-value=18 Score=14.22 Aligned_cols=34 Identities=29% Similarity=0.435 Sum_probs=18.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEC Q ss_conf 01221376410058899988763101331058731 Q gi|255764472|r 195 VPYTRGIEISRSLSQVVDEARKLIDNGVCEITLLG 229 (469) Q Consensus 195 ip~~RG~~rSr~~~~Iv~ei~~l~~~G~kEi~L~g 229 (469) ||..-|-+| .+++.++++++.+++.|++-|.|-| T Consensus 52 I~SMPGi~R-~SiD~L~~~ie~~~~lGI~av~LFp 85 (328) T 1w1z_A 52 VSSMPGSFR-FTIDRAVEECKELYDLGIQGIDLFG 85 (328) T ss_dssp ETTEEEEEE-EEHHHHHHHHHHHHHHTCCEEEEEE T ss_pred CCCCCCCEE-ECHHHHHHHHHHHHHCCCCEEEEEE T ss_conf 689998346-6799999999999986998899972 No 74 >3if8_A Hzwilch, protein zwilch homolog; incomplete beta-barrel, alternative splicing, cell cycle, CE division, kinetochore, mitosis, polymorphism; 2.55A {Homo sapiens} Probab=28.51 E-value=22 Score=13.55 Aligned_cols=71 Identities=18% Similarity=0.186 Sum_probs=44.9 Q ss_pred CEEEEEECCCHHHH-HHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEC-CCCCCHHHHHHHHHHHHHHHHHHHCCCHHE Q ss_conf 01332111457899-8730333441146789998740134432000001-352201247898863322101110020000 Q gi|255764472|r 290 YLHLPVQSGSDRIL-KSMNRRHTAYEYRQIIDRIRSVRPDIAISSDFIV-GFPGETDDDFRATMDLVDKIGYAQAFSFKY 367 (469) Q Consensus 290 ~lhlpiQSgs~~vL-k~M~R~~~~e~~~~~i~~~r~~~p~~~i~tdiIv-GfPgETeedf~~Tl~~i~~~~~~~~~vf~y 367 (469) -+||-++||++|-. -.|.|.- +..+-+.+-+|. ..+. -+|.|++..++.+-+|++++ .++.-|.- T Consensus 253 tLNIkvesGdpRs~l~~LyREL--kfLlvLaeGLrT---------gvtEWpep~E~kSAvelvqe~L~dL--nKlDg~~~ 319 (339) T 3if8_A 253 TLNIKVESGEPRGPLNHLYREL--KFLLVLADGLRT---------GVTEWLEPLEAKSAVELVQEFLNDL--NKLDGFGD 319 (339) T ss_dssp EEEEC-----------CCCHHH--HHHHHHHHHHHH---------SCCCCCCCSCSSCHHHHHHHHHHHH--HCC----- T ss_pred EEEEEECCCCCCCHHHHHHHHH--HHHHHHHHHHHC---------CCEECCCCCCHHHHHHHHHHHHHHH--HCCCCCCC T ss_conf 6886534898530268999999--999999977630---------8775788532166899999999986--52045574 Q ss_pred EECCCH Q ss_conf 111201 Q gi|255764472|r 368 SPRLGT 373 (469) Q Consensus 368 S~r~gT 373 (469) |-...| T Consensus 320 ss~K~t 325 (339) T 3if8_A 320 STKKDT 325 (339) T ss_dssp ------ T ss_pred CCCCCC T ss_conf 335631 No 75 >1l6n_A GAG polyprotein; matrix, capsid, maturation, viral protein; NMR {Human immunodeficiency virus 1} SCOP: a.61.1.1 a.73.1.1 Probab=28.42 E-value=6.7 Score=17.39 Aligned_cols=10 Identities=40% Similarity=0.361 Sum_probs=7.6 Q ss_pred ECCCHHHHHH Q ss_conf 1145789987 Q gi|255764472|r 296 QSGSDRILKS 305 (469) Q Consensus 296 QSgs~~vLk~ 305 (469) |+-|+|.|.. T Consensus 145 q~lSPRTLnA 154 (289) T 1l6n_A 145 QAISPRTLNA 154 (289) T ss_dssp CCCCHHHHHH T ss_pred CCCCCCCHHH T ss_conf 8899730999 No 76 >2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A* Probab=28.40 E-value=22 Score=13.53 Aligned_cols=35 Identities=14% Similarity=0.253 Sum_probs=26.4 Q ss_pred CCEEEEEE---------ECCCCCCHHHHHHHHHHHHHCCCEECC Q ss_conf 76079999---------579856887899999999987986877 Q gi|255764472|r 23 VPQRFFVK---------SYGCQMNVYDSLRMEDMFFSQGYERVN 57 (469) Q Consensus 23 ~~kkv~i~---------TlGC~~N~~Dse~i~~~L~~~G~~~~~ 57 (469) +|||+.|. +.|..+...+--.+...|.+.|+...+ T Consensus 2 ~p~~I~I~D~TLRDG~Q~~~~~~s~~~k~~i~~~L~~~Gi~~IE 45 (298) T 2cw6_A 2 LPKRVKIVEVGPRDGLQNEKNIVSTPVKIKLIDMLSEAGLSVIE 45 (298) T ss_dssp CCSBCEEEECTTTHHHHTCSSCCCHHHHHHHHHHHHHTTCSEEC T ss_pred CCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEE T ss_conf 99826999799861254999998999999999999983979999 No 77 >1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A Probab=28.06 E-value=22 Score=13.49 Aligned_cols=49 Identities=16% Similarity=0.294 Sum_probs=36.3 Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCC----CEEEECCCCCCHHHHHHHHHHHHHHH Q ss_conf 333441146789998740134432----00000135220124789886332210 Q gi|255764472|r 308 RRHTAYEYRQIIDRIRSVRPDIAI----SSDFIVGFPGETDDDFRATMDLVDKI 357 (469) Q Consensus 308 R~~~~e~~~~~i~~~r~~~p~~~i----~tdiIvGfPgETeedf~~Tl~~i~~~ 357 (469) |+.+.+|..++++.++..- +..+ +-.++..-|+|-..|+...+++++.. T Consensus 127 r~iS~~Di~~Ai~~L~~L~-g~~v~~i~gk~~V~Svp~els~D~~~vL~~a~~~ 179 (233) T 1u5t_A 127 LNVGLDDLEKSIDMLKSLE-CFEIFQIRGKKFLRSVPNELTSDQTKILEICSIL 179 (233) T ss_dssp TTCCHHHHHHHHHHHTTTC-CCCEEEETTEEEECCSSSCCCTTHHHHHHTTTTT T ss_pred CCCCHHHHHHHHHHHHCCC-CCEEEEECCEEEEEECCHHHHHHHHHHHHHHHHC T ss_conf 6999999999999975066-9769998998999927767756899999999866 No 78 >2xdq_A Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus} Probab=27.70 E-value=22 Score=13.45 Aligned_cols=39 Identities=10% Similarity=0.151 Sum_probs=26.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHH Q ss_conf 999999999999987676642189818999647301087889874 Q gi|255764472|r 76 AAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILRR 120 (469) Q Consensus 76 ae~k~~~~i~~~~~~~~~~~k~~p~~~IvVtGC~aq~~~e~l~~~ 120 (469) +.+|..+.|.++. .+.+|.+..|++.|.++.-++++... T Consensus 81 ~~e~L~~~I~ei~------~~~~P~~I~V~sTC~seiIGdDl~~v 119 (460) T 2xdq_A 81 DYEELKRLCLEIK------RDRNPSVIVWIGTCTTEIIKMDLEGL 119 (460) T ss_dssp HHHHHHHHHHHHH------HHHCCSEEEEEECHHHHHTTCCHHHH T ss_pred HHHHHHHHHHHHH------HCCCCCEEEEECCCCHHHHCCCHHHH T ss_conf 5999999999998------60599889997676088757769999 No 79 >1d5r_A Phosphoinositide phosphotase PTEN; C2 domain, phosphotidylinositol, hydrolase; HET: TLA; 2.10A {Homo sapiens} SCOP: b.7.1.1 c.45.1.1 Probab=27.12 E-value=19 Score=14.00 Aligned_cols=21 Identities=0% Similarity=0.161 Sum_probs=10.6 Q ss_pred HHHHHHHHHHHHHCCCCEEEE Q ss_conf 588999887631013310587 Q gi|255764472|r 207 LSQVVDEARKLIDNGVCEITL 227 (469) Q Consensus 207 ~~~Iv~ei~~l~~~G~kEi~L 227 (469) +-++++.+......+-+.+++ T Consensus 95 l~~~~~~i~~~l~~~~~nvv~ 115 (324) T 1d5r_A 95 IKPFCEDLDQWLSEDDNHVAA 115 (324) T ss_dssp HHHHHHHHHHHHTTTSCSEEE T ss_pred HHHHHHHHHHHHHCCCCCEEE T ss_conf 999999999999549994899 No 80 >1v93_A 5,10-methylenetetrahydrofolate reductase; flavoprotein, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: FAD; 1.90A {Thermus thermophilus HB8} SCOP: c.1.23.1 Probab=26.97 E-value=23 Score=13.36 Aligned_cols=24 Identities=21% Similarity=0.392 Sum_probs=11.9 Q ss_pred HHHHHHHHHHHHHHCCCCEEEEEC Q ss_conf 058899988763101331058731 Q gi|255764472|r 206 SLSQVVDEARKLIDNGVCEITLLG 229 (469) Q Consensus 206 ~~~~Iv~ei~~l~~~G~kEi~L~g 229 (469) ....+-+.+..+.+.|+++|..++ T Consensus 84 n~~~l~~~l~~~~~~GI~niLal~ 107 (296) T 1v93_A 84 SRKEVAEVLHRFVESGVENLLALR 107 (296) T ss_dssp CHHHHHHHHHHHHHTTCCEEEECC T ss_pred CHHHHHHHHHHHHHCCCCEEEEEC T ss_conf 788899999999981988676614 No 81 >1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; 2.71A {Bacillus subtilis subsp} Probab=26.61 E-value=23 Score=13.31 Aligned_cols=35 Identities=11% Similarity=0.204 Sum_probs=27.5 Q ss_pred CCEEEEEE---------ECCCCCCHHHHHHHHHHHHHCCCEECC Q ss_conf 76079999---------579856887899999999987986877 Q gi|255764472|r 23 VPQRFFVK---------SYGCQMNVYDSLRMEDMFFSQGYERVN 57 (469) Q Consensus 23 ~~kkv~i~---------TlGC~~N~~Dse~i~~~L~~~G~~~~~ 57 (469) +||||.|. +.|..++.-|--.+...|.+.|+...+ T Consensus 3 ~p~~I~I~D~TLRDG~Qs~~~~~s~~~k~~i~~~L~~~Gv~~IE 46 (307) T 1ydo_A 3 YPKKVTIKEVGPRDGLQNEPVWIATEDKITWINQLSRTGLSYIE 46 (307) T ss_dssp CCSBCEEEECHHHHTGGGSSSCCCHHHHHHHHHHHHTTTCSEEE T ss_pred CCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEE T ss_conf 98834898799885365989988999999999999981999899 No 82 >1luc_A Bacterial luciferase; monooxygenase, flavoprotein; 1.50A {Vibrio harveyi} SCOP: c.1.16.1 PDB: 1brl_A 3fgc_A* Probab=26.50 E-value=24 Score=13.30 Aligned_cols=44 Identities=23% Similarity=0.381 Sum_probs=19.9 Q ss_pred CCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCC-HHHHHHHHHHHH-HHH Q ss_conf 344114678999874013443200000135220-124789886332-210 Q gi|255764472|r 310 HTAYEYRQIIDRIRSVRPDIAISSDFIVGFPGE-TDDDFRATMDLV-DKI 357 (469) Q Consensus 310 ~~~e~~~~~i~~~r~~~p~~~i~tdiIvGfPgE-Teedf~~Tl~~i-~~~ 357 (469) .|++++.+.++.+.+.. |+ ..|++.+|.- +.++..++++++ +++ T Consensus 302 Gtpe~v~~~l~~~~e~~-G~---d~~~l~~~~~~~~e~~~~sl~lfa~~V 347 (355) T 1luc_A 302 GTPEECIAIIQQDIDAT-GI---DNICCGFEANGSEEEIIASMKLFQSDV 347 (355) T ss_dssp ESHHHHHHHHHHHHHHH-CC---CEEEEECGGGCSHHHHHHHHHHHHHHT T ss_pred ECHHHHHHHHHHHHHHH-CC---CEEEEECCCCCCHHHHHHHHHHHHHHC T ss_conf 58999999999999986-99---979997789999999999999999825 No 83 >1vi7_A Hypothetical protein YIGZ; structural genomics, unknown function; 2.80A {Escherichia coli} SCOP: d.14.1.11 d.58.11.2 Probab=26.24 E-value=24 Score=13.26 Aligned_cols=14 Identities=29% Similarity=0.487 Sum_probs=5.7 Q ss_pred ECCCCCCHHHHHHH Q ss_conf 01352201247898 Q gi|255764472|r 336 IVGFPGETDDDFRA 349 (469) Q Consensus 336 IvGfPgETeedf~~ 349 (469) .+-.|-+..+.|++ T Consensus 177 ~~~v~~~~~~~~~~ 190 (217) T 1vi7_A 177 RVALPAAKVAEFSA 190 (217) T ss_dssp EEEECSSTHHHHHH T ss_pred EEEECHHHHHHHHH T ss_conf 99997999999999 No 84 >3gwq_A D-serine deaminase; YP_556991.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 2.00A {Burkholderia xenovorans LB400} Probab=26.21 E-value=24 Score=13.26 Aligned_cols=18 Identities=17% Similarity=0.361 Sum_probs=11.0 Q ss_pred HHHHHHHHHCCCCEEEEE Q ss_conf 998876310133105873 Q gi|255764472|r 211 VDEARKLIDNGVCEITLL 228 (469) Q Consensus 211 v~ei~~l~~~G~kEi~L~ 228 (469) +.|++.+.+.|++.+.|. T Consensus 103 l~Ea~~l~~~Gi~~illa 120 (426) T 3gwq_A 103 AHQVRAAYHGGVSRVLMA 120 (426) T ss_dssp HHHHHHHHHTTCCEEEEC T ss_pred HHHHHHHHHCCCCCEEEE T ss_conf 999999997699987994 No 85 >3bij_A Uncharacterized protein GSU0716; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.50A {Geobacter sulfurreducens pca} Probab=26.05 E-value=24 Score=13.24 Aligned_cols=72 Identities=17% Similarity=0.349 Sum_probs=40.8 Q ss_pred CCEEEEEEECCCC-------------CC--HHHHHHHHHHHHHCCCEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHHH Q ss_conf 7607999957985-------------68--87899999999987986877601088999927832507999999999999 Q gi|255764472|r 23 VPQRFFVKSYGCQ-------------MN--VYDSLRMEDMFFSQGYERVNSMDDADLIVLNTCHIREKAAEKVYSFLGRI 87 (469) Q Consensus 23 ~~kkv~i~TlGC~-------------~N--~~Dse~i~~~L~~~G~~~~~~~~~ADviiINTCsV~~~ae~k~~~~i~~~ 87 (469) |||++++ --|+. +. ..|.+.|...|...||.+.. ++| .+++.+.+...|.++ T Consensus 1 ~p~~~Al-lIGin~~~~~~Y~~~~~~L~g~vnDa~~~~~~L~~~gf~v~~--------l~~----~~aTr~~i~~al~~l 67 (285) T 3bij_A 1 MPKGIAL-ALGLNAVDPKHYGGWAGKLNACEADAEDMAAIAAERGFAVTT--------LMT----KAATRAKVIDAIGKA 67 (285) T ss_dssp -CCEEEE-EEECSCCCTTTTTTCCCCCSSHHHHHHHHHHHHHHTTCEEEE--------EEG----GGCCHHHHHHHHHHH T ss_pred CCCCEEE-EEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEE--------EEC----CCCCHHHHHHHHHHH T ss_conf 9876799-995068874347997412688289999999999986997599--------626----766799999999999 Q ss_pred HHHHHHHHHCCCCCEEEEECCCCC Q ss_conf 987676642189818999647301 Q gi|255764472|r 88 RNLKNSRIKEGGDLLVVVAGCVAQ 111 (469) Q Consensus 88 ~~~~~~~~k~~p~~~IvVtGC~aq 111 (469) .+ ..+.+-.+.+.-+|=-.+ T Consensus 68 ~~----~~~~~D~v~~yfSGHG~~ 87 (285) T 3bij_A 68 AK----ALGKGDIFMLSYSGHGGQ 87 (285) T ss_dssp HH----HCCTTCEEEEEEESCEEE T ss_pred HH----HCCCCCEEEEEECCCCCE T ss_conf 98----588998899998475315 No 86 >1ujp_A Tryptophan synthase alpha chain; riken structural genomics/proteomics initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus HB8} SCOP: c.1.2.4 PDB: 1wxj_A* Probab=25.92 E-value=24 Score=13.22 Aligned_cols=32 Identities=19% Similarity=0.264 Sum_probs=19.5 Q ss_pred CHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHH Q ss_conf 1146789998740134432000001352201247898 Q gi|255764472|r 313 YEYRQIIDRIRSVRPDIAISSDFIVGFPGETDDDFRA 349 (469) Q Consensus 313 e~~~~~i~~~r~~~p~~~i~tdiIvGfPgETeedf~~ 349 (469) .+..+.++++|+.. ..-+.|||==-|.++.+. T Consensus 188 ~~~~~~i~~ik~~t-----~~Pv~vGFGI~t~e~~~~ 219 (271) T 1ujp_A 188 EEVKDLVRRIKART-----ALPVAVGFGVSGKATAAQ 219 (271) T ss_dssp -CCHHHHHHHHTTC-----CSCEEEESCCCSHHHHHH T ss_pred HHHHHHHHHHHCCC-----CCCEEEECCCCCHHHHHH T ss_conf 35899998751056-----897599807798899987 No 87 >3ktc_A Xylose isomerase; putative sugar isomerase, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.54A {Pectobacterium atrosepticum SCRI1043} Probab=25.64 E-value=24 Score=13.19 Aligned_cols=27 Identities=4% Similarity=0.139 Sum_probs=14.3 Q ss_pred CCCHH-HHHHHHHHHHHHHHHHHCCCHH Q ss_conf 22012-4789886332210111002000 Q gi|255764472|r 340 PGETD-DDFRATMDLVDKIGYAQAFSFK 366 (469) Q Consensus 340 PgETe-edf~~Tl~~i~~~~~~~~~vf~ 366 (469) ||+.. .++.+.+..+++..++-.-.|- T Consensus 244 ~G~~~~~~~~~i~~~L~~~gY~G~i~~d 271 (333) T 3ktc_A 244 VGTVHMTEIFEFFYVLKINNWQGVWQLD 271 (333) T ss_dssp TTSSCHHHHHHHHHHHHHTTCCCCEEEC T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCEEEE T ss_conf 8885789999999999974998538998 No 88 >2p2v_A Alpha-2,3-sialyltransferase; mixed alpha-beta; HET: CSF; 1.85A {Campylobacter jejuni} PDB: 2p56_A Probab=25.42 E-value=25 Score=13.16 Aligned_cols=24 Identities=25% Similarity=0.123 Sum_probs=17.3 Q ss_pred HHHHHHHHHCCCCEEEEECCCCCE Q ss_conf 998876310133105873145411 Q gi|255764472|r 211 VDEARKLIDNGVCEITLLGQNVNA 234 (469) Q Consensus 211 v~ei~~l~~~G~kEi~L~g~d~~~ 234 (469) ..-+..++..|++||.|.|.|... T Consensus 152 ~~ai~lA~~mGfkeIyL~G~D~~~ 175 (288) T 2p2v_A 152 VYMCAIAIALGYKTIYLCGIDFYE 175 (288) T ss_dssp HHHHHHHHHHTCCEEEEESCCTTC T ss_pred HHHHHHHHHCCCCEEEEEEECCCC T ss_conf 999999998599889999661687 No 89 >1ed1_A GAG polyprotein, SIV MA; trimeric association, viral protein; 2.10A {Simian immunodeficiency virus - mac} SCOP: a.61.1.1 PDB: 1ecw_A 2k4e_A 2k4h_A* 2k4i_A* Probab=25.18 E-value=12 Score=15.48 Aligned_cols=69 Identities=10% Similarity=0.253 Sum_probs=42.0 Q ss_pred CCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCHHHH---------HHHCCCCCCCHH Q ss_conf 00021678862044430013544210001000366520221112201332111457899---------873033344114 Q gi|255764472|r 245 CTFSDLLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLDVLMPYLHLPVQSGSDRIL---------KSMNRRHTAYEY 315 (469) Q Consensus 245 ~~l~~Ll~~l~~i~~~~riR~~s~~P~~~~~~li~~~~~~~~i~~~lhlpiQSgs~~vL---------k~M~R~~~~e~~ 315 (469) ..+..|+.+-.++ .|+ .+++.|++.-..+.++...++-.+|.||...- --.+.+..+.|. T Consensus 29 Y~lKHlvWasrEL---eRf--------alnp~LLet~eGC~qil~ql~p~l~tGSe~LkSL~ntvavLyCvH~~i~VkDT 97 (135) T 1ed1_A 29 YMLKHVVWAANEL---DRF--------GLAESLLENKEGCQKILSVLAPLVPTGSENLKSLYNTVCVIWCIHAEEKVKHT 97 (135) T ss_dssp CCHHHHHHHHHHH---HHT--------TCCGGGGGSHHHHHHHHHHHGGGGGGCCHHHHHHHHHHHHHHHHHTTCCCSBH T ss_pred HHHHHHHHHHHHH---HHH--------CCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCEEEEEEEECCCCCCCH T ss_conf 2124454446677---776--------06811344188999999983612222638888665140036766347404757 Q ss_pred HHHHHHHHH Q ss_conf 678999874 Q gi|255764472|r 316 RQIIDRIRS 324 (469) Q Consensus 316 ~~~i~~~r~ 324 (469) .++++++.+ T Consensus 98 kEAl~kve~ 106 (135) T 1ed1_A 98 EEAKQIVQR 106 (135) T ss_dssp HHHHHHHHH T ss_pred HHHHHHHHH T ss_conf 999999999 No 90 >2yys_A Proline iminopeptidase-related protein; TTHA1809, structural genomics, unknown function; 2.20A {Thermus thermophilus HB8} Probab=25.16 E-value=23 Score=13.41 Aligned_cols=32 Identities=22% Similarity=0.298 Sum_probs=21.8 Q ss_pred HHHHHHHHHHHHHHHHC-CCCEEEEECCCCCEE Q ss_conf 10058899988763101-331058731454113 Q gi|255764472|r 204 SRSLSQVVDEARKLIDN-GVCEITLLGQNVNAW 235 (469) Q Consensus 204 Sr~~~~Iv~ei~~l~~~-G~kEi~L~g~d~~~Y 235 (469) .+++++.++.+..+.+. |.+.+.|.|...|.+ T Consensus 75 ~~~~~~~~~di~~~~~~l~~~~~~lvGhS~Gg~ 107 (286) T 2yys_A 75 LFTVDALVEDTLLLAEALGVERFGLLAHGFGAV 107 (286) T ss_dssp GCCHHHHHHHHHHHHHHTTCCSEEEEEETTHHH T ss_pred CCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCC T ss_conf 678999999999999973999689997137865 No 91 >1q7z_A 5-methyltetrahydrofolate S-homocysteine methyltransferase; methionine, cobalamin, vitamin B12; 1.70A {Thermotoga maritima} SCOP: c.1.21.2 c.1.26.1 PDB: 1q7q_A 1q7m_A 1q85_A 1q8a_A 1q8j_A* 3bof_A 3bol_A Probab=25.05 E-value=25 Score=13.11 Aligned_cols=22 Identities=18% Similarity=0.247 Sum_probs=9.3 Q ss_pred HHHHHHHHHHHHHHHHHCCCCE Q ss_conf 4100588999887631013310 Q gi|255764472|r 203 ISRSLSQVVDEARKLIDNGVCE 224 (469) Q Consensus 203 rSr~~~~Iv~ei~~l~~~G~kE 224 (469) ..+..+.|+++++..++.|..- T Consensus 335 ~~~d~~~~~~~a~~Q~~~GA~~ 356 (566) T 1q7z_A 335 QKGNEEIVIKEAKTQVEKGAEV 356 (566) T ss_dssp HTTCCHHHHHHHHHHHHTTCSE T ss_pred HCCCHHHHHHHHHHHHHCCCCE T ss_conf 7133167999999999869987 No 92 >2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92, PSI-2; 2.10A {Neptuniibacter caesariensis} Probab=24.82 E-value=25 Score=13.08 Aligned_cols=14 Identities=21% Similarity=0.548 Sum_probs=6.8 Q ss_pred HHHHHHHHHHCCCC Q ss_conf 67899987401344 Q gi|255764472|r 316 RQIIDRIRSVRPDI 329 (469) Q Consensus 316 ~~~i~~~r~~~p~~ 329 (469) .+++..+|+..|++ T Consensus 67 ~~~l~~ir~~~~~~ 80 (154) T 2rjn_A 67 EVFLEQVAKSYPDI 80 (154) T ss_dssp HHHHHHHHHHCTTS T ss_pred HHHHHHHHHHCCCC T ss_conf 89999999858899 No 93 >3kws_A Putative sugar isomerase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503} Probab=24.81 E-value=25 Score=13.08 Aligned_cols=24 Identities=29% Similarity=0.632 Sum_probs=14.9 Q ss_pred CCCCCHHH--HHHHHHHHHHHHHHHH Q ss_conf 35220124--7898863322101110 Q gi|255764472|r 338 GFPGETDD--DFRATMDLVDKIGYAQ 361 (469) Q Consensus 338 GfPgETee--df~~Tl~~i~~~~~~~ 361 (469) +.||+..+ +|...++.+++..|+- T Consensus 232 ~~p~~~g~~~~~~~i~~~L~~~Gy~G 257 (287) T 3kws_A 232 SMPGEDGDADNYINGFKGLKMIGYNN 257 (287) T ss_dssp CSTTTTGGGCCCHHHHHHHHHTTCCS T ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCC T ss_conf 88999987420999999999839982 No 94 >1xim_A D-xylose isomerase; isomerase(intramolecular oxidoreductse); HET: XYL; 2.20A {Actinoplanes missouriensis} SCOP: c.1.15.3 PDB: 4xim_A 5xim_A* 6xim_A* 7xim_A 8xim_A* 9xim_A* 3xin_A 2xim_A* 5xin_A* 1xin_A* 1bhw_A* 2xin_A* 3xim_A* Probab=24.64 E-value=25 Score=13.06 Aligned_cols=25 Identities=12% Similarity=0.127 Sum_probs=10.9 Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEEE Q ss_conf 4100588999887631013310587 Q gi|255764472|r 203 ISRSLSQVVDEARKLIDNGVCEITL 227 (469) Q Consensus 203 rSr~~~~Iv~ei~~l~~~G~kEi~L 227 (469) |.+-++.+.+-++...+-|.+-+++ T Consensus 111 R~~Ai~~~k~aIDiaa~LGa~~~v~ 135 (393) T 1xim_A 111 RRYAIRKVLRQMDLGAELGAKTLVL 135 (393) T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEE T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEE T ss_conf 9999999999999999968996998 No 95 >3gve_A YFKN protein; alpha-beta-BETA-alpha sandwich, structural genomics, PSI-2, protein structure initiative; HET: CIT; 1.25A {Bacillus subtilis subsp} Probab=24.35 E-value=26 Score=13.02 Aligned_cols=53 Identities=15% Similarity=0.122 Sum_probs=25.9 Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCCCHHHHHHHCCC Q ss_conf 005889998876310133105873145411341134443100021678862044 Q gi|255764472|r 205 RSLSQVVDEARKLIDNGVCEITLLGQNVNAWRGKGLDGEKCTFSDLLYSLSEIK 258 (469) Q Consensus 205 r~~~~Iv~ei~~l~~~G~kEi~L~g~d~~~Y~g~~~~~~~~~l~~Ll~~l~~i~ 258 (469) -+.+.+-+.++.+.++|+.=|++++ +.+.+.+...........+|.+.+..++ T Consensus 191 d~~~~~~~~v~~l~~~g~DiiV~ls-H~G~~~d~~~~~~~~~~~~la~~~~gvD 243 (341) T 3gve_A 191 DIVESANETIPKMKAEGADVIIALA-HTGIEKQAQSSGAENAVFDLATKTKGID 243 (341) T ss_dssp CHHHHHHHHHHHHHHTTCSEEEEEE-CCCCCSSCCCTTCSSCHHHHHHHCSCCC T ss_pred CHHHHHHHHHHHHHHCCCCEEEEEE-CCCCCCCCCCCCCCHHHHHHHHCCCCCC T ss_conf 5999999999766644998899985-1684444334554417889985599964 No 96 >2pby_A Glutaminase; secsg, riken, structural genomics, PSI, protein structure initiative; 2.07A {Geobacillus kaustophilus HTA426} Probab=24.27 E-value=23 Score=13.31 Aligned_cols=12 Identities=8% Similarity=-0.053 Sum_probs=5.6 Q ss_pred HHHCCCHHEEEC Q ss_conf 110020000111 Q gi|255764472|r 359 YAQAFSFKYSPR 370 (469) Q Consensus 359 ~~~~~vf~yS~r 370 (469) |.+..+--|||+ T Consensus 271 Pg~~gIav~SP~ 282 (308) T 2pby_A 271 PGRCGIGVFGPA 282 (308) T ss_dssp TTTEEEEEECCC T ss_pred CCCEEEEEECCC T ss_conf 796089998988 No 97 >3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} PDB: 3hf3_A* Probab=22.32 E-value=28 Score=12.75 Aligned_cols=115 Identities=14% Similarity=0.117 Sum_probs=45.9 Q ss_pred HHHHHHH----HHHHHHCCCCEEEEECCC---------------CCEEEECCCCCCCCCCCHHHHHHHCCCC-C--CCCC Q ss_conf 5889998----876310133105873145---------------4113411344431000216788620444-3--0013 Q gi|255764472|r 207 LSQVVDE----ARKLIDNGVCEITLLGQN---------------VNAWRGKGLDGEKCTFSDLLYSLSEIKG-L--VRLR 264 (469) Q Consensus 207 ~~~Iv~e----i~~l~~~G~kEi~L~g~d---------------~~~Y~g~~~~~~~~~l~~Ll~~l~~i~~-~--~riR 264 (469) +++|+++ ++...+.|+.=|-|.+-| +-.|+| .+.+.-.-+.+.++.+.+.-| . ..+| T Consensus 147 I~~ii~~f~~AA~rA~~AGfDGVEiH~ahGyLl~qFlSp~~N~RtD~YGG-s~enR~Rf~~Eii~aIr~~vg~~~~i~~R 225 (349) T 3hgj_A 147 MERILQAFVEGARRALRAGFQVIELHMAHGYLLSSFLSPLSNQRTDAYGG-SLENRMRFPLQVAQAVREVVPRELPLFVR 225 (349) T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEEECTTSHHHHHHCTTTCCCCSTTSS-SHHHHHHHHHHHHHHHHHHSCTTSCEEEE T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCCCCCCCCCCC-CHHHHHHHHHHHHHHHHHHCCCCCEEEEE T ss_conf 99999999999999998098914605126799999058876898876787-87788899999999999970899728996 Q ss_pred CCCCC--CCCCC-CHHHHHHCCCC-CCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHC Q ss_conf 54421--00010-00366520221-11220133211145789987303334411467899987401 Q gi|255764472|r 265 YTTSH--PRDMS-DCLIKAHGDLD-VLMPYLHLPVQSGSDRILKSMNRRHTAYEYRQIIDRIRSVR 326 (469) Q Consensus 265 ~~s~~--P~~~~-~~li~~~~~~~-~i~~~lhlpiQSgs~~vLk~M~R~~~~e~~~~~i~~~r~~~ 326 (469) ++.-+ +..++ ++.+++.+... .-.-++|++.-..... ................+|+.. T Consensus 226 ~s~~d~~~~g~~~ee~~~~~~~l~~~g~d~~~~s~~~~~~~----~~~~~~~~~~~~~~~~ik~~~ 287 (349) T 3hgj_A 226 VSATDWGEGGWSLEDTLAFARRLKELGVDLLDCSSGGVVLR----VRIPLAPGFQVPFADAVRKRV 287 (349) T ss_dssp EESCCCSTTSCCHHHHHHHHHHHHHTTCCEEEEECCCSCSS----SCCCCCTTTTHHHHHHHHHHH T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCC----CCCCCCCCCCHHHHHHHHHHC T ss_conf 77021467998779999999999875975164125642124----345667643368999999875 No 98 >1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural genomics, joint center for structural genomics, JCSG; 2.18A {Thermotoga maritima MSB8} SCOP: c.1.5.1 Probab=22.23 E-value=28 Score=12.73 Aligned_cols=20 Identities=25% Similarity=0.493 Sum_probs=15.8 Q ss_pred HHHHHHHHHHHHCCCCEEEE Q ss_conf 88999887631013310587 Q gi|255764472|r 208 SQVVDEARKLIDNGVCEITL 227 (469) Q Consensus 208 ~~Iv~ei~~l~~~G~kEi~L 227 (469) ++-.+.++.|++.|+.=|++ T Consensus 236 ~~~~eRa~~Lv~aGvD~ivI 255 (494) T 1vrd_A 236 PETMERVEKLVKAGVDVIVI 255 (494) T ss_dssp TTHHHHHHHHHHTTCSEEEE T ss_pred CHHHHHHHHHHHCCCCEEEE T ss_conf 20289999999769989999 No 99 >2xed_A Putative maleate isomerase; nicotinic acid catabolism, cofactor-independent CIS-trans isomerase; 1.95A {Nocardia farcinica} PDB: 2xec_A Probab=21.71 E-value=29 Score=12.66 Aligned_cols=35 Identities=14% Similarity=0.155 Sum_probs=19.3 Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCC Q ss_conf 678862044430013544210001000366520221 Q gi|255764472|r 250 LLYSLSEIKGLVRLRYTTSHPRDMSDCLIKAHGDLD 285 (469) Q Consensus 250 Ll~~l~~i~~~~riR~~s~~P~~~~~~li~~~~~~~ 285 (469) +++.|..+ |..||-+.+.||..+++.+.+.+.+.+ T Consensus 137 i~~AL~~l-gakrIallTPY~~~v~~~~~~~~~~~G 171 (273) T 2xed_A 137 LVEGLRAL-DAQRVALVTPYMRPLAEKVVAYLEAEG 171 (273) T ss_dssp HHHHHHHT-TCCEEEEEECSCHHHHHHHHHHHHHTT T ss_pred HHHHHHHC-CCCCEEEECCCCHHHHHHHHHHHHHCC T ss_conf 99999964-998579974797899999999999678 No 100 >3aek_B Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_B* 3aer_B 3aes_B* 3aeu_B 3aet_B Probab=21.49 E-value=29 Score=12.63 Aligned_cols=41 Identities=12% Similarity=0.079 Sum_probs=29.5 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHH Q ss_conf 50799999999999998767664218981899964730108788987 Q gi|255764472|r 73 REKAAEKVYSFLGRIRNLKNSRIKEGGDLLVVVAGCVAQAEGEEILR 119 (469) Q Consensus 73 ~~~ae~k~~~~i~~~~~~~~~~~k~~p~~~IvVtGC~aq~~~e~l~~ 119 (469) ...++++..+.|.++.+ +-+|++.+|++.|.++.-++++.. T Consensus 66 v~Gg~~~L~~aI~~~~~------~~~P~~I~V~tTC~selIGDDi~~ 106 (525) T 3aek_B 66 GTDTAILLKDALAAAHA------RYKPQAMAVALTCTAELLQDDPNG 106 (525) T ss_dssp TTHHHHHHHHHHHHHHH------HHCCSEEEEEECTTGGGSCCCHHH T ss_pred ECCHHHHHHHHHHHHHH------HCCCCEEEEECCCHHHHHCCCHHH T ss_conf 55708999999999988------509989999777659886589999 No 101 >3gdm_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, K93R mutant, lyase, phosphoprotein; 1.60A {Saccharomyces cerevisiae} PDB: 3gdl_A* 3gdk_A* 3gdt_A* 3gdr_A* 1dqw_A 1dqx_A* Probab=21.09 E-value=29 Score=12.57 Aligned_cols=23 Identities=22% Similarity=0.130 Sum_probs=10.7 Q ss_pred EECCCCC-CHHHHHHHHHHHHHHH Q ss_conf 0013522-0124789886332210 Q gi|255764472|r 335 FIVGFPG-ETDDDFRATMDLVDKI 357 (469) Q Consensus 335 iIvGfPg-ETeedf~~Tl~~i~~~ 357 (469) +|||=|= +..++-.+..+..++. T Consensus 231 iVVGR~I~~~a~~p~~aa~~y~~~ 254 (267) T 3gdm_A 231 IIVGRGLFAKGRDAKVEGERYRKA 254 (267) T ss_dssp EEECGGGTSTTCCHHHHHHHHHHH T ss_pred EEECCCCCCCCCCHHHHHHHHHHH T ss_conf 998972357888999999999999 No 102 >3eww_A Ompdecase, orotidine-5'-phosphate decarboxylase; TIM barrel, unusual catalysis, alternative splicing, disease mutation, glycosyltransferase, lyase; HET: U1P; 1.10A {Homo sapiens} PDB: 2qcl_A* 2qcm_A* 3ewu_A* 2qcf_A* 3ex6_A* 3ex4_A* 2qcd_A* 2qcc_A 2qcg_A* 2qch_A* 2qcn_A* 2qce_A* 3ewz_A* 3ex1_A* 3ex2_A* 3ex3_A* 3ex0_A* 3ex5_A* 3l0k_A* 3l0n_A* ... Probab=20.57 E-value=30 Score=12.50 Aligned_cols=14 Identities=7% Similarity=0.143 Sum_probs=7.0 Q ss_pred CCCCCC-CCCHHHCC Q ss_conf 001100-11001113 Q gi|255764472|r 122 PIVNVV-VGPQTYYR 135 (469) Q Consensus 122 p~vd~v-ig~~~~~~ 135 (469) |.++.+ +|..-+.+ T Consensus 55 ~~v~~iKvG~~l~~~ 69 (260) T 3eww_A 55 PSICMLKTHVDILND 69 (260) T ss_dssp GGCSEEEECGGGCTT T ss_pred CCCEEEEECHHHHHC T ss_conf 866599989899716 No 103 >2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics, PSI, protein structure initiative; 1.83A {Streptococcus pneumoniae TIGR4} Probab=20.50 E-value=30 Score=12.49 Aligned_cols=30 Identities=27% Similarity=0.390 Sum_probs=16.9 Q ss_pred HHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHH Q ss_conf 89998740134432000001352201247898863 Q gi|255764472|r 318 IIDRIRSVRPDIAISSDFIVGFPGETDDDFRATMD 352 (469) Q Consensus 318 ~i~~~r~~~p~~~i~tdiIvGfPgETeedf~~Tl~ 352 (469) ++..+++..|+. ++|||--||+.+-++.++ T Consensus 144 iL~~i~~~~p~~-----~lVGFkaEt~~~~e~Li~ 173 (232) T 2gk4_A 144 IISLVKEWNPTI-----HLIGFKLLVDVTEDHLVD 173 (232) T ss_dssp CHHHHHHHCTTS-----EEEEEEEESSCCHHHHHH T ss_pred HHHHHHHHCCCC-----EEEEEEEECCCCHHHHHH T ss_conf 545434107884-----388777740752567999 No 104 >1ub0_A THID, phosphomethylpyrimidine kinase; thiamin biosynthesis, ribokinase family, phosphorylation, structural genomics; 2.05A {Thermus thermophilus} SCOP: c.72.1.2 Probab=20.20 E-value=31 Score=12.44 Aligned_cols=29 Identities=24% Similarity=0.418 Sum_probs=23.5 Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEECCCCC Q ss_conf 00588999887631013310587314541 Q gi|255764472|r 205 RSLSQVVDEARKLIDNGVCEITLLGQNVN 233 (469) Q Consensus 205 r~~~~Iv~ei~~l~~~G~kEi~L~g~d~~ 233 (469) .+.+++.+-++.+.+.|.+.++++|-+.. T Consensus 150 ~~~~~~~~aa~~l~~~g~~~Vlitg~~~~ 178 (258) T 1ub0_A 150 RTLKEAEEAAKALLALGPKAVLLKGGHLE 178 (258) T ss_dssp CSHHHHHHHHHHHHTTSCSCEEEEEEECC T ss_pred CCHHHHHHHHHHHHHHCCCEEEECCCCCC T ss_conf 99899999999999728965996266433 No 105 >1vkf_A Glycerol uptake operon antiterminator-related protein; TM1436, structural genomics, JCSG, PSI, protein structure initiative; HET: CIT; 1.65A {Thermotoga maritima MSB8} SCOP: c.1.29.1 Probab=20.18 E-value=31 Score=12.44 Aligned_cols=18 Identities=22% Similarity=0.237 Sum_probs=9.5 Q ss_pred EEECCCCCCHHHHHHHHH Q ss_conf 000135220124789886 Q gi|255764472|r 334 DFIVGFPGETDDDFRATM 351 (469) Q Consensus 334 diIvGfPgETeedf~~Tl 351 (469) .+|.|===+|+||..+-+ T Consensus 151 piIAGGLI~~~edV~~aL 168 (188) T 1vkf_A 151 TVIAAGLVETEEEAREIL 168 (188) T ss_dssp EEEEESCCCSHHHHHHHT T ss_pred EEEEECCCCCHHHHHHHH T ss_conf 099615728899999998 Done!